BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 044770
         (464 letters)

Database: nr 
           23,463,169 sequences; 8,064,228,071 total letters

Searching..................................................done



>gi|225434953|ref|XP_002281058.1| PREDICTED: pentatricopeptide repeat-containing protein At1g07590,
           mitochondrial [Vitis vinifera]
          Length = 550

 Score =  770 bits (1989), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 367/462 (79%), Positives = 412/462 (89%)

Query: 1   IERLPRGEPVGSAFQSWMREGFPVHRGEIFHSINRLRKLQLNKRALEVMEWVIRERPYRP 60
           IE+LPRGEPVG AFQSWM EG P+HRG IFH+INRLRKL+ NKRALEVMEWV+RERPYRP
Sbjct: 88  IEKLPRGEPVGLAFQSWMGEGCPIHRGHIFHAINRLRKLKFNKRALEVMEWVVRERPYRP 147

Query: 61  KELDYSYLLEFTIKNHGISQGEKLFCCIPKDYQNELLYNNLVIACLDKGVIKLSLEYMKK 120
           KELDYSYLLEFT K HGISQGEKLF  +P ++QNELLYNNLVIACLDKGVI+LSL YMKK
Sbjct: 148 KELDYSYLLEFTTKLHGISQGEKLFSHVPLEFQNELLYNNLVIACLDKGVIRLSLAYMKK 207

Query: 121 MRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHN 180
           MR LGH ISYLVFNRLIIL+SSP RRK IP IL QMKADKVA HVST++ILMKIEAN+HN
Sbjct: 208 MRELGHPISYLVFNRLIILHSSPHRRKIIPRILTQMKADKVARHVSTYNILMKIEANEHN 267

Query: 181 IEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDV 240
           IEGL+KV+ +MK+ +VEPNEVSYC+LATAHAVA+LYTVAE YVEA+EKS+TGNNWSTLDV
Sbjct: 268 IEGLVKVFGEMKQQQVEPNEVSYCLLATAHAVAKLYTVAEAYVEAVEKSITGNNWSTLDV 327

Query: 241 LIILYGYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQ 300
           LIILYGYL K  DLER W  VQELP+VRSKSY+LAIEAFGRI Q++RAEELWLE++S K+
Sbjct: 328 LIILYGYLGKPTDLERTWGIVQELPHVRSKSYMLAIEAFGRIGQLNRAEELWLEIKSKKE 387

Query: 301 LKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFK 360
           LK+TEQ+NS+ISVY K+GFIDKASGL +EM MNGCK NAITYR+LALGC K+ L+EE  K
Sbjct: 388 LKSTEQFNSMISVYSKHGFIDKASGLFREMEMNGCKANAITYRNLALGCLKAGLLEEALK 447

Query: 361 ALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYN 420
            LELG  L  + ++R S PWLETTLSI+EIF+E GDV NAE LFEELK ANYT+YTFVYN
Sbjct: 448 TLELGKGLTISTRIRKSIPWLETTLSIVEIFSENGDVENAEKLFEELKTANYTRYTFVYN 507

Query: 421 TLIKAYVKAKINDPNLLRRMILGGARPDAETYSLLKLAEQFQ 462
           TLIKAYVKAK+ DPNLLRRMILGGARPDAETYSL+KLAEQFQ
Sbjct: 508 TLIKAYVKAKVYDPNLLRRMILGGARPDAETYSLMKLAEQFQ 549


>gi|255584236|ref|XP_002532856.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223527393|gb|EEF29534.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 521

 Score =  762 bits (1968), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 357/461 (77%), Positives = 408/461 (88%)

Query: 1   IERLPRGEPVGSAFQSWMREGFPVHRGEIFHSINRLRKLQLNKRALEVMEWVIRERPYRP 60
           IE+LPRGEP+G AFQSWMREGFP+HRG++FH+INRLRKL+LNKRALEVMEWVIRERPYRP
Sbjct: 59  IEKLPRGEPIGLAFQSWMREGFPIHRGDVFHAINRLRKLKLNKRALEVMEWVIRERPYRP 118

Query: 61  KELDYSYLLEFTIKNHGISQGEKLFCCIPKDYQNELLYNNLVIACLDKGVIKLSLEYMKK 120
           KELDYSYLLEFT K HGIS GEKLF  IP ++QNELLYNNLVIACL+KGVI+LSLEYMKK
Sbjct: 119 KELDYSYLLEFTTKLHGISHGEKLFTRIPTEFQNELLYNNLVIACLEKGVIRLSLEYMKK 178

Query: 121 MRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHN 180
           MR LGH IS+L+FNRLIIL+SSPGRRK IP IL QMKADKV  HVST++ILMKIEAN+HN
Sbjct: 179 MRELGHPISHLIFNRLIILHSSPGRRKMIPKILTQMKADKVVRHVSTYNILMKIEANEHN 238

Query: 181 IEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDV 240
           +EGL+KV+ +MKR EVEPNEVS+CILA AHAVARLYTVAE YVEA+EKS TG+NWSTLDV
Sbjct: 239 VEGLIKVFGEMKRLEVEPNEVSFCILAIAHAVARLYTVAEAYVEAVEKSYTGDNWSTLDV 298

Query: 241 LIILYGYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQ 300
           LIILYGYL KGK L+RIW TV+ELP+VRSKSY+LAIEAFGRI Q+ RAEELWLEM+S+K 
Sbjct: 299 LIILYGYLRKGKKLDRIWGTVKELPHVRSKSYILAIEAFGRIGQLGRAEELWLEMKSLKG 358

Query: 301 LKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFK 360
           LK+TEQ+NS++S+YCK G + KA+ + +EM  NGCKPNAIT+RHLALGC K+ LVEE  K
Sbjct: 359 LKSTEQFNSMLSIYCKCGLVKKATDIFREMDRNGCKPNAITFRHLALGCLKAELVEEALK 418

Query: 361 ALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYN 420
            LE+GM   T+ K+++S PWLETT SI+EIFAEKGDV NAE  FEEL KA Y +YTFVYN
Sbjct: 419 TLEMGMDFTTSNKIKNSIPWLETTFSIVEIFAEKGDVANAEKFFEELHKAKYARYTFVYN 478

Query: 421 TLIKAYVKAKINDPNLLRRMILGGARPDAETYSLLKLAEQF 461
           TLIKAYVKAK+  P LLRRMILGGARPDAETYSL+KL EQF
Sbjct: 479 TLIKAYVKAKVYVPYLLRRMILGGARPDAETYSLIKLIEQF 519


>gi|356557435|ref|XP_003547021.1| PREDICTED: pentatricopeptide repeat-containing protein At1g07590,
           mitochondrial-like [Glycine max]
          Length = 507

 Score =  746 bits (1927), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 348/462 (75%), Positives = 408/462 (88%)

Query: 1   IERLPRGEPVGSAFQSWMREGFPVHRGEIFHSINRLRKLQLNKRALEVMEWVIRERPYRP 60
           IE+LP+GE VGSAF+SWMR+G PVH G+IFH+INRLRKL +NKRAL+VMEWVIRERPYRP
Sbjct: 45  IEKLPKGESVGSAFRSWMRDGLPVHGGDIFHAINRLRKLNMNKRALQVMEWVIRERPYRP 104

Query: 61  KELDYSYLLEFTIKNHGISQGEKLFCCIPKDYQNELLYNNLVIACLDKGVIKLSLEYMKK 120
           +ELDYSYL+EFT K HGIS GEKLF  IP ++Q+ELLYNNLVIACLDKGVIKLSLEYMKK
Sbjct: 105 RELDYSYLVEFTTKLHGISHGEKLFSRIPVEFQSELLYNNLVIACLDKGVIKLSLEYMKK 164

Query: 121 MRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHN 180
           MR LG  IS+LVFNRLIIL+SSPGRRK IP +L QMKADKV PHVST++ILMKIEAN+HN
Sbjct: 165 MRELGFPISHLVFNRLIILHSSPGRRKMIPKLLTQMKADKVTPHVSTYNILMKIEANEHN 224

Query: 181 IEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDV 240
           +E L+KV+  MK ++VEPNE+SYCILA AHAVARLYT  E YVEA+EKS+TGNNWSTLDV
Sbjct: 225 LENLVKVFGRMKVAQVEPNEISYCILAIAHAVARLYTATEAYVEAVEKSITGNNWSTLDV 284

Query: 241 LIILYGYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQ 300
           L++LYGYL   K+LER+WAT+QELP++RSKSY+LAIEAFGRI Q++RAEE+WLEM+S K 
Sbjct: 285 LLMLYGYLGNQKELERVWATIQELPSIRSKSYMLAIEAFGRIGQLNRAEEIWLEMKSTKG 344

Query: 301 LKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFK 360
           LK+ EQ+NS++SVYCK+GFID+A+ L K M  +GCKPNAITY  LALGC KS + E+  K
Sbjct: 345 LKSVEQFNSMMSVYCKHGFIDRAAKLYKNMKASGCKPNAITYHQLALGCLKSGMAEQALK 404

Query: 361 ALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYN 420
            L+LG++L  +K+VR+STPWLETTLSI+EIFAEKGDVGN E LFEE  KA Y +YTFVYN
Sbjct: 405 TLDLGLRLTISKRVRNSTPWLETTLSIVEIFAEKGDVGNVERLFEEFHKAKYCRYTFVYN 464

Query: 421 TLIKAYVKAKINDPNLLRRMILGGARPDAETYSLLKLAEQFQ 462
           TLIKAYVKAKI +PNLL+RMILGGARPDAETYSLLK+AEQFQ
Sbjct: 465 TLIKAYVKAKIYNPNLLKRMILGGARPDAETYSLLKIAEQFQ 506


>gi|224106481|ref|XP_002314181.1| predicted protein [Populus trichocarpa]
 gi|222850589|gb|EEE88136.1| predicted protein [Populus trichocarpa]
          Length = 525

 Score =  740 bits (1910), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 347/462 (75%), Positives = 409/462 (88%)

Query: 1   IERLPRGEPVGSAFQSWMREGFPVHRGEIFHSINRLRKLQLNKRALEVMEWVIRERPYRP 60
           IE+LPRGE VG AFQSWM EGFP+HRG++FH+INRLRKL+LNKRALEVMEWV+RERPYR 
Sbjct: 63  IEKLPRGESVGYAFQSWMGEGFPIHRGDVFHTINRLRKLRLNKRALEVMEWVVRERPYRL 122

Query: 61  KELDYSYLLEFTIKNHGISQGEKLFCCIPKDYQNELLYNNLVIACLDKGVIKLSLEYMKK 120
           KELDYSYLLEFT K+HGIS GEKLF  +P ++QNELLYNNLVI+CL+KGVI+LSL+YMKK
Sbjct: 123 KELDYSYLLEFTTKHHGISHGEKLFLHVPSEFQNELLYNNLVISCLEKGVIRLSLDYMKK 182

Query: 121 MRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHN 180
           MR  GH ISYL+FNRLIIL+SSPG RK IP IL QM+ADKV PHVST++ILMKIEAN+HN
Sbjct: 183 MREQGHPISYLIFNRLIILHSSPGSRKMIPKILAQMRADKVVPHVSTYNILMKIEANEHN 242

Query: 181 IEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDV 240
           I+GL+KV++DMKR +VEPNEVS+CILATAHA ARLYTVAE YVEA+EKS +G+NWSTLDV
Sbjct: 243 IDGLVKVFNDMKRFKVEPNEVSFCILATAHAAARLYTVAEAYVEAVEKSCSGDNWSTLDV 302

Query: 241 LIILYGYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQ 300
           LIILYG+L K K+LER W  V ELP+VRSKSY+LAIEA+G+I Q+SRAEELWLEM+S+  
Sbjct: 303 LIILYGHLGKEKELERTWGIVLELPHVRSKSYMLAIEAYGKIGQLSRAEELWLEMKSIHG 362

Query: 301 LKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFK 360
           L++TEQ+NS++SVYCK+G I KA+G  +EM +NGCK N+IT+RHLALGC K+NLVEE  K
Sbjct: 363 LRSTEQFNSMLSVYCKHGLIKKATGNFREMEINGCKANSITFRHLALGCLKANLVEEALK 422

Query: 361 ALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYN 420
            LE+G  L T+ +V++STPWLETTLSIIE+FAEKGDV N E LFEEL KA Y ++TFV+N
Sbjct: 423 TLEMGKNLTTSNRVKNSTPWLETTLSIIELFAEKGDVVNVEKLFEELAKAKYIRHTFVFN 482

Query: 421 TLIKAYVKAKINDPNLLRRMILGGARPDAETYSLLKLAEQFQ 462
            LIKAYVKAKI  PNLLRRMILGGARPDAETYSL+KLAEQF+
Sbjct: 483 ILIKAYVKAKIYSPNLLRRMILGGARPDAETYSLIKLAEQFR 524


>gi|356547249|ref|XP_003542028.1| PREDICTED: pentatricopeptide repeat-containing protein At1g07590,
           mitochondrial-like [Glycine max]
          Length = 507

 Score =  737 bits (1903), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 345/462 (74%), Positives = 405/462 (87%)

Query: 1   IERLPRGEPVGSAFQSWMREGFPVHRGEIFHSINRLRKLQLNKRALEVMEWVIRERPYRP 60
           IERLP+GE VG+AF SWMR+G PVH  ++FH++NRLRKL +NKRAL+VMEWVIRERPYRP
Sbjct: 45  IERLPKGESVGAAFCSWMRDGLPVHGVDVFHAVNRLRKLNMNKRALQVMEWVIRERPYRP 104

Query: 61  KELDYSYLLEFTIKNHGISQGEKLFCCIPKDYQNELLYNNLVIACLDKGVIKLSLEYMKK 120
           KELDYSYL+EFT K HGIS GEKLF  IP ++QNELLYNNLVIACLDKGVIKLSLEYMKK
Sbjct: 105 KELDYSYLVEFTTKLHGISHGEKLFSRIPVEFQNELLYNNLVIACLDKGVIKLSLEYMKK 164

Query: 121 MRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHN 180
           MR LG  IS+LVFNRLIIL+SSPGRRK IP +L QMKADKV PHVST++ILMKIEAN+HN
Sbjct: 165 MRELGFLISHLVFNRLIILHSSPGRRKMIPKLLTQMKADKVTPHVSTYNILMKIEANEHN 224

Query: 181 IEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDV 240
           +E L+K +S MK ++V PNE+SYCILA AHAVARLYT  E YVEA+EKS+TGNNWSTLDV
Sbjct: 225 LENLVKFFSRMKVAQVAPNEISYCILAIAHAVARLYTATEAYVEAVEKSITGNNWSTLDV 284

Query: 241 LIILYGYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQ 300
           L++LYGYL   K+LER+WAT++ELP+VRSKSY+LAIEAFGRI Q+++AEELWLEM+S K 
Sbjct: 285 LLMLYGYLGNQKELERVWATIRELPSVRSKSYMLAIEAFGRIGQLNQAEELWLEMESTKG 344

Query: 301 LKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFK 360
           LK+ EQ+NS++SVYCK+GFI KA+ L K M  +GCKPNAITYR LALGC KS + E+G K
Sbjct: 345 LKSVEQFNSMMSVYCKHGFIGKAAKLYKNMKASGCKPNAITYRQLALGCLKSGMAEQGLK 404

Query: 361 ALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYN 420
            L+LG++L  +K+VR+S PWLETTLSI+EIFAEKGD+GN E LFEE  K+ Y +YTFVYN
Sbjct: 405 TLDLGLRLTISKRVRNSIPWLETTLSIVEIFAEKGDMGNVERLFEEFHKSKYCRYTFVYN 464

Query: 421 TLIKAYVKAKINDPNLLRRMILGGARPDAETYSLLKLAEQFQ 462
           TLIKAYVKAKI DPNLL+RMILGGARPDAETYSLLK+AEQF+
Sbjct: 465 TLIKAYVKAKIYDPNLLKRMILGGARPDAETYSLLKIAEQFR 506


>gi|449450908|ref|XP_004143204.1| PREDICTED: pentatricopeptide repeat-containing protein At1g07590,
           mitochondrial-like [Cucumis sativus]
 gi|449517541|ref|XP_004165804.1| PREDICTED: pentatricopeptide repeat-containing protein At1g07590,
           mitochondrial-like [Cucumis sativus]
          Length = 527

 Score =  713 bits (1840), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 336/463 (72%), Positives = 403/463 (87%), Gaps = 1/463 (0%)

Query: 1   IERLPRGEPVGSAFQSWMREGFPVHRGEIFHSINRLRKLQLNKRALEVMEWVIRERPYRP 60
           IER+P+GE VG AF+SWM +GFP+HRG+IFH+INRLRKL+ NKRALEVMEWVIRE+PYR 
Sbjct: 64  IERIPKGELVGYAFRSWMGDGFPIHRGDIFHAINRLRKLERNKRALEVMEWVIREKPYRI 123

Query: 61  KELDYSYLLEFTIKNHGISQGEKLFCCIPKDYQNELLYNNLVIACLDKGVIKLSLEYMKK 120
            ELDYSYLLEFTIK+HGISQGEKLF  IP ++Q ELL+NNLVIACLDKG I+LSL YM+K
Sbjct: 124 NELDYSYLLEFTIKHHGISQGEKLFSNIPVEFQGELLFNNLVIACLDKGAIRLSLAYMRK 183

Query: 121 MRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHN 180
           MR +GHSIS+LVFNRLIIL+SS  RRK IP IL QMKADKV  HVST++ILMKIEAN+HN
Sbjct: 184 MREVGHSISHLVFNRLIILHSSFRRRKIIPKILSQMKADKVPLHVSTYNILMKIEANEHN 243

Query: 181 IEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDV 240
           IEGLM+V+SDM+R++VEPNEVSYCI+ATAHAVA+LYTV E YVEALEKS+ GNNWST DV
Sbjct: 244 IEGLMRVFSDMRRAKVEPNEVSYCIVATAHAVAKLYTVVEAYVEALEKSIAGNNWSTYDV 303

Query: 241 LIILYGYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQ 300
           LIILYGYL K K+LER W  +Q  P++ SKS++LAIEAFGRI  +SRAEELWLEM++ + 
Sbjct: 304 LIILYGYLNKEKELERTWGIIQGFPHIPSKSFILAIEAFGRIGLLSRAEELWLEMKTKRG 363

Query: 301 LKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFK 360
           +KAT+Q+NS++SVYC++G I KA+ + +++  NGCKPNAIT+RHLA GC K+ LVEE  K
Sbjct: 364 IKATDQFNSILSVYCRHGLIKKATEIFRKIEANGCKPNAITFRHLAFGCLKAGLVEEALK 423

Query: 361 ALELGMKLI-TTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVY 419
            L+LG     +TK VR STPWLETTLS+IEI AE+GD+ N E LF+ELK+A YT+YTFVY
Sbjct: 424 TLDLGSNTTSSTKIVRKSTPWLETTLSMIEILAERGDIENTEKLFKELKEAKYTRYTFVY 483

Query: 420 NTLIKAYVKAKINDPNLLRRMILGGARPDAETYSLLKLAEQFQ 462
           NTLIKAYVKAKI++PNLLRRMI+GGARPD+ETYSL+KL+EQFQ
Sbjct: 484 NTLIKAYVKAKIHNPNLLRRMIVGGARPDSETYSLIKLSEQFQ 526


>gi|15222438|ref|NP_172238.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75163930|sp|Q940Q2.1|PPR19_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g07590, mitochondrial; Flags: Precursor
 gi|15809864|gb|AAL06860.1| At1g07590/F22G5_2 [Arabidopsis thaliana]
 gi|332190025|gb|AEE28146.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 534

 Score =  678 bits (1749), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 315/462 (68%), Positives = 387/462 (83%)

Query: 1   IERLPRGEPVGSAFQSWMREGFPVHRGEIFHSINRLRKLQLNKRALEVMEWVIRERPYRP 60
           IE+LP+G  VGSA QSWM +GFPVH G+++H+INRLRKL  NKRALE+MEW+IRERPYR 
Sbjct: 72  IEKLPKGVTVGSALQSWMGDGFPVHGGDVYHAINRLRKLGRNKRALELMEWIIRERPYRL 131

Query: 61  KELDYSYLLEFTIKNHGISQGEKLFCCIPKDYQNELLYNNLVIACLDKGVIKLSLEYMKK 120
            EL+YSYLLEFT+K HG+SQGEKLF  +P+++QNELLYNNLVIACLD+GVI+L+LEYMKK
Sbjct: 132 GELEYSYLLEFTVKLHGVSQGEKLFTRVPQEFQNELLYNNLVIACLDQGVIRLALEYMKK 191

Query: 121 MRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHN 180
           MR LG+  S+LV+NRLII NS+PGRRK I   L  MKADK  PHVST+HILMK+EAN+HN
Sbjct: 192 MRELGYRTSHLVYNRLIIRNSAPGRRKLIAKDLALMKADKATPHVSTYHILMKLEANEHN 251

Query: 181 IEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDV 240
           I+G++K +  MK++ VEPNEVSYCILA AHAVARLYTVAE Y E +EKS+TG+NWSTLD+
Sbjct: 252 IDGVLKAFDGMKKAGVEPNEVSYCILAMAHAVARLYTVAEAYTEEIEKSITGDNWSTLDI 311

Query: 241 LIILYGYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQ 300
           L+ILYG L K K+L R W  ++   +VRSKSY+LA EAF R+  + RAEELWLEM++VK 
Sbjct: 312 LMILYGRLGKEKELARTWNVIRGFHHVRSKSYLLATEAFARVGNLDRAEELWLEMKNVKG 371

Query: 301 LKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFK 360
           LK TEQ+NS++SVYCK+G I+KA G+ +EM+ NG KPN+ITYRHLALGC K+ L++E  K
Sbjct: 372 LKETEQFNSLLSVYCKDGLIEKAIGVFREMTGNGFKPNSITYRHLALGCAKAKLMKEALK 431

Query: 361 ALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYN 420
            +E+G+ L T+K + SSTPWLETTLSIIE FAEKGDV N+E LFEE+K A Y +Y FVYN
Sbjct: 432 NIEMGLNLKTSKSIGSSTPWLETTLSIIECFAEKGDVENSEKLFEEVKNAKYNRYAFVYN 491

Query: 421 TLIKAYVKAKINDPNLLRRMILGGARPDAETYSLLKLAEQFQ 462
            L KAYVKAK+ DPNL +RM+LGGARPDAE+YSLLKL EQ++
Sbjct: 492 ALFKAYVKAKVYDPNLFKRMVLGGARPDAESYSLLKLVEQYK 533


>gi|297849054|ref|XP_002892408.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297338250|gb|EFH68667.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 536

 Score =  676 bits (1745), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 314/462 (67%), Positives = 386/462 (83%)

Query: 1   IERLPRGEPVGSAFQSWMREGFPVHRGEIFHSINRLRKLQLNKRALEVMEWVIRERPYRP 60
           IE+LP+G  VGSA QSWM +GFPVH G+++H+INRLRKL  NKRALE+MEW+IRERPYRP
Sbjct: 74  IEKLPKGVTVGSALQSWMGDGFPVHGGDVYHAINRLRKLGRNKRALELMEWIIRERPYRP 133

Query: 61  KELDYSYLLEFTIKNHGISQGEKLFCCIPKDYQNELLYNNLVIACLDKGVIKLSLEYMKK 120
            EL+YSYLLEFT+K HG+SQGEKLF  +P+++QNELLYNNLVIACLD+GVI+L+LEYMKK
Sbjct: 134 GELEYSYLLEFTVKLHGVSQGEKLFTRVPQEFQNELLYNNLVIACLDQGVIRLALEYMKK 193

Query: 121 MRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHN 180
           MR LG+  S+LV+NRLII NS+PGRRK I   L  MKADK  PHVST+HILMK+EAN+HN
Sbjct: 194 MRELGYRTSHLVYNRLIIRNSAPGRRKLIAKDLALMKADKATPHVSTYHILMKLEANEHN 253

Query: 181 IEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDV 240
           I+G++K +  MK++ VEPNEVSYCILA AHAVARLYTVAE Y E +EKS+TGNNWSTLD+
Sbjct: 254 IDGVLKAFDGMKKAGVEPNEVSYCILAMAHAVARLYTVAEAYTEEIEKSVTGNNWSTLDI 313

Query: 241 LIILYGYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQ 300
           L+ILYG L K K+L R W  ++   +VRSKSY+LA EAF ++  + RAEELWLEM++V+ 
Sbjct: 314 LMILYGRLGKEKELVRTWNVIRGFHHVRSKSYLLATEAFAQVGNLDRAEELWLEMKNVRG 373

Query: 301 LKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFK 360
           LK TEQ+NS++SVYCK+G I+KA G+ +EM  +G KPN+ITYRHLALGC K+ L++E  K
Sbjct: 374 LKETEQFNSLLSVYCKDGLIEKAIGVFREMMGDGFKPNSITYRHLALGCAKAKLMKEALK 433

Query: 361 ALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYN 420
            +E+G  L T+  +RSSTPWLETTLSIIE FAEKGDV N+E LFEE+K A Y +Y FVYN
Sbjct: 434 NIEMGSNLKTSNSIRSSTPWLETTLSIIECFAEKGDVENSEKLFEEVKNAKYNRYAFVYN 493

Query: 421 TLIKAYVKAKINDPNLLRRMILGGARPDAETYSLLKLAEQFQ 462
            L KAYVKAK+ DPNL +RM+LGGARPDAE+YSLLKL EQ++
Sbjct: 494 ALFKAYVKAKVYDPNLFKRMVLGGARPDAESYSLLKLVEQYK 535


>gi|8778536|gb|AAF79544.1|AC022464_2 F22G5.3 [Arabidopsis thaliana]
          Length = 555

 Score =  665 bits (1717), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 315/483 (65%), Positives = 387/483 (80%), Gaps = 21/483 (4%)

Query: 1   IERLPRGEPVGSAFQSWMREGFPVHRGEIFHSINRLRKLQLNKRALE------------- 47
           IE+LP+G  VGSA QSWM +GFPVH G+++H+INRLRKL  NKRALE             
Sbjct: 72  IEKLPKGVTVGSALQSWMGDGFPVHGGDVYHAINRLRKLGRNKRALEMSNLGMLLDRNEF 131

Query: 48  --------VMEWVIRERPYRPKELDYSYLLEFTIKNHGISQGEKLFCCIPKDYQNELLYN 99
                   +MEW+IRERPYR  EL+YSYLLEFT+K HG+SQGEKLF  +P+++QNELLYN
Sbjct: 132 LLMKILLNLMEWIIRERPYRLGELEYSYLLEFTVKLHGVSQGEKLFTRVPQEFQNELLYN 191

Query: 100 NLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKAD 159
           NLVIACLD+GVI+L+LEYMKKMR LG+  S+LV+NRLII NS+PGRRK I   L  MKAD
Sbjct: 192 NLVIACLDQGVIRLALEYMKKMRELGYRTSHLVYNRLIIRNSAPGRRKLIAKDLALMKAD 251

Query: 160 KVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVA 219
           K  PHVST+HILMK+EAN+HNI+G++K +  MK++ VEPNEVSYCILA AHAVARLYTVA
Sbjct: 252 KATPHVSTYHILMKLEANEHNIDGVLKAFDGMKKAGVEPNEVSYCILAMAHAVARLYTVA 311

Query: 220 ETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSKSYVLAIEAF 279
           E Y E +EKS+TG+NWSTLD+L+ILYG L K K+L R W  ++   +VRSKSY+LA EAF
Sbjct: 312 EAYTEEIEKSITGDNWSTLDILMILYGRLGKEKELARTWNVIRGFHHVRSKSYLLATEAF 371

Query: 280 GRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNA 339
            R+  + RAEELWLEM++VK LK TEQ+NS++SVYCK+G I+KA G+ +EM+ NG KPN+
Sbjct: 372 ARVGNLDRAEELWLEMKNVKGLKETEQFNSLLSVYCKDGLIEKAIGVFREMTGNGFKPNS 431

Query: 340 ITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGN 399
           ITYRHLALGC K+ L++E  K +E+G+ L T+K + SSTPWLETTLSIIE FAEKGDV N
Sbjct: 432 ITYRHLALGCAKAKLMKEALKNIEMGLNLKTSKSIGSSTPWLETTLSIIECFAEKGDVEN 491

Query: 400 AENLFEELKKANYTKYTFVYNTLIKAYVKAKINDPNLLRRMILGGARPDAETYSLLKLAE 459
           +E LFEE+K A Y +Y FVYN L KAYVKAK+ DPNL +RM+LGGARPDAE+YSLLKL E
Sbjct: 492 SEKLFEEVKNAKYNRYAFVYNALFKAYVKAKVYDPNLFKRMVLGGARPDAESYSLLKLVE 551

Query: 460 QFQ 462
           Q++
Sbjct: 552 QYK 554


>gi|242078281|ref|XP_002443909.1| hypothetical protein SORBIDRAFT_07g004200 [Sorghum bicolor]
 gi|241940259|gb|EES13404.1| hypothetical protein SORBIDRAFT_07g004200 [Sorghum bicolor]
          Length = 521

 Score =  607 bits (1566), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 284/460 (61%), Positives = 373/460 (81%)

Query: 3   RLPRGEPVGSAFQSWMREGFPVHRGEIFHSINRLRKLQLNKRALEVMEWVIRERPYRPKE 62
           R+ R   VG+A + WM +G  VHRG +FH+INRLR+ +L++ AL+VMEW++RERPY+  E
Sbjct: 61  RVERAASVGAAMRGWMADGRAVHRGHVFHAINRLRRHRLHRTALQVMEWIVRERPYKLSE 120

Query: 63  LDYSYLLEFTIKNHGISQGEKLFCCIPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMR 122
           LDYSYLLEFT K HGIS+ E LF  +P++YQ ELLYNNLV+A LD  +IK S  YM+KMR
Sbjct: 121 LDYSYLLEFTAKVHGISEAESLFLRVPQEYQKELLYNNLVMAALDLDLIKHSYAYMRKMR 180

Query: 123 VLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIE 182
            L   IS  V+NRLIIL+SSP RRKTI  IL QMKAD+V PH ST++IL+KI+AN+HNI+
Sbjct: 181 ELSLPISPYVYNRLIILHSSPSRRKTISKILYQMKADRVTPHTSTYNILLKIQANEHNID 240

Query: 183 GLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLI 242
           GL +V+SDMKR+++EPNE++Y ILA +HAVARLYTV  TYVEA+E SMTG NWSTL++L+
Sbjct: 241 GLARVFSDMKRAKIEPNEITYGILAISHAVARLYTVCHTYVEAIENSMTGTNWSTLEILL 300

Query: 243 ILYGYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLK 302
           ILYGYL K K+L+R W  +Q+LP+VRSKS+ +AIEAFG++  + +AE++W++++S K+L 
Sbjct: 301 ILYGYLGKEKELKRTWEIMQDLPHVRSKSFTVAIEAFGKVGSIDQAEKIWVQIKSTKKLS 360

Query: 303 ATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKAL 362
            TEQ+NS++SVYC++G +DKAS + KEM  NGC+PNAITYRHLALGC KS LV+E    +
Sbjct: 361 LTEQFNSILSVYCRHGVVDKASSVFKEMRANGCQPNAITYRHLALGCLKSGLVKEALNTI 420

Query: 363 ELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTL 422
           ++G K + TKKVRSSTPWLETT  ++E FAE GD+ NA+ L+ EL ++ Y++ +FVYNTL
Sbjct: 421 DMGKKEVVTKKVRSSTPWLETTHLLLENFAEIGDLENAKRLYSELNESKYSRNSFVYNTL 480

Query: 423 IKAYVKAKINDPNLLRRMILGGARPDAETYSLLKLAEQFQ 462
           +KAYVKAK+ +P+LLR MIL GA PDAETYSLL+L EQF+
Sbjct: 481 LKAYVKAKVYEPDLLRTMILRGAMPDAETYSLLRLIEQFK 520


>gi|413917311|gb|AFW57243.1| hypothetical protein ZEAMMB73_018964 [Zea mays]
          Length = 514

 Score =  592 bits (1527), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 281/460 (61%), Positives = 368/460 (80%)

Query: 3   RLPRGEPVGSAFQSWMREGFPVHRGEIFHSINRLRKLQLNKRALEVMEWVIRERPYRPKE 62
           R+ R   VG+A + WM +G  VHRG +FH+INRLR+ +L++ AL+VMEW++RERPY+  E
Sbjct: 54  RVERAASVGAAMRGWMADGRAVHRGHVFHAINRLRRHRLHRTALQVMEWIVRERPYKLSE 113

Query: 63  LDYSYLLEFTIKNHGISQGEKLFCCIPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMR 122
           LDYSYLLEFT K HGIS+ E LF  +P++ + ELLYNNLV+A LD   IK S  YM+KMR
Sbjct: 114 LDYSYLLEFTAKVHGISEAESLFLRVPQECRKELLYNNLVMAALDLNHIKHSYAYMRKMR 173

Query: 123 VLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIE 182
            L   IS  V+NRLIIL+SSPGRRKTI  IL QMKAD+V PH ST++IL+KI+AN+HNI+
Sbjct: 174 ELSLPISPYVYNRLIILHSSPGRRKTISKILSQMKADRVVPHTSTYNILLKIQANEHNID 233

Query: 183 GLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLI 242
           GL +V++ MKR+++EPNE++Y ILA AHAVARLYTV  TYVEA+E SMTG NWSTL++L+
Sbjct: 234 GLARVFNGMKRAKIEPNEITYGILAIAHAVARLYTVCHTYVEAIENSMTGTNWSTLEILL 293

Query: 243 ILYGYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLK 302
           ILYGYL K K+L+R W  +Q+LP++RSKS+ LAIEAFG++  + +AE++W+ ++S K+L 
Sbjct: 294 ILYGYLGKEKELKRTWEIMQDLPHIRSKSFTLAIEAFGKVGSIDQAEKIWIHIKSTKKLS 353

Query: 303 ATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKAL 362
            TEQ+NS++SVYC++G +DKAS + KEM  NGC+PNAITYRHLALGC KS LV+E    +
Sbjct: 354 LTEQFNSMLSVYCRHGVVDKASSVFKEMRANGCQPNAITYRHLALGCLKSGLVKEALNTI 413

Query: 363 ELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTL 422
           ++G K + TKKVRSSTPWLETT  ++E FAE GD+ NA+ L+ EL ++ Y+  +FVYNTL
Sbjct: 414 DMGKKEVVTKKVRSSTPWLETTHLLLENFAEIGDLENAKRLYSELNESKYSLNSFVYNTL 473

Query: 423 IKAYVKAKINDPNLLRRMILGGARPDAETYSLLKLAEQFQ 462
           +KAYVKAK+ +P+L R MIL GA PDAETYSLL+L EQF+
Sbjct: 474 LKAYVKAKVYEPDLSRTMILRGAMPDAETYSLLRLIEQFK 513


>gi|357139769|ref|XP_003571450.1| PREDICTED: pentatricopeptide repeat-containing protein At1g07590,
           mitochondrial-like [Brachypodium distachyon]
          Length = 517

 Score =  586 bits (1510), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 275/461 (59%), Positives = 370/461 (80%)

Query: 2   ERLPRGEPVGSAFQSWMREGFPVHRGEIFHSINRLRKLQLNKRALEVMEWVIRERPYRPK 61
           +RL R     +A + WM  G  VHRG +FH+INRLR+ +L++  L+VMEWVIRERPY+  
Sbjct: 56  QRLERASSACAAIRGWMAAGRAVHRGHVFHAINRLRRRRLHRTGLQVMEWVIRERPYKLS 115

Query: 62  ELDYSYLLEFTIKNHGISQGEKLFCCIPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKM 121
           ELDYSYLLEFT K HGIS+ E LF  IP++Y+NELLYNNLV+ACL+  +IKLS  YM+KM
Sbjct: 116 ELDYSYLLEFTAKVHGISEAESLFLRIPQEYRNELLYNNLVMACLELSLIKLSYGYMRKM 175

Query: 122 RVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNI 181
           R L   IS  V+NRLIIL+SS GRRKTIP IL QMKA KV PH ST++IL+KI+AN+HNI
Sbjct: 176 RELSLPISPYVYNRLIILHSSEGRRKTIPKILAQMKASKVTPHTSTYNILLKIQANEHNI 235

Query: 182 EGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVL 241
           +G+ +V++DMKR++VEPNE++Y ILA +HAVARLYTV++TY+EA++ SMTG NWST ++L
Sbjct: 236 DGVARVFNDMKRAKVEPNEITYGILAISHAVARLYTVSQTYIEAIKNSMTGTNWSTQEIL 295

Query: 242 IILYGYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQL 301
           +ILYGYL K K+L+  W  +Q LP++RSKS+ LAIEAFG+I  + +AEE+W E++S ++L
Sbjct: 296 LILYGYLGKEKELKMTWKLMQVLPHIRSKSFTLAIEAFGKIGSIEQAEEIWGEIKSARKL 355

Query: 302 KATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKA 361
           + TEQ+NS++SVYC++G +DKAS + KEM  +GC+PNAITYRHLALGC K+ LV++    
Sbjct: 356 RLTEQFNSMLSVYCRHGVVDKASAVFKEMRASGCQPNAITYRHLALGCLKAGLVKQALNT 415

Query: 362 LELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNT 421
           +++G K + T+KVR+STPWLETT  ++E FAE GD+ NA+ ++ EL ++ Y + +FVYNT
Sbjct: 416 MDMGKKEVVTRKVRNSTPWLETTHMLLENFAEIGDLENAKIVYAELNESKYCRNSFVYNT 475

Query: 422 LIKAYVKAKINDPNLLRRMILGGARPDAETYSLLKLAEQFQ 462
           L+KAYVKAK+ +PN +R MIL GA PDAET+SLL+L EQ++
Sbjct: 476 LLKAYVKAKVYEPNFVRTMILRGAMPDAETHSLLRLIEQYK 516


>gi|125602283|gb|EAZ41608.1| hypothetical protein OsJ_26140 [Oryza sativa Japonica Group]
          Length = 524

 Score =  569 bits (1467), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 274/461 (59%), Positives = 367/461 (79%)

Query: 2   ERLPRGEPVGSAFQSWMREGFPVHRGEIFHSINRLRKLQLNKRALEVMEWVIRERPYRPK 61
           +R+ R   V +A + WM +G  VHRG +FH++NRLR+ +L++ AL+VMEW++RERPY+  
Sbjct: 56  QRVERSASVCAAIRGWMGDGRAVHRGHVFHAVNRLRRRRLHRAALQVMEWIMRERPYKLS 115

Query: 62  ELDYSYLLEFTIKNHGISQGEKLFCCIPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKM 121
           ELDYSYLLEFT K HGIS+ E LF  IP++YQNELLYNNLV+ACLD G+IKL+  Y +KM
Sbjct: 116 ELDYSYLLEFTAKVHGISEAESLFLRIPQEYQNELLYNNLVMACLDLGLIKLAYGYKRKM 175

Query: 122 RVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNI 181
           R L   IS  V+NRLIIL+SSPGR+KTI  IL QMK D+V PH ST++IL+KI+AN+HNI
Sbjct: 176 RELSLPISPYVYNRLIILHSSPGRQKTISKILAQMKGDRVTPHTSTYNILLKIKANEHNI 235

Query: 182 EGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVL 241
           +G+ +V++DMKR++VEPNE++Y ILA AHAVARLYTV+ TYVEA+E SMTG NWSTL++L
Sbjct: 236 DGVARVFNDMKRAKVEPNEITYGILAIAHAVARLYTVSHTYVEAIENSMTGTNWSTLEIL 295

Query: 242 IILYGYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQL 301
           +ILYGY  K K+L+  W  +Q LP++R KS++LAIEAFG++  + +AEE+W + +S ++ 
Sbjct: 296 LILYGYHGKAKELKMTWDLMQGLPHIRPKSFILAIEAFGKVGSIDQAEEIWGKFESTRKP 355

Query: 302 KATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKA 361
           K TEQ+NS++SVYC++G +DKAS + KEM  NGC+PNAITYRHL LGC K+ +V+E  K 
Sbjct: 356 KLTEQFNSILSVYCRHGLVDKASAVFKEMRANGCQPNAITYRHLTLGCLKAGIVKEALKT 415

Query: 362 LELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNT 421
           +++  K + TKKV+SSTPWLETT  I+E FAE GD+ NA+ +F+EL ++ Y + +FVYNT
Sbjct: 416 MDIAKKEVVTKKVKSSTPWLETTHMILESFAENGDLVNAKRVFDELNESKYCRNSFVYNT 475

Query: 422 LIKAYVKAKINDPNLLRRMILGGARPDAETYSLLKLAEQFQ 462
           L+KA+VKAK+ +P+LLR MIL GA PDAETYSLL +    Q
Sbjct: 476 LLKAHVKAKVYEPDLLRAMILRGAMPDAETYSLLGIDRAVQ 516


>gi|218200516|gb|EEC82943.1| hypothetical protein OsI_27919 [Oryza sativa Indica Group]
          Length = 500

 Score =  533 bits (1373), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 264/461 (57%), Positives = 355/461 (77%), Gaps = 18/461 (3%)

Query: 2   ERLPRGEPVGSAFQSWMREGFPVHRGEIFHSINRLRKLQLNKRALEVMEWVIRERPYRPK 61
           +R+ R   V +A + WM +G  VHRG +FH++NRLR+ +L++ AL+VMEW++RERPY+  
Sbjct: 57  QRVERSASVCAAIRGWMGDGRAVHRGHVFHAVNRLRRRRLHRAALQVMEWIMRERPYKLS 116

Query: 62  ELDYSYLLEFTIKNHGISQGEKLFCCIPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKM 121
           ELDYSYLLEFT K HGIS+ E LF  IP++YQNELLYNNLV+ACLD G+IKL+  Y +KM
Sbjct: 117 ELDYSYLLEFTAKVHGISEAESLFLRIPQEYQNELLYNNLVMACLDLGLIKLAYGYKRKM 176

Query: 122 RVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNI 181
           R L   IS  V+NRLIIL+SSPGR+KTI  IL QMK D+V PH ST++IL+KI+AN+HNI
Sbjct: 177 RELSLPISPYVYNRLIILHSSPGRQKTISKILAQMKGDRVTPHTSTYNILLKIKANEHNI 236

Query: 182 EGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVL 241
           +G+ +V++DMKR++VEPNE++Y ILA AHAVARLYTV+ TYVEA+E SMTG NWSTL++L
Sbjct: 237 DGVARVFNDMKRAKVEPNEITYGILAIAHAVARLYTVSHTYVEAIENSMTGTNWSTLEIL 296

Query: 242 IILYGYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQL 301
           +ILYGY  K K+L+  W  +Q LP++R KS++LAIEAFG++  + +AEE+W + +S ++ 
Sbjct: 297 LILYGYHGKAKELKMTWDLMQGLPHIRPKSFILAIEAFGKVGSIDQAEEIWGKFESTRKP 356

Query: 302 KATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKA 361
           K TEQ+NS++SVYC++G +DKAS + KEM  NGC                  +V+E  K 
Sbjct: 357 KLTEQFNSILSVYCRHGLVDKASAVFKEMRANGC------------------IVKEALKT 398

Query: 362 LELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNT 421
           +++  K + TKKV+SSTPWLETT  I+E FAE GD+ NA+ +F+EL ++ Y + +FVYNT
Sbjct: 399 MDIAKKEVVTKKVKSSTPWLETTHMILESFAENGDLVNAKRVFDELNESKYCRNSFVYNT 458

Query: 422 LIKAYVKAKINDPNLLRRMILGGARPDAETYSLLKLAEQFQ 462
           L+KA+VKAK+ +P+LLR MIL GA PDAETYSLL L EQF+
Sbjct: 459 LLKAHVKAKVYEPDLLRAMILRGAMPDAETYSLLGLIEQFK 499


>gi|297746078|emb|CBI16134.3| unnamed protein product [Vitis vinifera]
          Length = 453

 Score =  457 bits (1175), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 235/387 (60%), Positives = 278/387 (71%), Gaps = 41/387 (10%)

Query: 1   IERLPRGEPVGSAFQSWMREGFPVHRGEIFHSINRLRKLQLNKRALEVMEWVIRERPYRP 60
           IE+LPRGEPVG AFQSWM EG P+HRG IFH+INRLRKL+ NKRALEVMEWV+RERPYRP
Sbjct: 64  IEKLPRGEPVGLAFQSWMGEGCPIHRGHIFHAINRLRKLKFNKRALEVMEWVVRERPYRP 123

Query: 61  KELDYSYLLEFTIKNHGISQGEKLFCCIPKDYQNELLYNNLVIACLDKGVIKLSLEYMKK 120
           KELDYSYLLEFT K HGISQGEKLF  +P ++QNELLYNNLVIACLDKGVI+LSL YMKK
Sbjct: 124 KELDYSYLLEFTTKLHGISQGEKLFSHVPLEFQNELLYNNLVIACLDKGVIRLSLAYMKK 183

Query: 121 MRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHN 180
           MR LGH ISYLVFNRLIIL+SSP RRK IP IL QMKADKVA HVST++ILMKIEAN+HN
Sbjct: 184 MRELGHPISYLVFNRLIILHSSPHRRKIIPRILTQMKADKVARHVSTYNILMKIEANEHN 243

Query: 181 IEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDV 240
           IEGL+KV+ +MK+ +VEPNEVSYC+LATAHAVA+LYTVAE YVEA+EKS+TGNNWSTLDV
Sbjct: 244 IEGLVKVFGEMKQQQVEPNEVSYCLLATAHAVAKLYTVAEAYVEAVEKSITGNNWSTLDV 303

Query: 241 LIILYGYLAKGKDLE-------------------------RIWATVQEL---------PN 266
           LIILYGYL K  DLE                         + W  ++ L           
Sbjct: 304 LIILYGYLGKPTDLEPLVRNKVKKRVEINRAIQFNDICLFQTWEALKTLELGKGLTISTR 363

Query: 267 VRS-----KSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFID 321
           +R      ++ +  +E F     V  AE+L+ E+++    + T  YN++I  Y K    D
Sbjct: 364 IRKSIPWLETTLSIVEIFSENGDVENAEKLFEELKTANYTRYTFVYNTLIKAYVKAKVYD 423

Query: 322 KASGLLKEMSMNGCKPNAITYRHLALG 348
               LL+ M + G +P+A TY  + L 
Sbjct: 424 --PNLLRRMILGGARPDAETYSLMKLA 448


>gi|345288455|gb|AEN80719.1| AT1G07590-like protein, partial [Capsella rubella]
 gi|345288457|gb|AEN80720.1| AT1G07590-like protein, partial [Capsella rubella]
 gi|345288459|gb|AEN80721.1| AT1G07590-like protein, partial [Capsella rubella]
 gi|345288461|gb|AEN80722.1| AT1G07590-like protein, partial [Capsella rubella]
 gi|345288463|gb|AEN80723.1| AT1G07590-like protein, partial [Capsella rubella]
 gi|345288465|gb|AEN80724.1| AT1G07590-like protein, partial [Capsella rubella]
 gi|345288467|gb|AEN80725.1| AT1G07590-like protein, partial [Capsella rubella]
 gi|345288469|gb|AEN80726.1| AT1G07590-like protein, partial [Capsella rubella]
          Length = 195

 Score =  270 bits (689), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 128/195 (65%), Positives = 156/195 (80%)

Query: 110 VIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFH 169
           VI+L+L YMKKMR LGH  S+LV+NRLII NS+PGRRK I   L  MKADK  PHVST+H
Sbjct: 1   VIRLALGYMKKMRELGHRTSHLVYNRLIIRNSAPGRRKLIAKDLALMKADKAIPHVSTYH 60

Query: 170 ILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKS 229
           ILMK+EAN+HNI+G++K +  MK++ VEPNEVSYCILA AHAVARLYTVAE Y E +EKS
Sbjct: 61  ILMKLEANEHNIDGVLKAFDGMKKAGVEPNEVSYCILAMAHAVARLYTVAEAYTEEIEKS 120

Query: 230 MTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAE 289
           +TG+NWSTLD+L+ILYG L K K+L R W  ++   +VRSKSY+LA EAF R+  + RAE
Sbjct: 121 VTGDNWSTLDILMILYGRLGKEKELARTWNVIRGFHHVRSKSYLLATEAFARVGNLDRAE 180

Query: 290 ELWLEMQSVKQLKAT 304
           ELWLEM+ V+ LK T
Sbjct: 181 ELWLEMKDVRGLKET 195


>gi|295828268|gb|ADG37803.1| AT1G07590-like protein [Capsella grandiflora]
          Length = 194

 Score =  265 bits (676), Expect = 5e-68,   Method: Compositional matrix adjust.
 Identities = 125/194 (64%), Positives = 154/194 (79%)

Query: 112 KLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHIL 171
           +L+L YMKKMR LGH  S+LV+NRLII NS+PGRRK I   L  MKADK  PHVST+HIL
Sbjct: 1   RLALGYMKKMRELGHRTSHLVYNRLIIRNSAPGRRKLIAKDLALMKADKAIPHVSTYHIL 60

Query: 172 MKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMT 231
           MK+EAN+HNI+G++K +  MK++ VEPNEVSYCI+A AHAVARLYTVAE Y E +EKS+T
Sbjct: 61  MKLEANEHNIDGVLKAFDGMKKAGVEPNEVSYCIVAMAHAVARLYTVAEAYTEEIEKSVT 120

Query: 232 GNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEEL 291
           G+NWSTLD+L+ILYG L K K+L R W  ++   +VRSKSY+LA EAF R+  + RAEEL
Sbjct: 121 GDNWSTLDILMILYGRLGKEKELARTWNVIRGFHHVRSKSYLLATEAFARVGNLDRAEEL 180

Query: 292 WLEMQSVKQLKATE 305
           WLEM+  + LK TE
Sbjct: 181 WLEMKDERGLKETE 194


>gi|295828264|gb|ADG37801.1| AT1G07590-like protein [Capsella grandiflora]
          Length = 194

 Score =  264 bits (675), Expect = 6e-68,   Method: Compositional matrix adjust.
 Identities = 125/194 (64%), Positives = 153/194 (78%)

Query: 112 KLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHIL 171
           +L+L YMKKMR LGH  S+LV+NRLII NS+PGRRK I   L  MKADK  PHVST+HIL
Sbjct: 1   RLALGYMKKMRELGHRTSHLVYNRLIIRNSAPGRRKLIAKDLALMKADKAIPHVSTYHIL 60

Query: 172 MKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMT 231
           MK+EAN+HNI+G++K +  MK++ VEPNEVSYCI A AHAVARLYTVAE Y E +EKS+T
Sbjct: 61  MKLEANEHNIDGVLKAFDGMKKAGVEPNEVSYCIXAMAHAVARLYTVAEAYTEEIEKSVT 120

Query: 232 GNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEEL 291
           G+NWSTLD+L+ILYG L K K+L R W  ++   +VRSKSY+LA EAF R+  + RAEEL
Sbjct: 121 GDNWSTLDILMILYGRLGKEKELARTWNVIRGFHHVRSKSYLLATEAFARVGNLDRAEEL 180

Query: 292 WLEMQSVKQLKATE 305
           WLEM+  + LK TE
Sbjct: 181 WLEMKDXRGLKETE 194


>gi|295828266|gb|ADG37802.1| AT1G07590-like protein [Capsella grandiflora]
          Length = 194

 Score =  264 bits (674), Expect = 9e-68,   Method: Compositional matrix adjust.
 Identities = 125/194 (64%), Positives = 152/194 (78%)

Query: 112 KLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHIL 171
           +L+L YMKKMR LGH  S+LV+NRLII NS+PGRRK I   L  MKADK  PHVST+HIL
Sbjct: 1   RLALGYMKKMRELGHRTSHLVYNRLIIRNSAPGRRKLIAKDLALMKADKAIPHVSTYHIL 60

Query: 172 MKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMT 231
           MK+EAN HNI+G++K +  MK++ VEPNEVSYCI A AHAVARLYTVAE Y E +EKS+T
Sbjct: 61  MKLEANXHNIDGVLKAFDGMKKAGVEPNEVSYCIXAMAHAVARLYTVAEAYTEXIEKSVT 120

Query: 232 GNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEEL 291
           G+NWSTLD+L+ILYG L K K+L R W  ++   +VRSKSY+LA EAF R+  + RAEEL
Sbjct: 121 GDNWSTLDILMILYGRLGKEKELARTWNVIRGFHHVRSKSYLLATEAFARVGNLDRAEEL 180

Query: 292 WLEMQSVKQLKATE 305
           WLEM+  + LK TE
Sbjct: 181 WLEMKDXRGLKETE 194


>gi|295828262|gb|ADG37800.1| AT1G07590-like protein [Capsella grandiflora]
          Length = 194

 Score =  263 bits (673), Expect = 9e-68,   Method: Compositional matrix adjust.
 Identities = 125/194 (64%), Positives = 153/194 (78%)

Query: 112 KLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHIL 171
           +L+L YMKKMR LGH  S+LV+NRLII NS+PGRRK I   L  MKADK  PHVST+HIL
Sbjct: 1   RLALGYMKKMRELGHRTSHLVYNRLIIRNSAPGRRKLIAKDLALMKADKAIPHVSTYHIL 60

Query: 172 MKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMT 231
           MK+EAN+HNI+G++K +  MK++ VEPNEVSYCI A AHAVARLYTVAE Y E +EKS+T
Sbjct: 61  MKLEANEHNIDGVLKAFDGMKKAGVEPNEVSYCIXAMAHAVARLYTVAEAYTEEIEKSVT 120

Query: 232 GNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEEL 291
           G+NWSTLD+L+ILYG L K K+L R W  ++   +VRSKSY+LA EAF R+  + RAEEL
Sbjct: 121 GDNWSTLDILMILYGRLGKEKELARTWNVIRGFHHVRSKSYLLATEAFARVGNLDRAEEL 180

Query: 292 WLEMQSVKQLKATE 305
           WLEM+  + LK TE
Sbjct: 181 WLEMKDERGLKETE 194


>gi|295828270|gb|ADG37804.1| AT1G07590-like protein [Neslia paniculata]
          Length = 194

 Score =  260 bits (664), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 122/194 (62%), Positives = 153/194 (78%)

Query: 112 KLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHIL 171
           +L+L YMKKMR LG+  S+LV+NRLII NS+PGRRK I   L  MKADK  PHVST+HIL
Sbjct: 1   RLALGYMKKMRELGYRTSHLVYNRLIIRNSAPGRRKLIAKDLALMKADKATPHVSTYHIL 60

Query: 172 MKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMT 231
           MK+EAN+HNI+G++K +  MK++ VEPNEVSYCILA AHA+ARLYTVAE Y E +E+S+T
Sbjct: 61  MKLEANEHNIDGVLKAFDGMKKAGVEPNEVSYCILAMAHAIARLYTVAEAYTEEIERSIT 120

Query: 232 GNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEEL 291
           G+NWSTLD+L+ILY  L K K+L R W  ++   +VRSKSY+LA EAF R+  + RAEEL
Sbjct: 121 GDNWSTLDILMILYSRLGKEKELVRTWNVIRGFHHVRSKSYLLATEAFARVGNLDRAEEL 180

Query: 292 WLEMQSVKQLKATE 305
           W EM+ V+ LK TE
Sbjct: 181 WFEMKDVRGLKETE 194


>gi|168006155|ref|XP_001755775.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162693094|gb|EDQ79448.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 429

 Score =  229 bits (585), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 135/412 (32%), Positives = 229/412 (55%), Gaps = 4/412 (0%)

Query: 46  LEVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQGEKLFCCIPKDYQNELLYNNLVIAC 105
           +E+ +W+  E+  + +  D    ++   K    +  E+L    P +++ EL Y+ L+   
Sbjct: 1   MEISDWMALEKGTKWELADNIVRIDLKSKMKQFTVAEQLLENSPPEFKTELAYHTLLKNY 60

Query: 106 LDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHV 165
           +D  + + +   ++K++  G       FN++++L    G    +P IL  MKA  V   V
Sbjct: 61  VDHQMAQKAGALLEKLKSTGLLTLPFSFNQMMLLYKRKGMENKLPEILEDMKAHGVPKDV 120

Query: 166 STFHILMKIEANDHNIEGLMKVYSDMKRSE-VEPNEVSYCILATAHAVARLYTVAETYVE 224
            T++ILM +++   +IEG+ K++ ++K  E V+ +  ++  LATA   A L   A+ Y++
Sbjct: 121 YTYNILMDVKSRSGDIEGMEKIFEELKADENVKADAATFGTLATACVHAGLLEKAKVYLK 180

Query: 225 ALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQ 284
            +E+     N S  D+LI  YG +     +ER+W  V+  P V ++SY+  IEAFG++  
Sbjct: 181 EMEEGDIFRNRSAYDILISQYGAVGDVDGVERVWEKVKSGPIVSNRSYITVIEAFGKLGM 240

Query: 285 VSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRH 344
           V +AEEL+  M   K L  + Q+NS++S Y + G +DKA  L+ +M   G K NAITY H
Sbjct: 241 VEKAEELYEVMSQSKGLILSRQFNSLLSAYTRQGLMDKAEKLMDDMEKLGRKKNAITYHH 300

Query: 345 LALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLF 404
           L  G  K++ +++   A++    L+  K+ RS  PW ET +++++ FAE+G+V NAE  F
Sbjct: 301 LVTGYLKTDQLDKAVAAMKEA--LVDPKQGRSK-PWFETLVAVLDAFAERGNVVNAEQQF 357

Query: 405 EELKKANYTKYTFVYNTLIKAYVKAKINDPNLLRRMILGGARPDAETYSLLK 456
           +E+KKA       VYN L+KAY+ +++     L RM      P+ ET SLL+
Sbjct: 358 QEIKKAYPRLNIQVYNILLKAYINSRVPALGFLHRMSTDKLVPNDETLSLLR 409


>gi|168063926|ref|XP_001783918.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162664548|gb|EDQ51263.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 448

 Score =  220 bits (560), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 137/443 (30%), Positives = 243/443 (54%), Gaps = 4/443 (0%)

Query: 14  FQSWMREGFPVHRGEIFHSINRLRKLQLNKRALEVMEWVIRERPYRPKELDYSYLLEFTI 73
            + W+ EG+ + +  +   + RLR+ Q  K+A+E+ +W+  E+  + +  D    ++   
Sbjct: 9   IKEWLNEGYALDKRVLVSILIRLRRRQRYKQAMEISDWMSEEKNIKWEMADNIVRIDLKA 68

Query: 74  KNHGISQGEKLFCCIPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVF 133
           K    +  E+L    P +++ EL Y+ L+    D  + + +   ++K++  G       F
Sbjct: 69  KMKQFAVAEQLLEDSPPEFKTELAYHTLLRNYADYQMAQKADALLEKLKGTGILTLPFAF 128

Query: 134 NRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKR 193
           N++++L    G    +  IL  MK   V   V T++ILM ++A   +IEG+ K++ ++  
Sbjct: 129 NQMMLLYKRKGMMNKVTEILADMKTHGVPKDVYTYNILMDVKARSGDIEGMEKIFEELSA 188

Query: 194 SE-VEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGK 252
            E V+ +  ++  LAT    A L   A +Y++ +E+     N S  D+LI  YG +   +
Sbjct: 189 DENVKADAATFGTLATFCVHAGLLDKARSYLKEMEEGDVFRNRSAYDILISQYGAVGDQE 248

Query: 253 DLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVIS 312
            +ER+W  V+  P V ++SY+  IEAFG++  V +AEEL+  M   K L  + Q+NS++S
Sbjct: 249 GVERVWEKVKSGPVVSNRSYITVIEAFGKLGMVEKAEELYGIMSKSKGLILSRQFNSLLS 308

Query: 313 VYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTK 372
            Y + G ++KA  L+++M   G K NA+TY HL  G  K++ ++   KAL +  +     
Sbjct: 309 AYARQGLMEKAEKLVEDMVKLGRKKNAVTYHHLVTGYLKTDQLD---KALAVMKEAQGDS 365

Query: 373 KVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKIN 432
           K   S  W+ET +S+++ +AE+GDV +AE  F+++KKA       VYN L+KAY+K+++ 
Sbjct: 366 KQGRSRLWVETLISVLDAYAERGDVISAEKQFQDIKKAYPRPNIQVYNILLKAYIKSRVP 425

Query: 433 DPNLLRRMILGGARPDAETYSLL 455
               L+RM+     P+ ET +LL
Sbjct: 426 ALGFLQRMLADKLVPNEETLNLL 448


>gi|226530081|ref|NP_001147602.1| DNA-binding protein [Zea mays]
 gi|195612448|gb|ACG28054.1| DNA-binding protein [Zea mays]
          Length = 622

 Score =  199 bits (507), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 132/460 (28%), Positives = 236/460 (51%), Gaps = 10/460 (2%)

Query: 5   PRGEPVGSAFQSWMREGFPVHRGEIFHSINRLRKLQLNKRALEVMEWVIRERPYRPKELD 64
           PR + V SA + W ++G    RGE+++ +  LRK     +ALE++EWV + + +   E D
Sbjct: 165 PRHQ-VTSALEKWAKDGNAFDRGELYYVLLNLRKRHWYSKALELVEWVQKSQLFEFVERD 223

Query: 65  YSYLLEFTIKNHGISQGEKLFCCIPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMRVL 124
           Y+  L+ T K +G+ + E+    IP   + E++Y  L+  C+    IK S +   +M+ L
Sbjct: 224 YAAHLDLTAKVYGLHKAEQTIEKIPASCRGEIVYRTLLANCVSASNIKKSEQVFNRMKDL 283

Query: 125 GHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGL 184
           G  ++   FN+L++L     R+K I ++L  M+ + V P + T+ IL+  + +  +IE +
Sbjct: 284 GFPVTQFSFNQLLLLYKRLDRKK-IADVLAMMEKEDVKPSLFTYKILVDAKGSVGDIEAM 342

Query: 185 MKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIIL 244
            KV   M++  +EP+      +A  +        AE  ++A+E      N +    L+ L
Sbjct: 343 EKVIESMEKDSIEPDLTFNATIARHYIFYGQREKAEALLKAMEGDDIQKNRAACKTLLPL 402

Query: 245 YGYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKAT 304
           + +L     +ERIW   ++  N R    V AIEAFG++  V +AE+++ +M    +  ++
Sbjct: 403 HAFLGNSDAVERIWKACED--NTRVAESVSAIEAFGKLGDVEKAEKVFEDMLVHWKTLSS 460

Query: 305 EQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALEL 364
           + YN+++ VY  +  +DK   L K M  N  +  A T   L     ++  VE   KA  L
Sbjct: 461 KFYNALLKVYADHNLLDKGKELAKRMDENRVRFGAPTLDALVKLYVEAGEVE---KAESL 517

Query: 365 GMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIK 424
             KL     ++   P   T +++++ +++KGDV N+E +F +L+++ YT    +Y +L+ 
Sbjct: 518 VHKLSIQNHIK---PIYNTYMTLLDSYSKKGDVRNSEKVFNKLRQSGYTGRIRMYQSLLH 574

Query: 425 AYVKAKINDPNLLRRMILGGARPDAETYSLLKLAEQFQKK 464
           AYV AK        RM      P++   +L+   + F KK
Sbjct: 575 AYVHAKAPAYGFRERMKADNIFPNSAVSTLIAATDPFVKK 614


>gi|413946863|gb|AFW79512.1| DNA-binding protein [Zea mays]
          Length = 622

 Score =  199 bits (507), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 132/460 (28%), Positives = 236/460 (51%), Gaps = 10/460 (2%)

Query: 5   PRGEPVGSAFQSWMREGFPVHRGEIFHSINRLRKLQLNKRALEVMEWVIRERPYRPKELD 64
           PR + V SA + W ++G    RGE+++ +  LRK     +ALE++EWV + + +   E D
Sbjct: 165 PRHQ-VTSALEKWAKDGNAFDRGELYYVLLNLRKRHWYSKALELVEWVQKSQLFEFVERD 223

Query: 65  YSYLLEFTIKNHGISQGEKLFCCIPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMRVL 124
           Y+  L+ T K +G+ + E+    IP   + E++Y  L+  C+    IK S +   +M+ L
Sbjct: 224 YAAHLDLTAKVYGLHKAEQTIEKIPASCRGEIVYRTLLANCVSASNIKKSEQVFNRMKDL 283

Query: 125 GHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGL 184
           G  ++   FN+L++L     R+K I ++L  M+ + V P + T+ IL+  + +  +IE +
Sbjct: 284 GFPVTQFSFNQLLLLYKRLDRKK-IADVLAMMEKEDVKPSLFTYKILVDAKGSVGDIEAM 342

Query: 185 MKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIIL 244
            KV   M++  +EP+      +A  +        AE  ++A+E      N +    L+ L
Sbjct: 343 EKVIESMEKDSIEPDLTFNATIARHYIFYGQREKAEALLKAMEGDDIQKNRAACKTLLPL 402

Query: 245 YGYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKAT 304
           + +L     +ERIW   ++  N R    V AIEAFG++  V +AE+++ +M    +  ++
Sbjct: 403 HAFLGNSDAVERIWKACED--NTRVAESVSAIEAFGKLGDVEKAEKVFEDMLVHWKTLSS 460

Query: 305 EQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALEL 364
           + YN+++ VY  +  +DK   L K M  N  +  A T   L     ++  VE   KA  L
Sbjct: 461 KFYNALLKVYADHNLLDKGKELAKRMDENRVRFGAPTLDALVKLYVEAGEVE---KAESL 517

Query: 365 GMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIK 424
             KL     ++   P   T +++++ +++KGDV N+E +F +L+++ YT    +Y  L+ 
Sbjct: 518 VHKLSIQNHIK---PIYNTYMTLLDSYSKKGDVRNSEKVFNKLRQSGYTGRIRMYQVLLH 574

Query: 425 AYVKAKINDPNLLRRMILGGARPDAETYSLLKLAEQFQKK 464
           AYV+AK        RM      P++   +L+   + F KK
Sbjct: 575 AYVRAKAPAYGFRERMKADNIFPNSVVSTLIAATDPFVKK 614


>gi|6958202|gb|AAF32491.1|AF091837_1 DNA-binding protein [Triticum aestivum]
          Length = 612

 Score =  197 bits (502), Expect = 8e-48,   Method: Compositional matrix adjust.
 Identities = 128/455 (28%), Positives = 227/455 (49%), Gaps = 9/455 (1%)

Query: 10  VGSAFQSWMREGFPVHRGEIFHSINRLRKLQLNKRALEVMEWVIRERPYRPKELDYSYLL 69
           V    + W+  G    R +IF+ I  LRK +   +AL+++EW+   +     E DY+  L
Sbjct: 160 VSGTLKKWLDGGNTFDRSDIFYVIMNLRKRKFYFKALQLLEWLEDSKVIDLGERDYASRL 219

Query: 70  EFTIKNHGISQGEKLFCCIPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSIS 129
           +   K HG+ + EK    IP  ++ E++Y  L+  C+ +  +K S E   KM+ LG  ++
Sbjct: 220 DLVAKVHGVYKAEKYIDSIPISHRGEIVYRTLLANCVSEANVKKSEEVFNKMKDLGFPVT 279

Query: 130 YLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYS 189
               N+L++L     ++K I ++L +M+ + V P + T+ +L+  +    +I G+ KV  
Sbjct: 280 VFAINQLLLLYKRVDKKK-IADVLAKMEKENVKPSLFTYKLLVDTKGAIRDIAGMEKVVE 338

Query: 190 DMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLA 249
            M+   VEP+ +    +A  +  A     AE  +E++E      N +   +L+ LY +L 
Sbjct: 339 SMQAEGVEPDLLFQATIAKHYIFAGHREKAEAILESMEGGDIKGNRNACKILLPLYAFLG 398

Query: 250 KGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNS 309
           K  D+ER+W   +  P  R    + AIE+FGR+  V RAE+++ +M +  +  +++ YN+
Sbjct: 399 KKDDVERMWQVCEANP--RLDECLSAIESFGRLGDVERAEKVFEDMFATWKTLSSKFYNA 456

Query: 310 VISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLI 369
           ++ VY       K   L K M  +GC+    T   L      +  V+   KA  +  KL 
Sbjct: 457 LMKVYADQNLFKKGKELAKRMDEDGCRLGISTIDSLVKLYVGAGEVD---KAESILHKLS 513

Query: 370 TTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKA 429
            + K++   P   + L +++ +++KGD+ N+E +F++L++  Y      Y  L+ AYV A
Sbjct: 514 KSNKMK---PQYSSYLMLLDTYSKKGDIHNSEKVFDQLRQMGYNGRVRQYQLLLNAYVHA 570

Query: 430 KINDPNLLRRMILGGARPDAETYSLLKLAEQFQKK 464
           K        RM      P++   SLL   + F KK
Sbjct: 571 KTPVYGFRERMKADNIFPNSVIASLLAATDPFNKK 605


>gi|297739953|emb|CBI30135.3| unnamed protein product [Vitis vinifera]
          Length = 624

 Score =  194 bits (493), Expect = 8e-47,   Method: Compositional matrix adjust.
 Identities = 124/456 (27%), Positives = 227/456 (49%), Gaps = 9/456 (1%)

Query: 8   EPVGSAFQSWMREGFPVHRGEIFHSINRLRKLQLNKRALEVMEWVIRERPYRPKELDYSY 67
           +P+ S    W +EG  + R EI  ++  LRK+++  +AL+  EW+   +     E DY+ 
Sbjct: 170 QPIHSVLNKWDQEGKDMSRAEIAQTMLNLRKIRMFLKALQFSEWMEEHKKLDMVERDYAS 229

Query: 68  LLEFTIKNHGISQGEKLFCCIPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHS 127
            ++   K  G+ + E     IPK ++ EL+Y  L+  C+     K + E   KM+ LG  
Sbjct: 230 RVDLIAKVRGLQKAEHYIEKIPKSFRGELVYRTLLANCVSTTNAKKAEEVFNKMKDLGFP 289

Query: 128 ISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKV 187
           I+    N+L++L     ++K I ++L  M+ + V P + T+ +L+  +   ++I G+ ++
Sbjct: 290 ITTFACNQLLLLYKRVDKKK-IADVLLLMEKEDVKPSLFTYGLLIDTKGQSNDITGMEQI 348

Query: 188 YSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGY 247
              MK   +EPN     IL   +    L   AE  ++ +E      N     VL+  Y  
Sbjct: 349 VETMKAEGIEPNLQVQSILVRHYVFGGLKEKAEAILKEMEGGNLKENRWVCRVLLPPYAA 408

Query: 248 LAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQY 307
           L K  D+ERIW   +  P  R   +V AIEA+G++ +V  AE ++ +M    +  +++ Y
Sbjct: 409 LGKADDVERIWKVCESNP--RLPEFVAAIEAYGKLKKVEEAEAIFNKMSKTFKRLSSKHY 466

Query: 308 NSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMK 367
           ++++ VY  +  + K   L+K+MS +GC+   +T+  L     ++  VE+  K L+  M+
Sbjct: 467 SALLKVYADHKMLIKGKDLVKQMSDSGCRIGPLTWDALVKLYVEAGEVEKADKILQKAMQ 526

Query: 368 LITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYV 427
               K      P   T ++I++ +A++GD+ N+E +F +++++ Y      +  LI+AYV
Sbjct: 527 QSPIK------PMFSTYMAIMDQYAKRGDIHNSEKMFHQMRQSGYVSRLRQFQCLIQAYV 580

Query: 428 KAKINDPNLLRRMILGGARPDAETYSLLKLAEQFQK 463
            AK     +  RM      P+      L   + F+K
Sbjct: 581 NAKAPAYGIKERMKADNIFPNRVVAGQLAQVDAFRK 616


>gi|11138066|dbj|BAB17739.1| putative DNA-binding protein [Oryza sativa Japonica Group]
          Length = 591

 Score =  194 bits (492), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 131/460 (28%), Positives = 227/460 (49%), Gaps = 10/460 (2%)

Query: 5   PRGEPVGSAFQSWMREGFPVHRGEIFHSINRLRKLQLNKRALEVMEWVIRERPYRPKELD 64
           PR + V  A + W+ +G  + R E+F+ +  LRK +L  +AL+++E+V   + +   E D
Sbjct: 134 PRVD-VAGATKKWLNDGNTLERSELFYVLLSLRKRKLYTKALQLLEYVEESKLFDLGERD 192

Query: 65  YSYLLEFTIKNHGISQGEKLFCCIPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMRVL 124
           Y+  ++   K HGI + EK    +P  ++ E++Y  L+  C+    +K + +   KM+ L
Sbjct: 193 YASRVDLVAKVHGIYKAEKYIENVPASHRGEVVYRTLLANCVAIANVKKTEQVFNKMKDL 252

Query: 125 GHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGL 184
           G  ++    N+L++L     ++K + ++L  M+ + V P + T+ +L+  +    +IE +
Sbjct: 253 GFPVTVFSCNQLLLLYKRVDKKK-LGDVLTMMEKENVKPSLFTYKLLVDTKGAARDIEDM 311

Query: 185 MKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIIL 244
            KV   M+   +EP+ +    +A  +        AE  +E +E      N S    ++ L
Sbjct: 312 EKVIQAMQADGIEPDLLIQATIARHYIFGGYREKAEAILEQIEGDDINENRSACKFVLPL 371

Query: 245 YGYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKAT 304
           Y +L K  D+ERIW   +   N R    + AIEAFG++  V +AEE++  M    +  + 
Sbjct: 372 YAFLGKKADVERIWKVCE--VNARLDECMSAIEAFGKLGDVEKAEEIFENMFKTWKTLSF 429

Query: 305 EQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALEL 364
           E YN+++ VY      DK   L K M  +GC+    T   L      +  VE   KA  +
Sbjct: 430 EYYNAMLKVYANKKLFDKGKELAKRMGDDGCRLGPSTLDSLVKLYSDAGEVE---KADSI 486

Query: 365 GMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIK 424
             KL    K++   P   T L +++ +++KGDV NAE LF ++++  YT     Y  L++
Sbjct: 487 LHKLSYKNKIK---PLYTTYLMLLDSYSKKGDVHNAEKLFSKVRQMGYTGRIRQYQLLLE 543

Query: 425 AYVKAKINDPNLLRRMILGGARPDAETYSLLKLAEQFQKK 464
           AY+ AK        RM      P+    SLL   + F +K
Sbjct: 544 AYLNAKTPPYGFKERMKADDIFPNRAVASLLAATDPFNRK 583


>gi|225441211|ref|XP_002266581.1| PREDICTED: pentatricopeptide repeat-containing protein At1g80270,
           mitochondrial-like [Vitis vinifera]
          Length = 587

 Score =  194 bits (492), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 124/456 (27%), Positives = 227/456 (49%), Gaps = 9/456 (1%)

Query: 8   EPVGSAFQSWMREGFPVHRGEIFHSINRLRKLQLNKRALEVMEWVIRERPYRPKELDYSY 67
           +P+ S    W +EG  + R EI  ++  LRK+++  +AL+  EW+   +     E DY+ 
Sbjct: 133 QPIHSVLNKWDQEGKDMSRAEIAQTMLNLRKIRMFLKALQFSEWMEEHKKLDMVERDYAS 192

Query: 68  LLEFTIKNHGISQGEKLFCCIPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHS 127
            ++   K  G+ + E     IPK ++ EL+Y  L+  C+     K + E   KM+ LG  
Sbjct: 193 RVDLIAKVRGLQKAEHYIEKIPKSFRGELVYRTLLANCVSTTNAKKAEEVFNKMKDLGFP 252

Query: 128 ISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKV 187
           I+    N+L++L     ++K I ++L  M+ + V P + T+ +L+  +   ++I G+ ++
Sbjct: 253 ITTFACNQLLLLYKRVDKKK-IADVLLLMEKEDVKPSLFTYGLLIDTKGQSNDITGMEQI 311

Query: 188 YSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGY 247
              MK   +EPN     IL   +    L   AE  ++ +E      N     VL+  Y  
Sbjct: 312 VETMKAEGIEPNLQVQSILVRHYVFGGLKEKAEAILKEMEGGNLKENRWVCRVLLPPYAA 371

Query: 248 LAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQY 307
           L K  D+ERIW   +  P  R   +V AIEA+G++ +V  AE ++ +M    +  +++ Y
Sbjct: 372 LGKADDVERIWKVCESNP--RLPEFVAAIEAYGKLKKVEEAEAIFNKMSKTFKRLSSKHY 429

Query: 308 NSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMK 367
           ++++ VY  +  + K   L+K+MS +GC+   +T+  L     ++  VE+  K L+  M+
Sbjct: 430 SALLKVYADHKMLIKGKDLVKQMSDSGCRIGPLTWDALVKLYVEAGEVEKADKILQKAMQ 489

Query: 368 LITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYV 427
               K      P   T ++I++ +A++GD+ N+E +F +++++ Y      +  LI+AYV
Sbjct: 490 QSPIK------PMFSTYMAIMDQYAKRGDIHNSEKMFHQMRQSGYVSRLRQFQCLIQAYV 543

Query: 428 KAKINDPNLLRRMILGGARPDAETYSLLKLAEQFQK 463
            AK     +  RM      P+      L   + F+K
Sbjct: 544 NAKAPAYGIKERMKADNIFPNRVVAGQLAQVDAFRK 579


>gi|125525413|gb|EAY73527.1| hypothetical protein OsI_01409 [Oryza sativa Indica Group]
          Length = 611

 Score =  194 bits (492), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 131/460 (28%), Positives = 227/460 (49%), Gaps = 10/460 (2%)

Query: 5   PRGEPVGSAFQSWMREGFPVHRGEIFHSINRLRKLQLNKRALEVMEWVIRERPYRPKELD 64
           PR + V  A + W+ +G  + R E+F+ +  LRK +L  +AL+++E+V   + +   E D
Sbjct: 154 PRVD-VAGATKKWLNDGNTLERSELFYVLLSLRKRKLYTKALQLLEYVEESKLFDLGERD 212

Query: 65  YSYLLEFTIKNHGISQGEKLFCCIPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMRVL 124
           Y+  ++   K HGI + EK    +P  ++ E++Y  L+  C+    +K + +   KM+ L
Sbjct: 213 YASRVDLVAKVHGIYKAEKYIENVPASHRGEVVYRTLLANCVAIANVKKTEQVFNKMKDL 272

Query: 125 GHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGL 184
           G  ++    N+L++L     ++K + ++L  M+ + V P + T+ +L+  +    +IE +
Sbjct: 273 GFPVTVFSCNQLLLLYKRVDKKK-LGDVLTMMEKENVKPSLFTYKLLVDTKGATRDIEDM 331

Query: 185 MKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIIL 244
            KV   M+   +EP+ +    +A  +        AE  +E +E      N S    ++ L
Sbjct: 332 EKVIQAMQADGIEPDLLIQATIARHYIFGGYREKAEAILEQIEGDDINENRSACKFVLPL 391

Query: 245 YGYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKAT 304
           Y +L K  D+ERIW   +   N R    + AIEAFG++  V +AEE++  M    +  + 
Sbjct: 392 YAFLGKKADVERIWKVCE--VNARLDECMSAIEAFGKLGDVEKAEEIFENMFKTWKTLSF 449

Query: 305 EQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALEL 364
           E YN+++ VY      DK   L K M  +GC+    T   L      +  VE   KA  +
Sbjct: 450 EYYNAMLKVYANKKLFDKGKELAKRMGDDGCRLGPSTLDSLVKLYSDAGEVE---KADSI 506

Query: 365 GMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIK 424
             KL    K++   P   T L +++ +++KGDV NAE LF ++++  YT     Y  L++
Sbjct: 507 LHKLSYKNKIK---PLYTTYLMLLDSYSKKGDVHNAEKLFSKVRQMGYTGRIRQYQLLLE 563

Query: 425 AYVKAKINDPNLLRRMILGGARPDAETYSLLKLAEQFQKK 464
           AY+ AK        RM      P+    SLL   + F +K
Sbjct: 564 AYLNAKTPPYGFKERMKADDIFPNRAVASLLAATDPFNRK 603


>gi|56783681|dbj|BAD81093.1| putative DNA-binding protein [Oryza sativa Japonica Group]
 gi|56784204|dbj|BAD81589.1| putative DNA-binding protein [Oryza sativa Japonica Group]
 gi|125569936|gb|EAZ11451.1| hypothetical protein OsJ_01319 [Oryza sativa Japonica Group]
          Length = 611

 Score =  194 bits (492), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 131/460 (28%), Positives = 227/460 (49%), Gaps = 10/460 (2%)

Query: 5   PRGEPVGSAFQSWMREGFPVHRGEIFHSINRLRKLQLNKRALEVMEWVIRERPYRPKELD 64
           PR + V  A + W+ +G  + R E+F+ +  LRK +L  +AL+++E+V   + +   E D
Sbjct: 154 PRVD-VAGATKKWLNDGNTLERSELFYVLLSLRKRKLYTKALQLLEYVEESKLFDLGERD 212

Query: 65  YSYLLEFTIKNHGISQGEKLFCCIPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMRVL 124
           Y+  ++   K HGI + EK    +P  ++ E++Y  L+  C+    +K + +   KM+ L
Sbjct: 213 YASRVDLVAKVHGIYKAEKYIENVPASHRGEVVYRTLLANCVAIANVKKTEQVFNKMKDL 272

Query: 125 GHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGL 184
           G  ++    N+L++L     ++K + ++L  M+ + V P + T+ +L+  +    +IE +
Sbjct: 273 GFPVTVFSCNQLLLLYKRVDKKK-LGDVLTMMEKENVKPSLFTYKLLVDTKGAARDIEDM 331

Query: 185 MKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIIL 244
            KV   M+   +EP+ +    +A  +        AE  +E +E      N S    ++ L
Sbjct: 332 EKVIQAMQADGIEPDLLIQATIARHYIFGGYREKAEAILEQIEGDDINENRSACKFVLPL 391

Query: 245 YGYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKAT 304
           Y +L K  D+ERIW   +   N R    + AIEAFG++  V +AEE++  M    +  + 
Sbjct: 392 YAFLGKKADVERIWKVCE--VNARLDECMSAIEAFGKLGDVEKAEEIFENMFKTWKTLSF 449

Query: 305 EQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALEL 364
           E YN+++ VY      DK   L K M  +GC+    T   L      +  VE   KA  +
Sbjct: 450 EYYNAMLKVYANKKLFDKGKELAKRMGDDGCRLGPSTLDSLVKLYSDAGEVE---KADSI 506

Query: 365 GMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIK 424
             KL    K++   P   T L +++ +++KGDV NAE LF ++++  YT     Y  L++
Sbjct: 507 LHKLSYKNKIK---PLYTTYLMLLDSYSKKGDVHNAEKLFSKVRQMGYTGRIRQYQLLLE 563

Query: 425 AYVKAKINDPNLLRRMILGGARPDAETYSLLKLAEQFQKK 464
           AY+ AK        RM      P+    SLL   + F +K
Sbjct: 564 AYLNAKTPPYGFKERMKADDIFPNRAVASLLAATDPFNRK 603


>gi|357131430|ref|XP_003567340.1| PREDICTED: pentatricopeptide repeat-containing protein At1g80270,
           mitochondrial-like [Brachypodium distachyon]
          Length = 612

 Score =  193 bits (491), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 129/455 (28%), Positives = 224/455 (49%), Gaps = 10/455 (2%)

Query: 10  VGSAFQSWMREGFPVHRGEIFHSINRLRKLQLNKRALEVMEWVIRERPYRPKELDYSYLL 69
           V    + W+ +G  V R ++F ++  LR+ +   +AL+++EW+   +     E DY+  L
Sbjct: 160 VSGTLKKWVNDGNTVDRSDVFFAVLNLRRRRFFSKALQLLEWLEESKLIELVERDYASRL 219

Query: 70  EFTIKNHGISQGEKLFCCIPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSIS 129
           +   K HGI + EK    IP   + E++Y  L+  C+ +  +K + E   KM+ LG  ++
Sbjct: 220 DLMAKVHGIYKAEKFIDNIPASLRGEIVYRTLLANCVAEVNVKKAEEVFNKMKDLGFPVT 279

Query: 130 YLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYS 189
               N+L++L     ++K I ++L  M+ + V P + T+ +L+  +    +IEG+ KV  
Sbjct: 280 VFAINQLLLLYKRVDKKK-ISDVLTMMEKEDVKPSLFTYKLLVDTKGASRDIEGMEKVVQ 338

Query: 190 DMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLA 249
            M+   + P+ +    +A  +        AE  +E++E  M  N  +   +++ LY +L 
Sbjct: 339 SMEAEGITPDLLLQATIAKHYIFGGHREKAEAILESMEGDMKENR-NACKMVMPLYAFLG 397

Query: 250 KGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNS 309
           K  D+ERIW   Q   N R    + AIEAFGR+  V +AEE++  M    +  +++ YN+
Sbjct: 398 KKDDVERIWKVCQ--SNTRLDECLSAIEAFGRLGDVEKAEEVFGNMFKTWKTLSSKYYNA 455

Query: 310 VISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLI 369
           ++ VY     +DK   L K M  +GC+    T   L      +  VE   KA  L  KL 
Sbjct: 456 MMRVYANQNLMDKGKELAKRMEEDGCRLGISTLDSLVKLYVDAGEVE---KAESLLHKLS 512

Query: 370 TTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKA 429
              K++   P   + L +++ +++ GDV N+E +F +L++  Y      Y  L+ AY+ A
Sbjct: 513 VKNKMK---PQYSSYLMLLDSYSKIGDVHNSEKVFSKLRQMGYNGRIRQYQLLLHAYLHA 569

Query: 430 KINDPNLLRRMILGGARPDAETYSLLKLAEQFQKK 464
           K        RM      P++   SLL   + F KK
Sbjct: 570 KAPVYGFRERMKADNIFPNSVIASLLAATDPFNKK 604


>gi|148906608|gb|ABR16456.1| unknown [Picea sitchensis]
          Length = 600

 Score =  193 bits (491), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 123/434 (28%), Positives = 230/434 (52%), Gaps = 17/434 (3%)

Query: 12  SAFQSWMREGFPVHRGEIFHSINRLRKLQLNKRALEVMEWVIRERPYRPKELDYSYLLEF 71
           S+ + W+ +G  + R E+  +   LR  ++ KR L+V +W+  ++P++  E DY+  L+ 
Sbjct: 148 SSLEQWLADGNVLTRREVVITFVHLRNRRMFKRLLKVSDWLEGKKPFKKTERDYASRLDV 207

Query: 72  TIKNHGISQGEKLFCCIPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYL 131
             K  GI +GEK F  IP D + +  Y  L+        ++ + E  KKM+  G S++  
Sbjct: 208 ITKILGIFKGEKYFASIPSDMRGQRAYGTLLANYSSTCNVEKAEEIFKKMKAEGFSLTAF 267

Query: 132 VFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDM 191
            +N+L++L     ++K I ++L+ M+ + V P + T+ IL+ ++    +I G+ +V  +M
Sbjct: 268 EYNQLLLLYKRLDKKK-IQDVLKMMEDEGVKPTIFTYKILIDVKGWMGDIGGMEQVAENM 326

Query: 192 KRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKG 251
           K  ++E +  +  +LA  +  A L   AE  ++ LE     +  S L +L+ LY  L K 
Sbjct: 327 KSEDIEMDSGTLELLARHYIRAGLAEKAEVVLKELENVSLKDKRSRLKMLLPLYAELGKP 386

Query: 252 KDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVI 311
            ++ERIW   +  P +R   Y   + A+G++ Q+ +AE  + ++ +  +  + + YN+++
Sbjct: 387 TEVERIWKDFEAFPALRLDEYATGVVAWGKLGQIEKAEITFEKLLNSGKKLSAKHYNALL 446

Query: 312 SVYCKNGFIDKASGLLKEMSMNGC--KP---NAITYRHLALGCFKSNLVEEGFKALELGM 366
           +VY  +  + K   L+K MS NGC  +P   +A+   H+  G  +        KA  +  
Sbjct: 447 NVYADHHLLLKGKELVKRMSDNGCTIEPPIWDALIRLHVNAGELE--------KADSILF 498

Query: 367 KLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAY 426
           K    K++R   P   T ++I+E +AE+GDV NAE +F+ +++A YT     + +L+K+Y
Sbjct: 499 KACNQKQLR---PKYWTMVTILEKYAERGDVANAEKIFDRMRQAGYTGSAGAFASLLKSY 555

Query: 427 VKAKINDPNLLRRM 440
             A++       RM
Sbjct: 556 ANARVPAYGFRERM 569


>gi|125535921|gb|EAY82409.1| hypothetical protein OsI_37623 [Oryza sativa Indica Group]
          Length = 611

 Score =  189 bits (480), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 128/460 (27%), Positives = 225/460 (48%), Gaps = 10/460 (2%)

Query: 5   PRGEPVGSAFQSWMREGFPVHRGEIFHSINRLRKLQLNKRALEVMEWVIRERPYRPKELD 64
           PR + V  A + W+ +G  + R E+F+ +  LR+ +L  +AL+++E+V   +     E D
Sbjct: 154 PRVD-VAGALKKWLNDGNTLDRSELFYVLLSLRRRKLYIKALQLLEYVEESKLIDLGERD 212

Query: 65  YSYLLEFTIKNHGISQGEKLFCCIPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMRVL 124
           Y+  ++   K H I + EK    +P  ++ E++Y  L+  C+    +K + +   KM+ L
Sbjct: 213 YASRVDLVAKTHSIYKAEKYIENVPASHRGEIVYRTLLANCVAIANVKKAEQVFNKMKDL 272

Query: 125 GHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGL 184
           G  +S    N+L++L     ++K + ++L  M+ + V P + T+ +L+  +    +IE +
Sbjct: 273 GFPVSVFSCNQLLLLYKRVDKKK-LGDVLTMMEKENVKPSLFTYKLLVDTKGAARDIEDM 331

Query: 185 MKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIIL 244
            KV   M+   +EP+ +    +A  +        AE  +E +       N S    ++ L
Sbjct: 332 EKVIQAMQADGIEPDLLFQATIARHYIFGGYREKAEAILEQMVGDDINENRSACKFVLPL 391

Query: 245 YGYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKAT 304
           Y +L K  D+ERIW   +   N R    + AIEAFG++  V +AEE++  M    +  ++
Sbjct: 392 YAFLGKNDDVERIWKVCE--ANARLDECMSAIEAFGKLGDVEKAEEIFDNMFKTWKTLSS 449

Query: 305 EQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALEL 364
           + YN+++ VY      DK   L K M  +GC+    T   L      +  VE   KA  +
Sbjct: 450 KYYNAMLKVYANKKLFDKGKELAKRMGDDGCRLGPYTLDSLVKLYSDAGEVE---KADSI 506

Query: 365 GMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIK 424
             KL    K++   P   T L +++ +++KGDV NAE LF ++++  YT     Y  L++
Sbjct: 507 LHKLSYKNKIK---PMYTTYLMLLDSYSKKGDVHNAEKLFSKVRQMGYTGRIRQYQLLLE 563

Query: 425 AYVKAKINDPNLLRRMILGGARPDAETYSLLKLAEQFQKK 464
           AY+ AK        RM      P+    SLL   + F +K
Sbjct: 564 AYLNAKTPPYGFKERMKADDIFPNRAVASLLAATDPFNRK 603


>gi|115487560|ref|NP_001066267.1| Os12g0170100 [Oryza sativa Japonica Group]
 gi|77553759|gb|ABA96555.1| DNA-binding protein, putative, expressed [Oryza sativa Japonica
           Group]
 gi|113648774|dbj|BAF29286.1| Os12g0170100 [Oryza sativa Japonica Group]
 gi|125578643|gb|EAZ19789.1| hypothetical protein OsJ_35368 [Oryza sativa Japonica Group]
 gi|215767656|dbj|BAG99884.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 611

 Score =  187 bits (474), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 127/460 (27%), Positives = 225/460 (48%), Gaps = 10/460 (2%)

Query: 5   PRGEPVGSAFQSWMREGFPVHRGEIFHSINRLRKLQLNKRALEVMEWVIRERPYRPKELD 64
           PR + V  A + W+ +G  + R E+F+ +  LR+ +L  +AL+++E+V   +     E D
Sbjct: 154 PRVD-VAGALKKWLNDGNTLDRSELFYVLLILRRRKLYIKALQLLEYVEESKLIDLGERD 212

Query: 65  YSYLLEFTIKNHGISQGEKLFCCIPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMRVL 124
           Y+  ++   K H I + EK    +P  ++ E++Y  L+  C+    +K + +   KM+ L
Sbjct: 213 YASRVDLVAKTHSIYKAEKYIENVPASHRGEIVYRTLLANCVAIANVKKAEQVFNKMKDL 272

Query: 125 GHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGL 184
           G  +S    N+L++L     ++K + ++L  M+ + V P + T+ +L+  +    +IE +
Sbjct: 273 GFPVSVFSCNQLLLLYKRVDKKK-LGDVLTMMEKENVKPSLFTYKLLVDTKGAARDIEDM 331

Query: 185 MKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIIL 244
            KV   M+   +EP+ +    +A  +        +E  +E +       N S    ++ L
Sbjct: 332 EKVIQAMQADGIEPDLLFQATIARHYIFGGYREKSEAILEQMVGDDINENRSACKFVLPL 391

Query: 245 YGYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKAT 304
           Y +L K  D+ERIW   +   N R    + AIEAFG++  V +AEE++  M    +  ++
Sbjct: 392 YAFLGKNDDVERIWKVCE--ANARLDECMSAIEAFGKLGDVEKAEEIFDNMFKTWKTLSS 449

Query: 305 EQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALEL 364
           + YN+++ VY      DK   L K M  +GC+    T   L      +  VE   KA  +
Sbjct: 450 KYYNAMLKVYANKKLFDKGKELAKRMGDDGCRLGPYTLDSLVKLYSDAGEVE---KADSI 506

Query: 365 GMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIK 424
             KL    K++   P   T L +++ +++KGDV NAE LF ++++  YT     Y  L++
Sbjct: 507 LHKLSYKNKIK---PMYTTYLMLLDSYSKKGDVHNAEKLFSKVRQMGYTGRIRQYQLLLE 563

Query: 425 AYVKAKINDPNLLRRMILGGARPDAETYSLLKLAEQFQKK 464
           AY+ AK        RM      P+    SLL   + F +K
Sbjct: 564 AYLNAKTPPYGFKERMKADDIFPNRAVASLLAATDPFNRK 603


>gi|302801860|ref|XP_002982686.1| hypothetical protein SELMODRAFT_53462 [Selaginella moellendorffii]
 gi|300149785|gb|EFJ16439.1| hypothetical protein SELMODRAFT_53462 [Selaginella moellendorffii]
          Length = 463

 Score =  185 bits (470), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 130/458 (28%), Positives = 229/458 (50%), Gaps = 20/458 (4%)

Query: 6   RGEPVGSAFQSWMREGFPVHRGEIFHSINRLRKLQLNKRALEVMEWVIRERPYRPKELDY 65
           +G PV      W+ EG   H GEI  ++ RL+ L   K+A E+ +WVI+ER    ++  +
Sbjct: 18  KGGPVLHILHQWIAEGRESH-GEIIAAMKRLKWLGRFKQAYEISDWVIKERSLELQKFHF 76

Query: 66  SYLLEFTIKNHGISQGEK-LFCCIPKDYQNE-----LLYNNLVIACLDKGVIKLSLEYMK 119
              LE T +   ++  +  L   +P+ Y         ++ N VI  L     +L L+ MK
Sbjct: 77  INHLELTGRVVNMNAAKNFLLTKMPRVYAKSEAALITMFENYVIHSLLSKA-RLVLKLMK 135

Query: 120 KMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDH 179
           +  +L  + +   FN+L  L ++  +   IP ILR+M+  +++P+V T++IL+ I+A   
Sbjct: 136 EKNLLTTATA---FNKLFHLYANKKKEDGIPVILREMRDMRISPNVETYNILIGIKAKKG 192

Query: 180 NIEGLMKVYSDMK-RSEVEPNEVSYCILATAHAVARLYTVAETYV-EALEKSMTGNNWST 237
           + EG+ +++S MK   +  PN    C LA+ +  A  +  A  Y+ EA+       +   
Sbjct: 193 DTEGMERLFSKMKCDGDGTPNGEILCTLASGYVNAGDHEKAMAYLKEAVASDEFRESRRV 252

Query: 238 LDVLIILYGYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQS 297
            D +I LY  + +   ++RIW   +  P V + SYV  I A+ ++ ++ RAE+++ E+  
Sbjct: 253 HDKVIALYAAMGRADMIDRIWRFTRRFPVVSANSYVATIAAYEKVGRIDRAEKVFAELTE 312

Query: 298 VKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEE 357
            + L     Y  +   YC+ G + KA  LL+ +       N ++Y HL  G  KS     
Sbjct: 313 KRTLLRPAHYVPLFRAYCEGGEMGKAEKLLERIRHGNGHINNLSYHHLVAGYMKSG---- 368

Query: 358 GFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTF 417
                ++  + +T        P  +T + I++  A+  DV +AE LF+++++ +Y K   
Sbjct: 369 ---NPKMAAETLTRMFEERVPPCFDTVMLILKEHAKNADVNSAELLFQDMRRESYNKNVA 425

Query: 418 VYNTLIKAYVKAKINDPNLLRRMILGGARPDAETYSLL 455
            YN+L++AYV A  +    L+RM      P+A T+ LL
Sbjct: 426 AYNSLLEAYVNAGKHAYRFLQRMATDKVAPNARTFELL 463


>gi|414877074|tpg|DAA54205.1| TPA: hypothetical protein ZEAMMB73_351899 [Zea mays]
          Length = 613

 Score =  184 bits (466), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 124/460 (26%), Positives = 233/460 (50%), Gaps = 10/460 (2%)

Query: 5   PRGEPVGSAFQSWMREGFPVHRGEIFHSINRLRKLQLNKRALEVMEWVIRERPYRPKELD 64
           PR + V SA + W ++G  + RGE+++ +  LRK +   +ALE++E+V   +     E D
Sbjct: 156 PRHQ-VTSALEKWAKDGNALDRGELYYVLLNLRKRKWYHKALELVEYVQNSQLLELGERD 214

Query: 65  YSYLLEFTIKNHGISQGEKLFCCIPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMRVL 124
           Y+  ++ T K +G+ + E+    IP  +++E++Y  L+  C+ +G +K S +   +M+ L
Sbjct: 215 YAARVDLTAKVYGLHKAEQYIEKIPASHRSEVVYRTLLANCVAEGNVKKSEQVFNRMKDL 274

Query: 125 GHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGL 184
           G  ++    N+L++L     ++K I ++L  M+ + V P + T+ +L+  +    ++E +
Sbjct: 275 GFPVTTFSSNQLLLLYKRLDKKK-IADVLTMMEKEDVKPSIFTYKVLVDAKGMVGDVEAM 333

Query: 185 MKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIIL 244
            KV   M +  +EP+      +A  +        AET +E++E      N +    L+ L
Sbjct: 334 EKVVESMVKDGIEPDLTFNATIARQYIFNGQRDKAETLLESMEGDDIQKNRAACKFLLPL 393

Query: 245 YGYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKAT 304
           Y +L  G  +ERIW   ++  N R    + AI+AFG++  V +AE+++ +M    +  ++
Sbjct: 394 YAFLGNGDAVERIWKVCED--NTRIDECLSAIDAFGKLGNVEKAEKVFEDMFVKWKNLSS 451

Query: 305 EQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALEL 364
           + Y +++ VY     +DK   L K M   G K    T   L      +  VE   KA  L
Sbjct: 452 KYYTALLKVYANQNLLDKGEELAKRMDEEGAKFGTPTLNALVKLYADAGEVE---KAESL 508

Query: 365 GMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIK 424
             KL     V+   P   + +++++ +++KGDV N+E +F +L++  YT    +Y  L+ 
Sbjct: 509 LHKLSLKNNVK---PSYSSYMTLLDSYSKKGDVHNSEKVFNKLRQIGYTGRIRMYQFLLH 565

Query: 425 AYVKAKINDPNLLRRMILGGARPDAETYSLLKLAEQFQKK 464
           +Y+ AK        RM      P++   +L+   + F KK
Sbjct: 566 SYLHAKAPAYGFKERMKADNIFPNSAVATLIAATDPFVKK 605


>gi|297844450|ref|XP_002890106.1| DNA binding protein [Arabidopsis lyrata subsp. lyrata]
 gi|297335948|gb|EFH66365.1| DNA binding protein [Arabidopsis lyrata subsp. lyrata]
          Length = 594

 Score =  183 bits (465), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 122/457 (26%), Positives = 230/457 (50%), Gaps = 9/457 (1%)

Query: 7   GEPVGSAFQSWMREGFPVHRGEIFHSINRLRKLQLNKRALEVMEWVIRERPYRPKELDYS 66
           G  VGSA   W+ +G    R E   ++ +LRK ++  RAL++ EW+   + +  KE DY+
Sbjct: 139 GLSVGSALDKWVEQGKDTSRTEFASAMLQLRKRRMYGRALQMTEWLDDNKQFEMKERDYA 198

Query: 67  YLLEFTIKNHGISQGEKLFCCIPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGH 126
             L+   K  G+ +GE     IP+ ++ EL+Y  L+   +    ++ +     KM+ LG 
Sbjct: 199 SRLDLISKVRGLYKGEAYIETIPESFRGELVYRTLLSNYVATSNVRTAEAVFNKMKDLGF 258

Query: 127 SISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMK 186
            +S    N+++IL     ++K I ++L  M+ + + P+++T+ IL+  +   ++I G+ +
Sbjct: 259 PLSTFTCNQMLILYKRVDKKK-IADVLLLMEKENLKPNLNTYKILIDTKGLSNDITGMEQ 317

Query: 187 VYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYG 246
           +   MK   VEP+  +  ++A  +A A L   AE  ++ +E      N      L+ +YG
Sbjct: 318 IVETMKSEGVEPDLRARALIARNYASAGLKEKAEKVLKEMEGESLEENRHVYKDLLSVYG 377

Query: 247 YLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQ 306
           +L +  ++ RIW   +E P  R    + AI AFG+I +V  AE ++ +M  +    ++  
Sbjct: 378 FLQRADEVTRIWKICEEKP--RYNESLAAILAFGKIDKVKEAEAVFEKMLKMSHRVSSNV 435

Query: 307 YNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGM 366
           Y+ ++ VY  +  + +   L+K+M  +GC   A+T   +     ++  VE+   +L    
Sbjct: 436 YSVLLRVYVDHKMVSEGKDLVKQMLDSGCNIGALTLDAVIKLYLEAGEVEKAESSLS--- 492

Query: 367 KLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAY 426
           K I +K+++   P + + + ++  +  +GDV N E +F+ +K+  Y      Y  LI+AY
Sbjct: 493 KAIQSKQIK---PLMSSFMYVMGEYVRRGDVHNTEKIFQRMKQFGYQSRFRTYQALIQAY 549

Query: 427 VKAKINDPNLLRRMILGGARPDAETYSLLKLAEQFQK 463
           V AK     +  RM      P+    + L   + F+K
Sbjct: 550 VNAKAPAYGMKDRMKADNIFPNKGLAAQLTKTDPFKK 586


>gi|145335742|ref|NP_173001.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806396|sp|Q9XI21.2|PPR44_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g15480, mitochondrial; Flags: Precursor
 gi|332191207|gb|AEE29328.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 594

 Score =  183 bits (464), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 122/457 (26%), Positives = 236/457 (51%), Gaps = 9/457 (1%)

Query: 7   GEPVGSAFQSWMREGFPVHRGEIFHSINRLRKLQLNKRALEVMEWVIRERPYRPKELDYS 66
           G  VGSA   W+ +G   +R E   ++ +LRK ++  RAL++ EW+   + +  +E DY+
Sbjct: 139 GLSVGSALDKWVEQGKDTNRKEFESAMLQLRKRRMFGRALQMTEWLDENKQFEMEERDYA 198

Query: 67  YLLEFTIKNHGISQGEKLFCCIPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGH 126
             L+   K  G  +GE     IP+ ++ EL+Y  L+   +    ++ +     KM+ LG 
Sbjct: 199 CRLDLISKVRGWYKGEAYIKTIPESFRGELVYRTLLANHVATSNVRTAEAVFNKMKDLGF 258

Query: 127 SISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMK 186
            +S    N+++IL     ++K I ++L  ++ + + P+++T+ IL+  + + ++I G+ +
Sbjct: 259 PLSTFTCNQMLILYKRVDKKK-IADVLLLLEKENLKPNLNTYKILIDTKGSSNDITGMEQ 317

Query: 187 VYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYG 246
           +   MK   VE +  +  ++A  +A A L   AE  ++ +E      N      L+ +YG
Sbjct: 318 IVETMKSEGVELDLRARALIARHYASAGLKEKAEKVLKEMEGESLEENRHMCKDLLSVYG 377

Query: 247 YLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQ 306
           YL +  ++ R+W   +E P  R    + AI AFG+I +V  AE ++ ++  +    ++  
Sbjct: 378 YLQREDEVRRVWKICEENP--RYNEVLAAILAFGKIDKVKDAEAVFEKVLKMSHRVSSNV 435

Query: 307 YNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGM 366
           Y+ ++ VY  +  + +   L+K+MS +GC   A+T+  +     ++  VE+   +L    
Sbjct: 436 YSVLLRVYVDHKMVSEGKDLVKQMSDSGCNIGALTWDAVIKLYVEAGEVEKAESSLS--- 492

Query: 367 KLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAY 426
           K I +K+++   P + + + ++  +  +GDV N E +F+ +K+A Y    + Y TLI+AY
Sbjct: 493 KAIQSKQIK---PLMSSFMYLMHEYVRRGDVHNTEKIFQRMKQAGYQSRFWAYQTLIQAY 549

Query: 427 VKAKINDPNLLRRMILGGARPDAETYSLLKLAEQFQK 463
           V AK     +  RM      P+    + L  A+ F+K
Sbjct: 550 VNAKAPAYGMKERMKADNIFPNKRLAAQLAKADPFKK 586


>gi|5103846|gb|AAD39676.1|AC007591_41 F9L1.43 [Arabidopsis thaliana]
          Length = 623

 Score =  183 bits (464), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 122/457 (26%), Positives = 236/457 (51%), Gaps = 9/457 (1%)

Query: 7   GEPVGSAFQSWMREGFPVHRGEIFHSINRLRKLQLNKRALEVMEWVIRERPYRPKELDYS 66
           G  VGSA   W+ +G   +R E   ++ +LRK ++  RAL++ EW+   + +  +E DY+
Sbjct: 168 GLSVGSALDKWVEQGKDTNRKEFESAMLQLRKRRMFGRALQMTEWLDENKQFEMEERDYA 227

Query: 67  YLLEFTIKNHGISQGEKLFCCIPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGH 126
             L+   K  G  +GE     IP+ ++ EL+Y  L+   +    ++ +     KM+ LG 
Sbjct: 228 CRLDLISKVRGWYKGEAYIKTIPESFRGELVYRTLLANHVATSNVRTAEAVFNKMKDLGF 287

Query: 127 SISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMK 186
            +S    N+++IL     ++K I ++L  ++ + + P+++T+ IL+  + + ++I G+ +
Sbjct: 288 PLSTFTCNQMLILYKRVDKKK-IADVLLLLEKENLKPNLNTYKILIDTKGSSNDITGMEQ 346

Query: 187 VYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYG 246
           +   MK   VE +  +  ++A  +A A L   AE  ++ +E      N      L+ +YG
Sbjct: 347 IVETMKSEGVELDLRARALIARHYASAGLKEKAEKVLKEMEGESLEENRHMCKDLLSVYG 406

Query: 247 YLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQ 306
           YL +  ++ R+W   +E P  R    + AI AFG+I +V  AE ++ ++  +    ++  
Sbjct: 407 YLQREDEVRRVWKICEENP--RYNEVLAAILAFGKIDKVKDAEAVFEKVLKMSHRVSSNV 464

Query: 307 YNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGM 366
           Y+ ++ VY  +  + +   L+K+MS +GC   A+T+  +     ++  VE+   +L    
Sbjct: 465 YSVLLRVYVDHKMVSEGKDLVKQMSDSGCNIGALTWDAVIKLYVEAGEVEKAESSLS--- 521

Query: 367 KLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAY 426
           K I +K+++   P + + + ++  +  +GDV N E +F+ +K+A Y    + Y TLI+AY
Sbjct: 522 KAIQSKQIK---PLMSSFMYLMHEYVRRGDVHNTEKIFQRMKQAGYQSRFWAYQTLIQAY 578

Query: 427 VKAKINDPNLLRRMILGGARPDAETYSLLKLAEQFQK 463
           V AK     +  RM      P+    + L  A+ F+K
Sbjct: 579 VNAKAPAYGMKERMKADNIFPNKRLAAQLAKADPFKK 615


>gi|302798913|ref|XP_002981216.1| hypothetical protein SELMODRAFT_53460 [Selaginella moellendorffii]
 gi|300151270|gb|EFJ17917.1| hypothetical protein SELMODRAFT_53460 [Selaginella moellendorffii]
          Length = 463

 Score =  182 bits (461), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 129/458 (28%), Positives = 228/458 (49%), Gaps = 20/458 (4%)

Query: 6   RGEPVGSAFQSWMREGFPVHRGEIFHSINRLRKLQLNKRALEVMEWVIRERPYRPKELDY 65
           +G PV      W+ EG   H GEI  ++ RL+ L   K+A E+ +WVI+ER    ++  +
Sbjct: 18  KGGPVLHILHQWIAEGRESH-GEIIAAMKRLKWLGRFKQAYEISDWVIKERSLELQKFHF 76

Query: 66  SYLLEFTIKNHGISQGEK-LFCCIPKDYQNE-----LLYNNLVIACLDKGVIKLSLEYMK 119
              L+ T +   ++  +  L   +P+ Y         ++ N VI  L     +L L+ MK
Sbjct: 77  INHLDLTGRVVNMNAAKNFLLTKMPRVYAKSEAALITMFENYVIHSLLSKA-RLVLKLMK 135

Query: 120 KMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDH 179
           +  +L  + +   FN+L  L ++  +   IP ILR+M+  +++P+V T++IL+ I+A   
Sbjct: 136 EKNLLTTATA---FNKLFHLYANKKKEDGIPVILREMRDMRISPNVETYNILIGIKAKKG 192

Query: 180 NIEGLMKVYSDMK-RSEVEPNEVSYCILATAHAVARLYTVAETYV-EALEKSMTGNNWST 237
           + EG+ +++S MK   +  PN    C LA+ +  A  +  A  Y+ EA+       +   
Sbjct: 193 DTEGMERLFSKMKCDGDGTPNCEILCTLASGYVNAGDHEKAMAYLKEAVASEEFQESRRV 252

Query: 238 LDVLIILYGYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQS 297
            D +I LY  + +   ++RIW   +  P V + SYV  I A+ ++ ++ RAE+++ E+  
Sbjct: 253 HDKVIALYAAMGRADMIDRIWRFTRRFPVVSANSYVATIAAYEKVGRIDRAEKVFAELTE 312

Query: 298 VKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEE 357
            + L     Y  +   YC+ G + KA  LL+ +       N ++Y HL  G  KS   + 
Sbjct: 313 KRTLLRPAHYVPLFRAYCEGGEMGKAEKLLERIRHGNGHINNLSYHHLVAGYMKSGNPKM 372

Query: 358 GFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTF 417
             + L    +           P  +T + I++  A+  DV +AE LF+++++ +Y K   
Sbjct: 373 AAETLNRMFE-------ERVPPCFDTVMLILKEHAKNADVSSAELLFQDMRRESYNKNVA 425

Query: 418 VYNTLIKAYVKAKINDPNLLRRMILGGARPDAETYSLL 455
            YN+L++AYV A  +    L+RM      P+A T+ LL
Sbjct: 426 AYNSLLEAYVNAGKHAYRFLQRMATDKVAPNARTFELL 463


>gi|15220095|ref|NP_178143.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|42572199|ref|NP_974190.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|145327755|ref|NP_001077853.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75262222|sp|Q9C977.1|PP135_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g80270, mitochondrial; Flags: Precursor
 gi|12324975|gb|AAG52431.1|AC018848_2 hypothetical protein; 8785-10851 [Arabidopsis thaliana]
 gi|17064898|gb|AAL32603.1| Unknown protein [Arabidopsis thaliana]
 gi|20259918|gb|AAM13306.1| unknown protein [Arabidopsis thaliana]
 gi|332198258|gb|AEE36379.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332198259|gb|AEE36380.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332198260|gb|AEE36381.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 596

 Score =  181 bits (459), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 119/457 (26%), Positives = 234/457 (51%), Gaps = 9/457 (1%)

Query: 7   GEPVGSAFQSWMREGFPVHRGEIFHSINRLRKLQLNKRALEVMEWVIRERPYRPKELDYS 66
           G  +GSA   W+ EG  + R EI  ++ +LR+ ++  RAL++ EW+   +     E DY+
Sbjct: 141 GLSIGSALDKWVEEGNEITRVEIAKAMLQLRRRRMYGRALQMSEWLEANKKIEMTERDYA 200

Query: 67  YLLEFTIKNHGISQGEKLFCCIPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGH 126
             L+ T+K  G+ +GE     IPK ++ E+LY  L+  C+  G +K S     KM+ LG 
Sbjct: 201 SRLDLTVKIRGLEKGEACMQKIPKSFKGEVLYRTLLANCVAAGNVKKSELVFNKMKDLGF 260

Query: 127 SISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMK 186
            +S    +++++L+    R+K I ++L  M+ + + P + T+ IL+ ++   ++I G+ +
Sbjct: 261 PLSGFTCDQMLLLHKRIDRKK-IADVLLLMEKENIKPSLLTYKILIDVKGATNDISGMEQ 319

Query: 187 VYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYG 246
           +   MK   VE +  +  + A  ++ A L   AE  ++ +E      N      L+ +Y 
Sbjct: 320 ILETMKDEGVELDFQTQALTARHYSGAGLKDKAEKVLKEMEGESLEANRRAFKDLLSIYA 379

Query: 247 YLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQ 306
            L +  +++RIW   +  P    +  + AI+AFG++ +V  AE ++ ++  + +  ++  
Sbjct: 380 SLGREDEVKRIWKICESKPYF--EESLAAIQAFGKLNKVQEAEAIFEKIVKMDRRASSST 437

Query: 307 YNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGM 366
           Y+ ++ VY  +  + K   L+K M+ +GC+  A T+  L     ++  VE+    L+   
Sbjct: 438 YSVLLRVYVDHKMLSKGKDLVKRMAESGCRIEATTWDALIKLYVEAGEVEKADSLLDKAS 497

Query: 367 KLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAY 426
           K   TK + +S  +      I++ ++++GDV N E +F ++++A YT     +  L++AY
Sbjct: 498 KQSHTKLMMNSFMY------IMDEYSKRGDVHNTEKIFLKMREAGYTSRLRQFQALMQAY 551

Query: 427 VKAKINDPNLLRRMILGGARPDAETYSLLKLAEQFQK 463
           + AK     +  R+      P+    + L   + F+K
Sbjct: 552 INAKSPAYGMRDRLKADNIFPNKSMAAQLAQGDPFKK 588


>gi|297842839|ref|XP_002889301.1| hypothetical protein ARALYDRAFT_477224 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297335142|gb|EFH65560.1| hypothetical protein ARALYDRAFT_477224 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 597

 Score =  181 bits (458), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 118/457 (25%), Positives = 230/457 (50%), Gaps = 9/457 (1%)

Query: 7   GEPVGSAFQSWMREGFPVHRGEIFHSINRLRKLQLNKRALEVMEWVIRERPYRPKELDYS 66
           G  +GSA   W+ EG  + R E+  ++ +LR+ ++  RAL++ EW+   +     E DYS
Sbjct: 142 GLSIGSALDKWVEEGNEITRVEVAKAMLQLRRRRMYGRALQLSEWLEANKKIEMNERDYS 201

Query: 67  YLLEFTIKNHGISQGEKLFCCIPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGH 126
             L+ T+K  G+  GE     IPK ++ E++Y  L+  C+  G +K S     +M+ LG 
Sbjct: 202 SRLDLTVKIRGLENGEAYMQKIPKSFKGEVIYRTLLANCVAAGNVKKSELVFNRMKDLGF 261

Query: 127 SISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMK 186
            +S    +++++L     R+K I ++L  M+ + V P + T+ IL+ ++   ++I G+ +
Sbjct: 262 PLSGFTCDQMLLLYKRIDRKK-IADVLLLMEKENVKPSLLTYKILIDVKGATNDISGMEQ 320

Query: 187 VYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYG 246
           +   MK   V+P+  +  + A  ++ A L   AE  ++ +E      N      L+ +Y 
Sbjct: 321 ILETMKDEGVQPDFQTQALTAKHYSGAGLKEKAEKVLKEMEGESLEANRRAFKDLLSIYA 380

Query: 247 YLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQ 306
            L +  ++ RIW   +  P       + AI AFG++ +V  AE ++ ++ ++ +  ++  
Sbjct: 381 SLGREDEVTRIWKICESKPYF--DESLAAIHAFGKLNKVQEAEAIFEKIVTMGRRASSNT 438

Query: 307 YNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGM 366
           Y+ ++ VY  +  + K   L+K M+ +GC+  A T+  L     ++  VE+    L+   
Sbjct: 439 YSVLLRVYVDHKMLSKGKDLVKRMAESGCRIEATTWDALIKLYVEAGEVEKADSMLDKAS 498

Query: 367 KLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAY 426
           K   TK + +S  +      I++ ++++GDV N E +F ++++  YT     +  L++AY
Sbjct: 499 KQSHTKLMMNSFMY------IMDEYSKRGDVHNTEKIFLKMREVGYTSRLRQFQALLQAY 552

Query: 427 VKAKINDPNLLRRMILGGARPDAETYSLLKLAEQFQK 463
           + AK     +  RM      P+    + L   + F+K
Sbjct: 553 INAKAPAYGMRDRMKADNIFPNKSMAAQLAQGDPFKK 589


>gi|224089975|ref|XP_002308888.1| predicted protein [Populus trichocarpa]
 gi|222854864|gb|EEE92411.1| predicted protein [Populus trichocarpa]
          Length = 555

 Score =  180 bits (456), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 127/459 (27%), Positives = 228/459 (49%), Gaps = 19/459 (4%)

Query: 10  VGSAFQSWMREGFPVHRGEIFHSINRLRKLQLNKRALEVMEWVIRERPYRPKELDYSYLL 69
           V S    W+ EG  + R EI +++  LRK ++  RAL++ EW    +P    E DY+  L
Sbjct: 103 VQSVLDKWVAEGKDLDRLEISNAMINLRKRRMFGRALQLSEWFEANKPQEFVERDYASRL 162

Query: 70  EFTIKNHGISQGEKLFCCIPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSIS 129
           +   K  G+ + E     IPK ++ E++Y  L+  C+    +K + E   KMR L   I+
Sbjct: 163 DLIAKVRGLHKAEVYIDKIPKSFKGEVIYRTLLANCVVDHNVKKAEEVFNKMRDLEFPIT 222

Query: 130 YLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYS 189
               N+L++L     ++K I ++L  M+ + V P + T+ IL+  +   +++ G+ ++  
Sbjct: 223 PFACNQLLLLYKRLDKKK-IADVLLLMEKENVKPSLFTYKILIDTKGQSNDMTGMDQIVE 281

Query: 190 DMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNN-----WSTLDVLIIL 244
            MK   +EP+  +  I+A  +    L   A    EA+ K M G N     W+    ++ L
Sbjct: 282 TMKAEGIEPDIRTQAIMARHYVSGGLKEKA----EAILKEMEGGNLEEHRWACR-FMLPL 336

Query: 245 YGYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKAT 304
           YG L K  ++ R+W   ++ P  R    + AIEA+GR+ ++  AE ++  M    +  ++
Sbjct: 337 YGALGKADEVSRVWKFCEKSP--RLDECMAAIEAWGRLKKIDEAEAVFELMSKTWKKLSS 394

Query: 305 EQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALEL 364
             Y++++ VY  +  + K   L+K M  +GC+   +T+  L     ++  VE   KA  +
Sbjct: 395 RHYSTLLKVYANHKMLSKGKDLIKRMGDSGCRIGPLTWDALVKLYVEAGEVE---KADSI 451

Query: 365 GMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIK 424
             K +   K++   P   + L I+E +A KGD+ NAE +F  +++A Y      + TLI+
Sbjct: 452 LNKAVQQNKIK---PMYSSFLIIMERYATKGDIHNAEKMFHRMRQAGYQARIRQFQTLIQ 508

Query: 425 AYVKAKINDPNLLRRMILGGARPDAETYSLLKLAEQFQK 463
           AY+ AK     +  R+   G  P+    + L   + F++
Sbjct: 509 AYIIAKAPCYGMRERLKADGIFPNKSLAAQLAQVDAFRR 547


>gi|357439973|ref|XP_003590264.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355479312|gb|AES60515.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 557

 Score =  179 bits (455), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 126/457 (27%), Positives = 224/457 (49%), Gaps = 10/457 (2%)

Query: 7   GEPVGSAFQSWMREGFPVHRGEIFHSINRLRKLQLNKRALEVMEWVIRERPYRPKELDYS 66
           G  V SA   W+ +G  + R EI  ++N LR+ ++  RAL+ ++W+   +     E +Y+
Sbjct: 103 GLSVDSALDKWVEKGKELSRQEIGLALNSLRRRKMYGRALQALDWLESNKKLEFTEKEYA 162

Query: 67  YLLEFTIKNHGISQGEKLFCCIPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGH 126
             L+   K  G+ + EK    +P  ++ ELLY  L+  C     ++ + E   KMR LG 
Sbjct: 163 SKLDLIAKLRGLPKAEKYLEHVPNSFRGELLYRTLLANCASLENLRKTEETFNKMRELGF 222

Query: 127 SISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMK 186
            ++    N+L +L      +K I ++L  M+ + V P   T+ IL+ ++   ++I+G+ +
Sbjct: 223 PVTAFACNQL-LLIYKKIDKKKIADVLLMMEKENVKPSSYTYKILIDVKGLSNDIDGMSQ 281

Query: 187 VYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYG 246
           +   MK    E + ++   LA  +A A L    E  ++ +E      N      L+ LY 
Sbjct: 282 IVETMKAEGCELDHLTRASLARHYAAAGLTEKTEAILKEIEGENLKENMWVCPTLLRLYA 341

Query: 247 YLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQ 306
            L +  ++ERIW   +  P V  +  + AIEA+GR+ ++  AE ++ EM S K       
Sbjct: 342 ILGRADEVERIWKVCESKPRV--EDCLAAIEAWGRLKKIEEAEAVF-EMMSNKWKLTARN 398

Query: 307 YNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGM 366
           Y S++ +Y ++  ++K   L+K M  +GC     T+  L     ++  VE+    L+   
Sbjct: 399 YESLLKIYIRHKMLNKGKDLIKTMGDSGCTIGPTTWDALVSLYVQAGEVEKADTVLQ--- 455

Query: 367 KLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAY 426
           K +   K++   P   T ++I+E +A++GDV NAE +F  L++ANY      ++ L +AY
Sbjct: 456 KALQQNKMK---PMFTTFMTIMEQYAKRGDVHNAEKIFYRLRQANYISRISPFHALAQAY 512

Query: 427 VKAKINDPNLLRRMILGGARPDAETYSLLKLAEQFQK 463
             AK+    +  RM      P+      L   + F+K
Sbjct: 513 KNAKLPAYGIRERMKADNLFPNKALADQLVQVDPFRK 549


>gi|357119107|ref|XP_003561287.1| PREDICTED: pentatricopeptide repeat-containing protein At1g80270,
           mitochondrial-like [Brachypodium distachyon]
          Length = 576

 Score =  179 bits (454), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 118/448 (26%), Positives = 220/448 (49%), Gaps = 9/448 (2%)

Query: 10  VGSAFQSWMREGFPVHRGEIFHSINRLRKLQLNKRALEVMEWVIRERPYRPKELDYSYLL 69
           V S    W+ +G  + R E+   +  L+K +L  +A + MEW+ R      +E DY+  L
Sbjct: 124 VKSVLDKWIEDGNQLERNEVLLVLFHLKKQRLYWKAFQFMEWIERGHLLNFEERDYACHL 183

Query: 70  EFTIKNHGISQGEKLFCCIPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSIS 129
           +   +N GI    K    +PK ++NE+LY  L++ C+    I+ + E  +++R L   ++
Sbjct: 184 DLIARNTGIEDARKYIDRVPKPFRNEVLYETLLVNCVRARDIQKAEEVFREIRDLSLPLT 243

Query: 130 YLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYS 189
               N++I+L     R K + +I+  M+ + + P   T+ +++ ++   ++I G+    +
Sbjct: 244 VSACNQMILLYKRVARTK-VADIIMLMEKENIKPSPFTYKLIIDLKGRSNDISGVEVTLN 302

Query: 190 DMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLA 249
           +MK + VEP+ V+  ++A  +    L   A+  V  +E     +    +  L+ LY  L+
Sbjct: 303 EMKAAGVEPDFVTQTMVAKFYISGGLIEKAKAVVSEIEMEYMKDKRHAVRSLLHLYAALS 362

Query: 250 KGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNS 309
           K  ++ RIW    E P +    ++ AIEA+G++  + +AEE +  M    Q  +++ YN 
Sbjct: 363 KPDEVARIWKLCTE-PKL--DDFMAAIEAWGKLGCIEQAEETFEAMLEATQKLSSKYYNG 419

Query: 310 VISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLI 369
           +++VY +N  +DK    ++ MS +GC    +T+  L      S  V +    L+      
Sbjct: 420 MLNVYAENKLMDKGKKFVERMSFDGCPNGPLTWDALVKLYVNSGEVAKADSFLQ-----N 474

Query: 370 TTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKA 429
            T++     P   + + ++  +A+ GD+ NAE +F+ LK   Y      Y  L++AYV A
Sbjct: 475 ATEQNPDRRPTYGSYIYLLMAYAKMGDIYNAEKMFDRLKNIRYPGRKPPYPVLLEAYVNA 534

Query: 430 KINDPNLLRRMILGGARPDAETYSLLKL 457
           K+     + RM   G RP  +    LK 
Sbjct: 535 KVRPHGFIERMRADGVRPIKKVMEHLKF 562


>gi|357439923|ref|XP_003590239.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355479287|gb|AES60490.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 590

 Score =  179 bits (453), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 122/434 (28%), Positives = 217/434 (50%), Gaps = 10/434 (2%)

Query: 7   GEPVGSAFQSWMREGFPVHRGEIFHSINRLRKLQLNKRALEVMEWVIRERPYRPKELDYS 66
           G  V SA   W+ +G  + R EI  ++N LR+ ++  RAL+ ++W+   +     E +Y+
Sbjct: 152 GLSVDSALDKWVEKGKELSRQEIGLALNSLRRRKMYGRALQALDWLESNKKLEFTEKEYA 211

Query: 67  YLLEFTIKNHGISQGEKLFCCIPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGH 126
             L+   K  G+ + EK    +P  ++ ELLY  L+  C     ++ + E   KMR LG 
Sbjct: 212 SKLDLIAKLRGLPKAEKYLEHVPNSFRGELLYRTLLANCASLENLRKTEETFNKMRELGF 271

Query: 127 SISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMK 186
            ++    N+L +L      +K I ++L  M+ + V P   T+ IL+ ++   ++I+G+ +
Sbjct: 272 PVTAFACNQL-LLIYKKIDKKKIADVLLMMEKENVKPSSYTYKILIDVKGLSNDIDGMSQ 330

Query: 187 VYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYG 246
           +   MK    E + ++   LA  +A A L    E  ++ +E      N      L+ LY 
Sbjct: 331 IVETMKAEGCELDHLTRASLARHYAAAGLTEKTEAILKEIEGENLKENMWVCPTLLRLYA 390

Query: 247 YLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQ 306
            L +  ++ERIW   +  P V  +  + AIEA+GR+ ++  AE ++ EM S K       
Sbjct: 391 ILGRADEVERIWKVCESKPRV--EDCLAAIEAWGRLKKIEEAEAVF-EMMSNKWKLTARN 447

Query: 307 YNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGM 366
           Y S++ +Y ++  ++K   L+K M  +GC     T+  L     ++  VE+    L+   
Sbjct: 448 YESLLKIYIRHKMLNKGKDLIKTMGDSGCTIGPTTWDALVSLYVQAGEVEKADTVLQ--- 504

Query: 367 KLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAY 426
           K +   K++   P   T ++I+E +A++GDV NAE +F  L++ANY      ++ L +AY
Sbjct: 505 KALQQNKMK---PMFTTFMTIMEQYAKRGDVHNAEKIFYRLRQANYISRISPFHALAQAY 561

Query: 427 VKAKINDPNLLRRM 440
             AK+    +  RM
Sbjct: 562 KNAKLPAYGIRERM 575


>gi|224137686|ref|XP_002322619.1| predicted protein [Populus trichocarpa]
 gi|222867249|gb|EEF04380.1| predicted protein [Populus trichocarpa]
          Length = 472

 Score =  176 bits (445), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 116/425 (27%), Positives = 222/425 (52%), Gaps = 11/425 (2%)

Query: 7   GEPVGSAFQSWMREGFPVHRGEIFHSINRLRKLQLNKRALEVMEWVIRERPYRPKELDYS 66
           G  V S    W+ EG  + + EI +++  LRK +L  RAL++ EWV   +     E DY+
Sbjct: 17  GVSVHSVLDKWVAEGRDLDQLEISNAMFNLRKRRLFGRALQLSEWVEANKRKDFDERDYA 76

Query: 67  YLLEFTIKNHGISQGEKLFCCIPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGH 126
             L+   K  G+ + E     IPK  + E++Y  L+  C+     K ++E   KM+ L  
Sbjct: 77  SRLDLIAKVRGLQKAEVYIEKIPKSLKGEVIYRTLLANCVSANNAKKAVEVFNKMKDLEL 136

Query: 127 SISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMK 186
            I+   +N+L++L     ++K I ++L  M+ + V P + T+ +L+  +   ++I G+ +
Sbjct: 137 PITLFSYNQLLLLYKRHDKKK-IADVLLSMEKENVKPSLFTYILLIDTKGQSNDIAGMEQ 195

Query: 187 VYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALE-KSMTGNNWSTLDVLIILY 245
           +   MK   +EP+  +  I+A  +    L   AE  ++ +E  ++  + W+    ++ LY
Sbjct: 196 IAETMKAEGIEPDIKTQAIMARHYVSGGLKEKAEIVLKEMEGGNLEEHRWAC-QFMLPLY 254

Query: 246 GYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATE 305
           G L K  ++ R+W   ++ P  R    + AIEA+G++ ++  AE ++  M    +  +++
Sbjct: 255 GTLGKADEVSRLWKFCKKSP--RLDECMAAIEAWGQLKKIPEAEAVFELMSKTWKKLSSK 312

Query: 306 QYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELG 365
            Y++++ VY  N  + K   L+K+M  +GC+   +T+  L     ++  VE   KA  + 
Sbjct: 313 HYSALLKVYANNKMLSKGKDLIKQMGDSGCRIGPLTWDALIKLYVEAGEVE---KADSIL 369

Query: 366 MKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKA 425
            K +   +++   P   + + I+E +A+KGD+ NAE +F  +++A Y   +  + TLI+A
Sbjct: 370 NKAVQQNQMK---PMFSSYMIIMEKYAKKGDIHNAEKMFHRMRQAGYQARSKQFQTLIQA 426

Query: 426 YVKAK 430
           Y+ AK
Sbjct: 427 YINAK 431


>gi|356534606|ref|XP_003535844.1| PREDICTED: pentatricopeptide repeat-containing protein At1g80270,
           mitochondrial-like [Glycine max]
          Length = 600

 Score =  175 bits (443), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 126/458 (27%), Positives = 231/458 (50%), Gaps = 12/458 (2%)

Query: 7   GEPVGSAFQSWMREGFPVHRGEIFHSINRLRKLQLNKRALEVMEWVIRERPYRPKELDYS 66
           G  V SA   W  +G  + R EIF ++  LR+ ++  RA ++ +W+   +     E DY+
Sbjct: 146 GLSVDSALSKWAGQGKELSRKEIFLAVRELRRRKMYGRAFQLFQWLESNKKLEFMESDYA 205

Query: 67  YLLEFTIKNHGISQGEKLFCCIPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGH 126
             L+   K  G+ Q EK    +P+ ++ ELLY  L+  C  +  +  S +   KM+ L  
Sbjct: 206 SQLDLIAKLRGLPQAEKYIESVPESFRGELLYRTLLANCASQNNLIASEKIFNKMKDLDL 265

Query: 127 SISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMK 186
            ++    N+L++L      +K I ++L  M+ + V P + T+ IL+  + + ++I G+ +
Sbjct: 266 PLTVFACNQLLLLYKKL-DKKKIADVLLLMEKENVKPSLFTYRILIDSKGHSNDIAGMEQ 324

Query: 187 VYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALE-KSMTGNNWSTLDVLIILY 245
           V+  MK    EP+     +LA  +  A L   AE  ++ +E +++    W     L+ LY
Sbjct: 325 VFETMKEEGFEPDIQLQALLARHYTSAGLKEKAEAILKEIEGENLEEKQW-VCATLLRLY 383

Query: 246 GYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATE 305
             L K  ++ERIW   +  P V     + A+EA+G++ ++  AE ++ EM S K    ++
Sbjct: 384 ANLGKADEVERIWKVCESKPRV--DDCLAAVEAWGKLEKIEEAEAVF-EMASKKWKLNSK 440

Query: 306 QYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELG 365
            Y+ ++ +Y  N  + K   L+K M+ +G +   +T+  L     ++  VE+    L+  
Sbjct: 441 NYSILLKIYANNKMLAKGKDLIKRMADSGLRIGPLTWNALVKLYIQAGEVEKADSVLQ-- 498

Query: 366 MKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKA 425
            K I   +++   P   T L I+E +A++GDV N+E +F ++++A YT     +  L++A
Sbjct: 499 -KAIQQSQLQ---PMFTTYLDILEQYAKRGDVHNSEKIFLKMRQAGYTSRISQFKVLMQA 554

Query: 426 YVKAKINDPNLLRRMILGGARPDAETYSLLKLAEQFQK 463
           YV AK+    +  RM      P+    + L L + F+K
Sbjct: 555 YVNAKVPAYGIRERMKADNLFPNKTLANQLFLVDAFRK 592


>gi|297596551|ref|NP_001042753.2| Os01g0280400 [Oryza sativa Japonica Group]
 gi|255673117|dbj|BAF04667.2| Os01g0280400, partial [Oryza sativa Japonica Group]
          Length = 426

 Score =  170 bits (430), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 117/419 (27%), Positives = 203/419 (48%), Gaps = 9/419 (2%)

Query: 46  LEVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQGEKLFCCIPKDYQNELLYNNLVIAC 105
           L+++E+V   + +   E DY+  ++   K HGI + EK    +P  ++ E++Y  L+  C
Sbjct: 9   LQLLEYVEESKLFDLGERDYASRVDLVAKVHGIYKAEKYIENVPASHRGEVVYRTLLANC 68

Query: 106 LDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHV 165
           +    +K + +   KM+ LG  ++    N+L++L     ++K + ++L  M+ + V P +
Sbjct: 69  VAIANVKKTEQVFNKMKDLGFPVTVFSCNQLLLLYKRVDKKK-LGDVLTMMEKENVKPSL 127

Query: 166 STFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEA 225
            T+ +L+  +    +IE + KV   M+   +EP+ +    +A  +        AE  +E 
Sbjct: 128 FTYKLLVDTKGAARDIEDMEKVIQAMQADGIEPDLLIQATIARHYIFGGYREKAEAILEQ 187

Query: 226 LEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQV 285
           +E      N S    ++ LY +L K  D+ERIW   +   N R    + AIEAFG++  V
Sbjct: 188 IEGDDINENRSACKFVLPLYAFLGKKADVERIWKVCE--VNARLDECMSAIEAFGKLGDV 245

Query: 286 SRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHL 345
            +AEE++  M    +  + E YN+++ VY      DK   L K M  +GC+    T   L
Sbjct: 246 EKAEEIFENMFKTWKTLSFEYYNAMLKVYANKKLFDKGKELAKRMGDDGCRLGPSTLDSL 305

Query: 346 ALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFE 405
                 +  VE   KA  +  KL    K++   P   T L +++ +++KGDV NAE LF 
Sbjct: 306 VKLYSDAGEVE---KADSILHKLSYKNKIK---PLYTTYLMLLDSYSKKGDVHNAEKLFS 359

Query: 406 ELKKANYTKYTFVYNTLIKAYVKAKINDPNLLRRMILGGARPDAETYSLLKLAEQFQKK 464
           ++++  YT     Y  L++AY+ AK        RM      P+    SLL   + F +K
Sbjct: 360 KVRQMGYTGRIRQYQLLLEAYLNAKTPPYGFKERMKADDIFPNRAVASLLAATDPFNRK 418


>gi|356498381|ref|XP_003518031.1| PREDICTED: pentatricopeptide repeat-containing protein At1g80270,
           mitochondrial-like [Glycine max]
          Length = 609

 Score =  169 bits (428), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 124/458 (27%), Positives = 232/458 (50%), Gaps = 12/458 (2%)

Query: 7   GEPVGSAFQSWMREGFPVHRGEIFHSINRLRKLQLNKRALEVMEWVIRERPYRPKELDYS 66
           G  V SA   W+  G  + R EI  ++  LR+ ++  RA ++ +W+   +     E DY+
Sbjct: 155 GLSVDSALNKWVEHGKELSRKEILLAVRELRRRKMYGRAFQLFQWLESNKKLEFMESDYA 214

Query: 67  YLLEFTIKNHGISQGEKLFCCIPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGH 126
             L+   K  G+ + EK    +P+ ++ ELLY  L+  C  +  +  + +   KM+ L  
Sbjct: 215 SQLDLIAKLRGLPKAEKYIESVPESFRGELLYRTLLANCASQNNLIATEKIFNKMKDLDL 274

Query: 127 SISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMK 186
            ++    N+L++L      +K I ++L  M+ + V P + T+ IL+  +   ++I G+ +
Sbjct: 275 PLTAFACNQLLLLYKKL-DKKKIADVLLLMEKENVKPSLFTYRILIDSKGQSNDIAGMEQ 333

Query: 187 VYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALE-KSMTGNNWSTLDVLIILY 245
           V+  MK    EP+     +LA  +  + L   AE  ++ +E +++  N W     L+ LY
Sbjct: 334 VFETMKEEGFEPDIQIQALLARHYTSSGLKEKAEAMLKEMEGENLKENQW-VCATLLRLY 392

Query: 246 GYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATE 305
             L K  ++ERIW   +  P V  +  + A+EA+G++ ++  AE ++ EM S K    ++
Sbjct: 393 ANLGKADEVERIWKVCESKPRV--EDCLAAVEAWGKLNKIEEAEAVF-EMVSKKWKLNSK 449

Query: 306 QYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELG 365
            Y+ ++ +Y  N  + K   L+K M+ +G +   +T+  L     ++  VE   KA  + 
Sbjct: 450 NYSVLLKIYANNKMLTKGKELVKLMADSGVRIGPLTWDALVKLYIQAGEVE---KADSIL 506

Query: 366 MKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKA 425
            K I   +++   P   T L+I+E +A++GDV N+E +F ++++A YT     +  LI+A
Sbjct: 507 HKAIQQNQLQ---PMFTTYLAILEQYAKRGDVHNSEKIFLKMRQAGYTSRISQFQVLIQA 563

Query: 426 YVKAKINDPNLLRRMILGGARPDAETYSLLKLAEQFQK 463
           YV AK+    +  R+      P+    + L L + F+K
Sbjct: 564 YVNAKVPAYGIRERIKADNLFPNKTLANQLALVDAFRK 601


>gi|125599572|gb|EAZ39148.1| hypothetical protein OsJ_23575 [Oryza sativa Japonica Group]
          Length = 610

 Score =  167 bits (423), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 109/438 (24%), Positives = 221/438 (50%), Gaps = 15/438 (3%)

Query: 14  FQSWMREGFPVHRGEIFHSINRLRKLQLNKRALEVMEWVIRERPYRPKELDYSYLLEFTI 73
              W+ +G  + R +    +  L+K  + ++AL+ +EW+ R +    ++ DY+  L+   
Sbjct: 164 LDKWIEDGNQLERNDAMLVLFHLKKQHMYRKALQFVEWMERGKLLNFEKRDYACHLDLIA 223

Query: 74  KNHGISQGEKLFCCIPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVF 133
           ++HGI   +K    +P  ++NE+LY  L++ C+  G I+ + E  K+++ L   ++  + 
Sbjct: 224 RSHGIETAQKYIKRVPLPFRNEVLYETLIVNCVLAGDIQKAEEVFKEIKDLCLRLTVTLC 283

Query: 134 NRLIILNS--SPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDM 191
           N++I+L    +PG+   + ++L  M+ + V P   T+ +L+ ++   +++ G+  V ++M
Sbjct: 284 NQMILLYKRIAPGK---VASVLMLMEKENVKPSAFTYRLLIDLKGRSNDLAGIEVVLNEM 340

Query: 192 KRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTG--NNWSTLDVLIILYGYLA 249
           K   +EP+  +  ++A  +    L   AE  V+ +E  ++   +    +  L+ LY  L 
Sbjct: 341 KAYGIEPSTSTQTMVARFYIHGGLTEKAEAVVKEMEAQLSNSKDGRHVIKSLLHLYAALN 400

Query: 250 KGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNS 309
           K  D+ RIW    E P +  + ++ AI+A+G +  + +AEE +  M +  +  +++ YN+
Sbjct: 401 KPNDVARIWEMCTE-PML--EDFLSAIKAWGELGLIEKAEETFEAMANAPEKLSSKYYNA 457

Query: 310 VISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLI 369
           +++VY +N  + K    ++ M  +GC    +T+  L      S  VE+    L     L 
Sbjct: 458 MLNVYAQNKLLSKGKQFVERMCRDGCPNGPLTWDALINLYVNSGEVEKADSFL-----LN 512

Query: 370 TTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKA 429
             ++     P   +   +++ +A++GD+ N E +F+ LK   Y      Y  L++AYV A
Sbjct: 513 VAEENPDRKPLFTSYFFLMKGYAKRGDIHNTEKIFDRLKNVGYAPRPLHYAVLLEAYVNA 572

Query: 430 KINDPNLLRRMILGGARP 447
           K+     L RM     RP
Sbjct: 573 KVPAHGFLERMRGDNVRP 590


>gi|242043362|ref|XP_002459552.1| hypothetical protein SORBIDRAFT_02g006520 [Sorghum bicolor]
 gi|241922929|gb|EER96073.1| hypothetical protein SORBIDRAFT_02g006520 [Sorghum bicolor]
          Length = 421

 Score =  167 bits (423), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 108/412 (26%), Positives = 208/412 (50%), Gaps = 14/412 (3%)

Query: 29  IFHSINRLRKLQLNKRALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQGEKLFCCI 88
           +FH    LRK ++  +AL+ MEW+ R +    +E DY+  L+   +NHGI   EK    +
Sbjct: 3   LFH----LRKQRMYNKALKFMEWIDRRKLLNFEERDYASHLDLVARNHGIEAAEKYIERV 58

Query: 89  PKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKT 148
           P+ +++E+LY  L++ C+ +   + + +   ++R L   ++    N++++L     R K 
Sbjct: 59  PEAFRSEVLYETLLVNCVCRDDAQKAEQVFNEIRELSLPLTVSACNQMLLLYKRVSRNKV 118

Query: 149 IPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILAT 208
           + +IL+ M+ + + P + T+ +++ ++   ++  G+  V + MK +  EP+     ++A 
Sbjct: 119 V-DILKLMENENIKPSLFTYKLMIDLKGRSNDTLGMESVLNLMKENGFEPDFGIQTMVAK 177

Query: 209 AHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVR 268
            +    L   AE    A+E  +  N    +  L+ LY  L +  D+ERIW    E P + 
Sbjct: 178 FYISGDLAEKAEEVTNAMEVYVNANR-HAIRSLLDLYAILGRPDDVERIWNLCTE-PKL- 234

Query: 269 SKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLK 328
            + ++ AI+A+G++  + RAEE +  +        ++ +N+++ VY +N  +DK    ++
Sbjct: 235 -EDFLAAIKAWGKLGHIERAEETFDALVKTSPKLTSKYFNAMLYVYAENELLDKGKKFIE 293

Query: 329 EMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSII 388
            MS++GC  + +T+  +         V  G  A         T+      P   + + ++
Sbjct: 294 RMSLDGCPSSPLTWDAVV-----KLYVNSGELAKADSFLANVTEDNPDRYPLFRSYVILL 348

Query: 389 EIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKINDPNLLRRM 440
           + FAEKGD+ NAE +F  LK+ +Y   T  YN L+ AY  A++       RM
Sbjct: 349 KAFAEKGDIHNAEKIFNRLKQTSYPARTLPYNLLLAAYANAQVTPYGFRERM 400


>gi|125557709|gb|EAZ03245.1| hypothetical protein OsI_25393 [Oryza sativa Indica Group]
          Length = 610

 Score =  167 bits (422), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 109/438 (24%), Positives = 221/438 (50%), Gaps = 15/438 (3%)

Query: 14  FQSWMREGFPVHRGEIFHSINRLRKLQLNKRALEVMEWVIRERPYRPKELDYSYLLEFTI 73
              W+ +G  + R +    +  L+K  + ++AL+ +EW+ R +    ++ DY+  L+   
Sbjct: 164 LDKWIEDGNQLERNDAMLVLFHLKKQHMYRKALQFVEWMERGKLLNFEKRDYACHLDLIA 223

Query: 74  KNHGISQGEKLFCCIPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVF 133
           ++HGI   +K    +P  ++NE+LY  L++ C+  G I+ + E  K+++ L   ++  + 
Sbjct: 224 RSHGIETAQKYIKRVPLPFRNEVLYETLIVNCVLAGDIQKAEEVFKEIKDLCLRLTVTLC 283

Query: 134 NRLIILNS--SPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDM 191
           N++I+L    +PG+   + ++L  M+ + V P   T+ +L+ ++   +++ G+  V ++M
Sbjct: 284 NQMILLYKRIAPGK---VASVLMLMEKENVKPSAFTYRLLIDLKGRSNDLAGIEVVINEM 340

Query: 192 KRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTG--NNWSTLDVLIILYGYLA 249
           K   +EP+  +  ++A  +    L   AE  V+ +E  ++   +    +  L+ LY  L 
Sbjct: 341 KAYGIEPSTSTQTMVARFYIHGGLTEKAEAVVKEMEAQLSNSKDGRHVIKSLLHLYAALN 400

Query: 250 KGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNS 309
           K  D+ RIW    E P +  + ++ AI+A+G +  + +AEE +  M +  +  +++ YN+
Sbjct: 401 KPNDVARIWEMCTE-PML--EDFLSAIKAWGELGLIEKAEETFEAMANAPEKLSSKYYNA 457

Query: 310 VISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLI 369
           +++VY +N  + K    ++ M  +GC    +T+  L      S  VE+    L     L 
Sbjct: 458 MLNVYAQNKLLSKGKQFVERMCRDGCPNGPLTWDALINLYVNSGEVEKADSFL-----LN 512

Query: 370 TTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKA 429
             ++     P   +   +++ +A++GD+ N E +F+ LK   Y      Y  L++AYV A
Sbjct: 513 VAEENPDRKPLFTSYFFLMKGYAKRGDIHNTEKIFDRLKNVGYAPRPLHYAVLLEAYVNA 572

Query: 430 KINDPNLLRRMILGGARP 447
           K+     L RM     RP
Sbjct: 573 KVPAHGFLERMRGDNVRP 590


>gi|357509403|ref|XP_003624990.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355500005|gb|AES81208.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 623

 Score =  166 bits (419), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 116/459 (25%), Positives = 233/459 (50%), Gaps = 14/459 (3%)

Query: 7   GEPVGSAFQSWMREGFPVHRGEIFHSINRLRKLQLNKRALEVMEWVIRERPYRPKELDYS 66
           G  + +A + W+ +G  + R EI  ++  LR+ ++  +AL++ EW+  ++     E DY+
Sbjct: 169 GPTIYTALEKWVEDGKELSREEISLTMINLRRRKIYLKALQLSEWLESKKHLEFVERDYA 228

Query: 67  YLLEFTIKNHGISQGEKLFCCIPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGH 126
             L+   K HG+ + E     IP+ ++ E++Y  L+  C+ +  +K + E   KM+ L  
Sbjct: 229 SQLDLIAKLHGLHKAEVYIEKIPESFRGEIIYRTLLANCVTQNNLKKAEEIFNKMKDLEF 288

Query: 127 SISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMK 186
            ++    N+L++L     ++K I ++L  M+ + V P   TF IL+ ++   ++I+G+ +
Sbjct: 289 PLTPFACNQLLLLYKRTDKKK-IADVLLLMEQENVKPSPLTFKILIDVKGQSNDIDGMDQ 347

Query: 187 VYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALE-KSMTGNNWSTLDVLIILY 245
           +   M+   +EP+  +  +L   +        A+  ++ +E +++  N W    +L+ LY
Sbjct: 348 IVDQMRAEGIEPDNYTKAVLVGHYISGGHDDKAKMLLKEMEGENLKENRW-VCRLLLALY 406

Query: 246 GYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATE 305
             L    ++ R+W   +  P+V  +  V AIEA+G++ ++  AE ++  M   ++ K T 
Sbjct: 407 AKLGMADEVGRVWKVCETRPSV--EDCVAAIEAWGKLKKIDEAEAVFEVM--ARKWKLTS 462

Query: 306 QYNSV-ISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALEL 364
           +  SV ++VY  N  + K   L+K M+  GC+   +T+  L     ++  VE+    L+ 
Sbjct: 463 KNCSVLLNVYANNKMLTKGKDLIKRMAHKGCRIGPLTWNALVKLYVQAGEVEKADSVLQ- 521

Query: 365 GMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIK 424
             K I    VR   P   +  +++E ++++GD+ N+E +F  +K+A Y      Y  LI+
Sbjct: 522 --KAIQQSPVR---PIFSSYNTLLEEYSKRGDIHNSEKIFYRMKQAGYISRLKQYQILIE 576

Query: 425 AYVKAKINDPNLLRRMILGGARPDAETYSLLKLAEQFQK 463
           AY +A +    +  R+      P+    +LL   + F+K
Sbjct: 577 AYRRANVPAYGIRDRLKADNVFPNKTLANLLVQVDGFKK 615


>gi|356503391|ref|XP_003520493.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At1g80270, mitochondrial-like [Glycine max]
          Length = 580

 Score =  160 bits (406), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 118/452 (26%), Positives = 221/452 (48%), Gaps = 23/452 (5%)

Query: 14  FQSWMREGFPVHRGEIFHSINRLRKLQLNKRALEVMEWVIRERPYRPKELDYSYLLEFTI 73
            + W+ EG         + + R RK +L  RAL + EW+  ++ +   E DY+  L+   
Sbjct: 142 LEKWLEEG---------NELTRXRKRKLFGRALLLSEWLESKKEFEFIERDYASRLDLIA 192

Query: 74  KNHGISQGEKLFCCIPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVF 133
           K  G+ + E     IP+    E++Y  L+  C+ +  +K + E   KM+ L   I+    
Sbjct: 193 KLRGLHKAEVYIETIPESCSREIMYRTLLANCVSQNNVKKAEEVFSKMKDLDLPITVFTC 252

Query: 134 NRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKR 193
           N L+ L     ++K I ++L  M+ +K+ P   ++ IL+  +    +I G+ ++   MK 
Sbjct: 253 NELLFLYKRNDKKK-IADLLLLMENEKIKPSRHSYSILIDTKGQSKDIGGMDQIVDRMKA 311

Query: 194 SEVEPNEVSYCILATAHAVARLYTVAETYVEALE-KSMTGNNWSTLDVLIILYGYLAKGK 252
             +EP+  +  +LA  +  A L    ET ++ +E +++  N W    +L+ LY  L K  
Sbjct: 312 QGIEPDINTQAVLARHYISAGLQDKVETLLKQMEGENLKQNRW-LCRILLPLYANLGKVD 370

Query: 253 DLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSV-I 311
           ++ RIW   +  P  R    + AIEA+G++ ++  AE+++  M  VK+ K + +  S+ +
Sbjct: 371 EVGRIWKVCETNP--RYDECLGAIEAWGKLNKIDEAEKVFEMM--VKKWKLSSKTCSILL 426

Query: 312 SVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITT 371
            VY  N  + K   L+K +   GC+   +T+  +     ++  VE+    L+   +    
Sbjct: 427 KVYANNEMLMKGKDLMKRIGDGGCRIGPLTWDTIVKLYVQTGEVEKADSVLQKAAQQSQM 486

Query: 372 KKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKI 431
           K      P   T L+I+E +A++GD+ N+E +F  +K+A+YT    +Y  L+ AY+ AK+
Sbjct: 487 K------PMFSTYLTILEQYAKRGDIHNSEKIFLRMKQADYTSKAKMYQVLMNAYINAKV 540

Query: 432 NDPNLLRRMILGGARPDAETYSLLKLAEQFQK 463
               +  R+      P+    + L   + F+K
Sbjct: 541 PAYGIRDRLKADSIYPNRNLVNQLVQVDGFRK 572


>gi|414884017|tpg|DAA60031.1| TPA: hypothetical protein ZEAMMB73_016344 [Zea mays]
          Length = 703

 Score =  160 bits (406), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 104/427 (24%), Positives = 220/427 (51%), Gaps = 10/427 (2%)

Query: 14  FQSWMREGFPVHRGEIFHSINRLRKLQLNKRALEVMEWVIRERPYRPKELDYSYLLEFTI 73
              W++ G  + R ++   +  LRK ++  +AL+ +EW+ R +    +E DY+  L+   
Sbjct: 266 LDGWVKIGNRLERDKVNMVLFHLRKQRMYNKALKFVEWIERRKLLNFEERDYASHLDLIA 325

Query: 74  KNHGISQGEKLFCCIPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVF 133
           +N+G+   +K    +P+ +++E+LY  L++ C+ +   + + +   ++R L   ++    
Sbjct: 326 RNYGVEAAQKYIERVPEAFRSEVLYETLLVNCVCRDDAQKAEQVFNEIRELSLPLTISAC 385

Query: 134 NRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKR 193
           N++++L     R K + +IL  M+ + +   + T+ +++ ++   ++I G+ +V + MK 
Sbjct: 386 NQMLLLYKRVSRNKVV-DILTLMEKENIKYSIFTYKLMIDLKVRSNDILGMEQVLNSMKE 444

Query: 194 SEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKD 253
           + +EPN     ++A  +        AE  + A+E  +  N  + +  L+ LY  L +  D
Sbjct: 445 NGLEPNFTIQTMVAKFYISGCFTEKAEEVINAMEVHVKANRHA-VRSLLDLYAILGRPVD 503

Query: 254 LERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISV 313
           +ER+W    E P +  + ++ AI+A+ ++  + RAEE++  +        ++ +N+++ V
Sbjct: 504 VERVWNLCAE-PKL--EDFLAAIKAWSKLGHIERAEEIFDVLVKTFPKLTSKYFNAMLEV 560

Query: 314 YCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKK 373
           Y +N  +DK+   ++ M ++GC    +T+   A+     NL E   KA    M +     
Sbjct: 561 YAENKLLDKSKKFIERMCLDGCTIGPLTWD--AVVKLYVNLGELS-KADSFLMNVTEDNP 617

Query: 374 VRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKIND 433
            R   P   + + +++ +AEKGD+ NAE +F+ +K+ N+   T  YN L+ AY  A++  
Sbjct: 618 DRH--PLFSSYVILLKAYAEKGDIHNAEKIFDRVKQTNFPARTLPYNLLLAAYASAQVTP 675

Query: 434 PNLLRRM 440
                RM
Sbjct: 676 YGFRERM 682


>gi|297837423|ref|XP_002886593.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297332434|gb|EFH62852.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 491

 Score =  151 bits (382), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 125/444 (28%), Positives = 213/444 (47%), Gaps = 14/444 (3%)

Query: 24  VHRGEIFHSINRLRKLQLNKRALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQGEK 83
           V + E+  +I +LR   L   AL++ E V+ ER       D +  L+   K  GI+ GE 
Sbjct: 53  VFKWEVGDTIKKLRNRGLYYPALKLSE-VMEERGMNKTVSDQAIHLDLVAKARGITAGEN 111

Query: 84  LFCCIPKDYQNELLYNNLVIACLDKGVIKLSLE-YMKKMRVLGHSISYLVFNRLIILNSS 142
            F  +P+  + EL Y +L + C  K ++    E  + KM+ L  + S + +N L+ L + 
Sbjct: 112 YFVDLPETSKTELTYGSL-LNCYCKELLTEKAEGLLNKMKELNITPSSMSYNSLMTLYTK 170

Query: 143 PGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRS-EVEPNEV 201
            G+ + +P +++++KA+ V P   T+++ M+  A  ++I G+ +V  +M R   V P+  
Sbjct: 171 TGQTEKVPAMIQELKAENVMPDSYTYNVWMRALAATNDISGVERVIEEMNRDGRVAPDWT 230

Query: 202 SYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATV 261
           +Y  +A+ +  A L   AE  ++ LE   T  +++    LI LYG L K  ++ RIW ++
Sbjct: 231 TYSNMASIYVDAGLSQKAEKALQELEMKNTQRDFTAYQFLITLYGRLGKLTEVYRIWRSL 290

Query: 262 Q-ELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFI 320
           +  +P   + +Y+  I+   ++  +  AE L+ E Q+          N +I  Y K G I
Sbjct: 291 RLAMPKTSNVAYLNMIQVLVKLNDLPGAETLFKEWQANCSTYDIRIVNVLIGAYAKEGLI 350

Query: 321 DKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEG--FKALELGMKLITTKKVRSST 378
           +KA  L ++    G K NA T+       F    V+ G    ALE   K ++  K     
Sbjct: 351 EKAKELKEKAPRRGGKANAKTWE-----IFMDYYVKSGDMAHALECMSKAVSIGKGDGGK 405

Query: 379 --PWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKINDPNL 436
             P  ET  +++  F +K DV  AENL E LK         ++ +LI+ Y  A  + P +
Sbjct: 406 WIPSQETVRTLMSYFEQKKDVNGAENLLEILKNGTDNIGAEIFESLIRTYAAAGKSHPAM 465

Query: 437 LRRMILGGARPDAETYSLLKLAEQ 460
            RR+ +     +  T  LL    Q
Sbjct: 466 RRRLKMENVEVNEVTKKLLDEVSQ 489


>gi|307136025|gb|ADN33879.1| DNA-binding protein [Cucumis melo subsp. melo]
          Length = 608

 Score =  150 bits (380), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 112/460 (24%), Positives = 226/460 (49%), Gaps = 21/460 (4%)

Query: 10  VGSAFQSWMREGFPVHRGEIFHSINRLRKLQLNKRALEVMEWVIRERPYRPKELDYSYLL 69
           V SA   W+ EG  + R +I  ++  LRK ++  +AL+  EW+         E DY+  L
Sbjct: 156 VTSALDKWVSEGHELSRDDISSTMFGLRKRRMFGKALQFSEWLEASGQLEFNEADYASHL 215

Query: 70  EFTIKNHGISQGEKLFCCIPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSIS 129
           +   K  G+ + E     IP  ++ E +Y  L+   +    +K + E   +M+ L   ++
Sbjct: 216 DLIAKVQGLHKAETYIAKIPNSFRGEAVYRTLLANYVLANDVKKAEEVFNRMKDLEFPMT 275

Query: 130 YLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYS 189
              +++++IL     RR+ I +IL  M+ + V P   T+ IL+  +   ++I G+ +V  
Sbjct: 276 TFAYDQMLILYKRIDRRR-IADILSLMEKENVKPRPFTYKILIDAKGLSNDISGMEQVVD 334

Query: 190 DMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEK-SMTGNNWSTLDVLIILYGYL 248
            MK   ++ +  +  +LA  + +  L   A   ++A E+ +  G+ W     L+ LYG L
Sbjct: 335 TMKAEGIKLDVDTLLLLAKHYVLGGLKDKAMPILKATEEVNSKGSRWPCR-YLLPLYGEL 393

Query: 249 AKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYN 308
               ++ R+W   +  PNV  +  + AI A+G++  +  AE+++  +    +  +T+ Y+
Sbjct: 394 QMEDEVRRLWEICEPNPNV--EECMAAIVAWGKLKNIQEAEKIFDRVVKTWKRLSTKHYS 451

Query: 309 SVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEG----FKAL-E 363
           ++I VY  +  + K   L+ +M+ +GC+ + + +  +     ++  VE+     FKA+ +
Sbjct: 452 TMIKVYGDSKMLTKGKELVNQMAKSGCRIDPMIWDAVVKLYVEAGEVEKADSFLFKAVKQ 511

Query: 364 LGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLI 423
            GMK           P  ++  +++  +A KGDV N+E +F +++++ Y  +   + TL+
Sbjct: 512 YGMK-----------PLFDSYRTLMVHYARKGDVHNSEKIFHKIRQSGYPTHFGQFVTLV 560

Query: 424 KAYVKAKINDPNLLRRMILGGARPDAETYSLLKLAEQFQK 463
           +AY+ AK     +  RM+     P+      L   + F++
Sbjct: 561 QAYLNAKTPAYGMRERMMADNVFPNKALAGKLAQLDSFRQ 600


>gi|108862755|gb|ABA99305.2| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|215704853|dbj|BAG94881.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|215712260|dbj|BAG94387.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 514

 Score =  150 bits (380), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 110/449 (24%), Positives = 209/449 (46%), Gaps = 8/449 (1%)

Query: 14  FQSWMREGFPVHRGEIFHSINRLRKLQLNKRALEVMEWVIRERPYRPKELDYSYLLEFTI 73
            + W  EG  V + ++   +  LRK +  K ALE+ EW+  +   R    D++  L+   
Sbjct: 63  LRRWAEEGRTVQKYQLNRVVRELRKYRRFKHALEICEWMRTQPEMRLLPGDHAVHLDLVA 122

Query: 74  KNHGISQGEKLFCCIPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVF 133
           K  G+   EK F  +P+  +     N L+ A +  G    +   +++M   G+    L F
Sbjct: 123 KVRGLPSAEKFFEDMPERAKGPSTCNALLHAYVQHGRRDKAEAMLEEMAKAGYLTCALPF 182

Query: 134 NRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKR 193
           N ++ L  S G  + +P ++++++   + P + T++I +   +  ++++   KVY  MK 
Sbjct: 183 NHMMSLYMSSGELEKVPEMIKELRRYTI-PDLVTYNIWLTYCSKKNSVKAAEKVYDLMKD 241

Query: 194 SEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKD 253
             V P+ +++ +L + +  A L+      +  +EK  +    +    L+ LY  L+   +
Sbjct: 242 ERVVPDWMTFSLLGSIYINAGLHVKGRDALVEMEKRASRKERAAYSSLLTLYASLSDRGN 301

Query: 254 LERIWATVQE-LPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVIS 312
           L+R+W  ++E         Y   + +  R   ++ AE  + E +S    + +   N++++
Sbjct: 302 LDRVWRKMRETFRKFSDTEYKCMLTSLTRFGDIAEAESFYSEWESASGTRDSRIPNTILA 361

Query: 313 VYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTK 372
            Y KNG ++KA G L  +   G KP+  T+     G      ++   K LE   K ++  
Sbjct: 362 FYIKNGMMEKAEGFLDHIVQKGVKPSYSTWELFVWGYLSDGRMD---KVLECLKKALSCL 418

Query: 373 KVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKIN 432
           +     P L T  +I     EKGD+  AE L    ++A Y   T +YN++++ Y KA++ 
Sbjct: 419 EKWDPNPQLAT--AIYSQIEEKGDIEAAEKLLVMFREAGYVT-TEIYNSVLRTYAKAELM 475

Query: 433 DPNLLRRMILGGARPDAETYSLLKLAEQF 461
              +  RM       D ET SLL+L  ++
Sbjct: 476 PLIVDERMDQDKVSMDDETRSLLRLTSKY 504


>gi|449506011|ref|XP_004162628.1| PREDICTED: pentatricopeptide repeat-containing protein At1g80270,
           mitochondrial-like [Cucumis sativus]
          Length = 613

 Score =  149 bits (375), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 113/444 (25%), Positives = 218/444 (49%), Gaps = 12/444 (2%)

Query: 7   GEPVGSAFQSWMREGFPVHRGEIFHSINRLRKLQLNKRALEVMEWVIRERPYRPKELDYS 66
           G  V SA   W+ EG  + R +I  ++  LRK ++  +AL+  EW+         E DY+
Sbjct: 157 GLTVSSALDKWVSEGKELSRDDISSAMLNLRKCRMYGKALQFSEWLEANGKLDFVEKDYA 216

Query: 67  YLLEFTIKNHGISQGEKLFCCIPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGH 126
             L+   K  G+   E     IPK +Q E++Y  L+  C+    ++ + E   KM+ L  
Sbjct: 217 SRLDLIGKLRGLRMAENYIAKIPKSFQGEVVYRTLLANCVIACNVQKAEEVFNKMKDLEF 276

Query: 127 SISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMK 186
            I+    N+L++L     +RK + +IL  M+ + V P   T+ IL+  +   ++I G+ +
Sbjct: 277 PITAFACNQLLLLYKRTDKRK-VADILLLMEKENVKPSRFTYRILIDTKGLSNDITGMEQ 335

Query: 187 VYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEK-SMTGNNWSTLDVLIILY 245
           V   MK   +E +  +  +LA  +    L   A+  ++ +E+ +  G+ W    +L+ LY
Sbjct: 336 VVDTMKAEGIELDVSTLSVLAKHYISGGLKDKAKAILKEMEEINSEGSRWPC-RILLPLY 394

Query: 246 GYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATE 305
           G L    ++ R+W      P++  +  + AI A+G++  +  AE+++  +    +  +  
Sbjct: 395 GELQMEDEVRRLWEICGSNPHI--EECMAAIVAWGKLKNIQEAEKIFDRVVKTGEKLSAR 452

Query: 306 QYNSVISVYCKNG-FIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALEL 364
            Y+++++VY ++   + K   ++K+M+ +G + + +T   +     ++  VE   KA   
Sbjct: 453 HYSTMLNVYREDSKMLTKGKEVVKQMAESGSRMDPVTLDAVVKLYVEAGEVE---KADSF 509

Query: 365 GMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIK 424
            +K +   K +   P   T +++++ +A +GDV NAE +F  ++K  Y      + TLI+
Sbjct: 510 LVKTVLQYKKK---PMFTTYITLMDRYASRGDVPNAEKIFGMMRKYGYVGRLSQFQTLIQ 566

Query: 425 AYVKAKINDPNLLRRMILGGARPD 448
           AYV AK     +  RM      P+
Sbjct: 567 AYVNAKAPAYGMRERMKADSVFPN 590


>gi|449506017|ref|XP_004162629.1| PREDICTED: pentatricopeptide repeat-containing protein At1g80270,
           mitochondrial-like [Cucumis sativus]
          Length = 608

 Score =  149 bits (375), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 109/459 (23%), Positives = 224/459 (48%), Gaps = 19/459 (4%)

Query: 10  VGSAFQSWMREGFPVHRGEIFHSINRLRKLQLNKRALEVMEWVIRERPYRPKELDYSYLL 69
           V SA   W+ EG  + R EI  ++  LRK ++  +AL+  EW+         + DY+  L
Sbjct: 156 VPSALDKWVSEGKDLSRAEISLAMLHLRKRRMFGKALQFSEWLEANGQLEFNQRDYASRL 215

Query: 70  EFTIKNHGISQGEKLFCCIPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSIS 129
           +   K  G+ + E     IP+ +Q E+++  L+   +    +K + E   KM+ L   ++
Sbjct: 216 DLIAKVQGLPKAESYIAKIPQSFQGEVIHRTLLANYVAANNVKKAEEVFNKMKDLEFPMT 275

Query: 130 YLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYS 189
               ++++IL     +RK + +IL  M+ + V P   T+ IL+  +   ++I G+ +V  
Sbjct: 276 PFAHDQMLILYKRIDKRK-LADILSLMEKENVKPSPFTYKILIDAKGLCNDISGMEQVVD 334

Query: 190 DMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLA 249
            MK   ++P+  +  +LA  +    L   A+  ++ +E++ +  +     +L+ LYG L 
Sbjct: 335 SMKAEGIKPDVSTLSLLAKHYVSNGLKDKAKVILKDMEENNSKGSRLPCRILLPLYGALQ 394

Query: 250 KGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNS 309
              ++ R+W   +  P++     + AI A+G++  V  AE+++       +  +T  YN+
Sbjct: 395 MEDEVRRLWKICEANPHMEES--MAAIVAWGKLKNVQEAEKIFDRFVKTWKKPSTRHYNT 452

Query: 310 VISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEG----FKALE-L 364
           +++VY  +  + K   L+ +M+ +GC+ + +T+  +     ++  VE+      KA++  
Sbjct: 453 MMNVYGGSKMLTKGKELVNQMAESGCRMDELTWDAVVKLYVEAGEVEKADSFLVKAVQKY 512

Query: 365 GMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIK 424
           GMK           P   +  ++++ +A +GDV NAE +F+++ ++ +      + TL++
Sbjct: 513 GMK-----------PLFTSYKTLMDHYARRGDVHNAEKIFDKMIQSGFVPRLGQFGTLLQ 561

Query: 425 AYVKAKINDPNLLRRMILGGARPDAETYSLLKLAEQFQK 463
           AYV +K     +  RM+     P+      L     F+K
Sbjct: 562 AYVNSKTPAYGMKDRMMAYNIYPNKALAGQLAQVNAFRK 600


>gi|148909871|gb|ABR18022.1| unknown [Picea sitchensis]
          Length = 561

 Score =  146 bits (368), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 113/467 (24%), Positives = 233/467 (49%), Gaps = 22/467 (4%)

Query: 3   RLPR-GEPVGSA---FQSWMREGFPVHRGEIFHSINRLRKLQLNKRALEVMEWVIRERPY 58
           R+ R G+P  SA    + W+ EG  V +  +   +  LRK   +K ALEV EW+ ++ P 
Sbjct: 99  RISRLGDPKRSAVEELERWITEGREVKKWVLREIVRELRKYYRHKHALEVFEWMSKKFPC 158

Query: 59  RPKELDYSYLLEFTIKNHGISQGEKLFCCIPKDYQNELLYNNLVIACLDKGVIKLSLEYM 118
                D +  L    K HGI+  EK +  +    +N L Y  L+   + +  I+ S   M
Sbjct: 159 SVG--DRAMHLGLIAKVHGIASAEKYYVDLHHYEKNHLTYFALLNCYVQEKNIEKSEAIM 216

Query: 119 KKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEAND 178
           ++++ LG   +   +  ++ L  +  + + +P ++++MK   ++  +  ++I M+  A  
Sbjct: 217 EELKDLGFIKTAFPYTEMMTLYMNTEQFEKVPLVIQEMKKKGISLDIHCYNIWMRSYAAL 276

Query: 179 HNIEGLMKVYSDMKRSE-VEPNEVSYCILATAHAVARLYTVAETYVEALEKSM----TGN 233
            +++ + +V+++++R + +  +   Y  LA  +  A++   A + ++ +E  M    T  
Sbjct: 277 SDMDQVAEVFNEIERDDNINTDWSIYSTLANIYINAKVLDKAGSALKEMENKMKEIETKK 336

Query: 234 NWSTLDVLIILYGYLAKGKDLERIWATVQ-ELPNVRSKSYVLAIEAFGRIAQVSRAEELW 292
           +    + LI L+G L    ++ RIW + +   P + ++SYV  + +   +  +  AE   
Sbjct: 337 DQLAYNHLISLHGRLGNKDEVYRIWQSFELAFPKMTNRSYVCLLSSLVGMGDIEGAEVFI 396

Query: 293 LEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKS 352
            + +S+K    +  Y ++++ Y + G++ KA  LL+ +   G KPNA T+  LA G  ++
Sbjct: 397 KKWESMKTFDDSRIYYALLNAYIEKGWLQKAELLLERVVDKGGKPNAKTWETLAEGYIQN 456

Query: 353 NLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEI---FAEKGDVGNAENLFEELKK 409
             + +  +A++  +       +  ++PW   +++++ +   F ++GDV +AE  F+ L+ 
Sbjct: 457 EQIHKAMEAMKRSL------SIEGNSPWQPKSVNVLALLKHFEKQGDVKSAEEFFKILRG 510

Query: 410 ANYTKYTFVYNTLIKAYVKAKINDPNLLRRMILGGARPDAETYSLLK 456
             +   T +YN+L++ YV      P +   M+     PD ET +LLK
Sbjct: 511 VKFVS-TEIYNSLLRTYVYVGKVPPRISELMLEDNVSPDEETDNLLK 556


>gi|15219808|ref|NP_176276.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75097554|sp|O22714.1|PPR86_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g60770
 gi|2462744|gb|AAB71963.1| Hypothetical protein [Arabidopsis thaliana]
 gi|27754491|gb|AAO22693.1| unknown protein [Arabidopsis thaliana]
 gi|28393975|gb|AAO42395.1| unknown protein [Arabidopsis thaliana]
 gi|332195609|gb|AEE33730.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 491

 Score =  146 bits (368), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 124/445 (27%), Positives = 212/445 (47%), Gaps = 16/445 (3%)

Query: 24  VHRGEIFHSINRLRKLQLNKRALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQGEK 83
           V + E+  +I +LR   L   AL++ E V+ ER       D +  L+   K   I+ GE 
Sbjct: 53  VFKWEVGDTIKKLRNRGLYYPALKLSE-VMEERGMNKTVSDQAIHLDLVAKAREITAGEN 111

Query: 84  LFCCIPKDYQNELLYNNLVIACLDKGVIKLSLE-YMKKMRVLGHSISYLVFNRLIILNSS 142
            F  +P+  + EL Y +L + C  K ++    E  + KM+ L  + S + +N L+ L + 
Sbjct: 112 YFVDLPETSKTELTYGSL-LNCYCKELLTEKAEGLLNKMKELNITPSSMSYNSLMTLYTK 170

Query: 143 PGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRS-EVEPNEV 201
            G  + +P +++++KA+ V P   T+++ M+  A  ++I G+ +V  +M R   V P+  
Sbjct: 171 TGETEKVPAMIQELKAENVMPDSYTYNVWMRALAATNDISGVERVIEEMNRDGRVAPDWT 230

Query: 202 SYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATV 261
           +Y  +A+ +  A L   AE  ++ LE   T  +++    LI LYG L K  ++ RIW ++
Sbjct: 231 TYSNMASIYVDAGLSQKAEKALQELEMKNTQRDFTAYQFLITLYGRLGKLTEVYRIWRSL 290

Query: 262 Q-ELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFI 320
           +  +P   + +Y+  I+   ++  +  AE L+ E Q+          N +I  Y + G I
Sbjct: 291 RLAIPKTSNVAYLNMIQVLVKLNDLPGAETLFKEWQANCSTYDIRIVNVLIGAYAQEGLI 350

Query: 321 DKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEG--FKALELGMKLITTKKVRSST 378
            KA+ L ++    G K NA T+       F    V+ G   +ALE   K ++  K     
Sbjct: 351 QKANELKEKAPRRGGKLNAKTWE-----IFMDYYVKSGDMARALECMSKAVSIGK-GDGG 404

Query: 379 PWL---ETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKINDPN 435
            WL   ET  +++  F +K DV  AENL E LK         ++  LI+ Y  A  + P 
Sbjct: 405 KWLPSPETVRALMSYFEQKKDVNGAENLLEILKNGTDNIGAEIFEPLIRTYAAAGKSHPA 464

Query: 436 LLRRMILGGARPDAETYSLLKLAEQ 460
           + RR+ +     +  T  LL    Q
Sbjct: 465 MRRRLKMENVEVNEATKKLLDEVSQ 489


>gi|326505170|dbj|BAK02972.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 510

 Score =  144 bits (364), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 113/450 (25%), Positives = 214/450 (47%), Gaps = 9/450 (2%)

Query: 14  FQSWMREGFPVHRGEIFHSINRLRKLQLNKRALEVMEWVIRERPYRPKELDYSYLLEFTI 73
            + W  EG  VH+ ++   +  LRK +  K ALE+ EW+  +   R    D++  L+   
Sbjct: 58  LRRWAEEGRAVHKYQLNRVVRELRKYRRFKHALEICEWMRTQPEIRLLPGDHAVHLDLVA 117

Query: 74  KNHGISQGEKLFCCIPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVF 133
           K  G++  EK F  +P+  +     N+L+ A +  G    +   +K+M   G+    L F
Sbjct: 118 KVRGLASAEKFFEDVPERAKGPSTCNSLLHAYVQHGARDKAEAMLKEMADAGYLTCALPF 177

Query: 134 NRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKR 193
           N ++ L  S G  + +P ++++++   + P + T++I +   +  ++++   KV+  MK 
Sbjct: 178 NHMMSLYMSVGELEKVPEMIKELRRYTI-PDLVTYNIWLTYCSRKNSVKSAEKVFDLMKD 236

Query: 194 SEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKD 253
             V P+ +++ +LA+ +  A L+      +  +EK  +    +    L+ +Y  L+   +
Sbjct: 237 DRVVPDWMTFSLLASIYINAGLHVKGRDALVEMEKRASRKERAAYSSLLTMYASLSDRGN 296

Query: 254 LERIWATV-QELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVIS 312
           L+R+W+ + Q         Y   + +  R   ++ AE ++ E +S    K +   N+++S
Sbjct: 297 LDRVWSKMRQTFRKFSDAEYKCMLTSLTRFGDIAAAEFVYGEWESQSGTKDSRIPNTILS 356

Query: 313 VYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTK 372
            Y KNG ++KA   L+ +   G KP+  T+     G   ++  E   K +E   K +++ 
Sbjct: 357 FYIKNGEMEKAESFLQYIVQKGVKPSYSTWELFVWGYLGND--ERTDKVMECLKKALSSL 414

Query: 373 KVRSSTPWLETTL-SIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKI 431
           +     P L   L S IE   +KGD+  AE L   L+ A Y   T +YN +++ Y KA++
Sbjct: 415 EKWEPNPQLVAALFSQIE---KKGDIEAAEELLVVLRGAGYVT-TEIYNLVLRTYAKAEM 470

Query: 432 NDPNLLRRMILGGARPDAETYSLLKLAEQF 461
               +  RM       D ET  LLK   ++
Sbjct: 471 MPLIIDERMDQDKVSMDDETRRLLKSTSKY 500


>gi|449437710|ref|XP_004136634.1| PREDICTED: pentatricopeptide repeat-containing protein At1g80270,
           mitochondrial-like [Cucumis sativus]
 gi|449506005|ref|XP_004162626.1| PREDICTED: pentatricopeptide repeat-containing protein At1g80270,
           mitochondrial-like [Cucumis sativus]
          Length = 606

 Score =  144 bits (364), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 112/460 (24%), Positives = 224/460 (48%), Gaps = 13/460 (2%)

Query: 7   GEPVGSAFQSWMREGFPVHRGEIFHSINRLRKLQLNKRALEVMEWVIRERPYRPKELDYS 66
           G  V SA   W+ EG  +   +I  ++  LR+ ++  +AL+  EW+         E DY+
Sbjct: 149 GLSVSSALDKWVSEGNELSWDDISSTMMSLRRRRMFGKALQFSEWLEASGQLEFNENDYA 208

Query: 67  YLLEFTIKNHGISQGEKLFCCIPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGH 126
             L+   K  G+ + E     IPK +Q E++Y  L+   +    +  + E   KM+ L  
Sbjct: 209 SRLDLIAKVQGLHKAESYIAKIPKSFQGEVMYRTLLANYVAANNVNKAEEVFNKMKDLEF 268

Query: 127 SISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMK 186
            ++   +N++++L     RRK I ++L  M+ + V P   T+ IL+  +    +I G+ +
Sbjct: 269 PMTTFAYNQVLVLYKRNDRRK-IADVLLLMEKENVKPSPFTYKILIDAKGLSKDISGMEQ 327

Query: 187 VYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEK-SMTGNNWSTLDVLIILY 245
           V   MK   +E +  + C+LA  +    L   A+  ++ +E+ +  G+ W    +L+ LY
Sbjct: 328 VVDTMKAEGIELDVFALCLLAKHYVSCGLKDKAKATLKEMEEINSKGSRWPC-RLLLPLY 386

Query: 246 GYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSV--KQLKA 303
           G L    ++ R+W   +  P++  +  + AI A+G++  +  AE+++ ++     K+  +
Sbjct: 387 GELEMEDEVRRLWEICEANPHI--EECMAAIVAWGKLKNIHEAEKIFDKVVKTWPKKKIS 444

Query: 304 TEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALE 363
           T+ Y ++I VY     + K   L+ +M+ +G   + + +  +     ++  VE   KA  
Sbjct: 445 TKHYCTMIKVYGDCKMLTKGKELVNQMAESGYSIDPLAWDAVVKLYVEAGEVE---KADT 501

Query: 364 LGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLI 423
             +K +   ++R   P   +  +++  +A +GDV NAE +F +++++ Y  +   + TLI
Sbjct: 502 FLVKAVKKYEMR---PLYCSYRTLMNHYARRGDVHNAEKIFYKMRQSGYGPWFNQFETLI 558

Query: 424 KAYVKAKINDPNLLRRMILGGARPDAETYSLLKLAEQFQK 463
           +AYV +K     +  RM+     P+      L   + F+K
Sbjct: 559 QAYVNSKTPAYGMRERMMADKLFPNKALAGKLAQVDSFRK 598


>gi|449506007|ref|XP_004162627.1| PREDICTED: pentatricopeptide repeat-containing protein At1g80270,
           mitochondrial-like [Cucumis sativus]
          Length = 610

 Score =  144 bits (363), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 104/454 (22%), Positives = 220/454 (48%), Gaps = 9/454 (1%)

Query: 10  VGSAFQSWMREGFPVHRGEIFHSINRLRKLQLNKRALEVMEWVIRERPYRPKELDYSYLL 69
           V SA   W+ +G  + R +I  ++  LR+ Q+ ++AL+  EW+         E DY+  +
Sbjct: 158 VASALVKWVSQGNKLSRDDISSTMISLRRRQMFRKALQFSEWLEANGQLEFNERDYASRV 217

Query: 70  EFTIKNHGISQGEKLFCCIPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSIS 129
               K  G+ + E     IPK +Q E+++  L+   +    ++ + E   K++ L   +S
Sbjct: 218 HLIAKVQGLHKAESYIAKIPKSFQGEVVHRALLANYVVANNVEKAEEVFNKIKDLEFPMS 277

Query: 130 YLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYS 189
              +N++++L     RRK I ++L  M+ + + P   T+ IL+  +   ++I G+ +V  
Sbjct: 278 IFAYNQMLVLYKKIDRRK-IADVLLLMEKENIKPCPFTYKILIDGKGLSNDISGMEQVVD 336

Query: 190 DMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLA 249
            MK   +E +  +  +LA  +    L   A+  ++ +E++ +        +L+  YG L 
Sbjct: 337 SMKAEGIELDVSTLSLLAKHYVSCGLKVKAKAILKEIEETNSNGPQWLCRILLPFYGKLQ 396

Query: 250 KGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNS 309
              ++ R+W   +  P++  +  + AI A+G++  V  AE+++  +    +  +   Y+ 
Sbjct: 397 MEDEVRRLWEICEANPHI--EECMAAIVAWGQLKNVQEAEKIFDRVVKTWKKLSARHYSI 454

Query: 310 VISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLI 369
           +++VY  +  + K   ++ +M+ +GC  + +T   +     ++  VE+    L   +K  
Sbjct: 455 MMNVYRDSKMLTKGKEVVNQMAESGCHIDLLTCNAIVKLYVEAGEVEKADSFLVKAVKKY 514

Query: 370 TTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKA 429
             K      P   +  ++++ +A +GDV NAE +F+++++++Y      + TLI+AYV A
Sbjct: 515 GMK------PLFTSYKTLMDHYARRGDVHNAEKIFDKMRQSSYIPRLGQFGTLIQAYVNA 568

Query: 430 KINDPNLLRRMILGGARPDAETYSLLKLAEQFQK 463
           K     +  RM+     P+      L   + F+K
Sbjct: 569 KTPAYGMRERMMADKVFPNKTLAGQLAQVDSFRK 602


>gi|449437712|ref|XP_004136635.1| PREDICTED: pentatricopeptide repeat-containing protein At1g80270,
           mitochondrial-like [Cucumis sativus]
          Length = 605

 Score =  144 bits (363), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 111/444 (25%), Positives = 216/444 (48%), Gaps = 12/444 (2%)

Query: 7   GEPVGSAFQSWMREGFPVHRGEIFHSINRLRKLQLNKRALEVMEWVIRERPYRPKELDYS 66
           G  V SA   W+ EG  + R +I  ++  LRK ++  +AL+  EW+         E DY+
Sbjct: 149 GLTVSSALDKWVSEGKELSRDDISSAMLNLRKCRMYGKALQFSEWLEANGKLDFVEKDYA 208

Query: 67  YLLEFTIKNHGISQGEKLFCCIPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGH 126
             L+   K  G+   E     IPK +Q E++Y  L++ C+    +  + +   KM+ L  
Sbjct: 209 SRLDLIGKLRGLRMAENYIAKIPKSFQGEVVYQTLLVNCVIASNVHKAEKVFNKMKNLEF 268

Query: 127 SISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMK 186
            I+    N+L++L     +RK I ++L  MK + V    ST+ IL+ +    ++I G+ +
Sbjct: 269 PITAFACNQLLLLYKRTDKRK-IADVLLLMKKENVKYSTSTYRILIDVNGLSNDITGMEE 327

Query: 187 VYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEK-SMTGNNWSTLDVLIILY 245
           V   MK   ++ +  +   L   +    L   A+  ++ +E+ +  G+ W    +L+ LY
Sbjct: 328 VVDSMKAEGIKLDVETLSRLVKHYVSGGLKDKAKAILKEMEEINSEGSRWPC-RILLPLY 386

Query: 246 GYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATE 305
           G L    ++ R+W      P++  +  + AI A+G++  +  AE+++  +    +  +  
Sbjct: 387 GELQMEDEVRRLWEICGSNPHI--EECMAAIVAWGKLKNIQEAEKIFDRVVKTGEKLSAR 444

Query: 306 QYNSVISVYCKNG-FIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALEL 364
            Y+++++VY ++   + K   ++K+M+ +G + + +T   +     ++  VE   KA   
Sbjct: 445 HYSTMLNVYREDSKMLTKGKEVVKQMAESGSRMDPVTLDAVVKLYVEAGEVE---KADSF 501

Query: 365 GMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIK 424
            +K +   K +   P   T +++++ +A +GDV NAE +F  ++K  Y      + TLI+
Sbjct: 502 LVKTVLQYKKK---PMFTTYITLMDRYASRGDVPNAEKIFGMMRKYGYVGRLSQFQTLIQ 558

Query: 425 AYVKAKINDPNLLRRMILGGARPD 448
           AYV AK     +  RM      P+
Sbjct: 559 AYVNAKAPAYGMRERMKADSVFPN 582


>gi|449462348|ref|XP_004148903.1| PREDICTED: pentatricopeptide repeat-containing protein At4g02820,
           mitochondrial-like [Cucumis sativus]
 gi|449491586|ref|XP_004158945.1| PREDICTED: pentatricopeptide repeat-containing protein At4g02820,
           mitochondrial-like [Cucumis sativus]
          Length = 531

 Score =  143 bits (361), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 116/459 (25%), Positives = 220/459 (47%), Gaps = 9/459 (1%)

Query: 4   LPRGEPVGSAFQSWMREGFPVHRGEIFHSINRLRKLQLNKRALEVMEWVIRERPYRPKEL 63
            P+   V +A + W  EG  V + E+  ++  LRKL+  K ALEV EW+  ++  R    
Sbjct: 59  FPKRSAV-TAIRKWQEEGRTVRKYELNRNVRELRKLKRYKHALEVCEWMTLQKDMRLVPG 117

Query: 64  DYSYLLEFTIKNHGISQGEKLFCCIPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMRV 123
           DY+  L+   K  G+++ EK F  +P   + + +  +L+ A +   + + +   M+KM  
Sbjct: 118 DYAVHLDLICKIRGLNRAEKFFEDLPDKIREQSVCTSLLHAYVQNNLSEKAEALMEKMSE 177

Query: 124 LGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEG 183
            G   S L FN ++ L+ S  + + +P ++  +K +   P V T+++L+ +    ++ E 
Sbjct: 178 CGFLKSPLSFNHMLSLHISNKQLEKVPALIEGLKKN-TKPDVVTYNLLLNVCTLQNDTEA 236

Query: 184 LMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLII 243
              ++ +MK+++++P+ VS+  LA  +   +L   A   ++ +EK    +N  +L  L+ 
Sbjct: 237 AENIFLEMKKTKIQPDWVSFSTLANLYCKNQLTEKAAATLKEMEKMAFKSNRLSLSSLLS 296

Query: 244 LYGYLAKGKDLERIWATVQ-ELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLK 302
           LY  L    ++ RIW  ++     +  + Y+  I +  ++ ++  AE+L+ E +SV   +
Sbjct: 297 LYTNLGDKNEVYRIWKKLKSSFRKMSDREYMCMISSLVKLNELEEAEKLYTEWESVSGTR 356

Query: 303 ATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKAL 362
            T   N ++  Y K   I++A      M   G  P+  T+  L  G  K N +E   K L
Sbjct: 357 DTRVSNVMLGAYIKKNQIEQAESFYNRMLQKGTVPSYTTWELLTWGYLKENQME---KVL 413

Query: 363 ELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTL 422
               K +   K  ++   L     + +   E+G++   E L   L+ A +   T +YN+L
Sbjct: 414 HFFRKAVNRVKKWNADERL--VKGVCKKLEEQGNINGVEQLLLILRNAGHVD-TEIYNSL 470

Query: 423 IKAYVKAKINDPNLLRRMILGGARPDAETYSLLKLAEQF 461
           ++ Y KA      +  RM     + + ET  LL+L  + 
Sbjct: 471 LRTYAKAGKMPLIVAERMERDNVQLNDETRELLRLTSKM 509


>gi|357151797|ref|XP_003575907.1| PREDICTED: pentatricopeptide repeat-containing protein At4g02820,
           mitochondrial-like [Brachypodium distachyon]
          Length = 501

 Score =  142 bits (357), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 109/450 (24%), Positives = 219/450 (48%), Gaps = 9/450 (2%)

Query: 14  FQSWMREGFPVHRGEIFHSINRLRKLQLNKRALEVMEWVIRERPYRPKELDYSYLLEFTI 73
            + W  EG  V + ++   +  LRK +  K ALE+ EW+  +   +    D++  L+   
Sbjct: 50  LRRWTEEGRTVQKYQLNRVVRELRKYRRFKHALEICEWMRTQPEMKLLPGDHAVHLDLVA 109

Query: 74  KNHGISQGEKLFCCIPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVF 133
           K  G++  EK F  +P+  +     N L+ A +  GV   +   +++M   G+    L F
Sbjct: 110 KVRGLASAEKFFEDVPERAKGPSTCNALLHAYVQNGVRDKAEAMLREMADAGYLTCALPF 169

Query: 134 NRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKR 193
           N ++ +  S G  + +P ++++++   + P + T++I +   +  ++++   KV+  MK 
Sbjct: 170 NHMMSMYMSSGELEKVPEMIKELRRYTI-PDLVTYNIWLTYCSRKNSVKTAEKVFDLMKD 228

Query: 194 SEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKD 253
            +V P+ +++ ++A+ +  A L+      +  +EK  +    +    L+ LY  L+   +
Sbjct: 229 DKVFPDWMTFSLMASIYINAGLHVKGRDALVEMEKRASRKERTAYSSLLTLYASLSDRGN 288

Query: 254 LERIWATVQELPNVRSKS-YVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVIS 312
           L+R+W+ ++E+    S + Y   + +  R   ++ AE ++ E +S    + +   N+++S
Sbjct: 289 LDRVWSKMREIFRKFSDTEYKCMLTSLTRFGDITAAESVYSEWESESGTRDSRIPNTILS 348

Query: 313 VYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTK 372
            + KNG ++ A   L+ +   G KP+  T+     G   ++  E   K LE   K +++ 
Sbjct: 349 FHIKNGKMEMAESFLQHIMQKGVKPSYSTWELFVWGYLGND--ERIDKILECLKKALSSL 406

Query: 373 KVRSSTPWLETTL-SIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKI 431
                 P L   L S+IE   ++GD+  AE L   L+ A Y   T +YN++++ Y KA++
Sbjct: 407 DKWEPNPQLVAALFSLIE---KRGDIEAAEELLVVLRGAGYVT-TEIYNSVLRTYSKAEM 462

Query: 432 NDPNLLRRMILGGARPDAETYSLLKLAEQF 461
               +  RM       D ET  LLKL  ++
Sbjct: 463 MPLIIDERMDQDKVSMDEETRGLLKLTSKY 492


>gi|255573975|ref|XP_002527905.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223532680|gb|EEF34462.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 490

 Score =  140 bits (353), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 113/422 (26%), Positives = 199/422 (47%), Gaps = 10/422 (2%)

Query: 24  VHRGEIFHSINRLRKLQLNKRALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQGEK 83
           V++ E+  ++ +LR   L   AL++ E  + +R       D +  L+   K  GI   E 
Sbjct: 53  VYKWEVGDTLKKLRSRGLYYPALKLSE-AMSKRGMNKTVSDQAIHLDLVAKTRGIPAAEI 111

Query: 84  LFCCIPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSP 143
            F  +P+  +N L Y  L+    ++ + + +   M+KM+ L   +S + +N L+ L +  
Sbjct: 112 FFIDLPETSKNHLTYGALLNCYCNQLMTEEAEALMEKMKELNLGLSSMSYNSLMTLYTKI 171

Query: 144 GRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRS-EVEPNEVS 202
           G+ + IP I+++MK+D + P   T+++ M+  A  ++I G  +V  +MKR   V  +  +
Sbjct: 172 GQPERIPGIIQEMKSDSIMPDSYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTT 231

Query: 203 YCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQ 262
           Y  LA+ +  A+L+  AE  ++ LEK     + S    LI LYG +    +L RIW +++
Sbjct: 232 YSNLASIYVDAQLFEKAEKTLKELEKRNVHRDHSAFQFLITLYGRIGNLHELYRIWRSLR 291

Query: 263 -ELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFID 321
              P   + SY+  I+    +  +  AE+ + E +S          N +I  Y K G ++
Sbjct: 292 LAFPKTSNISYLNMIQVLVNLKDLPGAEKCFREWESNCSGYDIRVANVLIKAYAKKGLLE 351

Query: 322 KASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWL 381
           KA  L +     G KPNA T+   +   F++  ++   + L   +    +K       W+
Sbjct: 352 KAEELKERAIGRGAKPNAKTWEIFSDYYFENGDIKLSVECLANAI----SKGRGDGQKWI 407

Query: 382 ---ETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKINDPNLLR 438
              E   S +  F ++ DV  AE   E LKKA       V+ +LI+ Y  A      L R
Sbjct: 408 PSPEVVASFMAHFEQQKDVDGAEGFIEILKKATDDVEANVFESLIRTYAAAGRTSQVLRR 467

Query: 439 RM 440
           R+
Sbjct: 468 RL 469


>gi|224072985|ref|XP_002303946.1| predicted protein [Populus trichocarpa]
 gi|222841378|gb|EEE78925.1| predicted protein [Populus trichocarpa]
          Length = 451

 Score =  139 bits (351), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 114/438 (26%), Positives = 204/438 (46%), Gaps = 12/438 (2%)

Query: 29  IFHSINR--LRKLQLNKRALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQGEKLFC 86
           IF S+N+  L     +  +L+  EW+ R +     E DY+  L+   K  G+ + EK   
Sbjct: 15  IFFSLNQTMLCSDLTSSVSLQFSEWLERSKQTDFTERDYACHLDCIAKVLGLWKAEKFIE 74

Query: 87  CIPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRR 146
            IP+ ++ +L+Y  L+ +C+    IK +    +KMR LG  I+     ++II+     ++
Sbjct: 75  KIPESFRGKLVYQTLLASCVSVLNIKKAESVFRKMRDLGLPITVEACEQMIIIYKRLEKK 134

Query: 147 KTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCIL 206
           K IPNIL  MK   + P   T+ +L+  +   ++  G+ K+   M+   +E +  +  ++
Sbjct: 135 K-IPNILLMMKDQNIKPSFLTYKLLIDAKCQFNDTTGMEKLVEAMRNEGMELDVFALAVI 193

Query: 207 ATAHAVARLYTVAETYVEALEK-SMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELP 265
           A  +    L   A+  ++ +EK    G        L+ LY  L    ++ RIW   +  P
Sbjct: 194 ARHYISVGLKDKADLILKQIEKRKQKGGGLGARRSLLSLYASLGNADEVGRIWKECKADP 253

Query: 266 NVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASG 325
             +    + AI A+G++ +V  AE +   M    +      Y S+++VY  N    K   
Sbjct: 254 --KQSECIAAIRAWGKLGKVEEAEAVSEMMLQTWKNPTFGYYTSLLNVYIDNNLTSKGKD 311

Query: 326 LLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTL 385
           L+++M   G     +T+  L     KS  VE   KA  + +K+   K+ R   P   T +
Sbjct: 312 LVEQMGDIGSWAGPLTWDALVRLYIKSGDVE---KAHSILLKVARMKRKR---PLYTTCI 365

Query: 386 SIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKINDPNLLRRMILGGA 445
           +++E +A++GD+ N E LF+ +++  YT     +  L+ AY+ AK     L  RM     
Sbjct: 366 AVMEHYAKRGDIHNTEKLFQSMRELGYTARFKPFEILVDAYINAKTPIYGLRARMKADNL 425

Query: 446 RPDAETYSLLKLAEQFQK 463
            P  E    + L + F++
Sbjct: 426 YPKKEFAGKMALVDCFRR 443


>gi|224085447|ref|XP_002307578.1| predicted protein [Populus trichocarpa]
 gi|222857027|gb|EEE94574.1| predicted protein [Populus trichocarpa]
          Length = 513

 Score =  139 bits (351), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 112/445 (25%), Positives = 206/445 (46%), Gaps = 8/445 (1%)

Query: 13  AFQSWMREGFPVHRGEIFHSINRLRKLQLNKRALEVMEWVIRERPYRPKELDYSYLLEFT 72
             + W  EG  V + E+   +  LRKL+  K ALEV EW+ ++   +    DY+  L+  
Sbjct: 59  TIRKWKEEGHNVRKYELNRIVRELRKLKRYKHALEVCEWMTKQSDIKLVPGDYAVHLDLI 118

Query: 73  IKNHGISQGEKLFCCIPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLV 132
            K  G++  EK F  IP   ++    + L+   +    I  +   M+KM   G   + L 
Sbjct: 119 AKIRGLNSAEKFFEDIPDKMRDYQACSALLHVYVQNKSISKAEALMEKMSECGFLKNALP 178

Query: 133 FNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMK 192
           +N ++ +  + G+ + +  I++++K  K +P V T+++ +   A+ +++E   KV+ ++K
Sbjct: 179 YNHMLSVYVANGQLEKVAEIIQELKK-KTSPDVVTYNMWLTACASQNDVETAEKVFMELK 237

Query: 193 RSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGK 252
           +S+++P+ V+Y  L   +        A   ++ +EK  +  N  T   L+ L+  +    
Sbjct: 238 KSKLDPDWVTYSTLTNLYIKKECLEKAAYTLKEVEKRASKKNRVTYSSLLSLHANMKDKD 297

Query: 253 DLERIWATVQELPN-VRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVI 311
            L R W  ++ + N +    Y   I +  ++ +   AE L+ E +SV   + +   N V+
Sbjct: 298 GLHRTWNKMKSVFNKMNDAEYNCMISSLVKLGEFGGAENLYNEWESVSATRDSRVSNIVL 357

Query: 312 SVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITT 371
           + Y     ++ A    + M   G  P   T+  L  G  K+  +E   K LE   K + +
Sbjct: 358 ASYINRNQMEDAENFCQRMVQKGITPCYTTWELLTCGHLKTEQME---KVLENFKKALCS 414

Query: 372 KKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKI 431
             VR  TP       I +   E+GD+  AE L   L+ A +   T +YN+L++ Y KA  
Sbjct: 415 --VRKWTPDKRLIGDIFKNLEERGDIEGAEKLLVILRDAGHVS-TMIYNSLLRTYAKAGK 471

Query: 432 NDPNLLRRMILGGARPDAETYSLLK 456
               +  RM       D ET+ L++
Sbjct: 472 MPVIIEERMQKDNVELDDETHKLIQ 496


>gi|302788498|ref|XP_002976018.1| hypothetical protein SELMODRAFT_415910 [Selaginella moellendorffii]
 gi|300156294|gb|EFJ22923.1| hypothetical protein SELMODRAFT_415910 [Selaginella moellendorffii]
          Length = 603

 Score =  139 bits (349), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 118/455 (25%), Positives = 206/455 (45%), Gaps = 22/455 (4%)

Query: 6   RGEPVGSAFQSWMREGFPVHRGEIFHSINRLRKLQLNKRALEVMEWVIRERPYRPKELDY 65
           + E + S    W  EG  +    I   INRL+       ALE++EWV+ E  Y+  +L  
Sbjct: 161 KDESMSSVLDKWKEEGKDLTVSMIVTVINRLKNSNRMAHALEMIEWVVDEPDYKDFKLAR 220

Query: 66  SYLLEFTIKNHGISQGEKLFCCIPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLG 125
           S+ LE T ++ GI+  EKLF  +  + +   +YN L+   +    +K +    ++M   G
Sbjct: 221 SFQLEITARSKGIAAAEKLFEELSAEEKTRPVYNALLTRYVFLHNVKKAEGLFEEMDKAG 280

Query: 126 H-SISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGL 184
             S S    N ++ L    G       +L + K   V P++ T+++++ ++A   ++EG+
Sbjct: 281 FLSQSPFALNLMMKLYKHKGDNAKFQEMLEKAKDVAVEPNIFTYNVMLDLKAKAGDVEGM 340

Query: 185 MKVYSDMK-RSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLII 243
            K++ +MK     +P+  SY  L   +  A L   AE  +  +E        +T + +++
Sbjct: 341 EKIFEEMKLNPNAKPDGTSYFTLCKGYLKAGLTDKAEVSLLRMEVGPFRRTKATFEYMML 400

Query: 244 LYGYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKA 303
            YG L    D+ER+W   + +P     S++    A     +V R + ++  M   K+ K 
Sbjct: 401 AYGQLGLISDVERMWQKCKMVPGDGFNSFLAFQRAMALAGEVQRVDSMFKHMDKWKRSKT 460

Query: 304 TE--QYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKA 361
            +  ++N+++  Y K G   +   L K+M+    +   + +    +   K+       KA
Sbjct: 461 VDLKRHNNLLLAYYKKGMKCEIKELEKKMNEMDLRVTLVDWEKEPIKMSKAA------KA 514

Query: 362 LELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNT 421
           +           VR            +E   EK DV  AE+ FE+ K  N  K   V+N 
Sbjct: 515 V-----------VRKDKEKEMAARKGLEEAVEKADVKAAESAFEKCKAGNMAKVG-VWNK 562

Query: 422 LIKAYVKAKINDPNLLRRMILGGARPDAETYSLLK 456
           L+KAYV A++     L+RM   G   + ET+SLLK
Sbjct: 563 LLKAYVNAQVPAYGFLQRMKAEGVEANEETHSLLK 597


>gi|115457716|ref|NP_001052458.1| Os04g0320200 [Oryza sativa Japonica Group]
 gi|32490390|emb|CAE04700.1| OSJNBa0041M06.2 [Oryza sativa Japonica Group]
 gi|38344779|emb|CAE01505.2| OSJNBb0026L04.10 [Oryza sativa Japonica Group]
 gi|113564029|dbj|BAF14372.1| Os04g0320200 [Oryza sativa Japonica Group]
 gi|125543501|gb|EAY89640.1| hypothetical protein OsI_11170 [Oryza sativa Indica Group]
 gi|125589896|gb|EAZ30246.1| hypothetical protein OsJ_14297 [Oryza sativa Japonica Group]
 gi|215767374|dbj|BAG99602.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 524

 Score =  137 bits (345), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 122/472 (25%), Positives = 208/472 (44%), Gaps = 51/472 (10%)

Query: 28  EIFHSINRLRKLQLNKRALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQGEKLFCC 87
           E+   + RLRK  L + AL++ E V+  R   P   D +  L+   K+ GI+  EK F  
Sbjct: 53  EVGVCVRRLRKQALYRPALKLSE-VMARRGMNPTVSDQAIRLDLVAKSRGIAAAEKYFLD 111

Query: 88  IPKDYQNELLYNNLVIACLDKGVIKLSLE-YMKKMRVLGHSISYLVFNRLIILNSSPGRR 146
           +P+  +  L Y  L + C  K ++    E  M KM+ L  + + + +N L+ L +   + 
Sbjct: 112 LPETSKTHLTYGAL-LNCYCKDLMTEKAEALMGKMKELNFAFTAMCYNSLMTLYTKVNQH 170

Query: 147 KTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRS-EVEPNEVSYCI 205
           + +P++++ MKAD V P + T+++ M+  A   +I+G+ +V  +MKR   V P+  +Y  
Sbjct: 171 EKVPSVIQDMKADDVLPDIYTYNVWMRALAARVDIKGVERVIEEMKRDGRVTPDWTTYSN 230

Query: 206 LATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQE-L 264
           LA+ +  A L+  AE  ++ LEK  T N+      LI LY       ++ R+W +++   
Sbjct: 231 LASIYVDAGLFEKAEAALKELEKWNTSNDLEAYQFLITLYARTQNLVEVHRVWRSLKRNQ 290

Query: 265 PNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSV---------------------KQLKA 303
           P   + SY+  I+A   +  +  AE  + E ++                        +KA
Sbjct: 291 PRRANMSYLNMIQALANLKDLPGAEACFKEWEAQYINPPKTNTKAPGTAETSSNESDVKA 350

Query: 304 TEQ----------------YNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLAL 347
           T+                  N++I  Y   G  DKA  + K   M G + NA T+     
Sbjct: 351 TKDKGTDGELKHPKYDIRVANAMIKAYITEGMFDKAVAVKKRAKMRGGRLNAKTWE---- 406

Query: 348 GCFKSNLVEEG-FKALELGMKLITTKKVRSSTPWL---ETTLSIIEIFAEKGDVGNAENL 403
             F  + ++EG  K +         K   +   W+   E T ++++ F +  DV  AE  
Sbjct: 407 -IFMEHYLKEGDLKMVHWCADRAIKKGHSAGRIWVPPHEVTETLMDYFEKNKDVDGAEKF 465

Query: 404 FEELKKANYTKYTFVYNTLIKAYVKAKINDPNLLRRMILGGARPDAETYSLL 455
            E LKK      T V+  L++ Y  A    P +  R+ +       ET  LL
Sbjct: 466 VEVLKKVQKDLGTVVFEPLVRTYAAAGKKLPGMRHRLKIENVEVSEETAKLL 517


>gi|242083618|ref|XP_002442234.1| hypothetical protein SORBIDRAFT_08g016710 [Sorghum bicolor]
 gi|241942927|gb|EES16072.1| hypothetical protein SORBIDRAFT_08g016710 [Sorghum bicolor]
          Length = 501

 Score =  136 bits (342), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 110/450 (24%), Positives = 208/450 (46%), Gaps = 10/450 (2%)

Query: 14  FQSWMREGFPVHRGEIFHSINRLRKLQLNKRALEVMEWVIRERP-YRPKELDYSYLLEFT 72
            + W  EG  V + ++   +  LRK    K ALE+ EW +R RP  R    D++  L+  
Sbjct: 50  LRRWAEEGRTVEKYQLNRVVRELRKYGRFKHALEICEW-MRTRPEMRLLPGDHAVHLDLV 108

Query: 73  IKNHGISQGEKLFCCIPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLV 132
            K  G++   K F  +P+  +     N L+ A +  G  + +   M +M   G+    L 
Sbjct: 109 AKVRGLASAVKFFEDMPERAKAPSTCNALLHAYVQHGAREKAEAMMAEMARAGYLTCALP 168

Query: 133 FNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMK 192
           FN ++ L  + G  + +P ++++++   V P + T+++ +   +   +++   KV++ MK
Sbjct: 169 FNHMMSLYMASGELERVPEMIKELRRYTV-PDLVTYNMWLTYCSKKKSVKSAEKVFALMK 227

Query: 193 RSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGK 252
              V P+ +++ +L + +  A L+      +  +EK  +    +    L+ LY  L+   
Sbjct: 228 DDRVVPDWMTFSLLGSIYINAGLHVEGRNALVEMEKMASRKERAAYSSLLTLYASLSDRG 287

Query: 253 DLERIWATVQE-LPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVI 311
           +L+R+W  ++E         Y   + +  R   ++ AE L+ E +S    + +   N+++
Sbjct: 288 NLDRVWNKMRETFRKFSDTEYKCMLTSLTRFNDIAAAEGLYREWESASGTRDSRIPNTIL 347

Query: 312 SVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITT 371
           S Y KNG I+KA   L ++   G KP+  T+     G    N  +   K LE   K +++
Sbjct: 348 SYYIKNGMIEKAESFLGQIVEKGVKPSYSTWELFIWGYLGDNKTD---KVLECLKKALSS 404

Query: 372 KKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKI 431
             +    P  E   +I     + GD+  AE L    + A Y   T +YN++++ Y +AK+
Sbjct: 405 --LEKWEPNHELATAIFSQVEKTGDIEAAEKLLVVFRDAGYVT-TEMYNSVLRTYAEAKL 461

Query: 432 NDPNLLRRMILGGARPDAETYSLLKLAEQF 461
               +  RM       D ET  LL+L  ++
Sbjct: 462 MPLIVDERMEQDKVAMDVETRRLLRLTSKY 491


>gi|116309055|emb|CAH66166.1| H0107B07.5 [Oryza sativa Indica Group]
          Length = 524

 Score =  135 bits (340), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 121/472 (25%), Positives = 208/472 (44%), Gaps = 51/472 (10%)

Query: 28  EIFHSINRLRKLQLNKRALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQGEKLFCC 87
           E+   + RLRK  L + AL++ E V+  R   P   D +  L+   K+ GI+  EK F  
Sbjct: 53  EVGVCVRRLRKQALYRPALKLSE-VMARRGMNPTVSDQAIRLDLVAKSRGIAAAEKYFLD 111

Query: 88  IPKDYQNELLYNNLVIACLDKGVIKLSLE-YMKKMRVLGHSISYLVFNRLIILNSSPGRR 146
           +P+  +  L Y  L + C  K ++    E  M KM+ L  + + + +N L+ L +   + 
Sbjct: 112 LPETSKTHLTYGAL-LNCYCKDLMTEKAEALMGKMKELNFAFTAMCYNSLMTLYTKVNQH 170

Query: 147 KTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRS-EVEPNEVSYCI 205
           + +P++++ MKAD V P + T+++ M+  A   +I+G+ +V  +MKR   V P+  +Y  
Sbjct: 171 EKVPSVIQDMKADDVLPDIYTYNVWMRALAARVDIKGVERVIEEMKRDGRVTPDWTTYSN 230

Query: 206 LATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQE-L 264
           LA+ +  A L+  AE  ++ LEK  T N+      LI LY       ++ R+W +++   
Sbjct: 231 LASIYVDAGLFEKAEAALKELEKWNTSNDLEAYQFLITLYARTQNLVEVHRVWRSLKRNQ 290

Query: 265 PNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSV---------------------KQLKA 303
           P   + SY+  I+A   +  +  AE  + E ++                        +KA
Sbjct: 291 PRRANMSYLNMIQALANLKDLPGAEACFKEWEAQYINPPKTNTKAPGTAETSSNESDVKA 350

Query: 304 TEQ----------------YNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLAL 347
           T+                  N++I  Y   G  D+A  + K   M G + NA T+     
Sbjct: 351 TKDKGTDGELKHPKYDIRVANAMIKEYITEGMFDQAVAVKKRAKMRGGRLNAKTWE---- 406

Query: 348 GCFKSNLVEEG-FKALELGMKLITTKKVRSSTPWL---ETTLSIIEIFAEKGDVGNAENL 403
             F  + ++EG  K +         K   +   W+   E T ++++ F +  DV  AE  
Sbjct: 407 -IFMEHYLKEGDLKMVHWCADRAIKKGHSAGRIWVPPHEVTETLMDYFEKNKDVDGAEKF 465

Query: 404 FEELKKANYTKYTFVYNTLIKAYVKAKINDPNLLRRMILGGARPDAETYSLL 455
            E LKK      T V+  L++ Y  A    P +  R+ +       ET  LL
Sbjct: 466 VEVLKKVQKDLGTVVFEPLVRTYAAAGKKLPGMRHRLKIENVEVSEETAKLL 517


>gi|125536853|gb|EAY83341.1| hypothetical protein OsI_38557 [Oryza sativa Indica Group]
          Length = 444

 Score =  135 bits (339), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 100/418 (23%), Positives = 194/418 (46%), Gaps = 8/418 (1%)

Query: 45  ALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQGEKLFCCIPKDYQNELLYNNLVIA 104
            L++ EW+  +   R    D++  L+   K  G+   EK F  +P+  +     N L+ A
Sbjct: 24  CLQICEWMRTQPEMRLLPGDHAVHLDLVAKVRGLPSAEKFFEDMPERAKGPSTCNALLHA 83

Query: 105 CLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPH 164
            +  G    +   +++M   G+    L FN ++ L  S G  + +P ++++++   + P 
Sbjct: 84  YVQHGRRDKAEAMLEEMAKAGYLTCALPFNHMMSLYMSSGELEKVPEMIKELRRYTI-PD 142

Query: 165 VSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVE 224
           + T++I +   +  ++++   KVY  MK   V P+ +++ +L + +  A L+      + 
Sbjct: 143 LVTYNIWLTYCSKKNSVKAAEKVYDLMKDERVVPDWMTFSLLGSIYINAGLHVKGRDALV 202

Query: 225 ALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQE-LPNVRSKSYVLAIEAFGRIA 283
            +EK  +    +    L+ LY  L+   +L+R+W  ++E         Y   + +  R  
Sbjct: 203 EMEKRASRKERAAYSSLLTLYASLSDRGNLDRVWRKMRETFRKFSDTEYKCMLTSLTRFG 262

Query: 284 QVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYR 343
            ++ AE  + E +S    + +   N++++ Y KNG ++KA G L  +   G KP+  T+ 
Sbjct: 263 DIAEAESFYSEWESASGTRDSRIPNTILAFYIKNGMMEKAEGFLDHIVQKGVKPSYSTWE 322

Query: 344 HLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENL 403
               G      ++   K LE   K ++  +     P L T  +I     EKGD+  AE L
Sbjct: 323 LFVWGYLSDGRMD---KVLECLKKALSCLEKWDPNPQLAT--AIYSQIEEKGDIEAAEKL 377

Query: 404 FEELKKANYTKYTFVYNTLIKAYVKAKINDPNLLRRMILGGARPDAETYSLLKLAEQF 461
               ++A Y   T +YN++++ Y KA++    +  RM       D ET SLL+L  ++
Sbjct: 378 LVMFREAGYVT-TEIYNSVLRTYAKAELMPLIVDERMDQDKVSMDDETRSLLRLTSKY 434


>gi|224119780|ref|XP_002331159.1| predicted protein [Populus trichocarpa]
 gi|118487894|gb|ABK95769.1| unknown [Populus trichocarpa]
 gi|222873242|gb|EEF10373.1| predicted protein [Populus trichocarpa]
          Length = 490

 Score =  134 bits (338), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 117/423 (27%), Positives = 197/423 (46%), Gaps = 12/423 (2%)

Query: 24  VHRGEIFHSINRLRKLQLNKRALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQGEK 83
           V + E+  +I +LR   L   A+++ E  +  R       D +  L+   K  GI   E 
Sbjct: 53  VFKWEVGDTIKKLRSRNLYYPAVKLSE-TMSSRGMNKTVSDQAIHLDLVAKTRGIPAAEN 111

Query: 84  LFCCIPKDYQNELLYNNLVIACLDKGVIKLSLEYM-KKMRVLGHSISYLVFNRLIILNSS 142
            F  +P+  +N   Y  L + C  K ++    E + +KM+ L   +S + +N L+ L + 
Sbjct: 112 YFIDLPETSKNLRTYGAL-LNCYCKELMTEEAEALIEKMKELNLGLSSMSYNSLMTLYTK 170

Query: 143 PGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRS-EVEPNEV 201
            G+ + IP I+++MKAD V P   T+++ M+  A  ++I G+ +V  +MKR   V  N  
Sbjct: 171 VGQPERIPAIIQEMKADNVMPDSYTYNVWMRALAAVNDISGVERVIEEMKRDGRVAANWT 230

Query: 202 SYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATV 261
           +Y  LA+ +  A  +  AE  ++ LEK     +      LI LYG   K  ++ RIW ++
Sbjct: 231 TYSNLASIYVDAGYFDKAEKALKELEKINANKDLFAFQFLITLYGRTGKLIEVYRIWRSL 290

Query: 262 Q-ELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFI 320
           +   P   + SY+  I+    +  V  AE+ + E +S          N VIS Y K G +
Sbjct: 291 RLAFPKTANISYLNMIQVLVNLKDVPGAEKCFREWESGCSTYDIRVANVVISAYAKEGLV 350

Query: 321 DKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPW 380
           DKA  L +     G KPN+ T+        K+  V+ G   +   +    +    +   W
Sbjct: 351 DKAEELKERARRRGAKPNSKTWEIFCDYYLKNGDVKLGVDCIANAV----SAGRGNGQKW 406

Query: 381 LETTL---SIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKINDPNLL 437
           + + +   S++  F ++ DV  AE+L E LKKA       V+ +LI+ Y  A      + 
Sbjct: 407 VPSPVIVGSLMAHFEQQKDVDGAEDLIEILKKAVDDVAVEVFESLIRTYAAAGRKSQLMR 466

Query: 438 RRM 440
           RR+
Sbjct: 467 RRL 469


>gi|115471209|ref|NP_001059203.1| Os07g0222700 [Oryza sativa Japonica Group]
 gi|34394024|dbj|BAC84055.1| putative DNA-binding protein [Oryza sativa Japonica Group]
 gi|113610739|dbj|BAF21117.1| Os07g0222700 [Oryza sativa Japonica Group]
 gi|117380751|gb|ABK34463.1| DNA-binding protein [Oryza sativa Japonica Group]
          Length = 411

 Score =  134 bits (337), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 93/365 (25%), Positives = 184/365 (50%), Gaps = 15/365 (4%)

Query: 87  CIPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNS--SPG 144
           CI +  +NE+LY  L++ C+  G I+ + E  K+++ L   ++  + N++I+L    +PG
Sbjct: 38  CIGRLCRNEVLYETLIVNCVLAGDIQKAEEVFKEIKDLCLRLTVTLCNQMILLYKRIAPG 97

Query: 145 RRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYC 204
           +   + ++L  M+ + V P   T+ +L+ ++   +++ G+  V ++MK   +EP+  +  
Sbjct: 98  K---VASVLMLMEKENVKPSAFTYRLLIDLKGRSNDLAGIEVVLNEMKAYGIEPSTSTQT 154

Query: 205 ILATAHAVARLYTVAETYVEALEKSMTG--NNWSTLDVLIILYGYLAKGKDLERIWATVQ 262
           ++A  +    L   AE  V+ +E  ++   +    +  L+ LY  L K  D+ RIW    
Sbjct: 155 MVARFYIHGGLTEKAEAVVKEMEAQLSNSKDGRHVIKSLLHLYAALNKPNDVARIWEMCT 214

Query: 263 ELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDK 322
           E P +  + ++ AI+A+G +  + +AEE +  M +  +  +++ YN++++VY +N  + K
Sbjct: 215 E-PML--EDFLSAIKAWGELGLIEKAEETFEAMANAPEKLSSKYYNAMLNVYAQNKLLSK 271

Query: 323 ASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLE 382
               ++ M  +GC    +T+  L      S  VE+    L     L   ++     P   
Sbjct: 272 GKQFVERMCRDGCPNGPLTWDALINLYVNSGEVEKADSFL-----LNVAEENPDRKPLFT 326

Query: 383 TTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKINDPNLLRRMIL 442
           +   +++ +A++GD+ N E +F+ LK   Y      Y  L++AYV AK+     L RM  
Sbjct: 327 SYFFLMKGYAKRGDIHNTEKIFDRLKNVGYAPRPLHYAVLLEAYVNAKVPAHGFLERMRG 386

Query: 443 GGARP 447
              RP
Sbjct: 387 DNVRP 391


>gi|22331104|ref|NP_188178.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75273796|sp|Q9LRP6.1|PP234_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g15590, mitochondrial; Flags: Precursor
 gi|11994226|dbj|BAB01348.1| DNA-binding protein [Arabidopsis thaliana]
 gi|20856658|gb|AAM26678.1| AT3g15590/MQD17_5 [Arabidopsis thaliana]
 gi|27363266|gb|AAO11552.1| At3g15590/MQD17_5 [Arabidopsis thaliana]
 gi|332642175|gb|AEE75696.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 610

 Score =  132 bits (333), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 113/458 (24%), Positives = 217/458 (47%), Gaps = 17/458 (3%)

Query: 10  VGSAFQSWMREGFPVHRGEIFHSINRLRKLQLNKRALEVMEWVIRERPYRPKELDYSYLL 69
           V    + W++EG  + + E+  +I+ LRK +     L++ EW+     +   E +Y+  L
Sbjct: 157 VKHVLEKWVKEGKDLSQAEVTLAIHNLRKRKSYAMCLQLWEWLGANTQFEFTEANYASQL 216

Query: 70  EFTIKNHGISQGEKLFCCIPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSIS 129
           +   K H + + E     IP+  + E++Y  L+  C+ K  +  + +   KM+ L    S
Sbjct: 217 DLVAKVHSLQKAEIFLKDIPESSRGEVVYRTLLANCVLKHHVNKAEDIFNKMKELKFPTS 276

Query: 130 YLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYS 189
               N+L++L S   R+K I ++L  M+ + + P  +T+H L+  +    +I G+ K+  
Sbjct: 277 VFACNQLLLLYSMHDRKK-ISDVLLLMERENIKPSRATYHFLINSKGLAGDITGMEKIVE 335

Query: 190 DMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALE-KSMTGNNWSTLDVLIILYGYL 248
            +K   +E +     ILA  +  A L   A+  ++ +E K +    W     L+ LY  +
Sbjct: 336 TIKEEGIELDPELQSILAKYYIRAGLKERAQDLMKEIEGKGLQQTPW-VCRSLLPLYADI 394

Query: 249 AKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYN 308
               ++ R+   V + P  R  + + AI+A+G++ +V  AE ++  +    ++     Y 
Sbjct: 395 GDSDNVRRLSRFVDQNP--RYDNCISAIKAWGKLKEVEEAEAVFERLVEKYKIFPMMPYF 452

Query: 309 SVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELG-MK 367
           +++ +Y +N  + K   L+K M   G      T+           LV+   KA E+G  +
Sbjct: 453 ALMEIYTENKMLAKGRDLVKRMGNAGIAIGPSTWHA---------LVKLYIKAGEVGKAE 503

Query: 368 LITTKKVRSST--PWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKA 425
           LI  +  + +   P   T ++I+E +A++GDV N E +F ++K+A+Y      Y T++ A
Sbjct: 504 LILNRATKDNKMRPMFTTYMAILEEYAKRGDVHNTEKVFMKMKRASYAAQLMQYETVLLA 563

Query: 426 YVKAKINDPNLLRRMILGGARPDAETYSLLKLAEQFQK 463
           Y+ AK     ++ RM      P+    + L     F+K
Sbjct: 564 YINAKTPAYGMIERMKADNVFPNKSLAAKLAQVNPFKK 601


>gi|449437992|ref|XP_004136774.1| PREDICTED: pentatricopeptide repeat-containing protein At1g80270,
           mitochondrial-like [Cucumis sativus]
          Length = 604

 Score =  132 bits (331), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 101/441 (22%), Positives = 211/441 (47%), Gaps = 13/441 (2%)

Query: 10  VGSAFQSWMREGFPVHRGEIFHSINRLRKLQLNKRALEVMEWVIRERPYRPKELDYSYLL 69
           V SA   W+ EG  ++   +F+ +     + ++    +  EW+         + DY+  L
Sbjct: 156 VPSALDKWVSEGKDLNICFLFYHLIACISVWVS----QFSEWLEANGQLEFNQRDYASRL 211

Query: 70  EFTIKNHGISQGEKLFCCIPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSIS 129
           +   K  G+ + E     IP+ +Q E+++  L+   +    +K + E   KM+ L   ++
Sbjct: 212 DLIAKVQGLPKAESYIAKIPQSFQGEVIHRTLLANYVAANNVKKAEEVFNKMKDLEFPMT 271

Query: 130 YLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYS 189
               ++++IL     +RK + +IL  M+ + V P   T+ IL+  +   ++I G+ +V  
Sbjct: 272 PFAHDQMLILYKRIDKRK-LADILSLMEKENVKPSPFTYKILIDAKGLCNDISGMEQVVD 330

Query: 190 DMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLA 249
            MK   ++P+  +  +LA  +    L   A+  ++ +E++ +  +     +L+ LYG L 
Sbjct: 331 SMKAEGIKPDVSTLSLLAKHYVSNGLKDKAKVILKDMEENNSKGSRLPCRILLPLYGALQ 390

Query: 250 KGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNS 309
              ++ R+W   +  P++     + AI A+G++  V  AE+++       +  +T  YN+
Sbjct: 391 MEDEVRRLWKICEANPHMEES--MAAIVAWGKLKNVQEAEKIFDRFVKTWKKPSTRHYNT 448

Query: 310 VISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLI 369
           +++VY  +  + K   L+ +M+ +GC+ + +T+  +     ++  VE   KA    +K +
Sbjct: 449 MMNVYGGSKMLTKGKELVNQMAESGCRMDELTWDAVVKLYVEAGEVE---KADSFLVKAV 505

Query: 370 TTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKA 429
              K +   P   T +++++ +A +GDV N E  F  +++  Y      + TLI+AYV A
Sbjct: 506 LQNKKK---PMFTTYITLMDRYASRGDVPNVEKNFAMMRRLGYVGRLSQFQTLIQAYVNA 562

Query: 430 KINDPNLLRRMILGGARPDAE 450
           K     +  RM      P+ +
Sbjct: 563 KAPAYGMRERMKADNVFPNKD 583


>gi|297834428|ref|XP_002885096.1| hypothetical protein ARALYDRAFT_479008 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297330936|gb|EFH61355.1| hypothetical protein ARALYDRAFT_479008 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 605

 Score =  132 bits (331), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 112/458 (24%), Positives = 214/458 (46%), Gaps = 17/458 (3%)

Query: 10  VGSAFQSWMREGFPVHRGEIFHSINRLRKLQLNKRALEVMEWVIRERPYRPKELDYSYLL 69
           V    + W++EG  + + E+  +I  LRK +     L++ EW+     +   E +Y+  L
Sbjct: 152 VKHVLEKWVKEGKDLSQAEVSLAIFHLRKRKYYAMCLQLWEWLGANTQFEFTEANYASQL 211

Query: 70  EFTIKNHGISQGEKLFCCIPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSIS 129
           +   K H + + E     IP+ ++ E++Y  L+  C+ K  +  + +   KM+ L    S
Sbjct: 212 DLVAKVHSLQKAENFLKDIPESFRGEVVYRTLLANCVLKHHVNKAEDLFNKMKELKFPTS 271

Query: 130 YLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYS 189
               N+L++L S   R+K I ++L  M+ + + P   T+  L+  +    +I G+ K+  
Sbjct: 272 VFACNQLLLLYSMHDRKK-ISDVLLLMERENIKPSRGTYQFLINSKGLAGDITGMEKIVE 330

Query: 190 DMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALE-KSMTGNNWSTLDVLIILYGYL 248
            MK   +E +      LA  +  A L   A+  ++ +E K +    W     L+ LY  +
Sbjct: 331 TMKEEGIEVDPELQATLAKYYIRAGLKERAQDLMKEIEGKGLQQTPW-VCRSLLPLYADI 389

Query: 249 AKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYN 308
               ++ R+   V +  N+R  + + AI A+G++ +V  AE ++  +    ++     Y 
Sbjct: 390 GDSDNVRRLSTFVDQ--NLRYDNCISAIRAWGKLKEVEEAEAVFERLVEKYKIFPMLPYF 447

Query: 309 SVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELG-MK 367
           +++ +Y +N  + K   L+K M   G      T+           LV+   KA E+G  +
Sbjct: 448 ALMEIYTENKMLAKGKDLVKRMGNAGVTIGPSTWHA---------LVKLYIKAGEVGKAE 498

Query: 368 LITTKKVRSST--PWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKA 425
           LI  +  + +   P   + ++I+E +A++GDV N E +F ++K+A+Y      Y T++ A
Sbjct: 499 LILNRATKDNKMRPMFISYMAILEEYAKRGDVHNTEKVFMKMKRASYAAQLMQYETVLLA 558

Query: 426 YVKAKINDPNLLRRMILGGARPDAETYSLLKLAEQFQK 463
           Y+KAK     +  RM      P+    + L     F+K
Sbjct: 559 YIKAKTPAYGMFERMKADNVFPNKSLAAKLAQVNPFKK 596


>gi|125579556|gb|EAZ20702.1| hypothetical protein OsJ_36321 [Oryza sativa Japonica Group]
          Length = 491

 Score =  131 bits (330), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 107/449 (23%), Positives = 203/449 (45%), Gaps = 16/449 (3%)

Query: 14  FQSWMREGFPVHRGEIFHSINRLRKLQLNKRALEVMEWVIRERPYRPKELDYSYLLEFTI 73
            + W  EG  V + ++   + +LRK +  K ALE      R  P R              
Sbjct: 48  LRRWAEEGRTVQKYQLNRVVCQLRKYRRFKHALERKLSFFRG-PRRCTSTSCQ------- 99

Query: 74  KNHGISQGEKLFCCIPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVF 133
           ++ G+   EK F  +P+  +     N L+ A +  G    +   +++M   G+    L F
Sbjct: 100 RSGGLPSAEKFFEDMPERAKGPSTCNALLHAYVQHGRRDKAEAMLEEMAKAGYLTCALPF 159

Query: 134 NRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKR 193
           N ++ L  S G  + +P ++++++   + P + T++I +   +  ++++   KVY  MK 
Sbjct: 160 NHMMSLYMSSGELEKVPEMIKELRRYTI-PDLVTYNIWLTYCSKKNSVKAAEKVYDLMKD 218

Query: 194 SEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKD 253
             V P+ +++ +L + +  A L+      +  +EK  +    +    L+ LY  L+   +
Sbjct: 219 ERVVPDWMTFSLLGSIYINAGLHVKGRDALVEMEKRASRKERAAYSSLLTLYASLSDRGN 278

Query: 254 LERIWATVQE-LPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVIS 312
           L+R+W  ++E         Y   + +  R   ++ AE  + E +S    + +   N++++
Sbjct: 279 LDRVWRKMRETFRKFSDTEYKCMLTSLTRFGDIAEAESFYSEWESASGTRDSRIPNTILA 338

Query: 313 VYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTK 372
            Y KNG ++KA G L  +   G KP+  T+     G      ++   K LE   K ++  
Sbjct: 339 FYIKNGMMEKAEGFLDHIVQKGVKPSYSTWELFVWGYLSDGRMD---KVLECLKKALSCL 395

Query: 373 KVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKIN 432
           +     P L T  +I     EKGD+  AE L    ++A Y   T +YN++++ Y KA++ 
Sbjct: 396 EKWDPNPQLAT--AIYSQIEEKGDIEAAEKLLVMFREAGYVT-TEIYNSVLRTYAKAELM 452

Query: 433 DPNLLRRMILGGARPDAETYSLLKLAEQF 461
              +  RM       D ET SLL+L  ++
Sbjct: 453 PLIVDERMDQDKVSMDDETRSLLRLTSKY 481


>gi|255573349|ref|XP_002527601.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223533018|gb|EEF34782.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 502

 Score =  131 bits (329), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 111/458 (24%), Positives = 215/458 (46%), Gaps = 9/458 (1%)

Query: 5   PRGEPVGS---AFQSWMREGFPVHRGEIFHSINRLRKLQLNKRALEVMEWVIRERPYRPK 61
           P GEP  S      +W++EG  +   E+   I  LR  +   +AL+V EW+  +      
Sbjct: 43  PLGEPDISLVPVLDNWVQEGKKIRGFELQKIIRDLRCHRRYTQALQVSEWMNGKGQSGFS 102

Query: 62  ELDYSYLLEFTIKNHGISQGEKLFCCIPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKM 121
             D++  L+   +  G+   E  F  +    +N+  Y  L+   + +G++  SL +M+KM
Sbjct: 103 PADHAVQLDLIGRVRGLESAESYFQNLVNQDRNDKTYGALLNCYVREGLVDKSLYHMQKM 162

Query: 122 RVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNI 181
           + LG + S L +N L+ L +  G+ + + ++L +MK + + P + ++ I M   A   ++
Sbjct: 163 KELGFASSPLNYNDLMCLYTRTGQLEKVTDVLSEMKENGITPDLFSYRICMSSCAARSDL 222

Query: 182 EGLMKVYSDMK-RSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDV 240
           +G+ ++  +M+ +S +  + V+Y  +A+ +  A L   A  Y++  E+ +  +     + 
Sbjct: 223 KGVEEILEEMENQSHISIDWVTYSTVASIYVKASLKEKALIYLKKCEQKVNRDALG-YNH 281

Query: 241 LIILYGYLAKGKDLERIWATVQ-ELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVK 299
           LI L   L    ++ R+W  V+ +     ++ Y+  + A  ++ ++  A++L  E +S  
Sbjct: 282 LISLNASLGIKDEVMRLWGLVKTKCKKQVNRDYITMLGALVKLEELEEADKLLQEWESSC 341

Query: 300 QLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGF 359
           Q       N ++  YC+ G I+KA  +LK++      P   ++  +A G      +E+ F
Sbjct: 342 QCYDFRVPNVLLIGYCQQGLIEKAEAMLKDIVKKQKNPTPNSWAIIAAGYVNKQNMEKAF 401

Query: 360 KALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVY 419
             ++  + +    K     P      SI+    E GDV + E  F  L +    K   +Y
Sbjct: 402 NCMKEALTVQAENK--GWRPKANLISSILSWLGENGDVEDVE-AFVNLLETKVPKDREIY 458

Query: 420 NTLIKAYVKAKINDPNLLRRMILGGARPDAETYSLLKL 457
           +TLIKAY++       +L  M       D ET ++L L
Sbjct: 459 HTLIKAYIRGGKQVDGVLENMTANKIDEDEETKTILSL 496


>gi|255559466|ref|XP_002520753.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223540138|gb|EEF41715.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 551

 Score =  131 bits (329), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 115/448 (25%), Positives = 206/448 (45%), Gaps = 14/448 (3%)

Query: 13  AFQSWMREGFPVHRGEIFHSINRLRKLQLNKRALEVMEWVIRERPYRPKELDYSYLLEFT 72
           A + W  EG  V + ++   +  LRK++  K ALEV EW+ +ER  +    DY+  L+  
Sbjct: 55  AIRKWKTEGHKVQKYQLNRIVRELRKMKRYKHALEVCEWMTQERELKLLPGDYAVHLDLV 114

Query: 73  IKNHGISQGEKLFCCIPKD---YQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSIS 129
            K  G++  EK F  +P +   +Q      +  + C  K V+K     M+KMR      +
Sbjct: 115 AKVRGLTSAEKFFEDLPDEMRGWQTCTALLHTYVKC--KDVVKAE-ALMEKMRDCSFVKN 171

Query: 130 YLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYS 189
            L +N +I L  + G       I+ ++K     P V TF++ + + A+ +++E   KV  
Sbjct: 172 PLPYNHMISLYIADGEFDKAKRIVEELKKS-TTPDVVTFNLWLSMCASLNDVESAKKVLL 230

Query: 190 DMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLA 249
           ++K+ ++E + ++Y  L   +   +L   A + ++ +EK  +  N      L+ LY  + 
Sbjct: 231 ELKKLKIEADWITYSTLTNLYLKNKLLEDAVSTLKEMEKRASRKNRLAYSSLLSLYTNMG 290

Query: 250 KGKDLERIWATVQEL-PNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYN 308
               + RIW  ++ L   +    Y   + +  ++ ++ +AE L+ E +SV      +  N
Sbjct: 291 DKDAVHRIWNKMKSLFCKMNDAEYTCMLSSLIKLEEIEKAENLYTEWESVSGTGDPQVAN 350

Query: 309 SVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKL 368
            +++ Y     I+ +    + M   G  P   T+  L  G  K+  +E   K L+   K 
Sbjct: 351 ILLAAYINRNQIEDSENFYRRMVEKGVCPCYTTWELLTWGHLKTKQME---KVLDCFKKA 407

Query: 369 ITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVK 428
           IT   V++ +P       + +I  EKG+   AE     L+ A Y   T +YN+L++ Y K
Sbjct: 408 ITI--VKTWSPDKRLVREVFKILEEKGNAEGAEEFLVMLRNAGYVS-TEIYNSLLRTYAK 464

Query: 429 AKINDPNLLRRMILGGARPDAETYSLLK 456
           A      +  RM   G   D ET+ L+K
Sbjct: 465 AGKMPLIVTERMKKDGVELDEETHRLIK 492


>gi|226530677|ref|NP_001151760.1| tetratricopeptide-like helical [Zea mays]
 gi|195649553|gb|ACG44244.1| tetratricopeptide-like helical [Zea mays]
 gi|223942137|gb|ACN25152.1| unknown [Zea mays]
 gi|413916645|gb|AFW56577.1| Tetratricopeptide-like helical [Zea mays]
          Length = 501

 Score =  130 bits (327), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 108/452 (23%), Positives = 206/452 (45%), Gaps = 15/452 (3%)

Query: 14  FQSWMREGFPVHRGEIFHSINRLRKLQLNKRALEVMEWVIRERPYRPKELDYSYLLEFTI 73
            Q W  EG  V + ++   +  LRK    K ALE+ EW+  +   R    D++  L+   
Sbjct: 51  LQRWADEGRTVQKYQLNRVVRELRKYGRFKHALEICEWMRTQPEMRLLPGDHAVHLDLVA 110

Query: 74  KNHGISQGEKLFCCIPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVF 133
           K  G++   K F  +P+  +     N L+ A +  G  + +   + +M  +G+    L F
Sbjct: 111 KVRGLASATKFFEDMPERAKGPSTCNALLHAYVQNGAREKAEAMLAEMARVGYLTCALPF 170

Query: 134 NRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKR 193
           N ++ L  + G  + +P ++++++   + P + T++I +   +   +++   KV+  MK 
Sbjct: 171 NHMMSLYMATGELERVPEMIKELRRYTL-PDLVTYNIWLTYCSKKDSVKSAEKVFGLMKD 229

Query: 194 SEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKD 253
             V P+ +++ +L + +  A L+      +  +EK  +    +    L+ LY  L+   +
Sbjct: 230 DCVVPDWMTFSLLGSIYINAGLHVEGRNALVEMEKRASRKERAAYSSLLTLYASLSDRGN 289

Query: 254 LERIW----ATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNS 309
           L+R+W     T ++  +   K  + ++  F  IA    AE ++ E +S    + +   N+
Sbjct: 290 LDRVWNKMRGTFRKFSDTEYKCMLTSLLRFDDIAA---AESIFSEWESTSGTRDSRIPNT 346

Query: 310 VISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLI 369
           ++S Y KNG I KA   L  +   G KP+  T+     G     L ++  K LE   K +
Sbjct: 347 ILSYYIKNGMIKKAESFLDHIVEKGVKPSYSTWEAFVWG----YLGDKTDKVLECMKKAL 402

Query: 370 TTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKA 429
           +   +    P  E   +I     + GD+  AE L    + A Y   T +YN++++ Y +A
Sbjct: 403 SC--LEKWEPNHELATAIFSQIEKTGDIEAAEKLLVIFRDAEYVT-TEMYNSVLRTYAEA 459

Query: 430 KINDPNLLRRMILGGARPDAETYSLLKLAEQF 461
           K+    +  RM       D ET  LL+L  ++
Sbjct: 460 KLMPLIVDERMEQDKVAMDVETKRLLRLTSKY 491


>gi|242091818|ref|XP_002436399.1| hypothetical protein SORBIDRAFT_10g001830 [Sorghum bicolor]
 gi|241914622|gb|EER87766.1| hypothetical protein SORBIDRAFT_10g001830 [Sorghum bicolor]
          Length = 536

 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 117/479 (24%), Positives = 205/479 (42%), Gaps = 53/479 (11%)

Query: 28  EIFHSINRLRKLQLNKRALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQGEKLFCC 87
           E+   + R+R+  L + AL++ E V+  R   P   D +  L+   K+ GI+  EK F  
Sbjct: 53  EVGVCVRRMRRNALYRPALKLSE-VMTRRGMNPTVSDQAICLDLIAKSRGIAAAEKYFLD 111

Query: 88  IPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRK 147
           +P+  +  L Y  L+ +   + + + +   M KM  L  + + + FN L+ + +   + +
Sbjct: 112 LPETSKTHLTYGALLNSYCKELMTEKAESLMAKMSELNFAFTAMPFNSLMTMYTKVNQPE 171

Query: 148 TIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRS-EVEPNEVSYCIL 206
            +P I++ MKAD V PHV T+++ M+  A  ++I G+ +V  +MKR   V P+  +Y  L
Sbjct: 172 KVPGIIQYMKADDVLPHVFTYNVWMRALAALNDIPGVERVIEEMKRDGRVAPDWTTYSNL 231

Query: 207 ATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQE-LP 265
           A+ +  A L+  AE  ++ LEK  T N+      LI LYG      ++ R+W +++   P
Sbjct: 232 ASIYVDAGLFEKAEAALKELEKRNTSNDVEAYQFLITLYGRTQNLVEVHRVWRSLKRNNP 291

Query: 266 NVRSKSYVLAIEAFGRIAQVSRAEELWLEMQS--------------VKQLKATEQYNS-- 309
            + + SY+  I+    +  +  AE  + E ++                 +  T+  +S  
Sbjct: 292 RMANMSYLNMIQVLANLKDLPAAEACFKEWEARHIHPPKTKAKDSGADNISTTDPESSSN 351

Query: 310 ---------------------------------VISVYCKNGFIDKASGLLKEMSMNGCK 336
                                            +I  Y   G +DKA  + K   M+G +
Sbjct: 352 LPNNQSGIKETGDEAAKDLQLKHPKYDIRVANAMIKAYIAEGMLDKAVAVKKRAKMHGGR 411

Query: 337 PNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGD 396
            NA T+        K+  ++      +  MK   +   R   P    T +++  F E  D
Sbjct: 412 LNAKTWEIFMEHHLKTGDLKMAHWCADRAMKKGHSSG-RIWVPPPAVTETLMSYFEENKD 470

Query: 397 VGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKINDPNLLRRMILGGARPDAETYSLL 455
           V  AE   E LKK      T V+  L++ Y  A    P + +R+ +       ET  LL
Sbjct: 471 VDGAEQYVESLKKVQKDLGTPVFEPLLRTYAAAGKKFPGMRQRLKIENVEVGEETDQLL 529


>gi|297737393|emb|CBI26594.3| unnamed protein product [Vitis vinifera]
          Length = 529

 Score =  129 bits (324), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 108/448 (24%), Positives = 201/448 (44%), Gaps = 14/448 (3%)

Query: 13  AFQSWMREGFPVHRGEIFHSINRLRKLQLNKRALEVMEWVIRERPYRPKELDYSYLLEFT 72
           A Q W  EG  V + E+   +  LRKL+  K ALE+ EW+ ++   +    DY+  L+  
Sbjct: 75  AIQRWREEGHTVRKYELNRIVRELRKLKRYKHALEICEWMTKQHDIKLLAGDYAVHLDLI 134

Query: 73  IKNHGISQGEKLFCCIPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLV 132
            K  G++  EK F  +    + +     L+   +   V + +   M+KM   G     L 
Sbjct: 135 AKIRGLASAEKFFEDLSDKMKGQPTCTALLHTYVQNKVSEKAEALMEKMSECGFLKCPLP 194

Query: 133 FNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMK 192
           +N +I L  S G+ + +P +++++K +  +P V T+++ + + A+ +++E   KV  ++K
Sbjct: 195 YNHMISLYISDGQLEKVPGMIQELKKN-TSPDVVTYNLWLTVCASQNDVETAEKVLLEIK 253

Query: 193 RSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGK 252
           +++++P+ V+Y  L   +    L   A T +  +EK  +         LI L+  +    
Sbjct: 254 KAKIDPDWVTYSSLTNLYIKKGLLDKAATTLNEMEKRTSRKGRIAYSSLISLHTNMQDKD 313

Query: 253 DLERIWATVQEL-PNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVI 311
            + RIW  ++ +   +    Y   I +  ++ +   AE L+ E  SV     +   N ++
Sbjct: 314 GVHRIWKKLKSIFHKMNDAEYTCMISSLVKLGEFEEAENLYSEWTSVSPTGDSRVPNILL 373

Query: 312 SVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITT 371
           + Y     ++ A     +M   G  P+  T+  L  G  K   +E+     E        
Sbjct: 374 AAYINKNEMEMAEKFYNQMVERGITPSYTTWELLTWGYLKKKQMEKVLDYFE-------- 425

Query: 372 KKVRSSTPWLETTLSIIEIFA---EKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVK 428
           K V S   W      + E++    E+G++  AE +   L+KA +   T +YN L++AY K
Sbjct: 426 KAVGSVKKWNPDEKLVREVYKNLEEQGNIEGAEKVLVILRKAGHVS-TEIYNWLLRAYAK 484

Query: 429 AKINDPNLLRRMILGGARPDAETYSLLK 456
           A      +   M       D ET+ L+K
Sbjct: 485 AGKMPLIVAEWMKKDKVEMDEETHRLIK 512


>gi|359490027|ref|XP_002279399.2| PREDICTED: pentatricopeptide repeat-containing protein At4g02820,
           mitochondrial-like [Vitis vinifera]
          Length = 642

 Score =  129 bits (323), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 108/448 (24%), Positives = 201/448 (44%), Gaps = 14/448 (3%)

Query: 13  AFQSWMREGFPVHRGEIFHSINRLRKLQLNKRALEVMEWVIRERPYRPKELDYSYLLEFT 72
           A Q W  EG  V + E+   +  LRKL+  K ALE+ EW+ ++   +    DY+  L+  
Sbjct: 188 AIQRWREEGHTVRKYELNRIVRELRKLKRYKHALEICEWMTKQHDIKLLAGDYAVHLDLI 247

Query: 73  IKNHGISQGEKLFCCIPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLV 132
            K  G++  EK F  +    + +     L+   +   V + +   M+KM   G     L 
Sbjct: 248 AKIRGLASAEKFFEDLSDKMKGQPTCTALLHTYVQNKVSEKAEALMEKMSECGFLKCPLP 307

Query: 133 FNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMK 192
           +N +I L  S G+ + +P +++++K +  +P V T+++ + + A+ +++E   KV  ++K
Sbjct: 308 YNHMISLYISDGQLEKVPGMIQELKKN-TSPDVVTYNLWLTVCASQNDVETAEKVLLEIK 366

Query: 193 RSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGK 252
           +++++P+ V+Y  L   +    L   A T +  +EK  +         LI L+  +    
Sbjct: 367 KAKIDPDWVTYSSLTNLYIKKGLLDKAATTLNEMEKRTSRKGRIAYSSLISLHTNMQDKD 426

Query: 253 DLERIWATVQEL-PNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVI 311
            + RIW  ++ +   +    Y   I +  ++ +   AE L+ E  SV     +   N ++
Sbjct: 427 GVHRIWKKLKSIFHKMNDAEYTCMISSLVKLGEFEEAENLYSEWTSVSPTGDSRVPNILL 486

Query: 312 SVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITT 371
           + Y     ++ A     +M   G  P+  T+  L  G  K   +E+     E        
Sbjct: 487 AAYINKNEMEMAEKFYNQMVERGITPSYTTWELLTWGYLKKKQMEKVLDYFE-------- 538

Query: 372 KKVRSSTPWLETTLSIIEIFA---EKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVK 428
           K V S   W      + E++    E+G++  AE +   L+KA +   T +YN L++AY K
Sbjct: 539 KAVGSVKKWNPDEKLVREVYKNLEEQGNIEGAEKVLVILRKAGHVS-TEIYNWLLRAYAK 597

Query: 429 AKINDPNLLRRMILGGARPDAETYSLLK 456
           A      +   M       D ET+ L+K
Sbjct: 598 AGKMPLIVAEWMKKDKVEMDEETHRLIK 625


>gi|302822814|ref|XP_002993063.1| hypothetical protein SELMODRAFT_431180 [Selaginella moellendorffii]
 gi|300139155|gb|EFJ05902.1| hypothetical protein SELMODRAFT_431180 [Selaginella moellendorffii]
          Length = 570

 Score =  129 bits (323), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 104/431 (24%), Positives = 196/431 (45%), Gaps = 16/431 (3%)

Query: 43  KRALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQGEKLFCCIPKDYQNELLYNNLV 102
           K   +V  ++IR   +   ELDY + + F          E +F  +P+ Y+ +     L+
Sbjct: 147 KPGWKVANYMIRSEKFELGELDYMFQIAFAALAGCDRAAENMFANLPRVYKRKKALLVLM 206

Query: 103 IACLDKGVIKLSLEYMKKMRVLGHSISYL---VFNRLIILNSSPGRRKTIPNILRQMKAD 159
                +   ++ +E +   + L H   Y      N++++ +  P  RK IP++  + K+ 
Sbjct: 207 AGSSPQRENRVVMERL--FKELKHRSWYTEASALNQMMLFSLQPDLRKRIPDLFEEAKSL 264

Query: 160 KVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRS-EVEPNEVSYCILATAHAVARLYTV 218
            VAP VS++++ +     + N  GL +VY  ++      P+E +  ILA  +     +  
Sbjct: 265 GVAPDVSSYNLYLGFHCKEKNASGLEEVYQMLQEDPNARPDESTLLILACGYISVGCFDK 324

Query: 219 AETYV----EALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSKSYVL 274
           A   +    E L+  +     +T + L+ LYG     + +E IW+ +   P     SY  
Sbjct: 325 AGKALVELEEGLDSGLFRRKQATYNKLLRLYGDTKDKEGVESIWSILSSRPLKAVDSYSY 384

Query: 275 AIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNG 334
           AI AFG+   V +AEE++     V  L  T Q  +++SVY   G+ DKA  L +++    
Sbjct: 385 AIAAFGKAEGVHKAEEIF---AKVDGLLETNQVIAMLSVYAHYGYADKARELFQKLPRKR 441

Query: 335 CKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEK 394
            K   + Y++L  G  +   V++  +   +G  ++  + + S+  W    L +++ FA +
Sbjct: 442 MKHRLVVYKYLIAGYLREGEVKKALQVFSMGCTVLRDRCICSA--WERVVLDLLDHFASR 499

Query: 395 GDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKINDPNLLRRMILGGARPDAETYSL 454
           G+V   + +F       +     VY  ++KAY+    +    +   +  G   DAET  L
Sbjct: 500 GEVAVIDRIFRMNSVLKHFINMRVYRVVLKAYLNHGASLKRFMDWTMEMGFSVDAETREL 559

Query: 455 LKLAE-QFQKK 464
           L L + +F+K+
Sbjct: 560 LTLLQSRFRKR 570


>gi|147804811|emb|CAN64701.1| hypothetical protein VITISV_037299 [Vitis vinifera]
          Length = 1111

 Score =  128 bits (321), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 108/448 (24%), Positives = 201/448 (44%), Gaps = 14/448 (3%)

Query: 13  AFQSWMREGFPVHRGEIFHSINRLRKLQLNKRALEVMEWVIRERPYRPKELDYSYLLEFT 72
           A Q W  EG  V + E+   +  LRKL+  K ALE+ EW+ ++   +    DY+  L+  
Sbjct: 75  AIQRWREEGHTVRKYELNRIVRELRKLKRYKHALEICEWMTKQHDIKLLAGDYAVHLDLI 134

Query: 73  IKNHGISQGEKLFCCIPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLV 132
            K  G++  EK F  +    + +     L+   +   V + +   M+KM   G     L 
Sbjct: 135 AKIRGLASAEKFFEDLSDKMKGQPTCTALLHTYVQNKVSEKAEALMEKMSECGFLKCPLP 194

Query: 133 FNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMK 192
           +N +I L  S G+ + +P +++++K +  +P V T+++ + + A+ +++E   KV  ++K
Sbjct: 195 YNHMISLYISDGQLEKVPGMIQELKKN-TSPDVVTYNLWLTVCASQNDVETAEKVLLEIK 253

Query: 193 RSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGK 252
           +++++P+ V+Y  L   +    L   A T +  +EK  +         LI L+  +    
Sbjct: 254 KAKIDPDWVTYSSLTNLYIKKGLLDKAATTLNEMEKRTSRKGRIAYSSLISLHTNMQDKD 313

Query: 253 DLERIWATVQEL-PNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVI 311
            + RIW  ++ +   +    Y   I +  ++ +   AE L+ E  SV     +   N ++
Sbjct: 314 GVHRIWKKLKSIFHKMNDAEYTCMISSLVKLGEFEEAENLYSEWTSVSPTGDSRVPNILL 373

Query: 312 SVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITT 371
           + Y     ++ A     +M   G  P+  T+  L  G  K   +E+     E        
Sbjct: 374 AAYINKNEMEMAEKFYNQMVERGITPSYTTWELLTWGYLKKKQMEKVLDYFE-------- 425

Query: 372 KKVRSSTPWLETTLSIIEIFA---EKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVK 428
           K V S   W      + E++    E+G++  AE +   L+KA +   T +YN L++AY K
Sbjct: 426 KAVGSVKKWNPDEKLVREVYKNLEEQGNIEGAEKVLVILRKAGHVS-TEIYNWLLRAYAK 484

Query: 429 AKINDPNLLRRMILGGARPDAETYSLLK 456
           A      +   M       D ET+ L+K
Sbjct: 485 AGKMPLIVAEWMKKDKVEMDEETHRLIK 512


>gi|302780277|ref|XP_002971913.1| hypothetical protein SELMODRAFT_412643 [Selaginella moellendorffii]
 gi|300160212|gb|EFJ26830.1| hypothetical protein SELMODRAFT_412643 [Selaginella moellendorffii]
          Length = 570

 Score =  128 bits (321), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 105/431 (24%), Positives = 196/431 (45%), Gaps = 16/431 (3%)

Query: 43  KRALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQGEKLFCCIPKDYQNELLYNNLV 102
           K   +V  ++IR   +   ELDY + + F          E +F  +P+ Y+ +     L+
Sbjct: 147 KPGWKVANYMIRSEKFELGELDYMFQIAFAALAGCDRAAENIFANLPRVYKRKKALLVLM 206

Query: 103 IACLDKGVIKLSLEYMKKMRVLGHSISYLV---FNRLIILNSSPGRRKTIPNILRQMKAD 159
                +   ++ +E  K  + L H   Y      N++++ +  P  RK IP++  + K+ 
Sbjct: 207 AGSSPQRENRVVME--KLFKELKHRSWYTEASGLNQMMLFSLQPDLRKRIPDLFEEAKSL 264

Query: 160 KVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRS-EVEPNEVSYCILATAHAVARLYTV 218
            VAP VS++++ +     + N  GL +VY  ++      P+E +  ILA  +     +  
Sbjct: 265 GVAPDVSSYNLYLGFHCKEKNASGLEEVYQMLQEDPNARPDESTLLILACGYISVGCFDK 324

Query: 219 AETYV----EALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSKSYVL 274
           A   +    E L+  +     +T + L+ LYG     + +E IW+ +   P     SY  
Sbjct: 325 AGKALVELEEGLDSGLFRRKQATYNKLLRLYGDTKDKEGVENIWSILSSRPLKAVDSYSY 384

Query: 275 AIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNG 334
           AI AFG+   V +AEE++     V  L  T Q  +++SVY   G+ DKA  L +++    
Sbjct: 385 AIAAFGKAEGVHKAEEIF---AKVDGLLETNQVIAMLSVYTHYGYADKARELFQKLPRKR 441

Query: 335 CKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEK 394
            K   + Y++L  G  +   V++  +   +G  ++  + + S+  W    L +++ FA +
Sbjct: 442 MKHRLVVYKYLIAGYLREGEVKKALQVFTMGCTVLRDRCICSA--WERVVLDLLDHFASR 499

Query: 395 GDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKINDPNLLRRMILGGARPDAETYSL 454
           G+V   + +F       +     VY  ++KAY+    +    +   +  G   DAET  L
Sbjct: 500 GEVAVIDRIFRMNSVLKHFINMRVYRVVLKAYLNHGASLKRFMDWTMEMGFSVDAETREL 559

Query: 455 LKLAE-QFQKK 464
           L L + +F+K+
Sbjct: 560 LTLLQSRFRKR 570


>gi|302798621|ref|XP_002981070.1| hypothetical protein SELMODRAFT_444770 [Selaginella moellendorffii]
 gi|300151124|gb|EFJ17771.1| hypothetical protein SELMODRAFT_444770 [Selaginella moellendorffii]
          Length = 1138

 Score =  127 bits (320), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 109/458 (23%), Positives = 212/458 (46%), Gaps = 26/458 (5%)

Query: 14  FQSWMREGFPVHRGEIFHSINRLRKLQLNKRALEVMEWVIRERPYRPKELDYSYL-LEFT 72
            + W  EG  + +  +   + +LRK +    ALEV +W+   + + P++LD   L ++  
Sbjct: 98  LKEWEEEGNVLDKEMLRAIMLKLRKWKRGSLALEVADWMYYTKQF-PQDLDDVILRMDMA 156

Query: 73  IKNHGISQGEKLFCCIPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLV 132
           ++   I + +K+F  +    +    YN + +    + +I  + ++  K +      + + 
Sbjct: 157 VRAKKIRRAQKIFKKLQAWEKTTDAYNTMFLIFSQRKMILHADDFYYKFKEAKLKPNDIT 216

Query: 133 FNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVY---- 188
           F+ L  L    G    +  +   ++A  + P V   + LM  +   H I    +++    
Sbjct: 217 FSILACLYRRCGLHNKVVRLQEDIEAAGMKPCVCFLNNLMVSKYELHGISSAEEIFNQLV 276

Query: 189 ---SDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNW----STLDVL 241
              SD+KRS +     +Y ++A ++  A ++  A+  +E +EK+M   ++     T  +L
Sbjct: 277 PAGSDLKRSHLS----TYSMMAASYLSAGMHDKAQNLLEVIEKAMDQGSFPKLRRTYHIL 332

Query: 242 IILYGYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQL 301
           I +Y  +     +ER+W  +++L   +++ YV  IE+ GR  +V  AE+ + E      L
Sbjct: 333 ISMYSTMKNRDGMERVWKKIEDL---KAQDYVAMIESCGRADEVGSAEKYFKEADRKGLL 389

Query: 302 KATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKA 361
                + +++ VY   G  DKA  L K+M       +A+ Y ++ L    +  ++   + 
Sbjct: 390 NQPSLFAALLGVYAGKGQADKAEKLFKKMKEQDVSRDALCYHYIILANLNARNIDRAVEI 449

Query: 362 LELGMKLITTKKVRSSTPWLETTLSIIEIFA-EKGDVGNAENLFEELKKANYTKYTFVYN 420
           LEL        +   S P+L T   +++  A E GDV  AE L  + +K  Y     VYN
Sbjct: 450 LELAE--AAGMRDGRSRPFLGTFCDVLKTIARETGDVALAETLLADWRKGKYRTDIAVYN 507

Query: 421 TLIKAYVKA--KINDPNLLRRMILGGARPDAETYSLLK 456
            L++ Y+KA  ++  P  L+R+     +P  ET+ LL+
Sbjct: 508 HLLRVYLKAGKQVQGP-FLKRLAGNNMKPTRETHQLLQ 544



 Score =  109 bits (273), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 111/470 (23%), Positives = 209/470 (44%), Gaps = 32/470 (6%)

Query: 1    IERLPRGEPVGSAFQSWMRE-GFPVHRGEIFHSINRLRKLQLNKRALEVMEWVI--RERP 57
            ++R+ RG         W+R     V + E  + + RLRK +  K ALE+ +W+   R RP
Sbjct: 678  VQRIVRG---------WLRSRDVEVGKHEFVYVMRRLRKRKRVKHALEIADWMALSRPRP 728

Query: 58   YRPKELDYSYLLEFTIKNHGISQGEKLFCCIPKDYQNELLYNNLVIACLDKGVIKLSLEY 117
            +     D  + ++   +   + + E++F  +  ++++E+ YN L+++   K     +   
Sbjct: 729  FTLTTKDNIFRMDLASRCGSVGKAERIFERLAPEHRSEVAYNALLLSYTKKKKRGRAERL 788

Query: 118  MKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEAN 177
             K+++  G   S    N L  +         +  + ++ +   V   +  +++L+  +  
Sbjct: 789  FKELKATGTISSCYSLNLLASMYRQLRLDAEVLMLAKEAQKLGVELDMCFYNLLLPAKFR 848

Query: 178  DHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVA---ETYVEALEKSMTGNN 234
               +E + K+Y+ +      P + +     T  A+A +Y  A   +  +E LE    G  
Sbjct: 849  VQGLEDVEKLYATI----TSPRDRTRFF--TCLAMANIYVSAGRNDKVLEMLELIDQGME 902

Query: 235  WSTL-------DVLIILYGYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSR 287
              T+       +VLI +Y  L  G  +ER W  +++     ++ Y   I A+G++  V R
Sbjct: 903  AGTIVKQRRRYNVLISMYASLEDGARVERTWERLKQQRQPNTEDYCCIIRAWGKLGHVVR 962

Query: 288  AEELW-LEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMN-GCKPNAITYRHL 345
            AE ++ +   + K LK +  +N+++ VY   G  ++A GL++ M    G K +   Y HL
Sbjct: 963  AETIFQVAEANEKSLKYSTVFNAMMFVYSVAGMREEAEGLVRRMEYELGVKLDPWCYHHL 1022

Query: 346  ALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFE 405
             L   K+  + +    L         KK R  TP   T  + +   A+ GDV  AE    
Sbjct: 1023 VLLYAKAGDIGKMLSTLRAAQ--ACGKKERRFTPLAATLWAALNTLADAGDVDTAEETLT 1080

Query: 406  ELKKANYTKYTFVYNTLIKAYVKAKINDPNLLRRMILGGARPDAETYSLL 455
              K++ Y   T +YN L++A++ A       + RM+  G  P+ ET  L 
Sbjct: 1081 RWKRSGYRVTTGLYNRLLRAHLVAARPTERFVERMLADGVVPNGETEKLF 1130


>gi|302801578|ref|XP_002982545.1| hypothetical protein SELMODRAFT_421999 [Selaginella moellendorffii]
 gi|300149644|gb|EFJ16298.1| hypothetical protein SELMODRAFT_421999 [Selaginella moellendorffii]
          Length = 1138

 Score =  127 bits (320), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 109/458 (23%), Positives = 212/458 (46%), Gaps = 26/458 (5%)

Query: 14  FQSWMREGFPVHRGEIFHSINRLRKLQLNKRALEVMEWVIRERPYRPKELDYSYL-LEFT 72
            + W  EG  + +  +   + +LRK +    ALEV +W+   + + P++LD   L ++  
Sbjct: 98  LKEWEEEGNVLDKEMLRAIMLKLRKWKRGSLALEVADWMYYTKQF-PQDLDDVILRMDMA 156

Query: 73  IKNHGISQGEKLFCCIPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLV 132
           ++   I + +K+F  +    +    YN + +    + +I  + ++  K +      + + 
Sbjct: 157 VRAKKIRRAQKIFKKLQAWEKTTDAYNTMFLIFSQRKMILHADDFYYKFKEAKLKPNDIT 216

Query: 133 FNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVY---- 188
           F+ L  L    G    +  +   ++A  + P V   + LM  +   H I    +++    
Sbjct: 217 FSILACLYRRCGLHNKVVRLQEDIEAAGMKPCVCFLNNLMVSKYELHGISSAEEIFNQLV 276

Query: 189 ---SDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNW----STLDVL 241
              SD+KRS +     +Y ++A ++  A ++  A+  +E +EK+M   ++     T  +L
Sbjct: 277 PAGSDLKRSHLS----TYSMMAASYLSAGMHDKAQNLLEVIEKAMDQGSFPKLRRTYHIL 332

Query: 242 IILYGYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQL 301
           I +Y  +     +ER+W  +++L   +++ YV  IE+ GR  +V  AE+ + E      L
Sbjct: 333 ISMYSTMKNRDGMERVWKKIEDL---KAQDYVAMIESCGRADEVGSAEKYFKEADRKGLL 389

Query: 302 KATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKA 361
                + +++ VY   G  DKA  L K+M       +A+ Y ++ L    +  ++   + 
Sbjct: 390 NQPSLFAALLGVYAGKGQADKAEKLFKKMKEQDVSRDALCYHYIILANLNAKNIDRAVEI 449

Query: 362 LELGMKLITTKKVRSSTPWLETTLSIIEIFA-EKGDVGNAENLFEELKKANYTKYTFVYN 420
           LEL        +   S P+L T   +++  A E GDV  AE L  + +K  Y     VYN
Sbjct: 450 LELAE--AAGMRDGRSRPFLGTFCDVLKTIAKETGDVALAETLLADWRKGKYRTDIAVYN 507

Query: 421 TLIKAYVKA--KINDPNLLRRMILGGARPDAETYSLLK 456
            L++ Y+KA  ++  P  L+R+     +P  ET+ LL+
Sbjct: 508 HLLRVYLKAGKQVQGP-FLKRLAGNNMKPTRETHQLLQ 544



 Score =  112 bits (280), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 112/470 (23%), Positives = 211/470 (44%), Gaps = 32/470 (6%)

Query: 1    IERLPRGEPVGSAFQSWMRE-GFPVHRGEIFHSINRLRKLQLNKRALEVMEWVI--RERP 57
            ++R+ RG         W+R     V + E  + + RLRK +  K ALE+ +W+   R RP
Sbjct: 678  VQRIVRG---------WLRSRDVEVGKHEFVYVMRRLRKRKRVKHALEIADWMALSRPRP 728

Query: 58   YRPKELDYSYLLEFTIKNHGISQGEKLFCCIPKDYQNELLYNNLVIACLDKGVIKLSLEY 117
            +     D  + ++   +   + + E++F  +  ++++E+ YN L+++   K     +   
Sbjct: 729  FTLTTKDNIFRMDLASRCGSVGKAERIFERLAPEHRSEVAYNALLLSYTKKKKRGRAERL 788

Query: 118  MKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEAN 177
             K+++  G   S    N L  +    G    +  + ++ +   V   +  +++L+  +  
Sbjct: 789  FKELKATGTISSCYSLNLLASMYRQLGLDAEVLMLAKEAQKLGVELDMCFYNLLLPAKFR 848

Query: 178  DHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVA---ETYVEALEKSMTGNN 234
               +E + K+Y+ +      P + +     T  A+A +Y  A   +  +E LE    G  
Sbjct: 849  VQGLEEVEKLYATI----TSPRDRTRFF--TCLAMANIYVSAGRNDKVLEMLELIDQGME 902

Query: 235  WSTL-------DVLIILYGYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSR 287
              T+       +VLI +Y  L  G  +ER W  +++     ++ Y   I A+G++  V R
Sbjct: 903  AGTIVKQRRRYNVLISMYASLEDGARVERTWERLKQQRQPNTEDYCCIIRAWGKLGHVVR 962

Query: 288  AEELWLEMQS-VKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMN-GCKPNAITYRHL 345
            AE ++   ++  K LK +  +N+++ VY   G  ++A GL++ M    G K +   Y HL
Sbjct: 963  AETIFQVAEANEKSLKYSTVFNAMMFVYSVAGMREEAEGLVQRMEYELGVKLDPWCYHHL 1022

Query: 346  ALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFE 405
             L   K+  + +    L         KK R  TP   T  + +   A+ GDV  AE    
Sbjct: 1023 VLLYAKAGDIGKMLSTLRAAQ--AGGKKERRFTPLAATLWAALNTLADAGDVDTAEETLT 1080

Query: 406  ELKKANYTKYTFVYNTLIKAYVKAKINDPNLLRRMILGGARPDAETYSLL 455
              K++ Y   T +YN L++A++ A       + RM++ G  P+ ET  L 
Sbjct: 1081 RWKRSGYRVTTGLYNRLLRAHLVAARPTERFVERMLVDGVVPNGETEKLF 1130


>gi|357110627|ref|XP_003557118.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g60770-like [Brachypodium distachyon]
          Length = 536

 Score =  126 bits (316), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 116/481 (24%), Positives = 202/481 (41%), Gaps = 65/481 (13%)

Query: 20  EGFPVHRGEIFH-----SINRLRKLQLNKRALEVMEWVIRERPYRPKELDYSYLLEFTIK 74
           +GF   R   F       + RLR+ +L + AL++ E V+  R   P   D +  L+   K
Sbjct: 40  DGFLDSRKRAFKWEVGVCVRRLRRQELYRPALKLTE-VMARRGMNPTVGDQAIRLDLVAK 98

Query: 75  NHGISQGEKLFCCIPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFN 134
           + GI+  EK F  +P+  +  L Y  L+     + + + +   M+KM+ L  + + + +N
Sbjct: 99  SRGIAAAEKYFMDLPETSKTHLTYGALLNCYCKESMTEKAEALMEKMKELNFAFTAMSYN 158

Query: 135 RLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRS 194
            L+ L +   + + +P+I++ MKAD V P V T+++ M+  A   +I G+ +V  +MKR 
Sbjct: 159 SLMTLYTKVNQPEKVPSIIQDMKADDVLPDVYTYNVWMRSLAARQDISGVERVIEEMKRD 218

Query: 195 -EVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKD 253
             V P+  +Y  LA+ +  A L+  AE  ++ LEK  T N+      LI LYG      +
Sbjct: 219 GRVVPDWTTYSNLASIYVEAGLFEKAEAALKELEKRNTSNDLEAYQFLITLYGRTQNLVE 278

Query: 254 LERIWATVQE-LPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSV-------------- 298
           +  +W +++   P   + SY+  I+    +  +  AE  + E ++               
Sbjct: 279 VHHVWRSLKRNNPRKANMSYLNMIQVLANLKDLPAAEACFKEWEARYIRPPKTKAIDAVT 338

Query: 299 -------------------KQLKATEQ-----------------YNSVISVYCKNGFIDK 322
                                 K TE                   N+++  Y   G +DK
Sbjct: 339 TETSKLDQESSTTNASNNDSDAKGTEDKGMEEIDMKHPKYDIRVANALMKAYVTEGMLDK 398

Query: 323 ASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWL- 381
           A  L K   M G + N+ T+        K   ++      +  +K    K   S   W+ 
Sbjct: 399 AVALKKRAKMRGGRLNSKTWEIFMEHYIKVGDLKNAHWCTDRAIK----KGHSSGRIWVP 454

Query: 382 --ETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKINDPNLLRR 439
             + T +++  F +K DV  AE   E LKK      T V+  L++ Y  A    P +  R
Sbjct: 455 PRDVTETLMGYFEKKKDVDGAEKFVEVLKKVQKDLGTVVFEPLVRTYAAAGKKFPGMRHR 514

Query: 440 M 440
           +
Sbjct: 515 L 515


>gi|225468646|ref|XP_002267979.1| PREDICTED: pentatricopeptide repeat-containing protein At1g60770
           [Vitis vinifera]
          Length = 489

 Score =  124 bits (312), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 107/422 (25%), Positives = 199/422 (47%), Gaps = 10/422 (2%)

Query: 24  VHRGEIFHSINRLRKLQLNKRALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQGEK 83
           V + E+  ++ +LR  +    AL++ E  + +R       D +  L+   K  G++  E 
Sbjct: 52  VFKWEVGDTVKKLRDRKRFYPALKLSE-TMAKRGMNMTISDQAIYLDLITKTRGVAAAEN 110

Query: 84  LFCCIPKDYQNELLYNNLVIACLDKGVIKLSLE-YMKKMRVLGHSISYLVFNRLIILNSS 142
            F  +P+  +N L Y  L + C  K ++    E  M++M+ L   +S + +N L+ L + 
Sbjct: 111 YFIDLPETSKNHLTYGAL-LNCYCKELLTEKAEALMERMKELKLGLSSMPYNSLMTLYTK 169

Query: 143 PGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRS-EVEPNEV 201
            G+ + IP I++++K+  + P   T++I M+  A  ++I G+ +V  +MKR   V  +  
Sbjct: 170 IGQPEKIPTIIQELKSLDIMPDSYTYNIWMRALAAVNDISGVERVIEEMKRDGRVASDWT 229

Query: 202 SYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATV 261
           +Y  LA+ +  A ++  AE  ++ LEK     + +    LI LYG +    ++ R+W ++
Sbjct: 230 TYSNLASIYVDAGVFEKAEKALKELEKRNACRDLTAFQFLITLYGRIGNLLEVYRVWRSL 289

Query: 262 Q-ELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFI 320
           +   P   + SY+  I+    +  +  AE+ + E +S   +      N++I  Y K+G +
Sbjct: 290 RLAFPKTANVSYLNMIQVLVNLKDLPGAEKCFREWESGCSIYDIRVANALIGAYAKDGLL 349

Query: 321 DKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSS--T 378
           +KA  L +     G KPNA T+        K+    E  +A++     I+T +       
Sbjct: 350 EKAEELKEHARRRGAKPNAKTWEIFLAYHLKNR---EMKQAVDCVANAISTGRGDGQKWV 406

Query: 379 PWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKINDPNLLR 438
           P  E     ++ F ++ DV  AE   E LK         V+ +LI+ Y  A    P + R
Sbjct: 407 PSPEIIGVFMQHFEQEKDVDGAEGFLEILKSTVEDLGVEVFESLIRIYAAAGRTSPVMRR 466

Query: 439 RM 440
           R+
Sbjct: 467 RL 468


>gi|449434959|ref|XP_004135263.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g60770-like [Cucumis sativus]
 gi|449478594|ref|XP_004155363.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At1g60770-like [Cucumis sativus]
          Length = 489

 Score =  124 bits (310), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 109/424 (25%), Positives = 199/424 (46%), Gaps = 17/424 (4%)

Query: 24  VHRGEIFHSINRLRKLQLNKRALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQGEK 83
           V + E+  ++ +LR  +L   AL++ E ++ +R       D +  L+   K  GI   E 
Sbjct: 55  VFKWEVGDTLRKLRDRKLYYPALKLSE-IMAKRGMNKTVSDQAIHLDLVAKARGIDAAEN 113

Query: 84  LFCCIPKDYQNELLYNNLVIACLDKGVIKLSLEYM-KKMRVLGHSISYLVFNRLIILNSS 142
            F  +P+  +N L Y++L + C  K ++    E + +K++ L   ++ + +N L+ L S 
Sbjct: 114 YFVSLPESSKNHLSYSSL-LNCYCKELLTEKAEALFEKIKELNLPVTPVPYNSLMTLYSK 172

Query: 143 PGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVS 202
            GR   +  I+++MKA  V     T+ + M+  A  ++I G+ +V  +MKR  V+ +  +
Sbjct: 173 IGRPDKVCTIIQEMKAANVTFDPYTYIVWMRALAALNDISGVERVIDEMKRDGVKGDWTT 232

Query: 203 YCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQ 262
           Y  LA+ +  A ++  A   ++ LEK  T  +      LI LYG +    ++ R+W +++
Sbjct: 233 YSNLASIYVNANMFEKAAKALKDLEKINTRRDLIGFQFLITLYGQIGDLTEVYRVWRSLR 292

Query: 263 -ELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFID 321
              P   + SY+  I+   ++  +  AE+ + E +S          N++I  Y K G ++
Sbjct: 293 LAFPRTANISYLNMIQTLTKLKDLPGAEKCFKEWESGSPTYDIRIPNALIGAYTKGGLLE 352

Query: 322 KASGLLKEMSMNGCKPNAITYR-----HLALGCFKSNLVEEGFKALELGMKLITTKKVRS 376
           KA  L +     G +PNA T+      +L  G FK         A +   K I       
Sbjct: 353 KAMALKERALRRGARPNAKTWEFFLNYYLKNGDFKL--------AGDCVAKAIGKGDRGK 404

Query: 377 STPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKINDPNL 436
             P  E   S +  F ++ DV  AE+  E +KK   +  + V+ +LI+ Y  A     ++
Sbjct: 405 WIPSPEIIKSFMSHFEQEKDVDGAESFLEIVKKTVDSLESEVFESLIRTYSAAGRTSSSM 464

Query: 437 LRRM 440
            RR+
Sbjct: 465 SRRL 468


>gi|147819856|emb|CAN71816.1| hypothetical protein VITISV_023421 [Vitis vinifera]
          Length = 494

 Score =  124 bits (310), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 102/451 (22%), Positives = 209/451 (46%), Gaps = 10/451 (2%)

Query: 10  VGSAFQSWMREGFPVHRGEIFHSINRLRKLQLNKRALEVMEWVIRERPYRPKELDYSYLL 69
           V      W++EG  V R ++   +N+LR+ +  K A ++ EW+ + +       D +  +
Sbjct: 45  VAETLDKWVKEGKSVKRFDMISCVNQLRRFKKYKHAAQIYEWMEKSKN-DLNNADRAIRI 103

Query: 70  EFTIKNHGISQGEKLFCCIPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSIS 129
           +   K  GI+Q E  F  + +  +    Y  L+     + ++  ++E  KK++ L    S
Sbjct: 104 DLLAKTEGIAQAENYFNSLQESAKTNKTYGALLNCYCKENMVDKAVELFKKLKELNFVSS 163

Query: 130 YLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYS 189
            L +N +I L    G+ + +P+++ +M+   +   + T+++LM   A+  + E + +V  
Sbjct: 164 ALSYNNMISLYLRVGQPEKVPSLVHEMEEKDIPADLYTYNLLMNSYASVKDFEAVEQVLE 223

Query: 190 DMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLA 249
            MK+  VE +  +Y  LA  +  A     A   ++ LE++   ++     +LI LY   +
Sbjct: 224 KMKKRGVERDWFTYGNLANIYVDAGHTKKANYALQKLEQNKNLHDPEAFRMLINLYARTS 283

Query: 250 KGKDLERIWATVQ-ELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYN 308
             + + R W +++   P + +KSY++ + A  ++  V+  E+ + E +S          N
Sbjct: 284 NLEGVNRAWESLKLAHPKINNKSYLIMLLALSKLGDVAGLEKCFKEWESGCSTYDVRLSN 343

Query: 309 SVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKL 368
            ++  Y     I++A+ L + ++  G +    T         K + ++   K L++G   
Sbjct: 344 VMLESYLNREMIEEANLLSESIAKRGPELKLKTLDLFMKFYLKKHQLDLAMKYLDMG--- 400

Query: 369 ITTKKVRSSTPWL---ETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKA 425
             +K    +  W    ET    +E F E  DV +AE   E ++K +    + +Y++L++ 
Sbjct: 401 -ASKADPENNKWFPTEETITMFLEYFEEVKDVDSAEKFCETMRKISRLD-SKIYDSLLRT 458

Query: 426 YVKAKINDPNLLRRMILGGARPDAETYSLLK 456
           Y+ A   +P +  RM   G    +ET  LL+
Sbjct: 459 YIAAGKEEPLMSERMKDDGIEISSETEKLLQ 489


>gi|255553771|ref|XP_002517926.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223542908|gb|EEF44444.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 504

 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 105/402 (26%), Positives = 191/402 (47%), Gaps = 15/402 (3%)

Query: 14  FQSWMREGFPVHRGEIFHSINRLRKLQLNKRALEVMEWVIRERPYRPKELDYSYLLEFTI 73
            + W+ EG  V + E+   + +LRK +    AL+V EW+  ++       D +  L+   
Sbjct: 59  LEKWLEEGNDVKKPELQKFVKQLRKYRRFTHALQVSEWMTDKKGCSLLPGDVAVRLDLIS 118

Query: 74  KNHGISQGEKLFCCIPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVF 133
           K HG+ + E+ F  IP   ++  +Y  L+  C    ++  +   M+KM+ LG   + L +
Sbjct: 119 KVHGLVKAEEYFNSIPDTSRDRQVYGALLNCCAHSKLLGKAEATMQKMKDLGFVKNSLSY 178

Query: 134 NRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKR 193
           N ++ L S  G  + +  ++++M+ + ++    T+ I +    N  +IEG+ K+   M  
Sbjct: 179 NVMLSLYSHMGNYEKLDPLVQEMEENGISCDRITYCIRLNACVNSSDIEGMEKLLMKM-- 236

Query: 194 SEVEPNEV----SYCILATAHAVARLYTVAETYVEALEKSMTGNNWS-TLDVLIILYGYL 248
            EV+PN      +Y I A  +  A L       ++  E+ ++GN      + L+ LY   
Sbjct: 237 -EVDPNISVGFHAYVIAANGYLKAGLVDKTLIMLKRSEQLISGNTRRFAYEFLLTLYTAS 295

Query: 249 AKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYN 308
               ++ RIW   +E+    +  Y+  I +  ++  +  AE ++ E  S K L      N
Sbjct: 296 GNKAEVYRIWNKYKEIGRFFNSGYICMISSLLKLDDIDGAERIFEEWDSKKVLFDIRIPN 355

Query: 309 SVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKL 368
           S+++VY + G ++KA   + ++  +G +P+A ++ HLA G   S  +    KA+E   K 
Sbjct: 356 SMVNVYSRKGHLEKAETYINKIVASGEEPDATSWNHLAAGYHSSGQMT---KAVETIRKA 412

Query: 369 ITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKA 410
           I+  K     P L T  + +E    +GD   AE L E LK A
Sbjct: 413 ISVSK-PGWKPSLLTLSACLEFLKGQGD---AETLEELLKIA 450


>gi|225450579|ref|XP_002277733.1| PREDICTED: pentatricopeptide repeat-containing protein At1g02370,
           mitochondrial [Vitis vinifera]
 gi|296089781|emb|CBI39600.3| unnamed protein product [Vitis vinifera]
          Length = 498

 Score =  122 bits (307), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 102/451 (22%), Positives = 209/451 (46%), Gaps = 10/451 (2%)

Query: 10  VGSAFQSWMREGFPVHRGEIFHSINRLRKLQLNKRALEVMEWVIRERPYRPKELDYSYLL 69
           V      W++EG  V R ++   +N+LR+ +  K A ++ EW+ + +       D +  +
Sbjct: 49  VAETLDKWVKEGKSVKRFDMISCVNQLRRFKKYKHAAQIYEWMEKSKN-DLNNADRAIRI 107

Query: 70  EFTIKNHGISQGEKLFCCIPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSIS 129
           +   K  GI+Q E  F  + +  +    Y  L+     + ++  ++E  KK++ L    S
Sbjct: 108 DLLAKTEGIAQAENYFNSLQESAKTNKTYGALLNCYCKENMLDKAVELFKKLKELNFVSS 167

Query: 130 YLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYS 189
            L +N +I L    G+ + +P+++ +M+   +   + T+++LM   A+  + E + +V  
Sbjct: 168 ALSYNNMISLYLRVGQPEKVPSLVHEMEEKDIPADLYTYNLLMNSYASVKDFEAVEQVLD 227

Query: 190 DMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLA 249
            MK+  VE +  +Y  LA  +  A     A   ++ LE++   ++     +LI LY   +
Sbjct: 228 KMKKRGVERDWFTYGNLANIYVDAGHTKKANYALQKLEQNKNLHDPEAFRMLINLYARTS 287

Query: 250 KGKDLERIWATVQ-ELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYN 308
             + + R W +++   P + +KSY++ + A  ++  V+  E+ + E +S          N
Sbjct: 288 NLEGVNRAWESLKLAHPKINNKSYLIMLLALSKLGDVAGLEKCFKEWESGCSTYDVRLSN 347

Query: 309 SVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKL 368
            ++  Y     I++A+ L + ++  G +    T         K + ++   K L++G   
Sbjct: 348 VMLESYLNREIIEEANLLSESIAKRGPELKLKTLDLFMKFYLKKHQLDLAMKYLDMG--- 404

Query: 369 ITTKKVRSSTPWL---ETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKA 425
             +K    +  W    ET    +E F E  DV +AE   E ++K +    + +Y++L++ 
Sbjct: 405 -ASKADPENNKWFPTEETITMFLEYFEEVKDVDSAEKFCETMRKISRLD-SKIYDSLLRT 462

Query: 426 YVKAKINDPNLLRRMILGGARPDAETYSLLK 456
           Y+ A   +P +  RM   G    +ET  LL+
Sbjct: 463 YIAAGKEEPLMSERMKDDGIEISSETEKLLQ 493


>gi|302753488|ref|XP_002960168.1| hypothetical protein SELMODRAFT_402234 [Selaginella moellendorffii]
 gi|300171107|gb|EFJ37707.1| hypothetical protein SELMODRAFT_402234 [Selaginella moellendorffii]
          Length = 585

 Score =  122 bits (306), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 104/402 (25%), Positives = 189/402 (47%), Gaps = 19/402 (4%)

Query: 64  DYSYLLEFTIKNH-GISQGEKLFCCIPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMR 122
           D  Y+L+     H  +   E  F  +P D + E  YN ++   +   +++ ++  M K+R
Sbjct: 116 DRDYVLQVDYYAHVDMYLAEMAFNRLPDDKKTEEAYNYILAGFVRNRMLEKAVVVMDKIR 175

Query: 123 VLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVA--PHVSTFHILMKIEAND-H 179
            LG  +S     ++ +L    G  + IP ++ + ++  +   PH    H+ +K    D  
Sbjct: 176 ELG-LVSAFSLEQMTLLFHYLGLERRIPALVVEARSLGLHFHPHFLNTHLWIKRRHGDLS 234

Query: 180 NIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWS--- 236
            +E +++    M RS    N  +Y  +A+A+  A L   A   + A E  +    +    
Sbjct: 235 GMEEIVEELELMGRS----NAWTYIFIASAYIQAGLPEKAHAALGAAEAGIRNGRFKKQR 290

Query: 237 -TLDVLIILYGYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEM 295
              + +++LYG L   + +ER+W  +   P V   +++  IEA G    + RAEE++ E+
Sbjct: 291 KVYNKILLLYGLLKDTEGIERVWGILNSRPLVAVHNHLFMIEALGSAGNIGRAEEIFEEL 350

Query: 296 QSVKQL-KATEQYNSVISVYCKNGFIDKASGLLKEMSMN-GCKPNAITYRHLALGCFKSN 353
           +  + + K   Q+  +   Y KNG +DKA+ +L +       +P    Y +   G  K N
Sbjct: 351 RKCRGVRKEYRQFIVMAGAYTKNGLMDKATEVLYDYPAKYKARPVPELYHYFIKGYIKRN 410

Query: 354 LVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYT 413
             +   +A E G  L+   + RS+  W ET L ++ I+AE+GDV +A  +F+  K   + 
Sbjct: 411 EKDWAIEAYEEGQSLV---RYRSTKLWYETMLEVMSIYAERGDVTSALAMFKHCKACKHR 467

Query: 414 KYTFVYNTLIKAYVKAKINDPNLLRRMILGGARPDAETYSLL 455
               ++  L K YV AK     L++RM++ G  P+ E   L+
Sbjct: 468 DIR-MFTLLFKTYVVAKEPAHGLIKRMVMLGFEPNDEIRELI 508


>gi|255562320|ref|XP_002522167.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223538605|gb|EEF40208.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 342

 Score =  122 bits (305), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 85/348 (24%), Positives = 171/348 (49%), Gaps = 19/348 (5%)

Query: 121 MRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHN 180
           M+ L   ++    N+L++L     ++K I ++L  M+ + + P + T+ +L+  +   ++
Sbjct: 1   MKDLEFPVTTFACNQLLLLYKRLDKKK-IADVLLLMEKENIKPSLFTYKLLIDTKGQSND 59

Query: 181 IEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNN-----W 235
           + G+ ++   MK   +EP+     ILA  +A   L   AE    A+ K M G N     W
Sbjct: 60  LTGMDQIVETMKADGIEPDINIRAILAKHYASGGLKEKAE----AILKEMEGGNLEEHRW 115

Query: 236 STLDVLIILYGYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEM 295
           +   +L+ LY  L K  ++ER+W   +  P +  +  V  IEA+G++ ++ +AEE++  M
Sbjct: 116 AC-RLLLPLYAALGKADEVERVWKVCESSPQL--EECVAVIEAWGKLKKIDKAEEVFNRM 172

Query: 296 QSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLV 355
            +  +  ++  Y++++ VY  +  +     L+K+M+ +GC+   +T+  L     ++  V
Sbjct: 173 LTTWKKLSSRHYSALLKVYASHKMLANGKDLIKKMADSGCRIGPLTWDSLVKLYVEAGEV 232

Query: 356 EEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKY 415
           E+    L    +    K      P   + + I++ +A++GDV NAE +F  +++A Y   
Sbjct: 233 EKADSVLHKAAQQNHMK------PMFSSYIVIMDQYAKRGDVHNAEKMFHRMRQAGYVAR 286

Query: 416 TFVYNTLIKAYVKAKINDPNLLRRMILGGARPDAETYSLLKLAEQFQK 463
              +  L++ Y+ AK     +  RM      P+    + L L + F+K
Sbjct: 287 LRQFQALVQTYINAKAPAYGIRERMKADNIFPNKALAAQLALVDAFRK 334


>gi|302804432|ref|XP_002983968.1| hypothetical protein SELMODRAFT_423071 [Selaginella moellendorffii]
 gi|300148320|gb|EFJ14980.1| hypothetical protein SELMODRAFT_423071 [Selaginella moellendorffii]
          Length = 598

 Score =  120 bits (302), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 100/402 (24%), Positives = 185/402 (46%), Gaps = 19/402 (4%)

Query: 64  DYSYLLEFTIKNH-GISQGEKLFCCIPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMR 122
           D  Y+L+     H  +   E  F  +P D + E  YN ++   +   +++ ++  M K+R
Sbjct: 129 DRDYVLQVDYYAHVDMYLAEMAFNRLPDDKKTEEAYNYILAGYVRNRMLEKAVVVMDKIR 188

Query: 123 VLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVA--PHVSTFHILMKIEAND-H 179
            LG  +S     ++ +L    G  + IP ++ + ++  +   PH    H+ +K    D  
Sbjct: 189 ELG-LVSAFSLEQMTLLFHYLGLERRIPALVVEARSLGLHFHPHFLNTHLWIKRRHGDLS 247

Query: 180 NIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVA----RLYTVAETYVEALEKSMTGNNW 235
            +E +++    M RS    N  +Y  +A+A+  A    + +         +         
Sbjct: 248 GMEEIVEELELMGRS----NAWTYIFIASAYIQAGFPEKAHAALGAAEAGIRNGRFKKQR 303

Query: 236 STLDVLIILYGYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEM 295
              + +++LYG L   + +ER+W  +   P V   +++  IEA G    + RAEE++ E+
Sbjct: 304 KVYNKILLLYGLLKDMEGIERVWGILNSRPLVAVHNHLFMIEALGSAGNIGRAEEIFEEL 363

Query: 296 QSVKQL-KATEQYNSVISVYCKNGFIDKASGLLKEMSMN-GCKPNAITYRHLALGCFKSN 353
           +  + + K   Q+  +   Y KNG +DKA+ +L +       +P    Y +   G  K N
Sbjct: 364 RKCRGVRKEYRQFIVMAGAYTKNGLMDKATEVLYDYPAKYKARPVPELYHYFIKGYIKRN 423

Query: 354 LVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYT 413
             +   +A E G  L+   + RS+  W ET L ++ I+AE+GDV +A  +F+  K   + 
Sbjct: 424 EKDWAIEAYEEGQSLV---RYRSTKLWYETMLEVMSIYAERGDVTSALAMFKHCKACKHR 480

Query: 414 KYTFVYNTLIKAYVKAKINDPNLLRRMILGGARPDAETYSLL 455
               ++  L K YV AK     L++RM++ G  P+ E   L+
Sbjct: 481 DIR-MFTLLFKTYVVAKEPAHGLIKRMVMLGFEPNDEIRELI 521


>gi|302798903|ref|XP_002981211.1| hypothetical protein SELMODRAFT_420692 [Selaginella moellendorffii]
 gi|300151265|gb|EFJ17912.1| hypothetical protein SELMODRAFT_420692 [Selaginella moellendorffii]
          Length = 816

 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 100/452 (22%), Positives = 205/452 (45%), Gaps = 50/452 (11%)

Query: 15  QSWMREGFPVHRGEIFHSINRLRKLQLNKRALEVMEWVIRERPYRPKELDYSYLLEFTIK 74
            +W+  G  V +  +    ++L  ++   RAL+++ W++ ++P+     DY+  ++ T +
Sbjct: 119 HAWISRGNLVSKEALISICHKLCYIRRQIRALQIINWIVDDKPFTVTPRDYALQIKLTCR 178

Query: 75  NHGISQGEKLFCCIPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFN 134
                + E+++  +P + + E +   L IA + +  + L  E                ++
Sbjct: 179 YASPIKAERIYDRVPAELKTEEVSTAL-IASMSRSNVMLKAE---------------AWH 222

Query: 135 RLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRS 194
             + LN++                           +++ +  N H    ++++Y D+  S
Sbjct: 223 TALKLNNA---------------------RACNVMMILFLRRNRHR--EVLQLYQDLVAS 259

Query: 195 EVEPNEVSYCILATAH----AVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAK 250
             +PN ++Y +L        A+  L   AE  ++ ++        +T   ++++Y YL K
Sbjct: 260 GGQPNPLTYLLLFKYRNRIGAIDGLEEAAEAALKKIDVHDEKVRNATRSDMMVVYAYLGK 319

Query: 251 GKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSV 310
              +E++W+ + +     +  +V AI AFG + ++SRAE++  ++   ++    + Y ++
Sbjct: 320 PDMVEKLWSMIHKESWTLAGRFVAAINAFGILGKISRAEDVLNQVLKTRKKAIQKPYCAM 379

Query: 311 ISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLIT 370
           I VY K+G ++KA   +K++ +    P    + HL  G    +  E+  + L  GM+ + 
Sbjct: 380 IGVYAKHGMMEKAELTMKKLRLELSFPWFAPFNHLVSGYLARDEPEKALEKLREGMEYVV 439

Query: 371 TKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAK 430
            K++    P  E  L ++ +FA K DV  AE L          K   +YN L+K YV+AK
Sbjct: 440 DKRIE---PDYEMVLGMMPVFASKRDVEGAEKLMSLFGLYGDAK---LYNALLKVYVEAK 493

Query: 431 IN-DPNLLRRMILGGARPDAETYSLLKLAEQF 461
           ++  P  L RM       D ET  LL+ + +F
Sbjct: 494 VSPGPFFLGRMARNKVSGDDETKRLLEGSSEF 525


>gi|297848282|ref|XP_002892022.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297337864|gb|EFH68281.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 523

 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 96/409 (23%), Positives = 185/409 (45%), Gaps = 12/409 (2%)

Query: 10  VGSAFQSWMREGFPVHRGEIFHSINRLRKLQLNKRALEVMEWVI-RERPYRPKELDYSYL 68
             S    W + G  + + E+   +  LRK +   +ALEV +W+  R   +R    D +  
Sbjct: 82  AASVLNQWEKGGRKLTKWELCRVVKELRKYKRPNQALEVYDWMNNRGERFRLSASDAAIQ 141

Query: 69  LEFTIKNHGISQGEKLFCCIPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSI 128
           L+   K  GIS  E+ F  +P+++++  +Y +L+ A +     + +   +  MR  G+++
Sbjct: 142 LDLIGKVRGISDAEQFFLTLPENFKDRRVYGSLLNAYVRAKSREKAEALLHTMRDKGYAL 201

Query: 129 SYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVY 188
             L FN ++ L  +      +  ++ +MK   +   + +++I +    +  ++E +  VY
Sbjct: 202 HPLPFNVMMTLYMNLREYDKVDAMVFEMKQKDIRLDIYSYNIWLSSCGSLGSVEKMELVY 261

Query: 189 SDMKRS-EVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGY 247
             MK    + PN  ++  +AT +        AE  +  +E  +TG N      L+ LYG 
Sbjct: 262 QQMKSDVSINPNWTTFSTMATMYIKMGETEKAEDALRKVEARITGRNRIPYHYLLSLYGS 321

Query: 248 LAKGKDLERIWATVQEL-PNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQ 306
           +   K+L R+W   + + P++ +  Y   + +  R+  +  AE+++ E   VK       
Sbjct: 322 VGNKKELYRVWNVYKSVVPSIPNLGYHALVSSLARMGDIEGAEKVYEEWLPVKSSYDPRI 381

Query: 307 YNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGM 366
            N +++VY KN  ++KA GL   M   G KP++ T+  LA G  +   + E    L    
Sbjct: 382 PNLLMNVYVKNDQLEKAEGLFDHMVEMGGKPSSSTWEILADGHTRKRCIPEALTCLRKAF 441

Query: 367 KLITTKKVRSSTPWLETTLSIIEIFA---EKGDVGNAENLFEELKKANY 412
                     S+ W    L +   F    E+ DV + E + E L+++ +
Sbjct: 442 ------SAEGSSNWRPKVLMLSGFFKLCEEESDVTSKEAVLELLRQSGH 484



 Score = 39.7 bits (91), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 48/191 (25%), Positives = 84/191 (43%), Gaps = 16/191 (8%)

Query: 271 SYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKAT-EQYNSVISVYCKNGFIDKASGLLKE 329
           SY + + + G +  V + E ++ +M+S   +      ++++ ++Y K G  +KA   L++
Sbjct: 240 SYNIWLSSCGSLGSVEKMELVYQQMKSDVSINPNWTTFSTMATMYIKMGETEKAEDALRK 299

Query: 330 MSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIE 389
           +       N I Y +L L  + S     G K  EL       K V  S P L    +++ 
Sbjct: 300 VEARITGRNRIPYHYL-LSLYGS----VGNKK-ELYRVWNVYKSVVPSIPNLGYH-ALVS 352

Query: 390 IFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKINDP-----NLLRRMILGG 444
             A  GD+  AE ++EE      +    + N L+  YVK   ND       L   M+  G
Sbjct: 353 SLARMGDIEGAEKVYEEWLPVKSSYDPRIPNLLMNVYVK---NDQLEKAEGLFDHMVEMG 409

Query: 445 ARPDAETYSLL 455
            +P + T+ +L
Sbjct: 410 GKPSSSTWEIL 420


>gi|225446335|ref|XP_002273904.1| PREDICTED: pentatricopeptide repeat-containing protein At2g20710,
           mitochondrial [Vitis vinifera]
          Length = 499

 Score =  119 bits (298), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 107/454 (23%), Positives = 212/454 (46%), Gaps = 17/454 (3%)

Query: 13  AFQSWMREGFPVHRGEIFHSINRLRKLQLNKRALEVMEWVIRERPYRPKELDYSYLLEFT 72
           A + W +EG  + + ++   I +LR  +    ALE+ EW+  +  +     D +  L+  
Sbjct: 54  ALEQWRKEGRSIKQQDLHRLIRKLRTFKRYNHALEIYEWIRDKFYFDISPGDVAIQLDLI 113

Query: 73  IKNHGISQGEKLFCCIPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLV 132
            K HG+ Q EK F   P   ++  +Y  L+     K  ++ +   M++MR +G  +  L 
Sbjct: 114 SKVHGLEQAEKYFNETPNSLRSFQVYGALLNCYSQKKSLEKAEAIMQEMRDMGF-VKTLS 172

Query: 133 FNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEG----LMKVY 188
           +N ++ L S  G+ + + N++++M+ + +     T+ I +       ++EG    LMK+ 
Sbjct: 173 YNVMLGLYSRLGKHEKLDNLMQEMEENGIGLDSFTYCIRLNAYCATSDMEGMEKLLMKLE 232

Query: 189 SDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWS-TLDVLIILYGY 247
           +D     V  +  +Y + A  +  A L   A   ++  E+ ++G +     ++L+ LY  
Sbjct: 233 TD---PAVNSDWNAYIVAANGYLKADLKEKAVEMLKKSEQFISGRSRRFGYEILLTLYAT 289

Query: 248 LAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQY 307
           +    ++ RIW   + +    +  YV  + +  ++  +  AE+ + E  S  +       
Sbjct: 290 MGNKTEVYRIWNLYKTIGKFFNTGYVAMVSSLLKLDDMDGAEKTFEEWLSGNKFFDFRVP 349

Query: 308 NSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMK 367
           N +I  YCK G ++KA  L+      G +P A+T+  LA G  ++N +E+    L+    
Sbjct: 350 NLLIRAYCKKGLLEKAEQLVSRAIEQGEEPIAVTWDALAAGYHENNQMEKAVDTLKKA-- 407

Query: 368 LITTKKVRSSTPWLETTLS-IIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAY 426
           L+ T +     P    TLS  +E    KGDV  AENL   L++ +     +  + L+  Y
Sbjct: 408 LLATSQGWKPNP---VTLSACLEYLKGKGDVEEAENLIRLLREQSLVS-AYDSDRLVN-Y 462

Query: 427 VKAKINDPNLLRRMILGGARPDAETYSLLKLAEQ 460
           ++++    + + +M+      DAET  ++ L ++
Sbjct: 463 IRSEEPGSSTIAQMLWDHEDLDAETDGVVDLKQE 496


>gi|356526773|ref|XP_003531991.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g60770-like [Glycine max]
          Length = 490

 Score =  119 bits (297), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 113/444 (25%), Positives = 208/444 (46%), Gaps = 22/444 (4%)

Query: 24  VHRGEIFHSINRLRKLQLNKRALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQGEK 83
           V++ E+  ++ +LR  +L + AL++ E + +    +    D++  L+   K  GI+  E 
Sbjct: 53  VYKWEVGDTLKKLRDRKLYQPALKLSETMAKRNMIKTVS-DHAIHLDLLAKARGITAAEN 111

Query: 84  LFCCIPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSP 143
            F  +P+  +N L Y  L+     + + + S   M+KM+ L   +S + +N L+ L +  
Sbjct: 112 YFVSLPEPSKNHLCYGALLNCYCKELMTEKSEGLMEKMKELSLPLSSMPYNSLMTLYTKV 171

Query: 144 GRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKR-SEVEPNEVS 202
           G+ + IP+++++MKA  V     T+++ M+  A  ++I G+ +V+ +MKR  +V  +  +
Sbjct: 172 GQPEKIPSLIQEMKASNVMLDSYTYNVWMRALAAVNDISGVERVHDEMKRGGQVTGDWTT 231

Query: 203 YCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQ 262
           Y  LA+    A L+  AE  ++ LEK     + +    LI LYG      ++ R+W +++
Sbjct: 232 YSNLASIFVDAGLFDKAEVALKELEKRNAFKDLTAYQFLITLYGRTGNLYEVYRVWRSLR 291

Query: 263 -ELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFID 321
              P   + SY+  I+    +  +  AE+ + E +           N +I  Y K   ++
Sbjct: 292 LAFPKTANISYLNMIQVLVNLKDLPGAEKCFREWECGCPTYDIRVANVLIRAYVKLDMLE 351

Query: 322 KASGLLKEMSMNGCKPNAITYR-----HLALGCFKSNLVEEGFKALELGMKLITTKKVRS 376
           KA  L +     G KPNA T       +L  G FK   V+   +A+ +G          +
Sbjct: 352 KAEELKERARRRGAKPNAKTLEIFMDYYLLKGDFKLA-VDYLNEAISMGRG--------N 402

Query: 377 STPWLETTLSIIEI----FAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKIN 432
              W+ ++  II I    F ++ DV  AE   E LKK+  +    V+ +LI+ Y  A   
Sbjct: 403 GEKWVPSS-RIISIMMRHFEQEKDVDGAEEFLEILKKSVESPGVEVFESLIRTYAAAGRI 461

Query: 433 DPNLLRRMILGGARPDAETYSLLK 456
              + RR+ +        T  LL+
Sbjct: 462 SSAMQRRLKMENVEVSEGTQKLLE 485


>gi|302764000|ref|XP_002965421.1| hypothetical protein SELMODRAFT_406783 [Selaginella moellendorffii]
 gi|300166235|gb|EFJ32841.1| hypothetical protein SELMODRAFT_406783 [Selaginella moellendorffii]
          Length = 584

 Score =  118 bits (296), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 110/455 (24%), Positives = 195/455 (42%), Gaps = 41/455 (9%)

Query: 6   RGEPVGSAFQSWMREGFPVHRGEIFHSINRLRKLQLNKRALEVMEWVIRERPYRPKELDY 65
           + E + S    W  EG  +    I   INRL+       ALE++EW+             
Sbjct: 161 KDESMSSVLDKWKEEGKDLTVSMIVTVINRLKNSNRMAHALEMIEWI------------- 207

Query: 66  SYLLEFTIKNHGISQGEKLFCCIPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLG 125
                 T ++ GI+  EKLF  +  + +   +YN L+   +    +K +    ++M   G
Sbjct: 208 ------TARSKGIAAAEKLFEELSAEEKTRPVYNALLTRYVFLHNVKKAEGLFEEMDKAG 261

Query: 126 H-SISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGL 184
             S S    N ++ L    G       +L + K   V P++ T+++++ ++A   ++EG+
Sbjct: 262 FLSQSPFALNLMMKLYKHKGDNAKFQEMLEKAKDVAVEPNIFTYNVMLDLKAKAGDVEGM 321

Query: 185 MKVYSDMK-RSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLII 243
            K++ +MK     +P+  SY  L   +  A L   AE  +  +E        +T + +++
Sbjct: 322 EKIFEEMKLNPNAKPDGTSYFTLCKGYLKAGLTDKAEVSLLRMEVGPFRRTKATFEYMML 381

Query: 244 LYGYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKA 303
            YG L    D+ER+W   + +P     S++    A     +V R + ++  M   K+ K 
Sbjct: 382 AYGQLGLISDVERMWQKCKMVPGDGFNSFLAFQRAMALAGEVQRVDSMFKHMDKWKRSKT 441

Query: 304 TE--QYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKA 361
            +  ++N+++  Y K G   +   L K+M+    +   + +    +   K+         
Sbjct: 442 VDLKRHNNLLLAYYKKGMKCEIKELEKKMNEMDLRVTLVDWEKEPIKMSKA--------- 492

Query: 362 LELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNT 421
                K +  K     T         +E   EK DV  AE+ FE+ K  N  K   V+N 
Sbjct: 493 ----AKAVVRKDKEKET----AARKGLEEAVEKADVKAAESAFEKCKAGNMAKVG-VWNK 543

Query: 422 LIKAYVKAKINDPNLLRRMILGGARPDAETYSLLK 456
           L+KAYV A++     L+RM   G   + ET+SLLK
Sbjct: 544 LLKAYVNAQVPAYGFLQRMKAEGVEANEETHSLLK 578


>gi|15235508|ref|NP_192191.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75213327|sp|Q9SY07.1|PP302_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g02820, mitochondrial; Flags: Precursor
 gi|4263527|gb|AAD15353.1| hypothetical protein [Arabidopsis thaliana]
 gi|7269767|emb|CAB77767.1| hypothetical protein [Arabidopsis thaliana]
 gi|332656833|gb|AEE82233.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 532

 Score =  118 bits (295), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 105/451 (23%), Positives = 201/451 (44%), Gaps = 8/451 (1%)

Query: 13  AFQSWMREGFPVHRGEIFHSINRLRKLQLNKRALEVMEWVIRERPYRPKELDYSYLLEFT 72
             + W  EG  V + E+   +  LRK++  K ALE+ EW++ +   + +  DY+  L+  
Sbjct: 80  TIRKWKEEGHSVRKYELNRIVRELRKIKRYKHALEICEWMVVQEDIKLQAGDYAVHLDLI 139

Query: 73  IKNHGISQGEKLFCCIPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLV 132
            K  G++  EK F  +P   +      +L+ + +   +   +    +KM   G   S L 
Sbjct: 140 SKIRGLNSAEKFFEDMPDQMRGHAACTSLLHSYVQNKLSDKAEALFEKMGECGFLKSCLP 199

Query: 133 FNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMK 192
           +N ++ +  S G+ + +P +++++K  + +P + T+++ +   A+ +++EG  KVY   K
Sbjct: 200 YNHMLSMYISRGQFEKVPVLIKELKI-RTSPDIVTYNLWLTAFASGNDVEGAEKVYLKAK 258

Query: 193 RSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGK 252
             ++ P+ V+Y +L   +A       A   ++ +EK ++  N      LI L+  L    
Sbjct: 259 EEKLNPDWVTYSVLTNLYAKTDNVEKARLALKEMEKLVSKKNRVAYASLISLHANLGDKD 318

Query: 253 DLERIWATVQ-ELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVI 311
            +   W  V+     +    Y+  I A  ++ +  +A+ L+ E +SV         N ++
Sbjct: 319 GVNLTWKKVKSSFKKMNDAEYLSMISAVVKLGEFEQAKGLYDEWESVSGTGDARIPNLIL 378

Query: 312 SVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITT 371
           + Y     +       + +   G  P+  T+  L     K   +E   K L+   K I +
Sbjct: 379 AEYMNRDEVLLGEKFYERIVEKGINPSYSTWEILTWAYLKRKDME---KVLDCFGKAIDS 435

Query: 372 KKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKI 431
             V+  T  +       +   E+G+V  AE L   L+KA Y   T +YN+L++ Y KA  
Sbjct: 436 --VKKWTVNVRLVKGACKELEEQGNVKGAEKLMTLLQKAGYVN-TQLYNSLLRTYAKAGE 492

Query: 432 NDPNLLRRMILGGARPDAETYSLLKLAEQFQ 462
               +  RM       D ET  L++L  Q +
Sbjct: 493 MALIVEERMAKDNVELDEETKELIRLTSQMR 523


>gi|224137116|ref|XP_002327026.1| predicted protein [Populus trichocarpa]
 gi|222835341|gb|EEE73776.1| predicted protein [Populus trichocarpa]
          Length = 539

 Score =  118 bits (295), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 92/407 (22%), Positives = 180/407 (44%), Gaps = 6/407 (1%)

Query: 11  GSAFQSWMREGFPVHRGEIFHSINRLRKLQLNKRALEVMEWVI-RERPYRPKELDYSYLL 69
           GS    W  EG  + + E+   +  LRK +  ++ALEV +W+  R+  +R    D +  L
Sbjct: 86  GSVLNRWENEGKRLTKWELCRVVKELRKYKRYQQALEVYDWMKNRQERFRLSPSDAAIQL 145

Query: 70  EFTIKNHGISQGEKLFCCIPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSIS 129
           +   K  G+S  E  F  +P  +++  +Y  L+ A +   + + +     +MR  G+   
Sbjct: 146 DLIAKVRGVSTAEDFFLSLPNTFKDRRVYGALLNAYVQNRMREKAETLFDEMRDKGYVTH 205

Query: 130 YLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYS 189
            L FN  + L  +      +  ++ +M    +   + +++I +    +  + + + +VY 
Sbjct: 206 ALPFNVTMTLYMNIKEYDKVDLMISEMNEKNIKLDIYSYNIWLSSCGSQGSADKMEQVYE 265

Query: 190 DMKRS-EVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYL 248
            MK    + PN  ++  +AT +     +  AE  +  +E  +TG +      L+ LYG +
Sbjct: 266 QMKSDRSINPNWTTFSTMATMYIKMGQFEKAEDCLRRVESRITGRDRIPYHYLLSLYGNV 325

Query: 249 AKGKDLERIWATVQEL-PNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQY 307
              +++ R+W   + + P++ +  Y   I +  R+  +  AE+++ E  S+K        
Sbjct: 326 GNKEEVYRVWNIYKSIFPSIPNLGYHAIISSLVRLDDIEGAEKIYEEWLSIKTSYDPRIA 385

Query: 308 NSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMK 367
           N  I+ Y   G +D+A      M  +G KPN+ T+  LA G        E    L+   +
Sbjct: 386 NLFIAAYVYQGNLDEAKSFFDHMLEDGGKPNSNTWEILAQGHISERRTSEALSCLK---E 442

Query: 368 LITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTK 414
              T   +S  P      S  ++  E+ D+ N E L   L+++ + K
Sbjct: 443 AFVTPGSKSWKPNPANVTSFFKLCEEEADMANKEALEGFLRQSGHLK 489


>gi|17064738|gb|AAL32523.1| Unknown protein [Arabidopsis thaliana]
 gi|27311917|gb|AAO00924.1| Unknown protein [Arabidopsis thaliana]
          Length = 532

 Score =  117 bits (294), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 105/451 (23%), Positives = 200/451 (44%), Gaps = 8/451 (1%)

Query: 13  AFQSWMREGFPVHRGEIFHSINRLRKLQLNKRALEVMEWVIRERPYRPKELDYSYLLEFT 72
             + W  EG  V + E+   +  LRK++  K ALE+ EW++ +   + +  DY+  L+  
Sbjct: 80  TIRKWKEEGHSVRKYELNRIVRELRKIKRYKHALEICEWMVVQEDIKLQAGDYAVHLDLI 139

Query: 73  IKNHGISQGEKLFCCIPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLV 132
            K  G++  EK F  +P   +      +L+ + +   +   +    +KM   G   S L 
Sbjct: 140 SKIRGLNSAEKFFEDMPDQMRGHAACTSLLHSYVQNKLSDKAEALFEKMGECGFLKSCLP 199

Query: 133 FNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMK 192
           +N ++ +  S G+ + +P +++++K  + +P + T+++ +   A+ +++EG  KVY   K
Sbjct: 200 YNHMLSMYISRGQFEKVPVLIKELKI-RTSPDIVTYNLWLTAFASGNDVEGAEKVYLKAK 258

Query: 193 RSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGK 252
             ++ P+ V+Y +L   +A       A   +  +EK ++  N      LI L+  L    
Sbjct: 259 EEKLNPDWVTYSVLTNLYAKTDNVEKARLALREMEKLVSKKNRVAYASLISLHANLGDKD 318

Query: 253 DLERIWATVQ-ELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVI 311
            +   W  V+     +    Y+  I A  ++ +  +A+ L+ E +SV         N ++
Sbjct: 319 GVNLTWKKVKSSFKKMNDAEYLSMISAVVKLGEFEQAKGLYDEWESVSGTGDARIPNLIL 378

Query: 312 SVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITT 371
           + Y     +       + +   G  P+  T+  L     K   +E   K L+   K I +
Sbjct: 379 AEYMNRDEVLLGEKFYERIVEKGINPSYSTWEILTWAYLKRKDME---KVLDCFGKAIDS 435

Query: 372 KKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKI 431
             V+  T  +       +   E+G+V  AE L   L+KA Y   T +YN+L++ Y KA  
Sbjct: 436 --VKKWTVNVRLVKGACKELEEQGNVKGAEKLMTLLQKAGYVN-TQLYNSLLRTYAKAGE 492

Query: 432 NDPNLLRRMILGGARPDAETYSLLKLAEQFQ 462
               +  RM       D ET  L++L  Q +
Sbjct: 493 MALIVEERMAKDNVELDEETKELIRLTSQMR 523


>gi|356536769|ref|XP_003536907.1| PREDICTED: pentatricopeptide repeat-containing protein At4g02820,
           mitochondrial-like [Glycine max]
          Length = 516

 Score =  117 bits (293), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 103/454 (22%), Positives = 194/454 (42%), Gaps = 15/454 (3%)

Query: 13  AFQSWMREGF-PVHRGEIFHSINRLRKLQLNKRALEVMEWVIRERPYRPKELDYSYLLEF 71
           A   W  EG  P  + ++   +  LRK +  K ALEV EW+  ++  +  + DY+  L+ 
Sbjct: 63  AINKWKEEGHEPPRKYQLNRIVRELRKDKRYKHALEVCEWMTLQKDMKLVQGDYAVHLDL 122

Query: 72  TIKNHGISQGEKLFCCIPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYL 131
             K  G++  EK F  +P   + +   + L+ A +   ++  +   M KM      I+ L
Sbjct: 123 ITKVRGLNSAEKFFEDLPDRMRGKQTCSALLHAYVQNNLVDKAEALMLKMSECDLLINPL 182

Query: 132 VFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDM 191
            +N +I L  S G+ + +P I++++K +  +P + TF++ +   A+ +++E   +V  ++
Sbjct: 183 PYNHMISLYISNGKLEKVPKIIQELKMN-TSPDIVTFNLWLAACASQNDVETAERVLLEL 241

Query: 192 KRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKG 251
           K+++++P+ V+Y  L   +        A   V+ +E   +         L+ L+  +   
Sbjct: 242 KKAKIDPDWVTYSTLTNLYIKNASLEKAGATVKEMENRTSRKTRVAYSSLLSLHTNMGNK 301

Query: 252 KDLERIWATVQ-ELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSV 310
            D+ RIW  ++     +    Y+  I +  ++   + AE+L+ E +SV         N +
Sbjct: 302 DDVNRIWEKMKASFRKMNDNEYICMISSLLKLGDFAGAEDLYREWESVSGTNDVRVSNIL 361

Query: 311 ISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLIT 370
           +  Y     ++ A     ++   G  P   T+     G  K   VE+             
Sbjct: 362 LGSYINQDQMEMAEDFCNQIVQKGVIPCYTTWELFTWGYLKRKDVEKFLDYF-------- 413

Query: 371 TKKVRSSTPWLETTLSIIEIFA---EKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYV 427
           +K + S T W      + E F    E+     AE L   L+ A +   T +YN  +K Y 
Sbjct: 414 SKAISSVTKWSPDQRLVQEAFKIIEEQAHTKGAEQLLVILRNAGHVN-TNIYNLFLKTYA 472

Query: 428 KAKINDPNLLRRMILGGARPDAETYSLLKLAEQF 461
            A      +  RM     + D ET  LL L  + 
Sbjct: 473 TAGKMPMIVAERMRKDNVKLDEETRRLLDLTSKM 506


>gi|395146485|gb|AFN53641.1| pentatricopeptide repeat-containing protein [Linum usitatissimum]
          Length = 516

 Score =  117 bits (293), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 105/459 (22%), Positives = 201/459 (43%), Gaps = 11/459 (2%)

Query: 7   GEPVGSAFQSWMREGFPVHRGEIFHSINRLRKLQLNKRALEVMEWVIRERPYRPKELDYS 66
           G  V      ++ +G  + + E+   +  LRK       LE+MEW + +R       D +
Sbjct: 57  GGTVDKVLNDYVMDGMSIRKVELMRCVKELRKYGRFNHGLEIMEW-MEKRGINLGHGDLA 115

Query: 67  YLLEFTIKNHGISQGEKLFCCIPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGH 126
             L+   K  GI++ E  F  +    +N   Y +L+ +   K   + +L+  +KM  L  
Sbjct: 116 VRLDLICKTKGITEAENYFNGLVPSAKNPATYGSLLNSYCKKLDSEKALQLFQKMDKLKF 175

Query: 127 SISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMK 186
             + L FN L+ +    G+++ +P ++ QMK   + P   T++I ++   +  + EG+ K
Sbjct: 176 FRNSLPFNNLMSMYMRLGQQEKVPELVSQMKQMNLPPCTFTYNIWIQSLGHMRDFEGIKK 235

Query: 187 VYSDMKRSEV----EPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLI 242
           V  +M R++V      N  +Y  LA  +  A  +  A+  ++ +E+ +  ++ +    L+
Sbjct: 236 VLEEM-RNDVNFGNNFNWTTYSNLAAVYTSAGEFERAKLALKMMEERIDSHDRNAYHFLL 294

Query: 243 ILYGYLAKGKDLERIWATVQ-ELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQL 301
            LYG +A  +++ R+W  ++ +   V + SY++ ++A  R+  V    +++ E +SV   
Sbjct: 295 TLYGGIADLEEVHRVWGCLKAKFNQVTNASYLVMLQALARLKDVEGISKVFEEWESVCTS 354

Query: 302 KATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKA 361
                 N  I VY + G  ++A  +          P   T   L +   K   +E   K 
Sbjct: 355 YDMRVANVAIRVYLEKGMYNEAEAVFDGAMERTPGPYFKTREMLMVSLLKRRQLEPALKQ 414

Query: 362 LELGMKLITTKKVRSSTPW---LETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFV 418
           ++     +   +      W    E   +    F E+ DV  AE +++ LK  N    T V
Sbjct: 415 MKAAFTEVGQNEKGHEKEWRPSAEIVNAFFGYFEEEKDVEGAEKMWKILKCINRCDST-V 473

Query: 419 YNTLIKAYVKAKINDPNLLRRMILGGARPDAETYSLLKL 457
           Y  L+K Y+ A  +  ++  R+       D E   LL +
Sbjct: 474 YRLLMKTYIAAGKSAVDMRTRLAEDAVEVDEEIQRLLDV 512


>gi|356522970|ref|XP_003530115.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g02150-like [Glycine max]
          Length = 546

 Score =  116 bits (291), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 104/421 (24%), Positives = 192/421 (45%), Gaps = 12/421 (2%)

Query: 10  VGSA--FQSWMREGFPVHRGEIFHSINRLRKLQLNKRALEVMEWVIRERP--YRPKELDY 65
           VGSA     W  EG  + + E+   +  LRK +  +RALEV +W +  RP  +R  E D 
Sbjct: 95  VGSAEVLNQWENEGRHLTKWELSRVVKELRKYKRFRRALEVYDW-MNNRPERFRVSESDA 153

Query: 66  SYLLEFTIKNHGISQGEKLFCCIPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLG 125
           +  L+   K  G+S  E  F  +    +++  Y  L+   +     + +      MR  G
Sbjct: 154 AIQLDLIAKVRGLSSAEAFFLSLEDKLKDKKTYGALLNVYVHSRSKEKAESLFDTMRSKG 213

Query: 126 HSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLM 185
           + I  L FN ++ L  +      +  +  +M    +   + T++I +    +  ++E + 
Sbjct: 214 YVIHALPFNVMMTLYMNLNEYAKVDILASEMMEKNIQLDIYTYNIWLSSCGSQGSVEKME 273

Query: 186 KVYSDMKRS-EVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIIL 244
           +V+  M++   + PN  ++  +A+ +        AE  +  +E  + G +      L+ L
Sbjct: 274 QVFEQMEKDPSIIPNWSTFSTMASMYIRMDQNEKAEECLRKVEGRIKGRDRIPFHYLLSL 333

Query: 245 YGYLAKGKDLERIWATVQEL-PNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKA 303
           YG + K  ++ R+W T + + P++ +  Y   I +  ++  +  AE+L+ E  SVK    
Sbjct: 334 YGSVGKKDEVCRVWNTYKSIFPSIPNLGYHAIISSLVKLDDIEVAEKLYEEWISVKSSYD 393

Query: 304 TEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKAL- 362
               N +I  Y K G  DKA    ++M  +GC PN+ T+  L+ G      + E    L 
Sbjct: 394 PRIGNLLIGWYVKKGDTDKALSFFEQMLNDGCIPNSNTWEILSEGHIADKRISEAMSCLK 453

Query: 363 ELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTL 422
           E  M    +K  R    +L    + +E+  E+ D+ +AE L   L+++ + K + VY +L
Sbjct: 454 EAFMAAGGSKSWRPKPSYLS---AFLELCQEQDDMESAEVLIGLLRQSKFNK-SKVYASL 509

Query: 423 I 423
           I
Sbjct: 510 I 510


>gi|302801850|ref|XP_002982681.1| hypothetical protein SELMODRAFT_445231 [Selaginella moellendorffii]
 gi|300149780|gb|EFJ16434.1| hypothetical protein SELMODRAFT_445231 [Selaginella moellendorffii]
          Length = 1208

 Score =  116 bits (290), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 99/448 (22%), Positives = 202/448 (45%), Gaps = 50/448 (11%)

Query: 15  QSWMREGFPVHRGEIFHSINRLRKLQLNKRALEVMEWVIRERPYRPKELDYSYLLEFTIK 74
            +W+  G  V +  +    ++L  ++   RAL+++ W++ ++P+     DY+  ++ T +
Sbjct: 108 HAWISRGNLVSKEALISICHKLCYIRRQIRALQIINWIVDDKPFTVTPRDYALQIKLTCR 167

Query: 75  NHGISQGEKLFCCIPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFN 134
                + E+++  +P + + E +   L IA + +  + L  E                ++
Sbjct: 168 YASPIKAERIYDRVPAELKTEEVSTAL-IASMSRSNVMLKAE---------------AWH 211

Query: 135 RLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRS 194
             + LN++                           +++ +  N H    ++++Y D+  S
Sbjct: 212 TALKLNNA---------------------RACNMMMILFLRRNRHR--EVLQLYQDLVAS 248

Query: 195 EVEPNEVSYCILATAH----AVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAK 250
             +PN ++Y +L        A+  L   AE  ++ ++        +T   ++++Y YL K
Sbjct: 249 GGQPNPLTYLLLFKYRNRIGAIDGLEEAAEAALKKIDVHDEKVRNATRSDMMVVYAYLGK 308

Query: 251 GKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSV 310
              +E++W+ + +     +  +V AI AFG + ++SRAE++  ++   ++    + Y ++
Sbjct: 309 PDMVEKLWSMIHKESWTLAGRFVAAINAFGILGKISRAEDVLNQVLKTRKKAIQKPYCAM 368

Query: 311 ISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLIT 370
           I VY K+G ++KA   +K++ +    P    + HL  G    +  E+  + L  GM+ + 
Sbjct: 369 IGVYAKHGMMEKAELTMKKLRLELSFPWFAPFNHLVSGYLARDEPEKALEKLREGMEYVV 428

Query: 371 TKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAK 430
            K++    P  E  L ++ +FA K DV  AE L          K   +YN L+K YV+AK
Sbjct: 429 DKRIE---PDYEMVLGMMPVFASKRDVEGAEKLMSLFGLYGDAK---LYNALLKVYVEAK 482

Query: 431 IN-DPNLLRRMILGGARPDAETYSLLKL 457
           ++  P  L RM       D ET  LL+ 
Sbjct: 483 VSPGPFFLGRMARNKVSDDDETKRLLEF 510


>gi|297814019|ref|XP_002874893.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297320730|gb|EFH51152.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 525

 Score =  116 bits (290), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 103/453 (22%), Positives = 201/453 (44%), Gaps = 14/453 (3%)

Query: 14  FQSWMREGFPVHRGEIFHSINRLRKLQLNKRALEVMEWVIRERPYRPKELDYSYLLEFTI 73
            + W  EG  V + E+   +  LRK++  K ALE+ EW++ +   + +  DY+  L+   
Sbjct: 74  IRKWKEEGHSVRKYELNRIVRELRKIKRYKHALEICEWMVLQEDIKLQAGDYAVHLDLIS 133

Query: 74  KNHGISQGEKLFCCIPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVF 133
           K  G++  EK F  +P   +      +L+ + +   +   +    +KM   G   S L +
Sbjct: 134 KIRGLNSAEKFFEDLPDQMRGHAACTSLLHSYVQNKLSDKAEALFEKMGECGFLKSCLPY 193

Query: 134 NRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKR 193
           N ++ +  S G+ + +  +++++K  K +P + T+++ +   A+ +++EG  KVY   K 
Sbjct: 194 NHMLSMFISKGQFEKVSVLIKELKM-KTSPDIVTYNLWLTAFASGNDVEGAEKVYLKAKE 252

Query: 194 SEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKD 253
           S++ P+ V+Y +L   +A       A+  ++ +EK ++  N      LI L+  L     
Sbjct: 253 SKLNPDWVTYSVLTNLYAKTDNLEKAKLALKEMEKLVSKKNRVAYASLISLHANLGDKDG 312

Query: 254 LERIWATVQ-ELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVIS 312
           +   W  V+     +    Y+  I A  ++ +  +A+ L+ E +SV         N +++
Sbjct: 313 VNLTWKKVRSSFKKMNDAEYLSMISAVVKLGEFEQAKGLYDEWESVSGTGDARIPNLILA 372

Query: 313 VYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTK 372
            Y     I       + +   G  P+  T+  L     K   +E+     E        K
Sbjct: 373 EYMNRDEILLGEKFYERIVEKGINPSYSTWEILTWAYLKRKDLEKVLDCFE--------K 424

Query: 373 KVRSSTPW---LETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKA 429
            + S   W   +    ++ +   E+G+V  AE L   L+KA +   T +YN+L++ Y KA
Sbjct: 425 AIDSVKKWTVNVRLVKAVCKELEEQGNVKGAEKLMTLLQKAGHVN-TQLYNSLLRTYAKA 483

Query: 430 KINDPNLLRRMILGGARPDAETYSLLKLAEQFQ 462
                 +  RM       D ET  L++L  + +
Sbjct: 484 GEMALIVEERMAKDNVELDEETKELIRLTSRMR 516


>gi|326493098|dbj|BAJ85010.1| predicted protein [Hordeum vulgare subsp. vulgare]
 gi|326510377|dbj|BAJ87405.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 505

 Score =  115 bits (289), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 109/430 (25%), Positives = 180/430 (41%), Gaps = 15/430 (3%)

Query: 7   GEPVGSAFQSWMREGFPVHRGEIFHSINRLRKLQLNKRALEVMEWVIRERP-YRPKELDY 65
           G PVG     W      + + E+      LRK +    ALEV +W+   R  +     D 
Sbjct: 80  GRPVGRTLADWDEGERRLDKWELCRIARELRKFRRFNLALEVYDWMTDRRDRFSLSSSDM 139

Query: 66  SYLLEFTIKNHGISQGEKLFCCIPKDYQNELLYNNLVIACLDKGVIKLSLEY-MKKMRVL 124
           +  L+   K  G+   E+ F  +P   +++  Y +L +    +  +K   EY  ++MR  
Sbjct: 140 AIQLDLIAKVRGVPDAEEYFEKLPDPLKDKRTYGSL-LNVYAQARMKEKTEYTFEQMRKK 198

Query: 125 GHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGL 184
           G +   L FN L+         + +  +  +MK   ++  V T++I +K  A   + + +
Sbjct: 199 GFATDTLPFNVLMNFYVDVAEPEKVSTVTDEMKQRNISFDVCTYNIWIKCCAAMKDADAM 258

Query: 185 MKVYSDMKRSE-VEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLII 243
            +V + M   E V  N  +Y  LA+ H     +  AE  ++  EK  TG +      LI 
Sbjct: 259 ERVLNQMTADESVVANWTTYTTLASMHIKLENFEKAEECLKEAEKRATGRDKKCFHFLIT 318

Query: 244 LYGYLAKGKDLERIW----ATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVK 299
           LY +L K +++ RIW    AT + + N+    Y   + A  R+  +  AE L+ E  S  
Sbjct: 319 LYSHLQKKEEVYRIWNWYKATFKTIHNL---GYQEVLSALVRLGDIEGAELLYEEWASKS 375

Query: 300 QLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGF 359
                +  N +++ Y + GF+ KA   L      G  P   T+  LA    K N + E  
Sbjct: 376 SSFDPKTMNILLAWYSREGFVVKAQQTLNRFVEKGGNPKPNTWEILATAYLKDNQLSEAL 435

Query: 360 KALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVY 419
             LE    + +  K R     +ET L+    F EK D  + + L   L+     +    Y
Sbjct: 436 SCLEKATAVKSASKWRPRPTNVETLLA---YFKEKNDTESVDRLMSVLRSRGCAE-NEEY 491

Query: 420 NTLIKAYVKA 429
            +LI  Y  A
Sbjct: 492 KSLIDTYALA 501


>gi|359480173|ref|XP_003632411.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At1g02370, mitochondrial-like [Vitis vinifera]
          Length = 506

 Score =  115 bits (288), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 103/436 (23%), Positives = 194/436 (44%), Gaps = 7/436 (1%)

Query: 7   GEPVGSAFQSWMREGFPVHRGEIFHSINRLRKLQLNKRALEVMEWVIRERPYRPKELDYS 66
           G  V       ++EG  + + E+   I +LRK +  + ALE+M+W +  R       DY+
Sbjct: 57  GGSVADTLNEHIKEGKLIAKHELSSCIKQLRKYRQFQHALEIMDW-MENRKIFFSYADYA 115

Query: 67  YLLEFTIKNHGISQGEKLFCCIPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGH 126
             L+   K  G++  E+ F  +    +N L Y  L+     + + + +L   +KM  L  
Sbjct: 116 VRLDLLSKTKGLATAEEYFNNLSPSAKNLLTYGTLLNCYCKEKMEEKALALFEKMDELNF 175

Query: 127 SISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMK 186
           + + L FN L+ L+   G+ + +P ++ +MK   ++P   T++ILM+  A  ++IEG  +
Sbjct: 176 ASTSLTFNNLMSLHMRLGKPEMVPPLVDEMKKRSISPDTFTYNILMQSYARLNDIEGAER 235

Query: 187 VYSDMKR-SEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILY 245
           V  ++KR +E + +  +Y  LA  +  ARL+  AE  ++ LE+ M  ++      LI LY
Sbjct: 236 VLEEIKRENEDKLSWTTYSNLAAVYVNARLFEKAELALKKLEEEMGFHDRLAYHFLISLY 295

Query: 246 GYLAKGKDLERIWATVQE-LPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKAT 304
             +    ++ R+W +++   P   + SY + ++A   +  V   +  + E +S       
Sbjct: 296 AGINNLSEVNRVWNSLKSAFPKTNNMSYFIMLQALANLNDVDGLKICFEEWKSSCFSFDV 355

Query: 305 EQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALEL 364
              N  +  +     I  A  +L E       P             K   ++   K +E 
Sbjct: 356 RLANVAVRAFLGWDMIKDAESILYEAVKRSSGPFYTALDMFMAHHLKVREIDTALKYMEA 415

Query: 365 GMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIK 424
               +   + +   P  E  L+ ++ F E+ DV  AE   + LK  +    +  Y  L++
Sbjct: 416 AASEVKNNEWQ---PAPERVLAFLKYFEEEKDVEGAEKFCKILKNISGLD-SNAYQLLLQ 471

Query: 425 AYVKAKINDPNLLRRM 440
             V A   +P + +RM
Sbjct: 472 TXVAAGRTEPEMRKRM 487


>gi|147775992|emb|CAN73453.1| hypothetical protein VITISV_024964 [Vitis vinifera]
          Length = 499

 Score =  115 bits (287), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 106/454 (23%), Positives = 210/454 (46%), Gaps = 17/454 (3%)

Query: 13  AFQSWMREGFPVHRGEIFHSINRLRKLQLNKRALEVMEWVIRERPYRPKELDYSYLLEFT 72
           A + W +EG  + + ++   I +LR  +    ALE+ EW+  +  +     D +  L+  
Sbjct: 54  ALEQWRKEGRSIKQQDLHRLIRKLRTFKRYNHALEIYEWIRDKFYFDISPGDVAIQLDLI 113

Query: 73  IKNHGISQGEKLFCCIPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLV 132
            K HG+ Q EK F   P   ++  +Y  L+     K  ++ +   M++MR +G  +  L 
Sbjct: 114 SKVHGLEQAEKYFNETPNSLRSFQVYGALLNCYSQKKSLEKAEAIMQEMRDMGF-VKTLS 172

Query: 133 FNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEG----LMKVY 188
           +N ++ L S  G+ + + N++++M+ + +     T+ I +       ++EG    LMK+ 
Sbjct: 173 YNVMLGLYSRLGKHEKLDNLMQEMEENGIGLDSFTYCIRLNAYCATSDMEGMEKLLMKLE 232

Query: 189 SDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWS-TLDVLIILYGY 247
           +D     V  +  +Y + A  +  A L   A   ++  E+ ++G +     ++L+ LY  
Sbjct: 233 TD---PAVNSDWNAYIVAANGYLKADLKEKAVEMLKKSEQFISGRSRRFGYEILLTLYAT 289

Query: 248 LAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQY 307
           +    +  RIW   + +    +  YV  + +  ++  +  AE+ + E  S  +       
Sbjct: 290 MGNKTEXYRIWNLYKTIGKFFNTGYVAMVSSLLKLDDMDGAEKTFEEWLSGNKFFDFRVP 349

Query: 308 NSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMK 367
           N +I  YCK G ++KA  L+      G +P A+T+  LA G  ++N +E+    L+    
Sbjct: 350 NLLIRAYCKKGLLEKAEQLVSRAIEQGEEPIAVTWDALAAGYHENNQMEKAVDTLKKA-- 407

Query: 368 LITTKKVRSSTPWLETTLS-IIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAY 426
           L+ T +     P    TLS  +E    K DV  AENL   L++ +     +  + L+  Y
Sbjct: 408 LLATSQGWKPNP---VTLSACLEYLKGKXDVEEAENLIRLLREQSLVS-AYDSDRLVN-Y 462

Query: 427 VKAKINDPNLLRRMILGGARPDAETYSLLKLAEQ 460
           ++++    + + +M+      DAET  ++ L ++
Sbjct: 463 IRSEEPGSSTIAQMLWDHEDLDAETDGVVDLKQE 496


>gi|326498623|dbj|BAK02297.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 505

 Score =  115 bits (287), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 109/430 (25%), Positives = 180/430 (41%), Gaps = 15/430 (3%)

Query: 7   GEPVGSAFQSWMREGFPVHRGEIFHSINRLRKLQLNKRALEVMEWVIRERP-YRPKELDY 65
           G PVG     W      + + E+      LRK +    ALEV +W+   R  +     D 
Sbjct: 80  GRPVGRTLADWDEGERRLDKWELCRIARELRKFRRFNLALEVYDWMTDRRDRFSLSSSDM 139

Query: 66  SYLLEFTIKNHGISQGEKLFCCIPKDYQNELLYNNLVIACLDKGVIKLSLEY-MKKMRVL 124
           +  L+   K  G+   E+ F  +P   +++  Y +L +    +  +K   EY  ++MR  
Sbjct: 140 AIQLDLIAKVRGVPDTEEYFEKLPDPLKDKRTYGSL-LNVYAQARMKEKTEYTFEQMRKK 198

Query: 125 GHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGL 184
           G +   L FN L+         + +  +  +MK   ++  V T++I +K  A   + + +
Sbjct: 199 GFATDTLPFNVLMNFYVDVAEPEKVSTVTDEMKQRNISFDVCTYNIWIKCCAAMKDADAM 258

Query: 185 MKVYSDMKRSE-VEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLII 243
            +V + M   E V  N  +Y  LA+ H     +  AE  ++  EK  TG +      LI 
Sbjct: 259 ERVLNQMTADESVVANWTTYTTLASMHIKLENFEKAEECLKEAEKRATGRDKKCFHFLIT 318

Query: 244 LYGYLAKGKDLERIW----ATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVK 299
           LY +L K +++ RIW    AT + + N+    Y   + A  R+  +  AE L+ E  S  
Sbjct: 319 LYSHLQKKEEVYRIWNWYKATFKTIHNL---GYQEVLSALVRLGDIEGAELLYEEWASKS 375

Query: 300 QLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGF 359
                +  N +++ Y + GF+ KA   L      G  P   T+  LA    K N + E  
Sbjct: 376 SSFDPKTMNILLAWYSREGFVVKAQQTLNRFVEKGGNPKPNTWEILATAYLKDNQLSEAL 435

Query: 360 KALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVY 419
             LE    + +  K R     +ET L+    F EK D  + + L   L+     +    Y
Sbjct: 436 SCLEKATAVKSASKWRPRPTNVETLLA---YFKEKNDTESVDRLMSVLRSRGCAE-NEEY 491

Query: 420 NTLIKAYVKA 429
            +LI  Y  A
Sbjct: 492 KSLIDTYALA 501


>gi|357140786|ref|XP_003571944.1| PREDICTED: pentatricopeptide repeat-containing protein At2g20710,
           mitochondrial-like [Brachypodium distachyon]
          Length = 497

 Score =  114 bits (286), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 116/447 (25%), Positives = 199/447 (44%), Gaps = 27/447 (6%)

Query: 20  EGFPVHRGEIFHSINRLRKLQLNKRALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGIS 79
           E  PV + E+   I +L +L+    ALE+  W+   R +  K  D +Y LE   K HG+ 
Sbjct: 62  EDRPVEKHELQAIIKKLIRLRRFSHALEMSMWMTDRRYFPLKPGDVAYRLELISKVHGLK 121

Query: 80  QGEKLFCCIPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIIL 139
              + F  + K+ +    Y +L+    +   ++ + ++  +M+ +G   SY  +N ++ L
Sbjct: 122 SAVEYFGGLSKEIKKSQCYGSLLKCYAEAKFVEEAEKFFGEMQEMGMMSSY-PYNVMMKL 180

Query: 140 NSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPN 199
               G+ + +  + R M+   + P + T  IL+ +     ++EG+ +V    K  E    
Sbjct: 181 YWETGQVEKVRTMYRAMEESGIKPDLFTIDILLTVYKASGDLEGIEEVLEKAKPRENLVG 240

Query: 200 EVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYL-------AKGK 252
             SY I+A+A   A L   A   ++  EK +   N        + YG+L           
Sbjct: 241 WHSYAIVASAFMKAGLQGKALQALQESEKRIDPKNGR------VAYGFLLSMCADSGMRS 294

Query: 253 DLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVIS 312
           +++RIW   +      +  Y+  I A  ++     AE+ + E +S          N +++
Sbjct: 295 EVDRIWDVYKSKVPTCNSMYMCRISALLKMNDTDEAEKAFREWESRFVHHDFRLINLLLN 354

Query: 313 VYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTK 372
            YC  G ++KA  L+ E    G  P A T+  LA G FK   V    KA++L     T K
Sbjct: 355 GYCAEGLMEKAEALVDEAITKGRMPYANTWYKLAAGFFKDGQV---LKAVDL-----TRK 406

Query: 373 KVRSST----PWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVK 428
            + S+T    P L   L  ++ F E+ +V  AE +   L ++       VY++L+K YV 
Sbjct: 407 ALASATSGWEPDLTNVLMSLDHFMEQKNVEAAEEM-ASLLRSLVPLTRDVYHSLLKTYVH 465

Query: 429 AKINDPNLLRRMILGGARPDAETYSLL 455
           A +   +LL RM   G   D ET  +L
Sbjct: 466 AGMPVSDLLDRMNEDGFEADQETDRIL 492


>gi|357165075|ref|XP_003580262.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g02150-like [Brachypodium distachyon]
          Length = 513

 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 98/401 (24%), Positives = 170/401 (42%), Gaps = 12/401 (2%)

Query: 9   PVGSAFQSWMREGFPVHRGEIFHSINRLRKLQLNKRALEVMEWVIRERP-YRPKELDYSY 67
           PVG     W      + + E+      LRK +    AL+V +W+   R  +     D + 
Sbjct: 92  PVGRTLADWDEGERRLDKWELCRVARELRKFRRFNLALQVYDWMTERRDRFSLSSSDMAI 151

Query: 68  LLEFTIKNHGISQGEKLFCCIPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHS 127
            L+   K  G+   E+ F  +P   +++  Y +L+       + + + +  ++MR  G++
Sbjct: 152 QLDLVAKVRGVPHAEEYFESLPDPLKDKRTYGSLLNVYAQARMKEKTEDTFEQMRKKGYA 211

Query: 128 ISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKV 187
              L FN L+         + +  +  +MK   V+  V T++I +K  A   + +G+ +V
Sbjct: 212 SDTLPFNVLMNFYVDVEEPQKVSAVTDEMKERNVSFDVCTYNIWIKSFAAMKDADGMDRV 271

Query: 188 YSDMKRSE-VEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYG 246
           ++ M   E V  N  +Y  LA+ H     +  AE  ++  EK  TG +      LI LY 
Sbjct: 272 FNQMIADESVVANWTTYTTLASMHIKLGNFEKAEVCLKEAEKRTTGRDKKCFHFLITLYS 331

Query: 247 YLAKGKDLERIW----ATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLK 302
           YL K +++ RIW    AT   + N+    Y   + A  R+  +  AE L+ E  S     
Sbjct: 332 YLQKKEEVYRIWNWYKATFSTIHNL---GYQEVLSALVRLGDIEGAELLYEEWASKSSSF 388

Query: 303 ATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKAL 362
             +  N +++ Y + GF+ KA   L      G  P   T+  LA    K N + E    +
Sbjct: 389 DPKTMNILLAWYSREGFVVKAEQTLNRFVEKGGNPKPNTWEILASAYLKDNQLSEALSCM 448

Query: 363 ELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENL 403
           E    + +  + R   P      S++  F E  D  +A+ L
Sbjct: 449 EKAAAVKSASRWR---PRPSNVESLLAYFKENNDTDSADRL 486


>gi|125532539|gb|EAY79104.1| hypothetical protein OsI_34210 [Oryza sativa Indica Group]
          Length = 513

 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 112/449 (24%), Positives = 202/449 (44%), Gaps = 19/449 (4%)

Query: 15  QSWMREGFPVHRGEIFHSINRLRKLQLNKRALEVMEWVIRERPYRPKELDYSYLLEFTIK 74
           Q W+ E  PV + E+   +  LR+ +   +ALE+  W+   R       D +Y LE   K
Sbjct: 71  QWWLAEEHPVSKPELQSLVKYLRRRRRFSQALELSMWMTERRHLHLSPGDVAYRLELISK 130

Query: 75  NHGISQGEKLFCCIPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFN 134
            HG+ +  + F  +P   +    Y +L+    +   ++ + E  + MR +G + SY  +N
Sbjct: 131 VHGLDKAVEYFDAVPNQLRELQCYGSLLRCYTEAERVEKAEELFENMRGMGMANSY-AYN 189

Query: 135 RLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRS 194
            ++ L S  G+ + + ++ + M+   + P + T   L+   A+  ++E + KV      +
Sbjct: 190 AMMNLYSQIGQVERVHSMYKSMEEGGIVPDIFTIDNLVSAYADVEDVEAIEKVLEKASCN 249

Query: 195 EVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTG--NNWSTLDVLIILYGYLAKGK 252
            +     S+ I+      A +   A    +  EK +T   +       L+ +Y  L    
Sbjct: 250 NLMSWH-SFAIVGKVFMKAGMQERALQAFQESEKRITARKDGRVAYGFLLTMYADLQMDS 308

Query: 253 DLERIWATVQ-ELPNVRSKS-YVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSV 310
           +++RIW   + ++P     + Y+  I    ++  +  AE+ + E +S      +   N +
Sbjct: 309 EVDRIWDVYRSKVPASACNTMYMCRISVLLKMNDIVGAEKAYEEWESKHVYHDSRLINIL 368

Query: 311 ISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLIT 370
           ++ YCK G ++KA  L+ +    G  P + T+  LA G FK   V +  KA +L  K + 
Sbjct: 369 LTAYCKEGLMEKAEALVDQFIKKGRTPFSNTWYKLAGGYFK---VGQASKAADLTKKALA 425

Query: 371 TKKVRSSTPW---LETTLSIIEIFAEKGDVGNAENLFEELKK-ANYTKYTFVYNTLIKAY 426
           +    +S  W   L   L  I  FAE+ +V  AE +   L++    T+   VY+ L+K Y
Sbjct: 426 S----ASNEWKPDLANVLMSINYFAEQKNVEAAEEMASLLQRLVPLTR--DVYHGLLKTY 479

Query: 427 VKAKINDPNLLRRMILGGARPDAETYSLL 455
           V A     +LL RM   G   D ET  +L
Sbjct: 480 VNAGEPASDLLDRMKKDGIEADEETDKIL 508


>gi|297809953|ref|XP_002872860.1| hypothetical protein ARALYDRAFT_490379 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297318697|gb|EFH49119.1| hypothetical protein ARALYDRAFT_490379 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 500

 Score =  114 bits (284), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 110/454 (24%), Positives = 199/454 (43%), Gaps = 12/454 (2%)

Query: 6   RGEPVGSAFQSWMREGFPVHRGEIFHSINRLRKLQLNKRALEVMEWVIRERPYRPKELDY 65
           RG  +       + EG PV + E+      LRK +  +RALE+ EW+ R+        D+
Sbjct: 50  RGGKMEETLNQLVMEGVPVKKHELIRYAKDLRKFRQPQRALEIFEWMERKEIVFTGS-DH 108

Query: 66  SYLLEFTIKNHGISQGEKLFCCIPKDYQNELLYNNLV-IACLDKGVIKLSLEYMKKMRVL 124
           +  L+   K  G+   E  F  +    +N+  Y +L+   C++K   K    + + M  L
Sbjct: 109 AIRLDLIAKTKGLEAAETYFNSLNDSIKNQSTYGSLLNCYCVEKEEDKAKAHF-ENMVDL 167

Query: 125 GHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGL 184
            H  + L FN L+ +    G+ + +P ++  MK   + P   T+ + ++   +  +++G+
Sbjct: 168 NHVSNSLPFNNLMAMYLRIGQSEKVPALVVAMKQKNITPCDITYSMWIQSCGSLKDLDGV 227

Query: 185 MKVYSDMK-RSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLII 243
            KV  +MK   E   +  ++  LA  +    LY  AE  +++LE  M  +       LI 
Sbjct: 228 EKVLDEMKAEGEGISSWDTFANLAAIYIKVGLYDKAEEALKSLENKMNPHIRDCYHFLIS 287

Query: 244 LYGYLAKGKDLERIWATVQEL-PNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLK 302
           LY  +A   ++ R+W  +++  PNV + SY+  ++A  ++  +   ++++ E +S     
Sbjct: 288 LYAGIANASEVYRVWDLLKKRHPNVNNSSYLTMLQALSKLNDIDGIKKIFTEWESTCWTY 347

Query: 303 ATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRH-LALGCFKSNLVEEGFKA 361
                N  IS Y K    ++A  +    +M  CK      R  L +   K++  +   K 
Sbjct: 348 DMRMANVAISSYLKQNMYEEAEAVFNG-AMTKCKGQFSKARQLLMMHLLKNDQADLALKH 406

Query: 362 LELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNT 421
            E  +  +      SS    E   S    F E  DV  AE   + L K +    +  Y  
Sbjct: 407 FEAAVLDLDKNWTWSS----ELISSFFLHFEEAKDVDGAEEFCKTLTKWSPLG-SETYTL 461

Query: 422 LIKAYVKAKINDPNLLRRMILGGARPDAETYSLL 455
           L+K Y+ A+   P++ +R+   G + D E   LL
Sbjct: 462 LMKTYLSAEKACPDMKKRLEEQGIQVDEEQDCLL 495


>gi|307136024|gb|ADN33878.1| DNA-binding protein [Cucumis melo subsp. melo]
          Length = 470

 Score =  114 bits (284), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 82/329 (24%), Positives = 162/329 (49%), Gaps = 4/329 (1%)

Query: 7   GEPVGSAFQSWMREGFPVHRGEIFHSINRLRKLQLNKRALEVMEWVIRERPYRPKELDYS 66
           G  V SA   W+ EG  + R +I  ++  LR+ ++  +AL+  EW +        + DY+
Sbjct: 142 GLSVPSALDKWVSEGKELSRADISLTMLYLRRRRMFGKALKFSEW-LEANGKLVTDRDYA 200

Query: 67  YLLEFTIKNHGISQGEKLFCCIPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGH 126
             L+   K  G+   E     IPK +Q E++Y  L+  C+    ++ + E   KM+ L  
Sbjct: 201 SQLDLIGKLRGLRMAENYISKIPKSFQGEVVYRTLLANCVMSTNVRKAEEVFNKMKDLEF 260

Query: 127 SISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMK 186
            I+    N+L++L     ++K I ++L  M+ + V P   T+ IL+  +   ++I G+ +
Sbjct: 261 PITAFACNQLLLLYKRTDKKK-IADVLLLMEKENVKPSPFTYKILIDAKGLSNDISGMEQ 319

Query: 187 VYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYG 246
           V   MK   ++    +  +LA  +  A L   A+  ++  E+  +  +      L+ LYG
Sbjct: 320 VVDTMKAEGIKLGVGTLLLLAKHYVSAGLKDKAKATLKETEEINSKGSRRPCRFLLPLYG 379

Query: 247 YLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQ 306
            L    ++ R+W   +  P+V  +  + AI A+G++  V  AE+++  +    +  +T  
Sbjct: 380 ELQMEDEVRRLWEICESNPHV--EECMAAIVAWGKLKNVQEAEKIFDRVVKTGKKLSTRH 437

Query: 307 YNSVISVYCKNGFIDKASGLLKEMSMNGC 335
           Y+++++VY  +  + K   L+ +M+ +GC
Sbjct: 438 YSTMMNVYRDSKMLTKGKELVNQMAESGC 466


>gi|224077120|ref|XP_002305141.1| predicted protein [Populus trichocarpa]
 gi|222848105|gb|EEE85652.1| predicted protein [Populus trichocarpa]
          Length = 492

 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 107/464 (23%), Positives = 210/464 (45%), Gaps = 25/464 (5%)

Query: 9   PVGSA------FQSWMREGFPVHRGEIFHSINRLRKLQLNKRALEVMEWVIRERP--YRP 60
           P+GS         SW+R G  V   E+   I+ LRK +    AL+V EW+ ++    + P
Sbjct: 38  PLGSTPSLEPELDSWVRSGNKVRVAELQRIIHDLRKRKRFSHALQVSEWMHKKDICIFSP 97

Query: 61  KELDYSYLLEFTIKNHGISQGEKLFCCIPKDYQNELLYNNLVIACLDKGVIKLSLEYMKK 120
            E  ++  L+   + HG    E  F  +    +NE  Y  L+   + +     S+ +++K
Sbjct: 98  SE--HAVQLDLIGRVHGFVSAENYFNNLRDQDKNEKTYGALLNCYVRQRETDKSILHLQK 155

Query: 121 MRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHN 180
           M+ +G + S L +N ++ L ++ G+ + +P +L +MK + V P   ++ + +       +
Sbjct: 156 MKEMGFAKSSLTYNDIMCLYTNVGQHEKVPQVLNEMKENNVLPDNFSYRLCINSFGARDD 215

Query: 181 IEGLMKVYSDMKRSEVEPNEV----SYCILATAHAVARLYTVAETYVEALEKSMTGNNWS 236
           +EG+ K+ ++M   E +P+ V    +Y + A  + +  L   A   ++  E  +   + +
Sbjct: 216 LEGMEKILNEM---EHQPDIVMDWNTYAVAANFYIIGDLTDKAIDTLKKSEARLDKKDGT 272

Query: 237 TLDVLIILYGYLAKGKDLERIWATVQELPNVR-SKSYVLAIEAFGRIAQVSRAEELWLEM 295
             + LI LY  L    ++ R+W   +       +K Y++ +E+  ++++   AE++  E 
Sbjct: 273 GYNHLISLYAKLGNKTEVLRLWDLEKSACERHINKDYIIMMESLLKLSEFEEAEKMLKEW 332

Query: 296 QSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLV 355
           +S          N++I  Y + G  +KA  LL+ ++  G      ++  +A G F  + V
Sbjct: 333 ESSGNFYDVRVPNTLIIGYSRKGLCEKAKALLENLTEKGKMTLPNSWGIVAAGFFDKSEV 392

Query: 356 EEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAEN--LFEELKKANYT 413
            + F  ++  + L    K      W      I  I +  GD G+AE+   F    K    
Sbjct: 393 AKAFSCMKAALCLYVENK-----GWKPNQRVINGILSWLGDEGSAEDAEAFVSSLKTVIP 447

Query: 414 KYTFVYNTLIKAYVKAKINDPNLLRRMILGGARPDAETYSLLKL 457
               +Y+ ++KA ++A      LL  M     + D ET  +L++
Sbjct: 448 VNREMYHAVLKANIRAGKEVHRLLDGMKTYNIKEDEETKKILRM 491


>gi|22329290|ref|NP_171717.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806400|sp|Q8LPS6.2|PPR3_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g02150
 gi|2317908|gb|AAC24372.1| Unknown protein [Arabidopsis thaliana]
 gi|332189272|gb|AEE27393.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 524

 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 94/407 (23%), Positives = 182/407 (44%), Gaps = 12/407 (2%)

Query: 10  VGSAFQSWMREGFPVHRGEIFHSINRLRKLQLNKRALEVMEWVI-RERPYRPKELDYSYL 68
             S    W + G  + + E+   +  LRK +   +ALEV +W+  R   +R    D +  
Sbjct: 83  AASVLNQWEKAGRKLTKWELCRVVKELRKYKRANQALEVYDWMNNRGERFRLSASDAAIQ 142

Query: 69  LEFTIKNHGISQGEKLFCCIPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSI 128
           L+   K  GI   E+ F  +P+++++  +Y +L+ A +     + +   +  MR  G+++
Sbjct: 143 LDLIGKVRGIPDAEEFFLQLPENFKDRRVYGSLLNAYVRAKSREKAEALLNTMRDKGYAL 202

Query: 129 SYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVY 188
             L FN ++ L  +      +  ++ +MK   +   + +++I +    +  ++E +  VY
Sbjct: 203 HPLPFNVMMTLYMNLREYDKVDAMVFEMKQKDIRLDIYSYNIWLSSCGSLGSVEKMELVY 262

Query: 189 SDMKRS-EVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGY 247
             MK    + PN  ++  +AT +        AE  +  +E  +TG N      L+ LYG 
Sbjct: 263 QQMKSDVSIYPNWTTFSTMATMYIKMGETEKAEDALRKVEARITGRNRIPYHYLLSLYGS 322

Query: 248 LAKGKDLERIWATVQEL-PNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQ 306
           L   K+L R+W   + + P++ +  Y   + +  R+  +  AE+++ E   VK       
Sbjct: 323 LGNKKELYRVWHVYKSVVPSIPNLGYHALVSSLVRMGDIEGAEKVYEEWLPVKSSYDPRI 382

Query: 307 YNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGM 366
            N +++ Y KN  ++ A GL   M   G KP++ T+  LA+G  +   + E    L    
Sbjct: 383 PNLLMNAYVKNDQLETAEGLFDHMVEMGGKPSSSTWEILAVGHTRKRCISEALTCLRNAF 442

Query: 367 KLITTKKVRSSTPWLETTLSIIEIFA---EKGDVGNAENLFEELKKA 410
                     S+ W    L +   F    E+ DV + E + E L+++
Sbjct: 443 ------SAEGSSNWRPKVLMLSGFFKLCEEESDVTSKEAVLELLRQS 483



 Score = 38.9 bits (89), Expect = 6.0,   Method: Compositional matrix adjust.
 Identities = 49/194 (25%), Positives = 85/194 (43%), Gaps = 16/194 (8%)

Query: 271 SYVLAIEAFGRIAQVSRAEELWLEMQS-VKQLKATEQYNSVISVYCKNGFIDKASGLLKE 329
           SY + + + G +  V + E ++ +M+S V        ++++ ++Y K G  +KA   L++
Sbjct: 241 SYNIWLSSCGSLGSVEKMELVYQQMKSDVSIYPNWTTFSTMATMYIKMGETEKAEDALRK 300

Query: 330 MSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIE 389
           +       N I Y +L L  + S     G K  EL       K V  S P L    +++ 
Sbjct: 301 VEARITGRNRIPYHYL-LSLYGS----LGNKK-ELYRVWHVYKSVVPSIPNLGYH-ALVS 353

Query: 390 IFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKINDP-----NLLRRMILGG 444
                GD+  AE ++EE      +    + N L+ AYVK   ND       L   M+  G
Sbjct: 354 SLVRMGDIEGAEKVYEEWLPVKSSYDPRIPNLLMNAYVK---NDQLETAEGLFDHMVEMG 410

Query: 445 ARPDAETYSLLKLA 458
            +P + T+ +L + 
Sbjct: 411 GKPSSSTWEILAVG 424


>gi|358344191|ref|XP_003636175.1| ATP-dependent DNA helicase PIF1 [Medicago truncatula]
 gi|355502110|gb|AES83313.1| ATP-dependent DNA helicase PIF1 [Medicago truncatula]
          Length = 790

 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 100/398 (25%), Positives = 175/398 (43%), Gaps = 28/398 (7%)

Query: 22  FPVHRGEIFHSINRLRKLQLNKRALEVMEWVIRERP--YRPKELDYSYLLEFTIKNHGIS 79
           F V    +  + N   K+  N+  L+V +W +  RP  +R    D +  L+   + HG+S
Sbjct: 271 FLVSNNVLISATNDFMKVMTNEHVLQVYDW-MNNRPERFRISASDVAIQLDLIARVHGVS 329

Query: 80  QGEKLFCCIPKDYQNELLYNNLVIACL---DKGVIKLSLEYMKKMRVLGHSISYLVFNRL 136
             E  F  +  D +++  Y  L+ A +    +   +  LE M+  R L HS   L FN +
Sbjct: 330 SAESFFLNLTNDLKDKRTYGALLNAYVHSRSREKAESLLEVMRSKRYLTHS---LPFNLM 386

Query: 137 IILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDM-KRSE 195
           + L+ +      +  ++ +MK   +   + T++I +    +  +IE + +V+  M K   
Sbjct: 387 MTLSMNLKDYDKVDMLVSEMKEKNIQLDIYTYNIWLSSCGSQGSIEKMEQVFEQMLKDPT 446

Query: 196 VEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLE 255
           + PN  ++  +A  +    L+  A+  ++  E  + G +      L+ LYG +    ++ 
Sbjct: 447 IIPNWSTFSTMAAMYIKMELFEKAQECLKKAEGRILGRDKVPFHYLLSLYGSVGNKDEVY 506

Query: 256 RIWATVQEL-PNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVY 314
           R+W   + + P++ +  Y   I +F R+  + RAE+L+ E  SV+    +   N +IS Y
Sbjct: 507 RVWNNYKSMFPSIPNLGYHAVISSFVRMDDIERAEKLYEEWVSVRPSDDSRIGNLLISWY 566

Query: 315 CKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKV 374
            K G  DK     K MS  G  PN+ T+  L+ G      V E    LE   K   T   
Sbjct: 567 LKKGKSDKVFSFFKHMSEGGGCPNSTTWELLSEGHIAEKRVSEALSCLE---KAFMTSDS 623

Query: 375 RSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANY 412
           +S  P              K +   AE L E L+K+ Y
Sbjct: 624 KSWKP--------------KANKNCAEVLIELLRKSGY 647


>gi|297734632|emb|CBI16683.3| unnamed protein product [Vitis vinifera]
          Length = 423

 Score =  113 bits (282), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 90/363 (24%), Positives = 166/363 (45%), Gaps = 18/363 (4%)

Query: 11  GSAFQSWMREGFPVHRGEIFHSINRLRKLQLNKRALEVMEWVI-RERPYRPKELDYSYLL 69
            S    W  EG  + + E+   +  LRK +  K ALEV EW+  R   +R    D +  L
Sbjct: 9   ASVLNQWENEGKRLTKWELCRVVKELRKFKRFKMALEVYEWMNNRGERFRLSSSDAAIQL 68

Query: 70  EFTIKNHGISQGEKLFCCIPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSIS 129
           +   K  G+S  E  F  +P   +++ +Y  L+ A +   +   +   ++K+R  G++ +
Sbjct: 69  DLIAKVCGVSSAEDYFSRLPDTLKDKRIYGALLNAYVQAKMRDKAEILIEKLRNKGYATT 128

Query: 130 YLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYS 189
            L FN ++ L  +      + +++ +M    +   + +++I +   ++  + E + +V+ 
Sbjct: 129 PLPFNVMMTLYMNLKELDKVQSMISEMMNKNIQLDIYSYNIWL---SSCESTERMEQVFE 185

Query: 190 DMK-RSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYL 248
            MK    + PN  ++  +AT +     +  AE  ++ +E  +T  +      LI LYG  
Sbjct: 186 QMKLERTINPNWTTFSTMATMYIKLGQFEKAEECLKKVESRITNRDRMPYHYLISLYGST 245

Query: 249 AKGKDLERIWATVQ-ELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQY 307
               ++ R W   + + PN+ +  Y   I +  R+  +  AE+++ E  SVK        
Sbjct: 246 GNKAEVYRAWNIYKSKFPNIPNLGYHALISSLVRVGDLEGAEKIYEEWLSVKSSYDPRIG 305

Query: 308 NSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHL------------ALGCFKSNLV 355
           N ++  Y K GF++KA G L  M   G KPN+ T+  L            AL CFK  ++
Sbjct: 306 NLLLGCYVKEGFLEKAEGFLDHMIEAGGKPNSTTWEILAEGNTGVKKISDALSCFKRAVL 365

Query: 356 EEG 358
            EG
Sbjct: 366 AEG 368


>gi|357440753|ref|XP_003590654.1| WD repeat-containing protein [Medicago truncatula]
 gi|355479702|gb|AES60905.1| WD repeat-containing protein [Medicago truncatula]
          Length = 562

 Score =  113 bits (282), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 110/459 (23%), Positives = 206/459 (44%), Gaps = 21/459 (4%)

Query: 13  AFQSWMREGFPVHRGEIFHSINRL-RKLQLNKR---ALEVMEWVIRERPYRPKELDYSYL 68
           A   W  EG  + R    + +NR+ R+L+ NKR   ALEV EW+  +   +  E DY+  
Sbjct: 55  AINKWKEEGHTLPRK---YQLNRMIRELRKNKRYKHALEVCEWMKLQNDIKLVEGDYAVQ 111

Query: 69  LEFTIKNHGISQGEKLFCCIPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSI 128
           L+   K  G++  EK F  +P   + +     L+ A +   +   +   M KM   G   
Sbjct: 112 LDLITKVRGLNSAEKFFEDLPDKMRGQPTCTALLHAYVQNNLTNKAEALMSKMSECGFLR 171

Query: 129 SYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVY 188
           S + +NR++ L  S G+ + +P +  ++K +  +P V TF++L+   A+++++E   +V 
Sbjct: 172 SPVPYNRMMSLYISNGKLEKVPKLFEELKVN-TSPDVVTFNLLLTACASENDVETAERVL 230

Query: 189 SDMKRSEVEPNEVSYCILATAH----AVARLYTVAETYVEALEKSMTGNNWSTLDVLIIL 244
             +K+++V+P+ V+Y  L   +    +V      A + ++ +EK  +         L+ L
Sbjct: 231 LQLKKAKVDPDWVTYSTLTNLYIRNASVDDCLEKAASTLKEMEKRTSRETRVAYSSLLSL 290

Query: 245 YGYLAKGKDLERIWATVQE-LPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKA 303
           +  +    ++ RIW  ++     +    YV  I +  ++   +  E L+ E +SV     
Sbjct: 291 HANMGNVDEVNRIWGKMKACFCKMSDDEYVCMISSLVKLGDFAGVENLYKEWESVSGTND 350

Query: 304 TEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALE 363
               N +++ Y   G ++ A     ++   G   +  ++  L  G  K   V+   K L 
Sbjct: 351 VRVSNLLLTSYVDQGQMEMAEIFCNQLVEKGVCLSYSSWELLTRGYLKKKDVK---KFLH 407

Query: 364 LGMKLITTKKVRSSTPWL-ETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTL 422
              K I++ K     P L +   ++I+   E+  +  AE L   L+ A +   T +YN  
Sbjct: 408 YFGKAISSVKQWIPDPRLVQEAFTVIQ---EQAHIEGAEQLLVILRNAGHVN-TNIYNLF 463

Query: 423 IKAYVKAKINDPNLLRRMILGGARPDAETYSLLKLAEQF 461
           +K Y  A      +  RM     + D ET+ LL L  + 
Sbjct: 464 LKTYAAAGKMPLVVAERMKKDNVQLDKETHRLLDLTSKM 502


>gi|225453344|ref|XP_002270492.1| PREDICTED: pentatricopeptide repeat-containing protein At1g02150
           [Vitis vinifera]
          Length = 527

 Score =  112 bits (281), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 90/363 (24%), Positives = 166/363 (45%), Gaps = 18/363 (4%)

Query: 11  GSAFQSWMREGFPVHRGEIFHSINRLRKLQLNKRALEVMEWVI-RERPYRPKELDYSYLL 69
            S    W  EG  + + E+   +  LRK +  K ALEV EW+  R   +R    D +  L
Sbjct: 75  ASVLNQWENEGKRLTKWELCRVVKELRKFKRFKMALEVYEWMNNRGERFRLSSSDAAIQL 134

Query: 70  EFTIKNHGISQGEKLFCCIPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSIS 129
           +   K  G+S  E  F  +P   +++ +Y  L+ A +   +   +   ++K+R  G++ +
Sbjct: 135 DLIAKVCGVSSAEDYFSRLPDTLKDKRIYGALLNAYVQAKMRDKAEILIEKLRNKGYATT 194

Query: 130 YLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYS 189
            L FN ++ L  +      + +++ +M    +   + +++I +   ++  + E + +V+ 
Sbjct: 195 PLPFNVMMTLYMNLKELDKVQSMISEMMNKNIQLDIYSYNIWL---SSCESTERMEQVFE 251

Query: 190 DMK-RSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYL 248
            MK    + PN  ++  +AT +     +  AE  ++ +E  +T  +      LI LYG  
Sbjct: 252 QMKLERTINPNWTTFSTMATMYIKLGQFEKAEECLKKVESRITNRDRMPYHYLISLYGST 311

Query: 249 AKGKDLERIWATVQ-ELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQY 307
               ++ R W   + + PN+ +  Y   I +  R+  +  AE+++ E  SVK        
Sbjct: 312 GNKAEVYRAWNIYKSKFPNIPNLGYHALISSLVRVGDLEGAEKIYEEWLSVKSSYDPRIG 371

Query: 308 NSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHL------------ALGCFKSNLV 355
           N ++  Y K GF++KA G L  M   G KPN+ T+  L            AL CFK  ++
Sbjct: 372 NLLLGCYVKEGFLEKAEGFLDHMIEAGGKPNSTTWEILAEGNTGVKKISDALSCFKRAVL 431

Query: 356 EEG 358
            EG
Sbjct: 432 AEG 434



 Score = 38.1 bits (87), Expect = 9.0,   Method: Compositional matrix adjust.
 Identities = 54/262 (20%), Positives = 109/262 (41%), Gaps = 24/262 (9%)

Query: 203 YCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQ 262
           Y  L  A+  A++   AE  +E L            +V++ LY  L   K+L+++ + + 
Sbjct: 163 YGALLNAYVQAKMRDKAEILIEKLRNKGYATTPLPFNVMMTLYMNL---KELDKVQSMIS 219

Query: 263 ELPNVRSKSYVLAIEAF----GRIAQVSRAEELWLEMQSVKQLKAT-EQYNSVISVYCKN 317
           E+ N   K+  L I ++           R E+++ +M+  + +      ++++ ++Y K 
Sbjct: 220 EMMN---KNIQLDIYSYNIWLSSCESTERMEQVFEQMKLERTINPNWTTFSTMATMYIKL 276

Query: 318 GFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSS 377
           G  +KA   LK++       + + Y +L      +    E ++A  +          +S 
Sbjct: 277 GQFEKAEECLKKVESRITNRDRMPYHYLISLYGSTGNKAEVYRAWNI---------YKSK 327

Query: 378 TPWLETT--LSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKI--ND 433
            P +      ++I      GD+  AE ++EE      +    + N L+  YVK       
Sbjct: 328 FPNIPNLGYHALISSLVRVGDLEGAEKIYEEWLSVKSSYDPRIGNLLLGCYVKEGFLEKA 387

Query: 434 PNLLRRMILGGARPDAETYSLL 455
              L  MI  G +P++ T+ +L
Sbjct: 388 EGFLDHMIEAGGKPNSTTWEIL 409


>gi|356503236|ref|XP_003520417.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g02150-like [Glycine max]
          Length = 555

 Score =  112 bits (281), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 103/427 (24%), Positives = 191/427 (44%), Gaps = 12/427 (2%)

Query: 4   LPRGEPVGSA--FQSWMREGFPVHRGEIFHSINRLRKLQLNKRALEVMEWVIRERP--YR 59
           L +   VGSA     W  EG  + + E+   +  LRK +   RALEV +W +  RP  +R
Sbjct: 88  LNQNPQVGSAEVLNQWENEGRHLTKWELSRVVKELRKYKRFPRALEVYDW-MNNRPERFR 146

Query: 60  PKELDYSYLLEFTIKNHGISQGEKLFCCIPKDYQNELLYNNLVIACLDKGVIKLSLEYMK 119
             E D +  L+   K  G+S  E  F  +    +++  Y  L+   +     + +     
Sbjct: 147 VSESDAAIQLDLIAKVRGVSSAEAFFLSLEDKLKDKRTYGALLNVYVHSRSKEKAESLFD 206

Query: 120 KMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDH 179
            MR  G+ I  L  N ++ L  +      +  +  +M    +   + T++I +    +  
Sbjct: 207 TMRSKGYVIHALPINVMMTLYMNLNEYAKVDMLASEMMEKNIQLDIYTYNIWLSSCGSQG 266

Query: 180 NIEGLMKVYSDMKRS-EVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTL 238
           ++E + +V+  M+R   + PN  ++  LA+ +        AE  +  +E  + G +    
Sbjct: 267 SVEKMEQVFEQMERDPTIVPNWSTFSTLASMYIRMNQNEKAEKCLRKVEGRIKGRDRIPF 326

Query: 239 DVLIILYGYLAKGKDLERIWATVQEL-PNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQS 297
             L+ LYG + K  ++ R+W T + + P + +  Y   I +  ++  +  AE+L+ E  S
Sbjct: 327 HYLLSLYGSVGKKDEVYRVWNTYKSIFPRIPNLGYHAIISSLVKLDDIEGAEKLYEEWIS 386

Query: 298 VKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEE 357
           VK        N ++  Y K    DKA    +++S +GC PN+ T+  L+ G      + E
Sbjct: 387 VKSSYDPRIGNLLMGWYVKKDDTDKALSFFEQISNDGCIPNSNTWEILSEGHIADKRISE 446

Query: 358 GFKAL-ELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYT 416
               L E  M    +K  R    +L    + +E+  E+ D+ +AE L   L+++ ++K  
Sbjct: 447 ALSCLKEAFMVAGGSKSWRPKPSYLS---AFLELCQEQNDMESAEVLIGLLRQSKFSKIK 503

Query: 417 FVYNTLI 423
            VY ++I
Sbjct: 504 -VYASII 509


>gi|125549215|gb|EAY95037.1| hypothetical protein OsI_16851 [Oryza sativa Indica Group]
          Length = 511

 Score =  112 bits (280), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 102/424 (24%), Positives = 176/424 (41%), Gaps = 7/424 (1%)

Query: 7   GEPVGSAFQSWMREGFPVHRGEIFHSINRLRKLQLNKRALEVMEWVIRERP-YRPKELDY 65
           G PVG    +W      + + E+      LRK +    AL+V +W+   R  +     D 
Sbjct: 88  GRPVGRTLGAWDEGERRLDKWELCRIARELRKFRRFNLALQVYDWMTERRDRFSLSSSDM 147

Query: 66  SYLLEFTIKNHGISQGEKLFCCIPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLG 125
           +  L+   K  G+S  E+ F  +P   +++  Y +L+       + + +    ++MR  G
Sbjct: 148 AIQLDLIAKVRGVSHAEEYFEELPDPLKDKRTYGSLLNVYAQAMMKEKTESTFEQMRKKG 207

Query: 126 HSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLM 185
            +   L FN L+         + +  ++ +M    VA  V T++I +K  A   + + + 
Sbjct: 208 FATDTLPFNVLMNFYVDAEEAEKVSILIDEMMERNVAFDVCTYNIWIKSCAAMQDADAME 267

Query: 186 KVYSDMKRSE-VEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIIL 244
           +V++ M R E V  N  +Y  LA+ H        AE  ++  EK  TG        L+ L
Sbjct: 268 QVFNQMIRDETVVANWTTYTTLASMHIKLGNSEKAEESLKEAEKRTTGREKKCFHYLMTL 327

Query: 245 YGYLAKGKDLERIWATVQE-LPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKA 303
           Y +L K +++ R+W   +   P + +  Y   + A  R+  +  AE L+ E  S      
Sbjct: 328 YSHLGKKEEVYRVWNWYKATFPTIHNLGYQEVLSALVRLGDIEGAELLYEEWASKSSSFD 387

Query: 304 TEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALE 363
            +  N +++ Y + GF+ KA   L      G  P   T+  L     K     E    LE
Sbjct: 388 PKTMNILLAWYAREGFVTKAEQTLNRFVEKGGNPKPNTWEILGTAYLKDGQSSEALSCLE 447

Query: 364 LGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLI 423
               + +  K R   P      S++  F EK D  +A+ L   L ++   +    Y +LI
Sbjct: 448 KATAVASPSKWR---PRPTNVESLLANFKEKNDAESADRLMNVL-RSRRCEENEEYKSLI 503

Query: 424 KAYV 427
             YV
Sbjct: 504 NTYV 507


>gi|20453085|gb|AAM19786.1| At1g02150/T7I23.8 [Arabidopsis thaliana]
 gi|29028736|gb|AAO64747.1| At1g02150/T7I23.8 [Arabidopsis thaliana]
          Length = 524

 Score =  112 bits (280), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 93/407 (22%), Positives = 182/407 (44%), Gaps = 12/407 (2%)

Query: 10  VGSAFQSWMREGFPVHRGEIFHSINRLRKLQLNKRALEVMEWVI-RERPYRPKELDYSYL 68
             S    W + G  + + E+   +  LRK +   +A+EV +W+  R   +R    D +  
Sbjct: 83  AASVLNQWEKAGRKLTKWELCRVVKELRKYKRANQAIEVYDWMNNRGERFRLSASDAAIQ 142

Query: 69  LEFTIKNHGISQGEKLFCCIPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSI 128
           L+   K  GI   E+ F  +P+++++  +Y +L+ A +     + +   +  MR  G+++
Sbjct: 143 LDLIGKVRGIPDAEEFFLQLPENFKDRRVYGSLLNAYVRAKSREKAEALLNTMRDKGYAL 202

Query: 129 SYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVY 188
             L FN ++ L  +      +  ++ +MK   +   + +++I +    +  ++E +  VY
Sbjct: 203 HPLPFNVMMTLYMNLREYDKVDAMVFEMKQKDIRLDIYSYNIWLSSCGSLGSVEKMELVY 262

Query: 189 SDMKRS-EVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGY 247
             MK    + PN  ++  +AT +        AE  +  +E  +TG N      L+ LYG 
Sbjct: 263 QQMKSDVSIYPNWTTFSTMATMYIKMGETEKAEDALRKVEARITGRNRIPYHYLLSLYGS 322

Query: 248 LAKGKDLERIWATVQEL-PNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQ 306
           L   K+L R+W   + + P++ +  Y   + +  R+  +  AE+++ E   VK       
Sbjct: 323 LGNKKELYRVWHVYKSVVPSIPNLGYHALVSSLVRMGDIEGAEKVYEEWLPVKSSYDPRI 382

Query: 307 YNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGM 366
            N +++ Y KN  ++ A GL   M   G KP++ T+  LA+G  +   + E    L    
Sbjct: 383 PNLLMNAYVKNDQLETAEGLFDHMVEMGGKPSSSTWEILAVGHTRKRCISEALTCLRNAF 442

Query: 367 KLITTKKVRSSTPWLETTLSIIEIFA---EKGDVGNAENLFEELKKA 410
                     S+ W    L +   F    E+ DV + E + E L+++
Sbjct: 443 ------SAEGSSNWRPKVLMLSGFFKLCEEESDVTSKEAVLELLRQS 483



 Score = 38.9 bits (89), Expect = 6.3,   Method: Compositional matrix adjust.
 Identities = 49/194 (25%), Positives = 85/194 (43%), Gaps = 16/194 (8%)

Query: 271 SYVLAIEAFGRIAQVSRAEELWLEMQS-VKQLKATEQYNSVISVYCKNGFIDKASGLLKE 329
           SY + + + G +  V + E ++ +M+S V        ++++ ++Y K G  +KA   L++
Sbjct: 241 SYNIWLSSCGSLGSVEKMELVYQQMKSDVSIYPNWTTFSTMATMYIKMGETEKAEDALRK 300

Query: 330 MSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIE 389
           +       N I Y +L L  + S     G K  EL       K V  S P L    +++ 
Sbjct: 301 VEARITGRNRIPYHYL-LSLYGS----LGNKK-ELYRVWHVYKSVVPSIPNLGYH-ALVS 353

Query: 390 IFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKINDP-----NLLRRMILGG 444
                GD+  AE ++EE      +    + N L+ AYVK   ND       L   M+  G
Sbjct: 354 SLVRMGDIEGAEKVYEEWLPVKSSYDPRIPNLLMNAYVK---NDQLETAEGLFDHMVEMG 410

Query: 445 ARPDAETYSLLKLA 458
            +P + T+ +L + 
Sbjct: 411 GKPSSSTWEILAVG 424


>gi|293336604|ref|NP_001168600.1| uncharacterized protein LOC100382384 [Zea mays]
 gi|223949449|gb|ACN28808.1| unknown [Zea mays]
          Length = 536

 Score =  112 bits (280), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 74/272 (27%), Positives = 143/272 (52%), Gaps = 3/272 (1%)

Query: 28  EIFHSINRLRKLQLNKRALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQGEKLFCC 87
           E+   + R+R+  L + +L++ E V+  R   P   D +  L+   K+ GI+  EK F  
Sbjct: 53  EVGVCVRRMRRNALYRPSLKLSE-VMARRGMNPTVSDQAIRLDLIAKSRGIAAAEKYFLD 111

Query: 88  IPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRK 147
           +P+  +  L Y  L+ +   + + + +   M+KM+ L  + + + FN L+ + +   + +
Sbjct: 112 LPETSKTHLTYGALLNSYCKELMTEKAESLMEKMKELNFAFTAMSFNSLMTMYTKVNQAE 171

Query: 148 TIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRS-EVEPNEVSYCIL 206
            +P+I++ MKAD V P V T+++ M+  A   +I G+ +V  +MKR   V P+  +Y  L
Sbjct: 172 KVPSIIQDMKADDVLPDVFTYNVWMRALAALKDIPGVERVIEEMKRDGRVAPDWTTYSNL 231

Query: 207 ATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQ-ELP 265
           A+ +  A ++  AE  ++ LEK  T N+      LI LYG      ++ R+W +++ + P
Sbjct: 232 ASIYVEAGMFEKAEAALKELEKRNTSNDIEAYQFLITLYGRTQNLVEVHRVWRSLKRDNP 291

Query: 266 NVRSKSYVLAIEAFGRIAQVSRAEELWLEMQS 297
            + + SY+  I+    +  +S AE  + E ++
Sbjct: 292 RMANMSYLNMIQVLANLKDLSAAEACFKEWEA 323


>gi|296083491|emb|CBI23460.3| unnamed protein product [Vitis vinifera]
          Length = 444

 Score =  112 bits (279), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 84/322 (26%), Positives = 161/322 (50%), Gaps = 5/322 (1%)

Query: 24  VHRGEIFHSINRLRKLQLNKRALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQGEK 83
           V + E+  ++ +LR  +    AL++ E  + +R       D +  L+   K  G++  E 
Sbjct: 52  VFKWEVGDTVKKLRDRKRFYPALKLSE-TMAKRGMNMTISDQAIYLDLITKTRGVAAAEN 110

Query: 84  LFCCIPKDYQNELLYNNLVIACLDKGVIKLSLE-YMKKMRVLGHSISYLVFNRLIILNSS 142
            F  +P+  +N L Y  L + C  K ++    E  M++M+ L   +S + +N L+ L + 
Sbjct: 111 YFIDLPETSKNHLTYGAL-LNCYCKELLTEKAEALMERMKELKLGLSSMPYNSLMTLYTK 169

Query: 143 PGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRS-EVEPNEV 201
            G+ + IP I++++K+  + P   T++I M+  A  ++I G+ +V  +MKR   V  +  
Sbjct: 170 IGQPEKIPTIIQELKSLDIMPDSYTYNIWMRALAAVNDISGVERVIEEMKRDGRVASDWT 229

Query: 202 SYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATV 261
           +Y  LA+ +  A ++  AE  ++ LEK     + +    LI LYG +    ++ R+W ++
Sbjct: 230 TYSNLASIYVDAGVFEKAEKALKELEKRNACRDLTAFQFLITLYGRIGNLLEVYRVWRSL 289

Query: 262 Q-ELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFI 320
           +   P   + SY+  I+    +  +  AE+ + E +S   +      N++I  Y K+G +
Sbjct: 290 RLAFPKTANVSYLNMIQVLVNLKDLPGAEKCFREWESGCSIYDIRVANALIGAYAKDGLL 349

Query: 321 DKASGLLKEMSMNGCKPNAITY 342
           +KA  L +     G KPNA T+
Sbjct: 350 EKAEELKEHARRRGAKPNAKTW 371


>gi|413953408|gb|AFW86057.1| hypothetical protein ZEAMMB73_674343 [Zea mays]
          Length = 596

 Score =  112 bits (279), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 74/272 (27%), Positives = 143/272 (52%), Gaps = 3/272 (1%)

Query: 28  EIFHSINRLRKLQLNKRALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQGEKLFCC 87
           E+   + R+R+  L + +L++ E V+  R   P   D +  L+   K+ GI+  EK F  
Sbjct: 113 EVGVCVRRMRRNALYRPSLKLSE-VMARRGMNPTVSDQAIRLDLIAKSRGIAAAEKYFLD 171

Query: 88  IPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRK 147
           +P+  +  L Y  L+ +   + + + +   M+KM+ L  + + + FN L+ + +   + +
Sbjct: 172 LPETSKTHLTYGALLNSYCKELMTEKAESLMEKMKELNFAFTAMSFNSLMTMYTKVNQAE 231

Query: 148 TIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRS-EVEPNEVSYCIL 206
            +P+I++ MKAD V P V T+++ M+  A   +I G+ +V  +MKR   V P+  +Y  L
Sbjct: 232 KVPSIIQDMKADDVLPDVFTYNVWMRALAALKDIPGVERVIEEMKRDGRVAPDWTTYSNL 291

Query: 207 ATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQ-ELP 265
           A+ +  A ++  AE  ++ LEK  T N+      LI LYG      ++ R+W +++ + P
Sbjct: 292 ASIYVEAGMFEKAEAALKELEKRNTSNDIEAYQFLITLYGRTQNLVEVHRVWRSLKRDNP 351

Query: 266 NVRSKSYVLAIEAFGRIAQVSRAEELWLEMQS 297
            + + SY+  I+    +  +S AE  + E ++
Sbjct: 352 RMANMSYLNMIQVLANLKDLSAAEACFKEWEA 383



 Score = 42.4 bits (98), Expect = 0.55,   Method: Compositional matrix adjust.
 Identities = 34/133 (25%), Positives = 54/133 (40%), Gaps = 1/133 (0%)

Query: 308 NSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMK 367
           N++I  Y   G +DKA  + K   M G + NA T+        K+  ++      +  MK
Sbjct: 443 NAMIKAYITEGMLDKAVAMKKRAKMRGGRLNAKTWEIFMEHYLKTGDLKMAHWCADRAMK 502

Query: 368 LITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYV 427
              +   R   P    T +++  F E  DV  AE     LKK        V+  L++ Y 
Sbjct: 503 KGHSSG-RIWVPPPAVTETLMSYFEENKDVDGAERYVGALKKVQKDLGAPVFEPLVRTYA 561

Query: 428 KAKINDPNLLRRM 440
            A    P + +R+
Sbjct: 562 AAGKKFPGMRQRL 574


>gi|242076656|ref|XP_002448264.1| hypothetical protein SORBIDRAFT_06g024190 [Sorghum bicolor]
 gi|241939447|gb|EES12592.1| hypothetical protein SORBIDRAFT_06g024190 [Sorghum bicolor]
          Length = 515

 Score =  111 bits (278), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 101/400 (25%), Positives = 165/400 (41%), Gaps = 6/400 (1%)

Query: 7   GEPVGSAFQSWMREGFPVHRGEIFHSINRLRKLQLNKRALEVMEWVIRERP-YRPKELDY 65
           G PVG    +W      + + E+      LRK +    AL+V +W+   R  +     D 
Sbjct: 92  GRPVGRTLGAWDEGERRLDKWELCRIAKELRKFRRFNLALQVYDWMTERRDRFSLSSSDM 151

Query: 66  SYLLEFTIKNHGISQGEKLFCCIPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLG 125
           +  L+   K  G+S  EK F  +P   +++  Y +L+       + + + +  ++MR  G
Sbjct: 152 AIQLDLIAKVRGVSHAEKYFDELPDAMKDKRTYGSLLNVYAQAMMKEKTEDTFEQMRKKG 211

Query: 126 HSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLM 185
            +   L  N L+      G    +  I+ +MK   V+  V T++I +K  A   + E + 
Sbjct: 212 FASDTLPCNVLMNFYVDSGEPNEVLAIIDEMKERNVSFDVCTYNIWIKSCAAKQDAEEME 271

Query: 186 KVYSDMKRSE-VEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIIL 244
           +V+S M   E V  N  +Y  LA+ +        AE  ++  EK  TG        L+ L
Sbjct: 272 RVFSQMIADESVVANWTTYTTLASMYIKLGNSEKAEECLKDAEKRTTGREKKCFHYLMTL 331

Query: 245 YGYLAKGKDLERIWATVQ-ELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKA 303
           Y +L K +++ RIW   +   P + +  Y   + A  RI  +  AE L+ E  S      
Sbjct: 332 YSHLGKKEEVYRIWNWYKATFPMIHNLGYQELLSALVRIGDIEGAELLYEEWASKSSSFD 391

Query: 304 TEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALE 363
            +  N +++ Y K G I KA   L      G  P   T+  LA    K + + E    +E
Sbjct: 392 PKTMNILLAWYAKEGLITKAEQTLNRFVEKGGNPKPNTWEILATAYMKDDKISEALSCME 451

Query: 364 LGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENL 403
              K    K      P      S++  F EK D   A+ L
Sbjct: 452 ---KATAIKSANKWKPRPTNVESLLASFKEKNDAEGADRL 488


>gi|32488964|emb|CAE04345.1| OSJNBb0038F03.9 [Oryza sativa Japonica Group]
          Length = 511

 Score =  111 bits (277), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 101/424 (23%), Positives = 175/424 (41%), Gaps = 7/424 (1%)

Query: 7   GEPVGSAFQSWMREGFPVHRGEIFHSINRLRKLQLNKRALEVMEWVIRERP-YRPKELDY 65
           G PVG    +W      + + E+      LRK +    AL+V +W+   R  +     D 
Sbjct: 88  GRPVGRTLGAWDEGERRLDKWELCRIARELRKFRRFNLALQVYDWMTERRDRFSLSSSDM 147

Query: 66  SYLLEFTIKNHGISQGEKLFCCIPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLG 125
           +  L+   K  G+S  E+ F  +P   +++  Y +L+       + + +    ++MR  G
Sbjct: 148 AIQLDLIAKVRGVSHAEEYFEELPDPLKDKRTYGSLLNVYAQAMMKEKTESTFEQMRKKG 207

Query: 126 HSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLM 185
            +   L FN L+         + +  ++ +M    VA  V T++I +K  A   + + + 
Sbjct: 208 FATDTLPFNVLMNFYVDAEEAEKVSILIDEMMERNVAFDVCTYNIWIKSCAAMQDADAME 267

Query: 186 KVYSDMKRSE-VEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIIL 244
           +V++ M R E V  N  +Y  LA+ H        AE  ++  EK  TG        L+ L
Sbjct: 268 QVFNQMIRDETVVANWTTYTTLASMHIKLGNSEKAEESLKEAEKRTTGREKKCFHYLMTL 327

Query: 245 YGYLAKGKDLERIWATVQE-LPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKA 303
           Y +L K +++ R+W   +   P + +  Y   + A  R+  +  AE L+ E  S      
Sbjct: 328 YSHLGKKEEVYRVWNWYKATFPTIHNLGYQEVLSALVRLGDIEGAELLYEEWASKSSSFD 387

Query: 304 TEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALE 363
            +  N +++ Y + GF+ KA   L      G  P   T+  L     K     E    LE
Sbjct: 388 PKTMNILLAWYAREGFVTKAEQTLNRFVEKGGNPKPNTWEILGTAYLKDGQSSEALSCLE 447

Query: 364 LGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLI 423
               + +  K R   P      S++  F EK D  +A+ L   L ++   +    Y +LI
Sbjct: 448 KATAVASPSKWR---PRPTNVESLLANFKEKNDAESADRLMNVL-RSRRCEENEEYKSLI 503

Query: 424 KAYV 427
             Y 
Sbjct: 504 NTYA 507


>gi|22165052|gb|AAM93669.1| putative leaf protein [Oryza sativa Japonica Group]
 gi|31432900|gb|AAP54476.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|125575303|gb|EAZ16587.1| hypothetical protein OsJ_32059 [Oryza sativa Japonica Group]
          Length = 545

 Score =  111 bits (277), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 110/454 (24%), Positives = 204/454 (44%), Gaps = 16/454 (3%)

Query: 9   PVGSAFQSW-MREGFPVHRGEIFHSINRLRKLQLNKRALEVMEWVIRERPYRPKELDYSY 67
           P+    + W + E  P+ + EI   I  L + +   +AL++  W+           D +Y
Sbjct: 96  PLSPVLEQWCLAEERPIAKPEIQSIIKYLCRRRRFSQALQLSMWMTERLHLHLSPGDVAY 155

Query: 68  LLEFTIKNHGISQGEKLFCCIPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHS 127
            LE   K HG+ +  + F  +P   + +  Y +L+    +   ++ + E  +KMR +G +
Sbjct: 156 RLELITKVHGLDRAVEYFDSMPDQLKQQQCYGSLLKCYAEAKCVEKAEELFEKMRGMGMA 215

Query: 128 ISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKV 187
            SY  +N ++ L    G+ + + ++ R M+   +   V T   L+       +IE + KV
Sbjct: 216 SSY-AYNVMMRLYLQDGQVERVHSMHRTMEESGIVADVFTTDTLVAAYVVAEDIEAIEKV 274

Query: 188 YSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKS----MTGNNWSTLDVLII 243
              +++++   + +++   AT   V     + E  ++A ++S       +N      L+ 
Sbjct: 275 ---LEKADTCNDLMTWHSYATIGKVLMQSGMEERALQAFQESEKKIAKKSNRVAYGFLLT 331

Query: 244 LYGYLAKGKDLERIWATVQ-ELPNVRSKS-YVLAIEAFGRIAQVSRAEELWLEMQSVKQL 301
           +Y  L    +++RIW   + ++P     S Y+  I    ++  +  AE+ + E +S    
Sbjct: 332 MYADLGMNSEVDRIWDVYKSKVPASACNSMYMCRISVLLKMNDIVGAEKAYEEWESKHVY 391

Query: 302 KATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKA 361
             +   N +++ YCK G ++KA  L+ +    G  P   T+  LA G FK   V +  KA
Sbjct: 392 HDSRLINLLLTAYCKEGLMEKAEALVDQFVKKGRTPFGNTWYKLAGGYFK---VGQASKA 448

Query: 362 LELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNT 421
            +L  K + +      TP L   L  +  FAE+ +V  AE +   L++   T    +Y+ 
Sbjct: 449 ADLTKKALASGS-NEWTPDLTNVLMSLNYFAEQKNVEAAEEMASLLQRL-ITPTRDIYHG 506

Query: 422 LIKAYVKAKINDPNLLRRMILGGARPDAETYSLL 455
           L+K YV A     +LL RM   G   D ET  +L
Sbjct: 507 LLKTYVNAGKPVSDLLDRMKKDGMEADEETEKIL 540


>gi|356555227|ref|XP_003545936.1| PREDICTED: pentatricopeptide repeat-containing protein At4g21705,
           mitochondrial-like [Glycine max]
          Length = 486

 Score =  110 bits (276), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 106/459 (23%), Positives = 199/459 (43%), Gaps = 14/459 (3%)

Query: 5   PRGEP---VGSAFQSWMREGFPVHRGEIFHSINRLRKLQLNKRALEVMEWVIRERPYRPK 61
           P G P   V      W+ +G  +   E+   I  LRK     +AL++ EW+  +      
Sbjct: 29  PLGNPNTSVVPVLDDWVFKGNKLRVAELQRIIRDLRKRSRFSQALQISEWMHNKGVCIFS 88

Query: 62  ELDYSYLLEFTIKNHGISQGEKLFCCIPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKM 121
             +Y+  L+   K HG S  E  F  +   ++    Y  L+   + +     +L +++KM
Sbjct: 89  PTEYAVHLDLIGKVHGFSSAETYFDALKDQHKTNKTYGALLNCYVRQRQTDKALSHLQKM 148

Query: 122 RVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNI 181
           + LG + S L +N ++ L ++ G+ + +P++LR+MK ++V P   ++ I +       + 
Sbjct: 149 KDLGFASSPLTYNDIMCLYTNIGQHEKVPDVLREMKQNQVLPDNFSYRICINSYGVRSDF 208

Query: 182 EGLMKVYSDMKRSEVEPNEV----SYCILATAHAVARLYTVAETYVEALEKSMTGNNWST 237
            G+ +V  +M   E +PN V    +Y I A  +  A L   A   +   E+ +   +   
Sbjct: 209 GGVERVLKEM---ETQPNIVMDWNTYSIAANFYIKAGLTRDAVCALRKSEERLDNKDGQG 265

Query: 238 LDVLIILYGYLAKGKDLERIWATVQE-LPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQ 296
            + LI LY  L    ++ RIW   +       ++ +   +E+  ++ ++  AE++  E +
Sbjct: 266 YNHLISLYAQLGLKNEVMRIWDLEKNACKRCINRDFTTLLESLVKLGELDEAEKILKEWE 325

Query: 297 SVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVE 356
           S          + VI  Y + G  +KA  +L+E+           +  +A G      +E
Sbjct: 326 SSDNCYDFGIPSIVIIGYSQKGLHEKALAMLEELQNKEKVTTPNCWSIVAGGYIHKGEME 385

Query: 357 EGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYT 416
           + FK  +  + L    K     P  +    ++    + G V +AE L   L+ A      
Sbjct: 386 KAFKCFKTALSLYVENK--GWKPNAKVIAELLRWIGDNGSVEDAEVLVSLLRNAVPVNRQ 443

Query: 417 FVYNTLIKAYVKAKINDPNLLRRMILGGARPDAETYSLL 455
            +Y+TLIK Y++      +LL RM   G   + ET  ++
Sbjct: 444 -MYHTLIKTYIRGGKEVDDLLGRMEKDGIDENKETKKII 481


>gi|449432307|ref|XP_004133941.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g02150-like [Cucumis sativus]
 gi|449525818|ref|XP_004169913.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g02150-like [Cucumis sativus]
          Length = 537

 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 95/405 (23%), Positives = 177/405 (43%), Gaps = 6/405 (1%)

Query: 11  GSAFQSWMREGFPVHRGEIFHSINRLRKLQLNKRALEVMEWVI-RERPYRPKELDYSYLL 69
            S    W  EG  + + E+   +  LRK +  +RALE+ +W+  RE  +R    D +  L
Sbjct: 87  ASVLNQWENEGKNITKWELSRVVKELRKYKRFERALEIYDWMSNREERFRLTTSDAAIQL 146

Query: 70  EFTIKNHGISQGEKLFCCIPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSIS 129
           +   K  GI   E+ F  +P   ++  +Y  L+ A       + +   ++KMR  G +  
Sbjct: 147 DLISKVRGIKSAEEYFLRLPNHLKDRRIYGALLNAYAKGRQREKAENLLEKMRTKGFTTH 206

Query: 130 YLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYS 189
            L FN ++ L  +    + + +++ +M  + +   + +++I +       + E + +VY 
Sbjct: 207 PLPFNVMMTLYMNVKEYEKVESLVSEMTENSIQLDIYSYNIWLSSCGLQGSTEKMEEVYE 266

Query: 190 DMKRSE-VEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYL 248
            MK+   +  N  ++  +AT +    L   AE  +  +E  + G +      LI LYG +
Sbjct: 267 QMKQDRTINANWTTFSTMATMYIKMGLMEKAEECLRRVESRIVGRDRIPYHYLISLYGSV 326

Query: 249 AKGKDLERIWATVQEL-PNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQY 307
              +++ R+W   + + P + +  Y   I A  R+  V  AE+++ E  +VK        
Sbjct: 327 GNKEEMYRVWNIYKNVFPTIPNLGYHAIISALIRVGDVEGAEKIYEEWLTVKSTYDPRIA 386

Query: 308 NSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMK 367
           N  I  Y K G   KA      M   G KPN+ T+  L     K   V +   AL    +
Sbjct: 387 NLFIGWYVKEGNTSKAESFFDHMVEVGGKPNSSTWEILVDRHTKEGRVSD---ALASWKE 443

Query: 368 LITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANY 412
             + +  +S  P     L+  ++  ++GD+ + E L   L++  Y
Sbjct: 444 AFSAEGSKSWRPKPYNVLAYFDLCEKEGDIASKEVLVGLLRQPKY 488



 Score = 43.5 bits (101), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 57/260 (21%), Positives = 108/260 (41%), Gaps = 17/260 (6%)

Query: 203 YCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQ 262
           Y  L  A+A  R    AE  +E +       +    +V++ LY  +   K+ E++ + V 
Sbjct: 175 YGALLNAYAKGRQREKAENLLEKMRTKGFTTHPLPFNVMMTLYMNV---KEYEKVESLVS 231

Query: 263 ELP----NVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKAT-EQYNSVISVYCKN 317
           E+      +   SY + + + G      + EE++ +M+  + + A    ++++ ++Y K 
Sbjct: 232 EMTENSIQLDIYSYNIWLSSCGLQGSTEKMEEVYEQMKQDRTINANWTTFSTMATMYIKM 291

Query: 318 GFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSS 377
           G ++KA   L+ +       + I Y +L          EE ++   +       K V  +
Sbjct: 292 GLMEKAEECLRRVESRIVGRDRIPYHYLISLYGSVGNKEEMYRVWNI------YKNVFPT 345

Query: 378 TPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKIND--PN 435
            P L    +II      GDV  AE ++EE      T    + N  I  YVK        +
Sbjct: 346 IPNL-GYHAIISALIRVGDVEGAEKIYEEWLTVKSTYDPRIANLFIGWYVKEGNTSKAES 404

Query: 436 LLRRMILGGARPDAETYSLL 455
               M+  G +P++ T+ +L
Sbjct: 405 FFDHMVEVGGKPNSSTWEIL 424


>gi|147807263|emb|CAN64166.1| hypothetical protein VITISV_006333 [Vitis vinifera]
          Length = 506

 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 110/462 (23%), Positives = 206/462 (44%), Gaps = 20/462 (4%)

Query: 5   PRGEPVGSA---FQSWMREGFPVHRGEIFHSINRLRKLQLNKRALEVMEWVIRERPYRPK 61
           P G+P  S      +W++ G  V   E+   I+ LRK +   +ALE+ EW+ ++      
Sbjct: 47  PLGDPNTSVVPELDNWVQNGNKVWVAELQRIIHDLRKRKRFSQALEISEWMSKKGICAFS 106

Query: 62  ELDYSYLLEFTIKNHGISQGEKLFCCIPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKM 121
             +++  L+   +  G    E  F  +    + +  Y  L+   + +     SL +++KM
Sbjct: 107 PTEHAVQLDLIGRVRGFLSAESYFNSLQNHDKTDKTYGALLNCYVRQRQTDKSLSHLQKM 166

Query: 122 RVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNI 181
           + +G + S L +N ++ L ++ G+ + +P++L +MK   V P   ++ I +   A   +I
Sbjct: 167 KEMGFASSPLTYNDIMCLYTNVGQHEKVPDVLTEMKQSHVYPDNFSYRICINSYAAQSDI 226

Query: 182 EGLMKVYSDMKRSEVEPNEV----SYCILATAHAVARLYTVAETYVEALEKS---MTGNN 234
           +G+ KV  +M+R   +P+ V    +Y + A  +  A L   A   +EAL+KS   +   +
Sbjct: 227 QGMEKVLKEMER---QPHIVMDWNTYAVAANFYIKAGLPDKA---IEALKKSEERLDKRD 280

Query: 235 WSTLDVLIILYGYLAKGKDLERIWATVQELPNVR-SKSYVLAIEAFGRIAQVSRAEELWL 293
               + LI LY  L    ++ R+W+  +       ++ Y+  +E+  R+ ++  AE++  
Sbjct: 281 GLGYNHLISLYASLGNKAEVLRLWSLEKSACKRNINRDYITMLESLVRLGELEEAEKVLR 340

Query: 294 EMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSN 353
           E +S          N VI  Y + G  +KA  +LKE+   G      ++  +A G     
Sbjct: 341 EWESSGNCYDFRVPNIVIIGYSEKGLFEKAEAMLKELMEKGKITTPDSWGTVASGYMDEG 400

Query: 354 LVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYT 413
            +E+  + ++  + L    K R   P       I+    +KG V + E     L+     
Sbjct: 401 EMEKAVECMKAAISLHVNNKGRK--PNSRVIAGILSWLGDKGRVEDVEAFVGSLRIV-IP 457

Query: 414 KYTFVYNTLIKAYVKAKINDPNLLRRMILGGARPDAETYSLL 455
               +Y+TLI A ++A      LL  M       D ET  +L
Sbjct: 458 MNRRMYHTLIMANIRAGKEVDGLLASMKADKIVEDEETKKIL 499


>gi|297843032|ref|XP_002889397.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297335239|gb|EFH65656.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 524

 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 105/460 (22%), Positives = 203/460 (44%), Gaps = 20/460 (4%)

Query: 7   GEPVGSAFQSWMREGFPVHRGEIFHSINRLRKLQLNKRALEVMEWVIRERPYRPKELDYS 66
           G  V      ++ EG  V + ++F     LRK + ++ ALE+ +W + +R       D++
Sbjct: 71  GGTVAETLNQFIMEGITVRKVDLFRCAKDLRKFRRHQHALEIFDW-MEKRKMTFSVSDHA 129

Query: 67  YLLEFTIKNHGISQGEKLFCCIPKDYQNELLYNNLVIAC----LDKGVIKLSLEYMKKMR 122
             L+   K  G+   E  F  +    +N       ++ C    L++G  K   E M ++ 
Sbjct: 130 IRLDLIAKAKGLEAAENYFNNLDPSAKNHQSTYGALMNCYCVELEEGKAKAHFEKMDELN 189

Query: 123 VLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIE 182
            + +S   L FN ++ +     + + +P ++  MK   ++P   T+ I M+   + ++++
Sbjct: 190 FVNNS---LPFNNMMSMYMRLSQPEKVPVLVDAMKQRGISPCGVTYSIWMQSCGSLNDLD 246

Query: 183 GLMKVYSDM-KRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVL 241
           GL K+  +M K SE +    ++  LA     A LY  AE+ ++++EK M  NN  +   L
Sbjct: 247 GLEKIIDEMGKDSEAKTTWNTFSNLAAIFTKAGLYEKAESALKSMEKKMNPNNRDSHHFL 306

Query: 242 IILYGYLAKGKDLERIWATVQEL-PNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQ 300
           I LY  ++KG ++ R+W ++++  P V + SY++ ++A  ++  +   ++++ E +S   
Sbjct: 307 ISLYAGISKGTEVYRVWESLKKARPEVNNLSYLVMLQAMSKLGDIDGIKKIFTEWESKCW 366

Query: 301 LKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFK 360
                  N  I+ Y K    ++A  +L         P +   + L +   ++   +   K
Sbjct: 367 AYDMRLANIAINTYLKGNMYEEAEKILDGAMEKSKGPFSKARQLLMIHLLENGKADLAMK 426

Query: 361 ALELGMKLITTKKVRSSTPWLETTLSIIEI-FAEKGDVGNAEN---LFEELKKANYTKYT 416
            LE  +      K   S  W    +S+  + F    DV  AE+   +    K  +    +
Sbjct: 427 HLETAVSDPAENKDEWS--WSSELVSLFFLHFKRAKDVDGAEDFCKILSNWKPVDCETMS 484

Query: 417 FVYNTLIKAYVKAKINDPNLLRRMILGGARPDAETYSLLK 456
           F    LIK Y  A+   P++  R+         E   LLK
Sbjct: 485 F----LIKTYAAAEKTCPDMRERLSQHQIEVSEEIQDLLK 520


>gi|297603118|ref|NP_001053460.2| Os04g0544400 [Oryza sativa Japonica Group]
 gi|255675659|dbj|BAF15374.2| Os04g0544400 [Oryza sativa Japonica Group]
          Length = 571

 Score =  109 bits (273), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 97/405 (23%), Positives = 168/405 (41%), Gaps = 6/405 (1%)

Query: 7   GEPVGSAFQSWMREGFPVHRGEIFHSINRLRKLQLNKRALEVMEWVIRERP-YRPKELDY 65
           G PVG    +W      + + E+      LRK +    AL+V +W+   R  +     D 
Sbjct: 88  GRPVGRTLGAWDEGERRLDKWELCRIARELRKFRRFNLALQVYDWMTERRDRFSLSSSDM 147

Query: 66  SYLLEFTIKNHGISQGEKLFCCIPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLG 125
           +  L+   K  G+S  E+ F  +P   +++  Y +L+       + + +    ++MR  G
Sbjct: 148 AIQLDLIAKVRGVSHAEEYFEELPDPLKDKRTYGSLLNVYAQAMMKEKTESTFEQMRKKG 207

Query: 126 HSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLM 185
            +   L FN L+         + +  ++ +M    VA  V T++I +K  A   + + + 
Sbjct: 208 FATDTLPFNVLMNFYVDAEEAEKVSILIDEMMERNVAFDVCTYNIWIKSCAAMQDADAME 267

Query: 186 KVYSDMKRSE-VEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIIL 244
           +V++ M R E V  N  +Y  LA+ H        AE  ++  EK  TG        L+ L
Sbjct: 268 QVFNQMIRDETVVANWTTYTTLASMHIKLGNSEKAEESLKEAEKRTTGREKKCFHYLMTL 327

Query: 245 YGYLAKGKDLERIWATVQE-LPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKA 303
           Y +L K +++ R+W   +   P + +  Y   + A  R+  +  AE L+ E  S      
Sbjct: 328 YSHLGKKEEVYRVWNWYKATFPTIHNLGYQEVLSALVRLGDIEGAELLYEEWASKSSSFD 387

Query: 304 TEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALE 363
            +  N +++ Y + GF+ KA   L      G  P   T+  L     K     E    LE
Sbjct: 388 PKTMNILLAWYAREGFVTKAEQTLNRFVEKGGNPKPNTWEILGTAYLKDGQSSEALSCLE 447

Query: 364 LGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELK 408
               + +  K R   P      S++  F EK D  +A+ L   L+
Sbjct: 448 KATAVASPSKWR---PRPTNVESLLANFKEKNDAESADRLMNVLR 489


>gi|242066836|ref|XP_002454707.1| hypothetical protein SORBIDRAFT_04g035970 [Sorghum bicolor]
 gi|241934538|gb|EES07683.1| hypothetical protein SORBIDRAFT_04g035970 [Sorghum bicolor]
          Length = 527

 Score =  109 bits (273), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 100/460 (21%), Positives = 204/460 (44%), Gaps = 7/460 (1%)

Query: 5   PRGEPVGSAFQSWMREGFPVHRGEIFHSINRLRKLQLNKRALEVMEWVIRERPYRPKELD 64
           PRG    +A   W RE   + + E+  +I  LR+ +  + ALE+  W+           D
Sbjct: 68  PRGA-AAAAIDRWARESVHISQPELRRAIAMLRRARRYEHALEIFSWMESCNSVLLSSWD 126

Query: 65  YSYLLEFTIKNHGISQGEKLFCCIPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMRVL 124
           ++  L+   K +G SQ E+ +  +      +     L+   + +  ++ +  +M +++  
Sbjct: 127 HAARLDLIAKAYGTSQAEEYYNKLQSPAARQAASFPLLHCYVTERNVQKAETFMAQLQSC 186

Query: 125 GHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGL 184
           G  +    FN ++ L  +  + +   +++  MK + +  +V ++++ M + A    +  +
Sbjct: 187 GLPVDPHSFNEIMKLYIATFQYEKALSVIDLMKRNNIPRNVLSYNLWMNVCAEVSGVAPV 246

Query: 185 MKVYSDMKRSE-VEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLII 243
             V+ +M   E VE    +YC LA       L T A+  +   E  ++         ++ 
Sbjct: 247 QSVFQEMLNDETVEVGWSTYCTLANIFRKNGLNTKAQACLRKAETKLSPTGRLGYSFVMT 306

Query: 244 LYGYLAKGKDLERIWATVQELPN-VRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLK 302
            Y  L     + R+W   + +P  + + +Y+ A+    ++  +S+AE ++   ++  +  
Sbjct: 307 CYAALNDSDGVMRLWEASKSVPGRIPAANYMTAMLCSIKVGDISQAEWIFGSWEAGCRKH 366

Query: 303 ATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKAL 362
                N ++  Y +N +I+KA  L   M   G +PN  T+  L  G  +S  +++    +
Sbjct: 367 DVRVSNVLLGAYVRNRWIEKAERLHLHMLEKGARPNYKTWEILMEGYVQSRQMDKAVGCM 426

Query: 363 ELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTL 422
           + G+ L+ +   R   P LE   +I + F E+G   +A    + L++ N T     Y +L
Sbjct: 427 KKGLSLLKSCHWR---PPLELMEAIGKHFEEQGSADDAYRYIKVLQRFNLTSLPL-YKSL 482

Query: 423 IKAYVKAKINDPNLLRRMILGGARPDAETYSLLKLAEQFQ 462
           I+AY+ A I  PN+L  +       D E   L+ LA +  
Sbjct: 483 IRAYINADIVPPNILEMIAKDQIVTDEEMDRLIILASKID 522


>gi|297743994|emb|CBI36964.3| unnamed protein product [Vitis vinifera]
          Length = 526

 Score =  109 bits (272), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 96/404 (23%), Positives = 180/404 (44%), Gaps = 6/404 (1%)

Query: 7   GEPVGSAFQSWMREGFPVHRGEIFHSINRLRKLQLNKRALEVMEWVIRERPYRPKELDYS 66
           G  V       ++EG  + + E+   I +LRK +  + ALE+M+W +  R       DY+
Sbjct: 96  GGSVADTLNEHIKEGKLIAKHELSSCIKQLRKYRQFQHALEIMDW-MENRKIFFSYADYA 154

Query: 67  YLLEFTIKNHGISQGEKLFCCIPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGH 126
             L+   K  G++  E+ F  +    +N L Y  L+     + + + +L   +KM  L  
Sbjct: 155 VRLDLLSKTKGLATAEEYFNNLSPSAKNLLTYGTLLNCYCKEKMEEKALALFEKMDELNF 214

Query: 127 SISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMK 186
           + + L FN L+ L+   G+ + +P ++ +MK   ++P   T++ILM+  A  ++IEG  +
Sbjct: 215 ASTSLTFNNLMSLHMRLGKPEMVPPLVDEMKKRSISPDTFTYNILMQSYARLNDIEGAER 274

Query: 187 VYSDMKR-SEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILY 245
           V  ++KR +E + +  +Y  LA  +  ARL+  AE  ++ LE+ M  ++      LI LY
Sbjct: 275 VLEEIKRENEDKLSWTTYSNLAAVYVNARLFEKAELALKKLEEEMGFHDRLAYHFLISLY 334

Query: 246 GYLAKGKDLERIWATVQE-LPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKAT 304
             +    ++ R+W +++   P   + SY + ++A   +  V   +  + E +S       
Sbjct: 335 AGINNLSEVNRVWNSLKSAFPKTNNMSYFIMLQALANLNDVDGLKICFEEWKSSCFSFDV 394

Query: 305 EQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALEL 364
              N  +  +     I  A  +L E       P             K   ++   K +E 
Sbjct: 395 RLANVAVRAFLGWDMIKDAESILYEAVKRSSGPFYTALDMFMAHHLKVREIDTALKYMEA 454

Query: 365 GMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELK 408
               +   + +   P  E  L+ ++ F E+ DV  AE   + LK
Sbjct: 455 AASEVKNNEWQ---PAPERVLAFLKYFEEEKDVEGAEKFCKILK 495


>gi|326531954|dbj|BAK01353.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 518

 Score =  109 bits (272), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 93/434 (21%), Positives = 195/434 (44%), Gaps = 10/434 (2%)

Query: 17  WMREGFPVHRGEIFHSINRLRKLQLNKRALEVMEWVIRERPYRPKELDYSYLLEFTIKNH 76
           W +E   V R ++  ++++LR+ +    ALE++ W+   +  +   LD++  L+   K H
Sbjct: 70  WAQERGRVSRPDLQRAVSQLRRARRYGHALEILSWMDSHKEIKLLPLDHAARLDLIAKVH 129

Query: 77  GISQGEKLFCCIPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRL 136
           G SQ E+ +  +P     E     L+   + +  ++ +  +M  ++ +G  +    FN +
Sbjct: 130 GTSQAEEYYNKLPNSASREAASFPLLHCYVAERNVQKAESFMASLQSIGLPVDPHSFNEM 189

Query: 137 IILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDM-KRSE 195
           + L  +    + + +++  MK + +  +  ++++ M    +  ++  +  V+ +M     
Sbjct: 190 MKLYVATCEYEKVFSVIDLMKRNNIPRNALSYNLWMN-ACSVSDVTSVQSVFKEMVNDGT 248

Query: 196 VEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLE 255
           +E    +YC LA       L + A   +   E  ++         ++  Y  L     + 
Sbjct: 249 IEVGWSTYCTLANIFMKHGLNSKAFACLRTAETKLSTAQRLGYSFVMTCYAALGDSDGVM 308

Query: 256 RIWATVQELPN-VRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVY 314
           R+W   + +P  + S +Y+ AI    ++  + RAE ++   +   +       N ++  Y
Sbjct: 309 RLWEASKCVPGRIPSANYMSAILCLIKVGDIDRAEWIFGSWEVECRKHDVRVSNVLLGAY 368

Query: 315 CKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKV 374
            +NG+I+KA  L   M   G +PN  T+  L  G  +S  +++   A++  + L+     
Sbjct: 369 VRNGWIEKAEKLHLHMLEKGGRPNYKTWEILMEGFVQSRQMDKAVNAMKKALSLMKGCHW 428

Query: 375 RSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKINDP 434
           R   P L    +I   F E+G+  +A    + L+K N T    +Y ++++AY+KA    P
Sbjct: 429 R---PPLRLVEAIATFFEEQGNTDDANRYIKVLQKFNLTSLP-LYKSVLRAYIKADTMLP 484

Query: 435 NLLRRMILGGARPD 448
             +  MI   AR D
Sbjct: 485 TNISEMI---ARDD 495


>gi|293332912|ref|NP_001168310.1| hypothetical protein [Zea mays]
 gi|223947377|gb|ACN27772.1| unknown [Zea mays]
 gi|414586053|tpg|DAA36624.1| TPA: hypothetical protein ZEAMMB73_688721 [Zea mays]
          Length = 513

 Score =  108 bits (269), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 106/426 (24%), Positives = 174/426 (40%), Gaps = 7/426 (1%)

Query: 7   GEPVGSAFQSWMREGFPVHRGEIFHSINRLRKLQLNKRALEVMEWVIRERPYRP-KELDY 65
           G PVG    +W      + + E+      LRK +    AL+V +W+   R   P    D 
Sbjct: 90  GRPVGRTLGAWDEGERRLDKWELCRIAKELRKFRRFNLALQVYDWMTERRDRFPLSSSDM 149

Query: 66  SYLLEFTIKNHGISQGEKLFCCIPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLG 125
           +  L+   K  G+   EK F  +P   +++  Y +L+       + + + E  ++MR  G
Sbjct: 150 AIQLDLIAKVRGVPHAEKYFDELPDAMKDKRTYGSLLNVYAQAMMKEKTEETFEQMRKKG 209

Query: 126 HSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLM 185
            +   L  N L+      G    +  I+ +MK   V+  V T++I +K  A   + E + 
Sbjct: 210 FASDTLPCNVLMNFYVDSGEPDEVLAIIDEMKERNVSFDVCTYNIWIKSCAAKQDAEEME 269

Query: 186 KVYSDMKRSE-VEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIIL 244
           +V+S M   E V  N  +Y  LA+ +        AE  ++  EK  TG        L+ L
Sbjct: 270 QVFSQMIADESVVANWTTYTTLASMYLKLGNSEKAEECLKDAEKRTTGREKKCFHYLMTL 329

Query: 245 YGYLAKGKDLERIWATVQ-ELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKA 303
           Y +L K +++ RIW   +   P + +  Y   + A  RI  +  AE L+ E  S      
Sbjct: 330 YSHLGKKEEVYRIWNWYKATFPMIHNLGYQELLSALIRIGDIEGAELLYEEWASKSYSFD 389

Query: 304 TEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALE 363
            +  N +++ Y K G I KA   +      G  P   T+  LA      + + E    +E
Sbjct: 390 PKTMNILLAWYAKEGLITKAEQTVNRFVEKGGNPKPNTWEILATAYMNDDKISEALSCME 449

Query: 364 LGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLI 423
               + +  K +     +ET L+    F EK D   A+ L   L      +    Y +LI
Sbjct: 450 KATAVKSASKWKPRPTNVETLLA---SFKEKNDAEGADRLVSVLTSRGCAE-DEEYKSLI 505

Query: 424 KAYVKA 429
             Y  A
Sbjct: 506 DTYAFA 511


>gi|22328859|ref|NP_680735.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75146702|sp|Q84JR3.1|PP334_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g21705, mitochondrial; Flags: Precursor
 gi|28393142|gb|AAO42004.1| unknown protein [Arabidopsis thaliana]
 gi|28827500|gb|AAO50594.1| unknown protein [Arabidopsis thaliana]
 gi|332659092|gb|AEE84492.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 492

 Score =  108 bits (269), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 99/458 (21%), Positives = 210/458 (45%), Gaps = 11/458 (2%)

Query: 5   PRGEPVGSAF---QSWMREGFPVHRGEIFHSINRLRKLQLNKRALEVMEWVIRERPYRPK 61
           P G+P  S +   Q+W++ G  V   E+   ++ LR+ +    ALEV +W+         
Sbjct: 33  PLGDPKSSVYPELQNWVQCGKKVSVAELIRIVHDLRRRKRFLHALEVSKWMNETGVCVFS 92

Query: 62  ELDYSYLLEFTIKNHGISQGEKLFCCIPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKM 121
             +++  L+   + +G    E+ F  + + Y+N+  Y  L+   + +  ++ SL + +KM
Sbjct: 93  PTEHAVHLDLIGRVYGFVTAEEYFENLKEQYKNDKTYGALLNCYVRQQNVEKSLLHFEKM 152

Query: 122 RVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNI 181
           + +G   S L +N ++ L ++ G+ + +P +L +MK + VAP   ++ I +      +++
Sbjct: 153 KEMGFVTSSLTYNNIMCLYTNIGQHEKVPKVLEEMKEENVAPDNYSYRICINAFGAMYDL 212

Query: 182 EGLMKVYSDM-KRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDV 240
           E +     DM +R ++  +  +Y + A  +        A   ++  E  +   +    + 
Sbjct: 213 ERIGGTLRDMERRQDITMDWNTYAVAAKFYIDGGDCDRAVELLKMSENRLEKKDGEGYNH 272

Query: 241 LIILYGYLAKGKDLERIWATVQELPNVR-SKSYVLAIEAFGRIAQVSRAEELWLEMQSVK 299
           LI LY  L K  ++ R+W   +++   R ++ Y+  +++  +I  +  AEE+  E +S  
Sbjct: 273 LITLYARLGKKIEVLRLWDLEKDVCKRRINQDYLTVLQSLVKIDALVEAEEVLTEWKSSG 332

Query: 300 QLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGF 359
                   N+VI  Y      +KA  +L++++  G      ++  +A    +   +E  F
Sbjct: 333 NCYDFRVPNTVIRGYIGKSMEEKAEAMLEDLARRGKATTPESWELVATAYAEKGTLENAF 392

Query: 360 KALELGMKL-ITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFV 418
           K ++  + + + ++K R   P L    S++    ++G +   E+    L+         +
Sbjct: 393 KCMKTALGVEVGSRKWR---PGLTLVTSVLSWVGDEGSLKEVESFVASLRNCIGVNKQ-M 448

Query: 419 YNTLIKAYVK-AKINDPNLLRRMILGGARPDAETYSLL 455
           Y+ L+KA ++    N   LL+RM       D ET  +L
Sbjct: 449 YHALVKADIREGGRNIDTLLQRMKDDKIEIDEETTVIL 486


>gi|326530906|dbj|BAK01251.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 511

 Score =  107 bits (268), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 94/391 (24%), Positives = 176/391 (45%), Gaps = 16/391 (4%)

Query: 28  EIFHSINRLRKLQLNKRALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQGEKLFCC 87
           E+   +  LRK + +++ALEV EW+  +   R    DY+  L+   + HGI   E  F  
Sbjct: 92  ELERIVKELRKRRRHRQALEVSEWMSAKGHVRFLPKDYAVHLDLIGQVHGIGAAEAYFNT 151

Query: 88  IPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRK 147
           +P   + E  Y  L+     + ++  SL + +KM+ LG   S L +N L+ L ++ G+ +
Sbjct: 152 LPDKDKTEKPYGALLNCYTRELMVDGSLAHFQKMKELGFVFSSLPYNNLMGLYTNIGQHE 211

Query: 148 TIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEV----SY 203
            +P+++ +MK   + P   ++ I +       +  G+     DM   E EP  V    +Y
Sbjct: 212 KVPSVIAEMKGSGIMPDNFSYRICINSYGTRADFFGMENTLEDM---ECEPQIVVDWNTY 268

Query: 204 CILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQE 263
            ++A+ +    L   A + ++  E  +   +  T + LI LYG L    ++ R+W    +
Sbjct: 269 AVVASNYIKGNLREKAISALKKAEAKIDIKDSDTYNHLISLYGQLGDKSEMRRLWGL--Q 326

Query: 264 LPNVR---SKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFI 320
           + N +   +K Y   +    R+ ++  AE L  E +S +        N +++ Y     +
Sbjct: 327 MSNCKRHINKDYTTMLAMLVRLDEIEEAEALLKEWESSENAFDFHVPNVLLTGYRHKDML 386

Query: 321 DKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSS-TP 379
           DKA  LL +    G  P + ++  +A+G  +     +  KA EL    +     RS   P
Sbjct: 387 DKAEALLDDFLKKGKMPPSTSWAIVAIGYAEKG---DCAKAYELIKNALCVYVPRSGWIP 443

Query: 380 WLETTLSIIEIFAEKGDVGNAENLFEELKKA 410
                  I++   ++GD+ + E   + L+ A
Sbjct: 444 RPAMIEMILKYLGDEGDLKDVETFVQLLQAA 474


>gi|18411800|ref|NP_567220.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75163252|sp|Q93WC5.1|PP300_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g01990, mitochondrial; Flags: Precursor
 gi|14517494|gb|AAK62637.1| AT4g01990/T7B11_26 [Arabidopsis thaliana]
 gi|16323354|gb|AAL15390.1| AT4g01990/T7B11_26 [Arabidopsis thaliana]
 gi|332656708|gb|AEE82108.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 502

 Score =  107 bits (268), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 107/455 (23%), Positives = 195/455 (42%), Gaps = 16/455 (3%)

Query: 7   GEPVGSAFQSWMREGFPVHRGEIFHSINRLRKLQLNKRALEVMEWVIRERPYRPKELDYS 66
           G  +      ++ EG PV + ++      LRK +  +RALE+ EW+ R+        D++
Sbjct: 53  GGKMEETLNQFVMEGVPVKKHDLIRYAKDLRKFRQPQRALEIFEWMERKEIAFTGS-DHA 111

Query: 67  YLLEFTIKNHGISQGEKLFCCIPKDYQNELLYNNLV-IACLDKGVIKLSLEYMKKMRVLG 125
             L    K+ G+   E  F  +    +N+  Y +L+   C++K  +K    + + M  L 
Sbjct: 112 IRLNLIAKSKGLEAAETYFNSLDDSIKNQSTYGSLLNCYCVEKEEVKAKAHF-ENMVDLN 170

Query: 126 HSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLM 185
           H  + L FN L+ +    G+ + +P ++  MK   + P   T+ + ++   +  +++G+ 
Sbjct: 171 HVSNSLPFNNLMAMYMGLGQPEKVPALVVAMKEKSITPCDITYSMWIQSCGSLKDLDGVE 230

Query: 186 KVYSDMK-RSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIIL 244
           KV  +MK   E   +  ++  LA  +    LY  AE  +++LE +M  +       LI L
Sbjct: 231 KVLDEMKAEGEGIFSWNTFANLAAIYIKVGLYGKAEEALKSLENNMNPDVRDCYHFLINL 290

Query: 245 YGYLAKGKDLERIWATVQE-LPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKA 303
           Y  +A   ++ R+W  +++  PNV + SY+  + A  ++  +   ++++ E +S      
Sbjct: 291 YTGIANASEVYRVWDLLKKRYPNVNNSSYLTMLRALSKLDDIDGVKKVFAEWESTCWTYD 350

Query: 304 TEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALE 363
               N  IS Y K    ++A  +    +M  CK      R L +     N         +
Sbjct: 351 MRMANVAISSYLKQNMYEEAEAVFNG-AMKKCKGQFSKARQLLMMHLLKN------DQAD 403

Query: 364 LGMKLITTKKVRSSTPWL---ETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYN 420
           L +K      +     W    E   S    F E  DV  AE   + L K +    +  Y 
Sbjct: 404 LALKHFEAAVLDQDKNWTWSSELISSFFLHFEEAKDVDGAEEFCKTLTKWSPLS-SETYT 462

Query: 421 TLIKAYVKAKINDPNLLRRMILGGARPDAETYSLL 455
            L+K Y+ A    P++ +R+   G   D E   LL
Sbjct: 463 LLMKTYLAAGKACPDMKKRLEEQGILVDEEQECLL 497


>gi|4558568|gb|AAD22661.1|AC007138_25 hypothetical protein [Arabidopsis thaliana]
 gi|7268583|emb|CAB80692.1| hypothetical protein [Arabidopsis thaliana]
          Length = 501

 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 107/455 (23%), Positives = 195/455 (42%), Gaps = 16/455 (3%)

Query: 7   GEPVGSAFQSWMREGFPVHRGEIFHSINRLRKLQLNKRALEVMEWVIRERPYRPKELDYS 66
           G  +      ++ EG PV + ++      LRK +  +RALE+ EW+ R+        D++
Sbjct: 52  GGKMEETLNQFVMEGVPVKKHDLIRYAKDLRKFRQPQRALEIFEWMERKEIAFTGS-DHA 110

Query: 67  YLLEFTIKNHGISQGEKLFCCIPKDYQNELLYNNLV-IACLDKGVIKLSLEYMKKMRVLG 125
             L    K+ G+   E  F  +    +N+  Y +L+   C++K  +K    + + M  L 
Sbjct: 111 IRLNLIAKSKGLEAAETYFNSLDDSIKNQSTYGSLLNCYCVEKEEVKAKAHF-ENMVDLN 169

Query: 126 HSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLM 185
           H  + L FN L+ +    G+ + +P ++  MK   + P   T+ + ++   +  +++G+ 
Sbjct: 170 HVSNSLPFNNLMAMYMGLGQPEKVPALVVAMKEKSITPCDITYSMWIQSCGSLKDLDGVE 229

Query: 186 KVYSDMK-RSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIIL 244
           KV  +MK   E   +  ++  LA  +    LY  AE  +++LE +M  +       LI L
Sbjct: 230 KVLDEMKAEGEGIFSWNTFANLAAIYIKVGLYGKAEEALKSLENNMNPDVRDCYHFLINL 289

Query: 245 YGYLAKGKDLERIWATVQE-LPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKA 303
           Y  +A   ++ R+W  +++  PNV + SY+  + A  ++  +   ++++ E +S      
Sbjct: 290 YTGIANASEVYRVWDLLKKRYPNVNNSSYLTMLRALSKLDDIDGVKKVFAEWESTCWTYD 349

Query: 304 TEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALE 363
               N  IS Y K    ++A  +    +M  CK      R L +     N         +
Sbjct: 350 MRMANVAISSYLKQNMYEEAEAVFNG-AMKKCKGQFSKARQLLMMHLLKN------DQAD 402

Query: 364 LGMKLITTKKVRSSTPWL---ETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYN 420
           L +K      +     W    E   S    F E  DV  AE   + L K +    +  Y 
Sbjct: 403 LALKHFEAAVLDQDKNWTWSSELISSFFLHFEEAKDVDGAEEFCKTLTKWSPLS-SETYT 461

Query: 421 TLIKAYVKAKINDPNLLRRMILGGARPDAETYSLL 455
            L+K Y+ A    P++ +R+   G   D E   LL
Sbjct: 462 LLMKTYLAAGKACPDMKKRLEEQGILVDEEQECLL 496


>gi|413953409|gb|AFW86058.1| hypothetical protein ZEAMMB73_674343 [Zea mays]
          Length = 626

 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 69/252 (27%), Positives = 131/252 (51%), Gaps = 2/252 (0%)

Query: 48  VMEWVIRERPYRPKELDYSYLLEFTIKNHGISQGEKLFCCIPKDYQNELLYNNLVIACLD 107
           V+  V+  R   P   D +  L+   K+ GI+  EK F  +P+  +  L Y  L+ +   
Sbjct: 162 VLSEVMARRGMNPTVSDQAIRLDLIAKSRGIAAAEKYFLDLPETSKTHLTYGALLNSYCK 221

Query: 108 KGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVST 167
           + + + +   M+KM+ L  + + + FN L+ + +   + + +P+I++ MKAD V P V T
Sbjct: 222 ELMTEKAESLMEKMKELNFAFTAMSFNSLMTMYTKVNQAEKVPSIIQDMKADDVLPDVFT 281

Query: 168 FHILMKIEANDHNIEGLMKVYSDMKRS-EVEPNEVSYCILATAHAVARLYTVAETYVEAL 226
           +++ M+  A   +I G+ +V  +MKR   V P+  +Y  LA+ +  A ++  AE  ++ L
Sbjct: 282 YNVWMRALAALKDIPGVERVIEEMKRDGRVAPDWTTYSNLASIYVEAGMFEKAEAALKEL 341

Query: 227 EKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQ-ELPNVRSKSYVLAIEAFGRIAQV 285
           EK  T N+      LI LYG      ++ R+W +++ + P + + SY+  I+    +  +
Sbjct: 342 EKRNTSNDIEAYQFLITLYGRTQNLVEVHRVWRSLKRDNPRMANMSYLNMIQVLANLKDL 401

Query: 286 SRAEELWLEMQS 297
           S AE  + E ++
Sbjct: 402 SAAEACFKEWEA 413



 Score = 42.0 bits (97), Expect = 0.60,   Method: Compositional matrix adjust.
 Identities = 34/133 (25%), Positives = 54/133 (40%), Gaps = 1/133 (0%)

Query: 308 NSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMK 367
           N++I  Y   G +DKA  + K   M G + NA T+        K+  ++      +  MK
Sbjct: 473 NAMIKAYITEGMLDKAVAMKKRAKMRGGRLNAKTWEIFMEHYLKTGDLKMAHWCADRAMK 532

Query: 368 LITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYV 427
              +   R   P    T +++  F E  DV  AE     LKK        V+  L++ Y 
Sbjct: 533 KGHSSG-RIWVPPPAVTETLMSYFEENKDVDGAERYVGALKKVQKDLGAPVFEPLVRTYA 591

Query: 428 KAKINDPNLLRRM 440
            A    P + +R+
Sbjct: 592 AAGKKFPGMRQRL 604


>gi|302794005|ref|XP_002978767.1| hypothetical protein SELMODRAFT_109632 [Selaginella moellendorffii]
 gi|300153576|gb|EFJ20214.1| hypothetical protein SELMODRAFT_109632 [Selaginella moellendorffii]
          Length = 521

 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 98/427 (22%), Positives = 185/427 (43%), Gaps = 29/427 (6%)

Query: 44  RALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQGEKLF------CCIPKDYQNELL 97
           R  ++ EWV++   +RP    Y+ L++   K+  I   EK F       C+P +    +L
Sbjct: 86  RVTQMCEWVLQGTAFRPDLGCYNLLIDAYGKSLNIEDAEKTFNRMQEALCVPNEETFGVL 145

Query: 98  YNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMK 157
            N   +A    G  + + E   +M+  G+S   L  N  + +       +    + R ++
Sbjct: 146 INGYRLA----GSFEKAEELFVQMQKRGYSPGPLACNTFLHVLEDAKEYRRAEALFRDLE 201

Query: 158 ADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYT 217
             +  P++ T++ ++ I            +Y  M+R+   PN  ++  L  A A   LY 
Sbjct: 202 KYECEPNIDTYNRMIVIYGKAGEPSKAEMLYRSMRRAMCPPNICTFTALMNAFARQGLYR 261

Query: 218 VAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQE---LPNVRSKSYVL 274
            AE Y + L++     +    + L+  Y           I+ T+Q     P+  + S+ +
Sbjct: 262 EAERYFDKLQEFDYKPDHYAYNALMEAYSQGGSPAGALEIFQTMQRNGCFPD--TVSHNI 319

Query: 275 AIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNG 334
            I A+GR      AE+++  MQS       +    ++S Y + G +++A  L+  M  +G
Sbjct: 320 LINAYGRAGLYEDAEKIFKSMQSAGFSPNLKSNMLLLSAYARAGRVEEAEELVSAMERDG 379

Query: 335 CKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSST----PWLETTLSIIEI 390
            KP+ + Y  L        +   G       M+ +  K V+SS+    P + T  ++I++
Sbjct: 380 TKPDTLIYNAL--------INAYGVSGRHEDMEALLAKMVKSSSKQTKPDIGTYNTLIQV 431

Query: 391 FAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKI--NDPNLLRRMILGGARPD 448
           +A+ G +  AE LF+ L +         +  L+  Y K K+     ++L++M+  G R D
Sbjct: 432 YAQAGFIPKAEELFQGLARLKLVPDATTWTALMGGYAKKKLYRKCTSILKKMLESGCRAD 491

Query: 449 AETYSLL 455
           A T  +L
Sbjct: 492 AVTARVL 498



 Score = 79.7 bits (195), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 64/281 (22%), Positives = 126/281 (44%), Gaps = 8/281 (2%)

Query: 87  CIPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRR 146
           C P    N   +  L+ A   +G+ + +  Y  K++   +   +  +N L+   S  G  
Sbjct: 240 CPP----NICTFTALMNAFARQGLYREAERYFDKLQEFDYKPDHYAYNALMEAYSQGGSP 295

Query: 147 KTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCIL 206
                I + M+ +   P   + +IL+         E   K++  M+ +   PN  S  +L
Sbjct: 296 AGALEIFQTMQRNGCFPDTVSHNILINAYGRAGLYEDAEKIFKSMQSAGFSPNLKSNMLL 355

Query: 207 ATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPN 266
            +A+A A     AE  V A+E+  T  +    + LI  YG   + +D+E + A + +  +
Sbjct: 356 LSAYARAGRVEEAEELVSAMERDGTKPDTLIYNALINAYGVSGRHEDMEALLAKMVKSSS 415

Query: 267 VRSK----SYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDK 322
            ++K    +Y   I+ + +   + +AEEL+  +  +K +     + +++  Y K     K
Sbjct: 416 KQTKPDIGTYNTLIQVYAQAGFIPKAEELFQGLARLKLVPDATTWTALMGGYAKKKLYRK 475

Query: 323 ASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALE 363
            + +LK+M  +GC+ +A+T R L   C     VE+  + +E
Sbjct: 476 CTSILKKMLESGCRADAVTARVLFSACRSPEQVEQVTQLME 516


>gi|302826107|ref|XP_002994593.1| hypothetical protein SELMODRAFT_138846 [Selaginella moellendorffii]
 gi|300137364|gb|EFJ04344.1| hypothetical protein SELMODRAFT_138846 [Selaginella moellendorffii]
          Length = 521

 Score =  107 bits (267), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 98/427 (22%), Positives = 185/427 (43%), Gaps = 29/427 (6%)

Query: 44  RALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQGEKLF------CCIPKDYQNELL 97
           R  ++ EWV++   +RP    Y+ L++   K+  I   EK F       C+P +    +L
Sbjct: 86  RVTQMCEWVLQGTTFRPDLGCYNLLIDAYGKSLNIEDAEKTFNRMQEALCVPNEETFGVL 145

Query: 98  YNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMK 157
            N   +A    G  + + E   +M+  G+S   L  N  + +       +    + R ++
Sbjct: 146 INGYRLA----GSFEKAEELFVQMQKRGYSPGPLACNTFLHVLEDAKEYRRAEALFRDLE 201

Query: 158 ADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYT 217
             +  P++ T++ ++ I            +Y  M+R+   PN  ++  L  A A   LY 
Sbjct: 202 KYECEPNIDTYNRMIVIYGKAGEPSKAEMLYRSMRRAMCPPNICTFTALMNAFARQGLYR 261

Query: 218 VAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQE---LPNVRSKSYVL 274
            AE Y + L++     +    + L+  Y           I+ T+Q     P+  + S+ +
Sbjct: 262 EAERYFDKLQEFDYKPDHYAYNALMEAYSQGGSPAGALEIFQTMQRNGCFPD--TVSHNI 319

Query: 275 AIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNG 334
            I A+GR      AE+++  MQS       +    ++S Y + G +++A  L+  M  +G
Sbjct: 320 LINAYGRAGLYEDAEKIFKSMQSAGFSPNLKSNMLLLSAYARAGRVEEAEELVSAMERDG 379

Query: 335 CKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSST----PWLETTLSIIEI 390
            KP+ + Y  L        +   G       M+ +  K V+SS+    P + T  ++I++
Sbjct: 380 TKPDTLIYNSL--------INAYGVSGRHEDMEALLAKMVKSSSKQTKPDIGTYNTLIQV 431

Query: 391 FAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKI--NDPNLLRRMILGGARPD 448
           +A+ G +  AE LF+ L +         +  L+  Y K K+     ++L++M+  G R D
Sbjct: 432 YAQAGFIPRAEELFQGLARLKLVPDATTWTALMGGYAKKKLYRKCTSILKKMLESGCRAD 491

Query: 449 AETYSLL 455
           A T  +L
Sbjct: 492 AVTARVL 498



 Score = 80.9 bits (198), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 65/281 (23%), Positives = 126/281 (44%), Gaps = 8/281 (2%)

Query: 87  CIPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRR 146
           C P    N   +  L+ A   +G+ + +  Y  K++   +   +  +N L+   S  G  
Sbjct: 240 CPP----NICTFTALMNAFARQGLYREAERYFDKLQEFDYKPDHYAYNALMEAYSQGGSP 295

Query: 147 KTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCIL 206
                I + M+ +   P   + +IL+         E   K++  M+ +   PN  S  +L
Sbjct: 296 AGALEIFQTMQRNGCFPDTVSHNILINAYGRAGLYEDAEKIFKSMQSAGFSPNLKSNMLL 355

Query: 207 ATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPN 266
            +A+A A     AE  V A+E+  T  +    + LI  YG   + +D+E + A + +  +
Sbjct: 356 LSAYARAGRVEEAEELVSAMERDGTKPDTLIYNSLINAYGVSGRHEDMEALLAKMVKSSS 415

Query: 267 VRSK----SYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDK 322
            ++K    +Y   I+ + +   + RAEEL+  +  +K +     + +++  Y K     K
Sbjct: 416 KQTKPDIGTYNTLIQVYAQAGFIPRAEELFQGLARLKLVPDATTWTALMGGYAKKKLYRK 475

Query: 323 ASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALE 363
            + +LK+M  +GC+ +A+T R L   C     VE+  + +E
Sbjct: 476 CTSILKKMLESGCRADAVTARVLFSACRSPEQVEQVTQLME 516


>gi|224141193|ref|XP_002323959.1| predicted protein [Populus trichocarpa]
 gi|222866961|gb|EEF04092.1| predicted protein [Populus trichocarpa]
          Length = 355

 Score =  107 bits (267), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 74/299 (24%), Positives = 148/299 (49%), Gaps = 11/299 (3%)

Query: 3   RLPRGEPVGSAFQSWMREGFPVHRGEIFHSINRLRKLQLNKRALEVMEWVIRERPYRPKE 62
           RLP+   V +    W+REG  V   E+ H    LRK Q  K ALE+ EW++    +   +
Sbjct: 18  RLPK-RSVTNVIDKWVREGNTVSSSELRHISKELRKSQRFKHALEISEWMVAHEEFELSD 76

Query: 63  LDYSYLLEFTIKNHGISQGEKLFCCIPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMR 122
            D++  ++   K  G+   E+ F  +P   +    Y  L+ +     +I+ + E+ K+++
Sbjct: 77  TDHASRIDLMTKVFGVDAAERYFDGLPLAAKTTETYTALLHSYAAAKLIEKAEEFYKRIK 136

Query: 123 VLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIE 182
                 + L++N ++ L  S G+ + +  ++ ++K  KVAP + T+++ +   A   NI+
Sbjct: 137 GSNLPFTALMYNEMMTLYMSVGQLEKVSQVVEELKHQKVAPDIFTYNLWISSCAAALNID 196

Query: 183 GLMKVYSDMKR-SEVEPNEVSYCILATAHAVARLYTVAETYVEAL---EKSMTGNNWSTL 238
            + ++  +M + S V  + + Y  +   +  A     AE+   A+   EK +T   W T 
Sbjct: 197 KVRRILDEMSQDSGVNDDWMRYIKIVNIYVTAGHLVNAESSTAAVVEAEKKITQREWITY 256

Query: 239 DVLIILYGYLAKGKDLERIWATVQELPNVR--SKSYVLAIEAF---GRIAQVSRAEELW 292
           D L+ILY  L K   +++IW +++ + N +  S+++V  + ++   G + +V    + W
Sbjct: 257 DFLVILYAGLGKKDKIDQIWKSLR-MTNQKMTSRNFVCILSSYLMLGHLKEVGEIVDQW 314


>gi|115482784|ref|NP_001064985.1| Os10g0501300 [Oryza sativa Japonica Group]
 gi|22165054|gb|AAM93671.1| putative leaf protein [Oryza sativa Japonica Group]
 gi|31432901|gb|AAP54477.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|113639594|dbj|BAF26899.1| Os10g0501300 [Oryza sativa Japonica Group]
          Length = 513

 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 111/449 (24%), Positives = 199/449 (44%), Gaps = 19/449 (4%)

Query: 15  QSWMREGFPVHRGEIFHSINRLRKLQLNKRALEVMEWVIRERPYRPKELDYSYLLEFTIK 74
           Q W+ E  PV + E+   +  LR+     +ALE+  W+   R       D +Y LE   K
Sbjct: 71  QWWLAEERPVSKPELQSLVKYLRRRCRFSQALELSMWMTERRHLHLSPGDVAYRLELISK 130

Query: 75  NHGISQGEKLFCCIPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFN 134
            HG+ +  + F  +P   +    Y +L+    +   ++ + E  + MR +G + SY  +N
Sbjct: 131 VHGLDKAVEYFDAVPNQLRELQCYGSLLRCYAEAERVEKAEELFENMRGMGMANSY-AYN 189

Query: 135 RLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRS 194
            ++ L S  G+ + + ++ + M+   + P + T   L+   A+  ++E + KV      +
Sbjct: 190 AMMNLYSQIGQVERVDSMYKAMEEGGIVPDIFTIDNLVSAYADVEDVEAIEKVLEKASCN 249

Query: 195 EVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTG--NNWSTLDVLIILYGYLAKGK 252
            +     S+ I+      A +   A    +  EK +T   +       L+ +Y  L    
Sbjct: 250 NLMSWH-SFAIVGKVFMKAGMQERALQAFQESEKRITARKDGRVAYGFLLTMYADLQMDS 308

Query: 253 DLERIWATVQ-ELPNVRSKS-YVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSV 310
           +++RIW   + ++P     + Y+  I    ++  +  AE+ + E +S      +   N +
Sbjct: 309 EVDRIWDVYRSKVPASACNTMYMCRISVLLKMNDIVGAEKAYEEWESKHVYHDSRLINIL 368

Query: 311 ISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLIT 370
           ++ YCK G ++KA  L+ +    G    + T+  LA G FK   V    KA +L  K + 
Sbjct: 369 LTAYCKEGLMEKAEALVDQFIKKGRTLFSNTWYKLAGGYFKVGQVS---KAADLTKKALA 425

Query: 371 TKKVRSSTPW---LETTLSIIEIFAEKGDVGNAENLFEELKK-ANYTKYTFVYNTLIKAY 426
           +    +S  W   L   L  I  FAE+ +V  AE +   L++    T+   VY+ L+K Y
Sbjct: 426 S----ASNEWKPDLANVLMSINYFAEQKNVEAAEEMASLLQRLVPLTR--DVYHGLLKTY 479

Query: 427 VKAKINDPNLLRRMILGGARPDAETYSLL 455
           V A     +LL RM   G   D ET  +L
Sbjct: 480 VNAGEPASDLLDRMKKDGIEADEETDKIL 508


>gi|359483464|ref|XP_003632962.1| PREDICTED: pentatricopeptide repeat-containing protein At4g21705,
           mitochondrial-like [Vitis vinifera]
          Length = 506

 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 107/462 (23%), Positives = 204/462 (44%), Gaps = 20/462 (4%)

Query: 5   PRGEPVGSA---FQSWMREGFPVHRGEIFHSINRLRKLQLNKRALEVMEWVIRERPYRPK 61
           P G+P  S      +W++ G  V   E+   I+ LRK +   +ALE+ EW+ ++      
Sbjct: 47  PLGDPNTSVVPELDNWVQNGNKVWVAELQRIIHDLRKRKRFSQALEISEWMSKKGICAFS 106

Query: 62  ELDYSYLLEFTIKNHGISQGEKLFCCIPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKM 121
             +++  L+   +  G    E  F  +    + +  Y  L+   + +     SL +++KM
Sbjct: 107 PTEHAVQLDLIGRVRGFLSAESYFNSLQNHDKTDKTYGALLNCYVRQRQTDKSLSHLQKM 166

Query: 122 RVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNI 181
           + +G + S L +N ++ L ++ G+ + +P++L +MK   V P   ++ I +       +I
Sbjct: 167 KEMGFASSPLTYNDIMCLYTNVGQHEKVPDVLTEMKQSNVYPDNFSYRICINSYGAQSDI 226

Query: 182 EGLMKVYSDMKRSEVEPNEV----SYCILATAHAVARLYTVAETYVEALEKS---MTGNN 234
           +G+  V  +M+R   +P+ V    +Y + A  +  A L    +  +EAL+KS   +   +
Sbjct: 227 QGMENVLKEMER---QPHIVMDWNTYAVAANFYIKAGL---PDKAIEALKKSEERLDKRD 280

Query: 235 WSTLDVLIILYGYLAKGKDLERIWATVQELPNVR-SKSYVLAIEAFGRIAQVSRAEELWL 293
               + LI LY  L    ++ R+W+  +       ++ Y+  +E+  R+ ++  AE++  
Sbjct: 281 GLGYNHLISLYASLGNKAEVLRLWSLEKSACKRNINRDYITMLESLVRLGELEEAEKVLR 340

Query: 294 EMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSN 353
           E +S          N VI  Y + G  +KA  +LKE+   G      ++  +A G     
Sbjct: 341 EWESSGNCYDFRVPNIVIIGYSEKGLFEKAEAMLKELMEKGKITTPNSWGTVASGYMDEG 400

Query: 354 LVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYT 413
            +E+  + ++  + L    K R   P       I+    +KG V + E     L+     
Sbjct: 401 EMEKAVECMKAAISLHVNNKGRK--PNSRVIAGILSWLGDKGRVEDVEAFVGSLRIV-IP 457

Query: 414 KYTFVYNTLIKAYVKAKINDPNLLRRMILGGARPDAETYSLL 455
               +Y+TLI A ++A      LL  M       D ET  +L
Sbjct: 458 MNRRMYHTLIMANIRAGKEVDGLLASMKADKIVEDEETKKIL 499


>gi|218195308|gb|EEC77735.1| hypothetical protein OsI_16848 [Oryza sativa Indica Group]
          Length = 1300

 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 96/401 (23%), Positives = 166/401 (41%), Gaps = 6/401 (1%)

Query: 7   GEPVGSAFQSWMREGFPVHRGEIFHSINRLRKLQLNKRALEVMEWVIRERP-YRPKELDY 65
           G PVG    +W      + + E+      LRK +    AL+V +W+   R  +     D 
Sbjct: 88  GRPVGRTLGAWDEGERRLDKWELCRIARELRKFRRFNLALQVYDWMTERRDRFSLSSSDM 147

Query: 66  SYLLEFTIKNHGISQGEKLFCCIPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLG 125
           +  L+   K  G+S  E+ F  +P   +++  Y +L+       + + +    ++MR  G
Sbjct: 148 AIQLDLIAKVRGVSHAEEYFEELPDPLKDKRTYGSLLNVYAQAMMKEKTESTFEQMRKKG 207

Query: 126 HSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLM 185
            +   L FN L+         + +  ++ +M    VA  V T++I +K  A   + + + 
Sbjct: 208 FATDTLPFNVLMNFYVDAEEAEKVSILIDEMMERNVAFDVCTYNIWIKSCAAMQDADAME 267

Query: 186 KVYSDMKRSE-VEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIIL 244
           +V++ M R E V  N  +Y  LA+ H        AE  ++  EK  TG        L+ L
Sbjct: 268 QVFNQMIRDETVVANWTTYTTLASMHIKLGNSEKAEESLKEAEKRTTGREKKCFHYLMTL 327

Query: 245 YGYLAKGKDLERIWATVQE-LPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKA 303
           Y +L K +++ R+W   +   P + +  Y   + A  R+  +  AE L+ E  S      
Sbjct: 328 YSHLGKKEEVYRVWNWYKATFPTIHNLGYQEVLSALVRLGDIEGAELLYEEWASKSSSFD 387

Query: 304 TEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALE 363
            +  N +++ Y + GF+ KA   L      G  P   T+  L     K     E    LE
Sbjct: 388 PKTMNILLAWYAREGFVTKAEQTLNRFVEKGGNPKPNTWEILGTAYLKDGQSSEALSCLE 447

Query: 364 LGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLF 404
               + +  K R   P      S++  F EK D  +A+ L 
Sbjct: 448 KATAVASPSKWR---PRPTNVESLLANFKEKNDAESADRLM 485


>gi|224125490|ref|XP_002329818.1| predicted protein [Populus trichocarpa]
 gi|222870880|gb|EEF08011.1| predicted protein [Populus trichocarpa]
          Length = 494

 Score =  106 bits (265), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 106/469 (22%), Positives = 209/469 (44%), Gaps = 29/469 (6%)

Query: 9   PVGSA------FQSWMREGFPVHRGEIFHSINRLRKLQLNKRALEVMEWVIRERP--YRP 60
           P+GS         SW++ G  V   E+   I+  R  +    AL+V EW+ ++    + P
Sbjct: 38  PLGSTPSLEPELDSWIQNGKKVKVAELQRIIHDFRMRKRFTHALQVSEWMNKKGICIFSP 97

Query: 61  KELDYSYLLEFTIKNHGISQGEKLFCCIPKDYQNELLYNNLVIACLDKGVIKLSLEYMKK 120
            +  ++  L+   + HG    E  F  +    +NE  Y  L+   + K     S+ +++K
Sbjct: 98  SQ--HAVQLDLIGRVHGFVSAENYFNNLRDQDKNEKTYGALLNCYVQKRETDKSISHLQK 155

Query: 121 MRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHN 180
           M+ +G + S L +N ++ L ++ G+ + +P +L +MK + V+P   ++ + M       +
Sbjct: 156 MKEMGFAKSSLSYNDIMCLYTNVGQHEKVPQVLNEMKENNVSPDNFSYRLCMNSYGARGD 215

Query: 181 IEGLMKVYSDMKRSEVEPNEV----SYCILATAHAVARLYTVAETYVEALEKSMTGNNWS 236
           +EG+ K+ ++M   E +P+ V    SY + A+++    L   A   ++  E  +   + +
Sbjct: 216 LEGMEKMLNEM---EHQPDIVVDWNSYAVAASSYIKGGLTDKAIDSLKKSETRLDKKDGT 272

Query: 237 TLDVLIILYGYLAKGKDLERIW---ATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWL 293
             + LI LY  L +  ++ R+W    +  E P   +K Y+  + +  ++ +    E++  
Sbjct: 273 GYNHLISLYATLGEKTEVLRLWDLEKSTCERP--INKDYINIMASLVKLDEFEEVEKVLK 330

Query: 294 EMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSN 353
           E ++          N++I  Y   G  +KA  LL+ ++  G       +  +A G F  N
Sbjct: 331 EWEASGNFYDVRVPNTLIIGYSGKGLYEKAKALLENLTEKGKATLPNIWGKVAAGFFDKN 390

Query: 354 LVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAEN--LFEELKKAN 411
            V + F  ++  + L    K      W      I  I +  GD G+AE+   F    K  
Sbjct: 391 EVAKAFSCMKAALCLYEENK-----EWKPNQKVITGILSWLGDEGSAEDAEAFVSSLKNV 445

Query: 412 YTKYTFVYNTLIKAYVKAKINDPNLLRRMILGGARPDAETYSLLKLAEQ 460
                 +Y+ ++KA+++A      LL  M     + D ET  +L + ++
Sbjct: 446 IPMNREMYHAVLKAHIRAGKEVHGLLDGMKTCKIKEDEETKKILSMMQK 494


>gi|449431834|ref|XP_004133705.1| PREDICTED: pentatricopeptide repeat-containing protein At4g21705,
           mitochondrial-like [Cucumis sativus]
 gi|449478158|ref|XP_004155237.1| PREDICTED: pentatricopeptide repeat-containing protein At4g21705,
           mitochondrial-like [Cucumis sativus]
          Length = 492

 Score =  106 bits (265), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 86/379 (22%), Positives = 178/379 (46%), Gaps = 5/379 (1%)

Query: 5   PRGEP---VGSAFQSWMREGFPVHRGEIFHSINRLRKLQLNKRALEVMEWVIRERPYRPK 61
           P G+P   V      W+ EG  +   E+   +  LR  +  ++ALEV EW+  +  +   
Sbjct: 54  PLGDPECTVVPVLNQWIEEGRNIKDFELRRIVRDLRTCRRYRQALEVSEWMCSKGLFSLT 113

Query: 62  ELDYSYLLEFTIKNHGISQGEKLFCCIPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKM 121
             D++  L+   +  G+   EK F  +    +   LY  L+   + +G+I  SL +M+KM
Sbjct: 114 TRDFAIQLDLIGQVRGLDSAEKYFGSVSNQKEIGKLYGALLNCYVREGLIDKSLAHMQKM 173

Query: 122 RVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNI 181
           + +G + S L +N ++ L  + G+   +PN+L +MK + V P   ++ I +       ++
Sbjct: 174 KEMGLASSPLCYNDIMCLYLNTGQADKVPNVLSEMKENGVLPDNFSYRICISSYGARSDV 233

Query: 182 EGLMKVYSDMK-RSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDV 240
             +  V  +M+ ++ +  +  +Y ++A     A ++  A  Y+   E  +  +     + 
Sbjct: 234 ISMENVLKEMEGQTHISMDWTTYSMVAGFFIKAGMHDKAMNYLRKCEDKVDEDALG-FNH 292

Query: 241 LIILYGYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQ 300
           LI  Y  L    ++ R+WA +++     ++ Y+  + +  ++  +  AE L +E +S  Q
Sbjct: 293 LISHYTNLGHKNEVMRLWALLKKGKKQLNRDYITMLGSLVKLELLEEAENLVMEWESSCQ 352

Query: 301 LKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFK 360
                  N V+  Y + G I+KA  +L+ + +NG  P+  ++  +A G  +   +E+ F+
Sbjct: 353 CYDFRVPNVVLIGYSQKGLIEKAEKMLRNIIVNGMIPSPNSWGIIASGYLEKQNLEKAFE 412

Query: 361 ALELGMKLITTKKVRSSTP 379
            ++  + +    KV    P
Sbjct: 413 CMKEALAVKGQNKVWRPKP 431


>gi|224138182|ref|XP_002322750.1| predicted protein [Populus trichocarpa]
 gi|222867380|gb|EEF04511.1| predicted protein [Populus trichocarpa]
          Length = 516

 Score =  106 bits (265), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 98/403 (24%), Positives = 179/403 (44%), Gaps = 14/403 (3%)

Query: 14  FQSWMREGFPVHRGEIFHSINRLRKLQLNKRALEVMEWVIRERPYRPKELDYSYLLEFTI 73
              W++EG  +    I   I  LR+ +    ALE+  W+  +R         +  L+   
Sbjct: 66  LDKWIQEGETIWEDLIHALIKELRQYRRYHHALEISMWMTDKRYLALTSRAVAVRLDLIS 125

Query: 74  KNHGISQGEKLFCCIPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVF 133
           K HGI Q E  F  IP   +    Y  L+        ++ +   M++MR LG +   LVF
Sbjct: 126 KVHGIEQVENYFNNIPTKLKGLESYGALLNCYAYVKSVEKAEAVMQRMRELGFARKPLVF 185

Query: 134 NRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKR 193
             ++ L    G  + +  ++R+M+ + ++     + I +   A   + EGL K    +KR
Sbjct: 186 TVMLNLYYKTGNTEKLDPLMREMEENGISFDKFAYCIRLSSYAAASDSEGLEKT---LKR 242

Query: 194 SEVEPNEV----SYCILATAHAVARLYTVAETYVEALEKSMTGNNWST-LDVLIILYGYL 248
            E +PN V    +Y  +A  ++   L   A   ++  E+ +TG   ST  D L+  Y   
Sbjct: 243 IESDPNVVLDWATYATVANGYSKVGLLDKALEMLKRCERLITGERRSTPYDYLMTQYATT 302

Query: 249 AKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYN 308
              +D+ R+W   +    V ++  +  I +  +   +  AE+++ E +S K        N
Sbjct: 303 GTKEDVLRVWELHKRY--VGNRKNISVITSLLKFDDLESAEKIFEEWESQKLCDDIIIPN 360

Query: 309 SVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKL 368
            ++  Y + G ++KA  LL+    NG KPNA T+  LA G  + N   +  +A++  + L
Sbjct: 361 FLVDAYSRKGLLEKAEMLLQRTMSNGTKPNANTWYLLAKGYLQHNQTPKAVEAMKEMIVL 420

Query: 369 ITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKAN 411
              +   S+  W    ++ ++   + GD+ NAE     L++ +
Sbjct: 421 SGPRSRPSTVSW----VACLQHLKDSGDMDNAEGFINLLREKD 459



 Score = 43.5 bits (101), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 39/153 (25%), Positives = 70/153 (45%), Gaps = 15/153 (9%)

Query: 307 YNSVISVYCKNGFIDKASGLLK--EMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALEL 364
           Y +V + Y K G +DKA  +LK  E  + G +  +  Y +L      +   E+  +  EL
Sbjct: 256 YATVANGYSKVGLLDKALEMLKRCERLITGER-RSTPYDYLMTQYATTGTKEDVLRVWEL 314

Query: 365 GMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIK 424
             + +  +K           +S+I    +  D+ +AE +FEE +         + N L+ 
Sbjct: 315 HKRYVGNRK----------NISVITSLLKFDDLESAEKIFEEWESQKLCDDIIIPNFLVD 364

Query: 425 AYVKAKINDPN--LLRRMILGGARPDAETYSLL 455
           AY +  + +    LL+R +  G +P+A T+ LL
Sbjct: 365 AYSRKGLLEKAEMLLQRTMSNGTKPNANTWYLL 397


>gi|357137419|ref|XP_003570298.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g27460-like [Brachypodium distachyon]
          Length = 513

 Score =  106 bits (265), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 95/438 (21%), Positives = 193/438 (44%), Gaps = 14/438 (3%)

Query: 5   PRGEPVGSAFQSWMREGFPVHRGEIFHSINRLRKLQLNKRALEVMEWVIRERPYRPKELD 64
           PRG  V +A + W +E   V R ++  ++++LR+ +    ALE++ W+   +      LD
Sbjct: 53  PRGSAVAAAIERWAQERGHVSRPDLRRAVSQLRRARRYDHALEILSWMDSRKDLNLSPLD 112

Query: 65  YSYLLEFTIKNHGISQGEKLFCCIPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMRVL 124
           ++  L+   K HG    E+ +  +      E     L+   + +  ++ +  +M  ++ +
Sbjct: 113 HAARLDLIAKVHGTCHAEEYYKKLRNAACREAASFPLLHCYVAERNVQKAESFMASLQSI 172

Query: 125 GHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGL 184
           G  +    FN ++ L  +  + +    ++  MK   +  +V ++++ M    N  ++ G+
Sbjct: 173 GLPVDPHSFNEMLKLYVATCQFEKALAVIDLMKRSNIPRNVLSYNLWM----NACSVLGV 228

Query: 185 MKVYSDMKR----SEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDV 240
             V S  K       VE    ++C LA       L + A   +   E  ++         
Sbjct: 229 ASVQSVFKEMVNDGTVEVGWSTFCTLANIFIKHGLNSKALACLRTAETKLSPRQRLGYSF 288

Query: 241 LIILYGYLAKGKDLERIWATVQELPN-VRSKSYVLAIEAFGRIAQVSRAEELWLEMQS-V 298
           ++  Y  L     + R+W   + +P  + S +Y+  I    ++  +++AE ++   ++  
Sbjct: 289 VMTCYARLDDSDGVMRLWEASKSVPGRIPSANYMSTIICSIKVGDIAQAEWIFGSWEAEC 348

Query: 299 KQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEG 358
            +       N ++  Y +NG+I+KA  L   M   G  PN  T+  L  G  +S  +++ 
Sbjct: 349 GRKNDVRVSNVLLGAYVRNGWIEKAERLHLHMLEKGAHPNYKTWEILLEGFVQSRQMDKA 408

Query: 359 FKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFV 418
             A++  + L  +   R   P LE   +I   F E G+V +A    + L+K N T     
Sbjct: 409 VNAIKKALSLSKSCHWR---PPLELVEAIATFFEEHGNVDDANRYIKVLQKFNLTSLPL- 464

Query: 419 YNTLIKAYVKAKINDPNL 436
           Y ++++AY+KA    PN+
Sbjct: 465 YKSVLRAYIKADAVPPNI 482


>gi|356525847|ref|XP_003531533.1| PREDICTED: pentatricopeptide repeat-containing protein At5g09450,
           mitochondrial-like [Glycine max]
          Length = 395

 Score =  106 bits (264), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 76/297 (25%), Positives = 142/297 (47%), Gaps = 9/297 (3%)

Query: 3   RLPRGEPVGSAFQSWMREGFPVHRGEIFHSINRLRKLQLNKRALEVMEWVIRERPYRPKE 62
           RLP+     +  Q W+ +G PV   ++      LR+ Q  K ALE+ EW++    Y   +
Sbjct: 55  RLPK-RSATNVLQKWVLQGNPVTLSQLRDISKELRRSQRYKHALEISEWMVSHEEYELSD 113

Query: 63  LDYSYLLEFTIKNHGISQGEKLFCCIPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMR 122
            DY+  ++ T K  GI   E+ F  +P   +    Y  L+ +     + K + E  ++++
Sbjct: 114 SDYAARIDLTTKVFGIDAAERYFEGLPLATKTAETYTALLHSYAGAKLTKKAEELYQRIK 173

Query: 123 VLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIE 182
               S   L +N ++ L  S G+ + +P+++ ++K  KV+P + T+++ +   A   NI+
Sbjct: 174 DSNLSFDALTYNEMMTLYMSVGQFEKVPSVVEELKQQKVSPDIFTYNLWISYCAAILNID 233

Query: 183 GLMKVYSDMKRSEVEPNE--VSYCILATAH-AVARLYTVAETYVEALEKSMTGNNWSTLD 239
            + ++  +M       NE  + Y  LA  + +V  L   +   +   EK +T   W T D
Sbjct: 234 EVRRILDEMSHG-AGSNESWIRYLNLANIYISVGHLDNASSNTLVETEKRITQRQWITYD 292

Query: 240 VLIILYGYLAKGKDLERIWATVQELPN-VRSKSYVLAIEAF---GRIAQVSRAEELW 292
            LIILYG L     L++IW +++     + S++Y+  I ++   G   +V    + W
Sbjct: 293 FLIILYGGLGSKDKLDQIWNSLRMTKQKMISRNYICIISSYLMLGHTKEVGEVIDQW 349


>gi|357446577|ref|XP_003593564.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355482612|gb|AES63815.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 495

 Score =  106 bits (264), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 100/456 (21%), Positives = 205/456 (44%), Gaps = 12/456 (2%)

Query: 10  VGSAFQSWMREGFPVHRGEIFHSINRLRKLQLNKRALEVMEWVIRERPYRPKELDYSYLL 69
           V      W+ +G  V  GE+   +  LRK     +AL+V EW+ +        ++++  L
Sbjct: 44  VAPQLDDWVYKGNKVSVGELQRIVRDLRKRSRFTQALQVSEWMNKIGVCIFSPVEHAVHL 103

Query: 70  EFTIKNHGISQGEKLFCCIPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSIS 129
           + T + HG    E  F  +    +NE  +  L+   + +  +  SL ++KKM+ LG ++S
Sbjct: 104 DLTGRVHGFYAAETYFNSLKDIERNEKTHGALLNCYVRQRQVDKSLSHLKKMKELGFALS 163

Query: 130 YLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYS 189
            L +N ++ L ++ G+ + + ++  +MK + V P   ++ I +       +I+G+  +  
Sbjct: 164 SLTYNNIMCLYTNIGQHEKVSDVFNEMKENHVLPDNFSYRICIGSYGVRSDIDGMNAILK 223

Query: 190 DMKRSEVEPNEV----SYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILY 245
           +M   E +P+ V    +Y ++A  +  A L + A   +   EK +   +    + LI LY
Sbjct: 224 EM---ESQPHIVMDWNTYSVVANFYIKAELSSEAIDALRKCEKRLDDKDGEGYNHLISLY 280

Query: 246 GYLAKGKDLERIWATVQE-LPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKAT 304
             L K  ++ R+W   +       ++ ++  +E+  ++ +   A+++  E +        
Sbjct: 281 ARLGKKNEVLRLWDMEKSACKRCLNRDFITMLESLVKLEEFDEADKILKEWEFSGNCYDY 340

Query: 305 EQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALEL 364
              N V+  Y +  F +KA  +L+++       +  ++  +A        +E+  + L+ 
Sbjct: 341 GVPNVVVVGYSEKDFPEKAEAILQDIWKKRKYTDTSSWILVADRYLLKGEMEKALECLKT 400

Query: 365 GMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIK 424
            + L    K R   P      SI     +   V +AE L   LKK  + K   +Y++L+K
Sbjct: 401 AVCLYPENKKRK--PNHRVISSIYSWIGDNASVEDAEALVRLLKK--FQKNRHMYHSLLK 456

Query: 425 AYVKAKINDPNLLRRMILGGARPDAETYSLLKLAEQ 460
           AYV+A      +L RM         +T  ++K+ ++
Sbjct: 457 AYVRADKEVDGVLDRMKEDNIDETGKTAEIVKMKKE 492


>gi|15217734|ref|NP_171739.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75173342|sp|Q9FZ24.1|PPR4_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g02370, mitochondrial; Flags: Precursor
 gi|9857533|gb|AAG00888.1|AC064879_6 Hypothetical protein [Arabidopsis thaliana]
 gi|332189300|gb|AEE27421.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 537

 Score =  105 bits (263), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 100/460 (21%), Positives = 204/460 (44%), Gaps = 20/460 (4%)

Query: 7   GEPVGSAFQSWMREGFPVHRGEIFHSINRLRKLQLNKRALEVMEWVIRERPYRPKELDYS 66
           G  V      ++ EG  V + ++F     LRK +  + A E+ +W + +R       D++
Sbjct: 84  GGTVAETLNQFIMEGITVRKDDLFRCAKTLRKFRRPQHAFEIFDW-MEKRKMTFSVSDHA 142

Query: 67  YLLEFTIKNHGISQGEKLFCCIPKDYQNELLYNNLVIAC----LDKGVIKLSLEYMKKMR 122
             L+   K  G+   E  F  +    +N       ++ C    L++   K   E M ++ 
Sbjct: 143 ICLDLIGKTKGLEAAENYFNNLDPSAKNHQSTYGALMNCYCVELEEEKAKAHFEIMDELN 202

Query: 123 VLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIE 182
            + +S   L FN ++ +     + + +P ++  MK   ++P   T+ I M+   + ++++
Sbjct: 203 FVNNS---LPFNNMMSMYMRLSQPEKVPVLVDAMKQRGISPCGVTYSIWMQSCGSLNDLD 259

Query: 183 GLMKVYSDM-KRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVL 241
           GL K+  +M K SE +    ++  LA  +  A LY  A++ ++++E+ M  NN  +   L
Sbjct: 260 GLEKIIDEMGKDSEAKTTWNTFSNLAAIYTKAGLYEKADSALKSMEEKMNPNNRDSHHFL 319

Query: 242 IILYGYLAKGKDLERIWATVQEL-PNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQ 300
           + LY  ++KG ++ R+W ++++  P V + SY++ ++A  ++  +   ++++ E +S   
Sbjct: 320 MSLYAGISKGPEVYRVWESLKKARPEVNNLSYLVMLQAMSKLGDLDGIKKIFTEWESKCW 379

Query: 301 LKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFK 360
                  N  I+ Y K    ++A  +L         P +   + L +   +++  +   K
Sbjct: 380 AYDMRLANIAINTYLKGNMYEEAEKILDGAMKKSKGPFSKARQLLMIHLLENDKADLAMK 439

Query: 361 ALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKG-DVGNAEN---LFEELKKANYTKYT 416
            LE  +    + + +    W    +S+  +  EK  DV  AE+   +    K  +    T
Sbjct: 440 HLEAAVS--DSAENKDEWGWSSELVSLFFLHFEKAKDVDGAEDFCKILSNWKPLDSETMT 497

Query: 417 FVYNTLIKAYVKAKINDPNLLRRMILGGARPDAETYSLLK 456
           F    LIK Y  A+   P++  R+         E   LLK
Sbjct: 498 F----LIKTYAAAEKTSPDMRERLSQQQIEVSEEIQDLLK 533


>gi|224138178|ref|XP_002322749.1| predicted protein [Populus trichocarpa]
 gi|222867379|gb|EEF04510.1| predicted protein [Populus trichocarpa]
          Length = 505

 Score =  105 bits (263), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 97/398 (24%), Positives = 176/398 (44%), Gaps = 13/398 (3%)

Query: 17  WMREGFPVHRGEIFHSINRLRKLQLNKRALEVMEWVIRERPYRPKELDYSYLLEFTIKNH 76
           W+ EG PV++ ++   I  LR  +    ALE+  W+     +     D +  L+   K H
Sbjct: 82  WVLEGQPVNKNQLREFIKELRFHKRYAHALEISTWMTDSGYFELASQDVAVQLDLISKVH 141

Query: 77  GISQGEKLFCCIPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRL 136
           GI Q +KLF   P+  +   +Y+ L+       +++ +   +++M+ LG + + LV+N +
Sbjct: 142 GIEQAQKLFNNTPQHLKVLKVYSALLNCYAKAKLVEKAESVVQEMKSLGFANTLLVYNVI 201

Query: 137 IILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEV 196
           +      G    I +++++M+ + +        I +   A+  +I G+ K  + M   E 
Sbjct: 202 LNFYYQTGNPDKINSLMQEMEQNGIGCDKFAHSIQLSAYASVSDIVGIEKTLAKM---ES 258

Query: 197 EPNE----VSYCILATAHAVARLYTVAETYVEALEKSMTGNNWST-LDVLIILYGYLAKG 251
           +PN      SY   A  +    L   A   +E  E+ +TG    T  D LI LY    K 
Sbjct: 259 DPNVFLDWTSYTAAAKGYIKVGLVDKALEMLEKSERLVTGKRRGTAYDSLITLYAATGKT 318

Query: 252 KDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQ-SVKQLKATEQYNSV 310
            ++ RIW   ++   V  ++Y+  I +  ++     AE+++ E +            N +
Sbjct: 319 NEVLRIWELYKKNEKVYKEAYISIITSLLKLDDFENAEKIFEEWEFQNHSCYDIHIPNFL 378

Query: 311 ISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLIT 370
           I  Y + G ++KA  L+      G +PNA T+ HLA G  ++    +  KA+E  MK   
Sbjct: 379 IDAYSRKGLVEKAETLIDRAISKGGEPNAKTWYHLATGYLQNG---QTLKAVE-AMKKAV 434

Query: 371 TKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELK 408
               R   P  E   + +     +GD+G   N  + L+
Sbjct: 435 VVSGRMWKPSNEILANCLGYLKVEGDLGKLTNFMDLLR 472



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 58/250 (23%), Positives = 95/250 (38%), Gaps = 67/250 (26%)

Query: 270 KSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKE 329
           K Y   +  + +   V +AE +  EM+S+        YN +++ Y + G  DK + L++E
Sbjct: 161 KVYSALLNCYAKAKLVEKAESVVQEMKSLGFANTLLVYNVILNFYYQTGNPDKINSLMQE 220

Query: 330 MSMNG--------------------------------CKPNAI----TYRHLALGCFKSN 353
           M  NG                                  PN      +Y   A G  K  
Sbjct: 221 MEQNGIGCDKFAHSIQLSAYASVSDIVGIEKTLAKMESDPNVFLDWTSYTAAAKGYIKVG 280

Query: 354 LVEEGFKALELGMKLITTKKVRSSTPWL----------------------------ETTL 385
           LV++  + LE   +L+T K+  ++   L                            E  +
Sbjct: 281 LVDKALEMLEKSERLVTGKRRGTAYDSLITLYAATGKTNEVLRIWELYKKNEKVYKEAYI 340

Query: 386 SIIEIFAEKGDVGNAENLFEELKKANYTKYTF-VYNTLIKAYVKAKINDP--NLLRRMIL 442
           SII    +  D  NAE +FEE +  N++ Y   + N LI AY +  + +    L+ R I 
Sbjct: 341 SIITSLLKLDDFENAEKIFEEWEFQNHSCYDIHIPNFLIDAYSRKGLVEKAETLIDRAIS 400

Query: 443 GGARPDAETY 452
            G  P+A+T+
Sbjct: 401 KGGEPNAKTW 410


>gi|357142115|ref|XP_003572464.1| PREDICTED: pentatricopeptide repeat-containing protein At4g01990,
           mitochondrial-like [Brachypodium distachyon]
          Length = 546

 Score =  105 bits (262), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 95/444 (21%), Positives = 193/444 (43%), Gaps = 11/444 (2%)

Query: 1   IERLPRGEPVG---SAFQSWMREGFPVHRGEIFHSINRLRKLQLNKRALEVMEWVIRERP 57
           +  LP   P+G   +    W+RE  P+   ++F  + +LR  +  KRALE+M+W +  R 
Sbjct: 89  LSTLPPDAPLGCLAAELDQWLRERRPLSEQQLFSYVRKLRSYRHYKRALELMDW-MEARG 147

Query: 58  YRPKELDYSYLLEFTIKNHGISQGEKLFCCIPKDYQNELLYNNLVIACLDKGVIKLSLEY 117
              +   ++  L    K +G+   E+ F  +P+ +++   Y++L+    +       LE 
Sbjct: 148 ASLQLGHHAVRLGLVCKVNGLEAAEEYFWSLPEMFKSIKTYSSLLNCYAEHRKADKGLEL 207

Query: 118 MKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEAN 177
            +KM+ +  + S LV+N L+ L     + + IP    QM+ + V     T+++L +    
Sbjct: 208 FEKMKAMNITPSTLVYNNLMDLYLKTDQPEKIPTTFEQMRENHVRTDSFTYYMLTQSYIM 267

Query: 178 DHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWST 237
            ++++   K   ++++S   P  + Y +LA  +     +  A   ++  E+ M  +  S 
Sbjct: 268 VNDLKSAEKFVEELEKSTPVPWSL-YTVLANNYNKLAQFDKAVLALKKAEEVMDRSEISA 326

Query: 238 LDVLIILYGYLAKGKDLERIWATVQE-LPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQ 296
              L+ LY       +++R+W +++       ++SY++ + A  ++      ++L+ E +
Sbjct: 327 WHNLLSLYASSGNSSEVKRVWESLKSAFTKCINRSYLVMLSALKKLDDFDSLQQLFQEWE 386

Query: 297 SVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVE 356
           S  +       N +I  Y      D+A   L++ +M     N  T+    +   + +   
Sbjct: 387 STHERYDMRITNVMIEAYLAKDMTDEAEA-LRQTAMAKGHSNVTTFYIFVVSYLEKSRTS 445

Query: 357 EGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYT 416
           E         K++   K  +  P  E     ++ F E  DV   E  +E LKK       
Sbjct: 446 EALDIWRDAEKMV---KTPNWVPPKELVTRFLKHFEEAKDVDGMEAFWEHLKKLGCLDAE 502

Query: 417 FVYNTLIKAYVKAKINDPNLLRRM 440
             Y  LI+ Y  A   + ++ RR+
Sbjct: 503 -AYGALIRTYAAAGRTNTSISRRI 525


>gi|302789381|ref|XP_002976459.1| hypothetical protein SELMODRAFT_416459 [Selaginella moellendorffii]
 gi|300156089|gb|EFJ22719.1| hypothetical protein SELMODRAFT_416459 [Selaginella moellendorffii]
          Length = 509

 Score =  105 bits (262), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 99/469 (21%), Positives = 214/469 (45%), Gaps = 34/469 (7%)

Query: 13  AFQSWMREGFPVHRGEIFHSINRLRKLQLNKRALEVMEWVIRERPYRPKELDYSY----- 67
           A + W+REG  V    +   + RLR  +   +AL  ++WV  E     K + + Y     
Sbjct: 51  AIKQWIREGNSVTSCGLDRVVRRLRSRKRYLQALMAVDWVANE-----KVIPFGYHETLQ 105

Query: 68  LLEFTIKNHGISQGEKLFCCIPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHS 127
            L+   + H +++   LF  +PK ++ E  Y  L+     + +++ + + M+++R +G  
Sbjct: 106 RLDLCSRCHHVTRTLLLFRRLPKQWRGEDAYCILLEMYYKRDMLEDAEKTMQELRGIGIK 165

Query: 128 ISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKI-EANDHNIEGLMK 186
            S   ++ ++      G       ++ ++K   +A   S + IL+   ++   ++  +  
Sbjct: 166 -SLQPYHLMLSFYKLRGMEMRFERMVTEIKGSGLALDRSFYTILLAARDSFGGDMVAVED 224

Query: 187 VYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNW----STLDVLI 242
           V ++M+   ++ + V    +A  +  + L   +E  ++ LEKS+    +    S    ++
Sbjct: 225 VLAEMEGRGLKLDAVGCLAVAGIYLRSGLRHKSERVLQRLEKSLKSGEFKYSNSIRRRML 284

Query: 243 ILYGYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLK 302
            ++G L     ++RIW +++   +   + ++  IEAFGR+ ++  AE++++ +       
Sbjct: 285 AMFGKLGDRDAVDRIWHSIERSASTTVEDFIFGIEAFGRVGKMDEAEDMYMRVGC--NSC 342

Query: 303 ATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKAL 362
               +N+ ++V  + G + +A  L++ M    C  + +TY HL        L++   KA 
Sbjct: 343 NPRLHNAFLAVLVEQGDVIRAVALVERMKGVRCLLSTVTY-HL--------LIKVYLKAG 393

Query: 363 ELGMKLITTKKVRSS-------TPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKY 415
           ++    +  + +RS+        P  ET   ++E F   GDV  +E L ++  +  +   
Sbjct: 394 DVSRATLAFESLRSAFGKLEWPRPSSETLAVMLEFFVGTGDVQASERLVKKWMEDGFPLS 453

Query: 416 TFVYNTLIKAYVKAKINDPNLLRRMILGGARPDAETYSLLKLAEQFQKK 464
             V+++L++ Y K      N   RM+  G  P  ET  LL+    F ++
Sbjct: 454 AAVFHSLVRVYAKGGAGVDNFPGRMLSAGVEPTRETEQLLRQISTFLRE 502


>gi|449479000|ref|XP_004155477.1| PREDICTED: pentatricopeptide repeat-containing protein At2g20710,
           mitochondrial-like [Cucumis sativus]
          Length = 493

 Score =  105 bits (261), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 88/357 (24%), Positives = 160/357 (44%), Gaps = 11/357 (3%)

Query: 7   GEPVGS---AFQSWMREGFPVHRGEIFHSINRLRKLQLNKRALEVMEWVIRERPYRPKEL 63
           G+P  S       W+ EG  V + ++   I +LRK     +AL++ EWV  ER       
Sbjct: 46  GDPRTSIVRVLDQWVEEGRQVKQSDLQTLIKQLRKFGRFNQALQLCEWVRNERNQCLSTG 105

Query: 64  DYSYLLEFTIKNHGISQGEKLFCCIPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMRV 123
           D +  L    K  G+ Q EK F  I +  ++  +Y  L+   ++   +K +   M+KMR 
Sbjct: 106 DIAVELHLISKARGLEQAEKYFSSIGESSRDHKVYGALLHCYVENKNLKKAEAIMQKMRE 165

Query: 124 LGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEG 183
           +G   + L +N ++ L +  G+ + +  +L++M+   + P   T++I M   A   +I  
Sbjct: 166 VGFMKTPLSYNAMLNLYAHLGKHEKLAELLKEMEEMGIGPDRFTYNIRMNAYAAASDITN 225

Query: 184 LMKVYSDMKRSE-VEPNEVSYCILATAHAVARLYTVAETYVEALEKS--MTGN--NWSTL 238
           + K+ S M+    V  +  +Y ++   +  A L   +E  +  L+K+    G+   W   
Sbjct: 226 MEKLLSKMEADPLVATDWHTYFVVGNGYFKAGL---SENSILMLKKAEQFIGDKQKWLAY 282

Query: 239 DVLIILYGYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSV 298
             L+ LY  +    ++ R+W     L    +  Y+  I +  ++  +  AE +  E +S 
Sbjct: 283 QYLMTLYAAIGNKDEVYRVWNLYTNLRKRFNSGYLCIISSLMKLDDIDGAERILKEWESG 342

Query: 299 KQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLV 355
                    N +I+ YC  GF+DKA   +  +   G +P A T+  LA G   + L 
Sbjct: 343 DTSFDFRIPNMMINSYCMKGFVDKAEAYINRLIETGKEPEANTWDLLASGYHSNGLT 399


>gi|195613552|gb|ACG28606.1| tetratricopeptide-like helical [Zea mays]
 gi|414870858|tpg|DAA49415.1| TPA: tetratricopeptide-like helical [Zea mays]
          Length = 517

 Score =  104 bits (260), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 109/459 (23%), Positives = 194/459 (42%), Gaps = 28/459 (6%)

Query: 9   PVGSAFQSWMREGFPVHRGEIFHSINRLRKLQLNKRALEVMEWVIRERPYRPKELDYSYL 68
           P+    + W +EG    +  I   + +L  L+    ALE+  W+   R       D +Y 
Sbjct: 55  PLSPVLEQWNQEGHTAKKFVIQAIVKKLVGLRRFAHALELSFWMTDRRHLHLSVGDVAYR 114

Query: 69  LEFTIKNHGISQGEKLFCCIPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSI 128
           L+   K HG+ +  + F  +PK  +    Y +L+   ++   +  + E+  KM+ +G + 
Sbjct: 115 LDLISKVHGLEKAVEYFGMVPKQLRKPQCYGSLLKCYVEAKAVDKAEEHFAKMQEMGMTS 174

Query: 129 SYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVY 188
           SY  +  ++ L    G+ + +  + + M+   V P   +   ++       +++G+ KV 
Sbjct: 175 SY-AYTWMMKLYLQTGQLERVHAMFQDMEEKGVKPDTFSVEAMLAAYIAAEDVQGVGKVL 233

Query: 189 SDMKRSEVEPNE--VSYCILATAHAV----ARLYTVAETYVEALEKSMTGNNWSTLDVLI 242
                 +  P+E  V++   A+A ++              VEA  +    ++      L+
Sbjct: 234 -----DKANPHEKLVTWHGHASAASLFMKSGMQVGAVMALVEAERRISPKSSRIAYAFLL 288

Query: 243 ILYGYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVK-QL 301
             Y  L    +  RIW+  +      +  Y+  + A  R   +  AE    E ++V  + 
Sbjct: 289 KTYTELGMHAEAGRIWSVYKSKVPPCNTMYMSRLSALLRTNDIDGAEATLKEWETVPLRY 348

Query: 302 KATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKA 361
                 N ++  YC+ G ++KA  L+      G  P A T+  LA G FK+  V E    
Sbjct: 349 HDFRLINVMVDAYCREGLVEKAVALVDGAIKKGRTPYANTWYKLAGGFFKTGQVPEAVD- 407

Query: 362 LELGMKLITTKKVRSST-PW---LETTLSIIEIFAEKGDVGNAENLFEELKK-ANYTKYT 416
                  +T K + S+T PW   L   L  +  F ++ DVG AE +   L+K    T+  
Sbjct: 408 -------MTRKALDSATPPWRPDLANVLMSLNHFVDQKDVGAAEEMVSTLQKLVPLTR-- 458

Query: 417 FVYNTLIKAYVKAKINDPNLLRRMILGGARPDAETYSLL 455
            VY+ L+K YV+A     +LL RM   G   D ET  +L
Sbjct: 459 DVYHCLLKTYVRAGKPPSDLLERMKEDGLEADEETERIL 497


>gi|255571041|ref|XP_002526471.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223534146|gb|EEF35862.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 533

 Score =  104 bits (260), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 85/361 (23%), Positives = 165/361 (45%), Gaps = 21/361 (5%)

Query: 19  REGFPVHRGEIFHSINRLRKLQLNKRALEVMEWVI-RERPYRPKELDYSYLLEFTIKNHG 77
           ++G  + + E+   +  LRK + +K+ALEV +W+  RE  +R    D +  L+   K  G
Sbjct: 94  KDGKKLTKWELCRVVKELRKYKRHKQALEVYDWMNNREERFRLSASDAAIQLDLVAKVRG 153

Query: 78  ISQGEKLFCCIPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLI 137
           +S  E  F  +  + ++  +Y  L+ + +   + + +   ++KMR   ++   L FN ++
Sbjct: 154 VSSAEDYFMRLSDNVKDRRVYGALLNSYVKARMREKAESLIEKMRKKDYTTHALPFNVMM 213

Query: 138 ILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMK-RSEV 196
            L  +      +  ++ +M A  +   + +++I +    +  +IE + +VY  MK  S +
Sbjct: 214 TLYMNLKEYDKVDMMISEMMAKNIRLDIYSYNIWLSSRGSQGSIERMEEVYEQMKLDSTI 273

Query: 197 EPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLER 256
            PN  ++  +AT +        AE  +  +E  +TG +      L+ LYG +   +++ R
Sbjct: 274 NPNWTTFSTMATMYIKMGQLEKAEDCLRRVESRITGRDRIPYHYLLSLYGNVGNKEEIYR 333

Query: 257 IW----ATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVIS 312
           +W    +    +PN+    Y   I +  R+  +  AE+++ E   VK        N ++ 
Sbjct: 334 VWNIYKSIFATIPNL---GYHAIISSLVRMDDIEGAEKIYEEWLPVKSSYDPRIGNLLMG 390

Query: 313 VYCKNGFIDKASGLLKEMSMNGCKPNAITYRHL------------ALGCFKSNLVEEGFK 360
            Y + G +DKA      M   G KPN+ T+  L            AL CFK   + +G K
Sbjct: 391 WYVRGGNLDKAESFFDHMMEVGGKPNSSTWEILADGHTREKRISEALSCFKEAFLAQGSK 450

Query: 361 A 361
           +
Sbjct: 451 S 451


>gi|17529324|gb|AAL38889.1| unknown protein [Arabidopsis thaliana]
          Length = 537

 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 99/460 (21%), Positives = 204/460 (44%), Gaps = 20/460 (4%)

Query: 7   GEPVGSAFQSWMREGFPVHRGEIFHSINRLRKLQLNKRALEVMEWVIRERPYRPKELDYS 66
           G  V      ++ EG  V + ++F     LRK +  + A E+ +W + +R       D++
Sbjct: 84  GGTVAETLNQFIMEGITVRKDDLFRCAKTLRKFRRPQHAFEIFDW-MEKRKMTFSVSDHA 142

Query: 67  YLLEFTIKNHGISQGEKLFCCIPKDYQNELLYNNLVIAC----LDKGVIKLSLEYMKKMR 122
             L+   K  G+   E  F  +    +N       ++ C    L++   K   E M ++ 
Sbjct: 143 ICLDLIGKTKGLEAAENYFNNLDPSAKNHQSTYGALMNCYCVELEEEKAKAHFEIMDELN 202

Query: 123 VLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIE 182
            + +S   L FN ++ +     + + +P ++  +K   ++P   T+ I M+   + ++++
Sbjct: 203 FVNNS---LPFNNMMSMYMRLSQPEKVPVLVDAIKQRGISPCGVTYSIWMQSCGSLNDLD 259

Query: 183 GLMKVYSDM-KRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVL 241
           GL K+  +M K SE +    ++  LA  +  A LY  A++ ++++E+ M  NN  +   L
Sbjct: 260 GLEKIIDEMGKDSEAKTTWNTFSNLAAIYTKAGLYEKADSALKSMEEKMNPNNRDSHHFL 319

Query: 242 IILYGYLAKGKDLERIWATVQEL-PNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQ 300
           + LY  ++KG ++ R+W ++++  P V + SY++ ++A  ++  +   ++++ E +S   
Sbjct: 320 MSLYAGISKGPEVYRVWESLKKARPEVNNLSYLVMLQAMSKLGDLDGIKKIFTEWESKCW 379

Query: 301 LKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFK 360
                  N  I+ Y K    ++A  +L         P +   + L +   +++  +   K
Sbjct: 380 AYDMRLANIAINTYLKGNMYEEAEKILDGAMKKSKGPFSKARQLLMIHLLENDKADLAMK 439

Query: 361 ALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKG-DVGNAEN---LFEELKKANYTKYT 416
            LE  +    + + +    W    +S+  +  EK  DV  AE+   +    K  +    T
Sbjct: 440 HLEAAVS--DSAENKDEWGWSSELVSLFFLHFEKAKDVDGAEDFCKILSNWKPLDSETMT 497

Query: 417 FVYNTLIKAYVKAKINDPNLLRRMILGGARPDAETYSLLK 456
           F    LIK Y  A+   P++  R+         E   LLK
Sbjct: 498 F----LIKTYAAAEKTSPDMRERLSQQQIEVSEEIQDLLK 533


>gi|357131918|ref|XP_003567580.1| PREDICTED: pentatricopeptide repeat-containing protein At4g01990,
           mitochondrial-like [Brachypodium distachyon]
          Length = 545

 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 99/422 (23%), Positives = 182/422 (43%), Gaps = 7/422 (1%)

Query: 10  VGSAFQSWMREGFPVHRGEIFHSINRLRKLQLNKRALEVMEWVIRERPYRPKELDYSYLL 69
           V      W+REG      ++   +  LRK + + +ALE+M+W++  +       +++  L
Sbjct: 95  VSRVLNKWVREGREARSVDLERYVKELRKYKRHAQALELMDWMVHTKGMNMSYTNHAIRL 154

Query: 70  EFTIKNHGISQGEKLFCCIPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSIS 129
           +   K  GI   EK F  +P   +N   Y  L+         + + +   KM  LG + S
Sbjct: 155 DLVYKVRGIEAAEKYFNGLPDPAKNHRTYGALLNCYCSSKKEEKATDLFHKMDDLGIASS 214

Query: 130 YLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYS 189
            L FN L+ L    G+ K +  +  +MKA  V P   T  +LM   A  + I+ + +V  
Sbjct: 215 TLPFNNLMSLYMKLGQHKKVAGLFEEMKAKNVKPDNLTCCVLMTSYAALNKIDAVEEVLK 274

Query: 190 DMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNW-STLDVLIILYGYL 248
           +M+         +Y  LA+ +  A L   AE+ ++ LE  +   +     D L+ LY  +
Sbjct: 275 EMEEKNAALGWSAYSTLASIYVSAGLVEKAESALKKLEGLVQPRDGRQPFDFLMSLYASV 334

Query: 249 AKGKDLERIWATVQE-LPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQY 307
               ++ R+W  V+   P V + SY   ++A  ++    R ++++ E +S  +    +  
Sbjct: 335 GNLSEVNRVWDVVKATFPKVTNTSYFSMLQALYKLNDADRIKQIFEEWESNHECYDVKLT 394

Query: 308 NSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMK 367
           N +   + KNG   +A  L ++    G   ++ T   L L  +   +  E  K+    ++
Sbjct: 395 NIMTRAHLKNGLTKEAELLWEKAKAKGADFDSKTC-ELFLDHY---MGTEDMKSALHWVE 450

Query: 368 LITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYV 427
            +T    ++     E      + F E+ DV  AE L   L+         VY +L++ Y+
Sbjct: 451 NVTKLPKKAGKLDQEKIQKFSKYFEEQKDVQGAEKLCSCLRTLGCIDGK-VYESLLRTYL 509

Query: 428 KA 429
            A
Sbjct: 510 AA 511


>gi|302782563|ref|XP_002973055.1| hypothetical protein SELMODRAFT_413483 [Selaginella moellendorffii]
 gi|300159656|gb|EFJ26276.1| hypothetical protein SELMODRAFT_413483 [Selaginella moellendorffii]
          Length = 547

 Score =  103 bits (256), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 95/464 (20%), Positives = 211/464 (45%), Gaps = 32/464 (6%)

Query: 15  QSWMREGFPVHRGEIFHSINRLRKLQLNKRALEVMEWVIRER---PYRPKE-LDYSYLLE 70
           + WM EG  + R  +    ++LR+ +    AL + +W+  ++   PY  KE L++  L  
Sbjct: 80  EEWMAEGNEITRYGLIIVRHKLRRRKRFHHALRISDWIAYKKRVIPYDHKEALNHIDL-- 137

Query: 71  FTIKNHGISQGEKLFCCIPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLG-HSIS 129
             +    +++  ++F  +P D+++   Y  L+   +   +   +      ++  G  SIS
Sbjct: 138 --VSRVSVTRAREMFDNLPADWKSREAYTVLLSMYVRHSMAADAESIYTTLKRWGLRSIS 195

Query: 130 YLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYS 189
            +  N ++ L         +  ++R  +    + ++ +F+IL+ +      +   M+   
Sbjct: 196 PI--NMMLTLYQKHQVFWKVAELIRDAEEAGQSLNMCSFNILLPMTFRAGGV-AEMESLV 252

Query: 190 DMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWS----TLDVLIILY 245
           +M  S+   +E +YC+LA+++  A +   A+  +  +E  M    ++    T +V+I++Y
Sbjct: 253 EMMESKNFLDEHTYCMLASSYGRAGMVDKAKEMLMVVEDGMETGKFNRLRRTYNVIIVIY 312

Query: 246 GYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATE 305
           G++   + ++RIW     + +  ++ Y+  I +  ++     AE  +L + + +++  T 
Sbjct: 313 GFIGDVEGVKRIWDITSRM-DPTAEDYICMIRSSAKVGLFELAESGFLALAAQRKMHIT- 370

Query: 306 QYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELG 365
             N ++ V     F+ +A  LL+++   G KP+  TY HL     K++ ++      +L 
Sbjct: 371 VCNVMLQVCQAGNFVLRAESLLRKIHQMGFKPDPATYHHLIAIHLKNDNIQRALDLFQLE 430

Query: 366 M--------------KLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKAN 411
                          K ++T+  +   PW+ T   ++   AE+G+V   E LF   +   
Sbjct: 431 RQVFRVPFELSPQERKFMSTEPRKDIKPWVGTCRMVMLALAERGEVVACETLFRNWRLEK 490

Query: 412 YTKYTFVYNTLIKAYVKAKINDPNLLRRMILGGARPDAETYSLL 455
           +     ++N L++AY  A+      + R+   G   D ET ++L
Sbjct: 491 WKTDVRLFNALLRAYEVAREPVAGFMERLEADGVEADEETIAIL 534


>gi|224114960|ref|XP_002316903.1| predicted protein [Populus trichocarpa]
 gi|222859968|gb|EEE97515.1| predicted protein [Populus trichocarpa]
          Length = 437

 Score =  103 bits (256), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 95/434 (21%), Positives = 196/434 (45%), Gaps = 17/434 (3%)

Query: 5   PRGEP---VGSAFQSWMREGFPVHRGEIFHSINRLRKLQLNKRALEVMEWVIRERPYRPK 61
           P G+P   +      W+ EG  V   E+   +  LR+ +  K+ALEV +W+   R     
Sbjct: 8   PLGDPRISLAPVLDQWVEEGKKVKDYELRTIVKGLRERKRFKQALEVSQWMSSNRLCNFS 67

Query: 62  ELDYSYLLEFTIKNHGISQGEKLFCCIPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKM 121
             D +  L+   K HG+   E  F  + +  +    Y  L+   +  G+++ SL +++KM
Sbjct: 68  PSDDAVRLDLIGKVHGLESAESYFKNLDEKDKIHKTYGALLNCYVRGGLVEKSLSHVQKM 127

Query: 122 RVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNI 181
           + LG   + L +N L+ L  + G  + +P++L  MK + ++P + ++ I +K      + 
Sbjct: 128 KELGFFSTALNYNDLMCLYVNTGLLEKVPDVLSDMKENGISPDLFSYRICLKSYGERSDF 187

Query: 182 EGLMKVYSDMK-RSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDV 240
           + + K+  +M+ +S +  +  ++  +A  +  A L   A  Y++  E+ +  N     + 
Sbjct: 188 DNVEKILREMESQSHISMDWRTFATVANIYLEAGLKEKALVYLKKCEEKVNKNALG-YNH 246

Query: 241 LIILYGYLAKGKDLERIWATVQELPNVR---SKSYVLAIEAFGRIAQVSRAEELWLEMQS 297
           LI LY  L    ++ R+W   +   N +   ++ Y+  + +  ++  +  AE+L  + +S
Sbjct: 247 LISLYASLGNKDEMMRLWELAK--ANCKKQLNRDYITILGSLVKLGHLEEAEKLLQDWES 304

Query: 298 VKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEE 357
             Q       N V+  Y + G  +KA  +L+++       N  ++  ++ G      +E+
Sbjct: 305 SCQYYDFRVPNVVLIGYSRKGLPEKAEAMLQDIIEKQKMKNPSSWSIISAGYMDKQNMEK 364

Query: 358 GFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENL--FEELKKANYTKY 415
            F+ ++  +   T      +  W      I  I    GD  +A+ +  F  L +    K 
Sbjct: 365 AFECMKEALAAET-----ENNGWRPKPAMISNILNWLGDNRDAQEVEAFVGLLETKVPKS 419

Query: 416 TFVYNTLIKAYVKA 429
             +Y+ LIK+Y++ 
Sbjct: 420 REMYHALIKSYIRC 433


>gi|242039187|ref|XP_002466988.1| hypothetical protein SORBIDRAFT_01g017960 [Sorghum bicolor]
 gi|241920842|gb|EER93986.1| hypothetical protein SORBIDRAFT_01g017960 [Sorghum bicolor]
          Length = 510

 Score =  103 bits (256), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 114/458 (24%), Positives = 197/458 (43%), Gaps = 34/458 (7%)

Query: 9   PVGSAFQSWMREGFPVHRGEIFHSINRLRKLQLNKRALEVMEWVIRERPYRPKELDYSYL 68
           P+    + W +EG  V +  I   + +L  L+    ALE+  W+   R       D +Y 
Sbjct: 58  PLSPVLKQWDQEGHTVKKFVIQAIVKKLVGLRRFAHALELSFWMTDRRHLHLTAGDVAYR 117

Query: 69  LEFTIKNHGISQGEKLFCCIPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSI 128
           L+   K HG+ +  + F  +PK  +    Y +L+   ++   +  + E+  KM+ +G   
Sbjct: 118 LDLISKVHGLEKAVEYFGMVPKRLRMPQCYGSLLKCYVEAKAVDKAEEHFAKMQEMGMKS 177

Query: 129 SYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVY 188
           SY  +  ++ L    G+ + +  + + M+   V P   +   ++       ++EG+ KV 
Sbjct: 178 SY-TYTSMMKLYLETGQLERVHAMFQDMEEKGVKPDTFSVESMLAAYIAAEDVEGVGKVL 236

Query: 189 SDMKRSEVEPNE--VSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYG 246
                 +  P+E  V +   A A   A L+  +   V A+   +      +     I Y 
Sbjct: 237 -----DKANPHEKLVKWHGQALA---ASLFMKSGMQVRAVMALLEAERRISPKSSRIAYA 288

Query: 247 YLAKG-------KDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVK 299
           +L K         ++ RIW+  +      +  Y+  I A  ++  +  AE    E ++V 
Sbjct: 289 FLLKTYTDLGMYPEVGRIWSVYKSKVPPSNTMYLSRISALLKMNDIDGAEATLKEWETVS 348

Query: 300 -QLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEG 358
            +       N ++  YC+ G ++KA  L+ +    G  P A T+  LA G FK+  V   
Sbjct: 349 LRYHDFRLINLMVDAYCREGLVEKAVALVDDAIKKGRTPYANTWYKLAGGFFKTGEVS-- 406

Query: 359 FKALELGMKLITTKKVRSST-PW---LETTLSIIEIFAEKGDVGNAENLFEELKK-ANYT 413
            KA+++     T K + S+T PW   L   L  +E F  + DV  AE +   L+K    T
Sbjct: 407 -KAVDM-----TRKALESATPPWKPDLTNVLMSLEHFMNQKDVEAAEEIASMLQKLGPLT 460

Query: 414 KYTFVYNTLIKAYVKAKINDPNLLRRMILGGARPDAET 451
           K   VY+ L+K YV+A     +LL RM   G   D ET
Sbjct: 461 KE--VYHCLLKTYVRAGKPVSDLLERMKKDGLEADEET 496


>gi|224063635|ref|XP_002301239.1| predicted protein [Populus trichocarpa]
 gi|222842965|gb|EEE80512.1| predicted protein [Populus trichocarpa]
          Length = 497

 Score =  102 bits (255), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 85/407 (20%), Positives = 178/407 (43%), Gaps = 6/407 (1%)

Query: 11  GSAFQSWMREGFPVHRGEIFHSINRLRKLQLNKRALEVMEWVI-RERPYRPKELDYSYLL 69
           GS    W  +G  + + E+   +  LRK +  ++ALEV +W+  R+  +     D +  L
Sbjct: 86  GSVLNQWENDGKRLTKWELCRVVKELRKYKRYQQALEVYDWMNNRQERFGLSPSDAAIQL 145

Query: 70  EFTIKNHGISQGEKLFCCIPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSIS 129
           +   K  G+S  E  F  +P  +++  +Y  L+ A +   + + +   + +MR   +   
Sbjct: 146 DLIAKVRGVSSAEDFFLRLPNTFKDRRIYGALLNAYVRNRMREKAESLIDEMRGKDYVTH 205

Query: 130 YLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYS 189
            L +N ++ L  +      +  I+ +M    +   + +++I +       + + + +V+ 
Sbjct: 206 ALPYNVMMTLYMNINEYDKVDLIISEMNEKNIKLDIYSYNIWLSSCGLQGSADKMEQVFE 265

Query: 190 DMKRS-EVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYL 248
            MK    + PN  ++  +AT +     +  AE  +  +E  +TG +      L+ LYG +
Sbjct: 266 QMKSDGSINPNWTTFSTMATMYIKMGKFEKAEDCLRRVESRITGRDRIPYHYLLSLYGNV 325

Query: 249 AKGKDLERIWATVQEL-PNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQY 307
              +++ R+W   + + P++ +  Y   I +  R+  +  AE+++ E  S+K        
Sbjct: 326 GNKEEVYRVWNIYKSIFPSIPNLGYHAMISSLVRMDDIEGAEKIYEEWLSIKTSYDPRIA 385

Query: 308 NSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMK 367
           N  ++ +   G +DKA      M   G KPN+ ++  LA G        E    L+   +
Sbjct: 386 NLFMAAFVYQGNLDKAESFFDHMLEEGGKPNSHSWEILAQGHISERRTSEALSCLK---E 442

Query: 368 LITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTK 414
              T   +S  P      S  ++  E+ D+ + E L   L+++ + K
Sbjct: 443 AFATPGSKSWKPNPANVSSFFKLCEEEVDMASKEALASFLRQSGHLK 489


>gi|302798915|ref|XP_002981217.1| hypothetical protein SELMODRAFT_420704 [Selaginella moellendorffii]
 gi|300151271|gb|EFJ17918.1| hypothetical protein SELMODRAFT_420704 [Selaginella moellendorffii]
          Length = 541

 Score =  102 bits (255), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 104/466 (22%), Positives = 201/466 (43%), Gaps = 64/466 (13%)

Query: 10  VGSAFQSWMREGFPVHRGEIFHSINRLRKLQLNKRALEVMEWVIRERPYRPKELDYSYLL 69
           + +A + W  EG  V R  I+  I RL       + +++M WVI E+P++  + D+   +
Sbjct: 125 IVAALKDWQSEGNLVTRDVIYKLIIRLHARMFYFQGMKLMNWVIVEKPFQLTDFDHLVRM 184

Query: 70  EFTIKNHGISQGEKLFCCIPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSIS 129
           +F  +   + +                     V+ C ++   K    Y+  ++       
Sbjct: 185 DFHTRELKVDK---------------------VLTCFNRIQDKTETCYVLLLQAF----- 218

Query: 130 YLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYS 189
                      ++  R++   ++L+QMK   +  +  ++++++ +      I+   ++++
Sbjct: 219 -----------ATAHRKERALDVLKQMKELVLITNSYSYNLVIAMYLRMGLIDEAKEMFA 267

Query: 190 DMK-RSEVEPNEVSYCIL---ATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILY 245
           ++K +S V P+  +Y  L     A  +  L    E +   ++K  TG  W  L   I LY
Sbjct: 268 ELKDKSNVAPDAFTYLNLLKSRDALGMDDLEDTIEEFFLDVDKIPTGFEWRNL---IRLY 324

Query: 246 GYLAKGKDLERIWATVQELPNVRSKSYVLA-IEAFGRIAQVSRAEELWLEMQSVKQLKAT 304
           G + K KD+ER+W   + +     +SY LA IE+FG   ++ + EE+  ++++  Q  + 
Sbjct: 325 GAMGKKKDVERLWREQKRVAEYMPESYFLAAIESFGMNGEMKQFEEICKQLEAQNQKLSE 384

Query: 305 EQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSN--------LVE 356
            Q  +++ VYC NG ++ A    K+M     K     Y +L  G    +          E
Sbjct: 385 RQCFTMLKVYCMNGLMNDAERTAKKMEELRYKLGFKGYHYLVSGYVNRHQFVKATEKFSE 444

Query: 357 EGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYT 416
              K L  G K           P   T L+++E +A K ++  AE + E++ K  +  Y 
Sbjct: 445 AEEKGLAKGFK----------NPLFVTVLTLLEAYAGKKELEKAEEMVEKVLKTKHYPYD 494

Query: 417 F-VYNTLIKAYVKAKINDPNLLRRMILGGARPDAETYSLLKLAEQF 461
             ++N L+K Y + +     +  R+      P+  T+ LLK  E F
Sbjct: 495 IRLFNALLKVYRRCQKPAWGIENRIKEAKLEPNETTHKLLKKLEVF 540


>gi|302805546|ref|XP_002984524.1| hypothetical protein SELMODRAFT_423640 [Selaginella moellendorffii]
 gi|300147912|gb|EFJ14574.1| hypothetical protein SELMODRAFT_423640 [Selaginella moellendorffii]
          Length = 547

 Score =  102 bits (255), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 95/464 (20%), Positives = 211/464 (45%), Gaps = 32/464 (6%)

Query: 15  QSWMREGFPVHRGEIFHSINRLRKLQLNKRALEVMEWVIRER---PYRPKE-LDYSYLLE 70
           + WM EG  + R  +    ++LR+ +    AL + +W+  ++   PY  KE L++  L  
Sbjct: 80  EEWMAEGNEITRYGLIIVRHKLRRRKRFHHALRISDWIAYKKRVIPYDHKEALNHIDL-- 137

Query: 71  FTIKNHGISQGEKLFCCIPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLG-HSIS 129
             +    +++  ++F  +P D+++   Y  L+   +   +   +      ++  G  SIS
Sbjct: 138 --VSRVSVTRAREMFDNLPADWKSREGYTVLLSMYVRHSMAADAESIYTTLKRWGLRSIS 195

Query: 130 YLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYS 189
            +  N ++ L         +  ++R  +    + ++ +F+IL+ +      +   M+   
Sbjct: 196 PI--NMMLTLYQKHQVFWKVAELIRDAEEAGQSLNMCSFNILLPMTFRAGGV-AEMESLV 252

Query: 190 DMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWS----TLDVLIILY 245
           +M  S+   +E +YC+LA+++  A +   A+  +  +E  M    ++    T +V+I++Y
Sbjct: 253 EMMESKNFLDEHTYCMLASSYGRAGMVDKAKEMLMVVEDGMETGKFNRLRRTYNVIIVIY 312

Query: 246 GYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATE 305
           G++   + ++RIW     + +  ++ Y+  I +  ++    +AE  +L + + +++  T 
Sbjct: 313 GFIGDVEGVKRIWDITSRM-DPTAEDYICMIRSSAKVGLFEQAESGFLALAAQRKMHIT- 370

Query: 306 QYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELG 365
             N ++ V     F+ +A  LL+++   G KP+  TY HL     K++ ++      +L 
Sbjct: 371 VCNVMLQVCQAGNFVLRAESLLRKIHQMGFKPDPATYHHLIAIHLKNDNIQRALDLFQLE 430

Query: 366 M--------------KLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKAN 411
                          K ++T+  +   PW+ T   ++   AE+G+V   E LF   +   
Sbjct: 431 RQVFRVPFELSPQERKFMSTEPRKDIKPWVGTCRMMMLALAERGEVVACETLFRNWRLEK 490

Query: 412 YTKYTFVYNTLIKAYVKAKINDPNLLRRMILGGARPDAETYSLL 455
           +     ++N L++AY  A+      + R+   G   D ET  +L
Sbjct: 491 WKTDVRLFNALLRAYEVAREPVAGFMERLEADGVEADEETIGIL 534


>gi|302801862|ref|XP_002982687.1| hypothetical protein SELMODRAFT_422000 [Selaginella moellendorffii]
 gi|300149786|gb|EFJ16440.1| hypothetical protein SELMODRAFT_422000 [Selaginella moellendorffii]
          Length = 541

 Score =  102 bits (254), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 104/466 (22%), Positives = 201/466 (43%), Gaps = 64/466 (13%)

Query: 10  VGSAFQSWMREGFPVHRGEIFHSINRLRKLQLNKRALEVMEWVIRERPYRPKELDYSYLL 69
           + +A + W  EG  V R  I+  I RL       + +++M WVI E+P++  + D+   +
Sbjct: 125 IVAALKDWQSEGNLVTRDVIYKLIIRLHARMFYFQGMKLMNWVIVEKPFQLTDFDHLVRM 184

Query: 70  EFTIKNHGISQGEKLFCCIPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSIS 129
           +F  +   + +                     V+ C ++   K    Y+  ++       
Sbjct: 185 DFHTRELKVDK---------------------VLTCFNRIQDKTETCYVLLLQAF----- 218

Query: 130 YLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYS 189
                      ++  R++   ++L+QMK   +  +  ++++++ +      I+   ++++
Sbjct: 219 -----------ATAHRKERALDVLKQMKELVLITNPYSYNLVIAMYLRMGLIDEAKEMFA 267

Query: 190 DMK-RSEVEPNEVSYCIL---ATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILY 245
           ++K +S V P+  +Y  L     A  +  L    E +   ++K  TG  W  L   I LY
Sbjct: 268 ELKDKSNVAPDAFTYLNLLKSRDALGMDDLEDTIEEFFLDVDKIPTGFEWRNL---IRLY 324

Query: 246 GYLAKGKDLERIWATVQELPNVRSKSYVLA-IEAFGRIAQVSRAEELWLEMQSVKQLKAT 304
           G + K KD+ER+W   + +     +SY LA IE+FG   ++ + EE+  ++++  Q  + 
Sbjct: 325 GAMGKKKDVERLWREQKRVAEYMPESYFLAAIESFGMNGEMKQFEEICKQLEAQNQKLSE 384

Query: 305 EQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSN--------LVE 356
            Q  +++ VYC NG ++ A    K+M     K     Y +L  G    +          E
Sbjct: 385 RQCFTMLKVYCMNGLMNDAERTAKKMEELRYKLGFKGYHYLVSGYVNRHQFVKATEKFSE 444

Query: 357 EGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYT 416
              K L  G K           P   T L+++E +A K ++  AE + E++ K  +  Y 
Sbjct: 445 AEEKGLAKGFK----------NPLFVTVLTLLEAYAGKKELEKAEEMVEKVLKTKHYPYD 494

Query: 417 F-VYNTLIKAYVKAKINDPNLLRRMILGGARPDAETYSLLKLAEQF 461
             ++N L+K Y + +     +  R+      P+  T+ LLK  E F
Sbjct: 495 IRLFNALLKVYRRCQKPAWGIENRIKEAKLEPNETTHKLLKKLEVF 540


>gi|297799892|ref|XP_002867830.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297313666|gb|EFH44089.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 492

 Score =  102 bits (253), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 99/458 (21%), Positives = 204/458 (44%), Gaps = 11/458 (2%)

Query: 5   PRGEPVGSAF---QSWMREGFPVHRGEIFHSINRLRKLQLNKRALEVMEWVIRERPYRPK 61
           P G+P  S +   Q+W++ G  V   E+   ++ LR+ +    ALEV +W+         
Sbjct: 33  PLGDPKSSVYPELQNWVQCGKKVSVAELIRIVHDLRRRKRFLHALEVSKWMNETGVCVFS 92

Query: 62  ELDYSYLLEFTIKNHGISQGEKLFCCIPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKM 121
             +++  L+   + +G    E+ F  + + Y+NE  Y  L+   + +  ++ SL + +KM
Sbjct: 93  PTEHAVHLDLIGRVYGFVTAEEYFENLKEQYKNEKTYGALLNCYVRQQNVEKSLLHFQKM 152

Query: 122 RVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNI 181
           + +G   S L +N ++ L ++ G+ + +P +L +MK + VAP   +F I +       ++
Sbjct: 153 KEMGFVSSSLTYNNIMCLYTNIGQHEKVPGVLDEMKEENVAPDNYSFRICINAFGAMSDL 212

Query: 182 EGLMKVYSDM-KRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDV 240
           E +  +  DM +R +   +  +Y + A  +        A   ++  E  +   +    + 
Sbjct: 213 ERIGGILRDMERRPDFTMDWNTYAVAAKFYIDGGDCDRAVELLKMSEYRLEKKDGEGYNH 272

Query: 241 LIILYGYLAKGKDLERIWATVQELPNVR-SKSYVLAIEAFGRIAQVSRAEELWLEMQSVK 299
           LI LY  L    ++ R+W   +E    R ++ Y+  +++  +I  +  AE +  E +S  
Sbjct: 273 LITLYARLGNKIEVLRLWELEKEACKRRINQDYLTVLQSLMKIDGLKEAEVVLTEWESSG 332

Query: 300 QLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGF 359
                   N+VI  Y      +KA  +L++++  G      ++  +A    +   +   F
Sbjct: 333 NCYDFRVPNTVIRGYTGKSMEEKAEAMLEDLARRGKTTTPESWGLVATAYAEKGALGNAF 392

Query: 360 KALELGMKL-ITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFV 418
           K ++  + + +  +K R   P L+   S++     +G +   E+    L+         +
Sbjct: 393 KCMKTALGIEVENRKWR---PGLKLVTSVLSWLGGEGSLKEVESFVASLRNCIGVNKQ-M 448

Query: 419 YNTLIKAYVK-AKINDPNLLRRMILGGARPDAETYSLL 455
           Y+ L+KA ++    N   LL+RM       D ET  +L
Sbjct: 449 YHALVKADIREGGSNIDTLLKRMKDDQIETDEETTVIL 486


>gi|125541465|gb|EAY87860.1| hypothetical protein OsI_09282 [Oryza sativa Indica Group]
          Length = 517

 Score =  102 bits (253), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 97/431 (22%), Positives = 194/431 (45%), Gaps = 7/431 (1%)

Query: 15  QSWMREGFPVHRGEIFHSINRLRKLQLNKRALEVMEWVIRERPYRPKELDYSYLLEFTIK 74
           + W RE   V   E+   + RLR+ +  ++ALE++ W+     +R    D+   LE   K
Sbjct: 70  ERWARERGRVSPPELRRDVVRLRRARRYEQALEILSWMDSHNDFRLSPSDHMVRLELIAK 129

Query: 75  NHGISQGEKLFCCIPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFN 134
            HG SQ E+ +  +      +     L+   + +  ++ +  +M +++  G  +    FN
Sbjct: 130 VHGTSQAEEYYRKLSTAASKKAASFPLLHCYVTERNVQKAETFMAELQRYGLPVDPHSFN 189

Query: 135 RLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRS 194
            ++ L  +  + + + +++  MK + +  +V +++I M   A    +  +   + +M   
Sbjct: 190 EIMKLYVATCQYEKVLSVIYLMKRNNIPRNVLSYNIWMNACAEVSGLASVQSAFKEMLND 249

Query: 195 E-VEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKD 253
           + VE    +YC LA         + A   +   E  ++         ++  Y  L     
Sbjct: 250 DMVEVGWSTYCTLANIFKKYGQSSKALACLRTAETKLSSTGRLGYSFIMTCYAALNDRDG 309

Query: 254 LERIWATVQELPN-VRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVIS 312
           + R+W   + +P  + + +Y+ A+    ++  + RAE  +   ++  +       N ++ 
Sbjct: 310 VIRLWEASKIVPGRIPAANYMSAMVCLIKVGDIGRAEWTFGSWEAESKKHDVRVSNVLLG 369

Query: 313 VYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTK 372
            Y +NG+I+KA  L   M   G  PN  T+  L  G  +S  +++   A++ G+ L+ T 
Sbjct: 370 AYVRNGWIEKAERLHLHMLEKGAHPNYKTWEILMEGFVQSKQMDKAVNAMKKGLSLLKTC 429

Query: 373 KVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKIN 432
             R   P LE   +I + F E+G V +A+   + L+K N T    +Y +L+ AY+ A I 
Sbjct: 430 HWR---PPLELLEAIAKYFEEQGSVEDADRFIKVLQKFNLTSLP-LYKSLLGAYINADIV 485

Query: 433 DPNLLRRMILG 443
            P  + +MI G
Sbjct: 486 -PQNIPQMIAG 495


>gi|343172214|gb|AEL98811.1| pentatricopeptide repeat-containing protein, partial [Silene
           latifolia]
          Length = 359

 Score =  101 bits (252), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 76/283 (26%), Positives = 140/283 (49%), Gaps = 6/283 (2%)

Query: 64  DYSYLLEFTIKNHGISQGEKLFCCIPKDYQNELLYNNLV-IACLDKGVIKLSLE-YMKKM 121
           D +  L+   K HG++  E  F  +P+  +N   Y  L+ I C  K +I    E  M+KM
Sbjct: 22  DQAIHLDLIGKTHGVAAAENYFIDLPESSKNIECYGALLNIYC--KELIPDKAEALMEKM 79

Query: 122 RVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNI 181
           + LG  I+ + +N L+ L S  G  + +P ++++MKA  +     T+++ M+  A   +I
Sbjct: 80  KELGLPITAMSYNSLMTLYSKTGLPEKVPALVQEMKASDIMLQTYTYNVWMRALAAVKDI 139

Query: 182 EGLMKVYSDMKRS-EVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDV 240
            G+ +V  +MKR   V  +  +Y  LA+ +  ++++  AE  ++ LEK  T  + S    
Sbjct: 140 YGVERVLDEMKRDGRVAEDWTTYSNLASIYVESKMFEKAENALKELEKRNTSQDLSPYQF 199

Query: 241 LIILYGYLAKGKDLERIWATVQ-ELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVK 299
           L+ LYG      ++ R+W +++   P   + +Y+  I+    +  +  AE+ + + +S  
Sbjct: 200 LLTLYGKTGNLIEVYRVWRSLRLAFPKTPNVAYLNMIQRLVTLKDLKGAEKCFADWESSC 259

Query: 300 QLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITY 342
                   N ++  Y K+G + +A  L K     G KPNA T+
Sbjct: 260 TNYDIRIANVLMGAYIKDGLLQQAKELKKRACKRGAKPNAKTW 302


>gi|297832672|ref|XP_002884218.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297330058|gb|EFH60477.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 491

 Score =  101 bits (252), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 86/353 (24%), Positives = 156/353 (44%), Gaps = 17/353 (4%)

Query: 7   GEPVGS---AFQSWMREGFPVHRGEIFHSINRLRKLQLNKRALEVMEWVIRERPYRPKEL 63
           G+P  S       W+ +G  V   E+   I  LRK      AL++ +W+   R +   E 
Sbjct: 49  GDPSASIIRVLDGWLDQGHLVKTSELHGIIKMLRKFSRFSHALQISDWMSEHRVHEITEG 108

Query: 64  DYSYLLEFTIKNHGISQGEKLFCCIPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMRV 123
           D +  L+   K  G+ + EK F  IP + +N  LY  L+     K V+  + +  ++M+ 
Sbjct: 109 DVAIRLDLIAKVGGLGEAEKFFETIPMERRNYHLYGALLNCYASKKVLHKAEQVFQEMKE 168

Query: 124 LGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEG 183
           LG     L +N ++ L    G+   +  +LR+M+   V P + T +  +   +   ++EG
Sbjct: 169 LGFLKGCLPYNVMLNLYVRTGKYTMVEKLLREMEDGTVKPDIFTVNTRLHAYSAVSDVEG 228

Query: 184 LMKVYSDMKRSEVEP----NEVSYCILATAHAVARLYTVAETYVEALEKSMTGNN----W 235
           + K    + R E +     +  +Y   A  +  A L    E  +E L KS    N     
Sbjct: 229 MEKF---LMRCEADTGLHLDWRTYADTANGYIKAGL---TEKAIEMLRKSEQMVNPRKRK 282

Query: 236 STLDVLIILYGYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEM 295
              +VL+  YG   K +++ R+W+  +EL    +  Y+  I A  ++  +   E++  E 
Sbjct: 283 HAYEVLMSFYGAAGKKEEVYRLWSLYKELDGFYNTGYISVISALLKMDDIEEVEKIMEEW 342

Query: 296 QSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALG 348
           ++   L      + +I+ YCK G ++KA  ++  +       +  T+  LALG
Sbjct: 343 EAGHSLFDIRIPHLLITGYCKKGMMEKAEEVVNMLVQKWRVEDTSTWERLALG 395


>gi|255563224|ref|XP_002522615.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223538091|gb|EEF39702.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 426

 Score =  101 bits (251), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 78/297 (26%), Positives = 144/297 (48%), Gaps = 14/297 (4%)

Query: 3   RLPRGEPVGSAFQSWMREGFPVHRGEIFHSINRLRKLQLNKRALEVMEWVIRERPYRPKE 62
           RLP+     +   +W+ EG  V   E+ +  N LRKLQ  K ALE+ EW++  + +   +
Sbjct: 84  RLPK-RSATNIIHNWVSEGNTVTASELRNISNELRKLQRYKHALEISEWMVTNKEFELMD 142

Query: 63  LDYSYLLEFTIKNHGISQGEKLFCCIPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMR 122
            DY+  ++   K  GI   E+ F  +P   +    Y  L+ +    GV +L        R
Sbjct: 143 FDYATRIDLMTKVFGIDAAERYFEGLPITVKTSETYTALLHSY--AGVKQLGKAEELYER 200

Query: 123 VLGHSISY--LVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHN 180
           + G ++S+  L +N ++ L  S G+ + +  ++ ++K  K+AP + T+++ +   A   N
Sbjct: 201 IKGSNLSFTALTYNEMMTLYMSVGQVEKVSLVVEELKRQKIAPDIFTYNLWISSCAAILN 260

Query: 181 IEGLMKVYSDMKR-SEVEPNEVSYCILATAHAVA-RLYTVAETYVEALEKSMTGNNWSTL 238
           I+ + ++  +MK  S    + + Y  +A  +  A  L     + V   EKS+T   W T 
Sbjct: 261 IDQVTRILDEMKHDSGCNDDWLRYIDIANIYVKAGHLVNTESSAVVEAEKSITQREWITY 320

Query: 239 DVLIILYGYLAKGKDLERIW----ATVQELPNVRSKSYVLAIEAFGRIAQVSRAEEL 291
           D LIILY  L     +++IW     T Q++ N   +++V  + ++  +  +  A E+
Sbjct: 321 DFLIILYAGLRDKDKVDQIWKSLRMTKQKMTN---RNFVCILSSYMMLGHLKEAGEV 374


>gi|255556039|ref|XP_002519054.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223541717|gb|EEF43265.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 485

 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 106/466 (22%), Positives = 209/466 (44%), Gaps = 18/466 (3%)

Query: 5   PRGEPVGS---AFQSWMREGFPVHRGEIFHSINRLRKLQLNKRALEVMEWVIRERPYRPK 61
           P G+P  S      +W+++G  V  GE+   I  LRK     +ALEV EW+ ++      
Sbjct: 22  PLGDPNTSLVPELDNWVQDGNKVRVGELQRIIRDLRKRNRFTQALEVSEWMNKKGICIFS 81

Query: 62  ELDYSYLLEFTIKNHGISQGEKLFCCIPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKM 121
             +++  L+   K  G    E  F  +    + +  Y  L+   + +     S+ + +KM
Sbjct: 82  STEHAVQLDLIGKVRGFLSAENYFNNLMDHDKTDKTYGALLNCYVRQRQTDRSISHWQKM 141

Query: 122 RVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNI 181
           + +G + S L +N ++ L  + G  + + ++L +MK +K++P   ++ I +       +I
Sbjct: 142 KEMGLASSPLAYNDIMCLYINLGLYEKVLHVLTEMKENKISPDNFSYRICINSYGARSDI 201

Query: 182 EGLMKVYSDMK-RSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKS---MTGNNWST 237
           +G+ KV ++M+ R     +  +Y ++A  +  A L   A+  V+AL KS   +   +   
Sbjct: 202 QGMEKVLNEMECRLGNAMDWNTYAVVANFYIKAGL---ADKAVDALRKSEEKLDKKDGIG 258

Query: 238 LDVLIILYGYLAKGKDLERIWATVQELPNVR-SKSYVLAIEAFGRIAQVSRAEELWLEMQ 296
            + LI LY  L    ++ RIW   + +   R ++ +V  +E+  ++  +  AE++  E +
Sbjct: 259 YNHLISLYATLGIKSEVLRIWDLQKSVCKRRINRDFVTMLESLVKLGDLEEAEKVLKEWE 318

Query: 297 SVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVE 356
           S          N V+  Y KNG  +KA   L+ +   G      ++  +A G  +     
Sbjct: 319 SSGNFYDVRIPNIVVVGYSKNGLHEKAEASLEALMEKGRATTPNSWAMIASGYLEKGEKA 378

Query: 357 EGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENL--FEELKKANYTK 414
           + F+ ++    L   KK      W      +++I    GD G+ E++  F          
Sbjct: 379 KAFECMKAAFSLNVEKK-----GWKPNPRVVMDILIWLGDEGSPEDVEAFVASLSVAIPL 433

Query: 415 YTFVYNTLIKAYVKAKINDPNLLRRMILGGARPDAETYSLLKLAEQ 460
              +Y+ L+KA +++  +   +L RM       D ET  +L ++++
Sbjct: 434 NRQIYHALLKAKIRSGRDAHEILDRMKTDKIDEDEETKEILGISKK 479


>gi|168019209|ref|XP_001762137.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162686541|gb|EDQ72929.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 513

 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 93/439 (21%), Positives = 200/439 (45%), Gaps = 24/439 (5%)

Query: 28  EIFHSINRLRKLQLNKRALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQGE----- 82
           ++  ++   R+ +  + A+ + EW+++   ++P    ++ L++   +    ++ E     
Sbjct: 67  DLMETVAEFRRQRKWRSAIVIYEWILQGSMFKPDVGCFNMLMDAYGRTKQWTEAENTFHL 126

Query: 83  -KLFCCIPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNR-LIILN 140
            K F C+P     E  +N L+ A    G ++ +   + +M+    S   + +N  L +LN
Sbjct: 127 MKKFQCLP----TETSFNVLMAAYSRGGQLERAERVLHEMKESNCSPGLVTYNTYLEVLN 182

Query: 141 SSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNE 200
            S G  +   ++ R+M+   V P V+TF +++ I    H+      ++  M+++   P+ 
Sbjct: 183 KS-GSWQLAEDVFREMQNRGVPPAVNTFTLMINIYGKAHHSAKAEHLFQSMRKALCPPSL 241

Query: 201 VSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWAT 260
            +Y  L  AHA       AE     L+      +  T + L+  Y         + ++ T
Sbjct: 242 FTYTALINAHAREGNCVRAEEIFAELQSVGFVPDIYTYNALLEAYSRGGHPAGAKEVFET 301

Query: 261 VQELPNVRSK--SYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNG 318
           + E   V++   SY + I+AFGR   +S A+ ++  M+ V      + +  ++S + K G
Sbjct: 302 MLE-AGVKADHVSYNILIDAFGRAGLISDAQAIYDSMKKVGFKPTMKSHILLLSAFVKAG 360

Query: 319 FIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSST 378
            +  A   ++ +   G +P+   +  L LG + ++   +  ++L   M+    K      
Sbjct: 361 RVTDAENFVRRLESMGVEPDTFMFNSL-LGAYGNSGRMDKMESLYESMQGSVCK------ 413

Query: 379 PWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKINDP--NL 436
           P + T  ++I ++A+ G +  AE +F  L+   +T     + +L+ AY K K+     ++
Sbjct: 414 PDIITLNTLINVYAQGGYIERAEEIFNSLESKGFTPDVMSWTSLMGAYSKRKLYRKCVSV 473

Query: 437 LRRMILGGARPDAETYSLL 455
            ++M++ G  PD  T  +L
Sbjct: 474 YQKMLIAGCIPDRATAKVL 492



 Score = 60.1 bits (144), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 75/331 (22%), Positives = 137/331 (41%), Gaps = 21/331 (6%)

Query: 41  LNKR-ALEVMEWVIRE---RPYRPKELDYSYLLEFTIKNHGISQGEKLF------CCIPK 90
           LNK  + ++ E V RE   R   P    ++ ++    K H  ++ E LF       C P 
Sbjct: 181 LNKSGSWQLAEDVFREMQNRGVPPAVNTFTLMINIYGKAHHSAKAEHLFQSMRKALCPPS 240

Query: 91  DYQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIP 150
            +     Y  L+ A   +G    + E   +++ +G       +N L+   S  G      
Sbjct: 241 LFT----YTALINAHAREGNCVRAEEIFAELQSVGFVPDIYTYNALLEAYSRGGHPAGAK 296

Query: 151 NILRQM-KADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATA 209
            +   M +A   A HVS ++IL+        I     +Y  MK+   +P   S+ +L +A
Sbjct: 297 EVFETMLEAGVKADHVS-YNILIDAFGRAGLISDAQAIYDSMKKVGFKPTMKSHILLLSA 355

Query: 210 HAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQEL---PN 266
              A   T AE +V  LE      +    + L+  YG   +   +E ++ ++Q     P+
Sbjct: 356 FVKAGRVTDAENFVRRLESMGVEPDTFMFNSLLGAYGNSGRMDKMESLYESMQGSVCKPD 415

Query: 267 VRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGL 326
           + + + ++ + A G    + RAEE++  ++S         + S++  Y K     K   +
Sbjct: 416 IITLNTLINVYAQG--GYIERAEEIFNSLESKGFTPDVMSWTSLMGAYSKRKLYRKCVSV 473

Query: 327 LKEMSMNGCKPNAITYRHLALGCFKSNLVEE 357
            ++M + GC P+  T + L   C     V+E
Sbjct: 474 YQKMLIAGCIPDRATAKVLLSSCRGPEQVKE 504


>gi|115449217|ref|NP_001048388.1| Os02g0796400 [Oryza sativa Japonica Group]
 gi|47497029|dbj|BAD19082.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|47497238|dbj|BAD19283.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|113537919|dbj|BAF10302.1| Os02g0796400 [Oryza sativa Japonica Group]
 gi|125584008|gb|EAZ24939.1| hypothetical protein OsJ_08720 [Oryza sativa Japonica Group]
          Length = 517

 Score =  100 bits (250), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 96/431 (22%), Positives = 194/431 (45%), Gaps = 7/431 (1%)

Query: 15  QSWMREGFPVHRGEIFHSINRLRKLQLNKRALEVMEWVIRERPYRPKELDYSYLLEFTIK 74
           + W RE   V   E+   + RLR+ +  ++ALE++ W+     +R    D+   L+   K
Sbjct: 70  ERWARERGRVSPPELRRDVVRLRRARRYEQALEILSWMDSHNDFRLSPSDHMVRLDLIAK 129

Query: 75  NHGISQGEKLFCCIPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFN 134
            HG SQ E+ +  +      +     L+   + +  ++ +  +M +++  G  +    FN
Sbjct: 130 VHGTSQAEEYYRKLSTAASKKAASFPLLHCYVTERNVQKAETFMAELQRYGLPVDPHSFN 189

Query: 135 RLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRS 194
            ++ L  +  + + + +++  MK + +  +V +++I M   A    +  +   + +M   
Sbjct: 190 EIMKLYVATCQYEKVLSVIYLMKRNNIPRNVLSYNIWMNACAEVSGLASVQSAFKEMLND 249

Query: 195 E-VEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKD 253
           + VE    +YC LA         + A   +   E  ++         ++  Y  L     
Sbjct: 250 DMVEVGWSTYCTLANIFKKYGQSSKALACLRTAETKLSSTGRLGYSFIMTCYAALNDRDG 309

Query: 254 LERIWATVQELPN-VRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVIS 312
           + R+W   + +P  + + +Y+ A+    ++  + RAE  +   ++  +       N ++ 
Sbjct: 310 VIRLWEASKIVPGRIPAANYMSAMVCLIKVGDIGRAEWTFGSWEAESKKHDVRVSNVLLG 369

Query: 313 VYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTK 372
            Y +NG+I+KA  L   M   G  PN  T+  L  G  +S  +++   A++ G+ L+ T 
Sbjct: 370 AYVRNGWIEKAERLHLHMLEKGAHPNYKTWEILMEGFVQSKQMDKAVNAMKKGLSLLKTC 429

Query: 373 KVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKIN 432
             R   P LE   +I + F E+G V +A+   + L+K N T    +Y +L+ AY+ A I 
Sbjct: 430 HWR---PPLELLEAIAKYFEEQGSVEDADRFIKVLQKFNLTSLP-LYKSLLGAYINADIV 485

Query: 433 DPNLLRRMILG 443
            P  + +MI G
Sbjct: 486 -PQNIPQMIAG 495


>gi|357466003|ref|XP_003603286.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355492334|gb|AES73537.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1246

 Score =  100 bits (250), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 98/390 (25%), Positives = 158/390 (40%), Gaps = 36/390 (9%)

Query: 92  YQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPN 151
           Y+N   Y  +  A   KG I  +   ++KM  +G  ++   +N LI L   PG       
Sbjct: 163 YRNLTTYMTIFKALSIKGGIGRAPFALRKMTEVGFILNAYSYNGLIHL-LLPGFCNEALK 221

Query: 152 ILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHA 211
           + ++M ++ + P + T+  LM       +   +M +  +MK   + PN  +Y I   A  
Sbjct: 222 VYKRMISEGMKPSMKTYSALMVALGRRGDTRKIMNLLEEMKSIGLRPNIYTYTICIRALG 281

Query: 212 VARLYTVAETYVEALEKSMTGNNWSTLDVLI---ILYGYLAKGKDLERIWATVQELPNVR 268
            AR    A    + ++    G +  T  VLI      G L K K+L          P+  
Sbjct: 282 RARRIDDAWGIFKEMDDEGCGPDVITYTVLIDALCAAGKLDKAKELYVKMRASSHSPD-- 339

Query: 269 SKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLK 328
             +Y+  ++ FG++  +   +  W EM+          Y  +I   CK+G +D+A  +L 
Sbjct: 340 RVTYITLMDKFGKVGDLETVKRFWNEMEVDGYAPDVVTYTILIEALCKSGDVDRAFDMLD 399

Query: 329 EMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALE----LGMK----------------- 367
            M+  G  PN  TY  +  G  K+  ++E  + LE    LG+K                 
Sbjct: 400 VMTTKGIFPNLHTYNTMICGLLKARRLDEALELLENMESLGVKPTAFSYVLFIDYYGKSG 459

Query: 368 -------LITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYN 420
                     T K R   P +    + +   AE G +  AE++F +L K   +  +  YN
Sbjct: 460 DPAKAIDTFETMKKRGIMPSIAACNASLYTLAETGRISEAEDIFNDLHKCGLSPDSVTYN 519

Query: 421 TLIKAYVKAKIND--PNLLRRMILGGARPD 448
            L+K Y KA   D    LL  MI  G  PD
Sbjct: 520 MLMKCYSKAGQIDKATQLLSEMISKGCEPD 549



 Score = 85.1 bits (209), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 76/313 (24%), Positives = 137/313 (43%), Gaps = 22/313 (7%)

Query: 152  ILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHA 211
            +   MK+    P+  T+++L+        I  L  +YS+M+    EPN +++ I+ +A  
Sbjct: 818  LFEDMKSAGTHPNNFTYNLLLDAHGKSKRINKLYDLYSEMRSRGCEPNAITHNIIISALV 877

Query: 212  VAR-LYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQEL------ 264
             +  L    + Y E     M+G+   T      L   L K    E+     +E+      
Sbjct: 878  KSNNLNKALDLYYEL----MSGDFSPTPCTYGPLIDGLLKAGRSEQAMKIFEEMLDYGCG 933

Query: 265  PNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKAS 324
            PN  S  Y + I  FG+  ++  A EL+ +M         + Y  ++   C  G ID+A 
Sbjct: 934  PN--SVIYNILINGFGKSGEIDFACELFKKMVKEGIRPDLKSYTILVECLCITGRIDEAV 991

Query: 325  GLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETT 384
               +E+ + G  P+ ++Y  +  G  KS  ++E        + L +  K R  +P L T 
Sbjct: 992  QYFEELKLTGLDPDTVSYNFIINGLGKSRRLDEA-------LSLFSEMKNRGISPDLYTY 1044

Query: 385  LSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKINDP--NLLRRMIL 442
             ++I      G V  A  ++EEL+        F YN LI+ +  +   D   ++ ++M++
Sbjct: 1045 NALILHLGIAGKVDVAVKMYEELQLVGLEPSVFTYNALIRGHSLSGNKDQAFSVFKKMMV 1104

Query: 443  GGARPDAETYSLL 455
             G  P+ ET++ L
Sbjct: 1105 VGCSPNTETFAQL 1117



 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 80/366 (21%), Positives = 143/366 (39%), Gaps = 16/366 (4%)

Query: 96  LLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQ 155
           + Y  L+ A    G +  + E   KMR   HS   + +  L+      G  +T+     +
Sbjct: 306 ITYTVLIDALCAAGKLDKAKELYVKMRASSHSPDRVTYITLMDKFGKVGDLETVKRFWNE 365

Query: 156 MKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARL 215
           M+ D  AP V T+ IL++      +++    +   M    + PN  +Y  +      AR 
Sbjct: 366 MEVDGYAPDVVTYTILIEALCKSGDVDRAFDMLDVMTTKGIFPNLHTYNTMICGLLKARR 425

Query: 216 YTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSKSYVLA 275
              A   +E LE   +     T    ++   Y  K  D  +   T + +        + A
Sbjct: 426 LDEA---LELLENMESLGVKPTAFSYVLFIDYYGKSGDPAKAIDTFETMKKRGIMPSIAA 482

Query: 276 IEA----FGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMS 331
             A         ++S AE+++ ++        +  YN ++  Y K G IDKA+ LL EM 
Sbjct: 483 CNASLYTLAETGRISEAEDIFNDLHKCGLSPDSVTYNMLMKCYSKAGQIDKATQLLSEMI 542

Query: 332 MNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIF 391
             GC+P+ +    L    +K+  V+  +       K+    K     P + T   ++   
Sbjct: 543 SKGCEPDVMIINSLINTLYKAGRVDAAW-------KMFGRLKNLKLAPTVVTYNILLTGL 595

Query: 392 AEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKINDPNL--LRRMILGGARPDA 449
            ++G +  A  LF  + ++     T  +N+L+    K    D  L    RM +    PD 
Sbjct: 596 GKEGKILKALELFGSMTESGCPPNTITFNSLLDCLSKNDAVDLALKMFCRMTMMNCNPDV 655

Query: 450 ETYSLL 455
            TY+ +
Sbjct: 656 LTYNTI 661



 Score = 65.5 bits (158), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 64/314 (20%), Positives = 128/314 (40%), Gaps = 21/314 (6%)

Query: 58  YRPKELDYSYLLEFTIKNHGISQGEKLFCCIPKD--YQNELLYNNLVIACLDKGVIKLSL 115
           Y P  + Y+ L+E   K+  + +   +   +     + N   YN ++   L    +  +L
Sbjct: 371 YAPDVVTYTILIEALCKSGDVDRAFDMLDVMTTKGIFPNLHTYNTMICGLLKARRLDEAL 430

Query: 116 EYMKKMRVLG---HSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILM 172
           E ++ M  LG    + SY++F   I      G      +    MK   + P ++  +  +
Sbjct: 431 ELLENMESLGVKPTAFSYVLF---IDYYGKSGDPAKAIDTFETMKKRGIMPSIAACNASL 487

Query: 173 KIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVA-RLYTVAETYVEALEKSMT 231
              A    I     +++D+ +  + P+ V+Y +L   ++ A ++    +   E + K   
Sbjct: 488 YTLAETGRISEAEDIFNDLHKCGLSPDSVTYNMLMKCYSKAGQIDKATQLLSEMISKGCE 547

Query: 232 GNNWSTLDVLII--LYGYLAKGKDLERIWATVQELPNVRSK----SYVLAIEAFGRIAQV 285
                  DV+II  L   L K   ++  W     L N++      +Y + +   G+  ++
Sbjct: 548 P------DVMIINSLINTLYKAGRVDAAWKMFGRLKNLKLAPTVVTYNILLTGLGKEGKI 601

Query: 286 SRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHL 345
            +A EL+  M        T  +NS++    KN  +D A  +   M+M  C P+ +TY  +
Sbjct: 602 LKALELFGSMTESGCPPNTITFNSLLDCLSKNDAVDLALKMFCRMTMMNCNPDVLTYNTI 661

Query: 346 ALGCFKSNLVEEGF 359
             G  +   ++  F
Sbjct: 662 IYGLIREGRIDYAF 675



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 79/343 (23%), Positives = 145/343 (42%), Gaps = 20/343 (5%)

Query: 40   QLNKRALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQGEKLFC------CIPKDYQ 93
               ++ALE+ E  ++     P    Y+ LL+   K+  I++   L+       C P    
Sbjct: 810  NFTEKALELFE-DMKSAGTHPNNFTYNLLLDAHGKSKRINKLYDLYSEMRSRGCEP---- 864

Query: 94   NELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNIL 153
            N + +N ++ A +    +  +L+   ++     S +   +  LI      GR +    I 
Sbjct: 865  NAITHNIIISALVKSNNLNKALDLYYELMSGDFSPTPCTYGPLIDGLLKAGRSEQAMKIF 924

Query: 154  RQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVA 213
             +M      P+   ++IL+        I+   +++  M +  + P+  SY IL     + 
Sbjct: 925  EEMLDYGCGPNSVIYNILINGFGKSGEIDFACELFKKMVKEGIRPDLKSYTILVECLCIT 984

Query: 214  RLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSKS-- 271
                 A  Y E L+  +TG +  T+    I+ G L K + L+   +   E+ N R  S  
Sbjct: 985  GRIDEAVQYFEELK--LTGLDPDTVSYNFIING-LGKSRRLDEALSLFSEMKN-RGISPD 1040

Query: 272  ---YVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLK 328
               Y   I   G   +V  A +++ E+Q V    +   YN++I  +  +G  D+A  + K
Sbjct: 1041 LYTYNALILHLGIAGKVDVAVKMYEELQLVGLEPSVFTYNALIRGHSLSGNKDQAFSVFK 1100

Query: 329  EMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITT 371
            +M + GC PN  T+  L     ++ LV   F A+ +G+  I T
Sbjct: 1101 KMMVVGCSPNTETFAQLPNKYPRAGLVHNPFGAVFIGLFFIFT 1143


>gi|225461407|ref|XP_002282230.1| PREDICTED: pentatricopeptide repeat-containing protein At4g21705,
           mitochondrial [Vitis vinifera]
          Length = 504

 Score =  100 bits (250), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 100/463 (21%), Positives = 207/463 (44%), Gaps = 19/463 (4%)

Query: 5   PRGEPVGS---AFQSWMREGFPVHRGEIFHSINRLRKLQLNKRALEVMEWVIRER--PYR 59
           P G P  S       W+ EG  V   E+   I  LR  +   +ALEV EW+  +   P+ 
Sbjct: 45  PLGTPNLSLVPVLDQWVEEGKKVRDVELHRIIRDLRSRKRYAQALEVSEWMSSKELCPFS 104

Query: 60  PKELDYSYLLEFTIKNHGISQGEKLFCCIPKDYQNELLYNNLVIACLDKGVIKLSLEYMK 119
           P     +  L+   +  G+   E  F  +  + + + +Y  L+   + + VI  SL +++
Sbjct: 105 PSA--RAVQLDLIGQVRGLESAENYFNNMSAEEKIDKMYGALLNCYVRERVIDKSLSHLQ 162

Query: 120 KMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDH 179
           KM+ LG + + L +N L+ L  +  + + IP++L +M+ + ++P   ++ + +       
Sbjct: 163 KMKELGFASTPLPYNGLMCLYINTDQLEKIPDVLSEMQENGISPDNFSYRLCINSYGARS 222

Query: 180 NIEGLMKVYSDMK-RSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTL 238
           ++  + K+  +M+ +S +  + ++Y ++A  +  A L   A  +++  E  +  +     
Sbjct: 223 DLNSMEKILEEMESKSHIHIDWMTYSMVANFYIKAGLNEKALFFLKKAETKLHKDPLG-Y 281

Query: 239 DVLIILYGYLAKGKDLERIW----ATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLE 294
           + LI LY  L    ++ R+W       ++L N   + Y+  + +  ++ ++   E L  E
Sbjct: 282 NHLISLYASLGSKAEMMRLWERRKTASKKLIN---RDYITMLGSLVKLGELEDTEALLKE 338

Query: 295 MQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNL 354
            +S          N+++  +C+ G I+KA  +L+++   G  P   ++  +A G  +   
Sbjct: 339 WESSGNCYDFRVPNTLLIGFCQKGLIEKAESMLRDIVEEGKTPTPNSWSIVAAGYIEKQN 398

Query: 355 VEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTK 414
           +E+ F+ ++  + ++   K     P  +   SI+    +  DV   E     L KA    
Sbjct: 399 MEKAFECMKEAIAVLAENKGWRPKP--KVISSILSWLGDNRDVEEVETFVSAL-KAVIPM 455

Query: 415 YTFVYNTLIKAYVKAKINDPNLLRRMILGGARPDAETYSLLKL 457
              +Y+  I+A ++A      +L  M       D ET  +L L
Sbjct: 456 DREMYHAQIRASIRAGKEVDGILDSMKADKIDEDEETRKILSL 498


>gi|15225409|ref|NP_179663.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75206559|sp|Q9SKU6.1|PP166_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At2g20710, mitochondrial; Flags: Precursor
 gi|4454477|gb|AAD20924.1| hypothetical protein [Arabidopsis thaliana]
 gi|51315392|gb|AAT99801.1| At2g20710 [Arabidopsis thaliana]
 gi|330251965|gb|AEC07059.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 490

 Score =  100 bits (250), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 86/353 (24%), Positives = 157/353 (44%), Gaps = 17/353 (4%)

Query: 7   GEPVGS---AFQSWMREGFPVHRGEIFHSINRLRKLQLNKRALEVMEWVIRERPYRPKEL 63
           G+P  S       W+ +G  V   E+   I  LRK      AL++ +W+   R +   E 
Sbjct: 48  GDPSASIIKVLDGWLDQGNLVKTSELHSIIKMLRKFSRFSHALQISDWMSEHRVHEISEG 107

Query: 64  DYSYLLEFTIKNHGISQGEKLFCCIPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMRV 123
           D +  L+   K  G+ + EK F  IP + +N  LY  L+     K V+  + +  ++M+ 
Sbjct: 108 DVAIRLDLIAKVGGLGEAEKFFETIPMERRNYHLYGALLNCYASKKVLHKAEQVFQEMKE 167

Query: 124 LGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEG 183
           LG     L +N ++ L    G+   +  +LR+M+ + V P + T +  +   +   ++EG
Sbjct: 168 LGFLKGCLPYNVMLNLYVRTGKYTMVEKLLREMEDETVKPDIFTVNTRLHAYSVVSDVEG 227

Query: 184 LMKVYSDMKRSEVEP----NEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWS--- 236
           + K    + R E +     +  +Y   A  +  A L    E  +E L KS    N     
Sbjct: 228 MEKF---LMRCEADQGLHLDWRTYADTANGYIKAGL---TEKALEMLRKSEQMVNAQKRK 281

Query: 237 -TLDVLIILYGYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEM 295
              +VL+  YG   K +++ R+W+  +EL    +  Y+  I A  ++  +   E++  E 
Sbjct: 282 HAYEVLMSFYGAAGKKEEVYRLWSLYKELDGFYNTGYISVISALLKMDDIEEVEKIMEEW 341

Query: 296 QSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALG 348
           ++   L      + +I+ YCK G ++KA  ++  +       +  T+  LALG
Sbjct: 342 EAGHSLFDIRIPHLLITGYCKKGMMEKAEEVVNILVQKWRVEDTSTWERLALG 394


>gi|449438086|ref|XP_004136821.1| PREDICTED: pentatricopeptide repeat-containing protein At2g20710,
           mitochondrial-like [Cucumis sativus]
          Length = 486

 Score =  100 bits (249), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 97/413 (23%), Positives = 179/413 (43%), Gaps = 31/413 (7%)

Query: 7   GEPVGS---AFQSWMREGFPVHRGEIFHSINRLRKLQLNKRALEVMEWVIRERPYRPKEL 63
           G+P  S       W+ EG  V++ ++   I +LR       AL++ EW   ER   P   
Sbjct: 46  GDPRTSIVRVLDQWVEEGRQVNQSDLQKLIKQLRTFGRFNHALQLCEWERNERNKCPSPG 105

Query: 64  DYSYLLEFTIKNHGISQGEKLFCCIPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMRV 123
             +  L    K  G+ Q E+ F  I +  ++  +Y  L+   ++   +K +   M+KMR 
Sbjct: 106 HIAIQLHLISKARGLEQAEEYFSSIGESSRDHKVYGALLHCYVENKNLKKAEAIMQKMRE 165

Query: 124 LGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEG 183
           +G   + L +N ++ L +  G+ + +  ++++M+   +  +  T+++ M   A   +I  
Sbjct: 166 VGFMKTPLSYNAMLNLYAQLGKHEKLDELVKEMEEMGIGHNRFTYNVRMNAYAAASDITN 225

Query: 184 LMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEA---------LEKS--MTG 232
           + K+ S M   E +P      ++AT   +   +TV   Y +A         L+K+  + G
Sbjct: 226 MEKLLSKM---EADP------LVATDWHI--YFTVGNGYFKAGLSENSISMLKKAEQLIG 274

Query: 233 N--NWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEE 290
           +   W     L+ LY  +    ++ R+W     L    +  Y+  I +  ++  +  AE 
Sbjct: 275 DKQKWLAYQYLMTLYAAIGNKDEVYRVWNLYTNLQKRFNSGYLCIISSLMKLDDIDGAER 334

Query: 291 LWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCF 350
           +  E +S       +  N +I+ YC  GF+DKA   +  +  NG +P A  +  LA G  
Sbjct: 335 ILKEWESGDTSFDFKIPNMMINSYCTKGFVDKAEAYISRLIENGKEPRAYAWDRLASGYH 394

Query: 351 KSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENL 403
            + L     KA E   K I+    R   P  +   + +E     G+V  AE +
Sbjct: 395 SNGLTN---KAAETLKKAISVSPPRWK-PNYDILAACLEYLKTNGNVELAEEI 443


>gi|223974825|gb|ACN31600.1| unknown [Zea mays]
          Length = 515

 Score =  100 bits (249), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 75/334 (22%), Positives = 155/334 (46%), Gaps = 2/334 (0%)

Query: 10  VGSAFQSWMREGFPVHRGEIFHSINRLRKLQLNKRALEVMEWVIRERPYRPKELDYSYLL 69
           V      W+REG      ++   +  LRK + +  ALE+M+W++  R       +++  L
Sbjct: 65  VSRVLNKWVREGGATRSDDLVKHVKELRKYKRHAHALELMDWMVNARGMNMSHTNHAIRL 124

Query: 70  EFTIKNHGISQGEKLFCCIPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSIS 129
           E   K  G+   E  F  +P   +N   Y +L+       + + +    ++M  LG   S
Sbjct: 125 ELIYKVRGLEAAENYFANLPDPAKNHRTYGSLLSCYCSAKMEEKATNLYRQMDELGIWSS 184

Query: 130 YLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYS 189
            L  N L+ L     + + + ++  +MK   V P+  T  ILM   A  + I+ + ++  
Sbjct: 185 TLPINNLMSLYMKLDQYRKVVSLFEEMKLKNVKPNSLTCCILMTSYAALNKIDDIEELLK 244

Query: 190 DMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTG-NNWSTLDVLIILYGYL 248
           +M   +V     +Y  LA+ +  A  +  AE+ ++ LE  ++  ++    D L+ LY  L
Sbjct: 245 EMVEKDVTLGWSAYSTLASIYVNAGQFGKAESALKKLEGLISAHDDRQPFDFLLSLYASL 304

Query: 249 AKGKDLERIWATVQ-ELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQY 307
               ++ R+W  ++ +   V + SY+  + A  ++  + R +++++E +S  +    +  
Sbjct: 305 GNLSEVNRVWNVIKSKFSKVTNTSYLGMLHALYKLNDIDRMKQIYMEWESNYETFDVKLT 364

Query: 308 NSVISVYCKNGFIDKASGLLKEMSMNGCKPNAIT 341
           N +I  + K G  ++A  L++++  NG + +  T
Sbjct: 365 NMMIRSHLKVGMTEEAEMLVEKVKENGAEFDTKT 398


>gi|225459164|ref|XP_002283946.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g27460-like [Vitis vinifera]
          Length = 475

 Score =  100 bits (248), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 98/456 (21%), Positives = 207/456 (45%), Gaps = 9/456 (1%)

Query: 4   LPRGEPVGSAFQSWMREGFPVHRGEIFHSINRLRKLQLNKRALEVMEWVIRERPYRPKEL 63
            PR     +  Q+W+ +G  V   ++ +   +L K + +K ALE++ W+  +  ++    
Sbjct: 22  FPR-RSATAVLQNWIDQGHKVTASDLRNVSRQLLKSKRHKHALEILAWMEAQNRFQMSAA 80

Query: 64  DYSYLLEFTIKNHGISQGEKLFCCIPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMRV 123
           D++  LE  IK   +++ E+ F  +P     +     L+ A + +  I+ +   M K+  
Sbjct: 81  DHAIRLELIIKIQSLAEAEEYFEHLPNSSSRKAACLPLLHAYVKERAIEKAEALMLKLND 140

Query: 124 LGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEG 183
           LG ++S   FN ++ L  +  + + +P ++ QMK +K+  +V ++++ M   +    +  
Sbjct: 141 LGLTVSPHPFNEMMKLYMATSQFERVPTVILQMKQNKIPLNVLSYNLWMSACSEVSGLAS 200

Query: 184 LMKVYSDM-KRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLI 242
              VY DM     VE    +   LA  +  + L   A   ++  EK ++ +N      LI
Sbjct: 201 AEMVYKDMVDDKNVEVGWSTLSTLANIYLKSGLIKKANLALKNAEKKLSAHNRLGYFFLI 260

Query: 243 ILYGYLAKGKDLERIWATVQELPN-VRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQL 301
            +Y  L+  +++ R+W   +++   + S +Y+  +    ++  ++ AE ++ E +S    
Sbjct: 261 TMYASLSNKEEVLRLWEASKKVGGRITSTNYMCILLCLVKLGDIAEAERIFREWESKCWK 320

Query: 302 KATEQYNSVISVYCKNGFIDKASGL-LKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFK 360
                 N ++  Y + G +DKA  L L  +   GC PN  T+  L  G  KS  +++   
Sbjct: 321 YDIRVSNVLLGAYMRTGSMDKAESLHLHTLERGGC-PNYKTWEILMEGWMKSQNMDKAIN 379

Query: 361 ALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYN 420
           A++ G  ++     R   P      +I     E G+V +     + + +    K   +Y 
Sbjct: 380 AMKKGFSMLKHCDWR---PNHGLVTAIARYLEEHGNVNDLNQYVKVIHQLGVAKLP-LYK 435

Query: 421 TLIKAYVKAKINDPNLLRRMILGGARPDAETYSLLK 456
           +L++ ++  +    ++L+ M       D ET +L++
Sbjct: 436 SLLRMHLLFQRPVFDILKMMEKDEIEMDDETSALVQ 471


>gi|115436132|ref|NP_001042824.1| Os01g0301700 [Oryza sativa Japonica Group]
 gi|14495231|dbj|BAB60950.1| putative DNA-binding protein [Oryza sativa Japonica Group]
 gi|113532355|dbj|BAF04738.1| Os01g0301700 [Oryza sativa Japonica Group]
 gi|125525550|gb|EAY73664.1| hypothetical protein OsI_01547 [Oryza sativa Indica Group]
 gi|125570062|gb|EAZ11577.1| hypothetical protein OsJ_01442 [Oryza sativa Japonica Group]
 gi|215713519|dbj|BAG94656.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 504

 Score =  100 bits (248), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 96/456 (21%), Positives = 197/456 (43%), Gaps = 14/456 (3%)

Query: 4   LPRGEPVGSAFQSWMREGFPVHRGEIFHSINRLRKLQLNKRALEVMEWVIRERPYRPKEL 63
           LP G  V      W+RE  P+   ++   + R RK + NK AL++M+W +  R    +  
Sbjct: 51  LPSGGMV-EELGRWLRERRPLSEEQVLFCVRRFRKFKQNKHALQLMDW-MEARGVNLELK 108

Query: 64  DYSYLLEFTIKNHGISQGEKLFCCIPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMRV 123
            ++  L+   K +GI   E+ F  +P  ++++  Y+ L+    +  + +  LE  + M+ 
Sbjct: 109 HHALRLDLVSKLNGIHAAEEYFGSLPDIFRSKQTYSTLLNCYAEHRMAEKGLELYENMKA 168

Query: 124 LGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEG 183
           +      LV+N L+ L     + + IP  + +M+   + P+  ++ +L +     ++IE 
Sbjct: 169 MNIVSDILVYNNLMCLYLKTDQPEKIPTTVVKMQESGIQPNKFSYFVLTESYIMMNDIES 228

Query: 184 LMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLII 243
             KV  +++     P  + Y  LA  +   + +  AE  ++  E+ +  ++  +   L+ 
Sbjct: 229 AEKVLKELQEVNSVPWSL-YATLANGYNKLQQFDKAEFTLKKAEEVLDKHDVFSWHCLLS 287

Query: 244 LYGYLAKGKDLERIWATVQE-LPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLK 302
            Y       +++RIW +++       ++SY++ ++A  ++      ++++ E +S  +  
Sbjct: 288 HYANSGNLSEVKRIWESLKSAFKKCTNRSYLVMLKALKKLDDFDTLQQIFQEWESSHEHY 347

Query: 303 ATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKAL 362
             +  N +I  Y   G +DKA   +++ +M     N  T+      C  +    E  K  
Sbjct: 348 DMKIPNIIIQAYLDKGMVDKAEA-MRQTTMAQDHSNYRTF------CIFAEFYLEKSKMN 400

Query: 363 ELGMKLITTKKVRSSTPWLETTL--SIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYN 420
           E        KK+     W+   L    ++ F +  DV   E   E LK          Y 
Sbjct: 401 EALQVWKDAKKMVKGQDWVPEKLVNRYLKHFEDSKDVDGMETFCECLKNLGRLDAE-AYE 459

Query: 421 TLIKAYVKAKINDPNLLRRMILGGARPDAETYSLLK 456
            LI+ Y+     +P++ +RM +       E +  LK
Sbjct: 460 ALIRTYISVGRTNPSIPQRMEVDRVDIRPEMFESLK 495


>gi|302143027|emb|CBI20322.3| unnamed protein product [Vitis vinifera]
          Length = 687

 Score =  100 bits (248), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 98/460 (21%), Positives = 206/460 (44%), Gaps = 13/460 (2%)

Query: 5   PRGEPVGS---AFQSWMREGFPVHRGEIFHSINRLRKLQLNKRALEVMEWVIRER--PYR 59
           P G P  S       W+ EG  V   E+   I  LR  +   +ALEV EW+  +   P+ 
Sbjct: 45  PLGTPNLSLVPVLDQWVEEGKKVRDVELHRIIRDLRSRKRYAQALEVSEWMSSKELCPFS 104

Query: 60  PKELDYSYLLEFTIKNHGISQGEKLFCCIPKDYQNELLYNNLVIACLDKGVIKLSLEYMK 119
           P     +  L+   +  G+   E  F  +  + + + +Y  L+   + + VI  SL +++
Sbjct: 105 PSA--RAVQLDLIGQVRGLESAENYFNNMSAEEKIDKMYGALLNCYVRERVIDKSLSHLQ 162

Query: 120 KMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDH 179
           KM+ LG + + L +N L+ L  +  + + IP++L +M+ + ++P   ++ + +       
Sbjct: 163 KMKELGFASTPLPYNGLMCLYINTDQLEKIPDVLSEMQENGISPDNFSYRLCINSYGARS 222

Query: 180 NIEGLMKVYSDMK-RSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTL 238
           ++  + K+  +M+ +S +  + ++Y ++A  +  A L   A  +++  E  +  +     
Sbjct: 223 DLNSMEKILEEMESKSHIHIDWMTYSMVANFYIKAGLNEKALFFLKKAETKLHKDPLG-Y 281

Query: 239 DVLIILYGYLAKGKDLERIWATVQELP-NVRSKSYVLAIEAFGRIAQVSRAEELWLEMQS 297
           + LI LY  L    ++ R+W   +     + ++ Y+  + +  ++ ++   E L  E +S
Sbjct: 282 NHLISLYASLGSKAEMMRLWERRKTASKKLINRDYITMLGSLVKLGELEDTEALLKEWES 341

Query: 298 VKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEE 357
                     N+++  +C+ G I+KA  +L+++   G  P   ++  +A G  +   +E+
Sbjct: 342 SGNCYDFRVPNTLLIGFCQKGLIEKAESMLRDIVEEGKTPTPNSWSIVAAGYIEKQNMEK 401

Query: 358 GFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTF 417
            F+ ++  + ++   K     P  +   SI+    +  DV   E     L KA       
Sbjct: 402 AFECMKEAIAVLAENKGWRPKP--KVISSILSWLGDNRDVEEVETFVSAL-KAVIPMDRE 458

Query: 418 VYNTLIKAYVKAKINDPNLLRRMILGGARPDAETYSLLKL 457
           +Y+  I+A ++A      +L  M       D ET  +L L
Sbjct: 459 MYHAQIRASIRAGKEVDGILDSMKADKIDEDEETRKILSL 498


>gi|302142021|emb|CBI19224.3| unnamed protein product [Vitis vinifera]
          Length = 560

 Score =  100 bits (248), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 84/369 (22%), Positives = 173/369 (46%), Gaps = 5/369 (1%)

Query: 4   LPRGEPVGSAFQSWMREGFPVHRGEIFHSINRLRKLQLNKRALEVMEWVIRERPYRPKEL 63
            PR     +  Q+W+ +G  V   ++ +   +L K + +K ALE++ W+  +  ++    
Sbjct: 49  FPR-RSATAVLQNWIDQGHKVTASDLRNVSRQLLKSKRHKHALEILAWMEAQNRFQMSAA 107

Query: 64  DYSYLLEFTIKNHGISQGEKLFCCIPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMRV 123
           D++  LE  IK   +++ E+ F  +P     +     L+ A + +  I+ +   M K+  
Sbjct: 108 DHAIRLELIIKIQSLAEAEEYFEHLPNSSSRKAACLPLLHAYVKERAIEKAEALMLKLND 167

Query: 124 LGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEG 183
           LG ++S   FN ++ L  +  + + +P ++ QMK +K+  +V ++++ M   +    +  
Sbjct: 168 LGLTVSPHPFNEMMKLYMATSQFERVPTVILQMKQNKIPLNVLSYNLWMSACSEVSGLAS 227

Query: 184 LMKVYSDM-KRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLI 242
              VY DM     VE    +   LA  +  + L   A   ++  EK ++ +N      LI
Sbjct: 228 AEMVYKDMVDDKNVEVGWSTLSTLANIYLKSGLIKKANLALKNAEKKLSAHNRLGYFFLI 287

Query: 243 ILYGYLAKGKDLERIWATVQELPN-VRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQL 301
            +Y  L+  +++ R+W   +++   + S +Y+  +    ++  ++ AE ++ E +S    
Sbjct: 288 TMYASLSNKEEVLRLWEASKKVGGRITSTNYMCILLCLVKLGDIAEAERIFREWESKCWK 347

Query: 302 KATEQYNSVISVYCKNGFIDKASGL-LKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFK 360
                 N ++  Y + G +DKA  L L  +   GC PN  T+  L  G  KS  +++   
Sbjct: 348 YDIRVSNVLLGAYMRTGSMDKAESLHLHTLERGGC-PNYKTWEILMEGWMKSQNMDKAIN 406

Query: 361 ALELGMKLI 369
           A++ G  +I
Sbjct: 407 AMKKGFSII 415


>gi|224121680|ref|XP_002330626.1| predicted protein [Populus trichocarpa]
 gi|222872230|gb|EEF09361.1| predicted protein [Populus trichocarpa]
          Length = 441

 Score =  100 bits (248), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 97/401 (24%), Positives = 182/401 (45%), Gaps = 18/401 (4%)

Query: 14  FQSWMREGFPVHRGEIFHSINRLRKLQLNKRALEVMEWVIRERPYRPKELDYSYLLEFTI 73
            + W++EG  + + ++ + I   R+ +    AL++ +W+  ER       D++  L+   
Sbjct: 24  IEQWLKEGNSIKQSDLQNFIKLFRRHRRFSHALQISQWMSDERGSEQSPGDFAVRLDLIS 83

Query: 74  KNHGISQGEKLFCCIPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVF 133
           K HG+ Q E+ +  IP   +   +Y  L+     K  ++ +   M+KMR LG  +  L +
Sbjct: 84  KVHGLEQAEEYYNSIPDHLRGTQVYGALLNCYAHKRRLEKAEATMQKMRELG-LVQTLSY 142

Query: 134 NRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKR 193
           N ++ L S  GR + +  ++++M+   V   + TF+I +       NIE + K+   M+ 
Sbjct: 143 NVMLSLYSHMGRYEKLEALVKEMEEKGVNSDIYTFNIRLHAYVATSNIEEMEKLLMKMET 202

Query: 194 SEVEPNEVSYCILATAHAVARLYTVAETYV-----EALEKSMTGNNWS-TLDVLIILYGY 247
             +  N   +   A A+   +   + ++ V     E L   M G   +   ++L+ LYG 
Sbjct: 203 DSL-INIDFHTFFAVANGYLKAGLLEKSIVMLKRAEELTVPMVGTTKAHAYEMLLTLYGS 261

Query: 248 LAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQY 307
                 + R+W + +    + + +Y+  I +  R+  +  AE +  E  S K L      
Sbjct: 262 AGNKDGVYRVWNSYKNTGRIFNSTYICMINSLMRLGDIDGAEWISEEWVSRKTLYDIRIP 321

Query: 308 NSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGC-FKSNLVEEGFKALELGM 366
           N++I  Y + G   KA   + ++  +G +  A ++ HLA G  F   +     KA+E   
Sbjct: 322 NTMIRAYSRKGLWKKAEEYVNKIVESGMQLEASSWDHLATGYHFGGQMA----KAVETLK 377

Query: 367 KLIT-TKKVRSSTPW-LETTLSIIEIFAEKGDVGNAENLFE 405
           K I+ +K      P+ L+T L  +E    KGD   AE L +
Sbjct: 378 KAISISKPGWKPNPYTLKTCLWYLE---SKGDEEAAEELLK 415


>gi|297842227|ref|XP_002888995.1| hypothetical protein ARALYDRAFT_476621 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297334836|gb|EFH65254.1| hypothetical protein ARALYDRAFT_476621 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 863

 Score = 99.8 bits (247), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 105/435 (24%), Positives = 185/435 (42%), Gaps = 69/435 (15%)

Query: 26  RGEIFHSINRLR-KLQLNKRALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQGEKL 84
           RG I   ++  + KL LN  AL   E+  R    R   L + Y+             ++ 
Sbjct: 89  RGSIARCLDIFKNKLSLNDFALVFKEFAGRGDWQRSLRL-FKYM-------------QRQ 134

Query: 85  FCCIPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPG 144
             C P    NE +Y  ++     +G++   LE   +M   G S S   +  LI      G
Sbjct: 135 IWCKP----NEHIYTIMISLLGREGLLDKCLEVFDEMPSQGVSRSVFSYTALINAYGRNG 190

Query: 145 RRKTIPNILRQMKADKVAPHVSTFHILMKIEANDH-NIEGLMKVYSDMKRSEVEPNEVSY 203
           R +T   +L +MK DK++P + T++ ++   A    + EGL+ ++++M+   ++P+ V+Y
Sbjct: 191 RYETSLELLDRMKNDKISPSILTYNTVINACARGGLDWEGLLGLFAEMRHEGIQPDIVTY 250

Query: 204 CILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQE 263
             L +A A+  L                                   G + E ++ T+ +
Sbjct: 251 NTLLSACAIRGL-----------------------------------GDEAEMVFRTMND 275

Query: 264 ---LPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFI 320
              +P++ + S++  +E FG++ ++ +  +L  EM S   L     YN ++  Y K+G I
Sbjct: 276 GGIVPDLTTYSHL--VETFGKLRRLEKVSDLLSEMASGGSLPDITSYNVLLEAYAKSGSI 333

Query: 321 DKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPW 380
            +A G+  +M   GC PNA TY  L L  F  +   +  + L L MK   T       P 
Sbjct: 334 KEAMGVFHQMQAAGCTPNANTYSVL-LNLFGQSGRYDDVRQLFLEMKSSNTD------PD 386

Query: 381 LETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKINDP--NLLR 438
             T   +IE+F E G       LF ++ + N       Y  +I A  K  +++    +L+
Sbjct: 387 AATYNILIEVFGEGGYFKEVVTLFHDMVEENIEPDMETYEGIIFACGKGGLHEDARKILQ 446

Query: 439 RMILGGARPDAETYS 453
            M      P ++ Y+
Sbjct: 447 YMTANDIVPSSKAYT 461



 Score = 62.0 bits (149), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 65/314 (20%), Positives = 130/314 (41%), Gaps = 14/314 (4%)

Query: 133 FNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMK 192
           +N L+   +  G  K    +  QM+A    P+ +T+ +L+ +       + + +++ +MK
Sbjct: 320 YNVLLEAYAKSGSIKEAMGVFHQMQAAGCTPNANTYSVLLNLFGQSGRYDDVRQLFLEMK 379

Query: 193 RSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGK 252
            S  +P+  +Y IL         +    T    + +     +  T + +I   G     +
Sbjct: 380 SSNTDPDAATYNILIEVFGEGGYFKEVVTLFHDMVEENIEPDMETYEGIIFACGKGGLHE 439

Query: 253 DLERI--WATVQEL-PNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNS 309
           D  +I  + T  ++ P+  SK+Y   IEAFG+ A    A   +  M  V    + E Y+S
Sbjct: 440 DARKILQYMTANDIVPS--SKAYTGVIEAFGQAALYEEALVAFNTMHEVGSNPSIETYHS 497

Query: 310 VISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLI 369
           ++  + + G + ++  +L  +  +G   N  T+        +    EE  K        +
Sbjct: 498 LLYSFARGGLVKESEAILSRLVDSGIPRNRDTFNAQIEAYKQGGKFEEAVKT------YV 551

Query: 370 TTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKA 429
             +K R   P   T  +++ +++    V      FEE+K ++       Y  ++  Y K 
Sbjct: 552 DMEKSRCD-PDERTLEAVLSVYSFARLVDECREQFEEMKASDILPSIMCYCMMLAVYGKT 610

Query: 430 -KINDPN-LLRRMI 441
            + +D N LL  M+
Sbjct: 611 ERWDDVNELLEEML 624



 Score = 61.6 bits (148), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 59/224 (26%), Positives = 97/224 (43%), Gaps = 16/224 (7%)

Query: 240 VLIILYGYLAKGKDLERIWATVQELPN---VRSK-SYVLAIEAFGRIAQVSRAEELWLEM 295
           +  I+   L +   L++      E+P+    RS  SY   I A+GR  +   + EL   M
Sbjct: 143 IYTIMISLLGREGLLDKCLEVFDEMPSQGVSRSVFSYTALINAYGRNGRYETSLELLDRM 202

Query: 296 QSVKQLKATEQYNSVISVYCKNGFIDKAS--GLLKEMSMNGCKPNAITYRHLALGCFKSN 353
           ++ K   +   YN+VI+  C  G +D     GL  EM   G +P+ +TY  L   C    
Sbjct: 203 KNDKISPSILTYNTVINA-CARGGLDWEGLLGLFAEMRHEGIQPDIVTYNTLLSACAIRG 261

Query: 354 LVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYT 413
           L +E     E+  + +    +    P L T   ++E F +   +    +L  E+      
Sbjct: 262 LGDEA----EMVFRTMNDGGI---VPDLTTYSHLVETFGKLRRLEKVSDLLSEMASGGSL 314

Query: 414 KYTFVYNTLIKAYVKA-KINDP-NLLRRMILGGARPDAETYSLL 455
                YN L++AY K+  I +   +  +M   G  P+A TYS+L
Sbjct: 315 PDITSYNVLLEAYAKSGSIKEAMGVFHQMQAAGCTPNANTYSVL 358



 Score = 39.3 bits (90), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 63/309 (20%), Positives = 115/309 (37%), Gaps = 75/309 (24%)

Query: 98  YNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMK 157
           YN L+ A    G IK ++    +M+  G + +   ++ L+ L    GR   +  +  +MK
Sbjct: 320 YNVLLEAYAKSGSIKEAMGVFHQMQAAGCTPNANTYSVLLNLFGQSGRYDDVRQLFLEMK 379

Query: 158 ADKVAPHVSTFHILMKI---------------EANDHNIEGLMKVYSD------------ 190
           +    P  +T++IL+++               +  + NIE  M+ Y              
Sbjct: 380 SSNTDPDAATYNILIEVFGEGGYFKEVVTLFHDMVEENIEPDMETYEGIIFACGKGGLHE 439

Query: 191 --------MKRSEVEPNEVSYCILATAHAVARLYTVA----------------ETYVEAL 226
                   M  +++ P+  +Y  +  A   A LY  A                ETY   L
Sbjct: 440 DARKILQYMTANDIVPSSKAYTGVIEAFGQAALYEEALVAFNTMHEVGSNPSIETYHSLL 499

Query: 227 EKSMTGN-------------------NWSTLDVLIILYGYLAKGKDLERIWATVQEL--- 264
                G                    N  T +  I  Y    K ++  + +  +++    
Sbjct: 500 YSFARGGLVKESEAILSRLVDSGIPRNRDTFNAQIEAYKQGGKFEEAVKTYVDMEKSRCD 559

Query: 265 PNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKAS 324
           P+ R+   VL++ +F R+  V    E + EM++   L +   Y  +++VY K    D  +
Sbjct: 560 PDERTLEAVLSVYSFARL--VDECREQFEEMKASDILPSIMCYCMMLAVYGKTERWDDVN 617

Query: 325 GLLKEMSMN 333
            LL+EM  N
Sbjct: 618 ELLEEMLSN 626


>gi|388517969|gb|AFK47046.1| unknown [Lotus japonicus]
          Length = 496

 Score = 99.4 bits (246), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 101/441 (22%), Positives = 197/441 (44%), Gaps = 16/441 (3%)

Query: 5   PRGEPVGSAFQSWMREGFPVHRGEIFHSINRLRKLQLNKRALEVMEWVIRERPYRPKELD 64
           PR  P+      W+  G  + + ++   I RL   +    AL+V EW+  ER Y      
Sbjct: 46  PR-TPMAPILNQWVEGGGDITQIQLQRLITRLAYFRRFTHALQVSEWMSNERNYDLSSGL 104

Query: 65  YSYLLEFTIKNHGISQGEKLFCCIPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMRVL 124
            +  +    K HG+ + E  F  IP D +   +Y +L+    +   ++ +   MKK++ L
Sbjct: 105 IAKRIHLISKVHGLKKAEDFFQGIPDDKRGFKIYASLLSCYAEHKSLEEAEAIMKKIKEL 164

Query: 125 GHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGL 184
                 + +N L+ L +  G+ + +  ++++MK + +  + +TF I +       ++EG+
Sbjct: 165 RPMHLTVCYNILLKLYAQKGKYEKLDRLMQEMKENDLC-NGATFTIRLNAYVAAKDVEGM 223

Query: 185 MKVYSDMKRSEVEP----NEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWS-TLD 239
            K+   M   E +P    +  +Y   A  +  A     A   ++  E+S+ G       +
Sbjct: 224 EKLLMQM---EADPMATVDWYTYSTAANGYLKAGNVEKALAALKKSEQSVKGKKLRLAYE 280

Query: 240 VLIILYGYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVK 299
            L   Y  +    ++ R+W  ++ L N  + SY+  + +  ++     AE++  E +S  
Sbjct: 281 SLQSTYAAIGNKDEVYRLWNRIKNLQNCWNSSYICMLSSLLKLDDFDGAEKILAEWESEH 340

Query: 300 QLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGF 359
           +   T   N +I+ YCK G +DKA   ++++  +G K +  ++  +A G    N +E   
Sbjct: 341 KNFDTRIPNLMITAYCKRGLLDKAEAYIQKLLDSGKKLDGSSWDRMAAGYHMDNDME--- 397

Query: 360 KALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVY 419
           KA++   K I   +     P   T ++ I    EK D+ +A  + +  K+  + K T  Y
Sbjct: 398 KAVQTMKKAILANRP-GWRPSPSTLVACITYLKEKLDLESALEILKLCKEDGHIKIT-TY 455

Query: 420 NTLIKAYVKAKINDPNLLRRM 440
           + L+ +Y   +I D   L  M
Sbjct: 456 DGLV-SYAHGEIPDKEALDLM 475


>gi|343172216|gb|AEL98812.1| pentatricopeptide repeat-containing protein, partial [Silene
           latifolia]
          Length = 359

 Score = 99.4 bits (246), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 76/283 (26%), Positives = 139/283 (49%), Gaps = 6/283 (2%)

Query: 64  DYSYLLEFTIKNHGISQGEKLFCCIPKDYQNELLYNNLV-IACLDKGVIKLSLE-YMKKM 121
           D +  L+   K HG++  E  F  +P+  +N   Y  L+ I C  K +I    E  M+KM
Sbjct: 22  DQAIHLDLIGKTHGVAAAENYFIDLPESSKNIECYGALLNIYC--KELIPDKAEALMEKM 79

Query: 122 RVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNI 181
           + LG  I+ + +N L+ L S  G  + +P ++++MKA  +     T+++ M+  A   +I
Sbjct: 80  KELGLPITAMSYNSLMTLYSKTGLPEKVPALVQEMKASDIMLQTYTYNVWMRALAAVKDI 139

Query: 182 EGLMKVYSDMKRS-EVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDV 240
            G+ +V  +MKR   V  +  +Y  LA+ +  ++++  AE  ++ LEK  T    S    
Sbjct: 140 YGVERVLDEMKRDGRVAEDWTTYSNLASIYVESKMFDKAENALKELEKRNTSRELSPYQF 199

Query: 241 LIILYGYLAKGKDLERIWATVQ-ELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVK 299
           L+ LYG      ++ R+W +++   P   + +Y+  I+    +  +  AE+ + + +S  
Sbjct: 200 LLTLYGKTGNLIEVYRLWRSLRLAFPKTPNVAYLNMIQRLVTLKDLKGAEKCFADWESSC 259

Query: 300 QLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITY 342
                   N ++  Y K+G + +A  L K     G KPNA T+
Sbjct: 260 TNYDIRIANVLMGAYIKDGSLQQAKELKKRACKRGAKPNAKTW 302



 Score = 38.5 bits (88), Expect = 7.1,   Method: Compositional matrix adjust.
 Identities = 40/171 (23%), Positives = 82/171 (47%), Gaps = 14/171 (8%)

Query: 266 NVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASG 325
           N+      + ++  G+   V+ AE  ++++   +  K  E Y +++++YCK    DKA  
Sbjct: 17  NMTINDQAIHLDLIGKTHGVAAAENYFIDLP--ESSKNIECYGALLNIYCKELIPDKAEA 74

Query: 326 LLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLET-T 384
           L+++M   G    A++Y  L     K+ L E+   AL         +++++S   L+T T
Sbjct: 75  LMEKMKELGLPITAMSYNSLMTLYSKTGLPEK-VPAL--------VQEMKASDIMLQTYT 125

Query: 385 LSI-IEIFAEKGDVGNAENLFEELKKANYTKYTF-VYNTLIKAYVKAKIND 433
            ++ +   A   D+   E + +E+K+       +  Y+ L   YV++K+ D
Sbjct: 126 YNVWMRALAAVKDIYGVERVLDEMKRDGRVAEDWTTYSNLASIYVESKMFD 176


>gi|242096944|ref|XP_002438962.1| hypothetical protein SORBIDRAFT_10g029030 [Sorghum bicolor]
 gi|241917185|gb|EER90329.1| hypothetical protein SORBIDRAFT_10g029030 [Sorghum bicolor]
          Length = 503

 Score = 99.0 bits (245), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 84/396 (21%), Positives = 183/396 (46%), Gaps = 12/396 (3%)

Query: 19  REGFPVHRGEIFHSINRLRKLQLNKRALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGI 78
           R G  +   E+   +  LR+   +++ALEV EW+  +   +    D++  L+     HG+
Sbjct: 76  RSGKRLRPCELHFVVKDLRRRHRHRQALEVSEWMNLKGHVKFLPKDHAVHLDLIGHIHGV 135

Query: 79  SQGEKLFCCIPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLII 138
              E  F  +    + E  Y  L+     + ++  +L + +KM+ LG   + L ++ L+I
Sbjct: 136 GAAETYFNNLSDKDKTEKPYGALLYCYTRECLVDKALAHFQKMKELGFVFTPLPYSNLMI 195

Query: 139 LNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMK-RSEVE 197
           L ++  + + +P+++ +MK++ + P+  +++I +       +  GL     +M+  S+V 
Sbjct: 196 LYANVEQHERVPSVMAEMKSNGIVPNNFSYNICINAYGTRADFSGLENTLEEMEFASQVV 255

Query: 198 PNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERI 257
            +  +Y  +A+ +    L   A + ++  E  M   +      LI LYG+L    +++R+
Sbjct: 256 VDWRTYADVASHYIKGDLREKAYSALQKAEAKMDEKDSFAYSHLISLYGHLGDKSEIKRL 315

Query: 258 WA-TVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCK 316
           W   + +     +K Y   +    ++ +++ AE+L  + +S K     +  N ++  YC+
Sbjct: 316 WVLQMLKCKGCINKGYKYMLTVLVKLDEIAEAEDLLKKWESSKNEFDFKVPNILLKGYCQ 375

Query: 317 NGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRS 376
            G +DKA  LL      G KP+A ++  +A    +   V   ++  +  + +        
Sbjct: 376 WGLLDKAEALLDGFLRKGKKPSATSWAIVASAYAEKGDVPRAYELTKRALSMCV-----P 430

Query: 377 STPWLETTLSIIEI----FAEKGDVGNAENLFEELK 408
            + W+    S+IE+      ++G+V + E   + LK
Sbjct: 431 DSGWIPEP-SMIEVILKYLGDEGEVKDVEAFIDLLK 465


>gi|168049795|ref|XP_001777347.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162671323|gb|EDQ57877.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 621

 Score = 98.6 bits (244), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 83/300 (27%), Positives = 134/300 (44%), Gaps = 16/300 (5%)

Query: 162 APHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSY-CILATAHAVARLYTVAE 220
           +P+V T++ L+   A     E    ++ ++K ++  P+ VSY C++ +     +     E
Sbjct: 6   SPNVVTYNSLLNALAKAGQCEEAQLLFEELKAAKWTPDVVSYSCLINSLGRAGKWEAALE 65

Query: 221 TYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQE---LPNVRSKSYVLAIE 277
              E   K    N W T + L+   G   +  +  R+ A +++   +P+VR  +Y   I 
Sbjct: 66  VVAEMQAKGCKPNLW-TYNTLVDCLGKAGQFDEALRLLAEMRDNGCVPDVR--TYNCLIS 122

Query: 278 AFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKP 337
             G+  ++S A  L+ EM+    +  T  YNS+I    K G   KA  LL+EM  +GC P
Sbjct: 123 TLGKAGRLSEAFTLFAEMRERGCVPDTFTYNSLIYGLGKVGRSQKAMELLEEMERHGCPP 182

Query: 338 NAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDV 397
           + +TY  L  G  K     + F       KL    K R   P   T  ++++   + G V
Sbjct: 183 DVMTYSSLITGLGKDGETVKAF-------KLFQEMKRRGRKPDSITFTALMDALGKAGRV 235

Query: 398 GNAENLFEELKKANYTKYTFVYNTLIKAYVKAK--INDPNLLRRMILGGARPDAETYSLL 455
            +A  L +E+K+         YN LI  + K    +   NLL  M   G +PD  TYS L
Sbjct: 236 DDALELLDEMKERGVKPGVVTYNALIAGFGKVGDLVEAYNLLDEMKRNGCKPDVVTYSCL 295



 Score = 84.0 bits (206), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 87/363 (23%), Positives = 151/363 (41%), Gaps = 20/363 (5%)

Query: 98  YNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMK 157
           Y+ L+ +    G  + +LE + +M+  G   +   +N L+      G+      +L +M+
Sbjct: 47  YSCLINSLGRAGKWEAALEVVAEMQAKGCKPNLWTYNTLVDCLGKAGQFDEALRLLAEMR 106

Query: 158 ADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYT 217
            +   P V T++ L+        +     ++++M+     P+  +Y  L           
Sbjct: 107 DNGCVPDVRTYNCLISTLGKAGRLSEAFTLFAEMRERGCVPDTFTYNSLIYGLGKVGRSQ 166

Query: 218 VAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWA--TVQELPNVRSK----S 271
            A   +E +E+     +  T   LI        GKD E + A    QE+     K    +
Sbjct: 167 KAMELLEEMERHGCPPDVMTYSSLIT-----GLGKDGETVKAFKLFQEMKRRGRKPDSIT 221

Query: 272 YVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMS 331
           +   ++A G+  +V  A EL  EM+          YN++I+ + K G + +A  LL EM 
Sbjct: 222 FTALMDALGKAGRVDDALELLDEMKERGVKPGVVTYNALIAGFGKVGDLVEAYNLLDEMK 281

Query: 332 MNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIF 391
            NGCKP+ +TY  L  G  K++ ++E  + L+   K           P   T  ++I   
Sbjct: 282 RNGCKPDVVTYSCLITGLIKASQLDEACQVLKKMEK-------EGCPPDTITYNTLINGL 334

Query: 392 AEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKINDPN--LLRRMILGGARPDA 449
            + G + +A  LF+ +K          Y+TLI A  KA   +    L   M   G +PD 
Sbjct: 335 GKAGLLNDAGRLFDRMKSKGCNPDVVTYSTLITALGKAARVESACVLFEEMESVGIQPDL 394

Query: 450 ETY 452
            TY
Sbjct: 395 FTY 397



 Score = 82.4 bits (202), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 116/449 (25%), Positives = 183/449 (40%), Gaps = 59/449 (13%)

Query: 53  IRERPYRPKELDYSYLLEFTIKNHGISQG--------EKLFCCIPKDYQNELLYNNLVIA 104
           +RER   P    Y+ L+ + +   G SQ         E+  C  P D    + Y++L+  
Sbjct: 140 MRERGCVPDTFTYNSLI-YGLGKVGRSQKAMELLEEMERHGC--PPDV---MTYSSLITG 193

Query: 105 CLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPH 164
               G    + +  ++M+  G     + F  L+      GR      +L +MK   V P 
Sbjct: 194 LGKDGETVKAFKLFQEMKRRGRKPDSITFTALMDALGKAGRVDDALELLDEMKERGVKPG 253

Query: 165 VSTFHILMKIEANDHNIEGLMKVYS---DMKRSEVEPNEVSYCILATAHAVARLYTVAET 221
           V T++ L+   A    +  L++ Y+   +MKR+  +P+ V+Y  L T    A     A  
Sbjct: 254 VVTYNALI---AGFGKVGDLVEAYNLLDEMKRNGCKPDVVTYSCLITGLIKASQLDEACQ 310

Query: 222 YVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQEL---PNVRSKSYVLAIEA 278
            ++ +EK     +  T + LI   G      D  R++  ++     P+V +  Y   I A
Sbjct: 311 VLKKMEKEGCPPDTITYNTLINGLGKAGLLNDAGRLFDRMKSKGCNPDVVT--YSTLITA 368

Query: 279 FGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPN 338
            G+ A+V  A  L+ EM+SV        Y S+I+V  K G +D A  L  EM   G  P+
Sbjct: 369 LGKAARVESACVLFEEMESVGIQPDLFTYCSIITVLGKAGQVDDADRLFSEMRGKGLSPD 428

Query: 339 AITYRHL-----ALGCFK------SNLVEEG-------FKALELGMKLITTKKVRSSTPW 380
            ITY          G FK       ++ E G       + AL LG  L  TK+V  +   
Sbjct: 429 VITYNAFLNSLGRGGRFKEARKIFEDMKESGLLPDVATYDALLLG--LSKTKEVDDACGL 486

Query: 381 LETTL------------SIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVK 428
           L+  +              +EI    G+V  A  L +             YN LI A  K
Sbjct: 487 LKELIEQGCAFDSLKFDECLEILTSWGNVDEAHELLQFANSKGLWPGASSYNALIDALAK 546

Query: 429 A-KINDP-NLLRRMILGGARPDAETYSLL 455
           A ++++  N L  +   G +PD  +YS L
Sbjct: 547 AGRVSEAFNTLEDLKEQGGKPDIVSYSSL 575



 Score = 59.7 bits (143), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 58/315 (18%), Positives = 131/315 (41%), Gaps = 17/315 (5%)

Query: 59  RPKELDYSYLLEFTIKNHGISQGEKLFCCIPKDYQNE------LLYNNLVIACLDKGVIK 112
           +P  + YS L+   IK   + +     C + K  + E      + YN L+      G++ 
Sbjct: 286 KPDVVTYSCLITGLIKASQLDEA----CQVLKKMEKEGCPPDTITYNTLINGLGKAGLLN 341

Query: 113 LSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILM 172
            +     +M+  G +   + ++ LI       R ++   +  +M++  + P + T+  ++
Sbjct: 342 DAGRLFDRMKSKGCNPDVVTYSTLITALGKAARVESACVLFEEMESVGIQPDLFTYCSII 401

Query: 173 KIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTG 232
            +      ++   +++S+M+   + P+ ++Y     +      +  A    E +++S   
Sbjct: 402 TVLGKAGQVDDADRLFSEMRGKGLSPDVITYNAFLNSLGRGGRFKEARKIFEDMKESGLL 461

Query: 233 NNWSTLDVLIILYGYLAKGKDLERIWATVQEL----PNVRSKSYVLAIEAFGRIAQVSRA 288
            + +T D L++    L+K K+++     ++EL        S  +   +E       V  A
Sbjct: 462 PDVATYDALLL---GLSKTKEVDDACGLLKELIEQGCAFDSLKFDECLEILTSWGNVDEA 518

Query: 289 EELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALG 348
            EL     S         YN++I    K G + +A   L+++   G KP+ ++Y  L   
Sbjct: 519 HELLQFANSKGLWPGASSYNALIDALAKAGRVSEAFNTLEDLKEQGGKPDIVSYSSLISA 578

Query: 349 CFKSNLVEEGFKALE 363
             ++  ++  F+ LE
Sbjct: 579 LGQTGQIDTAFELLE 593



 Score = 50.1 bits (118), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 59/295 (20%), Positives = 120/295 (40%), Gaps = 15/295 (5%)

Query: 60  PKELDYSYLLEFTIKNHGISQGEKLF------CCIPKDYQNELLYNNLVIACLDKGVIKL 113
           P  + Y+ L+    K   ++   +LF       C P    + + Y+ L+ A      ++ 
Sbjct: 322 PDTITYNTLINGLGKAGLLNDAGRLFDRMKSKGCNP----DVVTYSTLITALGKAARVES 377

Query: 114 SLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMK 173
           +    ++M  +G       +  +I +    G+      +  +M+   ++P V T++  + 
Sbjct: 378 ACVLFEEMESVGIQPDLFTYCSIITVLGKAGQVDDADRLFSEMRGKGLSPDVITYNAFLN 437

Query: 174 IEANDHNIEGLMKVYSDMKRSEVEPNEVSY-CILATAHAVARLYTVAETYVEALEKSMTG 232
                   +   K++ DMK S + P+  +Y  +L        +        E +E+    
Sbjct: 438 SLGRGGRFKEARKIFEDMKESGLLPDVATYDALLLGLSKTKEVDDACGLLKELIEQGCAF 497

Query: 233 NNWSTLDVLIIL--YGYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEE 290
           ++    + L IL  +G + +  +L +   +    P   + SY   I+A  +  +VS A  
Sbjct: 498 DSLKFDECLEILTSWGNVDEAHELLQFANSKGLWPG--ASSYNALIDALAKAGRVSEAFN 555

Query: 291 LWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHL 345
              +++          Y+S+IS   + G ID A  LL+EMS  G K +  +Y +L
Sbjct: 556 TLEDLKEQGGKPDIVSYSSLISALGQTGQIDTAFELLEEMSKRGLKLSPRSYSNL 610


>gi|356540087|ref|XP_003538522.1| PREDICTED: pentatricopeptide repeat-containing protein At5g39980,
           chloroplastic-like [Glycine max]
          Length = 667

 Score = 98.6 bits (244), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 89/380 (23%), Positives = 179/380 (47%), Gaps = 26/380 (6%)

Query: 43  KRALEVMEWVIRERPYRPKELDYSYLLEFTIKN------HGISQGEKLFCCIPKDYQNEL 96
           +RAL +++W+  +  YRP    Y+ LL   ++       HG+    +     P  Y    
Sbjct: 125 QRALALLDWINDKALYRPSLFAYNVLLRNVLRAKQWHLAHGLFDEMRQKGLSPDRYT--- 181

Query: 97  LYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQM 156
            Y+ L+      G+   SL ++++M     S   ++++ LI L           +I  ++
Sbjct: 182 -YSTLITCFGKHGLFDSSLFWLQQMEQDNVSGDLVLYSNLIDLARKLSDYSKAISIFSRL 240

Query: 157 KADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLY 216
           KA  + P +  ++ ++ +            +  +M+ + V+P+ VSY  L   +   + +
Sbjct: 241 KASTITPDLIAYNSMINVFGKAKLFREARLLLQEMRDNAVQPDTVSYSTLLAIYVDNQKF 300

Query: 217 TVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQEL---PNVRSKSYV 273
             A +    + ++    + +T +++I +YG L   K+ +R++ +++++   PNV S + +
Sbjct: 301 VEALSLFSEMNEAKCPLDLTTCNIMIDVYGQLHMPKEADRLFWSMRKMGIQPNVISYNTL 360

Query: 274 LAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMN 333
           L +  +G       A  L+  MQS    +    YN++I++Y K    +KA+ L++EM+  
Sbjct: 361 LRV--YGEADLFGEAIHLFRLMQSKDVQQNVVTYNTMINIYGKTLEHEKATNLIQEMNKR 418

Query: 334 GCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTL--SIIEIF 391
           G +PNAITY         S ++    KA +L    I  +K+RSS   ++  L  ++I  +
Sbjct: 419 GIEPNAITY---------STIISIWEKAGKLDRAAILFQKLRSSGVRIDEVLYQTMIVAY 469

Query: 392 AEKGDVGNAENLFEELKKAN 411
              G V +A+ L  ELK+ +
Sbjct: 470 ERTGLVAHAKRLLHELKRPD 489



 Score = 48.5 bits (114), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 61/299 (20%), Positives = 119/299 (39%), Gaps = 64/299 (21%)

Query: 187 VYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYG 246
           ++ +M++  + P+  +Y  L T      L+  +  +++ +E+     +       ++LY 
Sbjct: 166 LFDEMRQKGLSPDRYTYSTLITCFGKHGLFDSSLFWLQQMEQDNVSGD-------LVLYS 218

Query: 247 YLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQ 306
            L    DL R           +   Y  AI  F R+   +   +L               
Sbjct: 219 NLI---DLAR-----------KLSDYSKAISIFSRLKASTITPDLI-------------A 251

Query: 307 YNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHL------------ALGCFKS-- 352
           YNS+I+V+ K     +A  LL+EM  N  +P+ ++Y  L            AL  F    
Sbjct: 252 YNSMINVFGKAKLFREARLLLQEMRDNAVQPDTVSYSTLLAIYVDNQKFVEALSLFSEMN 311

Query: 353 -----------NLVEEGFKALEL---GMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVG 398
                      N++ + +  L +     +L  + +     P + +  +++ ++ E    G
Sbjct: 312 EAKCPLDLTTCNIMIDVYGQLHMPKEADRLFWSMRKMGIQPNVISYNTLLRVYGEADLFG 371

Query: 399 NAENLFEELKKANYTKYTFVYNTLIKAYVKAKIND--PNLLRRMILGGARPDAETYSLL 455
            A +LF  ++  +  +    YNT+I  Y K   ++   NL++ M   G  P+A TYS +
Sbjct: 372 EAIHLFRLMQSKDVQQNVVTYNTMINIYGKTLEHEKATNLIQEMNKRGIEPNAITYSTI 430



 Score = 40.4 bits (93), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 38/137 (27%), Positives = 60/137 (43%), Gaps = 13/137 (9%)

Query: 323 ASGLLKEMSMNGCKPNAITYRHLALGCF-KSNLVEEG-FKALELGMKLITTKKVRSSTPW 380
           A GL  EM   G  P+  TY  L + CF K  L +   F   ++    ++   V  S   
Sbjct: 163 AHGLFDEMRQKGLSPDRYTYSTL-ITCFGKHGLFDSSLFWLQQMEQDNVSGDLVLYS--- 218

Query: 381 LETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKINDPN--LLR 438
                ++I++  +  D   A ++F  LK +  T     YN++I  + KAK+      LL+
Sbjct: 219 -----NLIDLARKLSDYSKAISIFSRLKASTITPDLIAYNSMINVFGKAKLFREARLLLQ 273

Query: 439 RMILGGARPDAETYSLL 455
            M     +PD  +YS L
Sbjct: 274 EMRDNAVQPDTVSYSTL 290



 Score = 39.7 bits (91), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 69/357 (19%), Positives = 138/357 (38%), Gaps = 55/357 (15%)

Query: 53  IRERPYRPKELDYSYLLEFTIKNHGISQGEKLFCCI-----PKDYQNELLYNNLVIACLD 107
           +R+   +P  + YS LL   + N    +   LF  +     P D    L   N++I    
Sbjct: 275 MRDNAVQPDTVSYSTLLAIYVDNQKFVEALSLFSEMNEAKCPLD----LTTCNIMIDVY- 329

Query: 108 KGVIKLSLEYMK---KMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPH 164
            G + +  E  +    MR +G   + + +N L+ +           ++ R M++  V  +
Sbjct: 330 -GQLHMPKEADRLFWSMRKMGIQPNVISYNTLLRVYGEADLFGEAIHLFRLMQSKDVQQN 388

Query: 165 VSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVE 224
           V T++ ++ I       E    +  +M +  +EPN ++Y  + +    A     A    +
Sbjct: 389 VVTYNTMINIYGKTLEHEKATNLIQEMNKRGIEPNAITYSTIISIWEKAGKLDRAAILFQ 448

Query: 225 ALEKSMTGNNWSTLDVLIILY---GYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGR 281
            L  S    +      +I+ Y   G +A  K   R+   ++   N+   + +  +   GR
Sbjct: 449 KLRSSGVRIDEVLYQTMIVAYERTGLVAHAK---RLLHELKRPDNIPRDTAIAILARAGR 505

Query: 282 IAQVSRAEELWLEMQSVKQLKA----------TEQYNSVISVYCK--------------- 316
           I + +       + + VK +             ++Y +V+ V+ K               
Sbjct: 506 IEEATWVFRQAFDAREVKDISVFGCMINLFSKNKKYANVVEVFEKMREVGYFPDSDVIAL 565

Query: 317 --NGF-----IDKASGLLKEMSMNGCK-PNAITYRHLALGCFKSN--LVEEGFKALE 363
             N F      DKA  L ++M   GC  P+ + ++ L+L   + +  +VE  F+ L+
Sbjct: 566 VLNAFGKLREFDKADALYRQMHEEGCVFPDEVHFQMLSLYGARKDFVMVESLFEKLD 622


>gi|356554749|ref|XP_003545705.1| PREDICTED: pentatricopeptide repeat-containing protein At5g09450,
           mitochondrial-like [Glycine max]
          Length = 399

 Score = 98.2 bits (243), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 67/262 (25%), Positives = 126/262 (48%), Gaps = 5/262 (1%)

Query: 3   RLPRGEPVGSAFQSWMREGFPVHRGEIFHSINRLRKLQLNKRALEVMEWVIRERPYRPKE 62
           RLP+     +  Q W+ +G P+   ++      LR+ Q  K ALE+ EW++    Y   +
Sbjct: 59  RLPK-RSATNVLQKWVLQGNPITLSQLRDISKELRRSQRYKHALEISEWMVSNEEYELSD 117

Query: 63  LDYSYLLEFTIKNHGISQGEKLFCCIPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMR 122
            DY+  ++   +  GI   E+ F  +P   +    Y  L+ +     + + + E  ++++
Sbjct: 118 SDYAVRIDLMTQVFGIDAAERYFEGLPLATKTTETYTALLHSYAGAKLTEKAEELYQRIK 177

Query: 123 VLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIE 182
               S   L +N ++ L  S G+ + +P ++ ++K  KV+P + T+++ +   A   NI+
Sbjct: 178 DSNLSFDALTYNEMMTLYMSVGQFEKVPIVVEELKQQKVSPDIFTYNLWISSCAAILNID 237

Query: 183 GLMKVYSDMKRSEVEPNE--VSYCILATAH-AVARLYTVAETYVEALEKSMTGNNWSTLD 239
            + ++  +M       NE  + Y  LA  + +VA L   +   +   EK +T   W T D
Sbjct: 238 EVRRILDEMSHG-AGSNESWIRYLNLANIYISVAHLDNASSNTLVETEKRITQRQWITYD 296

Query: 240 VLIILYGYLAKGKDLERIWATV 261
            LIILYG L     L++IW ++
Sbjct: 297 FLIILYGGLGSKDKLDQIWNSL 318


>gi|18415979|ref|NP_568214.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75165070|sp|Q94B59.1|PP372_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g09450, mitochondrial; Flags: Precursor
 gi|14596093|gb|AAK68774.1| putative protein [Arabidopsis thaliana]
 gi|27311913|gb|AAO00922.1| putative protein [Arabidopsis thaliana]
 gi|332004012|gb|AED91395.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 409

 Score = 98.2 bits (243), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 87/345 (25%), Positives = 166/345 (48%), Gaps = 20/345 (5%)

Query: 3   RLPRGEPVGSAFQSWMREGFPVHRGEIFHSINRLRKLQLNKRALEVMEWVIRERPYRPKE 62
           RLP+     +  + W+ EG  +   E+      LR+ +  K ALEV EW+++    +  +
Sbjct: 65  RLPK-RSATTVLEKWIGEGNQMTINELREISKELRRTRRYKHALEVTEWMVQHEESKISD 123

Query: 63  LDYSYLLEFTIKNHGISQGEKLFCCIPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMR 122
            DY+  ++   K  GI   E+ F  +  D +    Y +L+ A       + +    K++ 
Sbjct: 124 ADYASRIDLISKVFGIDAAERYFEGLDIDSKTAETYTSLLHAYAASKQTERAEALFKRI- 182

Query: 123 VLGHSISY--LVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHN 180
           +   S+++  + +N ++ L  S G+ + +P ++  +K  KV+P + T+++ +   A   N
Sbjct: 183 IESDSLTFGAITYNEMMTLYMSVGQVEKVPEVIEVLKQKKVSPDIFTYNLWLSSCAATFN 242

Query: 181 IEGLMKVYSDMKRSEVEPNE--VSYCILATAHAVARLYTVAETY--VEALEKSMTGNNWS 236
           I+ L K+  +M R +   NE  V Y  L + +  +   T AE+   VEA EKS++   W 
Sbjct: 243 IDELRKILEEM-RHDASSNEGWVRYIDLTSIYINSSRVTNAESTLPVEA-EKSISQREWI 300

Query: 237 TLDVLIILYGYLAKGKDLERIWATVQELPNV-RSKSYVLAIEAFGRIAQVSRAEELWLEM 295
           T D L+IL+  L     +++IW +++    +  S+SY+  + ++  +  +  AEE+   +
Sbjct: 301 TYDFLMILHTGLGNKVMIDQIWKSLRNTNQILSSRSYICVLSSYLMLGHLREAEEI---I 357

Query: 296 QSVKQLKATEQYNSVISVYCKNGFIDK-----ASGLLKEMSMNGC 335
              K+ K TE +++   +   N F D      ASG    +  N C
Sbjct: 358 HQWKESKTTE-FDASACLRILNAFRDVGLEGIASGFHLILVHNKC 401


>gi|297806979|ref|XP_002871373.1| hypothetical protein ARALYDRAFT_487758 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297317210|gb|EFH47632.1| hypothetical protein ARALYDRAFT_487758 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 410

 Score = 98.2 bits (243), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 87/345 (25%), Positives = 167/345 (48%), Gaps = 20/345 (5%)

Query: 3   RLPRGEPVGSAFQSWMREGFPVHRGEIFHSINRLRKLQLNKRALEVMEWVIRERPYRPKE 62
           RLP+     +  + W+ EG  +   E+      LR+ + +K ALEV EW+++    +  +
Sbjct: 66  RLPK-RSATTVLERWVGEGNQITINELREISKELRRTRRHKHALEVTEWMVQHEELKVSD 124

Query: 63  LDYSYLLEFTIKNHGISQGEKLFCCIPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMR 122
            DY+  ++   K  GI   E+ F  +  D +    Y +L+ A       + +    K++ 
Sbjct: 125 ADYASRIDLISKVFGIDAAERYFEGLHIDAKTTETYTSLLHAYAGSKQTERAEALFKRI- 183

Query: 123 VLGHSISY--LVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHN 180
           +   S+S+  + +N ++ L  S G+ + +P +++ +K  KV+P + T+++ +   A   N
Sbjct: 184 IETDSLSFGAITYNEMMTLYMSVGQVEKVPEVIQVLKHKKVSPDIFTYNLWLSSCAATFN 243

Query: 181 IEGLMKVYSDMKRSEVEPNE--VSYCILATAHAVARLYTVAETY--VEALEKSMTGNNWS 236
           I+ L ++  +M R +   NE  V Y  L + +  +   T AE+   VEA EKS++   W 
Sbjct: 244 IDELRRILEEM-RHDASSNEGWVRYINLTSIYINSSRVTNAESTSPVEA-EKSISQREWI 301

Query: 237 TLDVLIILYGYLAKGKDLERIWATVQEL-PNVRSKSYVLAIEAFGRIAQVSRAEELWLEM 295
           T D L+IL+  L     +++IW ++      + S+SY+  + ++  +  +  AEE+   +
Sbjct: 302 TYDFLMILHTGLGNKVMIDQIWKSLGNTNQKLSSRSYICVLSSYLMLGHLREAEEI---I 358

Query: 296 QSVKQLKATEQYNSVISVYCKNGFID-----KASGLLKEMSMNGC 335
              K+ K TE +++   +   N F D      ASG    +  N C
Sbjct: 359 HQWKESKTTE-FDASACLRILNAFRDVGLEGVASGFHLLLVYNKC 402


>gi|302801852|ref|XP_002982682.1| hypothetical protein SELMODRAFT_421991 [Selaginella moellendorffii]
 gi|300149781|gb|EFJ16435.1| hypothetical protein SELMODRAFT_421991 [Selaginella moellendorffii]
          Length = 414

 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 97/438 (22%), Positives = 193/438 (44%), Gaps = 58/438 (13%)

Query: 31  HSINRLRKLQLNKR---ALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQGEKLFCC 87
           H +N + KL++  +   A E+ +W+IR + +  +E D+  LLE   +     Q  + F  
Sbjct: 5   HLLNVIYKLRITAKFGQAREICDWMIRNKVFEIEESDHVLLLELVGRISKF-QATRCFWE 63

Query: 88  IPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRK 147
           +P + ++E  Y  ++        I  + + M +M+ L        +N ++ +        
Sbjct: 64  MPAELRSEAAYTAMLQVFARWHAIPAAEDTMSEMKSLNLITRVEPYNIMLDMYKRKNEDD 123

Query: 148 TIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGL---MKVYSDMKRSEVEPNEVSYC 204
            +  +  ++ +  VAP   T+ I+++ +      +G+   ++ + D + +  +P  +  C
Sbjct: 124 KVRAMYDELSSLGVAPDAHTYLIVLRAKQKIGGFDGIEAEVRKFLDEQLTSRQPLFIYEC 183

Query: 205 ILATAHAVARLYTVAE--TYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQ 262
           +L       R+YT+    T +E L   +                              ++
Sbjct: 184 ML-------RIYTLLRDLTAIENLRSIL------------------------------LK 206

Query: 263 ELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDK 322
                 S SY   ++A+ ++ +V RAE L+ E+ +   L   + Y ++I+VY  NG ++K
Sbjct: 207 TFKKFSSSSYNCLLDAYRQLGEVERAERLFNEIGNKFTLN-IQSYRAMIAVYASNGRMEK 265

Query: 323 ASGLLKEMSMNGCKPNAITYRHLALGCFK----SNLVEEGFKALELGMKLITTKKVRSST 378
           A+ L K++   G + +   Y  +  G       SN + +  KA +  +       +    
Sbjct: 266 ANELYKQLFRAGFECHPAIYHAMVAGYIDARDHSNALIQYGKAWDRSL-------LGHPK 318

Query: 379 PWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKINDPNLLR 438
           P   TTL ++ + AE+GD   AE++  +LK+        VYN L+KAY+KA++       
Sbjct: 319 PLRATTLLVLRVLAEQGDFSRAESIVRDLKRERQGSDVEVYNWLLKAYIKAEVPVFGFDG 378

Query: 439 RMILGGARPDAETYSLLK 456
           RM+  G RP+ E+  LL+
Sbjct: 379 RMLAAGVRPNDESLELLR 396


>gi|224121672|ref|XP_002330624.1| predicted protein [Populus trichocarpa]
 gi|222872228|gb|EEF09359.1| predicted protein [Populus trichocarpa]
          Length = 501

 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 80/342 (23%), Positives = 154/342 (45%), Gaps = 2/342 (0%)

Query: 9   PVGSAFQSWMREGFPVHRGEIFHSINRLRKLQLNKRALEVMEWVIRERPYRPKELDYSYL 68
           PV    + W++EG  V   ++ H I +LRK+     AL++ +W+  +R +     D +  
Sbjct: 48  PVIPVIEKWVQEGQVVTNSDLKHFIRKLRKIHRFSHALQISQWMSDQRGHNLSPGDVAVR 107

Query: 69  LEFTIKNHGISQGEKLFCCIPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSI 128
           L+   K HG+ Q    F  +P+  +   +Y  L+        ++ +   M+KMR +G   
Sbjct: 108 LDLISKVHGLEQAVTYFNSVPESLRGLEVYGALLNCYAHYKHLEEAEATMRKMREMGFVR 167

Query: 129 SYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVY 188
           + L +N ++ L    G+ + I  ++++M+   +     T+ IL+       NIE + K+ 
Sbjct: 168 NVLSYNVMLNLYYQMGKYEKIQVLMQEMEKWGICFSNITYKILLNAYVATSNIEEIKKIL 227

Query: 189 SDMKRSE-VEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWS-TLDVLIILYG 246
             M+    V  +  +Y + A  +  A L     T +   E+ ++G +     + L+ LY 
Sbjct: 228 MKMEADPLVSIDWYAYVVAANGYLKAGLIDKTLTMLWRSEQLISGKSARFACETLLSLYT 287

Query: 247 YLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQ 306
            +   + + R+W   +      + SY+  I +  ++  V  AE +W E  S+ +      
Sbjct: 288 AVGNKEQVYRVWNLYKTKGRSLNSSYLCMINSLLKLDDVDGAERIWEEWVSIVKFFDIRI 347

Query: 307 YNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALG 348
            N ++S Y K G  +KA   + ++  +G K  A T   LA G
Sbjct: 348 PNVMVSAYSKKGLWEKAEAFVGKIVASGIKIEASTLDRLATG 389


>gi|21592522|gb|AAM64472.1| unknown [Arabidopsis thaliana]
          Length = 409

 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 87/345 (25%), Positives = 166/345 (48%), Gaps = 20/345 (5%)

Query: 3   RLPRGEPVGSAFQSWMREGFPVHRGEIFHSINRLRKLQLNKRALEVMEWVIRERPYRPKE 62
           RLP+     +  + W+ EG  +   E+      LR+ +  K ALEV EW+++    +  +
Sbjct: 65  RLPK-RSATTVLEKWIGEGNQMTINELREISKELRRTRRYKHALEVTEWMVQHEESKISD 123

Query: 63  LDYSYLLEFTIKNHGISQGEKLFCCIPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMR 122
            DY+  ++   K  GI   E+ F  +  D +    Y +L+ A       + +    K++ 
Sbjct: 124 ADYASRIDLISKVFGIDAAERYFEGLHIDSKTAETYTSLLHAYAASKQTERAEALFKRI- 182

Query: 123 VLGHSISY--LVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHN 180
           +   S+++  + +N ++ L  S G+ + +P ++  +K  KV+P + T+++ +   A   N
Sbjct: 183 IESDSLTFGAITYNEMMTLYMSVGQVEKVPEVIEVLKQKKVSPDIFTYNLWLSSCAATFN 242

Query: 181 IEGLMKVYSDMKRSEVEPNE--VSYCILATAHAVARLYTVAETY--VEALEKSMTGNNWS 236
           I+ L K+  +M R +   NE  V Y  L + +  +   T AE+   VEA EKS++   W 
Sbjct: 243 IDELRKILEEM-RHDASSNEGWVRYIDLTSIYINSSRVTNAESTLPVEA-EKSISQREWI 300

Query: 237 TLDVLIILYGYLAKGKDLERIWATVQELPNV-RSKSYVLAIEAFGRIAQVSRAEELWLEM 295
           T D L+IL+  L     +++IW +++    +  S+SY+  + ++  +  +  AEE+   +
Sbjct: 301 TYDFLMILHTGLGNKVMIDQIWKSLRNTNQILSSRSYICVLSSYLMLGHLREAEEI---I 357

Query: 296 QSVKQLKATEQYNSVISVYCKNGFIDK-----ASGLLKEMSMNGC 335
              K+ K TE +++   +   N F D      ASG    +  N C
Sbjct: 358 HQWKESKTTE-FDASACLRILNAFRDVGLEGIASGFHLILVHNKC 401


>gi|115473169|ref|NP_001060183.1| Os07g0598500 [Oryza sativa Japonica Group]
 gi|34393591|dbj|BAC83218.1| putative DNA-binding protein [Oryza sativa Japonica Group]
 gi|113611719|dbj|BAF22097.1| Os07g0598500 [Oryza sativa Japonica Group]
 gi|215706491|dbj|BAG93347.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 506

 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 86/376 (22%), Positives = 171/376 (45%), Gaps = 13/376 (3%)

Query: 33  INRLRKLQLNKRALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQGEKLFCCIPKDY 92
           +  LRK + +++ALEV EW+  +   +    D++  L+   + HG S  E  F  +P   
Sbjct: 103 VKELRKRRRHRQALEVSEWMNAKGHVKFLPKDHAVHLDLIGEIHGSSAAETYFNNLPDKD 162

Query: 93  QNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNI 152
           + E  Y  L+     + +++ SL + +KM+ LG   S L +N ++ L ++ G+ + +P++
Sbjct: 163 KTEKPYGALLNCYTRELLVEKSLAHFQKMKELGFVFSTLPYNNIMGLYTNLGQHEKVPSV 222

Query: 153 LRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEV----SYCILAT 208
           + +MK++ + P   ++ I +       +  G+     +M   E EP  V    +Y ++A+
Sbjct: 223 IAEMKSNGIVPDNFSYRICINSYGTRADFFGMENTLEEM---ECEPKIVVDWNTYAVVAS 279

Query: 209 AHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVR 268
            +    +   A + ++  E  +   +  + + LI LYG+L    ++ R+WA      N  
Sbjct: 280 NYIKGNIREKAFSALKKAEAKINIKDSDSYNHLISLYGHLGDKSEVNRLWALQMSNCNRH 339

Query: 269 -SKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLL 327
            +K Y   +    ++ ++  AE L  E +S       +  N +++ Y +   +DKA  LL
Sbjct: 340 INKDYTTMLAVLVKLNEIEEAEVLLKEWESSGNAFDFQVPNVLLTGYRQKDLLDKAEALL 399

Query: 328 KEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSI 387
            +    G  P + ++  +A G  +     +  KA EL    +       +T W+     I
Sbjct: 400 DDFLKKGKMPPSTSWAIVAAGYAEKG---DAAKAYELTKNALCV--YAPNTGWIPRPGMI 454

Query: 388 IEIFAEKGDVGNAENL 403
             I    GD G+ E +
Sbjct: 455 EMILKYLGDEGDVEEV 470


>gi|356510143|ref|XP_003523799.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g27460-like [Glycine max]
          Length = 530

 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 104/457 (22%), Positives = 205/457 (44%), Gaps = 26/457 (5%)

Query: 13  AFQSWMREGFPVHRGEIFHSINRLRKLQLNKRALEVMEWVIRERPYRPKELDYSYLLEFT 72
           A ++W+ EG  V   E+      L K +    ALEV++W+  ++ +     DY+  LE  
Sbjct: 74  ALKNWVDEGNDVSHSELRRIARTLVKSKCYHHALEVVKWIENQKNFHMIPADYAMKLELI 133

Query: 73  IKNHGISQGEKLFCCIPKDYQNELLYNNLVIACLD--KGVIKL-----SLEYMKKMRVLG 125
           I+N+ + + E+ F  +P     +        ACL   +G I++     +  +M K+  LG
Sbjct: 134 IENYDLMEAEEYFMNLPDSAAKK-------AACLTLLRGYIRVRDTNKAETFMVKLYELG 186

Query: 126 HSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMK--IEANDHNIEG 183
             +S   FN ++ L  +    + +P +++QMK +KV  +V ++++ M    E   + +  
Sbjct: 187 LVLSPHPFNEMMKLYLATCEYRKVPLVMQQMKRNKVPCNVLSYNLWMNACTEEEGYGVAA 246

Query: 184 LMKVYSDMKRSE-VEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLI 242
           +  V+  M+    VE    S   LA A+  A     A   ++  E+ ++  N      LI
Sbjct: 247 VETVFRQMQNDRNVEVGWSSLATLANAYKKAGQSKKAILVLKDAERKLSTCNRLGYFFLI 306

Query: 243 ILYGYLAKGKDLERIWATVQELPN-VRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQL 301
            LY  L + + + R+W   + +   +   +Y+  +    ++  + +A+ ++LE +S  Q 
Sbjct: 307 TLYASLKEKEGVLRLWEASKAVGGRISCANYICILICLVKLGDIVQAKRIFLEWESNCQK 366

Query: 302 KATEQYNSVISVYCKNGFIDKASGL-LKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFK 360
                 N ++  Y +NG +++A  L L  +   GC PN  T   L  G      ++E   
Sbjct: 367 YDIRVSNVLLGAYARNGSMEEAESLHLHTLQKGGC-PNYKTLEILMEGYVNWQKMDEAII 425

Query: 361 ALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTF-VY 419
            ++  + ++     R   P     L+I E   + G++  A     +L+  N+  ++  +Y
Sbjct: 426 TMKRALAMMKDCHWR---PPHGLVLAIAEYLEKDGNLKYANKYITDLR--NFGLFSLSLY 480

Query: 420 NTLIKAYVKAKINDPNLLRRMILGGARPDAETYSLLK 456
             L++ ++ A     ++L+ M       D ET S+LK
Sbjct: 481 KILLRMHLSANKPPFHILKMMDEDKIEMDNETLSILK 517


>gi|125591164|gb|EAZ31514.1| hypothetical protein OsJ_15655 [Oryza sativa Japonica Group]
          Length = 531

 Score = 97.4 bits (241), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 91/386 (23%), Positives = 160/386 (41%), Gaps = 7/386 (1%)

Query: 45  ALEVMEWVIRERP-YRPKELDYSYLLEFTIKNHGISQGEKLFCCIPKDYQNELLYNNLVI 103
           A +V +W+   R  +     D +  L+   K  G+S  E+ F  +P   +++  Y +L+ 
Sbjct: 146 AKDVYDWMTERRDRFSLSSSDMAIQLDLIAKVRGVSHAEEYFEELPDPLKDKRTYGSLLN 205

Query: 104 ACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAP 163
                 + + +    ++MR  G +   L FN L+         + +  ++ +M    VA 
Sbjct: 206 VYAQAMMKEKTESTFEQMRKKGFATDTLPFNVLMNFYVDAEEAEKVSILIDEMMERNVAF 265

Query: 164 HVSTFHILMKIEANDHNIEGLMKVYSDMKRSE-VEPNEVSYCILATAHAVARLYTVAETY 222
            V T++I +K  A   + + + +V++ M R E V  N  +Y  LA+ H        AE  
Sbjct: 266 DVCTYNIWIKSCAAMQDADAMEQVFNQMIRDETVVANWTTYTTLASMHIKLGNSEKAEES 325

Query: 223 VEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQE-LPNVRSKSYVLAIEAFGR 281
           ++  EK  TG        L+ LY +L K +++ R+W   +   P + +  Y   + A  R
Sbjct: 326 LKEAEKRTTGREKKCFHYLMTLYSHLGKKEEVYRVWNWYKATFPTIHNLGYQEVLSALVR 385

Query: 282 IAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAIT 341
           +  +  AE L+ E  S       +  N +++ Y + GF+ KA   L      G  P   T
Sbjct: 386 LGDIEGAELLYEEWASKSSSFDPKTMNILLAWYAREGFVTKAEQTLNRFVEKGGNPKPNT 445

Query: 342 YRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAE 401
           +  L     K     E    LE    + +  K R   P      S++  F EK D  +A+
Sbjct: 446 WEILGTAYLKDGQSSEALSCLEKATAVASPSKWR---PRPTNVESLLANFKEKNDAESAD 502

Query: 402 NLFEELKKANYTKYTFVYNTLIKAYV 427
            L   L ++   +    Y +LI  Y 
Sbjct: 503 RLMNVL-RSRRCEENEEYKSLINTYA 527


>gi|168004269|ref|XP_001754834.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162693938|gb|EDQ80288.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 504

 Score = 97.4 bits (241), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 97/441 (21%), Positives = 196/441 (44%), Gaps = 29/441 (6%)

Query: 29  IFHSINRLRKLQLNKRALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQGEKLFCCI 88
           I  ++  LR+L+  +  + ++EW+++   ++P    ++ L++   K+    + EK F  +
Sbjct: 50  IMENVAELRRLRNWRSVILILEWILQGTMFKPDVGCFNMLIDAYGKSKQWREAEKTFHLM 109

Query: 89  PKDYQ---NELLYNNLVIACLDKGVI-----KLSLEYMKKMRVLGHSISYLVFNRLIILN 140
            KD+Q    E  + N+++A   +GV      KL  E MK+      ++ +++F+ +   N
Sbjct: 110 -KDFQCLPTETSF-NVLLAAYSRGVQLEKAEKLFHE-MKESNYSPGTVEWMIFSGIATYN 166

Query: 141 S------SPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRS 194
           +        GR     +  R M+   + P V+TF I++ I    +  +    ++  M+++
Sbjct: 167 TYLEVLGKSGRLSQAEDTFRDMQKQGILPAVNTFTIMINIYGKAYYSDKADDLFRSMRKA 226

Query: 195 EVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDL 254
              PN  +Y  L  AHA       AE     L+      +  T + L+  Y         
Sbjct: 227 LCPPNLYTYTALMNAHAREGNCVRAEEIFAELQSVGFIPDVYTYNALLEAYSRGEHPTGA 286

Query: 255 ERIWATVQELPNVRSK--SYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVIS 312
           + ++  + E   VR    SY + I+AFGR    + A+ ++  M+        + +  ++S
Sbjct: 287 KEVFQAMVE-AGVRPDQVSYNILIDAFGRAGLTADAQAVYDSMKEAGFKPTMKSHMLLLS 345

Query: 313 VYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTK 372
            Y K G + +A  L++E+  +G KP+   +  L      S  ++E    LE  +  +   
Sbjct: 346 SYAKAGKVTEAERLVREIENSGVKPDTFMFNSLLSAYGNSGRIDEMESLLESMVSSV--- 402

Query: 373 KVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKI- 431
               + P + T  ++I  +A+ G +  AE +F  L+    T     + +L+ AY + K+ 
Sbjct: 403 ----AKPDISTLNTLINAYAQGGYIEKAEEVFNSLESKGLTPDVMSWTSLMGAYAQRKLF 458

Query: 432 -NDPNLLRRMILGGARPDAET 451
               ++ ++M+  G  PD  T
Sbjct: 459 RKCVSIFQKMVKAGCIPDRAT 479



 Score = 84.0 bits (206), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 82/338 (24%), Positives = 152/338 (44%), Gaps = 25/338 (7%)

Query: 133 FNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMK 192
           FN LI       + +        MK  +  P  ++F++L+   +    +E   K++ +MK
Sbjct: 86  FNMLIDAYGKSKQWREAEKTFHLMKDFQCLPTETSFNVLLAAYSRGVQLEKAEKLFHEMK 145

Query: 193 RSEVEPNEVSYCI---LATAHAV-------ARLYTVAETYVEALEKSMTGNNWSTLDVLI 242
            S   P  V + I   +AT +          RL    +T+ + ++K       +T  ++I
Sbjct: 146 ESNYSPGTVEWMIFSGIATYNTYLEVLGKSGRLSQAEDTFRD-MQKQGILPAVNTFTIMI 204

Query: 243 ILYG---YLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVK 299
            +YG   Y  K  DL R        PN+ +  Y   + A  R     RAEE++ E+QSV 
Sbjct: 205 NIYGKAYYSDKADDLFRSMRKALCPPNLYT--YTALMNAHAREGNCVRAEEIFAELQSVG 262

Query: 300 QLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGF 359
            +     YN+++  Y +      A  + + M   G +P+ ++Y  L     ++ L  +  
Sbjct: 263 FIPDVYTYNALLEAYSRGEHPTGAKEVFQAMVEAGVRPDQVSYNILIDAFGRAGLTADA- 321

Query: 360 KALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVY 419
           +A+   MK    K      P +++ + ++  +A+ G V  AE L  E++ +     TF++
Sbjct: 322 QAVYDSMKEAGFK------PTMKSHMLLLSSYAKAGKVTEAERLVREIENSGVKPDTFMF 375

Query: 420 NTLIKAYVKA-KIND-PNLLRRMILGGARPDAETYSLL 455
           N+L+ AY  + +I++  +LL  M+   A+PD  T + L
Sbjct: 376 NSLLSAYGNSGRIDEMESLLESMVSSVAKPDISTLNTL 413



 Score = 65.9 bits (159), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 63/295 (21%), Positives = 110/295 (37%), Gaps = 69/295 (23%)

Query: 163 PHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETY 222
           P V  F++L+             K +  MK  +  P E S+ +L  A++      V    
Sbjct: 81  PDVGCFNMLIDAYGKSKQWREAEKTFHLMKDFQCLPTETSFNVLLAAYSRG----VQLEK 136

Query: 223 VEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRI 282
            E L   M  +N+S   V  +++  +A                     +Y   +E  G+ 
Sbjct: 137 AEKLFHEMKESNYSPGTVEWMIFSGIA---------------------TYNTYLEVLGKS 175

Query: 283 AQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITY 342
            ++S+AE+ + +MQ    L A   +  +I++Y K  + DKA  L + M    C PN  TY
Sbjct: 176 GRLSQAEDTFRDMQKQGILPAVNTFTIMINIYGKAYYSDKADDLFRSMRKALCPPNLYTY 235

Query: 343 RHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAEN 402
             L                                          +   A +G+   AE 
Sbjct: 236 TAL------------------------------------------MNAHAREGNCVRAEE 253

Query: 403 LFEELKKANYTKYTFVYNTLIKAYVKAK--INDPNLLRRMILGGARPDAETYSLL 455
           +F EL+   +    + YN L++AY + +       + + M+  G RPD  +Y++L
Sbjct: 254 IFAELQSVGFIPDVYTYNALLEAYSRGEHPTGAKEVFQAMVEAGVRPDQVSYNIL 308


>gi|356569143|ref|XP_003552765.1| PREDICTED: pentatricopeptide repeat-containing protein At5g39980,
           chloroplastic-like [Glycine max]
          Length = 658

 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 93/386 (24%), Positives = 180/386 (46%), Gaps = 38/386 (9%)

Query: 43  KRALEVMEWVIRERPYRPKELDYSYLLEFTIKN------HGISQGEKLFCCIPKDYQNEL 96
           +RAL +++W+  +  Y P    Y+ LL   ++       HG+    +     P  Y    
Sbjct: 116 QRALALLDWINDKALYSPSLFAYNVLLRNVLRAKQWHLAHGLFDEMRQKGLSPDRYT--- 172

Query: 97  LYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQM 156
            Y+ L+ +    G+   SL ++++M     S   ++++ LI L           +I  ++
Sbjct: 173 -YSTLITSFGKHGLFDSSLFWLQQMEQDNVSGDLVLYSNLIDLARKLSDYSKAISIFSRL 231

Query: 157 KADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLY 216
           KA  ++P +  ++ ++ +            +  +M+ + V+P+ VSY  L        +Y
Sbjct: 232 KASTISPDLIAYNSMINVFGKAKLFREARLLLQEMRDNAVQPDTVSYSTLLA------IY 285

Query: 217 TVAETYVEALEKSMTGN------NWSTLDVLIILYGYLAKGKDLERIWATVQEL---PNV 267
              + +VEAL      N      + +T +++I +YG L   K+ +R++ +++++   PNV
Sbjct: 286 VDNQKFVEALSLFFEMNEAKCPLDLTTCNIMIDVYGQLHMPKEADRLFWSMRKMGIQPNV 345

Query: 268 RSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLL 327
            S + +L +  +G       A  L+  MQS    +    YN++I++Y K    +KA+ L+
Sbjct: 346 VSYNTLLRV--YGEADLFGEAIHLFRLMQSKDVQQNVVTYNTMINIYGKTLEHEKATNLI 403

Query: 328 KEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTL-- 385
           +EM   G +PNAITY         S ++    KA +L    I  +K+RSS   ++  L  
Sbjct: 404 QEMKKRGIEPNAITY---------STIISIWEKAGKLDRAAILFQKLRSSGVRIDEVLYQ 454

Query: 386 SIIEIFAEKGDVGNAENLFEELKKAN 411
           ++I  +   G V +A+ L  ELK+ +
Sbjct: 455 TMIVAYERAGLVAHAKRLLHELKRPD 480



 Score = 49.3 bits (116), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 55/246 (22%), Positives = 106/246 (43%), Gaps = 43/246 (17%)

Query: 187 VYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYG 246
           ++ +M++  + P+  +Y  L T+     L+  +  +++ +E+     +       ++LY 
Sbjct: 157 LFDEMRQKGLSPDRYTYSTLITSFGKHGLFDSSLFWLQQMEQDNVSGD-------LVLYS 209

Query: 247 YLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQ 306
            L    DL R           +   Y  AI  F R+   + + +L               
Sbjct: 210 NLI---DLAR-----------KLSDYSKAISIFSRLKASTISPDLI-------------A 242

Query: 307 YNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGM 366
           YNS+I+V+ K     +A  LL+EM  N  +P+ ++Y  L L  +  N  ++  +AL L  
Sbjct: 243 YNSMINVFGKAKLFREARLLLQEMRDNAVQPDTVSYSTL-LAIYVDN--QKFVEALSLFF 299

Query: 367 KLITTKKVRSSTPWLETTLSI-IEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKA 425
           ++   K      P   TT +I I+++ +      A+ LF  ++K         YNTL++ 
Sbjct: 300 EMNEAK-----CPLDLTTCNIMIDVYGQLHMPKEADRLFWSMRKMGIQPNVVSYNTLLRV 354

Query: 426 YVKAKI 431
           Y +A +
Sbjct: 355 YGEADL 360



 Score = 40.8 bits (94), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 70/357 (19%), Positives = 138/357 (38%), Gaps = 55/357 (15%)

Query: 53  IRERPYRPKELDYSYLLEFTIKNHGISQGEKLF-----CCIPKDYQNELLYNNLVIACLD 107
           +R+   +P  + YS LL   + N    +   LF        P D    L   N++I    
Sbjct: 266 MRDNAVQPDTVSYSTLLAIYVDNQKFVEALSLFFEMNEAKCPLD----LTTCNIMIDVY- 320

Query: 108 KGVIKLSLEYMK---KMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPH 164
            G + +  E  +    MR +G   + + +N L+ +           ++ R M++  V  +
Sbjct: 321 -GQLHMPKEADRLFWSMRKMGIQPNVVSYNTLLRVYGEADLFGEAIHLFRLMQSKDVQQN 379

Query: 165 VSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVE 224
           V T++ ++ I       E    +  +MK+  +EPN ++Y  + +    A     A    +
Sbjct: 380 VVTYNTMINIYGKTLEHEKATNLIQEMKKRGIEPNAITYSTIISIWEKAGKLDRAAILFQ 439

Query: 225 ALEKSMTGNNWSTLDVLIILY---GYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGR 281
            L  S    +      +I+ Y   G +A  K   R+   ++   N+   + +  +   GR
Sbjct: 440 KLRSSGVRIDEVLYQTMIVAYERAGLVAHAK---RLLHELKRPDNIPRDTAIGILARAGR 496

Query: 282 IAQVSRAEELWLEMQSVKQLKA----------TEQYNSVISVYCK--------------- 316
           I + +       + + VK +             ++Y +V+ V+ K               
Sbjct: 497 IEEATWVFRQAFDAREVKDISVFGCMINLFSKNKKYGNVVEVFEKMRVVGYFPDSDVIAL 556

Query: 317 --NGF-----IDKASGLLKEMSMNGCK-PNAITYRHLALGCFKSN--LVEEGFKALE 363
             N F      DKA  L ++M   GC  P+ + ++ L+L   + +  +VE  F+ L+
Sbjct: 557 VLNAFGKLREFDKADALYRQMHEEGCVFPDEVHFQMLSLYGARKDFVMVESLFEKLD 613



 Score = 39.3 bits (90), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 35/136 (25%), Positives = 57/136 (41%), Gaps = 11/136 (8%)

Query: 323 ASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEG-FKALELGMKLITTKKVRSSTPWL 381
           A GL  EM   G  P+  TY  L     K  L +   F   ++    ++   V  S    
Sbjct: 154 AHGLFDEMRQKGLSPDRYTYSTLITSFGKHGLFDSSLFWLQQMEQDNVSGDLVLYS---- 209

Query: 382 ETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKINDPN--LLRR 439
               ++I++  +  D   A ++F  LK +  +     YN++I  + KAK+      LL+ 
Sbjct: 210 ----NLIDLARKLSDYSKAISIFSRLKASTISPDLIAYNSMINVFGKAKLFREARLLLQE 265

Query: 440 MILGGARPDAETYSLL 455
           M     +PD  +YS L
Sbjct: 266 MRDNAVQPDTVSYSTL 281


>gi|302798905|ref|XP_002981212.1| hypothetical protein SELMODRAFT_420695 [Selaginella moellendorffii]
 gi|300151266|gb|EFJ17913.1| hypothetical protein SELMODRAFT_420695 [Selaginella moellendorffii]
          Length = 414

 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 97/436 (22%), Positives = 194/436 (44%), Gaps = 54/436 (12%)

Query: 31  HSINRLRKLQLNKR---ALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQGEKLFCC 87
           H +N + KL++  +   A E+ +W+IR + +  +E D+  LLE   +     Q  + F  
Sbjct: 5   HLLNVIYKLRITAKFGQAREICDWMIRNKVFEIEESDHVLLLELVGRISKF-QATRCFWE 63

Query: 88  IPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRK 147
           +P + ++E  Y  ++        I  + + M +M+ L        +N ++ +        
Sbjct: 64  MPAELRSEDAYTAMLQVFARWHAIPAAEDTMSEMKSLNLITRVEPYNIMLDMYKRKNEDD 123

Query: 148 TIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGL---MKVYSDMKRSEVEPNEVSYC 204
            +  +  ++ +  VAP   T+ I+++ +      +G+   ++ + D + +  +P  +  C
Sbjct: 124 KVRAMYDELSSLGVAPDAHTYLIVLRAKQKIGGFDGIEAEVRKFLDEQLTSRQPLFIYEC 183

Query: 205 ILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQEL 264
           +L       R+YT+                             LA  ++L  I   ++  
Sbjct: 184 ML-------RIYTLLRD--------------------------LAAIENLRSI--LLKTF 208

Query: 265 PNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKAS 324
               S SY   ++++ ++ +V RAE L+ E+ +   L   + Y ++I+VY  NG ++KA+
Sbjct: 209 KKFSSSSYNCLLDSYRQLGEVERAERLFNEIGNKFTLN-IQSYRAMIAVYASNGRMEKAN 267

Query: 325 GLLKEMSMNGCKPNAITYRHLALGCFK----SNLVEEGFKALELGMKLITTKKVRSSTPW 380
            L K++   G + +   Y  +  G       SN + +  KA +  +       +    P 
Sbjct: 268 ELYKQLFRAGFECHPAIYHAMVAGYIDARDHSNALIQYGKAWDRSL-------LGHPKPL 320

Query: 381 LETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKINDPNLLRRM 440
             TTL ++ + AE+GD   AE++  +LK+        VYN L+KAY+KA++       RM
Sbjct: 321 RATTLLVLRVLAEQGDFSRAESIVRDLKRERQGSDVEVYNWLLKAYIKAEVPVFGFDGRM 380

Query: 441 ILGGARPDAETYSLLK 456
           +  G RP+ E+  LL+
Sbjct: 381 LAAGVRPNDESLELLR 396


>gi|242034057|ref|XP_002464423.1| hypothetical protein SORBIDRAFT_01g017970 [Sorghum bicolor]
 gi|241918277|gb|EER91421.1| hypothetical protein SORBIDRAFT_01g017970 [Sorghum bicolor]
          Length = 496

 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 90/394 (22%), Positives = 178/394 (45%), Gaps = 22/394 (5%)

Query: 28  EIFHSINRLRKLQLNKRALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQGEKLFCC 87
           E+   +  LRK   +++ALEV EW+  +   +    D++  L+   + HG+   E  F  
Sbjct: 79  ELQRIVRELRKRHRHRQALEVSEWMNLKGHVKFLPKDHAIHLDLIGQVHGVGAAETYFNN 138

Query: 88  IPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRK 147
           +    + E  Y  L+     + ++  +L + + M+ LG   S L +N L+ L ++ G+ +
Sbjct: 139 LSDKDKTEKPYGALLNCYTRELLVDKALAHFQNMKELGFVFSALSYNNLMGLYTNIGQHE 198

Query: 148 TIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEV----SY 203
            +P ++ +MK D + P   ++ I +       +  GL     +M   E EP  V    +Y
Sbjct: 199 RVPMVMAEMKRDGIVPDNFSYRICINSYGIRADFFGLENTLEEM---ECEPQIVVDWNTY 255

Query: 204 CILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQE 263
            ++A+ +    L   A + +   E  M   +      LI LYG+L    +++R+WA    
Sbjct: 256 AVVASNYIKGYLREKAYSALRKAEAKMDKKDGDAYGHLISLYGHLGDKLEVKRLWAL--H 313

Query: 264 LPNVR---SKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFI 320
           + N +   +K Y   +    ++ +++ AE+L  E +S K     +  N +++ Y + G +
Sbjct: 314 MLNCKRYINKDYTNMLAVLVKLDEITEAEDLLKEWESSKNAFDFQVPNVLLTGYRQKGLL 373

Query: 321 DKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPW 380
           DKA  LL      G  P + ++  +A+G  +   V + ++  +  + +        ++ W
Sbjct: 374 DKAETLLDGFLKKGKTPTSTSWWIVAIGYAEKGDVAKAYELTKNALSVFA-----PNSGW 428

Query: 381 LETTLSIIEI----FAEKGDVGNAENLFEELKKA 410
           +    SIIE+       +G+V + E     LK A
Sbjct: 429 IPRP-SIIEMILKYLGNEGEVKDVEAFVNLLKVA 461


>gi|226502666|ref|NP_001140872.1| uncharacterized protein LOC100272948 [Zea mays]
 gi|194701536|gb|ACF84852.1| unknown [Zea mays]
 gi|413924212|gb|AFW64144.1| hypothetical protein ZEAMMB73_253479 [Zea mays]
          Length = 525

 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 89/434 (20%), Positives = 195/434 (44%), Gaps = 9/434 (2%)

Query: 9   PVGSA---FQSWMREGFPVHRGEIFHSINRLRKLQLNKRALEVMEWVIRERPYRPKELDY 65
           P G+A    + W ++   V + E+  +I  LR+ +  ++ALE+  W+      R    D+
Sbjct: 66  PAGTAAAAVERWAQDRVHVSQPELRRAIGMLRRERRYEQALEIFSWMESCSSLRLSSWDH 125

Query: 66  SYLLEFTIKNHGISQGEKLFCCIPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLG 125
           +  L+   K +  SQ E+ +  +      +     L+   + +  ++ +  +M +++  G
Sbjct: 126 AARLDLIAKAYSTSQAEEYYNKLQSPATRQAASFPLLHCYVMERDVQKAETFMAQLQSHG 185

Query: 126 HSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLM 185
             +    FN ++ L  +  + + + +++  MK + +  +V ++++ M   A    ++ + 
Sbjct: 186 LPVDPHSFNEIMKLYVATCQYEKVLSVIDLMKRNNIHRNVLSYNLWMNACAEVSGVDSVQ 245

Query: 186 KVYSDMKRSE-VEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIIL 244
            V+  M   E V+    +YC LA       L   A+  +   E  ++         ++  
Sbjct: 246 SVFQVMLNDETVKVGWSTYCTLANIFRKNGLNNEAQACLVKAEAKLSPAGRLGYSFVMTC 305

Query: 245 YGYLAKGKDLERIWATVQELPN-VRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKA 303
           Y  L     + R+W   + +P  + +  Y+ A+    ++  +S+AE ++ + ++  +   
Sbjct: 306 YAALNDSDGVMRMWEASKSVPGRIPTAYYMAAMSCSIKVGDISQAECIFGKWEAGCRKHD 365

Query: 304 TEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALE 363
               N ++  Y +N +I+KA  L   M   G  PN  T+  L  G  +S  +++    ++
Sbjct: 366 VRVSNVLLGAYVRNRWIEKAERLHLHMLEKGACPNYKTWEILMEGYVQSRQMDKAVGCMK 425

Query: 364 LGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLI 423
            G+ L+ +   R   P +E   +I + F E+G   +A    + L++ N T     Y +LI
Sbjct: 426 KGLSLLKSCHWR---PPVELMEAIGKHFEEQGSADDAYRYIKVLQRFNLTSLPL-YKSLI 481

Query: 424 KAYVKAKINDPNLL 437
           +AY+ A +  PN+L
Sbjct: 482 RAYINADVVPPNVL 495


>gi|449458295|ref|XP_004146883.1| PREDICTED: pentatricopeptide repeat-containing protein At1g02370,
           mitochondrial-like [Cucumis sativus]
 gi|449518825|ref|XP_004166436.1| PREDICTED: pentatricopeptide repeat-containing protein At1g02370,
           mitochondrial-like [Cucumis sativus]
          Length = 474

 Score = 96.7 bits (239), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 100/438 (22%), Positives = 192/438 (43%), Gaps = 10/438 (2%)

Query: 7   GEPVGSAFQSWMREGFPVHRGEIFHSINRLRKLQLNKRALEVMEWVIRERPYRPKELDYS 66
           G  V      ++ EG  V + E+   I  LRK +     L++MEW +  R       DY+
Sbjct: 22  GGSVAKTINQFIMEGNIVKKYELEKCIKELRKYRRYHHCLQIMEW-METRKINYSFTDYA 80

Query: 67  YLLEFTIKNHGISQGEKLFCCIPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGH 126
             L+   K +G++  EK F  +P   +N   Y  L+     + + + +L   KKM  L  
Sbjct: 81  LRLDLISKVNGVTAAEKYFYDLPPSAKNRCTYGALLNCYCKEMMEEKALTLFKKMDELKI 140

Query: 127 SISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMK 186
           S S L FN L+ +       + +P ++ +MK         T+++ M   A+ ++I  + +
Sbjct: 141 STS-LSFNNLMTMYMRMDHPEKVPPLIGEMKQRGFYLTTFTYNVWMNSCASLNDIGKVEE 199

Query: 187 VYSDMKRSEVEPNE-VSYCILATAHAVARLYTVAETYVEALEKSMTG--NNWSTLDVLII 243
           +  +MK  +    +  +Y  LA+ +  A  +  AE  ++ LE+ M    N+      LI 
Sbjct: 200 ILEEMKMEDRNKFDWTTYSNLASFYVKAGQFEKAELALKKLEEEMKSDKNDRLVYHCLIS 259

Query: 244 LYGYLAKGKDLERIWATVQELPNVRSK-SYVLAIEAFGRIAQVSRAEELWLEMQSVKQLK 302
           LY   +   ++ RIW  ++ + +  +  SY++ ++A  ++  +   +  + E +S  +  
Sbjct: 260 LYASTSNLSEVNRIWNALKSVYSTMTNISYLVMLQALRKLKDIEGLKRTYKEWESNCRNF 319

Query: 303 ATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKAL 362
                N +I  Y +    + A+ + ++ +     P +       +   K   V+  F  L
Sbjct: 320 DLRIVNDIIGAYLQQDMYEDAAMIFEDATKRSKGPFSRAREMFMVYFLKLKQVDSAFSHL 379

Query: 363 ELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTL 422
           E     ++  K +   P L TT + +  F E+ DV  AE+    LK+      +  Y+ L
Sbjct: 380 ESA---LSESKEKEWHPSLATTTAFLNYFEEEKDVEGAEDFARILKRLKCLDAS-GYHLL 435

Query: 423 IKAYVKAKINDPNLLRRM 440
           +K YV A    P++ +R+
Sbjct: 436 LKTYVAAGKLAPDMRKRL 453


>gi|359495888|ref|XP_003635109.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g24830-like [Vitis vinifera]
          Length = 580

 Score = 96.3 bits (238), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 90/358 (25%), Positives = 162/358 (45%), Gaps = 16/358 (4%)

Query: 105 CLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPH 164
           CL+ G ++ +L    KM   G     L  N L+      G  +   N++R+M     +P+
Sbjct: 142 CLE-GKLRAALWLRNKMIQKGVIPDVLTHNYLVNGLCKAGDLEKADNLVREMLEIGPSPN 200

Query: 165 VSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVE 224
            +TF+  +K    ++N++  + ++S M  S + PN+V+Y IL  A     L   A   +E
Sbjct: 201 CATFNTFIKGYCLNNNVDKALYLFSTMANSGIGPNKVTYNILIHALCKKGLLKDARKLLE 260

Query: 225 ALEKSMTGNNWST-LDVLIILYGYLAKGKDLERI--W-ATVQELPNVRSKSYVLAIEAFG 280
            +     G   S  +   I + G L KG  ++ +  W   +Q    +   +Y + I  F 
Sbjct: 261 KILDDDCGKETSDIITSTIFMDGCLKKGDMVQALVHWDEMLQRGTQIDVVAYNVLIHGFC 320

Query: 281 RIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAI 340
            I  ++ A   + EM     L     YN++IS +CK G +D+A  +   MS  G  P+ I
Sbjct: 321 LIQDMNSAYRYFCEMFKRGLLPDIFTYNTLISGFCKIGNLDEACYIHGVMSKMGAAPDLI 380

Query: 341 TYRHLALG-CFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGN 399
           +Y+ +  G C   +++    +A +  + ++    V     W      +I+     GD+ N
Sbjct: 381 SYKMIIQGLCIHGDVI----RANQFLVCMLENLMVPEPLIW----NVVIDGHGRHGDLSN 432

Query: 400 AENLFEELKKANYTKYTFVYNTLIKAYVKAK--INDPNLLRRMILGGARPDAETYSLL 455
           A ++ +++         F YN LI A +K    ++  ++ + M+L G  PD  TY+LL
Sbjct: 433 ALSIRDQMVSFGIPPNVFTYNALIHAQIKGGNIVDAHSIKKEMLLNGIYPDVVTYNLL 490


>gi|357146877|ref|XP_003574143.1| PREDICTED: pentatricopeptide repeat-containing protein At4g21705,
           mitochondrial-like [Brachypodium distachyon]
          Length = 511

 Score = 95.9 bits (237), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 77/340 (22%), Positives = 160/340 (47%), Gaps = 12/340 (3%)

Query: 28  EIFHSINRLRKLQLNKRALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQGEKLFCC 87
           E+   +  LRK + +++ALEV EW+  +   +    D++  L+   + HG+   E  F  
Sbjct: 92  ELERIVKELRKRRRHRQALEVSEWMSAKGLVKFLPKDHAVHLDLIGQVHGVGAAEAYFNK 151

Query: 88  IPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRK 147
           +    + E  Y  L+     + ++  SL + +KM+ LG   S L +N L+ L ++ G+ +
Sbjct: 152 LADKDKTEKPYGALLNCYTRELLVDKSLAHFQKMKELGFVFSSLPYNNLMGLYTNLGQHE 211

Query: 148 TIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEV----SY 203
            +P+++ +MK++ + P   ++ I +       +  G+     +M   E EP  V    +Y
Sbjct: 212 KVPSVIAEMKSNGIVPDNFSYRICINSYGARADFFGMENTLEEM---ECEPQIVVDWNTY 268

Query: 204 CILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQE 263
            +LA  +    L   A + ++  E  +   +  T + L+ LYG L    +++R+WA   +
Sbjct: 269 AVLANNYIKGNLRDKAISALQKAEAKIDIKDSDTYNHLMSLYGQLGDKSEVKRLWAL--Q 326

Query: 264 LPNVR---SKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFI 320
           + N +   +K Y   +    ++ ++  AE L  E +S +        N +++ Y +   +
Sbjct: 327 MSNCKRHINKDYTTMLAMLLKLDEIEEAEALLKEWESSENAFDFHVPNVLLTGYRQKDLL 386

Query: 321 DKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFK 360
           DKA  LL +    G  P + ++  +A+G  +   V + ++
Sbjct: 387 DKAEALLDDFLKKGKMPTSTSWAIVAIGYAEKGDVAKAYE 426


>gi|15221411|ref|NP_177623.1| plastid transcriptionally active 2 [Arabidopsis thaliana]
 gi|75194055|sp|Q9S7Q2.1|PP124_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g74850, chloroplastic; AltName: Full=Protein PLASTID
           TRANSCRIPTIONALLY ACTIVE 2; Flags: Precursor
 gi|5882738|gb|AAD55291.1|AC008263_22 Contains 3 PF|01535 DUF17 domains [Arabidopsis thaliana]
 gi|12323908|gb|AAG51934.1|AC013258_28 hypothetical protein; 81052-84129 [Arabidopsis thaliana]
 gi|332197518|gb|AEE35639.1| plastid transcriptionally active 2 [Arabidopsis thaliana]
          Length = 862

 Score = 95.9 bits (237), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 104/435 (23%), Positives = 185/435 (42%), Gaps = 69/435 (15%)

Query: 26  RGEIFHSINRLR-KLQLNKRALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQGEKL 84
           RG I   ++  + KL LN  AL   E+  R    R   L + Y+             ++ 
Sbjct: 89  RGSIARCLDIFKNKLSLNDFALVFKEFAGRGDWQRSLRL-FKYM-------------QRQ 134

Query: 85  FCCIPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPG 144
             C P    NE +Y  ++     +G++   LE   +M   G S S   +  LI      G
Sbjct: 135 IWCKP----NEHIYTIMISLLGREGLLDKCLEVFDEMPSQGVSRSVFSYTALINAYGRNG 190

Query: 145 RRKTIPNILRQMKADKVAPHVSTFHILMKIEANDH-NIEGLMKVYSDMKRSEVEPNEVSY 203
           R +T   +L +MK +K++P + T++ ++   A    + EGL+ ++++M+   ++P+ V+Y
Sbjct: 191 RYETSLELLDRMKNEKISPSILTYNTVINACARGGLDWEGLLGLFAEMRHEGIQPDIVTY 250

Query: 204 CILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQE 263
             L +A A+  L                                   G + E ++ T+ +
Sbjct: 251 NTLLSACAIRGL-----------------------------------GDEAEMVFRTMND 275

Query: 264 ---LPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFI 320
              +P++ + S++  +E FG++ ++ +  +L  EM S   L     YN ++  Y K+G I
Sbjct: 276 GGIVPDLTTYSHL--VETFGKLRRLEKVCDLLGEMASGGSLPDITSYNVLLEAYAKSGSI 333

Query: 321 DKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPW 380
            +A G+  +M   GC PNA TY  L L  F  +   +  + L L MK   T       P 
Sbjct: 334 KEAMGVFHQMQAAGCTPNANTYSVL-LNLFGQSGRYDDVRQLFLEMKSSNTD------PD 386

Query: 381 LETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKINDP--NLLR 438
             T   +IE+F E G       LF ++ + N       Y  +I A  K  +++    +L+
Sbjct: 387 AATYNILIEVFGEGGYFKEVVTLFHDMVEENIEPDMETYEGIIFACGKGGLHEDARKILQ 446

Query: 439 RMILGGARPDAETYS 453
            M      P ++ Y+
Sbjct: 447 YMTANDIVPSSKAYT 461



 Score = 60.8 bits (146), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 64/314 (20%), Positives = 130/314 (41%), Gaps = 14/314 (4%)

Query: 133 FNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMK 192
           +N L+   +  G  K    +  QM+A    P+ +T+ +L+ +       + + +++ +MK
Sbjct: 320 YNVLLEAYAKSGSIKEAMGVFHQMQAAGCTPNANTYSVLLNLFGQSGRYDDVRQLFLEMK 379

Query: 193 RSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGK 252
            S  +P+  +Y IL         +    T    + +     +  T + +I   G     +
Sbjct: 380 SSNTDPDAATYNILIEVFGEGGYFKEVVTLFHDMVEENIEPDMETYEGIIFACGKGGLHE 439

Query: 253 DLERI--WATVQEL-PNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNS 309
           D  +I  + T  ++ P+  SK+Y   IEAFG+ A    A   +  M  V    + E ++S
Sbjct: 440 DARKILQYMTANDIVPS--SKAYTGVIEAFGQAALYEEALVAFNTMHEVGSNPSIETFHS 497

Query: 310 VISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLI 369
           ++  + + G + ++  +L  +  +G   N  T+        +    EE  K        +
Sbjct: 498 LLYSFARGGLVKESEAILSRLVDSGIPRNRDTFNAQIEAYKQGGKFEEAVKT------YV 551

Query: 370 TTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKA 429
             +K R   P   T  +++ +++    V      FEE+K ++       Y  ++  Y K 
Sbjct: 552 DMEKSRCD-PDERTLEAVLSVYSFARLVDECREQFEEMKASDILPSIMCYCMMLAVYGKT 610

Query: 430 -KINDPN-LLRRMI 441
            + +D N LL  M+
Sbjct: 611 ERWDDVNELLEEML 624



 Score = 59.7 bits (143), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 59/224 (26%), Positives = 97/224 (43%), Gaps = 16/224 (7%)

Query: 240 VLIILYGYLAKGKDLERIWATVQELPN---VRSK-SYVLAIEAFGRIAQVSRAEELWLEM 295
           +  I+   L +   L++      E+P+    RS  SY   I A+GR  +   + EL   M
Sbjct: 143 IYTIMISLLGREGLLDKCLEVFDEMPSQGVSRSVFSYTALINAYGRNGRYETSLELLDRM 202

Query: 296 QSVKQLKATEQYNSVISVYCKNGFIDKAS--GLLKEMSMNGCKPNAITYRHLALGCFKSN 353
           ++ K   +   YN+VI+  C  G +D     GL  EM   G +P+ +TY  L   C    
Sbjct: 203 KNEKISPSILTYNTVINA-CARGGLDWEGLLGLFAEMRHEGIQPDIVTYNTLLSACAIRG 261

Query: 354 LVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYT 413
           L +E     E+  + +    +    P L T   ++E F +   +    +L  E+      
Sbjct: 262 LGDEA----EMVFRTMNDGGI---VPDLTTYSHLVETFGKLRRLEKVCDLLGEMASGGSL 314

Query: 414 KYTFVYNTLIKAYVKA-KINDP-NLLRRMILGGARPDAETYSLL 455
                YN L++AY K+  I +   +  +M   G  P+A TYS+L
Sbjct: 315 PDITSYNVLLEAYAKSGSIKEAMGVFHQMQAAGCTPNANTYSVL 358


>gi|356514762|ref|XP_003526072.1| PREDICTED: pentatricopeptide repeat-containing protein At4g21705,
           mitochondrial-like [Glycine max]
          Length = 492

 Score = 95.9 bits (237), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 89/415 (21%), Positives = 178/415 (42%), Gaps = 15/415 (3%)

Query: 5   PRGEP---VGSAFQSWMREGFPVHRGEIFHSINRLRKLQLNKRALEVMEWVIRERPYRPK 61
           P G+P   V      W+ EG  V    + H I  LR    N +ALEV EW +  +     
Sbjct: 40  PLGDPSISVVPVLDEWIEEGNAVDGPHLHHIIKILRTRNRNTQALEVSEW-MSSKGLPIS 98

Query: 62  ELDYSYLLEFTIKNHGISQGEKLFCCIPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKM 121
             D +  L+   + HG+   E+    +    +   ++  L+   + +G++  SL  M+KM
Sbjct: 99  SRDQAVQLDLIGRVHGVESAERYLQSLSDGDKTWKVHGALLNCYVREGLVDKSLSLMQKM 158

Query: 122 RVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNI 181
           + +G  +S+L +N ++ L +   + + +P +L QMK D V P++ ++ I +       ++
Sbjct: 159 KDMGF-VSFLNYNNIMSLYTQTQQYEKVPGVLEQMKKDGVPPNIFSYRICINSYCVRGDL 217

Query: 182 EGLMKVYSDMKRS-EVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDV 240
             + K+  +M+R   +  + ++Y ++   +  A +   A   +   EK     N    + 
Sbjct: 218 ANVEKLLEEMEREPHIGIDWITYSMVTNFYIKADMREKALVCLMKCEKKTHRGNTVAYNH 277

Query: 241 LIILYGYLAKGKDLERIW----ATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQ 296
           LI     L     + R W    A  ++  N   + Y+  +    ++ ++ +AE++  E +
Sbjct: 278 LISHNAALRSKGGMMRAWKLQKANCKKQLN---REYITMLGCLVKLGELDKAEKVLGEWE 334

Query: 297 SVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVE 356
                      N ++  YC+ G ++KA  LL++M   G  P   ++  +A G      +E
Sbjct: 335 LSGNTCDFRVPNILLIGYCQRGLVEKAEALLRKMVAEGKTPIPNSWSIVASGYVAKENME 394

Query: 357 EGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKAN 411
           + F+ ++  + +    K     P ++   SI        D+  AE+     K  N
Sbjct: 395 KAFQCMKEAVAVHAQNK--RWRPKVDVISSIFSWVTNNRDIEEAEDFVNSWKSVN 447


>gi|242096946|ref|XP_002438963.1| hypothetical protein SORBIDRAFT_10g029040 [Sorghum bicolor]
 gi|241917186|gb|EER90330.1| hypothetical protein SORBIDRAFT_10g029040 [Sorghum bicolor]
          Length = 502

 Score = 95.5 bits (236), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 73/323 (22%), Positives = 154/323 (47%), Gaps = 12/323 (3%)

Query: 33  INRLRKLQLNKRALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQGEKLFCCIPKDY 92
           +  LR  + +++ALEV EW+  +   +    D++  L+     HG+   E  F  +    
Sbjct: 90  VKELRTRRRHRQALEVSEWMNLKGHVKFLPKDHAVHLDLIGHIHGVGAAETYFNNLSDKD 149

Query: 93  QNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNI 152
           + E  Y  L+     + ++  +L + +KM+ LG   + L +N L+ L ++  + + +P++
Sbjct: 150 KTEKPYGALLNCYTRERLVDKALAHFQKMKELGFVFTALPYNNLMSLYTNIEQHERVPSV 209

Query: 153 LRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEV----SYCILAT 208
           + +MK++ + P   ++ I +       +  GL     +M   E EP  V    +Y ++A+
Sbjct: 210 MAEMKSNGIVPDNFSYRICINSYGTRADFFGLENTLEEM---ECEPQIVVDWNTYTVVAS 266

Query: 209 AHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVR 268
            +    L   A + ++  E  M   + +    LI LYG+L    +++R+WA   ++ N +
Sbjct: 267 QYIKGDLREKAYSALKKAEAKMGIKDLAAYRHLISLYGHLGDKSEVKRLWAV--QMSNCQ 324

Query: 269 ---SKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASG 325
              +  Y   +    ++ +++ AE+L  E ++ K     +  N +++ YC+ G +DKA  
Sbjct: 325 RHLNTDYTNILAVLVKLDEIAEAEDLLKEWETSKNEFDFKVPNVLLTWYCQKGLLDKAEA 384

Query: 326 LLKEMSMNGCKPNAITYRHLALG 348
           LL    + G  P + ++  +A G
Sbjct: 385 LLDGFLIKGKMPPSTSWEIVASG 407


>gi|147803609|emb|CAN75355.1| hypothetical protein VITISV_002476 [Vitis vinifera]
          Length = 736

 Score = 95.5 bits (236), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 78/327 (23%), Positives = 150/327 (45%), Gaps = 18/327 (5%)

Query: 47  EVMEWVI-RERPYRPKELDYSYLLEFTIKNHGISQGEKLFCCIPKDYQNELLYNNLVIAC 105
           +V EW+  R   +R    D +  L+   K  G+S  E  F  +P   +++ +Y  L+ A 
Sbjct: 320 KVYEWMNNRGERFRLSSSDAAIQLDLIAKVCGVSSAEDYFSRLPDTLKDKRIYGALLNAY 379

Query: 106 LDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHV 165
           +   +   +   ++K+R  G++ + L FN ++ L  +      + +++ +M    +   +
Sbjct: 380 VQAKMRDKAEILIEKLRNKGYATTPLPFNVMMTLYMNLKELDKVQSMISEMMNKNIQLDI 439

Query: 166 STFHILMKIEANDHNIEGLMKVYSDMK-RSEVEPNEVSYCILATAHAVARLYTVAETYVE 224
            +++I +   ++  + E + +V+  MK    + PN  ++  +AT +     +  AE  ++
Sbjct: 440 YSYNIWL---SSCESTERMEQVFEQMKLERTINPNWTTFSTMATMYIKLGQFEKAEECLK 496

Query: 225 ALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQ-ELPNVRSKSYVLAIEAFGRIA 283
            +E  +T  +      LI LYG      ++ R W   + + PN+ +  Y   I +  R+ 
Sbjct: 497 KVESRITNRDRMPYHYLISLYGSTGNKAEVYRAWNIYKSKFPNIPNLGYHALISSLVRVG 556

Query: 284 QVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYR 343
            +  AE+++ E  SVK        N ++  Y K GF++KA G L  M   G KPN+ T+ 
Sbjct: 557 DLEGAEKIYEEWLSVKSSYDPRIGNLLLGCYVKEGFLEKAEGFLDHMIEAGGKPNSTTWE 616

Query: 344 HL------------ALGCFKSNLVEEG 358
            L            AL CFK  ++ EG
Sbjct: 617 ILAEGNTGVKKISDALSCFKRAVLAEG 643


>gi|356536682|ref|XP_003536865.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At1g02370, mitochondrial-like [Glycine max]
          Length = 593

 Score = 95.5 bits (236), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 94/449 (20%), Positives = 196/449 (43%), Gaps = 21/449 (4%)

Query: 7   GEPVGSAFQSWMREGFPVHRGEIFHSINRLRKLQLNKRALEVMEWV-IRERPYRPKELDY 65
           G  V      ++ EG  + + E+   + +LRK +  + ALE++EW+ IR+  +     +Y
Sbjct: 41  GGTVSQTLDQYIMEGKVIKKPELERCVEQLRKYRRFQHALEIIEWMEIRKVNFSWS--NY 98

Query: 66  SYLLEFTIKNHGISQGEKLFCCIPKDYQNELLYNNLVIACLDKGVIK-LSLEYMKKMRVL 124
           +  L+   K  G+   E  F  +P   +N   Y  L + C  K ++K  +L +   M  L
Sbjct: 99  AVQLDLVSKTKGVDAAENFFGGLPPPAKNRYTYGAL-LNCYCKELMKDKALSHFDTMDEL 157

Query: 125 GHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGL 184
           G+ ++ L FN ++ L    G  + +P ++  MK   +     T+HI M   A+ +++ G 
Sbjct: 158 GY-VTNLAFNNVMTLFMKLGEPQKVPQLVELMKKRTIPMSPFTYHIWMNSCASSNDLGGA 216

Query: 185 MKVYSDMK-RSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLII 243
            +VY +MK  +E +    +Y  LA+ +   + +  AE  ++ LE+ +          L+ 
Sbjct: 217 ERVYEEMKTENEGQIGWHTYSNLASIYVKFKDFEKAEMMLKMLEEQVKPKQRDAYHCLLG 276

Query: 244 LYGYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKA 303
           LY       ++ R+W +++ +  V + SY++ +    R+  +    + + E ++      
Sbjct: 277 LYAGTGNLGEVHRVWDSLKSVSPVTNFSYLVMLSTLRRLNDMEGLTKCFKEWEASCVSYD 336

Query: 304 TEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALE 363
               +  +S +     +++A  + +E S     P             K + ++   + LE
Sbjct: 337 ARLVSVCVSAHLNQNMLEEAELVFEEASRRSKGPFFRVREEFMKFFLKKHELDAAVRHLE 396

Query: 364 LGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLI 423
             +  +   K R S    +   + ++ + E+ DV   + L + LK  N+       ++ I
Sbjct: 397 AALSEVKGDKWRPSP---QVVGAFLKYYEEETDVDGVDELSKILKANNFD------DSWI 447

Query: 424 KAYVKAKINDPNLLRRMILGGARPDAETY 452
           K+ + A  + P      I  G + D++ Y
Sbjct: 448 KSCITASKSSPE-----IDPGMKEDSQVY 471


>gi|449438238|ref|XP_004136896.1| PREDICTED: pentatricopeptide repeat-containing protein At5g09450,
           mitochondrial-like [Cucumis sativus]
 gi|449478839|ref|XP_004155431.1| PREDICTED: pentatricopeptide repeat-containing protein At5g09450,
           mitochondrial-like [Cucumis sativus]
          Length = 406

 Score = 95.5 bits (236), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 74/342 (21%), Positives = 159/342 (46%), Gaps = 11/342 (3%)

Query: 3   RLPRGEPVGSAFQSWMREGFPVHRGEIFHSINRLRKLQLNKRALEVMEWVIRERPYRPKE 62
           RLP+   +    + W  EG  V   E+ +    LRK+Q  K ALE++EW++        +
Sbjct: 66  RLPKRSAI-RVLERWTSEGNQVTIAELRNISKELRKIQRYKHALEILEWMVSHNQSELSD 124

Query: 63  LDYSYLLEFTIKNHGISQGEKLFCCIPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMR 122
            D++  ++   K  G+   E+ F  +P D +    Y  L+ +     +   +    +KM+
Sbjct: 125 SDFAIRIDLMTKVFGVDAAERYFEGLPIDAKTCETYTALLHSFAGSKLTDKAETLYEKMK 184

Query: 123 VLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIE 182
                ++ L FN ++ L +S G+ + + +I+  +K   V P + T+++ +   A   NI+
Sbjct: 185 ESDIPLTALPFNEMMTLYTSIGQVEKVSSIVDDLKQRMVHPDIFTYNLWISSLAAALNID 244

Query: 183 GLMKVYSDMKRS-EVEPNEVSYCILATAH--AVARLYTVAETYVEALEKSMTGNNWSTLD 239
           G+ ++ ++M  +     N V Y  L   +  +   L++ + + VE++   ++   W T D
Sbjct: 245 GVKQILNEMNHNPNSNENWVRYIELVNIYVKSANLLHSESNSVVESV-SGISQREWITYD 303

Query: 240 VLIILYGYLAKGKDLERIWATVQELPN-VRSKSYVLAIEAF---GRIAQVSRAEELWLEM 295
           +LIILY  L     +++IW +++     + S++Y+  +  +     + ++    + W   
Sbjct: 304 LLIILYAGLGNKDKIDQIWRSLRMTKQKMTSRNYICIVSCYLMLDDLKEIGEVIDQW--K 361

Query: 296 QSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKP 337
           QS          N +++ + + G  +KA+  +  +    C+P
Sbjct: 362 QSTTTDFDISSCNRLVNAFIEAGLHEKANSFVNVLIQKNCEP 403


>gi|359484901|ref|XP_002268952.2| PREDICTED: pentatricopeptide repeat-containing protein At5g09450,
           mitochondrial [Vitis vinifera]
          Length = 396

 Score = 95.5 bits (236), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 72/296 (24%), Positives = 140/296 (47%), Gaps = 7/296 (2%)

Query: 3   RLPRGEPVGSAFQSWMREGFPVHRGEIFHSINRLRKLQLNKRALEVMEWVIRERPYRPKE 62
           RLP+   V +  Q W+ EG  VH  E+ +    LR+ Q  K ALE+ EW++    +   +
Sbjct: 54  RLPK-RSVTNVLQRWLGEGNQVHISELRNISKELRRAQRYKHALEISEWMVSHDEFELSD 112

Query: 63  LDYSYLLEFTIKNHGISQGEKLFCCIPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMR 122
            D +  ++   +  GI   E+ F  +P   +    Y  L+ +     + + + E  ++++
Sbjct: 113 SDNAVRIDLMTRVFGIDAAERYFEGLPSAAKTSETYTALLHSYAGAKLAEKAEELYERIK 172

Query: 123 VLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIE 182
                ++ L++N ++ L  S G+ + +  ++ ++K  KV P + T+++ +   A   +I+
Sbjct: 173 ESNVPLNILLYNEMMTLYMSVGQVEKVSLVVEELKRQKVVPDLFTYNLWVSSCAATLDID 232

Query: 183 GLMKVYSDMK-RSEVEPNEVSYCILATAHAVA-RLYTVAETYVEALEKSMTGNNWSTLDV 240
           G+ ++  +M   S      V Y  LA  + +A  L   A   V     + T  +W T D 
Sbjct: 233 GVRRILKEMSNNSSANDGWVRYRNLANIYIMAGHLVNSASNSVVEAGTNTTQRDWITYDF 292

Query: 241 LIILYGYLAKGKDLERIWATVQELPN-VRSKSYVLAIEAF---GRIAQVSRAEELW 292
           LIILY  L     +++IW +++     ++S+SYV  + ++   G I  V    + W
Sbjct: 293 LIILYAGLGNKDKIDQIWKSLKMTKQKIKSRSYVCILSSYVMLGHIKDVGIVIDEW 348


>gi|357118714|ref|XP_003561096.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At5g39710-like [Brachypodium distachyon]
          Length = 718

 Score = 95.1 bits (235), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 102/408 (25%), Positives = 175/408 (42%), Gaps = 22/408 (5%)

Query: 58  YRPKELDYSYLLEFTIKNHGISQGEKLFCCIPKD--YQNELLYNNLVIACLDKGVIKLSL 115
           Y P  L Y+ +L   + +  +    +L   + +D    N   YN LV A   +G  + +L
Sbjct: 116 YAPSLLAYNAVL-LALSDASLPSARRLLASMLRDGVAPNVYTYNILVRALCARGQREEAL 174

Query: 116 EYM-KKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKI 174
             +   MR  G + + + +N L+      G       ++  M+   V P + TF+ ++  
Sbjct: 175 GVVGDDMRGAGCAPNVVTYNTLVAAFCRAGEVDAAERLVGVMREGGVRPSLVTFNTVVNG 234

Query: 175 EANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVAR-LYTVAETYVEALEKSMTGN 233
                 +E   K++ +M R  + P+ VSY  L + +  A  L+     + E  +K +   
Sbjct: 235 LCKAGRMEDARKMFDEMAREGLTPDGVSYNTLVSGYCKAGCLHEALAVFAEMAQKGVV-P 293

Query: 234 NWSTLDVLIILYGYLAKGKDLERIWATVQELPN----VRSKSYVLAIEAFGRIAQVSRAE 289
           +  T   LI     + +  +LER  A V ++      +   ++   I+ F R   +  A 
Sbjct: 294 DVVTFTSLI---HAMCRAGNLERAVALVGQMRERGLRMNEFTFTALIDGFCRNGFLDDAL 350

Query: 290 ELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGC 349
               EM+  +   +   YN +I+ YCK G +D+A  L+ EM   G KP+ +TY  +  G 
Sbjct: 351 LAMKEMRECRIQPSVVCYNVLINGYCKLGRMDEARELIHEMEAKGMKPDVVTYSTILSGY 410

Query: 350 FKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKK 409
            K    +  F   EL  K++     +   P   T  S+I    E+  +G+A  LFE++ +
Sbjct: 411 CKIGDTDSAF---ELNRKMLK----KGVVPDAITYSSLIRGLCEERRLGDACELFEKMLQ 463

Query: 410 ANYTKYTFVYNTLIKAYVK-AKINDP-NLLRRMILGGARPDAETYSLL 455
                  F Y TLI  + K   +    +L   MI  G  PD  TYS+L
Sbjct: 464 LGLQPDEFTYTTLIDGHCKEGNVQKALSLHDEMIKKGVLPDVVTYSVL 511



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 85/406 (20%), Positives = 163/406 (40%), Gaps = 31/406 (7%)

Query: 45  ALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQGEKLFCCIPKD--YQNELLYNNLV 102
           A E +  V+RE   RP  + ++ ++    K   +    K+F  + ++    + + YN LV
Sbjct: 208 AAERLVGVMREGGVRPSLVTFNTVVNGLCKAGRMEDARKMFDEMAREGLTPDGVSYNTLV 267

Query: 103 IACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVA 162
                 G +  +L    +M   G     + F  LI      G  +    ++ QM+   + 
Sbjct: 268 SGYCKAGCLHEALAVFAEMAQKGVVPDVVTFTSLIHAMCRAGNLERAVALVGQMRERGLR 327

Query: 163 PHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHA-VARLYTVAET 221
            +  TF  L+     +  ++  +    +M+   ++P+ V Y +L   +  + R+    E 
Sbjct: 328 MNEFTFTALIDGFCRNGFLDDALLAMKEMRECRIQPSVVCYNVLINGYCKLGRMDEAREL 387

Query: 222 YVEALEKSMTGN--NWSTLDVLIILYGYLAKGK-----DLERIWATVQELPNVRSKSYVL 274
             E   K M  +   +ST     IL GY   G      +L R       +P+  + +Y  
Sbjct: 388 IHEMEAKGMKPDVVTYST-----ILSGYCKIGDTDSAFELNRKMLKKGVVPD--AITYSS 440

Query: 275 AIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNG 334
            I       ++  A EL+ +M  +        Y ++I  +CK G + KA  L  EM   G
Sbjct: 441 LIRGLCEERRLGDACELFEKMLQLGLQPDEFTYTTLIDGHCKEGNVQKALSLHDEMIKKG 500

Query: 335 CKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSS-----------TPWLET 383
             P+ +TY  L  G  KS   +E  + L    KL     V  +           T   ++
Sbjct: 501 VLPDVVTYSVLIDGLSKSARTKEAQRLL---FKLYYEDPVPDNIKYEALMHCCRTAEFKS 557

Query: 384 TLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKA 429
            +++++ F+ KG +  A+ +++ +   ++     VY+ LI  + + 
Sbjct: 558 VVALLKGFSMKGLMNQADKVYQSMLDRHWKLDGSVYSVLIHGHCRG 603



 Score = 42.0 bits (97), Expect = 0.67,   Method: Compositional matrix adjust.
 Identities = 69/334 (20%), Positives = 137/334 (41%), Gaps = 31/334 (9%)

Query: 94  NELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNIL 153
           NE  +  L+      G +  +L  MK+MR      S + +N LI      GR      ++
Sbjct: 329 NEFTFTALIDGFCRNGFLDDALLAMKEMRECRIQPSVVCYNVLINGYCKLGRMDEARELI 388

Query: 154 RQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVA 213
            +M+A  + P V T+  ++       + +   ++   M +  V P+ ++Y  L       
Sbjct: 389 HEMEAKGMKPDVVTYSTILSGYCKIGDTDSAFELNRKMLKKGVVPDAITYSSLIRGLCEE 448

Query: 214 R-LYTVAETYVEALEKSMTGNNWSTLDVLIILY---GYLAKGKDLERIWATVQELPNVRS 269
           R L    E + + L+  +  + + T   LI  +   G + K   L         LP+V  
Sbjct: 449 RRLGDACELFEKMLQLGLQPDEF-TYTTLIDGHCKEGNVQKALSLHDEMIKKGVLPDV-- 505

Query: 270 KSYVLAIEAFGRIAQVSRAEELWLEM------------QSVKQLKATEQYNSVISV---Y 314
            +Y + I+   + A+   A+ L  ++            +++     T ++ SV+++   +
Sbjct: 506 VTYSVLIDGLSKSARTKEAQRLLFKLYYEDPVPDNIKYEALMHCCRTAEFKSVVALLKGF 565

Query: 315 CKNGFIDKASGLLKEMSMNGCKPNAITYRHLALG-CFKSNLVEEGFKALELGMKLITTKK 373
              G +++A  + + M     K +   Y  L  G C   N++    KAL    +L+    
Sbjct: 566 SMKGLMNQADKVYQSMLDRHWKLDGSVYSVLIHGHCRGGNIM----KALSFHKQLLRCGF 621

Query: 374 VRSSTPWLETTLSIIEIFAEKGDVGNAENLFEEL 407
             +ST    +T+S++    E+G    A+N+ +EL
Sbjct: 622 SPNST----STISLVRGLFEEGMTVEADNVIQEL 651



 Score = 39.3 bits (90), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 66/350 (18%), Positives = 135/350 (38%), Gaps = 28/350 (8%)

Query: 29  IFHSINRLRKLQLNKRALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQG-----EK 83
           + H++ R   L+   RA+ ++   +RER  R  E  ++ L++   +N  +        E 
Sbjct: 301 LIHAMCRAGNLE---RAVALVGQ-MRERGLRMNEFTFTALIDGFCRNGFLDDALLAMKEM 356

Query: 84  LFCCIPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSP 143
             C I       + YN L+      G +  + E + +M   G     + ++ ++      
Sbjct: 357 RECRIQPSV---VCYNVLINGYCKLGRMDEARELIHEMEAKGMKPDVVTYSTILSGYCKI 413

Query: 144 GRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSY 203
           G   +   + R+M    V P   T+  L++    +  +    +++  M +  ++P+E +Y
Sbjct: 414 GDTDSAFELNRKMLKKGVVPDAITYSSLIRGLCEERRLGDACELFEKMLQLGLQPDEFTY 473

Query: 204 CILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIW----- 258
             L   H        A +  + + K     +  T  VLI      A+ K+ +R+      
Sbjct: 474 TTLIDGHCKEGNVQKALSLHDEMIKKGVLPDVVTYSVLIDGLSKSARTKEAQRLLFKLYY 533

Query: 259 -----------ATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQY 307
                      A +        KS V  ++ F     +++A++++  M           Y
Sbjct: 534 EDPVPDNIKYEALMHCCRTAEFKSVVALLKGFSMKGLMNQADKVYQSMLDRHWKLDGSVY 593

Query: 308 NSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEE 357
           + +I  +C+ G I KA    K++   G  PN+ +   L  G F+  +  E
Sbjct: 594 SVLIHGHCRGGNIMKALSFHKQLLRCGFSPNSTSTISLVRGLFEEGMTVE 643


>gi|15228936|ref|NP_188942.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75273922|sp|Q9LS88.1|PP250_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g23020
 gi|9294191|dbj|BAB02093.1| unnamed protein product [Arabidopsis thaliana]
 gi|332643185|gb|AEE76706.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 842

 Score = 94.7 bits (234), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 82/333 (24%), Positives = 152/333 (45%), Gaps = 15/333 (4%)

Query: 98  YNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMK 157
           YN ++      G IK + E  K+M   G   + + FN +I +  + G+   + ++++ MK
Sbjct: 301 YNTMIDTYGKSGQIKEASETFKRMLEEGIVPTTVTFNTMIHIYGNNGQLGEVTSLMKTMK 360

Query: 158 ADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYT 217
               AP   T++IL+ +   +++IE     + +MK   ++P+ VSY  L  A ++  +  
Sbjct: 361 L-HCAPDTRTYNILISLHTKNNDIERAGAYFKEMKDDGLKPDPVSYRTLLYAFSIRHMVE 419

Query: 218 VAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQEL---PNVRSKSYVL 274
            AE  +  ++      +  T   L  +Y    + + LE+ W+  +      N+ S+ Y  
Sbjct: 420 EAEGLIAEMDDDNVEIDEYTQSALTRMY---VEAEMLEKSWSWFKRFHVAGNMSSEGYSA 476

Query: 275 AIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNG 334
            I+A+G    +S AE +++  Q V +    E YN +I  Y  +   +KA  L + M   G
Sbjct: 477 NIDAYGERGYLSEAERVFICCQEVNKRTVIE-YNVMIKAYGISKSCEKACELFESMMSYG 535

Query: 335 CKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEK 394
             P+  TY  L      +++  +G   LE   K+  T  V    P+     ++I  F + 
Sbjct: 536 VTPDKCTYNTLVQILASADMPHKGRCYLE---KMRETGYVSDCIPY----CAVISSFVKL 588

Query: 395 GDVGNAENLFEELKKANYTKYTFVYNTLIKAYV 427
           G +  AE +++E+ + N      VY  LI A+ 
Sbjct: 589 GQLNMAEEVYKEMVEYNIEPDVVVYGVLINAFA 621



 Score = 60.1 bits (144), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 81/372 (21%), Positives = 156/372 (41%), Gaps = 50/372 (13%)

Query: 126 HSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLM 185
           + ++ + +N ++ +     + + + ++  +M    + P  ST+  L+ + +     +G +
Sbjct: 183 YELNVIHYNIMLRILGKACKWRYVQSLWDEMIRKGIKPINSTYGTLIDVYS-----KGGL 237

Query: 186 KVYS-----DMKRSEVEPNEVSYCILATAHAVARLYTVAETYV------EALEKSMTGNN 234
           KV++      M +  ++P+EV+  I+   +  AR +  AE +       E    S    +
Sbjct: 238 KVHALCWLGKMSKIGMQPDEVTTGIVLQMYKKAREFQKAEEFFKKWSCDENKADSHVCLS 297

Query: 235 WSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSK-SYVLAIEAFGRIAQVSRAEELWL 293
             T + +I  YG   + K+    +  + E   V +  ++   I  +G   Q+     L  
Sbjct: 298 SYTYNTMIDTYGKSGQIKEASETFKRMLEEGIVPTTVTFNTMIHIYGNNGQLGEVTSLMK 357

Query: 294 EMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSN 353
            M+ +     T  YN +IS++ KN  I++A    KEM  +G KP+ ++YR L       +
Sbjct: 358 TMK-LHCAPDTRTYNILISLHTKNNDIERAGAYFKEMKDDGLKPDPVSYRTLLYAFSIRH 416

Query: 354 LVEEG----------------FKALELGMKLITTKKVRSSTPWL-----------ETTLS 386
           +VEE                 +    L    +  + +  S  W            E   +
Sbjct: 417 MVEEAEGLIAEMDDDNVEIDEYTQSALTRMYVEAEMLEKSWSWFKRFHVAGNMSSEGYSA 476

Query: 387 IIEIFAEKGDVGNAENLFEELKKANYTKYTFV-YNTLIKAYVKAKINDP--NLLRRMILG 443
            I+ + E+G +  AE +F   ++ N  K T + YN +IKAY  +K  +    L   M+  
Sbjct: 477 NIDAYGERGYLSEAERVFICCQEVN--KRTVIEYNVMIKAYGISKSCEKACELFESMMSY 534

Query: 444 GARPDAETYSLL 455
           G  PD  TY+ L
Sbjct: 535 GVTPDKCTYNTL 546



 Score = 58.5 bits (140), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 68/342 (19%), Positives = 145/342 (42%), Gaps = 16/342 (4%)

Query: 61  KELDYSYLLEFT--IKNHGISQGEKLFCCIPKDYQ------NELLYNNLVIACLDKGVIK 112
           +E++   ++E+   IK +GIS+  +  C + +         ++  YN LV       +  
Sbjct: 498 QEVNKRTVIEYNVMIKAYGISKSCEKACELFESMMSYGVTPDKCTYNTLVQILASADMPH 557

Query: 113 LSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILM 172
               Y++KMR  G+    + +  +I      G+      + ++M    + P V  + +L+
Sbjct: 558 KGRCYLEKMRETGYVSDCIPYCAVISSFVKLGQLNMAEEVYKEMVEYNIEPDVVVYGVLI 617

Query: 173 KIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTG 232
              A+  N++  M     MK + +  N V Y  L   +        AE     L +S   
Sbjct: 618 NAFADTGNVQQAMSYVEAMKEAGIPGNSVIYNSLIKLYTKVGYLDEAEAIYRKLLQSCNK 677

Query: 233 NNWS---TLDVLIILYGYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAE 289
             +    T + +I LY   +  +  E I+ ++++       ++ + +  + +  +   A 
Sbjct: 678 TQYPDVYTSNCMINLYSERSMVRKAEAIFDSMKQRGEANEFTFAMMLCMYKKNGRFEEAT 737

Query: 290 ELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGC 349
           ++  +M+ +K L     YNSV+ ++  +G   +A    KEM  +G +P+  T++ L    
Sbjct: 738 QIAKQMREMKILTDPLSYNSVLGLFALDGRFKEAVETFKEMVSSGIQPDDSTFKSLGTIL 797

Query: 350 FKSNLVEEGFKALELGMKLITTKKV-RSSTPWLETTLSIIEI 390
            K  + ++  + +E     I  K++ R    W+ T  S++ I
Sbjct: 798 MKLGMSKKAVRKIE----EIRKKEIKRGLELWISTLSSLVGI 835


>gi|297790207|ref|XP_002863007.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297308804|gb|EFH39266.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 842

 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 82/333 (24%), Positives = 156/333 (46%), Gaps = 15/333 (4%)

Query: 98  YNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMK 157
           YN ++      G IK + E  K+M   G   + + FN +I +  + G+   + ++++ MK
Sbjct: 301 YNTMIDTYGKSGQIKEASETFKRMLEEGIVPTTVTFNTMIHVYGNNGQFGEVTSLMKTMK 360

Query: 158 ADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYT 217
               AP   T++IL+ +   +++IE     + +MK + ++P+ VSY  L  A ++ R+  
Sbjct: 361 F-HCAPDTRTYNILISLHTKNNDIERAGTYFKEMKGAGLKPDPVSYRTLLYAFSIRRMVK 419

Query: 218 VAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWA---TVQELPNVRSKSYVL 274
            AE  +  ++ +    +  T   L  +Y    + + LE+ W+    V    N+ S+ Y  
Sbjct: 420 EAEELIAEMDDNDVEIDEYTQSALTRMY---IEAEMLEKSWSWFRRVHVAGNMSSEGYSA 476

Query: 275 AIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNG 334
            I+A+G    +S AE +++  Q V + +   +YN +I  Y  +   +KA  L + M   G
Sbjct: 477 NIDAYGERGYLSEAERVFICCQEVNK-RTVLEYNVMIKAYGISKSCEKACELFESMMSYG 535

Query: 335 CKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEK 394
             P+  TY  L      +++ ++    LE   K+  T  V    P+     ++I  F + 
Sbjct: 536 VTPDKCTYNTLVQILASADMPDKAKCYLE---KMRETGYVSDCIPY----CAVISSFVKL 588

Query: 395 GDVGNAENLFEELKKANYTKYTFVYNTLIKAYV 427
           G +  AE +++E+ + N      VY  LI A+ 
Sbjct: 589 GQLNMAEEVYKEMVEYNIEPDVVVYGVLINAFA 621



 Score = 55.5 bits (132), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 81/373 (21%), Positives = 154/373 (41%), Gaps = 52/373 (13%)

Query: 126 HSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLM 185
           + ++ + +N ++ +     + + + ++  +M    + P  ST+  L+ + +     +G +
Sbjct: 183 YELNVIHYNIMLRILGKACKWRYVQSLWDEMIRKGIKPINSTYGTLIDVYS-----KGGL 237

Query: 186 KVYS-----DMKRSEVEPNEVSYCILATAHAVARLYTVAETYV------EALEKSMTGNN 234
           KV++      M +  ++P+EV+  I+   +  AR +  AE +       E    S    +
Sbjct: 238 KVHALCWLGKMSKIGMQPDEVTTGIVLQMYKKAREFQKAEEFFKKWSCDENKADSHVCLS 297

Query: 235 WSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSK-SYVLAIEAFGRIAQVSRAEELWL 293
             T + +I  YG   + K+    +  + E   V +  ++   I  +G   Q      L  
Sbjct: 298 SYTYNTMIDTYGKSGQIKEASETFKRMLEEGIVPTTVTFNTMIHVYGNNGQFGEVTSL-- 355

Query: 294 EMQSVKQLKA--TEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFK 351
            M+++K   A  T  YN +IS++ KN  I++A    KEM   G KP+ ++YR L      
Sbjct: 356 -MKTMKFHCAPDTRTYNILISLHTKNNDIERAGTYFKEMKGAGLKPDPVSYRTLLYAFSI 414

Query: 352 SNLVEEG----------------FKALELGMKLITTKKVRSSTPWL-----------ETT 384
             +V+E                 +    L    I  + +  S  W            E  
Sbjct: 415 RRMVKEAEELIAEMDDNDVEIDEYTQSALTRMYIEAEMLEKSWSWFRRVHVAGNMSSEGY 474

Query: 385 LSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKINDP--NLLRRMIL 442
            + I+ + E+G +  AE +F   ++ N  +    YN +IKAY  +K  +    L   M+ 
Sbjct: 475 SANIDAYGERGYLSEAERVFICCQEVN-KRTVLEYNVMIKAYGISKSCEKACELFESMMS 533

Query: 443 GGARPDAETYSLL 455
            G  PD  TY+ L
Sbjct: 534 YGVTPDKCTYNTL 546



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 73/357 (20%), Positives = 147/357 (41%), Gaps = 52/357 (14%)

Query: 78  ISQGEKLF-CCIPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRL 136
           +S+ E++F CC   + +  L YN ++ A       + + E  + M   G +     +N L
Sbjct: 487 LSEAERVFICCQEVNKRTVLEYNVMIKAYGISKSCEKACELFESMMSYGVTPDKCTYNTL 546

Query: 137 I-ILNSS--PGRRKTIPNILRQMK-ADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMK 192
           + IL S+  P + K     +R+        P+ +     +K+      +    +VY +M 
Sbjct: 547 VQILASADMPDKAKCYLEKMRETGYVSDCIPYCAVISSFVKL----GQLNMAEEVYKEMV 602

Query: 193 RSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILY---GYLA 249
              +EP+ V Y +L  A A       A +YVEA++++    N    + LI LY   GYL 
Sbjct: 603 EYNIEPDVVVYGVLINAFADTGNVQQAMSYVEAMKEAGIPGNSVIYNSLIKLYTKVGYLD 662

Query: 250 KGKDL-----------------------------------ERIWATVQELPNVRSKSYVL 274
           + + +                                   E I+ ++++       ++ +
Sbjct: 663 EAEAIYRKLLRSCNETQYPDVYTSHCMNNLCSERSMVRKAEAIFESMKQRREANEFTFAM 722

Query: 275 AIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNG 334
            +  + +  +   A ++  +M+ ++ L     YNSV+ +Y  +G   +A    KEM  +G
Sbjct: 723 MLCMYKKNGRFEEATQIAKQMREMRILTDPLSYNSVLGLYALDGRFKEAVETFKEMVSSG 782

Query: 335 CKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKV-RSSTPWLETTLSIIEI 390
            +P+  T++ L     K  + ++  + +E     I  K++ R    W+ T  S++ I
Sbjct: 783 IQPDDSTFKSLGTILIKLGMSKKAVRKIE----EIRKKEIKRGLELWISTLSSLVGI 835


>gi|388490914|gb|AFK33523.1| unknown [Lotus japonicus]
          Length = 358

 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 71/281 (25%), Positives = 128/281 (45%), Gaps = 8/281 (2%)

Query: 14  FQSWMREGFPVHRGEIFHSINRLRKLQLNKRALEVMEWVIRERPYRPKELDYSYLLEFTI 73
              W+ EG  V   E+      LR+ Q  K ALE+ EW+I    +   + DY+  ++   
Sbjct: 70  LHKWVLEGNSVTVSELRDIAKELRRSQRYKHALEISEWMITHEEHGLSDSDYAMRIDLMT 129

Query: 74  KNHGISQGEKLFCCIPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVF 133
           K  GI   E+ F  +P   +    Y  L+ +     + + + E  ++++    S   L +
Sbjct: 130 KVFGIDAAERYFEALPVAAKTSETYTALLHSYAGAKMTEKAEELYQRIKDSNLSFDALTY 189

Query: 134 NRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKR 193
           N ++ L  S G+ + +P+++ ++K   V+P + T+++ +   A   NI+ + ++  +M  
Sbjct: 190 NEMMTLYMSVGQVEKVPSVVEELKQRNVSPDIFTYNLWISSCAATLNIDEVRRILDEMSH 249

Query: 194 SEVEPNE--VSYCILATAHAVA-RLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAK 250
              + NE    Y  LA  +  A RL   +   +   EK +T + W T D LIILY  L  
Sbjct: 250 G-ADSNESWTRYLNLANVYVTASRLDNSSSNSLAETEKRITQSQWITYDFLIILYAGLGS 308

Query: 251 GKDLERIW----ATVQELPNVRSKSYVLAIEAFGRIAQVSR 287
              L++IW     T Q++ N      + A    G + +V R
Sbjct: 309 KDKLDQIWNSLRMTKQKMINRNYSCIISAYLMLGHVKEVVR 349


>gi|326502008|dbj|BAK06496.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 551

 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 79/349 (22%), Positives = 151/349 (43%), Gaps = 15/349 (4%)

Query: 10  VGSAFQSWMREGFPVHRGEIFHSINRLRKLQLNKRALEVMEWVIRERPYRPKELDYSYLL 69
           V +    W+REG      ++   +  LR+ + + +ALE+M+W++  +       +++  L
Sbjct: 101 VSAVLNKWLREGRETRSVDLERYVKELRRYKRHSQALELMDWMVHTKGMNMSYTNHAIRL 160

Query: 70  EFTIKNHGISQGEKLFCCIPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSIS 129
           +   K  G+   EK F  +P   +N   +  L+         + + +  +KM  LG S S
Sbjct: 161 DLIYKVRGLEAAEKYFEGLPDPAKNHRTFGALLNCYCSSKEEEKATDLYRKMDELGISSS 220

Query: 130 YLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYS 189
            L  N L+ L    G+ K + ++  +MK   V P   T  ILM   A  + I+ + +V  
Sbjct: 221 TLPINNLMSLYMKLGQHKKVCSLFEEMKEKNVKPDNLTCCILMTSLAALNKIDDVEQVLK 280

Query: 190 DMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNW-STLDVLIILYGYL 248
           +M+  +      +Y  LA+ +  A L   AE+ ++ LE  +   +     D L+ LY  +
Sbjct: 281 EMEEKDGVLGWSAYSTLASIYQSAGLVEKAESALKKLEGLVQDRDGRQPFDFLMSLYASV 340

Query: 249 AKGKDLERIWATVQE-LPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQY 307
               +++R+W  V+   P V + SY   ++A  ++      ++++ E +S  +    +  
Sbjct: 341 GNLSEVKRVWGVVKATFPKVTNTSYFSMLQALLKLNDADYMKQVFEEWESNHEFYDAKLT 400

Query: 308 NSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVE 356
           N +   + KNG   +A  L ++    G              CF S   E
Sbjct: 401 NVMTRAHLKNGMAKEAELLWEKAKEKG-------------ACFDSKTCE 436


>gi|334184699|ref|NP_001189682.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|330253975|gb|AEC09069.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 613

 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 101/437 (23%), Positives = 190/437 (43%), Gaps = 23/437 (5%)

Query: 33  INRLRKLQLNKR---ALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQGEKLFCCI- 88
           IN   +L+LNK+    + V EW++R+  ++P  + ++ L++   +     + E L+  + 
Sbjct: 145 INVSVQLRLNKKWDSIILVCEWILRKSSFQPDVICFNLLIDAYGQKFQYKEAESLYVQLL 204

Query: 89  -PKDYQNELLYNNLVIACLDKGVIK---LSLEYMKKMRVLGHSISYLVFNRLI-ILNSSP 143
             +    E  Y  L+ A    G+I+   + L  M+   V   +I   V+N  I  L    
Sbjct: 205 ESRYVPTEDTYALLIKAYCMAGLIERAEVVLVEMQNHHVSPKTIGVTVYNAYIEGLMKRK 264

Query: 144 GRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSY 203
           G  +   ++ ++MK D+  P   T+++++ +           K+Y +M+  + +PN  +Y
Sbjct: 265 GNTEEAIDVFQRMKRDRCKPTTETYNLMINLYGKASKSYMSWKLYCEMRSHQCKPNICTY 324

Query: 204 CILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQE 263
             L  A A   L   AE   E L++     +    + L+  Y           I++ +Q 
Sbjct: 325 TALVNAFAREGLCEKAEEIFEQLQEDGLEPDVYVYNALMESYSRAGYPYGAAEIFSLMQH 384

Query: 264 LPNVRSK-SYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDK 322
           +     + SY + ++A+GR    S AE ++ EM+ +      + +  ++S Y K   + K
Sbjct: 385 MGCEPDRASYNIMVDAYGRAGLHSDAEAVFEEMKRLGIAPTMKSHMLLLSAYSKARDVTK 444

Query: 323 ASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEE--GFKALELGMKLITTKKVRSSTPW 380
              ++KEMS NG +P+      +       NL      F  +E   K++   +    T  
Sbjct: 445 CEAIVKEMSENGVEPDTFVLNSML------NLYGRLGQFTKME---KILAEMENGPCTAD 495

Query: 381 LETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAK--INDPNLLR 438
           + T   +I I+ + G +   E LF ELK+ N+      + + I AY + K  +    +  
Sbjct: 496 ISTYNILINIYGKAGFLERIEELFVELKEKNFRPDVVTWTSRIGAYSRKKLYVKCLEVFE 555

Query: 439 RMILGGARPDAETYSLL 455
            MI  G  PD  T  +L
Sbjct: 556 EMIDSGCAPDGGTAKVL 572



 Score = 75.1 bits (183), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 76/340 (22%), Positives = 144/340 (42%), Gaps = 12/340 (3%)

Query: 42  NKRALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQGEKLFC------CIPKDYQNE 95
            + A++V + + R+R  +P    Y+ ++    K        KL+C      C P    N 
Sbjct: 267 TEEAIDVFQRMKRDRC-KPTTETYNLMINLYGKASKSYMSWKLYCEMRSHQCKP----NI 321

Query: 96  LLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQ 155
             Y  LV A   +G+ + + E  ++++  G      V+N L+   S  G       I   
Sbjct: 322 CTYTALVNAFAREGLCEKAEEIFEQLQEDGLEPDVYVYNALMESYSRAGYPYGAAEIFSL 381

Query: 156 MKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARL 215
           M+     P  ++++I++              V+ +MKR  + P   S+ +L +A++ AR 
Sbjct: 382 MQHMGCEPDRASYNIMVDAYGRAGLHSDAEAVFEEMKRLGIAPTMKSHMLLLSAYSKARD 441

Query: 216 YTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRS-KSYVL 274
            T  E  V+ + ++    +   L+ ++ LYG L +   +E+I A ++  P      +Y +
Sbjct: 442 VTKCEAIVKEMSENGVEPDTFVLNSMLNLYGRLGQFTKMEKILAEMENGPCTADISTYNI 501

Query: 275 AIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNG 334
            I  +G+   + R EEL++E++          + S I  Y +     K   + +EM  +G
Sbjct: 502 LINIYGKAGFLERIEELFVELKEKNFRPDVVTWTSRIGAYSRKKLYVKCLEVFEEMIDSG 561

Query: 335 CKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKV 374
           C P+  T + L   C     VE+    L    K +T   +
Sbjct: 562 CAPDGGTAKVLLSACSSEEQVEQVTSVLRTMHKGVTVSSL 601


>gi|15226907|ref|NP_181058.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75100538|sp|O82178.1|PP186_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g35130
 gi|3668091|gb|AAC61823.1| hypothetical protein [Arabidopsis thaliana]
 gi|330253974|gb|AEC09068.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 591

 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 101/437 (23%), Positives = 190/437 (43%), Gaps = 23/437 (5%)

Query: 33  INRLRKLQLNKR---ALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQGEKLFCCI- 88
           IN   +L+LNK+    + V EW++R+  ++P  + ++ L++   +     + E L+  + 
Sbjct: 123 INVSVQLRLNKKWDSIILVCEWILRKSSFQPDVICFNLLIDAYGQKFQYKEAESLYVQLL 182

Query: 89  -PKDYQNELLYNNLVIACLDKGVIK---LSLEYMKKMRVLGHSISYLVFNRLI-ILNSSP 143
             +    E  Y  L+ A    G+I+   + L  M+   V   +I   V+N  I  L    
Sbjct: 183 ESRYVPTEDTYALLIKAYCMAGLIERAEVVLVEMQNHHVSPKTIGVTVYNAYIEGLMKRK 242

Query: 144 GRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSY 203
           G  +   ++ ++MK D+  P   T+++++ +           K+Y +M+  + +PN  +Y
Sbjct: 243 GNTEEAIDVFQRMKRDRCKPTTETYNLMINLYGKASKSYMSWKLYCEMRSHQCKPNICTY 302

Query: 204 CILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQE 263
             L  A A   L   AE   E L++     +    + L+  Y           I++ +Q 
Sbjct: 303 TALVNAFAREGLCEKAEEIFEQLQEDGLEPDVYVYNALMESYSRAGYPYGAAEIFSLMQH 362

Query: 264 LPNVRSK-SYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDK 322
           +     + SY + ++A+GR    S AE ++ EM+ +      + +  ++S Y K   + K
Sbjct: 363 MGCEPDRASYNIMVDAYGRAGLHSDAEAVFEEMKRLGIAPTMKSHMLLLSAYSKARDVTK 422

Query: 323 ASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEE--GFKALELGMKLITTKKVRSSTPW 380
              ++KEMS NG +P+      +       NL      F  +E   K++   +    T  
Sbjct: 423 CEAIVKEMSENGVEPDTFVLNSML------NLYGRLGQFTKME---KILAEMENGPCTAD 473

Query: 381 LETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAK--INDPNLLR 438
           + T   +I I+ + G +   E LF ELK+ N+      + + I AY + K  +    +  
Sbjct: 474 ISTYNILINIYGKAGFLERIEELFVELKEKNFRPDVVTWTSRIGAYSRKKLYVKCLEVFE 533

Query: 439 RMILGGARPDAETYSLL 455
            MI  G  PD  T  +L
Sbjct: 534 EMIDSGCAPDGGTAKVL 550



 Score = 75.1 bits (183), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 76/340 (22%), Positives = 144/340 (42%), Gaps = 12/340 (3%)

Query: 42  NKRALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQGEKLFC------CIPKDYQNE 95
            + A++V + + R+R  +P    Y+ ++    K        KL+C      C P    N 
Sbjct: 245 TEEAIDVFQRMKRDRC-KPTTETYNLMINLYGKASKSYMSWKLYCEMRSHQCKP----NI 299

Query: 96  LLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQ 155
             Y  LV A   +G+ + + E  ++++  G      V+N L+   S  G       I   
Sbjct: 300 CTYTALVNAFAREGLCEKAEEIFEQLQEDGLEPDVYVYNALMESYSRAGYPYGAAEIFSL 359

Query: 156 MKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARL 215
           M+     P  ++++I++              V+ +MKR  + P   S+ +L +A++ AR 
Sbjct: 360 MQHMGCEPDRASYNIMVDAYGRAGLHSDAEAVFEEMKRLGIAPTMKSHMLLLSAYSKARD 419

Query: 216 YTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRS-KSYVL 274
            T  E  V+ + ++    +   L+ ++ LYG L +   +E+I A ++  P      +Y +
Sbjct: 420 VTKCEAIVKEMSENGVEPDTFVLNSMLNLYGRLGQFTKMEKILAEMENGPCTADISTYNI 479

Query: 275 AIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNG 334
            I  +G+   + R EEL++E++          + S I  Y +     K   + +EM  +G
Sbjct: 480 LINIYGKAGFLERIEELFVELKEKNFRPDVVTWTSRIGAYSRKKLYVKCLEVFEEMIDSG 539

Query: 335 CKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKV 374
           C P+  T + L   C     VE+    L    K +T   +
Sbjct: 540 CAPDGGTAKVLLSACSSEEQVEQVTSVLRTMHKGVTVSSL 579


>gi|356518447|ref|XP_003527890.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g27460-like [Glycine max]
          Length = 496

 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 103/457 (22%), Positives = 196/457 (42%), Gaps = 26/457 (5%)

Query: 13  AFQSWMREGFPVHRGEIFHSINRLRKLQLNKRALEVMEWVIRERPYRPKELDYSYLLEFT 72
           A Q+W+ +G  V   ++      L K +    ALEV EW+  ++ +     D++  LE  
Sbjct: 49  ALQNWVDQGNDVSPFQLRSIARTLVKSKRYHHALEVFEWIKNQKNFHMIPADHAMKLELI 108

Query: 73  IKNHGISQGEKLFCCIPKDYQNELLYNNLVIACL--------DKGVIKLSLEYMKKMRVL 124
           I+NHG+ + E+ F  +P     +        ACL        D+   K    +M K+  L
Sbjct: 109 IENHGLMEAEEYFMNLPDSAAKK-------AACLILLRGYVRDRDTSKAE-TFMLKLYEL 160

Query: 125 GHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKI--EANDHNIE 182
           G  +S   FN ++ L       + +P +++QMK +K+  +V ++++ M    E   + + 
Sbjct: 161 GLVVSPHPFNEMMKLYLVTCEYRKVPLVIQQMKRNKIPCNVLSYNLWMNACSEEEGYVVA 220

Query: 183 GLMKVYSDM-KRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVL 241
            +  V+  M     VE    S   LA A+  A     A   ++  EK ++  N      L
Sbjct: 221 AVETVFRQMLNDRNVEVGWGSLATLANAYKKAGQSKKAILVLKDAEKKLSTCNRLGHFFL 280

Query: 242 IILYGYLAKGKDLERIWATVQELPN-VRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQ 300
           I LY  L   + + R+W   + +   +   +Y+  +    ++  + +A+ ++LE +S  Q
Sbjct: 281 ITLYASLKDKEGVLRLWEASKAVRGRISCANYICILTCLVKLGDIVQAKRIFLEWESNCQ 340

Query: 301 LKATEQYNSVISVYCKNGFIDKASGL-LKEMSMNGCKPNAITYRHLALGCFKSNLVEEGF 359
                  N ++  Y +NG +++A  L L  +   GC PN  T   L  G      ++E  
Sbjct: 341 KYDIRVSNVLLGAYVRNGLMEEAESLHLHTLQKGGC-PNYKTLEILMEGYVNWQKMDEAI 399

Query: 360 KALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVY 419
             ++  + ++     R   P     L+I E   + G++  A+    ++        + +Y
Sbjct: 400 ITMKRALAMMKDCHWR---PPHGIVLAIAEYLEKDGNLEYADKYITDIHNLGLVSLS-LY 455

Query: 420 NTLIKAYVKAKINDPNLLRRMILGGARPDAETYSLLK 456
             L++ ++ A     ++L+ M       D ET S+LK
Sbjct: 456 KVLLRMHLSANKPPFHILKMMDEDKVEIDNETLSILK 492


>gi|326507912|dbj|BAJ86699.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 493

 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 87/417 (20%), Positives = 180/417 (43%), Gaps = 18/417 (4%)

Query: 1   IERLPRGEPVGSA---FQSWMREGFPVHRGEIFHSINRLRKLQLNKRALEVMEWVIRERP 57
           I ++ +G+P G+       W+R+     + ++   +  L + + N+ ALE+++W +  R 
Sbjct: 55  ISKVSQGKPPGTVAAEMDEWLRQRRRPSQLQVLAYVRELTRFKKNESALELLDW-MESRG 113

Query: 58  YRPKELDYSYLLEFTIKNHGISQGEKLFCCIPKDYQNELLYNNLVIACLDKGVIKLSLEY 117
                   +  L+   K HGI   E+ F  IP   ++   Y+ L+      G+    LE+
Sbjct: 114 ANLSPGHQAMRLDLISKVHGIQAAEEYFWSIPDISKSVKTYSCLLNCYGKHGLAYKGLEF 173

Query: 118 MKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEAN 177
            +KM+        LV+N L+IL    G+ + I +   +M+   ++     +  L++    
Sbjct: 174 YEKMKAKSIVPDKLVYNYLMILYQKAGQPEKILSTFEEMRESGISADKFAYFTLIESYIT 233

Query: 178 DHNIEGLMKVYSDMKRSEVEPNEVS-YCILATAHAVARLYTVAETYVEALEKSMTGNNWS 236
            ++++   KV +++++  V P   S Y ++A  +   +L+  AE  ++  E+ M   +  
Sbjct: 234 MNDLDAAEKVLAELQK--VAPVHWSLYTLMANNYIKLKLFGKAEVAIKKAEEGMDKADLR 291

Query: 237 TLDVLIILYGYLAKGKDLERIWATVQE-LPNVRSKSYVLAIEAFGRIAQVSRAEELWLEM 295
           +   L+ L+ +     +++R+W +++       ++SY++ ++A   I      ++++ E 
Sbjct: 292 SWYALLSLHAHCGNSTEVKRVWKSLKSTFKKCLNRSYLVMLQALSMIDDFESLQQIFQEW 351

Query: 296 QSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLV 355
           QS  +       N VI  Y   G ID+A  + +     G       + H  + C  +   
Sbjct: 352 QSSHEHYDKRIANVVIKAYLDKGMIDEAEAIRQSTMAQG-------HWHEGMVCIFAEFY 404

Query: 356 ---EEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKK 409
               +   ALE+          R   P  E     ++ + E  D   AE+  E LKK
Sbjct: 405 LDKSDVNAALEILRDAKNMVMARKWVPSKELVSRFLKHYEESNDASGAESFLECLKK 461


>gi|297734659|emb|CBI16710.3| unnamed protein product [Vitis vinifera]
          Length = 569

 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 96/420 (22%), Positives = 184/420 (43%), Gaps = 18/420 (4%)

Query: 44  RALEVMEW--VIRERPYRPKELDYSYLLEFTIKNHGISQGEKLFCCIPKD--YQNELLYN 99
           R  + + W  ++ ER   P  + ++ ++    K   + +  KLF  + +     N ++YN
Sbjct: 106 RTSDALAWFNLMIERGCNPTVVTFNTVINAFCKEGNVVEARKLFDGLKEMGFSPNAIMYN 165

Query: 100 NLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKAD 159
            L+   +    I  +    ++MR  G +   + FN L+  +   GR +    +L+ +   
Sbjct: 166 TLMNGYVKMREIDQANMLYEEMRKKGIAPDGITFNILVSGHYKYGREEDGDRLLKDISVL 225

Query: 160 KVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVA 219
            + P  S F I +        ++  M+   DM    + P+ +++  +  A++ A L   A
Sbjct: 226 GLLPDRSLFDISVSGLCWAGRLDEAMEFLMDMLEKGLSPSIIAFNSVIAAYSQAGLEDKA 285

Query: 220 -ETYVEALEKSMTGN--NWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSKSYVLAI 276
            E Y   +   +T +    S+L + + + G L +  +L  I   +++  +V + ++ + +
Sbjct: 286 FEAYKLMVHFGLTPSPSTCSSLLMGLSINGRLQEATEL--IGQMIEKGLSVNNMAFTVLL 343

Query: 277 EAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCK 336
           + F +   V  A+ LW EM+          +++ I    K G +++A  +  EM   G  
Sbjct: 344 DKFFKRGDVVGAQSLWGEMERRGIFPDVVAFSAFIDGLSKQGLVEEAYNVFLEMLRKGLI 403

Query: 337 PNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGD 396
           PN   Y  L  G  K   + E        +KL    + R   P + TT  II    ++G 
Sbjct: 404 PNNFAYNSLICGFCKCGKLNE-------ALKLEKVMRHRGLLPDIFTTNMIIGGLCKQGR 456

Query: 397 VGNAENLFEELKKANYTKYTFVYNTLIKAYVKA--KINDPNLLRRMILGGARPDAETYSL 454
           + +A N+F ++ +   +     YNTLI  Y KA   +N  NL+ RM   G+ PD  TY++
Sbjct: 457 MRSAINVFMDMHQTGLSPDIITYNTLINGYCKAFDMVNADNLVNRMYASGSNPDLTTYNI 516



 Score = 63.2 bits (152), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 42/151 (27%), Positives = 70/151 (46%), Gaps = 9/151 (5%)

Query: 307 YNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGM 366
           ++ +I  +C+ G I     LL  M    C+PNA  Y  +   C       +      L +
Sbjct: 59  FSGIILGFCRKGCIHLGESLLHLMPKFHCEPNAFAYNIVINACCIRGRTSDALAWFNLMI 118

Query: 367 KLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAY 426
           +       R   P + T  ++I  F ++G+V  A  LF+ LK+  ++    +YNTL+  Y
Sbjct: 119 E-------RGCNPTVVTFNTVINAFCKEGNVVEARKLFDGLKEMGFSPNAIMYNTLMNGY 171

Query: 427 VKAK-INDPNLL-RRMILGGARPDAETYSLL 455
           VK + I+  N+L   M   G  PD  T+++L
Sbjct: 172 VKMREIDQANMLYEEMRKKGIAPDGITFNIL 202



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 63/310 (20%), Positives = 125/310 (40%), Gaps = 10/310 (3%)

Query: 152 ILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHA 211
           IL +M+   V P  S   IL K+     +   + K++ D+ R   +P + ++  +     
Sbjct: 8   ILGRMREVGVRPSASGVAILFKLLLRVGDYGNVWKLFKDVIRRGPQPCKYTFSGIILGFC 67

Query: 212 VARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKD-LERIWATVQELPNVRSK 270
                 + E+ +  + K     N    +++I       +  D L      ++   N    
Sbjct: 68  RKGCIHLGESLLHLMPKFHCEPNAFAYNIVINACCIRGRTSDALAWFNLMIERGCNPTVV 127

Query: 271 SYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEM 330
           ++   I AF +   V  A +L+  ++ +        YN++++ Y K   ID+A+ L +EM
Sbjct: 128 TFNTVINAFCKEGNVVEARKLFDGLKEMGFSPNAIMYNTLMNGYVKMREIDQANMLYEEM 187

Query: 331 SMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEI 390
              G  P+ IT+  L  G +K    E+G + L    K I+   +       + ++S +  
Sbjct: 188 RKKGIAPDGITFNILVSGHYKYGREEDGDRLL----KDISVLGLLPDRSLFDISVSGL-- 241

Query: 391 FAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKINDPNL--LRRMILGGARPD 448
               G +  A     ++ +   +     +N++I AY +A + D      + M+  G  P 
Sbjct: 242 -CWAGRLDEAMEFLMDMLEKGLSPSIIAFNSVIAAYSQAGLEDKAFEAYKLMVHFGLTPS 300

Query: 449 AETYSLLKLA 458
             T S L + 
Sbjct: 301 PSTCSSLLMG 310


>gi|302811145|ref|XP_002987262.1| hypothetical protein SELMODRAFT_426086 [Selaginella moellendorffii]
 gi|300144897|gb|EFJ11577.1| hypothetical protein SELMODRAFT_426086 [Selaginella moellendorffii]
          Length = 564

 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 92/449 (20%), Positives = 204/449 (45%), Gaps = 34/449 (7%)

Query: 33  INRLRKLQLNKRALEVMEWVIRERPYRPKELDYSY-----LLEFTIKNHGISQGEKLFCC 87
           +N  R  + NK   + ++WV  E     K + + Y      L+   + H +++   LF  
Sbjct: 38  MNLERHQERNKVVFKALDWVANE-----KVIPFGYHETLQRLDLCSRCHHVTRTLLLFRR 92

Query: 88  IPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRK 147
           +PK +++E  Y  L+     + +++ + + M+++R +G   S   ++ ++      G   
Sbjct: 93  LPKQWRSEDAYCILLELYYKRDMLEDAEKTMQELRGIGIK-SLQPYHLMLSFYKLRGMEM 151

Query: 148 TIPNILRQMKADKVAPHVSTFHILMKI-EANDHNIEGLMKVYSDMKRSEVEPNEVSYCIL 206
               ++ ++K   +A   S + IL+   ++   ++  +  V ++M+   ++ + V    +
Sbjct: 152 RFERMVTEIKGSGLALDRSFYTILLAARDSFGGDMVAVEDVLAEMEGRGLKLDAVGCLAV 211

Query: 207 ATAHAVARLYTVAETYVEALEKSMTGNNW----STLDVLIILYGYLAKGKDLERIWATVQ 262
           A  +  + L   +E  ++ LEKS+    +    S    ++ ++G L     ++RIW +++
Sbjct: 212 AGIYLRSGLRHKSERVLQRLEKSLKSGEFKDSNSIRRRMLAMFGKLGDRDAVDRIWHSIE 271

Query: 263 ELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDK 322
              +   + ++  IEAFGR+ ++  AE++++ +           +N+ ++V  + G + +
Sbjct: 272 RSASTTVEDFIFGIEAFGRVGKMDEAEDMYMRVGC--NSCNPRLHNAFLAVLVEQGDVIR 329

Query: 323 ASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSS----- 377
           A  L++ M    C  + +TY HL        L++   KA ++    +  + +RS+     
Sbjct: 330 AVALVERMKGVRCLLSTVTY-HL--------LIKVYLKAGDVSRATLAFESLRSAFGKLE 380

Query: 378 --TPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKINDPN 435
              P  ET   ++E F   GDV  +E L ++  +  +     V+++L + Y K      N
Sbjct: 381 WPRPSSETLAVMLEFFVGIGDVQASERLVKKWMEDGFPLSAAVFHSLFRVYAKGGAGVDN 440

Query: 436 LLRRMILGGARPDAETYSLLKLAEQFQKK 464
              RM+  G  P  ET  LL+    F ++
Sbjct: 441 FPGRMLSAGVEPTRETEQLLRQISTFLRE 469


>gi|115436124|ref|NP_001042820.1| Os01g0301000 [Oryza sativa Japonica Group]
 gi|57899052|dbj|BAD87826.1| putative DNA-binding protein [Oryza sativa Japonica Group]
 gi|113532351|dbj|BAF04734.1| Os01g0301000 [Oryza sativa Japonica Group]
 gi|215694668|dbj|BAG89859.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|215706899|dbj|BAG93359.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 522

 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 92/423 (21%), Positives = 181/423 (42%), Gaps = 9/423 (2%)

Query: 10  VGSAFQSWMREGFPVHRGEIFHSINRLRKLQLNKRALEVMEWVIRERPYRPKELDYSYLL 69
           V      W+REG      ++   +  LRK + +  ALE+MEW++  +       +++  L
Sbjct: 72  VSRVMNKWVREGREARAADLAKYVKELRKYKRHAHALELMEWMVNTKGMNMSYTNHAIRL 131

Query: 70  EFTIKNHGISQGEKLFCCIPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSIS 129
           +   K  GI   E+ F  +P   +N   Y  L+       +   + +  +KM  LG S S
Sbjct: 132 DLIYKVRGIEAAEQYFAGLPDPGKNHKTYGALLNCYCSAKMEDKATDIYRKMDELGISSS 191

Query: 130 YLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYS 189
            L  N L+ L    G+ + + ++  +MK   V P   T  +LM   A  + I+ + +V  
Sbjct: 192 TLPINNLMSLYVKIGQHRKVTSLFEEMKVKNVKPDNLTCCLLMSSYAALNKIDTVGEVLK 251

Query: 190 DMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSM-TGNNWSTLDVLIILYGYL 248
           +M+  +V     +Y  LA+ +  A +   AE+ ++ LE  +         D L+ LY  +
Sbjct: 252 EMEEKKVALGWSAYSTLASLYVNANMVEEAESALKKLESLIDVQAGRQPFDFLMSLYASV 311

Query: 249 AKGKDLERIWATVQ-ELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQY 307
               ++ R+W  ++     V + SY+  ++A  ++    R ++++ + +S  +       
Sbjct: 312 GNLSEVNRVWNLIKANFQKVTNTSYLGMLQALYKLNDDDRMKQIYEDWESNYENYDARLT 371

Query: 308 NSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMK 367
           N +   + +NG   +A  L +++   G + ++ T        F  + + +G     L   
Sbjct: 372 NMMTRAHLRNGLTKEAELLWEKVKEKGAEFDSKTCE-----LFLEHYMGKGDMTSALNWV 426

Query: 368 LITTKKVRSSTPWLETTLS-IIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAY 426
              TK  R  +   +  +S  ++ F E  DV  AE     L+ +        Y +L++ Y
Sbjct: 427 ENMTKLPRKKSKLDQEKISCFLKYFEEHKDVEGAERFLNCLRTSGCIDGK-AYESLLRTY 485

Query: 427 VKA 429
           + A
Sbjct: 486 LAA 488


>gi|255542744|ref|XP_002512435.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223548396|gb|EEF49887.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 546

 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 101/376 (26%), Positives = 170/376 (45%), Gaps = 32/376 (8%)

Query: 96  LLYNNLVIACLDK-GVIKLSLEYMKKMRVLGHSISYLVFNRLI---ILNSSPGRRKTIPN 151
           L+  N+VI  L K G +  + + ++ M+V G S + + +N LI         G+      
Sbjct: 163 LISFNIVINGLCKVGKLNKAGDIIEDMKVRGVSANVITYNTLIDGYCKMGKIGKMYKADA 222

Query: 152 ILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHA 211
           IL++M+AD + P+  TF+IL+     D N+   MKV+++M R  V+PN V+Y  L   + 
Sbjct: 223 ILKEMRADGICPNEVTFNILIDGFCKDKNVSAAMKVFAEMNRQGVKPNVVTYNSL--ING 280

Query: 212 VARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQEL------- 264
           +     V E    AL   M     S L   II +  L  G    ++     EL       
Sbjct: 281 LCNNGKVNE--ATALRDQMVN---SCLKPNIITHNALLNGFCKNKMVKQAGELFDDMPKQ 335

Query: 265 ---PNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFID 321
              PNV   +Y + I+A+ +   +  A  L+  M           YN +I+  C+ G ++
Sbjct: 336 GITPNV--TTYNILIDAYCKDENMEDAFALYRIMLGKGVCPDVSTYNCLIAGLCRKGDLE 393

Query: 322 KASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWL 381
            A  L+ EM     K + ITY  L       +L  +G   ++  ++L+     +   P  
Sbjct: 394 AARNLVSEMDTKHLKADLITYNILI-----DSLCNKG--EMKKALRLLDEMCRKGLKPSQ 446

Query: 382 ETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKA-KINDPN-LLRR 439
            T  ++I+ + ++G++  A NL  +++K         YN LIK + K  K+ D N LL  
Sbjct: 447 LTYNTMIDGYCKEGNLRAALNLRSQMEKVGRLANVATYNVLIKGFCKKDKLEDANGLLNE 506

Query: 440 MILGGARPDAETYSLL 455
           M+  G  P+  TY ++
Sbjct: 507 MLEKGLIPNRMTYEIV 522



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 75/280 (26%), Positives = 119/280 (42%), Gaps = 58/280 (20%)

Query: 187 VYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYG 246
           VY +M R  +EP  +S+ I+            A   +E ++      N  T + LI  Y 
Sbjct: 150 VYKEMIRRRIEPTLISFNIVINGLCKVGKLNKAGDIIEDMKVRGVSANVITYNTLIDGYC 209

Query: 247 YLAKGKDLERIWATVQEL------PNVRSKSYVLAIEAFGRIAQVSRAEELWLEM--QSV 298
            + K   + +  A ++E+      PN    ++ + I+ F +   VS A +++ EM  Q V
Sbjct: 210 KMGKIGKMYKADAILKEMRADGICPN--EVTFNILIDGFCKDKNVSAAMKVFAEMNRQGV 267

Query: 299 KQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGC-KPNAITYRHLALGCFKSNLVEE 357
           K    T  YNS+I+  C NG +++A+ L  +M +N C KPN IT+  L  G  K+ +V++
Sbjct: 268 KPNVVT--YNSLINGLCNNGKVNEATALRDQM-VNSCLKPNIITHNALLNGFCKNKMVKQ 324

Query: 358 GFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTF 417
                                                     A  LF+++ K   T    
Sbjct: 325 ------------------------------------------AGELFDDMPKQGITPNVT 342

Query: 418 VYNTLIKAYVKAK-INDPNLLRRMILG-GARPDAETYSLL 455
            YN LI AY K + + D   L R++LG G  PD  TY+ L
Sbjct: 343 TYNILIDAYCKDENMEDAFALYRIMLGKGVCPDVSTYNCL 382



 Score = 55.5 bits (132), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 71/274 (25%), Positives = 123/274 (44%), Gaps = 19/274 (6%)

Query: 94  NELLYNNLVIA-CLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNI 152
           NE+ +N L+   C DK V   +++   +M   G   + + +N LI    + G+      +
Sbjct: 235 NEVTFNILIDGFCKDKNV-SAAMKVFAEMNRQGVKPNVVTYNSLINGLCNNGKVNEATAL 293

Query: 153 LRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAV 212
             QM    + P++ T + L+     +  ++   +++ DM +  + PN  +Y IL  A+  
Sbjct: 294 RDQMVNSCLKPNIITHNALLNGFCKNKMVKQAGELFDDMPKQGITPNVTTYNILIDAY-- 351

Query: 213 ARLYTVAETYVEALEKSMTGN----NWSTLDVLIILYGYLAKGKDLERIWATVQELPNVR 268
            +   + + +  AL + M G     + ST + LI   G   KG DLE     V E+    
Sbjct: 352 CKDENMEDAF--ALYRIMLGKGVCPDVSTYNCLIA--GLCRKG-DLEAARNLVSEMDTKH 406

Query: 269 SK----SYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATE-QYNSVISVYCKNGFIDKA 323
            K    +Y + I++     ++ +A  L  EM   K LK ++  YN++I  YCK G +  A
Sbjct: 407 LKADLITYNILIDSLCNKGEMKKALRLLDEM-CRKGLKPSQLTYNTMIDGYCKEGNLRAA 465

Query: 324 SGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEE 357
             L  +M   G   N  TY  L  G  K + +E+
Sbjct: 466 LNLRSQMEKVGRLANVATYNVLIKGFCKKDKLED 499



 Score = 42.4 bits (98), Expect = 0.56,   Method: Compositional matrix adjust.
 Identities = 64/304 (21%), Positives = 119/304 (39%), Gaps = 78/304 (25%)

Query: 59  RPKELDYSYLLEFTIKNHGISQGEKLFCCIPKD--YQNELLYNNLVIA-CLDKGVIKLSL 115
           +P  + ++ LL    KN  + Q  +LF  +PK     N   YN L+ A C D+  ++ + 
Sbjct: 303 KPNIITHNALLNGFCKNKMVKQAGELFDDMPKQGITPNVTTYNILIDAYCKDEN-MEDAF 361

Query: 116 EYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIE 175
              + M   G       +N LI      G  +   N++ +M    +   + T++IL+   
Sbjct: 362 ALYRIMLGKGVCPDVSTYNCLIAGLCRKGDLEAARNLVSEMDTKHLKADLITYNILIDSL 421

Query: 176 ANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNW 235
            N   ++  +++  +M R  ++P++++Y                 T ++           
Sbjct: 422 CNKGEMKKALRLLDEMCRKGLKPSQLTY----------------NTMID----------- 454

Query: 236 STLDVLIILYGYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEM 295
                     GY  +G         ++   N+RS+     +E  GR+A V+         
Sbjct: 455 ----------GYCKEG--------NLRAALNLRSQ-----MEKVGRLANVA--------- 482

Query: 296 QSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLV 355
                      YN +I  +CK   ++ A+GLL EM   G  PN +TY  +        ++
Sbjct: 483 ----------TYNVLIKGFCKKDKLEDANGLLNEMLEKGLIPNRMTYEIVT-----EEMM 527

Query: 356 EEGF 359
           E+GF
Sbjct: 528 EKGF 531


>gi|125575304|gb|EAZ16588.1| hypothetical protein OsJ_32060 [Oryza sativa Japonica Group]
          Length = 475

 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 100/413 (24%), Positives = 181/413 (43%), Gaps = 19/413 (4%)

Query: 51  WVIRERPYRPKELDYSYLLEFTIKNHGISQGEKLFCCIPKDYQNELLYNNLVIACLDKGV 110
           W+   R       D +Y LE   K HG+ +  + F  +P   +    Y +L+    +   
Sbjct: 69  WMTERRHLHLSPGDVAYRLELISKVHGLDKAVEYFDAVPNQLRELQCYGSLLRCYAEAER 128

Query: 111 IKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHI 170
           ++ + E  + MR +G + SY  +N ++ L S  G+ + + ++ + M+   + P + T   
Sbjct: 129 VEKAEELFENMRGMGMANSY-AYNAMMNLYSQIGQVERVDSMYKAMEEGGIVPDIFTIDN 187

Query: 171 LMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSM 230
           L+   A+  ++E + KV      + +     S+ I+      A +   A    +  EK +
Sbjct: 188 LVSAYADVEDVEAIEKVLEKASCNNLMSWH-SFAIVGKVFMKAGMQERALQAFQESEKRI 246

Query: 231 TG--NNWSTLDVLIILYGYLAKGKDLERIWATVQ-ELPNVRSKS-YVLAIEAFGRIAQVS 286
           T   +       L+ +Y  L    +++RIW   + ++P     + Y+  I    ++  + 
Sbjct: 247 TARKDGRVAYGFLLTMYADLQMDSEVDRIWDVYRSKVPASACNTMYMCRISVLLKMNDIV 306

Query: 287 RAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLA 346
            AE+ + E +S      +   N +++ YCK G ++KA  L+ +    G    + T+  LA
Sbjct: 307 GAEKAYEEWESKHVYHDSRLINILLTAYCKEGLMEKAEALVDQFIKKGRTLFSNTWYKLA 366

Query: 347 LGCFKSNLVEEGFKALELGMKLITTKKVRSSTPW---LETTLSIIEIFAEKGDVGNAENL 403
            G FK   V    KA +L  K + +    +S  W   L   L  I  FAE+ +V  AE +
Sbjct: 367 GGYFKVGQVS---KAADLTKKALAS----ASNEWKPDLANVLMSINYFAEQKNVEAAEEM 419

Query: 404 FEELKK-ANYTKYTFVYNTLIKAYVKAKINDPNLLRRMILGGARPDAETYSLL 455
              L++    T+   VY+ L+K YV A     +LL RM   G   D ET  +L
Sbjct: 420 ASLLQRLVPLTRD--VYHGLLKTYVNAGEPASDLLDRMKKDGIEADEETDKIL 470


>gi|242057165|ref|XP_002457728.1| hypothetical protein SORBIDRAFT_03g012450 [Sorghum bicolor]
 gi|241929703|gb|EES02848.1| hypothetical protein SORBIDRAFT_03g012450 [Sorghum bicolor]
          Length = 530

 Score = 93.2 bits (230), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 75/335 (22%), Positives = 149/335 (44%), Gaps = 4/335 (1%)

Query: 10  VGSAFQSWMREGFPVHRGEIFHSINRLRKLQLNKRALEVMEWVIRERPYRPKELDYSYLL 69
           V      W+REG      E+   +  LRK + +  ALEVM+W++  R       +++  L
Sbjct: 81  VSRVLNKWVREGGAPRSEELVKHVKELRKYKRHAHALEVMDWMVNARGMNMSITNHAIRL 140

Query: 70  EFTIKNHGISQGEKLFCCIPKDYQNELLYNNLVIACLDKGVIKLSLEYM-KKMRVLGHSI 128
           +   K  G+   E  F  +P   +N   Y  L ++C     ++    Y+ ++M  LG   
Sbjct: 141 DLIYKVRGLEAAENYFANLPDPAKNHRTYGAL-LSCYCSAKMEEKATYLYRQMDELGFWS 199

Query: 129 SYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVY 188
             L  N L+ L     + + + ++  +MK   + P   T  ILM   A  + I+ + ++ 
Sbjct: 200 GTLPINNLMSLYMKLDQHRKVDSLFEEMKVKNIKPDSLTCCILMTSYAASNKIDAIEELL 259

Query: 189 SDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNW-STLDVLIILYGY 247
            +M   +V     +Y  LA+ +  A     AE+ ++ LE  +   +     D L+ LY  
Sbjct: 260 KEMVEKDVSLGWSAYSTLASIYVNAGQVEKAESALKKLEGLIGAEDGRQPFDFLMSLYAS 319

Query: 248 LAKGKDLERIWATVQ-ELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQ 306
           L    ++ R+W  ++ +   V + SY+  + A  ++  + R +++++E +S  Q      
Sbjct: 320 LGNLSEINRVWDVIKAKFSTVTNISYLGMLHALYKLNDIDRMKQIYMEWESNYQTYDVRL 379

Query: 307 YNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAIT 341
            N +I  + + G  ++A  L ++    G + ++ T
Sbjct: 380 TNMMIRGHLRLGMSEEAETLREKAKEKGVEFDSKT 414


>gi|357442727|ref|XP_003591641.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|92882355|gb|ABE86686.1| Tetratricopeptide-like helical [Medicago truncatula]
 gi|355480689|gb|AES61892.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 827

 Score = 93.2 bits (230), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 94/389 (24%), Positives = 169/389 (43%), Gaps = 38/389 (9%)

Query: 98  YNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMK 157
           YN L+      G  K + E   KM   G   + + FN +I +  + GR + + ++LR+M 
Sbjct: 288 YNTLIDTYGKAGQHKEASETFAKMLKQGIPPTTVTFNTMIHICGNHGRLEEVSSLLRKMG 347

Query: 158 ADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYT 217
             + +P   T++ L+ +    ++I+   K +  MK S +EP+ VSY  L  A+++ ++  
Sbjct: 348 ELRCSPDTRTYNTLISLHTKHNDIDMATKYFKRMKESYLEPDPVSYRTLLYAYSIRKMVC 407

Query: 218 VAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIW-ATVQELPNVRSKSYVLAI 276
            AE  +  +++     +  T   L  +Y   A   +   +W        N+ S+ Y   I
Sbjct: 408 EAEELITEMDEKGLEIDQFTQSALTRMY-IEAGMPERSLLWFQRFHRAGNMTSECYAANI 466

Query: 277 EAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCK 336
           +A+G    +S AE+++L  Q  K L A E +N +I  Y    + DKA  L   M  +G  
Sbjct: 467 DAYGERGHISEAEKVFLWCQERKNLSAVE-FNVMIKAYGVGKYYDKACQLFDSMDKHGVA 525

Query: 337 PNAITYRHLA---LGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAE 393
            +  +Y  L        + ++ +   K +++   L+T     +  P+     ++I  F +
Sbjct: 526 ADRCSYSSLIQVLASADQPHIAKPYLKRMQVA-GLVT-----NCIPY----CAVISCFVK 575

Query: 394 KGDVGNAENLFEELKKANYTKYTFVYNTLIKAY-----VKAKINDPNLLRRMIL------ 442
            G +  AE +++E+          VY  LI A      VK  I+  N ++R  L      
Sbjct: 576 LGQLEMAEGVYKEMIGHGVKPDIIVYGVLINALYGAGRVKEAISYANEIKRAGLPGNTVI 635

Query: 443 -----------GGARPDAETYSLLKLAEQ 460
                      G  R   ETY LL+ +E+
Sbjct: 636 YNSLIKLYTKVGNLREAQETYRLLQSSEE 664



 Score = 45.4 bits (106), Expect = 0.064,   Method: Compositional matrix adjust.
 Identities = 49/204 (24%), Positives = 82/204 (40%), Gaps = 22/204 (10%)

Query: 272 YVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMS 331
           Y + I   GR  + +  E LW +M +   +     Y ++I VY K G  + A   L+ M 
Sbjct: 160 YNIMIRILGRAREWALLEGLWNQMNARGIVATNSTYGTLIDVYSKGGLREDALFWLETML 219

Query: 332 MNGCKPNAITY-----RHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTP------- 379
            +G +P+ +T       +   G F+    EE F+   LG  L  + K     P       
Sbjct: 220 EHGIEPDEVTMVIVVQLYKKAGEFQK--AEEFFRKWSLGEPLRPSNKHMMDAPESVERAL 277

Query: 380 ------WLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIK-AYVKAKIN 432
                    T  ++I+ + + G    A   F ++ K      T  +NT+I       ++ 
Sbjct: 278 FSNASFGSHTYNTLIDTYGKAGQHKEASETFAKMLKQGIPPTTVTFNTMIHICGNHGRLE 337

Query: 433 D-PNLLRRMILGGARPDAETYSLL 455
           +  +LLR+M      PD  TY+ L
Sbjct: 338 EVSSLLRKMGELRCSPDTRTYNTL 361



 Score = 44.3 bits (103), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 57/285 (20%), Positives = 114/285 (40%), Gaps = 22/285 (7%)

Query: 155 QMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVAR 214
           QM A  +    ST+  L+ + +     E  +     M    +EP+EV+  I+   +  A 
Sbjct: 182 QMNARGIVATNSTYGTLIDVYSKGGLREDALFWLETMLEHGIEPDEVTMVIVVQLYKKAG 241

Query: 215 LYTVAETYVE--ALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSKSY 272
            +  AE +    +L + +  +N   +D               E +   +    +  S +Y
Sbjct: 242 EFQKAEEFFRKWSLGEPLRPSNKHMMDAP-------------ESVERALFSNASFGSHTY 288

Query: 273 VLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSM 332
              I+ +G+  Q   A E + +M        T  +N++I +   +G +++ S LL++M  
Sbjct: 289 NTLIDTYGKAGQHKEASETFAKMLKQGIPPTTVTFNTMIHICGNHGRLEEVSSLLRKMGE 348

Query: 333 NGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFA 392
             C P+  TY  L     K N        +++  K     K     P   +  +++  ++
Sbjct: 349 LRCSPDTRTYNTLISLHTKHN-------DIDMATKYFKRMKESYLEPDPVSYRTLLYAYS 401

Query: 393 EKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKINDPNLL 437
            +  V  AE L  E+ +       F  + L + Y++A + + +LL
Sbjct: 402 IRKMVCEAEELITEMDEKGLEIDQFTQSALTRMYIEAGMPERSLL 446



 Score = 42.7 bits (99), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 54/280 (19%), Positives = 122/280 (43%), Gaps = 15/280 (5%)

Query: 117 YMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEA 176
           Y+K+M+V G   + + +  +I      G+ +    + ++M    V P +  + +L+    
Sbjct: 550 YLKRMQVAGLVTNCIPYCAVISCFVKLGQLEMAEGVYKEMIGHGVKPDIIVYGVLINALY 609

Query: 177 NDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHA-VARLYTVAETYVEALEKSMTGNNW 235
               ++  +   +++KR+ +  N V Y  L   +  V  L    ETY   L+ S  G   
Sbjct: 610 GAGRVKEAISYANEIKRAGLPGNTVIYNSLIKLYTKVGNLREAQETY-RLLQSSEEGPAV 668

Query: 236 STLDVLIILYGYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEM 295
            + + +I LY   +  +  + I+ T+++       S+ + +  +  I +   A ++  +M
Sbjct: 669 YSSNCMIGLYTKQSMVEQAKEIFETLKKNGTANEFSFAMMLCLYKNIERFDVAIQIANQM 728

Query: 296 QSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEM-----SMNGCKPNAITYRHLALGCF 350
           + ++ L  +  YN V+ +Y   G   +A  + K+M      ++ C   ++    L  G  
Sbjct: 729 RKLELLTDSLSYNIVLDLYATAGRPKEAIEIFKDMVTASIQLDDCSLRSLRTLLLRYGAS 788

Query: 351 KSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEI 390
           +     +G   L++ MK   +  +++   W+    S++EI
Sbjct: 789 R-----QGVDNLQVMMKKDASHGLQA---WMSALTSVLEI 820


>gi|356547012|ref|XP_003541912.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At2g20710, mitochondrial-like [Glycine max]
          Length = 482

 Score = 93.2 bits (230), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 92/399 (23%), Positives = 177/399 (44%), Gaps = 16/399 (4%)

Query: 7   GEPVGSA---FQSWMREGFPVHRGEIFHSINRLRKLQLNKRALEVMEWVIRERPYRPKEL 63
           G+P+ S       W+ EG  V + ++     RL + +    AL+V+EW+  ER Y     
Sbjct: 32  GDPLSSVSPILNQWVEEGREVTKLQLEDLAYRLTQSRRFTHALQVLEWMSNERNYELSPG 91

Query: 64  DYSYLLEFTIKNHGISQGEKLFCCIPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMRV 123
             +  +    K HG+ Q E+ F  IP D     +Y  L+    +   ++ +   MK ++ 
Sbjct: 92  SIAKQINLISKVHGLEQAERYFRGIPDDKIEFKIYAALLRCYAEHKSVEEAEAVMKXIKE 151

Query: 124 LGHSISYL-VFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIE 182
           L H ++     N ++ L +  G+ + +  ++++MK   +  + ST+ I +       +I+
Sbjct: 152 L-HPVNITPCCNMMLELYAKKGKYEKLDRLMQEMKEKDIC-NASTYTIRLNAYVVVTDIK 209

Query: 183 GLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKS---MTGNNWS-TL 238
           G+ K+   M+   V   +  Y  +  A+   R++   E   E L+KS     GN      
Sbjct: 210 GMEKLLMQMEADPVATVDW-YTYMTAANGYRRVHNF-EKVAEMLKKSEHLARGNTRRLAF 267

Query: 239 DVLIILYGYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSV 298
           + +  +Y  +    ++ R+W     L    + SY+  + +  ++ ++  AE++  E +S 
Sbjct: 268 ESIQTMYAIIGNKDEVYRLWNMCTSLKKPNNSSYIRMLSSLAKLDEIDGAEKILEEWESK 327

Query: 299 KQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEG 358
                    N +IS YCK G  DKA   ++ +   G + +  T+  LA G    N +E+ 
Sbjct: 328 YANFDVRIPNLMISAYCKWGQFDKAEAYIRRLLDGGKQLDGRTWDRLACGYKAGNDMEKA 387

Query: 359 FKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDV 397
            +A    MK   +K +    P   T ++ ++   EKGD+
Sbjct: 388 VQA----MKKAVSKNLGGRRPDPFTLVACVKYLKEKGDL 422


>gi|224135699|ref|XP_002322139.1| predicted protein [Populus trichocarpa]
 gi|222869135|gb|EEF06266.1| predicted protein [Populus trichocarpa]
          Length = 866

 Score = 92.8 bits (229), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 100/437 (22%), Positives = 188/437 (43%), Gaps = 73/437 (16%)

Query: 26  RGEIFHSINRLR-KLQLNKRALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQGEKL 84
           RG I   ++  + KL LN  AL   E+  R    R   L                  ++ 
Sbjct: 91  RGSIARCLDVFKNKLSLNDFALVFKEFAQRGDWQRSLRL--------------FKHMQRQ 136

Query: 85  FCCIPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNS--S 142
             C P    NE +Y  ++     +G+++   +  ++M    H +S  VF+   ++NS   
Sbjct: 137 IWCKP----NEHIYTIMISLLGREGLLEKCSDIFEEMGA--HGVSRSVFSYTALINSYGR 190

Query: 143 PGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDH-NIEGLMKVYSDMKRSEVEPNEV 201
            G+ +    +L +MK ++V+P + T++ ++   A    + EGL+ ++++M+   ++P+ V
Sbjct: 191 NGKYEVSLELLERMKKERVSPSILTYNTVINSCARGGLDWEGLLGLFAEMRHEGIQPDIV 250

Query: 202 SYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATV 261
           +Y  L  A +   L                                   G + E ++ T+
Sbjct: 251 TYNTLLCACSNRGL-----------------------------------GDEAEMVFRTM 275

Query: 262 QE---LPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNG 318
            E   +P++ + +Y+  ++ FG++ ++ +  EL  EM S   +     YN ++  Y + G
Sbjct: 276 NEGGVVPDITTYTYL--VDTFGKLNRLDKVSELLKEMASTGNVPEISSYNVLLEAYARIG 333

Query: 319 FIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSST 378
            I+ A+G+ + M   GC PNA TY  L LG +  +   +  + L L MK+  T+      
Sbjct: 334 NIEDATGVFRLMQEAGCVPNAETYSIL-LGLYGKHGRYDEVRELFLEMKVSNTE------ 386

Query: 379 PWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKINDP--NL 436
           P   T  ++I++F E G       LF ++ + N       Y  LI A  K  ++D    +
Sbjct: 387 PDAATYNTLIDVFGEGGYFKEVVTLFHDMAEENVEPNMETYEGLIFACGKGGLHDDAKKI 446

Query: 437 LRRMILGGARPDAETYS 453
           L  M   G  P ++ Y+
Sbjct: 447 LLHMSEKGMIPSSKAYT 463



 Score = 65.9 bits (159), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 79/364 (21%), Positives = 149/364 (40%), Gaps = 35/364 (9%)

Query: 98  YNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMK 157
           YN L+ AC ++G+   +    + M   G       +  L+       R   +  +L++M 
Sbjct: 252 YNTLLCACSNRGLGDEAEMVFRTMNEGGVVPDITTYTYLVDTFGKLNRLDKVSELLKEMA 311

Query: 158 ADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAV-ARLY 216
           +    P +S++++L++  A   NIE    V+  M+ +   PN  +Y IL   +    R  
Sbjct: 312 STGNVPEISSYNVLLEAYARIGNIEDATGVFRLMQEAGCVPNAETYSILLGLYGKHGRYD 371

Query: 217 TVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQEL---PNVRSKSYV 273
            V E ++E ++ S T  + +T + LI ++G     K++  ++  + E    PN+  ++Y 
Sbjct: 372 EVRELFLE-MKVSNTEPDAATYNTLIDVFGEGGYFKEVVTLFHDMAEENVEPNM--ETYE 428

Query: 274 LAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMN 333
             I A G+      A+++ L M     + +++ Y  VI  Y +    ++A   L  M+  
Sbjct: 429 GLIFACGKGGLHDDAKKILLHMSEKGMIPSSKAYTGVIEAYGQAAMYEEALVTLNTMNEM 488

Query: 334 GCKPNAITYRHLAL-----GCFKS--------------------NLVEEGFKA---LELG 365
           G KP   TY  L       G +K                     N V EGF+     E  
Sbjct: 489 GSKPTIETYNTLIYMFARGGLYKETEAILLKMGDFGVARERDSFNGVIEGFRQGGQFEEA 548

Query: 366 MKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKA 425
           +K     +     P   T  +++ ++   G V  +   F+E+K +        Y  ++  
Sbjct: 549 IKAYVEMEKSRLVPDERTLEAVLSVYCIAGLVDESVEQFQEIKASGILPNVMCYCMMLAV 608

Query: 426 YVKA 429
           Y K+
Sbjct: 609 YAKS 612



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 79/364 (21%), Positives = 142/364 (39%), Gaps = 42/364 (11%)

Query: 98  YNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMK 157
           YN L+ A    G I+ +    + M+  G   +   ++ L+ L    GR   +  +  +MK
Sbjct: 322 YNVLLEAYARIGNIEDATGVFRLMQEAGCVPNAETYSILLGLYGKHGRYDEVRELFLEMK 381

Query: 158 ADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSY------CILATAH- 210
                P  +T++ L+ +       + ++ ++ DM    VEPN  +Y      C     H 
Sbjct: 382 VSNTEPDAATYNTLIDVFGEGGYFKEVVTLFHDMAEENVEPNMETYEGLIFACGKGGLHD 441

Query: 211 ----------------------AVARLYTVAETYVEALEKSMTGNNWS------TLDVLI 242
                                  V   Y  A  Y EAL    T N         T + LI
Sbjct: 442 DAKKILLHMSEKGMIPSSKAYTGVIEAYGQAAMYEEALVTLNTMNEMGSKPTIETYNTLI 501

Query: 243 ILYGYLAKGKDLERIWATVQELPNVRSK-SYVLAIEAFGRIAQVSRAEELWLEMQSVKQL 301
            ++      K+ E I   + +    R + S+   IE F +  Q   A + ++EM+  + +
Sbjct: 502 YMFARGGLYKETEAILLKMGDFGVARERDSFNGVIEGFRQGGQFEEAIKAYVEMEKSRLV 561

Query: 302 KATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKA 361
                  +V+SVYC  G +D++    +E+  +G  PN + Y  +     KS+   E ++ 
Sbjct: 562 PDERTLEAVLSVYCIAGLVDESVEQFQEIKASGILPNVMCYCMMLAVYAKSDRWNEAYEL 621

Query: 362 LELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNT 421
           L+   +++T    R+S         I   F +  +    E +F++L           YNT
Sbjct: 622 LD---EMLTN---RASNIHQVIGQMIKGDFDDDSNWQMVEYVFDKLNSEGCGLGMRFYNT 675

Query: 422 LIKA 425
           L++A
Sbjct: 676 LLEA 679



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 51/189 (26%), Positives = 82/189 (43%), Gaps = 12/189 (6%)

Query: 271 SYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKAS--GLLK 328
           SY   I ++GR  +   + EL   M+  +   +   YN+VI+  C  G +D     GL  
Sbjct: 180 SYTALINSYGRNGKYEVSLELLERMKKERVSPSILTYNTVINS-CARGGLDWEGLLGLFA 238

Query: 329 EMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSII 388
           EM   G +P+ +TY  L   C    L +E     E+  + +    V    P + T   ++
Sbjct: 239 EMRHEGIQPDIVTYNTLLCACSNRGLGDEA----EMVFRTMNEGGV---VPDITTYTYLV 291

Query: 389 EIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVK-AKINDP-NLLRRMILGGAR 446
           + F +   +     L +E+           YN L++AY +   I D   + R M   G  
Sbjct: 292 DTFGKLNRLDKVSELLKEMASTGNVPEISSYNVLLEAYARIGNIEDATGVFRLMQEAGCV 351

Query: 447 PDAETYSLL 455
           P+AETYS+L
Sbjct: 352 PNAETYSIL 360


>gi|359489321|ref|XP_002269223.2| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39710-like [Vitis vinifera]
          Length = 889

 Score = 92.8 bits (229), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 96/420 (22%), Positives = 184/420 (43%), Gaps = 18/420 (4%)

Query: 44  RALEVMEW--VIRERPYRPKELDYSYLLEFTIKNHGISQGEKLFCCIPKD--YQNELLYN 99
           R  + + W  ++ ER   P  + ++ ++    K   + +  KLF  + +     N ++YN
Sbjct: 316 RTSDALAWFNLMIERGCNPTVVTFNTVINAFCKEGNVVEARKLFDGLKEMGFSPNAIMYN 375

Query: 100 NLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKAD 159
            L+   +    I  +    ++MR  G +   + FN L+  +   GR +    +L+ +   
Sbjct: 376 TLMNGYVKMREIDQANMLYEEMRKKGIAPDGITFNILVSGHYKYGREEDGDRLLKDISVL 435

Query: 160 KVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVA 219
            + P  S F I +        ++  M+   DM    + P+ +++  +  A++ A L   A
Sbjct: 436 GLLPDRSLFDISVSGLCWAGRLDEAMEFLMDMLEKGLSPSIIAFNSVIAAYSQAGLEDKA 495

Query: 220 -ETYVEALEKSMTGN--NWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSKSYVLAI 276
            E Y   +   +T +    S+L + + + G L +  +L  I   +++  +V + ++ + +
Sbjct: 496 FEAYKLMVHFGLTPSPSTCSSLLMGLSINGRLQEATEL--IGQMIEKGLSVNNMAFTVLL 553

Query: 277 EAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCK 336
           + F +   V  A+ LW EM+          +++ I    K G +++A  +  EM   G  
Sbjct: 554 DKFFKRGDVVGAQSLWGEMERRGIFPDVVAFSAFIDGLSKQGLVEEAYNVFLEMLRKGLI 613

Query: 337 PNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGD 396
           PN   Y  L  G  K   + E        +KL    + R   P + TT  II    ++G 
Sbjct: 614 PNNFAYNSLICGFCKCGKLNE-------ALKLEKVMRHRGLLPDIFTTNMIIGGLCKQGR 666

Query: 397 VGNAENLFEELKKANYTKYTFVYNTLIKAYVKA--KINDPNLLRRMILGGARPDAETYSL 454
           + +A N+F ++ +   +     YNTLI  Y KA   +N  NL+ RM   G+ PD  TY++
Sbjct: 667 MRSAINVFMDMHQTGLSPDIITYNTLINGYCKAFDMVNADNLVNRMYASGSNPDLTTYNI 726



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 42/151 (27%), Positives = 70/151 (46%), Gaps = 9/151 (5%)

Query: 307 YNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGM 366
           ++ +I  +C+ G I     LL  M    C+PNA  Y  +   C       +      L +
Sbjct: 269 FSGIILGFCRKGCIHLGESLLHLMPKFHCEPNAFAYNIVINACCIRGRTSDALAWFNLMI 328

Query: 367 KLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAY 426
           +       R   P + T  ++I  F ++G+V  A  LF+ LK+  ++    +YNTL+  Y
Sbjct: 329 E-------RGCNPTVVTFNTVINAFCKEGNVVEARKLFDGLKEMGFSPNAIMYNTLMNGY 381

Query: 427 VKAK-INDPNLL-RRMILGGARPDAETYSLL 455
           VK + I+  N+L   M   G  PD  T+++L
Sbjct: 382 VKMREIDQANMLYEEMRKKGIAPDGITFNIL 412



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 63/310 (20%), Positives = 125/310 (40%), Gaps = 10/310 (3%)

Query: 152 ILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHA 211
           IL +M+   V P  S   IL K+     +   + K++ D+ R   +P + ++  +     
Sbjct: 218 ILGRMREVGVRPSASGVAILFKLLLRVGDYGNVWKLFKDVIRRGPQPCKYTFSGIILGFC 277

Query: 212 VARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKD-LERIWATVQELPNVRSK 270
                 + E+ +  + K     N    +++I       +  D L      ++   N    
Sbjct: 278 RKGCIHLGESLLHLMPKFHCEPNAFAYNIVINACCIRGRTSDALAWFNLMIERGCNPTVV 337

Query: 271 SYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEM 330
           ++   I AF +   V  A +L+  ++ +        YN++++ Y K   ID+A+ L +EM
Sbjct: 338 TFNTVINAFCKEGNVVEARKLFDGLKEMGFSPNAIMYNTLMNGYVKMREIDQANMLYEEM 397

Query: 331 SMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEI 390
              G  P+ IT+  L  G +K    E+G + L    K I+   +       + ++S +  
Sbjct: 398 RKKGIAPDGITFNILVSGHYKYGREEDGDRLL----KDISVLGLLPDRSLFDISVSGL-- 451

Query: 391 FAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKINDPNL--LRRMILGGARPD 448
               G +  A     ++ +   +     +N++I AY +A + D      + M+  G  P 
Sbjct: 452 -CWAGRLDEAMEFLMDMLEKGLSPSIIAFNSVIAAYSQAGLEDKAFEAYKLMVHFGLTPS 510

Query: 449 AETYSLLKLA 458
             T S L + 
Sbjct: 511 PSTCSSLLMG 520


>gi|168055632|ref|XP_001779828.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162668740|gb|EDQ55341.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 730

 Score = 92.4 bits (228), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 98/427 (22%), Positives = 178/427 (41%), Gaps = 47/427 (11%)

Query: 37  RKLQLNKRALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQGEKLFCCIPKD-YQNE 95
           R+ Q NK ALEV  W+ +   +RP  +  + +L    +   ++   +LF  + ++ Y  +
Sbjct: 58  REGQWNK-ALEVFNWMRQSVNFRPDGVTIAVMLRILGRESQLTTVSRLFKSLREEGYPLD 116

Query: 96  LL-YNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRR-KTIPNIL 153
           +  Y +L+ A       K +L + ++M+  G   S + +N +I L    GR  + I  + 
Sbjct: 117 VYAYTSLISALSRNRKFKEALGFFEQMKEAGPQPSLVTYNVIIDLYGKKGRSWENILELF 176

Query: 154 RQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVA 213
            +MKA  + P   T++  +   A+    E   ++++ MK S   P+ V+Y  L   +  A
Sbjct: 177 EEMKAQGIQPDEYTYNTAITACASGSLCEEATELFTQMKSSNCTPDRVTYNALLDVYGKA 236

Query: 214 RLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSKSYV 273
             Y  A   ++ +E +                                  LPN+ + + +
Sbjct: 237 GWYNEAANVLKEMESAGC--------------------------------LPNIVTYNEL 264

Query: 274 LAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMN 333
           L+  AFGR    + A E+   M S         Y S++S Y + G +++A  +  +M  +
Sbjct: 265 LS--AFGRAGLCNAAAEMKDSMVSKGIEPDVFTYTSLLSAYSRAGKVEQAMEIYNQMRTS 322

Query: 334 GCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAE 393
            C PN+ T+  L +G    N      K     M +    +     P + T  S++  F +
Sbjct: 323 NCTPNSFTFNAL-IGMHGKN------KNFSEMMVIFEDMQACGVEPDIVTWNSLLGAFGK 375

Query: 394 KGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKINDPNL--LRRMILGGARPDAET 451
            G       +F  +KKA +      +N LI+AY +   +D  L     M+  G  PD  T
Sbjct: 376 NGMYSEVLKVFRGMKKAGFEPDKATFNILIEAYGRCGSSDQALSIYDGMLQAGCTPDLAT 435

Query: 452 YSLLKLA 458
           ++ L  A
Sbjct: 436 FNTLLAA 442



 Score = 90.9 bits (224), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 87/401 (21%), Positives = 168/401 (41%), Gaps = 55/401 (13%)

Query: 98  YNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMK 157
           Y +L+ A    G ++ ++E   +MR    + +   FN LI ++        +  I   M+
Sbjct: 296 YTSLLSAYSRAGKVEQAMEIYNQMRTSNCTPNSFTFNALIGMHGKNKNFSEMMVIFEDMQ 355

Query: 158 ADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYT 217
           A  V P + T++ L+     +     ++KV+  MK++  EP++ ++ IL  A+       
Sbjct: 356 ACGVEPDIVTWNSLLGAFGKNGMYSEVLKVFRGMKKAGFEPDKATFNILIEAYGRCGSSD 415

Query: 218 VAETYVEALEKSMTGNNWSTLDVLI---------------------------------IL 244
            A +  + + ++    + +T + L+                                 +L
Sbjct: 416 QALSIYDGMLQAGCTPDLATFNTLLAALAREGRWEHAELILDELNRSSYKPNDIAYASML 475

Query: 245 YGYLAKGKDLERIWATVQELPNVRS-------KSYVLAIEAFGRIAQVSRAEELWLEMQS 297
           + Y A G +LE++   V  L  +         K++VL    + + + V  AE+ +L M+ 
Sbjct: 476 HAY-ANGGELEKLKEMVDTLHTIYVPFTKILLKTFVLV---YSKCSLVDEAEDAFLAMRH 531

Query: 298 VKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEE 357
              L  T  +N++IS+Y K G +DKA+     +   G +P+ +TY      C       E
Sbjct: 532 HGYLSDTSTFNAMISMYGKKGMMDKATDTFALLRSTGLEPDVVTYN-----CLMGMYGRE 586

Query: 358 G-FKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYT 416
           G ++  E  ++          TP L +  ++I  +++ G + +A  +F E+        +
Sbjct: 587 GMYRKCEATLRECMAA---GQTPDLVSYNTVIFSYSKHGQLSSATRIFHEMVSNGIQPDS 643

Query: 417 FVYNTLIKAYVKAKINDPNL--LRRMILGGARPDAETYSLL 455
           F YNT +  YV   +    L  ++ M   G +PD  TY  L
Sbjct: 644 FTYNTFVGCYVNGGMFPEALSVVKHMHKTGCKPDEVTYRTL 684



 Score = 69.3 bits (168), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 79/375 (21%), Positives = 146/375 (38%), Gaps = 55/375 (14%)

Query: 87  CIPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRR 146
           C+P    N + YN L+ A    G+   + E    M   G       +  L+   S  G+ 
Sbjct: 254 CLP----NIVTYNELLSAFGRAGLCNAAAEMKDSMVSKGIEPDVFTYTSLLSAYSRAGKV 309

Query: 147 KTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCIL 206
           +    I  QM+     P+  TF+ L+ +   + N   +M ++ DM+   VEP+ V++  L
Sbjct: 310 EQAMEIYNQMRTSNCTPNSFTFNALIGMHGKNKNFSEMMVIFEDMQACGVEPDIVTWNSL 369

Query: 207 ATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPN 266
             A     +Y+                     +VL +  G    G + ++          
Sbjct: 370 LGAFGKNGMYS---------------------EVLKVFRGMKKAGFEPDK---------- 398

Query: 267 VRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGL 326
               ++ + IEA+GR     +A  ++  M           +N++++   + G  + A  +
Sbjct: 399 ---ATFNILIEAYGRCGSSDQALSIYDGMLQAGCTPDLATFNTLLAALAREGRWEHAELI 455

Query: 327 LKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTL- 385
           L E++ +  KPN I Y  + L  + +    E  K +   +  I         P+ +  L 
Sbjct: 456 LDELNRSSYKPNDIAYASM-LHAYANGGELEKLKEMVDTLHTIY-------VPFTKILLK 507

Query: 386 SIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKINDP-----NLLRRM 440
           + + ++++   V  AE+ F  ++   Y   T  +N +I  Y K  + D       LLR  
Sbjct: 508 TFVLVYSKCSLVDEAEDAFLAMRHHGYLSDTSTFNAMISMYGKKGMMDKATDTFALLRST 567

Query: 441 ILGGARPDAETYSLL 455
              G  PD  TY+ L
Sbjct: 568 ---GLEPDVVTYNCL 579



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 76/379 (20%), Positives = 139/379 (36%), Gaps = 80/379 (21%)

Query: 43  KRALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQGEKLF-----CCIPKDYQNELL 97
           ++A+E+    +R     P    ++ L+    KN   S+   +F     C +  D    + 
Sbjct: 310 EQAMEIYNQ-MRTSNCTPNSFTFNALIGMHGKNKNFSEMMVIFEDMQACGVEPDI---VT 365

Query: 98  YNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMK 157
           +N+L+ A    G+    L+  + M+  G       FN LI      G      +I   M 
Sbjct: 366 WNSLLGAFGKNGMYSEVLKVFRGMKKAGFEPDKATFNILIEAYGRCGSSDQALSIYDGML 425

Query: 158 ADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHA------ 211
                P ++TF+ L+   A +   E    +  ++ RS  +PN+++Y  +  A+A      
Sbjct: 426 QAGCTPDLATFNTLLAALAREGRWEHAELILDELNRSSYKPNDIAYASMLHAYANGGELE 485

Query: 212 -----VARLYTVAETYVEALEKSMTG------------------------NNWSTLDVLI 242
                V  L+T+   + + L K+                           ++ ST + +I
Sbjct: 486 KLKEMVDTLHTIYVPFTKILLKTFVLVYSKCSLVDEAEDAFLAMRHHGYLSDTSTFNAMI 545

Query: 243 ILYG---YLAKGKDLERIWATVQELPNVRSK----------------------------- 270
            +YG    + K  D   +  +    P+V +                              
Sbjct: 546 SMYGKKGMMDKATDTFALLRSTGLEPDVVTYNCLMGMYGREGMYRKCEATLRECMAAGQT 605

Query: 271 ----SYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGL 326
               SY   I ++ +  Q+S A  ++ EM S      +  YN+ +  Y   G   +A  +
Sbjct: 606 PDLVSYNTVIFSYSKHGQLSSATRIFHEMVSNGIQPDSFTYNTFVGCYVNGGMFPEALSV 665

Query: 327 LKEMSMNGCKPNAITYRHL 345
           +K M   GCKP+ +TYR L
Sbjct: 666 VKHMHKTGCKPDEVTYRTL 684


>gi|255647669|gb|ACU24296.1| unknown [Glycine max]
          Length = 484

 Score = 92.4 bits (228), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 92/449 (20%), Positives = 193/449 (42%), Gaps = 21/449 (4%)

Query: 7   GEPVGSAFQSWMREGFPVHRGEIFHSINRLRKLQLNKRALEVMEWV-IRERPYRPKELDY 65
           G  V      ++ EG  + + E+   + +LRK +  + ALE++EW+ IR+  +     +Y
Sbjct: 41  GGTVSQTLDQYIMEGKVIKKPELERCVEQLRKYRRFQHALEIIEWMEIRKVNFSWS--NY 98

Query: 66  SYLLEFTIKNHGISQGEKLFCCIPKDYQNELLYNNLVIACLDKGVIK-LSLEYMKKMRVL 124
           +  L+   K  G+   E  F  +P   +N   Y  L + C  K ++K  +L +   M  L
Sbjct: 99  AVQLDLVSKTKGVDAAENFFGGLPPPAKNRYTYGAL-LNCYCKELMKDKALSHFDTMDEL 157

Query: 125 GHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGL 184
           G+ ++ L FN ++ L    G  + +P ++  MK   +     T+HI M   A+ +++ G 
Sbjct: 158 GY-VTNLAFNNVMTLFMKLGEPQKVPQLVELMKKRTIPMSPFTYHIWMNSCASSNDLGGA 216

Query: 185 MKVYSDMK-RSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLII 243
            +VY +MK  +E +    +Y  LA+ +   + +  AE  ++ LE+ +          L+ 
Sbjct: 217 ERVYEEMKTENEGQIGWHTYSNLASIYVKFKDFEKAEMMLKMLEEQVKPKQRDAYHCLLG 276

Query: 244 LYGYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKA 303
           LY       ++ R+W +++ +  V + SY++ +    R+  +    + + E ++      
Sbjct: 277 LYAGTGNLGEVHRVWDSLKSVSPVTNFSYLVMLSTLRRLNDMEGLTKCFKEWEASCVSYD 336

Query: 304 TEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALE 363
               +  +S +     +++A  + +E S     P             K + ++   + LE
Sbjct: 337 ARLVSVCVSAHLNQNMLEEAELVFEEASRRSKGPFFRVREEFMKFFLKKHELDAAVRHLE 396

Query: 364 LGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLI 423
             +  +   K R S    +   +  + + E+ DV   +   +  K  N+       ++ I
Sbjct: 397 AALSEVKGDKWRPSP---QVVGAFFKYYEEETDVDGVDEFSKIFKANNFD------DSWI 447

Query: 424 KAYVKAKINDPNLLRRMILGGARPDAETY 452
           K+ + A  + P      I  G + D++ Y
Sbjct: 448 KSCITASKSSPE-----IDPGMKEDSQVY 471


>gi|297795313|ref|XP_002865541.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297311376|gb|EFH41800.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 711

 Score = 92.4 bits (228), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 89/419 (21%), Positives = 181/419 (43%), Gaps = 51/419 (12%)

Query: 53  IRERPYRPKELDYSYLLEFTIKNHGISQGEKLFCCIPKD--YQNELLYNNLVIACLDKGV 110
           +R+   +P+   Y+ LL+  +K   +   E +   + K     +E  Y+ L+ A ++ G 
Sbjct: 332 LRQSGIKPRTKAYNALLKGYVKTGPLKDAELMVSEMEKRGVSPDEHTYSLLIDAYVNAGR 391

Query: 111 IKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHI 170
            + +   +K+M       +  VF+RL+      G  +    +L++MK+  V P    +++
Sbjct: 392 WESARIVLKEMETGDVQPNSFVFSRLLAGYRDRGEWQKTFQVLKEMKSIGVKPDRQFYNV 451

Query: 171 LMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSM 230
           ++      + ++  M  +  M    +EP+ V++  L   H     + VAE   EA+E+  
Sbjct: 452 VIDTFGKFNCLDHAMTTFDRMLSEGIEPDRVTWNTLIDCHCKHGRHIVAEEMFEAMERRG 511

Query: 231 TGNNWSTLDVLIILYGYLAKGKDLERIWATVQE---LPNVRSKSYVLAIEAFGRIAQVSR 287
                +T +++I  YG   +  D++R+   ++    LPNV + + +  ++ +G+  + + 
Sbjct: 512 CLPCATTYNIMINSYGDQERWDDMKRLLGKMKSQGILPNVVTHTTL--VDVYGKSGRFND 569

Query: 288 AEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLAL 347
           A E   EM+SV    ++  YN++I+ Y + G  ++A    + M+ +G KP+      LAL
Sbjct: 570 AIECLEEMKSVGLKPSSTMYNALINAYAQRGLSEQAVNAFRVMTSDGLKPSL-----LAL 624

Query: 348 GCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEEL 407
                                                 S+I  F E      A  + + +
Sbjct: 625 N-------------------------------------SLINAFGEDRRDAEAFAVLQYM 647

Query: 408 KKANYTKYTFVYNTLIKAYVKAKIND--PNLLRRMILGGARPDAETYSLLKLAEQFQKK 464
           K+         Y TL+KA ++       P +   MI+ G +PD +  S+L+ A ++ K+
Sbjct: 648 KENGVKPDVVTYTTLMKALIRVDKFQKVPGVYEEMIMSGCKPDRKARSMLRSALRYMKQ 706



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 82/406 (20%), Positives = 177/406 (43%), Gaps = 22/406 (5%)

Query: 53  IRERPYRPKELDYSYLLEFTIKNHGISQG--EKLFCCIPKDYQNEL---LYNNLVIACLD 107
           +R+  Y+   ++YS +++   + + I     ++L+  I +D + EL   L N++++    
Sbjct: 225 MRQDGYQSDFVNYSLVIQSLTRCNKIDSVMLQRLYKEIERD-KLELDVQLVNDIIMGFAK 283

Query: 108 KGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVST 167
            G    +L+ +   +  G S        +I   ++ GR      +  +++   + P    
Sbjct: 284 SGDPSRALQLLGMAQATGLSAKTATLVSIISALANSGRTLEAEALFEELRQSGIKPRTKA 343

Query: 168 FHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALE 227
           ++ L+K       ++    + S+M++  V P+E +Y +L  A+  A  +  A   ++ +E
Sbjct: 344 YNALLKGYVKTGPLKDAELMVSEMEKRGVSPDEHTYSLLIDAYVNAGRWESARIVLKEME 403

Query: 228 KSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSKS----YVLAIEAFGRIA 283
                 N      L  L GY  +G + ++ +  ++E+ ++  K     Y + I+ FG+  
Sbjct: 404 TGDVQPNSFVFSRL--LAGYRDRG-EWQKTFQVLKEMKSIGVKPDRQFYNVVIDTFGKFN 460

Query: 284 QVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYR 343
            +  A   +  M S         +N++I  +CK+G    A  + + M   GC P A TY 
Sbjct: 461 CLDHAMTTFDRMLSEGIEPDRVTWNTLIDCHCKHGRHIVAEEMFEAMERRGCLPCATTY- 519

Query: 344 HLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENL 403
           ++ +  +      +  K      +L+   K +   P + T  ++++++ + G   +A   
Sbjct: 520 NIMINSYGDQERWDDMK------RLLGKMKSQGILPNVVTHTTLVDVYGKSGRFNDAIEC 573

Query: 404 FEELKKANYTKYTFVYNTLIKAYVKAKINDP--NLLRRMILGGARP 447
            EE+K       + +YN LI AY +  +++   N  R M   G +P
Sbjct: 574 LEEMKSVGLKPSSTMYNALINAYAQRGLSEQAVNAFRVMTSDGLKP 619



 Score = 58.9 bits (141), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 62/221 (28%), Positives = 90/221 (40%), Gaps = 47/221 (21%)

Query: 272 YVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMS 331
           Y + I A GR  ++  A  L     S KQ      YN++I    +N  I+KA  L+  M 
Sbjct: 172 YSILIHALGRSEKLYEAFLL-----SQKQTLTPLTYNALIGACARNNDIEKALNLISRMR 226

Query: 332 MNGCKPNAITYRHLALGCFKSNLVEE---------------------------GF----- 359
            +G + + + Y  +     + N ++                            GF     
Sbjct: 227 QDGYQSDFVNYSLVIQSLTRCNKIDSVMLQRLYKEIERDKLELDVQLVNDIIMGFAKSGD 286

Query: 360 --KALEL-GMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYT 416
             +AL+L GM   T    +++T      +SII   A  G    AE LFEEL+++     T
Sbjct: 287 PSRALQLLGMAQATGLSAKTAT-----LVSIISALANSGRTLEAEALFEELRQSGIKPRT 341

Query: 417 FVYNTLIKAYVK-AKINDPNLL-RRMILGGARPDAETYSLL 455
             YN L+K YVK   + D  L+   M   G  PD  TYSLL
Sbjct: 342 KAYNALLKGYVKTGPLKDAELMVSEMEKRGVSPDEHTYSLL 382



 Score = 44.7 bits (104), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 61/298 (20%), Positives = 128/298 (42%), Gaps = 20/298 (6%)

Query: 167 TFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEAL 226
           T++ L+   A +++IE  + + S M++   + + V+Y ++    ++ R   +    ++ L
Sbjct: 201 TYNALIGACARNNDIEKALNLISRMRQDGYQSDFVNYSLVI--QSLTRCNKIDSVMLQRL 258

Query: 227 EKSMTGNNWSTLDVLI---ILYGYLAKG---KDLERIWATVQELPNVRSKSYVLAIEAFG 280
            K +  +    LDV +   I+ G+   G   + L+ +        + ++ + V  I A  
Sbjct: 259 YKEIERDKLE-LDVQLVNDIIMGFAKSGDPSRALQLLGMAQATGLSAKTATLVSIISALA 317

Query: 281 RIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAI 340
              +   AE L+ E++       T+ YN+++  Y K G +  A  ++ EM   G  P+  
Sbjct: 318 NSGRTLEAEALFEELRQSGIKPRTKAYNALLKGYVKTGPLKDAELMVSEMEKRGVSPDEH 377

Query: 341 TYRHLALGCFKSNLVEEG-FKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGN 399
           TY  L         V  G +++  + +K + T  V+ ++      L+    + ++G+   
Sbjct: 378 TYSLLI-----DAYVNAGRWESARIVLKEMETGDVQPNSFVFSRLLA---GYRDRGEWQK 429

Query: 400 AENLFEELKKANYTKYTFVYNTLIKAYVKAKINDPNL--LRRMILGGARPDAETYSLL 455
              + +E+K          YN +I  + K    D  +    RM+  G  PD  T++ L
Sbjct: 430 TFQVLKEMKSIGVKPDRQFYNVVIDTFGKFNCLDHAMTTFDRMLSEGIEPDRVTWNTL 487


>gi|15238925|ref|NP_199046.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75154282|sp|Q8L844.1|PP413_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g42310, mitochondrial; Flags: Precursor
 gi|21539517|gb|AAM53311.1| maize crp1 protein-like [Arabidopsis thaliana]
 gi|332007411|gb|AED94794.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 709

 Score = 92.4 bits (228), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 89/419 (21%), Positives = 181/419 (43%), Gaps = 51/419 (12%)

Query: 53  IRERPYRPKELDYSYLLEFTIKNHGISQGEKLFCCIPKD--YQNELLYNNLVIACLDKGV 110
           +R+   +P+   Y+ LL+  +K   +   E +   + K     +E  Y+ L+ A ++ G 
Sbjct: 330 LRQSGIKPRTRAYNALLKGYVKTGPLKDAESMVSEMEKRGVSPDEHTYSLLIDAYVNAGR 389

Query: 111 IKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHI 170
            + +   +K+M       +  VF+RL+      G  +    +L++MK+  V P    +++
Sbjct: 390 WESARIVLKEMEAGDVQPNSFVFSRLLAGFRDRGEWQKTFQVLKEMKSIGVKPDRQFYNV 449

Query: 171 LMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSM 230
           ++      + ++  M  +  M    +EP+ V++  L   H     + VAE   EA+E+  
Sbjct: 450 VIDTFGKFNCLDHAMTTFDRMLSEGIEPDRVTWNTLIDCHCKHGRHIVAEEMFEAMERRG 509

Query: 231 TGNNWSTLDVLIILYGYLAKGKDLERIWATVQE---LPNVRSKSYVLAIEAFGRIAQVSR 287
                +T +++I  YG   +  D++R+   ++    LPNV + + +  ++ +G+  + + 
Sbjct: 510 CLPCATTYNIMINSYGDQERWDDMKRLLGKMKSQGILPNVVTHTTL--VDVYGKSGRFND 567

Query: 288 AEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLAL 347
           A E   EM+SV    ++  YN++I+ Y + G  ++A    + M+ +G KP+      LAL
Sbjct: 568 AIECLEEMKSVGLKPSSTMYNALINAYAQRGLSEQAVNAFRVMTSDGLKPSL-----LAL 622

Query: 348 GCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEEL 407
                                                 S+I  F E      A  + + +
Sbjct: 623 N-------------------------------------SLINAFGEDRRDAEAFAVLQYM 645

Query: 408 KKANYTKYTFVYNTLIKAYVKAKIND--PNLLRRMILGGARPDAETYSLLKLAEQFQKK 464
           K+         Y TL+KA ++       P +   MI+ G +PD +  S+L+ A ++ K+
Sbjct: 646 KENGVKPDVVTYTTLMKALIRVDKFQKVPVVYEEMIMSGCKPDRKARSMLRSALRYMKQ 704



 Score = 76.3 bits (186), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 81/406 (19%), Positives = 176/406 (43%), Gaps = 22/406 (5%)

Query: 53  IRERPYRPKELDYSYLLEFTIKNHGISQGE--KLFCCIPKDYQNEL---LYNNLVIACLD 107
           +R+  Y+   ++YS +++   +++ I      +L+  I +D + EL   L N++++    
Sbjct: 223 MRQDGYQSDFVNYSLVIQSLTRSNKIDSVMLLRLYKEIERD-KLELDVQLVNDIIMGFAK 281

Query: 108 KGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVST 167
            G    +L+ +   +  G S        +I   +  GR      +  +++   + P    
Sbjct: 282 SGDPSKALQLLGMAQATGLSAKTATLVSIISALADSGRTLEAEALFEELRQSGIKPRTRA 341

Query: 168 FHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALE 227
           ++ L+K       ++    + S+M++  V P+E +Y +L  A+  A  +  A   ++ +E
Sbjct: 342 YNALLKGYVKTGPLKDAESMVSEMEKRGVSPDEHTYSLLIDAYVNAGRWESARIVLKEME 401

Query: 228 KSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSKS----YVLAIEAFGRIA 283
                 N      L  L G+  +G + ++ +  ++E+ ++  K     Y + I+ FG+  
Sbjct: 402 AGDVQPNSFVFSRL--LAGFRDRG-EWQKTFQVLKEMKSIGVKPDRQFYNVVIDTFGKFN 458

Query: 284 QVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYR 343
            +  A   +  M S         +N++I  +CK+G    A  + + M   GC P A TY 
Sbjct: 459 CLDHAMTTFDRMLSEGIEPDRVTWNTLIDCHCKHGRHIVAEEMFEAMERRGCLPCATTY- 517

Query: 344 HLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENL 403
           ++ +  +      +  K      +L+   K +   P + T  ++++++ + G   +A   
Sbjct: 518 NIMINSYGDQERWDDMK------RLLGKMKSQGILPNVVTHTTLVDVYGKSGRFNDAIEC 571

Query: 404 FEELKKANYTKYTFVYNTLIKAYVKAKINDP--NLLRRMILGGARP 447
            EE+K       + +YN LI AY +  +++   N  R M   G +P
Sbjct: 572 LEEMKSVGLKPSSTMYNALINAYAQRGLSEQAVNAFRVMTSDGLKP 617



 Score = 62.4 bits (150), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 63/221 (28%), Positives = 94/221 (42%), Gaps = 47/221 (21%)

Query: 272 YVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMS 331
           Y + I A GR  ++  A  L     S KQ      YN++I    +N  I+KA  L+ +M 
Sbjct: 170 YSILIHALGRSEKLYEAFLL-----SQKQTLTPLTYNALIGACARNNDIEKALNLIAKMR 224

Query: 332 MNGCKPNAITYRHLALGCFKSNLVEE---------------------------GF----- 359
            +G + + + Y  +     +SN ++                            GF     
Sbjct: 225 QDGYQSDFVNYSLVIQSLTRSNKIDSVMLLRLYKEIERDKLELDVQLVNDIIMGFAKSGD 284

Query: 360 --KALEL-GMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYT 416
             KAL+L GM   T    +++T      +SII   A+ G    AE LFEEL+++     T
Sbjct: 285 PSKALQLLGMAQATGLSAKTAT-----LVSIISALADSGRTLEAEALFEELRQSGIKPRT 339

Query: 417 FVYNTLIKAYVK-AKINDP-NLLRRMILGGARPDAETYSLL 455
             YN L+K YVK   + D  +++  M   G  PD  TYSLL
Sbjct: 340 RAYNALLKGYVKTGPLKDAESMVSEMEKRGVSPDEHTYSLL 380



 Score = 42.7 bits (99), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 61/298 (20%), Positives = 125/298 (41%), Gaps = 20/298 (6%)

Query: 167 TFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEAL 226
           T++ L+   A +++IE  + + + M++   + + V+Y ++    ++ R   +    +  L
Sbjct: 199 TYNALIGACARNNDIEKALNLIAKMRQDGYQSDFVNYSLVI--QSLTRSNKIDSVMLLRL 256

Query: 227 EKSMTGNNWSTLDVLI---ILYGYLAKG---KDLERIWATVQELPNVRSKSYVLAIEAFG 280
            K +  +    LDV +   I+ G+   G   K L+ +        + ++ + V  I A  
Sbjct: 257 YKEIERDKLE-LDVQLVNDIIMGFAKSGDPSKALQLLGMAQATGLSAKTATLVSIISALA 315

Query: 281 RIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAI 340
              +   AE L+ E++       T  YN+++  Y K G +  A  ++ EM   G  P+  
Sbjct: 316 DSGRTLEAEALFEELRQSGIKPRTRAYNALLKGYVKTGPLKDAESMVSEMEKRGVSPDEH 375

Query: 341 TYRHLALGCFKSNLVEEG-FKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGN 399
           TY  L         V  G +++  + +K +    V+ ++      L+    F ++G+   
Sbjct: 376 TYSLLI-----DAYVNAGRWESARIVLKEMEAGDVQPNSFVFSRLLA---GFRDRGEWQK 427

Query: 400 AENLFEELKKANYTKYTFVYNTLIKAYVKAKINDPNL--LRRMILGGARPDAETYSLL 455
              + +E+K          YN +I  + K    D  +    RM+  G  PD  T++ L
Sbjct: 428 TFQVLKEMKSIGVKPDRQFYNVVIDTFGKFNCLDHAMTTFDRMLSEGIEPDRVTWNTL 485


>gi|226533322|ref|NP_001142217.1| uncharacterized protein LOC100274385 [Zea mays]
 gi|194707648|gb|ACF87908.1| unknown [Zea mays]
 gi|414870857|tpg|DAA49414.1| TPA: hypothetical protein ZEAMMB73_857299 [Zea mays]
          Length = 472

 Score = 92.0 bits (227), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 99/417 (23%), Positives = 176/417 (42%), Gaps = 28/417 (6%)

Query: 51  WVIRERPYRPKELDYSYLLEFTIKNHGISQGEKLFCCIPKDYQNELLYNNLVIACLDKGV 110
           W+   R       D +Y L+   K HG+ +  + F  +PK  +    Y +L+   ++   
Sbjct: 52  WMTDRRHLHLSVGDVAYRLDLISKVHGLEKAVEYFGMVPKQLRKPQCYGSLLKCYVEAKA 111

Query: 111 IKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHI 170
           +  + E+  KM+ +G + SY  +  ++ L    G+ + +  + + M+   V P   +   
Sbjct: 112 VDKAEEHFAKMQEMGMTSSY-AYTWMMKLYLQTGQLERVHAMFQDMEEKGVKPDTFSVEA 170

Query: 171 LMKIEANDHNIEGLMKVYSDMKRSEVEPNE--VSYCILATAHAV----ARLYTVAETYVE 224
           ++       +++G+ KV       +  P+E  V++   A+A ++              VE
Sbjct: 171 MLAAYIAAEDVQGVGKVL-----DKANPHEKLVTWHGHASAASLFMKSGMQVGAVMALVE 225

Query: 225 ALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQ 284
           A  +    ++      L+  Y  L    +  RIW+  +      +  Y+  + A  R   
Sbjct: 226 AERRISPKSSRIAYAFLLKTYTELGMHAEAGRIWSVYKSKVPPCNTMYMSRLSALLRTND 285

Query: 285 VSRAEELWLEMQSVK-QLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYR 343
           +  AE    E ++V  +       N ++  YC+ G ++KA  L+      G  P A T+ 
Sbjct: 286 IDGAEATLKEWETVPLRYHDFRLINVMVDAYCREGLVEKAVALVDGAIKKGRTPYANTWY 345

Query: 344 HLALGCFKSNLVEEGFKALELGMKLITTKKVRSST-PW---LETTLSIIEIFAEKGDVGN 399
            LA G FK+  V E           +T K + S+T PW   L   L  +  F ++ DVG 
Sbjct: 346 KLAGGFFKTGQVPEAVD--------MTRKALDSATPPWRPDLANVLMSLNHFVDQKDVGA 397

Query: 400 AENLFEELKK-ANYTKYTFVYNTLIKAYVKAKINDPNLLRRMILGGARPDAETYSLL 455
           AE +   L+K    T+   VY+ L+K YV+A     +LL RM   G   D ET  +L
Sbjct: 398 AEEMVSTLQKLVPLTR--DVYHCLLKTYVRAGKPPSDLLERMKEDGLEADEETERIL 452


>gi|224085950|ref|XP_002307751.1| predicted protein [Populus trichocarpa]
 gi|222857200|gb|EEE94747.1| predicted protein [Populus trichocarpa]
          Length = 480

 Score = 92.0 bits (227), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 76/312 (24%), Positives = 141/312 (45%), Gaps = 29/312 (9%)

Query: 156 MKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARL 215
           MKA  V   V TF ILM+           +  ++ M+    +P+++++ IL +     R 
Sbjct: 120 MKARNVDVTVETFLILMRRYVRAGLAAEAIHAFNRMEDYNCKPDKIAFSILISILCRERR 179

Query: 216 YTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKG-------KDLERIWATVQEL---P 265
            + A+ + ++L+     +        +I+Y  L +G        + ER++  ++     P
Sbjct: 180 ASQAQEFFDSLKDKFEPD--------VIVYTNLVRGWCRAGNISEAERVFGEMKVAGIKP 231

Query: 266 NVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASG 325
           NV +  Y + I++  R  Q++RA +++ EM        +  YNS++ ++ K G  +K   
Sbjct: 232 NVYT--YSIVIDSLCRCGQITRAHDIFAEMLDAGCQPNSITYNSLMRIHVKAGRTEKVLQ 289

Query: 326 LLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTL 385
           +  +M   GC+P+ +TY  L     K   +E+  K + L  K       +   P   T  
Sbjct: 290 VYNQMKRLGCEPDTVTYNFLIETHCKDENLEDAIKVIGLMAK-------KGCAPNASTFN 342

Query: 386 SIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKINDP--NLLRRMILG 443
           ++    A+ GDV  A  +++++K+ N    T  YNTL+K +V +K  D    L   M   
Sbjct: 343 TLFGCIAKLGDVNAAHRMYKKMKELNCEANTVTYNTLMKMFVASKSTDMVLKLKTEMDEN 402

Query: 444 GARPDAETYSLL 455
              P+  TY +L
Sbjct: 403 KIEPNVNTYKVL 414



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 69/292 (23%), Positives = 125/292 (42%), Gaps = 13/292 (4%)

Query: 59  RPKELDYSYLLEFTIKNHGISQGEKLFCCIPKDYQNELL-YNNLVIACLDKGVIKLSLEY 117
           +P ++ +S L+    +    SQ ++ F  +   ++ +++ Y NLV      G I  +   
Sbjct: 161 KPDKIAFSILISILCRERRASQAQEFFDSLKDKFEPDVIVYTNLVRGWCRAGNISEAERV 220

Query: 118 MKKMRVLGHSISYLVFNRLIILNS--SPGRRKTIPNILRQMKADKVAPHVSTFHILMKIE 175
             +M+V G  I   V+   I+++S    G+     +I  +M      P+  T++ LM+I 
Sbjct: 221 FGEMKVAG--IKPNVYTYSIVIDSLCRCGQITRAHDIFAEMLDAGCQPNSITYNSLMRIH 278

Query: 176 ANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNW 235
                 E +++VY+ MKR   EP+ V+Y  L   H        A   +  + K     N 
Sbjct: 279 VKAGRTEKVLQVYNQMKRLGCEPDTVTYNFLIETHCKDENLEDAIKVIGLMAKKGCAPNA 338

Query: 236 STLDVLIILYGYLAKGKDL---ERIWATVQEL-PNVRSKSYVLAIEAFGRIAQVSRAEEL 291
           ST +    L+G +AK  D+    R++  ++EL     + +Y   ++ F          +L
Sbjct: 339 STFNT---LFGCIAKLGDVNAAHRMYKKMKELNCEANTVTYNTLMKMFVASKSTDMVLKL 395

Query: 292 WLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGC-KPNAITY 342
             EM   K       Y  +I++YC  G  + A    +EM    C +P+   Y
Sbjct: 396 KTEMDENKIEPNVNTYKVLITMYCGMGHWNNAYKFFREMIDEKCLRPSLPVY 447


>gi|356529689|ref|XP_003533421.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Glycine max]
          Length = 892

 Score = 92.0 bits (227), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 107/474 (22%), Positives = 190/474 (40%), Gaps = 77/474 (16%)

Query: 52  VIRERPYRPKELDYSYLLEFTIKNHGISQGEKLFCCIPKDYQNELLYNNLVIACLDKGVI 111
           ++R  P  P    Y+ L+    +N  + +   +FC +P+  +N + Y NL+    + G +
Sbjct: 215 ILRCEP-GPDLFTYTSLVLGYCRNDDVERACGVFCVMPR--RNAVSYTNLIHGLCEAGKL 271

Query: 112 KLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHIL 171
             +LE+  +MR  G   +   +  L+      GR     ++  +M+     P+V T+ +L
Sbjct: 272 HEALEFWARMREDGCFPTVRTYTVLVCALCESGRELEALSLFGEMRERGCEPNVYTYTVL 331

Query: 172 MKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMT 231
           +     +  ++  +K+ ++M    V P+ V +  L  ++    +   A   +  +E    
Sbjct: 332 IDYLCKEGRMDEALKMLNEMVEKGVAPSVVPFNALIGSYCKRGMMEDAVGVLGLMESKKV 391

Query: 232 GNNWSTLDVLIILYGYLAKGKDLERIWATVQEL------PNV------------------ 267
             N  T + LI  +    +GK ++R  A + ++      P+V                  
Sbjct: 392 CPNVRTYNELICGF---CRGKSMDRAMALLNKMVESKLSPDVVTYNTLIHGLCEVGVVDS 448

Query: 268 RSKSYVLAIE---------------AFGRIAQVSRAEELWLEMQSVKQLKATEQ-YNSVI 311
            S+ + L I                   R+ +V  A ++ LE    K +KA E  Y ++I
Sbjct: 449 ASRLFRLMIRDGFSPDQWTFNAFMVCLCRMGRVGEAHQI-LESLKEKHVKANEHAYTALI 507

Query: 312 SVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSN------------------ 353
             YCK G I+ A+ L K M    C PN+IT+  +  G  K                    
Sbjct: 508 DGYCKAGKIEHAASLFKRMLAEECLPNSITFNVMIDGLRKEGKVQDAMLLVEDMAKFDVK 567

Query: 354 --------LVEEGFKALELGMKLITTKKVRSS--TPWLETTLSIIEIFAEKGDVGNAENL 403
                   LVEE  K  +         ++ SS   P + T  + I+ +  +G +  AE +
Sbjct: 568 PTLHTYNILVEEVLKEYDFDRANEILNRLISSGYQPNVVTYTAFIKAYCSQGRLEEAEEM 627

Query: 404 FEELKKANYTKYTFVYNTLIKAYVKAKINDP--NLLRRMILGGARPDAETYSLL 455
             ++K       +F+YN LI AY    + D    +LRRM   G  P   TYS+L
Sbjct: 628 VIKIKNEGVLLDSFIYNLLINAYGCMGLLDSAFGVLRRMFGTGCEPSYLTYSIL 681



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 78/346 (22%), Positives = 138/346 (39%), Gaps = 39/346 (11%)

Query: 132 VFNRLIILNSSPGRRKTIPNILRQMKADKVAPH----------VSTFHILMKIEANDHNI 181
           V N +I   +SP     + N+LR+M     A            +++++ L+   +    +
Sbjct: 108 VRNSMIKSCTSPHDATFLLNLLRRMNTAAAAADHQHQLAFKLSLTSYNRLLMCLSRFSMV 167

Query: 182 EGLMKVYSDM---KRSEVEPNEV-------SYCILATAHAVARLYTVAETYVEALEKSMT 231
           + ++ +Y +M     + V PN +       SYC L    AVARL+ V     E       
Sbjct: 168 DEMISLYKEMLTDNGNSVFPNLITLNTMLNSYCKLGNM-AVARLFFVRILRCEP------ 220

Query: 232 GNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEEL 291
           G +  T   L++ Y    +  D+ER       +P   + SY   I       ++  A E 
Sbjct: 221 GPDLFTYTSLVLGY---CRNDDVERACGVFCVMPRRNAVSYTNLIHGLCEAGKLHEALEF 277

Query: 292 WLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFK 351
           W  M+          Y  ++   C++G   +A  L  EM   GC+PN  TY  L      
Sbjct: 278 WARMREDGCFPTVRTYTVLVCALCESGRELEALSLFGEMRERGCEPNVYTYTVLI----- 332

Query: 352 SNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKAN 411
             L +EG   ++  +K++     +   P +    ++I  + ++G + +A  +   ++   
Sbjct: 333 DYLCKEG--RMDEALKMLNEMVEKGVAPSVVPFNALIGSYCKRGMMEDAVGVLGLMESKK 390

Query: 412 YTKYTFVYNTLIKAYVKAKINDP--NLLRRMILGGARPDAETYSLL 455
                  YN LI  + + K  D    LL +M+     PD  TY+ L
Sbjct: 391 VCPNVRTYNELICGFCRGKSMDRAMALLNKMVESKLSPDVVTYNTL 436



 Score = 65.1 bits (157), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 87/397 (21%), Positives = 164/397 (41%), Gaps = 33/397 (8%)

Query: 98  YNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMK 157
           YN L+    + GV+  +    + M   G S     FN  ++     GR      IL  +K
Sbjct: 433 YNTLIHGLCEVGVVDSASRLFRLMIRDGFSPDQWTFNAFMVCLCRMGRVGEAHQILESLK 492

Query: 158 ADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYT 217
              V  +   +  L+        IE    ++  M   E  PN +++ ++           
Sbjct: 493 EKHVKANEHAYTALIDGYCKAGKIEHAASLFKRMLAEECLPNSITFNVMIDGLRKEGKVQ 552

Query: 218 VAETYVEALEKSMTGNNWSTLDVLI--IL--YGYLAKGKDLERIWATVQELPNVRSKSYV 273
            A   VE + K        T ++L+  +L  Y +    + L R+ ++  + PNV   +Y 
Sbjct: 553 DAMLLVEDMAKFDVKPTLHTYNILVEEVLKEYDFDRANEILNRLISSGYQ-PNV--VTYT 609

Query: 274 LAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMN 333
             I+A+    ++  AEE+ +++++   L  +  YN +I+ Y   G +D A G+L+ M   
Sbjct: 610 AFIKAYCSQGRLEEAEEMVIKIKNEGVLLDSFIYNLLINAYGCMGLLDSAFGVLRRMFGT 669

Query: 334 GCKPNAITY----RHLALGCFK---SNLV-------------EEGFKALELGMKLITTKK 373
           GC+P+ +TY    +HL +   K   SN V              + +  ++ G+  +  +K
Sbjct: 670 GCEPSYLTYSILMKHLVIEKHKKEGSNPVGLDVSLTNISVDNTDIWSKIDFGITTVLFEK 729

Query: 374 VR--SSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKI 431
           +      P L T   +I    + G +  A +L+  +++   +    ++N+L+ +  K  +
Sbjct: 730 MAECGCVPNLNTYSKLINGLCKVGRLNVAFSLYHHMREGGISPSEIIHNSLLSSCCKLGM 789

Query: 432 --NDPNLLRRMILGGARPDAETYSLL--KLAEQFQKK 464
                 LL  M+        E+Y LL   L EQ  K+
Sbjct: 790 FGEAVTLLDSMMECSHLAHLESYKLLICGLFEQMNKE 826


>gi|296085044|emb|CBI28459.3| unnamed protein product [Vitis vinifera]
          Length = 973

 Score = 92.0 bits (227), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 100/447 (22%), Positives = 185/447 (41%), Gaps = 67/447 (14%)

Query: 59  RPKELDYSYLLEFTIKNHGISQG-----EKLFCCIPKDYQNELLYNNLVIACLDKGVIKL 113
           +P+ + Y+ L++  ++   I Q      E + C I     N +++N L+      G ++ 
Sbjct: 308 KPEPITYNALIDGFMRQGDIEQAFRIKDEMVACGIEA---NLIIWNTLLNGVCKAGKMEK 364

Query: 114 SLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMK 173
           +LE M++M   G       ++ LI  +           +L +MK  K+AP V T+ +++ 
Sbjct: 365 ALEIMQEMMEKGVEPDSQTYSLLIEGHCRGQNMARAFELLDEMKKRKLAPTVLTYSVIIN 424

Query: 174 IEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGN 233
                 N++G   +  +M  + ++PN V Y  L TAHA       +   +E + +     
Sbjct: 425 GLCRCGNLQGTNAILREMVMNGLKPNAVVYTTLMTAHAKEGRVEESRMILERMREQGILP 484

Query: 234 NWSTLDVLIILYGYLAKGKDLERIWATVQEL------PNVRSKSYVLAIEAFGRIAQVSR 287
           +    + LII +    K K +E     + E+      PN  + +Y   I+ + +  ++  
Sbjct: 485 DVFCYNSLIIGF---CKAKRMEEARTYLMEMLERRLRPN--AHTYGAFIDGYSKAGEMEI 539

Query: 288 AEELWLEMQSVKQLKATEQYNSVISVYCK------------------------------- 316
           A+  + EM S   L     Y ++I  +CK                               
Sbjct: 540 ADRYFNEMLSCGVLPNVGIYTALIEGHCKEGNVTEAFSVFRFILSRRVLQDVQTYSVLIH 599

Query: 317 ----NGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTK 372
               NG + +A G+  E+   G  PNA TY  L  G  K   V++  + LE         
Sbjct: 600 GLSRNGKMHEAFGIFSELQEKGLLPNAFTYNSLISGSCKQGNVDKASQLLE-------EM 652

Query: 373 KVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKIN 432
            ++   P + T   +I+   + G++  A+NLF++++    T     Y  ++  Y K+K  
Sbjct: 653 CIKGINPDIVTYNILIDGLCKAGEIERAKNLFDDIEGRGLTPNCVTYAAMVDGYCKSK-- 710

Query: 433 DPN----LLRRMILGGARPDAETYSLL 455
           +P     LL  M+L G  PDA  Y+++
Sbjct: 711 NPTAAFQLLEEMLLRGVPPDAFIYNVI 737



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 56/256 (21%), Positives = 107/256 (41%), Gaps = 14/256 (5%)

Query: 94  NELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNIL 153
           N   YN+L+     +G +  + + +++M + G +   + +N LI      G  +   N+ 
Sbjct: 625 NAFTYNSLISGSCKQGNVDKASQLLEEMCIKGINPDIVTYNILIDGLCKAGEIERAKNLF 684

Query: 154 RQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSY-CILATAHAV 212
             ++   + P+  T+  ++       N     ++  +M    V P+   Y  IL      
Sbjct: 685 DDIEGRGLTPNCVTYAAMVDGYCKSKNPTAAFQLLEEMLLRGVPPDAFIYNVILNFCCKE 744

Query: 213 ARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQEL------PN 266
            +     + + E LEK       ST+    ++ GY   GK L+     ++E+      PN
Sbjct: 745 EKFEKALDLFQEMLEKGFA----STVSFNTLIEGYCKSGK-LQEANHLLEEMIEKQFIPN 799

Query: 267 VRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGL 326
               +Y   I+   +   +  A+ LWLEMQ    +   + Y S++  Y   G + + S L
Sbjct: 800 --HVTYTSLIDHNCKAGMMGEAKRLWLEMQERNVMPTAKTYTSLLHGYHNIGNMSEVSAL 857

Query: 327 LKEMSMNGCKPNAITY 342
            +EM   G +P+ +TY
Sbjct: 858 FEEMVAKGIEPDKMTY 873



 Score = 57.4 bits (137), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 73/342 (21%), Positives = 135/342 (39%), Gaps = 56/342 (16%)

Query: 131 LVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSD 190
             +N LI  +   G       +L +M    + P + T++IL+        IE    ++ D
Sbjct: 627 FTYNSLISGSCKQGNVDKASQLLEEMCIKGINPDIVTYNILIDGLCKAGEIERAKNLFDD 686

Query: 191 MKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAK 250
           ++   + PN V+Y  +   +  ++  T A    + LE+ +         +  ++  +  K
Sbjct: 687 IEGRGLTPNCVTYAAMVDGYCKSKNPTAA---FQLLEEMLLRGVPPDAFIYNVILNFCCK 743

Query: 251 GKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSV 310
            +  E+     QE+                            LE    K   +T  +N++
Sbjct: 744 EEKFEKALDLFQEM----------------------------LE----KGFASTVSFNTL 771

Query: 311 ISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELG--MKL 368
           I  YCK+G + +A+ LL+EM      PN +TY         ++L++   KA  +G   +L
Sbjct: 772 IEGYCKSGKLQEANHLLEEMIEKQFIPNHVTY---------TSLIDHNCKAGMMGEAKRL 822

Query: 369 ITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVK 428
               + R+  P  +T  S++  +   G++     LFEE+           Y  +I AY +
Sbjct: 823 WLEMQERNVMPTAKTYTSLLHGYHNIGNMSEVSALFEEMVAKGIEPDKMTYYVMIDAYCR 882

Query: 429 -------AKINDPNLLRRMIL-GGARPDAETYSLLKLAEQFQ 462
                   K+ D  L++ M +  G R    T S+  +A  FQ
Sbjct: 883 EGNVMEACKLKDEILVKGMPMKSGFRLGLPTCSV--IARGFQ 922



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 68/283 (24%), Positives = 120/283 (42%), Gaps = 28/283 (9%)

Query: 179 HNIEGLMKVYSDMKRSEVEPNEVSYCILATAHA-VARLYTVAETYVEALEKSMTGNNWST 237
           + +E   KV+  M   +V P+  +Y  + +AH  V  +       +E  EK+        
Sbjct: 203 NKVELFWKVFDGMCAHKVLPDVYTYTNMISAHCKVGNVKDAKRVLLEMGEKAR------- 255

Query: 238 LDVLIILYGYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQS 297
                     L +  +L+R       +P++ +  Y + I  F    +   A+ + LEM  
Sbjct: 256 ---------LLDEAIELKRSMVDKGLVPDLYT--YDILINGFCMEKRSREAKLMLLEMID 304

Query: 298 VKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEE 357
           V        YN++I  + + G I++A  +  EM   G + N I +  L  G  K+  +E 
Sbjct: 305 VGLKPEPITYNALIDGFMRQGDIEQAFRIKDEMVACGIEANLIIWNTLLNGVCKAGKME- 363

Query: 358 GFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTF 417
             KALE+ M+ +  K V    P  +T   +IE      ++  A  L +E+KK        
Sbjct: 364 --KALEI-MQEMMEKGVE---PDSQTYSLLIEGHCRGQNMARAFELLDEMKKRKLAPTVL 417

Query: 418 VYNTLIKAYVK-AKINDPN-LLRRMILGGARPDAETYSLLKLA 458
            Y+ +I    +   +   N +LR M++ G +P+A  Y+ L  A
Sbjct: 418 TYSVIINGLCRCGNLQGTNAILREMVMNGLKPNAVVYTTLMTA 460


>gi|10177016|dbj|BAB10204.1| maize crp1 protein-like [Arabidopsis thaliana]
          Length = 680

 Score = 92.0 bits (227), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 89/419 (21%), Positives = 181/419 (43%), Gaps = 51/419 (12%)

Query: 53  IRERPYRPKELDYSYLLEFTIKNHGISQGEKLFCCIPKD--YQNELLYNNLVIACLDKGV 110
           +R+   +P+   Y+ LL+  +K   +   E +   + K     +E  Y+ L+ A ++ G 
Sbjct: 301 LRQSGIKPRTRAYNALLKGYVKTGPLKDAESMVSEMEKRGVSPDEHTYSLLIDAYVNAGR 360

Query: 111 IKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHI 170
            + +   +K+M       +  VF+RL+      G  +    +L++MK+  V P    +++
Sbjct: 361 WESARIVLKEMEAGDVQPNSFVFSRLLAGFRDRGEWQKTFQVLKEMKSIGVKPDRQFYNV 420

Query: 171 LMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSM 230
           ++      + ++  M  +  M    +EP+ V++  L   H     + VAE   EA+E+  
Sbjct: 421 VIDTFGKFNCLDHAMTTFDRMLSEGIEPDRVTWNTLIDCHCKHGRHIVAEEMFEAMERRG 480

Query: 231 TGNNWSTLDVLIILYGYLAKGKDLERIWATVQE---LPNVRSKSYVLAIEAFGRIAQVSR 287
                +T +++I  YG   +  D++R+   ++    LPNV + + +  ++ +G+  + + 
Sbjct: 481 CLPCATTYNIMINSYGDQERWDDMKRLLGKMKSQGILPNVVTHTTL--VDVYGKSGRFND 538

Query: 288 AEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLAL 347
           A E   EM+SV    ++  YN++I+ Y + G  ++A    + M+ +G KP+      LAL
Sbjct: 539 AIECLEEMKSVGLKPSSTMYNALINAYAQRGLSEQAVNAFRVMTSDGLKPSL-----LAL 593

Query: 348 GCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEEL 407
                                                 S+I  F E      A  + + +
Sbjct: 594 N-------------------------------------SLINAFGEDRRDAEAFAVLQYM 616

Query: 408 KKANYTKYTFVYNTLIKAYVKAKIND--PNLLRRMILGGARPDAETYSLLKLAEQFQKK 464
           K+         Y TL+KA ++       P +   MI+ G +PD +  S+L+ A ++ K+
Sbjct: 617 KENGVKPDVVTYTTLMKALIRVDKFQKVPVVYEEMIMSGCKPDRKARSMLRSALRYMKQ 675



 Score = 75.9 bits (185), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 81/406 (19%), Positives = 176/406 (43%), Gaps = 22/406 (5%)

Query: 53  IRERPYRPKELDYSYLLEFTIKNHGISQGE--KLFCCIPKDYQNEL---LYNNLVIACLD 107
           +R+  Y+   ++YS +++   +++ I      +L+  I +D + EL   L N++++    
Sbjct: 194 MRQDGYQSDFVNYSLVIQSLTRSNKIDSVMLLRLYKEIERD-KLELDVQLVNDIIMGFAK 252

Query: 108 KGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVST 167
            G    +L+ +   +  G S        +I   +  GR      +  +++   + P    
Sbjct: 253 SGDPSKALQLLGMAQATGLSAKTATLVSIISALADSGRTLEAEALFEELRQSGIKPRTRA 312

Query: 168 FHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALE 227
           ++ L+K       ++    + S+M++  V P+E +Y +L  A+  A  +  A   ++ +E
Sbjct: 313 YNALLKGYVKTGPLKDAESMVSEMEKRGVSPDEHTYSLLIDAYVNAGRWESARIVLKEME 372

Query: 228 KSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSKS----YVLAIEAFGRIA 283
                 N      L  L G+  +G + ++ +  ++E+ ++  K     Y + I+ FG+  
Sbjct: 373 AGDVQPNSFVFSRL--LAGFRDRG-EWQKTFQVLKEMKSIGVKPDRQFYNVVIDTFGKFN 429

Query: 284 QVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYR 343
            +  A   +  M S         +N++I  +CK+G    A  + + M   GC P A TY 
Sbjct: 430 CLDHAMTTFDRMLSEGIEPDRVTWNTLIDCHCKHGRHIVAEEMFEAMERRGCLPCATTY- 488

Query: 344 HLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENL 403
           ++ +  +      +  K      +L+   K +   P + T  ++++++ + G   +A   
Sbjct: 489 NIMINSYGDQERWDDMK------RLLGKMKSQGILPNVVTHTTLVDVYGKSGRFNDAIEC 542

Query: 404 FEELKKANYTKYTFVYNTLIKAYVKAKINDP--NLLRRMILGGARP 447
            EE+K       + +YN LI AY +  +++   N  R M   G +P
Sbjct: 543 LEEMKSVGLKPSSTMYNALINAYAQRGLSEQAVNAFRVMTSDGLKP 588



 Score = 62.8 bits (151), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 63/221 (28%), Positives = 94/221 (42%), Gaps = 47/221 (21%)

Query: 272 YVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMS 331
           Y + I A GR  ++  A  L     S KQ      YN++I    +N  I+KA  L+ +M 
Sbjct: 141 YSILIHALGRSEKLYEAFLL-----SQKQTLTPLTYNALIGACARNNDIEKALNLIAKMR 195

Query: 332 MNGCKPNAITYRHLALGCFKSNLVEE---------------------------GF----- 359
            +G + + + Y  +     +SN ++                            GF     
Sbjct: 196 QDGYQSDFVNYSLVIQSLTRSNKIDSVMLLRLYKEIERDKLELDVQLVNDIIMGFAKSGD 255

Query: 360 --KALEL-GMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYT 416
             KAL+L GM   T    +++T      +SII   A+ G    AE LFEEL+++     T
Sbjct: 256 PSKALQLLGMAQATGLSAKTAT-----LVSIISALADSGRTLEAEALFEELRQSGIKPRT 310

Query: 417 FVYNTLIKAYVK-AKINDP-NLLRRMILGGARPDAETYSLL 455
             YN L+K YVK   + D  +++  M   G  PD  TYSLL
Sbjct: 311 RAYNALLKGYVKTGPLKDAESMVSEMEKRGVSPDEHTYSLL 351



 Score = 42.4 bits (98), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 61/298 (20%), Positives = 125/298 (41%), Gaps = 20/298 (6%)

Query: 167 TFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEAL 226
           T++ L+   A +++IE  + + + M++   + + V+Y ++    ++ R   +    +  L
Sbjct: 170 TYNALIGACARNNDIEKALNLIAKMRQDGYQSDFVNYSLVI--QSLTRSNKIDSVMLLRL 227

Query: 227 EKSMTGNNWSTLDVLI---ILYGYLAKG---KDLERIWATVQELPNVRSKSYVLAIEAFG 280
            K +  +    LDV +   I+ G+   G   K L+ +        + ++ + V  I A  
Sbjct: 228 YKEIERDKLE-LDVQLVNDIIMGFAKSGDPSKALQLLGMAQATGLSAKTATLVSIISALA 286

Query: 281 RIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAI 340
              +   AE L+ E++       T  YN+++  Y K G +  A  ++ EM   G  P+  
Sbjct: 287 DSGRTLEAEALFEELRQSGIKPRTRAYNALLKGYVKTGPLKDAESMVSEMEKRGVSPDEH 346

Query: 341 TYRHLALGCFKSNLVEEG-FKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGN 399
           TY  L         V  G +++  + +K +    V+ ++      L+    F ++G+   
Sbjct: 347 TYSLLI-----DAYVNAGRWESARIVLKEMEAGDVQPNSFVFSRLLA---GFRDRGEWQK 398

Query: 400 AENLFEELKKANYTKYTFVYNTLIKAYVKAKINDPNL--LRRMILGGARPDAETYSLL 455
              + +E+K          YN +I  + K    D  +    RM+  G  PD  T++ L
Sbjct: 399 TFQVLKEMKSIGVKPDRQFYNVVIDTFGKFNCLDHAMTTFDRMLSEGIEPDRVTWNTL 456


>gi|297826989|ref|XP_002881377.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297327216|gb|EFH57636.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 589

 Score = 91.7 bits (226), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 101/438 (23%), Positives = 191/438 (43%), Gaps = 40/438 (9%)

Query: 33  INRLRKLQLNKR---ALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQGEKLFC--- 86
           IN   +L+LNK+    + V EW++R   ++P  + ++ L++   +     + E L+    
Sbjct: 136 INVSVQLRLNKKWDSIILVCEWILRRSSFQPDVICFNLLIDAYGQKFRFKEAESLYVQLL 195

Query: 87  ---CIPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLI-ILNSS 142
              C+P     E  Y  L+ A    G+I+ +   + +M+    S S  V+N  I  L   
Sbjct: 196 ESRCVP----TEDTYTLLIKAYCMAGLIEKAEAVLIEMQNHHVSPSVTVYNAYIEGLMKR 251

Query: 143 PGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVS 202
            G  +   ++ ++MK D+  P   T+++++ +           K++ +M+  + +PN  +
Sbjct: 252 KGNTEQAIDVFQRMKRDRCKPTTETYNLMINLYGKASKSYMSWKLFCEMRSHQCKPNICT 311

Query: 203 YCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQ 262
           Y  L  A A   L   AE   E L++    ++ +        Y Y A       I++ +Q
Sbjct: 312 YTALVNAFAREGLCEKAEEIFEQLQEDGHIDSRAG-------YPYGAA-----EIFSLMQ 359

Query: 263 ELPNVRSK-SYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFID 321
            +     + SY + ++A+GR    S AE ++ EM+ +      + +  ++S Y +   + 
Sbjct: 360 HMGCEPDRASYNIMVDAYGRAGLHSDAEAVFEEMKRLGIAPTMKSHMLLLSAYSRARDVT 419

Query: 322 KASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEE--GFKALELGMKLITTKKVRSSTP 379
           K   ++KEMS NG +P+      +       NL      F  +E   K++   +    T 
Sbjct: 420 KCEAIVKEMSENGVEPDTFVLNSML------NLYGRLGQFTKME---KILAEMENGPCTA 470

Query: 380 WLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAK--INDPNLL 437
            + T   +I I+ + G +   E LF ELK+ N+      + + I AY + K  +    + 
Sbjct: 471 DISTYNILINIYGKAGFLERIEELFVELKERNFKPDVVTWTSRIGAYSRKKLYVKCLEIF 530

Query: 438 RRMILGGARPDAETYSLL 455
             MI  G  PD  T  +L
Sbjct: 531 EEMIDSGCAPDGGTAKVL 548



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 72/323 (22%), Positives = 139/323 (43%), Gaps = 24/323 (7%)

Query: 42  NKRALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQGEKLFC------CIPKDYQNE 95
            ++A++V + + R+R  +P    Y+ ++    K        KLFC      C P    N 
Sbjct: 255 TEQAIDVFQRMKRDR-CKPTTETYNLMINLYGKASKSYMSWKLFCEMRSHQCKP----NI 309

Query: 96  LLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQ 155
             Y  LV A   +G+ + + E  ++++  GH            ++S  G       I   
Sbjct: 310 CTYTALVNAFAREGLCEKAEEIFEQLQEDGH------------IDSRAGYPYGAAEIFSL 357

Query: 156 MKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARL 215
           M+     P  ++++I++              V+ +MKR  + P   S+ +L +A++ AR 
Sbjct: 358 MQHMGCEPDRASYNIMVDAYGRAGLHSDAEAVFEEMKRLGIAPTMKSHMLLLSAYSRARD 417

Query: 216 YTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRS-KSYVL 274
            T  E  V+ + ++    +   L+ ++ LYG L +   +E+I A ++  P      +Y +
Sbjct: 418 VTKCEAIVKEMSENGVEPDTFVLNSMLNLYGRLGQFTKMEKILAEMENGPCTADISTYNI 477

Query: 275 AIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNG 334
            I  +G+   + R EEL++E++          + S I  Y +     K   + +EM  +G
Sbjct: 478 LINIYGKAGFLERIEELFVELKERNFKPDVVTWTSRIGAYSRKKLYVKCLEIFEEMIDSG 537

Query: 335 CKPNAITYRHLALGCFKSNLVEE 357
           C P+  T + L   C   + VE+
Sbjct: 538 CAPDGGTAKVLLSACSSEDQVEQ 560


>gi|125525544|gb|EAY73658.1| hypothetical protein OsI_01545 [Oryza sativa Indica Group]
          Length = 522

 Score = 91.7 bits (226), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 92/423 (21%), Positives = 180/423 (42%), Gaps = 9/423 (2%)

Query: 10  VGSAFQSWMREGFPVHRGEIFHSINRLRKLQLNKRALEVMEWVIRERPYRPKELDYSYLL 69
           V      W+REG      ++   +  LRK + +  ALE+MEW++  +       +++  L
Sbjct: 72  VSRVMNKWVREGREARAADLAKYVKELRKYKRHAHALELMEWMVNTKGMNMSYTNHAIRL 131

Query: 70  EFTIKNHGISQGEKLFCCIPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSIS 129
           +   K  GI   E  F  +P   +N   Y  L+       +   + +  +KM  LG S S
Sbjct: 132 DLIYKVRGIEAAELYFAGLPDPGKNHKTYGALLNCYCSAKMEDKATDIYRKMDELGISSS 191

Query: 130 YLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYS 189
            L  N L+ L    G+ + + ++  +MK   V P   T  +LM   A  + I+ + +V  
Sbjct: 192 TLPINNLMSLYVKIGQHRKVTSLFEEMKVKNVKPDNLTCCLLMSSYAALNKIDTVGEVLK 251

Query: 190 DMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSM-TGNNWSTLDVLIILYGYL 248
           +M+  +V     +Y  LA+ +  A +   AE+ ++ LE  +         D L+ LY  +
Sbjct: 252 EMEEKKVALGWSAYSTLASLYVNANMVEEAESALKKLESLIDVQAGRQPFDFLMSLYASV 311

Query: 249 AKGKDLERIWATVQ-ELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQY 307
               ++ R+W  ++     V + SY+  ++A  ++    R ++++ + +S  +       
Sbjct: 312 GNLSEVNRVWNLIKANFQKVTNTSYLGMLQALYKLNDDDRMKQIYEDWESNYENYDARLT 371

Query: 308 NSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMK 367
           N +   + +NG   +A  L +++   G + ++ T        F  + + +G     L   
Sbjct: 372 NMMTRAHLRNGLTKEAELLWEKVKEKGAEFDSKTCE-----LFLEHYMGKGDMTSALNWV 426

Query: 368 LITTKKVRSSTPWLETTLS-IIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAY 426
              TK  R  +   +  +S  ++ F E  DV  AE     L+ +        Y +L++ Y
Sbjct: 427 ENMTKLPRKKSKLDQEKISCFLKYFEEHKDVEGAERFLNCLRTSGCIDGK-AYESLLRTY 485

Query: 427 VKA 429
           + A
Sbjct: 486 LAA 488


>gi|297835316|ref|XP_002885540.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297331380|gb|EFH61799.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 841

 Score = 91.7 bits (226), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 81/333 (24%), Positives = 154/333 (46%), Gaps = 15/333 (4%)

Query: 98  YNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMK 157
           YN ++      G IK + E  K+M   G   + + FN +I +  + G+   + ++++ MK
Sbjct: 300 YNTMIDTYGKSGQIKEASETFKRMLEEGIVPTTVTFNTMIHVYGNNGQFGEVTSLMKTMK 359

Query: 158 ADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYT 217
               AP   T++IL+ +   +++IE     + +MK + ++P+ VSY  L  A ++  +  
Sbjct: 360 F-HCAPDTRTYNILISLHTKNNDIERAGTYFKEMKGAGLKPDPVSYRTLLYAFSIRHMVK 418

Query: 218 VAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQEL---PNVRSKSYVL 274
            AE  +  ++ +    +  T   L  +Y    + + LE+ W+  +      N+ S+ Y  
Sbjct: 419 EAEELIAEMDDNDVEIDEYTQSALTRMY---IEAEMLEKSWSWFKRFHVAGNMSSEGYSA 475

Query: 275 AIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNG 334
            I+A+G    +S AE +++  Q V +    E YN +I  Y  +   +KA  L + M   G
Sbjct: 476 NIDAYGERGYLSEAERVFICCQEVNKRTVLE-YNVMIKAYGISKSCEKACELFESMMSYG 534

Query: 335 CKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEK 394
             P+  TY  L      +++ ++    LE   K+  T  V    P+     ++I  F + 
Sbjct: 535 VTPDKCTYNTLVQILASADMPDKAKCYLE---KMRETGYVSDCIPY----CAVISSFVKL 587

Query: 395 GDVGNAENLFEELKKANYTKYTFVYNTLIKAYV 427
           G +  AE +++E+ + N      VY  LI A+ 
Sbjct: 588 GQLNMAEEVYKEMVEYNIEPDVVVYGVLINAFA 620



 Score = 60.8 bits (146), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 69/342 (20%), Positives = 146/342 (42%), Gaps = 16/342 (4%)

Query: 61  KELDYSYLLEFT--IKNHGISQGEKLFCCIPKDYQ------NELLYNNLVIACLDKGVIK 112
           +E++   +LE+   IK +GIS+  +  C + +         ++  YN LV       +  
Sbjct: 497 QEVNKRTVLEYNVMIKAYGISKSCEKACELFESMMSYGVTPDKCTYNTLVQILASADMPD 556

Query: 113 LSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILM 172
            +  Y++KMR  G+    + +  +I      G+      + ++M    + P V  + +L+
Sbjct: 557 KAKCYLEKMRETGYVSDCIPYCAVISSFVKLGQLNMAEEVYKEMVEYNIEPDVVVYGVLI 616

Query: 173 KIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTG 232
              A+  N++  M     MK + +  N V Y  L   +        AE     L +S   
Sbjct: 617 NAFADTGNVQQAMSYVEAMKEAGIPENSVIYNSLIKLYTKVGYLDEAEAIYRKLLRSCNE 676

Query: 233 NNWS---TLDVLIILYGYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAE 289
             +    T + +I LY   +  +  E I+ ++++       ++ + +  + +  +   A 
Sbjct: 677 TQYPDVYTSNCMINLYSQRSMVRKAEAIFESMKQRREANEFTFAMMLCMYKKNGRFEEAT 736

Query: 290 ELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGC 349
           ++  +M+ ++ L     YNSV+ +Y  +G   +A    KEM  +G +P+  T++ L    
Sbjct: 737 QIAKQMREMRILTDPLSYNSVLGLYALDGRFKEAVETFKEMVSSGIQPDDSTFKSLGTIL 796

Query: 350 FKSNLVEEGFKALELGMKLITTKKV-RSSTPWLETTLSIIEI 390
            K  + ++  + +E     I  K++ R    W+ T  S++ I
Sbjct: 797 IKLGMSKKAVRKIE----EIRKKEIKRGLELWISTLSSLVGI 834



 Score = 56.6 bits (135), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 81/373 (21%), Positives = 155/373 (41%), Gaps = 52/373 (13%)

Query: 126 HSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLM 185
           + ++ + +N ++ +     + + + ++  +M    + P  ST+  L+ + +     +G +
Sbjct: 182 YELNVIHYNIMLRILGKACKWRYVQSLWDEMIRKGIKPINSTYGTLIDVYS-----KGGL 236

Query: 186 KVYS-----DMKRSEVEPNEVSYCILATAHAVARLYTVAETYV------EALEKSMTGNN 234
           KV++      M +  ++P+EV+  I+   +  AR +  AE +       E    S    +
Sbjct: 237 KVHALCWLGKMSKIGMQPDEVTTGIVLQMYKKAREFQKAEEFFKKWSCDENKADSHVCLS 296

Query: 235 WSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSK-SYVLAIEAFGRIAQVSRAEELWL 293
             T + +I  YG   + K+    +  + E   V +  ++   I  +G   Q      L  
Sbjct: 297 SYTYNTMIDTYGKSGQIKEASETFKRMLEEGIVPTTVTFNTMIHVYGNNGQFGEVTSL-- 354

Query: 294 EMQSVKQLKA--TEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFK 351
            M+++K   A  T  YN +IS++ KN  I++A    KEM   G KP+ ++YR L      
Sbjct: 355 -MKTMKFHCAPDTRTYNILISLHTKNNDIERAGTYFKEMKGAGLKPDPVSYRTLLYAFSI 413

Query: 352 SNLVEEG----------------FKALELGMKLITTKKVRSSTPWL-----------ETT 384
            ++V+E                 +    L    I  + +  S  W            E  
Sbjct: 414 RHMVKEAEELIAEMDDNDVEIDEYTQSALTRMYIEAEMLEKSWSWFKRFHVAGNMSSEGY 473

Query: 385 LSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKINDP--NLLRRMIL 442
            + I+ + E+G +  AE +F   ++ N  +    YN +IKAY  +K  +    L   M+ 
Sbjct: 474 SANIDAYGERGYLSEAERVFICCQEVN-KRTVLEYNVMIKAYGISKSCEKACELFESMMS 532

Query: 443 GGARPDAETYSLL 455
            G  PD  TY+ L
Sbjct: 533 YGVTPDKCTYNTL 545


>gi|302762673|ref|XP_002964758.1| hypothetical protein SELMODRAFT_82857 [Selaginella moellendorffii]
 gi|300166991|gb|EFJ33596.1| hypothetical protein SELMODRAFT_82857 [Selaginella moellendorffii]
          Length = 552

 Score = 91.7 bits (226), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 99/411 (24%), Positives = 168/411 (40%), Gaps = 60/411 (14%)

Query: 58  YRPKELDYSYLLEFTIKNHGISQGEKLF------CCIPKDYQNELLYNNLVIACLDKGVI 111
           +RP  + YS L++   ++H + +G KL        C P    N + YN LV A L +   
Sbjct: 97  FRPTVVTYSTLIDGLCRDHEVDKGCKLLEEMAGRGCAP----NAVTYNTLVNALLGQ--- 149

Query: 112 KLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHIL 171
                                           GR K   ++L QM A+   P + TF ++
Sbjct: 150 --------------------------------GRSKEAFSLLEQMAANGCPPELITFGLI 177

Query: 172 MKIEANDHNIEGLMKVYSD--MKRSEVEPNEVSY-CILATAHAVARLYTVAETYVEALEK 228
           +K    +  IE   +V  +  M  S + P+ +++  +L       R+      +  ALE+
Sbjct: 178 IKGLCKEGEIEAAFRVVDEMFMIESGLSPDVITFNSVLDGLCKEQRILDAHNVFKRALER 237

Query: 229 SMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELP-NVRSKSYVLAIEAFGRIAQVSR 287
                N  T   LI     +AK  +  ++ A + EL     + +Y   ++   ++ ++  
Sbjct: 238 GCR-PNVVTYSTLIDGLSKMAKMDEALQLLAKMVELGCRANTVTYSTVVDGLLKVGRMED 296

Query: 288 AEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLAL 347
           A  +  +M+    L     YN++I  + K   + +A GLL+EM   G  P+ +TY  L  
Sbjct: 297 AVVVLRQMRDAGCLPDAVTYNTLIDGFFKRQRLREAVGLLREMLEAGFHPSVVTYTTLCH 356

Query: 348 GCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEEL 407
           G  +S   +E  + L+           R   P   T  SI++   + G V  A   FE++
Sbjct: 357 GLCRSGRFDEAVEILDY-------MAARGCAPNAITYSSIVDGLCKAGRVTEALGYFEKM 409

Query: 408 KKANYTK-YTFVYNTLIKAYVKA-KINDP-NLLRRMILGGARPDAETYSLL 455
            +      +   Y+ LI    KA KI++    L RMI  G  PD  T+S+L
Sbjct: 410 ARDEVVAPHVIAYSALIDGLCKAGKIDEAYEFLERMIRAGRIPDVVTFSIL 460



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 54/227 (23%), Positives = 99/227 (43%), Gaps = 20/227 (8%)

Query: 242 IILYGYLAKGKDLERIWATVQEL-PNVRSK-------SYVLAIEAFGRIAQVSRAEELWL 293
           ++ YG L  G   +R      +L    R+K       +Y   I+   +  ++  A  L+ 
Sbjct: 30  VVTYGALIDGLGKQRRVKEAYDLFEEARAKGCHPTVVTYNTMIDGLCKCGRIENALTLYD 89

Query: 294 EMQSVKQLKATE-QYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKS 352
           +M      + T   Y+++I   C++  +DK   LL+EM+  GC PNA+TY  L       
Sbjct: 90  DMAIHFGFRPTVVTYSTLIDGLCRDHEVDKGCKLLEEMAGRGCAPNAVTYNTLVNALLGQ 149

Query: 353 NLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEE--LKKA 410
              +E F  LE               P L T   II+   ++G++  A  + +E  + ++
Sbjct: 150 GRSKEAFSLLE-------QMAANGCPPELITFGLIIKGLCKEGEIEAAFRVVDEMFMIES 202

Query: 411 NYTKYTFVYNTLIKAYVKAK--INDPNLLRRMILGGARPDAETYSLL 455
             +     +N+++    K +  ++  N+ +R +  G RP+  TYS L
Sbjct: 203 GLSPDVITFNSVLDGLCKEQRILDAHNVFKRALERGCRPNVVTYSTL 249



 Score = 54.7 bits (130), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 72/319 (22%), Positives = 128/319 (40%), Gaps = 17/319 (5%)

Query: 145 RRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMK-RSEVEPNEVSY 203
           R K   ++  + +A    P V T++ ++        IE  + +Y DM       P  V+Y
Sbjct: 45  RVKEAYDLFEEARAKGCHPTVVTYNTMIDGLCKCGRIENALTLYDDMAIHFGFRPTVVTY 104

Query: 204 CILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQE 263
             L                +E +       N  T + L+     L +G+  E      Q 
Sbjct: 105 STLIDGLCRDHEVDKGCKLLEEMAGRGCAPNAVTYNTLV--NALLGQGRSKEAFSLLEQM 162

Query: 264 LPNVRSK---SYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATE--QYNSVISVYCKNG 318
             N       ++ L I+   +  ++  A  +  EM  ++   + +   +NSV+   CK  
Sbjct: 163 AANGCPPELITFGLIIKGLCKEGEIEAAFRVVDEMFMIESGLSPDVITFNSVLDGLCKEQ 222

Query: 319 FIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSST 378
            I  A  + K     GC+PN +TY  L  G  K   ++E   AL+L  K++     R++T
Sbjct: 223 RILDAHNVFKRALERGCRPNVVTYSTLIDGLSKMAKMDE---ALQLLAKMVEL-GCRANT 278

Query: 379 PWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVK-AKINDP-NL 436
               T   +++   + G + +A  +  +++ A        YNTLI  + K  ++ +   L
Sbjct: 279 VTYST---VVDGLLKVGRMEDAVVVLRQMRDAGCLPDAVTYNTLIDGFFKRQRLREAVGL 335

Query: 437 LRRMILGGARPDAETYSLL 455
           LR M+  G  P   TY+ L
Sbjct: 336 LREMLEAGFHPSVVTYTTL 354



 Score = 50.1 bits (118), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 65/327 (19%), Positives = 127/327 (38%), Gaps = 18/327 (5%)

Query: 48  VMEWVIRERPYRPKELDYSYLLEFTIKNHGISQGEKLF------CCIPKDYQNELLYNNL 101
           V E  + E    P  + ++ +L+   K   I     +F       C P    N + Y+ L
Sbjct: 194 VDEMFMIESGLSPDVITFNSVLDGLCKEQRILDAHNVFKRALERGCRP----NVVTYSTL 249

Query: 102 VIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKV 161
           +        +  +L+ + KM  LG   + + ++ ++      GR +    +LRQM+    
Sbjct: 250 IDGLSKMAKMDEALQLLAKMVELGCRANTVTYSTVVDGLLKVGRMEDAVVVLRQMRDAGC 309

Query: 162 APHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAET 221
            P   T++ L+        +   + +  +M  +   P+ V+Y  L   H + R     E 
Sbjct: 310 LPDAVTYNTLIDGFFKRQRLREAVGLLREMLEAGFHPSVVTYTTLC--HGLCRSGRFDEA 367

Query: 222 YVEALE-KSMTGNNWSTLDVLIILYGYLAKGKDLERIW----ATVQELPNVRSKSYVLAI 276
            VE L+  +  G   + +    I+ G    G+  E +         E+      +Y   I
Sbjct: 368 -VEILDYMAARGCAPNAITYSSIVDGLCKAGRVTEALGYFEKMARDEVVAPHVIAYSALI 426

Query: 277 EAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCK 336
           +   +  ++  A E    M    ++     ++ +I+  C  G ID    L + M+  GC 
Sbjct: 427 DGLCKAGKIDEAYEFLERMIRAGRIPDVVTFSILINGLCDAGRIDTGLELFRGMAERGCV 486

Query: 337 PNAITYRHLALGCFKSNLVEEGFKALE 363
           P+ +TY  L     +++ V+E F   +
Sbjct: 487 PDMVTYATLVDRLCRASRVDEAFDLFQ 513



 Score = 46.2 bits (108), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 39/149 (26%), Positives = 64/149 (42%), Gaps = 10/149 (6%)

Query: 310 VISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLI 369
           +I   CK+  +DKA  L K+M      P+ +TY  L  G  K   V+E +   E      
Sbjct: 1   MIDGLCKSRKVDKAITLFKQMVDKAIYPDVVTYGALIDGLGKQRRVKEAYDLFE------ 54

Query: 370 TTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELK-KANYTKYTFVYNTLIKAYVK 428
              + +   P + T  ++I+   + G + NA  L++++     +      Y+TLI    +
Sbjct: 55  -EARAKGCHPTVVTYNTMIDGLCKCGRIENALTLYDDMAIHFGFRPTVVTYSTLIDGLCR 113

Query: 429 AKINDPN--LLRRMILGGARPDAETYSLL 455
               D    LL  M   G  P+A TY+ L
Sbjct: 114 DHEVDKGCKLLEEMAGRGCAPNAVTYNTL 142



 Score = 42.0 bits (97), Expect = 0.64,   Method: Compositional matrix adjust.
 Identities = 40/187 (21%), Positives = 70/187 (37%), Gaps = 18/187 (9%)

Query: 276 IEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGC 335
           I+   +  +V +A  L+ +M           Y ++I    K   + +A  L +E    GC
Sbjct: 2   IDGLCKSRKVDKAITLFKQMVDKAIYPDVVTYGALIDGLGKQRRVKEAYDLFEEARAKGC 61

Query: 336 KPNAITYRHLALGCFKSNLVEEGFK-----ALELGMKLITTKKVRSSTPWLETTLSIIEI 390
            P  +TY  +  G  K   +E         A+  G +           P + T  ++I+ 
Sbjct: 62  HPTVVTYNTMIDGLCKCGRIENALTLYDDMAIHFGFR-----------PTVVTYSTLIDG 110

Query: 391 FAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKINDP--NLLRRMILGGARPD 448
                +V     L EE+           YNTL+ A +    +    +LL +M   G  P+
Sbjct: 111 LCRDHEVDKGCKLLEEMAGRGCAPNAVTYNTLVNALLGQGRSKEAFSLLEQMAANGCPPE 170

Query: 449 AETYSLL 455
             T+ L+
Sbjct: 171 LITFGLI 177


>gi|297805706|ref|XP_002870737.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297316573|gb|EFH46996.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 680

 Score = 91.7 bits (226), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 90/379 (23%), Positives = 176/379 (46%), Gaps = 30/379 (7%)

Query: 43  KRALEVMEWVIRERPYRPKELDYSYLLEFTI--KNHGISQGEKLF------CCIPKDYQN 94
           +R+L +++WV  E  Y P    Y+ +L   +  K  GI+ G  LF         P  Y  
Sbjct: 138 QRSLALLDWVHEEAKYTPSVFAYNVVLRNVLRAKQFGIAHG--LFDEMRQRALAPDRYT- 194

Query: 95  ELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILR 154
              Y+ L+ +   +G+   +L +++KM     S   ++++ LI L+          +I  
Sbjct: 195 ---YSTLITSFGKEGMFDSALSWLQKMEQDRVSGDLVLYSNLIELSRRLCDYSKAISIFS 251

Query: 155 QMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVAR 214
           ++K   + P +  ++ ++ +       +    +  +M  + V PN VSY  L + +    
Sbjct: 252 RLKRSGITPDLVAYNSMINVYGKAKLFKEARVLIKEMNEAGVSPNTVSYSTLLSVYVENH 311

Query: 215 LYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQEL---PNVRSKS 271
            +  A +    +++     + +T +++I +YG L   K+ +R++ +++++   PNV S +
Sbjct: 312 KFLEALSVFAEMKEVNCPLDLTTCNIMIDVYGQLDMVKEADRLFWSLRKMDIEPNVVSYN 371

Query: 272 YVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMS 331
            +L +  +G       A  L+  MQ     +    YN++I +Y K    +KA+ L++EM 
Sbjct: 372 TILRV--YGEAELFGEAIHLFRLMQRKDIEQNVVTYNTMIKIYGKTMEHEKATNLVQEMQ 429

Query: 332 MNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTL--SIIE 389
             G +PNAITY         S ++    KA +L       +K+RSS   ++  L  ++I 
Sbjct: 430 SRGIEPNAITY---------STIISIWGKAGKLDRAATLFQKLRSSGVEIDQVLYQTMIV 480

Query: 390 IFAEKGDVGNAENLFEELK 408
            +   G +G+A+ L  ELK
Sbjct: 481 AYERVGLMGHAKRLLHELK 499



 Score = 55.8 bits (133), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 65/276 (23%), Positives = 120/276 (43%), Gaps = 49/276 (17%)

Query: 160 KVAPHVSTFHILMK--IEANDHNI-EGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLY 216
           K  P V  ++++++  + A    I  GL   + +M++  + P+  +Y  L T+     ++
Sbjct: 152 KYTPSVFAYNVVLRNVLRAKQFGIAHGL---FDEMRQRALAPDRYTYSTLITSFGKEGMF 208

Query: 217 TVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSKSYVLAI 276
             A ++++ +E+     +       ++LY  L    +L R           R   Y  AI
Sbjct: 209 DSALSWLQKMEQDRVSGD-------LVLYSNLI---ELSR-----------RLCDYSKAI 247

Query: 277 EAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCK 336
             F R+ +     +L               YNS+I+VY K     +A  L+KEM+  G  
Sbjct: 248 SIFSRLKRSGITPDLV-------------AYNSMINVYGKAKLFKEARVLIKEMNEAGVS 294

Query: 337 PNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSI-IEIFAEKG 395
           PN ++Y  L       ++  E  K LE        K+V  + P   TT +I I+++ +  
Sbjct: 295 PNTVSYSTLL------SVYVENHKFLEALSVFAEMKEV--NCPLDLTTCNIMIDVYGQLD 346

Query: 396 DVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKI 431
            V  A+ LF  L+K +       YNT+++ Y +A++
Sbjct: 347 MVKEADRLFWSLRKMDIEPNVVSYNTILRVYGEAEL 382



 Score = 40.4 bits (93), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 38/151 (25%), Positives = 62/151 (41%), Gaps = 9/151 (5%)

Query: 307 YNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGM 366
           YN V+    +      A GL  EM      P+  TY  L     K  + +     L+   
Sbjct: 160 YNVVLRNVLRAKQFGIAHGLFDEMRQRALAPDRYTYSTLITSFGKEGMFDSALSWLQ--- 216

Query: 367 KLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAY 426
                ++ R S   +  + ++IE+     D   A ++F  LK++  T     YN++I  Y
Sbjct: 217 ---KMEQDRVSGDLVLYS-NLIELSRRLCDYSKAISIFSRLKRSGITPDLVAYNSMINVY 272

Query: 427 VKAKINDPN--LLRRMILGGARPDAETYSLL 455
            KAK+      L++ M   G  P+  +YS L
Sbjct: 273 GKAKLFKEARVLIKEMNEAGVSPNTVSYSTL 303



 Score = 38.5 bits (88), Expect = 6.4,   Method: Compositional matrix adjust.
 Identities = 46/239 (19%), Positives = 100/239 (41%), Gaps = 12/239 (5%)

Query: 131 LVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSD 190
           + +N +I +       +   N++++M++  + P+  T+  ++ I      ++    ++  
Sbjct: 403 VTYNTMIKIYGKTMEHEKATNLVQEMQSRGIEPNAITYSTIISIWGKAGKLDRAATLFQK 462

Query: 191 MKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAK 250
           ++ S VE ++V Y  +  A+    L   A+  +  L+     +N      + IL      
Sbjct: 463 LRSSGVEIDQVLYQTMIVAYERVGLMGHAKRLLHELK---LPDNIPRETAITIL---AKA 516

Query: 251 GKDLERIWATVQELPNVRSKS---YVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQY 307
           G   E  W   Q   +   K    +   I  + R  +     E++ +M++      +   
Sbjct: 517 GSTEEATWVFRQAFESGEVKDISVFGCMINLYSRNQRYVNVIEVFEKMRTAGYFPDSNAI 576

Query: 308 NSVISVYCKNGFIDKASGLLKEMSMNGCK-PNAITYRHLALGCFKSN--LVEEGFKALE 363
             V++ Y K    +KA  + +EM   GC  P+ + ++ L+L   K +  +VE  F+ LE
Sbjct: 577 AMVLNAYGKQREFEKADTVYREMQEEGCVFPDEVHFQMLSLYSSKKDFEMVESLFERLE 635


>gi|255540825|ref|XP_002511477.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223550592|gb|EEF52079.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 754

 Score = 91.7 bits (226), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 90/375 (24%), Positives = 163/375 (43%), Gaps = 58/375 (15%)

Query: 87  CIPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNS--SPG 144
           C P    NE +Y  ++     +G+++ S E  ++M    H +   VF+   ++NS    G
Sbjct: 138 CKP----NEHIYTIIISLLGREGLLEKSTEIFEEMPT--HGVPRSVFSYTALINSYGRHG 191

Query: 145 RRKTIPNILRQMKADKVAPHVSTFHILMKIEANDH-NIEGLMKVYSDMKRSEVEPNEVSY 203
           + +    +L +MK +KV P + T++ ++   A    N EGL+ ++++M+   ++P+ ++Y
Sbjct: 192 QYEVSLELLERMKKEKVTPSILTYNTVINSCARGGLNWEGLLSLFAEMRHEGIQPDIITY 251

Query: 204 CILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQE 263
             L  A A   L                                   G + E ++ T+ E
Sbjct: 252 NTLLNACANRGL-----------------------------------GDEAEMVFRTMNE 276

Query: 264 ---LPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFI 320
              +P++   +Y   +E FG++ ++ +  EL  EM+S   L     YN ++  Y   G I
Sbjct: 277 GGMVPDI--TTYRNLVETFGKLNKLEKVSELLKEMESSGNLPDISSYNVLLEAYASKGDI 334

Query: 321 DKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPW 380
             A G+ ++M    C PNA+TY  L L  +  +   +  + L L M      KV ++ P 
Sbjct: 335 RHAMGVFRQMQEARCVPNAVTYSML-LNLYGGHGRYDDVRELFLEM------KVSNTEPD 387

Query: 381 LETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKINDP--NLLR 438
           + T   +IE+F E G       LF ++ + N       Y  LI A  K  +++    +L 
Sbjct: 388 VGTYNVLIEVFGEGGYFKEVVTLFHDMVEENVEPNMGTYEGLIYACGKGGLHEDAKKILL 447

Query: 439 RMILGGARPDAETYS 453
            M   G  P  + Y+
Sbjct: 448 HMDEKGIVPSTKAYT 462



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 67/311 (21%), Positives = 131/311 (42%), Gaps = 39/311 (12%)

Query: 98  YNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMK 157
           YN L+ A   KG I+ ++   ++M+      + + ++ L+ L    GR   +  +  +MK
Sbjct: 321 YNVLLEAYASKGDIRHAMGVFRQMQEARCVPNAVTYSMLLNLYGGHGRYDDVRELFLEMK 380

Query: 158 ADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSY------CILATAH- 210
                P V T+++L+++       + ++ ++ DM    VEPN  +Y      C     H 
Sbjct: 381 VSNTEPDVGTYNVLIEVFGEGGYFKEVVTLFHDMVEENVEPNMGTYEGLIYACGKGGLHE 440

Query: 211 ----------------------AVARLYTVAETYVEALEKSMTGNNWS---TLDVLIILY 245
                                  V   Y  A +Y EAL    T N      T++    L 
Sbjct: 441 DAKKILLHMDEKGIVPSTKAYTGVIEAYGQAASYEEALVMFNTMNEMGSKPTVETYNSLI 500

Query: 246 GYLAKG---KDLERIWATVQELPNVRSK-SYVLAIEAFGRIAQVSRAEELWLEMQSVKQL 301
              A+G   K+ E I   + E    R + S+   IE + +  Q   A + ++E++  +  
Sbjct: 501 NMFARGGLYKESEAIMWKMGESGVARDRDSFNGVIEGYRQGGQFEEAIKTYVELEKARFQ 560

Query: 302 KATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKA 361
                + +V+SVYC  G +D++    +E+  +G  P+ + Y  +     +SN  ++ ++ 
Sbjct: 561 PDERTFEAVLSVYCTAGLVDESEEQFREIRASGILPSVMCYCMMIAVYARSNRWDDAYEV 620

Query: 362 LELGMKLITTK 372
           L+   +++T K
Sbjct: 621 LD---EMVTNK 628


>gi|255553773|ref|XP_002517927.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223542909|gb|EEF44445.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 507

 Score = 91.3 bits (225), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 94/458 (20%), Positives = 198/458 (43%), Gaps = 9/458 (1%)

Query: 1   IERLPRGEPVGSAFQSWMREGFPVHRGEIFHSINRLRKLQLNKRALEVMEWVIRERPYRP 60
           I R P+ E +      W+ EG  V +  +   ++ ++  +    ALE+  W+   R +  
Sbjct: 56  IVRDPK-ESIIPVLNQWVSEGHTVGKALLQSLVHLMKGYKRFNHALEMSHWMTDCRYFSL 114

Query: 61  KELDYSYLLEFTIKNHGISQGEKLFCCIPKDYQNELLYNNLVIACLDKGVIKLSLEYMKK 120
              D +  LE   + +G +  E  F  I    ++  +Y  L+   + +  ++ +   +++
Sbjct: 115 SPSDVAVRLELIYRVYGSAHAEMYFEKISDKLKSGNVYGALLSGYVRENSVQKAEAVLQE 174

Query: 121 MRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHN 180
           MR  G + S   +N +I L +  G  + I  +  +M+ + +     T   LM       +
Sbjct: 175 MREKGIATSSFPYNIMINLYAQNGAFEKIDILKEEMERNGIPQDKYTMRNLMAAYVAASD 234

Query: 181 IEGLMKVYSDMK-RSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSM-TGNNWSTL 238
           I G+ ++ + ++   ++     +Y + A+ +    L   A   +  +E++M  G   S  
Sbjct: 235 ISGMERILNQLETHPQLGHGWQAYSVAASGYLKVGLIEKALKMLRKMEETMPIGKKTSAF 294

Query: 239 DVLIILYGYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSV 298
           + L+ LY    +  +L R+W + + L  V+   +   I +  ++  +  AE ++ E +S 
Sbjct: 295 NYLLTLYAKTGRKDELYRVWNSYKPLAEVKETQFCCMISSLEKVDDIEGAERIFEEWESQ 354

Query: 299 KQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEG 358
             +      N ++  YC+ G   KA     + +  G  P A T+  +A+     N +   
Sbjct: 355 CMMYDFRVLNKLLLAYCRKGLYTKAE-AAFKKAAEGRTPYASTWITMAMSYIGQNQMS-- 411

Query: 359 FKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFV 418
            KA+E+  K I+  + +   P   T  + ++   E+GDV   E + + LK         +
Sbjct: 412 -KAVEMLKKAISVSR-KGWKPNPITLTTCLDYLEEQGDVEGIEEIVKSLKSTESLTRD-I 468

Query: 419 YNTLIKAYVKAKINDPNLLRRMILGGARPDAETYSLLK 456
           Y+ L++ Y  A I    ++ +M +     D ET+ +L+
Sbjct: 469 YHRLVRTYTAAGIPVTKVIDKMKMDNIAADEETHKILE 506


>gi|357154512|ref|XP_003576808.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g79540-like [Brachypodium distachyon]
          Length = 801

 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 99/428 (23%), Positives = 173/428 (40%), Gaps = 74/428 (17%)

Query: 85  FCCIPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKM---RVLGHSISYLVFNRLIILNS 141
           F C P  +    +YN +    +D+GVI L+L    +M     L +S +Y      I+L  
Sbjct: 173 FDCRPTAF----VYNAVFQVLVDRGVILLALALYNRMVSSGCLPNSTTY------IVLMD 222

Query: 142 SPGRRKTIPNILR---QMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEP 198
              +R    + L+   +M    + P V  + +L+    N+  IE   ++   MK +   P
Sbjct: 223 GLCKRGMAVDALKMFDEMLERGIVPDVKIYTVLLSSLCNEGRIEDAGRLLCSMKENGCPP 282

Query: 199 NEVSY------------------------------------CILATAHAVARLYTVAETY 222
           +EV+Y                                    C++       R       Y
Sbjct: 283 DEVTYTVFLSGLCKAGRVDEAFHRFELLQDGGFTLGLIGYSCLIDGLFQAGRFDEGLSYY 342

Query: 223 VEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQE---LPNVRSKSYVLAIEAF 279
            E L KS++  + +   +LI  +    + KD   +   +++   +P+  +  Y   ++A 
Sbjct: 343 TEMLGKSIS-PDITLYTILIRRFAEAGRTKDAFLLLDEMKDKGFVPD--TFCYNTLLKAL 399

Query: 280 GRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNA 339
             +  + RA+ L  EM     +  +  +N +I   CK G IDKA  +  EM  +GC P  
Sbjct: 400 FDVGNIDRAQSLMSEMLQNNVVLDSTTHNIMICGLCKKGLIDKAMQVFDEMGEHGCHPTV 459

Query: 340 ITYRHLALGCFKSNLVEEG---FKALELG------MKL-ITTKKVRSSTPWLETTLSIIE 389
           +TY  L  G +++ ++EE    F  +E+G      ++L +   +VR +    E+   +++
Sbjct: 460 MTYNALIDGLYRAGMLEEARMLFHKMEMGNNPSLFLRLTLGANQVRDT----ESLRKLVD 515

Query: 390 IFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKINDP--NLLRRMILGGARP 447
              + G V  A  L   + ++        YNTLI    KAK  D    L + + L G  P
Sbjct: 516 GMCQSGQVLKAYKLLRGIIESGVVPDVVTYNTLINGLCKAKNLDGALRLFKELQLKGISP 575

Query: 448 DAETYSLL 455
           D  TY  L
Sbjct: 576 DEITYGTL 583



 Score = 43.1 bits (100), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 66/293 (22%), Positives = 112/293 (38%), Gaps = 60/293 (20%)

Query: 98  YNNLVIACLDKGVIKLSLEYMKKMRVLGHSIS--YLVFNRLIILNSSPGRRKTIPNILRQ 155
           Y+ L+      G     L Y  +M  LG SIS    ++  LI   +  GR K    +L +
Sbjct: 322 YSCLIDGLFQAGRFDEGLSYYTEM--LGKSISPDITLYTILIRRFAEAGRTKDAFLLLDE 379

Query: 156 MKADKVAPHVSTFHILMK------------------------IEANDHNI-------EGL 184
           MK     P    ++ L+K                        +++  HNI       +GL
Sbjct: 380 MKDKGFVPDTFCYNTLLKALFDVGNIDRAQSLMSEMLQNNVVLDSTTHNIMICGLCKKGL 439

Query: 185 ----MKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDV 240
               M+V+ +M      P  ++Y  L      A +   A      +E    GNN S    
Sbjct: 440 IDKAMQVFDEMGEHGCHPTVMTYNALIDGLYRAGMLEEARMLFHKME---MGNNPS---- 492

Query: 241 LIILYGYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQ 300
              L+  L  G +  R   ++++L           ++   +  QV +A +L   +     
Sbjct: 493 ---LFLRLTLGANQVRDTESLRKL-----------VDGMCQSGQVLKAYKLLRGIIESGV 538

Query: 301 LKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSN 353
           +     YN++I+  CK   +D A  L KE+ + G  P+ ITY  L  G ++++
Sbjct: 539 VPDVVTYNTLINGLCKAKNLDGALRLFKELQLKGISPDEITYGTLIDGLWRAH 591



 Score = 42.7 bits (99), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 56/232 (24%), Positives = 83/232 (35%), Gaps = 35/232 (15%)

Query: 265 PNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKAS 324
           P+   ++ VLA  + GR  +   A E +  M           YN+V  V    G I  A 
Sbjct: 143 PSAAFRALVLAHSSAGRHQE---AVEAFSRMGDFDCRPTAFVYNAVFQVLVDRGVILLAL 199

Query: 325 GLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFK----ALELGM-------------- 366
            L   M  +GC PN+ TY  L  G  K  +  +  K     LE G+              
Sbjct: 200 ALYNRMVSSGCLPNSTTYIVLMDGLCKRGMAVDALKMFDEMLERGIVPDVKIYTVLLSSL 259

Query: 367 ----------KLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYT 416
                     +L+ + K     P   T    +    + G V  A + FE L+   +T   
Sbjct: 260 CNEGRIEDAGRLLCSMKENGCPPDEVTYTVFLSGLCKAGRVDEAFHRFELLQDGGFTLGL 319

Query: 417 FVYNTLIKAYVKAKINDPNL--LRRMILGGARPDAETYSLL--KLAEQFQKK 464
             Y+ LI    +A   D  L     M+     PD   Y++L  + AE  + K
Sbjct: 320 IGYSCLIDGLFQAGRFDEGLSYYTEMLGKSISPDITLYTILIRRFAEAGRTK 371


>gi|255553777|ref|XP_002517929.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223542911|gb|EEF44447.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 446

 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 90/399 (22%), Positives = 181/399 (45%), Gaps = 11/399 (2%)

Query: 14  FQSWMREGFPVHRGEIFHSINRLRKLQLNKRALEVMEWVIRERPYRPKELDYSYLLEFTI 73
              W+ EG  V +  +   +N ++       AL++ +W+           D    LE   
Sbjct: 28  LDQWVNEGNTVRKALLRSLVNLMKGFNRFNHALQISQWMADRPNLTLSPSDVVVRLELVH 87

Query: 74  KNHGISQGEKLFCCIPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVF 133
           + +G +  EK F  +P  ++   +Y  L+   + +  ++ +   M++MR  G + S   +
Sbjct: 88  RIYGSAHAEKYFEKLPDKFKCREVYCALLSGYVQESSVRKAEAIMEEMRAKGMANSCFPY 147

Query: 134 NRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKR 193
           N LI L    G  + I  ++++M+ + V     T   LM       NI G+ ++ + +++
Sbjct: 148 NLLINLYPKNGDYEKINMLIQEMETNGVVRGAYTMSNLMAAYVAASNISGMERILNQIEK 207

Query: 194 SEVEPNEVS-YCILATAHAVARLYTVAETYVEALEKSMT-GNNWSTLDVLIILYGYLAKG 251
                N+   Y + A+ +    L   A T +  LE  M      S  D+L+ LYG   K 
Sbjct: 208 DPQLGNDWRVYSVAASGYLKFGLIEKALTMLRKLEDVMPLEKKTSAFDILVTLYGKTGKR 267

Query: 252 KDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVI 311
            +L  +W T + L  ++  S +  I +  ++  +  AE+++ E +S   +      N+++
Sbjct: 268 DELYLVWNTYKPLIELKETSVMTMISSLSKLDDIKGAEKIFREWESQCMMYDFRVLNTLL 327

Query: 312 SVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKL--I 369
             YC+ G + KA   +++ + +   P A ++  LA+G  + N   + +KA+E+  K   I
Sbjct: 328 FAYCRKGLLKKAEAAVEKAAKDRT-PCASSWGILAMGYIEHN---QMYKAVEMLKKALSI 383

Query: 370 TTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELK 408
           + +  R ++  L   L+ +E   ++GDV   E + + LK
Sbjct: 384 SGQGWRPNSMTLTACLNFLE---KQGDVEGVEEVTKLLK 419


>gi|357499777|ref|XP_003620177.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355495192|gb|AES76395.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 612

 Score = 90.9 bits (224), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 82/367 (22%), Positives = 158/367 (43%), Gaps = 43/367 (11%)

Query: 94  NELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNIL 153
           N ++YN ++ +     ++  + +   +M   G S   + ++ LI      G+      + 
Sbjct: 195 NVVMYNTIIDSMCKVKLVNEAFDLYSEMVSKGISPDVVTYSALISGFCILGKLNDAIGLF 254

Query: 154 RQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVA 213
            +M ++++ P V TF IL+     +  ++    V + M +  ++P+ V+YC L   + + 
Sbjct: 255 NKMISEEINPDVYTFSILVDGFCKEGRVKEAKNVLAMMMKQGIKPDVVTYCSLMDGYCLV 314

Query: 214 RLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSKSYV 273
           +    A++                      ++  +A+G     + A VQ        SY 
Sbjct: 315 KQVNKAKS----------------------IFNTMAQGG----VTANVQ--------SYN 340

Query: 274 LAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMN 333
           + I  F +I +V  A  L+ EM     +     YNS+I   CK+G I  A  L+ EM   
Sbjct: 341 IMINGFCKIKKVDEAMNLFKEMHCKNIIPDVVTYNSLIDGLCKSGKISYALKLVDEMHDR 400

Query: 334 GCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAE 393
           G   + ITY  +     K++ V++        + L+T  K     P + T   +I+   +
Sbjct: 401 GVPHDKITYNSILDALCKNHQVDKA-------IALLTKMKDEGIQPDMYTYTILIDGLCK 453

Query: 394 KGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKINDP--NLLRRMILGGARPDAET 451
            G + +A+N+FE+L    Y    + Y  +I+ +    + D    LL +M   G  P+A+T
Sbjct: 454 GGRLKDAQNIFEDLLVKGYNITVYTYTVMIQGFCDNDLFDKALALLSKMEDNGCIPNAKT 513

Query: 452 YSLLKLA 458
           Y ++ L+
Sbjct: 514 YEIIILS 520



 Score = 65.5 bits (158), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 79/355 (22%), Positives = 142/355 (40%), Gaps = 53/355 (14%)

Query: 133 FNRLIILNSSP-----GR----------RKTIPNILRQMKADKVAPHVSTFHILMKIEAN 177
           FNR++ +N +P     G+           +T  ++ R+M+ + +A  + TF+IL+   + 
Sbjct: 44  FNRILNINPTPPIFEFGKILGSLVKINCYQTAISLHREMEFNGIASDLVTFNILINCFSQ 103

Query: 178 DHNIEGLMKVYSDMKRSEVEPNEVS-------YCILATAHAVARLYTVAETYVEALEKSM 230
             +      V++++ +   EPN ++        C+    H     +         L K  
Sbjct: 104 LGHTHFSFSVFANILKKGYEPNAITLTTLIKGLCLKGQIHQALHFHDKVVALGFHLNK-- 161

Query: 231 TGNNWSTLDVLIILYGYLAKG-KDLERIWATVQELPNVRSK-------SYVLAIEAFGRI 282
                       + YG L  G   + +  A +Q L  V  K        Y   I++  ++
Sbjct: 162 ------------VCYGTLINGLCKVGQTSAALQLLRRVDGKLVQPNVVMYNTIIDSMCKV 209

Query: 283 AQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITY 342
             V+ A +L+ EM S         Y+++IS +C  G ++ A GL  +M      P+  T+
Sbjct: 210 KLVNEAFDLYSEMVSKGISPDVVTYSALISGFCILGKLNDAIGLFNKMISEEINPDVYTF 269

Query: 343 RHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAEN 402
             L  G  K   V+E    L + MK       +   P + T  S+++ +     V  A++
Sbjct: 270 SILVDGFCKEGRVKEAKNVLAMMMK-------QGIKPDVVTYCSLMDGYCLVKQVNKAKS 322

Query: 403 LFEELKKANYTKYTFVYNTLIKAYVKAKINDP--NLLRRMILGGARPDAETYSLL 455
           +F  + +   T     YN +I  + K K  D   NL + M      PD  TY+ L
Sbjct: 323 IFNTMAQGGVTANVQSYNIMINGFCKIKKVDEAMNLFKEMHCKNIIPDVVTYNSL 377



 Score = 49.3 bits (116), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 40/207 (19%), Positives = 89/207 (42%), Gaps = 7/207 (3%)

Query: 151 NILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAH 210
           +I   M    V  +V +++I++        ++  M ++ +M    + P+ V+Y  L    
Sbjct: 322 SIFNTMAQGGVTANVQSYNIMINGFCKIKKVDEAMNLFKEMHCKNIIPDVVTYNSLIDGL 381

Query: 211 AVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSK 270
             +   + A   V+ +      ++  T + ++     L K   +++  A + ++ +   +
Sbjct: 382 CKSGKISYALKLVDEMHDRGVPHDKITYNSIL---DALCKNHQVDKAIALLTKMKDEGIQ 438

Query: 271 ----SYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGL 326
               +Y + I+   +  ++  A+ ++ ++           Y  +I  +C N   DKA  L
Sbjct: 439 PDMYTYTILIDGLCKGGRLKDAQNIFEDLLVKGYNITVYTYTVMIQGFCDNDLFDKALAL 498

Query: 327 LKEMSMNGCKPNAITYRHLALGCFKSN 353
           L +M  NGC PNA TY  + L  F+ +
Sbjct: 499 LSKMEDNGCIPNAKTYEIIILSLFEKD 525


>gi|302808965|ref|XP_002986176.1| hypothetical protein SELMODRAFT_182249 [Selaginella moellendorffii]
 gi|300146035|gb|EFJ12707.1| hypothetical protein SELMODRAFT_182249 [Selaginella moellendorffii]
          Length = 609

 Score = 90.9 bits (224), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 98/439 (22%), Positives = 186/439 (42%), Gaps = 38/439 (8%)

Query: 33  INRLRKLQLNKRALEVMEWVIRERP-YRPKELDYSYLLEFTIKNHGISQGEKLFCCIPKD 91
           +N L+  +L   AL    W     P +      ++ LL+  ++     +   LF      
Sbjct: 50  VNSLKDAKL---ALAFFRWAPASIPGFSHTAFSWNSLLQVLVRCKKHREAGDLF------ 100

Query: 92  YQNELL---------YNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSS 142
            ++ELL         YN ++    + G +  +LE +++M+  G +        +I   ++
Sbjct: 101 -RSELLASCEPDVCSYNIVISGFCNAGDLHAALELLEEMKSAGFAPDAFTHTPIITAMAN 159

Query: 143 PGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVS 202
            G      + LR M  D   P+V T+  L+   A    +E  MK+  +M+     PN V+
Sbjct: 160 AGDLDGAMDHLRSMGCD---PNVVTYTALIAAFARAKKLEEAMKLLEEMRERGCPPNLVT 216

Query: 203 YCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILY---GYLAKGKDLERIWA 259
           Y +L  A     +   A+  V+ + +     N  T + L+  +   G +   + L  I  
Sbjct: 217 YNVLVDALCKLSMVGAAQDVVKKMIEGGFAPNVMTFNSLVDGFCKRGNVDDARKLLGIMV 276

Query: 260 TVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGF 319
                PNV   +Y   I+   +  +   A+E+  EM++         Y+++I   CK   
Sbjct: 277 AKGMRPNV--VTYSALIDGLCKSQKFLEAKEVLEEMKTRGVTPDAFTYSALIHGLCKADK 334

Query: 320 IDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTP 379
           I++A  +L+ M+ +GC P+ + Y  +     KS  + E  K L+        +K R S P
Sbjct: 335 IEEAEQMLRRMAGSGCTPDVVVYSSIIHAFCKSGKLLEAQKTLQ------EMRKQRKS-P 387

Query: 380 WLETTLSIIEIFAEKGDVGNAENLFEELKKA-NYTKYTFVYNTLIKAYVKAK--INDPNL 436
            + T  ++I+   + G +  A+ + E+++++ +       Y+T+I    K+   +    L
Sbjct: 388 DVVTYNTVIDGLCKLGKIAEAQVILEQMQESGDVLPDVVTYSTVINGLCKSDMLVEAQKL 447

Query: 437 LRRMILGGARPDAETYSLL 455
           L RM   G  PD  TY+ +
Sbjct: 448 LDRMCKAGCNPDVVTYTTI 466



 Score = 69.3 bits (168), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 84/383 (21%), Positives = 155/383 (40%), Gaps = 58/383 (15%)

Query: 94  NELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNIL 153
           N + YN LV A     ++  + + +KKM   G + + + FN L+      G       +L
Sbjct: 213 NLVTYNVLVDALCKLSMVGAAQDVVKKMIEGGFAPNVMTFNSLVDGFCKRGNVDDARKLL 272

Query: 154 RQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVA 213
             M A  + P+V T+  L+             +V  +MK   V P+  +Y  L   H + 
Sbjct: 273 GIMVAKGMRPNVVTYSALIDGLCKSQKFLEAKEVLEEMKTRGVTPDAFTYSALI--HGLC 330

Query: 214 RLYTVAETYVEALEKSMTGNNWSTLDVLI---ILYGYLAKGKDLERIWATVQELPNVRSK 270
           +   + E   E + + M G+   T DV++   I++ +   GK LE    T+QE+   R  
Sbjct: 331 KADKIEEA--EQMLRRMAGSGC-TPDVVVYSSIIHAFCKSGKLLE-AQKTLQEMRKQRKS 386

Query: 271 ----SYVLAIEAFGRIAQVSRAEELWLEMQS------------------------VKQLK 302
               +Y   I+   ++ +++ A+ +  +MQ                         V+  K
Sbjct: 387 PDVVTYNTVIDGLCKLGKIAEAQVILEQMQESGDVLPDVVTYSTVINGLCKSDMLVEAQK 446

Query: 303 ATEQ------------YNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCF 350
             ++            Y ++I   CK G +++A  LL+ M   GC PN +TY  L  G  
Sbjct: 447 LLDRMCKAGCNPDVVTYTTIIDGLCKCGRLEEAEYLLQGMKRAGCAPNVVTYTTLISGLC 506

Query: 351 KSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELK-- 408
           K+  V+E  + +E         +     P L T  +++      G +  A+ L + +K  
Sbjct: 507 KARKVDEAERVME-------EMRNAGCPPNLVTYNTMVNGLCVSGRIKEAQQLVQRMKDG 559

Query: 409 KANYTKYTFVYNTLIKAYVKAKI 431
           +A  +     Y T++ A + + +
Sbjct: 560 RAECSPDAATYRTIVNALMSSDL 582



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 74/331 (22%), Positives = 145/331 (43%), Gaps = 27/331 (8%)

Query: 59  RPKELDYSYLLEFTIKNHGISQGEKLF------CCIPKDYQNELLYNNLVIACLDKGVIK 112
           RP  + YS L++   K+    + +++          P  +    L + L  A  DK  I+
Sbjct: 281 RPNVVTYSALIDGLCKSQKFLEAKEVLEEMKTRGVTPDAFTYSALIHGLCKA--DK--IE 336

Query: 113 LSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILM 172
            + + +++M   G +   +V++ +I      G+       L++M+  + +P V T++ ++
Sbjct: 337 EAEQMLRRMAGSGCTPDVVVYSSIIHAFCKSGKLLEAQKTLQEMRKQRKSPDVVTYNTVI 396

Query: 173 KIEANDHNIEGLMKVYSDMKRS-EVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMT 231
                   I     +   M+ S +V P+ V+Y  +      + +   A+  ++ + K+  
Sbjct: 397 DGLCKLGKIAEAQVILEQMQESGDVLPDVVTYSTVINGLCKSDMLVEAQKLLDRMCKA-- 454

Query: 232 GNNWSTLDVLIILYGYLAKGKDLERIWATVQEL------PNVRSKSYVLAIEAFGRIAQV 285
           G N   +    I+ G    G+ LE     +Q +      PNV   +Y   I    +  +V
Sbjct: 455 GCNPDVVTYTTIIDGLCKCGR-LEEAEYLLQGMKRAGCAPNV--VTYTTLISGLCKARKV 511

Query: 286 SRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNG---CKPNAITY 342
             AE +  EM++         YN++++  C +G I +A  L++ M  +G   C P+A TY
Sbjct: 512 DEAERVMEEMRNAGCPPNLVTYNTMVNGLCVSGRIKEAQQLVQRMK-DGRAECSPDAATY 570

Query: 343 RHLALGCFKSNLVEEGFKALELGMKLITTKK 373
           R +      S+LV+E  + LE  MK  T+ +
Sbjct: 571 RTIVNALMSSDLVQEAEQLLE-QMKSTTSSQ 600


>gi|110740599|dbj|BAE98404.1| hypothetical protein [Arabidopsis thaliana]
          Length = 546

 Score = 90.9 bits (224), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 88/378 (23%), Positives = 174/378 (46%), Gaps = 28/378 (7%)

Query: 43  KRALEVMEWVIRERPYRPKELDYSYLL-------EFTIKNHGISQGEKLFCCIPKDYQNE 95
           +R+L +++WV  E  Y P    Y+ +L       +F I  HG+    +     P  Y   
Sbjct: 4   QRSLALLDWVHEEAKYTPSVFAYNVVLRNVLRAKQFDIA-HGLFDEMRQRALAPDRYT-- 60

Query: 96  LLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQ 155
             Y+ L+ +   +G+   +L +++KM     S   ++++ LI L+          +I  +
Sbjct: 61  --YSTLITSFGKEGMFDSALSWLQKMEQDRVSGDLVLYSNLIELSRRLCDYSKAISIFSR 118

Query: 156 MKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARL 215
           +K   + P +  ++ ++ +            +  +M  + V PN VSY  L + +     
Sbjct: 119 LKRSGITPDLVAYNSMINVYGKAKLFREARLLIKEMNEAGVLPNTVSYSTLLSVYVENHK 178

Query: 216 YTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQEL---PNVRSKSY 272
           +  A +    +++     + +T +++I +YG L   K+ +R++ +++++   PNV S + 
Sbjct: 179 FLEALSVFAEMKEVNCALDLTTCNIMIDVYGQLDMVKEADRLFWSLRKMDIEPNVVSYNT 238

Query: 273 VLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSM 332
           +L +  +G       A  L+  MQ     +    YN++I +Y K    +KA+ L++EM  
Sbjct: 239 ILRV--YGEAELFGEAIHLFRLMQRKDIEQNVVTYNTMIKIYGKTMEHEKATNLVQEMQS 296

Query: 333 NGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTL--SIIEI 390
            G +PNAITY         S ++    KA +L       +K+RSS   ++  L  ++I  
Sbjct: 297 RGIEPNAITY---------STIISIWGKAGKLDRAATLFQKLRSSGVEIDQVLYQTMIVA 347

Query: 391 FAEKGDVGNAENLFEELK 408
           +   G +G+A+ L  ELK
Sbjct: 348 YERVGLMGHAKRLLHELK 365



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 67/326 (20%), Positives = 133/326 (40%), Gaps = 64/326 (19%)

Query: 160 KVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVA 219
           K  P V  ++++++        +    ++ +M++  + P+  +Y  L T+     ++  A
Sbjct: 18  KYTPSVFAYNVVLRNVLRAKQFDIAHGLFDEMRQRALAPDRYTYSTLITSFGKEGMFDSA 77

Query: 220 ETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSKSYVLAIEAF 279
            ++++ +E+     +       ++LY  L    +L R           R   Y  AI  F
Sbjct: 78  LSWLQKMEQDRVSGD-------LVLYSNLI---ELSR-----------RLCDYSKAISIF 116

Query: 280 GRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNA 339
            R+ +     +L               YNS+I+VY K     +A  L+KEM+  G  PN 
Sbjct: 117 SRLKRSGITPDLV-------------AYNSMINVYGKAKLFREARLLIKEMNEAGVLPNT 163

Query: 340 ITYRHL-------------------------ALGCFKSNLVEEGFKALEL---GMKLITT 371
           ++Y  L                         AL     N++ + +  L++     +L  +
Sbjct: 164 VSYSTLLSVYVENHKFLEALSVFAEMKEVNCALDLTTCNIMIDVYGQLDMVKEADRLFWS 223

Query: 372 KKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKI 431
            +     P + +  +I+ ++ E    G A +LF  +++ +  +    YNT+IK Y K   
Sbjct: 224 LRKMDIEPNVVSYNTILRVYGEAELFGEAIHLFRLMQRKDIEQNVVTYNTMIKIYGKTME 283

Query: 432 ND--PNLLRRMILGGARPDAETYSLL 455
           ++   NL++ M   G  P+A TYS +
Sbjct: 284 HEKATNLVQEMQSRGIEPNAITYSTI 309



 Score = 39.3 bits (90), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 46/239 (19%), Positives = 101/239 (42%), Gaps = 12/239 (5%)

Query: 131 LVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSD 190
           + +N +I +       +   N++++M++  + P+  T+  ++ I      ++    ++  
Sbjct: 269 VTYNTMIKIYGKTMEHEKATNLVQEMQSRGIEPNAITYSTIISIWGKAGKLDRAATLFQK 328

Query: 191 MKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAK 250
           ++ S VE ++V Y  +  A+    L   A+  +  L+     +N      + IL      
Sbjct: 329 LRSSGVEIDQVLYQTMIVAYERVGLMGHAKRLLHELK---LPDNIPRETAITIL---AKA 382

Query: 251 GKDLERIWATVQELPNVRSKS---YVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQY 307
           G+  E  W   Q   +   K    +   I  + R  +     E++ +M++      +   
Sbjct: 383 GRTEEATWVFRQAFESGEVKDISVFGCMINLYSRNQRYVNVIEVFEKMRTAGYFPDSNVI 442

Query: 308 NSVISVYCKNGFIDKASGLLKEMSMNGCK-PNAITYRHLALGCFKSN--LVEEGFKALE 363
             V++ Y K    +KA  + +EM   GC  P+ + ++ L+L   K +  +VE  F+ LE
Sbjct: 443 AMVLNAYGKQREFEKADTVYREMQEEGCVFPDEVHFQMLSLYSSKKDFEMVESLFQRLE 501


>gi|302143279|emb|CBI21840.3| unnamed protein product [Vitis vinifera]
          Length = 446

 Score = 90.9 bits (224), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 104/453 (22%), Positives = 191/453 (42%), Gaps = 68/453 (15%)

Query: 13  AFQSWMREGFPVHRGEIFHSINRLRKLQLNKRALEVMEWVIRERPYRPKELDYSYLLEFT 72
           A + W +EG  + + ++   I +LR  +    ALE+ EW+  +  +     D +  L+  
Sbjct: 54  ALEQWRKEGRSIKQQDLHRLIRKLRTFKRYNHALEIYEWIRDKFYFDISPGDVAIQLDLI 113

Query: 73  IKNHGISQGEKLFCCIPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLV 132
            K HG+ Q EK F   P   ++  +Y  L+     K  ++ +   M++MR +G  +  L 
Sbjct: 114 SKVHGLEQAEKYFNETPNSLRSFQVYGALLNCYSQKKSLEKAEAIMQEMRDMGF-VKTLS 172

Query: 133 FNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEG----LMKVY 188
           +N ++ L S  G+ + + N++++M+ + +     T+ I +       ++EG    LMK+ 
Sbjct: 173 YNVMLGLYSRLGKHEKLDNLMQEMEENGIGLDSFTYCIRLNAYCATSDMEGMEKLLMKLE 232

Query: 189 SDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYL 248
           +D     V  +  +Y + A  +  A L    E  VE L+ S                  L
Sbjct: 233 TD---PAVNSDWNAYIVAANGYLKADL---KEKAVEMLKNS------------------L 268

Query: 249 AKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYN 308
            K  D++    T +E                            WL        +     N
Sbjct: 269 LKLDDMDGAEKTFEE----------------------------WLSGNKFFDFRVP---N 297

Query: 309 SVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKL 368
            +I  YCK G ++KA  L+      G +P A+T+  LA G  ++N +E+    L+    L
Sbjct: 298 LLIRAYCKKGLLEKAEQLVSRAIEQGEEPIAVTWDALAAGYHENNQMEKAVDTLKKA--L 355

Query: 369 ITTKKVRSSTPWLETTLS-IIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYV 427
           + T +     P    TLS  +E    KGDV  AENL   L++ +     +  + L+  Y+
Sbjct: 356 LATSQGWKPNP---VTLSACLEYLKGKGDVEEAENLIRLLREQSLVS-AYDSDRLVN-YI 410

Query: 428 KAKINDPNLLRRMILGGARPDAETYSLLKLAEQ 460
           +++    + + +M+      DAET  ++ L ++
Sbjct: 411 RSEEPGSSTIAQMLWDHEDLDAETDGVVDLKQE 443


>gi|297797449|ref|XP_002866609.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297312444|gb|EFH42868.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 724

 Score = 90.9 bits (224), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 102/436 (23%), Positives = 177/436 (40%), Gaps = 77/436 (17%)

Query: 56  RPYRPKELDYSYLLEFTIKNHGISQGEKLFCCIPKDYQ---NELL--------------- 97
           R + P ++ Y YL+    K   +   + LF  IPK      N L+               
Sbjct: 310 RGFTPDDITYGYLMNGLCKIGRVDAAKDLFYRIPKPTSVIFNTLIHGFVTHGRLDDAKAV 369

Query: 98  ----------------YNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNS 141
                           YN+L+     KG++ L+LE ++ MR  G   +   +  L+    
Sbjct: 370 LSDMVTSYGIVPDVCTYNSLIYGYWKKGLVGLALEVLRDMRNKGCKPNVYSYTILVDGFC 429

Query: 142 SPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEV 201
             G+     N+L +M AD + P+   F+ L+     +H I   ++++ +M R   +P+  
Sbjct: 430 KLGKIDEAYNLLNEMSADGLKPNTVGFNCLISAFCKEHRIPEAVEIFREMPRKGCKPDVY 489

Query: 202 SYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATV 261
           ++  L +              V+ ++ ++    W   D  +I  G +A            
Sbjct: 490 TFNSLISGLC----------EVDEIKHAL----WLLRD--MISEGVVAN----------- 522

Query: 262 QELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFID 321
                  + +Y   I AF R  ++  A +L  EM     L     YNS+I   C+ G +D
Sbjct: 523 -------TVTYNTLINAFLRRGEIKEARKLVNEMVFQGSLLDEITYNSLIKGLCRAGEVD 575

Query: 322 KASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWL 381
           KA  L ++M  +G  P++I+   L  G  +S +VEE   A+E   +++    +R STP +
Sbjct: 576 KARSLFEKMLRDGLVPSSISCNILINGLCRSGMVEE---AVEFQKEMV----LRGSTPDI 628

Query: 382 ETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKI--NDPNLLRR 439
            T  S+I      G + +   +F +L+       T  YNTL+    K     +   LL  
Sbjct: 629 VTFNSLINGLCRAGRIEDGLTMFRKLQAEGIPPDTVTYNTLMSWLCKGGFVYDACLLLDE 688

Query: 440 MILGGARPDAETYSLL 455
            I  G  P+  T+S+L
Sbjct: 689 GIEDGFVPNDRTWSIL 704



 Score = 73.9 bits (180), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 101/459 (22%), Positives = 187/459 (40%), Gaps = 64/459 (13%)

Query: 30  FHSIN-----RLRKLQLN-KRALEVMEWVIRERPYRPKELDYSYLL-------EF----- 71
           FH I      +L +L L+   ++E+  W   ++ YR     Y  L+       EF     
Sbjct: 67  FHKITPFQLCKLLELPLDVSTSMELFSWTGSQKGYRHSFDVYQVLIGKLGSNGEFKTIDR 126

Query: 72  ---TIKNHGISQGEKLFCCIPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMR-VLGHS 127
               +K+ GI   E LF  I +DY                G    +   M +MR V    
Sbjct: 127 LLMQMKDEGIVFKESLFISIMRDYDK-------------AGFPGQTTRLMLEMRNVYSCE 173

Query: 128 ISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKV 187
            ++  +N ++ +  S    K   N+   M + K+ P + TF ++MK     + ++  + V
Sbjct: 174 PTFKSYNVVLEILVSGNCHKVAANVFYDMLSRKIPPTLFTFGVVMKALCAVNEVDSALSV 233

Query: 188 YSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGN--NWSTLDVLIILY 245
             DM +    PN V Y  L   H++++   V E      E  + G   +  T + +I+  
Sbjct: 234 LRDMTKHGCVPNSVIYQTL--IHSLSKCNRVNEALQLLEEMFLMGCVPDAETFNDVIL-- 289

Query: 246 GYLAKGKDLERIWATVQEL------PNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVK 299
             L K   +      V  +      P+  +  Y++      +I +V  A++L+  +    
Sbjct: 290 -GLCKFDRINEAAKMVNRMLIRGFTPDDITYGYLM--NGLCKIGRVDAAKDLFYRIPK-- 344

Query: 300 QLKATEQYNSVISVYCKNGFIDKASGLLKEMSMN-GCKPNAITYRHLALGCFKSNLVEEG 358
               +  +N++I  +  +G +D A  +L +M  + G  P+  TY  L  G +K  LV   
Sbjct: 345 --PTSVIFNTLIHGFVTHGRLDDAKAVLSDMVTSYGIVPDVCTYNSLIYGYWKKGLV--- 399

Query: 359 FKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFV 418
                L ++++   + +   P + +   +++ F + G +  A NL  E+        T  
Sbjct: 400 ----GLALEVLRDMRNKGCKPNVYSYTILVDGFCKLGKIDEAYNLLNEMSADGLKPNTVG 455

Query: 419 YNTLIKAYVKA-KINDP-NLLRRMILGGARPDAETYSLL 455
           +N LI A+ K  +I +   + R M   G +PD  T++ L
Sbjct: 456 FNCLISAFCKEHRIPEAVEIFREMPRKGCKPDVYTFNSL 494


>gi|15242530|ref|NP_198814.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75171449|sp|Q9FLD8.1|PP408_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g39980, chloroplastic; Flags: Precursor
 gi|10176990|dbj|BAB10222.1| unnamed protein product [Arabidopsis thaliana]
 gi|332007115|gb|AED94498.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 678

 Score = 90.5 bits (223), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 88/378 (23%), Positives = 174/378 (46%), Gaps = 28/378 (7%)

Query: 43  KRALEVMEWVIRERPYRPKELDYSYLL-------EFTIKNHGISQGEKLFCCIPKDYQNE 95
           +R+L +++WV  E  Y P    Y+ +L       +F I  HG+    +     P  Y   
Sbjct: 136 QRSLALLDWVHEEAKYTPSVFAYNVVLRNVLRAKQFDIA-HGLFDEMRQRALAPDRYT-- 192

Query: 96  LLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQ 155
             Y+ L+ +   +G+   +L +++KM     S   ++++ LI L+          +I  +
Sbjct: 193 --YSTLITSFGKEGMFDSALSWLQKMEQDRVSGDLVLYSNLIELSRRLCDYSKAISIFSR 250

Query: 156 MKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARL 215
           +K   + P +  ++ ++ +            +  +M  + V PN VSY  L + +     
Sbjct: 251 LKRSGITPDLVAYNSMINVYGKAKLFREARLLIKEMNEAGVLPNTVSYSTLLSVYVENHK 310

Query: 216 YTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQEL---PNVRSKSY 272
           +  A +    +++     + +T +++I +YG L   K+ +R++ +++++   PNV S + 
Sbjct: 311 FLEALSVFAEMKEVNCALDLTTCNIMIDVYGQLDMVKEADRLFWSLRKMDIEPNVVSYNT 370

Query: 273 VLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSM 332
           +L +  +G       A  L+  MQ     +    YN++I +Y K    +KA+ L++EM  
Sbjct: 371 ILRV--YGEAELFGEAIHLFRLMQRKDIEQNVVTYNTMIKIYGKTMEHEKATNLVQEMQS 428

Query: 333 NGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTL--SIIEI 390
            G +PNAITY         S ++    KA +L       +K+RSS   ++  L  ++I  
Sbjct: 429 RGIEPNAITY---------STIISIWGKAGKLDRAATLFQKLRSSGVEIDQVLYQTMIVA 479

Query: 391 FAEKGDVGNAENLFEELK 408
           +   G +G+A+ L  ELK
Sbjct: 480 YERVGLMGHAKRLLHELK 497



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 67/326 (20%), Positives = 133/326 (40%), Gaps = 64/326 (19%)

Query: 160 KVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVA 219
           K  P V  ++++++        +    ++ +M++  + P+  +Y  L T+     ++  A
Sbjct: 150 KYTPSVFAYNVVLRNVLRAKQFDIAHGLFDEMRQRALAPDRYTYSTLITSFGKEGMFDSA 209

Query: 220 ETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSKSYVLAIEAF 279
            ++++ +E+     +       ++LY  L    +L R           R   Y  AI  F
Sbjct: 210 LSWLQKMEQDRVSGD-------LVLYSNLI---ELSR-----------RLCDYSKAISIF 248

Query: 280 GRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNA 339
            R+ +     +L               YNS+I+VY K     +A  L+KEM+  G  PN 
Sbjct: 249 SRLKRSGITPDLV-------------AYNSMINVYGKAKLFREARLLIKEMNEAGVLPNT 295

Query: 340 ITYRHL-------------------------ALGCFKSNLVEEGFKALEL---GMKLITT 371
           ++Y  L                         AL     N++ + +  L++     +L  +
Sbjct: 296 VSYSTLLSVYVENHKFLEALSVFAEMKEVNCALDLTTCNIMIDVYGQLDMVKEADRLFWS 355

Query: 372 KKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKI 431
            +     P + +  +I+ ++ E    G A +LF  +++ +  +    YNT+IK Y K   
Sbjct: 356 LRKMDIEPNVVSYNTILRVYGEAELFGEAIHLFRLMQRKDIEQNVVTYNTMIKIYGKTME 415

Query: 432 ND--PNLLRRMILGGARPDAETYSLL 455
           ++   NL++ M   G  P+A TYS +
Sbjct: 416 HEKATNLVQEMQSRGIEPNAITYSTI 441



 Score = 39.3 bits (90), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 46/239 (19%), Positives = 101/239 (42%), Gaps = 12/239 (5%)

Query: 131 LVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSD 190
           + +N +I +       +   N++++M++  + P+  T+  ++ I      ++    ++  
Sbjct: 401 VTYNTMIKIYGKTMEHEKATNLVQEMQSRGIEPNAITYSTIISIWGKAGKLDRAATLFQK 460

Query: 191 MKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAK 250
           ++ S VE ++V Y  +  A+    L   A+  +  L+     +N      + IL      
Sbjct: 461 LRSSGVEIDQVLYQTMIVAYERVGLMGHAKRLLHELK---LPDNIPRETAITIL---AKA 514

Query: 251 GKDLERIWATVQELPNVRSKS---YVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQY 307
           G+  E  W   Q   +   K    +   I  + R  +     E++ +M++      +   
Sbjct: 515 GRTEEATWVFRQAFESGEVKDISVFGCMINLYSRNQRYVNVIEVFEKMRTAGYFPDSNVI 574

Query: 308 NSVISVYCKNGFIDKASGLLKEMSMNGCK-PNAITYRHLALGCFKSN--LVEEGFKALE 363
             V++ Y K    +KA  + +EM   GC  P+ + ++ L+L   K +  +VE  F+ LE
Sbjct: 575 AMVLNAYGKQREFEKADTVYREMQEEGCVFPDEVHFQMLSLYSSKKDFEMVESLFQRLE 633


>gi|293331503|ref|NP_001168643.1| uncharacterized protein LOC100382430 [Zea mays]
 gi|223949857|gb|ACN29012.1| unknown [Zea mays]
 gi|413933913|gb|AFW68464.1| hypothetical protein ZEAMMB73_255812 [Zea mays]
          Length = 500

 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 86/393 (21%), Positives = 177/393 (45%), Gaps = 20/393 (5%)

Query: 28  EIFHSINRLRKLQLNKRALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQGEKLFCC 87
           E+   +  LRK + +++ALEV EW+  +   +    D++  L+   + HG+   E  F  
Sbjct: 81  ELQRIVKELRKRRRHRQALEVSEWMSLKGHVKFLPKDHAIHLDLIGQIHGVEAAETYFNN 140

Query: 88  IPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRK 147
           +    + E  Y  L+     + ++  +L + + M+ LG   S L +N L+ L +  G+ +
Sbjct: 141 LSDKDKTEKPYGALLNCYTRELLVDKALAHFRNMKELGFVFSTLPYNDLMGLYTRIGQHE 200

Query: 148 TIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEV----SY 203
            +P+++ +MK++ + P   ++ I +       +  GL     +M   E EP  V    +Y
Sbjct: 201 RVPSVMAEMKSNGIVPDNFSYRICINSYGTRADFFGLENTLEEM---ECEPQIVVDWNTY 257

Query: 204 CILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQE 263
            ++A+ +    L   A + +   E  +   +      LI LYG L    + +R+WA   +
Sbjct: 258 AVVASNYIKGDLREKAYSALSKAEAKLDKQDPDAYRHLISLYGNLGDKSEAKRLWAV--Q 315

Query: 264 LPNVR---SKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFI 320
           + N +   ++ Y+  +    ++ +++ AE+L  E +S +        N +++ Y +   +
Sbjct: 316 MSNCKRYINRDYMNMLSVLVKLDEITEAEDLLKEWESSQNSFDFRVPNVLLTGYRQKALL 375

Query: 321 DKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPW 380
           DKA  LL      G  P + ++  +A+G  +   V    KA E+    ++      +T W
Sbjct: 376 DKAEMLLDGFLKKGKTPPSTSWGIVAIGYAEKGDVA---KAYEMTKNALSVHA--PNTGW 430

Query: 381 LETTL---SIIEIFAEKGDVGNAENLFEELKKA 410
           +        I++   ++G+V + E     LK A
Sbjct: 431 IPRPSMLEMILKYLGDEGEVKDVEAFVSLLKAA 463


>gi|222637397|gb|EEE67529.1| hypothetical protein OsJ_24995 [Oryza sativa Japonica Group]
          Length = 491

 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 85/375 (22%), Positives = 168/375 (44%), Gaps = 16/375 (4%)

Query: 34  NRLRKLQLNKRALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQGEKLFCCIPKDYQ 93
           NRLR ++L +    V EW+  +   +    D++  L+   + HG S  E  F  +P   +
Sbjct: 92  NRLRHVELERI---VSEWMNAKGHVKFLPKDHAVHLDLIGEIHGSSAAETYFNNLPDKDK 148

Query: 94  NELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNIL 153
            E  Y  L+     + +++ SL + +KM+ LG   S L +N ++ L ++ G+ + +P+++
Sbjct: 149 TEKPYGALLNCYTRELLVEKSLAHFQKMKELGFVFSTLPYNNIMGLYTNLGQHEKVPSVI 208

Query: 154 RQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEV----SYCILATA 209
            +MK++ + P   ++ I +       +  G+     +M   E EP  V    +Y ++A+ 
Sbjct: 209 AEMKSNGIVPDNFSYRICINSYGTRADFFGMENTLEEM---ECEPKIVVDWNTYAVVASN 265

Query: 210 HAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVR- 268
           +    +   A + ++  E  +   +  + + LI LYG+L    ++ R+WA      N   
Sbjct: 266 YIKGNIREKAFSALKKAEAKINIKDSDSYNHLISLYGHLGDKSEVNRLWALQMSNCNRHI 325

Query: 269 SKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLK 328
           +K Y   +    ++ ++  AE L  E +S       +  N +++ Y +   +DKA  LL 
Sbjct: 326 NKDYTTMLAVLVKLNEIEEAEVLLKEWESSGNAFDFQVPNVLLTGYRQKDLLDKAEALLD 385

Query: 329 EMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSII 388
           +    G  P + ++  +A G  +     +  KA EL    +       +T W+     I 
Sbjct: 386 DFLKKGKMPPSTSWAIVAAGYAEKG---DAAKAYELTKNALCV--YAPNTGWIPRPGMIE 440

Query: 389 EIFAEKGDVGNAENL 403
            I    GD G+ E +
Sbjct: 441 MILKYLGDEGDVEEV 455


>gi|302801570|ref|XP_002982541.1| hypothetical protein SELMODRAFT_421992 [Selaginella moellendorffii]
 gi|300149640|gb|EFJ16294.1| hypothetical protein SELMODRAFT_421992 [Selaginella moellendorffii]
          Length = 487

 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 91/431 (21%), Positives = 181/431 (41%), Gaps = 59/431 (13%)

Query: 33  INRLRKLQLNKRALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQGEKLFCCIPKDY 92
           I RLR+     +AL++  W+  +R +     D    L  T ++    + EK+   +    
Sbjct: 110 IARLRRRSRFLQALQISNWMFHDRRFTVATQDLVMRLYLTSRSGLFEEAEKILAEVHFTQ 169

Query: 93  QNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNI 152
           +NE  Y  L+     +  +  + +  ++M+  G + S   +N ++I+     +RK + + 
Sbjct: 170 RNEWAYLALLSGYASRRHVTRAEKLWRRMKERGLTKSPHGYNNMLIMY----KRKKLHSR 225

Query: 153 LRQ----MKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILAT 208
           LRQ    M    V P  +TF +++         +G+ K                      
Sbjct: 226 LRQLFVEMVLSGVVPDATTFLVILSAREQIGGFQGIEK--------------------RA 265

Query: 209 AHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVR 268
            HA+A L              +    W T++V++ +YG+L    DLE     V+E P   
Sbjct: 266 RHAMANL-------------EILNLPWFTMEVVMRVYGFLG---DLEGGGKDVEESP--- 306

Query: 269 SKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLK 328
                   EAF     +  +E ++ +  +  +    +++  +I  YC+ G   KA GLL+
Sbjct: 307 -------AEAFSMAGAMGTSEAIFQKTGNETKDSDLQRHYVMIEAYCREGMTGKAQGLLR 359

Query: 329 EMSMNGCKPNAITYRHLALGCF-KSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSI 387
           ++   G  P    +  + + CF K   ++   +   + +    T++  +  P   + L I
Sbjct: 360 KLIAKGRSPAPFAFNSI-IQCFLKDKQLDRALELFYVSLNRFGTRQTLALGP---SILGI 415

Query: 388 IEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKINDPNLLRRMILGGARP 447
           +E++A+ GDV  AE +  + ++ +Y     +YN L+K Y+ +++    +  R      + 
Sbjct: 416 MEVYAKAGDVNAAEQIVHKCQECHYFSDVRLYNALLKVYLNSQVPATGIEDRFRDCLMQG 475

Query: 448 DAETYSLLKLA 458
           D E+  LL+ A
Sbjct: 476 DTESLELLRKA 486


>gi|34015232|gb|AAQ56425.1| putative fertility restorer [Oryza sativa Japonica Group]
 gi|34015270|gb|AAQ56462.1| putative fertility restorer [Oryza sativa Japonica Group]
          Length = 1007

 Score = 90.1 bits (222), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 96/387 (24%), Positives = 156/387 (40%), Gaps = 35/387 (9%)

Query: 102 VIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKV 161
           +IA  D G  + +      M+  G   +   +  LI      G  K    +  +M  D V
Sbjct: 327 IIALCDMGCYEDAWRLFVDMKNKGCEPNVYTYTALISGLCVSGLLKVAIGLFHRMSRDGV 386

Query: 162 APHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAET 221
            P+  T++ L+ I   +  I+    V + M R+   PN V+Y  +   + +      A  
Sbjct: 387 FPNTVTYNALINILVENRRIKYAFVVLNLMGRNGCSPNIVTYNEMIKGYCILGDPKKAML 446

Query: 222 YVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLE--RIWATVQELPNVRSK-SYVLAIEA 278
            +  + +     N  T + +I   GY   G      RI   +++      + SY   I  
Sbjct: 447 VMNNMLQRGHSANLVTYNTII--KGYCDSGNTTSALRILDLMRDGGCKPDEWSYTELICG 504

Query: 279 FGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPN 338
           F +I+++  A  L+ EM           Y ++I  YCK+  +D A+ LL+ M  +GC+PN
Sbjct: 505 FCKISKMESAFGLFNEMVDDGLCPNEVTYTALIDGYCKDEKLDTATSLLEHMKRSGCRPN 564

Query: 339 AITYRHLALGCFKSN-----------LVEEGF-----------------KALELGMKLIT 370
             TY  L  G  K N           ++EEG                   +  L +++  
Sbjct: 565 VQTYNVLIHGLTKQNNFSGAEELCKVMIEEGIFPNVVTYTAMIDGLCKNGSTSLALEMFN 624

Query: 371 TKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYV-KA 429
               +   P L T  S+I    ++G V  AENLF EL++         Y  +I+AY+   
Sbjct: 625 KMIEQGCLPNLLTYSSLIRALGQEGKVEEAENLFAELERHGLIPDEITYVKMIEAYIMSG 684

Query: 430 KINDP-NLLRRMILGGARPDAETYSLL 455
           K+    N L RMI  G +P   TY +L
Sbjct: 685 KVEHAFNFLGRMIKAGCQPTLWTYGVL 711



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 76/361 (21%), Positives = 144/361 (39%), Gaps = 45/361 (12%)

Query: 98  YNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMK 157
           Y+ L+I     G+    ++   +M   G   + L++N +I      G       I++++ 
Sbjct: 183 YSALLIHLSRLGMTAAVMDRYHRMLSEGVQPNLLIYNAVINALCKDGNVADAETIMKKVF 242

Query: 158 ADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYT 217
             +++P   T+  ++      H+++  ++V++ M +   EPN V+Y              
Sbjct: 243 ESEMSPDTFTYTSMILGHCRKHDLDSALQVFNQMAKEGCEPNTVTY-------------- 288

Query: 218 VAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSKSYVLAIE 277
              T +  L  S   N    L   +IL+G L                    + +    I 
Sbjct: 289 --STLINGLCDSGRVNEAFDLIREMILHGILPT------------------AHTCTGPII 328

Query: 278 AFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKP 337
           A   +     A  L+++M++         Y ++IS  C +G +  A GL   MS +G  P
Sbjct: 329 ALCDMGCYEDAWRLFVDMKNKGCEPNVYTYTALISGLCVSGLLKVAIGLFHRMSRDGVFP 388

Query: 338 NAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDV 397
           N +TY  L     ++  ++  F  L L  +          +P + T   +I+ +   GD 
Sbjct: 389 NTVTYNALINILVENRRIKYAFVVLNLMGR-------NGCSPNIVTYNEMIKGYCILGDP 441

Query: 398 GNAENLFEELKKANYTKYTFVYNTLIKAYVKAKINDPNLLRRMIL---GGARPDAETYSL 454
             A  +   + +  ++     YNT+IK Y  +  N  + LR + L   GG +PD  +Y+ 
Sbjct: 442 KKAMLVMNNMLQRGHSANLVTYNTIIKGYCDSG-NTTSALRILDLMRDGGCKPDEWSYTE 500

Query: 455 L 455
           L
Sbjct: 501 L 501



 Score = 60.1 bits (144), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 68/310 (21%), Positives = 127/310 (40%), Gaps = 11/310 (3%)

Query: 60  PKELDYSYLLEFTIKNHGISQGEKLFCCIPKD--YQNELLYNNLVIACLDKGVIKLSLEY 117
           P  + Y+ L+   ++N  I     +   + ++    N + YN ++      G  K ++  
Sbjct: 388 PNTVTYNALINILVENRRIKYAFVVLNLMGRNGCSPNIVTYNEMIKGYCILGDPKKAMLV 447

Query: 118 MKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEAN 177
           M  M   GHS + + +N +I      G   +   IL  M+     P   ++  L+     
Sbjct: 448 MNNMLQRGHSANLVTYNTIIKGYCDSGNTTSALRILDLMRDGGCKPDEWSYTELICGFCK 507

Query: 178 DHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWST 237
              +E    ++++M    + PNEV+Y  L   +        A + +E +++S    N  T
Sbjct: 508 ISKMESAFGLFNEMVDDGLCPNEVTYTALIDGYCKDEKLDTATSLLEHMKRSGCRPNVQT 567

Query: 238 LDVLIILYGY-----LAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELW 292
            +VLI  +G       +  ++L ++       PNV   +Y   I+   +    S A E++
Sbjct: 568 YNVLI--HGLTKQNNFSGAEELCKVMIEEGIFPNV--VTYTAMIDGLCKNGSTSLALEMF 623

Query: 293 LEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKS 352
            +M     L     Y+S+I    + G +++A  L  E+  +G  P+ ITY  +      S
Sbjct: 624 NKMIEQGCLPNLLTYSSLIRALGQEGKVEEAENLFAELERHGLIPDEITYVKMIEAYIMS 683

Query: 353 NLVEEGFKAL 362
             VE  F  L
Sbjct: 684 GKVEHAFNFL 693



 Score = 43.5 bits (101), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 61/291 (20%), Positives = 114/291 (39%), Gaps = 16/291 (5%)

Query: 59  RPKELDYSYLLEFTIKNHGISQGEKLFCCIPKD--YQNELLYNNLVIACLDKGVIKLSLE 116
           RP    Y+ L+    K +  S  E+L   + ++  + N + Y  ++      G   L+LE
Sbjct: 562 RPNVQTYNVLIHGLTKQNNFSGAEELCKVMIEEGIFPNVVTYTAMIDGLCKNGSTSLALE 621

Query: 117 YMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEA 176
              KM   G   + L ++ LI      G+ +   N+  +++   + P   T+  +++   
Sbjct: 622 MFNKMIEQGCLPNLLTYSSLIRALGQEGKVEEAENLFAELERHGLIPDEITYVKMIEAYI 681

Query: 177 NDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWS 236
               +E        M ++  +P   +Y +L     +   Y +A+  + AL   +   N S
Sbjct: 682 MSGKVEHAFNFLGRMIKAGCQPTLWTYGVLI--KGLKNEYLLADQRLAALPDVVP--NCS 737

Query: 237 TLDVLIILYGYLAKGKDLERIW-ATVQEL-PNVRSKSYVLAIEAFGRIAQVSRAEELWLE 294
                   +GY    +D   +  A + EL P +  +     +       +   A EL   
Sbjct: 738 --------FGYQTTDQDAVSVMSAKLAELDPGLSVQVQNALVSNLSTAGRWFEANELLGS 789

Query: 295 MQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHL 345
           M S       E YNS++    +   +D A G+ K MS  GC+ +   Y+ L
Sbjct: 790 MISQGLCPDQEAYNSLLCSLLRVRNVDLAMGVFKHMSTQGCEVHLNGYKEL 840


>gi|357140697|ref|XP_003571900.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09820-like [Brachypodium distachyon]
          Length = 571

 Score = 90.1 bits (222), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 98/412 (23%), Positives = 178/412 (43%), Gaps = 25/412 (6%)

Query: 58  YRPKELDYSYLLEFTIKNHGISQGEKLF-CCIPKDYQNELLYNNLVIACLDK-GVIKLSL 115
           +RP     + LL   +    +   E+ F   + +    +L   N+VI+ L K G ++ + 
Sbjct: 146 HRPSAFSVNRLLSALVAAERVDLAERAFKAALRRRVSPDLFTFNIVISGLCKTGQLRKAG 205

Query: 116 EYMKKMRVLGHSISYLVFNRLI---ILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILM 172
           +  K +R  G + S + +N +I         GR   +  +L++M    ++P+  TF++L+
Sbjct: 206 DVAKDIRAWGLAPSVVTYNTIIDGYCKRGRAGRMYHVDALLKEMVEAGISPNEVTFNVLV 265

Query: 173 KIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTG 232
                D N    ++V+ +MK+  +  + V+Y  L                V+ ++     
Sbjct: 266 NGYCKDSNTAAAVRVFEEMKQQGIAASVVTYSALVWGLCSEGKVEEGVKLVDEMKDLGLV 325

Query: 233 NNWSTLDVLIILYGYLAKG--KDLERIWATVQELPNVRSK--SYVLAIEAFGRIAQVSRA 288
            N +TL+   +L G+  KG   D E  W    E  NV+    +Y + ++ + R+ ++  A
Sbjct: 326 PNLATLNS--VLNGFCKKGMMTDAEG-WIDSMEQKNVKPNVVTYTILVDGYRRLDKMKDA 382

Query: 289 EELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHL--A 346
             +   M           YN +I+ + +NG     SGLL EM M G + + +TY  L  A
Sbjct: 383 LAVKEAMSGKGVRPNARIYNCLIAGFTRNGDWRSVSGLLDEMRMKGVRADIVTYNVLIGA 442

Query: 347 LGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEE 406
           L C K  + +         +KL+    +    P   T  +II  + EKG++ +A  +   
Sbjct: 443 L-CVKGEVRK--------AVKLLDEMLMVGLEPVHLTYNTIINGYCEKGNIKSAYEIRTR 493

Query: 407 LKKANYTKYTFVYNTLIKAYVK-AKINDPN-LLRRMILGGARPDAETYSLLK 456
           ++K         YN  IK   +  K+ + N LL  M+  G  P+  TY  +K
Sbjct: 494 MEKGKKRANVVTYNVFIKCLCRMGKMEETNELLNEMLEKGLVPNGVTYDTIK 545



 Score = 43.9 bits (102), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 63/307 (20%), Positives = 125/307 (40%), Gaps = 16/307 (5%)

Query: 60  PKELDYSYLLEFTIKNHGISQGEKLFCCIPKD--YQNELLYNNLVIACLDKGVIKLSLEY 117
           P E+ ++ L+    K+   +   ++F  + +     + + Y+ LV     +G ++  ++ 
Sbjct: 256 PNEVTFNVLVNGYCKDSNTAAAVRVFEEMKQQGIAASVVTYSALVWGLCSEGKVEEGVKL 315

Query: 118 MKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEAN 177
           + +M+ LG   +    N ++      G        +  M+   V P+V T+ IL+     
Sbjct: 316 VDEMKDLGLVPNLATLNSVLNGFCKKGMMTDAEGWIDSMEQKNVKPNVVTYTILVDGYRR 375

Query: 178 DHNIEGLMKVYSDMKRSEVEPNEVSY-CILATAHAVARLYTVAETYVEALEKSMTGNNWS 236
              ++  + V   M    V PN   Y C++A         +V+    E   K +  +   
Sbjct: 376 LDKMKDALAVKEAMSGKGVRPNARIYNCLIAGFTRNGDWRSVSGLLDEMRMKGVRAD-IV 434

Query: 237 TLDVLIILYGYLAKGKDLERIWATVQELPNVRSK----SYVLAIEAFGRIAQVSRAEELW 292
           T +VLI   G L    ++ +    + E+  V  +    +Y   I  +     +  A E+ 
Sbjct: 435 TYNVLI---GALCVKGEVRKAVKLLDEMLMVGLEPVHLTYNTIINGYCEKGNIKSAYEIR 491

Query: 293 LEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKS 352
             M+  K+      YN  I   C+ G +++ + LL EM   G  PN +TY  +     K 
Sbjct: 492 TRMEKGKKRANVVTYNVFIKCLCRMGKMEETNELLNEMLEKGLVPNGVTYDTI-----KE 546

Query: 353 NLVEEGF 359
            ++E+G+
Sbjct: 547 GMMEKGY 553


>gi|449453081|ref|XP_004144287.1| PREDICTED: pentatricopeptide repeat-containing protein At5g42310,
           mitochondrial-like [Cucumis sativus]
 gi|449489420|ref|XP_004158306.1| PREDICTED: pentatricopeptide repeat-containing protein At5g42310,
           mitochondrial-like [Cucumis sativus]
          Length = 720

 Score = 90.1 bits (222), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 95/415 (22%), Positives = 190/415 (45%), Gaps = 21/415 (5%)

Query: 43  KRALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQG--EKLFCCIPKDY--QNELLY 98
           ++AL +M   +R+  ++   ++YS +++   + + I     +KL+  I  D    + LL 
Sbjct: 226 EKALNLMSR-MRQDGFQSDFINYSLIIQSLTRTNKIDIPLLQKLYEEIESDKIELDGLLL 284

Query: 99  NNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKA 158
           N++++     G    +L ++  ++  G +     F  +I    + GR +    I  +MK 
Sbjct: 285 NDIILGFAKAGDPNRALYFLSMVQASGLNPKTSTFVAVISALGNHGRTEEAEAIFEEMKE 344

Query: 159 DKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTV 218
             + P +  F+ L+K  A   +++    + S+M++S + P+E +Y +L  A+A    +  
Sbjct: 345 GGLKPRIKAFNALLKGYARKGSLKEAESIISEMEKSGLSPDEHTYGLLVDAYANVGRWES 404

Query: 219 AETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSKS----YVL 274
           A   ++ +E      N  T     IL  Y  +G + ++ +  ++E+ N   K     Y +
Sbjct: 405 ARHLLKQMEARNVQPN--TFIFSRILASYRDRG-EWQKTFEVLREMKNSNVKPDRHFYNV 461

Query: 275 AIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNG 334
            I+ FG+   +  A E +  M S         +N++I  + K+G+ D+A+ L +EM   G
Sbjct: 462 MIDTFGKFNCLDHAMETYDRMLSEGIEPDVVTWNTLIDCHRKHGYHDRAAELFEEMQERG 521

Query: 335 CKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEK 394
             P   TY  +       N + E  K  E+ + L+   + +   P + T  ++++I+   
Sbjct: 522 YLPCPTTYNIMI------NSLGEQEKWDEVKI-LLGKMQSQGLLPNVVTYTTLVDIYGHS 574

Query: 395 GDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKINDP--NLLRRMILGGARP 447
           G   +A +  E +K A       +YN LI A+ +  +++   N  R MI  G RP
Sbjct: 575 GRFNDAIDCLEAMKSAGLKPSATMYNALINAFAQRGLSEQAVNAYRVMISDGLRP 629



 Score = 80.9 bits (198), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 89/375 (23%), Positives = 164/375 (43%), Gaps = 20/375 (5%)

Query: 98  YNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMK 157
           +N L+     KG +K +   + +M   G S     +  L+   ++ GR ++  ++L+QM+
Sbjct: 354 FNALLKGYARKGSLKEAESIISEMEKSGLSPDEHTYGLLVDAYANVGRWESARHLLKQME 413

Query: 158 ADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCIL-ATAHAVARLY 216
           A  V P+   F  ++    +    +   +V  +MK S V+P+   Y ++  T      L 
Sbjct: 414 ARNVQPNTFIFSRILASYRDRGEWQKTFEVLREMKNSNVKPDRHFYNVMIDTFGKFNCLD 473

Query: 217 TVAETYVEALEKSMTGN--NWSTLDVLIILYGYLAKGKDLERIWATVQE---LPNVRSKS 271
              ETY   L + +  +   W+TL      +GY  +  +L   +  +QE   LP     +
Sbjct: 474 HAMETYDRMLSEGIEPDVVTWNTLIDCHRKHGYHDRAAEL---FEEMQERGYLPC--PTT 528

Query: 272 YVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMS 331
           Y + I + G   +    + L  +MQS   L     Y +++ +Y  +G  + A   L+ M 
Sbjct: 529 YNIMINSLGEQEKWDEVKILLGKMQSQGLLPNVVTYTTLVDIYGHSGRFNDAIDCLEAMK 588

Query: 332 MNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIF 391
             G KP+A  Y  L     +  L E+   A     +++ +  +R   P L    S+I  F
Sbjct: 589 SAGLKPSATMYNALINAFAQRGLSEQAVNA----YRVMISDGLR---PSLLALNSLINAF 641

Query: 392 AEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKIND--PNLLRRMILGGARPDA 449
            E      A ++ + +K+ +       Y TL+KA ++    D  P +   MIL G  PD 
Sbjct: 642 GEDRRDIEAFSILQYMKENDVKPDVVTYTTLMKALIRVDKFDKVPAVYEEMILSGCTPDG 701

Query: 450 ETYSLLKLAEQFQKK 464
           +  ++L+ A ++ K+
Sbjct: 702 KARAMLRSALRYMKR 716


>gi|449487793|ref|XP_004157803.1| PREDICTED: pentatricopeptide repeat-containing protein At1g74850,
           chloroplastic-like [Cucumis sativus]
          Length = 864

 Score = 90.1 bits (222), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 93/375 (24%), Positives = 161/375 (42%), Gaps = 54/375 (14%)

Query: 87  CIPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRR 146
           C P    NE +Y  ++     +G+++   E   +M   G   S   +  LI      G+ 
Sbjct: 144 CKP----NEHIYTIIISLLGREGLLEKCSEIFDEMASQGVIRSVFSYTALINAYGRNGQY 199

Query: 147 KTIPNILRQMKADKVAPHVSTFHILMKIEA-NDHNIEGLMKVYSDMKRSEVEPNEVSYCI 205
           +T   +L +MK ++V+P++ T++ ++   A  D + EGL+ ++++M+   V+P+ V+Y  
Sbjct: 200 ETSLELLERMKRERVSPNILTYNTVINACARGDLDWEGLLGLFAEMRHEGVQPDLVTYNT 259

Query: 206 LATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQE-- 263
           L +A A   L                                   G + E ++ T+ E  
Sbjct: 260 LLSACAARGL-----------------------------------GDEAEMVFKTMIEGG 284

Query: 264 -LPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDK 322
            +P + + SY+  +E FG++ ++ +   L  EM+S   L     YN +I  + K G I +
Sbjct: 285 IVPEITTYSYI--VETFGKLGKLEKVAMLLKEMESEGYLPDISSYNVLIEAHAKLGSIKE 342

Query: 323 ASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLE 382
           A  + K+M   GC PNA TY  L L  +  +   +  + L L M      K  S+ P   
Sbjct: 343 AMDVFKQMQAAGCVPNASTYSIL-LNLYGKHGRYDDVRELFLQM------KESSAEPDAT 395

Query: 383 TTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKINDP--NLLRRM 440
           T   +I +F E G       LF +L   N       Y  L+ A  K  +++    +L  M
Sbjct: 396 TYNILIRVFGEGGYFKEVVTLFHDLVDENIDPNMETYEGLVFACGKGGLHEDAKKILFHM 455

Query: 441 ILGGARPDAETYSLL 455
              G  P ++ YS L
Sbjct: 456 NGKGIVPSSKAYSGL 470



 Score = 78.2 bits (191), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 78/328 (23%), Positives = 136/328 (41%), Gaps = 12/328 (3%)

Query: 118 MKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEAN 177
           +K+M   G+      +N LI  ++  G  K   ++ +QM+A    P+ ST+ IL+ +   
Sbjct: 312 LKEMESEGYLPDISSYNVLIEAHAKLGSIKEAMDVFKQMQAAGCVPNASTYSILLNLYGK 371

Query: 178 DHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWST 237
               + + +++  MK S  EP+  +Y IL         +    T    L       N  T
Sbjct: 372 HGRYDDVRELFLQMKESSAEPDATTYNILIRVFGEGGYFKEVVTLFHDLVDENIDPNMET 431

Query: 238 LDVLIILYGYLAKGKDLERIWATVQELPNV-RSKSYVLAIEAFGRIAQVSRAEELWLEMQ 296
            + L+   G     +D ++I   +     V  SK+Y   IEA+G+ A    A   +  M 
Sbjct: 432 YEGLVFACGKGGLHEDAKKILFHMNGKGIVPSSKAYSGLIEAYGQAALYDEALVAFNTMN 491

Query: 297 SVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVE 356
            V      + YNS+I  + + G   +   +L  M   G   NA ++  +  G  +S   E
Sbjct: 492 EVGSKSTIDTYNSLIHTFARGGLYKEFEAILSRMREYGISRNAKSFSGIIEGYRQSGQYE 551

Query: 357 EGFKALELGMKLITTKKVRSSTPWLETTL-SIIEIFAEKGDVGNAENLFEELKKANYTKY 415
           E  KA       +  +K+R      E TL  ++ ++   G V  ++  F E+K +     
Sbjct: 552 EAIKA------FVEMEKMRCELD--EQTLEGVLGVYCFAGLVDESKEQFIEIKASGILPS 603

Query: 416 TFVYNTLIKAYVK-AKINDPN-LLRRMI 441
              Y  ++  Y K  + +D + LL  MI
Sbjct: 604 VLCYCMMLAVYAKNGRWDDASELLDEMI 631


>gi|50508175|dbj|BAD30981.1| putative fertility restorer homologue [Oryza sativa Japonica Group]
 gi|50508218|dbj|BAD31653.1| putative fertility restorer homologue [Oryza sativa Japonica Group]
          Length = 918

 Score = 90.1 bits (222), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 96/387 (24%), Positives = 156/387 (40%), Gaps = 35/387 (9%)

Query: 102 VIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKV 161
           +IA  D G  + +      M+  G   +   +  LI      G  K    +  +M  D V
Sbjct: 327 IIALCDMGCYEDAWRLFVDMKNKGCEPNVYTYTALISGLCVSGLLKVAIGLFHRMSRDGV 386

Query: 162 APHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAET 221
            P+  T++ L+ I   +  I+    V + M R+   PN V+Y  +   + +      A  
Sbjct: 387 FPNTVTYNALINILVENRRIKYAFVVLNLMGRNGCSPNIVTYNEMIKGYCILGDPKKAML 446

Query: 222 YVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLE--RIWATVQELPNVRSK-SYVLAIEA 278
            +  + +     N  T + +I   GY   G      RI   +++      + SY   I  
Sbjct: 447 VMNNMLQRGHSANLVTYNTII--KGYCDSGNTTSALRILDLMRDGGCKPDEWSYTELICG 504

Query: 279 FGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPN 338
           F +I+++  A  L+ EM           Y ++I  YCK+  +D A+ LL+ M  +GC+PN
Sbjct: 505 FCKISKMESAFGLFNEMVDDGLCPNEVTYTALIDGYCKDEKLDTATSLLEHMKRSGCRPN 564

Query: 339 AITYRHLALGCFKSN-----------LVEEGF-----------------KALELGMKLIT 370
             TY  L  G  K N           ++EEG                   +  L +++  
Sbjct: 565 VQTYNVLIHGLTKQNNFSGAEELCKVMIEEGIFPNVVTYTAMIDGLCKNGSTSLALEMFN 624

Query: 371 TKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYV-KA 429
               +   P L T  S+I    ++G V  AENLF EL++         Y  +I+AY+   
Sbjct: 625 KMIEQGCLPNLLTYSSLIRALGQEGKVEEAENLFAELERHGLIPDEITYVKMIEAYIMSG 684

Query: 430 KINDP-NLLRRMILGGARPDAETYSLL 455
           K+    N L RMI  G +P   TY +L
Sbjct: 685 KVEHAFNFLGRMIKAGCQPTLWTYGVL 711



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 76/361 (21%), Positives = 144/361 (39%), Gaps = 45/361 (12%)

Query: 98  YNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMK 157
           Y+ L+I     G+    ++   +M   G   + L++N +I      G       I++++ 
Sbjct: 183 YSALLIHLSRLGMTAAVMDRYHRMLSEGVQPNLLIYNAVINALCKDGNVADAETIMKKVF 242

Query: 158 ADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYT 217
             +++P   T+  ++      H+++  ++V++ M +   EPN V+Y              
Sbjct: 243 ESEMSPDTFTYTSMILGHCRKHDLDSALQVFNQMAKEGCEPNTVTY-------------- 288

Query: 218 VAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSKSYVLAIE 277
              T +  L  S   N    L   +IL+G L                    + +    I 
Sbjct: 289 --STLINGLCDSGRVNEAFDLIREMILHGILPT------------------AHTCTGPII 328

Query: 278 AFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKP 337
           A   +     A  L+++M++         Y ++IS  C +G +  A GL   MS +G  P
Sbjct: 329 ALCDMGCYEDAWRLFVDMKNKGCEPNVYTYTALISGLCVSGLLKVAIGLFHRMSRDGVFP 388

Query: 338 NAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDV 397
           N +TY  L     ++  ++  F  L L  +          +P + T   +I+ +   GD 
Sbjct: 389 NTVTYNALINILVENRRIKYAFVVLNLMGR-------NGCSPNIVTYNEMIKGYCILGDP 441

Query: 398 GNAENLFEELKKANYTKYTFVYNTLIKAYVKAKINDPNLLRRMIL---GGARPDAETYSL 454
             A  +   + +  ++     YNT+IK Y  +  N  + LR + L   GG +PD  +Y+ 
Sbjct: 442 KKAMLVMNNMLQRGHSANLVTYNTIIKGYCDSG-NTTSALRILDLMRDGGCKPDEWSYTE 500

Query: 455 L 455
           L
Sbjct: 501 L 501



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 68/310 (21%), Positives = 127/310 (40%), Gaps = 11/310 (3%)

Query: 60  PKELDYSYLLEFTIKNHGISQGEKLFCCIPKD--YQNELLYNNLVIACLDKGVIKLSLEY 117
           P  + Y+ L+   ++N  I     +   + ++    N + YN ++      G  K ++  
Sbjct: 388 PNTVTYNALINILVENRRIKYAFVVLNLMGRNGCSPNIVTYNEMIKGYCILGDPKKAMLV 447

Query: 118 MKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEAN 177
           M  M   GHS + + +N +I      G   +   IL  M+     P   ++  L+     
Sbjct: 448 MNNMLQRGHSANLVTYNTIIKGYCDSGNTTSALRILDLMRDGGCKPDEWSYTELICGFCK 507

Query: 178 DHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWST 237
              +E    ++++M    + PNEV+Y  L   +        A + +E +++S    N  T
Sbjct: 508 ISKMESAFGLFNEMVDDGLCPNEVTYTALIDGYCKDEKLDTATSLLEHMKRSGCRPNVQT 567

Query: 238 LDVLIILYGY-----LAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELW 292
            +VLI  +G       +  ++L ++       PNV   +Y   I+   +    S A E++
Sbjct: 568 YNVLI--HGLTKQNNFSGAEELCKVMIEEGIFPNV--VTYTAMIDGLCKNGSTSLALEMF 623

Query: 293 LEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKS 352
            +M     L     Y+S+I    + G +++A  L  E+  +G  P+ ITY  +      S
Sbjct: 624 NKMIEQGCLPNLLTYSSLIRALGQEGKVEEAENLFAELERHGLIPDEITYVKMIEAYIMS 683

Query: 353 NLVEEGFKAL 362
             VE  F  L
Sbjct: 684 GKVEHAFNFL 693



 Score = 43.9 bits (102), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 61/291 (20%), Positives = 114/291 (39%), Gaps = 16/291 (5%)

Query: 59  RPKELDYSYLLEFTIKNHGISQGEKLFCCIPKD--YQNELLYNNLVIACLDKGVIKLSLE 116
           RP    Y+ L+    K +  S  E+L   + ++  + N + Y  ++      G   L+LE
Sbjct: 562 RPNVQTYNVLIHGLTKQNNFSGAEELCKVMIEEGIFPNVVTYTAMIDGLCKNGSTSLALE 621

Query: 117 YMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEA 176
              KM   G   + L ++ LI      G+ +   N+  +++   + P   T+  +++   
Sbjct: 622 MFNKMIEQGCLPNLLTYSSLIRALGQEGKVEEAENLFAELERHGLIPDEITYVKMIEAYI 681

Query: 177 NDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWS 236
               +E        M ++  +P   +Y +L     +   Y +A+  + AL   +   N S
Sbjct: 682 MSGKVEHAFNFLGRMIKAGCQPTLWTYGVLI--KGLKNEYLLADQRLAALPDVVP--NCS 737

Query: 237 TLDVLIILYGYLAKGKDLERIW-ATVQEL-PNVRSKSYVLAIEAFGRIAQVSRAEELWLE 294
                   +GY    +D   +  A + EL P +  +     +       +   A EL   
Sbjct: 738 --------FGYQTTDQDAVSVMSAKLAELDPGLSVQVQNALVSNLSTAGRWFEANELLGS 789

Query: 295 MQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHL 345
           M S       E YNS++    +   +D A G+ K MS  GC+ +   Y+ L
Sbjct: 790 MISQGLCPDQEAYNSLLCSLLRVRNVDLAMGVFKHMSTQGCEVHLNGYKEL 840


>gi|357499681|ref|XP_003620129.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355495144|gb|AES76347.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 543

 Score = 90.1 bits (222), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 88/365 (24%), Positives = 158/365 (43%), Gaps = 45/365 (12%)

Query: 94  NELLYNNLVIA-CLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNI 152
           N ++Y+ ++   C DK V   + +   +M   G S + + ++ LI    + G+ K   ++
Sbjct: 196 NVVMYSTIIDGMCKDKHV-NDAFDLYSEMVSKGISPNVVTYSALISGFFTVGQLKDAIDL 254

Query: 153 LRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAV 212
             +M  + + P V TF+IL+     D  ++    V++ M +  ++PN V+YC L   + +
Sbjct: 255 FNKMILENIKPDVYTFNILVDGFCKDGKMKEGKTVFAMMMKQGIKPNVVTYCSLMDGYCL 314

Query: 213 ARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSKSY 272
            +    A++                     ILY    +G +           P+++  SY
Sbjct: 315 VKEVNKAKS---------------------ILYTMSQRGVN-----------PDIQ--SY 340

Query: 273 VLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSM 332
            + I+ F +I +V  A  L+ EM     +     YNS+I   CK G I  A  L+ EM  
Sbjct: 341 NILIDGFCKIKKVDEAMNLFKEMHHKHIIPDVVTYNSLIDGLCKLGKISYALKLVDEMHD 400

Query: 333 NGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFA 392
            G  P+ ITY  +     K++ V++        + L+T  K +   P + T   +I+   
Sbjct: 401 RGVPPDIITYSSILDALCKNHQVDK-------AIALLTKLKDQGIRPNMYTYTILIDGLC 453

Query: 393 EKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKINDP--NLLRRMILGGARPDAE 450
           + G + +A N+FE+L    Y      Y  +I  +    + D    LL +M      PDA 
Sbjct: 454 KGGRLEDAHNIFEDLLVKGYNITVNTYTVMIHGFCNKGLFDEALALLSKMKDNSCIPDAV 513

Query: 451 TYSLL 455
           TY ++
Sbjct: 514 TYEII 518


>gi|218200911|gb|EEC83338.1| hypothetical protein OsI_28730 [Oryza sativa Indica Group]
 gi|258644730|dbj|BAI39975.1| putative fertility restorer homologue [Oryza sativa Indica Group]
          Length = 918

 Score = 90.1 bits (222), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 96/387 (24%), Positives = 156/387 (40%), Gaps = 35/387 (9%)

Query: 102 VIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKV 161
           +IA  D G  + +      M+  G   +   +  LI      G  K    +  +M  D V
Sbjct: 327 IIALCDMGCYEDAWRLFVDMKNKGCEPNVYTYTALISGLCVSGILKVAIGLFHRMSRDGV 386

Query: 162 APHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAET 221
            P+  T++ L+ I   +  I+    V + M R+   PN V+Y  +   + +      A  
Sbjct: 387 FPNTVTYNALINILVENRRIKYAFVVLNLMGRNGCSPNIVTYNEMIKGYCILGDPKKAML 446

Query: 222 YVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLE--RIWATVQELPNVRSK-SYVLAIEA 278
            +  + +     N  T + +I   GY   G      RI   +++      + SY   I  
Sbjct: 447 VMNNMLQRGHSANLVTYNTII--KGYCDSGNTTSALRILDLMRDGGCKPDEWSYTELICG 504

Query: 279 FGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPN 338
           F +I+++  A  L+ EM           Y ++I  YCK+  +D A+ LL+ M  +GC+PN
Sbjct: 505 FCKISKMESAFGLFNEMVDDGLCPNEVTYTALIDGYCKDEKLDTATSLLEHMKRSGCRPN 564

Query: 339 AITYRHLALGCFKSN-----------LVEEGF-----------------KALELGMKLIT 370
             TY  L  G  K N           ++EEG                   +  L +++  
Sbjct: 565 VQTYNVLIHGLTKQNNFSGAEELCKVMIEEGIFPNVVTYTAMIDGLCKNGSTSLALEMFN 624

Query: 371 TKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYV-KA 429
               +   P L T  S+I    ++G V  AENLF EL++         Y  +I+AY+   
Sbjct: 625 KMIEQGCLPNLLTYSSLIRALGQEGKVEEAENLFAELERHGLIPDEITYVKMIEAYIMSG 684

Query: 430 KINDP-NLLRRMILGGARPDAETYSLL 455
           K+    N L RMI  G +P   TY +L
Sbjct: 685 KVEHAFNFLGRMIKAGCQPTLWTYGVL 711



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 76/361 (21%), Positives = 144/361 (39%), Gaps = 45/361 (12%)

Query: 98  YNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMK 157
           Y+ L+I     G+    ++   +M   G   + L++N +I      G       I++++ 
Sbjct: 183 YSALLIHLSRLGMTAAVMDRYHRMLSEGVQPNLLIYNAVINALCKDGNVADAETIMKKVF 242

Query: 158 ADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYT 217
             +++P   T+  ++      H+++  ++V++ M +   EPN V+Y              
Sbjct: 243 ESEMSPDTFTYTSMILGHCRKHDLDSALQVFNQMAKEGCEPNTVTY-------------- 288

Query: 218 VAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSKSYVLAIE 277
              T +  L  S   N    L   +IL+G L                    + +    I 
Sbjct: 289 --STLINGLCDSGRVNEAFDLIREMILHGILPT------------------AHTCTGPII 328

Query: 278 AFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKP 337
           A   +     A  L+++M++         Y ++IS  C +G +  A GL   MS +G  P
Sbjct: 329 ALCDMGCYEDAWRLFVDMKNKGCEPNVYTYTALISGLCVSGILKVAIGLFHRMSRDGVFP 388

Query: 338 NAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDV 397
           N +TY  L     ++  ++  F  L L  +          +P + T   +I+ +   GD 
Sbjct: 389 NTVTYNALINILVENRRIKYAFVVLNLMGR-------NGCSPNIVTYNEMIKGYCILGDP 441

Query: 398 GNAENLFEELKKANYTKYTFVYNTLIKAYVKAKINDPNLLRRMIL---GGARPDAETYSL 454
             A  +   + +  ++     YNT+IK Y  +  N  + LR + L   GG +PD  +Y+ 
Sbjct: 442 KKAMLVMNNMLQRGHSANLVTYNTIIKGYCDSG-NTTSALRILDLMRDGGCKPDEWSYTE 500

Query: 455 L 455
           L
Sbjct: 501 L 501



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 68/310 (21%), Positives = 127/310 (40%), Gaps = 11/310 (3%)

Query: 60  PKELDYSYLLEFTIKNHGISQGEKLFCCIPKD--YQNELLYNNLVIACLDKGVIKLSLEY 117
           P  + Y+ L+   ++N  I     +   + ++    N + YN ++      G  K ++  
Sbjct: 388 PNTVTYNALINILVENRRIKYAFVVLNLMGRNGCSPNIVTYNEMIKGYCILGDPKKAMLV 447

Query: 118 MKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEAN 177
           M  M   GHS + + +N +I      G   +   IL  M+     P   ++  L+     
Sbjct: 448 MNNMLQRGHSANLVTYNTIIKGYCDSGNTTSALRILDLMRDGGCKPDEWSYTELICGFCK 507

Query: 178 DHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWST 237
              +E    ++++M    + PNEV+Y  L   +        A + +E +++S    N  T
Sbjct: 508 ISKMESAFGLFNEMVDDGLCPNEVTYTALIDGYCKDEKLDTATSLLEHMKRSGCRPNVQT 567

Query: 238 LDVLIILYGY-----LAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELW 292
            +VLI  +G       +  ++L ++       PNV   +Y   I+   +    S A E++
Sbjct: 568 YNVLI--HGLTKQNNFSGAEELCKVMIEEGIFPNV--VTYTAMIDGLCKNGSTSLALEMF 623

Query: 293 LEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKS 352
            +M     L     Y+S+I    + G +++A  L  E+  +G  P+ ITY  +      S
Sbjct: 624 NKMIEQGCLPNLLTYSSLIRALGQEGKVEEAENLFAELERHGLIPDEITYVKMIEAYIMS 683

Query: 353 NLVEEGFKAL 362
             VE  F  L
Sbjct: 684 GKVEHAFNFL 693



 Score = 43.9 bits (102), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 61/291 (20%), Positives = 114/291 (39%), Gaps = 16/291 (5%)

Query: 59  RPKELDYSYLLEFTIKNHGISQGEKLFCCIPKD--YQNELLYNNLVIACLDKGVIKLSLE 116
           RP    Y+ L+    K +  S  E+L   + ++  + N + Y  ++      G   L+LE
Sbjct: 562 RPNVQTYNVLIHGLTKQNNFSGAEELCKVMIEEGIFPNVVTYTAMIDGLCKNGSTSLALE 621

Query: 117 YMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEA 176
              KM   G   + L ++ LI      G+ +   N+  +++   + P   T+  +++   
Sbjct: 622 MFNKMIEQGCLPNLLTYSSLIRALGQEGKVEEAENLFAELERHGLIPDEITYVKMIEAYI 681

Query: 177 NDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWS 236
               +E        M ++  +P   +Y +L     +   Y +A+  + AL   +   N S
Sbjct: 682 MSGKVEHAFNFLGRMIKAGCQPTLWTYGVLI--KGLKNEYLLADQRLAALPDVVP--NCS 737

Query: 237 TLDVLIILYGYLAKGKDLERIW-ATVQEL-PNVRSKSYVLAIEAFGRIAQVSRAEELWLE 294
                   +GY    +D   +  A + EL P +  +     +       +   A EL   
Sbjct: 738 --------FGYQTTDQDAVSVMSAKLAELDPGLSVQVQNALVSNLSTAGRWFEANELLGS 789

Query: 295 MQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHL 345
           M S       E YNS++    +   +D A G+ K MS  GC+ +   Y+ L
Sbjct: 790 MISQGLCPDQEAYNSLLCSLLRVRNVDLAMGVFKHMSTQGCEVHLNGYKEL 840


>gi|449469490|ref|XP_004152453.1| PREDICTED: pentatricopeptide repeat-containing protein At1g74850,
           chloroplastic-like [Cucumis sativus]
          Length = 864

 Score = 89.7 bits (221), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 93/375 (24%), Positives = 161/375 (42%), Gaps = 54/375 (14%)

Query: 87  CIPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRR 146
           C P    NE +Y  ++     +G+++   E   +M   G   S   +  LI      G+ 
Sbjct: 144 CKP----NEHIYTIIISLLGREGLLEKCSEIFDEMASQGVIRSVFSYTALINAYGRNGQY 199

Query: 147 KTIPNILRQMKADKVAPHVSTFHILMKIEA-NDHNIEGLMKVYSDMKRSEVEPNEVSYCI 205
           +T   +L +MK ++V+P++ T++ ++   A  D + EGL+ ++++M+   V+P+ V+Y  
Sbjct: 200 ETSLELLERMKRERVSPNILTYNTVINACARGDLDWEGLLGLFAEMRHEGVQPDLVTYNT 259

Query: 206 LATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQE-- 263
           L +A A   L                                   G + E ++ T+ E  
Sbjct: 260 LLSACAARGL-----------------------------------GDEAEMVFKTMIEGG 284

Query: 264 -LPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDK 322
            +P + + SY+  +E FG++ ++ +   L  EM+S   L     YN +I  + K G I +
Sbjct: 285 IVPEITTYSYI--VETFGKLGKLEKVAMLLKEMESEGYLPDISSYNVLIEAHAKLGSIKE 342

Query: 323 ASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLE 382
           A  + K+M   GC PNA TY  L L  +  +   +  + L L M      K  S+ P   
Sbjct: 343 AMDVFKQMQAAGCVPNASTYSIL-LNLYGKHGRYDDVRELFLQM------KESSAEPDAT 395

Query: 383 TTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKINDP--NLLRRM 440
           T   +I +F E G       LF +L   N       Y  L+ A  K  +++    +L  M
Sbjct: 396 TYNILIRVFGEGGYFKEVVTLFHDLVDENIDPNMETYEGLVFACGKGGLHEDAKKILFHM 455

Query: 441 ILGGARPDAETYSLL 455
              G  P ++ YS L
Sbjct: 456 NGKGIVPSSKAYSGL 470



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 78/328 (23%), Positives = 136/328 (41%), Gaps = 12/328 (3%)

Query: 118 MKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEAN 177
           +K+M   G+      +N LI  ++  G  K   ++ +QM+A    P+ ST+ IL+ +   
Sbjct: 312 LKEMESEGYLPDISSYNVLIEAHAKLGSIKEAMDVFKQMQAAGCVPNASTYSILLNLYGK 371

Query: 178 DHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWST 237
               + + +++  MK S  EP+  +Y IL         +    T    L       N  T
Sbjct: 372 HGRYDDVRELFLQMKESSAEPDATTYNILIRVFGEGGYFKEVVTLFHDLVDENIDPNMET 431

Query: 238 LDVLIILYGYLAKGKDLERIWATVQELPNV-RSKSYVLAIEAFGRIAQVSRAEELWLEMQ 296
            + L+   G     +D ++I   +     V  SK+Y   IEA+G+ A    A   +  M 
Sbjct: 432 YEGLVFACGKGGLHEDAKKILFHMNGKGIVPSSKAYSGLIEAYGQAALYDEALVAFNTMN 491

Query: 297 SVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVE 356
            V      + YNS+I  + + G   +   +L  M   G   NA ++  +  G  +S   E
Sbjct: 492 EVGSKSTIDTYNSLIHTFARGGLYKEFEAILSRMREYGISRNAKSFSGIIEGYRQSGQYE 551

Query: 357 EGFKALELGMKLITTKKVRSSTPWLETTL-SIIEIFAEKGDVGNAENLFEELKKANYTKY 415
           E  KA       +  +K+R      E TL  ++ ++   G V  ++  F E+K +     
Sbjct: 552 EAIKA------FVEMEKMRCELD--EQTLEGVLGVYCFAGLVDESKEQFIEIKASGILPS 603

Query: 416 TFVYNTLIKAYVK-AKINDPN-LLRRMI 441
              Y  ++  Y K  + +D + LL  MI
Sbjct: 604 VLCYCMMLAVYAKNGRWDDASELLDEMI 631


>gi|224089372|ref|XP_002308709.1| predicted protein [Populus trichocarpa]
 gi|222854685|gb|EEE92232.1| predicted protein [Populus trichocarpa]
          Length = 1115

 Score = 89.7 bits (221), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 82/338 (24%), Positives = 146/338 (43%), Gaps = 12/338 (3%)

Query: 94  NELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNIL 153
           N   YN L+   L  G  K +LE  ++M   G   S   F+ L++ +      KT+  +L
Sbjct: 193 NAYSYNGLIHFLLQSGFCKEALEVYRRMVSEGLKPSLKTFSALMVASGKRRNIKTVMGLL 252

Query: 154 RQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVA 213
            +M++  + P++ T+ I +++   D  I+   ++   M      P+ V+Y +L  A   A
Sbjct: 253 EEMESMGLRPNIYTYTICIRVLGRDGKIDEAYRIMKRMDDDGCGPDVVTYTVLIDALCTA 312

Query: 214 RLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQE---LPNVRSK 270
           R    A      ++ S    +  T   L+  +        +E+IW  ++     P+V   
Sbjct: 313 RKLDDAMCLFTKMKSSSHKPDKVTYVTLLDKFSDCGHLDKVEKIWTEMEADGYAPDV--V 370

Query: 271 SYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEM 330
           ++ + + A  +  +++ A +L   M+    L     YN++IS   +   +D A  L   M
Sbjct: 371 TFTILVNALCKAGRINEAFDLLDTMRKQGVLPNLHTYNTLISGLLRANRLDDALDLFSNM 430

Query: 331 SMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEI 390
              G +P A TY  + L  +       G KALE   K+    K R   P +    + +  
Sbjct: 431 ESLGVEPTAYTY--ILLIDYHGKSGHPG-KALETFEKM----KARGIAPNIVACNASLYS 483

Query: 391 FAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVK 428
            AE G +G A+ +F ELK +     +  YN ++K Y K
Sbjct: 484 LAEMGRLGEAKAMFNELKSSGLAPDSVTYNMMMKCYSK 521



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 91/398 (22%), Positives = 163/398 (40%), Gaps = 48/398 (12%)

Query: 98  YNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMK 157
           YN L+     +G I+ +++  + M   G S + + FN L+              +  +M 
Sbjct: 582 YNILLAGLGKEGQIQKAVQLFESMNGHGCSPNTITFNTLLDCLCKNDEVDLALKMFYKMT 641

Query: 158 ADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCIL----ATAHAVA 213
                P V TF+ ++      + I+  + ++  MK+  + P+ V+ C L      +  + 
Sbjct: 642 TMNCRPDVLTFNTIIHGFIKQNQIKNAIWLFHQMKKL-LRPDHVTLCTLLPGVIKSGQIE 700

Query: 214 RLYTVAETYVEALEKSMTGNNWSTL-----------------------------DVLIIL 244
             + + E +   +  ++  + W  +                              VLI +
Sbjct: 701 DAFRITEDFFYQVGSNIDRSFWEDVMGGILTEAGTEKAILFGERLVCRAICKDDSVLIPI 760

Query: 245 YGYLAKGKDLE---RIWATVQELPNVRS--KSYVLAIEAFGRIAQVSRAEELWLEMQSVK 299
              L K K       ++    +   V+   K Y L I+ F  +  V  A  L+ EM+S  
Sbjct: 761 IKVLCKHKKTSVARNVFVKFTKELGVKPTLKVYNLLIDGFLEVHNVEVAWNLFEEMKSAG 820

Query: 300 QLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGF 359
               T  YNS+I  + K+G I++   L  EM   GCKPN ITY  +     KSN ++   
Sbjct: 821 CAPDTFTYNSLIDAHGKSGKINELFDLYDEMLTRGCKPNTITYNMVISNLVKSNRLD--- 877

Query: 360 KALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVY 419
           KA++L   L++     S TP   T   +I+   + G + +A  +F+ +        + +Y
Sbjct: 878 KAMDLYYNLVSGD--FSPTPC--TFGPLIDGLLKSGRLDDAHEMFDGMVHYGCRPNSAIY 933

Query: 420 NTLIKAYVKAKINDP--NLLRRMILGGARPDAETYSLL 455
           N L+  Y K    D      +RM+  G RPD ++Y++L
Sbjct: 934 NILVNGYGKLGHVDTACEFFKRMVKEGIRPDLKSYTIL 971



 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 82/348 (23%), Positives = 144/348 (41%), Gaps = 28/348 (8%)

Query: 120 KMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDH 179
           KM+   H    + +  L+   S  G    +  I  +M+AD  AP V TF IL+       
Sbjct: 324 KMKSSSHKPDKVTYVTLLDKFSDCGHLDKVEKIWTEMEADGYAPDVVTFTILVNALCKAG 383

Query: 180 NIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVA-RLYTVAETY--VEALEKSMTGNNWS 236
            I     +   M++  V PN  +Y  L +    A RL    + +  +E+L    T   + 
Sbjct: 384 RINEAFDLLDTMRKQGVLPNLHTYNTLISGLLRANRLDDALDLFSNMESLGVEPTAYTY- 442

Query: 237 TLDVLIILYGYLAKGKDLERIWATVQEL------PN-VRSKSYVLAIEAFGRIAQVSRAE 289
                I+L  Y  K     +   T +++      PN V   + + ++   GR+ +   A+
Sbjct: 443 -----ILLIDYHGKSGHPGKALETFEKMKARGIAPNIVACNASLYSLAEMGRLGE---AK 494

Query: 290 ELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGC 349
            ++ E++S      +  YN ++  Y K G +D+A  LL EMS   C+P+ I    L    
Sbjct: 495 AMFNELKSSGLAPDSVTYNMMMKCYSKVGQVDEAIKLLSEMSKVQCEPDVIVINSLIDTL 554

Query: 350 FKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKK 409
           +K+  VEE ++       +    +  +  P + T   ++    ++G +  A  LFE +  
Sbjct: 555 YKAGRVEEAWQ-------MFCRMEEMNLAPTVVTYNILLAGLGKEGQIQKAVQLFESMNG 607

Query: 410 ANYTKYTFVYNTLIKAYVKAKINDPNL--LRRMILGGARPDAETYSLL 455
              +  T  +NTL+    K    D  L    +M     RPD  T++ +
Sbjct: 608 HGCSPNTITFNTLLDCLCKNDEVDLALKMFYKMTTMNCRPDVLTFNTI 655



 Score = 73.2 bits (178), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 84/381 (22%), Positives = 154/381 (40%), Gaps = 17/381 (4%)

Query: 81   GEKLFC-CIPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIIL 139
            GE+L C  I KD  + +L   + + C  K        ++K  + LG   +  V+N LI  
Sbjct: 742  GERLVCRAICKD--DSVLIPIIKVLCKHKKTSVARNVFVKFTKELGVKPTLKVYNLLIDG 799

Query: 140  NSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPN 199
                   +   N+  +MK+   AP   T++ L+        I  L  +Y +M     +PN
Sbjct: 800  FLEVHNVEVAWNLFEEMKSAGCAPDTFTYNSLIDAHGKSGKINELFDLYDEMLTRGCKPN 859

Query: 200  EVSY-CILATAHAVARLYTVAETYVEAL--EKSMTGNNWSTLDVLIILYGYLAKGKDLER 256
             ++Y  +++      RL    + Y   +  + S T   +  L   ++  G L    ++  
Sbjct: 860  TITYNMVISNLVKSNRLDKAMDLYYNLVSGDFSPTPCTFGPLIDGLLKSGRLDDAHEMFD 919

Query: 257  IWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCK 316
                    PN  S  Y + +  +G++  V  A E +  M         + Y  ++ + C 
Sbjct: 920  GMVHYGCRPN--SAIYNILVNGYGKLGHVDTACEFFKRMVKEGIRPDLKSYTILVDILCI 977

Query: 317  NGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRS 376
             G +D A    +++   G  P+ + Y  +  G  +S   EE        + L    + R 
Sbjct: 978  AGRVDDALHYFEKLKQAGLDPDLVAYNLMINGLGRSQRTEE-------ALSLFHEMQNRG 1030

Query: 377  STPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKINDP-- 434
              P L T  S+I      G +  A  ++EEL+        F YN LI+ Y  +  ++   
Sbjct: 1031 IVPDLYTYNSLILNLGIVGMIEEAGKIYEELQFIGLKPNVFTYNALIRGYTLSGNSELAY 1090

Query: 435  NLLRRMILGGARPDAETYSLL 455
             + ++M++GG  P+  T++ L
Sbjct: 1091 GIYKKMMVGGCDPNTGTFAQL 1111



 Score = 58.5 bits (140), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 64/309 (20%), Positives = 128/309 (41%), Gaps = 17/309 (5%)

Query: 58  YRPKELDYSYLLEFTIKNHGISQGEKLFCCIPKD--YQNELLYNNLVIACLDKGVIKLSL 115
           Y P  + ++ L+    K   I++   L   + K     N   YN L+   L    +  +L
Sbjct: 365 YAPDVVTFTILVNALCKAGRINEAFDLLDTMRKQGVLPNLHTYNTLISGLLRANRLDDAL 424

Query: 116 EYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIE 175
           +    M  LG   +   +  LI  +   G          +MKA  +AP++   +  +   
Sbjct: 425 DLFSNMESLGVEPTAYTYILLIDYHGKSGHPGKALETFEKMKARGIAPNIVACNASLYSL 484

Query: 176 ANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNW 235
           A    +     +++++K S + P+ V+Y ++   ++       A   +  + K       
Sbjct: 485 AEMGRLGEAKAMFNELKSSGLAPDSVTYNMMMKCYSKVGQVDEAIKLLSEMSKVQ----- 539

Query: 236 STLDVLII--LYGYLAKGKDLERIW---ATVQEL---PNVRSKSYVLAIEAFGRIAQVSR 287
              DV++I  L   L K   +E  W     ++E+   P V + + +LA    G+  Q+ +
Sbjct: 540 CEPDVIVINSLIDTLYKAGRVEEAWQMFCRMEEMNLAPTVVTYNILLA--GLGKEGQIQK 597

Query: 288 AEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLAL 347
           A +L+  M        T  +N+++   CKN  +D A  +  +M+   C+P+ +T+  +  
Sbjct: 598 AVQLFESMNGHGCSPNTITFNTLLDCLCKNDEVDLALKMFYKMTTMNCRPDVLTFNTIIH 657

Query: 348 GCFKSNLVE 356
           G  K N ++
Sbjct: 658 GFIKQNQIK 666



 Score = 52.0 bits (123), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 66/315 (20%), Positives = 130/315 (41%), Gaps = 49/315 (15%)

Query: 181 IEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKS---MTGNNWST 237
           +E +  V+  M+R  +  N  +Y I+  +  +      A + +E + ++   +   +++ 
Sbjct: 140 VEDMAFVFDLMQRQIIRRNVDTYLIIFKSLFIRGGLRQAPSALEKMREAGFVLNAYSYNG 199

Query: 238 LDVLIILYGYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQS 297
           L   ++  G+  +  ++ R   +    P++++ S ++   A G+   +     L  EM+S
Sbjct: 200 LIHFLLQSGFCKEALEVYRRMVSEGLKPSLKTFSALMV--ASGKRRNIKTVMGLLEEMES 257

Query: 298 VKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEE 357
           +        Y   I V  ++G ID+A  ++K M  +GC P+ +TY  L      +     
Sbjct: 258 MGLRPNIYTYTICIRVLGRDGKIDEAYRIMKRMDDDGCGPDVVTYTVLIDALCTA----- 312

Query: 358 GFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTK--Y 415
             + L+  M L T  K  S  P   T +++++ F++ G +   E ++ E++   Y     
Sbjct: 313 --RKLDDAMCLFTKMKSSSHKPDKVTYVTLLDKFSDCGHLDKVEKIWTEMEADGYAPDVV 370

Query: 416 TFV---------------------------------YNTLIKAYVKA-KINDP-NLLRRM 440
           TF                                  YNTLI   ++A +++D  +L   M
Sbjct: 371 TFTILVNALCKAGRINEAFDLLDTMRKQGVLPNLHTYNTLISGLLRANRLDDALDLFSNM 430

Query: 441 ILGGARPDAETYSLL 455
              G  P A TY LL
Sbjct: 431 ESLGVEPTAYTYILL 445



 Score = 48.9 bits (115), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 61/304 (20%), Positives = 116/304 (38%), Gaps = 15/304 (4%)

Query: 54   RERPYRPKELDYSYLLEFTIKNHGISQGEKLF------CCIPKDYQNELLYNNLVIACLD 107
            +E   +P    Y+ L++  ++ H +     LF       C P  +     YN+L+ A   
Sbjct: 782  KELGVKPTLKVYNLLIDGFLEVHNVEVAWNLFEEMKSAGCAPDTFT----YNSLIDAHGK 837

Query: 108  KGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVST 167
             G I    +   +M   G   + + +N +I       R     ++   + +   +P   T
Sbjct: 838  SGKINELFDLYDEMLTRGCKPNTITYNMVISNLVKSNRLDKAMDLYYNLVSGDFSPTPCT 897

Query: 168  FHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALE 227
            F  L+        ++   +++  M      PN   Y IL   +        A  + + + 
Sbjct: 898  FGPLIDGLLKSGRLDDAHEMFDGMVHYGCRPNSAIYNILVNGYGKLGHVDTACEFFKRMV 957

Query: 228  KSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQEL---PNVRSKSYVLAIEAFGRIAQ 284
            K     +  +  +L+ +     +  D    +  +++    P++   +Y L I   GR  +
Sbjct: 958  KEGIRPDLKSYTILVDILCIAGRVDDALHYFEKLKQAGLDPDL--VAYNLMINGLGRSQR 1015

Query: 285  VSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRH 344
               A  L+ EMQ+   +     YNS+I      G I++A  + +E+   G KPN  TY  
Sbjct: 1016 TEEALSLFHEMQNRGIVPDLYTYNSLILNLGIVGMIEEAGKIYEELQFIGLKPNVFTYNA 1075

Query: 345  LALG 348
            L  G
Sbjct: 1076 LIRG 1079


>gi|357499033|ref|XP_003619805.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355494820|gb|AES76023.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 548

 Score = 89.7 bits (221), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 102/446 (22%), Positives = 193/446 (43%), Gaps = 43/446 (9%)

Query: 33  INRLRKLQLNKRALEVMEWVIRERPYRPKELDYSYLLE-FTIKNH----------GISQG 81
           IN   +L LN  +  +   +++ + Y P  + ++ L++   +K H           ++QG
Sbjct: 103 INCFSQLGLNSLSFSIFAKILK-KGYHPTAITFNTLIKGLCLKGHIHQALHFHDKVVAQG 161

Query: 82  EKLFCCIPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSI--SYLVFNRLIIL 139
             L         +++ Y  L+      G I  +L+ +K  RV G  +  + +++N +I  
Sbjct: 162 FHL---------DQVSYGTLINGLCKVGRITAALQLLK--RVDGKLVQPNAVMYNMIIDN 210

Query: 140 NSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPN 199
                      ++  QM A ++ P V T++ L+   +    +   + +++ MK+  + PN
Sbjct: 211 MCKAKLVNDAFDLYSQMVAKRICPDVFTYNALISGFSAVSKLNYAIDLFNKMKKENINPN 270

Query: 200 EVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLA-----KGKDL 254
             ++ IL            A+  +  + K     +  T + L  + GY +     K KD+
Sbjct: 271 VYTFNILVDGFCKEGKVNDAKVVLAIMMKDDIKPDVVTYNSL--MDGYCSINKVNKAKDI 328

Query: 255 ERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVY 314
               A+   + NV+   Y   +  F +I  V  A  L+ EM+  K +     Y+S+I   
Sbjct: 329 FDSMASGGVIANVQI--YTTMVNGFCKIKMVDEAINLFEEMRCRKIIPNVVTYSSLIDGL 386

Query: 315 CKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKV 374
           CK G I  A  L+ EM   G  PN +TY  +     K++ V++        + L+T  K 
Sbjct: 387 CKLGRIFYALKLVDEMHDRGQPPNIVTYSSILDALCKNHHVDKA-------IALLTNLKD 439

Query: 375 RSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKINDP 434
           +   P + T   +I+   + G + +A+N+FE+L    Y    + Y  +I+ +      D 
Sbjct: 440 QGIRPDMYTYTILIKGLCQSGRLEDAQNVFEDLLVKGYNLDVYAYTVMIQGFCDKGFFDK 499

Query: 435 NL--LRRMILGGARPDAETYSLLKLA 458
            L  L +M   G  P+A+TY L+ L+
Sbjct: 500 ALALLSKMEDNGCIPNAKTYELVILS 525



 Score = 49.3 bits (116), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 46/228 (20%), Positives = 97/228 (42%), Gaps = 9/228 (3%)

Query: 131 LVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSD 190
           + +N L+    S  +     +I   M +  V  +V  +  ++        ++  + ++ +
Sbjct: 307 VTYNSLMDGYCSINKVNKAKDIFDSMASGGVIANVQIYTTMVNGFCKIKMVDEAINLFEE 366

Query: 191 MKRSEVEPNEVSYCILATAHA-VARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLA 249
           M+  ++ PN V+Y  L      + R++   +   E  ++    N  +   +L      L 
Sbjct: 367 MRCRKIIPNVVTYSSLIDGLCKLGRIFYALKLVDEMHDRGQPPNIVTYSSIL----DALC 422

Query: 250 KGKDLERIWATVQELPN--VRSK--SYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATE 305
           K   +++  A +  L +  +R    +Y + I+   +  ++  A+ ++ ++          
Sbjct: 423 KNHHVDKAIALLTNLKDQGIRPDMYTYTILIKGLCQSGRLEDAQNVFEDLLVKGYNLDVY 482

Query: 306 QYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSN 353
            Y  +I  +C  GF DKA  LL +M  NGC PNA TY  + L  F+ +
Sbjct: 483 AYTVMIQGFCDKGFFDKALALLSKMEDNGCIPNAKTYELVILSLFEKD 530


>gi|224064562|ref|XP_002301516.1| predicted protein [Populus trichocarpa]
 gi|222843242|gb|EEE80789.1| predicted protein [Populus trichocarpa]
          Length = 476

 Score = 89.7 bits (221), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 107/453 (23%), Positives = 196/453 (43%), Gaps = 28/453 (6%)

Query: 7   GEPVGSAFQSWMREGFPVHRGEIFHSINRLRKLQLNKRALEVMEWVIRERPYRPKELDYS 66
           G  V       + EG    +  +   I +LRK      A+EVMEW +++R      +D++
Sbjct: 12  GGSVSKTLNELILEGGKTSKINLTTCIKKLRKYGRFDHAIEVMEW-MQKRKMNFSHVDHA 70

Query: 67  YLLEFTIKNHGISQGEKLFCCIPKDYQNELLYNNLVIACLDKGVIK---LSL-EYMKKMR 122
             L+ T K  GI+  E  F  +P   QN + Y+ L + C  K ++    L+L E M KM+
Sbjct: 71  VYLDLTAKTKGIAAAENYFDNLPPSVQNHVTYSTL-LNCYCKELMSEKALTLFEKMDKMK 129

Query: 123 VLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIE 182
           +L  S+    FN L+ L+   G+ + +  I+++MK   V+P   T++I M+     ++ E
Sbjct: 130 LLSTSMP---FNNLMTLHMRLGQPEKVLGIVQEMKQRGVSPGTFTYNIWMQSYGCLNDFE 186

Query: 183 GLMKVYSDMKRSEVEP-NEVSYCILATAHAVARLYTVAETYVEALEKSMTGN-------- 233
           G+ +V  +MK    E  +  +Y  LAT +  A L+  AE+ +  LE+ +           
Sbjct: 187 GVQRVLDEMKTDGKENFSWTTYSNLATIYVKAGLFDKAESALRKLEEQIECGRDCDFQKK 246

Query: 234 -----NWSTLDVLIILYGYLAKGKDLERIWATVQ-ELPNVRSKSYVLAIEAFGRIAQVSR 287
                +      LI LY   +   ++ R+W +++       + SY+  ++A  ++  V  
Sbjct: 247 RRHDADREAYHFLISLYAGTSNLSEVHRVWNSLKSSFRTTTNISYLNVLQALAKLKDVEG 306

Query: 288 AEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLAL 347
             + + E +S          N  I    ++   ++A+ +  E ++   K      R + +
Sbjct: 307 ILKCFKEWESSCHSYDMGLANVAIRACLEHDMYEEAASIFDE-ALKRTKGLFFKAREMFM 365

Query: 348 GCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEEL 407
             F  N   +   AL+      +  K     P  +T  + +  F +  DV  AE L +  
Sbjct: 366 VFFLKN--HQPDLALKHMKAAFSEAKEIEWQPDQKTVSAFLNYFEDGKDVDGAERLCKIW 423

Query: 408 KKANYTKYTFVYNTLIKAYVKAKINDPNLLRRM 440
           K+ N    +  Y  L+K Y  A    P + +R+
Sbjct: 424 KQINRLN-SNAYILLLKTYTAAGRLAPEMRQRL 455


>gi|356518209|ref|XP_003527773.1| PREDICTED: pentatricopeptide repeat-containing protein At4g31850,
            chloroplastic-like [Glycine max]
          Length = 1113

 Score = 89.7 bits (221), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 75/308 (24%), Positives = 138/308 (44%), Gaps = 18/308 (5%)

Query: 155  QMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVAR 214
            +MK     P++ T+++L+        I+ L ++Y++M     +PN +++ I+ +A   + 
Sbjct: 813  EMKNAGCCPNIFTYNLLLDAHGKSKRIDELFELYNEMLCRGCKPNIITHNIIISALVKSN 872

Query: 215  LYTVA-ETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSKS-- 271
                A + Y E +    +G+   T      L G L K    E      +E+P+ + K   
Sbjct: 873  SINKALDLYYEII----SGDFSPTPCTYGPLIGGLLKAGRSEEAMKIFEEMPDYQCKPNC 928

Query: 272  --YVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKE 329
              Y + I  FG+   V+ A +L+  M         + Y  ++      G +D A    +E
Sbjct: 929  AIYNILINGFGKAGNVNIACDLFKRMIKEGIRPDLKSYTILVECLFMTGRVDDAVHYFEE 988

Query: 330  MSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIE 389
            + + G  P+ ++Y  +  G  KS  +EE        + L +  K R  +P L T  ++I 
Sbjct: 989  LKLTGLDPDTVSYNLMINGLGKSRRLEEA-------LSLFSEMKNRGISPELYTYNALIL 1041

Query: 390  IFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKINDP--NLLRRMILGGARP 447
             F   G V  A  +FEEL+        F YN LI+ + K+   D   ++ ++M++ G  P
Sbjct: 1042 HFGNAGMVDQAGKMFEELQFMGLEPNVFTYNALIRGHSKSGNKDRAFSVFKKMMIVGCSP 1101

Query: 448  DAETYSLL 455
            +A T++ L
Sbjct: 1102 NAGTFAQL 1109



 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 82/374 (21%), Positives = 142/374 (37%), Gaps = 35/374 (9%)

Query: 108 KGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVST 167
           KG I+ +   + KMR  G  ++   +N LI     PG  K    + ++M ++ + P + T
Sbjct: 170 KGGIRQAPFALGKMRQAGFVLNAYSYNGLIYFLLQPGFCKEALKVYKRMISEGLKPSMKT 229

Query: 168 FHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALE 227
           +  LM       +   +M +  +M+   + PN  +Y I       A     A   ++ +E
Sbjct: 230 YSALMVALGRRRDTGTIMDLLEEMETLGLRPNIYTYTICIRVLGRAGRIDDAYGILKTME 289

Query: 228 KSMTGNNWSTLDVLI---ILYGYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQ 284
               G +  T  VLI      G L K K+L          P++ +  Y+  +  FG    
Sbjct: 290 DEGCGPDVVTYTVLIDALCAAGKLDKAKELYTKMRASSHKPDLVT--YITLMSKFGNYGD 347

Query: 285 VSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRH 344
           +   +  W EM++         Y  ++   CK+G +D+A  +L  M + G  PN  TY  
Sbjct: 348 LETVKRFWSEMEADGYAPDVVTYTILVEALCKSGKVDQAFDMLDVMRVRGIVPNLHTYNT 407

Query: 345 LALGCFKSNLVEEGFKAL----------------------------ELGMKLITTKKVRS 376
           L  G      ++E  +                              E  +      K R 
Sbjct: 408 LISGLLNLRRLDEALELFNNMESLGVAPTAYSYVLFIDYYGKLGDPEKALDTFEKMKKRG 467

Query: 377 STPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKIND--P 434
             P +    + +   AE G +  A+++F ++     +  +  YN ++K Y KA   D   
Sbjct: 468 IMPSIAACNASLYSLAEMGRIREAKDIFNDIHNCGLSPDSVTYNMMMKCYSKAGQIDKAT 527

Query: 435 NLLRRMILGGARPD 448
            LL  M+  G  PD
Sbjct: 528 KLLTEMLSEGCEPD 541



 Score = 79.0 bits (193), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 93/409 (22%), Positives = 165/409 (40%), Gaps = 41/409 (10%)

Query: 59  RPKELDYSYLLEFTIKNHGISQGEKLFCCIPKDYQNELLYNNLVIACLDKGVIKLSLEYM 118
           R   +D +Y +  T+++ G         C P    + + Y  L+ A    G +  + E  
Sbjct: 274 RAGRIDDAYGILKTMEDEG---------CGP----DVVTYTVLIDALCAAGKLDKAKELY 320

Query: 119 KKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEAND 178
            KMR   H    + +  L+    + G  +T+     +M+AD  AP V T+ IL++     
Sbjct: 321 TKMRASSHKPDLVTYITLMSKFGNYGDLETVKRFWSEMEADGYAPDVVTYTILVEALCKS 380

Query: 179 HNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTL 238
             ++    +   M+   + PN  +Y  L +     R         EALE     NN  +L
Sbjct: 381 GKVDQAFDMLDVMRVRGIVPNLHTYNTLISGLLNLRRLD------EALE---LFNNMESL 431

Query: 239 DVLIILYGYL------AKGKDLERIWATVQELPNVRSKSYVLAIEA----FGRIAQVSRA 288
            V    Y Y+       K  D E+   T +++        + A  A       + ++  A
Sbjct: 432 GVAPTAYSYVLFIDYYGKLGDPEKALDTFEKMKKRGIMPSIAACNASLYSLAEMGRIREA 491

Query: 289 EELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALG 348
           ++++ ++ +      +  YN ++  Y K G IDKA+ LL EM   GC+P+ I    L   
Sbjct: 492 KDIFNDIHNCGLSPDSVTYNMMMKCYSKAGQIDKATKLLTEMLSEGCEPDIIVVNSLIDT 551

Query: 349 CFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELK 408
            +K+  V+E +       ++    K     P + T   +I    ++G +  A +LF  +K
Sbjct: 552 LYKAGRVDEAW-------QMFGRLKDLKLAPTVVTYNILITGLGKEGKLLKALDLFGSMK 604

Query: 409 KANYTKYTFVYNTLIKAYVKAKINDPNL--LRRMILGGARPDAETYSLL 455
           ++     T  +N L+    K    D  L    RM +    PD  TY+ +
Sbjct: 605 ESGCPPNTVTFNALLDCLCKNDAVDLALKMFCRMTIMNCSPDVLTYNTI 653



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 91/372 (24%), Positives = 157/372 (42%), Gaps = 23/372 (6%)

Query: 94  NELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNIL 153
           N + +N L+        + L+L+   +M ++  S   L +N +I      GR        
Sbjct: 611 NTVTFNALLDCLCKNDAVDLALKMFCRMTIMNCSPDVLTYNTIIYGLIKEGRAGYAFWFY 670

Query: 154 RQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVY------SDMKRSEVEPNEVSYCILA 207
            QMK      HV+ + +L  +   D  +E  +K+       S ++ S     E+  CIL 
Sbjct: 671 HQMKKFLSPDHVTLYTLLPGV-VKDGRVEDAIKIVMEFVHQSGLQTSNQVWGELMECILI 729

Query: 208 TAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNV 267
            A         A ++ E L  +    + + +  LI +     K  D ++++    +    
Sbjct: 730 EAEIEE-----AISFAEGLVCNSICQDDNLILPLIRVLCKQKKALDAKKLFDKFTKSLGT 784

Query: 268 RS--KSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASG 325
               +SY   ++          A +L++EM++         YN ++  + K+  ID+   
Sbjct: 785 HPTPESYNCLMDGLLGCNITEAALKLFVEMKNAGCCPNIFTYNLLLDAHGKSKRIDELFE 844

Query: 326 LLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTL 385
           L  EM   GCKPN IT+  +     KSN +    KAL+L  ++I+     S TP   T  
Sbjct: 845 LYNEMLCRGCKPNIITHNIIISALVKSNSIN---KALDLYYEIISGD--FSPTPC--TYG 897

Query: 386 SIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKA-KIN-DPNLLRRMILG 443
            +I    + G    A  +FEE+          +YN LI  + KA  +N   +L +RMI  
Sbjct: 898 PLIGGLLKAGRSEEAMKIFEEMPDYQCKPNCAIYNILINGFGKAGNVNIACDLFKRMIKE 957

Query: 444 GARPDAETYSLL 455
           G RPD ++Y++L
Sbjct: 958 GIRPDLKSYTIL 969



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 55/211 (26%), Positives = 95/211 (45%), Gaps = 9/211 (4%)

Query: 144  GRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSY 203
            GR +    I  +M   +  P+ + ++IL+       N+     ++  M +  + P+  SY
Sbjct: 907  GRSEEAMKIFEEMPDYQCKPNCAIYNILINGFGKAGNVNIACDLFKRMIKEGIRPDLKSY 966

Query: 204  CILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQE 263
             IL     +      A  Y E L+  +TG +  T+   +++ G L K + LE   +   E
Sbjct: 967  TILVECLFMTGRVDDAVHYFEELK--LTGLDPDTVSYNLMING-LGKSRRLEEALSLFSE 1023

Query: 264  LPNVRSKS-----YVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNG 318
            + N R  S     Y   I  FG    V +A +++ E+Q +        YN++I  + K+G
Sbjct: 1024 MKN-RGISPELYTYNALILHFGNAGMVDQAGKMFEELQFMGLEPNVFTYNALIRGHSKSG 1082

Query: 319  FIDKASGLLKEMSMNGCKPNAITYRHLALGC 349
              D+A  + K+M + GC PNA T+  L   C
Sbjct: 1083 NKDRAFSVFKKMMIVGCSPNAGTFAQLPNKC 1113



 Score = 56.2 bits (134), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 59/310 (19%), Positives = 127/310 (40%), Gaps = 20/310 (6%)

Query: 58  YRPKELDYSYLLEFTIKNHGISQGEKLFCC--IPKDYQNELLYNNLVIACLDKGVIKLSL 115
           Y P  + Y+ L+E   K+  + Q   +     +     N   YN L+   L+   +  +L
Sbjct: 363 YAPDVVTYTILVEALCKSGKVDQAFDMLDVMRVRGIVPNLHTYNTLISGLLNLRRLDEAL 422

Query: 116 EYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIE 175
           E    M  LG + +   +   I      G  +   +   +MK   + P ++  +  +   
Sbjct: 423 ELFNNMESLGVAPTAYSYVLFIDYYGKLGDPEKALDTFEKMKKRGIMPSIAACNASLYSL 482

Query: 176 ANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVA-RLYTVAETYVEALEKSMTGNN 234
           A    I     +++D+    + P+ V+Y ++   ++ A ++    +   E L +      
Sbjct: 483 AEMGRIREAKDIFNDIHNCGLSPDSVTYNMMMKCYSKAGQIDKATKLLTEMLSEG----- 537

Query: 235 WSTLDVLII--LYGYLAKGKDLERIWATVQELPNVRSK----SYVLAIEAFGRIAQVSRA 288
               D++++  L   L K   ++  W     L +++      +Y + I   G+  ++ +A
Sbjct: 538 -CEPDIIVVNSLIDTLYKAGRVDEAWQMFGRLKDLKLAPTVVTYNILITGLGKEGKLLKA 596

Query: 289 EELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALG 348
            +L+  M+       T  +N+++   CKN  +D A  +   M++  C P+ +TY  +  G
Sbjct: 597 LDLFGSMKESGCPPNTVTFNALLDCLCKNDAVDLALKMFCRMTIMNCSPDVLTYNTIIYG 656

Query: 349 CFKSNLVEEG 358
                L++EG
Sbjct: 657 -----LIKEG 661


>gi|357499659|ref|XP_003620118.1| Pentatricopeptide repeat protein-like protein [Medicago truncatula]
 gi|355495133|gb|AES76336.1| Pentatricopeptide repeat protein-like protein [Medicago truncatula]
          Length = 841

 Score = 89.4 bits (220), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 88/368 (23%), Positives = 152/368 (41%), Gaps = 49/368 (13%)

Query: 96  LLYNNLVIA-CLDKGVIKLSLEYMKKM--RVLGHSISYLVFNRLIILNSSPGRRKTIPNI 152
           ++YN ++   C DK V      Y +K+  R+     +Y   N LI      G+ K   ++
Sbjct: 334 VMYNTIIDGMCKDKHVNDAFDLYSEKVSKRIFPDVFTY---NALISGFCIVGKLKDAIDL 390

Query: 153 LRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAV 212
             +M +  + P V TF IL+     D NI+    V + M +  ++P+ V+Y  L   + +
Sbjct: 391 FNKMTSKNIIPDVYTFSILVDGFCKDGNIKEAKNVLAMMMKQSIKPDVVTYSSLMDGYCL 450

Query: 213 ARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSKSY 272
                 AE+    +                              + A VQ        SY
Sbjct: 451 VNEVNKAESIFNTMSH--------------------------RGVTANVQ--------SY 476

Query: 273 VLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSM 332
            + I  F +I  V  A +L+ EM   +       Y+S+I   CK+G I  A  L+ EM  
Sbjct: 477 NIMINGFCKIKMVDEAMKLFKEMHHKQIFPDVITYSSLIDGLCKSGRISYALELVDEMHY 536

Query: 333 NGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFA 392
            G +P+ ITY  +     K + V++        + L+T  K +   P + T   +++   
Sbjct: 537 RGQQPDIITYNSILDALCKKHHVDKA-------ITLLTKLKGQGIRPDMNTYTILVKGLC 589

Query: 393 EKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKINDPNL--LRRMILGGARPDAE 450
           + G + +A  +FE+L    Y    + Y  +I+ +    + D  L  L +M   G  PDA+
Sbjct: 590 QSGKLEDARKVFEDLLVKGYNLDVYAYTVMIQGFCDKGLFDEALALLSKMEENGCIPDAK 649

Query: 451 TYSLLKLA 458
           TY ++ L+
Sbjct: 650 TYEIIILS 657


>gi|449511869|ref|XP_004164076.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g48810-like [Cucumis sativus]
          Length = 660

 Score = 89.4 bits (220), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 92/412 (22%), Positives = 168/412 (40%), Gaps = 39/412 (9%)

Query: 60  PKELDYSYLLEFTIKNHGISQGEKLFC------CIPKDYQNELLYNNLVIACLDKGVIKL 113
           P    Y+ LL+   KN  +    KLF       C P    + + Y  +V +    G I  
Sbjct: 177 PNVFTYNILLKALCKNDRVDAAHKLFVEMSNKGCPP----DAVTYTTMVSSLCKAGKIDD 232

Query: 114 SLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMK 173
           + E   + +      S  V+N LI      GR +    +L +M  + V P+V ++  ++ 
Sbjct: 233 ARELAGRFKP-----SVPVYNALIDGMCKEGRIEVAIKLLGEMMDNGVDPNVVSYSCIIN 287

Query: 174 IEANDHNIEGLMKVYSDMKRSEVEPNEVSYC-ILATAHAVARLYTVAETYVEALEKSMTG 232
                 N+E    +++ M     + N  ++  ++       +LY   + +   ++     
Sbjct: 288 SLCVSGNVELAFALFAQMFLRGCDANIHTFTPLIKGCFMRGKLYEALDLWKLMIQDGCEP 347

Query: 233 N--NWSTLDVLIILYGYLAKGKDLERIWATVQE-----LPNVRSKSYVLAIEAFGRIAQV 285
           N   ++TL     ++G  + G   E +    Q      LPNV   +Y + I+ F +   +
Sbjct: 348 NVVAYNTL-----IHGLCSNGSLEEALQVCDQMQRSGCLPNV--TTYSILIDGFAKSGDL 400

Query: 286 SRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHL 345
             A E W  M S         Y  ++ V CKN   D+A+ L+++M++ GC PN IT+   
Sbjct: 401 VGASETWNRMISHGCRPNVVTYTCMVDVLCKNSMFDQANSLVEKMTLEGCTPNTITFNT- 459

Query: 346 ALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFE 405
               F   L   G   +E  MKL+   +     P + T   +++          A  LF+
Sbjct: 460 ----FIKGLCGNG--RVEWAMKLLERMQGHGCLPNITTYNELLDALFRMNKYEEAFGLFQ 513

Query: 406 ELKKANYTKYTFVYNTLIKAYVKAKINDP--NLLRRMILGGARPDAETYSLL 455
           E++  N       YNT++  + +A +      L  + ++ G  PD+ TY+ +
Sbjct: 514 EIEARNLQPNLVTYNTVLYGFSRAGMMGEALQLFGKALVRGTAPDSITYNTM 565



 Score = 73.2 bits (178), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 85/406 (20%), Positives = 160/406 (39%), Gaps = 61/406 (15%)

Query: 52  VIRERPYRPKELDYSYLLEFTIKNHGISQGEKLFCCIPKDYQNELLYNNLVIACLDKGVI 111
           V+ ER  R  E+D    +   +K  GI+  E LF CI   Y+               G  
Sbjct: 79  VMIERLGRECEMDMVQYILQQMKMDGINCCEDLFICIINGYKR-------------VGSA 125

Query: 112 KLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHIL 171
           + +L+   ++   G   +  ++N L+    S  + + I  +   MK D + P+V T++IL
Sbjct: 126 EQALKMFYRIGEFGCKPTVRIYNHLLDALLSENKFQMINPLYTNMKKDGLIPNVFTYNIL 185

Query: 172 MKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMT 231
           +K    +  ++   K++ +M      P+ V+Y                 T V +L K+  
Sbjct: 186 LKALCKNDRVDAAHKLFVEMSNKGCPPDAVTY----------------TTMVSSLCKA-- 227

Query: 232 GNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEEL 291
                         G +   ++L   +      P+V    Y   I+   +  ++  A +L
Sbjct: 228 --------------GKIDDARELAGRFK-----PSV--PVYNALIDGMCKEGRIEVAIKL 266

Query: 292 WLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFK 351
             EM           Y+ +I+  C +G ++ A  L  +M + GC  N  T+  L  GCF 
Sbjct: 267 LGEMMDNGVDPNVVSYSCIINSLCVSGNVELAFALFAQMFLRGCDANIHTFTPLIKGCFM 326

Query: 352 SNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKAN 411
              +   ++AL+L   +I         P +    ++I      G +  A  + ++++++ 
Sbjct: 327 RGKL---YEALDLWKLMIQD----GCEPNVVAYNTLIHGLCSNGSLEEALQVCDQMQRSG 379

Query: 412 YTKYTFVYNTLIKAYVKAK--INDPNLLRRMILGGARPDAETYSLL 455
                  Y+ LI  + K+   +       RMI  G RP+  TY+ +
Sbjct: 380 CLPNVTTYSILIDGFAKSGDLVGASETWNRMISHGCRPNVVTYTCM 425



 Score = 41.2 bits (95), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 42/188 (22%), Positives = 76/188 (40%), Gaps = 12/188 (6%)

Query: 269 SKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLK 328
           + +Y + IE  GR  ++   + +  +M+        + +  +I+ Y + G  ++A  +  
Sbjct: 74  ASTYRVMIERLGRECEMDMVQYILQQMKMDGINCCEDLFICIINGYKRVGSAEQALKMFY 133

Query: 329 EMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSII 388
            +   GCKP    Y HL      + L E  F+ +     L T  K     P + T   ++
Sbjct: 134 RIGEFGCKPTVRIYNHL----LDALLSENKFQMIN---PLYTNMKKDGLIPNVFTYNILL 186

Query: 389 EIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKA-KINDPNLLRRMILGGARP 447
           +   +   V  A  LF E+           Y T++ +  KA KI+D     R + G  +P
Sbjct: 187 KALCKNDRVDAAHKLFVEMSNKGCPPDAVTYTTMVSSLCKAGKIDDA----RELAGRFKP 242

Query: 448 DAETYSLL 455
               Y+ L
Sbjct: 243 SVPVYNAL 250


>gi|413953163|gb|AFW85812.1| hypothetical protein ZEAMMB73_202457 [Zea mays]
          Length = 731

 Score = 89.4 bits (220), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 92/410 (22%), Positives = 179/410 (43%), Gaps = 27/410 (6%)

Query: 58  YRPKELDYSYLLEFTIKNHGISQGEKLFCCIPKD--YQNELLYNNLVIACLDKGVIKLSL 115
           Y P  L Y+ +L   + +  ++   + F  +  D    N   YN LV A   +G  K +L
Sbjct: 152 YVPSVLAYNAVL-LALSDASLTSARRFFDSMLSDGVAPNVYTYNILVRALCGRGHRKEAL 210

Query: 116 EYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIE 175
             ++ MR  G   + + +N L+      G       ++  M+   + P++ TF+ ++   
Sbjct: 211 SILRDMRGAGCGPNVVTYNTLVAAFFRAGEVDGAERLVGMMREGGLKPNLVTFNSMVNGM 270

Query: 176 ANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARL-YTVAETYVEALEKSMTGNN 234
                +E   KV+ +M R  + P+ VSY  L   +  A   +     + E  +K +  + 
Sbjct: 271 CKAGKMEDARKVFDEMVREGLAPDGVSYNTLVGGYCKAGCSHEALSVFAEMTQKGIMPDV 330

Query: 235 WSTLDVLIILYGYLAKGKDLERIWATVQELP----NVRSKSYVLAIEAFGRIAQVSRAEE 290
            +   ++ +    + K  +LER    V+++      +   ++   I+ F +   +   ++
Sbjct: 331 VTFTSLIHV----MCKAGNLERAVTLVRQMRERGLQMNEVTFTALIDGFCKKGFL---DD 383

Query: 291 LWLEMQSVKQLK---ATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLAL 347
             L ++ +KQ +   +   YN++I+ YC  G +D+A  LL EM   G KP+ +TY  + +
Sbjct: 384 ALLAVRGMKQCRIKPSVVCYNALINGYCMVGRMDEARELLHEMEAKGLKPDVVTYSTI-I 442

Query: 348 GCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEEL 407
             +  N   +   A EL  +++     +   P   T  S+I +   +  + +A  LF+ +
Sbjct: 443 SAYCKNC--DTHSAFELNQQMLE----KGVLPDAITYSSLIRVLCGEKRLSDAHVLFKNM 496

Query: 408 KKANYTKYTFVYNTLIKAYVKAKINDP--NLLRRMILGGARPDAETYSLL 455
            K       F Y +LI  + K    +   +L  +M+  G  PD  TYS+L
Sbjct: 497 IKLGLQPDEFTYTSLIDGHCKEGNVESALSLHDKMVKAGVLPDVVTYSVL 546



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 88/432 (20%), Positives = 175/432 (40%), Gaps = 30/432 (6%)

Query: 47  EVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQGEKLFCCIPKD--YQNELLYNNLVIA 104
           E +  ++RE   +P  + ++ ++    K   +    K+F  + ++    + + YN LV  
Sbjct: 245 ERLVGMMREGGLKPNLVTFNSMVNGMCKAGKMEDARKVFDEMVREGLAPDGVSYNTLVGG 304

Query: 105 CLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPH 164
               G    +L    +M   G     + F  LI +    G  +    ++RQM+   +  +
Sbjct: 305 YCKAGCSHEALSVFAEMTQKGIMPDVVTFTSLIHVMCKAGNLERAVTLVRQMRERGLQMN 364

Query: 165 VSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVE 224
             TF  L+        ++  +     MK+  ++P+ V Y  L   + +      A   + 
Sbjct: 365 EVTFTALIDGFCKKGFLDDALLAVRGMKQCRIKPSVVCYNALINGYCMVGRMDEARELLH 424

Query: 225 ALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQE------LPNVRSKSYVLAIEA 278
            +E      +  T   +I  Y    K  D    +   Q+      LP+  + +Y   I  
Sbjct: 425 EMEAKGLKPDVVTYSTIISAY---CKNCDTHSAFELNQQMLEKGVLPD--AITYSSLIRV 479

Query: 279 FGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPN 338
                ++S A  L+  M  +        Y S+I  +CK G ++ A  L  +M   G  P+
Sbjct: 480 LCGEKRLSDAHVLFKNMIKLGLQPDEFTYTSLIDGHCKEGNVESALSLHDKMVKAGVLPD 539

Query: 339 AITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPW-----------LETTLSI 387
            +TY  L  G  KS       +A +L  KL     + ++T +           L++ L++
Sbjct: 540 VVTYSVLINGLSKS---ARAMEAQQLLFKLYHEDPIPANTKYDALMHCCRKAELKSVLAL 596

Query: 388 IEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAK--INDPNLLRRMILGGA 445
           ++ F  KG +  A+ +++ +   N+     VY+ LI  + +A   +   +  ++M+ GG 
Sbjct: 597 LKGFCMKGLMNEADKVYQSMLDRNWNLDGSVYSVLIHGHCRAGNVMKALSFHKQMLQGGF 656

Query: 446 RPDA-ETYSLLK 456
            P++  T SL++
Sbjct: 657 APNSTSTISLIR 668


>gi|449459510|ref|XP_004147489.1| PREDICTED: pentatricopeptide repeat-containing protein At5g39980,
           chloroplastic-like [Cucumis sativus]
 gi|449530101|ref|XP_004172035.1| PREDICTED: pentatricopeptide repeat-containing protein At5g39980,
           chloroplastic-like [Cucumis sativus]
          Length = 680

 Score = 89.4 bits (220), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 88/394 (22%), Positives = 182/394 (46%), Gaps = 26/394 (6%)

Query: 43  KRALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQGEKLFCCIPKDY--QNELLYNN 100
           +R+L +++W+  E  Y P    Y+ +L   ++         LF  + +     +   Y+ 
Sbjct: 140 QRSLAILDWINEEALYTPSVYAYNVVLRNVLRAKQWELAHGLFDEMRQRALAADRYTYST 199

Query: 101 LVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADK 160
           L+     +G+   +L +++KM     S   ++++ LI L+          +I  ++K   
Sbjct: 200 LITYFGKEGMFDAALSWLQKMEQDRVSGDLVLYSNLIELSRKLCDYSKAISIFSRLKRSG 259

Query: 161 VAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAE 220
           + P +  ++ ++ +            +  +M+  +V P+ VSY  L         +  A 
Sbjct: 260 ITPDIVAYNTMINVFGKAKLFREARFLLKEMRAVDVMPDTVSYSTLLNMFVENEKFLEAL 319

Query: 221 TYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQEL---PNVRSKSYVLAI- 276
           + +  +++     + +T +++I +YG L   K+ +R++  ++++   PNV S + +L + 
Sbjct: 320 SVISEMKEVNCPLDLTTCNIMIDVYGQLDMVKEADRLFWRMRKIGIEPNVVSYNTILRVY 379

Query: 277 ---EAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMN 333
              E FG    + R     ++ + +KQ   T  YN++I +Y K    +KA+ L+++M   
Sbjct: 380 GEAELFGEAIHLFRL----MQRKEIKQNVVT--YNTMIKIYGKTLEHEKATNLVQDMQKR 433

Query: 334 GCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTL--SIIEIF 391
           G +PNAITY         S ++    KA +L    +  +K+RSS   ++  L  ++I  +
Sbjct: 434 GIEPNAITY---------STIISIWGKAGKLDRSAMLFQKLRSSGAEIDQVLYQTMIVAY 484

Query: 392 AEKGDVGNAENLFEELKKANYTKYTFVYNTLIKA 425
            + G VG+A+ L  ELK+ +    T     L KA
Sbjct: 485 EKAGLVGHAKRLLHELKQPDNIPRTTAITILAKA 518


>gi|255565671|ref|XP_002523825.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223536913|gb|EEF38551.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 528

 Score = 89.0 bits (219), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 73/316 (23%), Positives = 141/316 (44%), Gaps = 29/316 (9%)

Query: 152 ILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHA 211
           ++  MKA  V   + TF IL++           +  ++ M+    +P+++++ IL +   
Sbjct: 164 VIDLMKARNVEISIETFSILIRRYVRAGLASEAVHAFNRMEDYNCKPDKIAFSILISILC 223

Query: 212 VARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKG-------KDLERIWATVQE- 263
             R  T A+++ ++L+     +        +I+Y  L +G        + ER++  ++  
Sbjct: 224 RKRRATEAQSFFDSLKDKFEPD--------VIVYTNLVRGWCRAGNIPEAERVFTEMKVA 275

Query: 264 --LPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFID 321
             +PNV +  Y + I+A  R  Q++RA +++ EM  V     +  +N+++ V+ K G  +
Sbjct: 276 GCMPNVYT--YTIVIDALCRCGQITRAHDVFAEMLDVGCEPNSITFNNLLRVHVKAGRTE 333

Query: 322 KASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWL 381
           K   +  +M   GC P+ +TY  L     K   ++E  K L   +K       +  +P  
Sbjct: 334 KVLQVYNQMKRMGCPPDTVTYNFLIESHCKDGNLDEALKVLNSMVK-------KGCSPNA 386

Query: 382 ETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKINDP--NLLRR 439
            T   +    A+  DV  A  L+ ++K+      T  YN L++ +V  K  D    L + 
Sbjct: 387 STFNGLFGSIAKLRDVNGAHRLYAKMKELKCKANTVTYNILMRMFVDTKSTDMVLKLKKE 446

Query: 440 MILGGARPDAETYSLL 455
           M      P+  TY +L
Sbjct: 447 MDEDDVEPNVNTYCVL 462



 Score = 52.8 bits (125), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 60/296 (20%), Positives = 113/296 (38%), Gaps = 53/296 (17%)

Query: 58  YRPKELDYSYLLEFTIKNHGISQGEKLFC------CIPKDYQNELLYNNLVIACLDKGVI 111
           + P  + Y+ L+    +   I + E++F       C+P  Y     Y  ++ A    G I
Sbjct: 242 FEPDVIVYTNLVRGWCRAGNIPEAERVFTEMKVAGCMPNVYT----YTIVIDALCRCGQI 297

Query: 112 KLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHIL 171
             + +   +M  +G   + + FN L+ ++   GR + +  +  QMK     P   T++ L
Sbjct: 298 TRAHDVFAEMLDVGCEPNSITFNNLLRVHVKAGRTEKVLQVYNQMKRMGCPPDTVTYNFL 357

Query: 172 MKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMT 231
           ++    D N++  +KV + M +    PN  ++                            
Sbjct: 358 IESHCKDGNLDEALKVLNSMVKKGCSPNASTF---------------------------N 390

Query: 232 GNNWSTLDVLIILYGYLAKGKDL---ERIWATVQELP-NVRSKSYVLAIEAFGRIAQVSR 287
           G           L+G +AK +D+    R++A ++EL     + +Y + +  F        
Sbjct: 391 G-----------LFGSIAKLRDVNGAHRLYAKMKELKCKANTVTYNILMRMFVDTKSTDM 439

Query: 288 AEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGC-KPNAITY 342
             +L  EM           Y  +I++YC  G  + A    +EM    C KP+   Y
Sbjct: 440 VLKLKKEMDEDDVEPNVNTYCVLIAMYCGMGHWNNAYKFFREMVEEKCLKPSLPVY 495


>gi|242092012|ref|XP_002436496.1| hypothetical protein SORBIDRAFT_10g003720 [Sorghum bicolor]
 gi|241914719|gb|EER87863.1| hypothetical protein SORBIDRAFT_10g003720 [Sorghum bicolor]
          Length = 698

 Score = 89.0 bits (219), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 91/407 (22%), Positives = 173/407 (42%), Gaps = 21/407 (5%)

Query: 58  YRPKELDYSYLLEFTIKNHGISQGEKLFCCIPKD--YQNELLYNNLVIACLDKGVIKLSL 115
           Y P  L Y+ +L   + +  +    + F  +  D    N   YN LV A   +G  K +L
Sbjct: 119 YAPSVLAYNAVL-LALSDASLPSARRFFDSMLSDGVAPNVYTYNILVRALCGRGHRKEAL 177

Query: 116 EYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIE 175
             ++ MR  G   + + +N L+      G       ++  M+   + P++ TF+ ++   
Sbjct: 178 SVLRDMRGAGCDPNAVTYNTLVAAFCRAGEVDRAERLVDMMREGGLKPNLVTFNSVVNGI 237

Query: 176 ANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHA-VARLYTVAETYVEALEKSMTGNN 234
                +E   KV+ +M +  + P+ VSY  L   +  V   +     + E   K +  + 
Sbjct: 238 CKAGRMEDARKVFDEMVKEGLAPDGVSYNTLVGGYCKVGCSHEALSVFAEMTRKGIMPDV 297

Query: 235 WSTLDVLIILYGYLAKGKDLERIWATVQELP----NVRSKSYVLAIEAFGRIAQVSRAEE 290
            +   ++ +    + K  +LER    V+E+      +   ++   I+ F +   +  A  
Sbjct: 298 VTFTSLIHV----MCKAGNLERAVGLVREMRERGLQMNEITFTALIDGFCKKGFLDDALL 353

Query: 291 LWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCF 350
              EM+  +   +   YN++I+ YC  G +D+A  L++EM   G KP+ +TY  + L  +
Sbjct: 354 AVREMRQCRIQPSVVCYNALINGYCMVGRMDEARELVREMEAKGVKPDVVTYSTI-LSAY 412

Query: 351 KSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKA 410
             N   +   A +L  +++    +    P   T  S+I +  E+  +G+A  LF+ +   
Sbjct: 413 CKN--GDTHSAFQLNQQMLENGVL----PDAITYSSLIRVLCEEKRLGDAHVLFKNMISL 466

Query: 411 NYTKYTFVYNTLIKAYVKAKINDP--NLLRRMILGGARPDAETYSLL 455
                   Y +LI  + K    +   +L   M+  G  PD  TYS+L
Sbjct: 467 GLQPDEVTYTSLIDGHCKEGNVERALSLHDEMVKAGVLPDVVTYSVL 513



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 80/393 (20%), Positives = 154/393 (39%), Gaps = 21/393 (5%)

Query: 52  VIRERPYRPKELDYSYLLEFTIKNHGISQGEKLFCCIPKD--YQNELLYNNLVIACLDKG 109
           ++RE   +P  + ++ ++    K   +    K+F  + K+    + + YN LV      G
Sbjct: 217 MMREGGLKPNLVTFNSVVNGICKAGRMEDARKVFDEMVKEGLAPDGVSYNTLVGGYCKVG 276

Query: 110 VIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFH 169
               +L    +M   G     + F  LI +    G  +    ++R+M+   +  +  TF 
Sbjct: 277 CSHEALSVFAEMTRKGIMPDVVTFTSLIHVMCKAGNLERAVGLVREMRERGLQMNEITFT 336

Query: 170 ILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKS 229
            L+        ++  +    +M++  ++P+ V Y  L   + +      A   V  +E  
Sbjct: 337 ALIDGFCKKGFLDDALLAVREMRQCRIQPSVVCYNALINGYCMVGRMDEARELVREMEAK 396

Query: 230 MTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPN---VRSKSYVLAIEAFGRIAQVS 286
             G     +    IL  Y   G          Q L N     + +Y   I       ++ 
Sbjct: 397 --GVKPDVVTYSTILSAYCKNGDTHSAFQLNQQMLENGVLPDAITYSSLIRVLCEEKRLG 454

Query: 287 RAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLA 346
            A  L+  M S+        Y S+I  +CK G +++A  L  EM   G  P+ +TY  L 
Sbjct: 455 DAHVLFKNMISLGLQPDEVTYTSLIDGHCKEGNVERALSLHDEMVKAGVLPDVVTYSVLI 514

Query: 347 LGCFKSNLVEEGFKALELGMKLITTKKVRSSTPW-----------LETTLSIIEIFAEKG 395
            G  KS   +E  + L    KL   + V ++  +           L++ L++++ F  KG
Sbjct: 515 NGLSKSARTKEAQRLL---FKLYHEEPVPANIKYDALMRCCRNAELKSVLALLKGFCMKG 571

Query: 396 DVGNAENLFEELKKANYTKYTFVYNTLIKAYVK 428
            +  A+ +++ +   N+     VY+ LI  + +
Sbjct: 572 LMNEADKVYQSILDRNWNLDGSVYSVLIHGHCR 604



 Score = 47.8 bits (112), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 76/335 (22%), Positives = 144/335 (42%), Gaps = 33/335 (9%)

Query: 94  NELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNIL 153
           NE+ +  L+     KG +  +L  +++MR      S + +N LI      GR      ++
Sbjct: 331 NEITFTALIDGFCKKGFLDDALLAVREMRQCRIQPSVVCYNALINGYCMVGRMDEARELV 390

Query: 154 RQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVA 213
           R+M+A  V P V T+  ++     + +     ++   M  + V P+ ++Y  L     + 
Sbjct: 391 REMEAKGVKPDVVTYSTILSAYCKNGDTHSAFQLNQQMLENGVLPDAITYSSLI--RVLC 448

Query: 214 RLYTVAETYVEALEKSMT--GNNWSTLDVLIILYGYLAKGKDLERIWATVQE------LP 265
               + + +V  L K+M   G     +    ++ G+  +G ++ER  +   E      LP
Sbjct: 449 EEKRLGDAHV--LFKNMISLGLQPDEVTYTSLIDGHCKEG-NVERALSLHDEMVKAGVLP 505

Query: 266 NVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASG 325
           +V   +Y + I    + A+   A+ L  ++   + + A  +Y++++   C+N  +     
Sbjct: 506 DV--VTYSVLINGLSKSARTKEAQRLLFKLYHEEPVPANIKYDALMRC-CRNAELKSVLA 562

Query: 326 LLKEMSMNGCKPNA------ITYRHLAL-GCFKSNLVE----EG--FKALELGMKLITTK 372
           LLK   M G    A      I  R+  L G   S L+     EG   KAL    +++   
Sbjct: 563 LLKGFCMKGLMNEADKVYQSILDRNWNLDGSVYSVLIHGHCREGNVMKALSFHKQMLQCG 622

Query: 373 KVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEEL 407
              +ST    +T+S+I    EKG V  A+ + ++L
Sbjct: 623 FAPNST----STISLIRGLFEKGMVVEADQVIQQL 653


>gi|296083392|emb|CBI23347.3| unnamed protein product [Vitis vinifera]
          Length = 451

 Score = 89.0 bits (219), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 86/351 (24%), Positives = 157/351 (44%), Gaps = 16/351 (4%)

Query: 105 CLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPH 164
           CL+ G ++ +L    KM   G     L  N L+      G  +   N++R+M     +P+
Sbjct: 35  CLE-GKLRAALWLRNKMIQKGVIPDVLTHNYLVNGLCKAGDLEKADNLVREMLEIGPSPN 93

Query: 165 VSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVE 224
            +TF+  +K    ++N++  + ++S M  S + PN+V+Y IL  A     L   A   +E
Sbjct: 94  CATFNTFIKGYCLNNNVDKALYLFSTMANSGIGPNKVTYNILIHALCKKGLLKDARKLLE 153

Query: 225 ALEKSMTGNNWS-TLDVLIILYGYLAKGKDLERI--WA-TVQELPNVRSKSYVLAIEAFG 280
            +     G   S  +   I + G L KG  ++ +  W   +Q    +   +Y + I  F 
Sbjct: 154 KILDDDCGKETSDIITSTIFMDGCLKKGDMVQALVHWDEMLQRGTQIDVVAYNVLIHGFC 213

Query: 281 RIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAI 340
            I  ++ A   + EM     L     YN++IS +CK G +D+A  +   MS  G  P+ I
Sbjct: 214 LIQDMNSAYRYFCEMFKRGLLPDIFTYNTLISGFCKIGNLDEACYIHGVMSKMGAAPDLI 273

Query: 341 TYRHLALG-CFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGN 399
           +Y+ +  G C   +++    +A +  + ++    V     W      +I+     GD+ N
Sbjct: 274 SYKMIIQGLCIHGDVI----RANQFLVCMLENLMVPEPLIW----NVVIDGHGRHGDLSN 325

Query: 400 AENLFEELKKANYTKYTFVYNTLIKAYVKAK--INDPNLLRRMILGGARPD 448
           A ++ +++         F YN LI A +K    ++  ++ + M+L G  PD
Sbjct: 326 ALSIRDQMVSFGIPPNVFTYNALIHAQIKGGNIVDAHSIKKEMLLNGIYPD 376



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 50/196 (25%), Positives = 88/196 (44%), Gaps = 12/196 (6%)

Query: 264 LPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKA 323
           +P+V + +Y+  +    +   + +A+ L  EM  +        +N+ I  YC N  +DKA
Sbjct: 56  IPDVLTHNYL--VNGLCKAGDLEKADNLVREMLEIGPSPNCATFNTFIKGYCLNNNVDKA 113

Query: 324 SGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLET 383
             L   M+ +G  PN +TY  L     K  L+++  K LE   K++     + ++  + +
Sbjct: 114 LYLFSTMANSGIGPNKVTYNILIHALCKKGLLKDARKLLE---KILDDDCGKETSDIITS 170

Query: 384 TLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKINDPNLLRR---- 439
           T+  ++   +KGD+  A   ++E+ +         YN LI  +    I D N   R    
Sbjct: 171 TI-FMDGCLKKGDMVQALVHWDEMLQRGTQIDVVAYNVLIHGF--CLIQDMNSAYRYFCE 227

Query: 440 MILGGARPDAETYSLL 455
           M   G  PD  TY+ L
Sbjct: 228 MFKRGLLPDIFTYNTL 243


>gi|302798617|ref|XP_002981068.1| hypothetical protein SELMODRAFT_420699 [Selaginella moellendorffii]
 gi|300151122|gb|EFJ17769.1| hypothetical protein SELMODRAFT_420699 [Selaginella moellendorffii]
          Length = 537

 Score = 89.0 bits (219), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 109/443 (24%), Positives = 197/443 (44%), Gaps = 68/443 (15%)

Query: 29  IFHSINRLRKLQLNKRALEVMEWVIRERPYRPKELDYS-YLLEFTI--KNHGISQGEKLF 85
           I + + +LR  + +K+AL +++W+  E+P+   E D S Y L  +I  + + + + EK+F
Sbjct: 139 ILYVVGKLRTFRRSKQALSILDWLAEEKPF--GEFDESLYKLHISIAFEVNSVHKAEKIF 196

Query: 86  CCIPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMR--VLGHSISYL-VFNRLIILNSS 142
             +PK    EL     ++  +  G    S   M K+   +L  ++S +  +  LI L   
Sbjct: 197 ESVPK----ELQLQEKLLGAMAAGYA--SAHRMDKVEEILLQCNLSAMEPYTALIKLYFR 250

Query: 143 PGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVS 202
                   ++ +++KA K+ P ++ F  L++      ++E L       K  E+E +   
Sbjct: 251 VALYDKAASLYKRIKAAKLEPDLAAFAALLR---EKSSLESL-------KPRELEEDA-- 298

Query: 203 YCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQ 262
                          VA  +  A E+ +T         +++  GYL K   + ++W  ++
Sbjct: 299 --------------EVALHHAGAYEEELTIKAPVASQAMVV-SGYLGKAAQVSKLWKHIK 343

Query: 263 E-----LPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKN 317
           +     +P V    Y+ AIEAFG   +V  AE++  EM+  K  K  E   ++I VY +N
Sbjct: 344 QEKSSSIPAV---CYLNAIEAFGAAGKVRSAEKVADEMEMAKS-KYVELSAAMIRVYSRN 399

Query: 318 GFIDKASGLLKEMSMNGC----KPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKK 373
              DKA  ++ ++  NG     +P+A     L  G   SN  ++  KAL++ +       
Sbjct: 400 QMADKAEAVIDDLRANGVWNLFRPHA----ELITGYLDSNQPDQAMKALKVAL------L 449

Query: 374 VRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKIND 433
           V+   P     L ++ +F    D   AE++    K A   +   +Y  L++ YV AK+  
Sbjct: 450 VKLMKPTYAVILKMLPVFERLRDAEGAEDMVMRYKGATDLR---MYKGLLRIYVSAKVKP 506

Query: 434 -PNLLRRMILGGARPDAETYSLL 455
              +  R++L     D ET  LL
Sbjct: 507 LEEIEARLMLKKIPLDEETRELL 529


>gi|224069551|ref|XP_002326371.1| predicted protein [Populus trichocarpa]
 gi|222833564|gb|EEE72041.1| predicted protein [Populus trichocarpa]
          Length = 726

 Score = 89.0 bits (219), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 99/437 (22%), Positives = 186/437 (42%), Gaps = 49/437 (11%)

Query: 60  PKELDYSYLLEFTIKNHGISQGEKLFCCIPKD--YQNELLYNNLVIACLDKGVIKLSLEY 117
           P    Y+ L+    +N+ ++   K+F  +P     +NE+ Y  ++    + G I   +  
Sbjct: 247 PDSFTYTSLILGYCRNNDVNSAYKVFNMMPNKGCRRNEVSYTTIIHGLCEAGRIDEGISL 306

Query: 118 MKKMR------------VLGHSI--------SYLVFNRL-------------IILNSSPG 144
            KKMR            V+ H++           +FN +             +++++   
Sbjct: 307 FKKMREDDCYPTVRTYTVIIHALFGNDRNLEGMDLFNEMRERSCEPNVHTYTVMVDAMCK 366

Query: 145 RRKTIPN--ILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVS 202
            RK   +  IL +M    + P V T++ L++    +  IE  +++   M+ +   PNE +
Sbjct: 367 ERKLDESRRILNEMMEKGLVPSVVTYNALIRGYCEEGRIEAALEILGLMESNNCRPNERT 426

Query: 203 YCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQ 262
           Y  L    +  +    A T +  + +S    +  T + LI +           ++   ++
Sbjct: 427 YNELICGFSKRKHVHKAMTLLSKMLESKLTPSLVTYNSLIHVQCKAGHFDSAYKLLDLLK 486

Query: 263 ELPNVRSK-SYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATE-QYNSVISVYCKNGFI 320
           E   V  + +Y + I+   +  ++  A +L+  ++  K +KA E  Y ++I  +CK G I
Sbjct: 487 ENGLVPDQWTYSVFIDTLCKSKRMEEACDLFNSLKE-KGIKANEVMYTALIDGHCKAGKI 545

Query: 321 DKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPW 380
           D+A  LL+ M    C PN+ TY  L  G  K   V+EG   +E  M  +  K      P 
Sbjct: 546 DEAISLLERMHSEDCLPNSSTYNSLIYGVCKEGKVQEGLSMVE-NMSKMGVK------PT 598

Query: 381 LETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKA-KINDP-NLLR 438
           + T   +IE    +GD  +A  +F ++    +    + Y   I  Y  +  + +   ++ 
Sbjct: 599 VATYTILIEEMLREGDFDHANRVFNQMVSFGHKPDVYTYTAFIHTYCTSGNVKEAEGMMA 658

Query: 439 RMILGGARPDAETYSLL 455
           RMI  G  PD+ TY+LL
Sbjct: 659 RMIEAGVMPDSLTYTLL 675



 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 62/274 (22%), Positives = 114/274 (41%), Gaps = 7/274 (2%)

Query: 94  NELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNIL 153
           NE  YN L+     +  +  ++  + KM     + S + +N LI +    G   +   +L
Sbjct: 423 NERTYNELICGFSKRKHVHKAMTLLSKMLESKLTPSLVTYNSLIHVQCKAGHFDSAYKLL 482

Query: 154 RQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVA 213
             +K + + P   T+ + +        +E    +++ +K   ++ NEV Y  L   H  A
Sbjct: 483 DLLKENGLVPDQWTYSVFIDTLCKSKRMEEACDLFNSLKEKGIKANEVMYTALIDGHCKA 542

Query: 214 RLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSK--- 270
                A + +E +       N ST + LI  YG   +GK  E + + V+ +  +  K   
Sbjct: 543 GKIDEAISLLERMHSEDCLPNSSTYNSLI--YGVCKEGKVQEGL-SMVENMSKMGVKPTV 599

Query: 271 -SYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKE 329
            +Y + IE   R      A  ++ +M S         Y + I  YC +G + +A G++  
Sbjct: 600 ATYTILIEEMLREGDFDHANRVFNQMVSFGHKPDVYTYTAFIHTYCTSGNVKEAEGMMAR 659

Query: 330 MSMNGCKPNAITYRHLALGCFKSNLVEEGFKALE 363
           M   G  P+++TY  L     +  L  + F  L+
Sbjct: 660 MIEAGVMPDSLTYTLLISAYERLGLAYDAFNVLK 693



 Score = 51.6 bits (122), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 65/311 (20%), Positives = 120/311 (38%), Gaps = 47/311 (15%)

Query: 151 NILRQMKAD----KVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCIL 206
           + LRQM  D    K    V +++ L+ + A    I+ + +VY++M    + PN  +   +
Sbjct: 161 DFLRQMNRDDNDIKFKLSVRSYNELLMMLARFLMIDEMKRVYTEMLNDMIVPNIYTLNTM 220

Query: 207 ATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPN 266
             A++       A  YV  + ++    +  T   LI+ Y    +  D+   +     +PN
Sbjct: 221 VNAYSKMGNIVEANLYVSKIFQAGLSPDSFTYTSLILGY---CRNNDVNSAYKVFNMMPN 277

Query: 267 VRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGL 326
                            +  R  E+               Y ++I   C+ G ID+   L
Sbjct: 278 -----------------KGCRRNEV--------------SYTTIIHGLCEAGRIDEGISL 306

Query: 327 LKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLS 386
            K+M  + C P   TY  +    F ++      + LE GM L    + RS  P + T   
Sbjct: 307 FKKMREDDCYPTVRTYTVIIHALFGND------RNLE-GMDLFNEMRERSCEPNVHTYTV 359

Query: 387 IIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYV-KAKINDP-NLLRRMILGG 444
           +++   ++  +  +  +  E+ +         YN LI+ Y  + +I     +L  M    
Sbjct: 360 MVDAMCKERKLDESRRILNEMMEKGLVPSVVTYNALIRGYCEEGRIEAALEILGLMESNN 419

Query: 445 ARPDAETYSLL 455
            RP+  TY+ L
Sbjct: 420 CRPNERTYNEL 430


>gi|449523946|ref|XP_004168984.1| PREDICTED: pentatricopeptide repeat-containing protein At2g20710,
           mitochondrial-like [Cucumis sativus]
          Length = 461

 Score = 88.6 bits (218), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 89/382 (23%), Positives = 172/382 (45%), Gaps = 23/382 (6%)

Query: 5   PRGEP---VGSAFQSWMREGFPVHRGEIFHSINRLRKLQLNKRALEVMEWVIRERPYRPK 61
           P G+P   V      W+ EG  V + E+ H I  LR  +  K ALE+ +W+  +R +   
Sbjct: 37  PVGDPNISVTPLLDQWVLEGRLVQQDELRHIIKELRVYKRFKHALEISKWMSDKRYFPLS 96

Query: 62  ELDYSYLLEFTIKNHGISQGEKLFCCIP---KDYQNELLYNNLVI--ACLDKGVIKLSLE 116
             D +  +   ++ HG+ Q E  F  +P   K YQ  +   N      C+DK        
Sbjct: 97  TADIAIRMNLILRVHGLEQVEDYFDNMPSQLKRYQVHIALLNCYAHEKCVDKAN-----A 151

Query: 117 YMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEA 176
           +M+K++ +G + S L +N ++ L    G  + + ++L++MK   V     T+ I +   A
Sbjct: 152 FMQKIKEMGFANSPLPYNIMMNLYHQIGEFERLDSLLKEMKERGVYYDRFTYSIRISAYA 211

Query: 177 NDHNIEGLMKVYSDMKRSEVEPNEV----SYCILATAHAVARLYTVAETYVEALEKSMTG 232
              +  G+ K+   M++ E  P+ V     Y I A A+    L   + + ++  E  +  
Sbjct: 212 AASDFRGIEKI---MEQMESNPSIVLDWNCYVIAANAYNKVGLIDKSISMLKKSEGLLAN 268

Query: 233 --NNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEE 290
                   +V + LY    K  ++ RIW   ++   + +K ++  I +   +  +  AE 
Sbjct: 269 VKKKGFAFNVYLKLYARNGKKDEIHRIWNLYKK-EKIFNKGFISMITSLLILDDIKGAER 327

Query: 291 LWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCF 350
           ++ E ++ K        N ++  YC+ G ++KA  LL EM +   K +  ++ +LA G  
Sbjct: 328 IYKEWETRKLSYDLRIPNLLVDAYCRAGLMEKAEVLLNEMVIVRRKFSVESWCYLASGYL 387

Query: 351 KSNLVEEGFKALELGMKLITTK 372
           + + + +  + L+L   +  ++
Sbjct: 388 QKDQLPQAVETLKLAASVCPSR 409


>gi|302801572|ref|XP_002982542.1| hypothetical protein SELMODRAFT_421995 [Selaginella moellendorffii]
 gi|300149641|gb|EFJ16295.1| hypothetical protein SELMODRAFT_421995 [Selaginella moellendorffii]
          Length = 537

 Score = 88.6 bits (218), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 107/440 (24%), Positives = 197/440 (44%), Gaps = 62/440 (14%)

Query: 29  IFHSINRLRKLQLNKRALEVMEWVIRERPYRPKELDYS-YLLEFTI--KNHGISQGEKLF 85
           I + + +LR  + +K+AL +++W+  E+P+   E D S Y L  +I  + + + + EK+F
Sbjct: 139 ILYVVGKLRTFRRSKQALSILDWLAEEKPF--GEFDESLYKLHISIAFEVNSVHKAEKIF 196

Query: 86  CCIPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMR--VLGHSISYL-VFNRLIILNSS 142
             +PK    EL     ++  +  G    S   M K+   +L  ++S +  +  LI L   
Sbjct: 197 ESVPK----ELQLQEKLLGAMAAGYA--SAHRMDKVEEILLQCNLSAMEPYTALIKLYFR 250

Query: 143 PGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVS 202
                   ++ +++KA K+ P ++ F  L++      ++E L       K  E+E +   
Sbjct: 251 VALYDKAASLYKRIKAAKLEPDLAAFAALLR---EKSSLESL-------KPRELEEDA-- 298

Query: 203 YCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQ 262
                          VA  +  A E+ +T         +++  GYL K   + ++W  ++
Sbjct: 299 --------------EVALHHAGAYEEELTIKAPVASQAMVV-SGYLGKAAQVTKLWKRIK 343

Query: 263 E--LPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFI 320
           +    ++ +  Y+ AIEAFG   +V  AE++  EM+  K  K  E   ++I VY +N   
Sbjct: 344 QEKSSSIPAVCYLNAIEAFGAAGKVRSAEKVADEMEMAKS-KYVELSAAMICVYSRNQMA 402

Query: 321 DKASGLLKEMSMNGC----KPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRS 376
           DKA  ++ ++  NG     +P+A     L  G   SN  ++  KAL++ +       V+ 
Sbjct: 403 DKAEAVIDDLRANGVWNLFRPHA----ELITGYLDSNQPDQAMKALKVAL------LVKL 452

Query: 377 STPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKIND-PN 435
             P     L ++ +F    D   AE++    K A   +   +Y  L++ YV AK+     
Sbjct: 453 MKPTYAVILKMLPVFERLRDAEGAEDMVMRYKGATDLR---MYKGLLRIYVSAKVKPLEE 509

Query: 436 LLRRMILGGARPDAETYSLL 455
           +  R++L     D ET  LL
Sbjct: 510 IEARLMLKKIPLDDETRELL 529


>gi|302764530|ref|XP_002965686.1| hypothetical protein SELMODRAFT_407278 [Selaginella moellendorffii]
 gi|300166500|gb|EFJ33106.1| hypothetical protein SELMODRAFT_407278 [Selaginella moellendorffii]
          Length = 1015

 Score = 88.6 bits (218), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 96/452 (21%), Positives = 191/452 (42%), Gaps = 56/452 (12%)

Query: 13  AFQSWMREGFPVHRGEIFHSINRLRKLQLNKRALEVMEWVIRERPYRPKELDYSYLLEFT 72
           A + WMR G  +    +      L K +     ++++E +  ER  +  ++   + +   
Sbjct: 89  AVKKWMRRGNCLSSDVLSTIYFWLMKRKRYTEIMKLLEGIRCERLVKFTDMHCVWAIGVI 148

Query: 73  IKNHGISQGEKLFCCIPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLV 132
            +  G+++ E+ +  +P+  + + +   L ++   +  +  + ++++K++V  H+   L 
Sbjct: 149 SRRRGMAKAERFYDSLPEKLRTDRVTVGLFLSVAKENGLAKAEQWLEKIQV--HTTDILD 206

Query: 133 FNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMK 192
              ++ LN    +   +  +  +M+   + P V T+ +L+K    D    GL        
Sbjct: 207 VMMVLYLNRD--KHHKVVEMFERMRGLGLQPSVRTYLMLLK--CKDRGAGGL-------- 254

Query: 193 RSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGK 252
                       I   A    +   V ++ V  L  +M             +YGY+ K  
Sbjct: 255 ----------NAIEGEALGAVQTIDVEDSPVRTLNDAME------------VYGYVGKQH 292

Query: 253 DLERIWATVQEL-PNVRSKSYVLAIEAFGRIAQVSRAEELWLEM-QSVKQLKATEQ--YN 308
            +E +W +++    ++   SY  AI A G + +V++A  L  E+     +    EQ  + 
Sbjct: 293 GIEELWRSLKRTRSDIHQSSYFSAITALGLVGEVAKARALCKELLAGSDEFTKFEQNPHA 352

Query: 309 SVISVYCKNGFIDKASGLL--KEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGM 366
            ++ VY +NG ++KA  +L  KE+  +   P    Y  L  G   +N + E  K L+ G+
Sbjct: 353 LMLEVYARNGMMEKAERILQSKELDRDSFAP----YNSLIQGYMAANNISEALKKLDDGL 408

Query: 367 KLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKY--TFVYNTLIK 424
             +  K +R      +T + ++ ++A  GDV  A+ L        YTK     VYN  +K
Sbjct: 409 AAVPAKSIRLQ---YKTMMVLLPVYAANGDVEGAKELMR-----RYTKLGDAGVYNEFLK 460

Query: 425 AYVKAKINDPNLLRRMILGGARPDAETYSLLK 456
            Y+  K +    + RM   G   + ET  LL+
Sbjct: 461 VYISRKRHPREFMERMQANGVEGNRETEKLLE 492



 Score = 83.2 bits (204), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 101/454 (22%), Positives = 187/454 (41%), Gaps = 58/454 (12%)

Query: 13  AFQSWMREGFPVHRGEIFHSINRLRKLQLNKRALEVMEWVIRERPYRPKELDYSYLLEFT 72
             + W+REG       +     RL K +  K  L+++  +  E   +  +  Y + +  T
Sbjct: 584 GLKEWVREGNTFSSSLLSKVYYRLAKRKCYKEILQLLRGIREENMVQTTQTHYIWEMAIT 643

Query: 73  IKNHGISQGEKLFC-CIPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYL 131
            +       E  +   IP  +++E +   L+ +   +  +  S +++++M VL   +   
Sbjct: 644 CRQQSTYAAEIFYNDIIPARFRSEEVTAALIFSLAKRNALAKSEKWIEQMTVLSTDL--- 700

Query: 132 VFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDM 191
             N L+ L             L + K DKV                       ++ Y  M
Sbjct: 701 -LNMLMAL------------YLDRDKHDKV-----------------------LETYERM 724

Query: 192 KRSEVEPNEVSYCILAT--AHAVARLYTVAETYVEALEK-SMTGNNWSTLDVLIILYGYL 248
            +  +EP+  +Y +L T    A   L  +     EA++K  +      TL   + + GYL
Sbjct: 725 SKLGLEPSINTYLMLLTYKDKAGGGLEGIEREAEEAVKKIDLDAALRKTLQETMEVCGYL 784

Query: 249 AKGKDLERIWATVQELPNVRS---KSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATE 305
            K   +E IW+ ++ L   ++    SY+ A+ AFGR+  V RAE+++ E+ +    K+  
Sbjct: 785 GKAASVEDIWSRLKSLSGTQACDQSSYLSAMAAFGRVKNVERAEQVFEELLTQDLSKSLA 844

Query: 306 QYNSV-ISVYCKNGFIDKASGLLKE-MSMNGCKPNAITYRHLALGCFKSNLVEEGFKALE 363
             ++V + VY  NG + KA  +L+  ++     P    Y  L  G   S   E     L+
Sbjct: 845 NPHAVMVEVYVSNGLMAKAEHVLRHRLNEAVFSP----YNSLVRGYIASGDTELALARLK 900

Query: 364 LGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLI 423
            G+  I  + +R   P  +T ++++ +FA + D+  AE +    +   +     VYN L+
Sbjct: 901 EGVAAIPARHIR---PAYKTMMALLPVFAARRDIDGAERIMFHYR---FIGDATVYNELL 954

Query: 424 KAYVKAKINDPNLLRRMILGGARPDAETYSLLKL 457
           K YV   +   +   RM       D  T  L ++
Sbjct: 955 KVYVACNVFPLDFRNRMKGSDVEGDETTEELFEM 988


>gi|302780401|ref|XP_002971975.1| hypothetical protein SELMODRAFT_96626 [Selaginella moellendorffii]
 gi|300160274|gb|EFJ26892.1| hypothetical protein SELMODRAFT_96626 [Selaginella moellendorffii]
          Length = 755

 Score = 88.6 bits (218), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 89/414 (21%), Positives = 164/414 (39%), Gaps = 24/414 (5%)

Query: 53  IRERPYRPKELDYSYLLEFTIKNHGISQGEKLF------CCIPKDYQNELLYNNLVIACL 106
           ++E    P  + YS ++    +   +    KLF       C+P    N + YN L+    
Sbjct: 187 MKESGLAPNVVTYSTVIHGFCRQTKVDTAYKLFRQMVENGCMP----NLVTYNTLLSGLC 242

Query: 107 DKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVS 166
             G++  + E + +MR  G       ++ L+      G+      +          P V 
Sbjct: 243 RNGLMDEAYELLDEMRERGLQPDKFSYDTLMAGLCKTGKIDMALKVFEDNSNGDCPPDVV 302

Query: 167 TFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEAL 226
            +  L+        ++   K++  M+ +  EP+ V++  L            A+  +E +
Sbjct: 303 AYSTLIAGLCKAGRLDEACKLFEKMRENSCEPDVVTFTALMDGLCKGDRLQEAQQVLETM 362

Query: 227 EKSMTGNNWSTLDVLIILYGYLAKGKDLERIWA--TVQEL-PNVRSKSYVLAIEAFGRIA 283
           E      N  T   LI       + +D + ++    V+ + PNV   +Y   I  F    
Sbjct: 363 EDRNCTPNVITYSSLIDGLCKTGQVRDAQEVFKRMIVRGIEPNV--VTYNSLIHGFCMTN 420

Query: 284 QVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYR 343
            V  A  L  EM +   L     YN++I   CK G   +A+ L  +M    C P+ ITY 
Sbjct: 421 GVDSALLLMEEMTATGCLPDIITYNTLIDGLCKTGRAPEANRLFGDMKAKFCNPDVITYS 480

Query: 344 HLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENL 403
            L  G  K        + +++   L      ++  P + T  +++E +   G V +AE L
Sbjct: 481 CLIGGFCK-------LERIDMARTLFDDMLKQAVLPDVVTFSTLVEGYCNAGLVDDAERL 533

Query: 404 FEELKKANYTKYTFVYNTLIKAYVKAK--INDPNLLRRMILGGARPDAETYSLL 455
            EE+  ++ +   + Y +L+  + K    +    +L+RM   G +P+  TY+ L
Sbjct: 534 LEEMVASDCSPDVYTYTSLVDGFCKVGRMVEARRVLKRMAKRGCQPNVVTYTAL 587



 Score = 82.8 bits (203), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 81/382 (21%), Positives = 146/382 (38%), Gaps = 18/382 (4%)

Query: 53  IRERPYRPKELDYSYLLEFTIKNHGISQGEKLFCCIPKDYQNE------LLYNNLVIACL 106
           +RER  +P +  Y  L+    K   I    K+F    +D  N       + Y+ L+    
Sbjct: 257 MRERGLQPDKFSYDTLMAGLCKTGKIDMALKVF----EDNSNGDCPPDVVAYSTLIAGLC 312

Query: 107 DKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVS 166
             G +  + +  +KMR        + F  L+       R +    +L  M+     P+V 
Sbjct: 313 KAGRLDEACKLFEKMRENSCEPDVVTFTALMDGLCKGDRLQEAQQVLETMEDRNCTPNVI 372

Query: 167 TFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEAL 226
           T+  L+        +    +V+  M    +EPN V+Y  L     +      A   +E +
Sbjct: 373 TYSSLIDGLCKTGQVRDAQEVFKRMIVRGIEPNVVTYNSLIHGFCMTNGVDSALLLMEEM 432

Query: 227 EKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQ-ELPNVRSKSYVLAIEAFGRIAQV 285
             +    +  T + LI       +  +  R++  ++ +  N    +Y   I  F ++ ++
Sbjct: 433 TATGCLPDIITYNTLIDGLCKTGRAPEANRLFGDMKAKFCNPDVITYSCLIGGFCKLERI 492

Query: 286 SRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHL 345
             A  L+ +M     L     +++++  YC  G +D A  LL+EM  + C P+  TY  L
Sbjct: 493 DMARTLFDDMLKQAVLPDVVTFSTLVEGYCNAGLVDDAERLLEEMVASDCSPDVYTYTSL 552

Query: 346 ALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFE 405
             G  K   + E  + L+   K       R   P + T  ++I+ F   G    A  L E
Sbjct: 553 VDGFCKVGRMVEARRVLKRMAK-------RGCQPNVVTYTALIDAFCRAGKPTVAYRLLE 605

Query: 406 ELKKANYTKYTFVYNTLIKAYV 427
           E+           Y +LI  + 
Sbjct: 606 EMVGNGVQPNVITYRSLIGGFC 627



 Score = 79.3 bits (194), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 98/421 (23%), Positives = 168/421 (39%), Gaps = 51/421 (12%)

Query: 38  KLQLNKRALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQGEKLF--CCIPKDYQNE 95
           +LQ  ++ LE ME    +R   P  + YS L++   K   +   +++F    +     N 
Sbjct: 351 RLQEAQQVLETME----DRNCTPNVITYSSLIDGLCKTGQVRDAQEVFKRMIVRGIEPNV 406

Query: 96  LLYNNLVIA-CLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILR 154
           + YN+L+   C+  GV   +L  M++M   G     + +N LI      GR      +  
Sbjct: 407 VTYNSLIHGFCMTNGVDS-ALLLMEEMTATGCLPDIITYNTLIDGLCKTGRAPEANRLFG 465

Query: 155 QMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVAR 214
            MKA    P V T+  L+        I+    ++ DM +  V P+ V++  L   +  A 
Sbjct: 466 DMKAKFCNPDVITYSCLIGGFCKLERIDMARTLFDDMLKQAVLPDVVTFSTLVEGYCNAG 525

Query: 215 LYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSKSYVL 274
           L   AE  +E     M  ++ S                            P+V +  Y  
Sbjct: 526 LVDDAERLLE----EMVASDCS----------------------------PDVYT--YTS 551

Query: 275 AIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNG 334
            ++ F ++ ++  A  +   M           Y ++I  +C+ G    A  LL+EM  NG
Sbjct: 552 LVDGFCKVGRMVEARRVLKRMAKRGCQPNVVTYTALIDAFCRAGKPTVAYRLLEEMVGNG 611

Query: 335 CKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEK 394
            +PN ITYR L  G   +  +EE  K LE   +L   +  ++    +     +++     
Sbjct: 612 VQPNVITYRSLIGGFCGTGDLEEARKILE---RLERDENCKAD---MFAYRVMMDGLCRT 665

Query: 395 GDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAK--INDPNLLRRMILG-GARPDAET 451
           G +  A  L E +K++       +Y  LI+   + K       +L  M L   +RP+AE 
Sbjct: 666 GRMSAALELLEAIKQSGTPPRHDIYVALIRGLCQGKELGKAMEVLEEMTLSRKSRPNAEA 725

Query: 452 Y 452
           Y
Sbjct: 726 Y 726



 Score = 78.6 bits (192), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 77/340 (22%), Positives = 141/340 (41%), Gaps = 44/340 (12%)

Query: 152 ILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHA 211
           +L +M+     P  + ++ ++       N    +  +  M   E E N +++ I+     
Sbjct: 81  LLEEMRESGPVPDAAIYNFVIHALCKARNTAKALDYFRSM---ECEKNVITWTIMIDGLC 137

Query: 212 VARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQEL------P 265
            A     A TY   ++K  T  N  T +VLI  +  + K   + R +  ++E+      P
Sbjct: 138 KANRLPEATTYFAKMKKKGTVPNEWTYNVLINGFCKVHK---VHRAYLLLKEMKESGLAP 194

Query: 266 NVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASG 325
           NV + S V  I  F R  +V  A +L+ +M     +     YN+++S  C+NG +D+A  
Sbjct: 195 NVVTYSTV--IHGFCRQTKVDTAYKLFRQMVENGCMPNLVTYNTLLSGLCRNGLMDEAYE 252

Query: 326 LLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKA------------------------ 361
           LL EM   G +P+  +Y  L  G  K+  ++   K                         
Sbjct: 253 LLDEMRERGLQPDKFSYDTLMAGLCKTGKIDMALKVFEDNSNGDCPPDVVAYSTLIAGLC 312

Query: 362 ----LELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTF 417
               L+   KL    +  S  P + T  ++++   +   +  A+ + E ++  N T    
Sbjct: 313 KAGRLDEACKLFEKMRENSCEPDVVTFTALMDGLCKGDRLQEAQQVLETMEDRNCTPNVI 372

Query: 418 VYNTLIKAYVK-AKINDPN-LLRRMILGGARPDAETYSLL 455
            Y++LI    K  ++ D   + +RMI+ G  P+  TY+ L
Sbjct: 373 TYSSLIDGLCKTGQVRDAQEVFKRMIVRGIEPNVVTYNSL 412



 Score = 75.1 bits (183), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 75/337 (22%), Positives = 140/337 (41%), Gaps = 19/337 (5%)

Query: 125 GHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGL 184
           G   +   +NRL        R     +IL+      + P+V T+ ++++      +++  
Sbjct: 19  GFDHNVYTYNRLFEALLRARRIDETCHILKNGWPPGITPNVFTYAVVIQGLCKSGDLDKA 78

Query: 185 MKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIIL 244
            ++  +M+ S   P+   Y  +  A   AR    A  Y  ++E       W+      I+
Sbjct: 79  CELLEEMRESGPVPDAAIYNFVIHALCKARNTAKALDYFRSMECEKNVITWT------IM 132

Query: 245 YGYLAKGKDLERI---WATVQELPNVRSK-SYVLAIEAFGRIAQVSRAEELWLEMQSVKQ 300
              L K   L      +A +++   V ++ +Y + I  F ++ +V RA  L  EM+    
Sbjct: 133 IDGLCKANRLPEATTYFAKMKKKGTVPNEWTYNVLINGFCKVHKVHRAYLLLKEMKESGL 192

Query: 301 LKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFK 360
                 Y++VI  +C+   +D A  L ++M  NGC PN +TY  L  G  ++ L++E + 
Sbjct: 193 APNVVTYSTVIHGFCRQTKVDTAYKLFRQMVENGCMPNLVTYNTLLSGLCRNGLMDEAY- 251

Query: 361 ALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYN 420
                 +L+   + R   P   +  +++    + G +  A  +FE+    +       Y+
Sbjct: 252 ------ELLDEMRERGLQPDKFSYDTLMAGLCKTGKIDMALKVFEDNSNGDCPPDVVAYS 305

Query: 421 TLIKAYVKAKINDP--NLLRRMILGGARPDAETYSLL 455
           TLI    KA   D    L  +M      PD  T++ L
Sbjct: 306 TLIAGLCKAGRLDEACKLFEKMRENSCEPDVVTFTAL 342


>gi|302784330|ref|XP_002973937.1| hypothetical protein SELMODRAFT_100758 [Selaginella moellendorffii]
 gi|300158269|gb|EFJ24892.1| hypothetical protein SELMODRAFT_100758 [Selaginella moellendorffii]
          Length = 823

 Score = 88.6 bits (218), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 85/379 (22%), Positives = 175/379 (46%), Gaps = 31/379 (8%)

Query: 89  PKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKT 148
           P DY     YN ++ AC+     + +L   ++M+  G   + + +N L+ +    G  K 
Sbjct: 282 PDDYT----YNTMITACIQNSHCQEALRLFQEMKEAGCCPNRVTYNALLDVYGKGGMHKE 337

Query: 149 IPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVE----PNEVSYC 204
              +L +M+A  ++P++ T++ L+   A      GL    + +K+S +     P+E +YC
Sbjct: 338 ASELLVEMEAAGISPNIVTYNELIAAYAR----AGLCDEAAALKKSLLSKGLCPDEFTYC 393

Query: 205 ILATAHAVARLYTVA-ETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQE 263
            L +A   A  Y  A ET+ E + K+    N  T ++LI +YG + K  D+ +++  +QE
Sbjct: 394 TLISAFNRAERYEKALETFTE-MRKTNCTPNIVTYNILIDIYGRMEKLDDMMKVFKFMQE 452

Query: 264 ---LPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFI 320
               P++ + + +L  ++FG    ++    ++ EM+    +   + +N +I  Y + G++
Sbjct: 453 KNCTPDLVTWNSLL--KSFGNCGMLTEVSNVFREMKRAGYMPGVDTFNILIECYGRCGYV 510

Query: 321 DKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEG-FKALELGMKLITTKKVRSSTP 379
           D +  + K +   G +P   T+  L      ++L  EG ++  E   + +    ++ S  
Sbjct: 511 DYSVDIYKGLLRTGLQPTVPTFAALM-----ASLAREGRWQQCEKVSQEMAEAGLQLSD- 564

Query: 380 WLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYT-FVYNTLIKAYVKAKI-NDPNL- 436
                  +I  +A  G         +EL+K+     +  +  T + AY K  + N+  L 
Sbjct: 565 --ACHAGLIHSYANSGQFFQLRKYIDELEKSAKQPLSGILCKTFVLAYCKCGMDNEAQLA 622

Query: 437 LRRMILGGARPDAETYSLL 455
           L ++   G  PD + ++ +
Sbjct: 623 LNQLYDNGHSPDIKVFNAM 641



 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 80/300 (26%), Positives = 132/300 (44%), Gaps = 18/300 (6%)

Query: 165 VSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEV-SYCILATAHAVARLYTVAETYV 223
           V+T  IL  +  N   +   ++++  +K+ E    +V +Y  L +  + AR +    T  
Sbjct: 178 VATASIL-SVLGNHEQLPAALELFESLKQDESYSLDVYAYTSLISILSRARRFDEGITLF 236

Query: 224 EALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVR----SKSYVLAIEAF 279
           E +++     N  T +V++ LYG   +G   +RI +  QE+ ++       +Y   I A 
Sbjct: 237 ETMQREGQRGNAVTYNVMLDLYG--KRGDSWDRIQSLFQEMKDLEISPDDYTYNTMITAC 294

Query: 280 GRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNA 339
            + +    A  L+ EM+          YN+++ VY K G   +AS LL EM   G  PN 
Sbjct: 295 IQNSHCQEALRLFQEMKEAGCCPNRVTYNALLDVYGKGGMHKEASELLVEMEAAGISPNI 354

Query: 340 ITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGN 399
           +TY  L     ++ L +E   A  L   L++    +   P   T  ++I  F        
Sbjct: 355 VTYNELIAAYARAGLCDE---AAALKKSLLS----KGLCPDEFTYCTLISAFNRAERYEK 407

Query: 400 AENLFEELKKANYTKYTFVYNTLIKAYVK-AKIND-PNLLRRMILGGARPDAETY-SLLK 456
           A   F E++K N T     YN LI  Y +  K++D   + + M      PD  T+ SLLK
Sbjct: 408 ALETFTEMRKTNCTPNIVTYNILIDIYGRMEKLDDMMKVFKFMQEKNCTPDLVTWNSLLK 467



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 82/427 (19%), Positives = 172/427 (40%), Gaps = 63/427 (14%)

Query: 43  KRALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQGEKLFCCIPKDYQNEL---LYN 99
           K+ALEV EW+ +   ++ + +  + +L     +  +    +LF  + +D    L    Y 
Sbjct: 158 KKALEVFEWIRKHDCFKLRGVATASILSVLGNHEQLPAALELFESLKQDESYSLDVYAYT 217

Query: 100 NLVIAC-----LDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRR-KTIPNIL 153
           +L+         D+G+     E M++    G++++Y   N ++ L    G     I ++ 
Sbjct: 218 SLISILSRARRFDEGITLF--ETMQREGQRGNAVTY---NVMLDLYGKRGDSWDRIQSLF 272

Query: 154 RQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVA 213
           ++MK  +++P   T++ ++     + + +  ++++ +MK +   PN V+Y  L   +   
Sbjct: 273 QEMKDLEISPDDYTYNTMITACIQNSHCQEALRLFQEMKEAGCCPNRVTYNALLDVYGKG 332

Query: 214 RLYTVAETYVEALEKSMTGNNWSTLDVLIILY---GYLAKGKDLERIWATVQELPNVRSK 270
            ++  A   +  +E +    N  T + LI  Y   G   +   L++   +    P+    
Sbjct: 333 GMHKEASELLVEMEAAGISPNIVTYNELIAAYARAGLCDEAAALKKSLLSKGLCPD--EF 390

Query: 271 SYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEM 330
           +Y   I AF R  +  +A E + EM+          YN +I +Y +   +D    + K M
Sbjct: 391 TYCTLISAFNRAERYEKALETFTEMRKTNCTPNIVTYNILIDIYGRMEKLDDMMKVFKFM 450

Query: 331 SMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEI 390
               C P+ +T+                                           S+++ 
Sbjct: 451 QEKNCTPDLVTWN------------------------------------------SLLKS 468

Query: 391 FAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKIND--PNLLRRMILGGARPD 448
           F   G +    N+F E+K+A Y      +N LI+ Y +    D   ++ + ++  G +P 
Sbjct: 469 FGNCGMLTEVSNVFREMKRAGYMPGVDTFNILIECYGRCGYVDYSVDIYKGLLRTGLQPT 528

Query: 449 AETYSLL 455
             T++ L
Sbjct: 529 VPTFAAL 535



 Score = 61.6 bits (148), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 90/481 (18%), Positives = 176/481 (36%), Gaps = 101/481 (20%)

Query: 60  PKELDYSYLLEFTIKNHGISQGEKLF-------CCIPKDYQNELLYNNLVIACLDKGVIK 112
           P +  Y+ ++   I+N    +  +LF       CC      N + YN L+      G+ K
Sbjct: 282 PDDYTYNTMITACIQNSHCQEALRLFQEMKEAGCC-----PNRVTYNALLDVYGKGGMHK 336

Query: 113 LSLEYMKKMRVLGHSISYLVFNRLIILNSSPG---------------------------- 144
            + E + +M   G S + + +N LI   +  G                            
Sbjct: 337 EASELLVEMEAAGISPNIVTYNELIAAYARAGLCDEAAALKKSLLSKGLCPDEFTYCTLI 396

Query: 145 -------RRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVE 197
                  R +       +M+     P++ T++IL+ I      ++ +MKV+  M+     
Sbjct: 397 SAFNRAERYEKALETFTEMRKTNCTPNIVTYNILIDIYGRMEKLDDMMKVFKFMQEKNCT 456

Query: 198 PNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILY---GYLAKGKDL 254
           P+ V++  L  +     + T        ++++       T ++LI  Y   GY+    D+
Sbjct: 457 PDLVTWNSLLKSFGNCGMLTEVSNVFREMKRAGYMPGVDTFNILIECYGRCGYVDYSVDI 516

Query: 255 ERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEM------------------- 295
            +        P V + + ++A  +  R  +  + E++  EM                   
Sbjct: 517 YKGLLRTGLQPTVPTFAALMA--SLAREGRWQQCEKVSQEMAEAGLQLSDACHAGLIHSY 574

Query: 296 -----------------QSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPN 338
                            +S KQ  +     + +  YCK G  ++A   L ++  NG  P+
Sbjct: 575 ANSGQFFQLRKYIDELEKSAKQPLSGILCKTFVLAYCKCGMDNEAQLALNQLYDNGHSPD 634

Query: 339 AITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSST--PWLETTLSIIEIFAEKGD 396
              +  +   C K   +E   K LE         ++R +   P   T   ++ ++  +G 
Sbjct: 635 IKVFNAMISMCAKRGWIERAVKLLE---------EIRKAQLKPDGVTYNCLMSMYGREGM 685

Query: 397 VGNAENLFEELKKANYTKYTFVYNTLIKAYVK-AKIND-PNLLRRMILGGARPDAETYSL 454
              AE +  E+++A        YNTL+ +Y K  +++D   +   M+    RPD  T++ 
Sbjct: 686 YYKAEEVMSEMRRAGKAPNLITYNTLLYSYTKHGRMDDAARVFGDMVAARVRPDNFTFNT 745

Query: 455 L 455
           L
Sbjct: 746 L 746



 Score = 47.8 bits (112), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 67/341 (19%), Positives = 138/341 (40%), Gaps = 52/341 (15%)

Query: 87  CIPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRR 146
           C P    + + +N+L+ +  + G++       ++M+  G+      FN LI      G  
Sbjct: 455 CTP----DLVTWNSLLKSFGNCGMLTEVSNVFREMKRAGYMPGVDTFNILIECYGRCGYV 510

Query: 147 KTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCIL 206
               +I + +    + P V TF  LM   A +   +   KV  +M  + ++ ++  +  L
Sbjct: 511 DYSVDIYKGLLRTGLQPTVPTFAALMASLAREGRWQQCEKVSQEMAEAGLQLSDACHAGL 570

Query: 207 ATAHAVARLYTVAETYVEALEKS----MTG---------------------------NNW 235
             ++A +  +     Y++ LEKS    ++G                           +N 
Sbjct: 571 IHSYANSGQFFQLRKYIDELEKSAKQPLSGILCKTFVLAYCKCGMDNEAQLALNQLYDNG 630

Query: 236 STLDVLII--LYGYLAKGKDLERIWATVQELPNVRSK----SYVLAIEAFGRIAQVSRAE 289
            + D+ +   +    AK   +ER    ++E+   + K    +Y   +  +GR     +AE
Sbjct: 631 HSPDIKVFNAMISMCAKRGWIERAVKLLEEIRKAQLKPDGVTYNCLMSMYGREGMYYKAE 690

Query: 290 ELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHL---- 345
           E+  EM+   +      YN+++  Y K+G +D A+ +  +M     +P+  T+  L    
Sbjct: 691 EVMSEMRRAGKAPNLITYNTLLYSYTKHGRMDDAARVFGDMVAARVRPDNFTFNTLVGSY 750

Query: 346 -ALGCFKSNL------VEEGFKALELGMKLITTKKVRSSTP 379
            +LG +K  L       E G +  ++  K +     R+++P
Sbjct: 751 SSLGLYKEALSVIEYMTEHGCQPTQITFKALLDGYNRNASP 791


>gi|357120470|ref|XP_003561950.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Brachypodium distachyon]
          Length = 925

 Score = 88.6 bits (218), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 97/394 (24%), Positives = 159/394 (40%), Gaps = 52/394 (13%)

Query: 102 VIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRR--KTIPNILRQMKAD 159
           ++A  D G I+ + +    M+  G   +   +  LI      G+R  +    +  +M  D
Sbjct: 340 IVALCDMGRIEDAWKIFIDMKKKGCKPNVYTYTSLI-----SGQRVSRMAIGLFHRMSRD 394

Query: 160 KVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVA 219
            V P+  T++ LM +   +  I+  + V++ M +    PN  SY  L   +      T+ 
Sbjct: 395 GVVPNTVTYNALMNVLMENMEIDSALIVFNMMGKHGCLPNTSSYNELIRGYC-----TIG 449

Query: 220 ET--YVEALEKSMTGNNWSTLDVL-IILYGYLAKGKDLERIWATVQELPNVRSK-----S 271
           +T   +  L   + G    TL    II+ GY   G     +   V EL           S
Sbjct: 450 DTEKAMSMLTNMLKGRPTPTLVTYNIIIKGYCDSGD--TDVAIRVLELMKANGCQPDEWS 507

Query: 272 YVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMS 331
           Y   I  F +I+++  A  ++ EM           Y ++IS YCK+  +D A+ +L+ M 
Sbjct: 508 YTELISGFCKISKMELASGMFNEMMDRGLCPNEVTYTALISGYCKDEKLDCAARMLERMK 567

Query: 332 MNGCKPNAITYRHLALGCFKSN-----------LVEEGFK-----------------ALE 363
            +GC+PN  TY  L  G  K N           ++EE                    A+ 
Sbjct: 568 RSGCRPNVQTYNVLIHGLTKQNNFSGAEELCKVMLEEKISPDVVTYSTVINGLCNNGAIP 627

Query: 364 LGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLI 423
           L +++          P L T  S+I+   ++G V  AE +F ELKK         Y  +I
Sbjct: 628 LALEMFNKMVKHGCLPNLHTYSSLIQALGQEGRVEEAEEMFSELKKQGLIPDEVTYVKMI 687

Query: 424 KAYVKAKINDP--NLLRRMILGGARPDAETYSLL 455
           +  V +   D   + L  MI  G +P  +TY +L
Sbjct: 688 EVCVMSGKVDRAFDFLGEMINAGCQPTLQTYDVL 721



 Score = 72.8 bits (177), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 93/435 (21%), Positives = 163/435 (37%), Gaps = 38/435 (8%)

Query: 35  RLRKLQLNKRALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQGEKLFCCIPKD--Y 92
           +L KL +    ++    ++RE   +P  L Y+ ++    K+  +   E +   + K    
Sbjct: 202 QLNKLNMTSTVMDRYHQILREG-LQPNLLIYNSVINALCKDGNVRDAESIINKVFKSGMK 260

Query: 93  QNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNI 152
            +   Y ++++       +  + E   +M   G   +   ++ LI    + GR     + 
Sbjct: 261 PDTFTYTSMILGYCRNRDLDSAFEIFNRMDEEGCEPNAATYSTLINGLCNSGRVNEALDF 320

Query: 153 LRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAV 212
           + +M    V P V TF   +    +   IE   K++ DMK+   +PN  +Y  L +   V
Sbjct: 321 ISEMTRHGVLPTVHTFTAPIVALCDMGRIEDAWKIFIDMKKKGCKPNVYTYTSLISGQRV 380

Query: 213 ARLY-----------TVAETYV-EALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWAT 260
           +R+             V  T    AL   +  N    +D  +I++  + K          
Sbjct: 381 SRMAIGLFHRMSRDGVVPNTVTYNALMNVLMEN--MEIDSALIVFNMMGKHGC------- 431

Query: 261 VQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFI 320
              LPN  + SY   I  +  I    +A  +   M   +       YN +I  YC +G  
Sbjct: 432 ---LPN--TSSYNELIRGYCTIGDTEKAMSMLTNMLKGRPTPTLVTYNIIIKGYCDSGDT 486

Query: 321 DKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPW 380
           D A  +L+ M  NGC+P+  +Y  L  G  K          +EL   +      R   P 
Sbjct: 487 DVAIRVLELMKANGCQPDEWSYTELISGFCK-------ISKMELASGMFNEMMDRGLCPN 539

Query: 381 LETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAK--INDPNLLR 438
             T  ++I  + +   +  A  + E +K++        YN LI    K         L +
Sbjct: 540 EVTYTALISGYCKDEKLDCAARMLERMKRSGCRPNVQTYNVLIHGLTKQNNFSGAEELCK 599

Query: 439 RMILGGARPDAETYS 453
            M+     PD  TYS
Sbjct: 600 VMLEEKISPDVVTYS 614



 Score = 58.9 bits (141), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 48/184 (26%), Positives = 74/184 (40%), Gaps = 8/184 (4%)

Query: 272 YVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMS 331
           Y   I A  +   V  AE +  ++        T  Y S+I  YC+N  +D A  +   M 
Sbjct: 231 YNSVINALCKDGNVRDAESIINKVFKSGMKPDTFTYTSMILGYCRNRDLDSAFEIFNRMD 290

Query: 332 MNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIF 391
             GC+PNA TY  L  G   S  V E        +  I+        P + T  + I   
Sbjct: 291 EEGCEPNAATYSTLINGLCNSGRVNE-------ALDFISEMTRHGVLPTVHTFTAPIVAL 343

Query: 392 AEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKINDPNLLRRMILGGARPDAET 451
            + G + +A  +F ++KK       + Y +LI     +++    L  RM   G  P+  T
Sbjct: 344 CDMGRIEDAWKIFIDMKKKGCKPNVYTYTSLISGQRVSRMAI-GLFHRMSRDGVVPNTVT 402

Query: 452 YSLL 455
           Y+ L
Sbjct: 403 YNAL 406



 Score = 56.6 bits (135), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 59/254 (23%), Positives = 108/254 (42%), Gaps = 5/254 (1%)

Query: 98  YNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMK 157
           YN ++    D G   +++  ++ M+  G       +  LI       + +    +  +M 
Sbjct: 473 YNIIIKGYCDSGDTDVAIRVLELMKANGCQPDEWSYTELISGFCKISKMELASGMFNEMM 532

Query: 158 ADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYT 217
              + P+  T+  L+     D  ++   ++   MKRS   PN  +Y +L         ++
Sbjct: 533 DRGLCPNEVTYTALISGYCKDEKLDCAARMLERMKRSGCRPNVQTYNVLIHGLTKQNNFS 592

Query: 218 VAETYVEA-LEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQE--LPNVRSKSYVL 274
            AE   +  LE+ ++ +  +   V+  L    A    LE     V+   LPN+ + S + 
Sbjct: 593 GAEELCKVMLEEKISPDVVTYSTVINGLCNNGAIPLALEMFNKMVKHGCLPNLHTYSSL- 651

Query: 275 AIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNG 334
            I+A G+  +V  AEE++ E++    +     Y  +I V   +G +D+A   L EM   G
Sbjct: 652 -IQALGQEGRVEEAEEMFSELKKQGLIPDEVTYVKMIEVCVMSGKVDRAFDFLGEMINAG 710

Query: 335 CKPNAITYRHLALG 348
           C+P   TY  L  G
Sbjct: 711 CQPTLQTYDVLIKG 724



 Score = 41.2 bits (95), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 69/331 (20%), Positives = 132/331 (39%), Gaps = 58/331 (17%)

Query: 38  KLQLNKRALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQGEKLFCCI---PKDYQN 94
           KL    R LE M    +    RP    Y+ L+    K +  S  E+L C +    K   +
Sbjct: 555 KLDCAARMLERM----KRSGCRPNVQTYNVLIHGLTKQNNFSGAEEL-CKVMLEEKISPD 609

Query: 95  ELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILR 154
            + Y+ ++    + G I L+LE               +FN+++       +   +PN+  
Sbjct: 610 VVTYSTVINGLCNNGAIPLALE---------------MFNKMV-------KHGCLPNL-- 645

Query: 155 QMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVAR 214
                       T+  L++    +  +E   +++S++K+  + P+EV+Y  +     ++ 
Sbjct: 646 -----------HTYSSLIQALGQEGRVEEAEEMFSELKKQGLIPDEVTYVKMIEVCVMSG 694

Query: 215 LYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSKSYVL 274
               A  ++  +  +       T DVLI       KG   E ++  +  LPN  S S   
Sbjct: 695 KVDRAFDFLGEMINAGCQPTLQTYDVLI-------KGLQNEMVYHKLVALPNAASTSTFD 747

Query: 275 AIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNG 334
                  +  V  ++   L+ +  +QL     Y++++S   ++G   +A+ L + M    
Sbjct: 748 DQIINKDVISVLSSKLAELDFELSRQL-----YDALLSRLSRSGRWFEANNLYRSMVSQS 802

Query: 335 CKPNAITYRHL---ALGCFKSNLVEEGFKAL 362
             PN  TY+H     L   K +L  + FK +
Sbjct: 803 QCPNQDTYKHFLISLLRALKVDLAMDVFKHM 833


>gi|357442213|ref|XP_003591384.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355480432|gb|AES61635.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 539

 Score = 88.6 bits (218), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 91/436 (20%), Positives = 191/436 (43%), Gaps = 22/436 (5%)

Query: 7   GEPVGSAFQSWMREGFPVHRGEIFHSINRLRKLQLNKRALEVMEWVIRERPYRPKELDYS 66
           G  V      ++ EG  + + E+   +  LRK +    A E+MEW++  R       +Y+
Sbjct: 103 GGTVSQTLNQYIIEGKALGKDELERCVQELRKYRRFHHAFEIMEWMMM-RQINFSWDNYA 161

Query: 67  YLLEFTIKNHGISQGEKLFCCIPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGH 126
             L+   K  G+ + E  F   P   +N+  Y +L+     + ++  +L +  KM   G+
Sbjct: 162 VYLDLVSKVKGVVEAENHFNSFPPPAKNKYTYGSLLNCYCKELMLDKALSHFDKMDEFGY 221

Query: 127 SISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMK 186
            ++ L F  L+ +     +   +P ++  MK  K+     T+ + M   A  +++  + +
Sbjct: 222 -LTSLSFTNLMSMYMRLSQPSKVPQLVNVMKERKIRMTEFTYILWMNSCAALNDLGEVER 280

Query: 187 VYSDMKR-SEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILY 245
           VY +MKR  E + +  +Y  LA  +  A  +  AE  ++ +E  M      T   L+ LY
Sbjct: 281 VYEEMKREDEDKIDWKTYSNLAAIYIKAGFFEKAELMLKKVEGVMKPRQRETYHFLLSLY 340

Query: 246 GYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATE 305
                 K++ R+W T++++  V ++SY++ +    R+  +    +L+ E +S      + 
Sbjct: 341 AGTGNVKEVYRVWGTLKKITPVTNRSYLIMLSNLRRLNDMEGIIKLFKEWESRHVSYDSR 400

Query: 306 QYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEG-----FK 360
                +  Y     +DK + L+ E ++  C+      R +    F ++L+E+G       
Sbjct: 401 LVGVAVQAYLSQN-MDKEAVLVFEEALKSCRGPFFRIREM----FMASLLEKGQLDGAMS 455

Query: 361 ALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYN 420
            LE  +   +  K +   P  +   + ++ + E+ D+   + L + L+  N+ +      
Sbjct: 456 HLEAALSEASDYKYQ---PSPQVVSAFLKYYEEETDLDGVDELSKILRSHNFDE------ 506

Query: 421 TLIKAYVKAKINDPNL 436
           + IK  + A  + P +
Sbjct: 507 SYIKTCITASESSPGI 522


>gi|413952776|gb|AFW85425.1| chloroplast RNA splicing4 [Zea mays]
          Length = 1435

 Score = 88.2 bits (217), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 79/349 (22%), Positives = 155/349 (44%), Gaps = 24/349 (6%)

Query: 121 MRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHN 180
           +R  G   +  VFN ++ + +  GR      +L  M    + P + +F+ L+   +    
Sbjct: 212 LRFAGEGATVQVFNAMMGVYARSGRFDDARQLLDTMHDRGIDPDLVSFNTLINARSKSGC 271

Query: 181 IEG--LMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTL 238
           +     + +  ++++S + P+ ++Y  L +A + +     A T  E +  S    +  T 
Sbjct: 272 LAAGVALDLLFEVRQSGLRPDVITYNTLISACSQSSNLEDAVTVFEDMIASECRPDLWTY 331

Query: 239 DVLIILYGYLAKGKDLERIWATVQE---LPNVRSKSYVLAIEAFGRIAQVSRAEELWLEM 295
           + ++ ++G   K ++ ER++  + E   +P+  + +Y   + AF +   V + E    ++
Sbjct: 332 NAMVSVHGRCGKAEEAERLFRELVEKGFMPD--AITYNSLLYAFAKEGNVDKVEHTCEQL 389

Query: 296 QSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLV 355
                 K    YN++I +Y K G +D A GL  EM   GC P+A+TY  +     K N +
Sbjct: 390 VKAGFKKNEITYNTMIHMYGKMGRLDLAVGLYDEMRAMGCTPDAVTYTVMIDSLGKMNRI 449

Query: 356 EEGFKALE----LGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKAN 411
            E  K LE     G+K           P L    ++I  +A+ G   +AEN F+ +  + 
Sbjct: 450 AEAGKVLEDMTDAGLK-----------PTLIAFSALICAYAKGGRRADAENTFDCMIASG 498

Query: 412 YTKYTFVYNTLIKAYVKAKINDPNLL--RRMILGGARPDAETYSLLKLA 458
                  Y  ++  + ++   +  L   R+M+    RPD + Y +L +A
Sbjct: 499 VKPDRLAYLVMLDVFARSGDTEKMLCLYRKMMNDNYRPDDDMYQVLLVA 547



 Score = 49.3 bits (116), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 68/284 (23%), Positives = 119/284 (41%), Gaps = 37/284 (13%)

Query: 206  LATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELP 265
            L  A+A + LY  A    + + K  TG   +   V  ++   +  G+ L+ ++  V+EL 
Sbjct: 786  LIHAYAESGLYEKARAVFDNMIK--TGPLPTVDSVNGMMRALIVDGR-LDELYVVVEELQ 842

Query: 266  NVR---SKSYVLAI-EAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFID 321
            ++    SKS VL + +AF +   V    +++  M++   L     Y S+IS+ C +    
Sbjct: 843  DMNFKISKSTVLLLLDAFAKAGDVFEVMKIYNGMKAAGYLPNMHLYRSMISLLCHHNRFR 902

Query: 322  KASGLLKEMSMNGCKP-----NAITYRHLALGCFKS------NLVEEGFKA--------- 361
                ++ EM   G KP     NA+   + A G F        +++E G +          
Sbjct: 903  DVELMIAEMEGAGFKPDLAILNALLNMYTAAGNFDRTTQVYRSILEAGLEPDEDTYNTLI 962

Query: 362  --------LELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYT 413
                     E G  L+     R  TP L++  S++   A+      A+ +FEE++  +Y 
Sbjct: 963  VMYCRSFRPEEGFTLLNEMGKRGLTPKLQSYKSLLAASAKAELREQADQIFEEMRSKSYQ 1022

Query: 414  KYTFVYNTLIKAYVKAKINDP--NLLRRMILGGARPDAETYSLL 455
                +Y+ ++K Y  A  +    NLL  M   G  P   T  +L
Sbjct: 1023 LNRSIYHMMMKIYRNAGNHSKAENLLAVMKEDGIEPTIATMHIL 1066



 Score = 45.1 bits (105), Expect = 0.070,   Method: Compositional matrix adjust.
 Identities = 60/311 (19%), Positives = 128/311 (41%), Gaps = 13/311 (4%)

Query: 59  RPKELDYSYLLEFTIKNHGISQGEKLFC-CIPKDYQ-NELLYNNLVIACLDKGVIKLSLE 116
           RP    Y+ ++    +     + E+LF   + K +  + + YN+L+ A   +G +     
Sbjct: 325 RPDLWTYNAMVSVHGRCGKAEEAERLFRELVEKGFMPDAITYNSLLYAFAKEGNVDKVEH 384

Query: 117 YMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEA 176
             +++   G   + + +N +I +    GR      +  +M+A    P   T+ +++    
Sbjct: 385 TCEQLVKAGFKKNEITYNTMIHMYGKMGRLDLAVGLYDEMRAMGCTPDAVTYTVMIDSLG 444

Query: 177 NDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWS 236
             + I    KV  DM  + ++P  +++  L  A+A       AE   + +  S  G    
Sbjct: 445 KMNRIAEAGKVLEDMTDAGLKPTLIAFSALICAYAKGGRRADAENTFDCMIAS--GVKPD 502

Query: 237 TLDVLIILYGYLAKGKDLERIWATVQELPNVRSKS----YVLAIEAFGRIAQVSRAEELW 292
            L  L++L    A+  D E++    +++ N   +     Y + + A  +  +    EE+ 
Sbjct: 503 RLAYLVML-DVFARSGDTEKMLCLYRKMMNDNYRPDDDMYQVLLVALAKEDKCEEIEEVI 561

Query: 293 LEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKS 352
            +M+ + ++        +I   C    + + + LLK+  + G KP+  + R +      +
Sbjct: 562 QDMELLCRMNLGIISTMLIKARC----VSQGAKLLKKACLQGYKPDIKSLRSIMNAYVMT 617

Query: 353 NLVEEGFKALE 363
              EEG   LE
Sbjct: 618 EKHEEGLSLLE 628



 Score = 40.8 bits (94), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 40/179 (22%), Positives = 69/179 (38%), Gaps = 30/179 (16%)

Query: 305  EQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALE- 363
            + YN++I +YC++   ++   LL EM   G  P   +Y+ L     K+ L E+  +  E 
Sbjct: 956  DTYNTLIVMYCRSFRPEEGFTLLNEMGKRGLTPKLQSYKSLLAASAKAELREQADQIFEE 1015

Query: 364  --------------LGMK-------------LITTKKVRSSTPWLETTLSIIEIFAEKGD 396
                          + MK             L+   K     P + T   ++  +   G 
Sbjct: 1016 MRSKSYQLNRSIYHMMMKIYRNAGNHSKAENLLAVMKEDGIEPTIATMHILMTSYGTAGQ 1075

Query: 397  VGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKI--NDPNLLRRMILGGARPDAETYS 453
               AEN+   LK ++    T  Y+T+  AY+K     +    L  M   G  PD + ++
Sbjct: 1076 PREAENVLNNLKSSSLEVSTLPYSTVFDAYLKNGDYNHGTTKLLEMKRDGVEPDHQVWT 1134


>gi|302771417|ref|XP_002969127.1| hypothetical protein SELMODRAFT_61162 [Selaginella moellendorffii]
 gi|300163632|gb|EFJ30243.1| hypothetical protein SELMODRAFT_61162 [Selaginella moellendorffii]
          Length = 646

 Score = 88.2 bits (217), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 87/384 (22%), Positives = 173/384 (45%), Gaps = 41/384 (10%)

Query: 89  PKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKT 148
           P DY     YN ++ AC+     + +L   ++M+  G   + + +N L+ +    G  K 
Sbjct: 143 PDDYT----YNTMITACIQNSHCQEALRLFQEMKEAGCCPNRVTYNALLDVYGKGGMHKE 198

Query: 149 IPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVE----PNEVSYC 204
              +L +M+A  ++P++ T++ L+   A      GL    + +K+S +     P+E +YC
Sbjct: 199 ASELLVEMEAAGISPNIVTYNELIAAYAR----AGLCDEAAALKKSLLSKGLCPDEFTYC 254

Query: 205 ILATAHAVARLYTVA-ETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQE 263
            L +A   A  Y  A ET+ E + K+    N  T ++LI +YG + K  D+ +++  +QE
Sbjct: 255 TLISAFNRAERYEKALETFTE-MRKTNCTPNIVTYNILIDIYGRMEKLDDMMKVFKFMQE 313

Query: 264 ---LPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFI 320
               P++ + + +L  ++FG    ++    ++ EM+    +   + +N +I  Y + G++
Sbjct: 314 KNCTPDLVTWNSLL--KSFGNCGMLTEVSNVFREMKRAGYMPGVDTFNILIECYGRCGYV 371

Query: 321 DKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPW 380
           D +  + K +   G +P   T+  L      ++L  EG        +    +KV      
Sbjct: 372 DYSVDIYKGLLRTGLQPTVPTFAALM-----ASLAREG--------RWQQCEKVSQEMAE 418

Query: 381 LETTLS------IIEIFAEKGDVGNAENLFEELKKANYTKYT-FVYNTLIKAYVKAKI-N 432
               LS      +I  +A  G         +EL+K+     +  +  T + AY K  + N
Sbjct: 419 AGLQLSDACHAGLIHSYANSGQFFQLRKYIDELEKSAKQPLSGILCKTFVLAYCKCCMDN 478

Query: 433 DPNL-LRRMILGGARPDAETYSLL 455
           +  L L ++   G  PD + ++ +
Sbjct: 479 EAQLALNQLYDNGHSPDIKVFNAM 502



 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 80/300 (26%), Positives = 132/300 (44%), Gaps = 18/300 (6%)

Query: 165 VSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEV-SYCILATAHAVARLYTVAETYV 223
           V+T  IL  +  N   +   ++++  +K+ E    +V +Y  L +  + AR +    T  
Sbjct: 39  VATASIL-SVLGNHEQLPAALELFESLKQDESYSLDVYAYTSLISILSRARRFDEGITLF 97

Query: 224 EALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVR----SKSYVLAIEAF 279
           E +++     N  T +V++ LYG   +G   +RI +  QE+ ++       +Y   I A 
Sbjct: 98  ETMQREGQRGNAVTYNVMLDLYG--KRGDSWDRIQSLFQEMKDLEISPDDYTYNTMITAC 155

Query: 280 GRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNA 339
            + +    A  L+ EM+          YN+++ VY K G   +AS LL EM   G  PN 
Sbjct: 156 IQNSHCQEALRLFQEMKEAGCCPNRVTYNALLDVYGKGGMHKEASELLVEMEAAGISPNI 215

Query: 340 ITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGN 399
           +TY  L     ++ L +E   A  L   L++    +   P   T  ++I  F        
Sbjct: 216 VTYNELIAAYARAGLCDE---AAALKKSLLS----KGLCPDEFTYCTLISAFNRAERYEK 268

Query: 400 AENLFEELKKANYTKYTFVYNTLIKAYVKA-KIND-PNLLRRMILGGARPDAETY-SLLK 456
           A   F E++K N T     YN LI  Y +  K++D   + + M      PD  T+ SLLK
Sbjct: 269 ALETFTEMRKTNCTPNIVTYNILIDIYGRMEKLDDMMKVFKFMQEKNCTPDLVTWNSLLK 328



 Score = 71.6 bits (174), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 82/427 (19%), Positives = 172/427 (40%), Gaps = 63/427 (14%)

Query: 43  KRALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQGEKLFCCIPKDYQNEL---LYN 99
           K+ALEV EW+ +   ++ + +  + +L     +  +    +LF  + +D    L    Y 
Sbjct: 19  KKALEVFEWIRKHDCFKLRGVATASILSVLGNHEQLPAALELFESLKQDESYSLDVYAYT 78

Query: 100 NLVIAC-----LDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRR-KTIPNIL 153
           +L+         D+G+     E M++    G++++Y   N ++ L    G     I ++ 
Sbjct: 79  SLISILSRARRFDEGITLF--ETMQREGQRGNAVTY---NVMLDLYGKRGDSWDRIQSLF 133

Query: 154 RQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVA 213
           ++MK  +++P   T++ ++     + + +  ++++ +MK +   PN V+Y  L   +   
Sbjct: 134 QEMKDLEISPDDYTYNTMITACIQNSHCQEALRLFQEMKEAGCCPNRVTYNALLDVYGKG 193

Query: 214 RLYTVAETYVEALEKSMTGNNWSTLDVLIILY---GYLAKGKDLERIWATVQELPNVRSK 270
            ++  A   +  +E +    N  T + LI  Y   G   +   L++   +    P+    
Sbjct: 194 GMHKEASELLVEMEAAGISPNIVTYNELIAAYARAGLCDEAAALKKSLLSKGLCPD--EF 251

Query: 271 SYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEM 330
           +Y   I AF R  +  +A E + EM+          YN +I +Y +   +D    + K M
Sbjct: 252 TYCTLISAFNRAERYEKALETFTEMRKTNCTPNIVTYNILIDIYGRMEKLDDMMKVFKFM 311

Query: 331 SMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEI 390
               C P+ +T+                                           S+++ 
Sbjct: 312 QEKNCTPDLVTWN------------------------------------------SLLKS 329

Query: 391 FAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKIND--PNLLRRMILGGARPD 448
           F   G +    N+F E+K+A Y      +N LI+ Y +    D   ++ + ++  G +P 
Sbjct: 330 FGNCGMLTEVSNVFREMKRAGYMPGVDTFNILIECYGRCGYVDYSVDIYKGLLRTGLQPT 389

Query: 449 AETYSLL 455
             T++ L
Sbjct: 390 VPTFAAL 396



 Score = 58.5 bits (140), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 89/481 (18%), Positives = 175/481 (36%), Gaps = 101/481 (20%)

Query: 60  PKELDYSYLLEFTIKNHGISQGEKLF-------CCIPKDYQNELLYNNLVIACLDKGVIK 112
           P +  Y+ ++   I+N    +  +LF       CC      N + YN L+      G+ K
Sbjct: 143 PDDYTYNTMITACIQNSHCQEALRLFQEMKEAGCC-----PNRVTYNALLDVYGKGGMHK 197

Query: 113 LSLEYMKKMRVLGHSISYLVFNRLIILNSSPG---------------------------- 144
            + E + +M   G S + + +N LI   +  G                            
Sbjct: 198 EASELLVEMEAAGISPNIVTYNELIAAYARAGLCDEAAALKKSLLSKGLCPDEFTYCTLI 257

Query: 145 -------RRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVE 197
                  R +       +M+     P++ T++IL+ I      ++ +MKV+  M+     
Sbjct: 258 SAFNRAERYEKALETFTEMRKTNCTPNIVTYNILIDIYGRMEKLDDMMKVFKFMQEKNCT 317

Query: 198 PNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILY---GYLAKGKDL 254
           P+ V++  L  +     + T        ++++       T ++LI  Y   GY+    D+
Sbjct: 318 PDLVTWNSLLKSFGNCGMLTEVSNVFREMKRAGYMPGVDTFNILIECYGRCGYVDYSVDI 377

Query: 255 ERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEM------------------- 295
            +        P V + + ++A  +  R  +  + E++  EM                   
Sbjct: 378 YKGLLRTGLQPTVPTFAALMA--SLAREGRWQQCEKVSQEMAEAGLQLSDACHAGLIHSY 435

Query: 296 -----------------QSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPN 338
                            +S KQ  +     + +  YCK    ++A   L ++  NG  P+
Sbjct: 436 ANSGQFFQLRKYIDELEKSAKQPLSGILCKTFVLAYCKCCMDNEAQLALNQLYDNGHSPD 495

Query: 339 AITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSST--PWLETTLSIIEIFAEKGD 396
              +  +   C K   +E   K LE         ++R +   P   T   ++ ++  +G 
Sbjct: 496 IKVFNAMISMCAKRGWIERAVKLLE---------EIRKAQLKPDGVTYNCLMSMYGREGM 546

Query: 397 VGNAENLFEELKKANYTKYTFVYNTLIKAYVK-AKIND-PNLLRRMILGGARPDAETYSL 454
              AE +  E+++A        YNTL+ +Y K  +++D   +   M+    RPD  T++ 
Sbjct: 547 YHKAEEVMSEMRRAGKAPNLITYNTLLYSYTKHGRMDDAARVFGDMVAARVRPDNFTFNT 606

Query: 455 L 455
           L
Sbjct: 607 L 607



 Score = 45.4 bits (106), Expect = 0.056,   Method: Compositional matrix adjust.
 Identities = 63/315 (20%), Positives = 129/315 (40%), Gaps = 43/315 (13%)

Query: 87  CIPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRR 146
           C P    + + +N+L+ +  + G++       ++M+  G+      FN LI      G  
Sbjct: 316 CTP----DLVTWNSLLKSFGNCGMLTEVSNVFREMKRAGYMPGVDTFNILIECYGRCGYV 371

Query: 147 KTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCIL 206
               +I + +    + P V TF  LM   A +   +   KV  +M  + ++ ++  +  L
Sbjct: 372 DYSVDIYKGLLRTGLQPTVPTFAALMASLAREGRWQQCEKVSQEMAEAGLQLSDACHAGL 431

Query: 207 ATAHAVARLYTVAETYVEALEKS----MTG---------------------------NNW 235
             ++A +  +     Y++ LEKS    ++G                           +N 
Sbjct: 432 IHSYANSGQFFQLRKYIDELEKSAKQPLSGILCKTFVLAYCKCCMDNEAQLALNQLYDNG 491

Query: 236 STLDVLII--LYGYLAKGKDLERIWATVQELPNVRSK----SYVLAIEAFGRIAQVSRAE 289
            + D+ +   +    AK   +ER    ++E+   + K    +Y   +  +GR     +AE
Sbjct: 492 HSPDIKVFNAMISMCAKRGWIERAVKLLEEIRKAQLKPDGVTYNCLMSMYGREGMYHKAE 551

Query: 290 ELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGC 349
           E+  EM+   +      YN+++  Y K+G +D A+ +  +M     +P+  T+  L +G 
Sbjct: 552 EVMSEMRRAGKAPNLITYNTLLYSYTKHGRMDDAARVFGDMVAARVRPDNFTFNTL-VGS 610

Query: 350 FKS-NLVEEGFKALE 363
           + S  L +E    +E
Sbjct: 611 YSSLGLYKEALSVIE 625


>gi|255556466|ref|XP_002519267.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223541582|gb|EEF43131.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 665

 Score = 88.2 bits (217), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 115/509 (22%), Positives = 211/509 (41%), Gaps = 60/509 (11%)

Query: 1   IERLPRGEPVGSA---FQSWMREGFPVHRGEIFHSINRLRKLQLNKRALEVMEWVIRERP 57
           IE+L R   V       Q    EG         + IN  R++ L ++AL+ M + IRE  
Sbjct: 86  IEKLGRECDVDGVQYLLQQMKLEGISCSEDLFINVINTYRRVGLAEQALK-MFYRIREFG 144

Query: 58  YRPKELDYSYLLEFTIKNHGISQGEKLFCCIPKDYQNELLYN-NLVIACLDK-----GVI 111
            +P    Y++LL+  +  +     E ++  + +D +   +Y  N+++  L K     G  
Sbjct: 145 CQPTVKIYNHLLDAMLSENRFQMIEPIYSNMKRDGKEPNVYTYNILLKALCKNNRVDGAC 204

Query: 112 KLSLEYMKK---------------MRVLGH-------SISYL----VFNRLIILNSSPGR 145
           KL +E   K               M  LG        SI +     V+N LI       +
Sbjct: 205 KLLVEMSNKGCEPDVVSYTTVISSMSKLGKVEEARELSIRFQPNVSVYNALINGFCREYK 264

Query: 146 RKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCI 205
            K +  +L QM    + P+V T+  ++   +   N+E  + V++ M      PN  ++  
Sbjct: 265 VKEVFLLLGQMVEKGIDPNVITYSTVISSLSGIGNVELALAVWAKMFVRGCSPNVYTFTS 324

Query: 206 LATAHAV-ARLYTVAETYVEALEKSMTGN--NWSTLDVLIILYGYLAKGKDLERIWATVQ 262
           L   + +  R+      +    E+    N   ++TL     ++G  + GK  E +  + +
Sbjct: 325 LMKGYFMRGRVLEALNIWNRMAEEGFEPNVVAYNTL-----IHGLCSHGKMGEAVSVSSK 379

Query: 263 E-----LPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKN 317
                  PNV   +Y   I+ F +   +  A E+W +M +   +     Y S+++V C++
Sbjct: 380 MERNGCSPNV--STYGALIDGFAKAGDLVGASEIWNKMMTNGCIPNVVVYTSMVNVLCRS 437

Query: 318 GFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSS 377
               +A  L+++MS + C PN +T+     G   S  V       E  + L    +    
Sbjct: 438 SMFSQAWSLIEKMSTDNCPPNTVTFNTFIKGLCCSGRV-------ECAINLFCQMEQYGC 490

Query: 378 TPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVK-AKINDP-N 435
           +P ++T   +++   ++  +  A  L  E+++         YNT+   +    K  +   
Sbjct: 491 SPNIKTYNEVLDGLLKENRIKEALELVTEMEEKGMELNLVTYNTIFGGFCNVGKFEEALK 550

Query: 436 LLRRMILGGARPDAETYSLLKLAEQFQKK 464
           LL +M++GG +PDA TY+ L  A   Q K
Sbjct: 551 LLGKMLVGGVKPDAITYNTLTYAYCMQGK 579



 Score = 79.3 bits (194), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 107/464 (23%), Positives = 186/464 (40%), Gaps = 71/464 (15%)

Query: 30  FHSINRLRKLQLNKRALEVMEWVIRERPYRPKELD-YSYLLEFTIKNHGISQGEKLFCCI 88
           F SI   +  Q  +   ++M     E+  R  ++D   YLL+  +K  GIS  E LF  +
Sbjct: 66  FRSIANSKAFQHTQLTYQIM----IEKLGRECDVDGVQYLLQ-QMKLEGISCSEDLFINV 120

Query: 89  PKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKT 148
              Y+               G+ + +L+   ++R  G   +  ++N L+    S  R + 
Sbjct: 121 INTYRR-------------VGLAEQALKMFYRIREFGCQPTVKIYNHLLDAMLSENRFQM 167

Query: 149 IPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCIL-- 206
           I  I   MK D   P+V T++IL+K    ++ ++G  K+  +M     EP+ VSY  +  
Sbjct: 168 IEPIYSNMKRDGKEPNVYTYNILLKALCKNNRVDGACKLLVEMSNKGCEPDVVSYTTVIS 227

Query: 207 --------------------------ATAHAVARLYTVAETYV---EALEKSMTGNNWST 237
                                     A  +   R Y V E ++   + +EK +  N  + 
Sbjct: 228 SMSKLGKVEEARELSIRFQPNVSVYNALINGFCREYKVKEVFLLLGQMVEKGIDPNVITY 287

Query: 238 LDVLIILYGYLAKGKDLERIWATV---QELPNVRSKSYVLAIEAFGRIAQVSRAEELWLE 294
             V+  L G +   +    +WA +      PNV   ++   ++ +    +V  A  +W  
Sbjct: 288 STVISSLSG-IGNVELALAVWAKMFVRGCSPNVY--TFTSLMKGYFMRGRVLEALNIWNR 344

Query: 295 MQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNL 354
           M           YN++I   C +G + +A  +  +M  NGC PN  TY  L  G  K+  
Sbjct: 345 MAEEGFEPNVVAYNTLIHGLCSHGKMGEAVSVSSKMERNGCSPNVSTYGALIDGFAKAG- 403

Query: 355 VEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTK 414
             +   A E+  K++T   +    P +    S++ +         A +L E++   N   
Sbjct: 404 --DLVGASEIWNKMMTNGCI----PNVVVYTSMVNVLCRSSMFSQAWSLIEKMSTDNCPP 457

Query: 415 YTFVYNTLIKAY-----VKAKINDPNLLRRMILGGARPDAETYS 453
            T  +NT IK       V+  I   NL  +M   G  P+ +TY+
Sbjct: 458 NTVTFNTFIKGLCCSGRVECAI---NLFCQMEQYGCSPNIKTYN 498


>gi|255572426|ref|XP_002527150.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223533489|gb|EEF35232.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 874

 Score = 88.2 bits (217), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 105/473 (22%), Positives = 199/473 (42%), Gaps = 36/473 (7%)

Query: 12  SAFQSWMREGFPVHRGEIFHSINRLRKLQLNKRALEVMEWVIRE---RPYRPKELDYSYL 68
           S F+S +R  FP  +  I+   N L K  + +  +E++ W+ ++       P+   ++ L
Sbjct: 96  SHFKS-LRSNFPEKQPSIY-LYNVLLKSCIRENRVELVSWLYKDMVLARVSPEAYTFNLL 153

Query: 69  LEFTIKNHGISQGEKLFCCIPKD--YQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGH 126
           +     +  +    +LF  +P      NE  +  LV      G+    LE + +MR +G 
Sbjct: 154 IGLLCDSGHLEDARELFDKMPARGCEPNEFTFGILVRGYCRAGLASKGLELLGQMRTMGI 213

Query: 127 SISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMK 186
             + +++N LI      G+      ++ +M+ D + PHV TF+  +        I    +
Sbjct: 214 LPNNVLYNTLISSFCKEGKTHDAEKLVDKMREDGLVPHVETFNSRISALCGSGKILEASR 273

Query: 187 VYSDMKRSE----VEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLI 242
           ++ DM+  E      PN ++Y ++        +   A+T V+ ++++    N  + +  I
Sbjct: 274 IFRDMQIDEELGLPHPNVITYKLMLMGFCKEGMLEEAKTLVDTMKRNANFINLESYN--I 331

Query: 243 ILYGYLAKGKDLERIWATVQELPNVRSK----SYVLAIEAFGRIAQVSRAEELWLEMQSV 298
            L G +  GK LE  W  ++E+  +  +    SY + ++   +   +S A  L   M   
Sbjct: 332 WLLGLIRNGKLLEA-WIVLKEMLGIGIEPDIYSYNIVMDGLCKNGMLSDARMLMGLMIRN 390

Query: 299 KQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEG 358
             L  T  Y++++  YC  G + +A+ LL EM  N C PN  T   L    +K   + E 
Sbjct: 391 GILPDTVTYSTLLHGYCSKGKVFEANNLLHEMISNNCSPNTYTCNVLLHSLWKEGRISEA 450

Query: 359 FKALE------LGMKLITTKKVRSS---TPWLETTLSIIEIFAEKGD--VGNAENLF--- 404
              L+       G+  +T   + ++      L+  + I+      G   +GN  N F   
Sbjct: 451 ENLLQKMNEKGYGVDTVTCNIIINALCNNGQLDKAIEIVNGMWTHGSAALGNLGNSFIGL 510

Query: 405 --EELKKANYTKYTFVYNTLIKAYVKA-KINDP-NLLRRMILGGARPDAETYS 453
             + +     T     Y+T+I    KA +++D       M+  G +PD+  Y 
Sbjct: 511 VDDTISGKKCTPDLVTYSTIISGLCKAGRLDDAKKKFIEMMSKGLQPDSAIYD 563



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 91/391 (23%), Positives = 163/391 (41%), Gaps = 20/391 (5%)

Query: 75  NHGISQGEKLFCCIPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFN 134
           N  IS  + L    P+   +  LYN L+ +C+ +  ++L     K M +   S     FN
Sbjct: 92  NKAISHFKSLRSNFPEKQPSIYLYNVLLKSCIRENRVELVSWLYKDMVLARVSPEAYTFN 151

Query: 135 RLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRS 194
            LI L    G  +    +  +M A    P+  TF IL++           +++   M+  
Sbjct: 152 LLIGLLCDSGHLEDARELFDKMPARGCEPNEFTFGILVRGYCRAGLASKGLELLGQMRTM 211

Query: 195 EVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDL 254
            + PN V Y  L ++         AE  V+ + +     +  T +  I        GK L
Sbjct: 212 GILPNNVLYNTLISSFCKEGKTHDAEKLVDKMREDGLVPHVETFNSRI--SALCGSGKIL 269

Query: 255 E--RIWATVQ-----ELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQY 307
           E  RI+  +Q      LP+    +Y L +  F +   +  A+ L   M+        E Y
Sbjct: 270 EASRIFRDMQIDEELGLPHPNVITYKLMLMGFCKEGMLEEAKTLVDTMKRNANFINLESY 329

Query: 308 NSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMK 367
           N  +    +NG + +A  +LKEM   G +P+  +Y  +  G  K+ ++ +         +
Sbjct: 330 NIWLLGLIRNGKLLEAWIVLKEMLGIGIEPDIYSYNIVMDGLCKNGMLSDA--------R 381

Query: 368 LITTKKVRSST-PWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAY 426
           ++    +R+   P   T  +++  +  KG V  A NL  E+   N +  T+  N L+ + 
Sbjct: 382 MLMGLMIRNGILPDTVTYSTLLHGYCSKGKVFEANNLLHEMISNNCSPNTYTCNVLLHSL 441

Query: 427 VK-AKINDP-NLLRRMILGGARPDAETYSLL 455
            K  +I++  NLL++M   G   D  T +++
Sbjct: 442 WKEGRISEAENLLQKMNEKGYGVDTVTCNII 472



 Score = 55.8 bits (133), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 38/159 (23%), Positives = 71/159 (44%), Gaps = 7/159 (4%)

Query: 271 SYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEM 330
           +Y   I    +  ++  A++ ++EM S      +  Y++ I  +C+ G I  A  +LK+M
Sbjct: 526 TYSTIISGLCKAGRLDDAKKKFIEMMSKGLQPDSAIYDTFIHSFCREGKISSAFQVLKDM 585

Query: 331 SMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEI 390
              GC     TY  L LG    N + E +        LI   + +  +P + T   ++  
Sbjct: 586 EKRGCNKTLQTYNSLILGLGSKNQIFELY-------GLIDEMREKGVSPDVCTYNHMLNC 638

Query: 391 FAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKA 429
             E G + +A ++ +E+ +   +     +  LIKA+ KA
Sbjct: 639 LCEGGRINDAPSVLDEMLQKGISPNISSFRILIKAFCKA 677



 Score = 43.1 bits (100), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 62/292 (21%), Positives = 121/292 (41%), Gaps = 39/292 (13%)

Query: 144 GRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSY 203
           GR     N+L++M          T +I++    N+  ++  +++ + M            
Sbjct: 445 GRISEAENLLQKMNEKGYGVDTVTCNIIINALCNNGQLDKAIEIVNGM------------ 492

Query: 204 CILATAHAVARLYTVAETYVEALEKSMTGN-------NWSTLDVLIILYGYL--AKGKDL 254
                 H  A L  +  +++  ++ +++G         +ST+   +   G L  AK K +
Sbjct: 493 ----WTHGSAALGNLGNSFIGLVDDTISGKKCTPDLVTYSTIISGLCKAGRLDDAKKKFI 548

Query: 255 ERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVY 314
           E +   +Q  P+  S  Y   I +F R  ++S A ++  +M+     K  + YNS+I   
Sbjct: 549 EMMSKGLQ--PD--SAIYDTFIHSFCREGKISSAFQVLKDMEKRGCNKTLQTYNSLILGL 604

Query: 315 CKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKV 374
                I +  GL+ EM   G  P+  TY H+ L C    L E G   +     ++     
Sbjct: 605 GSKNQIFELYGLIDEMREKGVSPDVCTYNHM-LNC----LCEGG--RINDAPSVLDEMLQ 657

Query: 375 RSSTPWLETTLSIIEIFAEKGDVGNAENLFE-ELKKANYTK--YTFVYNTLI 423
           +  +P + +   +I+ F +  D   +  +FE  L    + +  YT ++N L+
Sbjct: 658 KGISPNISSFRILIKAFCKACDFKASHEVFEIALNVCGHKEALYTLMFNELL 709


>gi|240254191|ref|NP_174467.4| pentatricopeptide (PPR) repeat-containing protein [Arabidopsis
           thaliana]
 gi|357528959|sp|Q9C6S6.2|PPR67_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At1g31840
 gi|332193282|gb|AEE31403.1| pentatricopeptide (PPR) repeat-containing protein [Arabidopsis
           thaliana]
          Length = 840

 Score = 88.2 bits (217), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 96/405 (23%), Positives = 177/405 (43%), Gaps = 20/405 (4%)

Query: 53  IRERPYRPKELDYSYLLEFTIKNHGISQGEKLF-CCIPKDYQNEL-LYNNLVIACLDKGV 110
           I +R   P  + YS L++   K   +  G  L+   I   Y  ++ +Y  LV     +G+
Sbjct: 417 ILKRGMEPSIVTYSSLIDGFCKCGNLRSGFALYEDMIKMGYPPDVVIYGVLVDGLSKQGL 476

Query: 111 IKLSLEYMKKMRVLGHSI--SYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTF 168
           +  ++ +  KM  LG SI  + +VFN LI       R      + R M    + P V+TF
Sbjct: 477 MLHAMRFSVKM--LGQSIRLNVVVFNSLIDGWCRLNRFDEALKVFRLMGIYGIKPDVATF 534

Query: 169 HILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEK 228
             +M++   +  +E  + ++  M +  +EP+ ++YC L  A       T+     + +++
Sbjct: 535 TTVMRVSIMEGRLEEALFLFFRMFKMGLEPDALAYCTLIDAFCKHMKPTIGLQLFDLMQR 594

Query: 229 SMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQEL---PNVRSKSYVLAIEAFGRIAQV 285
           +    + +  +V+I L     + +D  + +  + E    P++   +Y   I  +  + ++
Sbjct: 595 NKISADIAVCNVVIHLLFKCHRIEDASKFFNNLIEGKMEPDI--VTYNTMICGYCSLRRL 652

Query: 286 SRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHL 345
             AE ++  ++       T     +I V CKN  +D A  +   M+  G KPNA+TY  L
Sbjct: 653 DEAERIFELLKVTPFGPNTVTLTILIHVLCKNNDMDGAIRMFSIMAEKGSKPNAVTYGCL 712

Query: 346 ALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFE 405
                KS  +E  FK  E         + +  +P + +   II+   ++G V  A N+F 
Sbjct: 713 MDWFSKSVDIEGSFKLFE-------EMQEKGISPSIVSYSIIIDGLCKRGRVDEATNIFH 765

Query: 406 ELKKANYTKYTFVYNTLIKAYVK-AKINDPNLL-RRMILGGARPD 448
           +   A        Y  LI+ Y K  ++ +  LL   M+  G +PD
Sbjct: 766 QAIDAKLLPDVVAYAILIRGYCKVGRLVEAALLYEHMLRNGVKPD 810



 Score = 55.1 bits (131), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 50/229 (21%), Positives = 98/229 (42%), Gaps = 40/229 (17%)

Query: 156 MKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARL 215
           M+ +K++  ++  ++++ +    H IE   K ++++   ++EP+ V+Y  +   +   R 
Sbjct: 592 MQRNKISADIAVCNVVIHLLFKCHRIEDASKFFNNLIEGKMEPDIVTYNTMICGYCSLRR 651

Query: 216 YTVAETYVEALEKSMTGNNWSTLDVLI----------------------------ILYG- 246
              AE   E L+ +  G N  TL +LI                            + YG 
Sbjct: 652 LDEAERIFELLKVTPFGPNTVTLTILIHVLCKNNDMDGAIRMFSIMAEKGSKPNAVTYGC 711

Query: 247 ---YLAKGKDLERIWATVQEL------PNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQS 297
              + +K  D+E  +   +E+      P++   SY + I+   +  +V  A  ++ +   
Sbjct: 712 LMDWFSKSVDIEGSFKLFEEMQEKGISPSI--VSYSIIIDGLCKRGRVDEATNIFHQAID 769

Query: 298 VKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLA 346
            K L     Y  +I  YCK G + +A+ L + M  NG KP+ +  R L+
Sbjct: 770 AKLLPDVVAYAILIRGYCKVGRLVEAALLYEHMLRNGVKPDDLLQRALS 818



 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 68/270 (25%), Positives = 113/270 (41%), Gaps = 25/270 (9%)

Query: 196 VEPNEVSYCILATAHAVARLYTVAETYVE----ALEKSMTGNNWSTLDVLIILYGYLAKG 251
           V P +  Y +L +     R+  +A+ + +     +E S    +   LD L    G + K 
Sbjct: 178 VIPQDSVYRMLNSLIGSDRVDLIADHFDKLCRGGIEPSGVSAHGFVLDALFC-KGEVTKA 236

Query: 252 KDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVI 311
            D  R+         + S + VL   +  +I   SR   L L+      +     + ++I
Sbjct: 237 LDFHRLVMERGFRVGIVSCNKVLKGLSVDQIEVASRLLSLVLDCGPAPNVVT---FCTLI 293

Query: 312 SVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFK----ALELGMK 367
           + +CK G +D+A  L K M   G +P+ I Y  L  G FK+ ++  G K    AL  G+K
Sbjct: 294 NGFCKRGEMDRAFDLFKVMEQRGIEPDLIAYSTLIDGYFKAGMLGMGHKLFSQALHKGVK 353

Query: 368 LITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYV 427
           L     V SST         I+++ + GD+  A  +++ +     +     Y  LIK   
Sbjct: 354 LDVV--VFSST---------IDVYVKSGDLATASVVYKRMLCQGISPNVVTYTILIKGLC 402

Query: 428 K-AKINDPNLLRRMILG-GARPDAETYSLL 455
           +  +I +   +   IL  G  P   TYS L
Sbjct: 403 QDGRIYEAFGMYGQILKRGMEPSIVTYSSL 432



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 36/122 (29%), Positives = 56/122 (45%), Gaps = 7/122 (5%)

Query: 307 YNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGM 366
           ++S I VY K+G +  AS + K M   G  PN +TY  L  G  +   + E F     GM
Sbjct: 359 FSSTIDVYVKSGDLATASVVYKRMLCQGISPNVVTYTILIKGLCQDGRIYEAF-----GM 413

Query: 367 KLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAY 426
                K  R   P + T  S+I+ F + G++ +   L+E++ K  Y     +Y  L+   
Sbjct: 414 YGQILK--RGMEPSIVTYSSLIDGFCKCGNLRSGFALYEDMIKMGYPPDVVIYGVLVDGL 471

Query: 427 VK 428
            K
Sbjct: 472 SK 473



 Score = 42.7 bits (99), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 78/409 (19%), Positives = 152/409 (37%), Gaps = 62/409 (15%)

Query: 33  INRLRKLQLNKRALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQGEKLFCCIPKDY 92
           IN   K     RA ++ + V+ +R   P  + YS L++   K   +  G KLF       
Sbjct: 293 INGFCKRGEMDRAFDLFK-VMEQRGIEPDLIAYSTLIDGYFKAGMLGMGHKLFS------ 345

Query: 93  QNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNI 152
                        L KGV                 +  +VF+  I +    G   T   +
Sbjct: 346 -----------QALHKGV----------------KLDVVVFSSTIDVYVKSGDLATASVV 378

Query: 153 LRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHA- 211
            ++M    ++P+V T+ IL+K    D  I     +Y  + +  +EP+ V+Y  L      
Sbjct: 379 YKRMLCQGISPNVVTYTILIKGLCQDGRIYEAFGMYGQILKRGMEPSIVTYSSLIDGFCK 438

Query: 212 VARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKD-----LERIWATVQEL-P 265
              L +    Y + ++     +        +++YG L  G       L  +  +V+ L  
Sbjct: 439 CGNLRSGFALYEDMIKMGYPPD--------VVIYGVLVDGLSKQGLMLHAMRFSVKMLGQ 490

Query: 266 NVRSKSYVL--AIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKA 323
           ++R    V    I+ + R+ +   A +++  M           + +V+ V    G +++A
Sbjct: 491 SIRLNVVVFNSLIDGWCRLNRFDEALKVFRLMGIYGIKPDVATFTTVMRVSIMEGRLEEA 550

Query: 324 SGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALE--LGMKLITTKKVRSSTPWL 381
             L   M   G +P+A+ Y           L++   K ++  +G++L    +    +  +
Sbjct: 551 LFLFFRMFKMGLEPDALAY---------CTLIDAFCKHMKPTIGLQLFDLMQRNKISADI 601

Query: 382 ETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAK 430
                +I +  +   + +A   F  L +         YNT+I  Y   +
Sbjct: 602 AVCNVVIHLLFKCHRIEDASKFFNNLIEGKMEPDIVTYNTMICGYCSLR 650



 Score = 42.0 bits (97), Expect = 0.75,   Method: Compositional matrix adjust.
 Identities = 60/299 (20%), Positives = 116/299 (38%), Gaps = 35/299 (11%)

Query: 162 APHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVA-E 220
           AP+V TF  L+        ++    ++  M++  +EP+ ++Y  L   +  A +  +  +
Sbjct: 283 APNVVTFCTLINGFCKRGEMDRAFDLFKVMEQRGIEPDLIAYSTLIDGYFKAGMLGMGHK 342

Query: 221 TYVEALEKSMTGNNW---STLDVLIILYGYLAKGKDLERIWATVQELPNVRSKSYVLAIE 277
            + +AL K +  +     ST+DV  +  G LA    + +        PNV   +Y + I+
Sbjct: 343 LFSQALHKGVKLDVVVFSSTIDVY-VKSGDLATASVVYKRMLCQGISPNV--VTYTILIK 399

Query: 278 AFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKP 337
              +  ++  A  ++ ++       +   Y+S+I  +CK G +     L ++M   G  P
Sbjct: 400 GLCQDGRIYEAFGMYGQILKRGMEPSIVTYSSLIDGFCKCGNLRSGFALYEDMIKMGYPP 459

Query: 338 NAITYRHLALGCFKSNLVEEG--FKALELG--------------------------MKLI 369
           + + Y  L  G  K  L+     F    LG                          +K+ 
Sbjct: 460 DVVIYGVLVDGLSKQGLMLHAMRFSVKMLGQSIRLNVVVFNSLIDGWCRLNRFDEALKVF 519

Query: 370 TTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVK 428
               +    P + T  +++ +   +G +  A  LF  + K         Y TLI A+ K
Sbjct: 520 RLMGIYGIKPDVATFTTVMRVSIMEGRLEEALFLFFRMFKMGLEPDALAYCTLIDAFCK 578


>gi|224065693|ref|XP_002301924.1| predicted protein [Populus trichocarpa]
 gi|222843650|gb|EEE81197.1| predicted protein [Populus trichocarpa]
          Length = 709

 Score = 87.8 bits (216), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 87/389 (22%), Positives = 176/389 (45%), Gaps = 18/389 (4%)

Query: 53  IRERPYRPKELDYSYLLEFTIKNHGISQG--EKLFCCIPKDY--QNELLYNNLVIACLDK 108
           +RE  Y    ++YS ++   +KN+  +    +K++  I +D    +  L+N++++     
Sbjct: 225 MREDGYPSDLVNYSLIIRSLMKNNRANSSILQKIYREIDRDKLEVDVQLWNDIIVGFAKA 284

Query: 109 GVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTF 168
           G +  +LE++  ++  G S+       +I    + GR +    I  +M+ + + P    +
Sbjct: 285 GDLDKALEFLGVVQGSGLSVKTATLVTVIWGLGNCGRTEEAEAIFEEMRDNGLQPRTRAY 344

Query: 169 HILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEK 228
           + L++       +     V S+M+RS V PNE +Y +L  A+  A  +  A   ++ +E 
Sbjct: 345 NALLRGYVKAGLLRDAEFVVSEMERSGVLPNEQTYSLLIDAYGNAERWESARIVLKEMEA 404

Query: 229 SMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPN--VRSKS--YVLAIEAFGRIAQ 284
           S    N        IL  Y  KG + ++ +  ++E+ +  VR     Y + I+ FG+   
Sbjct: 405 SNVQPNAYVFSR--ILASYRDKG-EWQKTFQVLREMEDSGVRPDRIFYNVLIDTFGKFNC 461

Query: 285 VSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRH 344
           +  A   +  M S      T  +N+++  +CK G  D+A  L +EM   G  P   T+ +
Sbjct: 462 LDHAMATFDRMLSEGIEPDTITWNTLVDCHCKAGKHDRAEELFEEMMEKGYLPCNTTF-N 520

Query: 345 LALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLF 404
           + +  F      +  K       L+T  + +   P   T  ++I+I+ + G   +A    
Sbjct: 521 IMINSFGDQERWDDVK------NLLTNMRSQGLLPNAVTYTTLIDIYGKSGRFDDAIECL 574

Query: 405 EELKKANYTKYTFVYNTLIKAYVKAKIND 433
           +++K A     + +YN L+ AY +  ++D
Sbjct: 575 DDMKAAGLKPSSTMYNALLNAYAQRGLSD 603



 Score = 72.8 bits (177), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 101/460 (21%), Positives = 198/460 (43%), Gaps = 47/460 (10%)

Query: 18  MREGFPVHRGEIFHSINRLRKLQLNKR----ALEVMEWVIRERPYRPKELDYSYLLEFTI 73
           + E + V  G ++HS+  L+ L  +      A  V+ W+ +        L +SY L ++I
Sbjct: 123 LAESYRVVPGPLWHSL--LKSLCTSSSSIPLAYAVVSWLQKH------NLCFSYELLYSI 174

Query: 74  KNHGISQGEKL---FCCIPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISY 130
             H + Q EKL   F    K     L YN L+ AC     I+ +L  + +MR  G+    
Sbjct: 175 LIHALGQSEKLYEAFLLSQKQNLTPLTYNALISACARNNDIEKALNLICRMREDGYPSDL 234

Query: 131 LVFNRLI--ILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVY 188
           + ++ +I  ++ ++      +  I R++  DK+   V  ++ ++   A   +++  ++  
Sbjct: 235 VNYSLIIRSLMKNNRANSSILQKIYREIDRDKLEVDVQLWNDIIVGFAKAGDLDKALEFL 294

Query: 189 SDMKRSEVEPNEVSYCILATAHAVARLYTVAET----YVEALEKSMTGNNWS--TLDVLI 242
             ++ S +         + TA  V  ++ +         EA+ + M  N     T     
Sbjct: 295 GVVQGSGLS--------VKTATLVTVIWGLGNCGRTEEAEAIFEEMRDNGLQPRTRAYNA 346

Query: 243 ILYGYLAKG--KDLERIWATVQE---LPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQS 297
           +L GY+  G  +D E + + ++    LPN   ++Y L I+A+G   +   A  +  EM++
Sbjct: 347 LLRGYVKAGLLRDAEFVVSEMERSGVLPN--EQTYSLLIDAYGNAERWESARIVLKEMEA 404

Query: 298 VKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEE 357
                    ++ +++ Y   G   K   +L+EM  +G +P+ I Y  L     K N ++ 
Sbjct: 405 SNVQPNAYVFSRILASYRDKGEWQKTFQVLREMEDSGVRPDRIFYNVLIDTFGKFNCLDH 464

Query: 358 GFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTF 417
                +   ++++      +  W     ++++   + G    AE LFEE+ +  Y     
Sbjct: 465 AMATFD---RMLSEGIEPDTITW----NTLVDCHCKAGKHDRAEELFEEMMEKGYLPCNT 517

Query: 418 VYNTLIKAYVKAKINDP--NLLRRMILGGARPDAETYSLL 455
            +N +I ++   +  D   NLL  M   G  P+A TY+ L
Sbjct: 518 TFNIMINSFGDQERWDDVKNLLTNMRSQGLLPNAVTYTTL 557



 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 72/353 (20%), Positives = 147/353 (41%), Gaps = 51/353 (14%)

Query: 118 MKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEAN 177
           +K+M       +  VF+R++      G  +    +LR+M+   V P    +++L+     
Sbjct: 399 LKEMEASNVQPNAYVFSRILASYRDKGEWQKTFQVLREMEDSGVRPDRIFYNVLIDTFGK 458

Query: 178 DHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAET-YVEALEKSMTGNNWS 236
            + ++  M  +  M    +EP+ +++  L   H  A  +  AE  + E +EK     N +
Sbjct: 459 FNCLDHAMATFDRMLSEGIEPDTITWNTLVDCHCKAGKHDRAEELFEEMMEKGYLPCN-T 517

Query: 237 TLDVLIILYGYLAKGKDLERIWATVQE---LPNVRSKSYVLAIEAFGRIAQVSRAEELWL 293
           T +++I  +G   +  D++ +   ++    LPN  + +Y   I+ +G+  +   A E   
Sbjct: 518 TFNIMINSFGDQERWDDVKNLLTNMRSQGLLPN--AVTYTTLIDIYGKSGRFDDAIECLD 575

Query: 294 EMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSN 353
           +M++     ++  YN++++ Y + G  D+A      M  +G KP+      LAL      
Sbjct: 576 DMKAAGLKPSSTMYNALLNAYAQRGLSDQAVSAFWAMRDDGLKPSL-----LALN----- 625

Query: 354 LVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYT 413
                                           S+I  F +      A  + + +K+ +  
Sbjct: 626 --------------------------------SLINAFGKDRRDVEAFVVLQYMKENDLK 653

Query: 414 KYTFVYNTLIKAYVKAKIND--PNLLRRMILGGARPDAETYSLLKLAEQFQKK 464
                Y TL+KA +  +  D  P++   MIL G  PD +  ++L+ A ++ K+
Sbjct: 654 PDVVTYTTLMKALILVEKFDKVPSVYEEMILSGCTPDRKARAMLRSALKYMKQ 706



 Score = 39.7 bits (91), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 58/285 (20%), Positives = 110/285 (38%), Gaps = 42/285 (14%)

Query: 59  RPKELDYSYLLE----FTIKNHGISQGEKLFC-CIPKDYQNELLYNNLVIACLDKGVIKL 113
           RP  + Y+ L++    F   +H ++  +++    I  D    + +N LV      G    
Sbjct: 443 RPDRIFYNVLIDTFGKFNCLDHAMATFDRMLSEGIEPD---TITWNTLVDCHCKAGKHDR 499

Query: 114 SLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMK 173
           + E  ++M   G+      FN +I       R   + N+L  M++  + P+  T+  L+ 
Sbjct: 500 AEELFEEMMEKGYLPCNTTFNIMINSFGDQERWDDVKNLLTNMRSQGLLPNAVTYTTLID 559

Query: 174 IEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGN 233
           I       +  ++   DMK + ++P+   Y  L  A+A   L   A +   A+       
Sbjct: 560 IYGKSGRFDDAIECLDDMKAAGLKPSSTMYNALLNAYAQRGLSDQAVSAFWAMRDDGLKP 619

Query: 234 NWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWL 293
           +   L+ LI  +G     +D+E  +  +Q +     K  V+                   
Sbjct: 620 SLLALNSLINAFG--KDRRDVE-AFVVLQYMKENDLKPDVVTYTTL-------------- 662

Query: 294 EMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPN 338
               +K L   E+++ V SVY             +EM ++GC P+
Sbjct: 663 ----MKALILVEKFDKVPSVY-------------EEMILSGCTPD 690


>gi|414588908|tpg|DAA39479.1| TPA: chloroplast RNA splicing4 [Zea mays]
          Length = 1438

 Score = 87.8 bits (216), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 79/349 (22%), Positives = 155/349 (44%), Gaps = 24/349 (6%)

Query: 121 MRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHN 180
           +R  G   +  VFN ++ + +  GR      +L  M    + P + +F+ L+   +    
Sbjct: 212 LRFAGEGATVQVFNAMMGVYARSGRFDDARQLLDTMHDRGIDPDLVSFNTLINARSKSGC 271

Query: 181 IEG--LMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTL 238
           +     + +  ++++S + P+ ++Y  L +A + +     A T  E +  S    +  T 
Sbjct: 272 LAAGVALDLLFEVRQSGLRPDVITYNTLISACSQSSNLEDAVTVFEDMIASECRPDLWTY 331

Query: 239 DVLIILYGYLAKGKDLERIWATVQE---LPNVRSKSYVLAIEAFGRIAQVSRAEELWLEM 295
           + ++ ++G   K ++ ER++  + E   +P+  + +Y   + AF +   V + E    ++
Sbjct: 332 NAMVSVHGRCGKAEEAERLFRELVEKGFMPD--AITYNSLLYAFAKEGNVDKVEHTCEQL 389

Query: 296 QSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLV 355
                 K    YN++I +Y K G +D A GL  EM   GC P+A+TY  +     K N +
Sbjct: 390 VKAGFKKNEITYNTMIHMYGKMGRLDLAVGLYDEMRAMGCTPDAVTYTVMIDSLGKMNRI 449

Query: 356 EEGFKALE----LGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKAN 411
            E  K LE     G+K           P L    ++I  +A+ G   +AEN F+ +  + 
Sbjct: 450 AEAGKVLEDMTDAGLK-----------PTLIAFSALICAYAKGGRRADAENTFDCMIASG 498

Query: 412 YTKYTFVYNTLIKAYVKAKINDPNLL--RRMILGGARPDAETYSLLKLA 458
                  Y  ++  + ++   +  L   R+M+    RPD + Y +L +A
Sbjct: 499 VKPDRLAYLVMLDVFARSGDTEKMLCLYRKMMNDNYRPDDDMYQVLLVA 547



 Score = 48.9 bits (115), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 68/284 (23%), Positives = 119/284 (41%), Gaps = 37/284 (13%)

Query: 206  LATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELP 265
            L  A+A + LY  A    + + K  TG   +   V  ++   +  G+ L+ ++  V+EL 
Sbjct: 786  LIHAYAESGLYEKARAVFDNMIK--TGPLPTVDSVNGMMRALIVDGR-LDELYVVVEELQ 842

Query: 266  NVR---SKSYVLAI-EAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFID 321
            ++    SKS VL + +AF +   V    +++  M++   L     Y S+IS+ C +    
Sbjct: 843  DMNFKISKSTVLLLLDAFAKAGDVFEVMKIYNGMKAAGYLPNMHLYRSMISLLCHHNRFR 902

Query: 322  KASGLLKEMSMNGCKP-----NAITYRHLALGCFKS------NLVEEGFKA--------- 361
                ++ EM   G KP     NA+   + A G F        +++E G +          
Sbjct: 903  DVELMIAEMEGAGFKPDLAILNALLNMYTAAGNFDRTTQVYRSILEAGLEPDEDTYNTLI 962

Query: 362  --------LELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYT 413
                     E G  L+     R  TP L++  S++   A+      A+ +FEE++  +Y 
Sbjct: 963  VMYCRSFRPEEGFTLLNEMGKRGLTPKLQSYKSLLAASAKAELREQADQIFEEMRSKSYQ 1022

Query: 414  KYTFVYNTLIKAYVKAKIND--PNLLRRMILGGARPDAETYSLL 455
                +Y+ ++K Y  A  +    NLL  M   G  P   T  +L
Sbjct: 1023 LNRSIYHMMMKIYRNAGNHSKAENLLAVMKEDGIEPTIATMHIL 1066



 Score = 44.7 bits (104), Expect = 0.097,   Method: Compositional matrix adjust.
 Identities = 60/311 (19%), Positives = 128/311 (41%), Gaps = 13/311 (4%)

Query: 59  RPKELDYSYLLEFTIKNHGISQGEKLFC-CIPKDYQ-NELLYNNLVIACLDKGVIKLSLE 116
           RP    Y+ ++    +     + E+LF   + K +  + + YN+L+ A   +G +     
Sbjct: 325 RPDLWTYNAMVSVHGRCGKAEEAERLFRELVEKGFMPDAITYNSLLYAFAKEGNVDKVEH 384

Query: 117 YMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEA 176
             +++   G   + + +N +I +    GR      +  +M+A    P   T+ +++    
Sbjct: 385 TCEQLVKAGFKKNEITYNTMIHMYGKMGRLDLAVGLYDEMRAMGCTPDAVTYTVMIDSLG 444

Query: 177 NDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWS 236
             + I    KV  DM  + ++P  +++  L  A+A       AE   + +  S  G    
Sbjct: 445 KMNRIAEAGKVLEDMTDAGLKPTLIAFSALICAYAKGGRRADAENTFDCMIAS--GVKPD 502

Query: 237 TLDVLIILYGYLAKGKDLERIWATVQELPNVRSKS----YVLAIEAFGRIAQVSRAEELW 292
            L  L++L    A+  D E++    +++ N   +     Y + + A  +  +    EE+ 
Sbjct: 503 RLAYLVML-DVFARSGDTEKMLCLYRKMMNDNYRPDDDMYQVLLVALAKEDKCEEIEEVI 561

Query: 293 LEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKS 352
            +M+ + ++        +I   C    + + + LLK+  + G KP+  + R +      +
Sbjct: 562 QDMELLCRMNLGIISTMLIKARC----VSQGAKLLKKACLQGYKPDIKSLRSIMNAYVMT 617

Query: 353 NLVEEGFKALE 363
              EEG   LE
Sbjct: 618 EKHEEGLSLLE 628



 Score = 40.8 bits (94), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 40/179 (22%), Positives = 69/179 (38%), Gaps = 30/179 (16%)

Query: 305  EQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALE- 363
            + YN++I +YC++   ++   LL EM   G  P   +Y+ L     K+ L E+  +  E 
Sbjct: 956  DTYNTLIVMYCRSFRPEEGFTLLNEMGKRGLTPKLQSYKSLLAASAKAELREQADQIFEE 1015

Query: 364  --------------LGMK-------------LITTKKVRSSTPWLETTLSIIEIFAEKGD 396
                          + MK             L+   K     P + T   ++  +   G 
Sbjct: 1016 MRSKSYQLNRSIYHMMMKIYRNAGNHSKAENLLAVMKEDGIEPTIATMHILMTSYGTAGQ 1075

Query: 397  VGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKI--NDPNLLRRMILGGARPDAETYS 453
               AEN+   LK ++    T  Y+T+  AY+K     +    L  M   G  PD + ++
Sbjct: 1076 PREAENVLNNLKSSSLEVSTLPYSTVFDAYLKNGDYNHGTTKLLEMKRDGVEPDHQVWT 1134


>gi|449462136|ref|XP_004148797.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g48810-like [Cucumis sativus]
          Length = 660

 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 91/412 (22%), Positives = 168/412 (40%), Gaps = 39/412 (9%)

Query: 60  PKELDYSYLLEFTIKNHGISQGEKLFC------CIPKDYQNELLYNNLVIACLDKGVIKL 113
           P    Y+ LL+   KN  +    KLF       C P    + + Y  +V +    G I  
Sbjct: 177 PNVFTYNILLKALCKNDRVDAAHKLFVEMSNKGCPP----DAVTYTTMVSSLCKAGKIDD 232

Query: 114 SLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMK 173
           + E   + +      S  V+N LI      GR +    +L +M  + V P+V ++  ++ 
Sbjct: 233 ARELAGRFKP-----SVPVYNALIDGMCKEGRIEVAIKLLGEMMDNGVDPNVVSYSCIIN 287

Query: 174 IEANDHNIEGLMKVYSDMKRSEVEPNEVSYC-ILATAHAVARLYTVAETYVEALEKSMTG 232
                 N+E    +++ M     + N  ++  ++       +LY   + +   ++     
Sbjct: 288 SLCVSGNVELAFALFAQMFLRGCDANIHTFTPLIKGCFMRGKLYEALDLWKLMIQDGCEP 347

Query: 233 N--NWSTLDVLIILYGYLAKGKDLERIWATVQE-----LPNVRSKSYVLAIEAFGRIAQV 285
           N   ++TL     ++G  + G   E +    Q      LPNV   +Y + I+ F +   +
Sbjct: 348 NVVAYNTL-----IHGLCSNGSLEEALQVCDQMQRSGCLPNV--TTYSILIDGFAKSGDL 400

Query: 286 SRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHL 345
             A E W  M S         Y  ++ V CKN   D+A+ L+++M++ GC PN +T+   
Sbjct: 401 VGASETWNRMISHGCRPNVVTYTCMVDVLCKNSMFDQANSLVEKMTLEGCTPNTMTFNT- 459

Query: 346 ALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFE 405
               F   L   G   +E  MKL+   +     P + T   +++          A  LF+
Sbjct: 460 ----FIKGLCGNG--RVEWAMKLLERMQGHGCLPNITTYNELLDALFRMNKYEEAFGLFQ 513

Query: 406 ELKKANYTKYTFVYNTLIKAYVKAKINDP--NLLRRMILGGARPDAETYSLL 455
           E++  N       YNT++  + +A +      L  + ++ G  PD+ TY+ +
Sbjct: 514 EIEARNLQPNLVTYNTVLYGFSRAGMMGEALQLFGKALVRGTAPDSITYNTM 565



 Score = 72.8 bits (177), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 85/406 (20%), Positives = 160/406 (39%), Gaps = 61/406 (15%)

Query: 52  VIRERPYRPKELDYSYLLEFTIKNHGISQGEKLFCCIPKDYQNELLYNNLVIACLDKGVI 111
           V+ ER  R  E+D    +   +K  GI+  E LF CI   Y+               G  
Sbjct: 79  VMIERLGRECEMDMVQYILQQMKMDGINCCEDLFICIINGYKR-------------VGSA 125

Query: 112 KLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHIL 171
           + +L+   ++   G   +  ++N L+    S  + + I  +   MK D + P+V T++IL
Sbjct: 126 EQALKMFYRIGEFGCKPTVRIYNHLLDALLSENKFQMINPLYTNMKKDGLIPNVFTYNIL 185

Query: 172 MKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMT 231
           +K    +  ++   K++ +M      P+ V+Y                 T V +L K+  
Sbjct: 186 LKALCKNDRVDAAHKLFVEMSNKGCPPDAVTY----------------TTMVSSLCKA-- 227

Query: 232 GNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEEL 291
                         G +   ++L   +      P+V    Y   I+   +  ++  A +L
Sbjct: 228 --------------GKIDDARELAGRFK-----PSV--PVYNALIDGMCKEGRIEVAIKL 266

Query: 292 WLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFK 351
             EM           Y+ +I+  C +G ++ A  L  +M + GC  N  T+  L  GCF 
Sbjct: 267 LGEMMDNGVDPNVVSYSCIINSLCVSGNVELAFALFAQMFLRGCDANIHTFTPLIKGCFM 326

Query: 352 SNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKAN 411
              +   ++AL+L   +I         P +    ++I      G +  A  + ++++++ 
Sbjct: 327 RGKL---YEALDLWKLMIQD----GCEPNVVAYNTLIHGLCSNGSLEEALQVCDQMQRSG 379

Query: 412 YTKYTFVYNTLIKAYVKAK--INDPNLLRRMILGGARPDAETYSLL 455
                  Y+ LI  + K+   +       RMI  G RP+  TY+ +
Sbjct: 380 CLPNVTTYSILIDGFAKSGDLVGASETWNRMISHGCRPNVVTYTCM 425



 Score = 41.2 bits (95), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 42/188 (22%), Positives = 76/188 (40%), Gaps = 12/188 (6%)

Query: 269 SKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLK 328
           + +Y + IE  GR  ++   + +  +M+        + +  +I+ Y + G  ++A  +  
Sbjct: 74  ASTYRVMIERLGRECEMDMVQYILQQMKMDGINCCEDLFICIINGYKRVGSAEQALKMFY 133

Query: 329 EMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSII 388
            +   GCKP    Y HL      + L E  F+ +     L T  K     P + T   ++
Sbjct: 134 RIGEFGCKPTVRIYNHL----LDALLSENKFQMIN---PLYTNMKKDGLIPNVFTYNILL 186

Query: 389 EIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKA-KINDPNLLRRMILGGARP 447
           +   +   V  A  LF E+           Y T++ +  KA KI+D     R + G  +P
Sbjct: 187 KALCKNDRVDAAHKLFVEMSNKGCPPDAVTYTTMVSSLCKAGKIDDA----RELAGRFKP 242

Query: 448 DAETYSLL 455
               Y+ L
Sbjct: 243 SVPVYNAL 250


>gi|356542147|ref|XP_003539532.1| PREDICTED: pentatricopeptide repeat-containing protein At2g20710,
           mitochondrial-like [Glycine max]
          Length = 483

 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 95/433 (21%), Positives = 190/433 (43%), Gaps = 18/433 (4%)

Query: 9   PVGSAFQSWMREGFPVHRGEIFHSINRLRKLQLNKRALEVMEWVIRERPYRPKELDYSYL 68
           PV    + W+ EG  V + ++ + + RL + +    AL+V+EW+  ER Y     + +  
Sbjct: 37  PVSPILKQWVEEGREVTKLQLENLVYRLTQSRRFTHALQVLEWMSNERNYELSPGNIAKQ 96

Query: 69  LEFTIKNHGISQGEKLFCCIPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSI 128
           +    K  G+ Q EK F  IP       +Y  L+    +   ++ +   +KK++ L    
Sbjct: 97  INLISKVRGLEQAEKYFRGIPDAKIEFKIYAALLRCYAEHKSVEEAEAVLKKIKELHPVN 156

Query: 129 SYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVY 188
                N ++ L +  G+ + +  ++++MK   +  +  T+ I +       +I+G+ K+ 
Sbjct: 157 ITACCNMMLELYAKKGKYEKLDRLMQEMKEKDIC-NAGTYTIRLNAYVIATDIKGMEKLL 215

Query: 189 SDMKRSEVEPNEVS--YCILATAHAVARLYTVAETYVEALEKSMTGNNWST----LDVLI 242
             M   EV+P      Y  +  A+   +++   E     L+KS       T     + + 
Sbjct: 216 MQM---EVDPMATVDWYTYMTAANGYRKVHNF-EKVAAMLKKSEHVARGKTKRLAYESIQ 271

Query: 243 ILYGYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLK 302
            +Y  +    ++ R+W      P   +KSY+  + +  ++  +  AE++  E +SV +  
Sbjct: 272 TMYAIIGNKDEVHRLWNMCTS-PKKPNKSYIRMLSSLVKLDDIDGAEKILEEWESVHENF 330

Query: 303 ATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKAL 362
                N +IS YCK G  DKA   ++ +   G   +  T+  LA G    N +E   +A 
Sbjct: 331 DVRIPNLMISAYCKWGQFDKAEAYIRRLLDGGKHLDGRTWDRLACGYNAGNDMENAVQA- 389

Query: 363 ELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTL 422
              MK   +  +    P   T ++ ++   EKGD+  A  + +   + ++   T  Y+ L
Sbjct: 390 ---MKKAVSTNLAGRRPDPFTLVACVKYLKEKGDLDLALEILKLCIENSHISVT-SYDGL 445

Query: 423 IKAYVKAKINDPN 435
           + +YV+++   P+
Sbjct: 446 V-SYVRSETETPD 457


>gi|302791141|ref|XP_002977337.1| hypothetical protein SELMODRAFT_107186 [Selaginella moellendorffii]
 gi|300154707|gb|EFJ21341.1| hypothetical protein SELMODRAFT_107186 [Selaginella moellendorffii]
          Length = 636

 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 89/414 (21%), Positives = 164/414 (39%), Gaps = 24/414 (5%)

Query: 53  IRERPYRPKELDYSYLLEFTIKNHGISQGEKLF------CCIPKDYQNELLYNNLVIACL 106
           ++E    P  + YS ++    +   +    KLF       C+P    N + YN L+    
Sbjct: 68  MKESGLAPNVVTYSTVIHGFCRQTKVDTAYKLFRQMVENGCMP----NLVTYNTLLSGLC 123

Query: 107 DKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVS 166
             G++  + E + +MR  G       ++ L+      G+      +          P V 
Sbjct: 124 RNGLMDEAYELLDEMRERGLQPDKFSYDTLMAGLCKTGKIDMALKVFEDNSNGDCPPDVV 183

Query: 167 TFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEAL 226
            +  L+        ++   K++  M+ +  EP+ V++  L            A+  +E +
Sbjct: 184 AYSTLIAGLCKTGRLDEACKLFEKMRENSCEPDVVTFTALMDGLCKGDRLQEAQQVLETM 243

Query: 227 EKSMTGNNWSTLDVLIILYGYLAKGKDLERIW--ATVQEL-PNVRSKSYVLAIEAFGRIA 283
           E      N  T   LI       + +D + ++    V+ + PNV   +Y   I  F    
Sbjct: 244 EDRNCTPNVITYSSLIDGLCKTGQVRDAQEVFKRMIVRGIEPNV--VTYNSLIHGFCMTN 301

Query: 284 QVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYR 343
            V  A  L  EM +   L     YN++I   CK G   +A+ L  +M    C P+ ITY 
Sbjct: 302 GVDSALLLMEEMTATGCLPDIITYNTLIDGLCKTGRAPEANRLFGDMKAKFCNPDVITYS 361

Query: 344 HLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENL 403
            L  G  K        + +++   L      ++  P + T  +++E +   G V +AE L
Sbjct: 362 CLIGGFCK-------LERIDMARTLFDDMLKQAVLPDVVTFSTLVEGYCNAGLVDDAERL 414

Query: 404 FEELKKANYTKYTFVYNTLIKAYVKAK--INDPNLLRRMILGGARPDAETYSLL 455
            EE+  ++ +   + Y +L+  + K    +    +L+RM   G +P+  TY+ L
Sbjct: 415 LEEMVASDCSPDVYTYTSLVDGFCKVGRMVEARRVLKRMAKRGCQPNVVTYTAL 468



 Score = 81.6 bits (200), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 81/382 (21%), Positives = 146/382 (38%), Gaps = 18/382 (4%)

Query: 53  IRERPYRPKELDYSYLLEFTIKNHGISQGEKLFCCIPKDYQNE------LLYNNLVIACL 106
           +RER  +P +  Y  L+    K   I    K+F    +D  N       + Y+ L+    
Sbjct: 138 MRERGLQPDKFSYDTLMAGLCKTGKIDMALKVF----EDNSNGDCPPDVVAYSTLIAGLC 193

Query: 107 DKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVS 166
             G +  + +  +KMR        + F  L+       R +    +L  M+     P+V 
Sbjct: 194 KTGRLDEACKLFEKMRENSCEPDVVTFTALMDGLCKGDRLQEAQQVLETMEDRNCTPNVI 253

Query: 167 TFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEAL 226
           T+  L+        +    +V+  M    +EPN V+Y  L     +      A   +E +
Sbjct: 254 TYSSLIDGLCKTGQVRDAQEVFKRMIVRGIEPNVVTYNSLIHGFCMTNGVDSALLLMEEM 313

Query: 227 EKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQ-ELPNVRSKSYVLAIEAFGRIAQV 285
             +    +  T + LI       +  +  R++  ++ +  N    +Y   I  F ++ ++
Sbjct: 314 TATGCLPDIITYNTLIDGLCKTGRAPEANRLFGDMKAKFCNPDVITYSCLIGGFCKLERI 373

Query: 286 SRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHL 345
             A  L+ +M     L     +++++  YC  G +D A  LL+EM  + C P+  TY  L
Sbjct: 374 DMARTLFDDMLKQAVLPDVVTFSTLVEGYCNAGLVDDAERLLEEMVASDCSPDVYTYTSL 433

Query: 346 ALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFE 405
             G  K   + E  + L+   K       R   P + T  ++I+ F   G    A  L E
Sbjct: 434 VDGFCKVGRMVEARRVLKRMAK-------RGCQPNVVTYTALIDAFCRAGKPTVAYKLLE 486

Query: 406 ELKKANYTKYTFVYNTLIKAYV 427
           E+           Y +LI  + 
Sbjct: 487 EMVGNGVQPNVITYRSLIGGFC 508



 Score = 79.0 bits (193), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 98/421 (23%), Positives = 167/421 (39%), Gaps = 51/421 (12%)

Query: 38  KLQLNKRALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQGEKLF--CCIPKDYQNE 95
           +LQ  ++ LE ME    +R   P  + YS L++   K   +   +++F    +     N 
Sbjct: 232 RLQEAQQVLETME----DRNCTPNVITYSSLIDGLCKTGQVRDAQEVFKRMIVRGIEPNV 287

Query: 96  LLYNNLVIA-CLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILR 154
           + YN+L+   C+  GV   +L  M++M   G     + +N LI      GR      +  
Sbjct: 288 VTYNSLIHGFCMTNGVDS-ALLLMEEMTATGCLPDIITYNTLIDGLCKTGRAPEANRLFG 346

Query: 155 QMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVAR 214
            MKA    P V T+  L+        I+    ++ DM +  V P+ V++  L   +  A 
Sbjct: 347 DMKAKFCNPDVITYSCLIGGFCKLERIDMARTLFDDMLKQAVLPDVVTFSTLVEGYCNAG 406

Query: 215 LYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSKSYVL 274
           L   AE  +E     M  ++ S                            P+V +  Y  
Sbjct: 407 LVDDAERLLE----EMVASDCS----------------------------PDVYT--YTS 432

Query: 275 AIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNG 334
            ++ F ++ ++  A  +   M           Y ++I  +C+ G    A  LL+EM  NG
Sbjct: 433 LVDGFCKVGRMVEARRVLKRMAKRGCQPNVVTYTALIDAFCRAGKPTVAYKLLEEMVGNG 492

Query: 335 CKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEK 394
            +PN ITYR L  G   +  +EE  K LE   +L   +  ++          +++     
Sbjct: 493 VQPNVITYRSLIGGFCGTGDLEEARKMLE---RLERDENCKADMFAYRV---MMDGLCRT 546

Query: 395 GDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAK--INDPNLLRRMILG-GARPDAET 451
           G +  A  L E +K++       +Y  LI+   + K       +L  M L   +RP+AE 
Sbjct: 547 GRMSAALELLEAIKQSGTPPRHDIYVALIRGLCQGKELGKAMEVLEEMTLSRKSRPNAEA 606

Query: 452 Y 452
           Y
Sbjct: 607 Y 607



 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 72/310 (23%), Positives = 132/310 (42%), Gaps = 22/310 (7%)

Query: 155 QMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVAR 214
           +MK     P+  T+++L+      H +     +  +MK S + PN V+Y  +   H   R
Sbjct: 32  KMKKKGTVPNEWTYNVLINGFCKVHKVHRAYLLLKEMKESGLAPNVVTYSTV--IHGFCR 89

Query: 215 LYTVAETYVEALEKSMTGNNW-STLDVLIILYGYLAKGKDLERIWATVQEL------PNV 267
              V   Y   L + M  N     L     L   L +   ++  +  + E+      P+ 
Sbjct: 90  QTKVDTAY--KLFRQMVENGCMPNLVTYNTLLSGLCRNGLMDEAYELLDEMRERGLQPDK 147

Query: 268 RSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLL 327
            S   ++A     +  ++  A +++ +  +         Y+++I+  CK G +D+A  L 
Sbjct: 148 FSYDTLMA--GLCKTGKIDMALKVFEDNSNGDCPPDVVAYSTLIAGLCKTGRLDEACKLF 205

Query: 328 KEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSI 387
           ++M  N C+P+ +T+  L  G  K + ++E  + LE       T + R+ TP + T  S+
Sbjct: 206 EKMRENSCEPDVVTFTALMDGLCKGDRLQEAQQVLE-------TMEDRNCTPNVITYSSL 258

Query: 388 IEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKINDPNLL--RRMILGGA 445
           I+   + G V +A+ +F+ +           YN+LI  +      D  LL    M   G 
Sbjct: 259 IDGLCKTGQVRDAQEVFKRMIVRGIEPNVVTYNSLIHGFCMTNGVDSALLLMEEMTATGC 318

Query: 446 RPDAETYSLL 455
            PD  TY+ L
Sbjct: 319 LPDIITYNTL 328



 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 72/297 (24%), Positives = 126/297 (42%), Gaps = 41/297 (13%)

Query: 195 EVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDL 254
           E E N +++ I+      A     A TY   ++K  T  N  T +VLI  +  + K   +
Sbjct: 2   ECEKNVITWTIMIDGLCKANRLPEATTYFAKMKKKGTVPNEWTYNVLINGFCKVHK---V 58

Query: 255 ERIWATVQEL------PNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYN 308
            R +  ++E+      PNV + S V  I  F R  +V  A +L+ +M     +     YN
Sbjct: 59  HRAYLLLKEMKESGLAPNVVTYSTV--IHGFCRQTKVDTAYKLFRQMVENGCMPNLVTYN 116

Query: 309 SVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKA------- 361
           +++S  C+NG +D+A  LL EM   G +P+  +Y  L  G  K+  ++   K        
Sbjct: 117 TLLSGLCRNGLMDEAYELLDEMRERGLQPDKFSYDTLMAGLCKTGKIDMALKVFEDNSNG 176

Query: 362 ---------------------LELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNA 400
                                L+   KL    +  S  P + T  ++++   +   +  A
Sbjct: 177 DCPPDVVAYSTLIAGLCKTGRLDEACKLFEKMRENSCEPDVVTFTALMDGLCKGDRLQEA 236

Query: 401 ENLFEELKKANYTKYTFVYNTLIKAYVK-AKINDPN-LLRRMILGGARPDAETYSLL 455
           + + E ++  N T     Y++LI    K  ++ D   + +RMI+ G  P+  TY+ L
Sbjct: 237 QQVLETMEDRNCTPNVITYSSLIDGLCKTGQVRDAQEVFKRMIVRGIEPNVVTYNSL 293


>gi|147771903|emb|CAN75708.1| hypothetical protein VITISV_031421 [Vitis vinifera]
          Length = 1313

 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 79/334 (23%), Positives = 145/334 (43%), Gaps = 17/334 (5%)

Query: 98  YNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMK 157
           YN L+      G +K + +   +M  LG ++  + FN +I    S G       +L +M+
Sbjct: 653 YNTLIDLYGKAGRLKDAADVFAEMLKLGVAMDTITFNTMIYTCGSHGHLSEAETLLTEME 712

Query: 158 ADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYT 217
              ++P   T++I + + A+  NI+  +K Y  ++   + P+ V++   A  H +     
Sbjct: 713 ERGISPDTKTYNIFLSLYADGGNIDAALKCYRKIREVGLFPDVVTH--RAVLHVLCERNM 770

Query: 218 VA--ETYVEALEKSMTGNNWSTLDVLIILY---GYLAKGKDLERIWATVQELPNVRSKSY 272
           V   ET +  +++S    +  ++ V+I +Y   G L K K              + S++ 
Sbjct: 771 VGEVETVIAEMKRSRVRVDEHSIPVVIKMYVNEGLLDKAKIFL---EEHLLEDELSSRTR 827

Query: 273 VLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSM 332
           V  I+A+      + AE +++  + + Q K   +YN ++  Y K    DKA  L K M  
Sbjct: 828 VAIIDAYAEKGLWAEAENVFIGKRDLGQKKDVVEYNVMVKAYGKAKLYDKAFSLFKGMRN 887

Query: 333 NGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFA 392
           +G  PN  TY  L       +LV+E    L    K+          P   T  ++I  +A
Sbjct: 888 HGTWPNESTYNSLIQMFSGGDLVDEARDILAEMQKM-------GFKPQCLTFSAVIACYA 940

Query: 393 EKGDVGNAENLFEELKKANYTKYTFVYNTLIKAY 426
             G + +A  ++EE+ +        VY +LI  +
Sbjct: 941 RLGRLPDAVGVYEEMVRLGVKPNEVVYGSLINGF 974



 Score = 71.2 bits (173), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 101/452 (22%), Positives = 183/452 (40%), Gaps = 60/452 (13%)

Query: 43  KRALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQGEKLFCCIPKDYQNELL----- 97
           +R L V EW+  +  Y P  + Y+ +L    +     + ++L  C  +  +N +L     
Sbjct: 470 ERVLRVFEWIKSQEDYVPNVIHYNVVLRVLGRAQ---KWDELRLCWIEMAKNGVLPTNNT 526

Query: 98  YNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMK 157
           Y  LV      G++K +L ++K M++ G      VF   + +N       T+  +L+   
Sbjct: 527 YGMLVDVYGKAGLVKEALLWIKHMKLRG------VFPDEVTMN-------TVVRVLKDAG 573

Query: 158 ADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNE---VSYCILATAHAVAR 214
               A        + K+E  D ++E +     ++  + V            +     ++ 
Sbjct: 574 EFDWADRFYRDWCVGKVELGDFDLESVADSDDEIGSAPVSLKHFLSTELFKIGGRRPISN 633

Query: 215 LYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELP-NVRSKSYV 273
           +   + T     +  +T    +T + LI LYG   + KD   ++A + +L   + + ++ 
Sbjct: 634 IMDSSNTDGSRHKPRLT----ATYNTLIDLYGKAGRLKDAADVFAEMLKLGVAMDTITFN 689

Query: 274 LAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMN 333
             I   G    +S AE L  EM+       T+ YN  +S+Y   G ID A    +++   
Sbjct: 690 TMIYTCGSHGHLSEAETLLTEMEERGISPDTKTYNIFLSLYADGGNIDAALKCYRKIREV 749

Query: 334 GCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWL------------ 381
           G  P+ +T+R +     + N+V E  + +   MK    +    S P +            
Sbjct: 750 GLFPDVVTHRAVLHVLCERNMVGE-VETVIAEMKRSRVRVDEHSIPVVIKMYVNEGLLDK 808

Query: 382 ----------------ETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKA 425
                            T ++II+ +AEKG    AEN+F   +     K    YN ++KA
Sbjct: 809 AKIFLEEHLLEDELSSRTRVAIIDAYAEKGLWAEAENVFIGKRDLGQKKDVVEYNVMVKA 868

Query: 426 YVKAKINDP--NLLRRMILGGARPDAETYSLL 455
           Y KAK+ D   +L + M   G  P+  TY+ L
Sbjct: 869 YGKAKLYDKAFSLFKGMRNHGTWPNESTYNSL 900



 Score = 60.1 bits (144), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 81/409 (19%), Positives = 157/409 (38%), Gaps = 25/409 (6%)

Query: 47   EVMEWVIRERPY-RPKELDYSYLLEFTIKNHGISQGEKLFCCIPKDYQNELLYNNLVIAC 105
            +V+E+ +  + Y + K  D ++ L   ++NHG              + NE  YN+L+   
Sbjct: 858  DVVEYNVMVKAYGKAKLYDKAFSLFKGMRNHGT-------------WPNESTYNSLIQMF 904

Query: 106  LDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHV 165
                ++  + + + +M+ +G     L F+ +I   +  GR      +  +M    V P+ 
Sbjct: 905  SGGDLVDEARDILAEMQKMGFKPQCLTFSAVIACYARLGRLPDAVGVYEEMVRLGVKPNE 964

Query: 166  STFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEA 225
              +  L+   +   N+E  +  +  M    +  N++    L  A++       A+T  E 
Sbjct: 965  VVYGSLINGFSETGNVEEALCYFRKMDEFGISANQIVLTSLIKAYSKVGCLEGAKTLYEG 1024

Query: 226  LEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQV 285
            ++    G +    + +I LY  L    + + I+  +++  +    S+   +  +  +  +
Sbjct: 1025 MKDLEGGPDIVASNSMINLYADLGLVSEAKLIFDDLRQKGSADGVSFATMMYLYKNLGML 1084

Query: 286  SRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHL 345
              A ++  EM+    L+    +N V++ Y  NG +     LL EM      P+  T++ +
Sbjct: 1085 DEAIDVADEMKQSGFLRDCASFNKVMACYATNGQLSACGELLHEMISRRILPDTGTFKVM 1144

Query: 346  ALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFE 405
                 K  L  E    LE           +   P+    + I  +F+  G    A    E
Sbjct: 1145 FTVLKKGGLPTEAVTQLE--------SSYQEGKPYARQAV-ITSVFSTVGLHAFALESCE 1195

Query: 406  ELKKANYTKYTFVYNTLIKAYVKAKINDPNL--LRRMILGGARPDAETY 452
                A     +  YN  I AY  +   D  L    +M   G  PD  TY
Sbjct: 1196 TFLNAEVDLDSSFYNVAIYAYGASGSIDKALKMFMKMQDEGLEPDLVTY 1244



 Score = 40.8 bits (94), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 59/301 (19%), Positives = 124/301 (41%), Gaps = 36/301 (11%)

Query: 94   NELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNIL 153
            NE++Y +L+    + G ++ +L Y +KM   G S + +V   LI   S  G  +    + 
Sbjct: 963  NEVVYGSLINGFSETGNVEEALCYFRKMDEFGISANQIVLTSLIKAYSKVGCLEGAKTLY 1022

Query: 154  RQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVA 213
              MK  +  P +   + ++ + A+   +     ++ D+ R +   + VS+  +   +   
Sbjct: 1023 EGMKDLEGGPDIVASNSMINLYADLGLVSEAKLIFDDL-RQKGSADGVSFATMMYLYKNL 1081

Query: 214  RLYTVAETYVEALEKSMTGNNWSTLDVLIILY---GYLAKGKDLERIWATVQELPNVRSK 270
             +   A    + +++S    + ++ + ++  Y   G L+   +L     + + LP+  + 
Sbjct: 1082 GMLDEAIDVADEMKQSGFLRDCASFNKVMACYATNGQLSACGELLHEMISRRILPDTGTF 1141

Query: 271  SYVLAIEAFGRIAQ--VSRAEELWLEMQSVKQ-----------------LKATEQ----- 306
              +  +   G +    V++ E  + E +   +                 L++ E      
Sbjct: 1142 KVMFTVLKKGGLPTEAVTQLESSYQEGKPYARQAVITSVFSTVGLHAFALESCETFLNAE 1201

Query: 307  -------YNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGF 359
                   YN  I  Y  +G IDKA  +  +M   G +P+ +TY +LA GC+    + EG 
Sbjct: 1202 VDLDSSFYNVAIYAYGASGSIDKALKMFMKMQDEGLEPDLVTYINLA-GCYGKAGMLEGL 1260

Query: 360  K 360
            K
Sbjct: 1261 K 1261


>gi|359473390|ref|XP_002268680.2| PREDICTED: pentatricopeptide repeat-containing protein At1g05670,
           mitochondrial-like [Vitis vinifera]
          Length = 748

 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 86/377 (22%), Positives = 168/377 (44%), Gaps = 24/377 (6%)

Query: 87  CIPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRR 146
           CIP    + + Y+ ++      G ++  L+ +++M++ G   +   +N +I+L    G+ 
Sbjct: 284 CIP----DVISYSTVINGYCQVGELQRVLKLIEEMQIKGLKPNPYTYNGVILLLCKTGKV 339

Query: 147 KTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSY-CI 205
                +LR+M ++ +AP    +  L+       N+    +++ +M++ ++ P+ ++Y  +
Sbjct: 340 AEAERVLREMISEGIAPDGVIYTTLIDGFCKLGNVSSAYRLFDEMQKRKISPDFITYTAV 399

Query: 206 LATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQEL- 264
           +       R+    + + E + K +  +    +    ++ GY  +GK  E      Q L 
Sbjct: 400 ICGLCQTGRVMEADKLFHEMVCKRLEPDE---VTYTALIDGYCKEGKMKEAFSLHNQMLQ 456

Query: 265 ----PNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFI 320
               PN+   +Y    +   +  +V  A EL  EM           YNS+++  CK G I
Sbjct: 457 MGLTPNI--VTYTALADGLCKCGEVDTANELLHEMCRKGLELNIYTYNSLVNGLCKAGNI 514

Query: 321 DKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPW 380
           D+A  L+K+M + G  P+A+TY  L     KS    E  +A EL  +++     R   P 
Sbjct: 515 DQAVKLMKDMEVAGFHPDAVTYTTLMDAYCKS---REMVRAHELLRQMLD----RELQPT 567

Query: 381 LETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAY-VKAKIN-DPNLLR 438
           + T   ++  F   G + + E L + + +         YN+LIK Y ++  +     + R
Sbjct: 568 VVTFNVLMNGFCMSGMLEDGEKLLKWMLEKGIMPNATTYNSLIKQYCIRNNMRATTEIYR 627

Query: 439 RMILGGARPDAETYSLL 455
            M   G  PD  TY++L
Sbjct: 628 GMCAKGVVPDGNTYNIL 644



 Score = 63.2 bits (152), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 52/200 (26%), Positives = 91/200 (45%), Gaps = 15/200 (7%)

Query: 263 ELPNV----RSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNG 318
           E P V     + SY +   +  ++ +V  A +L L+M+    +     Y++VI+ YC+ G
Sbjct: 243 EFPEVGVCWNTASYNIITHSLCQLGRVVEAHQLLLQMELRGCIPDVISYSTVINGYCQVG 302

Query: 319 FIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKAL-ELGMKLITTKKVRSS 377
            + +   L++EM + G KPN  TY  + L   K+  V E  + L E+  + I    V  +
Sbjct: 303 ELQRVLKLIEEMQIKGLKPNPYTYNGVILLLCKTGKVAEAERVLREMISEGIAPDGVIYT 362

Query: 378 TPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAK--INDPN 435
           T        +I+ F + G+V +A  LF+E++K   +     Y  +I    +    +    
Sbjct: 363 T--------LIDGFCKLGNVSSAYRLFDEMQKRKISPDFITYTAVICGLCQTGRVMEADK 414

Query: 436 LLRRMILGGARPDAETYSLL 455
           L   M+     PD  TY+ L
Sbjct: 415 LFHEMVCKRLEPDEVTYTAL 434



 Score = 52.0 bits (123), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 71/367 (19%), Positives = 146/367 (39%), Gaps = 18/367 (4%)

Query: 96  LLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQ 155
           ++Y  L+      G +  +     +M+    S  ++ +  +I      GR      +  +
Sbjct: 359 VIYTTLIDGFCKLGNVSSAYRLFDEMQKRKISPDFITYTAVICGLCQTGRVMEADKLFHE 418

Query: 156 MKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHA-VAR 214
           M   ++ P   T+  L+     +  ++    +++ M +  + PN V+Y  LA        
Sbjct: 419 MVCKRLEPDEVTYTALIDGYCKEGKMKEAFSLHNQMLQMGLTPNIVTYTALADGLCKCGE 478

Query: 215 LYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELP----NVRSK 270
           + T  E   E   K +  N + T + L+     L K  ++++    ++++     +  + 
Sbjct: 479 VDTANELLHEMCRKGLELNIY-TYNSLV---NGLCKAGNIDQAVKLMKDMEVAGFHPDAV 534

Query: 271 SYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEM 330
           +Y   ++A+ +  ++ RA EL  +M   +       +N +++ +C +G ++    LLK M
Sbjct: 535 TYTTLMDAYCKSREMVRAHELLRQMLDRELQPTVVTFNVLMNGFCMSGMLEDGEKLLKWM 594

Query: 331 SMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEI 390
              G  PNA TY  L     K   +    +A     + +  K V    P   T   +I+ 
Sbjct: 595 LEKGIMPNATTYNSL----IKQYCIRNNMRATTEIYRGMCAKGV---VPDGNTYNILIKG 647

Query: 391 FAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAK--INDPNLLRRMILGGARPD 448
             +  ++  A  L  ++    +      YN LIK + K K  +    L  +M   G   D
Sbjct: 648 HCKARNMKEAWFLHRDMVGKGFNLTVSSYNALIKGFYKRKKFLEARELFEQMRREGLVAD 707

Query: 449 AETYSLL 455
            E Y++ 
Sbjct: 708 REIYNIF 714



 Score = 48.5 bits (114), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 35/141 (24%), Positives = 61/141 (43%), Gaps = 7/141 (4%)

Query: 288 AEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLAL 347
           A ++++E   V     T  YN +    C+ G + +A  LL +M + GC P+ I+Y  +  
Sbjct: 237 ALKVFVEFPEVGVCWNTASYNIITHSLCQLGRVVEAHQLLLQMELRGCIPDVISYSTVIN 296

Query: 348 GCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEEL 407
           G  +          L+  +KLI   +++   P   T   +I +  + G V  AE +  E+
Sbjct: 297 GYCQVG-------ELQRVLKLIEEMQIKGLKPNPYTYNGVILLLCKTGKVAEAERVLREM 349

Query: 408 KKANYTKYTFVYNTLIKAYVK 428
                     +Y TLI  + K
Sbjct: 350 ISEGIAPDGVIYTTLIDGFCK 370


>gi|297737146|emb|CBI26347.3| unnamed protein product [Vitis vinifera]
          Length = 862

 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 101/429 (23%), Positives = 186/429 (43%), Gaps = 32/429 (7%)

Query: 47  EVMEWVIR--ERPYRPKELDYSYLLEFTIKNHGISQGEKLF-------CCIPKDYQNELL 97
           E + W+ R  ++   P E+    +++   K     + E+ F          P    +   
Sbjct: 249 EALHWLDRMNKQGMEPDEVTMGVVVQTYKKAGEFKKAEQFFKNWSLESASQPHVCLSSYT 308

Query: 98  YNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMK 157
           YN L+      G ++ + +    M   G   + + FN +I +  + G+ +   +++++M+
Sbjct: 309 YNTLIDTYGKAGQLREASDTFAWMLREGIIPNTVTFNTMIHICGNHGQLEEAASLMQKME 368

Query: 158 ADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYT 217
             +  P   T++IL+ + A  +NI+     +  MK + +EP+ VSY  L  A ++  L  
Sbjct: 369 ELRCPPDTRTYNILISLHAKHNNIDRAASYFKKMKEARLEPDLVSYRTLLYAFSIRHLVG 428

Query: 218 VAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQEL---PNVRSKSYVL 274
            AE  V  +++     +  T   L  +Y    +   L++ W   +      N+ S+ Y  
Sbjct: 429 EAEILVSEMDERGLEIDEFTQSALTRMY---IEAGMLKKSWLWFRRFHLEGNMSSECYSA 485

Query: 275 AIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNG 334
            I+A+G    +  AE+ +L  +  ++L   E +N +I  Y  +   +KA  L+  M  +G
Sbjct: 486 NIDAYGERGHILEAEKAFLCCKESRKLSVLE-FNVMIKAYGISNRYEKACQLIDSMENHG 544

Query: 335 CKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEK 394
             P+  +Y  L      ++L     KA    MK+  T+ V    P+     ++I  F + 
Sbjct: 545 VLPDKFSYNSLIQILASADLPH---KAKFYLMKMQETQLVSDCIPY----CAVISSFIKL 597

Query: 395 GDVGNAENLFEELKKANYTKYTFVYNTLIKAY-----VKAKINDPNLLRRMILGGARPDA 449
           G +  AE LF+E+   N      VY  LI A+     V+  +N  N LR     G   +A
Sbjct: 598 GQLEMAEGLFKEMIGYNVQPDVVVYGILINAFADVGNVREAVNYVNALRN---AGLPMNA 654

Query: 450 ETY-SLLKL 457
             Y SL+KL
Sbjct: 655 VIYNSLIKL 663



 Score = 62.8 bits (151), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 74/337 (21%), Positives = 145/337 (43%), Gaps = 23/337 (6%)

Query: 68  LLEFT--IKNHGISQGEKLFCCIPKDYQN------ELLYNNLV--IACLD-KGVIKLSLE 116
           +LEF   IK +GIS   +  C +    +N      +  YN+L+  +A  D     K  L 
Sbjct: 514 VLEFNVMIKAYGISNRYEKACQLIDSMENHGVLPDKFSYNSLIQILASADLPHKAKFYLM 573

Query: 117 YMKKMRVLGHSISYL-VFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIE 175
            M++ +++   I Y  V +  I L    G+ +    + ++M    V P V  + IL+   
Sbjct: 574 KMQETQLVSDCIPYCAVISSFIKL----GQLEMAEGLFKEMIGYNVQPDVVVYGILINAF 629

Query: 176 ANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNW 235
           A+  N+   +   + ++ + +  N V Y  L   +        A+   + L+ S  G + 
Sbjct: 630 ADVGNVREAVNYVNALRNAGLPMNAVIYNSLIKLYTKVGYLEEAQEAYKMLQASEVGPDV 689

Query: 236 STLDVLIILYGYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEM 295
            + + +I LY   +  K  E I+ +++   +    S+ + +  + RI ++  A ++  +M
Sbjct: 690 YSSNCMIDLYSERSMVKQAEEIFESLKRKGDANEFSFAMMLCMYKRIGKLKEAFQIVQKM 749

Query: 296 QSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLV 355
           + +  +     YN+V+  Y  +G    A G  KEM     +P+  T++ L +   K  + 
Sbjct: 750 RELGLVTDLLSYNNVLGFYAMDGRFKDAVGTFKEMIEAAIQPDDCTFKSLGVVLVKCGIP 809

Query: 356 EEGFKALELGMKLITTKKVRSS--TPWLETTLSIIEI 390
           ++    LE+     T KK   S    W     S++E+
Sbjct: 810 KQAVGKLEM-----TRKKDPQSGLQAWASILFSVVEV 841



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 74/344 (21%), Positives = 141/344 (40%), Gaps = 40/344 (11%)

Query: 149 IPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILAT 208
           + ++  +M +  + P  ST+  L+ + +     E  +     M +  +EP+EV+  ++  
Sbjct: 215 VESLWDEMMSRGITPVNSTYGTLIDVYSKGGLTEEALHWLDRMNKQGMEPDEVTMGVVVQ 274

Query: 209 AHAVARLYTVAETY-----VEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQE 263
            +  A  +  AE +     +E+  +     +  T + LI  YG   + ++    +A +  
Sbjct: 275 TYKKAGEFKKAEQFFKNWSLESASQPHVCLSSYTYNTLIDTYGKAGQLREASDTFAWMLR 334

Query: 264 ---LPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFI 320
              +PN  + ++   I   G   Q+  A  L  +M+ ++    T  YN +IS++ K+  I
Sbjct: 335 EGIIPN--TVTFNTMIHICGNHGQLEEAASLMQKMEELRCPPDTRTYNILISLHAKHNNI 392

Query: 321 DKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEG----------------FKALEL 364
           D+A+   K+M     +P+ ++YR L       +LV E                 F    L
Sbjct: 393 DRAASYFKKMKEARLEPDLVSYRTLLYAFSIRHLVGEAEILVSEMDERGLEIDEFTQSAL 452

Query: 365 GMKLITTKKVRSSTPW-----LETTLSI------IEIFAEKGDVGNAENLFEELKKANYT 413
               I    ++ S  W     LE  +S       I+ + E+G +  AE  F   K++   
Sbjct: 453 TRMYIEAGMLKKSWLWFRRFHLEGNMSSECYSANIDAYGERGHILEAEKAFLCCKESRKL 512

Query: 414 KYTFVYNTLIKAYVKAKINDP--NLLRRMILGGARPDAETYSLL 455
                +N +IKAY  +   +    L+  M   G  PD  +Y+ L
Sbjct: 513 S-VLEFNVMIKAYGISNRYEKACQLIDSMENHGVLPDKFSYNSL 555



 Score = 43.9 bits (102), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 43/189 (22%), Positives = 79/189 (41%), Gaps = 10/189 (5%)

Query: 272 YVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMS 331
           Y + +   G+  +    E LW EM S         Y ++I VY K G  ++A   L  M+
Sbjct: 199 YNIMLRILGKARKWHHVESLWDEMMSRGITPVNSTYGTLIDVYSKGGLTEEALHWLDRMN 258

Query: 332 MNGCKPNAITYRHLALGCFKSNLVEEG-FKALELGMKLITTKKVRSSTPWLE--TTLSII 388
             G +P+ +T     +G       + G FK  E   K  + +        L   T  ++I
Sbjct: 259 KQGMEPDEVT-----MGVVVQTYKKAGEFKKAEQFFKNWSLESASQPHVCLSSYTYNTLI 313

Query: 389 EIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIK-AYVKAKIND-PNLLRRMILGGAR 446
           + + + G +  A + F  + +      T  +NT+I       ++ +  +L+++M      
Sbjct: 314 DTYGKAGQLREASDTFAWMLREGIIPNTVTFNTMIHICGNHGQLEEAASLMQKMEELRCP 373

Query: 447 PDAETYSLL 455
           PD  TY++L
Sbjct: 374 PDTRTYNIL 382



 Score = 39.7 bits (91), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 36/148 (24%), Positives = 68/148 (45%), Gaps = 8/148 (5%)

Query: 272 YVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMS 331
           Y   I +F ++ Q+  AE L+ EM           Y  +I+ +   G + +A   +  + 
Sbjct: 587 YCAVISSFIKLGQLEMAEGLFKEMIGYNVQPDVVVYGILINAFADVGNVREAVNYVNALR 646

Query: 332 MNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIF 391
             G   NA+ Y  L     K   +EE  +A     K++   +V    P + ++  +I+++
Sbjct: 647 NAGLPMNAVIYNSLIKLYTKVGYLEEAQEAY----KMLQASEV---GPDVYSSNCMIDLY 699

Query: 392 AEKGDVGNAENLFEELK-KANYTKYTFV 418
           +E+  V  AE +FE LK K +  +++F 
Sbjct: 700 SERSMVKQAEEIFESLKRKGDANEFSFA 727


>gi|225452658|ref|XP_002276556.1| PREDICTED: pentatricopeptide repeat-containing protein At5g39980,
           chloroplastic [Vitis vinifera]
 gi|296087770|emb|CBI35026.3| unnamed protein product [Vitis vinifera]
          Length = 675

 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 88/386 (22%), Positives = 177/386 (45%), Gaps = 38/386 (9%)

Query: 43  KRALEVMEWVIRERPYRPKELDYSYLLEFTIKN------HGISQGEKLFCCIPKDYQNEL 96
           +R+L +++W+  E  Y P    Y+ ++   ++       HG+ +  +     P  Y    
Sbjct: 136 QRSLALLDWINEEASYSPSVFAYNVVIRNVLRAKQWELAHGLFEEMRQRALAPDRYT--- 192

Query: 97  LYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQM 156
            Y+ L+     +G+   +L +++KM     S   ++++ LI L+          +I  ++
Sbjct: 193 -YSTLITHFGKEGMFDSALSWLQKMEQDRVSGDLVLYSNLIELSRKLCDYSKAISIFSRL 251

Query: 157 KADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLY 216
           K   ++P +  ++ ++ +            +  +M+   V P+ VSY  L +      +Y
Sbjct: 252 KRSGISPDLVAYNSMINVFGKAKLFREARLLLPEMRAGGVMPDTVSYSTLLS------MY 305

Query: 217 TVAETYVEALEKSMTGN------NWSTLDVLIILYGYLAKGKDLERIWATVQEL---PNV 267
                YVEAL      N      + +T +V+I +YG L   K+ +R++ +++++   P +
Sbjct: 306 VENGKYVEALSVFSEMNEVRCPLDLTTCNVMIDVYGQLDMAKEADRLFWSMRKMGIEPGI 365

Query: 268 RSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLL 327
            S + +L +  +G       A  L+  MQ     +    YN++I +Y K+   +KA+ L+
Sbjct: 366 VSYNTLLRV--YGEAELFGEAIHLFRLMQRKDIEQNVVTYNTMIKIYGKSLEHEKATNLV 423

Query: 328 KEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTL-- 385
           +EM   G +PNAITY         S ++    KA +L    +  +K+RSS   ++  L  
Sbjct: 424 QEMQNRGIEPNAITY---------STIISIWDKAGKLDRAAMLFQKLRSSGIEIDQVLYQ 474

Query: 386 SIIEIFAEKGDVGNAENLFEELKKAN 411
           ++I  +   G V +A+ L  ELK+ +
Sbjct: 475 TMIVAYERAGLVAHAKRLLHELKRPD 500



 Score = 46.2 bits (108), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 57/270 (21%), Positives = 111/270 (41%), Gaps = 41/270 (15%)

Query: 162 APHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAET 221
           +P V  ++++++        E    ++ +M++  + P+  +Y  L T      ++  A +
Sbjct: 152 SPSVFAYNVVIRNVLRAKQWELAHGLFEEMRQRALAPDRYTYSTLITHFGKEGMFDSALS 211

Query: 222 YVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGR 281
           +++ +E+     +       ++LY  L    +L R           +   Y  AI  F R
Sbjct: 212 WLQKMEQDRVSGD-------LVLYSNLI---ELSR-----------KLCDYSKAISIFSR 250

Query: 282 IAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAIT 341
           + +   + +L               YNS+I+V+ K     +A  LL EM   G  P+ ++
Sbjct: 251 LKRSGISPDL-------------VAYNSMINVFGKAKLFREARLLLPEMRAGGVMPDTVS 297

Query: 342 YRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAE 401
           Y  L      S  VE G K +E         +VR     L T   +I+++ +      A+
Sbjct: 298 YSTLL-----SMYVENG-KYVEALSVFSEMNEVRCPLD-LTTCNVMIDVYGQLDMAKEAD 350

Query: 402 NLFEELKKANYTKYTFVYNTLIKAYVKAKI 431
            LF  ++K         YNTL++ Y +A++
Sbjct: 351 RLFWSMRKMGIEPGIVSYNTLLRVYGEAEL 380



 Score = 43.1 bits (100), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 40/151 (26%), Positives = 65/151 (43%), Gaps = 9/151 (5%)

Query: 307 YNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGM 366
           YN VI    +    + A GL +EM      P+  TY  L     K  + +     L+   
Sbjct: 158 YNVVIRNVLRAKQWELAHGLFEEMRQRALAPDRYTYSTLITHFGKEGMFDSALSWLQ--- 214

Query: 367 KLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAY 426
                ++ R S   +  + ++IE+  +  D   A ++F  LK++  +     YN++I  +
Sbjct: 215 ---KMEQDRVSGDLVLYS-NLIELSRKLCDYSKAISIFSRLKRSGISPDLVAYNSMINVF 270

Query: 427 VKAKINDPN--LLRRMILGGARPDAETYSLL 455
            KAK+      LL  M  GG  PD  +YS L
Sbjct: 271 GKAKLFREARLLLPEMRAGGVMPDTVSYSTL 301


>gi|449495714|ref|XP_004159923.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At5g39710-like [Cucumis sativus]
          Length = 749

 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 93/397 (23%), Positives = 169/397 (42%), Gaps = 56/397 (14%)

Query: 68  LLEFTIKNHGISQGEKLFCCIPKDY----QNELLYNNLVIACLDKGVIKLSLEYMKKMRV 123
           L E  + N     GE LF C+   Y     +  +++ +V +C    +I  +L  +   + 
Sbjct: 101 LAEEVVVNTVDETGEDLFQCLKNSYYQCKSSSAVFDLVVKSCARVNLINKALSIVNLAKS 160

Query: 124 LGHSISYLVFNRLIILNSSPGRRKTIP---NILRQMKADKVAPHVSTFHILMKIEANDHN 180
            G     L +N   IL++    ++++     I ++M    V+P+V T++IL++      N
Sbjct: 161 YGFMPGVLSYNA--ILDAVIRTKQSVKIAEGIFKEMVESGVSPNVYTYNILIRGFCTAGN 218

Query: 181 IEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDV 240
           +E  +  + +M+R+   PN V+Y  +  A+   +L  + E +                  
Sbjct: 219 LEMGLXFFGEMERNGCLPNVVTYNTIIDAYC--KLRKIGEAF------------------ 258

Query: 241 LIILYGYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQ 300
                        L R+ A     PN+   SY + I    R  Q+    E+  EM   + 
Sbjct: 259 ------------KLLRLMALKGLNPNL--ISYNVVINGLCREGQMKETSEILEEMSKRRY 304

Query: 301 LKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFK 360
           +     +N++I+ YC  G   +A  L  EM  NG  PN +TY         + L+    K
Sbjct: 305 VPDRVTFNTLINGYCNVGNFHQALVLHAEMVKNGLSPNVVTY---------TTLINSMCK 355

Query: 361 A--LELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFV 418
           A  L   M+ +   + R   P   T  ++I+ F+++G +  A  + +E+ +  +T     
Sbjct: 356 AGNLNRAMEFLDQMRDRGLHPNGRTYTTLIDGFSQQGFLKQAYQIMKEMVENGFTPTIIT 415

Query: 419 YNTLIKAY-VKAKINDPN-LLRRMILGGARPDAETYS 453
           YN LI  + +  ++ D + LL+ MI  G  PD  +YS
Sbjct: 416 YNALINGHCILGRMEDASGLLQEMIERGFIPDVVSYS 452



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 100/438 (22%), Positives = 180/438 (41%), Gaps = 61/438 (13%)

Query: 33  INRLRKLQLNKRALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQGEKLFCCIPKD- 91
           IN L +    K   E++E + + R Y P  + ++ L+          Q   L   + K+ 
Sbjct: 280 INGLCREGQMKETSEILEEMSKRR-YVPDRVTFNTLINGYCNVGNFHQALVLHAEMVKNG 338

Query: 92  -YQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIP 150
              N + Y  L+ +    G +  ++E++ +MR  G   +   +  LI   S  G  K   
Sbjct: 339 LSPNVVTYTTLINSMCKAGNLNRAMEFLDQMRDRGLHPNGRTYTTLIDGFSQQGFLKQAY 398

Query: 151 NILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVE----PNEVSYCIL 206
            I+++M  +   P + T++ L+    N H I G M+  S + +  +E    P+ VSY  +
Sbjct: 399 QIMKEMVENGFTPTIITYNALI----NGHCILGRMEDASGLLQEMIERGFIPDVVSYSTI 454

Query: 207 ATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPN 266
            +               + LEK+        L V ++     AKG             P+
Sbjct: 455 ISGFCRN----------QELEKAFQ------LKVEMV-----AKGIS-----------PD 482

Query: 267 VRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGL 326
           V   +Y   I+   +  ++    +L+ EM S+        Y S+I+ YC  G +DKA  L
Sbjct: 483 V--ATYSSLIQGLCKQRRLGEVCDLFQEMLSLGLPPDEVTYTSLINAYCIEGDLDKALRL 540

Query: 327 LKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPW------ 380
             EM   G  P+ +TY  L  G  K +  +E  + L   +KL+  + V +   +      
Sbjct: 541 HDEMIQKGFSPDIVTYNVLINGFNKQSRTKEAKRLL---LKLLYEESVPNEITYNTLIDN 597

Query: 381 -----LETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKINDP- 434
                 ++ L++++ F  KG +  A+ + E + +  Y     VYN +I  + K    +  
Sbjct: 598 CNNLEFKSALALMKGFCMKGLMNEADRVLESMLQKGYKLNEEVYNVIIHGHSKVGNIEKA 657

Query: 435 -NLLRRMILGGARPDAET 451
            NL + M+  G  P + T
Sbjct: 658 YNLYKEMLHSGFAPHSVT 675



 Score = 50.8 bits (120), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 82/373 (21%), Positives = 156/373 (41%), Gaps = 64/373 (17%)

Query: 98  YNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGR------------ 145
           Y  L+     +G +K + + MK+M   G + + + +N LI  +   GR            
Sbjct: 381 YTTLIDGFSQQGFLKQAYQIMKEMVENGFTPTIITYNALINGHCILGRMEDASGLLQEMI 440

Query: 146 -RKTIPNILR----------------------QMKADKVAPHVSTFHILMKIEANDHNIE 182
            R  IP+++                       +M A  ++P V+T+  L++       + 
Sbjct: 441 ERGFIPDVVSYSTIISGFCRNQELEKAFQLKVEMVAKGISPDVATYSSLIQGLCKQRRLG 500

Query: 183 GLMKVYSDMKRSEVEPNEVSYCILATAHAV-ARLYTVAETYVEALEKSMTGNNWSTLDVL 241
            +  ++ +M    + P+EV+Y  L  A+ +   L      + E ++K  + +   T +VL
Sbjct: 501 EVCDLFQEMLSLGLPPDEVTYTSLINAYCIEGDLDKALRLHDEMIQKGFSPD-IVTYNVL 559

Query: 242 IILYGYLAKGKDLERIW----------------ATVQELPNVRSKSYVLAIEAFGRIAQV 285
           I  +   ++ K+ +R+                   +    N+  KS +  ++ F     +
Sbjct: 560 INGFNKQSRTKEAKRLLLKLLYEESVPNEITYNTLIDNCNNLEFKSALALMKGFCMKGLM 619

Query: 286 SRAEELWLEMQSVKQLKATEQ-YNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRH 344
           + A+ + LE    K  K  E+ YN +I  + K G I+KA  L KEM  +G  P+++T   
Sbjct: 620 NEADRV-LESMLQKGYKLNEEVYNVIIHGHSKVGNIEKAYNLYKEMLHSGFAPHSVTIMA 678

Query: 345 LALGCFKSNLVEEGFKALELGMKL-ITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENL 403
           LA      +L  EG K +EL   L  T K  R +   L   L  I I +++G++    N+
Sbjct: 679 LA-----KSLYHEG-KEVELNQLLDYTLKSCRITEAALAKVL--IGINSKEGNMDAVFNV 730

Query: 404 FEELKKANYTKYT 416
            +++  +    Y+
Sbjct: 731 LKDMALSGLLPYS 743


>gi|225457182|ref|XP_002280557.1| PREDICTED: pentatricopeptide repeat-containing protein At1g74850,
           chloroplastic [Vitis vinifera]
          Length = 869

 Score = 87.4 bits (215), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 75/315 (23%), Positives = 129/315 (40%), Gaps = 8/315 (2%)

Query: 116 EYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIE 175
           E +K+M   G       +N L+  ++  G  K    + RQM+     P+ +T+ IL+ + 
Sbjct: 308 ELLKEMESGGSFPDITSYNVLLEAHAQSGSIKEAMGVFRQMQGAGCVPNAATYSILLNLY 367

Query: 176 ANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNW 235
                 + +  ++ +MK S  EPN  +Y IL         +    T    + +     N 
Sbjct: 368 GRHGRYDDVRDLFLEMKVSNTEPNAATYNILINVFGEGGYFKEVVTLFHDMVEENVEPNM 427

Query: 236 STLDVLIILYGYLAKGKDLERIWATVQELPNV-RSKSYVLAIEAFGRIAQVSRAEELWLE 294
            T + LI   G     +D ++I   + E   V  SK+Y   IEA+G+ A    A   +  
Sbjct: 428 ETYEGLIFACGKGGLHEDAKKILLHMNEKGVVPSSKAYTGVIEAYGQAALYEEALVAFNT 487

Query: 295 MQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNL 354
           M  V      E YNS+I ++ K G   ++  +L +M  +G   N  T+  +     +   
Sbjct: 488 MNEVGSKPTVETYNSLIQMFAKGGLYKESEAILLKMGQSGVARNRDTFNGVIEAFRQGGQ 547

Query: 355 VEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTK 414
            EE  KA       +  +K R   P  +T  +++ ++   G V  +E  F E+K      
Sbjct: 548 FEEAIKA------YVEMEKARCD-PDEQTLEAVLSVYCFAGLVEESEEQFGEIKALGILP 600

Query: 415 YTFVYNTLIKAYVKA 429
               Y  ++  Y KA
Sbjct: 601 SVMCYCMMLAVYAKA 615



 Score = 86.7 bits (213), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 101/435 (23%), Positives = 183/435 (42%), Gaps = 69/435 (15%)

Query: 26  RGEIFHSINRLR-KLQLNKRALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQGEKL 84
           RG I   ++  + KL LN  AL   E+  R    R   L + Y+             ++ 
Sbjct: 94  RGSIARCLDVFKNKLSLNDFALVFKEFAQRGDWQRSLRL-FKYM-------------QRQ 139

Query: 85  FCCIPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPG 144
             C P    NE +Y  ++     +G+++   E   +M   G + S   F  LI      G
Sbjct: 140 IWCKP----NEHIYTIMIGVLGREGLLEKCQEIFDEMPSHGVAPSVFSFTALINAYGRNG 195

Query: 145 RRKTIPNILRQMKADKVAPHVSTFHILMKIEANDH-NIEGLMKVYSDMKRSEVEPNEVSY 203
           + K+   +L +MK ++V+P + T++ ++   A    + E L+ +++ M+   ++ + V+Y
Sbjct: 196 QYKSSLELLDRMKKERVSPSILTYNTVINSCARGGLDWEELLGLFAQMRHEGIQADIVTY 255

Query: 204 CILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQE 263
             L +A A   L                                   G + E ++ T+ E
Sbjct: 256 NTLLSACARRGL-----------------------------------GDEAEMVFRTMNE 280

Query: 264 ---LPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFI 320
              LP++ + SY+  +E FG++ ++ +  EL  EM+S         YN ++  + ++G I
Sbjct: 281 GGILPDITTYSYL--VETFGKLNRLEKVSELLKEMESGGSFPDITSYNVLLEAHAQSGSI 338

Query: 321 DKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPW 380
            +A G+ ++M   GC PNA TY  L L  +  +   +  + L L MK+  T+      P 
Sbjct: 339 KEAMGVFRQMQGAGCVPNAATYSIL-LNLYGRHGRYDDVRDLFLEMKVSNTE------PN 391

Query: 381 LETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKINDP--NLLR 438
             T   +I +F E G       LF ++ + N       Y  LI A  K  +++    +L 
Sbjct: 392 AATYNILINVFGEGGYFKEVVTLFHDMVEENVEPNMETYEGLIFACGKGGLHEDAKKILL 451

Query: 439 RMILGGARPDAETYS 453
            M   G  P ++ Y+
Sbjct: 452 HMNEKGVVPSSKAYT 466



 Score = 57.4 bits (137), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 56/227 (24%), Positives = 98/227 (43%), Gaps = 22/227 (9%)

Query: 240 VLIILYGYLAKGKDLERIWATVQELPNVRSK----SYVLAIEAFGRIAQVSRAEELWLEM 295
           +  I+ G L +   LE+      E+P+        S+   I A+GR  Q   + EL   M
Sbjct: 148 IYTIMIGVLGREGLLEKCQEIFDEMPSHGVAPSVFSFTALINAYGRNGQYKSSLELLDRM 207

Query: 296 QSVKQLKATEQYNSVISVYCKNGFID--KASGLLKEMSMNGCKPNAITYRHLALGCFKSN 353
           +  +   +   YN+VI+  C  G +D  +  GL  +M   G + + +TY  L   C +  
Sbjct: 208 KKERVSPSILTYNTVINS-CARGGLDWEELLGLFAQMRHEGIQADIVTYNTLLSACARRG 266

Query: 354 LVEEG---FKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKA 410
           L +E    F+ +  G  L          P + T   ++E F +   +     L +E++  
Sbjct: 267 LGDEAEMVFRTMNEGGIL----------PDITTYSYLVETFGKLNRLEKVSELLKEMESG 316

Query: 411 NYTKYTFVYNTLIKAYVKA-KINDP-NLLRRMILGGARPDAETYSLL 455
                   YN L++A+ ++  I +   + R+M   G  P+A TYS+L
Sbjct: 317 GSFPDITSYNVLLEAHAQSGSIKEAMGVFRQMQGAGCVPNAATYSIL 363



 Score = 39.7 bits (91), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 65/309 (21%), Positives = 118/309 (38%), Gaps = 75/309 (24%)

Query: 98  YNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMK 157
           YN L+ A    G IK ++   ++M+  G   +   ++ L+ L    GR   + ++  +MK
Sbjct: 325 YNVLLEAHAQSGSIKEAMGVFRQMQGAGCVPNAATYSILLNLYGRHGRYDDVRDLFLEMK 384

Query: 158 ADKVAPHVSTFHILMKI----------------------EANDHNIEGLM---------- 185
                P+ +T++IL+ +                      E N    EGL+          
Sbjct: 385 VSNTEPNAATYNILINVFGEGGYFKEVVTLFHDMVEENVEPNMETYEGLIFACGKGGLHE 444

Query: 186 ---KVYSDMKRSEVEPNEVSYCILATAHAVARLYTVA----------------ETYVEAL 226
              K+   M    V P+  +Y  +  A+  A LY  A                ETY   +
Sbjct: 445 DAKKILLHMNEKGVVPSSKAYTGVIEAYGQAALYEEALVAFNTMNEVGSKPTVETYNSLI 504

Query: 227 EKSMTGNNWSTLDVLIILYGY--LAKGKDL---------------ERIWATVQEL----- 264
           +    G  +   + +++  G   +A+ +D                E I A V+       
Sbjct: 505 QMFAKGGLYKESEAILLKMGQSGVARNRDTFNGVIEAFRQGGQFEEAIKAYVEMEKARCD 564

Query: 265 PNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKAS 324
           P+ ++   VL++  F  +  V  +EE + E++++  L +   Y  +++VY K    D A 
Sbjct: 565 PDEQTLEAVLSVYCFAGL--VEESEEQFGEIKALGILPSVMCYCMMLAVYAKADRWDDAH 622

Query: 325 GLLKEMSMN 333
            LL EM  N
Sbjct: 623 QLLDEMFTN 631


>gi|255586139|ref|XP_002533731.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223526356|gb|EEF28650.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 835

 Score = 87.4 bits (215), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 95/430 (22%), Positives = 188/430 (43%), Gaps = 32/430 (7%)

Query: 43  KRALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQ----GEKLFCCIP-KDYQNEL- 96
           ++AL + EW +       +++D  + +E  ++  G         KLF  IP  DY  ++ 
Sbjct: 165 EKALLLFEWSVLNLGIANEKID-RHAIELMVRILGRESQHTVASKLFDVIPLDDYVLDVR 223

Query: 97  LYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRR-KTIPNILRQ 155
            Y  ++ A    G    ++E  ++M   G S S + +N ++ +    GR    I  +L +
Sbjct: 224 AYTTILHAYSRTGKYHRAIEIFERMNESGLSPSLVTYNVMLDVYGKMGRSWDKILELLDE 283

Query: 156 MKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARL 215
           M++  +     T   ++     +  I+   + +S +K    +P  V+Y  L      A +
Sbjct: 284 MRSRGLDFDEFTCSTVLSACGREGLIDEAREFFSGLKSEGYKPGTVTYNALLHVFGKAGI 343

Query: 216 YTVAETYVEALEKSMTGNNWSTLDVLIILY---GYLAKGKDLERIWATVQELPNVRSKSY 272
           ++ A + +  +E++    +  T + ++  Y   G+  +G  +    A+   +PN  + +Y
Sbjct: 344 FSEALSVLSEMEENNCPPDAVTYNEVVAAYVRAGFHEEGAVVIDAMASKGIMPN--AVTY 401

Query: 273 VLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSM 332
              I A+GR+  + +A E++ +M  +  +     YN+V+ +  K    ++   +L  M +
Sbjct: 402 TTIINAYGRVGDIDKALEMFDQMMELGCVPNVATYNAVLGMLGKKSLSEEMMKILGHMKL 461

Query: 333 NGCKPNAITYRHLALGCFKSNL---VEEGFKALELGMKLITTKKVRSSTPWLETTLSIIE 389
           NGC PN IT+  +   C K  +   V + F+ +          K     P  +T  ++I 
Sbjct: 462 NGCSPNHITWNTMLAMCGKKGMHKYVNQVFREM----------KNCGFEPDRDTFNTLIS 511

Query: 390 IFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKINDPNLLRRMILG----GA 445
            +   G   +A  + EE+ KA ++     YN L+ A   A+  D      +IL     G 
Sbjct: 512 AYGRCGSNNDAAKMHEEMIKAGFSPCINTYNALLNAL--ARRGDWKAAESVILDMRNKGF 569

Query: 446 RPDAETYSLL 455
           RP   +YSL+
Sbjct: 570 RPSETSYSLM 579



 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 83/384 (21%), Positives = 152/384 (39%), Gaps = 65/384 (16%)

Query: 83  KLFCCIPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSS 142
           KL  C P    N + +N ++  C  KG+ K   +  ++M+  G       FN LI     
Sbjct: 460 KLNGCSP----NHITWNTMLAMCGKKGMHKYVNQVFREMKNCGFEPDRDTFNTLISAYGR 515

Query: 143 PGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVS 202
            G       +  +M     +P ++T++ L+   A   + +    V  DM+     P+E S
Sbjct: 516 CGSNNDAAKMHEEMIKAGFSPCINTYNALLNALARRGDWKAAESVILDMRNKGFRPSETS 575

Query: 203 YCILATAHAVARLYTVAETYVEALEKSMTGNN----WSTLDVLIILYGYLAKGKDLERIW 258
           Y ++   H+ A+   V    +E +EKS+   +    W  L  L++          +ER +
Sbjct: 576 YSLM--VHSYAKGGNVKG--IEMIEKSIYDGDIFPSWMLLRTLVLANFKCRSLTGMERAF 631

Query: 259 ATVQEL---PNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYC 315
             +Q+    P++   + +L+I  F +     RA E+   +           +NS++ +Y 
Sbjct: 632 QALQKHGYKPDLVLCNSMLSI--FAKNNMYDRAHEMLRLIHDAGLQPDLVTHNSLMDMYA 689

Query: 316 KNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVR 375
           + G   KA  +L+ +  +G KP+ ++Y  +  G  +  L++EG                 
Sbjct: 690 RGGDCWKAEEVLRMLQTSGGKPDLVSYNTVIKGFCRKGLMQEG----------------- 732

Query: 376 SSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVK----AKI 431
                       I I +E   +G    +             F YNT I  Y       +I
Sbjct: 733 ------------IRILSEMTSIGVGPCI-------------FTYNTFISGYAAQGMFTEI 767

Query: 432 NDPNLLRRMILGGARPDAETYSLL 455
           ND  ++  MI+   RP+  TY ++
Sbjct: 768 ND--VISYMIVHNCRPNELTYKIV 789



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 54/263 (20%), Positives = 110/263 (41%), Gaps = 5/263 (1%)

Query: 98  YNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMK 157
           YN L+ A   +G  K +   +  MR  G   S   ++ ++   +  G  K I  I + + 
Sbjct: 541 YNALLNALARRGDWKAAESVILDMRNKGFRPSETSYSLMVHSYAKGGNVKGIEMIEKSIY 600

Query: 158 ADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYT 217
              + P       L+       ++ G+ + +  +++   +P+ V    + +  A   +Y 
Sbjct: 601 DGDIFPSWMLLRTLVLANFKCRSLTGMERAFQALQKHGYKPDLVLCNSMLSIFAKNNMYD 660

Query: 218 VAETYVEALEKSMTGNNWSTLDVLIILY---GYLAKGKDLERIWATVQELPNVRSKSYVL 274
            A   +  +  +    +  T + L+ +Y   G   K +++ R+  T    P++   SY  
Sbjct: 661 RAHEMLRLIHDAGLQPDLVTHNSLMDMYARGGDCWKAEEVLRMLQTSGGKPDL--VSYNT 718

Query: 275 AIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNG 334
            I+ F R   +     +  EM S+        YN+ IS Y   G   + + ++  M ++ 
Sbjct: 719 VIKGFCRKGLMQEGIRILSEMTSIGVGPCIFTYNTFISGYAAQGMFTEINDVISYMIVHN 778

Query: 335 CKPNAITYRHLALGCFKSNLVEE 357
           C+PN +TY+ +A G  K+   +E
Sbjct: 779 CRPNELTYKIVADGYCKARRYDE 801



 Score = 39.7 bits (91), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 49/212 (23%), Positives = 92/212 (43%), Gaps = 8/212 (3%)

Query: 24  VHRGEIFHSINRLRKLQLNK---RALEVME---WVIRERPYRPKELDYSYLLEFTIKNHG 77
           ++ G+IF S   LR L L     R+L  ME     +++  Y+P  +  + +L    KN+ 
Sbjct: 599 IYDGDIFPSWMLLRTLVLANFKCRSLTGMERAFQALQKHGYKPDLVLCNSMLSIFAKNNM 658

Query: 78  ISQGEKLFCCI-PKDYQNELL-YNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNR 135
             +  ++   I     Q +L+ +N+L+      G    + E ++ ++  G     + +N 
Sbjct: 659 YDRAHEMLRLIHDAGLQPDLVTHNSLMDMYARGGDCWKAEEVLRMLQTSGGKPDLVSYNT 718

Query: 136 LIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSE 195
           +I      G  +    IL +M +  V P + T++  +   A       +  V S M    
Sbjct: 719 VIKGFCRKGLMQEGIRILSEMTSIGVGPCIFTYNTFISGYAAQGMFTEINDVISYMIVHN 778

Query: 196 VEPNEVSYCILATAHAVARLYTVAETYVEALE 227
             PNE++Y I+A  +  AR Y  A  +V  ++
Sbjct: 779 CRPNELTYKIVADGYCKARRYDEAIDFVSKIK 810


>gi|15218284|ref|NP_172453.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75276860|sp|O04504.1|PPR27_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g09820
 gi|2160173|gb|AAB60736.1| Similar to N. tabacum salt-inducible protein (gb|U08285)
           [Arabidopsis thaliana]
 gi|332190378|gb|AEE28499.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 606

 Score = 87.4 bits (215), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 92/373 (24%), Positives = 177/373 (47%), Gaps = 21/373 (5%)

Query: 94  NELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLI---ILNSSPGRRKTIP 150
           N   +N ++ A    G +  + + M+ M+V G S + + +N LI         G+     
Sbjct: 222 NVFTFNVVINALCKTGKMNKARDVMEDMKVYGCSPNVVSYNTLIDGYCKLGGNGKMYKAD 281

Query: 151 NILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAH 210
            +L++M  + V+P+++TF+IL+     D N+ G MKV+ +M   +V+PN +SY  L    
Sbjct: 282 AVLKEMVENDVSPNLTTFNILIDGFWKDDNLPGSMKVFKEMLDQDVKPNVISYNSLINGL 341

Query: 211 AVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQ---ELPNV 267
                 + A +  + +  +    N  T + LI  +      K+   ++ +V+    +P  
Sbjct: 342 CNGGKISEAISMRDKMVSAGVQPNLITYNALINGFCKNDMLKEALDMFGSVKGQGAVPTT 401

Query: 268 RSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLL 327
           R   Y + I+A+ ++ ++     L  EM+    +     YN +I+  C+NG I+ A  L 
Sbjct: 402 R--MYNMLIDAYCKLGKIDDGFALKEEMEREGIVPDVGTYNCLIAGLCRNGNIEAAKKLF 459

Query: 328 KEMSMNGCKPNAITYRHLALG-CFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLS 386
            +++  G  P+ +T+  L  G C K     E  KA  L +K ++   ++   P   T   
Sbjct: 460 DQLTSKGL-PDLVTFHILMEGYCRKG----ESRKAAML-LKEMSKMGLK---PRHLTYNI 510

Query: 387 IIEIFAEKGDVGNAENLFEELKKANYTKYTFV-YNTLIKAYV-KAKINDPN-LLRRMILG 443
           +++ + ++G++  A N+  +++K    +     YN L++ Y  K K+ D N LL  M+  
Sbjct: 511 VMKGYCKEGNLKAATNMRTQMEKERRLRMNVASYNVLLQGYSQKGKLEDANMLLNEMLEK 570

Query: 444 GARPDAETYSLLK 456
           G  P+  TY ++K
Sbjct: 571 GLVPNRITYEIVK 583



 Score = 76.6 bits (187), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 92/397 (23%), Positives = 155/397 (39%), Gaps = 64/397 (16%)

Query: 76  HGISQGEKLFCCIPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNR 135
           H IS  + +  C+     N ++ + LV+A  +    +L  E  K+    G+ +S L    
Sbjct: 141 HAISMCDNV--CV-----NSIIADMLVLAYANNSRFELGFEAFKRSGYYGYKLSALSCKP 193

Query: 136 LIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSE 195
           L+I      R   +  + ++M   K+ P+V TF++++        +     V  DMK   
Sbjct: 194 LMIALLKENRSADVEYVYKEMIRRKIQPNVFTFNVVINALCKTGKMNKARDVMEDMKVYG 253

Query: 196 VEPNEVSYCILATAH----AVARLYTVAETYVEALEKSMTGNNWSTLDVLI--------- 242
             PN VSY  L   +       ++Y       E +E  ++  N +T ++LI         
Sbjct: 254 CSPNVVSYNTLIDGYCKLGGNGKMYKADAVLKEMVENDVSP-NLTTFNILIDGFWKDDNL 312

Query: 243 ------------------------ILYGYLAKGKDLERI-------WATVQELPNVRSKS 271
                                   ++ G    GK  E I        A VQ  PN+   +
Sbjct: 313 PGSMKVFKEMLDQDVKPNVISYNSLINGLCNGGKISEAISMRDKMVSAGVQ--PNL--IT 368

Query: 272 YVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMS 331
           Y   I  F +   +  A +++  ++    +  T  YN +I  YCK G ID    L +EM 
Sbjct: 369 YNALINGFCKNDMLKEALDMFGSVKGQGAVPTTRMYNMLIDAYCKLGKIDDGFALKEEME 428

Query: 332 MNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIF 391
             G  P+  TY  L  G  ++  +E   K  +     +T+K +    P L T   ++E +
Sbjct: 429 REGIVPDVGTYNCLIAGLCRNGNIEAAKKLFD----QLTSKGL----PDLVTFHILMEGY 480

Query: 392 AEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVK 428
             KG+   A  L +E+ K         YN ++K Y K
Sbjct: 481 CRKGESRKAAMLLKEMSKMGLKPRHLTYNIVMKGYCK 517


>gi|226501158|ref|NP_001146427.1| uncharacterized protein LOC100280009 [Zea mays]
 gi|219887141|gb|ACL53945.1| unknown [Zea mays]
          Length = 522

 Score = 87.4 bits (215), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 81/373 (21%), Positives = 161/373 (43%), Gaps = 20/373 (5%)

Query: 89  PKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKT 148
           P  +   +L++ L      + ++ L  E +KK  +LG     ++ N L       G+   
Sbjct: 119 PDGFTYSILFDGLTRTGESRTMLSLFAESLKKGVMLGAYTCSILLNGL----CKDGKVAK 174

Query: 149 IPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILAT 208
              +L  +    + P    ++ L+       ++ G   ++  MK   + P+ ++Y  L  
Sbjct: 175 AEQVLEMLVHTGLVPTTVIYNTLINGYCQVRDLRGAFCIFEQMKSRHIRPDHITYNALIN 234

Query: 209 AHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVR 268
                 + T AE  V  +EKS    +  T + LI  YG   +   LE+ +  + ++    
Sbjct: 235 GLCKLEMVTKAEDLVMEMEKSGVDPSVETFNTLIDAYGTAGQ---LEKCFTVLSDMQQKG 291

Query: 269 SKSYVLA----IEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKAS 324
            KS V++    ++AF +  ++  A  +  +M         + YNS+I  Y ++G  ++A 
Sbjct: 292 IKSDVISFGSVVKAFCKNGKIPEAVAILDDMIYKDVAPNAQVYNSIIDAYIESGDTEQAF 351

Query: 325 GLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETT 384
            L+++M  +G   + +TY  L  G  +S+ ++E         +LI T + +   P + + 
Sbjct: 352 LLVEKMKNSGVSASIVTYNLLLKGLCRSSQIDEA-------EELIYTLRNQGLRPDVVSY 404

Query: 385 LSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKA-KINDPNLL-RRMIL 442
            +II     KGD   A  L +E+ K         Y+TL+ A   A +++D   L ++M+ 
Sbjct: 405 NTIISACCNKGDTDKALELLQEMNKYGIRPTLRTYHTLVSALASAGRVHDMECLYQQMLH 464

Query: 443 GGARPDAETYSLL 455
               P +  Y ++
Sbjct: 465 KNVEPSSSIYGIM 477



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 65/318 (20%), Positives = 136/318 (42%), Gaps = 20/318 (6%)

Query: 144 GRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSY 203
           G+      +  +M    V P+  T++ ++       ++E   ++   M     +PN V+Y
Sbjct: 30  GKGSDALKVFDEMVDMGVVPNWITYNTMIDGHVKGGDLEAGFRLRDQMLHDGPKPNIVTY 89

Query: 204 CILATAHAVARLYTVAETYV---EALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWAT 260
            +L +   + R   + ET V   E    SM  + ++     I+  G    G+    +   
Sbjct: 90  NVLLS--GLCRAGRMDETRVLMDEMASHSMFPDGFT---YSILFDGLTRTGESRTMLSLF 144

Query: 261 VQEL-PNVRSKSYVLAI--EAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKN 317
            + L   V   +Y  +I      +  +V++AE++   +     +  T  YN++I+ YC+ 
Sbjct: 145 AESLKKGVMLGAYTCSILLNGLCKDGKVAKAEQVLEMLVHTGLVPTTVIYNTLINGYCQV 204

Query: 318 GFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSS 377
             +  A  + ++M     +P+ ITY  L  G  K  +V    KA +L M++    +    
Sbjct: 205 RDLRGAFCIFEQMKSRHIRPDHITYNALINGLCKLEMVT---KAEDLVMEM----EKSGV 257

Query: 378 TPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVK-AKINDP-N 435
            P +ET  ++I+ +   G +     +  ++++         + +++KA+ K  KI +   
Sbjct: 258 DPSVETFNTLIDAYGTAGQLEKCFTVLSDMQQKGIKSDVISFGSVVKAFCKNGKIPEAVA 317

Query: 436 LLRRMILGGARPDAETYS 453
           +L  MI     P+A+ Y+
Sbjct: 318 ILDDMIYKDVAPNAQVYN 335



 Score = 41.2 bits (95), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 35/153 (22%), Positives = 66/153 (43%), Gaps = 23/153 (15%)

Query: 59  RPKELDYSYLLEFTIKNHGISQGEKLFCCIPKDYQNELLYNNLVIACLDKGVIKLSLEYM 118
           R  ++D +  L +T++N G+               + + YN ++ AC +KG    +LE +
Sbjct: 378 RSSQIDEAEELIYTLRNQGLRP-------------DVVSYNTIISACCNKGDTDKALELL 424

Query: 119 KKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEA-- 176
           ++M   G   +   ++ L+   +S GR   +  + +QM    V P  S + I++      
Sbjct: 425 QEMNKYGIRPTLRTYHTLVSALASAGRVHDMECLYQQMLHKNVEPSSSIYGIMVDAYVRC 484

Query: 177 -NDHNIEGLMK-------VYSDMKRSEVEPNEV 201
            ND  +  L K        + D KRS  E + +
Sbjct: 485 ENDSKVASLKKEMSEKGIAFDDTKRSNHELDRI 517


>gi|302806665|ref|XP_002985064.1| hypothetical protein SELMODRAFT_424099 [Selaginella moellendorffii]
 gi|300147274|gb|EFJ13939.1| hypothetical protein SELMODRAFT_424099 [Selaginella moellendorffii]
          Length = 1636

 Score = 87.4 bits (215), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 79/306 (25%), Positives = 137/306 (44%), Gaps = 42/306 (13%)

Query: 152  ILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHA 211
            +L QM ++   P + TF+ ++      + ++   ++++ ++ S   PN V+Y  L     
Sbjct: 1145 LLEQMLSNNCVPDIVTFNTIIDAMCKTYRVDIAYELFNLIQESGCTPNLVTYNSLVHGLC 1204

Query: 212  VARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSKS 271
             +R +  AE     L + MT     + D++                             +
Sbjct: 1205 KSRRFDQAEY----LLREMTRKQGCSPDII-----------------------------T 1231

Query: 272  YVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMS 331
            Y   I+   +  +V RA +L+L+M S         Y+ VIS  CK  F+D+A+ +L+ M 
Sbjct: 1232 YNTVIDGLCKSKRVDRAYKLFLQMLSDGLAPDDVTYSIVISSLCKWRFMDEANNVLELML 1291

Query: 332  MNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIF 391
             NG  P AITY  L  G  K+  ++   KALE+ ++L+ +K    S P + T    I+  
Sbjct: 1292 KNGFDPGAITYGTLIDGFCKTGNLD---KALEI-LQLLLSK---GSYPDVVTFSIFIDWL 1344

Query: 392  AEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKINDP--NLLRRMILGGARPDA 449
            +++G +  A  L E + +A     T  YNTL+K +  A + +   +L   M   G  PD 
Sbjct: 1345 SKRGRLRQAGELLETMLRAGLVPDTVTYNTLLKGFCDASLTEDAVDLFEVMRQCGCEPDN 1404

Query: 450  ETYSLL 455
             TY+ L
Sbjct: 1405 ATYTTL 1410



 Score = 84.7 bits (208), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 96/432 (22%), Positives = 182/432 (42%), Gaps = 30/432 (6%)

Query: 36   LRKLQLNKRALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQGEKLF----CCIPKD 91
            L+ ++    AL   +W   +  Y       + LL+  ++        +++    CC P  
Sbjct: 818  LQGVRNGDAALGFFDWATSQEGYNHDTYTCNCLLQALLRLKRPKDALQVYRNKLCCSPNM 877

Query: 92   YQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPN 151
            +   +L + L  A    G I  + E +K+M   G   + ++ N +I    S  +  +   
Sbjct: 878  FTFTILIHGLCRA----GDIGTAYELLKEMPRHGVPQNVILHNVVIKGLCSARKLDSALE 933

Query: 152  ILRQMK-ADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAH 210
            + ++M+ +    P V T+  ++        ++   ++  DM      PN V+Y  L    
Sbjct: 934  LFKEMEESGSCPPDVFTYSTIVDSLVKSGKVDDACRLVEDMVSKGCSPNVVTYSSLLHGL 993

Query: 211  AVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQEL------ 264
              A     A   ++ + +S    N  T +   I+ G+   G+ ++  +  ++E+      
Sbjct: 994  CKAGKLDEATALLQRMTRSGCSPNIVTYNT--IIDGHCKLGR-IDEAYHLLEEMVDGGCQ 1050

Query: 265  PNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKAS 324
            PNV   +Y + ++AF +  +   A  L   M     +     YNS++ ++CK   +++A 
Sbjct: 1051 PNV--VTYTVLLDAFCKCGKAEDAIGLVEVMVEKGYVPNLFTYNSLLDMFCKKDEVERAC 1108

Query: 325  GLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETT 384
             LL  M   GC PN ++Y  +  G  K+  V EG   LE   ++++   V    P + T 
Sbjct: 1109 QLLSSMIQKGCVPNVVSYNTVIAGLCKATKVHEGVLLLE---QMLSNNCV----PDIVTF 1161

Query: 385  LSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKINDPN--LLRRMIL 442
             +II+   +   V  A  LF  ++++  T     YN+L+    K++  D    LLR M  
Sbjct: 1162 NTIIDAMCKTYRVDIAYELFNLIQESGCTPNLVTYNSLVHGLCKSRRFDQAEYLLREMTR 1221

Query: 443  -GGARPDAETYS 453
              G  PD  TY+
Sbjct: 1222 KQGCSPDIITYN 1233



 Score = 76.6 bits (187), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 89/404 (22%), Positives = 171/404 (42%), Gaps = 21/404 (5%)

Query: 33  INRLRKLQLNKRALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQGEKLFCCIP-KD 91
           IN L KL     A  VM+ +I +R  +P  + Y  L++   +   +    +L   +  + 
Sbjct: 307 INGLCKLDQVDEACRVMDKMI-QRGCQPNVITYGTLVDGFCRVGDLDGAVELVRKMTERG 365

Query: 92  YQ-NELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIP 150
           Y+ N + YNN++     +  ++ + + ++ M   G     + ++ +I      G+ +   
Sbjct: 366 YRPNAITYNNIMHVFCRRNDMERAHQVLQMMIQTGCPPDAINYSTIISGFCKAGKLREAH 425

Query: 151 NILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAH 210
           ++L QM      P V+    L+        I+   ++       +  P+ V+Y IL  A 
Sbjct: 426 DLLEQMIRRGCRPDVACLSTLIDALCKAAAIDSAQELLRMSIGMDCAPDVVAYSILIHAL 485

Query: 211 AVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQEL------ 264
             A+    AE++++ + K+    +  T + ++     L K + +   +     +      
Sbjct: 486 CKAKRLPEAESWLDVMVKNRCYPDVVTYNSVV---DGLCKSRRINDAFLLFDRMRAAGVM 542

Query: 265 PNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKAS 324
           P+V   +Y + I +F +   +  A ++   M+  K +     Y+++I+  CK G +DKA 
Sbjct: 543 PDV--VTYSIVIHSFCKDNNLDSAFKMLERMKEAKCVPDVVTYSALINGLCKAGTVDKAF 600

Query: 325 GLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETT 384
            + +EM   GC PN +TY  L  G  K N VE+  + LE+  K       +S TP   T 
Sbjct: 601 DVFQEMLGCGCAPNLVTYNTLIDGLCKINKVEQAAEMLEIMRK-------QSCTPDSITY 653

Query: 385 LSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVK 428
             +I        +  A  +  E+K          Y TL++A  K
Sbjct: 654 TCLINGLCNASRLEEAWRVLREMKDKGCLPDRMTYGTLLRALQK 697



 Score = 72.0 bits (175), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 81/366 (22%), Positives = 155/366 (42%), Gaps = 19/366 (5%)

Query: 98   YNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMK 157
            Y+ +V + +  G +  +   ++ M   G S + + ++ L+      G+      +L++M 
Sbjct: 951  YSTIVDSLVKSGKVDDACRLVEDMVSKGCSPNVVTYSSLLHGLCKAGKLDEATALLQRMT 1010

Query: 158  ADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYT 217
                +P++ T++ ++        I+    +  +M     +PN V+Y +L  A        
Sbjct: 1011 RSGCSPNIVTYNTIIDGHCKLGRIDEAYHLLEEMVDGGCQPNVVTYTVLLDAFCKCGKAE 1070

Query: 218  VAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLER----IWATVQE--LPNVRSKS 271
             A   VE + +     N  T + L+ ++    K  ++ER    + + +Q+  +PNV S +
Sbjct: 1071 DAIGLVEVMVEKGYVPNLFTYNSLLDMF---CKKDEVERACQLLSSMIQKGCVPNVVSYN 1127

Query: 272  YVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMS 331
             V+A     +  +V     L  +M S   +     +N++I   CK   +D A  L   + 
Sbjct: 1128 TVIA--GLCKATKVHEGVLLLEQMLSNNCVPDIVTFNTIIDAMCKTYRVDIAYELFNLIQ 1185

Query: 332  MNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIF 391
             +GC PN +TY  L  G  KS      F   E  ++ +T K+    +P + T  ++I+  
Sbjct: 1186 ESGCTPNLVTYNSLVHGLCKS----RRFDQAEYLLREMTRKQ--GCSPDIITYNTVIDGL 1239

Query: 392  AEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKINDP--NLLRRMILGGARPDA 449
             +   V  A  LF ++           Y+ +I +  K +  D   N+L  M+  G  P A
Sbjct: 1240 CKSKRVDRAYKLFLQMLSDGLAPDDVTYSIVISSLCKWRFMDEANNVLELMLKNGFDPGA 1299

Query: 450  ETYSLL 455
             TY  L
Sbjct: 1300 ITYGTL 1305



 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 95/456 (20%), Positives = 180/456 (39%), Gaps = 27/456 (5%)

Query: 11  GSAFQSWMREGFPVHRGEIFHSI--NRLRKLQLNKRALEVMEWVIRERPYRPKELDYSYL 68
           G++ +  +R     +RG++   I    L++L     AL   EW      Y+ +    + L
Sbjct: 73  GASDEQALRVALDEYRGQLSPEIVGKVLQRLIDPGAALVFFEWAETRDGYQHEIFCCNCL 132

Query: 69  LEFTIKNHGISQGEKLF-CCIPKDYQNE-LLYNNLVIACLDKGVIKLSLEYMKKMRVLGH 126
           L   +K H  SQ   LF   I   +  + + Y+ L+   +  G I  + E   +M   G 
Sbjct: 133 LNVLVKAHQYSQAHDLFRSRIEGQWGGDTVTYSTLISGFIRAGKILPAYELFDEMNRKGL 192

Query: 127 SISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMK 186
                V   ++      G+        R+M +    P   T++ ++   +    ++  ++
Sbjct: 193 KAHAGVHKSILRGLCDAGQCSDAVLHFREM-SKTCPPDSVTYNTMINGLSKSDRLDDAIR 251

Query: 187 VYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMT-GNNWSTLDVLIILY 245
           +  +M  +   PN  SY      H   +   V E  +  LE+ +T G     +    ++ 
Sbjct: 252 LLEEMVDNGFAPNVFSY--NTVLHGFCKANRV-ENALWLLEQMVTRGCPPDVVSYTTVIN 308

Query: 246 GYLAKGKDLERIWATVQEL------PNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVK 299
           G L K   ++     + ++      PNV   +Y   ++ F R+  +  A EL  +M    
Sbjct: 309 G-LCKLDQVDEACRVMDKMIQRGCQPNV--ITYGTLVDGFCRVGDLDGAVELVRKMTERG 365

Query: 300 QLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGF 359
                  YN+++ V+C+   +++A  +L+ M   GC P+AI Y  +  G  K+  + E  
Sbjct: 366 YRPNAITYNNIMHVFCRRNDMERAHQVLQMMIQTGCPPDAINYSTIISGFCKAGKLREAH 425

Query: 360 KALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVY 419
             LE  ++       R   P +    ++I+   +   + +A+ L       +       Y
Sbjct: 426 DLLEQMIR-------RGCRPDVACLSTLIDALCKAAAIDSAQELLRMSIGMDCAPDVVAY 478

Query: 420 NTLIKAYVKAK--INDPNLLRRMILGGARPDAETYS 453
           + LI A  KAK      + L  M+     PD  TY+
Sbjct: 479 SILIHALCKAKRLPEAESWLDVMVKNRCYPDVVTYN 514



 Score = 62.8 bits (151), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 48/191 (25%), Positives = 85/191 (44%), Gaps = 13/191 (6%)

Query: 269 SKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLK 328
           S +Y   I    +  ++  A  L  EM           YN+V+  +CK   ++ A  LL+
Sbjct: 230 SVTYNTMINGLSKSDRLDDAIRLLEEMVDNGFAPNVFSYNTVLHGFCKANRVENALWLLE 289

Query: 329 EMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSII 388
           +M   GC P+ ++Y  +  G  K + V+E  + ++   K+I     R   P + T  +++
Sbjct: 290 QMVTRGCPPDVVSYTTVINGLCKLDQVDEACRVMD---KMIQ----RGCQPNVITYGTLV 342

Query: 389 EIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKIND----PNLLRRMILGG 444
           + F   GD+  A  L  ++ +  Y      YN ++  + +   ND      +L+ MI  G
Sbjct: 343 DGFCRVGDLDGAVELVRKMTERGYRPNAITYNNIMHVFCRR--NDMERAHQVLQMMIQTG 400

Query: 445 ARPDAETYSLL 455
             PDA  YS +
Sbjct: 401 CPPDAINYSTI 411



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 71/337 (21%), Positives = 138/337 (40%), Gaps = 28/337 (8%)

Query: 131 LVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSD 190
           + +N +I   S   R      +L +M  +  AP+V +++ ++      + +E  + +   
Sbjct: 231 VTYNTMINGLSKSDRLDDAIRLLEEMVDNGFAPNVFSYNTVLHGFCKANRVENALWLLEQ 290

Query: 191 MKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAK 250
           M      P+ VSY      + + +L  V E     ++K +           +I YG L  
Sbjct: 291 MVTRGCPPDVVSY--TTVINGLCKLDQVDEA-CRVMDKMIQRGCQPN----VITYGTLVD 343

Query: 251 G----KDLERIWATVQEL------PNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQ 300
           G     DL+     V+++      PN  + + ++ +  F R   + RA ++   M     
Sbjct: 344 GFCRVGDLDGAVELVRKMTERGYRPNAITYNNIMHV--FCRRNDMERAHQVLQMMIQTGC 401

Query: 301 LKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFK 360
                 Y+++IS +CK G + +A  LL++M   GC+P+      L     K+  ++   +
Sbjct: 402 PPDAINYSTIISGFCKAGKLREAHDLLEQMIRRGCRPDVACLSTLIDALCKAAAIDSAQE 461

Query: 361 ALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYN 420
            L + + +          P +     +I    +   +  AE+  + + K         YN
Sbjct: 462 LLRMSIGM-------DCAPDVVAYSILIHALCKAKRLPEAESWLDVMVKNRCYPDVVTYN 514

Query: 421 TLIKAYVKA-KINDPNLL-RRMILGGARPDAETYSLL 455
           +++    K+ +IND  LL  RM   G  PD  TYS++
Sbjct: 515 SVVDGLCKSRRINDAFLLFDRMRAAGVMPDVVTYSIV 551



 Score = 48.9 bits (115), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 62/334 (18%), Positives = 135/334 (40%), Gaps = 36/334 (10%)

Query: 96   LLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQ 155
            + Y  L+      G +  +LE ++ +   G     + F+  I   S  GR +    +L  
Sbjct: 1300 ITYGTLIDGFCKTGNLDKALEILQLLLSKGSYPDVVTFSIFIDWLSKRGRLRQAGELLET 1359

Query: 156  MKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARL 215
            M    + P   T++ L+K   +    E  + ++  M++   EP+  +Y  L   H V + 
Sbjct: 1360 MLRAGLVPDTVTYNTLLKGFCDASLTEDAVDLFEVMRQCGCEPDNATYTTL-VGHLVDK- 1417

Query: 216  YTVAETYVEAL---EKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSKSY 272
                ++Y + L    KSM               G+    +   ++ A+++   +VR    
Sbjct: 1418 ----KSYKDLLAEVSKSMVDT------------GFKLNHELSSKLEASIEVEADVRLGCA 1461

Query: 273  VLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSM 332
            +  ++ FG+      A +++  M      +    +++++ VY  +   ++A GL + M +
Sbjct: 1462 I--VDMFGKCGSPQDARKVFEGMDQ----RNVVLWSAMLGVYVFHKQEEQAFGLWRVMGL 1515

Query: 333  NGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFA 392
             G +P+A+T+  L   C  + L++          + ++  +     P ++    +I++  
Sbjct: 1516 EGVEPDAVTFLSLLTMCCHAGLLDAAVD------EFVSISRDYGLEPGVDHFSCVIDLLG 1569

Query: 393  EKGDVGNAENLFEELKKANYTKYTFVYNTLIKAY 426
              G V  AE+L   +           +N L+ AY
Sbjct: 1570 RLGLVNEAEDLMLGMP---CKPSAATWNCLLSAY 1600



 Score = 47.0 bits (110), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 48/188 (25%), Positives = 82/188 (43%), Gaps = 12/188 (6%)

Query: 271 SYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQ-YNSVISVYCKNGFIDKASGLLKE 329
           +Y   I  F R  ++  A EL+ EM   K LKA    + S++   C  G    A    +E
Sbjct: 163 TYSTLISGFIRAGKILPAYELFDEMNR-KGLKAHAGVHKSILRGLCDAGQCSDAVLHFRE 221

Query: 330 MSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIE 389
           MS   C P+++TY  +  G  KS+ +++  + LE   +++         P + +  +++ 
Sbjct: 222 MSKT-CPPDSVTYNTMINGLSKSDRLDDAIRLLE---EMVDN----GFAPNVFSYNTVLH 273

Query: 390 IFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKINDP--NLLRRMILGGARP 447
            F +   V NA  L E++           Y T+I    K    D    ++ +MI  G +P
Sbjct: 274 GFCKANRVENALWLLEQMVTRGCPPDVVSYTTVINGLCKLDQVDEACRVMDKMIQRGCQP 333

Query: 448 DAETYSLL 455
           +  TY  L
Sbjct: 334 NVITYGTL 341


>gi|413920484|gb|AFW60416.1| hypothetical protein ZEAMMB73_230014 [Zea mays]
          Length = 700

 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 81/373 (21%), Positives = 161/373 (43%), Gaps = 20/373 (5%)

Query: 89  PKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKT 148
           P  +   +L++ L      + ++ L  E +KK  +LG     ++ N L       G+   
Sbjct: 297 PDGFTYSILFDGLTRTGESRTMLSLFAESLKKGVMLGAYTCSILLNGLC----KDGKVAK 352

Query: 149 IPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILAT 208
              +L  +    + P    ++ L+       ++ G   ++  MK   + P+ ++Y  L  
Sbjct: 353 AEQVLEMLVHTGLVPTTVIYNTLINGYCQVRDLRGAFCIFEQMKSRHIRPDHITYNALIN 412

Query: 209 AHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVR 268
                 + T AE  V  +EKS    +  T + LI  YG   +   LE+ +  + ++    
Sbjct: 413 GLCKLEMVTKAEDLVMEMEKSGVDPSVETFNTLIDAYGTAGQ---LEKCFTVLSDMQQKG 469

Query: 269 SKSYVLA----IEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKAS 324
            KS V++    ++AF +  ++  A  +  +M         + YNS+I  Y ++G  ++A 
Sbjct: 470 IKSDVISFGSVVKAFCKNGKIPEAVAILDDMIYKDVAPNAQVYNSIIDAYIESGDTEQAF 529

Query: 325 GLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETT 384
            L+++M  +G   + +TY  L  G  +S+ ++E         +LI T + +   P + + 
Sbjct: 530 LLVEKMKNSGVSASIVTYNLLLKGLCRSSQIDEA-------EELIYTLRNQGLRPDVVSY 582

Query: 385 LSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKA-KINDPNLL-RRMIL 442
            +II     KGD   A  L +E+ K         Y+TL+ A   A +++D   L ++M+ 
Sbjct: 583 NTIISACCNKGDTDKALELLQEMNKYGIRPTLRTYHTLVSALASAGRVHDMECLYQQMLH 642

Query: 443 GGARPDAETYSLL 455
               P +  Y ++
Sbjct: 643 KNVEPSSSIYGIM 655



 Score = 55.5 bits (132), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 76/370 (20%), Positives = 159/370 (42%), Gaps = 22/370 (5%)

Query: 94  NELLYNNLVIACLDKGVIKLSLEYMKKM-RVLGHSI-SYLVFNRLIILNSSPGRRKTIPN 151
           +   +N +V AC+  G + ++L  +++M R  G        +N +I      G+      
Sbjct: 156 DTFAWNKVVQACVAAGDLDVALAMVRRMGRSEGAPPPDAFSYNVVIAGLWRSGKGSDALK 215

Query: 152 ILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHA 211
           +  +M    V P+  T++ ++       ++E   ++   M     +PN V+Y +L +   
Sbjct: 216 VFDEMVDMGVVPNWITYNTMIDGHVKGGDLEAGFRLRDQMLHDGPKPNIVTYNVLLS--G 273

Query: 212 VARLYTVAETYV---EALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQEL-PNV 267
           + R   + ET V   E    SM  + ++     I+  G    G+    +    + L   V
Sbjct: 274 LCRAGRMDETRVLMDEMASHSMFPDGFT---YSILFDGLTRTGESRTMLSLFAESLKKGV 330

Query: 268 RSKSYVLAI--EAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASG 325
              +Y  +I      +  +V++AE++   +     +  T  YN++I+ YC+   +  A  
Sbjct: 331 MLGAYTCSILLNGLCKDGKVAKAEQVLEMLVHTGLVPTTVIYNTLINGYCQVRDLRGAFC 390

Query: 326 LLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTL 385
           + ++M     +P+ ITY  L  G  K  +V    KA +L M++    +     P +ET  
Sbjct: 391 IFEQMKSRHIRPDHITYNALINGLCKLEMVT---KAEDLVMEM----EKSGVDPSVETFN 443

Query: 386 SIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVK-AKINDP-NLLRRMILG 443
           ++I+ +   G +     +  ++++         + +++KA+ K  KI +   +L  MI  
Sbjct: 444 TLIDAYGTAGQLEKCFTVLSDMQQKGIKSDVISFGSVVKAFCKNGKIPEAVAILDDMIYK 503

Query: 444 GARPDAETYS 453
              P+A+ Y+
Sbjct: 504 DVAPNAQVYN 513



 Score = 41.6 bits (96), Expect = 0.89,   Method: Compositional matrix adjust.
 Identities = 35/153 (22%), Positives = 66/153 (43%), Gaps = 23/153 (15%)

Query: 59  RPKELDYSYLLEFTIKNHGISQGEKLFCCIPKDYQNELLYNNLVIACLDKGVIKLSLEYM 118
           R  ++D +  L +T++N G+               + + YN ++ AC +KG    +LE +
Sbjct: 556 RSSQIDEAEELIYTLRNQGLRP-------------DVVSYNTIISACCNKGDTDKALELL 602

Query: 119 KKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEA-- 176
           ++M   G   +   ++ L+   +S GR   +  + +QM    V P  S + I++      
Sbjct: 603 QEMNKYGIRPTLRTYHTLVSALASAGRVHDMECLYQQMLHKNVEPSSSIYGIMVDAYVRC 662

Query: 177 -NDHNIEGLMK-------VYSDMKRSEVEPNEV 201
            ND  +  L K        + D KRS  E + +
Sbjct: 663 ENDSKVASLKKEMSEKGIAFDDTKRSNHELDRI 695


>gi|255548417|ref|XP_002515265.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223545745|gb|EEF47249.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 504

 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 96/438 (21%), Positives = 184/438 (42%), Gaps = 9/438 (2%)

Query: 7   GEPVGSAFQSWMREGFPVHRGEIFHSINRLRKLQLNKRALEVMEWVIRERPYRPKELDYS 66
           G  V       + EG  + + E+   I  LRK +    A E+MEW + +R       D +
Sbjct: 51  GGSVSRTLNEHIMEGKTITKIELSRCIRELRKYRRFDHAFEIMEW-MEKRKMNFSYADRA 109

Query: 67  YLLEFTIKNHGISQGEKLFCCIPKDYQNELLYNNLVIACLDKGVIK-LSLEYMKKMRVLG 125
             L+   K  GI+  E  F  +    +N       ++ C  K ++   +L   ++M    
Sbjct: 110 IRLDLIGKARGIAAAEDYFNGLSPSAKNHHTSYGALLNCYCKELMSDKALALFQEMDEKK 169

Query: 126 HSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLM 185
              S L FN L+ +    G+ + +P ++ +MK  KV+P   T++I M+     ++ +G+ 
Sbjct: 170 FLYSSLPFNNLMSMYMRLGQPEKVPPLVDEMKKRKVSPCSFTYNIWMQSYGCLNDFQGVD 229

Query: 186 KVYSDMKRSEVEPN--EVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLII 243
           +V  ++     + N    +Y  LAT +  A ++  AE+ ++ LE  M   N      LI 
Sbjct: 230 RVLREIVNDGGKDNLQWTTYSNLATIYLKAGIFEKAESALKKLEAIMGFRNREAYHFLIS 289

Query: 244 LYGYLAKGKDLERIWATVQELPN-VRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLK 302
           +Y       ++ R+W  ++   N + + SY++ ++A  ++  V    + + E +S     
Sbjct: 290 IYAGTGNSNEVNRVWGLLKSSFNMINNLSYLVMLQALAKLKDVEGVAKCFREWESGCTNY 349

Query: 303 ATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKAL 362
                N  I V+ ++   ++A  +  +       P         L   K + ++   K +
Sbjct: 350 DMRIANVAIRVFLQHDMYEEAELIFDDALKRTRGPFFKARERFMLFFLKIHQLDLALKHM 409

Query: 363 ELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTL 422
                  +  +     P  ET  +  + F  + DV  AE L + LK  N    + VY+ L
Sbjct: 410 RAA---FSESEKHEWKPLQETVNAYFDYFRTEKDVDGAEKLSKILKHINCLNSS-VYSLL 465

Query: 423 IKAYVKAKINDPNLLRRM 440
           +K Y+ A    P + +R+
Sbjct: 466 LKTYIAAGKLAPEMRQRL 483


>gi|225447241|ref|XP_002272784.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g73710-like [Vitis vinifera]
          Length = 1008

 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 79/334 (23%), Positives = 145/334 (43%), Gaps = 17/334 (5%)

Query: 98  YNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMK 157
           YN L+      G +K + +   +M  LG ++  + FN +I    S G       +L +M+
Sbjct: 348 YNTLIDLYGKAGRLKDAADVFAEMLKLGVAMDTITFNTMIYTCGSHGHLSEAETLLTEME 407

Query: 158 ADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYT 217
              ++P   T++I + + A+  NI+  +K Y  ++   + P+ V++   A  H +     
Sbjct: 408 ERGISPDTKTYNIFLSLYADGGNIDAALKCYRKIREVGLFPDVVTH--RAVLHVLCERNM 465

Query: 218 VA--ETYVEALEKSMTGNNWSTLDVLIILY---GYLAKGKDLERIWATVQELPNVRSKSY 272
           V   ET +  +++S    +  ++ V+I +Y   G L K K              + S++ 
Sbjct: 466 VGEVETVIAEMKRSRVRVDEHSIPVVIKMYVNEGLLDKAKIFL---EEHLLEDELSSRTR 522

Query: 273 VLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSM 332
           V  I+A+      + AE +++  + + Q K   +YN ++  Y K    DKA  L K M  
Sbjct: 523 VAIIDAYAEKGLWAEAENVFIGKRDLGQKKDVVEYNVMVKAYGKAKLYDKAFSLFKGMRN 582

Query: 333 NGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFA 392
           +G  PN  TY  L       +LV+E    L    K+          P   T  ++I  +A
Sbjct: 583 HGTWPNESTYNSLIQMFSGGDLVDEARGILAEMQKM-------GFKPQCLTFSAVIACYA 635

Query: 393 EKGDVGNAENLFEELKKANYTKYTFVYNTLIKAY 426
             G + +A  ++EE+ +        VY +LI  +
Sbjct: 636 RLGRLPDAVGVYEEMVRLGVKPNEVVYGSLINGF 669



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 101/452 (22%), Positives = 183/452 (40%), Gaps = 60/452 (13%)

Query: 43  KRALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQGEKLFCCIPKDYQNELL----- 97
           +R L V EW+  +  Y P  + Y+ +L    +     + ++L  C  +  +N +L     
Sbjct: 165 ERVLRVFEWIKSQEDYVPNVIHYNVVLRVLGRAQ---KWDELRLCWIEMAKNGVLPTNNT 221

Query: 98  YNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMK 157
           Y  LV      G++K +L ++K M++ G      VF   + +N       T+  +L+   
Sbjct: 222 YGMLVDVYGKAGLVKEALLWIKHMKLRG------VFPDEVAMN-------TVVRVLKDAG 268

Query: 158 ADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNE---VSYCILATAHAVAR 214
               A        + K+E  D ++E +     ++  + V            +     ++ 
Sbjct: 269 EFDWADRFYRDWCVGKVELGDFDLESVADSDDEIGSAPVSLKHFLSTELFKIGGRRPISN 328

Query: 215 LYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELP-NVRSKSYV 273
           +   + T     +  +T    +T + LI LYG   + KD   ++A + +L   + + ++ 
Sbjct: 329 IMDSSNTDGSRRKPRLT----ATYNTLIDLYGKAGRLKDAADVFAEMLKLGVAMDTITFN 384

Query: 274 LAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMN 333
             I   G    +S AE L  EM+       T+ YN  +S+Y   G ID A    +++   
Sbjct: 385 TMIYTCGSHGHLSEAETLLTEMEERGISPDTKTYNIFLSLYADGGNIDAALKCYRKIREV 444

Query: 334 GCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWL------------ 381
           G  P+ +T+R +     + N+V E  + +   MK    +    S P +            
Sbjct: 445 GLFPDVVTHRAVLHVLCERNMVGE-VETVIAEMKRSRVRVDEHSIPVVIKMYVNEGLLDK 503

Query: 382 ----------------ETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKA 425
                            T ++II+ +AEKG    AEN+F   +     K    YN ++KA
Sbjct: 504 AKIFLEEHLLEDELSSRTRVAIIDAYAEKGLWAEAENVFIGKRDLGQKKDVVEYNVMVKA 563

Query: 426 YVKAKINDP--NLLRRMILGGARPDAETYSLL 455
           Y KAK+ D   +L + M   G  P+  TY+ L
Sbjct: 564 YGKAKLYDKAFSLFKGMRNHGTWPNESTYNSL 595



 Score = 58.5 bits (140), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 81/409 (19%), Positives = 156/409 (38%), Gaps = 25/409 (6%)

Query: 47  EVMEWVIRERPY-RPKELDYSYLLEFTIKNHGISQGEKLFCCIPKDYQNELLYNNLVIAC 105
           +V+E+ +  + Y + K  D ++ L   ++NHG              + NE  YN+L+   
Sbjct: 553 DVVEYNVMVKAYGKAKLYDKAFSLFKGMRNHGT-------------WPNESTYNSLIQMF 599

Query: 106 LDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHV 165
               ++  +   + +M+ +G     L F+ +I   +  GR      +  +M    V P+ 
Sbjct: 600 SGGDLVDEARGILAEMQKMGFKPQCLTFSAVIACYARLGRLPDAVGVYEEMVRLGVKPNE 659

Query: 166 STFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEA 225
             +  L+   +   N+E  +  +  M    +  N++    L  A++       A+T  E 
Sbjct: 660 VVYGSLINGFSETGNVEEALCYFRKMDEFGISANQIVLTSLIKAYSKVGCLEGAKTLYEG 719

Query: 226 LEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQV 285
           ++    G +    + +I LY  L    + + I+  +++  +    S+   +  +  +  +
Sbjct: 720 MKDLEGGPDIVASNSMINLYADLGLVSEAKLIFDDLRQKGSADGVSFATMMYLYKNLGML 779

Query: 286 SRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHL 345
             A ++  EM+    L+    +N V++ Y  NG +     LL EM      P+  T++ +
Sbjct: 780 DEAIDVADEMKQSGLLRDCASFNKVMACYATNGQLSACGELLHEMISRRILPDTGTFKVM 839

Query: 346 ALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFE 405
                K  L  E    LE           +   P+    + I  +F+  G    A    E
Sbjct: 840 FTVLKKGGLPTEAVTQLE--------SSYQEGKPYARQAV-ITSVFSTVGLHAFALESCE 890

Query: 406 ELKKANYTKYTFVYNTLIKAYVKAKINDPNL--LRRMILGGARPDAETY 452
               A     +  YN  I AY  +   D  L    +M   G  PD  TY
Sbjct: 891 TFLNAEVDLDSSFYNVAIYAYGASGSIDKALKMFMKMQDEGLEPDLVTY 939



 Score = 41.2 bits (95), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 59/301 (19%), Positives = 124/301 (41%), Gaps = 36/301 (11%)

Query: 94  NELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNIL 153
           NE++Y +L+    + G ++ +L Y +KM   G S + +V   LI   S  G  +    + 
Sbjct: 658 NEVVYGSLINGFSETGNVEEALCYFRKMDEFGISANQIVLTSLIKAYSKVGCLEGAKTLY 717

Query: 154 RQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVA 213
             MK  +  P +   + ++ + A+   +     ++ D+ R +   + VS+  +   +   
Sbjct: 718 EGMKDLEGGPDIVASNSMINLYADLGLVSEAKLIFDDL-RQKGSADGVSFATMMYLYKNL 776

Query: 214 RLYTVAETYVEALEKSMTGNNWSTLDVLIILY---GYLAKGKDLERIWATVQELPNVRSK 270
            +   A    + +++S    + ++ + ++  Y   G L+   +L     + + LP+  + 
Sbjct: 777 GMLDEAIDVADEMKQSGLLRDCASFNKVMACYATNGQLSACGELLHEMISRRILPDTGTF 836

Query: 271 SYVLAIEAFGRIAQ--VSRAEELWLEMQSVKQ-----------------LKATEQ----- 306
             +  +   G +    V++ E  + E +   +                 L++ E      
Sbjct: 837 KVMFTVLKKGGLPTEAVTQLESSYQEGKPYARQAVITSVFSTVGLHAFALESCETFLNAE 896

Query: 307 -------YNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGF 359
                  YN  I  Y  +G IDKA  +  +M   G +P+ +TY +LA GC+    + EG 
Sbjct: 897 VDLDSSFYNVAIYAYGASGSIDKALKMFMKMQDEGLEPDLVTYINLA-GCYGKAGMLEGL 955

Query: 360 K 360
           K
Sbjct: 956 K 956


>gi|357474081|ref|XP_003607325.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355508380|gb|AES89522.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 834

 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 86/361 (23%), Positives = 142/361 (39%), Gaps = 46/361 (12%)

Query: 98  YNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMK 157
           Y  +++AC+ +G    +L    +M  +G  ++ +V   L+      G       +  ++ 
Sbjct: 293 YTAVIVACVKQGNFVEALRLKDEMVSVGLPMNVIVTRSLMKGYCVLGDVNLALQLFDEVV 352

Query: 158 ADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNE-VSYCILATAHAVARLY 216
              V P V  F +L+   +   ++E   ++Y+ MK   ++PN  +   +L   H    L 
Sbjct: 353 EGGVVPDVVIFSVLINGCSKVGDMEKAYELYTRMKLMGIQPNVFIVNSLLEGFHEQNLLE 412

Query: 217 TVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSKSYVLAI 276
                + EA+E  +T          ++ Y  L K       W                  
Sbjct: 413 HAYGLFDEAVEHGITN---------VVTYNILLK-------W------------------ 438

Query: 277 EAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCK 336
              G + +V+ A  LW +M S     +   YN++I  +CK G +DKA  +LK +   G K
Sbjct: 439 --LGELGKVNEACNLWEKMVSKGITPSLVSYNNLILGHCKKGCMDKAYSMLKSILERGLK 496

Query: 337 PNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGD 396
           PNA+TY  L  G FK    E  F   E  M         +  P   T  ++I    + G 
Sbjct: 497 PNAVTYTLLIDGFFKKGDSERAFVVFEQMM-------AANIAPTDHTFNTVINGLGKTGR 549

Query: 397 VGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKINDPNLL--RRMILGGARPDAETYSL 454
           V   ++      K  +   +  YN++I  + K    D  LL  R M   G  PD  TY+ 
Sbjct: 550 VSETQDKLNNFIKQGFVSTSITYNSIIDGFFKEGAVDSALLAYREMCESGISPDVITYTS 609

Query: 455 L 455
           L
Sbjct: 610 L 610



 Score = 52.0 bits (123), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 66/326 (20%), Positives = 132/326 (40%), Gaps = 33/326 (10%)

Query: 53  IRERPYRPKELDYSYLLEFTIKNHGISQGEKLFCCI---------PKDYQNELLYNNLVI 103
           I ER  +P  + Y+ L++   K       E+ F            P D+     +N ++ 
Sbjct: 490 ILERGLKPNAVTYTLLIDGFFKK---GDSERAFVVFEQMMAANIAPTDHT----FNTVIN 542

Query: 104 ACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAP 163
                G +  + + +      G   + + +N +I      G   +     R+M    ++P
Sbjct: 543 GLGKTGRVSETQDKLNNFIKQGFVSTSITYNSIIDGFFKEGAVDSALLAYREMCESGISP 602

Query: 164 HVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHA-VARLYTVAETY 222
            V T+  L+      + I   ++++SDMK   ++ + V+Y  L      +  + + ++ +
Sbjct: 603 DVITYTSLIDGLCKSNKIGLALEMHSDMKYKGMKLDVVAYSALIDGFCKMHDMESASKFF 662

Query: 223 VEALEKSMTGNNWSTLDVLIILYGYLAKG----KDLERIWATVQELPNVRS----KSYVL 274
            E L+  +T N         ++Y  +  G     ++E      QE+   +     + Y  
Sbjct: 663 TELLDIGLTPNT--------VVYNSMISGFIHLNNMEAALNLHQEMIKNKVPCDLQVYTS 714

Query: 275 AIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNG 334
            I    +  ++S A +L+ EM S   +     Y  +I+    NG ++ AS +LKEM  N 
Sbjct: 715 IIGGLLKEGKLSLALDLYSEMLSKDIVPDIVMYTVLINGLSNNGQLENASKILKEMDGNN 774

Query: 335 CKPNAITYRHLALGCFKSNLVEEGFK 360
             P+ + Y  L  G F+   ++E F+
Sbjct: 775 ITPSVLVYNILIAGNFREGNLQEAFR 800



 Score = 44.3 bits (103), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 76/400 (19%), Positives = 154/400 (38%), Gaps = 45/400 (11%)

Query: 94  NELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNIL 153
           N + YN L+    + G +  +    +KM   G + S + +N LI+ +   G      ++L
Sbjct: 428 NVVTYNILLKWLGELGKVNEACNLWEKMVSKGITPSLVSYNNLILGHCKKGCMDKAYSML 487

Query: 154 RQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVA 213
           + +    + P+  T+ +L+       + E    V+  M  + + P + ++      + + 
Sbjct: 488 KSILERGLKPNAVTYTLLIDGFFKKGDSERAFVVFEQMMAANIAPTDHTFN--TVINGLG 545

Query: 214 RLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQEL------PNV 267
           +   V+ET  +       G   +++    I+ G+  +G  ++      +E+      P+V
Sbjct: 546 KTGRVSETQDKLNNFIKQGFVSTSITYNSIIDGFFKEGA-VDSALLAYREMCESGISPDV 604

Query: 268 RSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLL 327
              +Y   I+   +  ++  A E+  +M+          Y+++I  +CK   ++ AS   
Sbjct: 605 I--TYTSLIDGLCKSNKIGLALEMHSDMKYKGMKLDVVAYSALIDGFCKMHDMESASKFF 662

Query: 328 KEMSMNGCKPNAITYRHLALGCFKSN------------------------------LVEE 357
            E+   G  PN + Y  +  G    N                              L++E
Sbjct: 663 TELLDIGLTPNTVVYNSMISGFIHLNNMEAALNLHQEMIKNKVPCDLQVYTSIIGGLLKE 722

Query: 358 GFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTF 417
           G   L L + L +    +   P +     +I   +  G + NA  + +E+   N T    
Sbjct: 723 G--KLSLALDLYSEMLSKDIVPDIVMYTVLINGLSNNGQLENASKILKEMDGNNITPSVL 780

Query: 418 VYNTLIKA-YVKAKINDP-NLLRRMILGGARPDAETYSLL 455
           VYN LI   + +  + +   L   M+  G  PD  TY +L
Sbjct: 781 VYNILIAGNFREGNLQEAFRLHDEMLDKGLVPDDTTYDIL 820


>gi|449438681|ref|XP_004137116.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39710-like [Cucumis sativus]
          Length = 749

 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 93/397 (23%), Positives = 169/397 (42%), Gaps = 56/397 (14%)

Query: 68  LLEFTIKNHGISQGEKLFCCIPKDY----QNELLYNNLVIACLDKGVIKLSLEYMKKMRV 123
           L E  + N     GE LF C+   Y     +  +++ +V +C    +I  +L  +   + 
Sbjct: 101 LAEEVVVNTVDETGEDLFQCLKNSYYQCKSSSAVFDLVVKSCARVNLINKALSIVNLAKS 160

Query: 124 LGHSISYLVFNRLIILNSSPGRRKTIP---NILRQMKADKVAPHVSTFHILMKIEANDHN 180
            G     L +N   IL++    ++++     I ++M    V+P+V T++IL++      N
Sbjct: 161 YGFMPGVLSYNA--ILDAVIRTKQSVKIAEGIFKEMVESGVSPNVYTYNILIRGFCTAGN 218

Query: 181 IEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDV 240
           +E  +  + +M+R+   PN V+Y  +  A+   +L  + E +                  
Sbjct: 219 LEMGLFFFGEMERNGCLPNVVTYNTIIDAYC--KLRKIGEAF------------------ 258

Query: 241 LIILYGYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQ 300
                        L R+ A     PN+   SY + I    R  Q+    E+  EM   + 
Sbjct: 259 ------------KLLRLMALKGLNPNL--ISYNVVINGLCREGQMKETSEILEEMSKRRY 304

Query: 301 LKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFK 360
           +     +N++I+ YC  G   +A  L  EM  NG  PN +TY         + L+    K
Sbjct: 305 VPDRVTFNTLINGYCNVGNFHQALVLHAEMVKNGLSPNVVTY---------TTLINSMCK 355

Query: 361 A--LELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFV 418
           A  L   M+ +   + R   P   T  ++I+ F+++G +  A  + +E+ +  +T     
Sbjct: 356 AGNLNRAMEFLDQMRDRGLHPNGRTYTTLIDGFSQQGFLKQAYQIMKEMVENGFTPTIIT 415

Query: 419 YNTLIKAY-VKAKINDPN-LLRRMILGGARPDAETYS 453
           YN LI  + +  ++ D + LL+ MI  G  PD  +YS
Sbjct: 416 YNALINGHCILGRMEDASGLLQEMIERGFIPDVVSYS 452



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 100/438 (22%), Positives = 180/438 (41%), Gaps = 61/438 (13%)

Query: 33  INRLRKLQLNKRALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQGEKLFCCIPKD- 91
           IN L +    K   E++E + + R Y P  + ++ L+          Q   L   + K+ 
Sbjct: 280 INGLCREGQMKETSEILEEMSKRR-YVPDRVTFNTLINGYCNVGNFHQALVLHAEMVKNG 338

Query: 92  -YQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIP 150
              N + Y  L+ +    G +  ++E++ +MR  G   +   +  LI   S  G  K   
Sbjct: 339 LSPNVVTYTTLINSMCKAGNLNRAMEFLDQMRDRGLHPNGRTYTTLIDGFSQQGFLKQAY 398

Query: 151 NILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVE----PNEVSYCIL 206
            I+++M  +   P + T++ L+    N H I G M+  S + +  +E    P+ VSY  +
Sbjct: 399 QIMKEMVENGFTPTIITYNALI----NGHCILGRMEDASGLLQEMIERGFIPDVVSYSTI 454

Query: 207 ATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPN 266
            +               + LEK+        L V ++     AKG             P+
Sbjct: 455 ISGFCRN----------QELEKAFQ------LKVEMV-----AKGIS-----------PD 482

Query: 267 VRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGL 326
           V   +Y   I+   +  ++    +L+ EM S+        Y S+I+ YC  G +DKA  L
Sbjct: 483 V--ATYSSLIQGLCKQRRLGEVCDLFQEMLSLGLPPDEVTYTSLINAYCIEGDLDKALRL 540

Query: 327 LKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPW------ 380
             EM   G  P+ +TY  L  G  K +  +E  + L   +KL+  + V +   +      
Sbjct: 541 HDEMIQKGFSPDIVTYNVLINGFNKQSRTKEAKRLL---LKLLYEESVPNEITYNTLIDN 597

Query: 381 -----LETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKINDP- 434
                 ++ L++++ F  KG +  A+ + E + +  Y     VYN +I  + K    +  
Sbjct: 598 CNNLEFKSALALMKGFCMKGLMNEADRVLESMLQKGYKLNEEVYNVIIHGHSKVGNIEKA 657

Query: 435 -NLLRRMILGGARPDAET 451
            NL + M+  G  P + T
Sbjct: 658 YNLYKEMLHSGFAPHSVT 675



 Score = 50.8 bits (120), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 82/373 (21%), Positives = 156/373 (41%), Gaps = 64/373 (17%)

Query: 98  YNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGR------------ 145
           Y  L+     +G +K + + MK+M   G + + + +N LI  +   GR            
Sbjct: 381 YTTLIDGFSQQGFLKQAYQIMKEMVENGFTPTIITYNALINGHCILGRMEDASGLLQEMI 440

Query: 146 -RKTIPNILR----------------------QMKADKVAPHVSTFHILMKIEANDHNIE 182
            R  IP+++                       +M A  ++P V+T+  L++       + 
Sbjct: 441 ERGFIPDVVSYSTIISGFCRNQELEKAFQLKVEMVAKGISPDVATYSSLIQGLCKQRRLG 500

Query: 183 GLMKVYSDMKRSEVEPNEVSYCILATAHAV-ARLYTVAETYVEALEKSMTGNNWSTLDVL 241
            +  ++ +M    + P+EV+Y  L  A+ +   L      + E ++K  + +   T +VL
Sbjct: 501 EVCDLFQEMLSLGLPPDEVTYTSLINAYCIEGDLDKALRLHDEMIQKGFSPD-IVTYNVL 559

Query: 242 IILYGYLAKGKDLERIW----------------ATVQELPNVRSKSYVLAIEAFGRIAQV 285
           I  +   ++ K+ +R+                   +    N+  KS +  ++ F     +
Sbjct: 560 INGFNKQSRTKEAKRLLLKLLYEESVPNEITYNTLIDNCNNLEFKSALALMKGFCMKGLM 619

Query: 286 SRAEELWLEMQSVKQLKATEQ-YNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRH 344
           + A+ + LE    K  K  E+ YN +I  + K G I+KA  L KEM  +G  P+++T   
Sbjct: 620 NEADRV-LESMLQKGYKLNEEVYNVIIHGHSKVGNIEKAYNLYKEMLHSGFAPHSVTIMA 678

Query: 345 LALGCFKSNLVEEGFKALELGMKL-ITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENL 403
           LA      +L  EG K +EL   L  T K  R +   L   L  I I +++G++    N+
Sbjct: 679 LA-----KSLYHEG-KEVELNQLLDYTLKSCRITEAALAKVL--IGINSKEGNMDAVFNV 730

Query: 404 FEELKKANYTKYT 416
            +++  +    Y+
Sbjct: 731 LKDMALSGLLPYS 743


>gi|413937324|gb|AFW71875.1| hypothetical protein ZEAMMB73_225396 [Zea mays]
          Length = 818

 Score = 86.7 bits (213), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 87/409 (21%), Positives = 174/409 (42%), Gaps = 63/409 (15%)

Query: 94  NELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSS---PGRRKTIP 150
           +   +N L+ A   +G I  +L     M   G S S + ++  I+L+++    G R+ + 
Sbjct: 250 DTFTFNPLIRALCVRGRIPDALAVFDDMLHRGCSPSVVTYS--ILLDATCKESGYRQAM- 306

Query: 151 NILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAH 210
            +L +M+A    P + T+++L+    N+ +++  + + S++     +P+ V+Y       
Sbjct: 307 ALLDEMRAKGCEPDIVTYNVLINAMCNEGDVDEALNILSNLPSHGCKPDAVTY------T 360

Query: 211 AVARLYTVAETY--VEALEKSMTGNNWSTLDVL--------------------------- 241
            V +    +E +  VE L   MT NN +  +V                            
Sbjct: 361 PVLKSLCGSERWKEVEELLAEMTSNNCAPDEVTFNTIVTSLCQQGLVDRAIEVVDHMSEH 420

Query: 242 -----IILYGYLAKG-KDLERIWATVQELPNVRSK-------SYVLAIEAFGRIAQVSRA 288
                I+ Y  +  G  D+ R+   V+ L  ++S        +Y   ++      Q  RA
Sbjct: 421 GCVADIVTYSSILDGLCDVGRVDDAVELLSRLKSYGCKPDTIAYTTVLKGLCSTEQWERA 480

Query: 289 EELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALG 348
           EEL  EM           +N+V++  C+ G +D+A  ++++MS NGC P+ +TY      
Sbjct: 481 EELMAEMLCSDCPPDEVTFNTVVASLCQKGLVDRAIRVVEQMSENGCSPDIVTYN----- 535

Query: 349 CFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELK 408
           C    L  E    ++  M+L++  +     P + T  ++++         +AE L   + 
Sbjct: 536 CIIDGLCNE--SCIDDAMELLSDLQSCGCKPDIVTFNTLLKGLCGVDRWEDAEQLMANMM 593

Query: 409 KANYTKYTFVYNTLIKAYVKAKINDPNL--LRRMILGGARPDAETYSLL 455
           ++N       +NT+I +  +  +    +  L+ M   G  P++ TYS++
Sbjct: 594 RSNCPPDELTFNTVITSLCQKGLLTQAIETLKIMAENGCVPNSSTYSIV 642



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 78/367 (21%), Positives = 145/367 (39%), Gaps = 40/367 (10%)

Query: 123 VLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIE 182
            LG S + + +N ++      GR   I +  R +      P   TF+ L++       I 
Sbjct: 212 ALGPSATVVTYNTMVNGYCRAGR---IEDARRLINGMPFPPDTFTFNPLIRALCVRGRIP 268

Query: 183 GLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLI 242
             + V+ DM      P+ V+Y IL  A      Y  A   ++ +       +  T +VLI
Sbjct: 269 DALAVFDDMLHRGCSPSVVTYSILLDATCKESGYRQAMALLDEMRAKGCEPDIVTYNVLI 328

Query: 243 ILYGYLAKGKDLERIWATVQELPNVRSK----SYVLAIEAFGRIAQVSRAEELWLEMQSV 298
                +    D++     +  LP+   K    +Y   +++     +    EEL  EM S 
Sbjct: 329 ---NAMCNEGDVDEALNILSNLPSHGCKPDAVTYTPVLKSLCGSERWKEVEELLAEMTSN 385

Query: 299 KQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEG 358
                   +N++++  C+ G +D+A  ++  MS +GC  + +TY  +  G      V++ 
Sbjct: 386 NCAPDEVTFNTIVTSLCQQGLVDRAIEVVDHMSEHGCVADIVTYSSILDGLCDVGRVDDA 445

Query: 359 FKAL----ELGMK------------LITTKK-----------VRSSTPWLETTL-SIIEI 390
            + L      G K            L +T++           + S  P  E T  +++  
Sbjct: 446 VELLSRLKSYGCKPDTIAYTTVLKGLCSTEQWERAEELMAEMLCSDCPPDEVTFNTVVAS 505

Query: 391 FAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYV-KAKINDP-NLLRRMILGGARPD 448
             +KG V  A  + E++ +   +     YN +I     ++ I+D   LL  +   G +PD
Sbjct: 506 LCQKGLVDRAIRVVEQMSENGCSPDIVTYNCIIDGLCNESCIDDAMELLSDLQSCGCKPD 565

Query: 449 AETYSLL 455
             T++ L
Sbjct: 566 IVTFNTL 572



 Score = 65.5 bits (158), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 73/345 (21%), Positives = 135/345 (39%), Gaps = 51/345 (14%)

Query: 116 EYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIE 175
           E M +M         + FN ++      G       ++ QM  +  +P + T++ ++   
Sbjct: 482 ELMAEMLCSDCPPDEVTFNTVVASLCQKGLVDRAIRVVEQMSENGCSPDIVTYNCIIDGL 541

Query: 176 ANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNW 235
            N+  I+  M++ SD++    +P+ V++  L         +  AE  +  + +S    + 
Sbjct: 542 CNESCIDDAMELLSDLQSCGCKPDIVTFNTLLKGLCGVDRWEDAEQLMANMMRSNCPPDE 601

Query: 236 STLDVLIILY---GYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELW 292
            T + +I      G L +  +  +I A    +PN  S +Y + ++A  +  +   A EL 
Sbjct: 602 LTFNTVITSLCQKGLLTQAIETLKIMAENGCVPN--SSTYSIVVDALLKAGKAQAALELL 659

Query: 293 LEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKS 352
             M +      T  YN+VIS   K G +++A  LL+ M  NG  P+  TYR LA G  + 
Sbjct: 660 SGMTNGTPDLIT--YNTVISNLTKAGKMEEALDLLRVMVSNGLCPDTTTYRSLAYGVCR- 716

Query: 353 NLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANY 412
              E+G           T + VR                           +   ++    
Sbjct: 717 ---EDG-----------TDRAVR---------------------------MLRRVQDTGL 735

Query: 413 TKYTFVYNTLIKAYVKAKIND--PNLLRRMILGGARPDAETYSLL 455
           +  T  YN ++  + + +  D   +    M+  G  PD  TY +L
Sbjct: 736 SPDTTFYNDVLLGFCRDRRTDLAIDCFAHMVSSGCMPDESTYVIL 780



 Score = 53.1 bits (126), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 47/208 (22%), Positives = 83/208 (39%), Gaps = 18/208 (8%)

Query: 252 KDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVI 311
            D ER++A +   P+    +Y   +  + R  ++  A  L   +  +     T  +N +I
Sbjct: 204 SDAERVFAALG--PSATVVTYNTMVNGYCRAGRIEDARRL---INGMPFPPDTFTFNPLI 258

Query: 312 SVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITT 371
              C  G I  A  +  +M   GC P+ +TY  L      +   E G++     M L+  
Sbjct: 259 RALCVRGRIPDALAVFDDMLHRGCSPSVVTYSIL----LDATCKESGYRQ---AMALLDE 311

Query: 372 KKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELK----KANYTKYTFVYNTLIKAYV 427
            + +   P + T   +I     +GDV  A N+   L     K +   YT V  +L  +  
Sbjct: 312 MRAKGCEPDIVTYNVLINAMCNEGDVDEALNILSNLPSHGCKPDAVTYTPVLKSLCGSER 371

Query: 428 KAKINDPNLLRRMILGGARPDAETYSLL 455
             ++ +  LL  M      PD  T++ +
Sbjct: 372 WKEVEE--LLAEMTSNNCAPDEVTFNTI 397



 Score = 52.8 bits (125), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 73/346 (21%), Positives = 140/346 (40%), Gaps = 56/346 (16%)

Query: 44  RALEVMEWVIRERPY--RPKELDYSYLLEFTIKNHGISQGEKL----FC--CIPKDYQNE 95
           R  + +E + R + Y  +P  + Y+ +L+         + E+L     C  C P    +E
Sbjct: 441 RVDDAVELLSRLKSYGCKPDTIAYTTVLKGLCSTEQWERAEELMAEMLCSDCPP----DE 496

Query: 96  LLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQ 155
           + +N +V +   KG++  ++  +++M   G S   + +N +I    +         +L  
Sbjct: 497 VTFNTVVASLCQKGLVDRAIRVVEQMSENGCSPDIVTYNCIIDGLCNESCIDDAMELLSD 556

Query: 156 MKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATA------ 209
           +++    P + TF+ L+K        E   ++ ++M RS   P+E+++  + T+      
Sbjct: 557 LQSCGCKPDIVTFNTLLKGLCGVDRWEDAEQLMANMMRSNCPPDELTFNTVITSLCQKGL 616

Query: 210 --HAVARLYTVAE--------TY---VEALEKS---------MTGNNWSTLDVL------ 241
              A+  L  +AE        TY   V+AL K+         ++G    T D++      
Sbjct: 617 LTQAIETLKIMAENGCVPNSSTYSIVVDALLKAGKAQAALELLSGMTNGTPDLITYNTVI 676

Query: 242 --IILYGYLAKGKDLERIWATVQELPNV---RSKSYVLAIEAFGRIAQVSRAEELWLEMQ 296
             +   G + +  DL R+  +    P+    RS +Y        R     RA  +   +Q
Sbjct: 677 SNLTKAGKMEEALDLLRVMVSNGLCPDTTTYRSLAY-----GVCREDGTDRAVRMLRRVQ 731

Query: 297 SVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITY 342
                  T  YN V+  +C++   D A      M  +GC P+  TY
Sbjct: 732 DTGLSPDTTFYNDVLLGFCRDRRTDLAIDCFAHMVSSGCMPDESTY 777


>gi|297733858|emb|CBI15105.3| unnamed protein product [Vitis vinifera]
          Length = 627

 Score = 86.7 bits (213), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 75/315 (23%), Positives = 129/315 (40%), Gaps = 8/315 (2%)

Query: 116 EYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIE 175
           E +K+M   G       +N L+  ++  G  K    + RQM+     P+ +T+ IL+ + 
Sbjct: 66  ELLKEMESGGSFPDITSYNVLLEAHAQSGSIKEAMGVFRQMQGAGCVPNAATYSILLNLY 125

Query: 176 ANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNW 235
                 + +  ++ +MK S  EPN  +Y IL         +    T    + +     N 
Sbjct: 126 GRHGRYDDVRDLFLEMKVSNTEPNAATYNILINVFGEGGYFKEVVTLFHDMVEENVEPNM 185

Query: 236 STLDVLIILYGYLAKGKDLERIWATVQELPNV-RSKSYVLAIEAFGRIAQVSRAEELWLE 294
            T + LI   G     +D ++I   + E   V  SK+Y   IEA+G+ A    A   +  
Sbjct: 186 ETYEGLIFACGKGGLHEDAKKILLHMNEKGVVPSSKAYTGVIEAYGQAALYEEALVAFNT 245

Query: 295 MQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNL 354
           M  V      E YNS+I ++ K G   ++  +L +M  +G   N  T+  +     +   
Sbjct: 246 MNEVGSKPTVETYNSLIQMFAKGGLYKESEAILLKMGQSGVARNRDTFNGVIEAFRQGGQ 305

Query: 355 VEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTK 414
            EE  KA       +  +K R   P  +T  +++ ++   G V  +E  F E+K      
Sbjct: 306 FEEAIKA------YVEMEKARCD-PDEQTLEAVLSVYCFAGLVEESEEQFGEIKALGILP 358

Query: 415 YTFVYNTLIKAYVKA 429
               Y  ++  Y KA
Sbjct: 359 SVMCYCMMLAVYAKA 373



 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 56/208 (26%), Positives = 98/208 (47%), Gaps = 14/208 (6%)

Query: 251 GKDLERIWATVQE---LPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQY 307
           G + E ++ T+ E   LP++ + SY+  +E FG++ ++ +  EL  EM+S         Y
Sbjct: 26  GDEAEMVFRTMNEGGILPDITTYSYL--VETFGKLNRLEKVSELLKEMESGGSFPDITSY 83

Query: 308 NSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMK 367
           N ++  + ++G I +A G+ ++M   GC PNA TY  L L  +  +   +  + L L MK
Sbjct: 84  NVLLEAHAQSGSIKEAMGVFRQMQGAGCVPNAATYSIL-LNLYGRHGRYDDVRDLFLEMK 142

Query: 368 LITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYV 427
           +  T+      P   T   +I +F E G       LF ++ + N       Y  LI A  
Sbjct: 143 VSNTE------PNAATYNILINVFGEGGYFKEVVTLFHDMVEENVEPNMETYEGLIFACG 196

Query: 428 KAKINDP--NLLRRMILGGARPDAETYS 453
           K  +++    +L  M   G  P ++ Y+
Sbjct: 197 KGGLHEDAKKILLHMNEKGVVPSSKAYT 224



 Score = 64.7 bits (156), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 65/309 (21%), Positives = 128/309 (41%), Gaps = 12/309 (3%)

Query: 121 MRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHN 180
           MR  G     + +N L+   +  G       + R M    + P ++T+  L++     + 
Sbjct: 1   MRHEGIQADIVTYNTLLSACARRGLGDEAEMVFRTMNEGGILPDITTYSYLVETFGKLNR 60

Query: 181 IEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDV 240
           +E + ++  +M+     P+  SY +L  AHA +     A      ++ +    N +T  +
Sbjct: 61  LEKVSELLKEMESGGSFPDITSYNVLLEAHAQSGSIKEAMGVFRQMQGAGCVPNAATYSI 120

Query: 241 LIILYGYLAKGKDLERIWATVQ---ELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQS 297
           L+ LYG   +  D+  ++  ++     PN  + +Y + I  FG          L+ +M  
Sbjct: 121 LLNLYGRHGRYDDVRDLFLEMKVSNTEPN--AATYNILINVFGEGGYFKEVVTLFHDMVE 178

Query: 298 VKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEE 357
                  E Y  +I    K G  + A  +L  M+  G  P++  Y  +     ++ L EE
Sbjct: 179 ENVEPNMETYEGLIFACGKGGLHEDAKKILLHMNEKGVVPSSKAYTGVIEAYGQAALYEE 238

Query: 358 GFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTF 417
              A         T     S P +ET  S+I++FA+ G    +E +  ++ ++   +   
Sbjct: 239 ALVAF-------NTMNEVGSKPTVETYNSLIQMFAKGGLYKESEAILLKMGQSGVARNRD 291

Query: 418 VYNTLIKAY 426
            +N +I+A+
Sbjct: 292 TFNGVIEAF 300



 Score = 39.3 bits (90), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 65/309 (21%), Positives = 118/309 (38%), Gaps = 75/309 (24%)

Query: 98  YNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMK 157
           YN L+ A    G IK ++   ++M+  G   +   ++ L+ L    GR   + ++  +MK
Sbjct: 83  YNVLLEAHAQSGSIKEAMGVFRQMQGAGCVPNAATYSILLNLYGRHGRYDDVRDLFLEMK 142

Query: 158 ADKVAPHVSTFHILMKI----------------------EANDHNIEGLM---------- 185
                P+ +T++IL+ +                      E N    EGL+          
Sbjct: 143 VSNTEPNAATYNILINVFGEGGYFKEVVTLFHDMVEENVEPNMETYEGLIFACGKGGLHE 202

Query: 186 ---KVYSDMKRSEVEPNEVSYCILATAHAVARLYTVA----------------ETYVEAL 226
              K+   M    V P+  +Y  +  A+  A LY  A                ETY   +
Sbjct: 203 DAKKILLHMNEKGVVPSSKAYTGVIEAYGQAALYEEALVAFNTMNEVGSKPTVETYNSLI 262

Query: 227 EKSMTGNNWSTLDVLIILYGY--LAKGKDL---------------ERIWATVQEL----- 264
           +    G  +   + +++  G   +A+ +D                E I A V+       
Sbjct: 263 QMFAKGGLYKESEAILLKMGQSGVARNRDTFNGVIEAFRQGGQFEEAIKAYVEMEKARCD 322

Query: 265 PNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKAS 324
           P+ ++   VL++  F  +  V  +EE + E++++  L +   Y  +++VY K    D A 
Sbjct: 323 PDEQTLEAVLSVYCFAGL--VEESEEQFGEIKALGILPSVMCYCMMLAVYAKADRWDDAH 380

Query: 325 GLLKEMSMN 333
            LL EM  N
Sbjct: 381 QLLDEMFTN 389


>gi|6630464|gb|AAF19552.1|AC007190_20 F23N19.4 [Arabidopsis thaliana]
          Length = 1244

 Score = 86.7 bits (213), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 99/453 (21%), Positives = 197/453 (43%), Gaps = 26/453 (5%)

Query: 15  QSWMREGFPVHRGEIFHSIN--RLRKLQLNKRALEVMEWVIRERPYRPKELDYSYLLEFT 72
           + W+R    V  G++   ++  RLR ++LN  A+++   +++ RP+ P  +D++ LL   
Sbjct: 141 RCWVRASSSVSGGDLRERLSKTRLRDIKLND-AIDLFSDMVKSRPF-PSIVDFNRLLSAI 198

Query: 73  IK----NHGISQGEKLFCCIPKDYQNELLYNNLVIACLDKGV-IKLSLEYMKKMRVLGHS 127
           +K    +  IS G+K+        +N+L   N+VI C      + L+L  + KM  LG+ 
Sbjct: 199 VKLKKYDVVISLGKKMEVL---GIRNDLYTFNIVINCFCCCFQVSLALSILGKMLKLGYE 255

Query: 128 ISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKV 187
              +    L+       R     +++ +M      P +  ++ ++        +      
Sbjct: 256 PDRVTIGSLVNGFCRRNRVSDAVSLVDKMVEIGYKPDIVAYNAIIDSLCKTKRVNDAFDF 315

Query: 188 YSDMKRSEVEPNEVSYCILATAHA-VARLYTVAETYVEALEKSMTGN--NWSTLDVLIIL 244
           + +++R  + PN V+Y  L       +R    A    + ++K +T N   +S L    + 
Sbjct: 316 FKEIERKGIRPNVVTYTALVNGLCNSSRWSDAARLLSDMIKKKITPNVITYSALLDAFVK 375

Query: 245 YGYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKAT 304
            G + + K+L      +   P++   +Y   I       ++  A +++  M S   L   
Sbjct: 376 NGKVLEAKELFEEMVRMSIDPDI--VTYSSLINGLCLHDRIDEANQMFDLMVSKGCLADV 433

Query: 305 EQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALEL 364
             YN++I+ +CK   ++    L +EMS  G   N +TY  L  G F++  V+   KA E 
Sbjct: 434 VSYNTLINGFCKAKRVEDGMKLFREMSQRGLVSNTVTYNTLIQGFFQAGDVD---KAQE- 489

Query: 365 GMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIK 424
                +       +P + T   ++    + G++  A  +FE+++K         Y T+I+
Sbjct: 490 ---FFSQMDFFGISPDIWTYNILLGGLCDNGELEKALVIFEDMQKREMDLDIVTYTTVIR 546

Query: 425 AYVK-AKINDP-NLLRRMILGGARPDAETYSLL 455
              K  K+ +  +L   + L G +PD  TY+ +
Sbjct: 547 GMCKTGKVEEAWSLFCSLSLKGLKPDIVTYTTM 579



 Score = 78.2 bits (191), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 82/365 (22%), Positives = 156/365 (42%), Gaps = 14/365 (3%)

Query: 96   LLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQ 155
            L+YN ++        +  +L   K+M   G   + + ++ LI    + GR      +L  
Sbjct: 871  LIYNTIIDGLCKYKHMDDALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSD 930

Query: 156  MKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARL 215
            M   K+ P V TF  L+     +  +    K+Y +M +  ++P+ V+Y  L     +   
Sbjct: 931  MIERKINPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDR 990

Query: 216  YTVAETYVEALEKSMTGNNWSTLDVLI---ILYGYLAKGKDLERIWATVQELPNVRSKSY 272
               A+   E +       +  T + LI     Y  + +G ++ R  +    + N  + +Y
Sbjct: 991  LDEAKQMFEFMVSKHCFPDVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGN--TVTY 1048

Query: 273  VLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSM 332
             + I+   +      A+E++ EM S         YN+++   CKNG ++KA  + + +  
Sbjct: 1049 NILIQGLFQAGDCDMAQEIFKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQR 1108

Query: 333  NGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFA 392
            +  +P   TY  +  G  K+  VE+G+        L     ++   P +    ++I  F 
Sbjct: 1109 SKMEPTIYTYNIMIEGMCKAGKVEDGWD-------LFCNLSLKGVKPDVVAYNTMISGFC 1161

Query: 393  EKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKINDPN--LLRRMILGGARPDAE 450
             KG    A+ LF+E+K+      +  YNTLI+A ++    + +  L++ M   G   DA 
Sbjct: 1162 RKGSKEEADALFKEMKEDGTLPNSGCYNTLIRARLRDGDREASAELIKEMRSCGFAGDAS 1221

Query: 451  TYSLL 455
            T  L+
Sbjct: 1222 TIGLV 1226



 Score = 68.2 bits (165), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 51/187 (27%), Positives = 83/187 (44%), Gaps = 9/187 (4%)

Query: 271 SYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEM 330
           +Y + I  F R +Q+  A  +  +M  +         +S+++ YC +  I +A  L+ +M
Sbjct: 732 TYSILINCFCRRSQLPLALAVLGKMMKLGYEPNIVTLSSLLNGYCHSKRISEAVALVDQM 791

Query: 331 SMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEI 390
            + G +PN +T+  L  G F  N   E        M LI     +   P L T   ++  
Sbjct: 792 FVTGYQPNTVTFNTLIHGLFLHNKASE-------AMALIDRMVAKGCQPDLVTYGVVVNG 844

Query: 391 FAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKINDP--NLLRRMILGGARPD 448
             ++GD   A NL  ++++        +YNT+I    K K  D   NL + M   G RP+
Sbjct: 845 LCKRGDTDLAFNLLNKMEQGKLEPGVLIYNTIIDGLCKYKHMDDALNLFKEMETKGIRPN 904

Query: 449 AETYSLL 455
             TYS L
Sbjct: 905 VVTYSSL 911



 Score = 41.2 bits (95), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 67/351 (19%), Positives = 137/351 (39%), Gaps = 42/351 (11%)

Query: 98  YNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLI--ILNSSPGRRKTIPNILRQ 155
           YN ++ +      +  + ++ K++   G   + + +  L+  + NSS  R      +L  
Sbjct: 296 YNAIIDSLCKTKRVNDAFDFFKEIERKGIRPNVVTYTALVNGLCNSS--RWSDAARLLSD 353

Query: 156 MKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARL 215
           M   K+ P+V T+  L+     +  +    +++ +M R  ++P+ V+Y  L     +   
Sbjct: 354 MIKKKITPNVITYSALLDAFVKNGKVLEAKELFEEMVRMSIDPDIVTYSSLINGLCLHDR 413

Query: 216 YTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSK-SYVL 274
              A    + +       +  + + LI  +    + +D  +++  + +   V +  +Y  
Sbjct: 414 IDEANQMFDLMVSKGCLADVVSYNTLINGFCKAKRVEDGMKLFREMSQRGLVSNTVTYNT 473

Query: 275 AIEAFGRIAQVSRAEELWLEMQSV-----------------------KQLKATEQ----- 306
            I+ F +   V +A+E + +M                          K L   E      
Sbjct: 474 LIQGFFQAGDVDKAQEFFSQMDFFGISPDIWTYNILLGGLCDNGELEKALVIFEDMQKRE 533

Query: 307 -------YNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGF 359
                  Y +VI   CK G +++A  L   +S+ G KP+ +TY  +  G     L+ E  
Sbjct: 534 MDLDIVTYTTVIRGMCKTGKVEEAWSLFCSLSLKGLKPDIVTYTTMMSGLCTKGLLHE-V 592

Query: 360 KALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKA 410
           +AL   MK     K   +    + TLS  E+  +    G A +L +++K  
Sbjct: 593 EALYTKMKQEGLMKNDCTLSDGDITLS-AELIKKMLSCGYAPSLLKDIKSG 642


>gi|297802850|ref|XP_002869309.1| hypothetical protein ARALYDRAFT_491552 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297315145|gb|EFH45568.1| hypothetical protein ARALYDRAFT_491552 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 1114

 Score = 86.7 bits (213), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 102/415 (24%), Positives = 178/415 (42%), Gaps = 23/415 (5%)

Query: 53  IRERPYRPKELDYSYLLEFTIKNHGISQGEKLF------CCIPKDYQNELLYNNLVIACL 106
           ++E   +P  + Y+ LL    KN  I +  +LF       C P    N + +N L     
Sbjct: 566 MKEMKLKPTVVTYNTLLAGLGKNGKIQEAIELFEGMVQKGCPP----NTITFNTLFDCLC 621

Query: 107 DKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVS 166
               + L+L+ + KM  +G       +N +I      G+ K       QMK   V P   
Sbjct: 622 KNDEVTLALKMLFKMMDMGCVPDVFTYNTIIFGLVKNGQVKEAMCFFHQMKK-LVYPDFV 680

Query: 167 TFHILMKIEANDHNIEGLMKVYSDMKRSEVE-PNEVSYCILATAHAVARLYTVAETYVEA 225
           T   L+        IE   K+ ++   S  + P  + +  L  +         A ++ E 
Sbjct: 681 TLCTLLPGVVKAGLIEDAYKIIANFLYSCADQPANLFWEDLMGSILAEAGIDNAVSFSER 740

Query: 226 LEKSMTGNNWSTLDVLIILYGYLAKGKDLER-IWATVQELPNVRSK--SYVLAIEAFGRI 282
           L  +    +  ++ V II Y +        R ++    +   V+ K  +Y L I      
Sbjct: 741 LVANGICRDGDSILVPIIRYSFKHNNASGARMLFEKFTKDLGVQPKLPTYNLLIGGLLEA 800

Query: 283 AQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITY 342
             +  A++++L++++   +     YN ++  Y K+G ID+   + KEMS + C+PN IT+
Sbjct: 801 DMIEIAQDVFLQVKNTGCIPDVATYNFLLDAYGKSGKIDELFEIYKEMSAHECEPNTITH 860

Query: 343 RHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAEN 402
             +  G  K+  V++   AL+L   L++    R  +P   T   +I+  ++ G +  A+ 
Sbjct: 861 NIVISGLVKAGNVDD---ALDLYYDLMSD---RDFSPTACTYGPLIDGLSKSGRLYEAKQ 914

Query: 403 LFEELKKANYTKYTFVYNTLIKAYVKAKINDP--NLLRRMILGGARPDAETYSLL 455
           LFE +          +YN LI  + KA   D    L +RM+  G RPD +TYS+L
Sbjct: 915 LFEGMSDYGCRPNCAIYNILINGFGKAGEADAACALFKRMVKEGVRPDLKTYSVL 969



 Score = 75.5 bits (184), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 75/313 (23%), Positives = 132/313 (42%), Gaps = 18/313 (5%)

Query: 151  NILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAH 210
            ++  Q+K     P V+T++ L+        I+ L ++Y +M   E EPN +++ I+ +  
Sbjct: 808  DVFLQVKNTGCIPDVATYNFLLDAYGKSGKIDELFEIYKEMSAHECEPNTITHNIVISGL 867

Query: 211  AVA-RLYTVAETYVEALEK---SMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPN 266
              A  +    + Y + +     S T   +  L   +   G L + K L    +     PN
Sbjct: 868  VKAGNVDDALDLYYDLMSDRDFSPTACTYGPLIDGLSKSGRLYEAKQLFEGMSDYGCRPN 927

Query: 267  VRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGL 326
                 Y + I  FG+  +   A  L+  M         + Y+ ++   C  G +D+    
Sbjct: 928  C--AIYNILINGFGKAGEADAACALFKRMVKEGVRPDLKTYSVLVDCLCMVGRVDEGLHY 985

Query: 327  LKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLS 386
             +E+  +G  P+ + Y  +  G  K + +EE   AL L  ++   KK R  TP L T  S
Sbjct: 986  FRELKESGLNPDVVCYNLIINGLGKFHRLEE---ALVLFNEM---KKSRGITPDLYTYNS 1039

Query: 387  IIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKINDPN----LLRRMIL 442
            +I      G V  A  ++ E+++A      F +N LI+ Y  +    P     + + M+ 
Sbjct: 1040 LILNLGIAGMVEEAGKIYNEIQRAGLEPNVFTFNALIRGYSLS--GKPEHAYAVYQTMVT 1097

Query: 443  GGARPDAETYSLL 455
            GG  P+  TY  L
Sbjct: 1098 GGFSPNTGTYEQL 1110



 Score = 68.2 bits (165), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 80/388 (20%), Positives = 161/388 (41%), Gaps = 51/388 (13%)

Query: 109 GVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTF 168
           G I  + E +K+M   G     + +  LI    +  +      +  +MK  +  P   T+
Sbjct: 274 GKINEAYEILKRMDDEGCGPDVVTYTVLIDALCTARKLDCAKEVFAKMKTGRHKPDRVTY 333

Query: 169 HILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEK 228
             L+   +++ +++ + + +S+M++    P+ V++ IL  A   A  +  A   ++ +  
Sbjct: 334 ITLLDRFSDNRDLDSVNQFWSEMEKDGHVPDVVTFTILVDALCKAGNFGEAFAKLDVMRD 393

Query: 229 SMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELP-NVRSKSYVLAIEAFGR------ 281
                N  T + LI     + +  D   I+  ++ L     + +Y++ I+ +G+      
Sbjct: 394 QGILPNLHTYNTLICGLLRVHRLDDALEIFDNMESLGVKPTAYTYIVFIDYYGKSGDSVS 453

Query: 282 --------------------------IAQVSR---AEELWLEMQSVKQLKATEQYNSVIS 312
                                     +A+  R   A++++  ++ +  +  +  YN ++ 
Sbjct: 454 ALETFEKMKTKGIAPNIVACNASLYSLAKAGRDREAKQIFYGLKDIGLVPDSVTYNMMMK 513

Query: 313 VYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTK 372
            Y K G ID+A  LL EM  N C+P+ I    L    +K++ V+E +K   + MK +  K
Sbjct: 514 CYSKVGEIDEAIKLLSEMVENCCEPDVIVVNSLINTLYKADRVDEAWKMF-MRMKEMKLK 572

Query: 373 KVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKIN 432
                 P + T  +++    + G +  A  LFE + +      T  +NTL     K   N
Sbjct: 573 ------PTVVTYNTLLAGLGKNGKIQEAIELFEGMVQKGCPPNTITFNTLFDCLCK---N 623

Query: 433 DP-----NLLRRMILGGARPDAETYSLL 455
           D       +L +M+  G  PD  TY+ +
Sbjct: 624 DEVTLALKMLFKMMDMGCVPDVFTYNTI 651



 Score = 52.8 bits (125), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 79/368 (21%), Positives = 144/368 (39%), Gaps = 24/368 (6%)

Query: 98  YNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMK 157
           Y++L++    +  I+  +  +K+M  LG   +   F   I +    G+      IL++M 
Sbjct: 228 YSSLMVGLGKRRDIESVMGLLKEMETLGLKPNVYTFTICIRVLGRAGKINEAYEILKRMD 287

Query: 158 ADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYT 217
            +   P V T+ +L+        ++   +V++ MK    +P+ V+Y  L    +  R   
Sbjct: 288 DEGCGPDVVTYTVLIDALCTARKLDCAKEVFAKMKTGRHKPDRVTYITLLDRFSDNRDLD 347

Query: 218 VAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQE------LPNVRSKS 271
               +   +EK     +  T  +L+     L K  +    +A +        LPN+   +
Sbjct: 348 SVNQFWSEMEKDGHVPDVVTFTILV---DALCKAGNFGEAFAKLDVMRDQGILPNLH--T 402

Query: 272 YVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGL--LKE 329
           Y   I    R+ ++  A E++  M+S+        Y   I  Y K+G  D  S L   ++
Sbjct: 403 YNTLICGLLRVHRLDDALEIFDNMESLGVKPTAYTYIVFIDYYGKSG--DSVSALETFEK 460

Query: 330 MSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIE 389
           M   G  PN +          K+    E  K +  G+K I         P   T   +++
Sbjct: 461 MKTKGIAPNIVACNASLYSLAKAGRDREA-KQIFYGLKDI------GLVPDSVTYNMMMK 513

Query: 390 IFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKINDP--NLLRRMILGGARP 447
            +++ G++  A  L  E+ +        V N+LI    KA   D    +  RM     +P
Sbjct: 514 CYSKVGEIDEAIKLLSEMVENCCEPDVIVVNSLINTLYKADRVDEAWKMFMRMKEMKLKP 573

Query: 448 DAETYSLL 455
              TY+ L
Sbjct: 574 TVVTYNTL 581



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 57/270 (21%), Positives = 108/270 (40%), Gaps = 19/270 (7%)

Query: 98  YNNLVIACLDKGVIKLSLEYMKKMRVLG---HSISYLVFNRLIILNSSPGRRKTIPNILR 154
           YN L+   L    +  +LE    M  LG    + +Y+VF   I      G   +      
Sbjct: 403 YNTLICGLLRVHRLDDALEIFDNMESLGVKPTAYTYIVF---IDYYGKSGDSVSALETFE 459

Query: 155 QMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHA-VA 213
           +MK   +AP++   +  +   A         +++  +K   + P+ V+Y ++   ++ V 
Sbjct: 460 KMKTKGIAPNIVACNASLYSLAKAGRDREAKQIFYGLKDIGLVPDSVTYNMMMKCYSKVG 519

Query: 214 RLYTVAETYVEALEKSMTGNNWSTLDVLII--LYGYLAKGKDLERIWATVQELPNVRSKS 271
            +    +   E +E      N    DV+++  L   L K   ++  W     +  ++ K 
Sbjct: 520 EIDEAIKLLSEMVE------NCCEPDVIVVNSLINTLYKADRVDEAWKMFMRMKEMKLKP 573

Query: 272 YVLA----IEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLL 327
            V+     +   G+  ++  A EL+  M        T  +N++    CKN  +  A  +L
Sbjct: 574 TVVTYNTLLAGLGKNGKIQEAIELFEGMVQKGCPPNTITFNTLFDCLCKNDEVTLALKML 633

Query: 328 KEMSMNGCKPNAITYRHLALGCFKSNLVEE 357
            +M   GC P+  TY  +  G  K+  V+E
Sbjct: 634 FKMMDMGCVPDVFTYNTIIFGLVKNGQVKE 663



 Score = 41.6 bits (96), Expect = 0.94,   Method: Compositional matrix adjust.
 Identities = 31/160 (19%), Positives = 66/160 (41%), Gaps = 7/160 (4%)

Query: 270 KSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKE 329
           ++Y   +   G+   +     L  EM+++        +   I V  + G I++A  +LK 
Sbjct: 226 QTYSSLMVGLGKRRDIESVMGLLKEMETLGLKPNVYTFTICIRVLGRAGKINEAYEILKR 285

Query: 330 MSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIE 389
           M   GC P+ +TY  L      +       + L+   ++    K     P   T +++++
Sbjct: 286 MDDEGCGPDVVTYTVLIDALCTA-------RKLDCAKEVFAKMKTGRHKPDRVTYITLLD 338

Query: 390 IFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKA 429
            F++  D+ +    + E++K  +      +  L+ A  KA
Sbjct: 339 RFSDNRDLDSVNQFWSEMEKDGHVPDVVTFTILVDALCKA 378



 Score = 38.5 bits (88), Expect = 8.2,   Method: Compositional matrix adjust.
 Identities = 36/159 (22%), Positives = 64/159 (40%), Gaps = 11/159 (6%)

Query: 306 QYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELG 365
            YN +I +  K+ F  +A  + + M ++G +P+  TY  L +G  K        + +E  
Sbjct: 192 SYNGLIHLLLKSRFCTEAMEVYRRMILDGFRPSLQTYSSLMVGLGKR-------RDIESV 244

Query: 366 MKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKA 425
           M L+   +     P + T    I +    G +  A  + + +           Y  LI A
Sbjct: 245 MGLLKEMETLGLKPNVYTFTICIRVLGRAGKINEAYEILKRMDDEGCGPDVVTYTVLIDA 304

Query: 426 YVKAKIND--PNLLRRMILGGARPDAETYSLLKLAEQFQ 462
              A+  D    +  +M  G  +PD  TY  + L ++F 
Sbjct: 305 LCTARKLDCAKEVFAKMKTGRHKPDRVTY--ITLLDRFS 341


>gi|302779738|ref|XP_002971644.1| hypothetical protein SELMODRAFT_412145 [Selaginella moellendorffii]
 gi|300160776|gb|EFJ27393.1| hypothetical protein SELMODRAFT_412145 [Selaginella moellendorffii]
          Length = 1056

 Score = 86.7 bits (213), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 95/452 (21%), Positives = 191/452 (42%), Gaps = 56/452 (12%)

Query: 13  AFQSWMREGFPVHRGEIFHSINRLRKLQLNKRALEVMEWVIRERPYRPKELDYSYLLEFT 72
           A + WMR G  +    +      L K +     ++++E +  ER  +  ++   + +   
Sbjct: 130 AVKKWMRRGNCLSSDVLSTIYFWLMKRKRYTEIMKLLEGIRCERLVKFTDMHCVWAIGVI 189

Query: 73  IKNHGISQGEKLFCCIPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLV 132
            +  G+++ E+ +  +P+  + + +   L ++   +  +  + ++++K++V  H+   L 
Sbjct: 190 SRRRGMAKAERFYDSLPEKLRTDRVTVGLFLSVAKENGLAKAEQWLEKIQV--HTTDILD 247

Query: 133 FNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMK 192
              ++ LN    +   +  +  +M+   + P V T+ +L+K +  D    GL        
Sbjct: 248 VMMVLYLNRD--KHHKVVEMFERMRGLGLQPSVRTYLMLLKCK--DRGAGGL-------- 295

Query: 193 RSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGK 252
                       I   A    +   V +  +  L  +M             +YGY+ K  
Sbjct: 296 ----------NAIEGEALGAVQTMDVEDPPLRTLNDAME------------VYGYVGKQD 333

Query: 253 DLERIWATVQEL-PNVRSKSYVLAIEAFGRIAQVSRAEELWLEM-QSVKQLKATEQ--YN 308
            +E +W +++    ++   SY  AI A G + +V++A  L  E+     +    EQ  + 
Sbjct: 334 GIEELWRSLKRTRSDIHQSSYFSAITALGLVGEVAKARALCKELLAGSDEFTKFEQNPHA 393

Query: 309 SVISVYCKNGFIDKASGLL--KEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGM 366
            ++ VY +NG ++KA  +L  KE+  +   P    Y  L  G   +N + E  K L+ G+
Sbjct: 394 LMLEVYARNGMMEKAERILQSKELDRDSFAP----YNSLIQGYMAANNISEALKKLDDGL 449

Query: 367 KLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKY--TFVYNTLIK 424
             +  K +R      +T + ++ ++A  GDV  A+ L        YTK     VYN  +K
Sbjct: 450 AAVPAKSIRLQ---YKTMMVLLPVYAANGDVEGAKELMR-----RYTKLGDAGVYNEFLK 501

Query: 425 AYVKAKINDPNLLRRMILGGARPDAETYSLLK 456
            Y+  K +    + RM   G   + ET  LL+
Sbjct: 502 VYISRKRHPREFMERMQANGVEGNRETEKLLE 533



 Score = 80.9 bits (198), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 100/451 (22%), Positives = 185/451 (41%), Gaps = 52/451 (11%)

Query: 13   AFQSWMREGFPVHRGEIFHSINRLRKLQLNKRALEVMEWVIRERPYRPKELDYSYLLEFT 72
              + W+REG       +     RL K +  K  L+++  +  E   +  +  Y + +  T
Sbjct: 625  GLKEWVREGNTFSSSLLSKVYYRLAKRKCYKEILQLLRGIREENMVQTTQTHYIWEMAIT 684

Query: 73   IKNHGISQGEKLFC-CIPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYL 131
             +       E  +   IP  +++E +   L+ +   +  +  S +++++M VL   +   
Sbjct: 685  CRQQSTYAAEIFYNDIIPARFRSEEVTAALIFSLAKRNALAKSEKWIEQMTVLSTDL--- 741

Query: 132  VFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDM 191
              N L+ L     +   +     +M    + P ++T+  LM +   D    GL  +    
Sbjct: 742  -LNMLMALYLDRDKHDKVLETYERMCKLGLEPSINTY--LMLLTYKDKAGGGLEGI---- 794

Query: 192  KRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKG 251
               E E  E    I   A               AL K++      T++V     GYL K 
Sbjct: 795  ---EREAEEAVKNIDLDA---------------ALRKTLQ----ETMEVC----GYLGKA 828

Query: 252  KDLERIWATVQELPNVRS---KSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYN 308
              +E IW+ ++ L   ++    SY+ A+ AFGR+  V RAE+++ E+ +    K+    +
Sbjct: 829  ASVEDIWSRLKSLSGTQACDQSSYLSAMAAFGRVKNVERAEQVFEELLAQDLSKSLANPH 888

Query: 309  SV-ISVYCKNGFIDKASGLLKE-MSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGM 366
            +V + VY  NG + KA  +L+  ++     P    Y  L  G   S   E     L+ G+
Sbjct: 889  AVMVEVYVSNGLMAKAEHVLRHRLNEAVFSP----YNSLVRGYIASGDTELALARLKEGV 944

Query: 367  KLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAY 426
              I  + +R   P  +T ++++ +FA + D+  AE +    +   +     VYN L+K Y
Sbjct: 945  AAIPARHIR---PAYKTMMALLPVFAARRDIDGAERIMFHYR---FIGDATVYNELLKVY 998

Query: 427  VKAKINDPNLLRRMILGGARPDAETYSLLKL 457
            V   +   +   RM       D  T  L ++
Sbjct: 999  VACNVFPLDFRNRMKGSDVEGDETTEELFEM 1029


>gi|145336953|ref|NP_176455.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806497|sp|Q3ECK2.2|PPR92_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g62680, mitochondrial; Flags: Precursor
 gi|332195872|gb|AEE33993.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 548

 Score = 86.7 bits (213), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 99/453 (21%), Positives = 197/453 (43%), Gaps = 26/453 (5%)

Query: 15  QSWMREGFPVHRGEIFHSIN--RLRKLQLNKRALEVMEWVIRERPYRPKELDYSYLLEFT 72
           + W+R    V  G++   ++  RLR ++LN  A+++   +++ RP+ P  +D++ LL   
Sbjct: 38  RCWVRASSSVSGGDLRERLSKTRLRDIKLND-AIDLFSDMVKSRPF-PSIVDFNRLLSAI 95

Query: 73  IK----NHGISQGEKLFCCIPKDYQNELLYNNLVIACLDKGV-IKLSLEYMKKMRVLGHS 127
           +K    +  IS G+K+        +N+L   N+VI C      + L+L  + KM  LG+ 
Sbjct: 96  VKLKKYDVVISLGKKME---VLGIRNDLYTFNIVINCFCCCFQVSLALSILGKMLKLGYE 152

Query: 128 ISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKV 187
              +    L+       R     +++ +M      P +  ++ ++        +      
Sbjct: 153 PDRVTIGSLVNGFCRRNRVSDAVSLVDKMVEIGYKPDIVAYNAIIDSLCKTKRVNDAFDF 212

Query: 188 YSDMKRSEVEPNEVSYCILATAHA-VARLYTVAETYVEALEKSMTGN--NWSTLDVLIIL 244
           + +++R  + PN V+Y  L       +R    A    + ++K +T N   +S L    + 
Sbjct: 213 FKEIERKGIRPNVVTYTALVNGLCNSSRWSDAARLLSDMIKKKITPNVITYSALLDAFVK 272

Query: 245 YGYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKAT 304
            G + + K+L      +   P++   +Y   I       ++  A +++  M S   L   
Sbjct: 273 NGKVLEAKELFEEMVRMSIDPDI--VTYSSLINGLCLHDRIDEANQMFDLMVSKGCLADV 330

Query: 305 EQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALEL 364
             YN++I+ +CK   ++    L +EMS  G   N +TY  L  G F++  V+   KA E 
Sbjct: 331 VSYNTLINGFCKAKRVEDGMKLFREMSQRGLVSNTVTYNTLIQGFFQAGDVD---KAQE- 386

Query: 365 GMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIK 424
                +       +P + T   ++    + G++  A  +FE+++K         Y T+I+
Sbjct: 387 ---FFSQMDFFGISPDIWTYNILLGGLCDNGELEKALVIFEDMQKREMDLDIVTYTTVIR 443

Query: 425 AYVK-AKINDP-NLLRRMILGGARPDAETYSLL 455
              K  K+ +  +L   + L G +PD  TY+ +
Sbjct: 444 GMCKTGKVEEAWSLFCSLSLKGLKPDIVTYTTM 476



 Score = 40.8 bits (94), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 71/357 (19%), Positives = 141/357 (39%), Gaps = 54/357 (15%)

Query: 98  YNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLI--ILNSSPGRRKTIPNILRQ 155
           YN ++ +      +  + ++ K++   G   + + +  L+  + NSS  R      +L  
Sbjct: 193 YNAIIDSLCKTKRVNDAFDFFKEIERKGIRPNVVTYTALVNGLCNSS--RWSDAARLLSD 250

Query: 156 MKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAV-AR 214
           M   K+ P+V T+  L+     +  +    +++ +M R  ++P+ V+Y  L     +  R
Sbjct: 251 MIKKKITPNVITYSALLDAFVKNGKVLEAKELFEEMVRMSIDPDIVTYSSLINGLCLHDR 310

Query: 215 LYTVAETYVEALEKSMTGN--NWSTLDVLIILYGYLAKGKDLERIWATVQELPN----VR 268
           +    + +   + K    +  +++TL     + G+  K K +E      +E+        
Sbjct: 311 IDEANQMFDLMVSKGCLADVVSYNTL-----INGF-CKAKRVEDGMKLFREMSQRGLVSN 364

Query: 269 SKSYVLAIEAFGRIAQVSRAEELWLEMQSV-----------------------KQLKATE 305
           + +Y   I+ F +   V +A+E + +M                          K L   E
Sbjct: 365 TVTYNTLIQGFFQAGDVDKAQEFFSQMDFFGISPDIWTYNILLGGLCDNGELEKALVIFE 424

Query: 306 Q------------YNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSN 353
                        Y +VI   CK G +++A  L   +S+ G KP+ +TY  +  G     
Sbjct: 425 DMQKREMDLDIVTYTTVIRGMCKTGKVEEAWSLFCSLSLKGLKPDIVTYTTMMSGLCTKG 484

Query: 354 LVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKA 410
           L+ E  +AL   MK     K   +    + TLS  E+  +    G A +L +++K  
Sbjct: 485 LLHE-VEALYTKMKQEGLMKNDCTLSDGDITLS-AELIKKMLSCGYAPSLLKDIKSG 539


>gi|359477372|ref|XP_002280003.2| PREDICTED: pentatricopeptide repeat-containing protein At3g23020
           [Vitis vinifera]
          Length = 881

 Score = 86.7 bits (213), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 92/369 (24%), Positives = 166/369 (44%), Gaps = 23/369 (6%)

Query: 98  YNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMK 157
           YN L+      G ++ + +    M   G   + + FN +I +  + G+ +   +++++M+
Sbjct: 328 YNTLIDTYGKAGQLREASDTFAWMLREGIIPNTVTFNTMIHICGNHGQLEEAASLMQKME 387

Query: 158 ADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYT 217
             +  P   T++IL+ + A  +NI+     +  MK + +EP+ VSY  L  A ++  L  
Sbjct: 388 ELRCPPDTRTYNILISLHAKHNNIDRAASYFKKMKEARLEPDLVSYRTLLYAFSIRHLVG 447

Query: 218 VAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQEL---PNVRSKSYVL 274
            AE  V  +++     +  T   L  +Y    +   L++ W   +      N+ S+ Y  
Sbjct: 448 EAEILVSEMDERGLEIDEFTQSALTRMY---IEAGMLKKSWLWFRRFHLEGNMSSECYSA 504

Query: 275 AIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNG 334
            I+A+G    +  AE+ +L  +  ++L   E +N +I  Y  +   +KA  L+  M  +G
Sbjct: 505 NIDAYGERGHILEAEKAFLCCKESRKLSVLE-FNVMIKAYGISNRYEKACQLIDSMENHG 563

Query: 335 CKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEK 394
             P+  +Y  L      ++L     KA    MK+  T+ V    P+     ++I  F + 
Sbjct: 564 VLPDKFSYNSLIQILASADLPH---KAKFYLMKMQETQLVSDCIPY----CAVISSFIKL 616

Query: 395 GDVGNAENLFEELKKANYTKYTFVYNTLIKAY-----VKAKINDPNLLRRMILGGARPDA 449
           G +  AE LF+E+   N      VY  LI A+     V+  +N  N LR     G   +A
Sbjct: 617 GQLEMAEGLFKEMIGYNVQPDVVVYGILINAFADVGNVREAVNYVNALRN---AGLPMNA 673

Query: 450 ETY-SLLKL 457
             Y SL+KL
Sbjct: 674 VIYNSLIKL 682



 Score = 62.4 bits (150), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 71/335 (21%), Positives = 145/335 (43%), Gaps = 19/335 (5%)

Query: 68  LLEFT--IKNHGISQGEKLFCCIPKDYQN------ELLYNNLV--IACLD-KGVIKLSLE 116
           +LEF   IK +GIS   +  C +    +N      +  YN+L+  +A  D     K  L 
Sbjct: 533 VLEFNVMIKAYGISNRYEKACQLIDSMENHGVLPDKFSYNSLIQILASADLPHKAKFYLM 592

Query: 117 YMKKMRVLGHSISYL-VFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIE 175
            M++ +++   I Y  V +  I L    G+ +    + ++M    V P V  + IL+   
Sbjct: 593 KMQETQLVSDCIPYCAVISSFIKL----GQLEMAEGLFKEMIGYNVQPDVVVYGILINAF 648

Query: 176 ANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNW 235
           A+  N+   +   + ++ + +  N V Y  L   +        A+   + L+ S  G + 
Sbjct: 649 ADVGNVREAVNYVNALRNAGLPMNAVIYNSLIKLYTKVGYLEEAQEAYKMLQASEVGPDV 708

Query: 236 STLDVLIILYGYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEM 295
            + + +I LY   +  K  E I+ +++   +    S+ + +  + RI ++  A ++  +M
Sbjct: 709 YSSNCMIDLYSERSMVKQAEEIFESLKRKGDANEFSFAMMLCMYKRIGKLKEAFQIVQKM 768

Query: 296 QSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLV 355
           + +  +     YN+V+  Y  +G    A G  KEM     +P+  T++ L +   K  + 
Sbjct: 769 RELGLVTDLLSYNNVLGFYAMDGRFKDAVGTFKEMIEAAIQPDDCTFKSLGVVLVKCGIP 828

Query: 356 EEGFKALELGMKLITTKKVRSSTPWLETTLSIIEI 390
           ++    LE+  K      +++   W     S++E+
Sbjct: 829 KQAVGKLEMTRKKDPQSGLQA---WASILFSVVEV 860



 Score = 50.8 bits (120), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 64/309 (20%), Positives = 132/309 (42%), Gaps = 24/309 (7%)

Query: 149 IPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILAT 208
           + ++  +M +  + P  ST+  L+ + +     E  +     M +  +EP+EV+  ++  
Sbjct: 215 VESLWDEMMSRGITPVNSTYGTLIDVYSKGGLTEEALHWLDRMNKQGMEPDEVTMGVVVQ 274

Query: 209 AHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVR 268
            +  A  +  AE + +         NWS L   +   G  ++      + +  Q    + 
Sbjct: 275 TYKKAGEFKKAEQFFK---------NWS-LGKTLKDEGKTSEPTATSAVESASQPHVCLS 324

Query: 269 SKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLK 328
           S +Y   I+ +G+  Q+  A + +  M     +  T  +N++I +   +G +++A+ L++
Sbjct: 325 SYTYNTLIDTYGKAGQLREASDTFAWMLREGIIPNTVTFNTMIHICGNHGQLEEAASLMQ 384

Query: 329 EMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSS--TPWLETTLS 386
           +M    C P+  TY  L     K N ++               KK++ +   P L +  +
Sbjct: 385 KMEELRCPPDTRTYNILISLHAKHNNIDRAASYF---------KKMKEARLEPDLVSYRT 435

Query: 387 IIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKINDPNLL--RRMILGG 444
           ++  F+ +  VG AE L  E+ +       F  + L + Y++A +   + L  RR  L G
Sbjct: 436 LLYAFSIRHLVGEAEILVSEMDERGLEIDEFTQSALTRMYIEAGMLKKSWLWFRRFHLEG 495

Query: 445 ARPDAETYS 453
               +E YS
Sbjct: 496 -NMSSECYS 503



 Score = 45.8 bits (107), Expect = 0.047,   Method: Compositional matrix adjust.
 Identities = 48/205 (23%), Positives = 85/205 (41%), Gaps = 23/205 (11%)

Query: 272 YVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMS 331
           Y + +   G+  +    E LW EM S         Y ++I VY K G  ++A   L  M+
Sbjct: 199 YNIMLRILGKARKWHHVESLWDEMMSRGITPVNSTYGTLIDVYSKGGLTEEALHWLDRMN 258

Query: 332 MNGCKPNAITY-----RHLALGCFKSNLVEEGFKALELGMKLITTKKVR--SSTPWLE-- 382
             G +P+ +T       +   G FK    E+ FK   LG  L    K    ++T  +E  
Sbjct: 259 KQGMEPDEVTMGVVVQTYKKAGEFKK--AEQFFKNWSLGKTLKDEGKTSEPTATSAVESA 316

Query: 383 ----------TTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIK-AYVKAKI 431
                     T  ++I+ + + G +  A + F  + +      T  +NT+I       ++
Sbjct: 317 SQPHVCLSSYTYNTLIDTYGKAGQLREASDTFAWMLREGIIPNTVTFNTMIHICGNHGQL 376

Query: 432 ND-PNLLRRMILGGARPDAETYSLL 455
            +  +L+++M      PD  TY++L
Sbjct: 377 EEAASLMQKMEELRCPPDTRTYNIL 401



 Score = 39.7 bits (91), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 36/148 (24%), Positives = 68/148 (45%), Gaps = 8/148 (5%)

Query: 272 YVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMS 331
           Y   I +F ++ Q+  AE L+ EM           Y  +I+ +   G + +A   +  + 
Sbjct: 606 YCAVISSFIKLGQLEMAEGLFKEMIGYNVQPDVVVYGILINAFADVGNVREAVNYVNALR 665

Query: 332 MNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIF 391
             G   NA+ Y  L     K   +EE  +A     K++   +V    P + ++  +I+++
Sbjct: 666 NAGLPMNAVIYNSLIKLYTKVGYLEEAQEAY----KMLQASEV---GPDVYSSNCMIDLY 718

Query: 392 AEKGDVGNAENLFEELK-KANYTKYTFV 418
           +E+  V  AE +FE LK K +  +++F 
Sbjct: 719 SERSMVKQAEEIFESLKRKGDANEFSFA 746


>gi|302764528|ref|XP_002965685.1| hypothetical protein SELMODRAFT_407276 [Selaginella moellendorffii]
 gi|300166499|gb|EFJ33105.1| hypothetical protein SELMODRAFT_407276 [Selaginella moellendorffii]
          Length = 949

 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 95/452 (21%), Positives = 190/452 (42%), Gaps = 56/452 (12%)

Query: 13  AFQSWMREGFPVHRGEIFHSINRLRKLQLNKRALEVMEWVIRERPYRPKELDYSYLLEFT 72
           A + WMR G  +    +      L K +     ++++E +  ER  +  ++   + +   
Sbjct: 130 AVKKWMRRGNCLSSDVLSTIYFWLMKRKRYTEIMKLLEGIRCERLVKFTDMHCVWAIGVI 189

Query: 73  IKNHGISQGEKLFCCIPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLV 132
            +  G+++ E+ +  +P+  + + +   L ++   +  +  + ++++K++V  H+   L 
Sbjct: 190 SRRRGMAKAERFYDSLPEKLRTDRVTVGLFLSVAKENGLAKAEQWLEKIQV--HTTDILD 247

Query: 133 FNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMK 192
              ++ LN    +   +  +  +M+   + P V T+  LM ++  D    GL        
Sbjct: 248 VMMVLYLNRD--KHHKVVEMFERMRGLGLQPSVRTY--LMLLKCKDRGAGGL-------- 295

Query: 193 RSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGK 252
                       I   A    +   V +  +  L  +M             +YGY+ K  
Sbjct: 296 ----------NAIEGEALGAVQTMDVEDPPLRTLNDAME------------VYGYVGKQD 333

Query: 253 DLERIWATVQEL-PNVRSKSYVLAIEAFGRIAQVSRAEELWLEM-QSVKQLKATEQ--YN 308
            +E +W +++    ++   SY  AI A G + +V++A  L  E+     +    EQ  + 
Sbjct: 334 GIEELWRSLKRTRSDIHQSSYFSAITALGLVGEVAKARALCKELLAGSDEFTKFEQNPHA 393

Query: 309 SVISVYCKNGFIDKASGLL--KEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGM 366
            ++ VY +NG ++KA  +L  KE+  +   P    Y  L  G   +N + E  K L+ G+
Sbjct: 394 LMLEVYARNGMMEKAERILQSKELDRDSFAP----YNSLIQGYMAANNISEALKKLDDGL 449

Query: 367 KLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKY--TFVYNTLIK 424
             +  K +R      +T + ++ ++A  GDV  A+ L        YTK     VYN  +K
Sbjct: 450 AAVPAKSIRLQ---YKTMMVLLPVYAANGDVEGAKELMR-----RYTKLGDAGVYNEFLK 501

Query: 425 AYVKAKINDPNLLRRMILGGARPDAETYSLLK 456
            Y+  K +    + RM   G   + ET  LL+
Sbjct: 502 VYISRKRHPREFMERMQANGVEGNRETEKLLE 533


>gi|356574710|ref|XP_003555488.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g23020-like [Glycine max]
          Length = 821

 Score = 86.3 bits (212), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 99/395 (25%), Positives = 174/395 (44%), Gaps = 50/395 (12%)

Query: 98  YNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMK 157
           YN L+      G +K + +   +M   G + + + FN +I +  + GR + +  ++R+M+
Sbjct: 284 YNTLIDTYGKAGQLKEASQTFVEMLKQGVAPTTVTFNTMINICGNHGRLEEVSLLVRKME 343

Query: 158 ADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYT 217
             + +P+  T++IL+ + A   +I    K +  MK + +EP+ VSY  L  A+++ ++  
Sbjct: 344 ELRCSPNTRTYNILISLHAKHDDIGMATKYFETMKEACLEPDLVSYRTLLYAYSIRKMIR 403

Query: 218 VAETYVEALEKSMTGNNWSTLDVLIILY---GYLAKGKDLERIW-ATVQELPNVRSKSYV 273
            AE  V+ ++K     +  T   L  +Y   G L    D   +W        N+ S+ Y 
Sbjct: 404 EAEELVKEMDKRRLEIDQYTQSALTRMYIEAGML----DRSLLWFLRFHVAGNMTSECYA 459

Query: 274 LAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMN 333
             I+A+G       AE++++  Q  K L   E +N +I  Y      +KA  L   M  +
Sbjct: 460 ANIDAYGEHGHTLEAEKVFIWCQKQKNLSVLE-FNVMIKAYGIGKCYEKACQLFDSMEKH 518

Query: 334 GCKPNAITYR---HLALGCFKSNLVEEGFKALE---LGMKLITTKKVRSSTP---WLETT 384
           G   +  +Y    H+     + ++ +   K ++   L    I    V SS      LE T
Sbjct: 519 GVVADRCSYTSLIHILASADQPHIAKPYLKKMQEAGLVSDCIPYCAVISSFAKLGQLEMT 578

Query: 385 LSI-------------------IEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKA 425
             I                   I +F++ G V  A    +E+KKA     T +YN+LIK 
Sbjct: 579 EDIYREMIRHGVQPDVIVHGILINVFSDAGRVKEAIGYVDEMKKAGLPGNTVIYNSLIKL 638

Query: 426 YVKAKINDPNLLRRMILGGARPDAETYSLLKLAEQ 460
           Y  AKI++        L  A+   E Y LL+L+++
Sbjct: 639 Y--AKIDN--------LEKAK---EAYKLLQLSDE 660



 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 66/318 (20%), Positives = 138/318 (43%), Gaps = 22/318 (6%)

Query: 125 GHSISYLVFNRLIILNSSPGRRKT---IPNILRQMKADKVAPHVSTFHILMKIEANDHNI 181
           GH ++ + +N   I+  S GR +    + ++  +M A  +A   ST+  L+ + +     
Sbjct: 142 GHELNVIHYN---IMLRSLGRARQWRRVESLWNEMNARGIAATCSTYGTLIDVYSKGGRR 198

Query: 182 EGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVL 241
           +  +   + M    V+P+EV+  I+   +  A  +   E   E   K  +G    +    
Sbjct: 199 DDALSWLNMMLGQGVQPDEVTMVIVVQLYKKAGEFQKGE---EFFRKWSSGKPLRSKSKP 255

Query: 242 IILYGYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQL 301
           +     +    +L+   A      +  S +Y   I+ +G+  Q+  A + ++EM      
Sbjct: 256 LRSNDNVVASPELDERVACAN--ASFGSHTYNTLIDTYGKAGQLKEASQTFVEMLKQGVA 313

Query: 302 KATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKA 361
             T  +N++I++   +G +++ S L+++M    C PN  TY         + L+    K 
Sbjct: 314 PTTVTFNTMINICGNHGRLEEVSLLVRKMEELRCSPNTRTY---------NILISLHAKH 364

Query: 362 LELGM--KLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVY 419
            ++GM  K   T K     P L +  +++  ++ +  +  AE L +E+ K       +  
Sbjct: 365 DDIGMATKYFETMKEACLEPDLVSYRTLLYAYSIRKMIREAEELVKEMDKRRLEIDQYTQ 424

Query: 420 NTLIKAYVKAKINDPNLL 437
           + L + Y++A + D +LL
Sbjct: 425 SALTRMYIEAGMLDRSLL 442



 Score = 41.6 bits (96), Expect = 0.82,   Method: Compositional matrix adjust.
 Identities = 37/160 (23%), Positives = 70/160 (43%), Gaps = 14/160 (8%)

Query: 272 YVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMS 331
           Y   I +F ++ Q+   E+++ EM           +  +I+V+   G + +A G + EM 
Sbjct: 562 YCAVISSFAKLGQLEMTEDIYREMIRHGVQPDVIVHGILINVFSDAGRVKEAIGYVDEMK 621

Query: 332 MNGCKPNAITYRHLALGCFKSNLVE---EGFKALELGMKLITTKKVRSSTPWLETTLSII 388
             G   N + Y  L     K + +E   E +K L+L              P + ++  +I
Sbjct: 622 KAGLPGNTVIYNSLIKLYAKIDNLEKAKEAYKLLQLS----------DEGPGVYSSNCMI 671

Query: 389 EIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVK 428
           +++ ++  V  A+ +FE LKK N     F +  ++  Y K
Sbjct: 672 DLYVKRSMVDQAKEIFETLKK-NGAANEFTFAMMLCLYKK 710



 Score = 39.3 bits (90), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 54/275 (19%), Positives = 118/275 (42%), Gaps = 6/275 (2%)

Query: 117 YMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEA 176
           Y+KKM+  G     + +  +I   +  G+ +   +I R+M    V P V    IL+ + +
Sbjct: 546 YLKKMQEAGLVSDCIPYCAVISSFAKLGQLEMTEDIYREMIRHGVQPDVIVHGILINVFS 605

Query: 177 NDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHA-VARLYTVAETYVEALEKSMTGNNW 235
           +   ++  +    +MK++ +  N V Y  L   +A +  L    E Y + L+ S  G   
Sbjct: 606 DAGRVKEAIGYVDEMKKAGLPGNTVIYNSLIKLYAKIDNLEKAKEAY-KLLQLSDEGPGV 664

Query: 236 STLDVLIILYGYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEM 295
            + + +I LY   +     + I+ T+++       ++ + +  + +I +   A ++  ++
Sbjct: 665 YSSNCMIDLYVKRSMVDQAKEIFETLKKNGAANEFTFAMMLCLYKKIERFDEAIQIAKQI 724

Query: 296 QSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLV 355
           + +  L     YN+V+ +Y   G   +A    KEM     + N  + R L     +  + 
Sbjct: 725 RKLGPLTDL-SYNNVLDLYAIAGRPKEAIETFKEMVRASIQVNDCSLRSLGNLLLRYGVS 783

Query: 356 EEGFKALELGMKLITTKKVRSSTPWLETTLSIIEI 390
                 LE  +K   +  +++   W+    S++E+
Sbjct: 784 RLAVHKLEALVKKDASNGLQA---WMSALASVLEV 815


>gi|110741592|dbj|BAE98744.1| PPR-repeat protein [Arabidopsis thaliana]
          Length = 548

 Score = 86.3 bits (212), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 98/453 (21%), Positives = 197/453 (43%), Gaps = 26/453 (5%)

Query: 15  QSWMREGFPVHRGEIFHSIN--RLRKLQLNKRALEVMEWVIRERPYRPKELDYSYLLEFT 72
           + W+R    V  G++   ++  RLR ++LN  A+++   +++ RP+ P  +D++ LL   
Sbjct: 38  RCWVRASSSVSGGDLRERLSKTRLRDIKLND-AIDLFSDMVKSRPF-PSIVDFNRLLSAI 95

Query: 73  IK----NHGISQGEKLFCCIPKDYQNELLYNNLVIACLDKGV-IKLSLEYMKKMRVLGHS 127
           +K    +  IS G+K+        +N+L   N+VI C      + L+L  + KM  LG+ 
Sbjct: 96  VKLKKYDVVISLGKKME---VLGIRNDLYTFNIVINCFCCCFQVSLALSILGKMLKLGYE 152

Query: 128 ISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKV 187
              +    L+       R     +++ +M      P +  ++ ++        +      
Sbjct: 153 PDRVTIGSLVNGFCRRNRVSDAVSLVDKMVEIGYKPDIVAYNAIIDSLCKTKRVNDAFDF 212

Query: 188 YSDMKRSEVEPNEVSYCILATAHA-VARLYTVAETYVEALEKSMTGN--NWSTLDVLIIL 244
           + +++R  + PN V+Y  L       +R    A    + ++K +T N   +S L    + 
Sbjct: 213 FKEIERKGIRPNVVTYTALVNGLCNSSRWSDAARLLSDMIKKKITPNVITYSALLDAFVK 272

Query: 245 YGYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKAT 304
            G + + K+L      +   P++   +Y   +       ++  A +++  M S   L   
Sbjct: 273 NGKVLEAKELFEEMVRMSIDPDI--VTYSSLVNGLCLHDRIDEANQMFDLMVSKGCLADV 330

Query: 305 EQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALEL 364
             YN++I+ +CK   ++    L +EMS  G   N +TY  L  G F++  V+   KA E 
Sbjct: 331 VSYNTLINGFCKAKRVEDGMKLFREMSQRGLVSNTVTYNTLIQGFFQAGDVD---KAQE- 386

Query: 365 GMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIK 424
                +       +P + T   ++    + G++  A  +FE+++K         Y T+I+
Sbjct: 387 ---FFSQMDFFGISPDIWTYNILLGGLCDNGELEKALVIFEDMQKREMDLDIVTYTTVIR 443

Query: 425 AYVK-AKINDP-NLLRRMILGGARPDAETYSLL 455
              K  K+ +  +L   + L G +PD  TY+ +
Sbjct: 444 GMCKTGKVEEAWSLFCSLSLKGLKPDIVTYTTM 476



 Score = 41.2 bits (95), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 71/357 (19%), Positives = 141/357 (39%), Gaps = 54/357 (15%)

Query: 98  YNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLI--ILNSSPGRRKTIPNILRQ 155
           YN ++ +      +  + ++ K++   G   + + +  L+  + NSS  R      +L  
Sbjct: 193 YNAIIDSLCKTKRVNDAFDFFKEIERKGIRPNVVTYTALVNGLCNSS--RWSDAARLLSD 250

Query: 156 MKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAV-AR 214
           M   K+ P+V T+  L+     +  +    +++ +M R  ++P+ V+Y  L     +  R
Sbjct: 251 MIKKKITPNVITYSALLDAFVKNGKVLEAKELFEEMVRMSIDPDIVTYSSLVNGLCLHDR 310

Query: 215 LYTVAETYVEALEKSMTGN--NWSTLDVLIILYGYLAKGKDLERIWATVQELPN----VR 268
           +    + +   + K    +  +++TL     + G+  K K +E      +E+        
Sbjct: 311 IDEANQMFDLMVSKGCLADVVSYNTL-----INGF-CKAKRVEDGMKLFREMSQRGLVSN 364

Query: 269 SKSYVLAIEAFGRIAQVSRAEELWLEMQSV-----------------------KQLKATE 305
           + +Y   I+ F +   V +A+E + +M                          K L   E
Sbjct: 365 TVTYNTLIQGFFQAGDVDKAQEFFSQMDFFGISPDIWTYNILLGGLCDNGELEKALVIFE 424

Query: 306 Q------------YNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSN 353
                        Y +VI   CK G +++A  L   +S+ G KP+ +TY  +  G     
Sbjct: 425 DMQKREMDLDIVTYTTVIRGMCKTGKVEEAWSLFCSLSLKGLKPDIVTYTTMMSGLCTKG 484

Query: 354 LVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKA 410
           L+ E  +AL   MK     K   +    + TLS  E+  +    G A +L +++K  
Sbjct: 485 LLHE-VEALYTKMKQEGLMKNDCTLSDGDITLS-AELIKKMLSCGYAPSLLKDIKSG 539


>gi|302806475|ref|XP_002984987.1| hypothetical protein SELMODRAFT_20977 [Selaginella moellendorffii]
 gi|300147197|gb|EFJ13862.1| hypothetical protein SELMODRAFT_20977 [Selaginella moellendorffii]
          Length = 471

 Score = 86.3 bits (212), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 81/355 (22%), Positives = 156/355 (43%), Gaps = 18/355 (5%)

Query: 107 DKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVS 166
           + G +  +LE +++M+  G +        +I   ++ G      + LR M  D   P+V 
Sbjct: 2   NAGDLHAALELLEEMKSAGFAPDAFTHTPIITAMANAGDLDGAMDHLRSMGCD---PNVV 58

Query: 167 TFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEAL 226
           T+  L+   A    +E  MK+  +M+     PN V+Y +L  A     +   A+  V+ +
Sbjct: 59  TYTALIAAFARAKKLEEAMKLLEEMRERGCPPNLVTYNVLVDALCKLSMVGAAQDVVKKM 118

Query: 227 EKSMTGNNWSTLDVLIILY---GYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIA 283
            +     N  T + L+  +   G +   + L  I       PNV   +Y   I+   +  
Sbjct: 119 IEGGFAPNVMTFNSLVDGFCKRGNVDDARKLLGIMVAKGMRPNV--VTYSALIDGLCKSQ 176

Query: 284 QVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYR 343
           +   A+E+  EM++         Y+++I   CK   I++A  +L+ M+ +GC P+ + Y 
Sbjct: 177 KFLEAKEVLEEMKASGVTPDAFTYSALIHGLCKADKIEEAEQMLRRMAGSGCTPDVVVYS 236

Query: 344 HLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENL 403
            +     KS  + E  K L+        +K R S P + T  ++I+   + G +  A+ +
Sbjct: 237 SIIHAFCKSGKLLEAQKTLQ------EMRKQRKS-PDVVTYNTVIDGLCKLGKIAEAQVI 289

Query: 404 FEELKKA-NYTKYTFVYNTLIKAYVKAK--INDPNLLRRMILGGARPDAETYSLL 455
            ++++++ +       Y+T+I    K+   +    LL RM   G  PD  TY+ +
Sbjct: 290 LDQMQESGDVLPDVVTYSTVINGLCKSDMLVEAQKLLDRMCKAGCNPDVVTYTTI 344



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 85/383 (22%), Positives = 156/383 (40%), Gaps = 58/383 (15%)

Query: 94  NELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNIL 153
           N + YN LV A     ++  + + +KKM   G + + + FN L+      G       +L
Sbjct: 91  NLVTYNVLVDALCKLSMVGAAQDVVKKMIEGGFAPNVMTFNSLVDGFCKRGNVDDARKLL 150

Query: 154 RQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVA 213
             M A  + P+V T+  L+             +V  +MK S V P+  +Y  L   H + 
Sbjct: 151 GIMVAKGMRPNVVTYSALIDGLCKSQKFLEAKEVLEEMKASGVTPDAFTYSALI--HGLC 208

Query: 214 RLYTVAETYVEALEKSMTGNNWSTLDVLI---ILYGYLAKGKDLERIWATVQELPNVRSK 270
           +   + E   E + + M G+   T DV++   I++ +   GK LE    T+QE+   R  
Sbjct: 209 KADKIEEA--EQMLRRMAGSGC-TPDVVVYSSIIHAFCKSGKLLE-AQKTLQEMRKQRKS 264

Query: 271 ----SYVLAIEAFGRIAQVSRAEELWLEMQS------------------------VKQLK 302
               +Y   I+   ++ +++ A+ +  +MQ                         V+  K
Sbjct: 265 PDVVTYNTVIDGLCKLGKIAEAQVILDQMQESGDVLPDVVTYSTVINGLCKSDMLVEAQK 324

Query: 303 ATEQ------------YNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCF 350
             ++            Y ++I   CK G +++A  LL+ M   GC PN +TY  L  G  
Sbjct: 325 LLDRMCKAGCNPDVVTYTTIIDGLCKCGRLEEAEYLLQGMKRAGCAPNVVTYTTLISGLC 384

Query: 351 KSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELK-- 408
           K+  V+E  + +E         +     P L T  +++      G +  A+ L + +K  
Sbjct: 385 KARKVDEAERVME-------EMRNAGCPPNLVTYNTMVNGLCVSGRIKEAQQLVQRMKDG 437

Query: 409 KANYTKYTFVYNTLIKAYVKAKI 431
           +A  +     Y T++ A + + +
Sbjct: 438 RAECSPDAATYRTIVNALMSSDL 460



 Score = 56.6 bits (135), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 71/329 (21%), Positives = 143/329 (43%), Gaps = 26/329 (7%)

Query: 51  WVIRERPYRPKELDYSYLLEFTIKNHGISQGEKLF------CCIPKDYQNELLYNNLVIA 104
            ++  +  RP  + YS L++   K+    + +++          P  +    L + L  A
Sbjct: 151 GIMVAKGMRPNVVTYSALIDGLCKSQKFLEAKEVLEEMKASGVTPDAFTYSALIHGLCKA 210

Query: 105 CLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPH 164
             DK  I+ + + +++M   G +   +V++ +I      G+       L++M+  + +P 
Sbjct: 211 --DK--IEEAEQMLRRMAGSGCTPDVVVYSSIIHAFCKSGKLLEAQKTLQEMRKQRKSPD 266

Query: 165 VSTFHILMKIEANDHNIEGLMKVYSDMKRS-EVEPNEVSYCILATAHAVARLYTVAETYV 223
           V T++ ++        I     +   M+ S +V P+ V+Y  +      + +   A+  +
Sbjct: 267 VVTYNTVIDGLCKLGKIAEAQVILDQMQESGDVLPDVVTYSTVINGLCKSDMLVEAQKLL 326

Query: 224 EALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQEL------PNVRSKSYVLAIE 277
           + + K+  G N   +    I+ G    G+ LE     +Q +      PNV   +Y   I 
Sbjct: 327 DRMCKA--GCNPDVVTYTTIIDGLCKCGR-LEEAEYLLQGMKRAGCAPNV--VTYTTLIS 381

Query: 278 AFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNG--- 334
              +  +V  AE +  EM++         YN++++  C +G I +A  L++ M  +G   
Sbjct: 382 GLCKARKVDEAERVMEEMRNAGCPPNLVTYNTMVNGLCVSGRIKEAQQLVQRMK-DGRAE 440

Query: 335 CKPNAITYRHLALGCFKSNLVEEGFKALE 363
           C P+A TYR +      S+LV+E  + LE
Sbjct: 441 CSPDAATYRTIVNALMSSDLVQEAEQLLE 469



 Score = 48.1 bits (113), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 45/169 (26%), Positives = 74/169 (43%), Gaps = 29/169 (17%)

Query: 315 CKNGFIDKASGLLKEMSMNGCKPNAITYR-----------------HL-ALGCFKSNLVE 356
           C  G +  A  LL+EM   G  P+A T+                  HL ++GC   N+V 
Sbjct: 1   CNAGDLHAALELLEEMKSAGFAPDAFTHTPIITAMANAGDLDGAMDHLRSMGC-DPNVVT 59

Query: 357 -----EGF---KALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELK 408
                  F   K LE  MKL+   + R   P L T   +++   +   VG A+++ +++ 
Sbjct: 60  YTALIAAFARAKKLEEAMKLLEEMRERGCPPNLVTYNVLVDALCKLSMVGAAQDVVKKMI 119

Query: 409 KANYTKYTFVYNTLIKAYVK-AKINDP-NLLRRMILGGARPDAETYSLL 455
           +  +      +N+L+  + K   ++D   LL  M+  G RP+  TYS L
Sbjct: 120 EGGFAPNVMTFNSLVDGFCKRGNVDDARKLLGIMVAKGMRPNVVTYSAL 168


>gi|449438486|ref|XP_004137019.1| PREDICTED: pentatricopeptide repeat-containing protein At2g20710,
           mitochondrial-like [Cucumis sativus]
 gi|449479168|ref|XP_004155524.1| PREDICTED: pentatricopeptide repeat-containing protein At2g20710,
           mitochondrial-like [Cucumis sativus]
          Length = 500

 Score = 85.9 bits (211), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 92/450 (20%), Positives = 190/450 (42%), Gaps = 11/450 (2%)

Query: 10  VGSAFQSWMREGFPVHRGEIFHSINRLRKLQLNKRALEVMEWVIRERPYRPKELDYSYLL 69
           V    + W+ +G  + + E+ + ++ ++  +    ALE+ +W+   R       D +  L
Sbjct: 52  VVPVLEKWVGDGRAIGKPELQYLVHLMKDSRRFNHALEISQWMTDRRYLSLSPSDAAVRL 111

Query: 70  EFTIKNHGISQGEKLFCCIPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSIS 129
           +     HG+   E  F  I    +   +Y  L+   + +  ++ +   M++MR +G + +
Sbjct: 112 DLIHSVHGLEHAENYFNSISIRLKTSNVYGALLGCYVREKSLEKAEAIMQEMRKMGIATT 171

Query: 130 YLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYS 189
              +N LI L +  G+   I  ++ +MK   +   + +   L        +I G+ K+  
Sbjct: 172 SFAYNVLINLYAQIGQHDKIDLLIEEMKTKGIPQDIYSIRNLCAAYVAKADISGMEKILK 231

Query: 190 DMKR-SEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGN-NWSTLDVLIILYGY 247
            ++  SE++ +   Y I A  +  A L T A + ++  E+ +  N N      L+ LY  
Sbjct: 232 RIEEDSELKADWTIYSIAANGYLTAGLETEALSMLKKTEEKVRPNTNKFAFKFLLSLYER 291

Query: 248 LAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQY 307
                ++ R+W T + L       Y L I +  ++  +  AE ++ E +S   +      
Sbjct: 292 TGHKNEVYRVWNTFKPLTKETCVPYALMITSLAKLDDIEGAERIFQEWESKCTVYDFRVL 351

Query: 308 NSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGF--KALELG 365
           N ++  YC+ G +DKA  ++ +  +    P   T+  LA G       E G   KA+E+ 
Sbjct: 352 NRLLVAYCRKGLLDKAESVVNQAVVERT-PFRSTWSILATG-----YAEYGHMSKAVEML 405

Query: 366 MKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKA 425
            K I   +        +   + ++   ++GD    + +   L K++ T    +Y  L++ 
Sbjct: 406 KKAILVGRQNWKPKQGDILEACLDYLEKQGDAETMDEIV-RLCKSSGTVMKEMYYRLLRT 464

Query: 426 YVKAKINDPNLLRRMILGGARPDAETYSLL 455
            +       ++L +M + G   D E   +L
Sbjct: 465 SIAGGKPVISILEQMKMDGFAADEEVDKIL 494


>gi|147857775|emb|CAN80799.1| hypothetical protein VITISV_019809 [Vitis vinifera]
          Length = 1099

 Score = 85.9 bits (211), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 103/442 (23%), Positives = 181/442 (40%), Gaps = 57/442 (12%)

Query: 59  RPKELDYSYLLEFTIKNHGISQGEKLFCCIPKD--YQNELLYNNLVIACLDKGVIKLSLE 116
            P    Y+ L+    +N G+    ++F  +P+    +NE+ Y NL+    + G I  +L+
Sbjct: 226 HPDTFTYTSLILGHCRNKGVDNAYEVFLIMPQKGCQRNEVSYTNLIHGLCEAGRINEALK 285

Query: 117 YMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEA 176
               M       +   +  LI   S  GR+    N+  +MK     P+V T+ +L+    
Sbjct: 286 LFADMTEDNCCPTVRTYTVLIYALSGSGRKVEALNLFNEMKEKGCEPNVHTYTVLIDGLC 345

Query: 177 NDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWS 236
            ++ ++   K+ S+M    + P+ V+Y  L   +    +   A   ++ +E +  G N  
Sbjct: 346 KENKMDEARKMLSEMSEKGLIPSVVTYNALIDGYCKEGMIDDAFEILDLMESNSCGPNTR 405

Query: 237 TLDVLI----------------------------ILYGYLAKGK----DLE---RIWATV 261
           T + LI                            I Y  L  G+    DLE   R+ + +
Sbjct: 406 TYNELICGLCKKRKVHKAMALLNKMLERKLSPSLITYNSLIHGQCKVNDLESAYRLLSLM 465

Query: 262 QELPNVRSK-SYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQ-YNSVISVYCKNGF 319
            E   V  + +Y + I+   +  +V  A  L+  +++ K +KA E  Y ++I  YCK G 
Sbjct: 466 NENGLVPDQWTYSVFIDTLCKEGRVEEAGTLFDSVKA-KGVKANEVIYTALIDGYCKVGK 524

Query: 320 IDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEG----FKALELGMKLITTKKVR 375
           ID A  LL+ M  + C PN+ TY  L  G  K   ++E      K L +G+K        
Sbjct: 525 IDVAYSLLERMLNDACLPNSYTYNVLIEGLCKEKKMKEASSLVAKMLTMGVK-------- 576

Query: 376 SSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKIND-- 433
              P + T   +I    + G   +A  +F  +    Y      Y   + AY    + +  
Sbjct: 577 ---PTVVTYTILIGEMLKDGAFDHALKVFNHMVSLGYQPDVCTYTAFLHAYFSQGMLEEV 633

Query: 434 PNLLRRMILGGARPDAETYSLL 455
            +++ +M   G  PD  TY++L
Sbjct: 634 DDVIAKMNEEGILPDLVTYTVL 655



 Score = 42.0 bits (97), Expect = 0.60,   Method: Compositional matrix adjust.
 Identities = 83/441 (18%), Positives = 162/441 (36%), Gaps = 51/441 (11%)

Query: 29  IFHSINRLRKLQLNKRALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQGEKLFCCI 88
           + H   ++  L+   R L +M     E    P +  YS  ++   K   + +   LF  +
Sbjct: 445 LIHGQCKVNDLESAYRLLSLM----NENGLVPDQWTYSVFIDTLCKEGRVEEAGTLFDSV 500

Query: 89  PKD--YQNELLYNNLVIACLDKGVIKLSLEYMKKM---RVLGHSISYLVFNRLIILNSSP 143
                  NE++Y  L+      G I ++   +++M     L +S +Y   N LI      
Sbjct: 501 KAKGVKANEVIYTALIDGYCKVGKIDVAYSLLERMLNDACLPNSYTY---NVLIEGLCKE 557

Query: 144 GRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSY 203
            + K   +++ +M    V P V T+ IL+     D   +  +KV++ M     +P+  +Y
Sbjct: 558 KKMKEASSLVAKMLTMGVKPTVVTYTILIGEMLKDGAFDHALKVFNHMVSLGYQPDVCTY 617

Query: 204 CILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLA---KGKDLERIWAT 260
                A+    +    +  +  + +     +  T  VLI  Y  L    +  D  +    
Sbjct: 618 TAFLHAYFSQGMLEEVDDVIAKMNEEGILPDLVTYTVLIDGYARLGLTHRAFDFLKCMVD 677

Query: 261 VQELPNVRSKSYVL----------------AIEAFGRIAQVSRAEELWLEMQSVKQLKAT 304
               P++   S ++                 I++   +  V  A+ +W  ++    LK  
Sbjct: 678 TGCKPSLYIVSILIKNLSHENRMKETRSEIGIDSVSNVNSVDIAD-VWKTLEYEIALKLF 736

Query: 305 EQ------------YNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKS 352
           E+            Y ++I+ +C+   +++A GL+  M   G  P+   Y  L   C K 
Sbjct: 737 EKMVEHGCTIDVSIYGALIAGFCQQERLEEAQGLVHHMKERGMSPSEDIYNSLLDCCCKL 796

Query: 353 NLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANY 412
            +  E        ++L+         P LE+   ++     +G    A+ +F  L    Y
Sbjct: 797 GVYAE-------AVRLVDAMVENGLLPLLESYKLLVCGLYIEGSNEKAKAVFHGLLSCGY 849

Query: 413 TKYTFVYNTLIKAYVKAKIND 433
                 +  LI   +K  + D
Sbjct: 850 NYDEVAWKVLIDGLLKRDLVD 870


>gi|297827821|ref|XP_002881793.1| EMB2654 [Arabidopsis lyrata subsp. lyrata]
 gi|297327632|gb|EFH58052.1| EMB2654 [Arabidopsis lyrata subsp. lyrata]
          Length = 822

 Score = 85.9 bits (211), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 85/395 (21%), Positives = 165/395 (41%), Gaps = 55/395 (13%)

Query: 4   LPRGEPVGSAFQSWM----REGFPVHRGEIFHSINRLRKLQLNKRALEVMEWVIRERPYR 59
           L R E V     SW+    R+ FPV    +   ++R   ++L    + V +W+  ++ Y 
Sbjct: 88  LNRWEEVDGVLNSWVGRFARKNFPV----LIRELSRRGCIEL---CVNVFKWMKSQKNYC 140

Query: 60  PKELDYSYLLEFTIKNHGISQGEKLF------CCIPK---------------------DY 92
            +   Y+ ++    +++ + Q   LF       C P                      + 
Sbjct: 141 ARNDIYNMMIRLHARHNWVDQARGLFFEMQKWSCKPDAETYDALINAHGRAGQWRWAMNL 200

Query: 93  QNELL----------YNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSS 142
            +++L          YNNL+ AC   G  + +LE  KKM   G     +  N ++    S
Sbjct: 201 MDDMLRAAIAPSRSTYNNLINACGSSGNWRQALEVCKKMTDNGVGPDLVTHNIVLSAYKS 260

Query: 143 PGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDM--KRSEVEPNE 200
             +     +    MK  KV P  +TF+I++   +        + V++ M  KR+E  P+ 
Sbjct: 261 GRQYSKALSYFELMKGAKVRPDTTTFNIIIYCLSKLGQSSQALDVFNSMRDKRAECRPDV 320

Query: 201 VSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWAT 260
           V++  +   ++V           EA+       N  + + L+  Y      ++   ++  
Sbjct: 321 VTFTSIMHLYSVRGEIENCRAVFEAMLAEGLKPNIVSYNALMGAYAVHGMSENALSVFGD 380

Query: 261 VQE---LPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKN 317
           ++    +P+V   SY   + ++GR  Q  +A+E++L M+  ++      YN++I  Y  N
Sbjct: 381 IKRNGIVPDV--VSYTSLLNSYGRSRQPGKAKEVFLMMRKERRKPNVVTYNALIDAYGSN 438

Query: 318 GFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKS 352
           GF+ +A  + ++M  +G KPN ++   L   C +S
Sbjct: 439 GFLAEAVEIFRQMEQDGTKPNVVSVCTLLAACSRS 473



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 54/230 (23%), Positives = 104/230 (45%), Gaps = 13/230 (5%)

Query: 143 PGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVS 202
           PG+ K    +   M+ ++  P+V T++ L+    ++  +   ++++  M++   +PN VS
Sbjct: 406 PGKAK---EVFLMMRKERRKPNVVTYNALIDAYGSNGFLAEAVEIFRQMEQDGTKPNVVS 462

Query: 203 YCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQ 262
            C L  A + ++     ET + A +      N +  +  I   G      +LE+  A  Q
Sbjct: 463 VCTLLAACSRSKKKVNVETVLSAAQSRGINLNTAAYNSAI---GSYINAAELEKAIALYQ 519

Query: 263 ELPNVRSK----SYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNG 318
            +   + K    ++ + I    R+++   A     EM+ +      E Y+SV+  Y K G
Sbjct: 520 TMRKKKVKADSVTFTILISGSCRMSKYPEAISYLKEMEDLSIPLTKEVYSSVLCAYSKQG 579

Query: 319 FIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKL 368
            + +A  +  +M M GCKP+ I Y  +       N  E+  KA EL +++
Sbjct: 580 QVTEAESIFNQMKMAGCKPDVIAYTSM---LHAYNASEKWGKACELFLEM 626



 Score = 38.5 bits (88), Expect = 7.0,   Method: Compositional matrix adjust.
 Identities = 33/151 (21%), Positives = 63/151 (41%), Gaps = 9/151 (5%)

Query: 307 YNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGM 366
           YN +I ++ ++ ++D+A GL  EM    CKP+A TY  L     ++             M
Sbjct: 146 YNMMIRLHARHNWVDQARGLFFEMQKWSCKPDAETYDALINAHGRAG-------QWRWAM 198

Query: 367 KLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAY 426
            L+      +  P   T  ++I      G+   A  + +++           +N ++ AY
Sbjct: 199 NLMDDMLRAAIAPSRSTYNNLINACGSSGNWRQALEVCKKMTDNGVGPDLVTHNIVLSAY 258

Query: 427 VKAKINDPNLLRRMILGGA--RPDAETYSLL 455
              +     L    ++ GA  RPD  T++++
Sbjct: 259 KSGRQYSKALSYFELMKGAKVRPDTTTFNII 289


>gi|359487666|ref|XP_002277942.2| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09820-like [Vitis vinifera]
          Length = 609

 Score = 85.9 bits (211), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 87/357 (24%), Positives = 156/357 (43%), Gaps = 36/357 (10%)

Query: 116 EYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIE 175
           + ++ M+  G S S + +N +I      G+      +L++M A ++ P+  TF+IL+   
Sbjct: 250 DVVEDMKAWGFSPSVITYNTIIDGYCKAGKMFKADALLKEMVAKRIHPNEITFNILIDGF 309

Query: 176 ANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNW 235
             D N+    KV+ +M+R  ++PN V+Y  L   + +     + E     L+  M+G   
Sbjct: 310 CRDENVTAAKKVFEEMQRQGLQPNVVTYNSL--INGLCSNGKLDEAL--GLQDKMSG--- 362

Query: 236 STLDVLIILYGYLAKGKDLERIWATVQEL----------PNVRSKSYVLAIEAFGRIAQV 285
             L   ++ Y  L  G   +++    +E+          PNV   ++   I+A+G+  ++
Sbjct: 363 MGLKPNVVTYNALINGFCKKKMLKEAREMLDDIGKRGLAPNV--ITFNTLIDAYGKAGRM 420

Query: 286 SRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHL 345
             A  L   M           YN +I  +C+ G + +A  L KEM  NG K + +TY  L
Sbjct: 421 DDAFLLRSMMLDTGVCPNVSTYNCLIVGFCREGNVKEARKLAKEMEGNGLKADLVTYNIL 480

Query: 346 ALGCFKSNLVEEGFKAL----ELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAE 401
                K     +  + L    E+G+            P   T  ++I+ +  +G+   A 
Sbjct: 481 VDALCKKGETRKAVRLLDEMFEVGL-----------NPSHLTYNALIDGYFREGNSTAAL 529

Query: 402 NLFEELKKANYTKYTFVYNTLIKAYV-KAKINDPN-LLRRMILGGARPDAETYSLLK 456
           N+   ++K         YN LIK +  K K+ + N LL  M+  G  P+  TY +L+
Sbjct: 530 NVRTLMEKKGRRANIVTYNVLIKGFCNKGKLEEANRLLNEMLEKGLIPNRTTYDILR 586



 Score = 80.1 bits (196), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 84/364 (23%), Positives = 145/364 (39%), Gaps = 78/364 (21%)

Query: 94  NELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNIL 153
           N ++ + LV A +  G + L+LE   +    G  +S L  N +++     GR   + ++ 
Sbjct: 158 NSIIVDMLVWAYVKNGEMDLALEGFDRAGDYGFRLSALSCNPMLVSLVKEGRIGVVESVY 217

Query: 154 RQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVA 213
           ++M   ++  +V TF +++         +    V  DMK     P+ ++Y          
Sbjct: 218 KEMIRRRIGVNVVTFDVVINGLCKVGKFQKAGDVVEDMKAWGFSPSVITY---------- 267

Query: 214 RLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSKSYV 273
              T+ + Y +A                    G + K   L +     +  PN    ++ 
Sbjct: 268 --NTIIDGYCKA--------------------GKMFKADALLKEMVAKRIHPN--EITFN 303

Query: 274 LAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMN 333
           + I+ F R   V+ A++++ EMQ          YNS+I+  C NG +D+A GL  +MS  
Sbjct: 304 ILIDGFCRDENVTAAKKVFEEMQRQGLQPNVVTYNSLINGLCSNGKLDEALGLQDKMSGM 363

Query: 334 GCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAE 393
           G KPN +TY  L  G  K  +++E                                    
Sbjct: 364 GLKPNVVTYNALINGFCKKKMLKE------------------------------------ 387

Query: 394 KGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKA-KINDPNLLRRMILG-GARPDAET 451
                 A  + +++ K         +NTLI AY KA +++D  LLR M+L  G  P+  T
Sbjct: 388 ------AREMLDDIGKRGLAPNVITFNTLIDAYGKAGRMDDAFLLRSMMLDTGVCPNVST 441

Query: 452 YSLL 455
           Y+ L
Sbjct: 442 YNCL 445



 Score = 60.8 bits (146), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 87/404 (21%), Positives = 155/404 (38%), Gaps = 52/404 (12%)

Query: 10  VGSAFQSWMREGFPVHRGEIFHSINRLRKLQLNKRALEVMEWVIRERPYRPKELDYSYLL 69
           V S ++  +R    V+       IN L K+   ++A +V+E  ++   + P  + Y+ ++
Sbjct: 213 VESVYKEMIRRRIGVNVVTFDVVINGLCKVGKFQKAGDVVE-DMKAWGFSPSVITYNTII 271

Query: 70  EFTIKNHGISQGEKLF--CCIPKDYQNELLYNNLVIA-CLDKGVIKLSLEYMKKMRVLGH 126
           +   K   + + + L       + + NE+ +N L+   C D+ V                
Sbjct: 272 DGYCKAGKMFKADALLKEMVAKRIHPNEITFNILIDGFCRDENVT--------------- 316

Query: 127 SISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMK 186
                                    +  +M+   + P+V T++ L+    ++  ++  + 
Sbjct: 317 ---------------------AAKKVFEEMQRQGLQPNVVTYNSLINGLCSNGKLDEALG 355

Query: 187 VYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYG 246
           +   M    ++PN V+Y  L       ++   A   ++ + K     N  T + LI  YG
Sbjct: 356 LQDKMSGMGLKPNVVTYNALINGFCKKKMLKEAREMLDDIGKRGLAPNVITFNTLIDAYG 415

Query: 247 YLAKGKD---LERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKA 303
              +  D   L  +       PNV   +Y   I  F R   V  A +L  EM+       
Sbjct: 416 KAGRMDDAFLLRSMMLDTGVCPNV--STYNCLIVGFCREGNVKEARKLAKEMEGNGLKAD 473

Query: 304 TEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALE 363
              YN ++   CK G   KA  LL EM   G  P+ +TY  L  G F+     EG     
Sbjct: 474 LVTYNILVDALCKKGETRKAVRLLDEMFEVGLNPSHLTYNALIDGYFR-----EGNSTAA 528

Query: 364 LGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEEL 407
           L ++ +  KK R +   + T   +I+ F  KG +  A  L  E+
Sbjct: 529 LNVRTLMEKKGRRAN--IVTYNVLIKGFCNKGKLEEANRLLNEM 570


>gi|125602942|gb|EAZ42267.1| hypothetical protein OsJ_26834 [Oryza sativa Japonica Group]
          Length = 1088

 Score = 85.5 bits (210), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 95/387 (24%), Positives = 156/387 (40%), Gaps = 35/387 (9%)

Query: 102 VIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKV 161
           +IA  D G  + +      M+  G   +   +  LI      G  K    +  +M  D V
Sbjct: 497 IIALCDMGCYEDAWRLFVDMKNKGCEPNVYTYTALISGLCVSGLLKVAIGLFHRMSRDGV 556

Query: 162 APHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAET 221
            P+  T++ L+ I   +  I+    V + M R+ +  N V+Y  +   + +      A  
Sbjct: 557 FPNTVTYNALINILVENRRIKYAFVVLNLMGRNGLFTNIVTYNEMIKGYCILGDPKKAML 616

Query: 222 YVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLE--RIWATVQELPNVRSK-SYVLAIEA 278
            +  + +     N  T + +I   GY   G      RI   +++      + SY   I  
Sbjct: 617 VMNNMLQRGHSANLVTYNTII--KGYCDSGNTTSALRILDLMRDGGCKPDEWSYTELICG 674

Query: 279 FGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPN 338
           F +I+++  A  L+ EM           Y ++I  YCK+  +D A+ LL+ M  +GC+PN
Sbjct: 675 FCKISKMESAFGLFNEMVDDGLCPNEVTYTALIDGYCKDEKLDTATSLLEHMKRSGCRPN 734

Query: 339 AITYRHLALGCFKSN-----------LVEEGF-----------------KALELGMKLIT 370
             TY  L  G  K N           ++EEG                   +  L +++  
Sbjct: 735 VQTYNVLIHGLTKQNNFSGAEELCKVMIEEGIFPNVVTYTAMIDGLCKNGSTSLALEMFN 794

Query: 371 TKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYV-KA 429
               +   P L T  S+I    ++G V  AENLF EL++         Y  +I+AY+   
Sbjct: 795 KMIEQGCLPNLLTYSSLIRALGQEGKVEEAENLFAELERHGLIPDEITYVKMIEAYIMSG 854

Query: 430 KINDP-NLLRRMILGGARPDAETYSLL 455
           K+    N L RMI  G +P   TY +L
Sbjct: 855 KVEHAFNFLGRMIKAGCQPTLWTYGVL 881



 Score = 64.7 bits (156), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 78/362 (21%), Positives = 144/362 (39%), Gaps = 47/362 (12%)

Query: 98  YNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMK 157
           Y+ L+I     G+    ++   +M   G   + L++N +I      G       I++++ 
Sbjct: 353 YSALLIHLSRLGMTAAVMDRYHRMLSEGVQPNLLIYNAVINALCKDGNVADAETIMKKVF 412

Query: 158 ADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYT 217
             +++P   T+  ++      H+++  ++V++ M +   EPN V+Y              
Sbjct: 413 ESEMSPDTFTYTSMILGHCRKHDLDSALQVFNQMAKEGCEPNTVTY-------------- 458

Query: 218 VAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSKSYVLAIE 277
              T +  L  S   N    L   +IL+G L                    + +    I 
Sbjct: 459 --STLINGLCDSGRVNEAFDLIREMILHGILPT------------------AHTCTGPII 498

Query: 278 AFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKP 337
           A   +     A  L+++M++         Y ++IS  C +G +  A GL   MS +G  P
Sbjct: 499 ALCDMGCYEDAWRLFVDMKNKGCEPNVYTYTALISGLCVSGLLKVAIGLFHRMSRDGVFP 558

Query: 338 NAITYRHLALGCFKSNLVEEGFKALEL-GMKLITTKKVRSSTPWLETTLSIIEIFAEKGD 396
           N +TY  L     ++  ++  F  L L G   + T  V        T   +I+ +   GD
Sbjct: 559 NTVTYNALINILVENRRIKYAFVVLNLMGRNGLFTNIV--------TYNEMIKGYCILGD 610

Query: 397 VGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKINDPNLLRRMIL---GGARPDAETYS 453
              A  +   + +  ++     YNT+IK Y  +  N  + LR + L   GG +PD  +Y+
Sbjct: 611 PKKAMLVMNNMLQRGHSANLVTYNTIIKGYCDSG-NTTSALRILDLMRDGGCKPDEWSYT 669

Query: 454 LL 455
            L
Sbjct: 670 EL 671



 Score = 62.4 bits (150), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 68/310 (21%), Positives = 128/310 (41%), Gaps = 11/310 (3%)

Query: 60  PKELDYSYLLEFTIKNHGISQGEKLFCCIPKD--YQNELLYNNLVIACLDKGVIKLSLEY 117
           P  + Y+ L+   ++N  I     +   + ++  + N + YN ++      G  K ++  
Sbjct: 558 PNTVTYNALINILVENRRIKYAFVVLNLMGRNGLFTNIVTYNEMIKGYCILGDPKKAMLV 617

Query: 118 MKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEAN 177
           M  M   GHS + + +N +I      G   +   IL  M+     P   ++  L+     
Sbjct: 618 MNNMLQRGHSANLVTYNTIIKGYCDSGNTTSALRILDLMRDGGCKPDEWSYTELICGFCK 677

Query: 178 DHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWST 237
              +E    ++++M    + PNEV+Y  L   +        A + +E +++S    N  T
Sbjct: 678 ISKMESAFGLFNEMVDDGLCPNEVTYTALIDGYCKDEKLDTATSLLEHMKRSGCRPNVQT 737

Query: 238 LDVLIILYGY-----LAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELW 292
            +VLI  +G       +  ++L ++       PNV   +Y   I+   +    S A E++
Sbjct: 738 YNVLI--HGLTKQNNFSGAEELCKVMIEEGIFPNV--VTYTAMIDGLCKNGSTSLALEMF 793

Query: 293 LEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKS 352
            +M     L     Y+S+I    + G +++A  L  E+  +G  P+ ITY  +      S
Sbjct: 794 NKMIEQGCLPNLLTYSSLIRALGQEGKVEEAENLFAELERHGLIPDEITYVKMIEAYIMS 853

Query: 353 NLVEEGFKAL 362
             VE  F  L
Sbjct: 854 GKVEHAFNFL 863



 Score = 44.3 bits (103), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 59/291 (20%), Positives = 113/291 (38%), Gaps = 16/291 (5%)

Query: 59   RPKELDYSYLLEFTIKNHGISQGEKLFCCIPKD--YQNELLYNNLVIACLDKGVIKLSLE 116
            RP    Y+ L+    K +  S  E+L   + ++  + N + Y  ++      G   L+LE
Sbjct: 732  RPNVQTYNVLIHGLTKQNNFSGAEELCKVMIEEGIFPNVVTYTAMIDGLCKNGSTSLALE 791

Query: 117  YMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEA 176
               KM   G   + L ++ LI      G+ +   N+  +++   + P   T+  +++   
Sbjct: 792  MFNKMIEQGCLPNLLTYSSLIRALGQEGKVEEAENLFAELERHGLIPDEITYVKMIEAYI 851

Query: 177  NDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWS 236
                +E        M ++  +P   +Y +L     +   Y +A+  + AL   +   +  
Sbjct: 852  MSGKVEHAFNFLGRMIKAGCQPTLWTYGVLI--KGLKNEYLLADQRLAALPDVVPNCS-- 907

Query: 237  TLDVLIILYGYLAKGKDLERIW-ATVQEL-PNVRSKSYVLAIEAFGRIAQVSRAEELWLE 294
                    +GY    +D   +  A + EL P +  +     +       +   A EL   
Sbjct: 908  --------FGYQTTDQDAVSVMSAKLAELDPGLSVQVQNALVSNLSTAGRWFEANELLGS 959

Query: 295  MQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHL 345
            M S       E YNS++    +   +D A G+ K MS  GC+ +   Y+ L
Sbjct: 960  MISQGLCPDQEAYNSLLCSLLRVRNVDLAMGVFKHMSTQGCEVHLNGYKEL 1010


>gi|356533844|ref|XP_003535468.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g23020-like [Glycine max]
          Length = 813

 Score = 85.5 bits (210), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 96/392 (24%), Positives = 171/392 (43%), Gaps = 44/392 (11%)

Query: 98  YNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMK 157
           YN L+      G +K + E   KM   G + + + FN +I +  + G+ + +  ++R+M+
Sbjct: 276 YNTLIDTYGKAGQLKEASETFAKMLKQGVAPTTVTFNTMINICGNHGQLEEVSLLVRKME 335

Query: 158 ADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYT 217
             + +P+  T++IL+ + A   +I    K +  MK + +EP+ VSY  L  A+++ ++  
Sbjct: 336 ELRCSPNTRTYNILISLYAKHDDIGMATKYFEIMKEACLEPDLVSYRTLLYAYSIRKMVG 395

Query: 218 VAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIW-ATVQELPNVRSKSYVLAI 276
            AE  V+ +++     +  T   L  +Y   A   D   +W        N+ S+ Y  +I
Sbjct: 396 EAEELVKEMDERRLEIDQYTQSALTRMY-IKAGMLDQSLLWFLRFHVAGNMTSECYAASI 454

Query: 277 EAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCK 336
           +A+G       AE++++  Q  K L   E +N +I  Y      +KA  L   M  +G  
Sbjct: 455 DAYGEHGHTLEAEKVFIWSQKQKNLSVLE-FNVMIKAYGIGKCYEKACQLFDSMEQHGVV 513

Query: 337 PNAITYR------------HLALGCFK----SNLVEE------------GFKALELGMKL 368
            +  +Y             H+A    K    + LV +                LE+   +
Sbjct: 514 ADRCSYTSLIQILTTSDQPHMAKPYLKKMQEAGLVSDCIPYCVVICSFAKLGQLEMAEDI 573

Query: 369 ITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVK 428
                     P +     +I +F++ G V  A +  +E+KKA     T +YN+LIK Y  
Sbjct: 574 YWEMIRHGVQPDVIVYSILINVFSDAGRVKEAISYVDEMKKAGLPGNTVIYNSLIKLY-- 631

Query: 429 AKINDPNLLRRMILGGARPDAETYSLLKLAEQ 460
           AKI+  NL +           E Y LL+L+E+
Sbjct: 632 AKID--NLEKAQ---------EAYKLLQLSEE 652



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 72/320 (22%), Positives = 141/320 (44%), Gaps = 38/320 (11%)

Query: 125 GHSISYLVFNRLIILNSSPGRRKT---IPNILRQMKADKVAPHVSTFHILMKIEANDHNI 181
           GH ++ + +N   I+  S GR +    + ++  +M A  +A   ST+  L+ + +     
Sbjct: 146 GHELNTIHYN---IMLRSLGRARQWRRVESLWNEMNARGIAATCSTYGTLIDVYSKGGRR 202

Query: 182 EGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNN--WSTLD 239
           +  +     M    V+P+EV+  I+   +  A  +  AE   E  +K   GN+   +TL+
Sbjct: 203 DDALSWLDMMLGQGVQPDEVTMVIVVQLYKKAGEFQKAE---EFFKKWSLGNDNAMATLE 259

Query: 240 VLIILYGYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVK 299
           +              ER+   V    +  S +Y   I+ +G+  Q+  A E + +M    
Sbjct: 260 LD-------------ERV---VCANASFGSHTYNTLIDTYGKAGQLKEASETFAKMLKQG 303

Query: 300 QLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGF 359
               T  +N++I++   +G +++ S L+++M    C PN  TY         + L+    
Sbjct: 304 VAPTTVTFNTMINICGNHGQLEEVSLLVRKMEELRCSPNTRTY---------NILISLYA 354

Query: 360 KALELGM--KLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTF 417
           K  ++GM  K     K     P L +  +++  ++ +  VG AE L +E+ +       +
Sbjct: 355 KHDDIGMATKYFEIMKEACLEPDLVSYRTLLYAYSIRKMVGEAEELVKEMDERRLEIDQY 414

Query: 418 VYNTLIKAYVKAKINDPNLL 437
             + L + Y+KA + D +LL
Sbjct: 415 TQSALTRMYIKAGMLDQSLL 434



 Score = 41.6 bits (96), Expect = 0.80,   Method: Compositional matrix adjust.
 Identities = 60/278 (21%), Positives = 123/278 (44%), Gaps = 12/278 (4%)

Query: 117 YMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEA 176
           Y+KKM+  G     + +  +I   +  G+ +   +I  +M    V P V  + IL+ + +
Sbjct: 538 YLKKMQEAGLVSDCIPYCVVICSFAKLGQLEMAEDIYWEMIRHGVQPDVIVYSILINVFS 597

Query: 177 NDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHA-VARLYTVAETYVEALEKSMTGNNW 235
           +   ++  +    +MK++ +  N V Y  L   +A +  L    E Y + L+ S  G N 
Sbjct: 598 DAGRVKEAISYVDEMKKAGLPGNTVIYNSLIKLYAKIDNLEKAQEAY-KLLQLSEEGPNV 656

Query: 236 STLDVLIILYGYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEM 295
            + + +I LY   +     ++I+ T+++       ++ + +  + +I +   A ++  ++
Sbjct: 657 YSSNCMIDLYVKQSMVGQAKQIFDTLKKNGGANEFTFAMMLCLYKKIERFDEAIQIAKQI 716

Query: 296 QSVKQLKATE-QYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNL 354
           + +  L  TE  YN+V+ +Y   G   +A    KEM     + N  + R L      + L
Sbjct: 717 RKLGPL--TELSYNNVLDLYAIAGRPKEAIETFKEMVRASIQVNDCSLRSLG-----NLL 769

Query: 355 VEEGFKALELGMKLITTKKVRSS--TPWLETTLSIIEI 390
           +  G   L +G      KK  S+    W+    S++E+
Sbjct: 770 LRYGVSRLAVGKLEALVKKDASNGLQAWMLALSSVLEV 807


>gi|224141335|ref|XP_002324029.1| predicted protein [Populus trichocarpa]
 gi|222867031|gb|EEF04162.1| predicted protein [Populus trichocarpa]
          Length = 629

 Score = 85.5 bits (210), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 91/386 (23%), Positives = 172/386 (44%), Gaps = 38/386 (9%)

Query: 43  KRALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQGEKLF------CCIPKDYQNEL 96
           +R+L +++W+     Y P    Y+ +L   ++         LF         P  Y    
Sbjct: 88  QRSLALLDWINDIARYSPSVFAYNVVLRNVLRAKQWDHAHGLFDEMRNRALAPDRYT--- 144

Query: 97  LYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQM 156
            Y+ L+      G+   SL ++++M     S   ++++ LI L+          +I  ++
Sbjct: 145 -YSTLITHFGKAGMFDASLFWLQQMEQDRVSGDLVLYSNLIELSRKLCDYSKAISIFMRL 203

Query: 157 KADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLY 216
           K   + P +  ++ ++ +            +  +M+   V P+ VSY  L +      +Y
Sbjct: 204 KRSGIMPDLVAYNSMINVFGKAKLFREAKLLMKEMREVGVMPDTVSYSTLLS------VY 257

Query: 217 TVAETYVEALEKSMTGN------NWSTLDVLIILYGYLAKGKDLERIWATVQEL---PNV 267
              E +VEAL      N      + +T +V+I +YG L   K+ +R++ +++++   PNV
Sbjct: 258 VENEKFVEALSVFAEMNEAKCPLDLTTCNVMIDVYGQLDMAKEADRLFWSMRKMGIEPNV 317

Query: 268 RSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLL 327
            S + +L +  +G       A  L+  MQ     +    YN++I VY K+   +KA+ L+
Sbjct: 318 VSYNTLLRV--YGETELFGEAIHLFRLMQKKDIEQNVVTYNTMIKVYGKSLEHEKATNLM 375

Query: 328 KEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTL-- 385
           +EM   G +PNAITY         S ++    KA +L    +  +K+RSS   ++  L  
Sbjct: 376 QEMQNRGIEPNAITY---------STIISIWGKAGKLDRAAMLFQKLRSSGVEIDQVLYQ 426

Query: 386 SIIEIFAEKGDVGNAENLFEELKKAN 411
           ++I  +   G V +A+ L  ELK  +
Sbjct: 427 TMIVAYERSGLVAHAKRLLHELKHPD 452



 Score = 59.7 bits (143), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 62/302 (20%), Positives = 135/302 (44%), Gaps = 20/302 (6%)

Query: 160 KVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVA 219
           + +P V  ++++++        +    ++ +M+   + P+  +Y  L T    A ++  +
Sbjct: 102 RYSPSVFAYNVVLRNVLRAKQWDHAHGLFDEMRNRALAPDRYTYSTLITHFGKAGMFDAS 161

Query: 220 ETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQE---LPNVRSKSYVLAI 276
             +++ +E+     +      LI L   L        I+  ++    +P++   +Y   I
Sbjct: 162 LFWLQQMEQDRVSGDLVLYSNLIELSRKLCDYSKAISIFMRLKRSGIMPDL--VAYNSMI 219

Query: 277 EAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCK 336
             FG+      A+ L  EM+ V  +  T  Y++++SVY +N    +A  +  EM+   C 
Sbjct: 220 NVFGKAKLFREAKLLMKEMREVGVMPDTVSYSTLLSVYVENEKFVEALSVFAEMNEAKCP 279

Query: 337 PNAITYRHLALGCFKSNLVEEGFKALELGM---KLITTKKVRSSTPWLETTLSIIEIFAE 393
            +  T       C   N++ + +  L++     +L  + +     P + +  +++ ++ E
Sbjct: 280 LDLTT-------C---NVMIDVYGQLDMAKEADRLFWSMRKMGIEPNVVSYNTLLRVYGE 329

Query: 394 KGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKIND--PNLLRRMILGGARPDAET 451
               G A +LF  ++K +  +    YNT+IK Y K+  ++   NL++ M   G  P+A T
Sbjct: 330 TELFGEAIHLFRLMQKKDIEQNVVTYNTMIKVYGKSLEHEKATNLMQEMQNRGIEPNAIT 389

Query: 452 YS 453
           YS
Sbjct: 390 YS 391


>gi|225434273|ref|XP_002276453.1| PREDICTED: pentatricopeptide repeat-containing protein At5g65560
           [Vitis vinifera]
 gi|296084392|emb|CBI24780.3| unnamed protein product [Vitis vinifera]
          Length = 890

 Score = 85.5 bits (210), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 103/442 (23%), Positives = 181/442 (40%), Gaps = 57/442 (12%)

Query: 59  RPKELDYSYLLEFTIKNHGISQGEKLFCCIPKD--YQNELLYNNLVIACLDKGVIKLSLE 116
            P    Y+ L+    +N G+    ++F  +P+    +NE+ Y NL+    + G I  +L+
Sbjct: 226 HPDTFTYTSLILGHCRNKGVDNAYEVFLIMPQKGCQRNEVSYTNLIHGLCEAGRINEALK 285

Query: 117 YMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEA 176
               M       +   +  LI   S  GR+    N+  +MK     P+V T+ +L+    
Sbjct: 286 LFADMTEDNCCPTVRTYTVLIYALSGSGRKVEALNLFNEMKEKGCEPNVHTYTVLIDGLC 345

Query: 177 NDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWS 236
            ++ ++   K+ S+M    + P+ V+Y  L   +    +   A   ++ +E +  G N  
Sbjct: 346 KENKMDEARKMLSEMSEKGLIPSVVTYNALIDGYCKEGMIDDAFEILDLMESNSCGPNTR 405

Query: 237 TLDVLI----------------------------ILYGYLAKGK----DLE---RIWATV 261
           T + LI                            I Y  L  G+    DLE   R+ + +
Sbjct: 406 TYNELICGLCKKRKVHKAMALLNKMLERKLSPSLITYNSLIHGQCKVNDLESAYRLLSLM 465

Query: 262 QELPNVRSK-SYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQ-YNSVISVYCKNGF 319
            E   V  + +Y + I+   +  +V  A  L+  +++ K +KA E  Y ++I  YCK G 
Sbjct: 466 NENGLVPDQWTYSVFIDTLCKEGRVEEAGTLFDSVKA-KGVKANEVIYTALIDGYCKVGK 524

Query: 320 IDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEG----FKALELGMKLITTKKVR 375
           ID A  LL+ M  + C PN+ TY  L  G  K   ++E      K L +G+K        
Sbjct: 525 IDVAYSLLERMLNDACLPNSYTYNVLIEGLCKEKKMKEASSLVAKMLTMGVK-------- 576

Query: 376 SSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKIND-- 433
              P + T   +I    + G   +A  +F  +    Y      Y   + AY    + +  
Sbjct: 577 ---PTVVTYTILIGEMLKDGAFDHALKVFNHMVSLGYQPDVCTYTAFLHAYFSQGMLEEV 633

Query: 434 PNLLRRMILGGARPDAETYSLL 455
            +++ +M   G  PD  TY++L
Sbjct: 634 DDVIAKMNEEGILPDLVTYTVL 655



 Score = 49.7 bits (117), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 89/453 (19%), Positives = 169/453 (37%), Gaps = 40/453 (8%)

Query: 29  IFHSINRLRKLQLNKRALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQGEKLFCCI 88
           + H   ++  L+   R L +M     E    P +  YS  ++   K   + +   LF  +
Sbjct: 445 LIHGQCKVNDLESAYRLLSLM----NENGLVPDQWTYSVFIDTLCKEGRVEEAGTLFDSV 500

Query: 89  PKD--YQNELLYNNLVIACLDKGVIKLSLEYMKKM---RVLGHSISYLVFNRLIILNSSP 143
                  NE++Y  L+      G I ++   +++M     L +S +Y   N LI      
Sbjct: 501 KAKGVKANEVIYTALIDGYCKVGKIDVAYSLLERMLNDACLPNSYTY---NVLIEGLCKE 557

Query: 144 GRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSY 203
            + K   +++ +M    V P V T+ IL+     D   +  +KV++ M     +P+  +Y
Sbjct: 558 KKMKEASSLVAKMLTMGVKPTVVTYTILIGEMLKDGAFDHALKVFNHMVSLGYQPDVCTY 617

Query: 204 CILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLA---KGKDLERIWAT 260
                A+    +    +  +  + +     +  T  VLI  Y  L    +  D  +    
Sbjct: 618 TAFLHAYFSQGMLEEVDDVIAKMNEEGILPDLVTYTVLIDGYARLGLTHRAFDFLKCMVD 677

Query: 261 VQELPNVRSKSYVL----------------AIEAFGRIAQVSRAEELWLEMQSVKQLKAT 304
               P++   S ++                 I++     +   A +L+ +M         
Sbjct: 678 TGCKPSLYIVSILIKNLSHENRMKETRSEIGIDSVSNTLEYEIALKLFEKMVEHGCTIDV 737

Query: 305 EQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALEL 364
             Y ++I+ +C+   +++A GL+  M   G  P+   Y  L   C K  +  E       
Sbjct: 738 SIYGALIAGFCQQERLEEAQGLVHHMKERGMSPSEDIYNSLLDCCCKLGVYAE------- 790

Query: 365 GMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIK 424
            ++L+         P LE+   ++     +G    A+ +F  L    Y      +  LI 
Sbjct: 791 AVRLVDAMVENGLLPLLESYKLLVCGLYIEGSNEKAKAVFHGLLSCGYNYDEVAWKVLID 850

Query: 425 AYVKAKIND--PNLLRRMILGGARPDAETYSLL 455
             +K  + D    L+  M   G +P+  TYSLL
Sbjct: 851 GLLKRDLVDECSELIDIMEEKGCQPNPLTYSLL 883


>gi|297823811|ref|XP_002879788.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297325627|gb|EFH56047.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 867

 Score = 85.5 bits (210), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 73/273 (26%), Positives = 124/273 (45%), Gaps = 19/273 (6%)

Query: 191 MKRSEVEPNEVSYCILATAHAVARLYTVAET-YVEALEKSMTGNNWSTLDVLIILYGYLA 249
           M+   +EPN V Y  +  AH   +   +A + + E LEK +  NN++     I++ G+  
Sbjct: 475 MENKGIEPNVVFYNNMMLAHCRMKNMDLARSIFSEMLEKGLQPNNFT---YSILIDGFF- 530

Query: 250 KGKDLERIWATVQEL--PNVRSKS--YVLAIEAFGRIAQVSRAEELWLEMQSVKQLK-AT 304
           K +D +  W  + ++   N  +    Y   I    ++ Q S+A+E+   +   K+     
Sbjct: 531 KNQDEQNAWEVINQMIASNFEANEVIYNTIINGLCKVGQTSKAKEMLQNLIKEKRYSMGC 590

Query: 305 EQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALEL 364
             YNS+I  + K G  D A    +EMS NG  PN +T+  L  G  KSN        ++L
Sbjct: 591 TSYNSIIDGFFKEGDTDSAVEAYREMSENGISPNVVTFTSLINGFCKSN-------RMDL 643

Query: 365 GMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIK 424
            +++I   K +     +    ++I+ F +K D+  A  LF EL +        VYN LI 
Sbjct: 644 ALEMIHEMKSKDLKLDVPAYGALIDGFCKKNDMKTAYTLFSELLELGLMPNVSVYNNLIS 703

Query: 425 AYVKAKINDP--NLLRRMILGGARPDAETYSLL 455
            +      D   +L ++M+  G   D  TY+ +
Sbjct: 704 GFRNLGKMDAAIDLYKKMVNDGISCDLFTYTTM 736



 Score = 42.7 bits (99), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 71/371 (19%), Positives = 145/371 (39%), Gaps = 50/371 (13%)

Query: 96  LLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQ 155
            + N + +    +G +  +  +++ M   G   + + +N +++ +          +I  +
Sbjct: 450 FMCNKIFLLLCKQGKVDAATSFLRMMENKGIEPNVVFYNNMMLAHCRMKNMDLARSIFSE 509

Query: 156 MKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARL 215
           M    + P+  T+ IL+     + + +   +V + M  S  E NEV Y  +         
Sbjct: 510 MLEKGLQPNNFTYSILIDGFFKNQDEQNAWEVINQMIASNFEANEVIYNTIINGLCKVGQ 569

Query: 216 YTVAETYVEALEK----SMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQEL------P 265
            + A+  ++ L K    SM   ++++     I+ G+  +G D +      +E+      P
Sbjct: 570 TSKAKEMLQNLIKEKRYSMGCTSYNS-----IIDGFFKEG-DTDSAVEAYREMSENGISP 623

Query: 266 NVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLK-ATEQYNSVISVYCKNGFIDKAS 324
           NV   ++   I  F +  ++  A E+  EM+S K LK     Y ++I  +CK   +  A 
Sbjct: 624 NV--VTFTSLINGFCKSNRMDLALEMIHEMKS-KDLKLDVPAYGALIDGFCKKNDMKTAY 680

Query: 325 GLLKEMSMNGCKPNAITYRHLALGCFKS------------NLVEEGFKALELGMKLITTK 372
            L  E+   G  PN   Y +L  G F++             +V +G          +   
Sbjct: 681 TLFSELLELGLMPNVSVYNNLISG-FRNLGKMDAAIDLYKKMVNDGISCDLFTYTTMIDG 739

Query: 373 KVRSSTPWLETTL-----------------SIIEIFAEKGDVGNAENLFEELKKANYTKY 415
            ++     L + L                  ++   ++KG    A  + EE+KK + T  
Sbjct: 740 LLKDGNLILASDLYSELLALGIVPDEILYVVLVNGLSKKGQFVRASKMLEEMKKKDATPN 799

Query: 416 TFVYNTLIKAY 426
             +Y+T+I  +
Sbjct: 800 VLIYSTVIAGH 810



 Score = 42.0 bits (97), Expect = 0.63,   Method: Compositional matrix adjust.
 Identities = 60/318 (18%), Positives = 132/318 (41%), Gaps = 20/318 (6%)

Query: 55  ERPYRPKELDYSYLLEFTIKNHGISQG-EKLFCCIPKDYQ-NELLYNNLVIACLDKGVIK 112
           E+  +P    YS L++   KN       E +   I  +++ NE++YN ++      G   
Sbjct: 512 EKGLQPNNFTYSILIDGFFKNQDEQNAWEVINQMIASNFEANEVIYNTIINGLCKVGQTS 571

Query: 113 LSLEYMKKM-RVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHIL 171
            + E ++ + +   +S+    +N +I      G   +     R+M  + ++P+V TF  L
Sbjct: 572 KAKEMLQNLIKEKRYSMGCTSYNSIIDGFFKEGDTDSAVEAYREMSENGISPNVVTFTSL 631

Query: 172 MKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAET-YVEALEKSM 230
           +      + ++  +++  +MK  +++ +  +Y  L            A T + E LE  +
Sbjct: 632 INGFCKSNRMDLALEMIHEMKSKDLKLDVPAYGALIDGFCKKNDMKTAYTLFSELLELGL 691

Query: 231 TGNNWSTLDVLIILYGYLAKG-KDLERIWATVQELPNVRSK-------SYVLAIEAFGRI 282
             N        + +Y  L  G ++L ++ A +     + +        +Y   I+   + 
Sbjct: 692 MPN--------VSVYNNLISGFRNLGKMDAAIDLYKKMVNDGISCDLFTYTTMIDGLLKD 743

Query: 283 AQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITY 342
             +  A +L+ E+ ++  +     Y  +++   K G   +AS +L+EM      PN + Y
Sbjct: 744 GNLILASDLYSELLALGIVPDEILYVVLVNGLSKKGQFVRASKMLEEMKKKDATPNVLIY 803

Query: 343 RHLALGCFKSNLVEEGFK 360
             +  G  +   + E F+
Sbjct: 804 STVIAGHHREGNLNEAFR 821



 Score = 41.2 bits (95), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 64/314 (20%), Positives = 121/314 (38%), Gaps = 24/314 (7%)

Query: 152 ILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCI-LATAH 210
           I  +M    VA    T  +LM+    +   E  MK++  +     EP+ + + + +  A 
Sbjct: 226 IYNKMVLIGVAGDNVTTQLLMRASLRERKPEEAMKIFRRVMSRGAEPDGLLFSLAVQAAC 285

Query: 211 AVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSK 270
            +  L    +   E  EK     +  T   +I+      K  ++E       E+      
Sbjct: 286 KMKDLVMALDLLREMREKGGVPASQETYTSVIV---ACVKEGNMEEAVKVKDEMVGFGIP 342

Query: 271 SYVLA----IEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGL 326
             V+A    I  F    ++ +A + +  M+          ++ +I  +CKN  ++KA  +
Sbjct: 343 MSVIAATSLITGFCNGNELGKALDFFNRMEEEGLAPDKVMFSVMIEWFCKNMEMEKAVEI 402

Query: 327 LKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLS 386
            K M   G  P+++    +  GC K+   E    ALE+      T        W+     
Sbjct: 403 YKRMKSVGIAPSSVLVHKMIQGCLKA---ESPEAALEIFNDSFET--------WIAHGFM 451

Query: 387 IIEIF---AEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKIND--PNLLRRMI 441
             +IF    ++G V  A +    ++          YN ++ A+ + K  D   ++   M+
Sbjct: 452 CNKIFLLLCKQGKVDAATSFLRMMENKGIEPNVVFYNNMMLAHCRMKNMDLARSIFSEML 511

Query: 442 LGGARPDAETYSLL 455
             G +P+  TYS+L
Sbjct: 512 EKGLQPNNFTYSIL 525


>gi|357460281|ref|XP_003600422.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355489470|gb|AES70673.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 512

 Score = 85.5 bits (210), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 81/333 (24%), Positives = 139/333 (41%), Gaps = 41/333 (12%)

Query: 96  LLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQ 155
           ++YN ++       ++  + ++  +M       + + +N LI      G+ K    +L +
Sbjct: 210 VMYNTIIDGVCKDKLVNDAFDFYSEMVAKRICPTVVTYNTLICGLCIMGQLKDAIGLLHK 269

Query: 156 MKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARL 215
           M  + + P V TF IL+     +  ++    V+  M + +V+PN V+Y  L   + +   
Sbjct: 270 MILENINPTVYTFSILVDAFCKEGKVKEAKNVFVVMMKKDVKPNIVTYNSLMNGYCLVNE 329

Query: 216 YTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSKSYVLA 275
              AE+    +                                A +   P+V S  Y + 
Sbjct: 330 VNKAESIFNTM--------------------------------AQIGVAPDVHS--YSIM 355

Query: 276 IEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGC 335
           I  F +I  V  A +L+ EM   +       YNS+I   CK+G I  A  L+ EM   G 
Sbjct: 356 ISGFCKIKMVDEAMKLFEEMHCKQIFPDVVTYNSLIDGLCKSGRISYALKLIGEMHDRGQ 415

Query: 336 KPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKG 395
            PN ITY  L     K++ V+   KA+EL  KL    K  +  P + T   +I    + G
Sbjct: 416 PPNIITYNSLLDALCKNHHVD---KAIELLTKL----KDHNIQPSVCTYNILINGLCKSG 468

Query: 396 DVGNAENLFEELKKANYTKYTFVYNTLIKAYVK 428
            + +A+ +FE++    Y    + YNT+IK + K
Sbjct: 469 RLKDAQKVFEDVLVNGYNIDVYTYNTMIKGFCK 501



 Score = 46.2 bits (108), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 71/355 (20%), Positives = 145/355 (40%), Gaps = 30/355 (8%)

Query: 21  GFPVHRGEIFHSINRLRKLQLNKRALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQ 80
           GF +++      IN L K+   K ALE++   I  +  R   + Y+ +++   K+  ++ 
Sbjct: 169 GFQLNQVSYRTLINGLCKVGQTKAALEMLRR-IDGKLVRLDVVMYNTIIDGVCKDKLVND 227

Query: 81  GEKLFCCIPKDYQNELL----------YNNLVIACLDKGVIKLSLEYMKKMRVLGHSISY 130
                     D+ +E++          YN L+      G +K ++  + KM +   + + 
Sbjct: 228 AF--------DFYSEMVAKRICPTVVTYNTLICGLCIMGQLKDAIGLLHKMILENINPTV 279

Query: 131 LVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSD 190
             F+ L+      G+ K   N+   M    V P++ T++ LM      + +     +++ 
Sbjct: 280 YTFSILVDAFCKEGKVKEAKNVFVVMMKKDVKPNIVTYNSLMNGYCLVNEVNKAESIFNT 339

Query: 191 MKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAK 250
           M +  V P+  SY I+ +     ++   A    E +       +  T + LI     L K
Sbjct: 340 MAQIGVAPDVHSYSIMISGFCKIKMVDEAMKLFEEMHCKQIFPDVVTYNSLI---DGLCK 396

Query: 251 GKDLERIWATVQEL------PNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKAT 304
              +      + E+      PN+ + + +L  +A  +   V +A EL  +++      + 
Sbjct: 397 SGRISYALKLIGEMHDRGQPPNIITYNSLL--DALCKNHHVDKAIELLTKLKDHNIQPSV 454

Query: 305 EQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGF 359
             YN +I+  CK+G +  A  + +++ +NG   +  TY  +  G  K   V   F
Sbjct: 455 CTYNILINGLCKSGRLKDAQKVFEDVLVNGYNIDVYTYNTMIKGFCKKGFVIPQF 509


>gi|357139229|ref|XP_003571186.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g16010-like [Brachypodium distachyon]
          Length = 628

 Score = 85.5 bits (210), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 84/370 (22%), Positives = 166/370 (44%), Gaps = 26/370 (7%)

Query: 98  YNNLVIACLDKGVIKLSLEYMKKMRVLGHSI-SYLVFNRLIILNSSPGRRKTIPNILRQM 156
           YN+++I  + +G  +   E   +M   GH     + ++ LI      GR+ +   +L +M
Sbjct: 193 YNSMIIMLMHEGQYEKVHELYNEMSNEGHCFPDTVTYSALISAFCKLGRQDSAIRLLNEM 252

Query: 157 KADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLY 216
           K + + P    + +L+ +    +N+ G + ++ +M+     P+  +Y  L      A  +
Sbjct: 253 KDNGMQPTAKIYTMLIALFFKLNNVHGALGLFEEMRHQYCRPDVFTYTELIRGLGKAGRF 312

Query: 217 TVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIW---ATVQELPNVRSKSYV 273
             A  +   + +     +   ++ +I   G   +  D  +++    T+Q +P+V + + +
Sbjct: 313 DEAYNFFHEMRREGCRPDTVVINNMINFLGKAGRLDDAVKLFEEMGTLQCIPSVVTYNTI 372

Query: 274 LA--IEAFGRIAQVSRAEELWLE-MQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEM 330
           +    E+  RI+++S     W E M+      +   Y+ +I  +CK    +KA  LL+EM
Sbjct: 373 IKALFESKSRISEISS----WFERMKGSGISPSPFTYSILIDGFCKTNRTEKAMMLLEEM 428

Query: 331 SMNGCKPNAITYRHL--ALGCFKS-NLVEEGFKALELGMKLITTKKVRSSTPWLETTLSI 387
              G  P    Y  L  ALG  K  ++  E F+ L+        +   SS+  +   +  
Sbjct: 429 DEKGFPPCPAAYCSLIDALGKAKRYDIAHELFQELK--------ENCGSSSARVYAVM-- 478

Query: 388 IEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKINDPNL--LRRMILGGA 445
           I+   + G + +A NLF+E+ K   T   + YN L+    +A + D  L  +RRM   G 
Sbjct: 479 IKHLGKAGRLDDAVNLFDEMNKLGCTPNVYAYNALMSGLARAGMLDEALTTMRRMQEHGC 538

Query: 446 RPDAETYSLL 455
            PD  +Y+++
Sbjct: 539 IPDINSYNII 548



 Score = 62.4 bits (150), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 67/321 (20%), Positives = 127/321 (39%), Gaps = 16/321 (4%)

Query: 53  IRERPYRPKELDYSYLLEFTIKNHGISQGEKLF------CCIPKDYQNELLYNNLVIACL 106
           +R +  RP    Y+ L+    K     +    F       C P    + ++ NN++    
Sbjct: 287 MRHQYCRPDVFTYTELIRGLGKAGRFDEAYNFFHEMRREGCRP----DTVVINNMINFLG 342

Query: 107 DKGVIKLSLEYMKKMRVLGHSISYLVFNRLI-ILNSSPGRRKTIPNILRQMKADKVAPHV 165
             G +  +++  ++M  L    S + +N +I  L  S  R   I +   +MK   ++P  
Sbjct: 343 KAGRLDDAVKLFEEMGTLQCIPSVVTYNTIIKALFESKSRISEISSWFERMKGSGISPSP 402

Query: 166 STFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEA 225
            T+ IL+      +  E  M +  +M      P   +YC L  A   A+ Y +A    + 
Sbjct: 403 FTYSILIDGFCKTNRTEKAMMLLEEMDEKGFPPCPAAYCSLIDALGKAKRYDIAHELFQE 462

Query: 226 LEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQEL---PNVRSKSYVLAIEAFGRI 282
           L+++   ++     V+I   G   +  D   ++  + +L   PNV   +Y   +    R 
Sbjct: 463 LKENCGSSSARVYAVMIKHLGKAGRLDDAVNLFDEMNKLGCTPNVY--AYNALMSGLARA 520

Query: 283 AQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITY 342
             +  A      MQ    +     YN +++   K G   +A  +L  M  +  KP+A++Y
Sbjct: 521 GMLDEALTTMRRMQEHGCIPDINSYNIILNGLAKTGGPHRAMEMLSNMKQSAIKPDAVSY 580

Query: 343 RHLALGCFKSNLVEEGFKALE 363
             +      + L EE  K ++
Sbjct: 581 NTVLGAMSHAGLFEEAAKLMK 601



 Score = 56.2 bits (134), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 81/408 (19%), Positives = 151/408 (37%), Gaps = 50/408 (12%)

Query: 53  IRERPYRPKELDYSYLLEFTIKNHGISQGEKLFCCIPKDY--QNELLYNNLVIACLDKGV 110
           +++   +P    Y+ L+    K + +     LF  +   Y   +   Y  L+      G 
Sbjct: 252 MKDNGMQPTAKIYTMLIALFFKLNNVHGALGLFEEMRHQYCRPDVFTYTELIRGLGKAGR 311

Query: 111 IKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHI 170
              +  +  +MR  G     +V N +I      GR      +  +M   +  P V T++ 
Sbjct: 312 FDEAYNFFHEMRREGCRPDTVVINNMINFLGKAGRLDDAVKLFEEMGTLQCIPSVVTYNT 371

Query: 171 LMK-IEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKS 229
           ++K +  +   I  +   +  MK S + P+  +Y IL            A   +E +++ 
Sbjct: 372 IIKALFESKSRISEISSWFERMKGSGISPSPFTYSILIDGFCKTNRTEKAMMLLEEMDE- 430

Query: 230 MTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAE 289
                               KG             P   + +Y   I+A G+  +   A 
Sbjct: 431 --------------------KG------------FPPCPA-AYCSLIDALGKAKRYDIAH 457

Query: 290 ELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGC 349
           EL+ E++      +   Y  +I    K G +D A  L  EM+  GC PN   Y  L  G 
Sbjct: 458 ELFQELKENCGSSSARVYAVMIKHLGKAGRLDDAVNLFDEMNKLGCTPNVYAYNALMSGL 517

Query: 350 FKSNLVEEGFKALELGMKLITTKKVR--SSTPWLETTLSIIEIFAEKGDVGNAENLFEEL 407
            ++ +++E          L T ++++     P + +   I+   A+ G    A  +   +
Sbjct: 518 ARAGMLDEA---------LTTMRRMQEHGCIPDINSYNIILNGLAKTGGPHRAMEMLSNM 568

Query: 408 KKANYTKYTFVYNTLIKAYVKAKIND--PNLLRRMILGGARPDAETYS 453
           K++        YNT++ A   A + +    L++ M + G   D  TYS
Sbjct: 569 KQSAIKPDAVSYNTVLGAMSHAGLFEEAAKLMKEMNVLGFEYDLITYS 616


>gi|302770561|ref|XP_002968699.1| hypothetical protein SELMODRAFT_61973 [Selaginella moellendorffii]
 gi|300163204|gb|EFJ29815.1| hypothetical protein SELMODRAFT_61973 [Selaginella moellendorffii]
          Length = 544

 Score = 85.5 bits (210), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 101/417 (24%), Positives = 171/417 (41%), Gaps = 70/417 (16%)

Query: 88  IPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISY----LVFNRLIILNSSP 143
           +P    + +L     +A    G ++ +L +++ MR    S++     LV   L   N S 
Sbjct: 99  LPTSASHNILLRGFFMA----GRVRDALAHLQDMRKSSSSVATGTYNLVLKGLCWENKSA 154

Query: 144 GRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSY 203
            R +      ++MKA  V P + ++HIL+   ++   +     ++S M  S   P+ ++Y
Sbjct: 155 NRLEQAMEFFKEMKASGVEPDLESYHILLSALSDSGRMAEAHALFSAMTCS---PDIMTY 211

Query: 204 CILATAHA-VARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQ 262
            +L   +  + + Y  A++ ++ + K+    N  T  ++I  Y  L K   +E  W    
Sbjct: 212 NVLMDGYCKIGQTYE-AQSLMKEILKAGYEPNVFTYSIIINCYCKLDK---VEEAWEVFM 267

Query: 263 EL------PNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCK 316
           ++      PN  + + ++A   F +   +  A +L+ EM+ +        YN++I   CK
Sbjct: 268 KMIESNCVPNAVTFNTLIA--GFCKAGMLEDAIKLFAEMEKIGCKATIVTYNTLIDSLCK 325

Query: 317 -------------------------------NGFID-----KASGLLKEMSMNGCKPNAI 340
                                           GF D     +A     EM    C PN I
Sbjct: 326 KRGGVYTAVDLFNKLEGAGLTPTIVTYNSLIQGFCDARRLSEAMQYFDEME-GKCAPNVI 384

Query: 341 TYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNA 400
           TY  L  G  K   ++E  K LE         K    TP + T   +I  F + G++ +A
Sbjct: 385 TYSILIDGLCKVRRMKEAAKTLE-------DMKAHGYTPTVVTYGGLINGFCKCGELKSA 437

Query: 401 ENLFEELKKANYTKYTFVYNTLIKAYVKA-KINDP-NLLRRMILGGARPDAETYSLL 455
              FE++K A     T ++NTLI    KA + ND   LL  M   G +PD  TY+ L
Sbjct: 438 LLFFEKMKLAGCAPNTVIFNTLIDGLCKAERANDGLRLLCHMHAEGCKPDVITYNCL 494



 Score = 65.9 bits (159), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 86/408 (21%), Positives = 171/408 (41%), Gaps = 56/408 (13%)

Query: 58  YRPKELDYSYLLEFTIKNHGISQGEKLFCCIPKD--YQNELLYNNLVIACLDKGVIKLSL 115
           + P    Y+ L+    K   + Q   +F  +       N    N L++   + G +  +L
Sbjct: 28  FAPNAHTYNVLIRGFCKGGQMHQAVSVFSDMKSSGLLPNASTMNTLLLGLCEIGQMSSAL 87

Query: 116 EYMKKMRV---LGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILM 172
           +  ++M+    L  S S+ +  R   +    GR +     L+ M+    +    T+++++
Sbjct: 88  KLFREMQAGPFLPTSASHNILLRGFFM---AGRVRDALAHLQDMRKSSSSVATGTYNLVL 144

Query: 173 KI----EANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEK 228
           K       + + +E  M+ + +MK S VEP+  SY IL +A  ++    +AE +  AL  
Sbjct: 145 KGLCWENKSANRLEQAMEFFKEMKASGVEPDLESYHILLSA--LSDSGRMAEAH--ALFS 200

Query: 229 SMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRA 288
           +MT +                               P++ +  Y + ++ + +I Q   A
Sbjct: 201 AMTCS-------------------------------PDIMT--YNVLMDGYCKIGQTYEA 227

Query: 289 EELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALG 348
           + L  E+           Y+ +I+ YCK   +++A  +  +M  + C PNA+T+  L  G
Sbjct: 228 QSLMKEILKAGYEPNVFTYSIIINCYCKLDKVEEAWEVFMKMIESNCVPNAVTFNTLIAG 287

Query: 349 CFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELK 408
             K+ ++E+  K           +K+      +     I  +  ++G V  A +LF +L+
Sbjct: 288 FCKAGMLEDAIKLFA------EMEKIGCKATIVTYNTLIDSLCKKRGGVYTAVDLFNKLE 341

Query: 409 KANYTKYTFVYNTLIKAYVKA-KINDPNLLRRMILGGARPDAETYSLL 455
            A  T     YN+LI+ +  A ++++       + G   P+  TYS+L
Sbjct: 342 GAGLTPTIVTYNSLIQGFCDARRLSEAMQYFDEMEGKCAPNVITYSIL 389



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 79/350 (22%), Positives = 144/350 (41%), Gaps = 59/350 (16%)

Query: 152 ILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPN------------ 199
           + +++ A   AP+  T+++L++       +   + V+SDMK S + PN            
Sbjct: 19  LFKEVLAGLFAPNAHTYNVLIRGFCKGGQMHQAVSVFSDMKSSGLLPNASTMNTLLLGLC 78

Query: 200 -----------------------EVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWS 236
                                    S+ IL     +A     A  +++ + KS +     
Sbjct: 79  EIGQMSSALKLFREMQAGPFLPTSASHNILLRGFFMAGRVRDALAHLQDMRKSSSSVATG 138

Query: 237 TLDVLIILYGYLAKGKDLERIWATVQELPNVRS-------KSYVLAIEAFGRIAQVSRAE 289
           T +  ++L G   + K   R+   ++    +++       +SY + + A     +++ A 
Sbjct: 139 TYN--LVLKGLCWENKSANRLEQAMEFFKEMKASGVEPDLESYHILLSALSDSGRMAEAH 196

Query: 290 ELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGC 349
            L+  M     +     YN ++  YCK G   +A  L+KE+   G +PN  TY  + + C
Sbjct: 197 ALFSAMTCSPDIMT---YNVLMDGYCKIGQTYEAQSLMKEILKAGYEPNVFTYS-IIINC 252

Query: 350 F-KSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELK 408
           + K + VEE   A E+ MK+I +  V    P   T  ++I  F + G + +A  LF E++
Sbjct: 253 YCKLDKVEE---AWEVFMKMIESNCV----PNAVTFNTLIAGFCKAGMLEDAIKLFAEME 305

Query: 409 KANYTKYTFVYNTLIKAYVKAK---INDPNLLRRMILGGARPDAETYSLL 455
           K         YNTLI +  K +       +L  ++   G  P   TY+ L
Sbjct: 306 KIGCKATIVTYNTLIDSLCKKRGGVYTAVDLFNKLEGAGLTPTIVTYNSL 355



 Score = 55.5 bits (132), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 57/281 (20%), Positives = 115/281 (40%), Gaps = 25/281 (8%)

Query: 152 ILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHA 211
           +  +M      P+  TF+ L+        +E  +K++++M++   +   V+Y  L  +  
Sbjct: 265 VFMKMIESNCVPNAVTFNTLIAGFCKAGMLEDAIKLFAEMEKIGCKATIVTYNTLIDSLC 324

Query: 212 VAR--LYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKG-KDLERIWATVQELPNVR 268
             R  +YT  + +   LE        + L   I+ Y  L +G  D  R+   +Q    + 
Sbjct: 325 KKRGGVYTAVDLF-NKLE-------GAGLTPTIVTYNSLIQGFCDARRLSEAMQYFDEME 376

Query: 269 SK------SYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDK 322
            K      +Y + I+   ++ ++  A +   +M++         Y  +I+ +CK G +  
Sbjct: 377 GKCAPNVITYSILIDGLCKVRRMKEAAKTLEDMKAHGYTPTVVTYGGLINGFCKCGELKS 436

Query: 323 ASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLE 382
           A    ++M + GC PN + +  L  G  K+    +       G++L+         P + 
Sbjct: 437 ALLFFEKMKLAGCAPNTVIFNTLIDGLCKAERAND-------GLRLLCHMHAEGCKPDVI 489

Query: 383 TTLSIIEIFAEKGDVGNAENLFEELKKA-NYTKYTFVYNTL 422
           T   +I        V +A+ LF+ +  A N T + F+   L
Sbjct: 490 TYNCLISGLCSANRVEDAQRLFDGMACAPNVTTFNFLIRGL 530


>gi|449455399|ref|XP_004145440.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g35130-like [Cucumis sativus]
          Length = 576

 Score = 85.5 bits (210), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 93/435 (21%), Positives = 177/435 (40%), Gaps = 33/435 (7%)

Query: 38  KLQLNKR---ALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQGEKLFC------CI 88
           +L+LNK+    + + EW++ +  +RP  + Y+ L++   +       E  +       CI
Sbjct: 128 QLRLNKKWGPIILICEWIMNKSTFRPDVIVYNLLMDAYGQRSLYKDVESTYLELLESHCI 187

Query: 89  PKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKT 148
           P     E  Y  L+ A    G+++ +     +MR  G S S +V+N  I      G    
Sbjct: 188 P----TEDTYALLLKAYCKSGLLEKAEAVFAEMRKYGLSPSAIVYNAYIDGLVKGGNNVK 243

Query: 149 IPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILAT 208
              I  +MK D   P   T+ +L+ +   +        ++ +M+    +PN  ++  L  
Sbjct: 244 AVEIFHRMKRDGCQPTTDTYTMLINVYGKESKSHMAQNIFDEMRTQRCKPNICTFTALVN 303

Query: 209 AHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVR 268
           A A   L   AE   E ++++    +    + L+  Y           I++ +Q +    
Sbjct: 304 ALAREGLCEKAEEIFEQMQEAGYEPDVYAYNALMESYSRAGFPYGAAEIFSLMQHMGCEP 363

Query: 269 SK-SYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLL 327
            + SY + ++A+GR      A+ ++ EM+ +      + +  ++S Y   G + K   ++
Sbjct: 364 DRASYNIMVDAYGRAGLHEDAQAVFEEMKRIGITPTMKSHMLLLSAYSSAGNVAKCEDII 423

Query: 328 KEMSMNGCKPNAITYRHL-----ALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLE 382
            +M  +G KP+      +      LG F    +E+ F  ++ G         R+    + 
Sbjct: 424 GQMHKSGLKPDTFVMNSMLNLYGRLGQFGK--MEDLFSTMQKG-------PCRAD---IS 471

Query: 383 TTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKINDP--NLLRRM 440
           T   +I ++   G V   E LF+ L   N       + + I AY + K+      L  +M
Sbjct: 472 TYNILINVYGRAGFVERMEELFQLLPAKNLEPDVVTWTSRIGAYSRKKLYKRCLELFEKM 531

Query: 441 ILGGARPDAETYSLL 455
           I  G  PD  T  +L
Sbjct: 532 IDAGCYPDGGTAKVL 546



 Score = 68.9 bits (167), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 72/332 (21%), Positives = 138/332 (41%), Gaps = 12/332 (3%)

Query: 33  INRLRKLQLNKRALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQGEKLFC------ 86
           I+ L K   N +A+E+   + R+   +P    Y+ L+    K       + +F       
Sbjct: 232 IDGLVKGGNNVKAVEIFHRMKRD-GCQPTTDTYTMLINVYGKESKSHMAQNIFDEMRTQR 290

Query: 87  CIPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRR 146
           C P    N   +  LV A   +G+ + + E  ++M+  G+      +N L+   S  G  
Sbjct: 291 CKP----NICTFTALVNALAREGLCEKAEEIFEQMQEAGYEPDVYAYNALMESYSRAGFP 346

Query: 147 KTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCIL 206
                I   M+     P  ++++I++         E    V+ +MKR  + P   S+ +L
Sbjct: 347 YGAAEIFSLMQHMGCEPDRASYNIMVDAYGRAGLHEDAQAVFEEMKRIGITPTMKSHMLL 406

Query: 207 ATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELP- 265
            +A++ A      E  +  + KS    +   ++ ++ LYG L +   +E +++T+Q+ P 
Sbjct: 407 LSAYSSAGNVAKCEDIIGQMHKSGLKPDTFVMNSMLNLYGRLGQFGKMEDLFSTMQKGPC 466

Query: 266 NVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASG 325
                +Y + I  +GR   V R EEL+  + +         + S I  Y +     +   
Sbjct: 467 RADISTYNILINVYGRAGFVERMEELFQLLPAKNLEPDVVTWTSRIGAYSRKKLYKRCLE 526

Query: 326 LLKEMSMNGCKPNAITYRHLALGCFKSNLVEE 357
           L ++M   GC P+  T + L   C     +E+
Sbjct: 527 LFEKMIDAGCYPDGGTAKVLLSACSSEEQIEQ 558


>gi|125559056|gb|EAZ04592.1| hypothetical protein OsI_26742 [Oryza sativa Indica Group]
          Length = 402

 Score = 85.5 bits (210), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 79/349 (22%), Positives = 156/349 (44%), Gaps = 15/349 (4%)

Query: 58  YRPKELDYSYLLEFTIKNHGISQGEKLFCCIPKDYQNELLYNNLVIACLDKGVIKLSLEY 117
           + PK  D++  L+   + HG S  E  F  +P   + E  Y  L+     + +++ SL +
Sbjct: 9   FLPK--DHAVHLDLIGEIHGSSAAETYFNNLPDKDKTEKPYGALLNCYTRELLVEKSLAH 66

Query: 118 MKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEAN 177
            +KM+ LG   S L +N ++ L ++ G+ + +P+++ +MK++ + P   ++ I +     
Sbjct: 67  FQKMKELGFVFSTLPYNNIMGLYTNLGQHEKVPSVIAEMKSNGIVPDNFSYRICINSYGT 126

Query: 178 DHNIEGLMKVYSDMKRSEVEPNEV----SYCILATAHAVARLYTVAETYVEALEKSMTGN 233
             +  G+     +M   E EP  V    +Y ++A+ +    +   A + ++  E  +   
Sbjct: 127 RADFFGMENTLEEM---ECEPKIVVDWNTYAVVASNYIKGNIREKAFSALKKAEAKINIK 183

Query: 234 NWSTLDVLIILYGYLAKGKDLERIWATVQELPNVR-SKSYVLAIEAFGRIAQVSRAEELW 292
           +  + + LI LYG+L    ++ R+WA      N   +K Y   +    ++ ++  AE L 
Sbjct: 184 DSDSYNHLISLYGHLGDKSEVNRLWALQMSNCNRHINKDYTTMLAVLVKLNEIEEAEVLL 243

Query: 293 LEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKS 352
            E +S       +  N +++ Y +   +DKA  LL +    G  P + ++  +A G  + 
Sbjct: 244 KEWESSGNAFDFQVPNVLLTGYRQKDLLDKAEALLDDFLKKGKMPPSTSWAIVAAGYAEK 303

Query: 353 NLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAE 401
               +  KA EL    +       +T W+     I  I    GD G+ E
Sbjct: 304 G---DAAKAYELTKNALCV--YAPNTGWIPRPGMIEMILKYLGDEGDVE 347


>gi|15225055|ref|NP_181456.1| lateral organ junction protein [Arabidopsis thaliana]
 gi|75100007|sp|O80958.1|PP194_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At2g39230, mitochondrial; AltName: Full=Protein LATERAL
           ORGAN JUNCTION; Flags: Precursor
 gi|3402682|gb|AAC28985.1| unknown protein [Arabidopsis thaliana]
 gi|330254554|gb|AEC09648.1| lateral organ junction protein [Arabidopsis thaliana]
          Length = 867

 Score = 85.5 bits (210), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 74/273 (27%), Positives = 125/273 (45%), Gaps = 19/273 (6%)

Query: 191 MKRSEVEPNEVSYCILATAHAVARLYTVAET-YVEALEKSMTGNNWSTLDVLIILYGYLA 249
           M++  +EPN V Y  +  AH   +   +A + + E LEK +  NN++     I++ G+  
Sbjct: 475 MEQKGIEPNVVFYNNMMLAHCRMKNMDLARSIFSEMLEKGLEPNNFT---YSILIDGFF- 530

Query: 250 KGKDLERIWATVQEL--PNVRSKS--YVLAIEAFGRIAQVSRAEELWLEMQSVKQLK-AT 304
           K KD +  W  + ++   N  +    Y   I    ++ Q S+A+E+   +   K+   + 
Sbjct: 531 KNKDEQNAWDVINQMNASNFEANEVIYNTIINGLCKVGQTSKAKEMLQNLIKEKRYSMSC 590

Query: 305 EQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALEL 364
             YNS+I  + K G  D A    +EMS NG  PN +T+  L  G  KSN        ++L
Sbjct: 591 TSYNSIIDGFVKVGDTDSAVETYREMSENGKSPNVVTFTSLINGFCKSN-------RMDL 643

Query: 365 GMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIK 424
            +++    K       L    ++I+ F +K D+  A  LF EL +        VYN+LI 
Sbjct: 644 ALEMTHEMKSMELKLDLPAYGALIDGFCKKNDMKTAYTLFSELPELGLMPNVSVYNSLIS 703

Query: 425 AYVKAKINDP--NLLRRMILGGARPDAETYSLL 455
            +      D   +L ++M+  G   D  TY+ +
Sbjct: 704 GFRNLGKMDAAIDLYKKMVNDGISCDLFTYTTM 736



 Score = 48.5 bits (114), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 29/121 (23%), Positives = 55/121 (45%), Gaps = 7/121 (5%)

Query: 308 NSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMK 367
           N +  ++CK G +D A+  LK M   G +PN + Y ++ L   +        K ++L   
Sbjct: 453 NKIFLLFCKQGKVDAATSFLKMMEQKGIEPNVVFYNNMMLAHCR-------MKNMDLARS 505

Query: 368 LITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYV 427
           + +    +   P   T   +I+ F +  D  NA ++  ++  +N+     +YNT+I    
Sbjct: 506 IFSEMLEKGLEPNNFTYSILIDGFFKNKDEQNAWDVINQMNASNFEANEVIYNTIINGLC 565

Query: 428 K 428
           K
Sbjct: 566 K 566



 Score = 45.4 bits (106), Expect = 0.056,   Method: Compositional matrix adjust.
 Identities = 71/370 (19%), Positives = 144/370 (38%), Gaps = 48/370 (12%)

Query: 96  LLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQ 155
            + N + +    +G +  +  ++K M   G   + + +N +++ +          +I  +
Sbjct: 450 FMCNKIFLLFCKQGKVDAATSFLKMMEQKGIEPNVVFYNNMMLAHCRMKNMDLARSIFSE 509

Query: 156 MKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARL 215
           M    + P+  T+ IL+     + + +    V + M  S  E NEV Y  +         
Sbjct: 510 MLEKGLEPNNFTYSILIDGFFKNKDEQNAWDVINQMNASNFEANEVIYNTIINGLCKVGQ 569

Query: 216 YTVAETYVEALEK----SMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQEL------P 265
            + A+  ++ L K    SM+  ++++     I+ G++  G D +    T +E+      P
Sbjct: 570 TSKAKEMLQNLIKEKRYSMSCTSYNS-----IIDGFVKVG-DTDSAVETYREMSENGKSP 623

Query: 266 NVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASG 325
           NV   ++   I  F +  ++  A E+  EM+S++       Y ++I  +CK   +  A  
Sbjct: 624 NV--VTFTSLINGFCKSNRMDLALEMTHEMKSMELKLDLPAYGALIDGFCKKNDMKTAYT 681

Query: 326 LLKEMSMNGCKPNAITYRHLALGCFKS------------NLVEEGFKA------------ 361
           L  E+   G  PN   Y  L  G F++             +V +G               
Sbjct: 682 LFSELPELGLMPNVSVYNSLISG-FRNLGKMDAAIDLYKKMVNDGISCDLFTYTTMIDGL 740

Query: 362 -----LELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYT 416
                + L   L +        P     + ++   ++KG    A  + EE+KK + T   
Sbjct: 741 LKDGNINLASDLYSELLDLGIVPDEILHMVLVNGLSKKGQFLKASKMLEEMKKKDVTPNV 800

Query: 417 FVYNTLIKAY 426
            +Y+T+I  +
Sbjct: 801 LLYSTVIAGH 810



 Score = 38.5 bits (88), Expect = 6.9,   Method: Compositional matrix adjust.
 Identities = 59/310 (19%), Positives = 125/310 (40%), Gaps = 4/310 (1%)

Query: 55  ERPYRPKELDYSYLLEFTIKNHGISQGEKLFCCI-PKDYQ-NELLYNNLVIACLDKGVIK 112
           E+   P    YS L++   KN        +   +   +++ NE++YN ++      G   
Sbjct: 512 EKGLEPNNFTYSILIDGFFKNKDEQNAWDVINQMNASNFEANEVIYNTIINGLCKVGQTS 571

Query: 113 LSLEYMKKM-RVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHIL 171
            + E ++ + +   +S+S   +N +I      G   +     R+M  +  +P+V TF  L
Sbjct: 572 KAKEMLQNLIKEKRYSMSCTSYNSIIDGFVKVGDTDSAVETYREMSENGKSPNVVTFTSL 631

Query: 172 MKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMT 231
           +      + ++  +++  +MK  E++ +  +Y  L            A T    L +   
Sbjct: 632 INGFCKSNRMDLALEMTHEMKSMELKLDLPAYGALIDGFCKKNDMKTAYTLFSELPELGL 691

Query: 232 GNNWSTLDVLIILYGYLAK-GKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEE 290
             N S  + LI  +  L K    ++     V +  +    +Y   I+   +   ++ A +
Sbjct: 692 MPNVSVYNSLISGFRNLGKMDAAIDLYKKMVNDGISCDLFTYTTMIDGLLKDGNINLASD 751

Query: 291 LWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCF 350
           L+ E+  +  +     +  +++   K G   KAS +L+EM      PN + Y  +  G  
Sbjct: 752 LYSELLDLGIVPDEILHMVLVNGLSKKGQFLKASKMLEEMKKKDVTPNVLLYSTVIAGHH 811

Query: 351 KSNLVEEGFK 360
           +   + E F+
Sbjct: 812 REGNLNEAFR 821


>gi|334187332|ref|NP_001190970.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332661695|gb|AEE87095.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 510

 Score = 85.1 bits (209), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 84/371 (22%), Positives = 162/371 (43%), Gaps = 23/371 (6%)

Query: 44  RALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQGEKLFC------CIPKDYQNELL 97
           + LEV  W+ ++R Y P    YS L+    K         LF       C P    +  +
Sbjct: 115 QCLEVFRWMQKQRWYIPDNGVYSKLISVMGKKGQTRMAMWLFSEMKNSGCRP----DASV 170

Query: 98  YNNLVIACLDKGVIKLSLE----YMKKMRVLGHSISYLV-FNRLIILNSSPGRRKTIPNI 152
           YN L+ A L       +LE    Y+ KM+ +      +V +N L+   +  G+   +  +
Sbjct: 171 YNALITAHLHTRDKAKALEKVRGYLDKMKGIERCQPNVVTYNILLRAFAQSGKVDQVNAL 230

Query: 153 LRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAV 212
            + +    V+P V TF+ +M     +  I+ +  V + M+ +E +P+ +++ +L  ++  
Sbjct: 231 FKDLDMSPVSPDVYTFNGVMDAYGKNGMIKEMEAVLTRMRSNECKPDIITFNVLIDSYGK 290

Query: 213 ARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRS-KS 271
            + +   E   ++L +S       T + +II YG        E ++  + ++  + S  +
Sbjct: 291 KQEFEKMEQTFKSLMRSKEKPTLPTFNSMIINYGKARMIDKAEWVFKKMNDMNYIPSFIT 350

Query: 272 YVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMS 331
           Y   I  +G    VSRA E++ E+    ++      N+++ VYC+NG   +A  L    S
Sbjct: 351 YECMIMMYGYCGSVSRAREIFEEVGESDRVLKASTLNAMLEVYCRNGLYIEADKLFHNAS 410

Query: 332 MNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIF 391
                P+A TY+ L     K+++ E+    +++ MK +    +    P     L  +E+F
Sbjct: 411 AFRVHPDASTYKFLYKAYTKADMKEQ----VQILMKKMEKDGI---VPNKRFFLEALEVF 463

Query: 392 AEKGDVGNAEN 402
             +     +EN
Sbjct: 464 GSRLPGSGSEN 474



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 69/327 (21%), Positives = 141/327 (43%), Gaps = 19/327 (5%)

Query: 132 VFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHN----IEGLMKV 187
           V+++LI +    G+ +    +  +MK     P  S ++ L+    +  +    +E +   
Sbjct: 135 VYSKLISVMGKKGQTRMAMWLFSEMKNSGCRPDASVYNALITAHLHTRDKAKALEKVRGY 194

Query: 188 YSDMKRSE-VEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYG 246
              MK  E  +PN V+Y IL  A A +          + L+ S    +  T + ++  YG
Sbjct: 195 LDKMKGIERCQPNVVTYNILLRAFAQSGKVDQVNALFKDLDMSPVSPDVYTFNGVMDAYG 254

Query: 247 YLAKGKDLERIWATVQE---LPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKA 303
                K++E +   ++     P++   ++ + I+++G+  +  + E+ +  +   K+   
Sbjct: 255 KNGMIKEMEAVLTRMRSNECKPDI--ITFNVLIDSYGKKQEFEKMEQTFKSLMRSKEKPT 312

Query: 304 TEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALE 363
              +NS+I  Y K   IDKA  + K+M+     P+ ITY  + +       V    +A E
Sbjct: 313 LPTFNSMIINYGKARMIDKAEWVFKKMNDMNYIPSFITYECMIMMYGYCGSVS---RARE 369

Query: 364 LGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLI 423
           +  ++  + +V  ++    T  +++E++   G    A+ LF              Y  L 
Sbjct: 370 IFEEVGESDRVLKAS----TLNAMLEVYCRNGLYIEADKLFHNASAFRVHPDASTYKFLY 425

Query: 424 KAYVKAKINDPN--LLRRMILGGARPD 448
           KAY KA + +    L+++M   G  P+
Sbjct: 426 KAYTKADMKEQVQILMKKMEKDGIVPN 452



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 50/193 (25%), Positives = 84/193 (43%), Gaps = 7/193 (3%)

Query: 267 VRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVK-QLKATEQYNSVISVYCKNGFIDKASG 325
           VR     L  E  G+  +  +  E++  MQ  +  +     Y+ +ISV  K G    A  
Sbjct: 95  VRCDHCFLLFEELGKSDKWLQCLEVFRWMQKQRWYIPDNGVYSKLISVMGKKGQTRMAMW 154

Query: 326 LLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALE-LGMKLITTKKVRSSTPWLETT 384
           L  EM  +GC+P+A  Y  L      +    +  KALE +   L   K +    P + T 
Sbjct: 155 LFSEMKNSGCRPDASVYNALITAHLHT---RDKAKALEKVRGYLDKMKGIERCQPNVVTY 211

Query: 385 LSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKI--NDPNLLRRMIL 442
             ++  FA+ G V     LF++L  +  +   + +N ++ AY K  +      +L RM  
Sbjct: 212 NILLRAFAQSGKVDQVNALFKDLDMSPVSPDVYTFNGVMDAYGKNGMIKEMEAVLTRMRS 271

Query: 443 GGARPDAETYSLL 455
              +PD  T+++L
Sbjct: 272 NECKPDIITFNVL 284


>gi|15218325|ref|NP_172461.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|122215618|sp|Q3EDF8.1|PPR28_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g09900
 gi|332190391|gb|AEE28512.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 598

 Score = 85.1 bits (209), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 82/370 (22%), Positives = 162/370 (43%), Gaps = 28/370 (7%)

Query: 98  YNNLVIACLDKGVIKLSLEYMKKM---RVLGHSISYLVFNRLIILNSSPGRRKTIPNILR 154
           YN ++ +  D G +K ++E + +M         I+Y +       +S  G       +L 
Sbjct: 207 YNTILRSLCDSGKLKQAMEVLDRMLQRDCYPDVITYTILIEATCRDSGVGHAM---KLLD 263

Query: 155 QMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVAR 214
           +M+     P V T+++L+     +  ++  +K  +DM  S  +PN +++ I+  +     
Sbjct: 264 EMRDRGCTPDVVTYNVLVNGICKEGRLDEAIKFLNDMPSSGCQPNVITHNIILRSMCSTG 323

Query: 215 LYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPN----VRSK 270
            +  AE  +  + +     +  T ++LI    +L +   L R    ++++P       S 
Sbjct: 324 RWMDAEKLLADMLRKGFSPSVVTFNILI---NFLCRKGLLGRAIDILEKMPQHGCQPNSL 380

Query: 271 SYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEM 330
           SY   +  F +  ++ RA E    M S         YN++++  CK+G ++ A  +L ++
Sbjct: 381 SYNPLLHGFCKEKKMDRAIEYLERMVSRGCYPDIVTYNTMLTALCKDGKVEDAVEILNQL 440

Query: 331 SMNGCKPNAITYRHLALGCFKSNLVEEGF-KALELG--MKLITTKKVRSSTPWLETTLSI 387
           S  GC P  ITY          N V +G  KA + G  +KL+   + +   P   T  S+
Sbjct: 441 SSKGCSPVLITY----------NTVIDGLAKAGKTGKAIKLLDEMRAKDLKPDTITYSSL 490

Query: 388 IEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKINDP--NLLRRMILGGA 445
           +   + +G V  A   F E ++         +N+++    K++  D   + L  MI  G 
Sbjct: 491 VGGLSREGKVDEAIKFFHEFERMGIRPNAVTFNSIMLGLCKSRQTDRAIDFLVFMINRGC 550

Query: 446 RPDAETYSLL 455
           +P+  +Y++L
Sbjct: 551 KPNETSYTIL 560



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 85/373 (22%), Positives = 162/373 (43%), Gaps = 27/373 (7%)

Query: 96  LLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQ 155
           + YN ++      G I  +L  + +M V   S   + +N ++      G+ K    +L +
Sbjct: 173 ITYNVMISGYCKAGEINNALSVLDRMSV---SPDVVTYNTILRSLCDSGKLKQAMEVLDR 229

Query: 156 MKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARL 215
           M      P V T+ IL++    D  +   MK+  +M+     P+ V+Y +L         
Sbjct: 230 MLQRDCYPDVITYTILIEATCRDSGVGHAMKLLDEMRDRGCTPDVVTYNVLVNGICKEGR 289

Query: 216 YTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGK--DLERIWATVQE---LPNVRSK 270
              A  ++  +  S    N  T +  IIL    + G+  D E++ A +      P+V   
Sbjct: 290 LDEAIKFLNDMPSSGCQPNVITHN--IILRSMCSTGRWMDAEKLLADMLRKGFSPSV--V 345

Query: 271 SYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEM 330
           ++ + I    R   + RA ++  +M        +  YN ++  +CK   +D+A   L+ M
Sbjct: 346 TFNILINFLCRKGLLGRAIDILEKMPQHGCQPNSLSYNPLLHGFCKEKKMDRAIEYLERM 405

Query: 331 SMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEI 390
              GC P+ +TY  +     K   VE+   A+E+  +L +    +  +P L T  ++I+ 
Sbjct: 406 VSRGCYPDIVTYNTMLTALCKDGKVED---AVEILNQLSS----KGCSPVLITYNTVIDG 458

Query: 391 FAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVK-AKINDP----NLLRRMILGGA 445
            A+ G  G A  L +E++  +    T  Y++L+    +  K+++     +   RM   G 
Sbjct: 459 LAKAGKTGKAIKLLDEMRAKDLKPDTITYSSLVGGLSREGKVDEAIKFFHEFERM---GI 515

Query: 446 RPDAETYSLLKLA 458
           RP+A T++ + L 
Sbjct: 516 RPNAVTFNSIMLG 528



 Score = 58.9 bits (141), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 82/364 (22%), Positives = 144/364 (39%), Gaps = 50/364 (13%)

Query: 43  KRALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQGEKLF------CCIPKDYQNEL 96
           K+A+EV++ +++   Y P  + Y+ L+E T ++ G+    KL        C P    + +
Sbjct: 221 KQAMEVLDRMLQRDCY-PDVITYTILIEATCRDSGVGHAMKLLDEMRDRGCTP----DVV 275

Query: 97  LYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQM 156
            YN LV     +G +  +++++  M   G   + +  N ++    S GR      +L  M
Sbjct: 276 TYNVLVNGICKEGRLDEAIKFLNDMPSSGCQPNVITHNIILRSMCSTGRWMDAEKLLADM 335

Query: 157 KADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLY 216
                +P V TF+IL+        +   + +   M +   +PN +SY  L       +  
Sbjct: 336 LRKGFSPSVVTFNILINFLCRKGLLGRAIDILEKMPQHGCQPNSLSYNPLLHGFCKEKKM 395

Query: 217 TVAETYVEALEKS------MTGNNWSTL--------DVLIILYGYLAKG----------- 251
             A  Y+E +         +T N   T         D + IL    +KG           
Sbjct: 396 DRAIEYLERMVSRGCYPDIVTYNTMLTALCKDGKVEDAVEILNQLSSKGCSPVLITYNTV 455

Query: 252 -KDLERIWAT---VQELPNVRSK-------SYVLAIEAFGRIAQVSRAEELWLEMQSVKQ 300
              L +   T   ++ L  +R+K       +Y   +    R  +V  A + + E + +  
Sbjct: 456 IDGLAKAGKTGKAIKLLDEMRAKDLKPDTITYSSLVGGLSREGKVDEAIKFFHEFERMGI 515

Query: 301 LKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFK 360
                 +NS++   CK+   D+A   L  M   GCKPN  +Y  L  G     + +E   
Sbjct: 516 RPNAVTFNSIMLGLCKSRQTDRAIDFLVFMINRGCKPNETSYTILIEGLAYEGMAKE--- 572

Query: 361 ALEL 364
           ALEL
Sbjct: 573 ALEL 576



 Score = 55.5 bits (132), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 44/182 (24%), Positives = 83/182 (45%), Gaps = 12/182 (6%)

Query: 276 IEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGC 335
           I  F R+ +  +A ++   ++    +     YN +IS YCK G I+ A  +L  MS++  
Sbjct: 144 IRGFCRLGKTRKAAKILEILEGSGAVPDVITYNVMISGYCKAGEINNALSVLDRMSVS-- 201

Query: 336 KPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKG 395
            P+ +TY  +       +L + G   L+  M+++     R   P + T   +IE      
Sbjct: 202 -PDVVTYNTIL-----RSLCDSG--KLKQAMEVLDRMLQRDCYPDVITYTILIEATCRDS 253

Query: 396 DVGNAENLFEELKKANYTKYTFVYNTLIKAYVK-AKINDP-NLLRRMILGGARPDAETYS 453
            VG+A  L +E++    T     YN L+    K  ++++    L  M   G +P+  T++
Sbjct: 254 GVGHAMKLLDEMRDRGCTPDVVTYNVLVNGICKEGRLDEAIKFLNDMPSSGCQPNVITHN 313

Query: 454 LL 455
           ++
Sbjct: 314 II 315


>gi|125557843|gb|EAZ03379.1| hypothetical protein OsI_25524 [Oryza sativa Indica Group]
          Length = 716

 Score = 85.1 bits (209), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 73/340 (21%), Positives = 155/340 (45%), Gaps = 15/340 (4%)

Query: 114 SLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMK 173
           +LE +++M+ +G+ +   +F  L+   +  G+      ++ ++K   + P +  +++ + 
Sbjct: 64  ALELLRQMQEVGYEVGVHLFTTLVRALAREGQVADALALVDEVKGSCLEPDIVLYNVCID 123

Query: 174 IEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGN 233
                 N++   K + ++K   ++P++VSY  +      A     AE     +E   +  
Sbjct: 124 CFGKAGNVDMACKFFHELKAQGLKPDDVSYTSMIWVLCKAGRLGEAEELFAQMEAERSVP 183

Query: 234 NWSTLDVLIILYGYLAKGKDLERIWATVQE---LPNVRSKSYVLAIEAFGRIAQVSRAEE 290
                + +I+ YG   + +D  ++   ++E   +P+V S + +L     G+  +V  A  
Sbjct: 184 CAYAYNTMIMGYGSAGRFEDAYKLLERLRERGCIPSVVSFNSILT--CLGKKRKVDEALS 241

Query: 291 LWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCF 350
           L+  M+   +  ++  YN +I + C  G +++A  +L EM      PN +T   +     
Sbjct: 242 LFEVMKKDAEPNSS-TYNIIIDMLCLGGRVEEAYRILDEMEHASLFPNLLTVNIMVDRLC 300

Query: 351 KSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKA 410
           K+  +EE +K  E       +   R   P   T  S+I+   +KG V  A  LFE++  A
Sbjct: 301 KARKLEEAYKIFE-------SASQRGCNPDCVTYCSLIDGLGKKGQVDEAYRLFEKMLDA 353

Query: 411 NYTKYTFVYNTLIKA-YVKAKINDPN-LLRRMILGGARPD 448
            +     VY +LI+  ++  +  D + + + +I  G +PD
Sbjct: 354 GHNANPVVYTSLIRNFFIHGRKEDGHKVFKELIRRGCKPD 393



 Score = 63.9 bits (154), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 101/488 (20%), Positives = 192/488 (39%), Gaps = 103/488 (21%)

Query: 53  IRERPYRPKELDYSYLLEFTIKNHGISQGEKLFC------CIPKDYQNELLYNNLVIACL 106
           ++ +  +P ++ Y+ ++    K   + + E+LF        +P  Y     YN +++   
Sbjct: 141 LKAQGLKPDDVSYTSMIWVLCKAGRLGEAEELFAQMEAERSVPCAYA----YNTMIMGYG 196

Query: 107 DKGVIKLSLEYMKKMRVLGHSISYLVFNRLIIL-----------------------NSSP 143
             G  + + + ++++R  G   S + FN ++                         NSS 
Sbjct: 197 SAGRFEDAYKLLERLRERGCIPSVVSFNSILTCLGKKRKVDEALSLFEVMKKDAEPNSST 256

Query: 144 -----------GRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMK 192
                      GR +    IL +M+   + P++ T +I++        +E   K++    
Sbjct: 257 YNIIIDMLCLGGRVEEAYRILDEMEHASLFPNLLTVNIMVDRLCKARKLEEAYKIFESAS 316

Query: 193 RSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSM-TGNN-----WSTLDVLIILYG 246
           +    P+ V+YC L     + +   V E Y    EK +  G+N     +++L     ++G
Sbjct: 317 QRGCNPDCVTYCSLI--DGLGKKGQVDEAY-RLFEKMLDAGHNANPVVYTSLIRNFFIHG 373

Query: 247 YLAKG----KDLER----------------------------IWATVQE---LPNVRSKS 271
               G    K+L R                            I+  ++    LP+VRS  
Sbjct: 374 RKEDGHKVFKELIRRGCKPDLTLLNTYMDCVFKAGEVEKGRMIFEDIRSYGFLPDVRS-- 431

Query: 272 YVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMS 331
           Y + I    +  Q      ++  M+          YN+V+  +CK+G + KA  +L+EM 
Sbjct: 432 YSILIHGLTKAGQARETSNIFHAMKQQGFALDARAYNAVVDGFCKSGKVHKAYEILEEMK 491

Query: 332 MNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTL--SIIE 389
               +P   TY  +  G  K + ++E +   E         + +S    L   L  S+I+
Sbjct: 492 EKCVQPTVATYGAIVDGLAKIDRLDEAYMLFE---------EAKSKGIELNVVLYSSLID 542

Query: 390 IFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKA-KINDPNL-LRRMILGGARP 447
            F + G +  A  + EE+ K   T   + +N+L+ A VKA +IN+  +  + M      P
Sbjct: 543 GFGKVGRIDEAYLILEEMMKKGLTPNVYTWNSLLDALVKAEEINEALVCFQSMKEMKCPP 602

Query: 448 DAETYSLL 455
           +  TYS+L
Sbjct: 603 NTYTYSIL 610



 Score = 55.5 bits (132), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 55/250 (22%), Positives = 105/250 (42%), Gaps = 19/250 (7%)

Query: 121 MRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHN 180
           M+  G ++    +N ++      G+      IL +MK   V P V+T+  ++   A    
Sbjct: 455 MKQQGFALDARAYNAVVDGFCKSGKVHKAYEILEEMKEKCVQPTVATYGAIVDGLAKIDR 514

Query: 181 IEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYV---EALEKSMTGN--NW 235
           ++    ++ + K   +E N V Y  L       ++  + E Y+   E ++K +T N   W
Sbjct: 515 LDEAYMLFEEAKSKGIELNVVLYSSLI--DGFGKVGRIDEAYLILEEMMKKGLTPNVYTW 572

Query: 236 -STLDVLIILYGYLAKGKDLERIWATVQELPNVR----SKSYVLAIEAFGRIAQVSRAEE 290
            S LD L+       K +++       Q +  ++    + +Y + I    R+ + ++A  
Sbjct: 573 NSLLDALV-------KAEEINEALVCFQSMKEMKCPPNTYTYSILINGLCRVQKYNKAFV 625

Query: 291 LWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCF 350
            W +MQ    +     Y ++IS   K G I  A  L +    NG  P+A ++  L  G  
Sbjct: 626 FWQDMQKQGLVPNVVTYTTMISGLAKVGNITDAYSLFERFKANGGIPDAASFNALIEGMS 685

Query: 351 KSNLVEEGFK 360
            +N   E ++
Sbjct: 686 NANRAMEAYQ 695



 Score = 52.0 bits (123), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 72/352 (20%), Positives = 135/352 (38%), Gaps = 49/352 (13%)

Query: 106 LDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHV 165
           LD  V+ +++     MR L    ++  +  LI   +   R +    +LRQM+       V
Sbjct: 26  LDDAVLAVAV-----MRRLKFRPAFSAYTVLIGALAEARRPERALELLRQMQEVGYEVGV 80

Query: 166 STFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEA 225
             F  L++  A +  +   + +  ++K S +EP+ V Y +       A    +A  +   
Sbjct: 81  HLFTTLVRALAREGQVADALALVDEVKGSCLEPDIVLYNVCIDCFGKAGNVDMACKFFHE 140

Query: 226 LEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQV 285
           L+                     A+G   + +             SY   I    +  ++
Sbjct: 141 LK---------------------AQGLKPDDV-------------SYTSMIWVLCKAGRL 166

Query: 286 SRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHL 345
             AEEL+ +M++ + +     YN++I  Y   G  + A  LL+ +   GC P+ +++  +
Sbjct: 167 GEAEELFAQMEAERSVPCAYAYNTMIMGYGSAGRFEDAYKLLERLRERGCIPSVVSFNSI 226

Query: 346 ALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFE 405
                K   V+E     E+ MK       + + P   T   II++    G V  A  + +
Sbjct: 227 LTCLGKKRKVDEALSLFEV-MK-------KDAEPNSSTYNIIIDMLCLGGRVEEAYRILD 278

Query: 406 ELKKANYTKYTFVYNTLIKAYVKA-KINDP-NLLRRMILGGARPDAETYSLL 455
           E++ A+        N ++    KA K+ +   +       G  PD  TY  L
Sbjct: 279 EMEHASLFPNLLTVNIMVDRLCKARKLEEAYKIFESASQRGCNPDCVTYCSL 330



 Score = 40.4 bits (93), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 45/233 (19%), Positives = 97/233 (41%), Gaps = 19/233 (8%)

Query: 141 SSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNE 200
           +  G+ +   NI   MK    A     ++ ++        +    ++  +MK   V+P  
Sbjct: 440 TKAGQARETSNIFHAMKQQGFALDARAYNAVVDGFCKSGKVHKAYEILEEMKEKCVQPTV 499

Query: 201 VSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKG----KDLER 256
            +Y   A    +A++  + E Y+   E    G     +++ ++LY  L  G      ++ 
Sbjct: 500 ATYG--AIVDGLAKIDRLDEAYMLFEEAKSKG-----IELNVVLYSSLIDGFGKVGRIDE 552

Query: 257 IWATVQEL------PNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSV 310
            +  ++E+      PNV + + +L  +A  +  +++ A   +  M+ +K    T  Y+ +
Sbjct: 553 AYLILEEMMKKGLTPNVYTWNSLL--DALVKAEEINEALVCFQSMKEMKCPPNTYTYSIL 610

Query: 311 ISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALE 363
           I+  C+    +KA    ++M   G  PN +TY  +  G  K   + + +   E
Sbjct: 611 INGLCRVQKYNKAFVFWQDMQKQGLVPNVVTYTTMISGLAKVGNITDAYSLFE 663


>gi|297605196|ref|NP_001056837.2| Os06g0152500 [Oryza sativa Japonica Group]
 gi|255676726|dbj|BAF18751.2| Os06g0152500 [Oryza sativa Japonica Group]
          Length = 717

 Score = 85.1 bits (209), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 89/370 (24%), Positives = 160/370 (43%), Gaps = 19/370 (5%)

Query: 94  NELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNIL 153
           N   YN LV A   +G ++ ++  +  MR  G + + + +N L+      G       ++
Sbjct: 151 NVYTYNILVRALCARGRLEEAVGVVGDMRGAGCAPNAVTYNTLVAAFCRAGELDGAERVV 210

Query: 154 RQMKADKVA-PHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHA- 211
             M+ +  A P++ TF+ ++        +EG  KV+ +M R  + P+ VSY  L + +  
Sbjct: 211 SLMREEGNAKPNLVTFNSMVNGLCKAGRMEGARKVFDEMVREGLAPDVVSYNTLLSGYCK 270

Query: 212 VARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPN----V 267
           V  L+     + E  ++ +  +    +     L     K  +LE+  A V ++      +
Sbjct: 271 VGCLHESLAVFSEMTQRGLVPD----VVTFTSLIHATCKAGNLEQAVALVAQMRERGLRM 326

Query: 268 RSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLL 327
              ++   I+ F +   +  A     EM+      +   YN++I+ YCK G +D A  L+
Sbjct: 327 NEVTFTALIDGFCKKGFLDDALLAVEEMRKCGIQPSVVCYNALINGYCKLGRMDLARELI 386

Query: 328 KEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSI 387
           +EM     KP+ +TY  +  G  K   ++  F   +L  K++     +   P   T  S+
Sbjct: 387 REMEAKRVKPDVVTYSTIISGYCKVGNLDSAF---QLNQKMLK----KGVLPDAITYSSL 439

Query: 388 IEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKINDP--NLLRRMILGGA 445
           I    E+  + +A  LFE + +       F Y TLI  + K    +   +L   MI  G 
Sbjct: 440 IRGLCEEKRLNDACELFENMLQLGVQPDEFTYTTLIDGHCKEGNVEKALSLHDEMIRKGV 499

Query: 446 RPDAETYSLL 455
            PD  TYS+L
Sbjct: 500 LPDVVTYSVL 509



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 81/342 (23%), Positives = 143/342 (41%), Gaps = 26/342 (7%)

Query: 125 GHSISYLVFNRLIILNSS---PGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNI 181
           G++ S   +N +++  S    P  R+ + ++LR      VAP+V T++IL++       +
Sbjct: 113 GYAPSVPAYNAVLLALSDASLPSARRFLSSMLRH----GVAPNVYTYNILVRALCARGRL 168

Query: 182 EGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVL 241
           E  + V  DM+ +   PN V+Y  L  A   A     AE  V  + +   GN    L   
Sbjct: 169 EEAVGVVGDMRGAGCAPNAVTYNTLVAAFCRAGELDGAERVVSLMREE--GNAKPNLVTF 226

Query: 242 IILYGYLAKGKDLERIWATVQEL------PNVRSKSYVLAIEAFGRIAQVSRAEELWLEM 295
             +   L K   +E       E+      P+V   SY   +  + ++  +  +  ++ EM
Sbjct: 227 NSMVNGLCKAGRMEGARKVFDEMVREGLAPDV--VSYNTLLSGYCKVGCLHESLAVFSEM 284

Query: 296 QSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLV 355
                +     + S+I   CK G +++A  L+ +M   G + N +T+  L  G  K   +
Sbjct: 285 TQRGLVPDVVTFTSLIHATCKAGNLEQAVALVAQMRERGLRMNEVTFTALIDGFCKKGFL 344

Query: 356 EEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKY 415
           ++   A+E   K           P +    ++I  + + G +  A  L  E++       
Sbjct: 345 DDALLAVEEMRKC-------GIQPSVVCYNALINGYCKLGRMDLARELIREMEAKRVKPD 397

Query: 416 TFVYNTLIKAYVKAKINDP--NLLRRMILGGARPDAETYSLL 455
              Y+T+I  Y K    D    L ++M+  G  PDA TYS L
Sbjct: 398 VVTYSTIISGYCKVGNLDSAFQLNQKMLKKGVLPDAITYSSL 439



 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 87/348 (25%), Positives = 149/348 (42%), Gaps = 19/348 (5%)

Query: 87  CIPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLV-FNRLIILNSSPGR 145
           C P    N + YN LV A    G +  +   +  MR  G++   LV FN ++      GR
Sbjct: 183 CAP----NAVTYNTLVAAFCRAGELDGAERVVSLMREEGNAKPNLVTFNSMVNGLCKAGR 238

Query: 146 RKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCI 205
            +    +  +M  + +AP V +++ L+        +   + V+S+M +  + P+ V++  
Sbjct: 239 MEGARKVFDEMVREGLAPDVVSYNTLLSGYCKVGCLHESLAVFSEMTQRGLVPDVVTFTS 298

Query: 206 LATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELP 265
           L  A   A     A   V  + +     N  T   LI   G+  KG  L+     V+E+ 
Sbjct: 299 LIHATCKAGNLEQAVALVAQMRERGLRMNEVTFTALID--GFCKKGF-LDDALLAVEEMR 355

Query: 266 NVRSKSYVLA----IEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFID 321
               +  V+     I  + ++ ++  A EL  EM++ +       Y+++IS YCK G +D
Sbjct: 356 KCGIQPSVVCYNALINGYCKLGRMDLARELIREMEAKRVKPDVVTYSTIISGYCKVGNLD 415

Query: 322 KASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWL 381
            A  L ++M   G  P+AITY  L  G     L EE  K L    +L          P  
Sbjct: 416 SAFQLNQKMLKKGVLPDAITYSSLIRG-----LCEE--KRLNDACELFENMLQLGVQPDE 468

Query: 382 ETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKA 429
            T  ++I+   ++G+V  A +L +E+ +         Y+ LI    K+
Sbjct: 469 FTYTTLIDGHCKEGNVEKALSLHDEMIRKGVLPDVVTYSVLINGLSKS 516



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 70/346 (20%), Positives = 133/346 (38%), Gaps = 19/346 (5%)

Query: 98  YNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMK 157
           YN L+      G +  SL    +M   G     + F  LI      G  +    ++ QM+
Sbjct: 261 YNTLLSGYCKVGCLHESLAVFSEMTQRGLVPDVVTFTSLIHATCKAGNLEQAVALVAQMR 320

Query: 158 ADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYT 217
              +  +  TF  L+        ++  +    +M++  ++P+ V Y  L   +       
Sbjct: 321 ERGLRMNEVTFTALIDGFCKKGFLDDALLAVEEMRKCGIQPSVVCYNALINGYCKLGRMD 380

Query: 218 VAETYVEALEKSMTGNNWSTLDVLIILY---GYLAKGKDLERIWATVQELPNVRSKSYVL 274
           +A   +  +E      +  T   +I  Y   G L     L +       LP+  + +Y  
Sbjct: 381 LARELIREMEAKRVKPDVVTYSTIISGYCKVGNLDSAFQLNQKMLKKGVLPD--AITYSS 438

Query: 275 AIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNG 334
            I       +++ A EL+  M  +        Y ++I  +CK G ++KA  L  EM   G
Sbjct: 439 LIRGLCEEKRLNDACELFENMLQLGVQPDEFTYTTLIDGHCKEGNVEKALSLHDEMIRKG 498

Query: 335 CKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPW-----------LET 383
             P+ +TY  L  G  KS   +E  + L    KL     V  +  +            ++
Sbjct: 499 VLPDVVTYSVLINGLSKSARTKEAHRLL---FKLYHEDPVPDNIKYDALMLCCSKAEFKS 555

Query: 384 TLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKA 429
            +++++ F  KG +  A+ +++ +   N+     VY+ LI  + + 
Sbjct: 556 VVALLKGFCMKGLMKEADKVYQSMLDRNWKLDGSVYSILIHGHCRG 601



 Score = 51.6 bits (122), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 75/379 (19%), Positives = 159/379 (41%), Gaps = 37/379 (9%)

Query: 53  IRERPYRPKELDYSYLLEFTIKNHGISQGEKLFCCIPKD--YQNELLYNNLVIACLDKGV 110
           + +R   P  + ++ L+  T K   + Q   L   + +     NE+ +  L+     KG 
Sbjct: 284 MTQRGLVPDVVTFTSLIHATCKAGNLEQAVALVAQMRERGLRMNEVTFTALIDGFCKKGF 343

Query: 111 IKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHI 170
           +  +L  +++MR  G   S + +N LI      GR      ++R+M+A +V P V T+  
Sbjct: 344 LDDALLAVEEMRKCGIQPSVVCYNALINGYCKLGRMDLARELIREMEAKRVKPDVVTYST 403

Query: 171 LMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAV-ARLYTVAETYVEALEKS 229
           ++       N++   ++   M +  V P+ ++Y  L        RL    E +   L+  
Sbjct: 404 IISGYCKVGNLDSAFQLNQKMLKKGVLPDAITYSSLIRGLCEEKRLNDACELFENMLQLG 463

Query: 230 MTGNNWSTLDVLIILYGYLAKGKDLERIWATVQE------LPNVRSKSYVLAIEAFGRIA 283
           +  + ++      ++ G+  +G ++E+  +   E      LP+V   +Y + I    + A
Sbjct: 464 VQPDEFT---YTTLIDGHCKEG-NVEKALSLHDEMIRKGVLPDV--VTYSVLINGLSKSA 517

Query: 284 QVSRAEELWLEM------------QSVKQLKATEQYNSVISV---YCKNGFIDKASGLLK 328
           +   A  L  ++             ++    +  ++ SV+++   +C  G + +A  + +
Sbjct: 518 RTKEAHRLLFKLYHEDPVPDNIKYDALMLCCSKAEFKSVVALLKGFCMKGLMKEADKVYQ 577

Query: 329 EMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSII 388
            M     K +   Y  L  G  +   V    KAL    +++ +    +ST    +T+S++
Sbjct: 578 SMLDRNWKLDGSVYSILIHGHCRGGNVR---KALSFHKQMLRSGFSPNST----STISLV 630

Query: 389 EIFAEKGDVGNAENLFEEL 407
               E+G V  A+N  ++L
Sbjct: 631 RGLFEEGMVVEADNAIQDL 649


>gi|115469638|ref|NP_001058418.1| Os06g0690900 [Oryza sativa Japonica Group]
 gi|52076717|dbj|BAD45630.1| putative fertility restorer [Oryza sativa Japonica Group]
 gi|53793285|dbj|BAD54507.1| putative fertility restorer [Oryza sativa Japonica Group]
 gi|113596458|dbj|BAF20332.1| Os06g0690900 [Oryza sativa Japonica Group]
          Length = 991

 Score = 85.1 bits (209), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 99/414 (23%), Positives = 167/414 (40%), Gaps = 57/414 (13%)

Query: 93  QNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNI 152
           +NE  Y  L+    D   ++ +L     M+  G S +   F  LI      GR      +
Sbjct: 251 RNEYSYTILIQGLCDAKCVRKALVLFLMMKRDGCSPNVRAFTFLISGLCKSGRVGDARLL 310

Query: 153 LRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAV 212
              M  + V P V T++ ++   +    +   +K+   M+++   P++ +Y  L      
Sbjct: 311 FDAMPQNGVVPSVMTYNAMIVGYSKLGRMNDALKIKELMEKNGCHPDDWTYNTL------ 364

Query: 213 ARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPN-VRSKS 271
             +Y + +   E  E+ +           ++ +  L  G  +   +     + N + S  
Sbjct: 365 --IYGLCDQKTEEAEELLNNAVKEGFTPTVVTFTNLINGYCMAEKFDDALRMKNKMMSSK 422

Query: 272 YVLAIEAFGRI-------AQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKAS 324
             L ++ FG++        ++  A+EL  E+ +   +     Y S+I  YCK+G +D A 
Sbjct: 423 CKLDLQVFGKLINSLIKKDRLKEAKELLNEISANGLVPNVITYTSIIDGYCKSGKVDIAL 482

Query: 325 GLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETT 384
            +LK M  +GC+PNA TY  L  G  K        K L   M L+T  +     P + T 
Sbjct: 483 EVLKMMERDGCQPNAWTYNSLMYGLVKD-------KKLHKAMALLTKMQKDGIIPNVITY 535

Query: 385 LSIIEIFAEKGDVGNAENLFE-------------------ELKKANYTK--YTFV----- 418
            ++++   ++ D  NA  LFE                    L KA   +  Y+F+     
Sbjct: 536 TTLLQGQCDEHDFDNAFRLFEMMEQNGLKPDEHAYAVLTDALCKAGRAEEAYSFIVRKGV 595

Query: 419 ------YNTLIKAYVKAKIND--PNLLRRMILGGARPDAETYSLLKLAEQFQKK 464
                 Y TLI  + KA   D    L+ RMI  G  PD+ TYS+L  A   QK+
Sbjct: 596 ALTKVYYTTLIDGFSKAGNTDFAATLIERMIDEGCTPDSYTYSVLLHALCKQKR 649



 Score = 74.7 bits (182), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 86/418 (20%), Positives = 167/418 (39%), Gaps = 68/418 (16%)

Query: 94  NELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNIL 153
           N + Y +++      G + ++LE +K M   G   +   +N L+       +      +L
Sbjct: 461 NVITYTSIIDGYCKSGKVDIALEVLKMMERDGCQPNAWTYNSLMYGLVKDKKLHKAMALL 520

Query: 154 RQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATA---- 209
            +M+ D + P+V T+  L++ + ++H+ +   +++  M+++ ++P+E +Y +L  A    
Sbjct: 521 TKMQKDGIIPNVITYTTLLQGQCDEHDFDNAFRLFEMMEQNGLKPDEHAYAVLTDALCKA 580

Query: 210 ------------HAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGY---------- 247
                         VA       T ++   K+   +  +TL   +I  G           
Sbjct: 581 GRAEEAYSFIVRKGVALTKVYYTTLIDGFSKAGNTDFAATLIERMIDEGCTPDSYTYSVL 640

Query: 248 ---LAKGKDLERIWATVQE--LPNVRSK--SYVLAIEAFGRIAQVSRAEELWLEMQSVKQ 300
              L K K L      + +  L  ++    +Y + I+   R  +   A+ ++ EM S   
Sbjct: 641 LHALCKQKRLNEALPILDQMSLRGIKCTIFAYTILIDEMLREGKHDHAKRMYNEMTSSGH 700

Query: 301 LKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFK 360
             +   Y   I+ YCK G ++ A  L+ +M   G  P+ +TY  L  GC     ++  F 
Sbjct: 701 KPSATTYTVFINSYCKEGRLEDAEDLILKMEREGVAPDVVTYNILIDGCGHMGYIDRAFS 760

Query: 361 ALE---------------------LGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGN 399
            L+                     L   L   + V +S  W     ++IE+     D+  
Sbjct: 761 TLKRMVGASCEPNYWTYCLLLKHLLKGNLAYVRSVDTSGMW-----NLIEL-----DI-- 808

Query: 400 AENLFEELKKANYTKYTFVYNTLIKAYVKA-KINDPNLLRRMILG-GARPDAETYSLL 455
              L E + K         Y++LI  + KA ++ +  LL   + G G  P+ + Y+LL
Sbjct: 809 TWQLLERMVKHGLNPTVTTYSSLIAGFCKAGRLEEACLLLDHMCGKGLSPNEDIYTLL 866



 Score = 52.0 bits (123), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 41/150 (27%), Positives = 68/150 (45%), Gaps = 9/150 (6%)

Query: 308 NSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMK 367
           N+++  YC+ G + KA  L   M + GC+ N  +Y  L  G   +  V    KAL L + 
Sbjct: 222 NALVLGYCRTGELRKACWLFLMMPLMGCQRNEYSYTILIQGLCDAKCVR---KALVLFLM 278

Query: 368 LITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYV 427
           +    K    +P +     +I    + G VG+A  LF+ + +         YN +I  Y 
Sbjct: 279 M----KRDGCSPNVRAFTFLISGLCKSGRVGDARLLFDAMPQNGVVPSVMTYNAMIVGYS 334

Query: 428 K-AKINDPNLLRRMI-LGGARPDAETYSLL 455
           K  ++ND   ++ ++   G  PD  TY+ L
Sbjct: 335 KLGRMNDALKIKELMEKNGCHPDDWTYNTL 364



 Score = 52.0 bits (123), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 64/288 (22%), Positives = 114/288 (39%), Gaps = 15/288 (5%)

Query: 153 LRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAV 212
           +R+  + ++A     ++  ++  A     E + +VYS + +  + P+ V+Y  +  ++  
Sbjct: 136 IRRTGSARLALSPKCYNFALRSLARFDMTEYMGRVYSQLVQDGLLPDTVTYNTMIKSYCK 195

Query: 213 ARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSK-- 270
               T A  Y   L +        T + L++  GY   G+  +  W  +  +P +  +  
Sbjct: 196 EGDLTTAHRYFRLLLEGGLEPETFTCNALVL--GYCRTGELRKACWLFLM-MPLMGCQRN 252

Query: 271 --SYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLK 328
             SY + I+       V +A  L+L M+          +  +IS  CK+G +  A  L  
Sbjct: 253 EYSYTILIQGLCDAKCVRKALVLFLMMKRDGCSPNVRAFTFLISGLCKSGRVGDARLLFD 312

Query: 329 EMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSII 388
            M  NG  P+ +TY  + +G  K   + +  K  EL       K       W   TL I 
Sbjct: 313 AMPQNGVVPSVMTYNAMIVGYSKLGRMNDALKIKEL-----MEKNGCHPDDWTYNTL-IY 366

Query: 389 EIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKINDPNL 436
            +  +K +   AE L     K  +T     +  LI  Y  A+  D  L
Sbjct: 367 GLCDQKTE--EAEELLNNAVKEGFTPTVVTFTNLINGYCMAEKFDDAL 412



 Score = 50.8 bits (120), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 60/302 (19%), Positives = 120/302 (39%), Gaps = 30/302 (9%)

Query: 152 ILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHA 211
           IL QM    +   +  + IL+     +   +   ++Y++M  S  +P+  +Y +   ++ 
Sbjct: 656 ILDQMSLRGIKCTIFAYTILIDEMLREGKHDHAKRMYNEMTSSGHKPSATTYTVFINSYC 715

Query: 212 VARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQEL------P 265
                  AE  +  +E+     +  T ++LI   G++     ++R ++T++ +      P
Sbjct: 716 KEGRLEDAEDLILKMEREGVAPDVVTYNILIDGCGHMGY---IDRAFSTLKRMVGASCEP 772

Query: 266 NVRSKSYVLAIEAFGRIAQVSRAEE--LW--LEMQSVKQL----------KATEQYNSVI 311
           N  +   +L     G +A V   +   +W  +E+    QL               Y+S+I
Sbjct: 773 NYWTYCLLLKHLLKGNLAYVRSVDTSGMWNLIELDITWQLLERMVKHGLNPTVTTYSSLI 832

Query: 312 SVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITT 371
           + +CK G +++A  LL  M   G  PN   Y  L   C  +   E+        +  ++ 
Sbjct: 833 AGFCKAGRLEEACLLLDHMCGKGLSPNEDIYTLLIKCCCDTKFFEK-------ALSFVSI 885

Query: 372 KKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKI 431
                  P LE+   ++     +GD    ++LF +L +  Y      +  L    +KA  
Sbjct: 886 MSECGFQPQLESYRLLVVGLCNEGDFEKVKSLFCDLLELGYNHDEVAWKILNDGLLKAGY 945

Query: 432 ND 433
            D
Sbjct: 946 VD 947


>gi|242095042|ref|XP_002438011.1| hypothetical protein SORBIDRAFT_10g006490 [Sorghum bicolor]
 gi|241916234|gb|EER89378.1| hypothetical protein SORBIDRAFT_10g006490 [Sorghum bicolor]
          Length = 1443

 Score = 85.1 bits (209), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 78/349 (22%), Positives = 153/349 (43%), Gaps = 24/349 (6%)

Query: 121 MRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHN 180
           +R  G   +  VFN ++ + +  GR      +L  M    + P + +F+ L+   +    
Sbjct: 212 LRFAGEGATVQVFNAMMGVYARSGRFDDARQLLDTMHDRGIDPDLVSFNTLINARSKSGC 271

Query: 181 IEG--LMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTL 238
           +     + +  ++++S + P+ ++Y  L +A + +     A T  E +  S    +  T 
Sbjct: 272 LAAGVALDLLFEVRQSGLRPDVITYNTLISACSQSSNLEDAVTVFEEMIASECRPDLWTY 331

Query: 239 DVLIILYGYLAKGKDLERIWATVQE---LPNVRSKSYVLAIEAFGRIAQVSRAEELWLEM 295
           + ++ ++G   K ++ ER++  + E   +P+  + +Y   + AF +   V + E    E+
Sbjct: 332 NAMVSVHGRCGKAEEAERLFGELVEKGFMPD--AVTYNSLLYAFAKEGNVDKVEHTCEEL 389

Query: 296 QSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLV 355
                 K    YN++I +Y K G +D A GL  EM   GC P+A+TY  +     K + +
Sbjct: 390 VKAGFKKNEITYNTMIHMYGKMGRLDLAVGLYDEMRAVGCTPDAVTYTVMIDSLGKMDKI 449

Query: 356 EEGFKALE----LGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKAN 411
            E  K LE     G+K           P L    ++I  +A+ G   +AE  F+ +  + 
Sbjct: 450 AEAGKVLEDMADAGLK-----------PTLVAFSALICAYAKGGRRADAEKTFDCMIASG 498

Query: 412 YTKYTFVYNTLIKAYVKAKINDP--NLLRRMILGGARPDAETYSLLKLA 458
                  Y  ++  + ++   +    L R M+    RPD + Y +L +A
Sbjct: 499 VKPDRLAYLVMLDVFARSGETEKMLRLYRTMMNDNYRPDDDMYQVLLVA 547



 Score = 48.5 bits (114), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 42/152 (27%), Positives = 72/152 (47%), Gaps = 11/152 (7%)

Query: 307  YNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKAL-ELG 365
            +NS++++Y   G  D+ + + + +   G +P+  TY  L +   +S   EEGF  L E+G
Sbjct: 923  FNSLLNMYTAAGNFDRTTQVYQSILEAGLEPDEDTYNTLIVMYCRSLRPEEGFTLLNEMG 982

Query: 366  MKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKA 425
                     R  TP L++  S++   A+      A+ LFEE++  +Y     +Y+ ++K 
Sbjct: 983  K--------RGLTPKLQSYKSLLAASAKAELREQADQLFEEMRSKSYQLNRSIYHMMMKI 1034

Query: 426  YVKAKIND--PNLLRRMILGGARPDAETYSLL 455
            Y  A  +    NLL  M   G  P   T  +L
Sbjct: 1035 YRNAGNHSKAENLLAVMKEDGIEPTIATMHIL 1066



 Score = 45.1 bits (105), Expect = 0.072,   Method: Compositional matrix adjust.
 Identities = 72/377 (19%), Positives = 151/377 (40%), Gaps = 15/377 (3%)

Query: 59  RPKELDYSYLLEFTIKNHGISQGEKLFC-CIPKDYQ-NELLYNNLVIACLDKGVIKLSLE 116
           RP    Y+ ++    +     + E+LF   + K +  + + YN+L+ A   +G +     
Sbjct: 325 RPDLWTYNAMVSVHGRCGKAEEAERLFGELVEKGFMPDAVTYNSLLYAFAKEGNVDKVEH 384

Query: 117 YMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEA 176
             +++   G   + + +N +I +    GR      +  +M+A    P   T+ +++    
Sbjct: 385 TCEELVKAGFKKNEITYNTMIHMYGKMGRLDLAVGLYDEMRAVGCTPDAVTYTVMIDSLG 444

Query: 177 NDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWS 236
               I    KV  DM  + ++P  V++  L  A+A       AE   + +  S    +  
Sbjct: 445 KMDKIAEAGKVLEDMADAGLKPTLVAFSALICAYAKGGRRADAEKTFDCMIASGVKPDRL 504

Query: 237 TLDVLIILYGYLAKGKDLERIWATVQELPNVRSKS--YVLAIEAFGRIAQVSRAEELWLE 294
              V++ ++    + + + R++ T+    N R     Y + + A  +  +    EE+  +
Sbjct: 505 AYLVMLDVFARSGETEKMLRLYRTMMN-DNYRPDDDMYQVLLVALAKEDKCEEIEEIIQD 563

Query: 295 MQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNL 354
           M+ + Q+        +I   C    + +   LLK+  + G KP+A +   +      +  
Sbjct: 564 MELLCQMSLGVISTILIKARC----VSQGGKLLKKACLQGYKPDAKSLWSIMNAYVMTEK 619

Query: 355 VEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTK 414
            EEG   LE        +   SS+  L +  SII +  ++  +   E   + L      +
Sbjct: 620 HEEGLSLLE------CIRDHVSSSQDLISECSIILLCRKQTSISAYEQYSQRLMLKYPGQ 673

Query: 415 YTFVYNTLIKAYVKAKI 431
              +Y  LI   V+A++
Sbjct: 674 NCNLYEHLITCLVEAEL 690



 Score = 43.5 bits (101), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 41/179 (22%), Positives = 70/179 (39%), Gaps = 30/179 (16%)

Query: 305  EQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALE- 363
            + YN++I +YC++   ++   LL EM   G  P   +Y+ L     K+ L E+  +  E 
Sbjct: 956  DTYNTLIVMYCRSLRPEEGFTLLNEMGKRGLTPKLQSYKSLLAASAKAELREQADQLFEE 1015

Query: 364  --------------LGMK-------------LITTKKVRSSTPWLETTLSIIEIFAEKGD 396
                          + MK             L+   K     P + T   ++  +   G 
Sbjct: 1016 MRSKSYQLNRSIYHMMMKIYRNAGNHSKAENLLAVMKEDGIEPTIATMHILMTSYGTAGQ 1075

Query: 397  VGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKINDPNL--LRRMILGGARPDAETYS 453
               AEN+   LK ++    T  Y+T+  AY+K    D  +  L  M   G  PD + ++
Sbjct: 1076 PHEAENVLNSLKSSSLEVSTLPYSTVFDAYLKNGDYDLGIKKLLEMKRDGVEPDHQVWT 1134


>gi|125580966|gb|EAZ21897.1| hypothetical protein OsJ_05550 [Oryza sativa Japonica Group]
          Length = 595

 Score = 85.1 bits (209), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 81/349 (23%), Positives = 148/349 (42%), Gaps = 12/349 (3%)

Query: 16  SWMRE-GFPVHRGEIFHSINRLRKLQLNKRALEVMEWVIRERPYRPKELDYSYLLEFTIK 74
           S MRE G P +       ++ L K +  ++A+EV + + RER  R     ++ ++    K
Sbjct: 234 SEMREHGIPPNATVYNAYLDGLLKARCTEKAVEVYQRMKRER-CRANTETFTLMINVYGK 292

Query: 75  NHGISQGEKLF------CCIPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSI 128
                   K+F       C P    N   Y  LV A   +G+ + + E  ++M+  GH  
Sbjct: 293 AKQPMSSMKVFNEMKSIGCKP----NICTYTALVNAFAREGLCEKAEEVFEEMQQAGHEP 348

Query: 129 SYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVY 188
               +N L+   S  G  +    I   M+     P  ++++IL+         E    V+
Sbjct: 349 DVYAYNALMEAYSRAGLPQGASEIFSLMQHMGCEPDRASYNILVDAYGRAGLHEDAEAVF 408

Query: 189 SDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYL 248
            ++K+  + P   S+ +L  AHA +   T  E  +  L KS    +   L+ ++  Y   
Sbjct: 409 EELKQRGMSPTMKSHMLLLAAHARSGNATRCEEVMAQLHKSGLTPDTFALNAMLNAYARA 468

Query: 249 AKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYN 308
            +  D+ER++A ++   +    +Y +A+ A+GR   V R E  +  + +         + 
Sbjct: 469 GRLDDMERLFAAMERRGDADVGTYNVAVNAYGRAGYVGRMEAAFAAVAARGLAADVVTWT 528

Query: 309 SVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEE 357
           + +  Y +     +  G+++EM   GC P+A T R L   C     VE+
Sbjct: 529 ARMGAYARRKEYGRCVGMVEEMVDAGCYPDAGTARVLLAACSDERQVEQ 577



 Score = 81.3 bits (199), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 65/299 (21%), Positives = 126/299 (42%), Gaps = 13/299 (4%)

Query: 160 KVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVA 219
           +  P   T+ +L++   N  ++     V S+M+   + PN   Y         AR    A
Sbjct: 205 QCVPTEDTYALLLRAYCNAGSLHRAEGVISEMREHGIPPNATVYNAYLDGLLKARCTEKA 264

Query: 220 ETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQEL---PNVRSKSYVLAI 276
               + +++     N  T  ++I +YG   +     +++  ++ +   PN+   +Y   +
Sbjct: 265 VEVYQRMKRERCRANTETFTLMINVYGKAKQPMSSMKVFNEMKSIGCKPNI--CTYTALV 322

Query: 277 EAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCK 336
            AF R     +AEE++ EMQ          YN+++  Y + G    AS +   M   GC+
Sbjct: 323 NAFAREGLCEKAEEVFEEMQQAGHEPDVYAYNALMEAYSRAGLPQGASEIFSLMQHMGCE 382

Query: 337 PNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGD 396
           P+  +Y  L     ++ L E+     E         K R  +P +++ + ++   A  G+
Sbjct: 383 PDRASYNILVDAYGRAGLHEDAEAVFE-------ELKQRGMSPTMKSHMLLLAAHARSGN 435

Query: 397 VGNAENLFEELKKANYTKYTFVYNTLIKAYVKA-KINDPNLLRRMILGGARPDAETYSL 454
               E +  +L K+  T  TF  N ++ AY +A +++D   L   +      D  TY++
Sbjct: 436 ATRCEEVMAQLHKSGLTPDTFALNAMLNAYARAGRLDDMERLFAAMERRGDADVGTYNV 494



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 53/217 (24%), Positives = 96/217 (44%), Gaps = 36/217 (16%)

Query: 272 YVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMS 331
           Y L IE++G+  Q+++AE +++ +   + +   + Y  ++  YC  G + +A G++ EM 
Sbjct: 178 YNLLIESYGKKRQLNKAESIYMALLEAQCVPTEDTYALLLRAYCNAGSLHRAEGVISEMR 237

Query: 332 MNGCKPNAITYRHLALGCFKSNLVEEGFKALEL--------------------------- 364
            +G  PNA  Y     G  K+   E   KA+E+                           
Sbjct: 238 EHGIPPNATVYNAYLDGLLKARCTE---KAVEVYQRMKRERCRANTETFTLMINVYGKAK 294

Query: 365 ----GMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYN 420
                MK+    K     P + T  +++  FA +G    AE +FEE+++A +    + YN
Sbjct: 295 QPMSSMKVFNEMKSIGCKPNICTYTALVNAFAREGLCEKAEEVFEEMQQAGHEPDVYAYN 354

Query: 421 TLIKAYVKAKI--NDPNLLRRMILGGARPDAETYSLL 455
            L++AY +A +      +   M   G  PD  +Y++L
Sbjct: 355 ALMEAYSRAGLPQGASEIFSLMQHMGCEPDRASYNIL 391



 Score = 63.9 bits (154), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 81/438 (18%), Positives = 179/438 (40%), Gaps = 30/438 (6%)

Query: 33  INRLRKLQLNKR---ALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQGEKLFC--- 86
           +N   + ++NK+    + V EW++    +RP  + Y+ L+E   K   +++ E ++    
Sbjct: 143 VNVAVQFRMNKKWDLIIPVCEWILYRSSFRPDIICYNLLIESYGKKRQLNKAESIYMALL 202

Query: 87  ---CIPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNR-LIILNSS 142
              C+P     E  Y  L+ A  + G +  +   + +MR  G   +  V+N  L  L  +
Sbjct: 203 EAQCVP----TEDTYALLLRAYCNAGSLHRAEGVISEMREHGIPPNATVYNAYLDGLLKA 258

Query: 143 PGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVS 202
               K +  + ++MK ++   +  TF +++ +          MKV+++MK    +PN  +
Sbjct: 259 RCTEKAV-EVYQRMKRERCRANTETFTLMINVYGKAKQPMSSMKVFNEMKSIGCKPNICT 317

Query: 203 YCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQ 262
           Y  L  A A   L   AE   E ++++    +    + L+  Y      +    I++ +Q
Sbjct: 318 YTALVNAFAREGLCEKAEEVFEEMQQAGHEPDVYAYNALMEAYSRAGLPQGASEIFSLMQ 377

Query: 263 EL---PNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGF 319
            +   P+    SY + ++A+GR      AE ++ E++        + +  +++ + ++G 
Sbjct: 378 HMGCEPD--RASYNILVDAYGRAGLHEDAEAVFEELKQRGMSPTMKSHMLLLAAHARSGN 435

Query: 320 IDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTP 379
             +   ++ ++  +G  P+      +     ++  +++        M+ +     R    
Sbjct: 436 ATRCEEVMAQLHKSGLTPDTFALNAMLNAYARAGRLDD--------MERLFAAMERRGDA 487

Query: 380 WLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKINDP--NLL 437
            + T    +  +   G VG  E  F  +           +   + AY + K       ++
Sbjct: 488 DVGTYNVAVNAYGRAGYVGRMEAAFAAVAARGLAADVVTWTARMGAYARRKEYGRCVGMV 547

Query: 438 RRMILGGARPDAETYSLL 455
             M+  G  PDA T  +L
Sbjct: 548 EEMVDAGCYPDAGTARVL 565


>gi|15235161|ref|NP_195672.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75266408|sp|Q9SV96.1|PP358_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g39620, chloroplastic; AltName: Full=Protein EMBRYO
           DEFECTIVE 2453; Flags: Precursor
 gi|5042178|emb|CAB44697.1| putative protein [Arabidopsis thaliana]
 gi|7270946|emb|CAB80625.1| putative protein [Arabidopsis thaliana]
 gi|58013022|gb|AAW62964.1| chloroplast embryo-defective 2453 [Arabidopsis thaliana]
 gi|332661694|gb|AEE87094.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 563

 Score = 85.1 bits (209), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 84/371 (22%), Positives = 162/371 (43%), Gaps = 23/371 (6%)

Query: 44  RALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQGEKLFC------CIPKDYQNELL 97
           + LEV  W+ ++R Y P    YS L+    K         LF       C P    +  +
Sbjct: 115 QCLEVFRWMQKQRWYIPDNGVYSKLISVMGKKGQTRMAMWLFSEMKNSGCRP----DASV 170

Query: 98  YNNLVIACLDKGVIKLSLE----YMKKMRVLGHSISYLV-FNRLIILNSSPGRRKTIPNI 152
           YN L+ A L       +LE    Y+ KM+ +      +V +N L+   +  G+   +  +
Sbjct: 171 YNALITAHLHTRDKAKALEKVRGYLDKMKGIERCQPNVVTYNILLRAFAQSGKVDQVNAL 230

Query: 153 LRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAV 212
            + +    V+P V TF+ +M     +  I+ +  V + M+ +E +P+ +++ +L  ++  
Sbjct: 231 FKDLDMSPVSPDVYTFNGVMDAYGKNGMIKEMEAVLTRMRSNECKPDIITFNVLIDSYGK 290

Query: 213 ARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRS-KS 271
            + +   E   ++L +S       T + +II YG        E ++  + ++  + S  +
Sbjct: 291 KQEFEKMEQTFKSLMRSKEKPTLPTFNSMIINYGKARMIDKAEWVFKKMNDMNYIPSFIT 350

Query: 272 YVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMS 331
           Y   I  +G    VSRA E++ E+    ++      N+++ VYC+NG   +A  L    S
Sbjct: 351 YECMIMMYGYCGSVSRAREIFEEVGESDRVLKASTLNAMLEVYCRNGLYIEADKLFHNAS 410

Query: 332 MNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIF 391
                P+A TY+ L     K+++ E+    +++ MK +    +    P     L  +E+F
Sbjct: 411 AFRVHPDASTYKFLYKAYTKADMKEQ----VQILMKKMEKDGI---VPNKRFFLEALEVF 463

Query: 392 AEKGDVGNAEN 402
             +     +EN
Sbjct: 464 GSRLPGSGSEN 474



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 69/331 (20%), Positives = 142/331 (42%), Gaps = 19/331 (5%)

Query: 132 VFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHN----IEGLMKV 187
           V+++LI +    G+ +    +  +MK     P  S ++ L+    +  +    +E +   
Sbjct: 135 VYSKLISVMGKKGQTRMAMWLFSEMKNSGCRPDASVYNALITAHLHTRDKAKALEKVRGY 194

Query: 188 YSDMKRSE-VEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYG 246
              MK  E  +PN V+Y IL  A A +          + L+ S    +  T + ++  YG
Sbjct: 195 LDKMKGIERCQPNVVTYNILLRAFAQSGKVDQVNALFKDLDMSPVSPDVYTFNGVMDAYG 254

Query: 247 YLAKGKDLERIWATVQE---LPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKA 303
                K++E +   ++     P++   ++ + I+++G+  +  + E+ +  +   K+   
Sbjct: 255 KNGMIKEMEAVLTRMRSNECKPDI--ITFNVLIDSYGKKQEFEKMEQTFKSLMRSKEKPT 312

Query: 304 TEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALE 363
              +NS+I  Y K   IDKA  + K+M+     P+ ITY  + +       V    +A E
Sbjct: 313 LPTFNSMIINYGKARMIDKAEWVFKKMNDMNYIPSFITYECMIMMYGYCGSVS---RARE 369

Query: 364 LGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLI 423
           +  ++  + +V  ++    T  +++E++   G    A+ LF              Y  L 
Sbjct: 370 IFEEVGESDRVLKAS----TLNAMLEVYCRNGLYIEADKLFHNASAFRVHPDASTYKFLY 425

Query: 424 KAYVKAKINDPN--LLRRMILGGARPDAETY 452
           KAY KA + +    L+++M   G  P+   +
Sbjct: 426 KAYTKADMKEQVQILMKKMEKDGIVPNKRFF 456



 Score = 50.1 bits (118), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 50/193 (25%), Positives = 84/193 (43%), Gaps = 7/193 (3%)

Query: 267 VRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVK-QLKATEQYNSVISVYCKNGFIDKASG 325
           VR     L  E  G+  +  +  E++  MQ  +  +     Y+ +ISV  K G    A  
Sbjct: 95  VRCDHCFLLFEELGKSDKWLQCLEVFRWMQKQRWYIPDNGVYSKLISVMGKKGQTRMAMW 154

Query: 326 LLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALE-LGMKLITTKKVRSSTPWLETT 384
           L  EM  +GC+P+A  Y  L      +    +  KALE +   L   K +    P + T 
Sbjct: 155 LFSEMKNSGCRPDASVYNALITAHLHT---RDKAKALEKVRGYLDKMKGIERCQPNVVTY 211

Query: 385 LSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKI--NDPNLLRRMIL 442
             ++  FA+ G V     LF++L  +  +   + +N ++ AY K  +      +L RM  
Sbjct: 212 NILLRAFAQSGKVDQVNALFKDLDMSPVSPDVYTFNGVMDAYGKNGMIKEMEAVLTRMRS 271

Query: 443 GGARPDAETYSLL 455
              +PD  T+++L
Sbjct: 272 NECKPDIITFNVL 284


>gi|225439731|ref|XP_002272943.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53700,
           chloroplastic [Vitis vinifera]
          Length = 772

 Score = 85.1 bits (209), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 83/367 (22%), Positives = 167/367 (45%), Gaps = 21/367 (5%)

Query: 98  YNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMK 157
           YN+L+      G ++ ++E + +M +   S + + +N LI       + +    + R + 
Sbjct: 354 YNSLIFGLCKLGEVEEAVEILNQMILRDFSPNTVTYNTLISTLCKENQVEEATELARVLT 413

Query: 158 ADKVAPHVSTFHILMK--IEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARL 215
           +  + P V TF+ L++     N+H +   M+++ +MK     P+E +Y +L  +      
Sbjct: 414 SKGILPDVCTFNSLIQGLCLTNNHRLA--MELFEEMKTKGCHPDEFTYNMLIDSLCSRGR 471

Query: 216 YTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSK--SYV 273
              A + ++ +E S    N  T + LI  +    + ++ E I+  + EL  +     +Y 
Sbjct: 472 LEEALSLLKEMESSGCSRNVVTYNTLIDGFCKNKRIEEAEEIFDEM-ELQGISRNVVTYN 530

Query: 274 LAIEAFGRIAQVSRAEELW--LEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMS 331
             I+   +  +V  A +L   + M+ +K  K T  YNS+++ +C+ G I KA+ +++ M+
Sbjct: 531 TLIDGLCKNRRVEEAAQLMDQMLMEGLKPDKFT--YNSLLTYFCRAGDIKKAADIVQTMT 588

Query: 332 MNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIF 391
            NGC+P+++TY  L LG  K+  V       EL  +L+ T +++      +T   +I+  
Sbjct: 589 SNGCEPDSVTYGTLILGLSKAGRV-------ELASRLLRTVQLKGMVLAPQTYNPVIKAL 641

Query: 392 AEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVK--AKINDP-NLLRRMILGGARPD 448
             +     A  LF E+ +         Y  + +        I +  + L  M   G  PD
Sbjct: 642 FREKRTSEAVRLFREMMEKGDPPDAVTYKVVFRGLCSGGGPIGEAVDFLVEMTDKGFLPD 701

Query: 449 AETYSLL 455
             ++ +L
Sbjct: 702 FSSFLML 708



 Score = 74.7 bits (182), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 84/342 (24%), Positives = 148/342 (43%), Gaps = 24/342 (7%)

Query: 124 LGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEG 183
            G  +    +N L+ +     + K +  +  +M +  + P V+TF+IL+K     H I  
Sbjct: 170 FGLKLDAFTYNFLLNVLVDGNKLKLVEIVNSRMVSRGIKPDVTTFNILIKALCRAHQIRP 229

Query: 184 LMKVYSDMKRSEVEPNEVSYCILATAHA----VARLYTVAETYVEALEKSMTGNNWSTLD 239
            + +  +M    + P+E ++  L         +     + E  V A      G   S + 
Sbjct: 230 AILMMEEMGSYGLSPDEKTFTTLMQGFIEEGNMNGALRIREQMVAA------GCPSSNVT 283

Query: 240 VLIILYGYLAKGKDLERIWATVQELPN--VRSKSYVL--AIEAFGRIAQVSRAEELWLEM 295
           V ++++GY  +G+ +E + + + E+ N   R   +     +    RI  V  A E+   M
Sbjct: 284 VNVLVHGYCKEGR-IEEVLSFIDEMSNEGFRPDRFTFNSLVNGLCRIGHVKHALEILDVM 342

Query: 296 QSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLV 355
                      YNS+I   CK G +++A  +L +M +    PN +TY  L     K N V
Sbjct: 343 LQEGFDPDIFTYNSLIFGLCKLGEVEEAVEILNQMILRDFSPNTVTYNTLISTLCKENQV 402

Query: 356 EEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKY 415
           EE   A EL  +++T+K +    P + T  S+I+      +   A  LFEE+K       
Sbjct: 403 EE---ATELA-RVLTSKGI---LPDVCTFNSLIQGLCLTNNHRLAMELFEEMKTKGCHPD 455

Query: 416 TFVYNTLIKAYV-KAKINDP-NLLRRMILGGARPDAETYSLL 455
            F YN LI +   + ++ +  +LL+ M   G   +  TY+ L
Sbjct: 456 EFTYNMLIDSLCSRGRLEEALSLLKEMESSGCSRNVVTYNTL 497



 Score = 52.4 bits (124), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 59/259 (22%), Positives = 109/259 (42%), Gaps = 2/259 (0%)

Query: 92  YQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPN 151
           + +E  YN L+ +   +G ++ +L  +K+M   G S + + +N LI       R +    
Sbjct: 453 HPDEFTYNMLIDSLCSRGRLEEALSLLKEMESSGCSRNVVTYNTLIDGFCKNKRIEEAEE 512

Query: 152 ILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHA 211
           I  +M+   ++ +V T++ L+     +  +E   ++   M    ++P++ +Y  L T   
Sbjct: 513 IFDEMELQGISRNVVTYNTLIDGLCKNRRVEEAAQLMDQMLMEGLKPDKFTYNSLLTYFC 572

Query: 212 VARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRS-K 270
            A     A   V+ +  +    +  T   LI+      + +   R+  TVQ    V + +
Sbjct: 573 RAGDIKKAADIVQTMTSNGCEPDSVTYGTLILGLSKAGRVELASRLLRTVQLKGMVLAPQ 632

Query: 271 SYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGF-IDKASGLLKE 329
           +Y   I+A  R  + S A  L+ EM           Y  V    C  G  I +A   L E
Sbjct: 633 TYNPVIKALFREKRTSEAVRLFREMMEKGDPPDAVTYKVVFRGLCSGGGPIGEAVDFLVE 692

Query: 330 MSMNGCKPNAITYRHLALG 348
           M+  G  P+  ++  LA G
Sbjct: 693 MTDKGFLPDFSSFLMLAEG 711


>gi|302769173|ref|XP_002968006.1| hypothetical protein SELMODRAFT_88008 [Selaginella moellendorffii]
 gi|300164744|gb|EFJ31353.1| hypothetical protein SELMODRAFT_88008 [Selaginella moellendorffii]
          Length = 737

 Score = 85.1 bits (209), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 110/472 (23%), Positives = 193/472 (40%), Gaps = 72/472 (15%)

Query: 36  LRKLQLNKRALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQGEKLF----C--CIP 89
           L++L    +A++  +W   +  Y+  +   + LL   ++     +   LF    C  C P
Sbjct: 106 LQQLDDLDKAVKFFDWCTGQPGYKHSKFTCNCLLSAFVRKKKAQEAYDLFKNHRCGLCSP 165

Query: 90  KDYQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTI 149
                  L N    A   +   +L L+ M+K  ++ H+    V+N +I      GR  + 
Sbjct: 166 DSITYSTLINGFCKARDFQQAYRL-LDEMEKRGIVPHNA---VYNTIIKGLCDNGRVDSA 221

Query: 150 PNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATA 209
               R M+ +  AP V T+ IL+        I     +  DM  +   PN V+Y  L   
Sbjct: 222 LVHYRDMQRN-CAPSVITYTILVDALCKSARISDASLILEDMIEAGCAPNVVTYNTLI-- 278

Query: 210 HAVARLYTVAETYV---EALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQEL-- 264
           +   +L  + E  V   + LE S + + + T ++LI  Y    + +D  ++   +QE+  
Sbjct: 279 NGFCKLGNMDEAVVLFNQMLENSCSPDVF-TYNILIDGYCKQERPQDGAKL---LQEMVK 334

Query: 265 ----PN-----------VRSKSYV----------------------LAIEAFGRIAQVSR 287
               PN           V+S  Y+                      L I+ F ++ Q+  
Sbjct: 335 YGCEPNFITYNTLMDSLVKSGKYIDAFNLAQMMLRRDCKPSHFTFNLMIDMFCKVGQLDL 394

Query: 288 AEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLAL 347
           A EL+  M     L     YN +IS  C+   ID A  LL+ M+  GC P+ +TY  +  
Sbjct: 395 AYELFQLMTDRGCLPDIYTYNIMISGACRANRIDDARQLLERMTEAGCPPDVVTYNSIVS 454

Query: 348 GCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLE--TTLSIIEIFAEKGDVGNAENLFE 405
           G  K++ V+E ++  E+         +R+   +L+  T  ++I+   +   + +AE L  
Sbjct: 455 GLCKASQVDEAYEVYEV---------LRNGGYFLDVVTCSTLIDGLCKSRRLDDAEKLLR 505

Query: 406 ELKKANYTKYTFVYNTLIKAYVKAKINDPNL--LRRMILGGARPDAETYSLL 455
           E+++         Y  LI  + KA   D +L     M+  G  P   TYS++
Sbjct: 506 EMERNGSAPDVVAYTILIHGFCKADQLDKSLAFFSEMLDKGCVPTVITYSIV 557



 Score = 60.1 bits (144), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 88/407 (21%), Positives = 144/407 (35%), Gaps = 53/407 (13%)

Query: 55  ERPYRPKELDYSYLLEFTIKNHGISQGEKL------FCCIPKDYQNELLYNNLVIACLDK 108
           E    P    Y+ L++   K      G KL      + C P    N + YN L+ + +  
Sbjct: 299 ENSCSPDVFTYNILIDGYCKQERPQDGAKLLQEMVKYGCEP----NFITYNTLMDSLVKS 354

Query: 109 GVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTF 168
           G    +    + M       S+  FN +I +    G+      + + M      P + T+
Sbjct: 355 GKYIDAFNLAQMMLRRDCKPSHFTFNLMIDMFCKVGQLDLAYELFQLMTDRGCLPDIYTY 414

Query: 169 HILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEK 228
           +I++      + I+   ++   M  +   P+ V+Y   +    + +   V E Y E  E 
Sbjct: 415 NIMISGACRANRIDDARQLLERMTEAGCPPDVVTY--NSIVSGLCKASQVDEAY-EVYEV 471

Query: 229 SMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRA 288
              G  +  LDV+                  T   L           I+   +  ++  A
Sbjct: 472 LRNGGYF--LDVV------------------TCSTL-----------IDGLCKSRRLDDA 500

Query: 289 EELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALG 348
           E+L  EM+          Y  +I  +CK   +DK+     EM   GC P  ITY  +   
Sbjct: 501 EKLLREMERNGSAPDVVAYTILIHGFCKADQLDKSLAFFSEMLDKGCVPTVITYSIVIDK 560

Query: 349 CFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELK 408
             KS  V +G         L+ T   R  TP      S+I+   +      A  L++ +K
Sbjct: 561 LCKSARVRDG-------CMLLKTMLERGVTPDAIVYTSVIDGLCKSDSYDEAYELYKLMK 613

Query: 409 KANYTKYTFVYNTLIKAYVKAKINDP--NLLRRMILGGARPDAETYS 453
           +         YN L+    K    D   +LL  M   G  PD  TY+
Sbjct: 614 QTGCAPTVVTYNVLVDKLCKVSRLDEAIHLLEVMESDGCLPDTVTYN 660



 Score = 50.1 bits (118), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 67/314 (21%), Positives = 123/314 (39%), Gaps = 41/314 (13%)

Query: 98  YNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMK 157
           YN++V        +  + E  + +R  G+ +  +  + LI       R      +LR+M+
Sbjct: 449 YNSIVSGLCKASQVDEAYEVYEVLRNGGYFLDVVTCSTLIDGLCKSRRLDDAEKLLREME 508

Query: 158 ADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYT 217
            +  AP V  + IL+        ++  +  +S+M      P  ++Y I+           
Sbjct: 509 RNGSAPDVVAYTILIHGFCKADQLDKSLAFFSEMLDKGCVPTVITYSIV----------- 557

Query: 218 VAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSKSYVLAIE 277
                ++ L KS         D  ++L   L +G   + I              Y   I+
Sbjct: 558 -----IDKLCKSA-----RVRDGCMLLKTMLERGVTPDAIV-------------YTSVID 594

Query: 278 AFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKP 337
              +      A EL+  M+          YN ++   CK   +D+A  LL+ M  +GC P
Sbjct: 595 GLCKSDSYDEAYELYKLMKQTGCAPTVVTYNVLVDKLCKVSRLDEAIHLLEVMESDGCLP 654

Query: 338 NAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDV 397
           + +TY  +  G +KS   ++ F+  +  MK     +  S TP++ + L    +  EK D 
Sbjct: 655 DTVTYNSVFDGFWKSAEHDKAFRLFQ-AMK----SRGCSPTPFMYSLLLTKLVAEEKMD- 708

Query: 398 GNAENLFEELKKAN 411
             A  ++EE  +A 
Sbjct: 709 -QAMEIWEEALEAG 721


>gi|413949109|gb|AFW81758.1| hypothetical protein ZEAMMB73_033635 [Zea mays]
          Length = 691

 Score = 84.7 bits (208), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 90/407 (22%), Positives = 173/407 (42%), Gaps = 21/407 (5%)

Query: 58  YRPKELDYSYLLEFTIKNHGISQGEKLFCCIPKD--YQNELLYNNLVIACLDKGVIKLSL 115
           Y P  L Y+ +L   + +  ++   + F  +  D    N   YN L+ A   +G  K +L
Sbjct: 112 YVPSVLAYNAVL-LALSDASLTSARRFFDSMLSDGVAPNVYTYNILIRALCGRGHRKEAL 170

Query: 116 EYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIE 175
             ++ MR  G   + + +N L+      G       ++  M    + P++ TF+ ++   
Sbjct: 171 SILRDMRGAGCGPNVVTYNTLVAAFFRAGEVDGAERLVGMMLDGGLKPNLVTFNSMVNGM 230

Query: 176 ANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARL-YTVAETYVEALEKSMTGNN 234
                +E   KV+ +M R  + P+ VSY  L   +  A   +     + E  +K +  + 
Sbjct: 231 CKAGKMEDARKVFDEMMREGLAPDGVSYNTLVGGYCKAGCSHEALSVFAEMTQKGIMPDV 290

Query: 235 WSTLDVLIILYGYLAKGKDLERIWATVQELP----NVRSKSYVLAIEAFGRIAQVSRAEE 290
            +   ++ +    + K  +LE     V+++      +   ++   I+ F +   +  A  
Sbjct: 291 VTFTSLIHV----MCKAGNLEWAVTLVRQMRERGLQMNEVTFTALIDGFCKKGFLDDALL 346

Query: 291 LWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCF 350
               M+  +   +   YN++I+ YC  G +D+A  LL EM   G KP+ +TY  + +  +
Sbjct: 347 AVRGMRQCRIKPSVVCYNALINGYCMVGRMDEARELLHEMEAKGLKPDVVTYSTI-ISAY 405

Query: 351 KSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKA 410
             N   +   A EL  +++     +   P   T  S+I +  E+  + +A  LF+ + K 
Sbjct: 406 CKNC--DTHSAFELNQQMLE----KGVLPDAITYSSLIRVLCEEKRLSDAHVLFKNMIKL 459

Query: 411 NYTKYTFVYNTLIKAYVKAKINDP--NLLRRMILGGARPDAETYSLL 455
                 F Y +LI  + K    +   +L  +M+  G  PD  TYS+L
Sbjct: 460 GLQPDEFTYTSLIDGHCKEGNVERALSLHDKMVKAGVLPDVVTYSVL 506



 Score = 55.8 bits (133), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 73/349 (20%), Positives = 138/349 (39%), Gaps = 25/349 (7%)

Query: 98  YNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMK 157
           YN LV      G    +L    +M   G     + F  LI +    G  +    ++RQM+
Sbjct: 258 YNTLVGGYCKAGCSHEALSVFAEMTQKGIMPDVVTFTSLIHVMCKAGNLEWAVTLVRQMR 317

Query: 158 ADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYT 217
              +  +  TF  L+        ++  +     M++  ++P+ V Y  L   + +     
Sbjct: 318 ERGLQMNEVTFTALIDGFCKKGFLDDALLAVRGMRQCRIKPSVVCYNALINGYCMVGRMD 377

Query: 218 VAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQE------LPNVRSKS 271
            A   +  +E      +  T   +I  Y    K  D    +   Q+      LP+  + +
Sbjct: 378 EARELLHEMEAKGLKPDVVTYSTIISAY---CKNCDTHSAFELNQQMLEKGVLPD--AIT 432

Query: 272 YVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMS 331
           Y   I       ++S A  L+  M  +        Y S+I  +CK G +++A  L  +M 
Sbjct: 433 YSSLIRVLCEEKRLSDAHVLFKNMIKLGLQPDEFTYTSLIDGHCKEGNVERALSLHDKMV 492

Query: 332 MNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPW----------- 380
             G  P+ +TY  L  G  KS       +A +L  KL   + + ++T +           
Sbjct: 493 KAGVLPDVVTYSVLINGLSKS---ARAMEAQQLLFKLYHEEPIPANTKYDALMHCCRKAE 549

Query: 381 LETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKA 429
           L++ L++++ F  KG +  A+ +++ +   N+     VY+ LI  + +A
Sbjct: 550 LKSVLALLKGFCMKGLMNEADKVYQSMLDRNWNLDGSVYSVLIHGHCRA 598


>gi|357142605|ref|XP_003572629.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09900-like [Brachypodium distachyon]
          Length = 543

 Score = 84.7 bits (208), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 78/345 (22%), Positives = 144/345 (41%), Gaps = 16/345 (4%)

Query: 121 MRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHN 180
           +  LG S + + +N ++   +   R   I    R + +   AP   T++ L++       
Sbjct: 119 VEALGPSATIITYNTMV---NGYCRAGNIDAARRMIDSVPFAPDTFTYNPLIRALCVRGC 175

Query: 181 IEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDV 240
           +   + V+ DM      P+ V+Y IL  A      Y  A   ++ +       +  T +V
Sbjct: 176 VLDALAVFDDMLHRGCSPSVVTYSILLDATCKESGYKQAVVLLDEMRSKGCEPDIVTYNV 235

Query: 241 LIILYGYLAKGKDLERIWATVQELPNVRSK----SYVLAIEAFGRIAQVSRAEELWLEMQ 296
           LI     +    D+      +  LP+   K    +Y   +++     +   A++L  +M 
Sbjct: 236 LI---NAMCSQGDVGEALKVLNSLPSYGCKPDAVTYTPVLKSLCSSERWEEADKLLTKMF 292

Query: 297 SVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVE 356
           S         +N+VI+  C+ GF+ +A+ +L +MS +GC P+ ITY  +  G  K   V+
Sbjct: 293 SNDCAPDEVTFNAVITSLCQKGFVGRATKVLAQMSEHGCTPDIITYSSIMDGLCKERRVD 352

Query: 357 EGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYT 416
           E  K L+   +L+     ++  P   T  +II    +KG    A  + +E+ +       
Sbjct: 353 EAIKLLK---ELLAEMVSKNCIPDQVTFNTIITSLCQKGLFDRAIKVVDEMSEHGCIPDI 409

Query: 417 FVYNTLIKAYV--KAKINDP-NLLRRMILGGARPDAETYSLLKLA 458
             YN ++  ++    K  +  +LL  M+  G  PD  TY  L   
Sbjct: 410 TTYNCIVDGFLCKSCKTEEALDLLNLMVSNGLCPDTTTYKSLAFG 454



 Score = 41.2 bits (95), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 77/367 (20%), Positives = 137/367 (37%), Gaps = 64/367 (17%)

Query: 45  ALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQGEKLF------CCIPKDYQNELLY 98
           AL V + ++  R   P  + YS LL+ T K  G  Q   L        C P    + + Y
Sbjct: 179 ALAVFDDML-HRGCSPSVVTYSILLDATCKESGYKQAVVLLDEMRSKGCEP----DIVTY 233

Query: 99  NNLVIACLDKGVIKLSLEYMKKMRVLG---HSISY------------------------- 130
           N L+ A   +G +  +L+ +  +   G    +++Y                         
Sbjct: 234 NVLINAMCSQGDVGEALKVLNSLPSYGCKPDAVTYTPVLKSLCSSERWEEADKLLTKMFS 293

Query: 131 -------LVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILM----KIEANDH 179
                  + FN +I      G       +L QM      P + T+  +M    K    D 
Sbjct: 294 NDCAPDEVTFNAVITSLCQKGFVGRATKVLAQMSEHGCTPDIITYSSIMDGLCKERRVDE 353

Query: 180 NIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLD 239
            I+ L ++ ++M      P++V++  + T+     L+  A   V+ + +     + +T +
Sbjct: 354 AIKLLKELLAEMVSKNCIPDQVTFNTIITSLCQKGLFDRAIKVVDEMSEHGCIPDITTYN 413

Query: 240 VLIILYGYLAKGK------DLERIWATVQELPNVRSKSYVLAIEAFG--RIAQVSRAEEL 291
              I+ G+L K        DL  +  +    P+  +   +    AFG  R  ++ RA  +
Sbjct: 414 C--IVDGFLCKSCKTEEALDLLNLMVSNGLCPDTTTYKSL----AFGLSREDEMERAIGM 467

Query: 292 WLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFK 351
           +  +Q++        YN+++   CK    D A      M  NGC P+  TY  L  G   
Sbjct: 468 FRRVQAMGLSPDKMLYNAILLGLCKKWRTDLAIDFFAYMVSNGCMPDESTYIILVEGIAY 527

Query: 352 SNLVEEG 358
              +EE 
Sbjct: 528 EGFLEEA 534


>gi|18424537|ref|NP_568948.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75170898|sp|Q9FIT7.1|PP442_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g61990, mitochondrial; Flags: Precursor
 gi|10176917|dbj|BAB10161.1| unnamed protein product [Arabidopsis thaliana]
 gi|332010163|gb|AED97546.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 974

 Score = 84.7 bits (208), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 91/381 (23%), Positives = 164/381 (43%), Gaps = 20/381 (5%)

Query: 60  PKELDYSYLLEFTIKNHGISQGEKLFCCIPKDYQNELL----YNNLVIACLDKGVIKLSL 115
           P+   Y+ L+E   +   + QG +L   + K  +N ++    Y  +V      G +  + 
Sbjct: 380 PQAQAYASLIEGYCREKNVRQGYELLVEMKK--RNIVISPYTYGTVVKGMCSSGDLDGAY 437

Query: 116 EYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIE 175
             +K+M   G   + +++  LI       R      +L++MK   +AP +  ++ L+   
Sbjct: 438 NIVKEMIASGCRPNVVIYTTLIKTFLQNSRFGDAMRVLKEMKEQGIAPDIFCYNSLIIGL 497

Query: 176 ANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNW 235
           +    ++       +M  + ++PN  +Y    + +  A  +  A+ YV+ + +     N 
Sbjct: 498 SKAKRMDEARSFLVEMVENGLKPNAFTYGAFISGYIEASEFASADKYVKEMRECGVLPNK 557

Query: 236 STLDVLIILYGYLAKGKDLERIWA---TVQELPNVRSKSYVLAIEAFGRIAQVSRAEELW 292
                LI    Y  KGK +E   A    V +     +K+Y + +    +  +V  AEE++
Sbjct: 558 VLCTGLI--NEYCKKGKVIEACSAYRSMVDQGILGDAKTYTVLMNGLFKNDKVDDAEEIF 615

Query: 293 LEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKS 352
            EM+          Y  +I+ + K G + KAS +  EM   G  PN I Y  L  G  +S
Sbjct: 616 REMRGKGIAPDVFSYGVLINGFSKLGNMQKASSIFDEMVEEGLTPNVIIYNMLLGGFCRS 675

Query: 353 NLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANY 412
             +E   KA E    L+    V+   P   T  +II+ + + GD+  A  LF+E+K    
Sbjct: 676 GEIE---KAKE----LLDEMSVKGLHPNAVTYCTIIDGYCKSGDLAEAFRLFDEMKLKGL 728

Query: 413 TKYTFVYNTLIKAYVKAKIND 433
              +FVY TL+      ++ND
Sbjct: 729 VPDSFVYTTLVDGC--CRLND 747



 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 86/376 (22%), Positives = 160/376 (42%), Gaps = 29/376 (7%)

Query: 94  NELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNIL 153
           N ++Y  L+   L       ++  +K+M+  G +     +N LII  S   R     + L
Sbjct: 451 NVVIYTTLIKTFLQNSRFGDAMRVLKEMKEQGIAPDIFCYNSLIIGLSKAKRMDEARSFL 510

Query: 154 RQMKADKVAPHVSTFHILMK--IEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHA 211
            +M  + + P+  T+   +   IEA++       K   +M+   V PN+V    L   + 
Sbjct: 511 VEMVENGLKPNAFTYGAFISGYIEASE--FASADKYVKEMRECGVLPNKVLCTGLINEYC 568

Query: 212 V-ARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGK--DLERIWATVQE---LP 265
              ++      Y   +++ + G+  +     +++ G     K  D E I+  ++     P
Sbjct: 569 KKGKVIEACSAYRSMVDQGILGDAKT---YTVLMNGLFKNDKVDDAEEIFREMRGKGIAP 625

Query: 266 NVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASG 325
           +V S  Y + I  F ++  + +A  ++ EM           YN ++  +C++G I+KA  
Sbjct: 626 DVFS--YGVLINGFSKLGNMQKASSIFDEMVEEGLTPNVIIYNMLLGGFCRSGEIEKAKE 683

Query: 326 LLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTL 385
           LL EMS+ G  PNA+TY  +  G  KS  + E F       +L    K++   P      
Sbjct: 684 LLDEMSVKGLHPNAVTYCTIIDGYCKSGDLAEAF-------RLFDEMKLKGLVPDSFVYT 736

Query: 386 SIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKIND--PNLLRRMILG 443
           ++++      DV  A  +F   KK   +  T  +N LI    K    +    +L R++ G
Sbjct: 737 TLVDGCCRLNDVERAITIFGTNKKGCASS-TAPFNALINWVFKFGKTELKTEVLNRLMDG 795

Query: 444 G----ARPDAETYSLL 455
                 +P+  TY+++
Sbjct: 796 SFDRFGKPNDVTYNIM 811



 Score = 49.7 bits (117), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 58/225 (25%), Positives = 96/225 (42%), Gaps = 16/225 (7%)

Query: 237 TLDVLIILYGYLAKGKDLERIWATVQELPNV----RSKSYVLAIEAFGRIAQVSRAEELW 292
           T DVLI     L K K LE   + + E+ ++     + +Y L I+   +      A+ L 
Sbjct: 279 TYDVLI---DGLCKIKRLEDAKSLLVEMDSLGVSLDNHTYSLLIDGLLKGRNADAAKGLV 335

Query: 293 LEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKS 352
            EM S         Y+  I V  K G ++KA  L   M  +G  P A  Y  L  G  + 
Sbjct: 336 HEMVSHGINIKPYMYDCCICVMSKEGVMEKAKALFDGMIASGLIPQAQAYASLIEGYCRE 395

Query: 353 NLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANY 412
             V +G+       +L+   K R+      T  ++++     GD+  A N+ +E+  +  
Sbjct: 396 KNVRQGY-------ELLVEMKKRNIVISPYTYGTVVKGMCSSGDLDGAYNIVKEMIASGC 448

Query: 413 TKYTFVYNTLIKAYVK-AKINDP-NLLRRMILGGARPDAETYSLL 455
                +Y TLIK +++ ++  D   +L+ M   G  PD   Y+ L
Sbjct: 449 RPNVVIYTTLIKTFLQNSRFGDAMRVLKEMKEQGIAPDIFCYNSL 493



 Score = 40.4 bits (93), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 67/339 (19%), Positives = 138/339 (40%), Gaps = 47/339 (13%)

Query: 116 EYMKKMRVLGHSISYLVFNRLIILN--SSPGRRKTIPNILRQMKADKVAPHVSTFHILMK 173
           E  ++MR  G  I+  VF+  +++N  S  G  +   +I  +M  + + P+V  +++L+ 
Sbjct: 613 EIFREMR--GKGIAPDVFSYGVLINGFSKLGNMQKASSIFDEMVEEGLTPNVIIYNMLLG 670

Query: 174 IEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVA-------RLYT-------VA 219
                  IE   ++  +M    + PN V+YC +   +  +       RL+        V 
Sbjct: 671 GFCRSGEIEKAKELLDEMSVKGLHPNAVTYCTIIDGYCKSGDLAEAFRLFDEMKLKGLVP 730

Query: 220 ETYV-----------EALEKSMT--GNN----------WSTLDVLIILYGYLA-KGKDLE 255
           +++V             +E+++T  G N          ++ L   +  +G    K + L 
Sbjct: 731 DSFVYTTLVDGCCRLNDVERAITIFGTNKKGCASSTAPFNALINWVFKFGKTELKTEVLN 790

Query: 256 RIW-ATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVY 314
           R+   +          +Y + I+   +   +  A+EL+ +MQ+   +     Y S+++ Y
Sbjct: 791 RLMDGSFDRFGKPNDVTYNIMIDYLCKEGNLEAAKELFHQMQNANLMPTVITYTSLLNGY 850

Query: 315 CKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKV 374
            K G   +   +  E    G +P+ I Y  +     K  +     KAL L  ++     V
Sbjct: 851 DKMGRRAEMFPVFDEAIAAGIEPDHIMYSVIINAFLKEGMTT---KALVLVDQMFAKNAV 907

Query: 375 RSSTPW-LETTLSIIEIFAEKGDVGNAENLFEELKKANY 412
                  + T  +++  FA+ G++  AE + E + +  Y
Sbjct: 908 DDGCKLSISTCRALLSGFAKVGEMEVAEKVMENMVRLQY 946


>gi|297843788|ref|XP_002889775.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297335617|gb|EFH66034.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 598

 Score = 84.7 bits (208), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 82/370 (22%), Positives = 161/370 (43%), Gaps = 28/370 (7%)

Query: 98  YNNLVIACLDKGVIKLSLEYMKKM---RVLGHSISYLVFNRLIILNSSPGRRKTIPNILR 154
           YN ++ +  D G +K ++E + +M         I+Y +       +S  G+      +L 
Sbjct: 207 YNTILRSLCDSGKLKQAMEVLDRMLQRDCYPDVITYTILIEATCRDSGVGQAM---KLLD 263

Query: 155 QMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVAR 214
           +M+     P V T+++L+     +  ++  +K  +DM  S  +PN +++ I+  +     
Sbjct: 264 EMRDRGCTPDVVTYNVLVNGICKEGRLDEAIKFLNDMPSSGCQPNVITHNIILRSMCSTG 323

Query: 215 LYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELP----NVRSK 270
            +  AE  +  + +     +  T ++LI    +L +   L R    ++++P       S 
Sbjct: 324 RWMDAEKLLADMLRKGFSPSVVTFNILI---NFLCRKGLLGRAIDILEKMPKHGCQPNSL 380

Query: 271 SYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEM 330
           SY   +  F +  ++ RA E    M S         YN++++  CK+G ++ A  +L ++
Sbjct: 381 SYNPLLHGFCKEKKMDRAIEYLERMVSRGCYPDIVTYNTMLTALCKDGKVEDAVEILNQL 440

Query: 331 SMNGCKPNAITYRHLALGCFKSNLVEEGF-KALELG--MKLITTKKVRSSTPWLETTLSI 387
           S  GC P  ITY          N V +G  KA + G  +KL+   + +   P   T  S+
Sbjct: 441 SSKGCSPVLITY----------NTVIDGLAKAGKTGKAIKLLDEMRAKDLKPDTITYSSL 490

Query: 388 IEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKINDP--NLLRRMILGGA 445
           +   + +G V  A   F E ++         +N+++    K +  D   + L  MI  G 
Sbjct: 491 VGGLSREGKVDEAIKFFHEFERMGVRPNAVTFNSIMLGLCKTRQTDRAIDFLVYMINRGC 550

Query: 446 RPDAETYSLL 455
           +P   +Y++L
Sbjct: 551 KPTETSYTIL 560



 Score = 78.2 bits (191), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 85/373 (22%), Positives = 162/373 (43%), Gaps = 27/373 (7%)

Query: 96  LLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQ 155
           + YN ++      G I  +L  + +M V   S   + +N ++      G+ K    +L +
Sbjct: 173 ITYNVMISGYCKAGEINNALSVLDRMSV---SPDVVTYNTILRSLCDSGKLKQAMEVLDR 229

Query: 156 MKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARL 215
           M      P V T+ IL++    D  +   MK+  +M+     P+ V+Y +L         
Sbjct: 230 MLQRDCYPDVITYTILIEATCRDSGVGQAMKLLDEMRDRGCTPDVVTYNVLVNGICKEGR 289

Query: 216 YTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGK--DLERIWATVQE---LPNVRSK 270
              A  ++  +  S    N  T +  IIL    + G+  D E++ A +      P+V   
Sbjct: 290 LDEAIKFLNDMPSSGCQPNVITHN--IILRSMCSTGRWMDAEKLLADMLRKGFSPSV--V 345

Query: 271 SYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEM 330
           ++ + I    R   + RA ++  +M        +  YN ++  +CK   +D+A   L+ M
Sbjct: 346 TFNILINFLCRKGLLGRAIDILEKMPKHGCQPNSLSYNPLLHGFCKEKKMDRAIEYLERM 405

Query: 331 SMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEI 390
              GC P+ +TY  +     K   VE+   A+E+  +L +    +  +P L T  ++I+ 
Sbjct: 406 VSRGCYPDIVTYNTMLTALCKDGKVED---AVEILNQLSS----KGCSPVLITYNTVIDG 458

Query: 391 FAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVK-AKINDP----NLLRRMILGGA 445
            A+ G  G A  L +E++  +    T  Y++L+    +  K+++     +   RM   G 
Sbjct: 459 LAKAGKTGKAIKLLDEMRAKDLKPDTITYSSLVGGLSREGKVDEAIKFFHEFERM---GV 515

Query: 446 RPDAETYSLLKLA 458
           RP+A T++ + L 
Sbjct: 516 RPNAVTFNSIMLG 528



 Score = 59.3 bits (142), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 82/364 (22%), Positives = 143/364 (39%), Gaps = 50/364 (13%)

Query: 43  KRALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQGEKLF------CCIPKDYQNEL 96
           K+A+EV++ +++   Y P  + Y+ L+E T ++ G+ Q  KL        C P    + +
Sbjct: 221 KQAMEVLDRMLQRDCY-PDVITYTILIEATCRDSGVGQAMKLLDEMRDRGCTP----DVV 275

Query: 97  LYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQM 156
            YN LV     +G +  +++++  M   G   + +  N ++    S GR      +L  M
Sbjct: 276 TYNVLVNGICKEGRLDEAIKFLNDMPSSGCQPNVITHNIILRSMCSTGRWMDAEKLLADM 335

Query: 157 KADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLY 216
                +P V TF+IL+        +   + +   M +   +PN +SY  L       +  
Sbjct: 336 LRKGFSPSVVTFNILINFLCRKGLLGRAIDILEKMPKHGCQPNSLSYNPLLHGFCKEKKM 395

Query: 217 TVAETYVEALEKS------MTGNNWSTL--------DVLIILYGYLAKG----------- 251
             A  Y+E +         +T N   T         D + IL    +KG           
Sbjct: 396 DRAIEYLERMVSRGCYPDIVTYNTMLTALCKDGKVEDAVEILNQLSSKGCSPVLITYNTV 455

Query: 252 -KDLERIWAT---VQELPNVRSK-------SYVLAIEAFGRIAQVSRAEELWLEMQSVKQ 300
              L +   T   ++ L  +R+K       +Y   +    R  +V  A + + E + +  
Sbjct: 456 IDGLAKAGKTGKAIKLLDEMRAKDLKPDTITYSSLVGGLSREGKVDEAIKFFHEFERMGV 515

Query: 301 LKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFK 360
                 +NS++   CK    D+A   L  M   GCKP   +Y  L  G     + +E   
Sbjct: 516 RPNAVTFNSIMLGLCKTRQTDRAIDFLVYMINRGCKPTETSYTILIEGLAYEGMAKE--- 572

Query: 361 ALEL 364
           ALEL
Sbjct: 573 ALEL 576



 Score = 55.5 bits (132), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 44/182 (24%), Positives = 82/182 (45%), Gaps = 12/182 (6%)

Query: 276 IEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGC 335
           I  F R+ +  +A ++   ++    +     YN +IS YCK G I+ A  +L  MS++  
Sbjct: 144 IRGFCRMGKTRKAAKILEVLEGSGAVPDVITYNVMISGYCKAGEINNALSVLDRMSVS-- 201

Query: 336 KPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKG 395
            P+ +TY  +       +L + G   L+  M+++     R   P + T   +IE      
Sbjct: 202 -PDVVTYNTIL-----RSLCDSG--KLKQAMEVLDRMLQRDCYPDVITYTILIEATCRDS 253

Query: 396 DVGNAENLFEELKKANYTKYTFVYNTLIKAYVK-AKINDP-NLLRRMILGGARPDAETYS 453
            VG A  L +E++    T     YN L+    K  ++++    L  M   G +P+  T++
Sbjct: 254 GVGQAMKLLDEMRDRGCTPDVVTYNVLVNGICKEGRLDEAIKFLNDMPSSGCQPNVITHN 313

Query: 454 LL 455
           ++
Sbjct: 314 II 315


>gi|222636130|gb|EEE66262.1| hypothetical protein OsJ_22447 [Oryza sativa Japonica Group]
          Length = 876

 Score = 84.7 bits (208), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 99/414 (23%), Positives = 167/414 (40%), Gaps = 57/414 (13%)

Query: 93  QNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNI 152
           +NE  Y  L+    D   ++ +L     M+  G S +   F  LI      GR      +
Sbjct: 136 RNEYSYTILIQGLCDAKCVRKALVLFLMMKRDGCSPNVRAFTFLISGLCKSGRVGDARLL 195

Query: 153 LRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAV 212
              M  + V P V T++ ++   +    +   +K+   M+++   P++ +Y  L      
Sbjct: 196 FDAMPQNGVVPSVMTYNAMIVGYSKLGRMNDALKIKELMEKNGCHPDDWTYNTL------ 249

Query: 213 ARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPN-VRSKS 271
             +Y + +   E  E+ +           ++ +  L  G  +   +     + N + S  
Sbjct: 250 --IYGLCDQKTEEAEELLNNAVKEGFTPTVVTFTNLINGYCMAEKFDDALRMKNKMMSSK 307

Query: 272 YVLAIEAFGRI-------AQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKAS 324
             L ++ FG++        ++  A+EL  E+ +   +     Y S+I  YCK+G +D A 
Sbjct: 308 CKLDLQVFGKLINSLIKKDRLKEAKELLNEISANGLVPNVITYTSIIDGYCKSGKVDIAL 367

Query: 325 GLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETT 384
            +LK M  +GC+PNA TY  L  G  K        K L   M L+T  +     P + T 
Sbjct: 368 EVLKMMERDGCQPNAWTYNSLMYGLVKD-------KKLHKAMALLTKMQKDGIIPNVITY 420

Query: 385 LSIIEIFAEKGDVGNAENLFE-------------------ELKKANYTK--YTFV----- 418
            ++++   ++ D  NA  LFE                    L KA   +  Y+F+     
Sbjct: 421 TTLLQGQCDEHDFDNAFRLFEMMEQNGLKPDEHAYAVLTDALCKAGRAEEAYSFIVRKGV 480

Query: 419 ------YNTLIKAYVKAKIND--PNLLRRMILGGARPDAETYSLLKLAEQFQKK 464
                 Y TLI  + KA   D    L+ RMI  G  PD+ TYS+L  A   QK+
Sbjct: 481 ALTKVYYTTLIDGFSKAGNTDFAATLIERMIDEGCTPDSYTYSVLLHALCKQKR 534



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 86/418 (20%), Positives = 167/418 (39%), Gaps = 68/418 (16%)

Query: 94  NELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNIL 153
           N + Y +++      G + ++LE +K M   G   +   +N L+       +      +L
Sbjct: 346 NVITYTSIIDGYCKSGKVDIALEVLKMMERDGCQPNAWTYNSLMYGLVKDKKLHKAMALL 405

Query: 154 RQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATA---- 209
            +M+ D + P+V T+  L++ + ++H+ +   +++  M+++ ++P+E +Y +L  A    
Sbjct: 406 TKMQKDGIIPNVITYTTLLQGQCDEHDFDNAFRLFEMMEQNGLKPDEHAYAVLTDALCKA 465

Query: 210 ------------HAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGY---------- 247
                         VA       T ++   K+   +  +TL   +I  G           
Sbjct: 466 GRAEEAYSFIVRKGVALTKVYYTTLIDGFSKAGNTDFAATLIERMIDEGCTPDSYTYSVL 525

Query: 248 ---LAKGKDLERIWATVQE--LPNVRSK--SYVLAIEAFGRIAQVSRAEELWLEMQSVKQ 300
              L K K L      + +  L  ++    +Y + I+   R  +   A+ ++ EM S   
Sbjct: 526 LHALCKQKRLNEALPILDQMSLRGIKCTIFAYTILIDEMLREGKHDHAKRMYNEMTSSGH 585

Query: 301 LKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFK 360
             +   Y   I+ YCK G ++ A  L+ +M   G  P+ +TY  L  GC     ++  F 
Sbjct: 586 KPSATTYTVFINSYCKEGRLEDAEDLILKMEREGVAPDVVTYNILIDGCGHMGYIDRAFS 645

Query: 361 ALE---------------------LGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGN 399
            L+                     L   L   + V +S  W     ++IE+     D+  
Sbjct: 646 TLKRMVGASCEPNYWTYCLLLKHLLKGNLAYVRSVDTSGMW-----NLIEL-----DI-- 693

Query: 400 AENLFEELKKANYTKYTFVYNTLIKAYVKA-KINDPNLLRRMILG-GARPDAETYSLL 455
              L E + K         Y++LI  + KA ++ +  LL   + G G  P+ + Y+LL
Sbjct: 694 TWQLLERMVKHGLNPTVTTYSSLIAGFCKAGRLEEACLLLDHMCGKGLSPNEDIYTLL 751



 Score = 51.6 bits (122), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 64/288 (22%), Positives = 114/288 (39%), Gaps = 15/288 (5%)

Query: 153 LRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAV 212
           +R+  + ++A     ++  ++  A     E + +VYS + +  + P+ V+Y  +  ++  
Sbjct: 21  IRRTGSARLALSPKCYNFALRSLARFDMTEYMGRVYSQLVQDGLLPDTVTYNTMIKSYCK 80

Query: 213 ARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSK-- 270
               T A  Y   L +        T + L++  GY   G+  +  W  +  +P +  +  
Sbjct: 81  EGDLTTAHRYFRLLLEGGLEPETFTCNALVL--GYCRTGELRKACWLFLM-MPLMGCQRN 137

Query: 271 --SYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLK 328
             SY + I+       V +A  L+L M+          +  +IS  CK+G +  A  L  
Sbjct: 138 EYSYTILIQGLCDAKCVRKALVLFLMMKRDGCSPNVRAFTFLISGLCKSGRVGDARLLFD 197

Query: 329 EMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSII 388
            M  NG  P+ +TY  + +G  K   + +  K  EL       K       W   TL I 
Sbjct: 198 AMPQNGVVPSVMTYNAMIVGYSKLGRMNDALKIKEL-----MEKNGCHPDDWTYNTL-IY 251

Query: 389 EIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKINDPNL 436
            +  +K +   AE L     K  +T     +  LI  Y  A+  D  L
Sbjct: 252 GLCDQKTE--EAEELLNNAVKEGFTPTVVTFTNLINGYCMAEKFDDAL 297



 Score = 51.6 bits (122), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 41/150 (27%), Positives = 68/150 (45%), Gaps = 9/150 (6%)

Query: 308 NSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMK 367
           N+++  YC+ G + KA  L   M + GC+ N  +Y  L  G   +  V    KAL L + 
Sbjct: 107 NALVLGYCRTGELRKACWLFLMMPLMGCQRNEYSYTILIQGLCDAKCVR---KALVLFLM 163

Query: 368 LITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYV 427
           +    K    +P +     +I    + G VG+A  LF+ + +         YN +I  Y 
Sbjct: 164 M----KRDGCSPNVRAFTFLISGLCKSGRVGDARLLFDAMPQNGVVPSVMTYNAMIVGYS 219

Query: 428 K-AKINDPNLLRRMI-LGGARPDAETYSLL 455
           K  ++ND   ++ ++   G  PD  TY+ L
Sbjct: 220 KLGRMNDALKIKELMEKNGCHPDDWTYNTL 249



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 60/302 (19%), Positives = 120/302 (39%), Gaps = 30/302 (9%)

Query: 152 ILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHA 211
           IL QM    +   +  + IL+     +   +   ++Y++M  S  +P+  +Y +   ++ 
Sbjct: 541 ILDQMSLRGIKCTIFAYTILIDEMLREGKHDHAKRMYNEMTSSGHKPSATTYTVFINSYC 600

Query: 212 VARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQEL------P 265
                  AE  +  +E+     +  T ++LI   G++     ++R ++T++ +      P
Sbjct: 601 KEGRLEDAEDLILKMEREGVAPDVVTYNILIDGCGHMGY---IDRAFSTLKRMVGASCEP 657

Query: 266 NVRSKSYVLAIEAFGRIAQVSRAEE--LW--LEMQSVKQL----------KATEQYNSVI 311
           N  +   +L     G +A V   +   +W  +E+    QL               Y+S+I
Sbjct: 658 NYWTYCLLLKHLLKGNLAYVRSVDTSGMWNLIELDITWQLLERMVKHGLNPTVTTYSSLI 717

Query: 312 SVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITT 371
           + +CK G +++A  LL  M   G  PN   Y  L   C  +   E+        +  ++ 
Sbjct: 718 AGFCKAGRLEEACLLLDHMCGKGLSPNEDIYTLLIKCCCDTKFFEK-------ALSFVSI 770

Query: 372 KKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKI 431
                  P LE+   ++     +GD    ++LF +L +  Y      +  L    +KA  
Sbjct: 771 MSECGFQPQLESYRLLVVGLCNEGDFEKVKSLFCDLLELGYNHDEVAWKILNDGLLKAGY 830

Query: 432 ND 433
            D
Sbjct: 831 VD 832


>gi|115466932|ref|NP_001057065.1| Os06g0199100 [Oryza sativa Japonica Group]
 gi|51091829|dbj|BAD36643.1| putative PPR protein [Oryza sativa Japonica Group]
 gi|113595105|dbj|BAF18979.1| Os06g0199100 [Oryza sativa Japonica Group]
          Length = 1283

 Score = 84.7 bits (208), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 78/341 (22%), Positives = 149/341 (43%), Gaps = 24/341 (7%)

Query: 126 HSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEG-- 183
           H  +  VFN ++ + +  GR      +L  M+   + P + +F+ L+   A    +    
Sbjct: 57  HLPTVQVFNAMMGVYARSGRFDDARQLLDAMRDQDIEPDLVSFNTLINARAKSGCLAAGV 116

Query: 184 LMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLII 243
            +++  +++++ + P+ ++Y  L +A +       A    E +  S    +  T + ++ 
Sbjct: 117 ALELLHEVRQAGLRPDAITYNTLISACSQGSNLDDAVAVFEEMIASECRPDLWTYNAMVS 176

Query: 244 LYGYLAKGKDLERIWATVQE---LPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQ 300
           ++G   K ++ E ++  + E    P+  + +Y   + AF +   V R E +  E+     
Sbjct: 177 VHGRCGKAQEAELMFKELVEKGFQPD--AVTYNSLLYAFAKEGDVERVERVCEELVKAGF 234

Query: 301 LKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFK 360
            K    YN++I +Y K G +D A GL  EM   GC P+A+TY  L     K + + E  K
Sbjct: 235 RKDGITYNTMIHMYGKMGRLDLALGLYDEMRAIGCTPDAVTYTVLVDSLGKMDRISEAGK 294

Query: 361 ALE----LGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYT 416
            LE     G+K           P L T  ++I  +A+ G   +AE  F+ + ++      
Sbjct: 295 VLEEMADAGLK-----------PTLVTFSALICAYAKSGRQDDAERTFDRMVESGVKPDR 343

Query: 417 FVYNTLIKAYVKAKINDP--NLLRRMILGGARPDAETYSLL 455
             Y  ++  + ++        L R MI  G +PD   Y +L
Sbjct: 344 LAYLVMLDVFARSDETRKLMVLYRAMIKDGYKPDDGLYQVL 384



 Score = 43.5 bits (101), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 59/315 (18%), Positives = 127/315 (40%), Gaps = 14/315 (4%)

Query: 144 GRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSY 203
           GR   +  ++++++   +    ST  ++++  A   ++  +MK+Y+ MK +   PN   Y
Sbjct: 671 GRLDELYVVVQELQDLDIKISKSTVLLMLEAFAKAGDVFEVMKIYNGMKAAGYLPNMHLY 730

Query: 204 CILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQE 263
            I+ +     + +   E  V  +E +    +   L+ L+++Y           ++ ++ E
Sbjct: 731 RIMISLLCHNKRFRDVELMVAEMEGAGFKPDLVVLNTLLLMYTGTGNFDRTIEVYHSILE 790

Query: 264 L---PNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFI 320
               P+    +Y   I  + R  +      L  EM         E Y  +++   K    
Sbjct: 791 AGLEPD--EDTYNTLIVMYSRNFRPEEGFTLLYEMGKRGLTPKLESYKILLAASGKAKLW 848

Query: 321 DKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPW 380
           ++A  L +EM   G + N   Y H+ +  +++       +       L++  K     P 
Sbjct: 849 EQADLLFEEMRTKGYRLNRSIY-HMMMKIYRNA------RNHSKAEHLLSAMKEDGIEPT 901

Query: 381 LETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKINDPNL--LR 438
           + T   ++  +   G    AE +   LK +N    T  Y+T++ AY++ +     +  L 
Sbjct: 902 IATMHILMTSYGTSGHPDEAEKVLNSLKSSNLEISTLPYSTVLDAYLRNRDYSLGITKLL 961

Query: 439 RMILGGARPDAETYS 453
            M   G  PD + ++
Sbjct: 962 EMKRDGVEPDHQVWT 976



 Score = 42.4 bits (98), Expect = 0.56,   Method: Compositional matrix adjust.
 Identities = 47/225 (20%), Positives = 98/225 (43%), Gaps = 9/225 (4%)

Query: 47  EVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQGEKLFCCIPKD--YQNELLYNNLVIA 104
           E+M   + E+ ++P  + Y+ LL    K   + + E++   + K    ++ + YN ++  
Sbjct: 188 ELMFKELVEKGFQPDAVTYNSLLYAFAKEGDVERVERVCEELVKAGFRKDGITYNTMIHM 247

Query: 105 CLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPH 164
               G + L+L    +MR +G +   + +  L+       R      +L +M    + P 
Sbjct: 248 YGKMGRLDLALGLYDEMRAIGCTPDAVTYTVLVDSLGKMDRISEAGKVLEEMADAGLKPT 307

Query: 165 VSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETY-V 223
           + TF  L+   A     +   + +  M  S V+P+ ++Y ++    A +      ET  +
Sbjct: 308 LVTFSALICAYAKSGRQDDAERTFDRMVESGVKPDRLAYLVMLDVFARSD-----ETRKL 362

Query: 224 EALEKSMTGNNWSTLDVLI-ILYGYLAKGKDLERIWATVQELPNV 267
             L ++M  + +   D L  +L   LAKG + + I   +Q++  V
Sbjct: 363 MVLYRAMIKDGYKPDDGLYQVLLAALAKGNEHDEIEGVIQDMEAV 407



 Score = 39.3 bits (90), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 23/103 (22%), Positives = 51/103 (49%)

Query: 119 KKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEAND 178
           ++MR  G+ ++  +++ ++ +  +        ++L  MK D + P ++T HILM      
Sbjct: 856 EEMRTKGYRLNRSIYHMMMKIYRNARNHSKAEHLLSAMKEDGIEPTIATMHILMTSYGTS 915

Query: 179 HNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAET 221
            + +   KV + +K S +E + + Y  +  A+   R Y++  T
Sbjct: 916 GHPDEAEKVLNSLKSSNLEISTLPYSTVLDAYLRNRDYSLGIT 958


>gi|115471383|ref|NP_001059290.1| Os07g0249100 [Oryza sativa Japonica Group]
 gi|33146978|dbj|BAC80051.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|50508482|dbj|BAD30659.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|113610826|dbj|BAF21204.1| Os07g0249100 [Oryza sativa Japonica Group]
 gi|215767773|dbj|BAH00002.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 882

 Score = 84.7 bits (208), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 73/340 (21%), Positives = 155/340 (45%), Gaps = 15/340 (4%)

Query: 114 SLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMK 173
           +LE +++M+ +G+ +   +F  L+   +  G+      ++ ++K   + P +  +++ + 
Sbjct: 198 ALELLRQMQEVGYEVGVHLFTTLVRALAREGQVADALALVDEVKGSCLEPDIVLYNVCID 257

Query: 174 IEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGN 233
                 N++   K + ++K   ++P++VSY  +      A     AE     +E   +  
Sbjct: 258 CFGKAGNVDMAWKFFHELKAQGLKPDDVSYTSMIWVLCKAGRLGEAEELFAQMEAERSVP 317

Query: 234 NWSTLDVLIILYGYLAKGKDLERIWATVQE---LPNVRSKSYVLAIEAFGRIAQVSRAEE 290
                + +I+ YG   + +D  ++   ++E   +P+V S + +L     G+  +V  A  
Sbjct: 318 CAYAYNTMIMGYGSAGRFEDAYKLLERLRERGCIPSVVSFNSILT--CLGKKRKVDEALS 375

Query: 291 LWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCF 350
           L+  M+   +  ++  YN +I + C  G +++A  +L EM      PN +T   +     
Sbjct: 376 LFEVMKKDAEPNSS-TYNIIIDMLCLGGRVEEAYRILDEMEHASLFPNLLTVNIMVDRLC 434

Query: 351 KSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKA 410
           K+  +EE +K  E       +   R   P   T  S+I+   +KG V  A  LFE++  A
Sbjct: 435 KARKLEEAYKIFE-------SASQRGCNPDCVTYCSLIDGLGKKGQVDEAYRLFEKMLDA 487

Query: 411 NYTKYTFVYNTLIKA-YVKAKINDPN-LLRRMILGGARPD 448
            +     VY +LI+  ++  +  D + + + +I  G +PD
Sbjct: 488 GHNANPVVYTSLIRNFFIHGRKEDGHKIFKELIRRGCKPD 527



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 99/488 (20%), Positives = 190/488 (38%), Gaps = 103/488 (21%)

Query: 53  IRERPYRPKELDYSYLLEFTIKNHGISQGEKLFC------CIPKDYQNELLYNNLVIACL 106
           ++ +  +P ++ Y+ ++    K   + + E+LF        +P  Y     YN +++   
Sbjct: 275 LKAQGLKPDDVSYTSMIWVLCKAGRLGEAEELFAQMEAERSVPCAYA----YNTMIMGYG 330

Query: 107 DKGVIKLSLEYMKKMRVLGHSISYLVFNRLIIL-----------------------NSSP 143
             G  + + + ++++R  G   S + FN ++                         NSS 
Sbjct: 331 SAGRFEDAYKLLERLRERGCIPSVVSFNSILTCLGKKRKVDEALSLFEVMKKDAEPNSST 390

Query: 144 -----------GRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMK 192
                      GR +    IL +M+   + P++ T +I++        +E   K++    
Sbjct: 391 YNIIIDMLCLGGRVEEAYRILDEMEHASLFPNLLTVNIMVDRLCKARKLEEAYKIFESAS 450

Query: 193 RSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSM-TGNNWSTLDVLIILYGYLAKG 251
           +    P+ V+YC L     + +   V E Y    EK +  G+N + +    ++  +   G
Sbjct: 451 QRGCNPDCVTYCSLI--DGLGKKGQVDEAY-RLFEKMLDAGHNANPVVYTSLIRNFFIHG 507

Query: 252 ---------KDLER----------------------------IWATVQE---LPNVRSKS 271
                    K+L R                            I+  ++    LP+VRS  
Sbjct: 508 RKEDGHKIFKELIRRGCKPDLTLLNTYMDCVFKAGEVEKGRMIFEDIRSYGFLPDVRS-- 565

Query: 272 YVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMS 331
           Y + I    +  Q      ++  M+          YN+V+  +CK+G + KA  +L+EM 
Sbjct: 566 YSILIHGLTKAGQARETSNIFHAMKQQGFALDARAYNAVVDGFCKSGKVHKAYEILEEMK 625

Query: 332 MNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTL--SIIE 389
               +P   TY  +  G  K + ++E +   E         + +S    L   L  S+I+
Sbjct: 626 EKCVQPTVATYGAIVDGLAKIDRLDEAYMLFE---------EAKSKGIELNVVLYSSLID 676

Query: 390 IFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKA-KINDPNL-LRRMILGGARP 447
            F + G +  A  + EE+ K   T   + +N+L+ A VKA +IN+  +  + M      P
Sbjct: 677 GFGKVGRIDEAYLILEEMMKKGLTPNVYTWNSLLDALVKAEEINEALVCFQSMKEMKCPP 736

Query: 448 DAETYSLL 455
           +  TYS+L
Sbjct: 737 NTYTYSIL 744



 Score = 56.6 bits (135), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 59/276 (21%), Positives = 113/276 (40%), Gaps = 19/276 (6%)

Query: 98  YNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMK 157
           Y+ L+      G  + +      M+  G ++    +N ++      G+      IL +MK
Sbjct: 566 YSILIHGLTKAGQARETSNIFHAMKQQGFALDARAYNAVVDGFCKSGKVHKAYEILEEMK 625

Query: 158 ADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYT 217
              V P V+T+  ++   A    ++    ++ + K   +E N V Y  L       ++  
Sbjct: 626 EKCVQPTVATYGAIVDGLAKIDRLDEAYMLFEEAKSKGIELNVVLYSSLI--DGFGKVGR 683

Query: 218 VAETYV---EALEKSMTGN--NW-STLDVLIILYGYLAKGKDLERIWATVQELPNVR--- 268
           + E Y+   E ++K +T N   W S LD L+       K +++       Q +  ++   
Sbjct: 684 IDEAYLILEEMMKKGLTPNVYTWNSLLDALV-------KAEEINEALVCFQSMKEMKCPP 736

Query: 269 -SKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLL 327
            + +Y + I    R+ + ++A   W +MQ    +     Y ++IS   K G I  A  L 
Sbjct: 737 NTYTYSILINGLCRVQKYNKAFVFWQDMQKQGLVPNVVTYTTMISGLAKVGNITDAYSLF 796

Query: 328 KEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALE 363
           +    NG  P+A ++  L  G   +N   E ++  E
Sbjct: 797 ERFKANGGIPDAASFNALIEGMSNANRAMEAYQVFE 832



 Score = 55.5 bits (132), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 75/356 (21%), Positives = 136/356 (38%), Gaps = 57/356 (16%)

Query: 106 LDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHV 165
           LD  V+ +++     MR L    ++  +  LI   +   R +    +LRQM+       V
Sbjct: 160 LDDAVLAVAV-----MRRLKFRPAFSAYTVLIGALAEARRPERALELLRQMQEVGYEVGV 214

Query: 166 STFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEA 225
             F  L++  A +  +   + +  ++K S +EP+ V Y                      
Sbjct: 215 HLFTTLVRALAREGQVADALALVDEVKGSCLEPDIVLY---------------------- 252

Query: 226 LEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSK----SYVLAIEAFGR 281
                        +V I  +G   K  +++  W    EL     K    SY   I    +
Sbjct: 253 -------------NVCIDCFG---KAGNVDMAWKFFHELKAQGLKPDDVSYTSMIWVLCK 296

Query: 282 IAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAIT 341
             ++  AEEL+ +M++ + +     YN++I  Y   G  + A  LL+ +   GC P+ ++
Sbjct: 297 AGRLGEAEELFAQMEAERSVPCAYAYNTMIMGYGSAGRFEDAYKLLERLRERGCIPSVVS 356

Query: 342 YRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAE 401
           +  +     K   V+E     E+ MK       + + P   T   II++    G V  A 
Sbjct: 357 FNSILTCLGKKRKVDEALSLFEV-MK-------KDAEPNSSTYNIIIDMLCLGGRVEEAY 408

Query: 402 NLFEELKKANYTKYTFVYNTLIKAYVKA-KINDP-NLLRRMILGGARPDAETYSLL 455
            + +E++ A+        N ++    KA K+ +   +       G  PD  TY  L
Sbjct: 409 RILDEMEHASLFPNLLTVNIMVDRLCKARKLEEAYKIFESASQRGCNPDCVTYCSL 464


>gi|449455685|ref|XP_004145582.1| PREDICTED: pentatricopeptide repeat-containing protein At4g31850,
           chloroplastic-like [Cucumis sativus]
          Length = 1113

 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 85/367 (23%), Positives = 157/367 (42%), Gaps = 26/367 (7%)

Query: 98  YNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMK 157
           Y  L+ A  + G ++ + E   KM+  GH    +++  L+   +  G   T      QM+
Sbjct: 300 YTVLIDALCNAGQLENAKELFVKMKANGHKPDQVIYITLLDKFNDFGDLDTFKEFWSQME 359

Query: 158 ADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYT 217
           AD   P V TF IL+ +     + +     +  M++  + PN  +Y  L      A    
Sbjct: 360 ADGYMPDVVTFTILVDVLCKARDFDEAFATFDVMRKQGILPNLHTYNTLICGLLRAGRIE 419

Query: 218 VAETYVEALEKSMTGNNWSTLDVLIILYGYLAK-GKDLERIWATVQE--LPN-VRSKSYV 273
            A   +  +E         T ++ I  +G   + GK +E       +  +PN V   + +
Sbjct: 420 DALKLLGTMESVGVQPTAYTYNIFIDYFGKSGETGKAVETFEKMKAKGIVPNIVACNASL 479

Query: 274 LAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMN 333
            ++   GR+ +   A+ ++  ++       +  YN ++  Y K G +D+A  LL EM  N
Sbjct: 480 YSLAEMGRLRE---AKTMFNGLRENGLAPDSVTYNMMMKCYSKVGQVDEAVNLLSEMIRN 536

Query: 334 GCKPNAITYRHLALGCFKSNLVEEGFKALEL--GMKLITTKKVRSSTPWLETTLSIIEIF 391
           GC+P+ I    L    +K+  V+E ++  +    MKL         +P + T  +++   
Sbjct: 537 GCEPDVIVVNSLIDSLYKAGRVDEAWQMFDRMKDMKL---------SPTVVTYNTLLSGL 587

Query: 392 AEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKINDP-----NLLRRMILGGAR 446
            ++G V  A  LFE + +   +  T  +NTL+  + K   ND       +  +M +   +
Sbjct: 588 GKEGRVQKAIELFESMIEKKCSPNTISFNTLLDCFCK---NDEVELALKMFSKMTVMDCK 644

Query: 447 PDAETYS 453
           PD  TY+
Sbjct: 645 PDVLTYN 651



 Score = 78.6 bits (192), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 75/313 (23%), Positives = 131/313 (41%), Gaps = 20/313 (6%)

Query: 151  NILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAH 210
            ++ + MK    AP   TF++L+ +      I  L ++Y +M     +P+ ++Y I+ ++ 
Sbjct: 809  DLFKDMKNVGCAPDAFTFNMLLAVHGKSGKITELFELYKEMISRRCKPDAITYNIVISSL 868

Query: 211  AVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSK 270
            A +     A  +   L  S       T   LI     LAK   LE      +E+ +   K
Sbjct: 869  AKSNNLDKALDFFYDLVSSDFRPTPRTYGPLI---DGLAKVGRLEEAMRLFEEMSDYGCK 925

Query: 271  S----YVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGL 326
                 + + I  +G+I     A +L+  M +       + Y  ++   C  G +D+A   
Sbjct: 926  PNCAIFNILINGYGKIGDTETACQLFKRMVNEGIRPDLKSYTILVDCLCLAGRVDEALYY 985

Query: 327  LKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLS 386
              E+   G  P+ I Y  +  G  KS  +EE        + L    + R   P L T  S
Sbjct: 986  FNELKSTGLDPDFIAYNRIINGLGKSQRMEEA-------LALYNEMRNRGIVPDLYTYNS 1038

Query: 387  IIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKINDP----NLLRRMIL 442
            ++      G V  A+ ++EEL+ A      F YN LI+ Y  ++  +P     + + M++
Sbjct: 1039 LMLNLGLAGMVEQAKRMYEELQLAGLEPDVFTYNALIRGYSLSE--NPEHAYTVYKNMMV 1096

Query: 443  GGARPDAETYSLL 455
             G  P+  TY+ L
Sbjct: 1097 DGCNPNIGTYAQL 1109



 Score = 71.6 bits (174), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 81/376 (21%), Positives = 143/376 (38%), Gaps = 39/376 (10%)

Query: 108 KGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVST 167
           +G ++     + KMR  G  ++   +N LI L    G       + R+M ++ + P + T
Sbjct: 170 RGGLRQMTTVLNKMRKAGFVLNAYSYNGLIHLLIQSGFCGEALEVYRRMVSEGLKPSLKT 229

Query: 168 FHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETY--VEA 225
           +  LM       + E +M +  +M+   + PN  ++ I      + R   + E Y     
Sbjct: 230 YSALMVALGKKRDSEMVMVLLKEMEDLGLRPNVYTFTI--CIRVLGRAGKIDEAYEIFRR 287

Query: 226 LEKSMTGNNWSTLDVLIILY---GYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRI 282
           ++    G +  T  VLI      G L   K+L          P+     Y+  ++ F   
Sbjct: 288 MDDEGCGPDLVTYTVLIDALCNAGQLENAKELFVKMKANGHKPD--QVIYITLLDKFNDF 345

Query: 283 AQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITY 342
             +   +E W +M++   +     +  ++ V CK    D+A      M   G  PN  TY
Sbjct: 346 GDLDTFKEFWSQMEADGYMPDVVTFTILVDVLCKARDFDEAFATFDVMRKQGILPNLHTY 405

Query: 343 RHLALGCFKSNLVEEGFKAL--------------------------ELGMKLITTKKVRS 376
             L  G  ++  +E+  K L                          E G  + T +K+++
Sbjct: 406 NTLICGLLRAGRIEDALKLLGTMESVGVQPTAYTYNIFIDYFGKSGETGKAVETFEKMKA 465

Query: 377 S--TPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKINDP 434
               P +    + +   AE G +  A+ +F  L++      +  YN ++K Y K    D 
Sbjct: 466 KGIVPNIVACNASLYSLAEMGRLREAKTMFNGLRENGLAPDSVTYNMMMKCYSKVGQVDE 525

Query: 435 --NLLRRMILGGARPD 448
             NLL  MI  G  PD
Sbjct: 526 AVNLLSEMIRNGCEPD 541



 Score = 68.9 bits (167), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 63/310 (20%), Positives = 131/310 (42%), Gaps = 13/310 (4%)

Query: 58  YRPKELDYSYLLEFTIKNHGISQGEKLFCCIPKD--YQNELLYNNLVIACLDKGVIKLSL 115
           Y P  + ++ L++   K     +    F  + K     N   YN L+   L  G I+ +L
Sbjct: 363 YMPDVVTFTILVDVLCKARDFDEAFATFDVMRKQGILPNLHTYNTLICGLLRAGRIEDAL 422

Query: 116 EYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIE 175
           + +  M  +G   +   +N  I      G          +MKA  + P++   +  +   
Sbjct: 423 KLLGTMESVGVQPTAYTYNIFIDYFGKSGETGKAVETFEKMKAKGIVPNIVACNASLYSL 482

Query: 176 ANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNW 235
           A    +     +++ ++ + + P+ V+Y ++   ++  ++  V E  V  L + +   N 
Sbjct: 483 AEMGRLREAKTMFNGLRENGLAPDSVTYNMMMKCYS--KVGQVDEA-VNLLSEMI--RNG 537

Query: 236 STLDVLII--LYGYLAKGKDLERIWATVQELPNVRSKSYVLA----IEAFGRIAQVSRAE 289
              DV+++  L   L K   ++  W     + +++    V+     +   G+  +V +A 
Sbjct: 538 CEPDVIVVNSLIDSLYKAGRVDEAWQMFDRMKDMKLSPTVVTYNTLLSGLGKEGRVQKAI 597

Query: 290 ELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGC 349
           EL+  M   K    T  +N+++  +CKN  ++ A  +  +M++  CKP+ +TY  +  G 
Sbjct: 598 ELFESMIEKKCSPNTISFNTLLDCFCKNDEVELALKMFSKMTVMDCKPDVLTYNTVIYGL 657

Query: 350 FKSNLVEEGF 359
            K N V   F
Sbjct: 658 IKENKVNHAF 667



 Score = 68.2 bits (165), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 56/189 (29%), Positives = 91/189 (48%), Gaps = 13/189 (6%)

Query: 271 SYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEM 330
           SY   I     +    +A +L+ +M++V        +N +++V+ K+G I +   L KEM
Sbjct: 790 SYNCLIGELLEVHYTEKAWDLFKDMKNVGCAPDAFTFNMLLAVHGKSGKITELFELYKEM 849

Query: 331 SMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEI 390
               CKP+AITY  +     KSN ++   KAL+    L+++       P   T   +I+ 
Sbjct: 850 ISRRCKPDAITYNIVISSLAKSNNLD---KALDFFYDLVSS----DFRPTPRTYGPLIDG 902

Query: 391 FAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKINDP----NLLRRMILGGAR 446
            A+ G +  A  LFEE+          ++N LI  Y   KI D      L +RM+  G R
Sbjct: 903 LAKVGRLEEAMRLFEEMSDYGCKPNCAIFNILINGY--GKIGDTETACQLFKRMVNEGIR 960

Query: 447 PDAETYSLL 455
           PD ++Y++L
Sbjct: 961 PDLKSYTIL 969


>gi|346703131|emb|CBX25230.1| hypothetical_protein [Oryza brachyantha]
          Length = 746

 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 76/304 (25%), Positives = 132/304 (43%), Gaps = 12/304 (3%)

Query: 123 VLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIE 182
           + G     +V+N L+ +     + K +  +  +M    + P V TF+ LMK     H + 
Sbjct: 143 LFGIQADTVVYNHLLNVLVEGSKMKLLETVYSEMGERGIKPDVVTFNTLMKALCRAHQVR 202

Query: 183 GLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLI 242
             + +  +M  S V P+E ++  L     V      A   V+A    M G + + + V +
Sbjct: 203 TAVLMLEEMSSSGVAPDETTFTTLMQGF-VEEGSIKAALRVKARMLEM-GCSPTKVTVNV 260

Query: 243 ILYGYLAKGKDLERIWATVQELPN---VRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVK 299
           ++ GY   G+  + +    QE+ N       +Y   +    +   V  A ++   M    
Sbjct: 261 LINGYCKLGRVEDALGYIQQEIANGFEPDQITYNTFVNGLCQNGHVGHALKVMDVMVQEG 320

Query: 300 QLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGF 359
                  YN V++  CKNG +++A G+L +M   GC P+  T+  L +     N +EE  
Sbjct: 321 HDPDVFTYNIVVNCLCKNGQLEEAKGILNQMVERGCLPDITTFNTLIVALCSGNRLEE-- 378

Query: 360 KALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVY 419
            AL+L  ++     ++  +P + T   +I    + GD   A  LFEE+K +  T     Y
Sbjct: 379 -ALDLARQV----TLKGLSPDVYTFNILINALCKVGDPQLALRLFEEMKSSGCTPDEVTY 433

Query: 420 NTLI 423
           NTLI
Sbjct: 434 NTLI 437



 Score = 82.8 bits (203), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 89/406 (21%), Positives = 179/406 (44%), Gaps = 17/406 (4%)

Query: 58  YRPKELDYSYLLEFTIKNHGISQGEKLF-CCIPKDYQNELLYNNLVIACLDK-GVIKLSL 115
           + P ++ Y+  +    +N  +    K+    + + +  ++   N+V+ CL K G ++ + 
Sbjct: 286 FEPDQITYNTFVNGLCQNGHVGHALKVMDVMVQEGHDPDVFTYNIVVNCLCKNGQLEEAK 345

Query: 116 EYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIE 175
             + +M   G       FN LI+   S  R +   ++ RQ+    ++P V TF+IL+   
Sbjct: 346 GILNQMVERGCLPDITTFNTLIVALCSGNRLEEALDLARQVTLKGLSPDVYTFNILINAL 405

Query: 176 ANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNW 235
               + +  ++++ +MK S   P+EV+Y  L     +  L  + +      E    G   
Sbjct: 406 CKVGDPQLALRLFEEMKSSGCTPDEVTYNTLI--DNLCSLGKLGKALDLLKEMESAGCPR 463

Query: 236 STLDVLIILYGYLAKGK--DLERIWATVQELPNVRSK-SYVLAIEAFGRIAQVSRAEELW 292
           ST+    I+ G   K +  + E ++  +      R+  ++   I+   +  ++  A +L 
Sbjct: 464 STVTYNTIIDGLCKKMRIEEAEEVFDQMDLQGISRNAITFNTLIDGLCKDKRIDDANQLI 523

Query: 293 LEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKS 352
            +M S         YNS+++ YCK G I KA+ +L+ M+ NG + + +TY  L  G  K+
Sbjct: 524 SQMISEGLQPNNITYNSILTHYCKQGDIKKAADILQTMTANGFEVDVVTYGTLINGLCKA 583

Query: 353 NLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANY 412
              +   K L  GM++    K   +TP  +    +I+    + +  +A NLF E+ +   
Sbjct: 584 GRTQVALKLLR-GMRI----KGMRATP--KAYNPVIQSLFRRNNTRDAMNLFREMTEVGE 636

Query: 413 TKYTFVYNTLIKAYVK--AKINDP-NLLRRMILGGARPDAETYSLL 455
               F Y  + +   +    I +  + L  M+  G  P+  ++ +L
Sbjct: 637 PPDAFTYKIVFRGLCRGGGSIREAFDFLLEMVDKGFIPEFSSFRML 682



 Score = 72.0 bits (175), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 97/405 (23%), Positives = 173/405 (42%), Gaps = 59/405 (14%)

Query: 94  NELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNIL 153
           + ++YN+L+   ++   +KL      +M   G     + FN L+       + +T   +L
Sbjct: 149 DTVVYNHLLNVLVEGSKMKLLETVYSEMGERGIKPDVVTFNTLMKALCRAHQVRTAVLML 208

Query: 154 RQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVS-------YCIL 206
            +M +  VAP  +TF  LM+    + +I+  ++V + M      P +V+       YC L
Sbjct: 209 EEMSSSGVAPDETTFTTLMQGFVEEGSIKAALRVKARMLEMGCSPTKVTVNVLINGYCKL 268

Query: 207 A------------TAHAVARLYTVAETYVEAL-EKSMTGNNWSTLDVLI----------- 242
                         A+          T+V  L +    G+    +DV++           
Sbjct: 269 GRVEDALGYIQQEIANGFEPDQITYNTFVNGLCQNGHVGHALKVMDVMVQEGHDPDVFTY 328

Query: 243 -ILYGYLAKGKDLERIWATVQE------LPNVRS-KSYVLAIEAFGRIAQVSRAEELWLE 294
            I+   L K   LE     + +      LP++ +  + ++A+ +  R+      E L L 
Sbjct: 329 NIVVNCLCKNGQLEEAKGILNQMVERGCLPDITTFNTLIVALCSGNRL-----EEALDLA 383

Query: 295 MQ-SVKQLKA-TEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKS 352
            Q ++K L      +N +I+  CK G    A  L +EM  +GC P+ +TY  L       
Sbjct: 384 RQVTLKGLSPDVYTFNILINALCKVGDPQLALRLFEEMKSSGCTPDEVTYNTLI-----D 438

Query: 353 NLVEEG--FKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKA 410
           NL   G   KAL+L  ++ +    RS+     T  +II+   +K  +  AE +F+++   
Sbjct: 439 NLCSLGKLGKALDLLKEMESAGCPRSTV----TYNTIIDGLCKKMRIEEAEEVFDQMDLQ 494

Query: 411 NYTKYTFVYNTLIKAYVKAK-INDPN-LLRRMILGGARPDAETYS 453
             ++    +NTLI    K K I+D N L+ +MI  G +P+  TY+
Sbjct: 495 GISRNAITFNTLIDGLCKDKRIDDANQLISQMISEGLQPNNITYN 539


>gi|302809105|ref|XP_002986246.1| hypothetical protein SELMODRAFT_123660 [Selaginella moellendorffii]
 gi|300146105|gb|EFJ12777.1| hypothetical protein SELMODRAFT_123660 [Selaginella moellendorffii]
          Length = 725

 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 79/306 (25%), Positives = 136/306 (44%), Gaps = 42/306 (13%)

Query: 152 ILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHA 211
           +L QM ++   P + TF+ ++      + ++   ++++ ++ S   PN V+Y  L     
Sbjct: 417 LLEQMLSNNCVPDIVTFNTIIDAMCKTYRVDIAYELFNLIQESGCTPNLVTYNSLVHGLC 476

Query: 212 VARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSKS 271
            +R +  AE     L + MT     + D++                             +
Sbjct: 477 KSRRFDQAE----YLLREMTRKQGCSPDII-----------------------------T 503

Query: 272 YVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMS 331
           Y   I+   +  +V RA +L+L+M S         Y+ VIS  CK  F+D+A+ +L+ M 
Sbjct: 504 YNTVIDGLCKSKRVDRAYKLFLQMLSDGLAPDDVTYSIVISSLCKWRFMDEANNVLELML 563

Query: 332 MNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIF 391
            NG  P AITY  L  G  K+  ++   KALE+ ++L+ +K    S P + T    I+  
Sbjct: 564 KNGFDPGAITYGTLIDGFCKTGNLD---KALEI-LQLLLSK---GSYPDVVTFSIFIDWL 616

Query: 392 AEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKINDP--NLLRRMILGGARPDA 449
           +++G +  A  L E + +A     T  YNTL+K +  A   +   +L   M   G  PD 
Sbjct: 617 SKRGRLRQAGELLETMLRAGLVPDTVTYNTLLKGFCDASRTEDAVDLFEVMRQCGCEPDN 676

Query: 450 ETYSLL 455
            TY+ L
Sbjct: 677 ATYTTL 682



 Score = 71.6 bits (174), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 73/317 (23%), Positives = 135/317 (42%), Gaps = 33/317 (10%)

Query: 152 ILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHA 211
           +L QM      P V ++  ++        ++   +V   M +   +PN ++Y  L     
Sbjct: 101 LLEQMVMRGCPPDVVSYTTVINGLCKLDQVDEACRVMDKMIQRGCQPNVITYGTLVDGFC 160

Query: 212 -VARLYTVAETYVEALEK-----SMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQEL- 264
            V  L    E   +  E+     ++T NN        I++G L  G+ L+      +E+ 
Sbjct: 161 RVGDLDGAVELVRKMTERGYRPNAITYNN--------IMHG-LCSGRKLDSALQLFKEME 211

Query: 265 ------PNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNG 318
                 P+V + S +  +++  +  +V  A  L   M S         Y+S++   CK G
Sbjct: 212 ESGSCPPDVFTYSTI--VDSLVKSGKVDDACRLVEAMVSKGCSPNVVTYSSLLHGLCKAG 269

Query: 319 FIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSST 378
            +D+A+ LL+ M+ +GC PN +TY  +  G  K   ++E +  LE   +++         
Sbjct: 270 KLDEATALLQRMTRSGCSPNIVTYNTIIDGHCKLGRIDEAYHLLE---EMVDG----GCQ 322

Query: 379 PWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKIND--PNL 436
           P + T   +++ F + G   +A  L E + +  Y    F YN+L+  + K    +    L
Sbjct: 323 PNVVTYTVLLDAFCKCGKAEDAIGLVEVMVEKGYVPNLFTYNSLLDMFCKKDEVERACQL 382

Query: 437 LRRMILGGARPDAETYS 453
           L  MI  G  P+  +Y+
Sbjct: 383 LSSMIQKGCVPNVVSYN 399



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 49/194 (25%), Positives = 89/194 (45%), Gaps = 12/194 (6%)

Query: 265 PNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKAS 324
           PNV   +Y   ++ F R+  +  A EL  +M           YN+++   C    +D A 
Sbjct: 147 PNV--ITYGTLVDGFCRVGDLDGAVELVRKMTERGYRPNAITYNNIMHGLCSGRKLDSAL 204

Query: 325 GLLKEMSMNG-CKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLET 383
            L KEM  +G C P+  TY  +     KS  V++         +L+     +  +P + T
Sbjct: 205 QLFKEMEESGSCPPDVFTYSTIVDSLVKSGKVDDA-------CRLVEAMVSKGCSPNVVT 257

Query: 384 TLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVK-AKINDP-NLLRRMI 441
             S++    + G +  A  L + + ++  +     YNT+I  + K  +I++  +LL  M+
Sbjct: 258 YSSLLHGLCKAGKLDEATALLQRMTRSGCSPNIVTYNTIIDGHCKLGRIDEAYHLLEEMV 317

Query: 442 LGGARPDAETYSLL 455
            GG +P+  TY++L
Sbjct: 318 DGGCQPNVVTYTVL 331


>gi|14532710|gb|AAK64156.1| unknown protein [Arabidopsis thaliana]
          Length = 974

 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 91/381 (23%), Positives = 164/381 (43%), Gaps = 20/381 (5%)

Query: 60  PKELDYSYLLEFTIKNHGISQGEKLFCCIPKDYQNELL----YNNLVIACLDKGVIKLSL 115
           P+   Y+ L+E   +   + QG +L   + K  +N ++    Y  +V      G +  + 
Sbjct: 380 PQAQAYASLIEGYCREKNVRQGYELLVEMKK--RNIVISPYTYGTVVKGMCSSGDLDGAY 437

Query: 116 EYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIE 175
             +K+M   G   + +++  LI       R      +L++MK   +AP +  ++ L+   
Sbjct: 438 NIVKEMIASGCRPNVVIYTTLIKTFLQNSRFGDAMRVLKEMKEQGIAPDIFCYNSLIIGL 497

Query: 176 ANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNW 235
           +    ++       +M  + ++PN  +Y    + +  A  +  A+ YV+ + +     N 
Sbjct: 498 SKAKRMDEARSFLVEMVENGLKPNAFTYGAFISGYIEASEFASADKYVKEMRECGVLPNK 557

Query: 236 STLDVLIILYGYLAKGKDLERIWA---TVQELPNVRSKSYVLAIEAFGRIAQVSRAEELW 292
                LI    Y  KGK +E   A    V +     +K+Y + +    +  +V  AEE++
Sbjct: 558 VLCTGLI--NEYCKKGKVIEACSAYRSMVDQGILGDAKTYTVLMNGLFKNDKVDDAEEIF 615

Query: 293 LEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKS 352
            EM+          Y  +I+ + K G + KAS +  EM   G  PN I Y  L  G  +S
Sbjct: 616 REMRGKGIAPDVFSYGVLINGFSKLGNMQKASSIFDEMVEEGLTPNVIIYNMLLGGFCRS 675

Query: 353 NLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANY 412
             +E   KA E    L+    V+   P   T  +II+ + + GD+  A  LF+E+K    
Sbjct: 676 GEIE---KAKE----LLDEMSVKGLHPNAVTYCTIIDGYCKSGDLAEAFRLFDEMKLKGL 728

Query: 413 TKYTFVYNTLIKAYVKAKIND 433
              +FVY TL+      ++ND
Sbjct: 729 VPDSFVYTTLVDGC--CRLND 747



 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 86/376 (22%), Positives = 160/376 (42%), Gaps = 29/376 (7%)

Query: 94  NELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNIL 153
           N ++Y  L+   L       ++  +K+M+  G +     +N LII  S   R     + L
Sbjct: 451 NVVIYTTLIKTFLQNSRFGDAMRVLKEMKEQGIAPDIFCYNSLIIGLSKAKRMDEARSFL 510

Query: 154 RQMKADKVAPHVSTFHILMK--IEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHA 211
            +M  + + P+  T+   +   IEA++       K   +M+   V PN+V    L   + 
Sbjct: 511 VEMVENGLKPNAFTYGAFISGYIEASE--FASADKYVKEMRECGVLPNKVLCTGLINEYC 568

Query: 212 V-ARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGK--DLERIWATVQE---LP 265
              ++      Y   +++ + G+  +     +++ G     K  D E I+  ++     P
Sbjct: 569 KKGKVIEACSAYRSMVDQGILGDAKT---YTVLMNGLFKNDKVDDAEEIFREMRGKGIAP 625

Query: 266 NVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASG 325
           +V S  Y + I  F ++  + +A  ++ EM           YN ++  +C++G I+KA  
Sbjct: 626 DVFS--YGVLINGFSKLGNMQKASSIFDEMVEEGLTPNVIIYNMLLGGFCRSGEIEKAKE 683

Query: 326 LLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTL 385
           LL EMS+ G  PNA+TY  +  G  KS  + E F       +L    K++   P      
Sbjct: 684 LLDEMSVKGLHPNAVTYCTIIDGYCKSGDLAEAF-------RLFDEMKLKGLVPDSFVYT 736

Query: 386 SIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKIND--PNLLRRMILG 443
           ++++      DV  A  +F   KK   +  T  +N LI    K    +    +L R++ G
Sbjct: 737 TLVDGCCRLNDVERAITIFGTNKKGCASS-TAPFNALINWVFKFGKTELKTEVLNRLMDG 795

Query: 444 G----ARPDAETYSLL 455
                 +P+  TY+++
Sbjct: 796 SFDRFGKPNDVTYNIM 811



 Score = 49.7 bits (117), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 58/225 (25%), Positives = 96/225 (42%), Gaps = 16/225 (7%)

Query: 237 TLDVLIILYGYLAKGKDLERIWATVQELPNV----RSKSYVLAIEAFGRIAQVSRAEELW 292
           T DVLI     L K K LE   + + E+ ++     + +Y L I+   +      A+ L 
Sbjct: 279 TYDVLI---DGLCKIKRLEDAKSLLVEMDSLGVSLDNHTYSLLIDGLLKGRNADAAKGLV 335

Query: 293 LEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKS 352
            EM S         Y+  I V  K G ++KA  L   M  +G  P A  Y  L  G  + 
Sbjct: 336 HEMVSHGINIKPYMYDCCICVMSKEGVMEKAKALFDGMIASGLIPQAQAYASLIEGYCRE 395

Query: 353 NLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANY 412
             V +G+       +L+   K R+      T  ++++     GD+  A N+ +E+  +  
Sbjct: 396 KNVRQGY-------ELLVEMKKRNIVISPYTYGTVVKGMCSSGDLDGAYNIVKEMIASGC 448

Query: 413 TKYTFVYNTLIKAYVK-AKINDP-NLLRRMILGGARPDAETYSLL 455
                +Y TLIK +++ ++  D   +L+ M   G  PD   Y+ L
Sbjct: 449 RPNVVIYTTLIKTFLQNSRFGDAMRVLKEMKEQGIAPDIFCYNSL 493



 Score = 40.0 bits (92), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 67/339 (19%), Positives = 138/339 (40%), Gaps = 47/339 (13%)

Query: 116 EYMKKMRVLGHSISYLVFNRLIILN--SSPGRRKTIPNILRQMKADKVAPHVSTFHILMK 173
           E  ++MR  G  I+  VF+  +++N  S  G  +   +I  +M  + + P+V  +++L+ 
Sbjct: 613 EIFREMR--GKGIAPDVFSYGVLINGFSKLGNMQKASSIFDEMVEEGLTPNVIIYNMLLG 670

Query: 174 IEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVA-------RLYT-------VA 219
                  IE   ++  +M    + PN V+YC +   +  +       RL+        V 
Sbjct: 671 GFCRSGEIEKAKELLDEMSVKGLHPNAVTYCTIIDGYCKSGDLAEAFRLFDEMKLKGLVP 730

Query: 220 ETYV-----------EALEKSMT--GNN----------WSTLDVLIILYGYLA-KGKDLE 255
           +++V             +E+++T  G N          ++ L   +  +G    K + L 
Sbjct: 731 DSFVYTTLVDGCCRLNDVERAITIFGTNKKGCASSTAPFNALINWVFKFGKTELKTEVLN 790

Query: 256 RIW-ATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVY 314
           R+   +          +Y + I+   +   +  A+EL+ +MQ+   +     Y S+++ Y
Sbjct: 791 RLMDGSFDRFGKPNDVTYNIMIDYLCKEGNLEAAKELFHQMQNANLMPTVITYTSLLNGY 850

Query: 315 CKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKV 374
            K G   +   +  E    G +P+ I Y  +     K  +     KAL L  ++     V
Sbjct: 851 DKMGRRAEMFPVFDEAIAAGIEPDHIMYSVIINAFLKEGMTT---KALVLVDQMFAKNAV 907

Query: 375 RSSTPW-LETTLSIIEIFAEKGDVGNAENLFEELKKANY 412
                  + T  +++  FA+ G++  AE + E + +  Y
Sbjct: 908 DDGCKLSISTCRALLSGFAKVGEMEVAEKVMENMVRLQY 946


>gi|222634970|gb|EEE65102.1| hypothetical protein OsJ_20158 [Oryza sativa Japonica Group]
          Length = 552

 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 89/370 (24%), Positives = 160/370 (43%), Gaps = 19/370 (5%)

Query: 94  NELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNIL 153
           N   YN LV A   +G ++ ++  +  MR  G + + + +N L+      G       ++
Sbjct: 9   NVYTYNILVRALCARGRLEEAVGVVGDMRGAGCAPNAVTYNTLVAAFCRAGELDGAERVV 68

Query: 154 RQMKADKVA-PHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHA- 211
             M+ +  A P++ TF+ ++        +EG  KV+ +M R  + P+ VSY  L + +  
Sbjct: 69  SLMREEGNAKPNLVTFNSMVNGLCKAGRMEGARKVFDEMVREGLAPDVVSYNTLLSGYCK 128

Query: 212 VARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPN----V 267
           V  L+     + E  ++ +  +  +       L     K  +LE+  A V ++      +
Sbjct: 129 VGCLHESLAVFSEMTQRGLVPDVVT----FTSLIHATCKAGNLEQAVALVAQMRERGLRM 184

Query: 268 RSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLL 327
              ++   I+ F +   +  A     EM+      +   YN++I+ YCK G +D A  L+
Sbjct: 185 NEVTFTALIDGFCKKGFLDDALLAVEEMRKCGIQPSVVCYNALINGYCKLGRMDLARELI 244

Query: 328 KEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSI 387
           +EM     KP+ +TY  +  G  K   ++  F   +L  K++     +   P   T  S+
Sbjct: 245 REMEAKRVKPDVVTYSTIISGYCKVGNLDSAF---QLNQKMLK----KGVLPDAITYSSL 297

Query: 388 IEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKINDP--NLLRRMILGGA 445
           I    E+  + +A  LFE + +       F Y TLI  + K    +   +L   MI  G 
Sbjct: 298 IRGLCEEKRLNDACELFENMLQLGVQPDEFTYTTLIDGHCKEGNVEKALSLHDEMIRKGV 357

Query: 446 RPDAETYSLL 455
            PD  TYS+L
Sbjct: 358 LPDVVTYSVL 367



 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 87/348 (25%), Positives = 149/348 (42%), Gaps = 19/348 (5%)

Query: 87  CIPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLV-FNRLIILNSSPGR 145
           C P    N + YN LV A    G +  +   +  MR  G++   LV FN ++      GR
Sbjct: 41  CAP----NAVTYNTLVAAFCRAGELDGAERVVSLMREEGNAKPNLVTFNSMVNGLCKAGR 96

Query: 146 RKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCI 205
            +    +  +M  + +AP V +++ L+        +   + V+S+M +  + P+ V++  
Sbjct: 97  MEGARKVFDEMVREGLAPDVVSYNTLLSGYCKVGCLHESLAVFSEMTQRGLVPDVVTFTS 156

Query: 206 LATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELP 265
           L  A   A     A   V  + +     N  T   LI   G+  KG  L+     V+E+ 
Sbjct: 157 LIHATCKAGNLEQAVALVAQMRERGLRMNEVTFTALI--DGFCKKGF-LDDALLAVEEMR 213

Query: 266 NVRSKSYVLA----IEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFID 321
               +  V+     I  + ++ ++  A EL  EM++ +       Y+++IS YCK G +D
Sbjct: 214 KCGIQPSVVCYNALINGYCKLGRMDLARELIREMEAKRVKPDVVTYSTIISGYCKVGNLD 273

Query: 322 KASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWL 381
            A  L ++M   G  P+AITY  L  G     L EE  K L    +L          P  
Sbjct: 274 SAFQLNQKMLKKGVLPDAITYSSLIRG-----LCEE--KRLNDACELFENMLQLGVQPDE 326

Query: 382 ETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKA 429
            T  ++I+   ++G+V  A +L +E+ +         Y+ LI    K+
Sbjct: 327 FTYTTLIDGHCKEGNVEKALSLHDEMIRKGVLPDVVTYSVLINGLSKS 374



 Score = 72.0 bits (175), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 73/303 (24%), Positives = 127/303 (41%), Gaps = 19/303 (6%)

Query: 161 VAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAE 220
           VAP+V T++IL++       +E  + V  DM+ +   PN V+Y  L  A   A     AE
Sbjct: 6   VAPNVYTYNILVRALCARGRLEEAVGVVGDMRGAGCAPNAVTYNTLVAAFCRAGELDGAE 65

Query: 221 TYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQEL------PNVRSKSYVL 274
             V  + +   GN    L     +   L K   +E       E+      P+V S + +L
Sbjct: 66  RVVSLMREE--GNAKPNLVTFNSMVNGLCKAGRMEGARKVFDEMVREGLAPDVVSYNTLL 123

Query: 275 AIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNG 334
           +   + ++  +  +  ++ EM     +     + S+I   CK G +++A  L+ +M   G
Sbjct: 124 S--GYCKVGCLHESLAVFSEMTQRGLVPDVVTFTSLIHATCKAGNLEQAVALVAQMRERG 181

Query: 335 CKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEK 394
            + N +T+  L  G  K   +++   A+E   K           P +    ++I  + + 
Sbjct: 182 LRMNEVTFTALIDGFCKKGFLDDALLAVEEMRKC-------GIQPSVVCYNALINGYCKL 234

Query: 395 GDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKINDP--NLLRRMILGGARPDAETY 452
           G +  A  L  E++          Y+T+I  Y K    D    L ++M+  G  PDA TY
Sbjct: 235 GRMDLARELIREMEAKRVKPDVVTYSTIISGYCKVGNLDSAFQLNQKMLKKGVLPDAITY 294

Query: 453 SLL 455
           S L
Sbjct: 295 SSL 297



 Score = 52.4 bits (124), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 70/346 (20%), Positives = 133/346 (38%), Gaps = 19/346 (5%)

Query: 98  YNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMK 157
           YN L+      G +  SL    +M   G     + F  LI      G  +    ++ QM+
Sbjct: 119 YNTLLSGYCKVGCLHESLAVFSEMTQRGLVPDVVTFTSLIHATCKAGNLEQAVALVAQMR 178

Query: 158 ADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYT 217
              +  +  TF  L+        ++  +    +M++  ++P+ V Y  L   +       
Sbjct: 179 ERGLRMNEVTFTALIDGFCKKGFLDDALLAVEEMRKCGIQPSVVCYNALINGYCKLGRMD 238

Query: 218 VAETYVEALEKSMTGNNWSTLDVLIILY---GYLAKGKDLERIWATVQELPNVRSKSYVL 274
           +A   +  +E      +  T   +I  Y   G L     L +       LP+  + +Y  
Sbjct: 239 LARELIREMEAKRVKPDVVTYSTIISGYCKVGNLDSAFQLNQKMLKKGVLPD--AITYSS 296

Query: 275 AIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNG 334
            I       +++ A EL+  M  +        Y ++I  +CK G ++KA  L  EM   G
Sbjct: 297 LIRGLCEEKRLNDACELFENMLQLGVQPDEFTYTTLIDGHCKEGNVEKALSLHDEMIRKG 356

Query: 335 CKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPW-----------LET 383
             P+ +TY  L  G  KS   +E  + L    KL     V  +  +            ++
Sbjct: 357 VLPDVVTYSVLINGLSKSARTKEAHRLL---FKLYHEDPVPDNIKYDALMLCCSKAEFKS 413

Query: 384 TLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKA 429
            +++++ F  KG +  A+ +++ +   N+     VY+ LI  + + 
Sbjct: 414 VVALLKGFCMKGLMKEADKVYQSMLDRNWKLDGSVYSILIHGHCRG 459



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 75/380 (19%), Positives = 159/380 (41%), Gaps = 39/380 (10%)

Query: 53  IRERPYRPKELDYSYLLEFTIKNHGISQGEKLFCCIPKD--YQNELLYNNLVIACLDKGV 110
           + +R   P  + ++ L+  T K   + Q   L   + +     NE+ +  L+     KG 
Sbjct: 142 MTQRGLVPDVVTFTSLIHATCKAGNLEQAVALVAQMRERGLRMNEVTFTALIDGFCKKGF 201

Query: 111 IKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHI 170
           +  +L  +++MR  G   S + +N LI      GR      ++R+M+A +V P V T+  
Sbjct: 202 LDDALLAVEEMRKCGIQPSVVCYNALINGYCKLGRMDLARELIREMEAKRVKPDVVTYST 261

Query: 171 LMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAV-ARLYTVAETYVEALEKS 229
           ++       N++   ++   M +  V P+ ++Y  L        RL    E +   L+  
Sbjct: 262 IISGYCKVGNLDSAFQLNQKMLKKGVLPDAITYSSLIRGLCEEKRLNDACELFENMLQLG 321

Query: 230 MTGNNWSTLDVLIILYGYLAKGKDLERIWATVQE------LPNVRSKSYVLAIEAFGRIA 283
           +  + ++      ++ G+  +G ++E+  +   E      LP+V   +Y + I    + A
Sbjct: 322 VQPDEFT---YTTLIDGHCKEG-NVEKALSLHDEMIRKGVLPDV--VTYSVLINGLSKSA 375

Query: 284 QVSRAEELWLEM------------QSVKQLKATEQYNSVISV---YCKNGFIDKASGLLK 328
           +   A  L  ++             ++    +  ++ SV+++   +C  G + +A  + +
Sbjct: 376 RTKEAHRLLFKLYHEDPVPDNIKYDALMLCCSKAEFKSVVALLKGFCMKGLMKEADKVYQ 435

Query: 329 EMSMNGCKPNAITYRHLALG-CFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSI 387
            M     K +   Y  L  G C   N+     KAL    +++ +      +P   +T+S+
Sbjct: 436 SMLDRNWKLDGSVYSILIHGHCRGGNV----RKALSFHKQMLRS----GFSPNSTSTISL 487

Query: 388 IEIFAEKGDVGNAENLFEEL 407
           +    E+G V  A+N  ++L
Sbjct: 488 VRGLFEEGMVVEADNAIQDL 507


>gi|357449185|ref|XP_003594869.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355483917|gb|AES65120.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 545

 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 89/390 (22%), Positives = 154/390 (39%), Gaps = 48/390 (12%)

Query: 105 CLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPH 164
           CL KG +  +L +  K+   G  +  + +  LI      G  K    +LR++    V P+
Sbjct: 139 CL-KGEVHKALYFHDKVVAQGFQLDQVSYGTLINGLCRVGETKAAVQLLRRVDGKLVRPN 197

Query: 165 VSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHA-VARLYTVAETYV 223
           V  +  ++     D  +     +Y +M    + P+ V+Y  L +    V +L    + + 
Sbjct: 198 VVMYSTIIDSMCKDKLVNDAFDLYCEMVSKRISPDVVTYSSLISGFCVVGKLKYAVDLFN 257

Query: 224 EALEKSMTGNNWSTLDVLI----------------------------ILYGYLAKGKDLE 255
             +  ++  N + T  +LI                            + Y  L  G  L 
Sbjct: 258 RMISDNINPNVY-TFSILIDGFCKEGKVREAKNVLAVMMKKNVKLDVVTYNSLMDGYCLV 316

Query: 256 RIWATVQELPNVRSK--------SYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQY 307
           +     + L NV ++        SY + I  F +I  V  A +L+ EM   +       Y
Sbjct: 317 KQVNKAKSLFNVMAQRGVTPDVWSYSIMINGFCKIKMVDEAMKLFEEMHCKQIFPNVVTY 376

Query: 308 NSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMK 367
           NS++   CK+G    A  L+ EM   G   N ITY  +     K+N V++        + 
Sbjct: 377 NSLVDGLCKSGRTSCALELVDEMHDRGQPSNIITYNSILDAICKNNHVDK-------AIV 429

Query: 368 LITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYV 427
           L+T  K +   P + T   +I    + G + +A+ +FE+L    Y+   + Y +LI  + 
Sbjct: 430 LLTKIKEKGIQPDIFTYTVLINGLCKVGRLDDAQKVFEDLLVKGYSPNIYTYTSLINGFC 489

Query: 428 KAKINDPNL--LRRMILGGARPDAETYSLL 455
                D  L  L +M   G  P+A TY +L
Sbjct: 490 NKGFFDEGLAMLSKMKDNGCIPNAITYEIL 519



 Score = 76.3 bits (186), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 76/310 (24%), Positives = 133/310 (42%), Gaps = 22/310 (7%)

Query: 144 GRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSY 203
           G+ K   ++  +M +D + P+V TF IL+     +  +     V + M +  V+ + V+Y
Sbjct: 247 GKLKYAVDLFNRMISDNINPNVYTFSILIDGFCKEGKVREAKNVLAVMMKKNVKLDVVTY 306

Query: 204 CILATAHAVARLYTVAETYVEAL-EKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQ 262
             L   + + +    A++    + ++ +T + WS     I++ G+  K K ++      +
Sbjct: 307 NSLMDGYCLVKQVNKAKSLFNVMAQRGVTPDVWS---YSIMINGF-CKIKMVDEAMKLFE 362

Query: 263 EL------PNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCK 316
           E+      PNV +  Y   ++   +  + S A EL  EM    Q      YNS++   CK
Sbjct: 363 EMHCKQIFPNVVT--YNSLVDGLCKSGRTSCALELVDEMHDRGQPSNIITYNSILDAICK 420

Query: 317 NGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRS 376
           N  +DKA  LL ++   G +P+  TY  L  G  K   +++  K  E  +       V+ 
Sbjct: 421 NNHVDKAIVLLTKIKEKGIQPDIFTYTVLINGLCKVGRLDDAQKVFEDLL-------VKG 473

Query: 377 STPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKINDP-- 434
            +P + T  S+I  F  KG       +  ++K          Y  LI +  +   ND   
Sbjct: 474 YSPNIYTYTSLINGFCNKGFFDEGLAMLSKMKDNGCIPNAITYEILIHSLFEKDENDKAE 533

Query: 435 NLLRRMILGG 444
            LLR MI  G
Sbjct: 534 KLLREMIARG 543



 Score = 52.4 bits (124), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 74/322 (22%), Positives = 133/322 (41%), Gaps = 30/322 (9%)

Query: 147 KTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCIL 206
           +T  ++ +QM+ + + P   T ++LM   +   +I+    V++ + +    P+ V++ IL
Sbjct: 75  QTALSLSQQMEFNGIKPDFITCNLLMNCFSQLGHIKFSFSVFAKILKKGYHPDAVTFTIL 134

Query: 207 ATAHAV-ARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIW---ATVQ 262
                +   ++     + + + +    +  S        YG L  G  L R+    A VQ
Sbjct: 135 IKGLCLKGEVHKALYFHDKVVAQGFQLDQVS--------YGTLING--LCRVGETKAAVQ 184

Query: 263 ELPNVRSK-------SYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYC 315
            L  V  K        Y   I++  +   V+ A +L+ EM S +       Y+S+IS +C
Sbjct: 185 LLRRVDGKLVRPNVVMYSTIIDSMCKDKLVNDAFDLYCEMVSKRISPDVVTYSSLISGFC 244

Query: 316 KNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVR 375
             G +  A  L   M  +   PN  T+  L  G  K   V E    L + MK    K V+
Sbjct: 245 VVGKLKYAVDLFNRMISDNINPNVYTFSILIDGFCKEGKVREAKNVLAVMMK----KNVK 300

Query: 376 SSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKINDP- 434
                + T  S+++ +     V  A++LF  + +   T   + Y+ +I  + K K+ D  
Sbjct: 301 LD---VVTYNSLMDGYCLVKQVNKAKSLFNVMAQRGVTPDVWSYSIMINGFCKIKMVDEA 357

Query: 435 -NLLRRMILGGARPDAETYSLL 455
             L   M      P+  TY+ L
Sbjct: 358 MKLFEEMHCKQIFPNVVTYNSL 379


>gi|242033891|ref|XP_002464340.1| hypothetical protein SORBIDRAFT_01g016560 [Sorghum bicolor]
 gi|241918194|gb|EER91338.1| hypothetical protein SORBIDRAFT_01g016560 [Sorghum bicolor]
          Length = 758

 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 84/404 (20%), Positives = 176/404 (43%), Gaps = 13/404 (3%)

Query: 58  YRPKELDYSYLLEFTIKNHGISQGEKLF-CCIPKDYQNELLYNNLVIACLDK-GVIKLSL 115
           + P ++ Y+  +    +N  +S   K+    + + +  ++   N VI CL K G +  + 
Sbjct: 298 FEPDQVTYNTFVHGLCQNGHVSHALKVMDLMLQEGHDPDVFTYNTVINCLSKNGELDEAK 357

Query: 116 EYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIE 175
             + +M   G       FN LI+  SS  R +   ++ R++    ++P V TF+IL+   
Sbjct: 358 GIVNQMVDRGCLPDTTTFNTLIVALSSQNRLEEALDLARELTVKGLSPDVYTFNILINAL 417

Query: 176 ANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNW 235
               +    ++++ +MK S   P+EV+Y IL            A   +  +E +    + 
Sbjct: 418 CKVGDPHLGIRLFEEMKSSGCTPDEVTYNILIDHLCSMGKLGNALDLLNEMESNGCPRST 477

Query: 236 STLDVLIILYGYLAKGKDLERIWATVQELPNVRSK-SYVLAIEAFGRIAQVSRAEELWLE 294
            T + +I       + ++ E ++  +      RS  ++   I+   +  ++  A EL  +
Sbjct: 478 VTYNTIIDALCKKMRIEEAEEVFDQMDAQGISRSAVTFNTLIDGLCKAKRIDDATELIEQ 537

Query: 295 MQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNL 354
           M           YNS+++ YCK G I KA+ +L+ M+ NG + + +TY  L  G  K+  
Sbjct: 538 MVKEGLQPNNITYNSILTHYCKQGNIKKAADILETMTANGFEIDVVTYGTLINGLCKAGR 597

Query: 355 VEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTK 414
            +       + +KL+   +++   P  +    +I+    + ++ +A NLF E+ +     
Sbjct: 598 TQ-------VALKLLRGMRIKGIRPTPKAYNPVIQSLFRRNNLRDALNLFREMTEVGEPP 650

Query: 415 YTFVYNTLIKAYVK--AKINDP-NLLRRMILGGARPDAETYSLL 455
               Y  + ++  +    I +  + L  M+  G  P+  ++ +L
Sbjct: 651 DALTYKIVFRSLCRGGGPIKEAFDFLVEMVNKGFMPEFSSFRML 694



 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 81/369 (21%), Positives = 142/369 (38%), Gaps = 74/369 (20%)

Query: 94  NELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNIL 153
           + +++N+L+   ++   +KL      +M   G     +  N LI       + +T   +L
Sbjct: 161 DTVVFNHLLNVLVEGSKLKLLESVYNEMTGRGIQPDVVTLNTLIKALCRAHQVRTAVLML 220

Query: 154 RQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVA 213
            +M +  VAP  +TF  LM+    + +IE  ++V + M  +   P  V            
Sbjct: 221 EEMSSHGVAPDETTFTTLMQGFIEEGSIEAALRVKAKMMEAGCSPTGV------------ 268

Query: 214 RLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPN------V 267
                                  T++VLI   GY   G+  + +    QE+ +      V
Sbjct: 269 -----------------------TVNVLI--NGYCKMGRVEDALGYIQQEIADGFEPDQV 303

Query: 268 RSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLL 327
              ++V  +   G ++   +  +L L+      +     YN+VI+   KNG +D+A G++
Sbjct: 304 TYNTFVHGLCQNGHVSHALKVMDLMLQEGHDPDVFT---YNTVINCLSKNGELDEAKGIV 360

Query: 328 KEMSMNGCKPNAITYRHLALGCFKSNLVEEGF--------KAL----------------- 362
            +M   GC P+  T+  L +     N +EE          K L                 
Sbjct: 361 NQMVDRGCLPDTTTFNTLIVALSSQNRLEEALDLARELTVKGLSPDVYTFNILINALCKV 420

Query: 363 ---ELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVY 419
               LG++L    K    TP   T   +I+     G +GNA +L  E++     + T  Y
Sbjct: 421 GDPHLGIRLFEEMKSSGCTPDEVTYNILIDHLCSMGKLGNALDLLNEMESNGCPRSTVTY 480

Query: 420 NTLIKAYVK 428
           NT+I A  K
Sbjct: 481 NTIIDALCK 489



 Score = 56.2 bits (134), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 72/365 (19%), Positives = 146/365 (40%), Gaps = 48/365 (13%)

Query: 97  LYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRR--KTIPNILR 154
           +Y  +V      G   L    +++MR  GH +  +V  R  + + +  RR    +  +L 
Sbjct: 91  VYEEIVQKLGTAGAFDLMEGLVREMRREGHQVRAVVV-RSFVESYARLRRFDDAVDLVLN 149

Query: 155 QMKADKVAPHVST--FHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAV 212
           Q+  D       T  F+ L+ +      ++ L  VY++M    ++P+ V+   L  A   
Sbjct: 150 QLDNDTFGVQADTVVFNHLLNVLVEGSKLKLLESVYNEMTGRGIQPDVVTLNTLIKALCR 209

Query: 213 ARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSKSY 272
           A     A   +E +       + +T   L  + G++ +G                     
Sbjct: 210 AHQVRTAVLMLEEMSSHGVAPDETTFTTL--MQGFIEEG--------------------- 246

Query: 273 VLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSM 332
             +IEA  R+           +M            N +I+ YCK G ++ A G +++   
Sbjct: 247 --SIEAALRVKA---------KMMEAGCSPTGVTVNVLINGYCKMGRVEDALGYIQQEIA 295

Query: 333 NGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFA 392
           +G +P+ +TY     G  ++  V    K ++L ++           P + T  ++I   +
Sbjct: 296 DGFEPDQVTYNTFVHGLCQNGHVSHALKVMDLMLQ-------EGHDPDVFTYNTVINCLS 348

Query: 393 EKGDVGNAENLFEELKKANYTKYTFVYNTLIKAY-VKAKINDP-NLLRRMILGGARPDAE 450
           + G++  A+ +  ++        T  +NTLI A   + ++ +  +L R + + G  PD  
Sbjct: 349 KNGELDEAKGIVNQMVDRGCLPDTTTFNTLIVALSSQNRLEEALDLARELTVKGLSPDVY 408

Query: 451 TYSLL 455
           T+++L
Sbjct: 409 TFNIL 413


>gi|297816792|ref|XP_002876279.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297322117|gb|EFH52538.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 850

 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 95/356 (26%), Positives = 158/356 (44%), Gaps = 22/356 (6%)

Query: 109 GVIKLSLEYMKKMRVLGHSISYLVFN-RLIILNSSPGRRKTIPNILRQMKADKVAPHVST 167
           G ++ +LE+ KKM  LG + S  VF+   II     G++      L     +    +V  
Sbjct: 387 GEMEKALEFYKKMESLGLTPS--VFHVHTIIQGWLKGQKHEEALKLFDESFETGLANVFI 444

Query: 168 FHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAET-YVEAL 226
            + ++        I+   ++   M+   + PN VSY  +  AH   +   +A T +   L
Sbjct: 445 CNTILSWLCKQGKIDKATELLRKMESRGIGPNVVSYNNVMLAHCRKKNMDLARTVFSNML 504

Query: 227 EKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPN----VRSKSYVLAIEAFGRI 282
           EK +  NN++      IL     K  D + +   V ++ +    V    Y   I    ++
Sbjct: 505 EKGLKPNNYT----YSILIDGCFKNHDEQNVLEVVNQMTSSNIEVNGVVYQTIINGLCKV 560

Query: 283 AQVSRAEELWLEMQSVKQLKAT-EQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAIT 341
            Q S+A EL   M   K+   +   YNS+I  + K G +D A    +EM  NG  PN IT
Sbjct: 561 GQTSKARELLANMIEEKRFCVSCMSYNSIIDGFIKEGEMDYAVAAYEEMCANGISPNVIT 620

Query: 342 YRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAE 401
           Y  L  G  K+N +++   ALE+  ++   K V+   P      ++I  F +K ++ +A 
Sbjct: 621 YTSLMDGLCKNNRMDQ---ALEMRDEM-KNKGVKLDIPAYG---ALIHGFCKKSNMESAS 673

Query: 402 NLFEELKKANYTKYTFVYNTLIKAY--VKAKINDPNLLRRMILGGARPDAETYSLL 455
            LF EL +        VYN+LI  +  +   +   +L ++M+  G R D  TY+ L
Sbjct: 674 ALFSELLEEGLNPSQPVYNSLISGFRNLGNMVAALDLYKKMLKDGLRCDLGTYTTL 729



 Score = 59.7 bits (143), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 82/400 (20%), Positives = 161/400 (40%), Gaps = 44/400 (11%)

Query: 94  NELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNIL 153
           N  + N ++     +G I  + E ++KM   G   + + +N +++ +           + 
Sbjct: 441 NVFICNTILSWLCKQGKIDKATELLRKMESRGIGPNVVSYNNVMLAHCRKKNMDLARTVF 500

Query: 154 RQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSY-CILATAHAV 212
             M    + P+  T+ IL+     +H+ + +++V + M  S +E N V Y  I+     V
Sbjct: 501 SNMLEKGLKPNNYTYSILIDGCFKNHDEQNVLEVVNQMTSSNIEVNGVVYQTIINGLCKV 560

Query: 213 ARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQEL------PN 266
            +     E     +E+       S +    I+ G++ +G +++   A  +E+      PN
Sbjct: 561 GQTSKARELLANMIEEKRFC--VSCMSYNSIIDGFIKEG-EMDYAVAAYEEMCANGISPN 617

Query: 267 VRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGL 326
           V   +Y   ++   +  ++ +A E+  EM++         Y ++I  +CK   ++ AS L
Sbjct: 618 V--ITYTSLMDGLCKNNRMDQALEMRDEMKNKGVKLDIPAYGALIHGFCKKSNMESASAL 675

Query: 327 LKEMSMNGCKPNAITYRHL------------ALGCFKSNLVEEGFKA------------- 361
             E+   G  P+   Y  L            AL  +K  ++++G +              
Sbjct: 676 FSELLEEGLNPSQPVYNSLISGFRNLGNMVAALDLYKK-MLKDGLRCDLGTYTTLIDGLL 734

Query: 362 ----LELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTF 417
               L L   L T  +     P       I+   ++KG       +FEE+KK N T    
Sbjct: 735 KEGNLILASDLYTEMQAVGLVPDEIMYTVIVNGLSKKGQFVKVVKMFEEMKKNNVTPNVL 794

Query: 418 VYNTLIKA-YVKAKINDP-NLLRRMILGGARPDAETYSLL 455
           +YN +I   Y +  +++   L   M+  G  PD  T+ +L
Sbjct: 795 IYNAVIAGHYREGNLDEAFRLHDEMLDKGILPDGATFDIL 834



 Score = 46.6 bits (109), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 59/316 (18%), Positives = 132/316 (41%), Gaps = 16/316 (5%)

Query: 55  ERPYRPKELDYSYLLEFTIKNHGISQGEKLFCCIPKDYQNELLYNNLVIACLDKGVIKLS 114
           E+  +P    YS L++   KNH     + +   + +   + +  N +V   +  G+ K+ 
Sbjct: 505 EKGLKPNNYTYSILIDGCFKNH---DEQNVLEVVNQMTSSNIEVNGVVYQTIINGLCKVG 561

Query: 115 LEYMKKMRVLGHSI-------SYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVST 167
            +  K   +L + I       S + +N +I      G          +M A+ ++P+V T
Sbjct: 562 -QTSKARELLANMIEEKRFCVSCMSYNSIIDGFIKEGEMDYAVAAYEEMCANGISPNVIT 620

Query: 168 FHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAV-ARLYTVAETYVEAL 226
           +  LM     ++ ++  +++  +MK   V+ +  +Y  L       + + + +  + E L
Sbjct: 621 YTSLMDGLCKNNRMDQALEMRDEMKNKGVKLDIPAYGALIHGFCKKSNMESASALFSELL 680

Query: 227 EKSMTGNN--WSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQ 284
           E+ +  +   +++L       G +    DL +    +++       +Y   I+   +   
Sbjct: 681 EEGLNPSQPVYNSLISGFRNLGNMVAALDLYK--KMLKDGLRCDLGTYTTLIDGLLKEGN 738

Query: 285 VSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRH 344
           +  A +L+ EMQ+V  +     Y  +++   K G   K   + +EM  N   PN + Y  
Sbjct: 739 LILASDLYTEMQAVGLVPDEIMYTVIVNGLSKKGQFVKVVKMFEEMKKNNVTPNVLIYNA 798

Query: 345 LALGCFKSNLVEEGFK 360
           +  G ++   ++E F+
Sbjct: 799 VIAGHYREGNLDEAFR 814



 Score = 38.1 bits (87), Expect = 9.8,   Method: Compositional matrix adjust.
 Identities = 51/272 (18%), Positives = 111/272 (40%), Gaps = 15/272 (5%)

Query: 82  EKLFC--CIPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIIL 139
           EK FC  C+         YN+++   + +G +  ++   ++M   G S + + +  L+  
Sbjct: 576 EKRFCVSCMS--------YNSIIDGFIKEGEMDYAVAAYEEMCANGISPNVITYTSLMDG 627

Query: 140 NSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPN 199
                R      +  +MK   V   +  +  L+       N+E    ++S++    + P+
Sbjct: 628 LCKNNRMDQALEMRDEMKNKGVKLDIPAYGALIHGFCKKSNMESASALFSELLEEGLNPS 687

Query: 200 EVSY-CILATAHAVARLYTVAETYVEALEKSMTGN--NWSTLDVLIILYGYLAKGKDLER 256
           +  Y  +++    +  +    + Y + L+  +  +   ++TL   ++  G L    DL  
Sbjct: 688 QPVYNSLISGFRNLGNMVAALDLYKKMLKDGLRCDLGTYTTLIDGLLKEGNLILASDLYT 747

Query: 257 IWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCK 316
               V  +P+     Y + +    +  Q  +  +++ EM+          YN+VI+ + +
Sbjct: 748 EMQAVGLVPD--EIMYTVIVNGLSKKGQFVKVVKMFEEMKKNNVTPNVLIYNAVIAGHYR 805

Query: 317 NGFIDKASGLLKEMSMNGCKPNAITYRHLALG 348
            G +D+A  L  EM   G  P+  T+  L  G
Sbjct: 806 EGNLDEAFRLHDEMLDKGILPDGATFDILVSG 837


>gi|218197600|gb|EEC80027.1| hypothetical protein OsI_21710 [Oryza sativa Indica Group]
          Length = 694

 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 91/370 (24%), Positives = 161/370 (43%), Gaps = 19/370 (5%)

Query: 94  NELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNIL 153
           N   YN LV A   +G ++ ++  +  MR  G + + + +N L+      G       ++
Sbjct: 151 NVYTYNILVRALCARGRLEEAVGVVGDMRGAGCAPNAVTYNTLVAAFCRAGELDGAERVV 210

Query: 154 RQMKADKVA-PHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHA- 211
             M+ +  A P++ TF+ ++        +EG  KV+ +M R  + P+ VSY  L + +  
Sbjct: 211 SLMREEGNAKPNLVTFNSMVNGLCKAGRMEGARKVFDEMVREGLAPDVVSYNTLLSGYCK 270

Query: 212 VARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPN----V 267
           V  L+     + E  ++ +   +  T   LI       K  +LE+  A V ++      +
Sbjct: 271 VGCLHESLAVFSEMTQRGLV-PDVVTFTSLI---HATCKAGNLEQAVALVAQMRERGLRM 326

Query: 268 RSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLL 327
              ++   I+ F +   +  A     EM+      +   YN++I+ YCK G +D A  L+
Sbjct: 327 NEVTFTALIDGFCKKGFLDDALLAVEEMRKCGIQPSVVCYNALINGYCKLGRMDLARELI 386

Query: 328 KEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSI 387
           +EM     KP+ +TY  +  G  K   ++  F   +L  K++     +   P   T  S+
Sbjct: 387 REMEAKRVKPDVVTYSTIISGYCKVGNLDSAF---QLNQKMLK----KGVLPDAITYSSL 439

Query: 388 IEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKINDP--NLLRRMILGGA 445
           I    E+  + +A  LFE + +       F Y TLI  + K    +   +L   MI  G 
Sbjct: 440 IRGLCEEKRLNDACELFENMLQLGVQPDEFTYTTLIDGHCKEGNVEKALSLHDEMIRKGV 499

Query: 446 RPDAETYSLL 455
            PD  TYS+L
Sbjct: 500 LPDVVTYSVL 509



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 81/342 (23%), Positives = 143/342 (41%), Gaps = 26/342 (7%)

Query: 125 GHSISYLVFNRLIILNSS---PGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNI 181
           G++ S   +N +++  S    P  R+ + ++LR      VAP+V T++IL++       +
Sbjct: 113 GYAPSVPAYNAVLLALSDASLPSARRFLSSMLRH----GVAPNVYTYNILVRALCARGRL 168

Query: 182 EGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVL 241
           E  + V  DM+ +   PN V+Y  L  A   A     AE  V  + +   GN    L   
Sbjct: 169 EEAVGVVGDMRGAGCAPNAVTYNTLVAAFCRAGELDGAERVVSLMREE--GNAKPNLVTF 226

Query: 242 IILYGYLAKGKDLERIWATVQEL------PNVRSKSYVLAIEAFGRIAQVSRAEELWLEM 295
             +   L K   +E       E+      P+V   SY   +  + ++  +  +  ++ EM
Sbjct: 227 NSMVNGLCKAGRMEGARKVFDEMVREGLAPDV--VSYNTLLSGYCKVGCLHESLAVFSEM 284

Query: 296 QSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLV 355
                +     + S+I   CK G +++A  L+ +M   G + N +T+  L  G  K   +
Sbjct: 285 TQRGLVPDVVTFTSLIHATCKAGNLEQAVALVAQMRERGLRMNEVTFTALIDGFCKKGFL 344

Query: 356 EEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKY 415
           ++   A+E   K           P +    ++I  + + G +  A  L  E++       
Sbjct: 345 DDALLAVEEMRKC-------GIQPSVVCYNALINGYCKLGRMDLARELIREMEAKRVKPD 397

Query: 416 TFVYNTLIKAYVKAKINDP--NLLRRMILGGARPDAETYSLL 455
              Y+T+I  Y K    D    L ++M+  G  PDA TYS L
Sbjct: 398 VVTYSTIISGYCKVGNLDSAFQLNQKMLKKGVLPDAITYSSL 439



 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 87/348 (25%), Positives = 149/348 (42%), Gaps = 19/348 (5%)

Query: 87  CIPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLV-FNRLIILNSSPGR 145
           C P    N + YN LV A    G +  +   +  MR  G++   LV FN ++      GR
Sbjct: 183 CAP----NAVTYNTLVAAFCRAGELDGAERVVSLMREEGNAKPNLVTFNSMVNGLCKAGR 238

Query: 146 RKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCI 205
            +    +  +M  + +AP V +++ L+        +   + V+S+M +  + P+ V++  
Sbjct: 239 MEGARKVFDEMVREGLAPDVVSYNTLLSGYCKVGCLHESLAVFSEMTQRGLVPDVVTFTS 298

Query: 206 LATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELP 265
           L  A   A     A   V  + +     N  T   LI   G+  KG  L+     V+E+ 
Sbjct: 299 LIHATCKAGNLEQAVALVAQMRERGLRMNEVTFTALI--DGFCKKGF-LDDALLAVEEMR 355

Query: 266 NVRSKSYVLA----IEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFID 321
               +  V+     I  + ++ ++  A EL  EM++ +       Y+++IS YCK G +D
Sbjct: 356 KCGIQPSVVCYNALINGYCKLGRMDLARELIREMEAKRVKPDVVTYSTIISGYCKVGNLD 415

Query: 322 KASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWL 381
            A  L ++M   G  P+AITY  L  G     L EE  K L    +L          P  
Sbjct: 416 SAFQLNQKMLKKGVLPDAITYSSLIRG-----LCEE--KRLNDACELFENMLQLGVQPDE 468

Query: 382 ETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKA 429
            T  ++I+   ++G+V  A +L +E+ +         Y+ LI    K+
Sbjct: 469 FTYTTLIDGHCKEGNVEKALSLHDEMIRKGVLPDVVTYSVLINGLSKS 516



 Score = 52.8 bits (125), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 70/346 (20%), Positives = 133/346 (38%), Gaps = 19/346 (5%)

Query: 98  YNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMK 157
           YN L+      G +  SL    +M   G     + F  LI      G  +    ++ QM+
Sbjct: 261 YNTLLSGYCKVGCLHESLAVFSEMTQRGLVPDVVTFTSLIHATCKAGNLEQAVALVAQMR 320

Query: 158 ADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYT 217
              +  +  TF  L+        ++  +    +M++  ++P+ V Y  L   +       
Sbjct: 321 ERGLRMNEVTFTALIDGFCKKGFLDDALLAVEEMRKCGIQPSVVCYNALINGYCKLGRMD 380

Query: 218 VAETYVEALEKSMTGNNWSTLDVLIILY---GYLAKGKDLERIWATVQELPNVRSKSYVL 274
           +A   +  +E      +  T   +I  Y   G L     L +       LP+  + +Y  
Sbjct: 381 LARELIREMEAKRVKPDVVTYSTIISGYCKVGNLDSAFQLNQKMLKKGVLPD--AITYSS 438

Query: 275 AIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNG 334
            I       +++ A EL+  M  +        Y ++I  +CK G ++KA  L  EM   G
Sbjct: 439 LIRGLCEEKRLNDACELFENMLQLGVQPDEFTYTTLIDGHCKEGNVEKALSLHDEMIRKG 498

Query: 335 CKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPW-----------LET 383
             P+ +TY  L  G  KS   +E  + L    KL     V  +  +            ++
Sbjct: 499 VLPDVVTYSVLINGLSKSARTKEAHRLL---FKLYHEDPVPDNIKYDALMLCCSKAEFKS 555

Query: 384 TLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKA 429
            +++++ F  KG +  A+ +++ +   N+     VY+ LI  + + 
Sbjct: 556 VVALLKGFCMKGLMKEADKVYQSMLDRNWKLDGSVYSILIHGHCRG 601



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 75/379 (19%), Positives = 159/379 (41%), Gaps = 37/379 (9%)

Query: 53  IRERPYRPKELDYSYLLEFTIKNHGISQGEKLFCCIPKD--YQNELLYNNLVIACLDKGV 110
           + +R   P  + ++ L+  T K   + Q   L   + +     NE+ +  L+     KG 
Sbjct: 284 MTQRGLVPDVVTFTSLIHATCKAGNLEQAVALVAQMRERGLRMNEVTFTALIDGFCKKGF 343

Query: 111 IKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHI 170
           +  +L  +++MR  G   S + +N LI      GR      ++R+M+A +V P V T+  
Sbjct: 344 LDDALLAVEEMRKCGIQPSVVCYNALINGYCKLGRMDLARELIREMEAKRVKPDVVTYST 403

Query: 171 LMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAV-ARLYTVAETYVEALEKS 229
           ++       N++   ++   M +  V P+ ++Y  L        RL    E +   L+  
Sbjct: 404 IISGYCKVGNLDSAFQLNQKMLKKGVLPDAITYSSLIRGLCEEKRLNDACELFENMLQLG 463

Query: 230 MTGNNWSTLDVLIILYGYLAKGKDLERIWATVQE------LPNVRSKSYVLAIEAFGRIA 283
           +  + ++      ++ G+  +G ++E+  +   E      LP+V   +Y + I    + A
Sbjct: 464 VQPDEFT---YTTLIDGHCKEG-NVEKALSLHDEMIRKGVLPDV--VTYSVLINGLSKSA 517

Query: 284 QVSRAEELWLEM------------QSVKQLKATEQYNSVISV---YCKNGFIDKASGLLK 328
           +   A  L  ++             ++    +  ++ SV+++   +C  G + +A  + +
Sbjct: 518 RTKEAHRLLFKLYHEDPVPDNIKYDALMLCCSKAEFKSVVALLKGFCMKGLMKEADKVYQ 577

Query: 329 EMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSII 388
            M     K +   Y  L  G  +   V    KAL    +++ +    +ST    +T+S++
Sbjct: 578 SMLDRNWKLDGSVYSILIHGHCRGGNVR---KALSFHKQMLRSGFSPNST----STISLV 630

Query: 389 EIFAEKGDVGNAENLFEEL 407
               E+G V  A+N  ++L
Sbjct: 631 RGLFEEGMVVEADNAIQDL 649


>gi|224083253|ref|XP_002306972.1| predicted protein [Populus trichocarpa]
 gi|222856421|gb|EEE93968.1| predicted protein [Populus trichocarpa]
          Length = 709

 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 84/361 (23%), Positives = 160/361 (44%), Gaps = 24/361 (6%)

Query: 97  LYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQM 156
           L N++++     G +  +LE++  ++  G S+       +I    + GR      I  +M
Sbjct: 272 LSNDIIVGFAKAGDLSKALEFLGVVQGSGLSVKTATLVAVIWALGNCGRTVEAEAIFEEM 331

Query: 157 KADKVAPHVSTFHILMKIEANDHNIEGLMK----VYSDMKRSEVEPNEVSYCILATAHAV 212
           + + + P    ++ L++     +   GL+K    V S+M+RS V PNE +Y  L  A+  
Sbjct: 332 RDNGLKPRTRAYNALLR----GYVKAGLLKDAEFVVSEMERSGVSPNEQTYSFLIDAYGN 387

Query: 213 ARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPN--VRSK 270
           A  +  A   ++ +E S    N        IL  Y  KG + ++ +  ++E+ N  VR  
Sbjct: 388 AGRWESARIVLKEMEASNVQPNAYVFSR--ILSSYRDKG-EWQKSFQVLREMENSGVRPD 444

Query: 271 S--YVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLK 328
              Y + I+ FG+   +  A   +  M S      T  +N++I  +C+ G  D+A  L +
Sbjct: 445 RVFYNVMIDTFGKFNCLDHAMATFDRMLSEGIEPDTVTWNTLIDCHCRAGKHDRAEELFE 504

Query: 329 EMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSII 388
           EM   G  P   T+ ++ +  F      +  K       L+   + +   P   T  ++I
Sbjct: 505 EMMEGGYSPCNTTF-NIMINSFGDQERWDDVK------NLLAHMRSQGLVPNSVTYTTLI 557

Query: 389 EIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKINDPNL--LRRMILGGAR 446
           +I+ + G   +A    +++K A     + +YN LI AY +  +++  +   R M + G +
Sbjct: 558 DIYGKSGRFNDAIECLDDMKAAGLKPSSTMYNALINAYAQRGLSEQAVSAFRAMRVDGLK 617

Query: 447 P 447
           P
Sbjct: 618 P 618



 Score = 80.9 bits (198), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 84/419 (20%), Positives = 177/419 (42%), Gaps = 51/419 (12%)

Query: 53  IRERPYRPKELDYSYLLEFTIKNHGISQGEKLFCCIPKD--YQNELLYNNLVIACLDKGV 110
           +R+   +P+   Y+ LL   +K   +   E +   + +     NE  Y+ L+ A  + G 
Sbjct: 331 MRDNGLKPRTRAYNALLRGYVKAGLLKDAEFVVSEMERSGVSPNEQTYSFLIDAYGNAGR 390

Query: 111 IKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHI 170
            + +   +K+M       +  VF+R++      G  +    +LR+M+   V P    +++
Sbjct: 391 WESARIVLKEMEASNVQPNAYVFSRILSSYRDKGEWQKSFQVLREMENSGVRPDRVFYNV 450

Query: 171 LMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSM 230
           ++      + ++  M  +  M    +EP+ V++  L   H  A  +  AE   E + +  
Sbjct: 451 MIDTFGKFNCLDHAMATFDRMLSEGIEPDTVTWNTLIDCHCRAGKHDRAEELFEEMMEGG 510

Query: 231 TGNNWSTLDVLIILYGYLAKGKDLERIWATVQE---LPNVRSKSYVLAIEAFGRIAQVSR 287
                +T +++I  +G   +  D++ + A ++    +PN  S +Y   I+ +G+  + + 
Sbjct: 511 YSPCNTTFNIMINSFGDQERWDDVKNLLAHMRSQGLVPN--SVTYTTLIDIYGKSGRFND 568

Query: 288 AEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLAL 347
           A E   +M++     ++  YN++I+ Y + G  ++A    + M ++G KP+      LAL
Sbjct: 569 AIECLDDMKAAGLKPSSTMYNALINAYAQRGLSEQAVSAFRAMRVDGLKPSL-----LAL 623

Query: 348 GCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEEL 407
                                                 S+I  F E      A  + + +
Sbjct: 624 N-------------------------------------SLINAFGEDRRDAEAFTVLQYM 646

Query: 408 KKANYTKYTFVYNTLIKAYVKAKIND--PNLLRRMILGGARPDAETYSLLKLAEQFQKK 464
           K+ +       Y TL+KA ++ +  D  P++   MIL G  PD +  ++L+ A ++ K+
Sbjct: 647 KENDLKPDVVTYTTLMKALIRVEKFDKVPSVYEEMILSGCTPDRKARAMLRSALKYMKQ 705



 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 104/464 (22%), Positives = 197/464 (42%), Gaps = 55/464 (11%)

Query: 18  MREGFPVHRGEIFHSINRLRKLQLNKR----ALEVMEWVIRERPYRPKELDYSYLLEFTI 73
           + E + V  G ++HS+  L+ L  +      A  V+ W+ +        L +SY L ++I
Sbjct: 122 LAESYRVVPGPLWHSL--LKSLCTSSSSIGLAYAVVLWLQKH------NLCFSYELLYSI 173

Query: 74  KNHGISQGEKL---FCCIPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISY 130
             H + Q EKL   F    +     L YN L+ AC     ++ +L  + +MR  G+   +
Sbjct: 174 LIHALGQSEKLYEAFLLSQRQNLTPLTYNALISACARNNDLEKALNLITRMRQDGYPSDF 233

Query: 131 LVFNRLI--ILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVY 188
           + ++ +I  ++  +      +  + R+++ DK+          + ++ ++  I G  K  
Sbjct: 234 VNYSLIIRSLMRKNRVDSAILQKLYREIECDKLE---------LDVQLSNDIIVGFAKAG 284

Query: 189 SDMKRSE----VEPNEVSYCILATAHAVARLYTVAE----TYVEALEKSMTGNNWS--TL 238
              K  E    V+ + +S   + TA  VA ++ +         EA+ + M  N     T 
Sbjct: 285 DLSKALEFLGVVQGSGLS---VKTATLVAVIWALGNCGRTVEAEAIFEEMRDNGLKPRTR 341

Query: 239 DVLIILYGYLAKG--KDLERIWATVQE---LPNVRSKSYVLAIEAFGRIAQVSRAEELWL 293
               +L GY+  G  KD E + + ++     PN   ++Y   I+A+G   +   A  +  
Sbjct: 342 AYNALLRGYVKAGLLKDAEFVVSEMERSGVSPN--EQTYSFLIDAYGNAGRWESARIVLK 399

Query: 294 EMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSN 353
           EM++         ++ ++S Y   G   K+  +L+EM  +G +P+ + Y ++ +  F   
Sbjct: 400 EMEASNVQPNAYVFSRILSSYRDKGEWQKSFQVLREMENSGVRPDRVFY-NVMIDTFGK- 457

Query: 354 LVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYT 413
                F  L+  M            P   T  ++I+     G    AE LFEE+ +  Y+
Sbjct: 458 -----FNCLDHAMATFDRMLSEGIEPDTVTWNTLIDCHCRAGKHDRAEELFEEMMEGGYS 512

Query: 414 KYTFVYNTLIKAYVKAKINDP--NLLRRMILGGARPDAETYSLL 455
                +N +I ++   +  D   NLL  M   G  P++ TY+ L
Sbjct: 513 PCNTTFNIMINSFGDQERWDDVKNLLAHMRSQGLVPNSVTYTTL 556


>gi|222635128|gb|EEE65260.1| hypothetical protein OsJ_20463 [Oryza sativa Japonica Group]
          Length = 1443

 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 77/335 (22%), Positives = 147/335 (43%), Gaps = 24/335 (7%)

Query: 132 VFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEG--LMKVYS 189
           VFN ++ + +  GR      +L  M+   + P + +F+ L+   A    +     +++  
Sbjct: 223 VFNAMMGVYARSGRFDDARQLLDAMRDQDIEPDLVSFNTLINARAKSGCLAAGVALELLH 282

Query: 190 DMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLA 249
           +++++ + P+ ++Y  L +A +       A    E +  S    +  T + ++ ++G   
Sbjct: 283 EVRQAGLRPDAITYNTLISACSQGSNLDDAVAVFEEMIASECRPDLWTYNAMVSVHGRCG 342

Query: 250 KGKDLERIWATVQE---LPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQ 306
           K ++ E ++  + E    P+  + +Y   + AF +   V R E +  E+      K    
Sbjct: 343 KAQEAELMFKELVEKGFQPD--AVTYNSLLYAFAKEGDVERVERVCEELVKAGFRKDGIT 400

Query: 307 YNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALE--- 363
           YN++I +Y K G +D A GL  EM   GC P+A+TY  L     K + + E  K LE   
Sbjct: 401 YNTMIHMYGKMGRLDLALGLYDEMRAIGCTPDAVTYTVLVDSLGKMDRISEAGKVLEEMA 460

Query: 364 -LGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTL 422
             G+K           P L T  ++I  +A+ G   +AE  F+ + ++        Y  +
Sbjct: 461 DAGLK-----------PTLVTFSALICAYAKSGRQDDAERTFDRMVESGVKPDRLAYLVM 509

Query: 423 IKAYVKAKINDP--NLLRRMILGGARPDAETYSLL 455
           +  + ++        L R MI  G +PD   Y +L
Sbjct: 510 LDVFARSDETRKLMVLYRAMIKDGYKPDDGLYQVL 544



 Score = 43.1 bits (100), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 59/315 (18%), Positives = 127/315 (40%), Gaps = 14/315 (4%)

Query: 144  GRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSY 203
            GR   +  ++++++   +    ST  ++++  A   ++  +MK+Y+ MK +   PN   Y
Sbjct: 831  GRLDELYVVVQELQDLDIKISKSTVLLMLEAFAKAGDVFEVMKIYNGMKAAGYLPNMHLY 890

Query: 204  CILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQE 263
             I+ +     + +   E  V  +E +    +   L+ L+++Y           ++ ++ E
Sbjct: 891  RIMISLLCHNKRFRDVELMVAEMEGAGFKPDLVVLNTLLLMYTGTGNFDRTIEVYHSILE 950

Query: 264  L---PNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFI 320
                P+    +Y   I  + R  +      L  EM         E Y  +++   K    
Sbjct: 951  AGLEPD--EDTYNTLIVMYSRNFRPEEGFTLLYEMGKRGLTPKLESYKILLAASGKAKLW 1008

Query: 321  DKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPW 380
            ++A  L +EM   G + N   Y H+ +  +++       +       L++  K     P 
Sbjct: 1009 EQADLLFEEMRTKGYRLNRSIY-HMMMKIYRNA------RNHSKAEHLLSAMKEDGIEPT 1061

Query: 381  LETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKINDPNL--LR 438
            + T   ++  +   G    AE +   LK +N    T  Y+T++ AY++ +     +  L 
Sbjct: 1062 IATMHILMTSYGTSGHPDEAEKVLNSLKSSNLEISTLPYSTVLDAYLRNRDYSLGITKLL 1121

Query: 439  RMILGGARPDAETYS 453
             M   G  PD + ++
Sbjct: 1122 EMKRDGVEPDHQVWT 1136



 Score = 42.4 bits (98), Expect = 0.54,   Method: Compositional matrix adjust.
 Identities = 47/225 (20%), Positives = 98/225 (43%), Gaps = 9/225 (4%)

Query: 47  EVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQGEKLFCCIPKD--YQNELLYNNLVIA 104
           E+M   + E+ ++P  + Y+ LL    K   + + E++   + K    ++ + YN ++  
Sbjct: 348 ELMFKELVEKGFQPDAVTYNSLLYAFAKEGDVERVERVCEELVKAGFRKDGITYNTMIHM 407

Query: 105 CLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPH 164
               G + L+L    +MR +G +   + +  L+       R      +L +M    + P 
Sbjct: 408 YGKMGRLDLALGLYDEMRAIGCTPDAVTYTVLVDSLGKMDRISEAGKVLEEMADAGLKPT 467

Query: 165 VSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETY-V 223
           + TF  L+   A     +   + +  M  S V+P+ ++Y ++    A +      ET  +
Sbjct: 468 LVTFSALICAYAKSGRQDDAERTFDRMVESGVKPDRLAYLVMLDVFARSD-----ETRKL 522

Query: 224 EALEKSMTGNNWSTLDVLI-ILYGYLAKGKDLERIWATVQELPNV 267
             L ++M  + +   D L  +L   LAKG + + I   +Q++  V
Sbjct: 523 MVLYRAMIKDGYKPDDGLYQVLLAALAKGNEHDEIEGVIQDMEAV 567



 Score = 38.9 bits (89), Expect = 5.3,   Method: Compositional matrix adjust.
 Identities = 23/103 (22%), Positives = 51/103 (49%)

Query: 119  KKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEAND 178
            ++MR  G+ ++  +++ ++ +  +        ++L  MK D + P ++T HILM      
Sbjct: 1016 EEMRTKGYRLNRSIYHMMMKIYRNARNHSKAEHLLSAMKEDGIEPTIATMHILMTSYGTS 1075

Query: 179  HNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAET 221
             + +   KV + +K S +E + + Y  +  A+   R Y++  T
Sbjct: 1076 GHPDEAEKVLNSLKSSNLEISTLPYSTVLDAYLRNRDYSLGIT 1118


>gi|255548724|ref|XP_002515418.1| pentatricopeptide repeat-containing protein, putative [Ricinus
            communis]
 gi|223545362|gb|EEF46867.1| pentatricopeptide repeat-containing protein, putative [Ricinus
            communis]
          Length = 1113

 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 77/311 (24%), Positives = 135/311 (43%), Gaps = 16/311 (5%)

Query: 151  NILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCI----L 206
            N+  +MK    AP V T+++L+        I  L ++Y  M  S  +PN +++ I    L
Sbjct: 811  NLFTEMKNAGCAPDVFTYNLLLDAHGKSGKINELFELYEQMICSSCKPNTITHNIIIANL 870

Query: 207  ATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPN 266
              ++++ +   +    V   + S T   +  L   ++  G L + K+L          PN
Sbjct: 871  VKSNSLDKALDLFYDLVSG-DFSPTPCTYGPLLDGLLKSGRLEEAKELFEEMVDYGCRPN 929

Query: 267  VRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGL 326
              +  Y + I  FG+   V+ A EL+  M         + Y S++   C+ G +D A   
Sbjct: 930  --NAIYNILINGFGKTGDVNTACELFKRMVREGIRPDLKSYTSLVGCLCEAGRVDDALHY 987

Query: 327  LKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLS 386
             +++   G   ++I Y  +  G  +S+ +EE        + L    + R   P L T  S
Sbjct: 988  FEKLKQTGLYLDSIAYNLMIDGLGRSHRIEEA-------LTLYDEMQSRGINPDLFTYNS 1040

Query: 387  IIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKINDP--NLLRRMILGG 444
            +I      G V  A  L+EEL+        F YN LI+ Y  +  +D    + +RM++GG
Sbjct: 1041 LILNLGVAGMVEQAGKLYEELQFIGLEPNVFTYNALIRGYSMSGNSDSAYAVYKRMMVGG 1100

Query: 445  ARPDAETYSLL 455
              P+  T++ L
Sbjct: 1101 CSPNTGTFAQL 1111



 Score = 75.5 bits (184), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 83/364 (22%), Positives = 138/364 (37%), Gaps = 39/364 (10%)

Query: 120 KMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDH 179
           KMR  G  ++   +N LI L    G  +    + R+M  + + P + TF  LM       
Sbjct: 184 KMREAGFHLNAYSYNGLIHLLLQSGLCREALEMYRRMVLEGLKPSLKTFSALMVATGKRR 243

Query: 180 NIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLD 239
           + E +  +  +M+   ++PN  +Y I       A     A   ++ +E    G +  T  
Sbjct: 244 DTETVKSLLEEMESLGLKPNIYTYTICIRVLGRAGRIDEACRIMKRMEDDGCGPDVVTYT 303

Query: 240 VLIILYGYLAKGKDLERIWATVQELPNVRSK-SYVLAIEAFGRIAQVSRAEELWLEMQSV 298
           VLI       K  D   ++  ++   +   + +Y+  ++ F     + R +E W EM++ 
Sbjct: 304 VLIDALCTAGKLDDAMELFVKMKASSHKPDRVTYITMLDKFSDCGDLGRVKEFWSEMEAD 363

Query: 299 KQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEG 358
                   +  +++  CK G ID+A  LL  M   G  PN  TY  L  G  + N +++ 
Sbjct: 364 GYAPDVITFTILVNALCKAGNIDEAFHLLDVMRKQGVLPNLHTYNTLISGLLRVNRLDDA 423

Query: 359 F--------------------------------KALELGMKLITTKKVRSSTPWLETTLS 386
                                            KALE   K+    K+R   P +    +
Sbjct: 424 LDLFNNMETLGVVPTAYTYILFIDFYGKSGRSDKALETFEKM----KIRGIAPNIVACNA 479

Query: 387 IIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKINDP--NLLRRMILGG 444
            +   AE G +  A+ +F  LK       +  YN ++K Y KA   D    LL  M    
Sbjct: 480 SLYSLAEMGRLREAKVIFNRLKSNGLAPDSVTYNMMMKCYSKAGQVDEAIELLSDMSENQ 539

Query: 445 ARPD 448
             PD
Sbjct: 540 CEPD 543



 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 98/423 (23%), Positives = 172/423 (40%), Gaps = 56/423 (13%)

Query: 78  ISQGEKLFCCIPKDYQ---NELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFN 134
           + +  K+FC + KD +     + YN L+     +G ++ ++E    M   G   + + FN
Sbjct: 560 VDEAWKMFCRL-KDMKLAPTVVTYNTLIAGLGKEGQVQRAMELFASMTGNGCPPNTITFN 618

Query: 135 RLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRS 194
            ++              +L +M      P V TF+ ++     +  +   + ++  MK+ 
Sbjct: 619 TILDCLCKNDEVDLALKMLYKMTTMNCMPDVLTFNTIIHGLVIEKRVSDAIWLFHQMKKM 678

Query: 195 EVEPNEVSYCILATAHAVARL----YTVAETYVEALEKSMTGNNWSTLDVLI-------- 242
            + P+ V+ C L        L    + +AE +V  L   +    W  L   I        
Sbjct: 679 -LTPDCVTLCTLLPGVVKNGLMEDAFKIAEDFVHRLGVYVDRRFWEDLMGGILTQAGTEK 737

Query: 243 -ILYG-YLAKG---KDLERIWATVQELPNVRS---------------------KSYVLAI 276
            IL+G  L  G   KD   +   ++ L   +                      +SY   I
Sbjct: 738 TILFGDRLVCGRVCKDGSVLMPIIKVLCKHKQALVAQSVFIRFTKELGVKPTLESYNFLI 797

Query: 277 EAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCK 336
           E F  +     A  L+ EM++         YN ++  + K+G I++   L ++M  + CK
Sbjct: 798 EGFLGVHNDEMAWNLFTEMKNAGCAPDVFTYNLLLDAHGKSGKINELFELYEQMICSSCK 857

Query: 337 PNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGD 396
           PN IT+  +     KSN ++   KAL+L   L++     S TP   T   +++   + G 
Sbjct: 858 PNTITHNIIIANLVKSNSLD---KALDLFYDLVSGD--FSPTPC--TYGPLLDGLLKSGR 910

Query: 397 VGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKINDPN----LLRRMILGGARPDAETY 452
           +  A+ LFEE+          +YN LI  +   K  D N    L +RM+  G RPD ++Y
Sbjct: 911 LEEAKELFEEMVDYGCRPNNAIYNILINGF--GKTGDVNTACELFKRMVREGIRPDLKSY 968

Query: 453 SLL 455
           + L
Sbjct: 969 TSL 971



 Score = 64.7 bits (156), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 65/300 (21%), Positives = 120/300 (40%), Gaps = 15/300 (5%)

Query: 58  YRPKELDYSYLLEFTIKNHGISQGEKLFCCIPKD--YQNELLYNNLVIACLDKGVIKLSL 115
           Y P  + ++ L+    K   I +   L   + K     N   YN L+   L    +  +L
Sbjct: 365 YAPDVITFTILVNALCKAGNIDEAFHLLDVMRKQGVLPNLHTYNTLISGLLRVNRLDDAL 424

Query: 116 EYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIE 175
           +    M  LG   +   +   I      GR         +MK   +AP++   +  +   
Sbjct: 425 DLFNNMETLGVVPTAYTYILFIDFYGKSGRSDKALETFEKMKIRGIAPNIVACNASLYSL 484

Query: 176 ANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEK-SMTGNN 234
           A    +     +++ +K + + P+ V+Y      + + + Y+ A    EA+E  S    N
Sbjct: 485 AEMGRLREAKVIFNRLKSNGLAPDSVTY------NMMMKCYSKAGQVDEAIELLSDMSEN 538

Query: 235 WSTLDVLII--LYGYLAKGKDLERIWATVQELPNVRSKSYVLA----IEAFGRIAQVSRA 288
               D+++I  L   L K   ++  W     L +++    V+     I   G+  QV RA
Sbjct: 539 QCEPDIIVINSLINTLYKAGRVDEAWKMFCRLKDMKLAPTVVTYNTLIAGLGKEGQVQRA 598

Query: 289 EELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALG 348
            EL+  M        T  +N+++   CKN  +D A  +L +M+   C P+ +T+  +  G
Sbjct: 599 MELFASMTGNGCPPNTITFNTILDCLCKNDEVDLALKMLYKMTTMNCMPDVLTFNTIIHG 658



 Score = 60.1 bits (144), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 86/409 (21%), Positives = 159/409 (38%), Gaps = 84/409 (20%)

Query: 94  NELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNIL 153
           N   YN L+   L  G+ + +LE  ++M + G   S   F+ L++        +T+ ++L
Sbjct: 193 NAYSYNGLIHLLLQSGLCREALEMYRRMVLEGLKPSLKTFSALMVATGKRRDTETVKSLL 252

Query: 154 RQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVA 213
            +M++  + P++ T+ I +++      I+   ++   M+     P+ V+Y +L  A   A
Sbjct: 253 EEMESLGLKPNIYTYTICIRVLGRAGRIDEACRIMKRMEDDGCGPDVVTYTVLIDALCTA 312

Query: 214 -RLYTVAE---------------TYVEALEK-SMTGN------NWSTLD---------VL 241
            +L    E               TY+  L+K S  G+       WS ++           
Sbjct: 313 GKLDDAMELFVKMKASSHKPDRVTYITMLDKFSDCGDLGRVKEFWSEMEADGYAPDVITF 372

Query: 242 IILYGYLAKGKDLERIWATVQE------LPNVRSKSYVLAIEAFGRIAQVSRAEELWLEM 295
            IL   L K  +++  +  +        LPN+ +  Y   I    R+ ++  A +L+  M
Sbjct: 373 TILVNALCKAGNIDEAFHLLDVMRKQGVLPNLHT--YNTLISGLLRVNRLDDALDLFNNM 430

Query: 296 QSVKQLKATEQYNSVISVYCKNGFIDKA----------------------------SGLL 327
           +++  +     Y   I  Y K+G  DKA                             G L
Sbjct: 431 ETLGVVPTAYTYILFIDFYGKSGRSDKALETFEKMKIRGIAPNIVACNASLYSLAEMGRL 490

Query: 328 KE-------MSMNGCKPNAITYRHLALGCF-KSNLVEEGFKALELGMKLITTKKVRSSTP 379
           +E       +  NG  P+++TY ++ + C+ K+  V+E        ++L++        P
Sbjct: 491 REAKVIFNRLKSNGLAPDSVTY-NMMMKCYSKAGQVDEA-------IELLSDMSENQCEP 542

Query: 380 WLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVK 428
            +    S+I    + G V  A  +F  LK          YNTLI    K
Sbjct: 543 DIIVINSLINTLYKAGRVDEAWKMFCRLKDMKLAPTVVTYNTLIAGLGK 591



 Score = 47.0 bits (110), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 66/297 (22%), Positives = 120/297 (40%), Gaps = 19/297 (6%)

Query: 60   PKELDYSYLLEFTIKNHGISQ----GEKLFC--CIPKDYQNELLYNNLVIA-CLDKGVIK 112
            P    Y+ LL+   K+  I++     E++ C  C P    + ++  NLV +  LDK    
Sbjct: 823  PDVFTYNLLLDAHGKSGKINELFELYEQMICSSCKPNTITHNIIIANLVKSNSLDK---- 878

Query: 113  LSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILM 172
             +L+    +     S +   +  L+      GR +    +  +M      P+ + ++IL+
Sbjct: 879  -ALDLFYDLVSGDFSPTPCTYGPLLDGLLKSGRLEEAKELFEEMVDYGCRPNNAIYNILI 937

Query: 173  KIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTG 232
                   ++    +++  M R  + P+  SY  L      A     A  Y E L++  TG
Sbjct: 938  NGFGKTGDVNTACELFKRMVREGIRPDLKSYTSLVGCLCEAGRVDDALHYFEKLKQ--TG 995

Query: 233  NNWSTLDVLIILYGYLAKGKDLERIWATVQELP----NVRSKSYVLAIEAFGRIAQVSRA 288
                ++   +++ G L +   +E       E+     N    +Y   I   G    V +A
Sbjct: 996  LYLDSIAYNLMIDG-LGRSHRIEEALTLYDEMQSRGINPDLFTYNSLILNLGVAGMVEQA 1054

Query: 289  EELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHL 345
             +L+ E+Q +        YN++I  Y  +G  D A  + K M + GC PN  T+  L
Sbjct: 1055 GKLYEELQFIGLEPNVFTYNALIRGYSMSGNSDSAYAVYKRMMVGGCSPNTGTFAQL 1111


>gi|147859909|emb|CAN83144.1| hypothetical protein VITISV_040783 [Vitis vinifera]
          Length = 724

 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 110/501 (21%), Positives = 217/501 (43%), Gaps = 49/501 (9%)

Query: 1   IERLPRGEPVGSAFQSWMREGF-PVHRGEIFHSINRLRKLQLNKRALEVMEWVIRERPYR 59
           I  L R E +  AF    R+   P+    +  +  R   L+   +AL +M  + R+  Y 
Sbjct: 232 IHALGRSEKLYEAFLLSQRQTLTPLTYNALIGACARNDDLE---KALNLMSRMRRDG-YP 287

Query: 60  PKELDYSYLLEFTIKNH--GISQGEKLFCCIPKDYQNEL---LYNNLVIACLDKGVIKLS 114
              ++YS++++   + +    S  +K++  I  D + EL   L N++++     G +  +
Sbjct: 288 SDFVNYSFIIQSLTRTNKSDSSMLQKIYAEIESD-KIELDGQLLNDIIVGFAKSGDVNRA 346

Query: 115 LEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKI 174
           + ++  ++  G S        +I    + GR +    I  ++K   + P    ++ L+K 
Sbjct: 347 MSFLAMVQGNGLSPKTATLVAVITALGNAGRTEEAEAIFEELKEGGLMPRTRAYNALLKG 406

Query: 175 EANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNN 234
                +++    + S+M+RS   P+E +Y +L  A+A A  +  A   ++ +E S    N
Sbjct: 407 YVKTGSLKDAESIVSEMERSGFSPDEHTYSLLIDAYANAGRWESARIVLKEMEASGVRPN 466

Query: 235 WSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSKS----YVLAIEAFGRIAQVSRAEE 290
                   IL  Y  +GK  ++ +  ++E+ N         Y + I+ FG+   +  A  
Sbjct: 467 SYVFSR--ILASYRDRGK-WQKSFQVLREMRNSGVSPDRHFYNVMIDTFGKCNCLDHALA 523

Query: 291 LW--LEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLA-- 346
            +  + M+ V+    T  +N++I  +CK+G  +KA  L + M  +GC P   TY  +   
Sbjct: 524 TFDRMRMEGVQPDAVT--WNTLIDCHCKSGHHNKAEELFEAMQESGCSPCTTTYNIMINS 581

Query: 347 -------------LGCFKS-----NLVEEGFKALELGMKLITTKKVRSSTPWLETTL--- 385
                        LG  +S     N+V   +  L L  + I   +V  +     + L   
Sbjct: 582 FGEQERWEDVKTLLGKMQSQGLLANVVT--YTTLGLSEQAINAFRVMRADGLKPSVLVLN 639

Query: 386 SIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKIND--PNLLRRMILG 443
           S+I  F E      A ++ + +K+ +       Y TL+KA ++ +  D  P +   M L 
Sbjct: 640 SLINAFGEDRRDAEAFSVLQYMKENDLKPDVVTYTTLMKALIRVEKFDKVPAVYEEMTLS 699

Query: 444 GARPDAETYSLLKLAEQFQKK 464
           G  PD +  ++L+ A ++ ++
Sbjct: 700 GCTPDRKARAMLRSALRYMER 720



 Score = 69.3 bits (168), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 94/428 (21%), Positives = 186/428 (43%), Gaps = 29/428 (6%)

Query: 45  ALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQGEKL---FCCIPKDYQNELLYNNL 101
           A  ++ W+ R        L +SY L ++I  H + + EKL   F    +     L YN L
Sbjct: 208 AYSLVTWLERH------NLCFSYELLYSILIHALGRSEKLYEAFLLSQRQTLTPLTYNAL 261

Query: 102 VIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLI--ILNSSPGRRKTIPNILRQMKAD 159
           + AC     ++ +L  M +MR  G+   ++ ++ +I  +  ++      +  I  ++++D
Sbjct: 262 IGACARNDDLEKALNLMSRMRRDGYPSDFVNYSFIIQSLTRTNKSDSSMLQKIYAEIESD 321

Query: 160 KVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVA 219
           K+       + ++   A   ++   M   + ++ + + P   +   + TA   A     A
Sbjct: 322 KIELDGQLLNDIIVGFAKSGDVNRAMSFLAMVQGNGLSPKTATLVAVITALGNAGRTEEA 381

Query: 220 ETYVEALEKSMTGNNWSTLDVLIILYGYLAKG--KDLERIWATVQELP-NVRSKSYVLAI 276
           E   E L++   G    T     +L GY+  G  KD E I + ++    +    +Y L I
Sbjct: 382 EAIFEELKEG--GLMPRTRAYNALLKGYVKTGSLKDAESIVSEMERSGFSPDEHTYSLLI 439

Query: 277 EAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCK 336
           +A+    +   A  +  EM++      +  ++ +++ Y   G   K+  +L+EM  +G  
Sbjct: 440 DAYANAGRWESARIVLKEMEASGVRPNSYVFSRILASYRDRGKWQKSFQVLREMRNSGVS 499

Query: 337 PNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVR--SSTPWLETTLSIIEIFAEK 394
           P+    RH     F + +++   K   L   L T  ++R     P   T  ++I+   + 
Sbjct: 500 PD----RH-----FYNVMIDTFGKCNCLDHALATFDRMRMEGVQPDAVTWNTLIDCHCKS 550

Query: 395 GDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKI--NDPNLLRRMILGGARPDAETY 452
           G    AE LFE ++++  +  T  YN +I ++ + +   +   LL +M   G   +  TY
Sbjct: 551 GHHNKAEELFEAMQESGCSPCTTTYNIMINSFGEQERWEDVKTLLGKMQSQGLLANVVTY 610

Query: 453 SLLKLAEQ 460
           + L L+EQ
Sbjct: 611 TTLGLSEQ 618


>gi|222612845|gb|EEE50977.1| hypothetical protein OsJ_31558 [Oryza sativa Japonica Group]
          Length = 1263

 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 87/361 (24%), Positives = 160/361 (44%), Gaps = 16/361 (4%)

Query: 94  NELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNIL 153
           N   YN LV   +  G  + +LE  + M V G   S   ++ L++   + G+R+ +  +L
Sbjct: 284 NAYTYNGLVYFLVKSGFDREALEVYRVMMVDGVVPSVRTYSVLMV---AFGKRRDVETVL 340

Query: 154 ---RQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAH 210
              R+M+A  V P+V ++ I +++       +   ++ + M+    +P+ +++ +L    
Sbjct: 341 WLLREMEAHGVKPNVYSYTICIRVLGQAKRFDEAYRILAKMENEGCKPDVITHTVLIQVL 400

Query: 211 AVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIW-ATVQELPNVRS 269
             A   + A+     ++KS    +  T   L+  +G     + +  IW A   +  N   
Sbjct: 401 CDAGRISDAKDVFWKMKKSDQKPDRVTYITLLDKFGDNGDSQSVMEIWNAMKADGYNDNV 460

Query: 270 KSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKE 329
            +Y   I+A  ++ +V  A E++ EM+    +     YNS+IS + K      A  L K 
Sbjct: 461 VAYTAVIDALCQVGRVFEALEMFDEMKQKGIVPEQYSYNSLISGFLKADRFGDALELFKH 520

Query: 330 MSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIE 389
           M ++G KPN  T+        KS    E  KA++   +L+ +K +    P +    +++ 
Sbjct: 521 MDIHGPKPNGYTHVLFINYYGKSG---ESIKAIQR-YELMKSKGI---VPDVVAGNAVLF 573

Query: 390 IFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKINDP--NLLRRMILGGARP 447
             A+ G +G A+ +F ELK    +  T  Y  +IK   KA   D    +   MI     P
Sbjct: 574 GLAKSGRLGMAKRVFHELKAMGVSPDTITYTMMIKCCSKASKFDEAVKIFYDMIENNCVP 633

Query: 448 D 448
           D
Sbjct: 634 D 634



 Score = 68.6 bits (166), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 82/340 (24%), Positives = 136/340 (40%), Gaps = 18/340 (5%)

Query: 116  EYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIE 175
            E +KK +  G S+   ++N LI              +  +MK     P   T+++L+   
Sbjct: 866  ELVKKFKSFGVSLKTGLYNSLICGLVDENLIDIAEGLFAEMKELGCGPDEFTYNLLLDAM 925

Query: 176  ANDHNIEGLMKVYSDMKRSEVEPNEVSY-CILATAHAVARLYTVAETYVEALEKSMTGNN 234
                 IE ++KV  +M R   E   V+Y  I++      RL    + Y   + +   G +
Sbjct: 926  GKSMRIEEMLKVQEEMHRKGYESTYVTYNTIISGLVKSRRLEQAIDLYYNLMSQ---GFS 982

Query: 235  WSTLDVLIILYGYLAKGK--DLERIWATVQELPNVRSKSYVLAIEAFG-RIA-QVSRAEE 290
             +      +L G L  G+  D E ++  + E    ++   +  I   G RIA    +   
Sbjct: 983  PTPCTYGPLLDGLLKAGRIEDAENLFNEMLEY-GCKANCTIYNILLNGHRIAGNTEKVCH 1041

Query: 291  LWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCF 350
            L+ +M         + Y  +I   CK G ++      +++   G +P+ ITY  L  G  
Sbjct: 1042 LFQDMVDQGINPDIKSYTIIIDTLCKAGQLNDGLTYFRQLLEMGLEPDLITYNLLIDGLG 1101

Query: 351  KSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKA 410
            KS       K LE  + L    + +   P L T  S+I    + G    A  ++EEL   
Sbjct: 1102 KS-------KRLEEAVSLFNEMQKKGIVPNLYTYNSLILHLGKAGKAAEAGKMYEELLTK 1154

Query: 411  NYTKYTFVYNTLIKAYVKAKINDPNLLR--RMILGGARPD 448
             +    F YN LI+ Y  +   D       RMI+GG  P+
Sbjct: 1155 GWKPNVFTYNALIRGYSVSGSTDSAYAAYGRMIVGGCLPN 1194



 Score = 64.7 bits (156), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 81/370 (21%), Positives = 146/370 (39%), Gaps = 37/370 (10%)

Query: 118 MKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEAN 177
           + KM   G     +    LI +    GR     ++  +MK     P   T+  L+    +
Sbjct: 378 LAKMENEGCKPDVITHTVLIQVLCDAGRISDAKDVFWKMKKSDQKPDRVTYITLLDKFGD 437

Query: 178 DHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHA-VARLYTVAETYVEALEKSMTGNNWS 236
           + + + +M++++ MK      N V+Y  +  A   V R++   E + E  +K +    +S
Sbjct: 438 NGDSQSVMEIWNAMKADGYNDNVVAYTAVIDALCQVGRVFEALEMFDEMKQKGIVPEQYS 497

Query: 237 TLDVLIILYGYLAK---GKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWL 293
                 ++ G+L     G  LE         P     ++VL I  +G+  +  +A + + 
Sbjct: 498 YNS---LISGFLKADRFGDALELFKHMDIHGPKPNGYTHVLFINYYGKSGESIKAIQRYE 554

Query: 294 EMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSN 353
            M+S   +      N+V+    K+G +  A  +  E+   G  P+ ITY  +   C K++
Sbjct: 555 LMKSKGIVPDVVAGNAVLFGLAKSGRLGMAKRVFHELKAMGVSPDTITYTMMIKCCSKAS 614

Query: 354 LVEEGFKALELGMK------------LITT--KKVRSSTPW----------LETTL---- 385
             +E  K     ++            LI T  K  R    W          LE T     
Sbjct: 615 KFDEAVKIFYDMIENNCVPDVLAVNSLIDTLYKAGRGDEAWRIFYQLKEMNLEPTDGTYN 674

Query: 386 SIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVK-AKINDP-NLLRRMILG 443
           +++     +G V    +L EE+  +NY      YNT++    K   +ND  ++L  M   
Sbjct: 675 TLLAGLGREGKVKEVMHLLEEMYHSNYPPNLITYNTILDCLCKNGAVNDALDMLYSMTTK 734

Query: 444 GARPDAETYS 453
           G  PD  +Y+
Sbjct: 735 GCIPDLSSYN 744



 Score = 59.3 bits (142), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 58/276 (21%), Positives = 115/276 (41%), Gaps = 11/276 (3%)

Query: 88  IPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRK 147
           +P+ Y     YN+L+   L       +LE  K M +  H      +  ++ +N      +
Sbjct: 492 VPEQYS----YNSLISGFLKADRFGDALELFKHMDI--HGPKPNGYTHVLFINYYGKSGE 545

Query: 148 TIPNILRQ--MKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCI 205
           +I  I R   MK+  + P V   + ++   A    +    +V+ ++K   V P+ ++Y +
Sbjct: 546 SIKAIQRYELMKSKGIVPDVVAGNAVLFGLAKSGRLGMAKRVFHELKAMGVSPDTITYTM 605

Query: 206 LATAHAVARLYTVA-ETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQEL 264
           +    + A  +  A + + + +E +   +  +   ++  LY    +G +  RI+  ++E+
Sbjct: 606 MIKCCSKASKFDEAVKIFYDMIENNCVPDVLAVNSLIDTLY-KAGRGDEAWRIFYQLKEM 664

Query: 265 P-NVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKA 323
                  +Y   +   GR  +V     L  EM           YN+++   CKNG ++ A
Sbjct: 665 NLEPTDGTYNTLLAGLGREGKVKEVMHLLEEMYHSNYPPNLITYNTILDCLCKNGAVNDA 724

Query: 324 SGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGF 359
             +L  M+  GC P+  +Y  +  G  K     E F
Sbjct: 725 LDMLYSMTTKGCIPDLSSYNTVIYGLVKEERYNEAF 760



 Score = 52.0 bits (123), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 76/395 (19%), Positives = 158/395 (40%), Gaps = 43/395 (10%)

Query: 98   YNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMK 157
            YN L+     +G +K  +  +++M    +  + + +N ++      G      ++L  M 
Sbjct: 673  YNTLLAGLGREGKVKEVMHLLEEMYHSNYPPNLITYNTILDCLCKNGAVNDALDMLYSMT 732

Query: 158  ADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYC-ILATAHAVA--- 213
                 P +S+++ ++     +        ++  MK+  + P+  + C IL +   +    
Sbjct: 733  TKGCIPDLSSYNTVIYGLVKEERYNEAFSIFCQMKKVLI-PDYATLCTILPSFVKIGLMK 791

Query: 214  -RLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSKSY 272
              L+ + + +++   K+   +  S ++ ++   G + K  +   I A+      +    +
Sbjct: 792  EALHIIKDYFLQPGSKTDRSSCHSLMEGILKKAG-IEKSIEFAEIIAS----SGITLDDF 846

Query: 273  VLA--IEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEM 330
             L   I+   +  +   A EL  + +S      T  YNS+I        ID A GL  EM
Sbjct: 847  FLCPLIKHLCKQKKALEAHELVKKFKSFGVSLKTGLYNSLICGLVDENLIDIAEGLFAEM 906

Query: 331  SMNGCKPNAITYRHLALGCFKSNLVEE-----------GFKALELGMKLITTKKVRSS-- 377
               GC P+  TY  L     KS  +EE           G+++  +    I +  V+S   
Sbjct: 907  KELGCGPDEFTYNLLLDAMGKSMRIEEMLKVQEEMHRKGYESTYVTYNTIISGLVKSRRL 966

Query: 378  ---------------TPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTL 422
                           +P   T   +++   + G + +AENLF E+ +        +YN L
Sbjct: 967  EQAIDLYYNLMSQGFSPTPCTYGPLLDGLLKAGRIEDAENLFNEMLEYGCKANCTIYNIL 1026

Query: 423  IKAYVKAKINDP--NLLRRMILGGARPDAETYSLL 455
            +  +  A   +   +L + M+  G  PD ++Y+++
Sbjct: 1027 LNGHRIAGNTEKVCHLFQDMVDQGINPDIKSYTII 1061



 Score = 48.5 bits (114), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 74/337 (21%), Positives = 138/337 (40%), Gaps = 17/337 (5%)

Query: 36   LRKLQLNKRALEVMEWVIRERPY--RPKELDYSYLLEFTIKNHGISQGEKLFC------C 87
            ++ L   K+ALE  E V + + +    K   Y+ L+   +  + I   E LF       C
Sbjct: 852  IKHLCKQKKALEAHELVKKFKSFGVSLKTGLYNSLICGLVDENLIDIAEGLFAEMKELGC 911

Query: 88   IPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRK 147
             P    +E  YN L+ A      I+  L+  ++M   G+  +Y+ +N +I       R +
Sbjct: 912  GP----DEFTYNLLLDAMGKSMRIEEMLKVQEEMHRKGYESTYVTYNTIISGLVKSRRLE 967

Query: 148  TIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILA 207
               ++   + +   +P   T+  L+        IE    ++++M     + N   Y IL 
Sbjct: 968  QAIDLYYNLMSQGFSPTPCTYGPLLDGLLKAGRIEDAENLFNEMLEYGCKANCTIYNILL 1027

Query: 208  TAHAVA-RLYTVAETYVEALEKSMTGN--NWSTLDVLIILYGYLAKGKDLERIWATVQEL 264
              H +A     V   + + +++ +  +  +++ +   +   G L  G    R    +   
Sbjct: 1028 NGHRIAGNTEKVCHLFQDMVDQGINPDIKSYTIIIDTLCKAGQLNDGLTYFRQLLEMGLE 1087

Query: 265  PNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKAS 324
            P++   +Y L I+  G+  ++  A  L+ EMQ    +     YNS+I    K G   +A 
Sbjct: 1088 PDL--ITYNLLIDGLGKSKRLEEAVSLFNEMQKKGIVPNLYTYNSLILHLGKAGKAAEAG 1145

Query: 325  GLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKA 361
             + +E+   G KPN  TY  L  G   S   +  + A
Sbjct: 1146 KMYEELLTKGWKPNVFTYNALIRGYSVSGSTDSAYAA 1182


>gi|168007580|ref|XP_001756486.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162692525|gb|EDQ78882.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 528

 Score = 84.0 bits (206), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 70/294 (23%), Positives = 127/294 (43%), Gaps = 49/294 (16%)

Query: 167 TFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEA- 225
            +++L++       ++  M+++ +MK    EP+E +Y  L  A   A     A ++ +A 
Sbjct: 102 AYNVLIRYFGRSGQLDSAMEMFREMKIKGSEPDEYTYGFLVNALGKAGRVQEARSFFDAM 161

Query: 226 LEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQV 285
           LE+ +T                                 PN+   +Y L ++AF ++ Q+
Sbjct: 162 LERGLT---------------------------------PNI--PTYNLLMDAFRKVGQL 186

Query: 286 SRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHL 345
             A  L+ EM+      +   YN ++   C  G +  A  L  +M+ +GC P++ TY  L
Sbjct: 187 DMALGLFAEMKRRGFQPSVVTYNILLDALCSAGRVGAARKLFHKMTGDGCSPDSYTYSTL 246

Query: 346 ALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFE 405
             G  KS  VEE  K      +++     R     L    S++   A+ G++     L +
Sbjct: 247 VNGLGKSGRVEEAHKVFR---EMVD----RGVAVDLVNYNSLLATLAKAGNMDRVWKLMK 299

Query: 406 ELKKANYTKYTFVYNTLIKAYVKAKINDPNLLR----RMILGGARPDAETYSLL 455
           E+ +  +    F +NT++ A  KA  N P+  R    RM+  G +PD  +Y++L
Sbjct: 300 EMSRKGFHPDAFSFNTIMDALGKA--NKPDAAREVFARMVESGCKPDLISYNIL 351



 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 81/364 (22%), Positives = 151/364 (41%), Gaps = 43/364 (11%)

Query: 94  NELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNIL 153
           +   YN L+      G +  ++E  ++M++ G       +  L+      GR +   +  
Sbjct: 99  DRFAYNVLIRYFGRSGQLDSAMEMFREMKIKGSEPDEYTYGFLVNALGKAGRVQEARSFF 158

Query: 154 RQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVA 213
             M    + P++ T+++LM        ++  + ++++MKR   +P+ V+Y IL  A   A
Sbjct: 159 DAMLERGLTPNIPTYNLLMDAFRKVGQLDMALGLFAEMKRRGFQPSVVTYNILLDALCSA 218

Query: 214 RLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSKSYV 273
                A      L   MTG+  S                            P+  S +Y 
Sbjct: 219 GRVGAARK----LFHKMTGDGCS----------------------------PD--SYTYS 244

Query: 274 LAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMN 333
             +   G+  +V  A +++ EM           YNS+++   K G +D+   L+KEMS  
Sbjct: 245 TLVNGLGKSGRVEEAHKVFREMVDRGVAVDLVNYNSLLATLAKAGNMDRVWKLMKEMSRK 304

Query: 334 GCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAE 393
           G  P+A ++  +     K+N  +    A E+  +++ +       P L +   +I+ +A 
Sbjct: 305 GFHPDAFSFNTIMDALGKANKPD---AAREVFARMVES----GCKPDLISYNILIDSYAR 357

Query: 394 KGDVGNAENLFEELKKANYTKYTFVYNTLIK-AYVKAKINDP-NLLRRMILGGARPDAET 451
            GD   A  + EE+ +A +   T  YN+LI       ++++   +L  M   G RPD  T
Sbjct: 358 FGDAAQARQMLEEMVEAGFIPETKTYNSLIHWLATDGQVDEAFAVLEEMETAGCRPDVVT 417

Query: 452 YSLL 455
           Y+ L
Sbjct: 418 YNRL 421



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 69/292 (23%), Positives = 126/292 (43%), Gaps = 9/292 (3%)

Query: 60  PKELDYSYLLEFTIKNHGISQGEKLFCCIPKD--YQNELLYNNLVIACLDKGVIKLSLEY 117
           P E  Y +L+    K   + +    F  + +     N   YN L+ A    G + ++L  
Sbjct: 133 PDEYTYGFLVNALGKAGRVQEARSFFDAMLERGLTPNIPTYNLLMDAFRKVGQLDMALGL 192

Query: 118 MKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEAN 177
             +M+  G   S + +N L+    S GR      +  +M  D  +P   T+  L+     
Sbjct: 193 FAEMKRRGFQPSVVTYNILLDALCSAGRVGAARKLFHKMTGDGCSPDSYTYSTLVNGLGK 252

Query: 178 DHNIEGLMKVYSDMKRSEVEPNEVSY-CILATAHAVARLYTVAETYVEALEKSMTGNNWS 236
              +E   KV+ +M    V  + V+Y  +LAT      +  V +   E   K    + +S
Sbjct: 253 SGRVEEAHKVFREMVDRGVAVDLVNYNSLLATLAKAGNMDRVWKLMKEMSRKGFHPDAFS 312

Query: 237 TLDVLIILYGYLAKGKDLERIWATVQEL---PNVRSKSYVLAIEAFGRIAQVSRAEELWL 293
             + ++   G   K      ++A + E    P++   SY + I+++ R    ++A ++  
Sbjct: 313 -FNTIMDALGKANKPDAAREVFARMVESGCKPDL--ISYNILIDSYARFGDAAQARQMLE 369

Query: 294 EMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHL 345
           EM     +  T+ YNS+I     +G +D+A  +L+EM   GC+P+ +TY  L
Sbjct: 370 EMVEAGFIPETKTYNSLIHWLATDGQVDEAFAVLEEMETAGCRPDVVTYNRL 421



 Score = 61.6 bits (148), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 64/309 (20%), Positives = 130/309 (42%), Gaps = 29/309 (9%)

Query: 53  IRERPYRPKELDYSYLLEFTIKNHGISQGEKLF------CCIPKDYQNELLYNNLVIACL 106
           ++ R ++P  + Y+ LL+       +    KLF       C P  Y     Y+ LV    
Sbjct: 196 MKRRGFQPSVVTYNILLDALCSAGRVGAARKLFHKMTGDGCSPDSYT----YSTLVNGLG 251

Query: 107 DKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVS 166
             G ++ + +  ++M   G ++  + +N L+   +  G    +  ++++M      P   
Sbjct: 252 KSGRVEEAHKVFREMVDRGVAVDLVNYNSLLATLAKAGNMDRVWKLMKEMSRKGFHPDAF 311

Query: 167 TFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHA----VARLYTVAETY 222
           +F+ +M      +  +   +V++ M  S  +P+ +SY IL  ++A     A+   + E  
Sbjct: 312 SFNTIMDALGKANKPDAAREVFARMVESGCKPDLISYNILIDSYARFGDAAQARQMLEEM 371

Query: 223 VEA--LEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSKSYVLA----I 276
           VEA  + ++ T N+         L  +LA    ++  +A ++E+     +  V+     +
Sbjct: 372 VEAGFIPETKTYNS---------LIHWLATDGQVDEAFAVLEEMETAGCRPDVVTYNRLM 422

Query: 277 EAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCK 336
           +  G+  +  RA  L+ +M+       T  Y   I     +  +D+A  L K+M   GC 
Sbjct: 423 DMLGKRGENQRAARLFQQMKDKGVEPDTLSYAVRIDGLAFDDRLDEALVLFKDMKAVGCP 482

Query: 337 PNAITYRHL 345
            +   YR L
Sbjct: 483 VDKAMYRIL 491


>gi|225457536|ref|XP_002272226.1| PREDICTED: pentatricopeptide repeat-containing protein At5g42310,
           mitochondrial [Vitis vinifera]
 gi|297745544|emb|CBI40709.3| unnamed protein product [Vitis vinifera]
          Length = 695

 Score = 84.0 bits (206), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 80/419 (19%), Positives = 178/419 (42%), Gaps = 51/419 (12%)

Query: 53  IRERPYRPKELDYSYLLEFTIKNHGISQGEKLFCCIPKD--YQNELLYNNLVIACLDKGV 110
           ++E    P+   Y+ LL+  +K   +   E +   + +     +E  Y+ L+ A  + G 
Sbjct: 317 LKEGGLMPRTRAYNALLKGYVKTGSLKDAESIVSEMERSGFSPDEHTYSLLIDAYANAGR 376

Query: 111 IKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHI 170
            + +   +K+M   G   +  VF+R++      G+ +    +LR+M+   V+P    +++
Sbjct: 377 WESARIVLKEMEASGVRPNSYVFSRILASYRDRGKWQKSFQVLREMRNSGVSPDRHFYNV 436

Query: 171 LMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSM 230
           ++      + ++  +  +  M+   V+P+ V++  L   H  +  +  AE   EA+++S 
Sbjct: 437 MIDTFGKCNCLDHALATFDRMRMEGVQPDAVTWNTLIDCHCKSGHHNKAEELFEAMQESG 496

Query: 231 TGNNWSTLDVLIILYGYLAKGKDLERIWATVQE---LPNVRSKSYVLAIEAFGRIAQVSR 287
                +T +++I  +G   + +D++ +   +Q    L NV   +Y   ++ +G+  +   
Sbjct: 497 CSPCTTTYNIMINSFGEQERWEDVKTLLGKMQSQGLLANV--VTYTTLVDIYGQSGRFKD 554

Query: 288 AEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLAL 347
           A E    M+SV    ++  YN++I+ Y + G  ++A    + M  +G KP+ +       
Sbjct: 555 AIECLEVMKSVGLKPSSTMYNALINAYAQRGLSEQAINAFRVMRADGLKPSVLVLN---- 610

Query: 348 GCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEEL 407
                                                 S+I  F E      A ++ + +
Sbjct: 611 --------------------------------------SLINAFGEDRRDAEAFSVLQYM 632

Query: 408 KKANYTKYTFVYNTLIKAYVKAKIND--PNLLRRMILGGARPDAETYSLLKLAEQFQKK 464
           K+ +       Y TL+KA ++ +  D  P +   M L G  PD +  ++L+ A ++ ++
Sbjct: 633 KENDLKPDVVTYTTLMKALIRVEKFDKVPAVYEEMTLSGCTPDRKARAMLRSALRYMER 691



 Score = 83.2 bits (204), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 108/487 (22%), Positives = 214/487 (43%), Gaps = 48/487 (9%)

Query: 1   IERLPRGEPVGSAFQSWMREGF-PVHRGEIFHSINRLRKLQLNKRALEVMEWVIRERPYR 59
           I  L R E +  AF    R+   P+    +  +  R   L+   +AL +M  + R+  + 
Sbjct: 161 IHALGRSEKLYEAFLLSQRQTLTPLTYNALIGACARNDDLE---KALNLMSRMRRDG-FP 216

Query: 60  PKELDYSYLLEFTIKNH--GISQGEKLFCCIPKDYQNEL---LYNNLVIACLDKGVIKLS 114
              ++YS++++   + +    S  +K++  I  D + EL   L N++++     G +  +
Sbjct: 217 SDFVNYSFIIQSLTRTNKSDSSMLQKIYAEIESD-KIELDGQLLNDIIVGFAKSGDVNRA 275

Query: 115 LEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKI 174
           + ++  ++  G S        +I    + GR +    I  ++K   + P    ++ L+K 
Sbjct: 276 MSFLAMVQGNGLSPKTATLVAVITALGNAGRTEEAEAIFEELKEGGLMPRTRAYNALLKG 335

Query: 175 EANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNN 234
                +++    + S+M+RS   P+E +Y +L  A+A A  +  A   ++ +E S    N
Sbjct: 336 YVKTGSLKDAESIVSEMERSGFSPDEHTYSLLIDAYANAGRWESARIVLKEMEASGVRPN 395

Query: 235 WSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSKS----YVLAIEAFGRIAQVSRAEE 290
                   IL  Y  +GK  ++ +  ++E+ N         Y + I+ FG+   +  A  
Sbjct: 396 SYVFSR--ILASYRDRGK-WQKSFQVLREMRNSGVSPDRHFYNVMIDTFGKCNCLDHALA 452

Query: 291 LW--LEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALG 348
            +  + M+ V+    T  +N++I  +CK+G  +KA  L + M  +GC P   TY ++ + 
Sbjct: 453 TFDRMRMEGVQPDAVT--WNTLIDCHCKSGHHNKAEELFEAMQESGCSPCTTTY-NIMIN 509

Query: 349 CFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELK 408
            F      E  K L LG K+ +   + +    + T  ++++I+ + G   +A    E +K
Sbjct: 510 SFGEQERWEDVKTL-LG-KMQSQGLLAN----VVTYTTLVDIYGQSGRFKDAIECLEVMK 563

Query: 409 KANYTKYTFVYNTLIKAYVKAKINDP--NLLRRMILGGARP-----------------DA 449
                  + +YN LI AY +  +++   N  R M   G +P                 DA
Sbjct: 564 SVGLKPSSTMYNALINAYAQRGLSEQAINAFRVMRADGLKPSVLVLNSLINAFGEDRRDA 623

Query: 450 ETYSLLK 456
           E +S+L+
Sbjct: 624 EAFSVLQ 630


>gi|242047600|ref|XP_002461546.1| hypothetical protein SORBIDRAFT_02g004520 [Sorghum bicolor]
 gi|241924923|gb|EER98067.1| hypothetical protein SORBIDRAFT_02g004520 [Sorghum bicolor]
          Length = 532

 Score = 84.0 bits (206), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 99/434 (22%), Positives = 186/434 (42%), Gaps = 25/434 (5%)

Query: 36  LRKLQLNKRALEVMEWVIRERP---YRPKELDYSYLLEFTIKNHGISQGEKLFCCIPKDY 92
           LR L   KR  + M  V+R  P     P    YS LL+         +  +L   + +D 
Sbjct: 55  LRTLCAKKRTSDAMNIVLRRMPELGCTPDVFSYSTLLKGLCAEKKCEEAAELIHMMAEDG 114

Query: 93  QN----ELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKT 148
            N     + Y+ ++     +G +  +     KM   G   + +  N +I           
Sbjct: 115 DNCPPDVVSYSTVIHGFFKEGDVGKAYTLFCKMLDHGIPPNVVTCNSVIDGLCKVQAMDK 174

Query: 149 IPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILAT 208
              +L+QM  + + P+ +T++ L+    +       +++  +M R    PN V+Y +L  
Sbjct: 175 AEAVLQQMIDEHIMPNCTTYNSLIHGYLSSGQWTEAVRILKEMSRDGQRPNVVTYNMLID 234

Query: 209 AHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQEL---P 265
               +  +  A     ++ +S    + +T   L  L+GY  +G  +E     V++L    
Sbjct: 235 CLCKSGFHAEAREIFNSMIQSGPKPDATTYGSL--LHGYATEGNLVE--MNNVKDLMVQN 290

Query: 266 NVRSKSYVLAIE--AFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKA 323
            +RS  +  +IE  A+ +  ++  A   +++MQ +  +     Y +VI   CK G +D A
Sbjct: 291 GMRSNHHTFSIEIYAYCKCGRLDEASLTFIKMQQLGFMPDIVTYTTVIDGLCKIGRLDDA 350

Query: 324 SGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLET 383
                +M  +G  PN IT+  L  G    ++  +  KA EL  +++     R   P +  
Sbjct: 351 MSRFCQMIDDGLSPNIITFTTLIHG---FSMYGKWEKAEELFYEMMD----RGIPPDVTI 403

Query: 384 TLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAY-VKAKINDP-NLLRRMI 441
             ++I+   ++G V  A+ LF+ + +A        YNT+I  Y +  ++ +   LL  M+
Sbjct: 404 FTAMIDRLFKEGKVTEAQKLFDLMPRAGAKPNVVSYNTMIHGYFIAGEVGEVMKLLDDML 463

Query: 442 LGGARPDAETYSLL 455
           L G +P A T++ L
Sbjct: 464 LIGLKPTAVTFNTL 477



 Score = 46.6 bits (109), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 85/421 (20%), Positives = 161/421 (38%), Gaps = 51/421 (12%)

Query: 10  VGSA---FQSWMREGFPVHRGEIFHSINRLRKLQLNKRALEVMEWVIRERPYRPKELDYS 66
           VG A   F   +  G P +       I+ L K+Q   +A  V++ +I E    P    Y+
Sbjct: 137 VGKAYTLFCKMLDHGIPPNVVTCNSVIDGLCKVQAMDKAEAVLQQMIDEH-IMPNCTTYN 195

Query: 67  YLLEFTIKNHGISQGEKLFCCIPKDYQ--NELLYNNLVIACLDKGVIKLSLEYMKKMRVL 124
            L+   + +   ++  ++   + +D Q  N + YN L+      G    + E    M   
Sbjct: 196 SLIHGYLSSGQWTEAVRILKEMSRDGQRPNVVTYNMLIDCLCKSGFHAEAREIFNSMIQS 255

Query: 125 GHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGL 184
           G       +  L+   ++ G    + N+   M  + +  +  TF I +        ++  
Sbjct: 256 GPKPDATTYGSLLHGYATEGNLVEMNNVKDLMVQNGMRSNHHTFSIEIYAYCKCGRLDEA 315

Query: 185 MKVYSDMKRSEVEPNEVSYC-ILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLII 243
              +  M++    P+ V+Y  ++     + RL      + + ++  ++ N        II
Sbjct: 316 SLTFIKMQQLGFMPDIVTYTTVIDGLCKIGRLDDAMSRFCQMIDDGLSPN--------II 367

Query: 244 LYGYLAKGKDLERIWATVQEL----------PNVRSKSYVLAIEAFGRIAQVSRAEELWL 293
            +  L  G  +   W   +EL          P+V    +   I+   +  +V+ A++L+ 
Sbjct: 368 TFTTLIHGFSMYGKWEKAEELFYEMMDRGIPPDV--TIFTAMIDRLFKEGKVTEAQKLFD 425

Query: 294 EMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSN 353
            M           YN++I  Y   G + +   LL +M + G KP A+T+  L  G     
Sbjct: 426 LMPRAGAKPNVVSYNTMIHGYFIAGEVGEVMKLLDDMLLIGLKPTAVTFNTLLDG----- 480

Query: 354 LVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEE-LKKANY 412
           +V  G K                  P ++T  ++I+   E G + +   LF E L KA+ 
Sbjct: 481 MVSMGLK------------------PDVDTCKTLIDSCCEDGRIEDILTLFREMLGKADK 522

Query: 413 T 413
           T
Sbjct: 523 T 523


>gi|115444491|ref|NP_001046025.1| Os02g0170000 [Oryza sativa Japonica Group]
 gi|49388067|dbj|BAD25179.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|113535556|dbj|BAF07939.1| Os02g0170000 [Oryza sativa Japonica Group]
          Length = 397

 Score = 84.0 bits (206), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 81/349 (23%), Positives = 148/349 (42%), Gaps = 12/349 (3%)

Query: 16  SWMRE-GFPVHRGEIFHSINRLRKLQLNKRALEVMEWVIRERPYRPKELDYSYLLEFTIK 74
           S MRE G P +       ++ L K +  ++A+EV + + RER  R     ++ ++    K
Sbjct: 36  SEMREHGIPPNATVYNAYLDGLLKARCTEKAVEVYQRMKRER-CRANTETFTLMINVYGK 94

Query: 75  NHGISQGEKLF------CCIPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSI 128
                   K+F       C P    N   Y  LV A   +G+ + + E  ++M+  GH  
Sbjct: 95  AKQPMSSMKVFNEMKSIGCKP----NICTYTALVNAFAREGLCEKAEEVFEEMQQAGHEP 150

Query: 129 SYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVY 188
               +N L+   S  G  +    I   M+     P  ++++IL+         E    V+
Sbjct: 151 DVYAYNALMEAYSRAGLPQGASEIFSLMQHMGCEPDRASYNILVDAYGRAGLHEDAEAVF 210

Query: 189 SDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYL 248
            ++K+  + P   S+ +L  AHA +   T  E  +  L KS    +   L+ ++  Y   
Sbjct: 211 EELKQRGMSPTMKSHMLLLAAHARSGNATRCEEVMAQLHKSGLTPDTFALNAMLNAYARA 270

Query: 249 AKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYN 308
            +  D+ER++A ++   +    +Y +A+ A+GR   V R E  +  + +         + 
Sbjct: 271 GRLDDMERLFAAMERRGDADVGTYNVAVNAYGRAGYVGRMEAAFAAVAARGLAADVVTWT 330

Query: 309 SVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEE 357
           + +  Y +     +  G+++EM   GC P+A T R L   C     VE+
Sbjct: 331 ARMGAYARRKEYGRCVGMVEEMVDAGCYPDAGTARVLLAACSDERQVEQ 379



 Score = 80.1 bits (196), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 61/278 (21%), Positives = 119/278 (42%), Gaps = 13/278 (4%)

Query: 160 KVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVA 219
           +  P   T+ +L++   N  ++     V S+M+   + PN   Y         AR    A
Sbjct: 7   QCVPTEDTYALLLRAYCNAGSLHRAEGVISEMREHGIPPNATVYNAYLDGLLKARCTEKA 66

Query: 220 ETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQEL---PNVRSKSYVLAI 276
               + +++     N  T  ++I +YG   +     +++  ++ +   PN+   +Y   +
Sbjct: 67  VEVYQRMKRERCRANTETFTLMINVYGKAKQPMSSMKVFNEMKSIGCKPNI--CTYTALV 124

Query: 277 EAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCK 336
            AF R     +AEE++ EMQ          YN+++  Y + G    AS +   M   GC+
Sbjct: 125 NAFAREGLCEKAEEVFEEMQQAGHEPDVYAYNALMEAYSRAGLPQGASEIFSLMQHMGCE 184

Query: 337 PNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGD 396
           P+  +Y  L     ++ L E+     E         K R  +P +++ + ++   A  G+
Sbjct: 185 PDRASYNILVDAYGRAGLHEDAEAVFE-------ELKQRGMSPTMKSHMLLLAAHARSGN 237

Query: 397 VGNAENLFEELKKANYTKYTFVYNTLIKAYVKA-KIND 433
               E +  +L K+  T  TF  N ++ AY +A +++D
Sbjct: 238 ATRCEEVMAQLHKSGLTPDTFALNAMLNAYARAGRLDD 275


>gi|357498921|ref|XP_003619749.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355494764|gb|AES75967.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 680

 Score = 84.0 bits (206), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 91/389 (23%), Positives = 153/389 (39%), Gaps = 46/389 (11%)

Query: 105 CLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPH 164
           CL KG I  +L +  K+  LG  +  + +  LI      G  +    +LR++    V   
Sbjct: 151 CL-KGQIHQALNFHDKLVALGFHLDQVSYGTLINGLCKVGETRAALELLRRVDGKLVQLD 209

Query: 165 VSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVE 224
           V  +  ++     D N+     +YS+M    +  N V+Y  L +   +      A     
Sbjct: 210 VVMYSTIIDSMCKDKNVNDAFDLYSEMVSRRISSNIVTYSALISGFCIVGKLKDAIGLFN 269

Query: 225 ALEKSMTGNNWSTLDVL----------------------------IILYGYLAKGKDLER 256
            +       +  T ++L                            I+ Y  L  G  L  
Sbjct: 270 KMTSENINPDVYTFNILVDAFCKEGRVKEAKNGLAMMMKQGIKPDIVTYNSLMDGYCLVN 329

Query: 257 IWATVQELPNVRS--------KSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYN 308
                + + N  S        +SY + I  F +I  V +A +L+ EM   +       YN
Sbjct: 330 EVNMAKSILNTMSHRGVTATVRSYNIVINGFCKIKMVDQAMKLFKEMHHKQIFPNVITYN 389

Query: 309 SVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKL 368
           S+I   CK+G I  A  L+  M   G +P+ ITY  +     K++LV+   KA+ L +KL
Sbjct: 390 SLIDGLCKSGRISYALELIDLMHDRGQQPDIITYSSILDALCKNHLVD---KAIALLIKL 446

Query: 369 ITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVK 428
               K +   P + T   +I+   + G + +A N+FE+L    Y      Y  +I+ +  
Sbjct: 447 ----KDQGIRPNMYTYTILIDGLCKGGRLEDARNIFEDLLVKGYNLTVNTYTVMIQGFCS 502

Query: 429 AKINDP--NLLRRMILGGARPDAETYSLL 455
             + D   +LL +M      PDA TY ++
Sbjct: 503 HGLFDEALSLLSKMKDNSCIPDAITYEII 531



 Score = 47.4 bits (111), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 47/226 (20%), Positives = 97/226 (42%), Gaps = 14/226 (6%)

Query: 151 NILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAH 210
           +IL  M    V   V +++I++        ++  MK++ +M   ++ PN ++Y  L    
Sbjct: 336 SILNTMSHRGVTATVRSYNIVINGFCKIKMVDQAMKLFKEMHHKQIFPNVITYNSLIDGL 395

Query: 211 AVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQEL------ 264
             +   + A   ++ +       +  T   ++     L K   +++  A + +L      
Sbjct: 396 CKSGRISYALELIDLMHDRGQQPDIITYSSIL---DALCKNHLVDKAIALLIKLKDQGIR 452

Query: 265 PNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKAS 324
           PN+ +  Y + I+   +  ++  A  ++ ++           Y  +I  +C +G  D+A 
Sbjct: 453 PNMYT--YTILIDGLCKGGRLEDARNIFEDLLVKGYNLTVNTYTVMIQGFCSHGLFDEAL 510

Query: 325 GLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLIT 370
            LL +M  N C P+AITY  +    F     +E  KA +L  ++IT
Sbjct: 511 SLLSKMKDNSCIPDAITYEIIICSLFDK---DENDKAEKLLREMIT 553



 Score = 43.5 bits (101), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 63/302 (20%), Positives = 126/302 (41%), Gaps = 31/302 (10%)

Query: 45  ALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQGEKLFCCIPKDY---QNELLYNNL 101
           ALE+++ ++ +R  +P  + YS +L+   KNH + +   L   + KD     N   Y  L
Sbjct: 404 ALELID-LMHDRGQQPDIITYSSILDALCKNHLVDKAIALLIKL-KDQGIRPNMYTYTIL 461

Query: 102 VIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKV 161
           +      G ++ +    + + V G++++   +  +I    S G      ++L +MK +  
Sbjct: 462 IDGLCKGGRLEDARNIFEDLLVKGYNLTVNTYTVMIQGFCSHGLFDEALSLLSKMKDNSC 521

Query: 162 APHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAET 221
            P   T+ I++    +    +   K+  +M    +  + + Y   + +   A  + +   
Sbjct: 522 IPDAITYEIIICSLFDKDENDKAEKLLREMITRGLLYSFLEYGSWSLSFMAAPAHFLNND 581

Query: 222 YVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWA-TVQELPNVRSKSYVLAIEAFG 280
            ++      +GN W+ L               LERI+   V    N+R K     +E   
Sbjct: 582 SLQCTSSQESGN-WAKLL--------------LERIYCDCVLTKSNMRDKD----VECPS 622

Query: 281 RIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAI 340
            I   +     W +   +  +     Y  +I  +C +G  D++  LL +M +NGC P+A+
Sbjct: 623 VIIYSTCD---WSKQGYILDVNT---YTVMIQGFCSHGLFDESLALLSKMEVNGCIPDAV 676

Query: 341 TY 342
           TY
Sbjct: 677 TY 678


>gi|449485308|ref|XP_004157129.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At4g31850, chloroplastic-like [Cucumis sativus]
          Length = 1113

 Score = 84.0 bits (206), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 85/374 (22%), Positives = 159/374 (42%), Gaps = 40/374 (10%)

Query: 98  YNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMK 157
           Y  L+ A  + G ++ + E   KM+  GH    +++  L+   +  G   T      QM+
Sbjct: 300 YTVLIDALCNAGQLENAKELFVKMKANGHKPDQVIYITLLDKFNDFGDLDTFKEFWSQME 359

Query: 158 ADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSY----CILATAHAVA 213
           AD   P V TF IL+ +     + +     +  M++  + PN  +Y    C L  A  + 
Sbjct: 360 ADGYMPDVVTFTILVDVLCKARDFDEAFATFDVMRKQGILPNLHTYNTLICGLLRAGRIE 419

Query: 214 RLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQEL------PN- 266
               + +T +E++    T   +      I    Y  K  +  +   T +++      PN 
Sbjct: 420 DALKLLDT-MESVGVQPTAYTY------ITFIDYFGKSGETGKAVETFEKMKAKGIVPNI 472

Query: 267 VRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGL 326
           V   + + ++   GR+ +   A+ ++  ++       +  YN ++  Y K G +D+A  L
Sbjct: 473 VACNASLYSLAEMGRLRE---AKTMFNGLRENGLAPDSVTYNMMMKCYSKVGQVDEAVNL 529

Query: 327 LKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALEL--GMKLITTKKVRSSTPWLETT 384
           L EM  NGC+P+ I    L    +K+  V+E ++  +    MKL         +P + T 
Sbjct: 530 LSEMIRNGCEPDVIVVNSLIDSLYKAGRVDEAWQMFDRMKDMKL---------SPTVVTY 580

Query: 385 LSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKINDP-----NLLRR 439
            +++    ++G V  A  LFE +     +  T  +NTL+  + K   ND       +  +
Sbjct: 581 NTLLSGLGKEGRVQKAIELFESMIXKKCSPNTISFNTLLDCFCK---NDEVELALKMFSK 637

Query: 440 MILGGARPDAETYS 453
           M +   +PD  TY+
Sbjct: 638 MTVMDCKPDVLTYN 651



 Score = 78.6 bits (192), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 75/313 (23%), Positives = 131/313 (41%), Gaps = 20/313 (6%)

Query: 151  NILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAH 210
            ++ + MK    AP   TF++L+ +      I  L ++Y +M     +P+ ++Y I+ ++ 
Sbjct: 809  DLFKDMKNVGCAPDAFTFNMLLAVHGKSGKITELFELYKEMISRRCKPDAITYNIVISSL 868

Query: 211  AVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSK 270
            A +     A  +   L  S       T   LI     LAK   LE      +E+ +   K
Sbjct: 869  AKSNNLDKALDFFYDLVSSDFRPTPRTYGPLI---DGLAKVGRLEEAMRLFEEMSDYGCK 925

Query: 271  S----YVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGL 326
                 + + I  +G+I     A +L+  M +       + Y  ++   C  G +D+A   
Sbjct: 926  PNCAIFNILINGYGKIGDTETACQLFKRMVNEGIRPDLKSYTILVDCLCLAGRVDEALYY 985

Query: 327  LKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLS 386
              E+   G  P+ I Y  +  G  KS  +EE        + L    + R   P L T  S
Sbjct: 986  FNELKSTGLDPDFIAYNRIINGLGKSQRMEEA-------LALYNEMRNRGIVPDLYTYNS 1038

Query: 387  IIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKINDP----NLLRRMIL 442
            ++      G V  A+ ++EEL+ A      F YN LI+ Y  ++  +P     + + M++
Sbjct: 1039 LMLNLGLAGMVEQAKRMYEELQLAGLEPDVFTYNALIRGYSLSE--NPEHAYTVYKNMMV 1096

Query: 443  GGARPDAETYSLL 455
             G  P+  TY+ L
Sbjct: 1097 DGCNPNIGTYAQL 1109



 Score = 75.1 bits (183), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 83/383 (21%), Positives = 143/383 (37%), Gaps = 53/383 (13%)

Query: 108 KGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVST 167
           +G ++     + KMR  G  ++   +N LI L    G       + R+M ++ + P + T
Sbjct: 170 RGGLRQMTTVLNKMRKAGFVLNAYSYNGLIHLLIQSGFCGEALEVYRRMVSEGLKPSLKT 229

Query: 168 FHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETY--VEA 225
           +  LM       + E +M +  +M+   + PN  ++ I      + R   + E Y     
Sbjct: 230 YSALMVALGKKRDSEMVMVLLKEMEDLGLRPNVYTFTI--CIRVLGRAGKIDEAYEIFRR 287

Query: 226 LEKSMTGNNWSTLDVLIILY---GYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRI 282
           ++    G +  T  VLI      G L   K+L          P+     Y+  ++ F   
Sbjct: 288 MDDEGCGPDLVTYTVLIDALCNAGQLENAKELFVKMKANGHKPD--QVIYITLLDKFNDF 345

Query: 283 AQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITY 342
             +   +E W +M++   +     +  ++ V CK    D+A      M   G  PN  TY
Sbjct: 346 GDLDTFKEFWSQMEADGYMPDVVTFTILVDVLCKARDFDEAFATFDVMRKQGILPNLHTY 405

Query: 343 RHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAEN 402
             L  G  ++  +E+        +KL+ T +     P   T ++ I+ F + G+ G A  
Sbjct: 406 NTLICGLLRAGRIED-------ALKLLDTMESVGVQPTAYTYITFIDYFGKSGETGKAVE 458

Query: 403 LFEELK---------KANYTKYTF--------------------------VYNTLIKAYV 427
            FE++K           N + Y+                            YN ++K Y 
Sbjct: 459 TFEKMKAKGIVPNIVACNASLYSLAEMGRLREAKTMFNGLRENGLAPDSVTYNMMMKCYS 518

Query: 428 KAKINDP--NLLRRMILGGARPD 448
           K    D   NLL  MI  G  PD
Sbjct: 519 KVGQVDEAVNLLSEMIRNGCEPD 541



 Score = 68.2 bits (165), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 56/189 (29%), Positives = 91/189 (48%), Gaps = 13/189 (6%)

Query: 271 SYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEM 330
           SY   I     +    +A +L+ +M++V        +N +++V+ K+G I +   L KEM
Sbjct: 790 SYNCLIGELLEVHYTEKAWDLFKDMKNVGCAPDAFTFNMLLAVHGKSGKITELFELYKEM 849

Query: 331 SMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEI 390
               CKP+AITY  +     KSN ++   KAL+    L+++       P   T   +I+ 
Sbjct: 850 ISRRCKPDAITYNIVISSLAKSNNLD---KALDFFYDLVSS----DFRPTPRTYGPLIDG 902

Query: 391 FAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKINDP----NLLRRMILGGAR 446
            A+ G +  A  LFEE+          ++N LI  Y   KI D      L +RM+  G R
Sbjct: 903 LAKVGRLEEAMRLFEEMSDYGCKPNCAIFNILINGY--GKIGDTETACQLFKRMVNEGIR 960

Query: 447 PDAETYSLL 455
           PD ++Y++L
Sbjct: 961 PDLKSYTIL 969



 Score = 66.2 bits (160), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 62/310 (20%), Positives = 130/310 (41%), Gaps = 13/310 (4%)

Query: 58  YRPKELDYSYLLEFTIKNHGISQGEKLFCCIPKD--YQNELLYNNLVIACLDKGVIKLSL 115
           Y P  + ++ L++   K     +    F  + K     N   YN L+   L  G I+ +L
Sbjct: 363 YMPDVVTFTILVDVLCKARDFDEAFATFDVMRKQGILPNLHTYNTLICGLLRAGRIEDAL 422

Query: 116 EYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIE 175
           + +  M  +G   +   +   I      G          +MKA  + P++   +  +   
Sbjct: 423 KLLDTMESVGVQPTAYTYITFIDYFGKSGETGKAVETFEKMKAKGIVPNIVACNASLYSL 482

Query: 176 ANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNW 235
           A    +     +++ ++ + + P+ V+Y ++   ++  ++  V E  V  L + +   N 
Sbjct: 483 AEMGRLREAKTMFNGLRENGLAPDSVTYNMMMKCYS--KVGQVDEA-VNLLSEMI--RNG 537

Query: 236 STLDVLII--LYGYLAKGKDLERIWATVQELPNVRSKSYVLA----IEAFGRIAQVSRAE 289
              DV+++  L   L K   ++  W     + +++    V+     +   G+  +V +A 
Sbjct: 538 CEPDVIVVNSLIDSLYKAGRVDEAWQMFDRMKDMKLSPTVVTYNTLLSGLGKEGRVQKAI 597

Query: 290 ELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGC 349
           EL+  M   K    T  +N+++  +CKN  ++ A  +  +M++  CKP+ +TY  +  G 
Sbjct: 598 ELFESMIXKKCSPNTISFNTLLDCFCKNDEVELALKMFSKMTVMDCKPDVLTYNTVIYGL 657

Query: 350 FKSNLVEEGF 359
            K N V   F
Sbjct: 658 IKENKVNHAF 667


>gi|115482066|ref|NP_001064626.1| Os10g0421800 [Oryza sativa Japonica Group]
 gi|113639235|dbj|BAF26540.1| Os10g0421800, partial [Oryza sativa Japonica Group]
          Length = 973

 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 87/361 (24%), Positives = 160/361 (44%), Gaps = 16/361 (4%)

Query: 94  NELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNIL 153
           N   YN LV   +  G  + +LE  + M V G   S   ++ L++   + G+R+ +  +L
Sbjct: 194 NAYTYNGLVYFLVKSGFDREALEVYRVMMVDGVVPSVRTYSVLMV---AFGKRRDVETVL 250

Query: 154 ---RQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAH 210
              R+M+A  V P+V ++ I +++       +   ++ + M+    +P+ +++ +L    
Sbjct: 251 WLLREMEAHGVKPNVYSYTICIRVLGQAKRFDEAYRILAKMENEGCKPDVITHTVLIQVL 310

Query: 211 AVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIW-ATVQELPNVRS 269
             A   + A+     ++KS    +  T   L+  +G     + +  IW A   +  N   
Sbjct: 311 CDAGRISDAKDVFWKMKKSDQKPDRVTYITLLDKFGDNGDSQSVMEIWNAMKADGYNDNV 370

Query: 270 KSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKE 329
            +Y   I+A  ++ +V  A E++ EM+    +     YNS+IS + K      A  L K 
Sbjct: 371 VAYTAVIDALCQVGRVFEALEMFDEMKQKGIVPEQYSYNSLISGFLKADRFGDALELFKH 430

Query: 330 MSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIE 389
           M ++G KPN  T+        KS    E  KA++   +L+ +K +    P +    +++ 
Sbjct: 431 MDIHGPKPNGYTHVLFINYYGKSG---ESIKAIQR-YELMKSKGI---VPDVVAGNAVLF 483

Query: 390 IFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKINDP--NLLRRMILGGARP 447
             A+ G +G A+ +F ELK    +  T  Y  +IK   KA   D    +   MI     P
Sbjct: 484 GLAKSGRLGMAKRVFHELKAMGVSPDTITYTMMIKCCSKASKFDEAVKIFYDMIENNCVP 543

Query: 448 D 448
           D
Sbjct: 544 D 544



 Score = 65.1 bits (157), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 81/370 (21%), Positives = 146/370 (39%), Gaps = 37/370 (10%)

Query: 118 MKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEAN 177
           + KM   G     +    LI +    GR     ++  +MK     P   T+  L+    +
Sbjct: 288 LAKMENEGCKPDVITHTVLIQVLCDAGRISDAKDVFWKMKKSDQKPDRVTYITLLDKFGD 347

Query: 178 DHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHA-VARLYTVAETYVEALEKSMTGNNWS 236
           + + + +M++++ MK      N V+Y  +  A   V R++   E + E  +K +    +S
Sbjct: 348 NGDSQSVMEIWNAMKADGYNDNVVAYTAVIDALCQVGRVFEALEMFDEMKQKGIVPEQYS 407

Query: 237 TLDVLIILYGYLAK---GKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWL 293
                 ++ G+L     G  LE         P     ++VL I  +G+  +  +A + + 
Sbjct: 408 YNS---LISGFLKADRFGDALELFKHMDIHGPKPNGYTHVLFINYYGKSGESIKAIQRYE 464

Query: 294 EMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSN 353
            M+S   +      N+V+    K+G +  A  +  E+   G  P+ ITY  +   C K++
Sbjct: 465 LMKSKGIVPDVVAGNAVLFGLAKSGRLGMAKRVFHELKAMGVSPDTITYTMMIKCCSKAS 524

Query: 354 LVEEGFKALELGMK------------LITT--KKVRSSTPW----------LETTL---- 385
             +E  K     ++            LI T  K  R    W          LE T     
Sbjct: 525 KFDEAVKIFYDMIENNCVPDVLAVNSLIDTLYKAGRGDEAWRIFYQLKEMNLEPTDGTYN 584

Query: 386 SIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVK-AKINDP-NLLRRMILG 443
           +++     +G V    +L EE+  +NY      YNT++    K   +ND  ++L  M   
Sbjct: 585 TLLAGLGREGKVKEVMHLLEEMYHSNYPPNLITYNTILDCLCKNGAVNDALDMLYSMTTK 644

Query: 444 GARPDAETYS 453
           G  PD  +Y+
Sbjct: 645 GCIPDLSSYN 654



 Score = 58.9 bits (141), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 58/276 (21%), Positives = 115/276 (41%), Gaps = 11/276 (3%)

Query: 88  IPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRK 147
           +P+ Y     YN+L+   L       +LE  K M +  H      +  ++ +N      +
Sbjct: 402 VPEQYS----YNSLISGFLKADRFGDALELFKHMDI--HGPKPNGYTHVLFINYYGKSGE 455

Query: 148 TIPNILRQ--MKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCI 205
           +I  I R   MK+  + P V   + ++   A    +    +V+ ++K   V P+ ++Y +
Sbjct: 456 SIKAIQRYELMKSKGIVPDVVAGNAVLFGLAKSGRLGMAKRVFHELKAMGVSPDTITYTM 515

Query: 206 LATAHAVARLYTVA-ETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQEL 264
           +    + A  +  A + + + +E +   +  +   ++  LY    +G +  RI+  ++E+
Sbjct: 516 MIKCCSKASKFDEAVKIFYDMIENNCVPDVLAVNSLIDTLY-KAGRGDEAWRIFYQLKEM 574

Query: 265 P-NVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKA 323
                  +Y   +   GR  +V     L  EM           YN+++   CKNG ++ A
Sbjct: 575 NLEPTDGTYNTLLAGLGREGKVKEVMHLLEEMYHSNYPPNLITYNTILDCLCKNGAVNDA 634

Query: 324 SGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGF 359
             +L  M+  GC P+  +Y  +  G  K     E F
Sbjct: 635 LDMLYSMTTKGCIPDLSSYNTVIYGLVKEERYNEAF 670



 Score = 52.4 bits (124), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 76/395 (19%), Positives = 158/395 (40%), Gaps = 43/395 (10%)

Query: 98  YNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMK 157
           YN L+     +G +K  +  +++M    +  + + +N ++      G      ++L  M 
Sbjct: 583 YNTLLAGLGREGKVKEVMHLLEEMYHSNYPPNLITYNTILDCLCKNGAVNDALDMLYSMT 642

Query: 158 ADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYC-ILATAHAVA--- 213
                P +S+++ ++     +        ++  MK+  + P+  + C IL +   +    
Sbjct: 643 TKGCIPDLSSYNTVIYGLVKEERYNEAFSIFCQMKKVLI-PDYATLCTILPSFVKIGLMK 701

Query: 214 -RLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSKSY 272
             L+ + + +++   K+   +  S ++ ++   G + K  +   I A+      +    +
Sbjct: 702 EALHIIKDYFLQPGSKTDRSSCHSLMEGILKKAG-IEKSIEFAEIIAS----SGITLDDF 756

Query: 273 VLA--IEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEM 330
            L   I+   +  +   A EL  + +S      T  YNS+I        ID A GL  EM
Sbjct: 757 FLCPLIKHLCKQKKALEAHELVKKFKSFGVSLKTGLYNSLICGLVDENLIDIAEGLFAEM 816

Query: 331 SMNGCKPNAITYRHLALGCFKSNLVEE-----------GFKALELGMKLITTKKVRSS-- 377
              GC P+  TY  L     KS  +EE           G+++  +    I +  V+S   
Sbjct: 817 KELGCGPDEFTYNLLLDAMGKSMRIEEMLKVQEEMHRKGYESTYVTYNTIISGLVKSRRL 876

Query: 378 ---------------TPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTL 422
                          +P   T   +++   + G + +AENLF E+ +        +YN L
Sbjct: 877 EQAIDLYYNLMSQGFSPTPCTYGPLLDGLLKAGRIEDAENLFNEMLEYGCKANCTIYNIL 936

Query: 423 IKAYVKAKINDP--NLLRRMILGGARPDAETYSLL 455
           +  +  A   +   +L + M+  G  PD ++Y+++
Sbjct: 937 LNGHRIAGNTEKVCHLFQDMVDQGINPDIKSYTII 971


>gi|380875521|gb|AFF27500.1| PPR domain-containing protein [Oryza sativa Indica Group]
          Length = 742

 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 75/309 (24%), Positives = 132/309 (42%), Gaps = 22/309 (7%)

Query: 123 VLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIE 182
           + G     +V+N L+ +     + K + ++  +M A  + P V TF+ LMK     H + 
Sbjct: 139 LFGIQADTVVYNHLLNVLVEGSKMKLLESVYSEMGARGIKPDVVTFNTLMKALCRAHQVR 198

Query: 183 GLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMT-----GNNWST 237
             + +  +M    V P+E ++  L           V E  +EA  +        G + + 
Sbjct: 199 TAVLMLEEMSSRGVAPDETTFTTLMQGF-------VEEGSIEAALRVKARMLEMGCSATK 251

Query: 238 LDVLIILYGYLAKGKDLERIWATVQELPN---VRSKSYVLAIEAFGRIAQVSRAEELWLE 294
           + V +++ GY   G+  + +    QE+ +       +Y   +    +   V  A ++   
Sbjct: 252 VTVNVLINGYCKLGRVEDALGYIQQEIADGFEPDQITYNTFVNGLCQNDHVGHALKVMDV 311

Query: 295 MQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNL 354
           M           YN V++  CKNG +++A G+L +M   GC P+  T+  L       N 
Sbjct: 312 MVQEGHDPDVFTYNIVVNCLCKNGQLEEAKGILNQMVDRGCLPDITTFNTLIAALCTGNR 371

Query: 355 VEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTK 414
           +EE   AL+L  ++     V+  +P + T   +I    + GD   A  LFEE+K +  T 
Sbjct: 372 LEE---ALDLARQV----TVKGVSPDVYTFNILINALCKVGDPHLALRLFEEMKNSGCTP 424

Query: 415 YTFVYNTLI 423
               YNTLI
Sbjct: 425 DEVTYNTLI 433



 Score = 75.1 bits (183), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 77/362 (21%), Positives = 139/362 (38%), Gaps = 43/362 (11%)

Query: 94  NELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNIL 153
           +++ YN  V        +  +L+ M  M   GH      +N ++      G+ +    IL
Sbjct: 285 DQITYNTFVNGLCQNDHVGHALKVMDVMVQEGHDPDVFTYNIVVNCLCKNGQLEEAKGIL 344

Query: 154 RQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVA 213
            QM      P ++TF+ L+      + +E  + +   +    V P+  ++ IL  A    
Sbjct: 345 NQMVDRGCLPDITTFNTLIAALCTGNRLEEALDLARQVTVKGVSPDVYTFNILINA---- 400

Query: 214 RLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSKSYV 273
            L  V + ++         N+  T D +                             +Y 
Sbjct: 401 -LCKVGDPHLALRLFEEMKNSGCTPDEV-----------------------------TYN 430

Query: 274 LAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMN 333
             I+    + ++ +A +L  +M+S    ++T  YN++I   CK   I++A  +  +M + 
Sbjct: 431 TLIDNLCSLGKLGKALDLLKDMESTGCPRSTITYNTIIDGLCKKMRIEEAEEVFDQMDLQ 490

Query: 334 GCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAE 393
           G   NAIT+  L  G  K   +++ F        LI         P   T  SI+  + +
Sbjct: 491 GISRNAITFNTLIDGLCKDKKIDDAF-------GLINQMISEGLQPNNITYNSILTHYCK 543

Query: 394 KGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKINDPNL--LRRMILGGARPDAET 451
           +GD+  A ++ E +    +      Y TLI    KA      L  LR M + G RP  + 
Sbjct: 544 QGDIKKAADILETMTANGFEVDVVTYGTLINGLCKAGRTQVALKVLRGMRIKGMRPTPKA 603

Query: 452 YS 453
           Y+
Sbjct: 604 YN 605



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 96/406 (23%), Positives = 168/406 (41%), Gaps = 61/406 (15%)

Query: 94  NELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNIL 153
           + ++YN+L+   ++   +KL      +M   G     + FN L+       + +T   +L
Sbjct: 145 DTVVYNHLLNVLVEGSKMKLLESVYSEMGARGIKPDVVTFNTLMKALCRAHQVRTAVLML 204

Query: 154 RQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVS-------YCIL 206
            +M +  VAP  +TF  LM+    + +IE  ++V + M        +V+       YC L
Sbjct: 205 EEMSSRGVAPDETTFTTLMQGFVEEGSIEAALRVKARMLEMGCSATKVTVNVLINGYCKL 264

Query: 207 A------------TAHAVARLYTVAETYVEAL-EKSMTGNNWSTLDVLI----------- 242
                         A           T+V  L +    G+    +DV++           
Sbjct: 265 GRVEDALGYIQQEIADGFEPDQITYNTFVNGLCQNDHVGHALKVMDVMVQEGHDPDVFTY 324

Query: 243 -ILYGYLAKGKDLERIWATVQE------LPNVRSKSYVLAIEAFGRIAQVSRAEELWLEM 295
            I+   L K   LE     + +      LP++ + + ++A    G     +R EE  L++
Sbjct: 325 NIVVNCLCKNGQLEEAKGILNQMVDRGCLPDITTFNTLIAALCTG-----NRLEE-ALDL 378

Query: 296 QSVKQLKATE----QYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFK 351
                +K        +N +I+  CK G    A  L +EM  +GC P+ +TY  L      
Sbjct: 379 ARQVTVKGVSPDVYTFNILINALCKVGDPHLALRLFEEMKNSGCTPDEVTYNTLI----- 433

Query: 352 SNLVEEG--FKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKK 409
            NL   G   KAL+L   + +T   RS+     T  +II+   +K  +  AE +F+++  
Sbjct: 434 DNLCSLGKLGKALDLLKDMESTGCPRSTI----TYNTIIDGLCKKMRIEEAEEVFDQMDL 489

Query: 410 ANYTKYTFVYNTLIKAYVK-AKINDP-NLLRRMILGGARPDAETYS 453
              ++    +NTLI    K  KI+D   L+ +MI  G +P+  TY+
Sbjct: 490 QGISRNAITFNTLIDGLCKDKKIDDAFGLINQMISEGLQPNNITYN 535



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 65/296 (21%), Positives = 121/296 (40%), Gaps = 20/296 (6%)

Query: 87  CIPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRR 146
           C P    +E+ YN L+      G +  +L+ +K M   G   S + +N +I       R 
Sbjct: 422 CTP----DEVTYNTLIDNLCSLGKLGKALDLLKDMESTGCPRSTITYNTIIDGLCKKMRI 477

Query: 147 KTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCIL 206
           +    +  QM    ++ +  TF+ L+     D  I+    + + M    ++PN ++Y  +
Sbjct: 478 EEAEEVFDQMDLQGISRNAITFNTLIDGLCKDKKIDDAFGLINQMISEGLQPNNITYNSI 537

Query: 207 ATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKG-KDLERIWATVQELP 265
            T +        A   +E    +MT N +   +V ++ YG L  G     R    ++ L 
Sbjct: 538 LTHYCKQGDIKKAADILE----TMTANGF---EVDVVTYGTLINGLCKAGRTQVALKVLR 590

Query: 266 NVR-------SKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNG 318
            +R        K+Y   +++  R   +  A  L+ EM  V +      Y  V    C+ G
Sbjct: 591 GMRIKGMRPTPKAYNPVLQSLFRRNNIRDALSLFREMAEVGEPPDALTYKIVFRGLCRGG 650

Query: 319 F-IDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKK 373
             I +A   + EM   G  P   ++R LA G     + +   +A+E+ M+ +  ++
Sbjct: 651 GPIKEAFDFMLEMVDKGFIPEFSSFRMLAEGLLNLGMDDYFIRAIEIIMEKVDLRE 706


>gi|224130790|ref|XP_002328377.1| predicted protein [Populus trichocarpa]
 gi|222838092|gb|EEE76457.1| predicted protein [Populus trichocarpa]
          Length = 688

 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 78/375 (20%), Positives = 165/375 (44%), Gaps = 34/375 (9%)

Query: 96  LLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQ 155
           + +  L+    ++G IK+++E   +M   GH    + +N LI    + G      ++ ++
Sbjct: 164 ITFTTLINGVCNEGKIKVAVELYNEMVRSGHEPDVISYNTLINGLCNSGNTNMAVHVFKK 223

Query: 156 MKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSY-------CILAT 208
           M+ +   P+V T++ ++     D  +   M   S+M    + P+ ++Y       C L  
Sbjct: 224 MEQNGCKPNVVTYNTIIDSLCKDRLVNDAMDFLSEMVGRGIPPDAITYNSIVHGLCCLGQ 283

Query: 209 AHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQEL---- 264
            +   RL+       + +E++    +  T +++I     L K + +      + E+    
Sbjct: 284 LNEATRLF-------KRMEQNGCKPDVVTYNIII---DSLYKDRLVNDAADFLSEMVDQG 333

Query: 265 --PNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDK 322
             P+V   +Y   +     + Q++ A  L+ +M+          YN++I   CK+  ++ 
Sbjct: 334 IPPDVV--TYTTILHGLCYLGQLNEAIRLFKKMEQKGCKPDVVAYNTIIDSLCKDRLVND 391

Query: 323 ASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLE 382
           A   L EM   G  PNA+TY  +  G      ++E   A +L  +++     R+  P   
Sbjct: 392 AMEFLSEMVDRGIPPNAVTYSTILHGFCNLGQLDE---ATQLFKEMVG----RNVMPNTL 444

Query: 383 TTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAY-VKAKINDPNLLRRMI 441
           T   +++   ++G V  A  +FE + +       + YN L+  Y ++ K+N+   +  ++
Sbjct: 445 TFSILVDGLCQEGMVSEARWVFETMTEKGVEPNIYTYNALMNGYCLRCKMNEARKVFEIM 504

Query: 442 LG-GARPDAETYSLL 455
           +G G  PD  +Y++L
Sbjct: 505 VGKGCAPDLHSYNIL 519



 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 73/297 (24%), Positives = 124/297 (41%), Gaps = 43/297 (14%)

Query: 161 VAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAE 220
           + P V TF  L+    N+  I+  +++Y++M RS  EP+ +SY                 
Sbjct: 159 IQPDVITFTTLINGVCNEGKIKVAVELYNEMVRSGHEPDVISY----------------N 202

Query: 221 TYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFG 280
           T +  L  S  GN    + V           K +E+        PNV +  Y   I++  
Sbjct: 203 TLINGLCNS--GNTNMAVHVF----------KKMEQNGCK----PNVVT--YNTIIDSLC 244

Query: 281 RIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAI 340
           +   V+ A +   EM           YNS++   C  G +++A+ L K M  NGCKP+ +
Sbjct: 245 KDRLVNDAMDFLSEMVGRGIPPDAITYNSIVHGLCCLGQLNEATRLFKRMEQNGCKPDVV 304

Query: 341 TYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNA 400
           TY  +    +K  LV +           ++    +   P + T  +I+      G +  A
Sbjct: 305 TYNIIIDSLYKDRLVND-------AADFLSEMVDQGIPPDVVTYTTILHGLCYLGQLNEA 357

Query: 401 ENLFEELKKANYTKYTFVYNTLIKAYVKAK-INDP-NLLRRMILGGARPDAETYSLL 455
             LF+++++         YNT+I +  K + +ND    L  M+  G  P+A TYS +
Sbjct: 358 IRLFKKMEQKGCKPDVVAYNTIIDSLCKDRLVNDAMEFLSEMVDRGIPPNAVTYSTI 414



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 82/417 (19%), Positives = 164/417 (39%), Gaps = 30/417 (7%)

Query: 28  EIFHSINRLRKLQLNKRALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQGEKLFC- 86
            I H +  L +L    R  + ME    +   +P  + Y+ +++   K+  ++        
Sbjct: 273 SIVHGLCCLGQLNEATRLFKRME----QNGCKPDVVTYNIIIDSLYKDRLVNDAADFLSE 328

Query: 87  ----CIPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSS 142
                IP D    + Y  ++      G +  ++   KKM   G     + +N +I    S
Sbjct: 329 MVDQGIPPDV---VTYTTILHGLCYLGQLNEAIRLFKKMEQKGCKPDVVAYNTII---DS 382

Query: 143 PGRRKTIPN---ILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPN 199
             + + + +    L +M    + P+  T+  ++    N   ++   +++ +M    V PN
Sbjct: 383 LCKDRLVNDAMEFLSEMVDRGIPPNAVTYSTILHGFCNLGQLDEATQLFKEMVGRNVMPN 442

Query: 200 EVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWA 259
            +++ IL        + + A    E + +     N  T + L+  Y    K  +  +++ 
Sbjct: 443 TLTFSILVDGLCQEGMVSEARWVFETMTEKGVEPNIYTYNALMNGYCLRCKMNEARKVFE 502

Query: 260 TVQE---LPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCK 316
            +      P++ S  Y + I  +    ++ +A+ L  +M   K    T  YN+++   C 
Sbjct: 503 IMVGKGCAPDLHS--YNILINGYCNSRRMDKAKALLTQMSVKKLTPNTVTYNTIMKGLCY 560

Query: 317 NGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRS 376
            G +  A  L K+M  +G  P  +TY  L  G  K   ++E        +KL  + K + 
Sbjct: 561 VGRLLDAQELFKKMCSSGMLPTLMTYSILLNGLCKHGHLDE-------ALKLFKSMKEKK 613

Query: 377 STPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKIND 433
             P +     +IE     G +  A+ LF +L           YN +IK  +K  ++D
Sbjct: 614 LEPDIILYTILIEGMFIGGKLEVAKGLFSKLSADGIQPPGRTYNVMIKGLLKEGLSD 670


>gi|356503775|ref|XP_003520679.1| PREDICTED: pentatricopeptide repeat-containing protein At5g12100,
           mitochondrial-like [Glycine max]
          Length = 777

 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 91/363 (25%), Positives = 160/363 (44%), Gaps = 15/363 (4%)

Query: 98  YNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMK 157
           YN LV A   +G +K ++   ++M   G   + + FN +I      G        +R+M 
Sbjct: 363 YNILVNAYCQEGDVKKAILTTEQMEERGLEPNRITFNTVISKFCETGEVDHAETWVRRMV 422

Query: 158 ADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYT 217
              V+P V T++ L+       +     +   +M ++ ++PN +SY  L       R   
Sbjct: 423 EKGVSPTVETYNSLINGYGQKGHFVRCFEFLDEMDKAGIKPNVISYGSLINCLCKDRKLI 482

Query: 218 VAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIW-ATVQELPNVRSKSYVLAI 276
            AE  +  +       N    ++LI     L+K KD  R +   +Q   +    +Y   I
Sbjct: 483 DAEIVLADMIGRGVSPNAEIYNMLIEASCSLSKLKDAFRFFDEMIQSGIDATLVTYNTLI 542

Query: 277 EAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCK 336
              GR  +V +AE+L+L+M           YNS+IS Y K+    K   L  +M + G K
Sbjct: 543 NGLGRNGRVKKAEDLFLQMAGKGCNPDVITYNSLISGYAKSVNTQKCLELYDKMKILGIK 602

Query: 337 PNAITYRHLALGCFKSNLV--EEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEK 394
           P   T+  L   C K  +V  ++ F+ + L M L+  + V +          +I  +AE 
Sbjct: 603 PTVGTFHPLIYACRKEGVVTMDKMFQEM-LQMDLVPDQFVYN---------EMIYSYAED 652

Query: 395 GDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKA-KIND-PNLLRRMILGGARPDAETY 452
           G+V  A +L +++           YN+LI AY++  ++++  +L+  M   G  P  +TY
Sbjct: 653 GNVMKAMSLHQQMVDQGVDCDKVTYNSLILAYLRDRRVSEIKHLVDDMKAKGLVPKVDTY 712

Query: 453 SLL 455
           ++L
Sbjct: 713 NIL 715



 Score = 75.1 bits (183), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 83/354 (23%), Positives = 148/354 (41%), Gaps = 24/354 (6%)

Query: 106 LDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHV 165
           LDKG      E MK M   G   S   +N ++       R K    +  +M    + P+ 
Sbjct: 173 LDKG-----FELMKSMVKDGMGPSVFAYNLVLGGLCKVRRIKDARKLFDEMIQRNMVPNT 227

Query: 166 STFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSY-CILATAHAVARLYTVAETYVE 224
            T++ L+        IE  +     MK   VE N V+Y  +L       R+    E  +E
Sbjct: 228 VTYNTLIDGYCKVGGIEEALGFKERMKEQNVECNLVTYNSLLNGLCGSGRVDDAREVLLE 287

Query: 225 ALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQ 284
                M G+ +     L  ++   + G   + ++   +E+  +  ++Y + +    R+ +
Sbjct: 288 -----MEGSGFLPGGFLSFVFDDHSNGAGDDGLFDG-KEI-RIDERTYCILLNGLCRVGR 340

Query: 285 VSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRH 344
           + +AEE+  ++       +   YN +++ YC+ G + KA    ++M   G +PN IT+  
Sbjct: 341 IEKAEEVLAKLVENGVTPSKISYNILVNAYCQEGDVKKAILTTEQMEERGLEPNRITFNT 400

Query: 345 LALGCFKSNLVEEG-FKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENL 403
           +      S   E G     E  ++ +  K V   +P +ET  S+I  + +KG        
Sbjct: 401 VI-----SKFCETGEVDHAETWVRRMVEKGV---SPTVETYNSLINGYGQKGHFVRCFEF 452

Query: 404 FEELKKANYTKYTFVYNTLIKAYVKAK--INDPNLLRRMILGGARPDAETYSLL 455
            +E+ KA        Y +LI    K +  I+   +L  MI  G  P+AE Y++L
Sbjct: 453 LDEMDKAGIKPNVISYGSLINCLCKDRKLIDAEIVLADMIGRGVSPNAEIYNML 506



 Score = 43.9 bits (102), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 48/225 (21%), Positives = 94/225 (41%), Gaps = 6/225 (2%)

Query: 94  NELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNIL 153
           N  +YN L+ A      +K +  +  +M   G   + + +N LI      GR K   ++ 
Sbjct: 499 NAEIYNMLIEASCSLSKLKDAFRFFDEMIQSGIDATLVTYNTLINGLGRNGRVKKAEDLF 558

Query: 154 RQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVA 213
            QM      P V T++ L+   A   N +  +++Y  MK   ++P   ++  L  A    
Sbjct: 559 LQMAGKGCNPDVITYNSLISGYAKSVNTQKCLELYDKMKILGIKPTVGTFHPLIYACRKE 618

Query: 214 RLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKG---KDLERIWATVQELPNVRSK 270
            + T+ + + E L+  +  + +   +   ++Y Y   G   K +      V +  +    
Sbjct: 619 GVVTMDKMFQEMLQMDLVPDQFVYNE---MIYSYAEDGNVMKAMSLHQQMVDQGVDCDKV 675

Query: 271 SYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYC 315
           +Y   I A+ R  +VS  + L  +M++   +   + YN +I   C
Sbjct: 676 TYNSLILAYLRDRRVSEIKHLVDDMKAKGLVPKVDTYNILIKGLC 720


>gi|356577604|ref|XP_003556914.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At2g32630-like [Glycine max]
          Length = 619

 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 83/321 (25%), Positives = 143/321 (44%), Gaps = 25/321 (7%)

Query: 144 GRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSY 203
           GR K + N   +M A  V P V T++ L+       + EG+ ++   M+R  V  + V+Y
Sbjct: 199 GRAKELMN---EMAARGVVPTVFTYNTLLNACVVRKDREGVDEILGLMEREGVVASLVTY 255

Query: 204 CILATAHAVA-RLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQ 262
            IL   +A + R+    + Y E  E+++  + +    V   +  +  +  ++ R  A   
Sbjct: 256 TILIEWYASSERIGEAEKVYEEMCERNVEMDVY----VYTSMISWNCRAGNVRRASALFD 311

Query: 263 EL------PNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCK 316
           E+      PN  + ++   I    +  Q+  AE L  EMQ          +N+++  YCK
Sbjct: 312 EMICRGIVPN--TXTFGALISGVCKAGQMEAAEILLEEMQCKGVDLNVVIFNTMMDGYCK 369

Query: 317 NGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRS 376
            G +D+A  L   M   G + +  TY  LA G  K +  EE  + L + ++       + 
Sbjct: 370 RGMMDEAFRLQDIMERKGFEADVFTYNILASGLCKLHRYEEAKRVLNVMVE-------KG 422

Query: 377 STPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVK-AKINDPN 435
             P + T  + IEI+ ++G++   E     ++K         YNTLI AY K  K+   +
Sbjct: 423 VAPNVVTCATFIEIYCQEGNLAEPERFLRNIEKRGVVPNIVTYNTLIDAYSKNEKVKQAH 482

Query: 436 LLR-RMILGGARPDAETYSLL 455
            L+  M+  G  PD  TY+ L
Sbjct: 483 XLKAEMVEKGLLPDVFTYTSL 503



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 65/309 (21%), Positives = 125/309 (40%), Gaps = 7/309 (2%)

Query: 65  YSYLLEFTIKNHGISQGEKLF--CCIPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMR 122
           Y+ L+E+   +  I + EK++   C      +  +Y +++      G ++ +     +M 
Sbjct: 255 YTILIEWYASSERIGEAEKVYEEMCERNVEMDVYVYTSMISWNCRAGNVRRASALFDEMI 314

Query: 123 VLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIE 182
             G   +   F  LI      G+ +    +L +M+   V  +V  F+ +M        ++
Sbjct: 315 CRGIVPNTXTFGALISGVCKAGQMEAAEILLEEMQCKGVDLNVVIFNTMMDGYCKRGMMD 374

Query: 183 GLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLI 242
              ++   M+R   E +  +Y ILA+       Y  A+  +  + +     N  T    I
Sbjct: 375 EAFRLQDIMERKGFEADVFTYNILASGLCKLHRYEEAKRVLNVMVEKGVAPNVVTCATFI 434

Query: 243 ILYGYLAKGKDLERIWATVQE---LPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVK 299
            +Y       + ER    +++   +PN+   +Y   I+A+ +  +V +A  L  EM    
Sbjct: 435 EIYCQEGNLAEPERFLRNIEKRGVVPNI--VTYNTLIDAYSKNEKVKQAHXLKAEMVEKG 492

Query: 300 QLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGF 359
            L     Y S+I   C    +D+A  L  EM + G + N  TY  +  G  K    +E  
Sbjct: 493 LLPDVFTYTSLIHGECIVDKVDEALKLFNEMLVKGIRGNVKTYTAIISGLSKEGRADEAL 552

Query: 360 KALELGMKL 368
           K  +  M++
Sbjct: 553 KLYDEMMRM 561



 Score = 38.9 bits (89), Expect = 6.0,   Method: Compositional matrix adjust.
 Identities = 68/309 (22%), Positives = 123/309 (39%), Gaps = 20/309 (6%)

Query: 50  EWVIRERPYRPKELD---YSYLLEFTIKNHGISQGEKLF----C--CIPKDYQNELLYNN 100
           E V  E   R  E+D   Y+ ++ +  +   + +   LF    C   +P    N   +  
Sbjct: 272 EKVYEEMCERNVEMDVYVYTSMISWNCRAGNVRRASALFDEMICRGIVP----NTXTFGA 327

Query: 101 LVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADK 160
           L+      G ++ +   +++M+  G  ++ ++FN ++      G       +   M+   
Sbjct: 328 LISGVCKAGQMEAAEILLEEMQCKGVDLNVVIFNTMMDGYCKRGMMDEAFRLQDIMERKG 387

Query: 161 VAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAE 220
               V T++IL       H  E   +V + M    V PN V+       +         E
Sbjct: 388 FEADVFTYNILASGLCKLHRYEEAKRVLNVMVEKGVAPNVVTCATFIEIYCQEGNLAEPE 447

Query: 221 TYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQE---LPNVRSKSYVLAIE 277
            ++  +EK     N  T + LI  Y    K K    + A + E   LP+V + + ++  E
Sbjct: 448 RFLRNIEKRGVVPNIVTYNTLIDAYSKNEKVKQAHXLKAEMVEKGLLPDVFTYTSLIHGE 507

Query: 278 AFGRIAQVSRAEELWLEMQSVKQLKA-TEQYNSVISVYCKNGFIDKASGLLKEMSMNGCK 336
               + +V  A +L+ EM  VK ++   + Y ++IS   K G  D+A  L  EM   G  
Sbjct: 508 CI--VDKVDEALKLFNEML-VKGIRGNVKTYTAIISGLSKEGRADEALKLYDEMMRMGLI 564

Query: 337 PNAITYRHL 345
           P+   +  L
Sbjct: 565 PDDRVFEAL 573


>gi|449451896|ref|XP_004143696.1| PREDICTED: pentatricopeptide repeat-containing protein At5g61990,
           mitochondrial-like [Cucumis sativus]
          Length = 1032

 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 103/448 (22%), Positives = 175/448 (39%), Gaps = 52/448 (11%)

Query: 53  IRERPYRPKELDYSYLLEFTIKNHGISQGEKLFCCIPKD--YQNELLYNNLVIACLDKGV 110
           ++ R   P    YS L+     +  + +  ++   + ++    N  +Y  L+ A + +  
Sbjct: 442 MKARKLTPSPFTYSVLISGLCHSSDLQKANEVLDQMIRNGVKPNVFMYGTLIKAYVQESR 501

Query: 111 IKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHI 170
            ++++E +K M   G       +N LII      + +    +L  M    + P+  T+  
Sbjct: 502 YEMAIELLKIMIANGVLPDLFCYNCLIIGLCRAKKVEEAKMLLVDMGEKGIKPNAHTYGA 561

Query: 171 LMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHA-VARLYTVAETYVEALEK- 228
            + + +    I+   + + DM  S + PN V Y IL   H  V        T+   LEK 
Sbjct: 562 FINLYSKSGEIQVAERYFKDMLSSGIVPNNVIYTILIKGHCDVGNTVEALSTFKCMLEKG 621

Query: 229 ---------------SMTGNNWSTLDVL-----------IILYGYLAKG----KDLERIW 258
                          S  G     + V            + LY  L  G     D+E+  
Sbjct: 622 LIPDIRAYSAIIHSLSKNGKTKEAMGVFLKFLKTGVVPDVFLYNSLISGFCKEGDIEKAS 681

Query: 259 ATVQEL------PNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVIS 312
               E+      PN+    Y   I    ++ +V++A EL+ E++    +     Y+++I 
Sbjct: 682 QLYDEMLHNGINPNIVV--YNTLINGLCKLGEVTKARELFDEIEEKDLVPDVVTYSTIID 739

Query: 313 VYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTK 372
            YCK+G + +A  L  EM   G  P+   Y  L  GC K   +E   KAL L       +
Sbjct: 740 GYCKSGNLTEAFKLFDEMISKGISPDGYIYCILIDGCGKEGNLE---KALSL-----FHE 791

Query: 373 KVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKIN 432
             + S   L    S+I+ F + G V  A  LF+++     T     Y  LI AY KA++ 
Sbjct: 792 AQQKSVGSLSAFNSLIDSFCKHGKVIEARELFDDMVDKKLTPNIVTYTILIDAYGKAEMM 851

Query: 433 D--PNLLRRMILGGARPDAETYSLLKLA 458
           +    L   M      P+  TY+ L L+
Sbjct: 852 EEAEQLFLDMETRNIIPNTLTYTSLLLS 879



 Score = 65.9 bits (159), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 77/342 (22%), Positives = 147/342 (42%), Gaps = 15/342 (4%)

Query: 96  LLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQ 155
            LYN+L+     +G I+ + +   +M   G + + +V+N LI      G       +  +
Sbjct: 662 FLYNSLISGFCKEGDIEKASQLYDEMLHNGINPNIVVYNTLINGLCKLGEVTKARELFDE 721

Query: 156 MKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAV-AR 214
           ++   + P V T+  ++       N+    K++ +M    + P+   YCIL         
Sbjct: 722 IEEKDLVPDVVTYSTIIDGYCKSGNLTEAFKLFDEMISKGISPDGYIYCILIDGCGKEGN 781

Query: 215 LYTVAETYVEALEKSMTGNNWSTLDVLI---ILYGYLAKGKDLERIWATVQELPNVRSKS 271
           L      + EA +KS+   + S  + LI     +G + + ++L       +  PN+ +  
Sbjct: 782 LEKALSLFHEAQQKSV--GSLSAFNSLIDSFCKHGKVIEARELFDDMVDKKLTPNIVT-- 837

Query: 272 YVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMS 331
           Y + I+A+G+   +  AE+L+L+M++   +  T  Y S++  Y + G   K   L K+M 
Sbjct: 838 YTILIDAYGKAEMMEEAEQLFLDMETRNIIPNTLTYTSLLLSYNQIGNRFKMISLFKDME 897

Query: 332 MNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIF 391
             G   +AI Y     G   S   +EG K+LE  +KL+    V       +   ++I   
Sbjct: 898 ARGIACDAIAY-----GVMASAYCKEG-KSLE-ALKLLNKSLVEGIKLEDDVFDALIFHL 950

Query: 392 AEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKIND 433
            ++  +     L  E+ K   +  +   NTL+  + K+   D
Sbjct: 951 CKEKQISTVLELLSEMGKEELSLSSKTCNTLLLGFYKSGNED 992



 Score = 60.1 bits (144), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 80/368 (21%), Positives = 145/368 (39%), Gaps = 20/368 (5%)

Query: 94  NELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNIL 153
           N   YN  +      G +  +LE  K M   G       +  L+       R K    I 
Sbjct: 275 NLFTYNAFIGGLCQTGAVDEALEVKKLMMEKGLGPDGHTYTLLVDGFCKQKRSKEAKLIF 334

Query: 154 RQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSY-CILATAHAV 212
             M +  + P+  T+  L+     + NIE  +++  +M    ++ N V+Y  ++      
Sbjct: 335 ESMPSSGLNPNRFTYTALIDGFIKEGNIEEALRIKDEMITRGLKLNVVTYNAMIGGIAKA 394

Query: 213 ARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSK-- 270
             +      + E L   +  + W T ++LI   GYL K  D+ +    + E+   +    
Sbjct: 395 GEMAKAMSLFNEMLMAGLEPDTW-TYNLLI--DGYL-KSHDMAKACELLAEMKARKLTPS 450

Query: 271 --SYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLK 328
             +Y + I      + + +A E+  +M           Y ++I  Y +    + A  LLK
Sbjct: 451 PFTYSVLISGLCHSSDLQKANEVLDQMIRNGVKPNVFMYGTLIKAYVQESRYEMAIELLK 510

Query: 329 EMSMNGCKPNAITYRHLALGCFKSNLVEEGFKAL-ELGMKLITTKKVRSSTPWLETTLSI 387
            M  NG  P+   Y  L +G  ++  VEE    L ++G K I         P   T  + 
Sbjct: 511 IMIANGVLPDLFCYNCLIIGLCRAKKVEEAKMLLVDMGEKGI--------KPNAHTYGAF 562

Query: 388 IEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAY--VKAKINDPNLLRRMILGGA 445
           I ++++ G++  AE  F+++  +       +Y  LIK +  V   +   +  + M+  G 
Sbjct: 563 INLYSKSGEIQVAERYFKDMLSSGIVPNNVIYTILIKGHCDVGNTVEALSTFKCMLEKGL 622

Query: 446 RPDAETYS 453
            PD   YS
Sbjct: 623 IPDIRAYS 630



 Score = 55.5 bits (132), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 79/314 (25%), Positives = 126/314 (40%), Gaps = 45/314 (14%)

Query: 180 NIEGLM-KVYSDMKRSEVEPNEVSYCILATAHAVA-------------------RLYT-- 217
           N+ GL  KVY  M  +++ P+  +Y  +  AH                       L+T  
Sbjct: 221 NMMGLFWKVYGSMVEAKIVPDVYTYTNVIKAHCKVGDVIKGKMVLSEMEKECKPNLFTYN 280

Query: 218 -----VAETYV--EALE------KSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQEL 264
                + +T    EALE      +   G +  T  +L+  +    + K+ + I+ ++   
Sbjct: 281 AFIGGLCQTGAVDEALEVKKLMMEKGLGPDGHTYTLLVDGFCKQKRSKEAKLIFESMPSS 340

Query: 265 P-NVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKA 323
             N    +Y   I+ F +   +  A  +  EM +         YN++I    K G + KA
Sbjct: 341 GLNPNRFTYTALIDGFIKEGNIEEALRIKDEMITRGLKLNVVTYNAMIGGIAKAGEMAKA 400

Query: 324 SGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLET 383
             L  EM M G +P+  TY  L  G  KS+   +  KA E    L+   K R  TP   T
Sbjct: 401 MSLFNEMLMAGLEPDTWTYNLLIDGYLKSH---DMAKACE----LLAEMKARKLTPSPFT 453

Query: 384 TLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKINDP--NLLRRMI 441
              +I       D+  A  + +++ +       F+Y TLIKAYV+    +    LL+ MI
Sbjct: 454 YSVLISGLCHSSDLQKANEVLDQMIRNGVKPNVFMYGTLIKAYVQESRYEMAIELLKIMI 513

Query: 442 LGGARPDAETYSLL 455
             G  PD   Y+ L
Sbjct: 514 ANGVLPDLFCYNCL 527



 Score = 42.0 bits (97), Expect = 0.64,   Method: Compositional matrix adjust.
 Identities = 76/366 (20%), Positives = 146/366 (39%), Gaps = 62/366 (16%)

Query: 33   INRLRKLQLNKRALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQGEKLF------C 86
            IN L KL    +A E+ +  I E+   P  + YS +++   K+  +++  KLF       
Sbjct: 703  INGLCKLGEVTKARELFDE-IEEKDLVPDVVTYSTIIDGYCKSGNLTEAFKLFDEMISKG 761

Query: 87   CIPKDYQNELLYNNLVIACLDKGVIK--LSLEYMKKMRVLGHSISYLVFNRLIILNSSPG 144
              P  Y    +Y  L+  C  +G ++  LSL +  + + +G   S   FN LI      G
Sbjct: 762  ISPDGY----IYCILIDGCGKEGNLEKALSLFHEAQQKSVG---SLSAFNSLIDSFCKHG 814

Query: 145  RRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYC 204
            +      +   M   K+ P++ T+ IL+        +E   +++ DM+   + PN ++Y 
Sbjct: 815  KVIEARELFDDMVDKKLTPNIVTYTILIDAYGKAEMMEEAEQLFLDMETRNIIPNTLTYT 874

Query: 205  -ILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQE 263
             +L + + +   + +   + +   + +  +    +   ++   Y  +GK LE +      
Sbjct: 875  SLLLSYNQIGNRFKMISLFKDMEARGIACD---AIAYGVMASAYCKEGKSLEAL------ 925

Query: 264  LPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKA 323
                             ++   S  E + LE          + ++++I   CK   I   
Sbjct: 926  -----------------KLLNKSLVEGIKLE---------DDVFDALIFHLCKEKQISTV 959

Query: 324  SGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLET 383
              LL EM       ++ T   L LG +KS   +E  K L +  +L           W+ T
Sbjct: 960  LELLSEMGKEELSLSSKTCNTLLLGFYKSGNEDEASKVLGVMQRL----------GWVPT 1009

Query: 384  TLSIIE 389
            +LS+ +
Sbjct: 1010 SLSLTD 1015


>gi|115454009|ref|NP_001050605.1| Os03g0597200 [Oryza sativa Japonica Group]
 gi|28875991|gb|AAO60000.1| putative pentatricopeptide repeat protein [Oryza sativa Japonica
           Group]
 gi|108709658|gb|ABF97453.1| DEAD/DEAH box helicase family protein, putative, expressed [Oryza
           sativa Japonica Group]
 gi|113549076|dbj|BAF12519.1| Os03g0597200 [Oryza sativa Japonica Group]
          Length = 742

 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 75/309 (24%), Positives = 132/309 (42%), Gaps = 22/309 (7%)

Query: 123 VLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIE 182
           + G     +V+N L+ +     + K + ++  +M A  + P V TF+ LMK     H + 
Sbjct: 139 LFGIQADTVVYNHLLNVLVEGSKMKLLESVYSEMGARGIKPDVVTFNTLMKALCRAHQVR 198

Query: 183 GLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMT-----GNNWST 237
             + +  +M    V P+E ++  L           V E  +EA  +        G + + 
Sbjct: 199 TAVLMLEEMSSRGVAPDETTFTTLMQGF-------VEEGSIEAALRVKARMLEMGCSATK 251

Query: 238 LDVLIILYGYLAKGKDLERIWATVQELPN---VRSKSYVLAIEAFGRIAQVSRAEELWLE 294
           + V +++ GY   G+  + +    QE+ +       +Y   +    +   V  A ++   
Sbjct: 252 VTVNVLINGYCKLGRVEDALGYIQQEIADGFEPDQITYNTFVNGLCQNDHVGHALKVMDV 311

Query: 295 MQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNL 354
           M           YN V++  CKNG +++A G+L +M   GC P+  T+  L       N 
Sbjct: 312 MVQEGHDPDVFTYNIVVNCLCKNGQLEEAKGILNQMVDRGCLPDITTFNTLIAALCTGNR 371

Query: 355 VEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTK 414
           +EE   AL+L  ++     V+  +P + T   +I    + GD   A  LFEE+K +  T 
Sbjct: 372 LEE---ALDLARQV----TVKGVSPDVYTFNILINALCKVGDPHLALRLFEEMKNSGCTP 424

Query: 415 YTFVYNTLI 423
               YNTLI
Sbjct: 425 DEVTYNTLI 433



 Score = 75.9 bits (185), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 77/362 (21%), Positives = 140/362 (38%), Gaps = 43/362 (11%)

Query: 94  NELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNIL 153
           +++ YN  V        +  +L+ M  M   GH      +N ++      G+ +    IL
Sbjct: 285 DQITYNTFVNGLCQNDHVGHALKVMDVMVQEGHDPDVFTYNIVVNCLCKNGQLEEAKGIL 344

Query: 154 RQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVA 213
            QM      P ++TF+ L+      + +E  + +   +    V P+  ++ IL  A    
Sbjct: 345 NQMVDRGCLPDITTFNTLIAALCTGNRLEEALDLARQVTVKGVSPDVYTFNILINA---- 400

Query: 214 RLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSKSYV 273
            L  V + ++         N+  T D +                             +Y 
Sbjct: 401 -LCKVGDPHLALRLFEEMKNSGCTPDEV-----------------------------TYN 430

Query: 274 LAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMN 333
             I+    + ++ +A +L  +M+S    ++T  YN++I   CK   I++A  +  +M + 
Sbjct: 431 TLIDNLCSLGKLGKALDLLKDMESTGCPRSTITYNTIIDGLCKKMRIEEAEEVFDQMDLQ 490

Query: 334 GCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAE 393
           G   NAIT+  L  G  K   +++ F       +LI         P   T  SI+  + +
Sbjct: 491 GISRNAITFNTLIDGLCKDKKIDDAF-------ELINQMISEGLQPNNITYNSILTHYCK 543

Query: 394 KGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKINDPNL--LRRMILGGARPDAET 451
           +GD+  A ++ E +    +      Y TLI    KA      L  LR M + G RP  + 
Sbjct: 544 QGDIKKAADILETMTANGFEVDVVTYGTLINGLCKAGRTQVALKVLRGMRIKGMRPTPKA 603

Query: 452 YS 453
           Y+
Sbjct: 604 YN 605



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 98/405 (24%), Positives = 169/405 (41%), Gaps = 59/405 (14%)

Query: 94  NELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNIL 153
           + ++YN+L+   ++   +KL      +M   G     + FN L+       + +T   +L
Sbjct: 145 DTVVYNHLLNVLVEGSKMKLLESVYSEMGARGIKPDVVTFNTLMKALCRAHQVRTAVLML 204

Query: 154 RQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVS-------YCIL 206
            +M +  VAP  +TF  LM+    + +IE  ++V + M        +V+       YC L
Sbjct: 205 EEMSSRGVAPDETTFTTLMQGFVEEGSIEAALRVKARMLEMGCSATKVTVNVLINGYCKL 264

Query: 207 A------------TAHAVARLYTVAETYVEAL-EKSMTGNNWSTLDVLI----------- 242
                         A           T+V  L +    G+    +DV++           
Sbjct: 265 GRVEDALGYIQQEIADGFEPDQITYNTFVNGLCQNDHVGHALKVMDVMVQEGHDPDVFTY 324

Query: 243 -ILYGYLAKGKDLERIWATVQE------LPNVRSKSYVLAIEAFGRIAQVSRAEE-LWLE 294
            I+   L K   LE     + +      LP++ + + ++A    G     +R EE L L 
Sbjct: 325 NIVVNCLCKNGQLEEAKGILNQMVDRGCLPDITTFNTLIAALCTG-----NRLEEALDLA 379

Query: 295 MQSVKQLKATEQY--NSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKS 352
            Q   +  + + Y  N +I+  CK G    A  L +EM  +GC P+ +TY  L       
Sbjct: 380 RQVTVKGVSPDVYTFNILINALCKVGDPHLALRLFEEMKNSGCTPDEVTYNTLI-----D 434

Query: 353 NLVEEG--FKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKA 410
           NL   G   KAL+L   + +T   RS+     T  +II+   +K  +  AE +F+++   
Sbjct: 435 NLCSLGKLGKALDLLKDMESTGCPRSTI----TYNTIIDGLCKKMRIEEAEEVFDQMDLQ 490

Query: 411 NYTKYTFVYNTLIKAYVK-AKINDP-NLLRRMILGGARPDAETYS 453
             ++    +NTLI    K  KI+D   L+ +MI  G +P+  TY+
Sbjct: 491 GISRNAITFNTLIDGLCKDKKIDDAFELINQMISEGLQPNNITYN 535



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 65/296 (21%), Positives = 122/296 (41%), Gaps = 20/296 (6%)

Query: 87  CIPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRR 146
           C P    +E+ YN L+      G +  +L+ +K M   G   S + +N +I       R 
Sbjct: 422 CTP----DEVTYNTLIDNLCSLGKLGKALDLLKDMESTGCPRSTITYNTIIDGLCKKMRI 477

Query: 147 KTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCIL 206
           +    +  QM    ++ +  TF+ L+     D  I+   ++ + M    ++PN ++Y  +
Sbjct: 478 EEAEEVFDQMDLQGISRNAITFNTLIDGLCKDKKIDDAFELINQMISEGLQPNNITYNSI 537

Query: 207 ATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKG-KDLERIWATVQELP 265
            T +        A   +E    +MT N +   +V ++ YG L  G     R    ++ L 
Sbjct: 538 LTHYCKQGDIKKAADILE----TMTANGF---EVDVVTYGTLINGLCKAGRTQVALKVLR 590

Query: 266 NVR-------SKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNG 318
            +R        K+Y   +++  R   +  A  L+ EM  V +      Y  V    C+ G
Sbjct: 591 GMRIKGMRPTPKAYNPVLQSLFRRNNIRDALSLFREMAEVGEPPDALTYKIVFRGLCRGG 650

Query: 319 F-IDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKK 373
             I +A   + EM   G  P   ++R LA G     + +   +A+E+ M+ +  ++
Sbjct: 651 GPIKEAFDFMLEMVDKGFIPEFSSFRMLAEGLLNLGMDDYFIRAIEIIMEKVDLRE 706


>gi|326533934|dbj|BAJ93740.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 489

 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 89/433 (20%), Positives = 189/433 (43%), Gaps = 12/433 (2%)

Query: 1   IERLPRGEPVG---SAFQSWMREGFPVHRGEIFHSINRLRKLQLNKRALEVMEWVIRERP 57
           + +LP   P+G   +    W+ E  P+   ++   + +LR  + ++RALE+M+W +  R 
Sbjct: 42  LSKLPPAAPLGCVAAELDRWLCERKPLCGHQLLFYVRKLRNFRQHRRALELMDW-MEARG 100

Query: 58  YRPKELDYSYLLEFTIKNHGISQGEKLFCCIPKDYQNELLYNNLVIACLDKGVIKLSLEY 117
                 D++  L+     +G+   E+ F  +P  Y++   Y++L + C  +   + +LE 
Sbjct: 101 ANLLPGDHALRLDLICTVNGLEAAEEYFLSLPDMYKSVKTYSSL-LHCYAEHKAEKALEL 159

Query: 118 MKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEAN 177
            +KMR +    + LV+  L+ L    G+ + I     +M+A+ V     T+++L +    
Sbjct: 160 YEKMRTMNIVPNTLVYKNLMSLYLKTGQPEKILQTFEEMRANGVRTDNFTYYMLTESHIM 219

Query: 178 DHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWST 237
            + +E   K   D+++S +  +   Y  LA ++     +  A   ++  E+ M       
Sbjct: 220 LNGLESTEKFLEDLEKS-IPVHWSLYTRLADSYNKVGQFDKAGLTLKKAEEVMDRGEMFA 278

Query: 238 LDVLIILYGYLAKGKDLERIWATVQ-ELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQ 296
              L+ LY       +++R+W++++ EL    ++SY++ + A  ++      ++++ E +
Sbjct: 279 WHNLLSLYASSGNLSEVKRVWSSLRSELKISSNRSYLVMLSALKKLDDFDCMQQVFQEWE 338

Query: 297 SVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVE 356
             ++       N +I  Y      D+A   L++ +M     N +T+        + +  E
Sbjct: 339 LTQESYDMRIPNVMIKAYLAKDMTDEAEA-LRQTAMAQGHSNPLTFYIFTESYLEKSRTE 397

Query: 357 EGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYT 416
              +      K++ T    +  P  E     ++ F E  DV   E+    L+K      T
Sbjct: 398 AALEVWRDAGKMVKTP---NWAPPPELVKRFLKHFEEAKDVDGMESFCACLEKLECLD-T 453

Query: 417 FVYNTLIKAYVKA 429
              + L + YV A
Sbjct: 454 DARDALSRTYVAA 466


>gi|115440343|ref|NP_001044451.1| Os01g0783100 [Oryza sativa Japonica Group]
 gi|20804869|dbj|BAB92551.1| putative PPR protein [Oryza sativa Japonica Group]
 gi|113533982|dbj|BAF06365.1| Os01g0783100 [Oryza sativa Japonica Group]
          Length = 684

 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 94/413 (22%), Positives = 174/413 (42%), Gaps = 35/413 (8%)

Query: 58  YRPKELDYSYLLEFTIKNHGISQGEKLFC------CIPKDYQNELLYNNLVIACLDKGVI 111
           ++P  + Y+ +L+           E+LF       C+P    NE+ ++ LV      G++
Sbjct: 246 FQPDTVSYTTVLKGLCAAKRWEDVEELFAEMMEKNCMP----NEVTFDMLVRFFCRGGMV 301

Query: 112 KLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHIL 171
           + +++ +++M   G + +  + N +I      GR       L  M +   +P   ++  +
Sbjct: 302 ERAIQVLEQMSGHGCAANTTLCNIVINTICKQGRVDDAFQFLNNMGSYGCSPDTISYTTV 361

Query: 172 MKIEANDHNIEGLMKVYSDMKRSEVEPNEVSY----CILATAHAVARLYTVAETYVEALE 227
           +K        E   ++  +M R    PNEV++    CIL     + +    A   +E + 
Sbjct: 362 LKGLCRAERWEDAKELLKEMVRKNCPPNEVTFNTFICILCQKGLIEQ----ATMLIEQMS 417

Query: 228 KSMTGNNWSTLDVLIILYGYLAKGK---DLERIWATVQELPNVRSKSYVLAIEAFGRIAQ 284
           +     N  T + L+   G+  +G+    LE  ++   + PN  + +Y   +       +
Sbjct: 418 EHGCEVNIVTYNALV--NGFCVQGRVDSALELFYSMPCK-PN--TITYTTLLTGLCNAER 472

Query: 285 VSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRH 344
           +  A EL  EM           +N ++S +C+ G +D+A  L+++M  +GC PN ITY  
Sbjct: 473 LDAAAELLAEMLQKDCAPNVVTFNVLVSFFCQKGLMDEAIELVEQMMEHGCTPNLITYNT 532

Query: 345 LALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLF 404
           L  G  K    EE   ALEL   L++       +P + T  SII + + +  V  A  +F
Sbjct: 533 LLDGITKDCNSEE---ALELLHGLVSN----GVSPDIVTYSSIIGVLSREDRVEEAIKMF 585

Query: 405 EELKKANYTKYTFVYNTLIKAYVKAKINDP--NLLRRMILGGARPDAETYSLL 455
             ++         +YN ++ A  K    D   +    M+  G  P+  TY  L
Sbjct: 586 HIVQDLGMRPKAVIYNKILLALCKRCNTDGAIDFFAYMVSNGCMPNELTYITL 638



 Score = 73.2 bits (178), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 85/424 (20%), Positives = 164/424 (38%), Gaps = 73/424 (17%)

Query: 98  YNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLI-ILNSSPGRRKTIPNILRQM 156
           Y  ++    D+G +  +L  +  M   G   S + +  L+  +  S G  + +  +L +M
Sbjct: 148 YTPIIRGLCDRGRVGEALSLLDDMLHRGCQPSVVTYTVLLEAVCKSTGFGQAM-EVLDEM 206

Query: 157 KADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSY-CILATAHAVARL 215
           +A    P++ T+++++     +  ++   +  + +     +P+ VSY  +L    A  R 
Sbjct: 207 RAKGCTPNIVTYNVIINGMCREGRVDDAREFLNRLSSYGFQPDTVSYTTVLKGLCAAKRW 266

Query: 216 YTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELP---------- 265
             V E + E +EK+   N   T D+L+    +  +G  +ER    ++++           
Sbjct: 267 EDVEELFAEMMEKNCMPNEV-TFDMLV---RFFCRGGMVERAIQVLEQMSGHGCAANTTL 322

Query: 266 -----NVRSK------------------------SYVLAIEAFGRIAQVSRAEELWLEMQ 296
                N   K                        SY   ++   R  +   A+EL  EM 
Sbjct: 323 CNIVINTICKQGRVDDAFQFLNNMGSYGCSPDTISYTTVLKGLCRAERWEDAKELLKEMV 382

Query: 297 SVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVE 356
                     +N+ I + C+ G I++A+ L+++MS +GC+ N +TY  L  G      V+
Sbjct: 383 RKNCPPNEVTFNTFICILCQKGLIEQATMLIEQMSEHGCEVNIVTYNALVNGFCVQGRVD 442

Query: 357 EGFKA-------------------------LELGMKLITTKKVRSSTPWLETTLSIIEIF 391
              +                          L+   +L+     +   P + T   ++  F
Sbjct: 443 SALELFYSMPCKPNTITYTTLLTGLCNAERLDAAAELLAEMLQKDCAPNVVTFNVLVSFF 502

Query: 392 AEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKINDP--NLLRRMILGGARPDA 449
            +KG +  A  L E++ +   T     YNTL+    K   ++    LL  ++  G  PD 
Sbjct: 503 CQKGLMDEAIELVEQMMEHGCTPNLITYNTLLDGITKDCNSEEALELLHGLVSNGVSPDI 562

Query: 450 ETYS 453
            TYS
Sbjct: 563 VTYS 566



 Score = 62.8 bits (151), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 76/371 (20%), Positives = 144/371 (38%), Gaps = 55/371 (14%)

Query: 125 GHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGL 184
           G ++    +N L+      G+      ++  M    VAP   T+  +++   +   +   
Sbjct: 108 GTAVDVFAYNTLVAGYCRYGQLDAARRLIASMP---VAPDAYTYTPIIRGLCDRGRVGEA 164

Query: 185 MKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLI-- 242
           + +  DM     +P+ V+Y +L  A   +  +  A   ++ +       N  T +V+I  
Sbjct: 165 LSLLDDMLHRGCQPSVVTYTVLLEAVCKSTGFGQAMEVLDEMRAKGCTPNIVTYNVIING 224

Query: 243 --------------------------ILYGYLAKG-------KDLERIWATVQE---LPN 266
                                     + Y  + KG       +D+E ++A + E   +PN
Sbjct: 225 MCREGRVDDAREFLNRLSSYGFQPDTVSYTTVLKGLCAAKRWEDVEELFAEMMEKNCMPN 284

Query: 267 VRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGL 326
               ++ + +  F R   V RA ++  +M        T   N VI+  CK G +D A   
Sbjct: 285 --EVTFDMLVRFFCRGGMVERAIQVLEQMSGHGCAANTTLCNIVINTICKQGRVDDAFQF 342

Query: 327 LKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTL- 385
           L  M   GC P+ I+Y  +  G  ++   E+         K +  + VR + P  E T  
Sbjct: 343 LNNMGSYGCSPDTISYTTVLKGLCRAERWEDA--------KELLKEMVRKNCPPNEVTFN 394

Query: 386 SIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAY-VKAKINDPNLLRRMILGG 444
           + I I  +KG +  A  L E++ +         YN L+  + V+ +++  + L       
Sbjct: 395 TFICILCQKGLIEQATMLIEQMSEHGCEVNIVTYNALVNGFCVQGRVD--SALELFYSMP 452

Query: 445 ARPDAETYSLL 455
            +P+  TY+ L
Sbjct: 453 CKPNTITYTTL 463



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 58/278 (20%), Positives = 115/278 (41%), Gaps = 30/278 (10%)

Query: 94  NELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNIL 153
           NE+ +N  +     KG+I+ +   +++M   G  ++ + +N L+      GR  +   + 
Sbjct: 389 NEVTFNTFICILCQKGLIEQATMLIEQMSEHGCEVNIVTYNALVNGFCVQGRVDSALELF 448

Query: 154 RQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVA 213
             M      P+  T+  L+    N   ++   ++ ++M + +  PN V++ +L +     
Sbjct: 449 YSMPCK---PNTITYTTLLTGLCNAERLDAAAELLAEMLQKDCAPNVVTFNVLVSFFCQK 505

Query: 214 RLYTVAETYVEAL-EKSMTGN--NWSTL-----------DVLIILYGYLAKGKDLERIWA 259
            L   A   VE + E   T N   ++TL           + L +L+G ++ G        
Sbjct: 506 GLMDEAIELVEQMMEHGCTPNLITYNTLLDGITKDCNSEEALELLHGLVSNGVS------ 559

Query: 260 TVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGF 319
                P++ + S ++ +    R  +V  A +++  +Q +        YN ++   CK   
Sbjct: 560 -----PDIVTYSSIIGV--LSREDRVEEAIKMFHIVQDLGMRPKAVIYNKILLALCKRCN 612

Query: 320 IDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEE 357
            D A      M  NGC PN +TY  L  G    + ++E
Sbjct: 613 TDGAIDFFAYMVSNGCMPNELTYITLIEGLANEDFLKE 650


>gi|296087509|emb|CBI34098.3| unnamed protein product [Vitis vinifera]
          Length = 718

 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 91/434 (20%), Positives = 187/434 (43%), Gaps = 42/434 (9%)

Query: 29  IFHSINRLRKLQLNKRALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQGEKLFCCI 88
           + H + +  K++   +A E+++ +I     +P    +  L+E   + H + +  +L    
Sbjct: 86  LIHGLCKFGKME---KAAEILKGMIT-LGCKPNSRTFCLLIEGYCREHNMGRALELL--- 138

Query: 89  PKDYQNELLYNNLVIACLDKGV----------IKLSLEYMKKMRVLGHSISYLVFNRLII 138
                +E+   NLV + +  G           + L+ + ++KM   G   + +V++ LI+
Sbjct: 139 -----DEMEKRNLVPSAVSYGAMINGLCHCKDLSLANKLLEKMTFSGLKPNVVVYSTLIM 193

Query: 139 LNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEP 198
             +S GR +    +L  M    VAP +  ++ ++   +    +E       +++   ++P
Sbjct: 194 GYASEGRIEEARRLLDGMSCSGVAPDIFCYNAIISCLSKAGKMEEASTYLLEIQGRGLKP 253

Query: 199 NEVSYCILATAHA-VARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLE-- 255
           + V++      ++   ++   A+ + E L+  +  NN       +++ G+   G  +E  
Sbjct: 254 DAVTFGAFILGYSKTGKMTEAAKYFDEMLDHGLMPNNPL---YTVLINGHFKAGNLMEAL 310

Query: 256 ---RIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVIS 312
              R    +  LP+V++ S    I    +  +V  A +++ E++    +     Y+S+IS
Sbjct: 311 SIFRHLHALGVLPDVQTCSAF--IHGLLKNGRVQEALKVFSELKEKGLVPDVFTYSSLIS 368

Query: 313 VYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTK 372
            +CK G ++KA  L  EM + G  PN   Y  L  G  KS  ++          KL    
Sbjct: 369 GFCKQGEVEKAFELHDEMCLKGIAPNIFIYNALVDGLCKSGDIQR-------ARKLFDGM 421

Query: 373 KVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKIN 432
             +   P   T  ++I+ + +  +V  A +LF E+       ++FVYN L+    K    
Sbjct: 422 PEKGLEPDSVTYSTMIDGYCKSENVAEAFSLFHEMPSKGVQPHSFVYNALVHGCCKEGDM 481

Query: 433 DP--NLLRRMILGG 444
           +   NL R M+  G
Sbjct: 482 EKAMNLFREMLQKG 495



 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 99/473 (20%), Positives = 178/473 (37%), Gaps = 74/473 (15%)

Query: 44  RALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQGEKLF--CCIPKDYQNELLYNNL 101
           RALE+++  + +R   P  + Y  ++        +S   KL           N ++Y+ L
Sbjct: 133 RALELLDE-MEKRNLVPSAVSYGAMINGLCHCKDLSLANKLLEKMTFSGLKPNVVVYSTL 191

Query: 102 VIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKV 161
           ++    +G I+ +   +  M   G +     +N +I   S  G+ +     L +++   +
Sbjct: 192 IMGYASEGRIEEARRLLDGMSCSGVAPDIFCYNAIISCLSKAGKMEEASTYLLEIQGRGL 251

Query: 162 APHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAET 221
            P   TF   +   +    +    K + +M    + PN   Y +L   H  A     A +
Sbjct: 252 KPDAVTFGAFILGYSKTGKMTEAAKYFDEMLDHGLMPNNPLYTVLINGHFKAGNLMEALS 311

Query: 222 YVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLE--RIWATVQE---LPNVRSKSYVLAI 276
               L       +  T    I  +G L  G+  E  ++++ ++E   +P+V + S +  I
Sbjct: 312 IFRHLHALGVLPDVQTCSAFI--HGLLKNGRVQEALKVFSELKEKGLVPDVFTYSSL--I 367

Query: 277 EAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCK 336
             F +  +V +A EL  EM           YN+++   CK+G I +A  L   M   G +
Sbjct: 368 SGFCKQGEVEKAFELHDEMCLKGIAPNIFIYNALVDGLCKSGDIQRARKLFDGMPEKGLE 427

Query: 337 PNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGD 396
           P+++TY  +  G  KS  V E F        L      +   P      +++    ++GD
Sbjct: 428 PDSVTYSTMIDGYCKSENVAEAFS-------LFHEMPSKGVQPHSFVYNALVHGCCKEGD 480

Query: 397 VGNAENLFEELKKANYTKYTFVYNTLIKAYVKA--------------------------- 429
           +  A NLF E+ +  +   T  +NTLI  Y K+                           
Sbjct: 481 MEKAMNLFREMLQKGFAT-TLSFNTLIDGYCKSCKIQEASQLFQEMIAKQIMPDHVTYTT 539

Query: 430 ---------KINDPNLL------------------RRMILGGARPDAETYSLL 455
                    K+ + NLL                   +M+  G +PD  TY L+
Sbjct: 540 VIDWHCKAGKMEEANLLFKEMQERNLIVDTVFALFEKMVAKGVKPDEVTYGLV 592



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 89/390 (22%), Positives = 156/390 (40%), Gaps = 39/390 (10%)

Query: 101 LVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADK 160
           L+   + +G I   L     M   G  I+ + +N LI      G+ +    IL+ M    
Sbjct: 51  LIDGFMREGDIDEVLRIKDVMVSCGIPINLITYNVLIHGLCKFGKMEKAAEILKGMITLG 110

Query: 161 VAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAE 220
             P+  TF +L++    +HN+   +++  +M++  + P+ VSY  +       +  ++A 
Sbjct: 111 CKPNSRTFCLLIEGYCREHNMGRALELLDEMEKRNLVPSAVSYGAMINGLCHCKDLSLAN 170

Query: 221 TYVEALEKSMTGNNWSTLDVLIILY---GYLAKGKDLERIWATVQELPNVRSKSYVLAIE 277
             +E +  S    N      LI+ Y   G + + + L    +     P++    Y   I 
Sbjct: 171 KLLEKMTFSGLKPNVVVYSTLIMGYASEGRIEEARRLLDGMSCSGVAPDIF--CYNAIIS 228

Query: 278 AFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKP 337
              +  ++  A    LE+Q          + + I  Y K G + +A+    EM  +G  P
Sbjct: 229 CLSKAGKMEEASTYLLEIQGRGLKPDAVTFGAFILGYSKTGKMTEAAKYFDEMLDHGLMP 288

Query: 338 NAITYRHLALGCFKS-NLVE--EGFKALE-LG------------------------MKLI 369
           N   Y  L  G FK+ NL+E    F+ L  LG                        +K+ 
Sbjct: 289 NNPLYTVLINGHFKAGNLMEALSIFRHLHALGVLPDVQTCSAFIHGLLKNGRVQEALKVF 348

Query: 370 TTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKA 429
           +  K +   P + T  S+I  F ++G+V  A  L +E+         F+YN L+    K+
Sbjct: 349 SELKEKGLVPDVFTYSSLISGFCKQGEVEKAFELHDEMCLKGIAPNIFIYNALVDGLCKS 408

Query: 430 KINDPNLLRRMILG----GARPDAETYSLL 455
              D    R++  G    G  PD+ TYS +
Sbjct: 409 --GDIQRARKLFDGMPEKGLEPDSVTYSTM 436



 Score = 44.7 bits (104), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 49/194 (25%), Positives = 82/194 (42%), Gaps = 11/194 (5%)

Query: 264 LPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKA 323
           +PN  + +Y +      R  +++ A+  + EMQ           +++I  + + G ID+ 
Sbjct: 7   VPN--TYTYTIITAGLCRAKRMNEAKLTFEEMQKTGLKPDYNACSALIDGFMREGDIDEV 64

Query: 324 SGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLET 383
             +   M   G   N ITY  L  G  K   +E   KA E+   +IT        P   T
Sbjct: 65  LRIKDVMVSCGIPINLITYNVLIHGLCKFGKME---KAAEILKGMITL----GCKPNSRT 117

Query: 384 TLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAK-INDPN-LLRRMI 441
              +IE +  + ++G A  L +E++K N       Y  +I      K ++  N LL +M 
Sbjct: 118 FCLLIEGYCREHNMGRALELLDEMEKRNLVPSAVSYGAMINGLCHCKDLSLANKLLEKMT 177

Query: 442 LGGARPDAETYSLL 455
             G +P+   YS L
Sbjct: 178 FSGLKPNVVVYSTL 191



 Score = 38.9 bits (89), Expect = 5.9,   Method: Compositional matrix adjust.
 Identities = 71/350 (20%), Positives = 133/350 (38%), Gaps = 27/350 (7%)

Query: 60  PKELDYSYLLEFTIKNHGISQGEKLFCCIPKD--YQNELLYNNLVIACLDKGVIKLSLEY 117
           P    Y+ L++   K+  I +  KLF  +P+     + + Y+ ++        +  +   
Sbjct: 393 PNIFIYNALVDGLCKSGDIQRARKLFDGMPEKGLEPDSVTYSTMIDGYCKSENVAEAFSL 452

Query: 118 MKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEAN 177
             +M   G      V+N L+      G  +   N+ R+M     A  +S F+ L+     
Sbjct: 453 FHEMPSKGVQPHSFVYNALVHGCCKEGDMEKAMNLFREMLQKGFATTLS-FNTLIDGYCK 511

Query: 178 DHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWST 237
              I+   +++ +M   ++ P+ V+Y  +   H  A     A      L K M   N   
Sbjct: 512 SCKIQEASQLFQEMIAKQIMPDHVTYTTVIDWHCKAGKMEEANL----LFKEMQERNLIV 567

Query: 238 LDVLIILYGYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQS 297
             V  +    +AKG   + +             +Y L I A  +   +  A +L  E+  
Sbjct: 568 DTVFALFEKMVAKGVKPDEV-------------TYGLVIYAHCKEDNLVEAFKLRDEVVG 614

Query: 298 VKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEE 357
              L     ++ +I+  CK   + +AS LL EM   G KP+      L     ++  ++E
Sbjct: 615 KGMLTKGTIHDLLITALCKREDLTEASKLLDEMGELGLKPSLAACSTLVRSFHEAGKMDE 674

Query: 358 GFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEEL 407
             +  E G+K +         P   T + ++       D  +A NL ++L
Sbjct: 675 ATRVFE-GVKSL------GLVPDTTTLIDLVNGNLNDTDSEDARNLIKQL 717


>gi|449461223|ref|XP_004148341.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g18940-like [Cucumis sativus]
 gi|449507064|ref|XP_004162923.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g18940-like [Cucumis sativus]
          Length = 844

 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 106/451 (23%), Positives = 198/451 (43%), Gaps = 44/451 (9%)

Query: 28  EIFHSINRLRKLQLNKRALEVMEWVIRERPYRPKELDYSYLLEFTIKNHG----ISQGEK 83
           +I   +  L  L  ++RA+ + EWV+        +LD S  +E  I+  G     S   K
Sbjct: 160 DIVSLLKALDVLGKSERAILLFEWVVSNSVSGDVKLD-SKAVELMIRILGRESKYSIALK 218

Query: 84  LFCCIPKD-YQNELLYNNLVIACLDK-GVIKLSLEYMKKMRVLGHSISYLVFNRLIILNS 141
           L   IP D Y  ++     ++    + G  K ++   ++M+  G S S + +N ++ +  
Sbjct: 219 LLDKIPIDKYSLDVRACTTILHAYSRNGKYKQAIAMFERMKDCGLSPSLVTYNVMLDVYG 278

Query: 142 SPGRR-KTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNE 200
             GR    I ++L +M+ + +     T   ++     +  I    + + ++K S  EP  
Sbjct: 279 KMGRSWDKILDLLDEMRNEGLQFDEFTCSTVISACGREGLINEAKEFFVELKSSGYEPGT 338

Query: 201 VSYCILATAHAVARLYTVAETYVEALE--KSMTGNNWS----TLDVLIILY---GYLAKG 251
           V+Y      +A+ +++  A  Y EAL   K M  NN +    T + L+  Y   G+  +G
Sbjct: 339 VTY------NALLQVFGKAGIYSEALNILKEMEDNNCTLDSVTYNELVAAYVRAGFYEEG 392

Query: 252 KDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVI 311
             +         +PN  + +Y   I A+GR  +  +A +L+ +M+    +     YNS++
Sbjct: 393 ATVIDTMTRKGVMPN--AVTYTTVINAYGRAGKEVKALQLFNQMKKSGCVPNVCTYNSIL 450

Query: 312 SVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGC---FKSNLVEEGFKALELGMKL 368
           ++  K    ++   +L +M +NGC PN IT+  L   C    K   V   F+ +      
Sbjct: 451 ALLGKKSRSEEMIKILSDMRINGCPPNRITWNTLLAMCGDKGKHKFVNHVFREM------ 504

Query: 369 ITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVK 428
               K     P  +T  ++I  +   G   +A  +++E+ KA +T     YN L+ A   
Sbjct: 505 ----KNCGFEPGKDTFNTLISAYGRCGSELDAAKMYDEMMKAGFTPCATTYNALLNAL-- 558

Query: 429 AKIND----PNLLRRMILGGARPDAETYSLL 455
           A+  D     ++L  M   G +P+  ++SL+
Sbjct: 559 ARRGDWKAAESVLLDMRNKGFKPNETSFSLM 589



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 70/347 (20%), Positives = 141/347 (40%), Gaps = 16/347 (4%)

Query: 87  CIPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRR 146
           C P    N + +N L+  C DKG  K      ++M+  G       FN LI      G  
Sbjct: 474 CPP----NRITWNTLLAMCGDKGKHKFVNHVFREMKNCGFEPGKDTFNTLISAYGRCGSE 529

Query: 147 KTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCIL 206
                +  +M      P  +T++ L+   A   + +    V  DM+    +PNE S+ ++
Sbjct: 530 LDAAKMYDEMMKAGFTPCATTYNALLNALARRGDWKAAESVLLDMRNKGFKPNETSFSLM 589

Query: 207 ATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQE--- 263
              +A        E   + +       +W  L  LI+        + +ER +  + +   
Sbjct: 590 LHCYAKGGNVRGLERIGKDIYDGQIFPSWVLLRTLILANFKCRAVRGMERAFEELMKNGY 649

Query: 264 LPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKA 323
            P++   + +L+I  F +     RA+++   ++          YNS++++Y + G   KA
Sbjct: 650 KPDMVIFNSMLSI--FAKNNMYERAQKMLDLIRESGLQPDLVTYNSLMNMYARRGECWKA 707

Query: 324 SGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLET 383
             +LK +  +G  P+ ++Y  +  G  +  L++E  +     M  +TT+ +    P + T
Sbjct: 708 EEILKGLIKSGESPDLVSYNTIIKGFCRQGLMQEAIRV----MSEMTTRGI---CPCIFT 760

Query: 384 TLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAK 430
             + +  +A +G     + +   + + N       Y  ++  Y KA+
Sbjct: 761 YNTFVSGYAGRGMFAEVDEVISYMIQKNCKPNELTYKIIVDGYCKAR 807



 Score = 48.5 bits (114), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 56/289 (19%), Positives = 119/289 (41%), Gaps = 6/289 (2%)

Query: 98  YNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMK 157
           YN L+ A   +G  K +   +  MR  G   +   F+ ++   +  G  + +  I + + 
Sbjct: 551 YNALLNALARRGDWKAAESVLLDMRNKGFKPNETSFSLMLHCYAKGGNVRGLERIGKDIY 610

Query: 158 ADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYT 217
             ++ P       L+        + G+ + + ++ ++  +P+ V +  + +  A   +Y 
Sbjct: 611 DGQIFPSWVLLRTLILANFKCRAVRGMERAFEELMKNGYKPDMVIFNSMLSIFAKNNMYE 670

Query: 218 VAETYVEALEKSMTGNNWSTLDVLIILY---GYLAKGKDLERIWATVQELPNVRSKSYVL 274
            A+  ++ + +S    +  T + L+ +Y   G   K +++ +      E P++   SY  
Sbjct: 671 RAQKMLDLIRESGLQPDLVTYNSLMNMYARRGECWKAEEILKGLIKSGESPDL--VSYNT 728

Query: 275 AIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNG 334
            I+ F R   +  A  +  EM +         YN+ +S Y   G   +   ++  M    
Sbjct: 729 IIKGFCRQGLMQEAIRVMSEMTTRGICPCIFTYNTFVSGYAGRGMFAEVDEVISYMIQKN 788

Query: 335 CKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLET 383
           CKPN +TY+ +  G  K+   ++    +  G+K I       ST  L +
Sbjct: 789 CKPNELTYKIIVDGYCKARKYQDAMDFI-FGIKNIDDSFDNHSTQRLAS 836


>gi|125544747|gb|EAY90886.1| hypothetical protein OsI_12495 [Oryza sativa Indica Group]
          Length = 742

 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 75/309 (24%), Positives = 132/309 (42%), Gaps = 22/309 (7%)

Query: 123 VLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIE 182
           + G     +V+N L+ +     + K + ++  +M A  + P V TF+ LMK     H + 
Sbjct: 139 LFGIQADTVVYNHLLNVLVEGSKMKLLESVYSEMGARGIKPDVVTFNTLMKALCRAHQVR 198

Query: 183 GLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMT-----GNNWST 237
             + +  +M    V P+E ++  L           V E  +EA  +        G + + 
Sbjct: 199 TAVIMLEEMSSRGVAPDETTFTTLMQGF-------VEEGSIEAALRVKARMLEMGCSATK 251

Query: 238 LDVLIILYGYLAKGKDLERIWATVQELPN---VRSKSYVLAIEAFGRIAQVSRAEELWLE 294
           + V +++ GY   G+  + +    QE+ +       +Y   +    +   V  A ++   
Sbjct: 252 VTVNVLINGYCKLGRVEDALGYIQQEIADGFEPDQITYNTFVNGLCQNDHVGHALKVMDV 311

Query: 295 MQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNL 354
           M           YN V++  CKNG +++A G+L +M   GC P+  T+  L       N 
Sbjct: 312 MVQEGHDPDVFTYNIVVNCLCKNGQLEEAKGILNQMVDRGCLPDITTFNTLIAALCTGNR 371

Query: 355 VEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTK 414
           +EE   AL+L  ++     V+  +P + T   +I    + GD   A  LFEE+K +  T 
Sbjct: 372 LEE---ALDLARQV----TVKGVSPDVYTFNILINALCKVGDPHLALRLFEEMKNSGCTP 424

Query: 415 YTFVYNTLI 423
               YNTLI
Sbjct: 425 DEVTYNTLI 433



 Score = 75.5 bits (184), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 77/362 (21%), Positives = 140/362 (38%), Gaps = 43/362 (11%)

Query: 94  NELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNIL 153
           +++ YN  V        +  +L+ M  M   GH      +N ++      G+ +    IL
Sbjct: 285 DQITYNTFVNGLCQNDHVGHALKVMDVMVQEGHDPDVFTYNIVVNCLCKNGQLEEAKGIL 344

Query: 154 RQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVA 213
            QM      P ++TF+ L+      + +E  + +   +    V P+  ++ IL  A    
Sbjct: 345 NQMVDRGCLPDITTFNTLIAALCTGNRLEEALDLARQVTVKGVSPDVYTFNILINA---- 400

Query: 214 RLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSKSYV 273
            L  V + ++         N+  T D +                             +Y 
Sbjct: 401 -LCKVGDPHLALRLFEEMKNSGCTPDEV-----------------------------TYN 430

Query: 274 LAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMN 333
             I+    + ++ +A +L  +M+S    ++T  YN++I   CK   I++A  +  +M + 
Sbjct: 431 TLIDNLCSLGKLGKALDLLKDMESTGCPRSTITYNTIIDGLCKKMRIEEAEEVFDQMDLQ 490

Query: 334 GCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAE 393
           G   NAIT+  L  G  K   +++ F       +LI         P   T  SI+  + +
Sbjct: 491 GISRNAITFNTLIDGLCKDKKIDDAF-------ELINQMISEGLQPNNITYNSILTHYCK 543

Query: 394 KGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKINDPNL--LRRMILGGARPDAET 451
           +GD+  A ++ E +    +      Y TLI    KA      L  LR M + G RP  + 
Sbjct: 544 QGDIKKAADILETMTANGFEVDVVTYGTLINGLCKAGRTQVALKVLRGMRIKGMRPTPKA 603

Query: 452 YS 453
           Y+
Sbjct: 604 YN 605



 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 98/405 (24%), Positives = 169/405 (41%), Gaps = 59/405 (14%)

Query: 94  NELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNIL 153
           + ++YN+L+   ++   +KL      +M   G     + FN L+       + +T   +L
Sbjct: 145 DTVVYNHLLNVLVEGSKMKLLESVYSEMGARGIKPDVVTFNTLMKALCRAHQVRTAVIML 204

Query: 154 RQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVS-------YCIL 206
            +M +  VAP  +TF  LM+    + +IE  ++V + M        +V+       YC L
Sbjct: 205 EEMSSRGVAPDETTFTTLMQGFVEEGSIEAALRVKARMLEMGCSATKVTVNVLINGYCKL 264

Query: 207 A------------TAHAVARLYTVAETYVEAL-EKSMTGNNWSTLDVLI----------- 242
                         A           T+V  L +    G+    +DV++           
Sbjct: 265 GRVEDALGYIQQEIADGFEPDQITYNTFVNGLCQNDHVGHALKVMDVMVQEGHDPDVFTY 324

Query: 243 -ILYGYLAKGKDLERIWATVQE------LPNVRSKSYVLAIEAFGRIAQVSRAEE-LWLE 294
            I+   L K   LE     + +      LP++ + + ++A    G     +R EE L L 
Sbjct: 325 NIVVNCLCKNGQLEEAKGILNQMVDRGCLPDITTFNTLIAALCTG-----NRLEEALDLA 379

Query: 295 MQSVKQLKATEQY--NSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKS 352
            Q   +  + + Y  N +I+  CK G    A  L +EM  +GC P+ +TY  L       
Sbjct: 380 RQVTVKGVSPDVYTFNILINALCKVGDPHLALRLFEEMKNSGCTPDEVTYNTLI-----D 434

Query: 353 NLVEEG--FKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKA 410
           NL   G   KAL+L   + +T   RS+     T  +II+   +K  +  AE +F+++   
Sbjct: 435 NLCSLGKLGKALDLLKDMESTGCPRSTI----TYNTIIDGLCKKMRIEEAEEVFDQMDLQ 490

Query: 411 NYTKYTFVYNTLIKAYVK-AKINDP-NLLRRMILGGARPDAETYS 453
             ++    +NTLI    K  KI+D   L+ +MI  G +P+  TY+
Sbjct: 491 GISRNAITFNTLIDGLCKDKKIDDAFELINQMISEGLQPNNITYN 535



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 65/296 (21%), Positives = 122/296 (41%), Gaps = 20/296 (6%)

Query: 87  CIPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRR 146
           C P    +E+ YN L+      G +  +L+ +K M   G   S + +N +I       R 
Sbjct: 422 CTP----DEVTYNTLIDNLCSLGKLGKALDLLKDMESTGCPRSTITYNTIIDGLCKKMRI 477

Query: 147 KTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCIL 206
           +    +  QM    ++ +  TF+ L+     D  I+   ++ + M    ++PN ++Y  +
Sbjct: 478 EEAEEVFDQMDLQGISRNAITFNTLIDGLCKDKKIDDAFELINQMISEGLQPNNITYNSI 537

Query: 207 ATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKG-KDLERIWATVQELP 265
            T +        A   +E    +MT N +   +V ++ YG L  G     R    ++ L 
Sbjct: 538 LTHYCKQGDIKKAADILE----TMTANGF---EVDVVTYGTLINGLCKAGRTQVALKVLR 590

Query: 266 NVR-------SKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNG 318
            +R        K+Y   +++  R   +  A  L+ EM  V +      Y  V    C+ G
Sbjct: 591 GMRIKGMRPTPKAYNPVLQSLFRRNNIRDALSLFREMAEVGEPPDALTYKIVFRGLCRGG 650

Query: 319 F-IDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKK 373
             I +A   + EM   G  P   ++R LA G     + +   +A+E+ M+ +  ++
Sbjct: 651 GPIKEAFDFMLEMVDKGFIPEFSSFRMLAEGLLNLGMDDYFIRAIEIIMEKVDLRE 706


>gi|357439849|ref|XP_003590202.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355479250|gb|AES60453.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 772

 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 90/335 (26%), Positives = 144/335 (42%), Gaps = 59/335 (17%)

Query: 132 VFNRLIILNSSPGR--RKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYS 189
           VF    +LN+  GR  RK +  IL+ M+ ++V   V+T+ IL++  ++  +IE   K++ 
Sbjct: 252 VFTYNTLLNAYVGRKDRKGVDEILKLMEKEQVVFSVATYSILIQWYSSSGDIEEAEKIFE 311

Query: 190 DMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLA 249
           +M+   +E +   Y                         SM   +WS             
Sbjct: 312 EMREKNIEMDVYVY------------------------SSMI--SWSR------------ 333

Query: 250 KGKDLERIWATVQEL------PNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKA 303
           +  +++R +A   E+      PN  + +Y   I    +  Q+  AE L LEMQS      
Sbjct: 334 RLGNMKRAFALFDEMSQRDIVPN--AHTYGALIGGVCKAGQMEAAEILLLEMQSKGVDLN 391

Query: 304 TEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALE 363
              +N+ +  YC+ G +D+A  L   M   G   +  TY  LA G  K +  +E      
Sbjct: 392 LVIFNTTMDGYCRRGKMDEALRLQAIMEKKGINADVFTYNILANGLCKLHRYDEA----- 446

Query: 364 LGMKLITTKKV-RSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTL 422
              K I    V +   P + T    IEI+ ++G++  AE LF +++K         YNTL
Sbjct: 447 ---KCILNSMVEKGVKPNVVTFTMFIEIYCKEGNLAEAERLFRDMEKKGEVPNIITYNTL 503

Query: 423 IKAYVKA-KINDPNLLR-RMILGGARPDAETYSLL 455
           I AY K  K+   + ++  MI  G  PD  TYS L
Sbjct: 504 IDAYCKKEKVKQAHKIKSEMINKGLLPDLYTYSSL 538



 Score = 58.5 bits (140), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 58/239 (24%), Positives = 108/239 (45%), Gaps = 7/239 (2%)

Query: 144 GRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSY 203
           G+ +    +L +M++  V  ++  F+  M        ++  +++ + M++  +  +  +Y
Sbjct: 371 GQMEAAEILLLEMQSKGVDLNLVIFNTTMDGYCRRGKMDEALRLQAIMEKKGINADVFTY 430

Query: 204 CILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILY---GYLAKGKDLERIWAT 260
            ILA        Y  A+  + ++ +     N  T  + I +Y   G LA+ + L R    
Sbjct: 431 NILANGLCKLHRYDEAKCILNSMVEKGVKPNVVTFTMFIEIYCKEGNLAEAERLFRDMEK 490

Query: 261 VQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFI 320
             E+PN+   +Y   I+A+ +  +V +A ++  EM +   L     Y+S+I   C  G +
Sbjct: 491 KGEVPNI--ITYNTLIDAYCKKEKVKQAHKIKSEMINKGLLPDLYTYSSLIHGECIVGRV 548

Query: 321 DKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMK--LITTKKVRSS 377
           D+A  L  EM + G   N  TY  +  G  K    +E FK  +  MK  LI   +V +S
Sbjct: 549 DEALKLFNEMRLKGITRNVATYTSMISGLSKEGRADEAFKLYDEMMKIGLIPDDRVFTS 607



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 35/115 (30%), Positives = 61/115 (53%), Gaps = 8/115 (6%)

Query: 310 VISVYCKNGFIDKASGLLKEMSMNG-CKPNAITYRHLALGCFKSNLVEEGFKALELGMKL 368
           VI V C+ G ++KA  L+ EM   G  KPN  TY  L      + +  +  K ++  +KL
Sbjct: 222 VIDVLCRRGEVEKAKELMDEMVGKGIVKPNVFTYNTL----LNAYVGRKDRKGVDEILKL 277

Query: 369 ITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLI 423
           +  ++V  S     T   +I+ ++  GD+  AE +FEE+++ N     +VY+++I
Sbjct: 278 MEKEQVVFSVA---TYSILIQWYSSSGDIEEAEKIFEEMREKNIEMDVYVYSSMI 329



 Score = 41.6 bits (96), Expect = 0.94,   Method: Compositional matrix adjust.
 Identities = 59/269 (21%), Positives = 106/269 (39%), Gaps = 6/269 (2%)

Query: 94  NELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNIL 153
           N   Y  L+      G ++ +   + +M+  G  ++ ++FN  +      G+      + 
Sbjct: 356 NAHTYGALIGGVCKAGQMEAAEILLLEMQSKGVDLNLVIFNTTMDGYCRRGKMDEALRLQ 415

Query: 154 RQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVA 213
             M+   +   V T++IL       H  +    + + M    V+PN V++ +    +   
Sbjct: 416 AIMEKKGINADVFTYNILANGLCKLHRYDEAKCILNSMVEKGVKPNVVTFTMFIEIYCKE 475

Query: 214 RLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQE---LPNVRSK 270
                AE     +EK     N  T + LI  Y    K K   +I + +     LP++ + 
Sbjct: 476 GNLAEAERLFRDMEKKGEVPNIITYNTLIDAYCKKEKVKQAHKIKSEMINKGLLPDLYTY 535

Query: 271 SYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEM 330
           S ++  E    + +V  A +L+ EM+     +    Y S+IS   K G  D+A  L  EM
Sbjct: 536 SSLIHGECI--VGRVDEALKLFNEMRLKGITRNVATYTSMISGLSKEGRADEAFKLYDEM 593

Query: 331 SMNGCKPNAITYRHLALGCFKSNLVEEGF 359
              G  P+   +  L +G F   L   G 
Sbjct: 594 MKIGLIPDDRVFTSL-VGSFHKPLTHAGL 621


>gi|125587025|gb|EAZ27689.1| hypothetical protein OsJ_11637 [Oryza sativa Japonica Group]
          Length = 650

 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 75/309 (24%), Positives = 132/309 (42%), Gaps = 22/309 (7%)

Query: 123 VLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIE 182
           + G     +V+N L+ +     + K + ++  +M A  + P V TF+ LMK     H + 
Sbjct: 47  LFGIQADTVVYNHLLNVLVEGSKMKLLESVYSEMGARGIKPDVVTFNTLMKALCRAHQVR 106

Query: 183 GLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMT-----GNNWST 237
             + +  +M    V P+E ++  L           V E  +EA  +        G + + 
Sbjct: 107 TAVLMLEEMSSRGVAPDETTFTTLMQGF-------VEEGSIEAALRVKARMLEMGCSATK 159

Query: 238 LDVLIILYGYLAKGKDLERIWATVQELPN---VRSKSYVLAIEAFGRIAQVSRAEELWLE 294
           + V +++ GY   G+  + +    QE+ +       +Y   +    +   V  A ++   
Sbjct: 160 VTVNVLINGYCKLGRVEDALGYIQQEIADGFEPDQITYNTFVNGLCQNDHVGHALKVMDV 219

Query: 295 MQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNL 354
           M           YN V++  CKNG +++A G+L +M   GC P+  T+  L       N 
Sbjct: 220 MVQEGHDPDVFTYNIVVNCLCKNGQLEEAKGILNQMVDRGCLPDITTFNTLIAALCTGNR 279

Query: 355 VEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTK 414
           +EE   AL+L  ++     V+  +P + T   +I    + GD   A  LFEE+K +  T 
Sbjct: 280 LEE---ALDLARQV----TVKGVSPDVYTFNILINALCKVGDPHLALRLFEEMKNSGCTP 332

Query: 415 YTFVYNTLI 423
               YNTLI
Sbjct: 333 DEVTYNTLI 341



 Score = 75.1 bits (183), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 77/362 (21%), Positives = 140/362 (38%), Gaps = 43/362 (11%)

Query: 94  NELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNIL 153
           +++ YN  V        +  +L+ M  M   GH      +N ++      G+ +    IL
Sbjct: 193 DQITYNTFVNGLCQNDHVGHALKVMDVMVQEGHDPDVFTYNIVVNCLCKNGQLEEAKGIL 252

Query: 154 RQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVA 213
            QM      P ++TF+ L+      + +E  + +   +    V P+  ++ IL  A    
Sbjct: 253 NQMVDRGCLPDITTFNTLIAALCTGNRLEEALDLARQVTVKGVSPDVYTFNILINA---- 308

Query: 214 RLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSKSYV 273
            L  V + ++         N+  T D +                             +Y 
Sbjct: 309 -LCKVGDPHLALRLFEEMKNSGCTPDEV-----------------------------TYN 338

Query: 274 LAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMN 333
             I+    + ++ +A +L  +M+S    ++T  YN++I   CK   I++A  +  +M + 
Sbjct: 339 TLIDNLCSLGKLGKALDLLKDMESTGCPRSTITYNTIIDGLCKKMRIEEAEEVFDQMDLQ 398

Query: 334 GCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAE 393
           G   NAIT+  L  G  K   +++ F       +LI         P   T  SI+  + +
Sbjct: 399 GISRNAITFNTLIDGLCKDKKIDDAF-------ELINQMISEGLQPNNITYNSILTHYCK 451

Query: 394 KGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKINDPNL--LRRMILGGARPDAET 451
           +GD+  A ++ E +    +      Y TLI    KA      L  LR M + G RP  + 
Sbjct: 452 QGDIKKAADILETMTANGFEVDVVTYGTLINGLCKAGRTQVALKVLRGMRIKGMRPTPKA 511

Query: 452 YS 453
           Y+
Sbjct: 512 YN 513



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 95/406 (23%), Positives = 168/406 (41%), Gaps = 61/406 (15%)

Query: 94  NELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNIL 153
           + ++YN+L+   ++   +KL      +M   G     + FN L+       + +T   +L
Sbjct: 53  DTVVYNHLLNVLVEGSKMKLLESVYSEMGARGIKPDVVTFNTLMKALCRAHQVRTAVLML 112

Query: 154 RQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVS-------YCIL 206
            +M +  VAP  +TF  LM+    + +IE  ++V + M        +V+       YC L
Sbjct: 113 EEMSSRGVAPDETTFTTLMQGFVEEGSIEAALRVKARMLEMGCSATKVTVNVLINGYCKL 172

Query: 207 A------------TAHAVARLYTVAETYVEAL-EKSMTGNNWSTLDVLI----------- 242
                         A           T+V  L +    G+    +DV++           
Sbjct: 173 GRVEDALGYIQQEIADGFEPDQITYNTFVNGLCQNDHVGHALKVMDVMVQEGHDPDVFTY 232

Query: 243 -ILYGYLAKGKDLERIWATVQE------LPNVRSKSYVLAIEAFGRIAQVSRAEELWLEM 295
            I+   L K   LE     + +      LP++ + + ++A    G     +R EE  L++
Sbjct: 233 NIVVNCLCKNGQLEEAKGILNQMVDRGCLPDITTFNTLIAALCTG-----NRLEE-ALDL 286

Query: 296 QSVKQLKATE----QYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFK 351
                +K        +N +I+  CK G    A  L +EM  +GC P+ +TY  L      
Sbjct: 287 ARQVTVKGVSPDVYTFNILINALCKVGDPHLALRLFEEMKNSGCTPDEVTYNTLI----- 341

Query: 352 SNLVEEG--FKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKK 409
            NL   G   KAL+L   + +T   RS+  +     +II+   +K  +  AE +F+++  
Sbjct: 342 DNLCSLGKLGKALDLLKDMESTGCPRSTITY----NTIIDGLCKKMRIEEAEEVFDQMDL 397

Query: 410 ANYTKYTFVYNTLIKAYVK-AKINDP-NLLRRMILGGARPDAETYS 453
              ++    +NTLI    K  KI+D   L+ +MI  G +P+  TY+
Sbjct: 398 QGISRNAITFNTLIDGLCKDKKIDDAFELINQMISEGLQPNNITYN 443



 Score = 56.6 bits (135), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 65/296 (21%), Positives = 122/296 (41%), Gaps = 20/296 (6%)

Query: 87  CIPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRR 146
           C P    +E+ YN L+      G +  +L+ +K M   G   S + +N +I       R 
Sbjct: 330 CTP----DEVTYNTLIDNLCSLGKLGKALDLLKDMESTGCPRSTITYNTIIDGLCKKMRI 385

Query: 147 KTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCIL 206
           +    +  QM    ++ +  TF+ L+     D  I+   ++ + M    ++PN ++Y  +
Sbjct: 386 EEAEEVFDQMDLQGISRNAITFNTLIDGLCKDKKIDDAFELINQMISEGLQPNNITYNSI 445

Query: 207 ATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKG-KDLERIWATVQELP 265
            T +        A   +E    +MT N +   +V ++ YG L  G     R    ++ L 
Sbjct: 446 LTHYCKQGDIKKAADILE----TMTANGF---EVDVVTYGTLINGLCKAGRTQVALKVLR 498

Query: 266 NVR-------SKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNG 318
            +R        K+Y   +++  R   +  A  L+ EM  V +      Y  V    C+ G
Sbjct: 499 GMRIKGMRPTPKAYNPVLQSLFRRNNIRDALSLFREMAEVGEPPDALTYKIVFRGLCRGG 558

Query: 319 F-IDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKK 373
             I +A   + EM   G  P   ++R LA G     + +   +A+E+ M+ +  ++
Sbjct: 559 GPIKEAFDFMLEMVDKGFIPEFSSFRMLAEGLLNLGMDDYFIRAIEIIMEKVDLRE 614


>gi|358345906|ref|XP_003637015.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|358347053|ref|XP_003637577.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355502950|gb|AES84153.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355503512|gb|AES84715.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 823

 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 93/398 (23%), Positives = 164/398 (41%), Gaps = 48/398 (12%)

Query: 94  NELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNIL 153
           N   YN L+      G I++  E   +M   G  ++ + FN +I L  + GR + + ++L
Sbjct: 271 NSHTYNTLIDTYGKAGQIRVVYEIFARMIKQGVVLTTVTFNTMIHLYGNHGRIREVSSLL 330

Query: 154 RQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVA 213
           ++M+  +  P   T++IL+ +    +NI    K ++ MK + +EP+ VSY  L  A++  
Sbjct: 331 KRMEELRCLPDTRTYNILISVLVKHNNINLATKYFAKMKEAFLEPDVVSYRTLLYAYSTR 390

Query: 214 RLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIW---ATVQELPNVRSK 270
           ++   AE  V+ +++     +  T   L  +Y    +   LE+ W       +  N+ S 
Sbjct: 391 KMVQEAEEIVQEMDERGLKIDEFTQSALTRMY---VESNMLEKSWLWFMRFHQDGNITSC 447

Query: 271 SYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEM 330
            Y   I+A+G       AE++++  +  K+L     +N +I  Y      DKA  L   M
Sbjct: 448 CYSANIDAYGEKGYTLEAEKVFMCCKERKKLSVL-VFNVMIKAYGIGNCYDKACQLFDCM 506

Query: 331 SMNGCKPNAITYR------------HLA-------------LGCFKSNLVEEGFKAL-EL 364
              G   N  +Y             H+A               C     V   F  L +L
Sbjct: 507 KKFGVAANECSYSSLIHILASADKPHIAKPYLNKMQVAGLVSDCIPYCAVISSFGKLGQL 566

Query: 365 GMK--LITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTL 422
            M   L          P      ++I  FA+  +V  A +  + ++KA +     ++NTL
Sbjct: 567 NMAEGLYNEMIGHDVEPDAIIFGALINAFADVANVKKANSYVDRMRKAGFIGNQAIHNTL 626

Query: 423 IKAYVKAKINDPNLLRRMILGGARPDAETYSLLKLAEQ 460
           +K Y K             LG  +   E Y+LL+ ++Q
Sbjct: 627 MKLYTK-------------LGYLKEAQEIYTLLQSSDQ 651



 Score = 53.5 bits (127), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 76/339 (22%), Positives = 140/339 (41%), Gaps = 59/339 (17%)

Query: 80  QGEKLF-CCIPKDYQNELLYNNLVIA-----CLDKGVIKLSLEYMKKMRVLGHSISYLVF 133
           + EK+F CC  +   + L++N ++ A     C DK       + MKK  V  +  SY   
Sbjct: 464 EAEKVFMCCKERKKLSVLVFNVMIKAYGIGNCYDKAC--QLFDCMKKFGVAANECSY--- 518

Query: 134 NRLIILNSSPGRRKTIPNILRQMKA----DKVAPHVSTFHILMKIEANDHNIEGLMKVYS 189
           + LI + +S  +       L +M+         P+ +      K+    +  EGL   Y+
Sbjct: 519 SSLIHILASADKPHIAKPYLNKMQVAGLVSDCIPYCAVISSFGKL-GQLNMAEGL---YN 574

Query: 190 DMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILY---G 246
           +M   +VEP+ + +  L  A A       A +YV+ + K+    N +  + L+ LY   G
Sbjct: 575 EMIGHDVEPDAIIFGALINAFADVANVKKANSYVDRMRKAGFIGNQAIHNTLMKLYTKLG 634

Query: 247 YLAKGKDLERIWATVQELPNVRSK--------------------------------SYVL 274
           YL + +++  +  +  + P+V S                                 SY +
Sbjct: 635 YLKEAQEIYTLLQSSDQGPSVFSSNCMIDLYTERLMVEQAKEIFESLKKNSIANEFSYAM 694

Query: 275 AIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNG 334
            +  + +I ++  A ++  EM  +  L     YN+V+ +Y  +  + +A    KEM  +G
Sbjct: 695 MLCMYKKIGRLDEAFQIAKEMGKLGFLTDLLSYNNVLGLYSMDRRLWEAKKTFKEMIESG 754

Query: 335 CKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKK 373
            +P+  T+R  ALG     L+  G     +GM  +  K+
Sbjct: 755 IQPDDFTFR--ALGHL---LLSYGVSKRNIGMLEVMVKR 788



 Score = 51.6 bits (122), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 65/289 (22%), Positives = 120/289 (41%), Gaps = 24/289 (8%)

Query: 147 KTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCIL 206
           + + ++  +M  + V P  ST+  L+ + +    IE  +     M+   +EP+EV     
Sbjct: 159 RVLESLWNEMNENGVVPVNSTYGTLIDVYSKGGLIEEALAWLLRMQSEGMEPDEV----- 213

Query: 207 ATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPN 266
            T   V +LY  A  + +A E  +    WS  + L I   +     D  R      E+ +
Sbjct: 214 -TMGVVVQLYKRAGEFQKAEEFFL---RWSRGEPLRIEIDH--NPADTRR--HVCNEVSH 265

Query: 267 V----RSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDK 322
           V     S +Y   I+ +G+  Q+    E++  M     +  T  +N++I +Y  +G I +
Sbjct: 266 VNVCLNSHTYNTLIDTYGKAGQIRVVYEIFARMIKQGVVLTTVTFNTMIHLYGNHGRIRE 325

Query: 323 ASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLE 382
            S LLK M    C P+  TY  L     K N        + L  K     K     P + 
Sbjct: 326 VSSLLKRMEELRCLPDTRTYNILISVLVKHN-------NINLATKYFAKMKEAFLEPDVV 378

Query: 383 TTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKI 431
           +  +++  ++ +  V  AE + +E+ +       F  + L + YV++ +
Sbjct: 379 SYRTLLYAYSTRKMVQEAEEIVQEMDERGLKIDEFTQSALTRMYVESNM 427


>gi|125548508|gb|EAY94330.1| hypothetical protein OsI_16098 [Oryza sativa Indica Group]
          Length = 430

 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 76/331 (22%), Positives = 139/331 (41%), Gaps = 11/331 (3%)

Query: 12  SAFQSWMREGFPVHRGEIFHSINRLRKLQLNKRALEVMEWVIRERPYRPKELDYSYLLEF 71
           +A + W  EG      E+      L +    K ALEV EW+         E DY   ++ 
Sbjct: 94  AALERWAGEGRAASAAELRGIARDLSRAGRYKHALEVAEWMKTHHESDLSENDYGMRIDL 153

Query: 72  TIKNHGISQGEKLFCCIPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYL 131
             +  G +  E  F  +P   Q+   Y  L+ +     +   +    K+M+    S++ L
Sbjct: 154 ITRVFGANAAEDFFEKLPACVQSLEAYTALLHSYARSKMTDKAERLFKRMKDANLSMNIL 213

Query: 132 VFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDM 191
           V+N ++ L  S G    +P I  ++K  K +P + T+++ +   A   ++EG   +  +M
Sbjct: 214 VYNEMMTLYISVGELDKVPVIAEELKRQKFSPDLFTYNLRISASAASMDLEGFKGILDEM 273

Query: 192 KRSEVEPNEVS----YCILATAHAVA-RLYTVAETYVEALEKSMTGNNWSTLDVLIILYG 246
            +   +PN       Y  LA  +  A +L     + VEA E  ++   W T D L+IL+ 
Sbjct: 274 SK---DPNSNEGWKLYQNLAVIYVDAGQLVGSGNSLVEA-EAKISQREWITYDFLVILHT 329

Query: 247 YLAKGKDLERIWAT-VQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLK-AT 304
            L     ++ IW + +     + S++Y+  + ++    Q+  A E+  + Q  K  +   
Sbjct: 330 GLGNRDRIKDIWKSMLMTSQRMTSRNYICVLSSYLMCGQLKDAGEVIDQWQRSKAPEFDI 389

Query: 305 EQYNSVISVYCKNGFIDKASGLLKEMSMNGC 335
              N +   +   GF D A+   + M    C
Sbjct: 390 SACNRLFDAFLNAGFTDTANSFRELMLQKSC 420



 Score = 42.4 bits (98), Expect = 0.50,   Method: Compositional matrix adjust.
 Identities = 48/207 (23%), Positives = 95/207 (45%), Gaps = 18/207 (8%)

Query: 218 VAETYVEALEKSMTGNNWST-LDVLIILYGYLAKGKDLERIWATVQELPNVRSKSYVLAI 276
           VAE      E  ++ N++   +D++  ++G  A     E++ A VQ L     ++Y   +
Sbjct: 130 VAEWMKTHHESDLSENDYGMRIDLITRVFGANAAEDFFEKLPACVQSL-----EAYTALL 184

Query: 277 EAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCK 336
            ++ R     +AE L+  M+          YN ++++Y   G +DK   + +E+      
Sbjct: 185 HSYARSKMTDKAERLFKRMKDANLSMNILVYNEMMTLYISVGELDKVPVIAEELKRQKFS 244

Query: 337 PNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPW-LETTLSIIEIFAEKG 395
           P+  TY +L +    +++  EGFK +   M    +K   S+  W L   L++  I+ + G
Sbjct: 245 PDLFTY-NLRISASAASMDLEGFKGILDEM----SKDPNSNEGWKLYQNLAV--IYVDAG 297

Query: 396 D-VGNAENLFE---ELKKANYTKYTFV 418
             VG+  +L E   ++ +  +  Y F+
Sbjct: 298 QLVGSGNSLVEAEAKISQREWITYDFL 324


>gi|224130976|ref|XP_002320971.1| predicted protein [Populus trichocarpa]
 gi|222861744|gb|EEE99286.1| predicted protein [Populus trichocarpa]
          Length = 473

 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 98/456 (21%), Positives = 197/456 (43%), Gaps = 18/456 (3%)

Query: 7   GEPVGSAFQSWMREGFPVHRGEIFHSINRLRKLQLNKRALEVMEWVIRERPYRPKELDYS 66
           GE V      ++ EG   ++ ++   I  LRK      A+EVMEW+ +    R   + ++
Sbjct: 26  GESVSKTLNDFVLEGGKTNKVDLLACIRELRKYGRFDYAIEVMEWMQK----RKMNVSHA 81

Query: 67  YLLEFTIKNHGISQGEKLFCCIPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGH 126
             L+   K  GI+  E  F  +    QN   +  L+     + + + +L   +KM  +  
Sbjct: 82  VYLDLIAKKEGIAAAENYFDGLSPSEQNHSTHGALLSCYCRELMSEKALTLFEKMDKMKF 141

Query: 127 SISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMK 186
            ++ L FN LI L+    + + +  I+++MK   V+P   T+++ M+     ++ EG+ +
Sbjct: 142 LLTSLPFNNLISLHLRLDQPEKVLPIVQEMKQKGVSPCTFTYNMWMQSYGCLNDFEGVER 201

Query: 187 VYSDMK-RSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILY 245
           V  +MK   +   +  +Y  LAT +  A  +  AE+ ++ +E+ +  +       LI LY
Sbjct: 202 VLDEMKMDGQKNFSWTTYTNLATIYVKAGHFDKAESALKKVEEQIERDYREAYHFLITLY 261

Query: 246 GYLAKGKDLERIWATVQE-LPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKAT 304
              +   ++ R+W +++       + SY+  +    ++  V    + + E +S       
Sbjct: 262 AGTSNLGEVNRVWNSLKSNFHTTTNVSYLTMLHTLAKLKDVEGLLKCFKEWESSCHSYDM 321

Query: 305 EQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALEL 364
              N  I    ++   ++A+ L+ + ++   +      R + +  F  N        L+L
Sbjct: 322 RLANVAIRACLEHDMYEEAA-LIFDDALKRTEGLFFNAREMFMVFFLKN------HQLDL 374

Query: 365 GMKLITTK----KVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYN 420
            +K +       K     P  +T  +    F ++ DV  AE L + LK  N    +  Y+
Sbjct: 375 ALKHMKAAFSEVKEIEWQPEPKTVSAFFAYFEDEKDVNGAERLCKILKHINRLD-SNAYD 433

Query: 421 TLIKAYVKAKINDPNLLRRMILGGARPDAETYSLLK 456
            L+K Y+ A    P + +R+   G   + E  +LL+
Sbjct: 434 LLLKTYIAAGKLAPEMRQRLEEDGIEINPELENLLE 469


>gi|449453087|ref|XP_004144290.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Cucumis sativus]
 gi|449522905|ref|XP_004168466.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Cucumis sativus]
          Length = 915

 Score = 83.2 bits (204), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 91/435 (20%), Positives = 174/435 (40%), Gaps = 55/435 (12%)

Query: 65  YSYLLEFTIKNHGISQGEKLFCCIPKD--YQNELLYNNLVIACLDKGVIKLSLEYMKKMR 122
           Y+ L+    +N  +     +F  +P     +NE+ Y NL+    +   +  +L+   +M 
Sbjct: 242 YTSLILGYCRNKNVDAANAIFLSMPNKGCLRNEVSYTNLIHGFCEARRVDEALKLFSQMH 301

Query: 123 VLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIE 182
                 +   +  +I      GR+    N+ ++M      P+V T+ +L+     D N +
Sbjct: 302 EDNCWPTVRTYTVIIFALCQLGRKTEALNMFKEMTEKHCQPNVHTYTVLICSLCEDSNFD 361

Query: 183 GLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLI 242
              K+ + M    + P+ V+Y  L   +    L   A   +  +E +    N  T + LI
Sbjct: 362 DAKKILNGMLEKGLIPSVVTYNALIDGYCKKGLSASALEILSLMESNNCSPNARTYNELI 421

Query: 243 ILYGYLAKGKDLERIWATVQEL------PNVRSK-------------------------- 270
           + +    +GK++ +  + + ++      PNV +                           
Sbjct: 422 LGF---CRGKNIHKAMSLLHKMLERKLQPNVVTYNILIHGQCKEGDLGSAYKLLSLMNES 478

Query: 271 -------SYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQ-YNSVISVYCKNGFIDK 322
                  +Y + I+   +   V  A  L+  ++  K +KA E  Y+++I  YCK G +  
Sbjct: 479 GLVPDEWTYSVFIDTLCKRGLVEEARSLFESLKE-KGIKANEVIYSTLIDGYCKVGKVSD 537

Query: 323 ASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLE 382
              LL +M   GC PN+ITY  L  G  K    E+ FK   L + ++  + +    P  +
Sbjct: 538 GRFLLDKMLSAGCVPNSITYNSLIDGYCK----EKNFKEARLLVDIMIKRDIE---PAAD 590

Query: 383 TTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVK-AKINDPN-LLRRM 440
           T   +I+   +  +   A ++F+++         F+Y   I AY    ++ D   L+ +M
Sbjct: 591 TYTILIDNLLKDDEFDQAHDMFDQMLSTGSHPDVFIYTAFIHAYCSHGRLKDAEVLICKM 650

Query: 441 ILGGARPDAETYSLL 455
              G  PD   Y+L 
Sbjct: 651 NAKGIMPDTMLYTLF 665



 Score = 49.3 bits (116), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 45/193 (23%), Positives = 83/193 (43%), Gaps = 11/193 (5%)

Query: 265 PNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKAS 324
           PN+ + + +  +  + ++  V  AE    ++        T  Y S+I  YC+N  +D A+
Sbjct: 202 PNIFTLNTM--VNGYCKLGNVVEAELYVSKIVQAGLSLDTFTYTSLILGYCRNKNVDAAN 259

Query: 325 GLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETT 384
            +   M   GC  N ++Y +L  G  ++  V+E        +KL +     +  P + T 
Sbjct: 260 AIFLSMPNKGCLRNEVSYTNLIHGFCEARRVDE-------ALKLFSQMHEDNCWPTVRTY 312

Query: 385 LSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVK-AKINDP-NLLRRMIL 442
             II    + G    A N+F+E+ + +       Y  LI +  + +  +D   +L  M+ 
Sbjct: 313 TVIIFALCQLGRKTEALNMFKEMTEKHCQPNVHTYTVLICSLCEDSNFDDAKKILNGMLE 372

Query: 443 GGARPDAETYSLL 455
            G  P   TY+ L
Sbjct: 373 KGLIPSVVTYNAL 385



 Score = 42.7 bits (99), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 38/152 (25%), Positives = 62/152 (40%), Gaps = 7/152 (4%)

Query: 198 PNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERI 257
           PN ++Y  L   +   + +  A   V+ + K    +     D   IL   L K  + ++ 
Sbjct: 552 PNSITYNSLIDGYCKEKNFKEARLLVDIMIKR---DIEPAADTYTILIDNLLKDDEFDQA 608

Query: 258 WATVQELPNVRSKS----YVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISV 313
                ++ +  S      Y   I A+    ++  AE L  +M +   +  T  Y   I  
Sbjct: 609 HDMFDQMLSTGSHPDVFIYTAFIHAYCSHGRLKDAEVLICKMNAKGIMPDTMLYTLFIDA 668

Query: 314 YCKNGFIDKASGLLKEMSMNGCKPNAITYRHL 345
           Y + G ID A G+LK M   GC+P+  TY  L
Sbjct: 669 YGRFGSIDGAFGILKRMHEVGCEPSYYTYSCL 700


>gi|125572252|gb|EAZ13767.1| hypothetical protein OsJ_03693 [Oryza sativa Japonica Group]
          Length = 715

 Score = 83.2 bits (204), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 94/413 (22%), Positives = 174/413 (42%), Gaps = 35/413 (8%)

Query: 58  YRPKELDYSYLLEFTIKNHGISQGEKLFC------CIPKDYQNELLYNNLVIACLDKGVI 111
           ++P  + Y+ +L+           E+LF       C+P    NE+ ++ LV      G++
Sbjct: 277 FQPDTVSYTTVLKGLCAAKRWEDVEELFAEMMEKNCMP----NEVTFDMLVRFFCRGGMV 332

Query: 112 KLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHIL 171
           + +++ +++M   G + +  + N +I      GR       L  M +   +P   ++  +
Sbjct: 333 ERAIQVLEQMSGHGCAANTTLCNIVINTICKQGRVDDAFQFLNNMGSYGCSPDTISYTTV 392

Query: 172 MKIEANDHNIEGLMKVYSDMKRSEVEPNEVSY----CILATAHAVARLYTVAETYVEALE 227
           +K        E   ++  +M R    PNEV++    CIL     + +    A   +E + 
Sbjct: 393 LKGLCRAERWEDAKELLKEMVRKNCPPNEVTFNTFICILCQKGLIEQ----ATMLIEQMS 448

Query: 228 KSMTGNNWSTLDVLIILYGYLAKGK---DLERIWATVQELPNVRSKSYVLAIEAFGRIAQ 284
           +     N  T + L+   G+  +G+    LE  ++   + PN  + +Y   +       +
Sbjct: 449 EHGCEVNIVTYNALV--NGFCVQGRVDSALELFYSMPCK-PN--TITYTTLLTGLCNAER 503

Query: 285 VSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRH 344
           +  A EL  EM           +N ++S +C+ G +D+A  L+++M  +GC PN ITY  
Sbjct: 504 LDAAAELLAEMLQKDCAPNVVTFNVLVSFFCQKGLMDEAIELVEQMMEHGCTPNLITYNT 563

Query: 345 LALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLF 404
           L  G  K    EE   ALEL   L++       +P + T  SII + + +  V  A  +F
Sbjct: 564 LLDGITKDCNSEE---ALELLHGLVSN----GVSPDIVTYSSIIGVLSREDRVEEAIKMF 616

Query: 405 EELKKANYTKYTFVYNTLIKAYVKAKINDP--NLLRRMILGGARPDAETYSLL 455
             ++         +YN ++ A  K    D   +    M+  G  P+  TY  L
Sbjct: 617 HIVQDLGMRPKAVIYNKILLALCKRCNTDGAIDFFAYMVSNGCMPNELTYITL 669



 Score = 73.2 bits (178), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 85/424 (20%), Positives = 164/424 (38%), Gaps = 73/424 (17%)

Query: 98  YNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLI-ILNSSPGRRKTIPNILRQM 156
           Y  ++    D+G +  +L  +  M   G   S + +  L+  +  S G  + +  +L +M
Sbjct: 179 YTPIIRGLCDRGRVGEALSLLDDMLHRGCQPSVVTYTVLLEAVCKSTGFGQAM-EVLDEM 237

Query: 157 KADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSY-CILATAHAVARL 215
           +A    P++ T+++++     +  ++   +  + +     +P+ VSY  +L    A  R 
Sbjct: 238 RAKGCTPNIVTYNVIINGMCREGRVDDAREFLNRLSSYGFQPDTVSYTTVLKGLCAAKRW 297

Query: 216 YTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELP---------- 265
             V E + E +EK+   N   T D+L+    +  +G  +ER    ++++           
Sbjct: 298 EDVEELFAEMMEKNCMPNEV-TFDMLV---RFFCRGGMVERAIQVLEQMSGHGCAANTTL 353

Query: 266 -----NVRSK------------------------SYVLAIEAFGRIAQVSRAEELWLEMQ 296
                N   K                        SY   ++   R  +   A+EL  EM 
Sbjct: 354 CNIVINTICKQGRVDDAFQFLNNMGSYGCSPDTISYTTVLKGLCRAERWEDAKELLKEMV 413

Query: 297 SVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVE 356
                     +N+ I + C+ G I++A+ L+++MS +GC+ N +TY  L  G      V+
Sbjct: 414 RKNCPPNEVTFNTFICILCQKGLIEQATMLIEQMSEHGCEVNIVTYNALVNGFCVQGRVD 473

Query: 357 EGF-------------------------KALELGMKLITTKKVRSSTPWLETTLSIIEIF 391
                                       + L+   +L+     +   P + T   ++  F
Sbjct: 474 SALELFYSMPCKPNTITYTTLLTGLCNAERLDAAAELLAEMLQKDCAPNVVTFNVLVSFF 533

Query: 392 AEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKINDP--NLLRRMILGGARPDA 449
            +KG +  A  L E++ +   T     YNTL+    K   ++    LL  ++  G  PD 
Sbjct: 534 CQKGLMDEAIELVEQMMEHGCTPNLITYNTLLDGITKDCNSEEALELLHGLVSNGVSPDI 593

Query: 450 ETYS 453
            TYS
Sbjct: 594 VTYS 597



 Score = 62.8 bits (151), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 76/371 (20%), Positives = 145/371 (39%), Gaps = 55/371 (14%)

Query: 125 GHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGL 184
           G ++    +N L+      G+      ++  M    VAP   T+  +++   +   +   
Sbjct: 139 GTAVDVFAYNTLVAGYCRYGQLDAARRLIASMP---VAPDAYTYTPIIRGLCDRGRVGEA 195

Query: 185 MKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLI-- 242
           + +  DM     +P+ V+Y +L  A   +  +  A   ++ +       N  T +V+I  
Sbjct: 196 LSLLDDMLHRGCQPSVVTYTVLLEAVCKSTGFGQAMEVLDEMRAKGCTPNIVTYNVIING 255

Query: 243 --------------------------ILYGYLAKG-------KDLERIWATVQE---LPN 266
                                     + Y  + KG       +D+E ++A + E   +PN
Sbjct: 256 MCREGRVDDAREFLNRLSSYGFQPDTVSYTTVLKGLCAAKRWEDVEELFAEMMEKNCMPN 315

Query: 267 VRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGL 326
               ++ + +  F R   V RA ++  +M        T   N VI+  CK G +D A   
Sbjct: 316 --EVTFDMLVRFFCRGGMVERAIQVLEQMSGHGCAANTTLCNIVINTICKQGRVDDAFQF 373

Query: 327 LKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTL- 385
           L  M   GC P+ I+Y  +  G  ++   E+  + L+        + VR + P  E T  
Sbjct: 374 LNNMGSYGCSPDTISYTTVLKGLCRAERWEDAKELLK--------EMVRKNCPPNEVTFN 425

Query: 386 SIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAY-VKAKINDPNLLRRMILGG 444
           + I I  +KG +  A  L E++ +         YN L+  + V+ +++  + L       
Sbjct: 426 TFICILCQKGLIEQATMLIEQMSEHGCEVNIVTYNALVNGFCVQGRVD--SALELFYSMP 483

Query: 445 ARPDAETYSLL 455
            +P+  TY+ L
Sbjct: 484 CKPNTITYTTL 494



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 58/278 (20%), Positives = 115/278 (41%), Gaps = 30/278 (10%)

Query: 94  NELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNIL 153
           NE+ +N  +     KG+I+ +   +++M   G  ++ + +N L+      GR  +   + 
Sbjct: 420 NEVTFNTFICILCQKGLIEQATMLIEQMSEHGCEVNIVTYNALVNGFCVQGRVDSALELF 479

Query: 154 RQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVA 213
             M      P+  T+  L+    N   ++   ++ ++M + +  PN V++ +L +     
Sbjct: 480 YSMPCK---PNTITYTTLLTGLCNAERLDAAAELLAEMLQKDCAPNVVTFNVLVSFFCQK 536

Query: 214 RLYTVAETYVEAL-EKSMTGN--NWSTL-----------DVLIILYGYLAKGKDLERIWA 259
            L   A   VE + E   T N   ++TL           + L +L+G ++ G        
Sbjct: 537 GLMDEAIELVEQMMEHGCTPNLITYNTLLDGITKDCNSEEALELLHGLVSNGVS------ 590

Query: 260 TVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGF 319
                P++ + S ++ +    R  +V  A +++  +Q +        YN ++   CK   
Sbjct: 591 -----PDIVTYSSIIGV--LSREDRVEEAIKMFHIVQDLGMRPKAVIYNKILLALCKRCN 643

Query: 320 IDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEE 357
            D A      M  NGC PN +TY  L  G    + ++E
Sbjct: 644 TDGAIDFFAYMVSNGCMPNELTYITLIEGLANEDFLKE 681


>gi|242054609|ref|XP_002456450.1| hypothetical protein SORBIDRAFT_03g036550 [Sorghum bicolor]
 gi|241928425|gb|EES01570.1| hypothetical protein SORBIDRAFT_03g036550 [Sorghum bicolor]
          Length = 669

 Score = 83.2 bits (204), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 90/413 (21%), Positives = 181/413 (43%), Gaps = 35/413 (8%)

Query: 58  YRPKELDYSYLLEFTIKNHGISQGEKLFC------CIPKDYQNELLYNNLVIACLDKGVI 111
           ++P  + Y+ LL+    +      E+LF       C+P    NE+ ++ L+      G++
Sbjct: 244 FQPDTVSYTTLLKGLCASKRWDDVEELFAEMMEKNCMP----NEVTFDMLIRFFCRGGMV 299

Query: 112 KLSLEYMKKMRVLGHSISYLVFNRLIILNS--SPGRRKTIPNILRQMKADKVAPHVSTFH 169
           + +++ +++M   G + +  + N  I++NS    GR      +L  M +    P   ++ 
Sbjct: 300 ERAIQVLEQMTEHGCATNTTLCN--IVINSICKQGRVDDAFKLLNDMGSYGCNPDTISYT 357

Query: 170 ILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSY----CILATAHAVARLYTVAETYVEA 225
            ++K        +   ++ ++M R+   PNEV++    CIL     + +   + E     
Sbjct: 358 TVLKGLCRAERWDDAKELLNEMVRNNCPPNEVTFNTFICILCQKGLIEQAIMLIE----- 412

Query: 226 LEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELP-NVRSKSYVLAIEAFGRIAQ 284
            + S  G     +    ++ G+  +G  ++      + +P    + +Y   +       +
Sbjct: 413 -QMSEHGCTVGVVTYNALVNGFCVQGH-IDSALELFRSMPCKPNTITYTTLLTGLCNAER 470

Query: 285 VSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRH 344
           +  A EL  EM           +N ++S +C+ GF+++A  L+++M  +GC PN ITY  
Sbjct: 471 LDGAAELVAEMLRGDCPPNVVTFNVLVSFFCQKGFLEEAIELVEQMMEHGCTPNLITYNT 530

Query: 345 LALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLF 404
           L  G  K    E+   ALEL   L++    +  +P + T  SII I +++  +  A  LF
Sbjct: 531 LLDGITKDCSSED---ALELLHGLVS----KGVSPDVITFSSIIGILSKEDRIEEAVQLF 583

Query: 405 EELKKANYTKYTFVYNTLIKAYVK-AKINDP-NLLRRMILGGARPDAETYSLL 455
             ++         VYN ++    K  +I++  +    M+  G  P+  TY +L
Sbjct: 584 HVVQDIGMRPKAVVYNKILLGLCKRCEIDNAIDFFAYMVSNGCMPNESTYIIL 636



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 81/343 (23%), Positives = 136/343 (39%), Gaps = 54/343 (15%)

Query: 154 RQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVA 213
           R + +  VAP   T+  L+++  +   +   + +  DM R   +PN V+Y +L  A    
Sbjct: 132 RLIGSMPVAPDAYTYTPLIRVLCDRGRVADALSLLDDMLRRGCQPNVVTYTVLLEAMCRN 191

Query: 214 RLYTVAETYVEALEKSMTGNNWSTLDVLI----------------------------ILY 245
             +  A   ++ +       N  T +V+I                            + Y
Sbjct: 192 SGFEQAMAVLDEMRAKGCTPNIVTYNVIINGMCREGRVDDARELLNRLPSYGFQPDTVSY 251

Query: 246 GYLAKGKDLERIWATVQEL----------PNVRSKSYVLAIEAFGRIAQVSRAEELWLEM 295
             L KG    + W  V+EL          PN    ++ + I  F R   V RA ++  +M
Sbjct: 252 TTLLKGLCASKRWDDVEELFAEMMEKNCMPN--EVTFDMLIRFFCRGGMVERAIQVLEQM 309

Query: 296 QSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLV 355
                   T   N VI+  CK G +D A  LL +M   GC P+ I+Y  +  G  ++   
Sbjct: 310 TEHGCATNTTLCNIVINSICKQGRVDDAFKLLNDMGSYGCNPDTISYTTVLKGLCRAERW 369

Query: 356 EEGFKALELGMKLITTKKVRSSTPWLETTL-SIIEIFAEKGDVGNAENLFEELKKANYTK 414
           ++         K +  + VR++ P  E T  + I I  +KG +  A  L E++ +   T 
Sbjct: 370 DDA--------KELLNEMVRNNCPPNEVTFNTFICILCQKGLIEQAIMLIEQMSEHGCTV 421

Query: 415 YTFVYNTLIKAY-VKAKINDP-NLLRRMILGGARPDAETYSLL 455
               YN L+  + V+  I+    L R M     +P+  TY+ L
Sbjct: 422 GVVTYNALVNGFCVQGHIDSALELFRSM---PCKPNTITYTTL 461



 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 90/444 (20%), Positives = 178/444 (40%), Gaps = 76/444 (17%)

Query: 45  ALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQGEKLFCCIPKDYQNELLYNNLVIA 104
           AL +++ ++R R  +P  + Y+ LLE   +N G  Q                        
Sbjct: 162 ALSLLDDMLR-RGCQPNVVTYTVLLEAMCRNSGFEQ------------------------ 196

Query: 105 CLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPH 164
                    ++  + +MR  G + + + +N +I      GR      +L ++ +    P 
Sbjct: 197 ---------AMAVLDEMRAKGCTPNIVTYNVIINGMCREGRVDDARELLNRLPSYGFQPD 247

Query: 165 VSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYT---VAET 221
             ++  L+K        + + +++++M      PNEV++ +L       R +    + E 
Sbjct: 248 TVSYTTLLKGLCASKRWDDVEELFAEMMEKNCMPNEVTFDML------IRFFCRGGMVER 301

Query: 222 YVEALEKSMTGNNWSTLDVLI-ILYGYLAKGKDLERIWATVQEL----PNVRSKSYVLAI 276
            ++ LE+ MT +  +T   L  I+   + K   ++  +  + ++     N  + SY   +
Sbjct: 302 AIQVLEQ-MTEHGCATNTTLCNIVINSICKQGRVDDAFKLLNDMGSYGCNPDTISYTTVL 360

Query: 277 EAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCK 336
           +   R  +   A+EL  EM           +N+ I + C+ G I++A  L+++MS +GC 
Sbjct: 361 KGLCRAERWDDAKELLNEMVRNNCPPNEVTFNTFICILCQKGLIEQAIMLIEQMSEHGCT 420

Query: 337 PNAITYRHLALG-CFKSNLVE--EGFKALELGMKLIT---------------------TK 372
              +TY  L  G C + ++    E F+++      IT                      +
Sbjct: 421 VGVVTYNALVNGFCVQGHIDSALELFRSMPCKPNTITYTTLLTGLCNAERLDGAAELVAE 480

Query: 373 KVRSSTPWLETTLSI-IEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKI 431
            +R   P    T ++ +  F +KG +  A  L E++ +   T     YNTL+    K   
Sbjct: 481 MLRGDCPPNVVTFNVLVSFFCQKGFLEEAIELVEQMMEHGCTPNLITYNTLLDGITKDCS 540

Query: 432 NDP--NLLRRMILGGARPDAETYS 453
           ++    LL  ++  G  PD  T+S
Sbjct: 541 SEDALELLHGLVSKGVSPDVITFS 564



 Score = 68.2 bits (165), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 63/279 (22%), Positives = 116/279 (41%), Gaps = 30/279 (10%)

Query: 94  NELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNIL 153
           NE+ +N  +     KG+I+ ++  +++M   G ++  + +N L+      G   +   + 
Sbjct: 387 NEVTFNTFICILCQKGLIEQAIMLIEQMSEHGCTVGVVTYNALVNGFCVQGHIDSALELF 446

Query: 154 RQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVA 213
           R M      P+  T+  L+    N   ++G  ++ ++M R +  PN V++ +L +     
Sbjct: 447 RSMPC---KPNTITYTTLLTGLCNAERLDGAAELVAEMLRGDCPPNVVTFNVLVSFFCQK 503

Query: 214 RLYTVAETYVEAL-EKSMTGN-------------NWSTLDVLIILYGYLAKGKDLERIWA 259
                A   VE + E   T N             + S+ D L +L+G ++KG        
Sbjct: 504 GFLEEAIELVEQMMEHGCTPNLITYNTLLDGITKDCSSEDALELLHGLVSKGVS------ 557

Query: 260 TVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGF 319
                P+V + S ++ I    +  ++  A +L+  +Q +        YN ++   CK   
Sbjct: 558 -----PDVITFSSIIGI--LSKEDRIEEAVQLFHVVQDIGMRPKAVVYNKILLGLCKRCE 610

Query: 320 IDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEG 358
           ID A      M  NGC PN  TY  L  G     L++E 
Sbjct: 611 IDNAIDFFAYMVSNGCMPNESTYIILIEGLAHEGLLKEA 649


>gi|21740710|emb|CAD40831.1| OSJNBa0086B14.3 [Oryza sativa Japonica Group]
 gi|116310079|emb|CAH67100.1| H0818E04.17 [Oryza sativa Indica Group]
          Length = 430

 Score = 83.2 bits (204), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 76/331 (22%), Positives = 139/331 (41%), Gaps = 11/331 (3%)

Query: 12  SAFQSWMREGFPVHRGEIFHSINRLRKLQLNKRALEVMEWVIRERPYRPKELDYSYLLEF 71
           +A + W  EG      E+      L +    K ALEV EW+         E DY   ++ 
Sbjct: 94  AALERWAGEGRAASAAELRGIARDLSRAGRYKHALEVAEWMKTHHESDLSENDYGMRIDL 153

Query: 72  TIKNHGISQGEKLFCCIPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYL 131
             +  G +  E  F  +P   Q+   Y  L+ +     +   +    K+M+    S++ L
Sbjct: 154 ITRVFGANAAEDFFEKLPACVQSLEAYTALLHSYARSKMTDKAERLFKRMKDANLSMNIL 213

Query: 132 VFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDM 191
           V+N ++ L  S G    +P I  ++K  K +P + T+++ +   A   ++EG   +  +M
Sbjct: 214 VYNEMMTLYISVGELDKVPVIAEELKRQKFSPDLFTYNLRISASAASMDLEGFKGILDEM 273

Query: 192 KRSEVEPNEVS----YCILATAHAVA-RLYTVAETYVEALEKSMTGNNWSTLDVLIILYG 246
            +   +PN       Y  LA  +  A +L     + VEA E  ++   W T D L+IL+ 
Sbjct: 274 SK---DPNSNEGWKLYQNLAVIYVDAGQLVGSGNSLVEA-EAKISRREWITYDFLVILHT 329

Query: 247 YLAKGKDLERIWAT-VQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLK-AT 304
            L     ++ IW + +     + S++Y+  + ++    Q+  A E+  + Q  K  +   
Sbjct: 330 GLGNRDRIKDIWKSMLMTSQRMTSRNYICVLSSYLMCGQLKDAGEVIDQWQRSKAPEFDI 389

Query: 305 EQYNSVISVYCKNGFIDKASGLLKEMSMNGC 335
              N +   +   GF D A+   + M    C
Sbjct: 390 SACNRLFDAFLNAGFTDTANSFRELMLQKSC 420



 Score = 42.7 bits (99), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 48/207 (23%), Positives = 95/207 (45%), Gaps = 18/207 (8%)

Query: 218 VAETYVEALEKSMTGNNWST-LDVLIILYGYLAKGKDLERIWATVQELPNVRSKSYVLAI 276
           VAE      E  ++ N++   +D++  ++G  A     E++ A VQ L     ++Y   +
Sbjct: 130 VAEWMKTHHESDLSENDYGMRIDLITRVFGANAAEDFFEKLPACVQSL-----EAYTALL 184

Query: 277 EAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCK 336
            ++ R     +AE L+  M+          YN ++++Y   G +DK   + +E+      
Sbjct: 185 HSYARSKMTDKAERLFKRMKDANLSMNILVYNEMMTLYISVGELDKVPVIAEELKRQKFS 244

Query: 337 PNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPW-LETTLSIIEIFAEKG 395
           P+  TY +L +    +++  EGFK +   M    +K   S+  W L   L++  I+ + G
Sbjct: 245 PDLFTY-NLRISASAASMDLEGFKGILDEM----SKDPNSNEGWKLYQNLAV--IYVDAG 297

Query: 396 D-VGNAENLFE---ELKKANYTKYTFV 418
             VG+  +L E   ++ +  +  Y F+
Sbjct: 298 QLVGSGNSLVEAEAKISRREWITYDFL 324


>gi|359475765|ref|XP_002273555.2| PREDICTED: pentatricopeptide repeat-containing protein At5g61990,
           mitochondrial-like [Vitis vinifera]
          Length = 935

 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 91/434 (20%), Positives = 187/434 (43%), Gaps = 42/434 (9%)

Query: 29  IFHSINRLRKLQLNKRALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQGEKLFCCI 88
           + H + +  K++   +A E+++ +I     +P    +  L+E   + H + +  +L    
Sbjct: 285 LIHGLCKFGKME---KAAEILKGMIT-LGCKPNSRTFCLLIEGYCREHNMGRALELL--- 337

Query: 89  PKDYQNELLYNNLVIACLDKGV----------IKLSLEYMKKMRVLGHSISYLVFNRLII 138
                +E+   NLV + +  G           + L+ + ++KM   G   + +V++ LI+
Sbjct: 338 -----DEMEKRNLVPSAVSYGAMINGLCHCKDLSLANKLLEKMTFSGLKPNVVVYSTLIM 392

Query: 139 LNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEP 198
             +S GR +    +L  M    VAP +  ++ ++   +    +E       +++   ++P
Sbjct: 393 GYASEGRIEEARRLLDGMSCSGVAPDIFCYNAIISCLSKAGKMEEASTYLLEIQGRGLKP 452

Query: 199 NEVSYCILATAHA-VARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLE-- 255
           + V++      ++   ++   A+ + E L+  +  NN       +++ G+   G  +E  
Sbjct: 453 DAVTFGAFILGYSKTGKMTEAAKYFDEMLDHGLMPNNPL---YTVLINGHFKAGNLMEAL 509

Query: 256 ---RIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVIS 312
              R    +  LP+V++ S    I    +  +V  A +++ E++    +     Y+S+IS
Sbjct: 510 SIFRHLHALGVLPDVQTCSAF--IHGLLKNGRVQEALKVFSELKEKGLVPDVFTYSSLIS 567

Query: 313 VYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTK 372
            +CK G ++KA  L  EM + G  PN   Y  L  G  KS  ++          KL    
Sbjct: 568 GFCKQGEVEKAFELHDEMCLKGIAPNIFIYNALVDGLCKSGDIQR-------ARKLFDGM 620

Query: 373 KVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKIN 432
             +   P   T  ++I+ + +  +V  A +LF E+       ++FVYN L+    K    
Sbjct: 621 PEKGLEPDSVTYSTMIDGYCKSENVAEAFSLFHEMPSKGVQPHSFVYNALVHGCCKEGDM 680

Query: 433 DP--NLLRRMILGG 444
           +   NL R M+  G
Sbjct: 681 EKAMNLFREMLQKG 694



 Score = 68.6 bits (166), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 74/312 (23%), Positives = 134/312 (42%), Gaps = 19/312 (6%)

Query: 151 NILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAH 210
           +I R + A  V P V T    +     +  ++  +KV+S++K   + P+  +Y  L +  
Sbjct: 510 SIFRHLHALGVLPDVQTCSAFIHGLLKNGRVQEALKVFSELKEKGLVPDVFTYSSLISGF 569

Query: 211 A-VARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPN--- 266
                +    E + E   K +  N +    +   L   L K  D++R       +P    
Sbjct: 570 CKQGEVEKAFELHDEMCLKGIAPNIF----IYNALVDGLCKSGDIQRARKLFDGMPEKGL 625

Query: 267 -VRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASG 325
              S +Y   I+ + +   V+ A  L+ EM S      +  YN+++   CK G ++KA  
Sbjct: 626 EPDSVTYSTMIDGYCKSENVAEAFSLFHEMPSKGVQPHSFVYNALVHGCCKEGDMEKAMN 685

Query: 326 LLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTL 385
           L +EM   G     +++  L  G  KS  ++E   A +L  ++I     +   P   T  
Sbjct: 686 LFREMLQKGF-ATTLSFNTLIDGYCKSCKIQE---ASQLFQEMI----AKQIMPDHVTYT 737

Query: 386 SIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKINDP--NLLRRMILG 443
           ++I+   + G +  A  LF+E+++ N    T  Y +L+  Y K   +     L  +M+  
Sbjct: 738 TVIDWHCKAGKMEEANLLFKEMQERNLIVDTVTYTSLMYGYNKLGQSSEVFALFEKMVAK 797

Query: 444 GARPDAETYSLL 455
           G +PD  TY L+
Sbjct: 798 GVKPDEVTYGLV 809



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 89/390 (22%), Positives = 156/390 (40%), Gaps = 39/390 (10%)

Query: 101 LVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADK 160
           L+   + +G I   L     M   G  I+ + +N LI      G+ +    IL+ M    
Sbjct: 250 LIDGFMREGDIDEVLRIKDVMVSCGIPINLITYNVLIHGLCKFGKMEKAAEILKGMITLG 309

Query: 161 VAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAE 220
             P+  TF +L++    +HN+   +++  +M++  + P+ VSY  +       +  ++A 
Sbjct: 310 CKPNSRTFCLLIEGYCREHNMGRALELLDEMEKRNLVPSAVSYGAMINGLCHCKDLSLAN 369

Query: 221 TYVEALEKSMTGNNWSTLDVLIILY---GYLAKGKDLERIWATVQELPNVRSKSYVLAIE 277
             +E +  S    N      LI+ Y   G + + + L    +     P++    Y   I 
Sbjct: 370 KLLEKMTFSGLKPNVVVYSTLIMGYASEGRIEEARRLLDGMSCSGVAPDIF--CYNAIIS 427

Query: 278 AFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKP 337
              +  ++  A    LE+Q          + + I  Y K G + +A+    EM  +G  P
Sbjct: 428 CLSKAGKMEEASTYLLEIQGRGLKPDAVTFGAFILGYSKTGKMTEAAKYFDEMLDHGLMP 487

Query: 338 NAITYRHLALGCFKS-NLVE--EGFKALE-LG------------------------MKLI 369
           N   Y  L  G FK+ NL+E    F+ L  LG                        +K+ 
Sbjct: 488 NNPLYTVLINGHFKAGNLMEALSIFRHLHALGVLPDVQTCSAFIHGLLKNGRVQEALKVF 547

Query: 370 TTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKA 429
           +  K +   P + T  S+I  F ++G+V  A  L +E+         F+YN L+    K+
Sbjct: 548 SELKEKGLVPDVFTYSSLISGFCKQGEVEKAFELHDEMCLKGIAPNIFIYNALVDGLCKS 607

Query: 430 KINDPNLLRRMILG----GARPDAETYSLL 455
              D    R++  G    G  PD+ TYS +
Sbjct: 608 --GDIQRARKLFDGMPEKGLEPDSVTYSTM 635



 Score = 52.8 bits (125), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 53/261 (20%), Positives = 111/261 (42%), Gaps = 6/261 (2%)

Query: 106 LDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHV 165
           L  G ++ +L+   +++  G       ++ LI      G  +    +  +M    +AP++
Sbjct: 535 LKNGRVQEALKVFSELKEKGLVPDVFTYSSLISGFCKQGEVEKAFELHDEMCLKGIAPNI 594

Query: 166 STFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEA 225
             ++ L+       +I+   K++  M    +EP+ V+Y  +   +  +    VAE +   
Sbjct: 595 FIYNALVDGLCKSGDIQRARKLFDGMPEKGLEPDSVTYSTMIDGYCKSE--NVAEAFSLF 652

Query: 226 LEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPN---VRSKSYVLAIEAFGRI 282
            E    G    +     +++G   +G D+E+     +E+       + S+   I+ + + 
Sbjct: 653 HEMPSKGVQPHSFVYNALVHGCCKEG-DMEKAMNLFREMLQKGFATTLSFNTLIDGYCKS 711

Query: 283 AQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITY 342
            ++  A +L+ EM + + +     Y +VI  +CK G +++A+ L KEM       + +TY
Sbjct: 712 CKIQEASQLFQEMIAKQIMPDHVTYTTVIDWHCKAGKMEEANLLFKEMQERNLIVDTVTY 771

Query: 343 RHLALGCFKSNLVEEGFKALE 363
             L  G  K     E F   E
Sbjct: 772 TSLMYGYNKLGQSSEVFALFE 792



 Score = 48.9 bits (115), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 66/343 (19%), Positives = 138/343 (40%), Gaps = 29/343 (8%)

Query: 98  YNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMK 157
           Y++L+     +G ++ + E   +M + G + +  ++N L+      G  +    +   M 
Sbjct: 562 YSSLISGFCKQGEVEKAFELHDEMCLKGIAPNIFIYNALVDGLCKSGDIQRARKLFDGMP 621

Query: 158 ADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVAR--- 214
              + P   T+  ++       N+     ++ +M    V+P+   Y   A  H   +   
Sbjct: 622 EKGLEPDSVTYSTMIDGYCKSENVAEAFSLFHEMPSKGVQPHSFVYN--ALVHGCCKEGD 679

Query: 215 LYTVAETYVEALEKSMTGNNWSTLDVLIILYGY-----LAKGKDLERIWATVQELPNVRS 269
           +      + E L+K       +TL    ++ GY     + +   L +     Q +P+   
Sbjct: 680 MEKAMNLFREMLQKGFA----TTLSFNTLIDGYCKSCKIQEASQLFQEMIAKQIMPD--H 733

Query: 270 KSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKE 329
            +Y   I+   +  ++  A  L+ EMQ    +  T  Y S++  Y K G   +   L ++
Sbjct: 734 VTYTTVIDWHCKAGKMEEANLLFKEMQERNLIVDTVTYTSLMYGYNKLGQSSEVFALFEK 793

Query: 330 MSMNGCKPNAITYRHLALG-CFKSNLVEEGFKALE--LGMKLITTKKVRSSTPWLETTLS 386
           M   G KP+ +TY  +    C + NLV E FK  +  +G  ++T   +            
Sbjct: 794 MVAKGVKPDEVTYGLVIYAHCKEDNLV-EAFKLRDEVVGKGMLTKGTIHD---------L 843

Query: 387 IIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKA 429
           +I    ++ D+  A  L +E+ +          +TL++++ +A
Sbjct: 844 LITALCKREDLTEASKLLDEMGELGLKPSLAACSTLVRSFHEA 886



 Score = 44.3 bits (103), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 49/194 (25%), Positives = 82/194 (42%), Gaps = 11/194 (5%)

Query: 264 LPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKA 323
           +PN  + +Y +      R  +++ A+  + EMQ           +++I  + + G ID+ 
Sbjct: 206 VPN--TYTYTIITAGLCRAKRMNEAKLTFEEMQKTGLKPDYNACSALIDGFMREGDIDEV 263

Query: 324 SGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLET 383
             +   M   G   N ITY  L  G  K   +E   KA E+   +IT        P   T
Sbjct: 264 LRIKDVMVSCGIPINLITYNVLIHGLCKFGKME---KAAEILKGMITL----GCKPNSRT 316

Query: 384 TLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAK-INDPN-LLRRMI 441
              +IE +  + ++G A  L +E++K N       Y  +I      K ++  N LL +M 
Sbjct: 317 FCLLIEGYCREHNMGRALELLDEMEKRNLVPSAVSYGAMINGLCHCKDLSLANKLLEKMT 376

Query: 442 LGGARPDAETYSLL 455
             G +P+   YS L
Sbjct: 377 FSGLKPNVVVYSTL 390



 Score = 43.5 bits (101), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 72/355 (20%), Positives = 145/355 (40%), Gaps = 19/355 (5%)

Query: 60  PKELDYSYLLEFTIKNHGISQGEKLFCCIPKD--YQNELLYNNLVIACLDKGVIKLSLEY 117
           P    Y+ L++   K+  I +  KLF  +P+     + + Y+ ++        +  +   
Sbjct: 592 PNIFIYNALVDGLCKSGDIQRARKLFDGMPEKGLEPDSVTYSTMIDGYCKSENVAEAFSL 651

Query: 118 MKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEAN 177
             +M   G      V+N L+      G  +   N+ R+M     A  +S F+ L+     
Sbjct: 652 FHEMPSKGVQPHSFVYNALVHGCCKEGDMEKAMNLFREMLQKGFATTLS-FNTLIDGYCK 710

Query: 178 DHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVA-RLYTVAETYVEALEKSMTGNNWS 236
              I+   +++ +M   ++ P+ V+Y  +   H  A ++      + E  E+++      
Sbjct: 711 SCKIQEASQLFQEMIAKQIMPDHVTYTTVIDWHCKAGKMEEANLLFKEMQERNLI---VD 767

Query: 237 TLDVLIILYGYLAKGKDLERIWATVQELPNVRSK----SYVLAIEAFGRIAQVSRAEELW 292
           T+    ++YGY   G+  E ++A  +++     K    +Y L I A  +   +  A +L 
Sbjct: 768 TVTYTSLMYGYNKLGQSSE-VFALFEKMVAKGVKPDEVTYGLVIYAHCKEDNLVEAFKLR 826

Query: 293 LEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKS 352
            E+     L     ++ +I+  CK   + +AS LL EM   G KP+      L     ++
Sbjct: 827 DEVVGKGMLTKGTIHDLLITALCKREDLTEASKLLDEMGELGLKPSLAACSTLVRSFHEA 886

Query: 353 NLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEEL 407
             ++E  +  E G+K +         P   T + ++       D  +A NL ++L
Sbjct: 887 GKMDEATRVFE-GVKSLGL------VPDTTTLIDLVNGNLNDTDSEDARNLIKQL 934


>gi|125556563|gb|EAZ02169.1| hypothetical protein OsI_24261 [Oryza sativa Indica Group]
          Length = 991

 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 98/414 (23%), Positives = 167/414 (40%), Gaps = 57/414 (13%)

Query: 93  QNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNI 152
           +NE  Y  L+    +   ++ +L     M+  G S +   F  LI      GR      +
Sbjct: 251 RNEYSYTILIQGLCEAKCVREALVLFLMMKRDGCSPNVRAFTFLISGLCKSGRVGDARLL 310

Query: 153 LRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAV 212
              M  + V P V T++ ++   +    +   +K+   M+++   P++ +Y  L      
Sbjct: 311 FDAMPQNGVVPSVMTYNAMIVGYSKLGRMNDALKIKELMEKNGCHPDDWTYNTL------ 364

Query: 213 ARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPN-VRSKS 271
             +Y + +   E  E+ +           ++ +  L  G  +   +     + N + S  
Sbjct: 365 --IYGLCDQKTEEAEELLNNAVKEGFTPTVVTFTNLINGYCMAEKFDDALRMKNKMMSSK 422

Query: 272 YVLAIEAFGRI-------AQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKAS 324
             L ++ FG++        ++  A+EL  E+ +   +     Y S+I  YCK+G +D A 
Sbjct: 423 CKLDLQVFGKLINSLIKKDRLKEAKELLNEISANGLVPNVITYTSIIDGYCKSGKVDIAL 482

Query: 325 GLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETT 384
            +LK M  +GC+PNA TY  L  G  K        K L   M L+T  +     P + T 
Sbjct: 483 EVLKMMERDGCQPNAWTYNSLMYGLVKD-------KKLHKAMALLTKMQKDGIIPNVITY 535

Query: 385 LSIIEIFAEKGDVGNAENLFE-------------------ELKKANYTK--YTFV----- 418
            ++++   ++ D  NA  LFE                    L KA   +  Y+F+     
Sbjct: 536 TTLLQGQCDEHDFDNAFRLFEMMEQNGLKPDEHAYAVLTDALCKAGRAEEAYSFIVRKGV 595

Query: 419 ------YNTLIKAYVKAKIND--PNLLRRMILGGARPDAETYSLLKLAEQFQKK 464
                 Y TLI  + KA   D    L+ RMI  G  PD+ TYS+L  A   QK+
Sbjct: 596 ALTKVYYTTLIDGFSKAGNTDFAATLIERMIDEGCTPDSYTYSVLLHALCKQKR 649



 Score = 75.1 bits (183), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 86/418 (20%), Positives = 167/418 (39%), Gaps = 68/418 (16%)

Query: 94  NELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNIL 153
           N + Y +++      G + ++LE +K M   G   +   +N L+       +      +L
Sbjct: 461 NVITYTSIIDGYCKSGKVDIALEVLKMMERDGCQPNAWTYNSLMYGLVKDKKLHKAMALL 520

Query: 154 RQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATA---- 209
            +M+ D + P+V T+  L++ + ++H+ +   +++  M+++ ++P+E +Y +L  A    
Sbjct: 521 TKMQKDGIIPNVITYTTLLQGQCDEHDFDNAFRLFEMMEQNGLKPDEHAYAVLTDALCKA 580

Query: 210 ------------HAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGY---------- 247
                         VA       T ++   K+   +  +TL   +I  G           
Sbjct: 581 GRAEEAYSFIVRKGVALTKVYYTTLIDGFSKAGNTDFAATLIERMIDEGCTPDSYTYSVL 640

Query: 248 ---LAKGKDLERIWATVQE--LPNVRSK--SYVLAIEAFGRIAQVSRAEELWLEMQSVKQ 300
              L K K L      + +  L  ++    +Y + I+   R  +   A+ ++ EM S   
Sbjct: 641 LHALCKQKRLNEALPILDQMSLRGIKCTIFAYTILIDEMLREGKHDHAKRMYNEMTSSGH 700

Query: 301 LKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFK 360
             +   Y   I+ YCK G ++ A  L+ +M   G  P+ +TY  L  GC     ++  F 
Sbjct: 701 KPSATTYTVFINSYCKEGRLEDAEDLILKMEREGVAPDVVTYNILIDGCGHMGYIDRAFS 760

Query: 361 ALE---------------------LGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGN 399
            L+                     L   L   + V +S  W     ++IE+     D+  
Sbjct: 761 TLKRMVGASCEPNYWTYCLLLKHLLKGNLAYVRSVDTSGMW-----NLIEL-----DI-- 808

Query: 400 AENLFEELKKANYTKYTFVYNTLIKAYVKA-KINDPNLLRRMILG-GARPDAETYSLL 455
              L E + K         Y++LI  + KA ++ +  LL   + G G  P+ + Y+LL
Sbjct: 809 TWQLLERMVKHGLNPTVTTYSSLIAGFCKAGRLEEACLLLDHMCGKGLSPNEDIYTLL 866



 Score = 53.5 bits (127), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 39/150 (26%), Positives = 66/150 (44%), Gaps = 9/150 (6%)

Query: 308 NSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMK 367
           N+++  YC+ G + KA  L   M + GC+ N  +Y  L  G  ++  V E        + 
Sbjct: 222 NALVLGYCRTGELRKACWLFLMMPLMGCQRNEYSYTILIQGLCEAKCVRE-------ALV 274

Query: 368 LITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYV 427
           L    K    +P +     +I    + G VG+A  LF+ + +         YN +I  Y 
Sbjct: 275 LFLMMKRDGCSPNVRAFTFLISGLCKSGRVGDARLLFDAMPQNGVVPSVMTYNAMIVGYS 334

Query: 428 K-AKINDPNLLRRMI-LGGARPDAETYSLL 455
           K  ++ND   ++ ++   G  PD  TY+ L
Sbjct: 335 KLGRMNDALKIKELMEKNGCHPDDWTYNTL 364



 Score = 50.8 bits (120), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 60/302 (19%), Positives = 120/302 (39%), Gaps = 30/302 (9%)

Query: 152 ILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHA 211
           IL QM    +   +  + IL+     +   +   ++Y++M  S  +P+  +Y +   ++ 
Sbjct: 656 ILDQMSLRGIKCTIFAYTILIDEMLREGKHDHAKRMYNEMTSSGHKPSATTYTVFINSYC 715

Query: 212 VARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQEL------P 265
                  AE  +  +E+     +  T ++LI   G++     ++R ++T++ +      P
Sbjct: 716 KEGRLEDAEDLILKMEREGVAPDVVTYNILIDGCGHMGY---IDRAFSTLKRMVGASCEP 772

Query: 266 NVRSKSYVLAIEAFGRIAQVSRAEE--LW--LEMQSVKQL----------KATEQYNSVI 311
           N  +   +L     G +A V   +   +W  +E+    QL               Y+S+I
Sbjct: 773 NYWTYCLLLKHLLKGNLAYVRSVDTSGMWNLIELDITWQLLERMVKHGLNPTVTTYSSLI 832

Query: 312 SVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITT 371
           + +CK G +++A  LL  M   G  PN   Y  L   C  +   E+        +  ++ 
Sbjct: 833 AGFCKAGRLEEACLLLDHMCGKGLSPNEDIYTLLIKCCCDTKFFEK-------ALSFVSI 885

Query: 372 KKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKI 431
                  P LE+   ++     +GD    ++LF +L +  Y      +  L    +KA  
Sbjct: 886 MSECGFQPQLESYRLLVVGLCNEGDFEKVKSLFCDLLELGYNHDEVAWKILNDGLLKAGY 945

Query: 432 ND 433
            D
Sbjct: 946 VD 947


>gi|15240937|ref|NP_198098.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|122214236|sp|Q3E911.1|PP400_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g27460
 gi|332006308|gb|AED93691.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 491

 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 102/467 (21%), Positives = 188/467 (40%), Gaps = 42/467 (8%)

Query: 5   PRGEPVGSAFQSWMREGFPVHRGEIFHSINRLRKLQLNKRALEVMEWVIRERPYRPKELD 64
           PR   V S  Q  +  G  V   E+     RL +      AL++MEW+  ++       D
Sbjct: 50  PR-RSVTSLLQERIDSGHAVSLSELRLISKRLIRSNRYDLALQMMEWMENQKDIEFSVYD 108

Query: 65  YSYLLEFTIKNHGISQGEKLFCCIPKDYQNELLYNN------------LVIACLDKGVIK 112
            +  L+  IK HG+ QGE+ F         +LL+++            L+ A +   ++K
Sbjct: 109 IALRLDLIIKTHGLKQGEEYF--------EKLLHSSVSMRVAKSAYLPLLRAYVKNKMVK 160

Query: 113 LSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILM 172
            +   M+K+  LG  ++   FN ++ L  + G+ + +  ++  MK +K+  +V ++++ M
Sbjct: 161 EAEALMEKLNGLGFLVTPHPFNEMMKLYEASGQYEKVVMVVSMMKGNKIPRNVLSYNLWM 220

Query: 173 KIEANDHNIEGLMKVYSDM-KRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMT 231
                   +  +  VY +M     VE    S C LA  +  +     A   +E  EK + 
Sbjct: 221 NACCEVSGVAAVETVYKEMVGDKSVEVGWSSLCTLANVYIKSGFDEKARLVLEDAEKMLN 280

Query: 232 GNNWSTLDVLIILYGYLAKGKDLERIWATVQELPN-VRSKSYVLAIEAFGRIAQVSRAEE 290
            +N      LI LY  L   + + R+W   + +   +   +Y+  + +  +   +  AE 
Sbjct: 281 RSNRLGYFFLITLYASLGNKEGVVRLWEVSKSVCGRISCVNYICVLSSLVKTGDLEEAER 340

Query: 291 LWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCF 350
           ++ E ++          N ++  Y +NG I KA  L   +   G  PN  T+  L  G  
Sbjct: 341 VFSEWEAQCFNYDVRVSNVLLGAYVRNGEIRKAESLHGCVLERGGTPNYKTWEILMEGWV 400

Query: 351 KSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKA 410
           K   +E+   A+     L+     R   P     ++I E F ++  +  A     +L + 
Sbjct: 401 KCENMEKAIDAMHQVFVLMRRCHWR---PSHNIVMAIAEYFEKEEKIEEATAYVRDLHRL 457

Query: 411 NYTKYTFVYNTLIKAYVKAKINDPNLLRRMILGGARPDAETYSLLKL 457
                   Y  L++ +  AK               RP  + Y ++KL
Sbjct: 458 GLASLPL-YRLLLRMHEHAK---------------RPAYDIYEMMKL 488


>gi|357485461|ref|XP_003613018.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355514353|gb|AES95976.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 894

 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 71/278 (25%), Positives = 126/278 (45%), Gaps = 10/278 (3%)

Query: 181 IEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDV 240
           I+  ++++  MK     P+  +Y +L  A       T A  + E + ++    N  T  V
Sbjct: 276 IDEALELFFQMKEDGCFPDVPTYTVLVAAFCEVGKETEALKFFEEMVENGIEPNVYTYTV 335

Query: 241 LIILYGYLAKGKDLERIWATVQELPNVRSK-SYVLAIEAFGRIAQVSRAEELWLEMQSVK 299
           LI  +  + K  +   + +T+ E   V S   +   I+ + +   +  A  +   M+  K
Sbjct: 336 LIDYFCKVGKMDEGMEMLSTMLEKGLVSSVVPFNALIDGYCKRGMMEDAICVLDSMKLNK 395

Query: 300 QLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGF 359
               +  YN +I  +C+   +D+A  LL +M  N   PN +TY  L  G  K+ +V+  +
Sbjct: 396 VCPNSRTYNELICGFCRKKSMDRAMALLNKMYENKLSPNLVTYNTLIHGLCKARVVDSAW 455

Query: 360 KALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVY 419
           +   L +K           P   T  + I+   + G V  A  +FE LK+ +     F+Y
Sbjct: 456 RLHHLMIK-------DGFVPDQRTFCAFIDCLCKMGKVEQAHQVFESLKEKHAEANEFLY 508

Query: 420 NTLIKAYVKA-KINDPNLL-RRMILGGARPDAETYSLL 455
             LI  Y KA K +D +LL +RM+  G  P++ T+++L
Sbjct: 509 TALIDGYCKAEKFSDAHLLFKRMLFEGCFPNSITFNVL 546



 Score = 73.9 bits (180), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 67/278 (24%), Positives = 124/278 (44%), Gaps = 10/278 (3%)

Query: 181 IEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDV 240
           I+ L  ++ DM    VEPN +S+  +  AH       VA+ Y   L K     +  T   
Sbjct: 171 IDELNCLFKDMLNDGVEPNLISFNTMVNAHCKIGNVVVAKAYFCGLMKFGFCCDSFTYTS 230

Query: 241 LIILYGYLAKGKDLERIWATVQELPNVRSK-SYVLAIEAFGRIAQVSRAEELWLEMQSVK 299
           LI+ Y  + +  D  +++  + +   +R++ SY   I  F  + ++  A EL+ +M+   
Sbjct: 231 LILGYCKIHELGDAYKVFEIMPQEGCLRNEVSYTNLIHGFCEVGKIDEALELFFQMKEDG 290

Query: 300 QLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGF 359
                  Y  +++ +C+ G   +A    +EM  NG +PN  TY  L     K   ++EG 
Sbjct: 291 CFPDVPTYTVLVAAFCEVGKETEALKFFEEMVENGIEPNVYTYTVLIDYFCKVGKMDEG- 349

Query: 360 KALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVY 419
             +E+   ++    V S  P+     ++I+ + ++G + +A  + + +K       +  Y
Sbjct: 350 --MEMLSTMLEKGLVSSVVPF----NALIDGYCKRGMMEDAICVLDSMKLNKVCPNSRTY 403

Query: 420 NTLIKAYVKAKINDP--NLLRRMILGGARPDAETYSLL 455
           N LI  + + K  D    LL +M      P+  TY+ L
Sbjct: 404 NELICGFCRKKSMDRAMALLNKMYENKLSPNLVTYNTL 441



 Score = 72.4 bits (176), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 98/463 (21%), Positives = 182/463 (39%), Gaps = 76/463 (16%)

Query: 65  YSYLLEFTIKNHGISQGEKLFCCIPKD--YQNELLYNNLVIACLDKGVIKLSLEYMKKMR 122
           Y+ L+    K H +    K+F  +P++   +NE+ Y NL+    + G I  +LE   +M+
Sbjct: 228 YTSLILGYCKIHELGDAYKVFEIMPQEGCLRNEVSYTNLIHGFCEVGKIDEALELFFQMK 287

Query: 123 VLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILM----KIEAND 178
             G       +  L+      G+         +M  + + P+V T+ +L+    K+   D
Sbjct: 288 EDGCFPDVPTYTVLVAAFCEVGKETEALKFFEEMVENGIEPNVYTYTVLIDYFCKVGKMD 347

Query: 179 HNIE---------------------------GLMK----VYSDMKRSEVEPNEVSYCILA 207
             +E                           G+M+    V   MK ++V PN  +Y  L 
Sbjct: 348 EGMEMLSTMLEKGLVSSVVPFNALIDGYCKRGMMEDAICVLDSMKLNKVCPNSRTYNELI 407

Query: 208 TAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIW----ATVQE 263
                 +    A   +  + ++    N  T + LI  +G L K + ++  W      +++
Sbjct: 408 CGFCRKKSMDRAMALLNKMYENKLSPNLVTYNTLI--HG-LCKARVVDSAWRLHHLMIKD 464

Query: 264 LPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATE-QYNSVISVYCKNGFIDK 322
                 +++   I+   ++ +V +A +++  ++  K  +A E  Y ++I  YCK      
Sbjct: 465 GFVPDQRTFCAFIDCLCKMGKVEQAHQVFESLKE-KHAEANEFLYTALIDGYCKAEKFSD 523

Query: 323 ASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSST---- 378
           A  L K M   GC PN+IT+  L  G  K   VE+    +++  K      V + T    
Sbjct: 524 AHLLFKRMLFEGCFPNSITFNVLLDGLRKEGKVEDAMSLVDVMGKFDAKPTVHTYTILIE 583

Query: 379 ------------------------PWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTK 414
                                   P + T  + I+ +  +G +  AE +  ++K+     
Sbjct: 584 EILRESDFDRANMFLDQMISSGCQPNVVTYTAFIKAYCRQGRLLEAEEMVVKIKEEGILL 643

Query: 415 YTFVYNTLIKAYVKAKINDP--NLLRRMILGGARPDAETYSLL 455
            +F+Y+ L+ AY      D    +L RM   G  P  +TYS+L
Sbjct: 644 DSFIYDVLVNAYGCIGQLDSAFGVLIRMFDTGCEPSRQTYSIL 686



 Score = 47.8 bits (112), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 89/429 (20%), Positives = 162/429 (37%), Gaps = 77/429 (17%)

Query: 94  NELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNIL 153
           N   YN L+     K  +  ++  + KM     S + + +N LI       + + + +  
Sbjct: 399 NSRTYNELICGFCRKKSMDRAMALLNKMYENKLSPNLVTYNTLI---HGLCKARVVDSAW 455

Query: 154 RQ---MKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAH 210
           R    M  D   P   TF   +        +E   +V+  +K    E NE  Y  L   +
Sbjct: 456 RLHHLMIKDGFVPDQRTFCAFIDCLCKMGKVEQAHQVFESLKEKHAEANEFLYTALIDGY 515

Query: 211 AVARLYTVAETYVE------ALEKSMTGN--------------NWSTLDVL--------- 241
             A  ++ A    +          S+T N                S +DV+         
Sbjct: 516 CKAEKFSDAHLLFKRMLFEGCFPNSITFNVLLDGLRKEGKVEDAMSLVDVMGKFDAKPTV 575

Query: 242 ---IILYGYLAKGKDLERIWATVQEL------PNVRSKSYVLAIEAFGRIAQVSRAEELW 292
               IL   + +  D +R    + ++      PNV +  Y   I+A+ R  ++  AEE+ 
Sbjct: 576 HTYTILIEEILRESDFDRANMFLDQMISSGCQPNVVT--YTAFIKAYCRQGRLLEAEEMV 633

Query: 293 LEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKS 352
           ++++    L  +  Y+ +++ Y   G +D A G+L  M   GC+P+  TY  L       
Sbjct: 634 VKIKEEGILLDSFIYDVLVNAYGCIGQLDSAFGVLIRMFDTGCEPSRQTYSILL-----K 688

Query: 353 NLVEEGFKALELGMKLITTK-KVRSSTPW----LETTLSIIEIFAEKGDVGN-------- 399
           +L+ E +    +G+ L +T   V ++  W     E    + E   E+G V N        
Sbjct: 689 HLIFEKYNKEGMGLDLNSTNISVDNANIWKIADFEIITMLFEKMVEQGCVPNVNTYSKLI 748

Query: 400 -----------AENLFEELKKANYTKYTFVYNTLIKAYVKAKINDP--NLLRRMILGGAR 446
                      A  LF  +K++  +    ++N+L+ +  K  +++    LL  M+     
Sbjct: 749 KGLCKVEHLSLAFRLFNHMKESGISPSENIHNSLLSSCCKLGMHEEALRLLDSMMEYNHL 808

Query: 447 PDAETYSLL 455
              E+Y LL
Sbjct: 809 AHLESYKLL 817


>gi|78708657|gb|ABB47632.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
          Length = 1080

 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 87/361 (24%), Positives = 160/361 (44%), Gaps = 16/361 (4%)

Query: 94  NELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNIL 153
           N   YN LV   +  G  + +LE  + M V G   S   ++ L++   + G+R+ +  +L
Sbjct: 159 NAYTYNGLVYFLVKSGFDREALEVYRVMMVDGVVPSVRTYSVLMV---AFGKRRDVETVL 215

Query: 154 ---RQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAH 210
              R+M+A  V P+V ++ I +++       +   ++ + M+    +P+ +++ +L    
Sbjct: 216 WLLREMEAHGVKPNVYSYTICIRVLGQAKRFDEAYRILAKMENEGCKPDVITHTVLIQVL 275

Query: 211 AVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIW-ATVQELPNVRS 269
             A   + A+     ++KS    +  T   L+  +G     + +  IW A   +  N   
Sbjct: 276 CDAGRISDAKDVFWKMKKSDQKPDRVTYITLLDKFGDNGDSQSVMEIWNAMKADGYNDNV 335

Query: 270 KSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKE 329
            +Y   I+A  ++ +V  A E++ EM+    +     YNS+IS + K      A  L K 
Sbjct: 336 VAYTAVIDALCQVGRVFEALEMFDEMKQKGIVPEQYSYNSLISGFLKADRFGDALELFKH 395

Query: 330 MSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIE 389
           M ++G KPN  T+        KS    E  KA++   +L+ +K +    P +    +++ 
Sbjct: 396 MDIHGPKPNGYTHVLFINYYGKSG---ESIKAIQR-YELMKSKGI---VPDVVAGNAVLF 448

Query: 390 IFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKINDP--NLLRRMILGGARP 447
             A+ G +G A+ +F ELK    +  T  Y  +IK   KA   D    +   MI     P
Sbjct: 449 GLAKSGRLGMAKRVFHELKAMGVSPDTITYTMMIKCCSKASKFDEAVKIFYDMIENNCVP 508

Query: 448 D 448
           D
Sbjct: 509 D 509



 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 84/344 (24%), Positives = 139/344 (40%), Gaps = 18/344 (5%)

Query: 116  EYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIE 175
            E +KK +  G S+   ++N LI              +  +MK     P   T+++L+   
Sbjct: 741  ELVKKFKSFGVSLKTGLYNSLICGLVDENLIDIAEGLFAEMKELGCGPDEFTYNLLLDAM 800

Query: 176  ANDHNIEGLMKVYSDMKRSEVEPNEVSY-CILATAHAVARLYTVAETYVEALEKSMTGNN 234
                 IE ++KV  +M R   E   V+Y  I++      RL    + Y   + +   G +
Sbjct: 801  GKSMRIEEMLKVQEEMHRKGYESTYVTYNTIISGLVKSRRLEQAIDLYYNLMSQ---GFS 857

Query: 235  WSTLDVLIILYGYLAKGK--DLERIWATVQELPNVRSKSYVLAIEAFG-RIA-QVSRAEE 290
             +      +L G L  G+  D E ++  + E    ++   +  I   G RIA    +   
Sbjct: 858  PTPCTYGPLLDGLLKAGRIEDAENLFNEMLEY-GCKANCTIYNILLNGHRIAGNTEKVCH 916

Query: 291  LWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCF 350
            L+ +M         + Y  +I   CK G ++      +++   G +P+ ITY  L  G  
Sbjct: 917  LFQDMVDQGINPDIKSYTIIIDTLCKAGQLNDGLTYFRQLLEMGLEPDLITYNLLIDGLG 976

Query: 351  KSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKA 410
            KS       K LE  + L    + +   P L T  S+I    + G    A  ++EEL   
Sbjct: 977  KS-------KRLEEAVSLFNEMQKKGIVPNLYTYNSLILHLGKAGKAAEAGKMYEELLTK 1029

Query: 411  NYTKYTFVYNTLIKAYVKAKINDPNLLR--RMILGGARPDAETY 452
             +    F YN LI+ Y  +   D       RMI+GG  P++ TY
Sbjct: 1030 GWKPNVFTYNALIRGYSVSGSTDSAYAAYGRMIVGGCLPNSSTY 1073



 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 81/370 (21%), Positives = 146/370 (39%), Gaps = 37/370 (10%)

Query: 118 MKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEAN 177
           + KM   G     +    LI +    GR     ++  +MK     P   T+  L+    +
Sbjct: 253 LAKMENEGCKPDVITHTVLIQVLCDAGRISDAKDVFWKMKKSDQKPDRVTYITLLDKFGD 312

Query: 178 DHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHA-VARLYTVAETYVEALEKSMTGNNWS 236
           + + + +M++++ MK      N V+Y  +  A   V R++   E + E  +K +    +S
Sbjct: 313 NGDSQSVMEIWNAMKADGYNDNVVAYTAVIDALCQVGRVFEALEMFDEMKQKGIVPEQYS 372

Query: 237 TLDVLIILYGYLAK---GKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWL 293
                 ++ G+L     G  LE         P     ++VL I  +G+  +  +A + + 
Sbjct: 373 YNS---LISGFLKADRFGDALELFKHMDIHGPKPNGYTHVLFINYYGKSGESIKAIQRYE 429

Query: 294 EMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSN 353
            M+S   +      N+V+    K+G +  A  +  E+   G  P+ ITY  +   C K++
Sbjct: 430 LMKSKGIVPDVVAGNAVLFGLAKSGRLGMAKRVFHELKAMGVSPDTITYTMMIKCCSKAS 489

Query: 354 LVEEGFKALELGMK------------LITT--KKVRSSTPW----------LETTL---- 385
             +E  K     ++            LI T  K  R    W          LE T     
Sbjct: 490 KFDEAVKIFYDMIENNCVPDVLAVNSLIDTLYKAGRGDEAWRIFYQLKEMNLEPTDGTYN 549

Query: 386 SIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVK-AKINDP-NLLRRMILG 443
           +++     +G V    +L EE+  +NY      YNT++    K   +ND  ++L  M   
Sbjct: 550 TLLAGLGREGKVKEVMHLLEEMYHSNYPPNLITYNTILDCLCKNGAVNDALDMLYSMTTK 609

Query: 444 GARPDAETYS 453
           G  PD  +Y+
Sbjct: 610 GCIPDLSSYN 619



 Score = 58.9 bits (141), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 58/276 (21%), Positives = 115/276 (41%), Gaps = 11/276 (3%)

Query: 88  IPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRK 147
           +P+ Y     YN+L+   L       +LE  K M +  H      +  ++ +N      +
Sbjct: 367 VPEQYS----YNSLISGFLKADRFGDALELFKHMDI--HGPKPNGYTHVLFINYYGKSGE 420

Query: 148 TIPNILRQ--MKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCI 205
           +I  I R   MK+  + P V   + ++   A    +    +V+ ++K   V P+ ++Y +
Sbjct: 421 SIKAIQRYELMKSKGIVPDVVAGNAVLFGLAKSGRLGMAKRVFHELKAMGVSPDTITYTM 480

Query: 206 LATAHAVARLYTVA-ETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQEL 264
           +    + A  +  A + + + +E +   +  +   ++  LY    +G +  RI+  ++E+
Sbjct: 481 MIKCCSKASKFDEAVKIFYDMIENNCVPDVLAVNSLIDTLYK-AGRGDEAWRIFYQLKEM 539

Query: 265 P-NVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKA 323
                  +Y   +   GR  +V     L  EM           YN+++   CKNG ++ A
Sbjct: 540 NLEPTDGTYNTLLAGLGREGKVKEVMHLLEEMYHSNYPPNLITYNTILDCLCKNGAVNDA 599

Query: 324 SGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGF 359
             +L  M+  GC P+  +Y  +  G  K     E F
Sbjct: 600 LDMLYSMTTKGCIPDLSSYNTVIYGLVKEERYNEAF 635



 Score = 52.0 bits (123), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 76/395 (19%), Positives = 158/395 (40%), Gaps = 43/395 (10%)

Query: 98  YNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMK 157
           YN L+     +G +K  +  +++M    +  + + +N ++      G      ++L  M 
Sbjct: 548 YNTLLAGLGREGKVKEVMHLLEEMYHSNYPPNLITYNTILDCLCKNGAVNDALDMLYSMT 607

Query: 158 ADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYC-ILATAHAVA--- 213
                P +S+++ ++     +        ++  MK+  + P+  + C IL +   +    
Sbjct: 608 TKGCIPDLSSYNTVIYGLVKEERYNEAFSIFCQMKKVLI-PDYATLCTILPSFVKIGLMK 666

Query: 214 -RLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSKSY 272
             L+ + + +++   K+   +  S ++ ++   G + K  +   I A+      +    +
Sbjct: 667 EALHIIKDYFLQPGSKTDRSSCHSLMEGILKKAG-IEKSIEFAEIIAS----SGITLDDF 721

Query: 273 VLA--IEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEM 330
            L   I+   +  +   A EL  + +S      T  YNS+I        ID A GL  EM
Sbjct: 722 FLCPLIKHLCKQKKALEAHELVKKFKSFGVSLKTGLYNSLICGLVDENLIDIAEGLFAEM 781

Query: 331 SMNGCKPNAITYRHLALGCFKSNLVEE-----------GFKALELGMKLITTKKVRSS-- 377
              GC P+  TY  L     KS  +EE           G+++  +    I +  V+S   
Sbjct: 782 KELGCGPDEFTYNLLLDAMGKSMRIEEMLKVQEEMHRKGYESTYVTYNTIISGLVKSRRL 841

Query: 378 ---------------TPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTL 422
                          +P   T   +++   + G + +AENLF E+ +        +YN L
Sbjct: 842 EQAIDLYYNLMSQGFSPTPCTYGPLLDGLLKAGRIEDAENLFNEMLEYGCKANCTIYNIL 901

Query: 423 IKAYVKAKINDP--NLLRRMILGGARPDAETYSLL 455
           +  +  A   +   +L + M+  G  PD ++Y+++
Sbjct: 902 LNGHRIAGNTEKVCHLFQDMVDQGINPDIKSYTII 936



 Score = 48.1 bits (113), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 74/337 (21%), Positives = 138/337 (40%), Gaps = 17/337 (5%)

Query: 36   LRKLQLNKRALEVMEWVIRERPY--RPKELDYSYLLEFTIKNHGISQGEKLFC------C 87
            ++ L   K+ALE  E V + + +    K   Y+ L+   +  + I   E LF       C
Sbjct: 727  IKHLCKQKKALEAHELVKKFKSFGVSLKTGLYNSLICGLVDENLIDIAEGLFAEMKELGC 786

Query: 88   IPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRK 147
             P    +E  YN L+ A      I+  L+  ++M   G+  +Y+ +N +I       R +
Sbjct: 787  GP----DEFTYNLLLDAMGKSMRIEEMLKVQEEMHRKGYESTYVTYNTIISGLVKSRRLE 842

Query: 148  TIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILA 207
               ++   + +   +P   T+  L+        IE    ++++M     + N   Y IL 
Sbjct: 843  QAIDLYYNLMSQGFSPTPCTYGPLLDGLLKAGRIEDAENLFNEMLEYGCKANCTIYNILL 902

Query: 208  TAHAVA-RLYTVAETYVEALEKSMTGN--NWSTLDVLIILYGYLAKGKDLERIWATVQEL 264
              H +A     V   + + +++ +  +  +++ +   +   G L  G    R    +   
Sbjct: 903  NGHRIAGNTEKVCHLFQDMVDQGINPDIKSYTIIIDTLCKAGQLNDGLTYFRQLLEMGLE 962

Query: 265  PNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKAS 324
            P++   +Y L I+  G+  ++  A  L+ EMQ    +     YNS+I    K G   +A 
Sbjct: 963  PDL--ITYNLLIDGLGKSKRLEEAVSLFNEMQKKGIVPNLYTYNSLILHLGKAGKAAEAG 1020

Query: 325  GLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKA 361
             + +E+   G KPN  TY  L  G   S   +  + A
Sbjct: 1021 KMYEELLTKGWKPNVFTYNALIRGYSVSGSTDSAYAA 1057


>gi|356548144|ref|XP_003542463.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53700,
           chloroplastic-like [Glycine max]
          Length = 756

 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 77/324 (23%), Positives = 148/324 (45%), Gaps = 7/324 (2%)

Query: 44  RALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQG-EKLFCCIPKDYQNEL-LYNNL 101
           R  E + ++  E  + P ++ ++ L+    +   I QG E +   + K ++ ++  YN+L
Sbjct: 284 RIEEALRFIYEEEGFCPDQVTFNALVNGLCRTGHIKQGLEMMDFMLEKGFELDVYTYNSL 343

Query: 102 VIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKV 161
           +      G I  ++E +  M       + + +N LI         +    + R + +  V
Sbjct: 344 ISGLCKLGEIDEAVEILHHMVSRDCEPNTVTYNTLIGTLCKENHVEAATELARVLTSKGV 403

Query: 162 APHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAET 221
            P V TF+ L++      N E  M+++ +MK    +P+E +Y IL  +    R    A  
Sbjct: 404 LPDVCTFNSLIQGLCLTSNREIAMELFEEMKEKGCDPDEFTYSILIESLCSERRLKEALM 463

Query: 222 YVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSK-SYVLAIEAFG 280
            ++ +E S    N    + LI       +  D E I+  ++ L   RS  +Y   I    
Sbjct: 464 LLKEMELSGCARNVVVYNTLIDGLCKNNRVGDAEDIFDQMEMLGVSRSSVTYNTLINGLC 523

Query: 281 RIAQVSRAEELW--LEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPN 338
           +  +V  A +L   + M+ +K  K T  Y +++  +C+ G I +A+ +++ M++NGC+P+
Sbjct: 524 KSKRVEEAAQLMDQMIMEGLKPDKFT--YTTMLKYFCQQGDIKRAADIVQNMTLNGCEPD 581

Query: 339 AITYRHLALGCFKSNLVEEGFKAL 362
            +TY  L  G  K+  V+   K L
Sbjct: 582 IVTYGTLIGGLCKAGRVDVASKLL 605



 Score = 78.6 bits (192), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 92/386 (23%), Positives = 152/386 (39%), Gaps = 90/386 (23%)

Query: 147 KTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCIL 206
           K +  +  +M AD V P VSTF+IL++     H +   + +  DM    + P+E ++  L
Sbjct: 181 KLVETLHSKMVADAVPPDVSTFNILIRALCKAHQLRPAILMLEDMPNYGLRPDEKTFTTL 240

Query: 207 ATAHA----VARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQ 262
                    V     + E  VE      +G   +++ V +++ G   +G+  E +    +
Sbjct: 241 MQGFIEEADVEGALRIKELMVE------SGCELTSVSVNVLVNGLCKEGRIEEALRFIYE 294

Query: 263 E---LPN-VRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATE----QYNSVISVY 314
           E    P+ V   + V  +   G I Q        LEM      K  E     YNS+IS  
Sbjct: 295 EEGFCPDQVTFNALVNGLCRTGHIKQ-------GLEMMDFMLEKGFELDVYTYNSLISGL 347

Query: 315 CKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEG---------------- 358
           CK G ID+A  +L  M    C+PN +TY  L     K N VE                  
Sbjct: 348 CKLGEIDEAVEILHHMVSRDCEPNTVTYNTLIGTLCKENHVEAATELARVLTSKGVLPDV 407

Query: 359 --FKAL----------ELGMKLITTKKVRSSTP-------WLETTLS------------- 386
             F +L          E+ M+L    K +   P        +E+  S             
Sbjct: 408 CTFNSLIQGLCLTSNREIAMELFEEMKEKGCDPDEFTYSILIESLCSERRLKEALMLLKE 467

Query: 387 ---------------IIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKI 431
                          +I+   +   VG+AE++F++++    ++ +  YNTLI    K+K 
Sbjct: 468 MELSGCARNVVVYNTLIDGLCKNNRVGDAEDIFDQMEMLGVSRSSVTYNTLINGLCKSKR 527

Query: 432 ND--PNLLRRMILGGARPDAETYSLL 455
            +    L+ +MI+ G +PD  TY+ +
Sbjct: 528 VEEAAQLMDQMIMEGLKPDKFTYTTM 553



 Score = 55.5 bits (132), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 74/335 (22%), Positives = 143/335 (42%), Gaps = 26/335 (7%)

Query: 132 VFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEG-LMKVYSD 190
           VF+ L+   +  G   ++  +LRQM + K+    STF I ++  A  H++   +  ++  
Sbjct: 94  VFHELLRQLARAGSFDSMLTLLRQMHSSKIPVDESTFLIFLETYATSHHLHAEINPLFLL 153

Query: 191 MKRS-EVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLA 249
           M+R   V+P+   Y +  +    A    + ET    +       + ST ++LI     L 
Sbjct: 154 MERDFAVKPDTRFYNVALSLLVKANKLKLVETLHSKMVADAVPPDVSTFNILI---RALC 210

Query: 250 KGKDLERIWATVQELPNV----RSKSYVLAIEAFGRIAQVS---RAEELWLEMQSVKQLK 302
           K   L      ++++PN       K++   ++ F   A V    R +EL +E  S  +L 
Sbjct: 211 KAHQLRPAILMLEDMPNYGLRPDEKTFTTLMQGFIEEADVEGALRIKELMVE--SGCELT 268

Query: 303 ATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKAL 362
           +    N +++  CK G I++A   + E    G  P+ +T+  L  G  ++  +++G + +
Sbjct: 269 SV-SVNVLVNGLCKEGRIEEALRFIYE--EEGFCPDQVTFNALVNGLCRTGHIKQGLEMM 325

Query: 363 ELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTL 422
           +  ++       +     + T  S+I    + G++  A  +   +   +    T  YNTL
Sbjct: 326 DFMLE-------KGFELDVYTYNSLISGLCKLGEIDEAVEILHHMVSRDCEPNTVTYNTL 378

Query: 423 IKAYVKAKINDP--NLLRRMILGGARPDAETYSLL 455
           I    K    +    L R +   G  PD  T++ L
Sbjct: 379 IGTLCKENHVEAATELARVLTSKGVLPDVCTFNSL 413



 Score = 46.6 bits (109), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 76/367 (20%), Positives = 138/367 (37%), Gaps = 43/367 (11%)

Query: 17  WMREGFPVHRGEIFHSINRLRKLQLNKRALEVMEWVIRERPYRPKELDYSYLLEFTIKNH 76
           +  EGF   +      +N L +    K+ LE+M++++ E+ +      Y+ L+    K  
Sbjct: 293 YEEEGFCPDQVTFNALVNGLCRTGHIKQGLEMMDFML-EKGFELDVYTYNSLISGLCKLG 351

Query: 77  GISQG-EKLFCCIPKDYQ-NELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFN 134
            I +  E L   + +D + N + YN L+     +  ++ + E  + +   G       FN
Sbjct: 352 EIDEAVEILHHMVSRDCEPNTVTYNTLIGTLCKENHVEAATELARVLTSKGVLPDVCTFN 411

Query: 135 RLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRS 194
            LI        R+    +  +MK     P   T+ IL++   ++  ++  + +  +M+ S
Sbjct: 412 SLIQGLCLTSNREIAMELFEEMKEKGCDPDEFTYSILIESLCSERRLKEALMLLKEMELS 471

Query: 195 EVEPNEVSYCILATAH-------------------AVARLYTVAETYVEALEKSMTGNNW 235
               N V Y  L                        V+R      T +  L KS      
Sbjct: 472 GCARNVVVYNTLIDGLCKNNRVGDAEDIFDQMEMLGVSRSSVTYNTLINGLCKSKRVEEA 531

Query: 236 STLDVLIILYG-------------YLAKGKDLERIWATVQEL------PNVRSKSYVLAI 276
           + L   +I+ G             Y  +  D++R    VQ +      P++   +Y   I
Sbjct: 532 AQLMDQMIMEGLKPDKFTYTTMLKYFCQQGDIKRAADIVQNMTLNGCEPDI--VTYGTLI 589

Query: 277 EAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCK 336
               +  +V  A +L   +Q    +   + YN VI   CK     +A  L +EM   G  
Sbjct: 590 GGLCKAGRVDVASKLLRSVQMKGMVLTPQAYNPVIQALCKRKRTKEAMRLFREMMEKGDP 649

Query: 337 PNAITYR 343
           P+ ITY+
Sbjct: 650 PDVITYK 656


>gi|449500717|ref|XP_004161177.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At1g02060, chloroplastic-like [Cucumis sativus]
          Length = 720

 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 101/433 (23%), Positives = 180/433 (41%), Gaps = 22/433 (5%)

Query: 39  LQLNKRALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQGEKLFCCIPKDYQNEL-- 96
           L+   +AL+   W  +E  Y   E  Y  +LE   +N  ++        I K  +  +  
Sbjct: 89  LRDTSKALQFFNWA-QEMGYTHTEQSYFSMLEILGRNRHLNTARNFLFSIEKRSRGIVKL 147

Query: 97  ---LYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNIL 153
               +N+L+      G+ + S++    M+  G S S + FN L+ +    GR      + 
Sbjct: 148 EARFFNSLMRNFNRAGLFQESIKVFTIMKSHGVSPSVVTFNSLLTILLKRGRTNMAKKVY 207

Query: 154 RQMKAD-KVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAV 212
            +M +   V P   TF+IL++    +  ++   ++++D+ R   EP+ V+Y  L      
Sbjct: 208 DEMLSTYGVTPDTFTFNILIRGFCMNGMVDDGFRIFNDLSRFGCEPDVVTYNTLVDGLCR 267

Query: 213 ARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSK-- 270
           A   TVA   V+ + K     N + +    ++ GY AK +++E+  A  +E+ N   K  
Sbjct: 268 AGKVTVAYNVVKGMGKKSVDLNPNVVTYTTLIRGYCAK-REIEKALAVFEEMVNQGLKAN 326

Query: 271 --SYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKA-TEQYNSVISVYCKNGFIDKASGLL 327
             +Y   I+      +  + +++             T  +N+++  +C  G +D A  + 
Sbjct: 327 NITYNTLIKGLCEARKFEKIKDILEGTAGDGTFSPDTCTFNTLMHCHCHAGNLDDALKVF 386

Query: 328 KEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSST---PWLETT 384
           + MS    +P++ TY  L     +    E   KA +L  KL+  K + S     P +   
Sbjct: 387 ERMSELKIQPDSATYSALVRSLCQGGHYE---KAEDLLDKLLERKILLSGDGCKPLVAAY 443

Query: 385 LSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKINDPN--LLRRMIL 442
             I +   E G    AE  F +L +   T+    Y TLI  + K    +    LL  M+ 
Sbjct: 444 NPIFKYLCETGKTKKAEKAFRQLMRRG-TQDPPSYKTLIMGHCKEGTFESGYELLVLMLR 502

Query: 443 GGARPDAETYSLL 455
               PD ETY  L
Sbjct: 503 KDFXPDFETYESL 515


>gi|299471535|emb|CBN80021.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 607

 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 88/374 (23%), Positives = 154/374 (41%), Gaps = 28/374 (7%)

Query: 94  NELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNIL 153
           N + Y++++ AC  +G  K++L+ +++M+ +  + + + +N  I   +  GR K   ++L
Sbjct: 242 NVISYSSVITACAKEGQWKIALDLLREMKAMRLAPNIITYNAAIDACAKGGRWKEAIDLL 301

Query: 154 RQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVA 213
           R+M    + P V ++  ++   +     +  + +  +M    + PN +SY     A A  
Sbjct: 302 REMPTVGLPPDVVSYSSVIDACSKGDRWKEAIDILREMPTVGLSPNAISYNSAIDACAKG 361

Query: 214 RLYTVAETYVEALEKSMTGNNWSTLDVLIILYGY------LAKGKDLERIWATVQELPNV 267
             +  A+  +  +          T  V   + GY       AKG+  +   A ++E+P V
Sbjct: 362 GQWKEAKGLLREMP---------TAGVTQRVIGYNSAIAACAKGEQWKEALALLREMPTV 412

Query: 268 RSK----SYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKA 323
                  SY  AI+A G+     +A+EL  EM +V        YNS I    +    ++A
Sbjct: 413 GLHTTVFSYSSAIDACGKGNLWIKAKELLREMATVGLAPNEVCYNSAIDACGRGDQWEEA 472

Query: 324 SGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLET 383
             LL+EM   G  P+  +Y      C K +  +E    L+               P L  
Sbjct: 473 VDLLREMPTVGLSPDVFSYSSAIAACAKGDQWKEALAVLK-------EMSAAGLAPDLIC 525

Query: 384 TLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKI--NDPNLLRRMI 441
             S I+  ++ G    A  L  E++ A  T     Y++ I A V+         LL  M 
Sbjct: 526 YNSAIDACSKGGRWKMAVALLGEMRAAGLTPNIISYSSAIDACVRGGQWKEGIALLEEMR 585

Query: 442 LGGARPDAETYSLL 455
             G  PD  TY  L
Sbjct: 586 GSGVVPDVITYHAL 599



 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 92/372 (24%), Positives = 148/372 (39%), Gaps = 28/372 (7%)

Query: 94  NELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNIL 153
           N ++YN+ + +C   G  ++++  +K+M  +G +   + ++  I      GR +    + 
Sbjct: 137 NVIIYNSAINSCAKAGQWEIAVSLVKEMATVGLAPDVISYSSAISACGRGGRWEEALELF 196

Query: 154 RQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVA 213
             M+   VAP V T+   +   AN    +  + +   +    + PN +SY  + TA A  
Sbjct: 197 EDMRTSGVAPDVITYGSAIAACANGGRWKEAVSLLRKIPTVGLTPNVISYSSVITACAKE 256

Query: 214 RLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGK------DLERIWATVQELPNV 267
             + +A   +  ++      N  T +  I      AKG       DL R   TV   P+V
Sbjct: 257 GQWKIALDLLREMKAMRLAPNIITYNAAI---DACAKGGRWKEAIDLLREMPTVGLPPDV 313

Query: 268 RSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLL 327
            S S V  I+A  +  +   A ++  EM +V        YNS I    K G   +A GLL
Sbjct: 314 VSYSSV--IDACSKGDRWKEAIDILREMPTVGLSPNAISYNSAIDACAKGGQWKEAKGLL 371

Query: 328 KEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSI 387
           +EM   G     I Y      C K    E+  +AL L  ++ T          L TT+  
Sbjct: 372 REMPTAGVTQRVIGYNSAIAACAKG---EQWKEALALLREMPTVG--------LHTTVFS 420

Query: 388 IEIFAEKGDVGN----AENLFEELKKANYTKYTFVYNTLIKAYVKAKINDP--NLLRRMI 441
                +    GN    A+ L  E+           YN+ I A  +    +   +LLR M 
Sbjct: 421 YSSAIDACGKGNLWIKAKELLREMATVGLAPNEVCYNSAIDACGRGDQWEEAVDLLREMP 480

Query: 442 LGGARPDAETYS 453
             G  PD  +YS
Sbjct: 481 TVGLSPDVFSYS 492



 Score = 73.2 bits (178), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 74/334 (22%), Positives = 134/334 (40%), Gaps = 43/334 (12%)

Query: 98  YNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMK 157
           Y   + AC   G  K++L+ +++M     + + +++N  I   +  G+ +   +++++M 
Sbjct: 106 YGAAINACARGGRWKIALDLLREMLARDVTPNVIIYNSAINSCAKAGQWEIAVSLVKEMA 165

Query: 158 ADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYT 217
              +AP V ++   +         E  ++++ DM+ S V P+ +                
Sbjct: 166 TVGLAPDVISYSSAISACGRGGRWEEALELFEDMRTSGVAPDVI---------------- 209

Query: 218 VAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSKSYVLAIE 277
              TY  A+     G  W              +   L R   TV   PNV S S V  I 
Sbjct: 210 ---TYGSAIAACANGGRWK-------------EAVSLLRKIPTVGLTPNVISYSSV--IT 251

Query: 278 AFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKP 337
           A  +  Q   A +L  EM++++       YN+ I    K G   +A  LL+EM   G  P
Sbjct: 252 ACAKEGQWKIALDLLREMKAMRLAPNIITYNAAIDACAKGGRWKEAIDLLREMPTVGLPP 311

Query: 338 NAITYRHLALGCFKSNLVEEGFKAL-ELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGD 396
           + ++Y  +   C K +  +E    L E+    ++   +  +        S I+  A+ G 
Sbjct: 312 DVVSYSSVIDACSKGDRWKEAIDILREMPTVGLSPNAISYN--------SAIDACAKGGQ 363

Query: 397 VGNAENLFEELKKANYTKYTFVYNTLIKAYVKAK 430
              A+ L  E+  A  T+    YN+ I A  K +
Sbjct: 364 WKEAKGLLREMPTAGVTQRVIGYNSAIAACAKGE 397



 Score = 47.0 bits (110), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 50/197 (25%), Positives = 75/197 (38%), Gaps = 11/197 (5%)

Query: 261 VQELPN--VRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNG 318
           +++LP   +  KSY +AI A GR  Q  +A  L  EM +         Y++VI    K G
Sbjct: 23  MKKLPGWLIDQKSYCMAITACGRGGQWEQAVRLLREMPTEGAAPDLSAYSAVIDACAKGG 82

Query: 319 FIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSST 378
               A   L EM   G  P+A +Y      C +           ++ + L+     R  T
Sbjct: 83  QWKMAVFFLMEMPTKGIAPDARSYGAAINACARGGR-------WKIALDLLREMLARDVT 135

Query: 379 PWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKINDP--NL 436
           P +    S I   A+ G    A +L +E+           Y++ I A  +    +    L
Sbjct: 136 PNVIIYNSAINSCAKAGQWEIAVSLVKEMATVGLAPDVISYSSAISACGRGGRWEEALEL 195

Query: 437 LRRMILGGARPDAETYS 453
              M   G  PD  TY 
Sbjct: 196 FEDMRTSGVAPDVITYG 212



 Score = 44.7 bits (104), Expect = 0.100,   Method: Compositional matrix adjust.
 Identities = 59/292 (20%), Positives = 112/292 (38%), Gaps = 40/292 (13%)

Query: 98  YNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMK 157
           Y++++ AC      K +++ +++M  +G S + + +N  I   +  G+ K    +LR+M 
Sbjct: 316 YSSVIDACSKGDRWKEAIDILREMPTVGLSPNAISYNSAIDACAKGGQWKEAKGLLREMP 375

Query: 158 ADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYT 217
              V   V  ++  +   A     +  + +  +M    +     SY     A     L+ 
Sbjct: 376 TAGVTQRVIGYNSAIAACAKGEQWKEALALLREMPTVGLHTTVFSYSSAIDACGKGNLWI 435

Query: 218 VAE----------------TYVEALEKSMTGNNW----------STLDVLIILYGY---- 247
            A+                 Y  A++    G+ W           T+ +   ++ Y    
Sbjct: 436 KAKELLREMATVGLAPNEVCYNSAIDACGRGDQWEEAVDLLREMPTVGLSPDVFSYSSAI 495

Query: 248 --LAKGKDLERIWATVQEL------PNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVK 299
              AKG   +   A ++E+      P++    Y  AI+A  +  +   A  L  EM++  
Sbjct: 496 AACAKGDQWKEALAVLKEMSAAGLAPDL--ICYNSAIDACSKGGRWKMAVALLGEMRAAG 553

Query: 300 QLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFK 351
                  Y+S I    + G   +   LL+EM  +G  P+ ITY  L + C K
Sbjct: 554 LTPNIISYSSAIDACVRGGQWKEGIALLEEMRGSGVVPDVITYHALMVTCAK 605


>gi|28393724|gb|AAO42273.1| unknown protein [Arabidopsis thaliana]
          Length = 642

 Score = 82.8 bits (203), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 90/402 (22%), Positives = 173/402 (43%), Gaps = 22/402 (5%)

Query: 33  INRLRKLQLNKRALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQGEKLF------C 86
           I+   KL  N  A+ + +  +++   +P E  Y+ LL    K   + +   LF       
Sbjct: 240 ISSYEKLGRNDSAIRLFDE-MKDNCMQPTEKIYTTLLGIYFKVGKVEKALDLFEEMKRAG 298

Query: 87  CIPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRR 146
           C P  Y     Y  L+      G +  +  + K M   G +   +  N L+ +    GR 
Sbjct: 299 CSPTVYT----YTELIKGLGKAGRVDEAYGFYKDMLRDGLTPDVVFLNNLMNILGKVGRV 354

Query: 147 KTIPNILRQMKADKVAPHVSTFHILMK--IEANDHNIEGLMKVYSDMKRSEVEPNEVSYC 204
           + + N+  +M   +  P V +++ ++K   E+  H +  +   +  MK   V P+E +Y 
Sbjct: 355 EELTNVFSEMGMWRCTPTVVSYNTVIKALFESKAH-VSEVSSWFDKMKADSVSPSEFTYS 413

Query: 205 ILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQE- 263
           IL   +        A   +E +++       +    LI   G   + +  + ++  ++E 
Sbjct: 414 ILIDGYCKTNRVEKALLLLEEMDEKGFPPCPAAYCSLINALGKAKRYEAADELFKELKEN 473

Query: 264 LPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKA 323
             NV S+ Y + I+ FG+  ++S A +L+ EM++         YN+++S   K G I++A
Sbjct: 474 FGNVSSRVYAVMIKHFGKCGKLSEAVDLFNEMKNQGSGPDVYAYNALMSGMVKAGMINEA 533

Query: 324 SGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLET 383
           + LL++M  NGC+ + I   ++ L  F    V    +A+E    +  T K     P   T
Sbjct: 534 NSLLRKMEENGCRAD-INSHNIILNGFARTGVPR--RAIE----MFETIKHSGIKPDGVT 586

Query: 384 TLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKA 425
             +++  FA  G    A  +  E+K   +      Y++++ A
Sbjct: 587 YNTLLGCFAHAGMFEEAARMMREMKDKGFEYDAITYSSILDA 628



 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 87/371 (23%), Positives = 163/371 (43%), Gaps = 28/371 (7%)

Query: 98  YNNLVIACLDKGVIKLSLEYMKKMRVLGHSI-SYLVFNRLIILNSSPGRRKTIPNILRQM 156
           YN++++  + +G  +   E   +M   G      + ++ LI      GR  +   +  +M
Sbjct: 200 YNSVILMLMQEGQHEKVHEVYTEMCNEGDCFPDTITYSALISSYEKLGRNDSAIRLFDEM 259

Query: 157 KADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVA-RL 215
           K + + P    +  L+ I      +E  + ++ +MKR+   P   +Y  L      A R+
Sbjct: 260 KDNCMQPTEKIYTTLLGIYFKVGKVEKALDLFEEMKRAGCSPTVYTYTELIKGLGKAGRV 319

Query: 216 YTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATV---QELPNVRSKSY 272
                 Y + L   +T  +   L+ L+ + G + + ++L  +++ +   +  P V S + 
Sbjct: 320 DEAYGFYKDMLRDGLT-PDVVFLNNLMNILGKVGRVEELTNVFSEMGMWRCTPTVVSYNT 378

Query: 273 VLA--IEAFGRIAQVSRAEELWLEMQSVKQLKATE-QYNSVISVYCKNGFIDKASGLLKE 329
           V+    E+   +++VS     W +      +  +E  Y+ +I  YCK   ++KA  LL+E
Sbjct: 379 VIKALFESKAHVSEVSS----WFDKMKADSVSPSEFTYSILIDGYCKTNRVEKALLLLEE 434

Query: 330 MSMNGCKPNAITYRHL--ALGCFKS-NLVEEGFKALELGMKLITTKKVRSSTPWLETTLS 386
           M   G  P    Y  L  ALG  K     +E FK L+     ++++              
Sbjct: 435 MDEKGFPPCPAAYCSLINALGKAKRYEAADELFKELKENFGNVSSR----------VYAV 484

Query: 387 IIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAK-INDPN-LLRRMILGG 444
           +I+ F + G +  A +LF E+K        + YN L+   VKA  IN+ N LLR+M   G
Sbjct: 485 MIKHFGKCGKLSEAVDLFNEMKNQGSGPDVYAYNALMSGMVKAGMINEANSLLRKMEENG 544

Query: 445 ARPDAETYSLL 455
            R D  +++++
Sbjct: 545 CRADINSHNII 555



 Score = 56.6 bits (135), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 48/176 (27%), Positives = 77/176 (43%), Gaps = 10/176 (5%)

Query: 276 IEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNG- 334
           ++A GR   VS+A  ++ + +  K    +  YNSVI +  + G  +K   +  EM   G 
Sbjct: 169 VKALGRAKMVSKALSVFYQAKGRKCKPTSSTYNSVILMLMQEGQHEKVHEVYTEMCNEGD 228

Query: 335 CKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEK 394
           C P+ ITY  L           E     +  ++L    K     P  +   +++ I+ + 
Sbjct: 229 CFPDTITYSALISS-------YEKLGRNDSAIRLFDEMKDNCMQPTEKIYTTLLGIYFKV 281

Query: 395 GDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKINDP--NLLRRMILGGARPD 448
           G V  A +LFEE+K+A  +   + Y  LIK   KA   D      + M+  G  PD
Sbjct: 282 GKVEKALDLFEEMKRAGCSPTVYTYTELIKGLGKAGRVDEAYGFYKDMLRDGLTPD 337


>gi|302818914|ref|XP_002991129.1| hypothetical protein SELMODRAFT_236212 [Selaginella moellendorffii]
 gi|300141060|gb|EFJ07775.1| hypothetical protein SELMODRAFT_236212 [Selaginella moellendorffii]
          Length = 614

 Score = 82.8 bits (203), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 96/413 (23%), Positives = 162/413 (39%), Gaps = 66/413 (15%)

Query: 59  RPKELDYSYLLEFTIKNHGISQGEKLFCCIPKDYQNELLYNNLVIACLDKGVIKL----- 113
           +P    Y+ LL    +   I Q ++   C  +     L+ N  + + L  G+ K      
Sbjct: 6   QPDVYTYAALLRGFCRGGEIDQAQR---CFDEMRSKNLVPNVFLCSILIDGLCKAKRSID 62

Query: 114 SLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMK 173
           +L   + M+  G     +++  L+       R      IL +M+     P+V T++ L+ 
Sbjct: 63  ALRCFRAMQGSGIVADTVIYTALLSGLWKEKRLDQALAILHEMRDHGCEPNVVTYNSLID 122

Query: 174 IEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGN 233
               ++  +   +++  MK  E  P+ V+Y                              
Sbjct: 123 GLCKNNEPDRAQELFEHMKSVECSPSMVTY------------------------------ 152

Query: 234 NWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSK-----------SYVLAIEAFGRI 282
             +TL     L G    GK LER  A  QE+ + RS            +Y + I+   + 
Sbjct: 153 --NTL-----LDGLFRTGK-LERAMALFQEMLDRRSHDMDDRCSPNVITYSVLIDGLCKA 204

Query: 283 AQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITY 342
            +VS+A EL   M++         Y  ++   CK   +  A  +L+EM   GC PN +TY
Sbjct: 205 NRVSQAVELLESMKARGCSPDVITYTILVDGLCKESKVAAAWEVLREMLDAGCVPNLVTY 264

Query: 343 RHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAEN 402
             L  G  ++  V +        + L+     R  TP + T  ++I+   + G V +A  
Sbjct: 265 NSLLHGLCRARRVSDA-------LALMRDMTCRGCTPNVVTYGTLIDGLCKVGRVKDACA 317

Query: 403 LFEELKKANYTKYTFVYNTLIKAYVKAKINDPN--LLRRMILGGARPDAETYS 453
           +  ++     T    +YN LI    KA   D +  LLRR + GG +PD  TYS
Sbjct: 318 MLADMIDKGGTPDLMIYNMLINGLCKADQVDESIALLRRAVSGGIKPDVVTYS 370



 Score = 75.9 bits (185), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 78/308 (25%), Positives = 135/308 (43%), Gaps = 27/308 (8%)

Query: 163 PHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETY 222
           P V T+  L++       I+   + + +M+   + PN     IL      A+    A   
Sbjct: 7   PDVYTYAALLRGFCRGGEIDQAQRCFDEMRSKNLVPNVFLCSILIDGLCKAKRSIDALRC 66

Query: 223 VEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQEL------PNVRSKSYVLAI 276
             A++ S  G    T+    +L G L K K L++  A + E+      PNV   +Y   I
Sbjct: 67  FRAMQGS--GIVADTVIYTALLSG-LWKEKRLDQALAILHEMRDHGCEPNV--VTYNSLI 121

Query: 277 EAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEM------ 330
           +   +  +  RA+EL+  M+SV+   +   YN+++    + G +++A  L +EM      
Sbjct: 122 DGLCKNNEPDRAQELFEHMKSVECSPSMVTYNTLLDGLFRTGKLERAMALFQEMLDRRSH 181

Query: 331 SMNG-CKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIE 389
            M+  C PN ITY  L  G  K+N V +  + LE       + K R  +P + T   +++
Sbjct: 182 DMDDRCSPNVITYSVLIDGLCKANRVSQAVELLE-------SMKARGCSPDVITYTILVD 234

Query: 390 IFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKA-KINDP-NLLRRMILGGARP 447
              ++  V  A  +  E+  A        YN+L+    +A +++D   L+R M   G  P
Sbjct: 235 GLCKESKVAAAWEVLREMLDAGCVPNLVTYNSLLHGLCRARRVSDALALMRDMTCRGCTP 294

Query: 448 DAETYSLL 455
           +  TY  L
Sbjct: 295 NVVTYGTL 302



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 94/427 (22%), Positives = 178/427 (41%), Gaps = 36/427 (8%)

Query: 33  INRLRKLQLNKRALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQGEKLF------C 86
           I+ L K     +A+E++E  ++ R   P  + Y+ L++   K   ++   ++        
Sbjct: 198 IDGLCKANRVSQAVELLES-MKARGCSPDVITYTILVDGLCKESKVAAAWEVLREMLDAG 256

Query: 87  CIPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRR 146
           C+P    N + YN+L+        +  +L  M+ M   G + + + +  LI      GR 
Sbjct: 257 CVP----NLVTYNSLLHGLCRARRVSDALALMRDMTCRGCTPNVVTYGTLIDGLCKVGRV 312

Query: 147 KTIPNILRQMKADKVAPHVSTFHILM----KIEANDHNIEGLMKVYSDMKRSEVEPNEVS 202
           K    +L  M      P +  +++L+    K +  D +I  L +  S      ++P+ V+
Sbjct: 313 KDACAMLADMIDKGGTPDLMIYNMLINGLCKADQVDESIALLRRAVS----GGIKPDVVT 368

Query: 203 YCILATAHAVARLYTVAET-----YVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERI 257
           Y   +  + + R   + E      YV++         +STL   +   G + +  DL  +
Sbjct: 369 Y--SSVIYGLCRSNRLDEACRLLLYVKSRGCPPDVILYSTLIDGLCKAGKVDEAFDLYEV 426

Query: 258 WATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKN 317
            A   +  +    +Y   I+   +  +V  A  L   M  +    +T  YNS+I   C  
Sbjct: 427 MA--GDGCDADVVTYSTLIDGLCKAGRVDEAHLLLARMVRMGTPPSTMTYNSLIKGLCDL 484

Query: 318 GFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSS 377
             +D+A  L++EM  + C P+A+TY  L  G  +   V+     LE        + V + 
Sbjct: 485 NHLDEAIELVEEMERSNCAPSAVTYNILIHGMCRMERVDSAVVLLEQA----KARCVAAG 540

Query: 378 TPWLETTL--SIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKINDPN 435
              L+T    S+I+   + G V  A + F+E+           Y+ L++   K+K  D +
Sbjct: 541 GTALDTIAYSSLIDGLCKAGRVAEALDYFQEMIDNGVIPDHITYSILLEGLKKSK--DLH 598

Query: 436 LLRRMIL 442
            LR ++L
Sbjct: 599 ELRHLVL 605


>gi|15237662|ref|NP_201237.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75171655|sp|Q9FMF6.1|PP444_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g64320, mitochondrial; Flags: Precursor
 gi|9759408|dbj|BAB09863.1| unnamed protein product [Arabidopsis thaliana]
 gi|332010486|gb|AED97869.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 730

 Score = 82.8 bits (203), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 99/436 (22%), Positives = 174/436 (39%), Gaps = 77/436 (17%)

Query: 56  RPYRPKELDYSYLLEFTIKNHGISQGEKLFCCIPK-------------------DYQNEL 96
           R + P ++ Y YL+    K   +   + LF  IPK                   D    +
Sbjct: 316 RGFAPDDITYGYLMNGLCKIGRVDAAKDLFYRIPKPEIVIFNTLIHGFVTHGRLDDAKAV 375

Query: 97  L---------------YNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNS 141
           L               YN+L+     +G++ L+LE +  MR  G   +   +  L+    
Sbjct: 376 LSDMVTSYGIVPDVCTYNSLIYGYWKEGLVGLALEVLHDMRNKGCKPNVYSYTILVDGFC 435

Query: 142 SPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEV 201
             G+     N+L +M AD + P+   F+ L+     +H I   ++++ +M R   +P+  
Sbjct: 436 KLGKIDEAYNVLNEMSADGLKPNTVGFNCLISAFCKEHRIPEAVEIFREMPRKGCKPDVY 495

Query: 202 SYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATV 261
           ++  L +              V+ ++ ++    W   D  +I  G +A            
Sbjct: 496 TFNSLISGLC----------EVDEIKHAL----WLLRD--MISEGVVAN----------- 528

Query: 262 QELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFID 321
                  + +Y   I AF R  ++  A +L  EM           YNS+I   C+ G +D
Sbjct: 529 -------TVTYNTLINAFLRRGEIKEARKLVNEMVFQGSPLDEITYNSLIKGLCRAGEVD 581

Query: 322 KASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWL 381
           KA  L ++M  +G  P+ I+   L  G  +S +VEE   A+E   +++    +R STP +
Sbjct: 582 KARSLFEKMLRDGHAPSNISCNILINGLCRSGMVEE---AVEFQKEMV----LRGSTPDI 634

Query: 382 ETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKI--NDPNLLRR 439
            T  S+I      G + +   +F +L+       T  +NTL+    K     +   LL  
Sbjct: 635 VTFNSLINGLCRAGRIEDGLTMFRKLQAEGIPPDTVTFNTLMSWLCKGGFVYDACLLLDE 694

Query: 440 MILGGARPDAETYSLL 455
            I  G  P+  T+S+L
Sbjct: 695 GIEDGFVPNHRTWSIL 710



 Score = 71.6 bits (174), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 101/459 (22%), Positives = 187/459 (40%), Gaps = 64/459 (13%)

Query: 30  FHSIN-----RLRKLQLN-KRALEVMEWVIRERPYRPKELDYSYLL-------EF----- 71
           FH I      +L +L LN   ++E+  W   +  YR     Y  L+       EF     
Sbjct: 73  FHKITPFQLYKLLELPLNVSTSMELFSWTGSQNGYRHSFDVYQVLIGKLGANGEFKTIDR 132

Query: 72  ---TIKNHGISQGEKLFCCIPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMR-VLGHS 127
               +K+ GI   E LF  I +DY                G    +   M +MR V    
Sbjct: 133 LLIQMKDEGIVFKESLFISIMRDYDK-------------AGFPGQTTRLMLEMRNVYSCE 179

Query: 128 ISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKV 187
            ++  +N ++ +  S    K   N+   M + K+ P + TF ++MK     + I+  + +
Sbjct: 180 PTFKSYNVVLEILVSGNCHKVAANVFYDMLSRKIPPTLFTFGVVMKAFCAVNEIDSALSL 239

Query: 188 YSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTG--NNWSTLDVLIILY 245
             DM +    PN V Y  L   H++++   V E      E  + G   +  T + +I+  
Sbjct: 240 LRDMTKHGCVPNSVIYQTL--IHSLSKCNRVNEALQLLEEMFLMGCVPDAETFNDVIL-- 295

Query: 246 GYLAKGKDLERIWATVQEL------PNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVK 299
             L K   +      V  +      P+  +  Y++      +I +V  A++L+  +   +
Sbjct: 296 -GLCKFDRINEAAKMVNRMLIRGFAPDDITYGYLM--NGLCKIGRVDAAKDLFYRIPKPE 352

Query: 300 QLKATEQYNSVISVYCKNGFIDKASGLLKEMSMN-GCKPNAITYRHLALGCFKSNLVEEG 358
            +     +N++I  +  +G +D A  +L +M  + G  P+  TY  L  G +K  LV   
Sbjct: 353 IV----IFNTLIHGFVTHGRLDDAKAVLSDMVTSYGIVPDVCTYNSLIYGYWKEGLV--- 405

Query: 359 FKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFV 418
                L ++++   + +   P + +   +++ F + G +  A N+  E+        T  
Sbjct: 406 ----GLALEVLHDMRNKGCKPNVYSYTILVDGFCKLGKIDEAYNVLNEMSADGLKPNTVG 461

Query: 419 YNTLIKAYVKA-KINDP-NLLRRMILGGARPDAETYSLL 455
           +N LI A+ K  +I +   + R M   G +PD  T++ L
Sbjct: 462 FNCLISAFCKEHRIPEAVEIFREMPRKGCKPDVYTFNSL 500



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 75/357 (21%), Positives = 147/357 (41%), Gaps = 28/357 (7%)

Query: 111 IKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHI 170
           I  +L  ++ M   G   + +++  LI   S   R      +L +M      P   TF+ 
Sbjct: 233 IDSALSLLRDMTKHGCVPNSVIYQTLIHSLSKCNRVNEALQLLEEMFLMGCVPDAETFND 292

Query: 171 LMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHA-VARLYTVAETYVEALEKS 229
           ++        I    K+ + M      P++++Y  L      + R+    + +    +  
Sbjct: 293 VILGLCKFDRINEAAKMVNRMLIRGFAPDDITYGYLMNGLCKIGRVDAAKDLFYRIPKPE 352

Query: 230 MTGNNWSTLDVLIILYGYLAKGKDLERIWATVQEL-------PNVRSKSYVLAIEAFGRI 282
           +   N        +++G++  G+ L+   A + ++       P+V   +Y   I  + + 
Sbjct: 353 IVIFN-------TLIHGFVTHGR-LDDAKAVLSDMVTSYGIVPDV--CTYNSLIYGYWKE 402

Query: 283 AQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITY 342
             V  A E+  +M++         Y  ++  +CK G ID+A  +L EMS +G KPN + +
Sbjct: 403 GLVGLALEVLHDMRNKGCKPNVYSYTILVDGFCKLGKIDEAYNVLNEMSADGLKPNTVGF 462

Query: 343 RHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAEN 402
             L     K + + E        +++      +   P + T  S+I    E  ++ +A  
Sbjct: 463 NCLISAFCKEHRIPE-------AVEIFREMPRKGCKPDVYTFNSLISGLCEVDEIKHALW 515

Query: 403 LFEELKKANYTKYTFVYNTLIKAYV-KAKINDP-NLLRRMILGGARPDAETY-SLLK 456
           L  ++        T  YNTLI A++ + +I +   L+  M+  G+  D  TY SL+K
Sbjct: 516 LLRDMISEGVVANTVTYNTLINAFLRRGEIKEARKLVNEMVFQGSPLDEITYNSLIK 572



 Score = 39.3 bits (90), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 64/308 (20%), Positives = 125/308 (40%), Gaps = 12/308 (3%)

Query: 45  ALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQGEKLFCCIPKD--YQNELLYNNLV 102
           ALEV+   +R +  +P    Y+ L++   K   I +   +   +  D    N + +N L+
Sbjct: 408 ALEVLH-DMRNKGCKPNVYSYTILVDGFCKLGKIDEAYNVLNEMSADGLKPNTVGFNCLI 466

Query: 103 IACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVA 162
            A   +  I  ++E  ++M   G       FN LI         K    +LR M ++ V 
Sbjct: 467 SAFCKEHRIPEAVEIFREMPRKGCKPDVYTFNSLISGLCEVDEIKHALWLLRDMISEGVV 526

Query: 163 PHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETY 222
            +  T++ L+        I+   K+ ++M       +E++Y  L      A     A + 
Sbjct: 527 ANTVTYNTLINAFLRRGEIKEARKLVNEMVFQGSPLDEITYNSLIKGLCRAGEVDKARSL 586

Query: 223 VEALEKSMTGNNWSTLDVLIILYGYLAKGK-----DLERIWATVQELPNVRSKSYVLAIE 277
            E + +   G+  S +   I++ G    G      + ++        P++ + + +  I 
Sbjct: 587 FEKMLRD--GHAPSNISCNILINGLCRSGMVEEAVEFQKEMVLRGSTPDIVTFNSL--IN 642

Query: 278 AFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKP 337
              R  ++     ++ ++Q+      T  +N+++S  CK GF+  A  LL E   +G  P
Sbjct: 643 GLCRAGRIEDGLTMFRKLQAEGIPPDTVTFNTLMSWLCKGGFVYDACLLLDEGIEDGFVP 702

Query: 338 NAITYRHL 345
           N  T+  L
Sbjct: 703 NHRTWSIL 710



 Score = 38.9 bits (89), Expect = 6.2,   Method: Compositional matrix adjust.
 Identities = 32/139 (23%), Positives = 67/139 (48%), Gaps = 4/139 (2%)

Query: 36  LRKLQLNKRALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQGEKLFCCIPKDYQ-- 93
           LR+ ++ +    V E V +  P    E+ Y+ L++   +   + +   LF  + +D    
Sbjct: 540 LRRGEIKEARKLVNEMVFQGSPL--DEITYNSLIKGLCRAGEVDKARSLFEKMLRDGHAP 597

Query: 94  NELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNIL 153
           + +  N L+      G+++ ++E+ K+M + G +   + FN LI      GR +    + 
Sbjct: 598 SNISCNILINGLCRSGMVEEAVEFQKEMVLRGSTPDIVTFNSLINGLCRAGRIEDGLTMF 657

Query: 154 RQMKADKVAPHVSTFHILM 172
           R+++A+ + P   TF+ LM
Sbjct: 658 RKLQAEGIPPDTVTFNTLM 676


>gi|255545872|ref|XP_002513996.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223547082|gb|EEF48579.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 496

 Score = 82.8 bits (203), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 101/464 (21%), Positives = 202/464 (43%), Gaps = 29/464 (6%)

Query: 7   GEPVGSAFQSWMREGFPVHRGEIFHSINRLRKLQLNKRALEVMEWVIRERPYRPKELDYS 66
           G  + S  Q W+  G  V   ++ +    L K +  K ALE+  W+  ++ +R    DY+
Sbjct: 42  GLNITSILQKWIDNGHKVTVSQLRYINGLLVKSKRYKHALEIFTWMETQKNFRMSVSDYA 101

Query: 67  YLLEFTIKNHGISQGEKLFCCIPKDYQNE------LLYNNLVIACLDKGVIKLSLEYMKK 120
             LE  IK +GI + E+ F  IP D          LL+  + +    K V+K     M K
Sbjct: 102 LRLELIIKVNGIEEAEEYFNFIPHDSVTRKAASFALLHGYVKV----KDVVKAE-ALMMK 156

Query: 121 MRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHN 180
           +  LG  ++   FN ++ L  +  + + +  ++ QMK +K+A ++ ++++ M        
Sbjct: 157 LYNLGLIVNCYPFNEMMKLYMATSQYEKVALVIDQMKRNKIALNLLSYNLWMSSYGEVSK 216

Query: 181 IEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEAL------EKSMTGNN 234
           +  +  VY +M     +  EV +  LAT   +A +YT A    +AL      EK ++ ++
Sbjct: 217 VVKVELVYKEMVND--DNVEVGWSTLAT---LANIYTKAGIVDKALLALKNAEKILSTSH 271

Query: 235 WSTLDVLIILYGYLAKGKDLERIWATVQELPN-VRSKSYVLAIEAFGRIAQVSRAEELWL 293
                 L+  Y  L   + ++R+W   + +   +   +Y+  +    ++  +  AE+++ 
Sbjct: 272 LLGYFFLMTQYSSLKNKEGVQRLWEACKGVNGRITCANYMCVLSCLVKVGDLLEAEKVFR 331

Query: 294 EMQSVKQLKATEQYNSVISVYCKNGFIDKASGL-LKEMSMNGCKPNAITYRHLALGCFKS 352
           + +   +       N ++  Y + G ++KA  L L  +   GC PN  T   L  G  KS
Sbjct: 332 DWELNCRKYDIRVSNVLLGAYVRKGLMNKAESLHLHTLDRGGC-PNYKTLEILMEGWVKS 390

Query: 353 NLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANY 412
             +++   A+   + ++     R S       +SI E      +  +A +  + +     
Sbjct: 391 QKMDKAIDAMTQAISMLEHCHWRPSHG---IIMSIAEHLERNRNFEDANHFIQVIHHLGV 447

Query: 413 TKYTFVYNTLIKAYVKAKINDPNLLRRMILGGARPDAETYSLLK 456
                +Y  L++ ++ A+    ++L+ M       D ET +L++
Sbjct: 448 ASLP-LYKVLLRMHLHAQRAAFDILKMMEKDKIELDDETSALVQ 490


>gi|297832604|ref|XP_002884184.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297330024|gb|EFH60443.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 829

 Score = 82.8 bits (203), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 89/426 (20%), Positives = 190/426 (44%), Gaps = 24/426 (5%)

Query: 43  KRALEVMEWVIRERPYRPKELDYSYLLEFTIKNHG----ISQGEKLFCCIP-KDYQNEL- 96
           +RA+ + EW++        +LD+ +++E  ++  G     S   KL   IP +DY  ++ 
Sbjct: 160 ERAVFLFEWLVLSSNSGALKLDH-HVIEILVRILGRESQYSVAAKLLDKIPLQDYMLDVR 218

Query: 97  LYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRR-KTIPNILRQ 155
            Y  ++ A    G  + ++   ++M+ +G S + + +N ++ +    GR  + I  +L +
Sbjct: 219 AYTTILHAYSRTGKYEKAINLFERMKEMGPSPTLVTYNVILDVFGKMGRSWRKILGVLEE 278

Query: 156 MKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARL 215
           M++  +     T   ++   A +  +      ++++K    EP  V+Y  L      A +
Sbjct: 279 MRSKGLKFDEFTCSTVLSACAREGLLREAKDFFAELKSCGYEPGTVTYNALLQVFGKAGV 338

Query: 216 YTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQE---LPNVRSKSY 272
           YT A + ++ +E++    +  T + L+  Y      K+   +   + +   +PN  + +Y
Sbjct: 339 YTEALSVLKEMEENNCPADSVTYNELVAAYARAGFSKEAAVVIEMMTQKGVMPN--AITY 396

Query: 273 VLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSM 332
              I+A+G+  +   A +L+  M+    +  T  YN+V+S+  K    ++   +L +M  
Sbjct: 397 TTVIDAYGKAGKEDEALKLFYSMKEAGCVPNTCTYNAVLSMLGKKSRSNEMIKMLCDMKS 456

Query: 333 NGCKPNAITYRHLALGCFKSNLVEEGFKALE-LGMKLITTKKVRSSTPWLETTLSIIEIF 391
           NGC PN  T+  +   C        G K ++    ++    K     P  +T  ++I  +
Sbjct: 457 NGCFPNRATWNTILALC--------GNKGMDKFVNRVFREMKSCGFEPDRDTFNTLISAY 508

Query: 392 AEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKI--NDPNLLRRMILGGARPDA 449
              G   +A  ++ E+ +A +      YN L+ A  +     +  N++  M   G +P  
Sbjct: 509 GRCGSEVDASKMYGEMTRAGFNACVTTYNALLNALARKGDWRSGENVISDMKSKGFKPTE 568

Query: 450 ETYSLL 455
            +YSL+
Sbjct: 569 TSYSLM 574



 Score = 68.9 bits (167), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 79/387 (20%), Positives = 157/387 (40%), Gaps = 20/387 (5%)

Query: 51  WVIRERPYRPKELDYSYLLEFTIKNHGISQGEKLFCCIPKD--YQNELLYNNLVIACLDK 108
           + ++E    P    Y+ +L    K    ++  K+ C +  +  + N   +N ++  C +K
Sbjct: 417 YSMKEAGCVPNTCTYNAVLSMLGKKSRSNEMIKMLCDMKSNGCFPNRATWNTILALCGNK 476

Query: 109 GVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTF 168
           G+ K      ++M+  G       FN LI      G       +  +M        V+T+
Sbjct: 477 GMDKFVNRVFREMKSCGFEPDRDTFNTLISAYGRCGSEVDASKMYGEMTRAGFNACVTTY 536

Query: 169 HILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEK 228
           + L+   A   +      V SDMK    +P E SY ++   +A    Y   E   E + +
Sbjct: 537 NALLNALARKGDWRSGENVISDMKSKGFKPTETSYSLMLQCYAKGGNYLGIERIEEGINE 596

Query: 229 SMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQEL---PNVRSKSYVLAIEAFGRIAQV 285
                +W  L  L++           ER +   ++    P++   + +L+I  F R    
Sbjct: 597 GQIFPSWMLLRTLLLANFKCRALAGSERAFTLFKKHGYKPDMVIFNSMLSI--FTRNNMY 654

Query: 286 SRAEELWLEMQSVKQLKATEQ---YNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITY 342
            +AE +   +QS+ +         YNS++ +Y + G   KA  +LK +  +  KP+ ++Y
Sbjct: 655 DQAEGI---LQSIHEDGLNPDLVTYNSLMDMYVRRGECWKAEEILKTLEKSQLKPDLVSY 711

Query: 343 RHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAEN 402
             +  G  +  L++E  + L      +T + +R   P + T  + +  +   G  G  E+
Sbjct: 712 NTVIKGFCRKGLMQEAVRML----SEMTERGIR---PCIFTYNTFVSGYTAMGMYGEIED 764

Query: 403 LFEELKKANYTKYTFVYNTLIKAYVKA 429
           + E + K +       +  ++  Y +A
Sbjct: 765 VIECMAKNDCRPNELTFKMVVDGYCRA 791



 Score = 38.9 bits (89), Expect = 6.2,   Method: Compositional matrix adjust.
 Identities = 46/229 (20%), Positives = 97/229 (42%), Gaps = 12/229 (5%)

Query: 1   IERLPRGEPVGSAFQSWMREGFPVHRGEIFHSINRLRKLQLNKRALEVMEWVIRERPYRP 60
           IER+  G   G  F SWM     + R  +  +  + R L  ++RA      + ++  Y+P
Sbjct: 587 IERIEEGINEGQIFPSWM-----LLRTLLLANF-KCRALAGSERAFT----LFKKHGYKP 636

Query: 61  KELDYSYLLEFTIKNHGISQGEKLFCCIPKDYQNELL--YNNLVIACLDKGVIKLSLEYM 118
             + ++ +L    +N+   Q E +   I +D  N  L  YN+L+   + +G    + E +
Sbjct: 637 DMVIFNSMLSIFTRNNMYDQAEGILQSIHEDGLNPDLVTYNSLMDMYVRRGECWKAEEIL 696

Query: 119 KKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEAND 178
           K +         + +N +I      G  +    +L +M    + P + T++  +      
Sbjct: 697 KTLEKSQLKPDLVSYNTVIKGFCRKGLMQEAVRMLSEMTERGIRPCIFTYNTFVSGYTAM 756

Query: 179 HNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALE 227
                +  V   M +++  PNE+++ ++   +  A  Y+ A  +V  ++
Sbjct: 757 GMYGEIEDVIECMAKNDCRPNELTFKMVVDGYCRAGKYSEAMDFVSKIK 805


>gi|357138821|ref|XP_003570985.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g35130-like [Brachypodium distachyon]
          Length = 613

 Score = 82.8 bits (203), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 66/289 (22%), Positives = 123/289 (42%), Gaps = 10/289 (3%)

Query: 160 KVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVA 219
           +  P   T+ +L++   N  ++     V S+M+   + P+   Y         AR    A
Sbjct: 217 QCVPTEDTYALLLRAYCNARSLHRAEGVISEMQEHGIPPSATVYNAYLDGLLKARCTVKA 276

Query: 220 ETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELP-NVRSKSYVLAIEA 278
               + ++K     N  T  ++I +YG   +     +I+  +Q +       +Y   + A
Sbjct: 277 VEVYQRMKKERCRTNTETYTLMINVYGKSKQPMSAMKIFNEMQSIGCKANICTYTALVNA 336

Query: 279 FGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPN 338
           F R     +AEE++ +MQ          YN+++  Y + GF   AS +   M   GC+P+
Sbjct: 337 FAREGLCEKAEEVFEQMQQAGHEPDVYAYNALMEAYSRAGFPQGASEIFSLMQHMGCEPD 396

Query: 339 AITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVG 398
             +Y  L     ++ L  E     E       + K +   P +++ + ++   A  G+VG
Sbjct: 397 RASYNILVDAYGRAGLHREAEATFE-------SLKQQGMAPTMKSHMLLLSAHARSGNVG 449

Query: 399 NAENLFEELKKANYTKYTFVYNTLIKAYVKA-KIND-PNLLRRMILGGA 445
             E +  +L K+     TF  N ++ AY +A +++D   LL  M L G+
Sbjct: 450 RCEQVMAQLHKSGLRPDTFALNAMLHAYARAGRLDDMERLLAAMDLAGS 498



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 48/217 (22%), Positives = 91/217 (41%), Gaps = 36/217 (16%)

Query: 272 YVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMS 331
           Y L I+A+GR  Q+++AE ++  +   + +   + Y  ++  YC    + +A G++ EM 
Sbjct: 190 YNLLIDAYGRKRQLNKAESIYAAVLEAQCVPTEDTYALLLRAYCNARSLHRAEGVISEMQ 249

Query: 332 MNGCKPNAITYRHLALGCFKSNLVEEGFKALEL--------------------------- 364
            +G  P+A  Y     G  K+       KA+E+                           
Sbjct: 250 EHGIPPSATVYNAYLDGLLKARCT---VKAVEVYQRMKKERCRTNTETYTLMINVYGKSK 306

Query: 365 ----GMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYN 420
                MK+    +       + T  +++  FA +G    AE +FE++++A +    + YN
Sbjct: 307 QPMSAMKIFNEMQSIGCKANICTYTALVNAFAREGLCEKAEEVFEQMQQAGHEPDVYAYN 366

Query: 421 TLIKAYVKAKI--NDPNLLRRMILGGARPDAETYSLL 455
            L++AY +A        +   M   G  PD  +Y++L
Sbjct: 367 ALMEAYSRAGFPQGASEIFSLMQHMGCEPDRASYNIL 403



 Score = 63.2 bits (152), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 80/445 (17%), Positives = 182/445 (40%), Gaps = 33/445 (7%)

Query: 33  INRLRKLQLNKR---ALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQGEKLFC--- 86
           +N   +L+LN++    + V EW++    +RP  + Y+ L++   +   +++ E ++    
Sbjct: 155 LNVAVQLRLNRQWDPIISVCEWIVYRSSFRPDIICYNLLIDAYGRKRQLNKAESIYAAVL 214

Query: 87  ---CIPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSP 143
              C+P     E  Y  L+ A  +   +  +   + +M+  G   S  V+N    L+   
Sbjct: 215 EAQCVP----TEDTYALLLRAYCNARSLHRAEGVISEMQEHGIPPSATVYN--AYLDGLL 268

Query: 144 GRRKTIP--NILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEV 201
             R T+    + ++MK ++   +  T+ +++ +          MK++++M+    + N  
Sbjct: 269 KARCTVKAVEVYQRMKKERCRTNTETYTLMINVYGKSKQPMSAMKIFNEMQSIGCKANIC 328

Query: 202 SYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATV 261
           +Y  L  A A   L   AE   E ++++    +    + L+  Y      +    I++ +
Sbjct: 329 TYTALVNAFAREGLCEKAEEVFEQMQQAGHEPDVYAYNALMEAYSRAGFPQGASEIFSLM 388

Query: 262 QELPNVRSK-SYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFI 320
           Q +     + SY + ++A+GR      AE  +  ++        + +  ++S + ++G +
Sbjct: 389 QHMGCEPDRASYNILVDAYGRAGLHREAEATFESLKQQGMAPTMKSHMLLLSAHARSGNV 448

Query: 321 DKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPW 380
            +   ++ ++  +G +P+      +     ++  +++  + L   M L  +  V S    
Sbjct: 449 GRCEQVMAQLHKSGLRPDTFALNAMLHAYARAGRLDD-MERLLAAMDLAGSADVGSHN-- 505

Query: 381 LETTLSIIEIFAEKGDVGNAENLFEEL-----KKANYTKYTFVYNTLIKAYVKAKINDPN 435
                  +  +A  G +G  E  FE +     KK         + + +  Y + K     
Sbjct: 506 -----VAVNAYARAGYLGRMEAAFEGIRRRKGKKGGIDADVVSWTSRMGGYARKKEYGKC 560

Query: 436 L--LRRMILGGARPDAETYSLLKLA 458
           L     M+  G  PDA T  +L  A
Sbjct: 561 LEIFEEMVDAGCYPDAGTAKVLMAA 585



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 60/273 (21%), Positives = 113/273 (41%), Gaps = 13/273 (4%)

Query: 94  NELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNIL 153
           N   Y  LV A   +G+ + + E  ++M+  GH      +N L+   S  G  +    I 
Sbjct: 326 NICTYTALVNAFAREGLCEKAEEVFEQMQQAGHEPDVYAYNALMEAYSRAGFPQGASEIF 385

Query: 154 RQMKADKVAPHVSTFHILMKIEANDHNIEGLMK----VYSDMKRSEVEPNEVSYCILATA 209
             M+     P  ++++IL+    + +   GL +     +  +K+  + P   S+ +L +A
Sbjct: 386 SLMQHMGCEPDRASYNILV----DAYGRAGLHREAEATFESLKQQGMAPTMKSHMLLLSA 441

Query: 210 HAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRS 269
           HA +      E  +  L KS    +   L+ ++  Y    +  D+ER+ A +    +   
Sbjct: 442 HARSGNVGRCEQVMAQLHKSGLRPDTFALNAMLHAYARAGRLDDMERLLAAMDLAGSADV 501

Query: 270 KSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKA-----TEQYNSVISVYCKNGFIDKAS 324
            S+ +A+ A+ R   + R E  +  ++  K  K         + S +  Y +     K  
Sbjct: 502 GSHNVAVNAYARAGYLGRMEAAFEGIRRRKGKKGGIDADVVSWTSRMGGYARKKEYGKCL 561

Query: 325 GLLKEMSMNGCKPNAITYRHLALGCFKSNLVEE 357
            + +EM   GC P+A T + L   C     VE+
Sbjct: 562 EIFEEMVDAGCYPDAGTAKVLMAACSDERQVEQ 594


>gi|326493766|dbj|BAJ85345.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 671

 Score = 82.8 bits (203), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 91/417 (21%), Positives = 170/417 (40%), Gaps = 49/417 (11%)

Query: 64  DYSYLLEFTIKNHGISQGEKLFCCIPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMRV 123
           D   L+   ++NH          C P    NE+ +   + A    G++  +++ + +M  
Sbjct: 230 DAEALMAEMVRNH----------CPP----NEVTFATQIRAFCQNGLLDRAVQLLDRMPQ 275

Query: 124 LGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEG 183
            G +   ++++ L+   S  GR      +L  M      P+   ++  +K        E 
Sbjct: 276 YGCTPDVVIYSTLVNGFSEQGRVDDAIELLNGMLCK---PNTICYNAALKGLCIAQRWED 332

Query: 184 LMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLII 243
           + ++  +M R +  PNE ++ +L +      L   A   +E + K     +    + LI 
Sbjct: 333 VGQLIVEMVRKDCLPNEATFSMLTSCLCQNGLVDCAMEVLEQMHKYGCRPDAVIYNTLIY 392

Query: 244 LYGYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKA 303
            +    +  D  ++  ++   P+V   S+  A++   R  +   AEEL ++M        
Sbjct: 393 SFSEQGRVDDALKLLNSMPCSPDV--ISFNAALKGLCRAERWDDAEELIVQMLREDCPLI 450

Query: 304 TEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEE------ 357
              +N +I   C+NG ++ A  + ++M   GC P+ +TY  L  G  +  LVE       
Sbjct: 451 EMTFNILIDSLCQNGRVNNAIEVFEQMPKYGCTPDIVTYSSLINGLSEQGLVESAIELFQ 510

Query: 358 ---------GFKALELGM---------KLITTKKVRSSTPWLETTLSI-IEIFAEKGDVG 398
                    G+ A+  G+           + +   R   P  E T +I I    +KG V 
Sbjct: 511 SMPCKPDIFGYNAVLKGLCRAARWEDAGELISNMARKDCPPNEITFNILINSLCQKGLVD 570

Query: 399 NAENLFEELKKANYTKYTFVYNTLIKAYV-KAKINDP-NLLRRMILGGARPDAETYS 453
            A  +FE++ K   T   F YN LI  +  + +++D   LL  M     +PDA +Y+
Sbjct: 571 RAIEVFEQMPKYGSTPDIFTYNALINGFSEQGRLDDARRLLSTM---SCKPDAVSYN 624



 Score = 62.4 bits (150), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 64/309 (20%), Positives = 124/309 (40%), Gaps = 33/309 (10%)

Query: 145 RRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYC 204
           R   + + L  + +  VAP   T++ ++         E    + ++M R+   PNEV++ 
Sbjct: 192 RSGRLADALALIASMPVAPDTYTYNTVLMGLCGARQWEDAEALMAEMVRNHCPPNEVTFA 251

Query: 205 ILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLI---ILYGYLAKGKDLERIWATV 261
               A     L   A   ++ + +        T DV+I   ++ G+  +G+  + I    
Sbjct: 252 TQIRAFCQNGLLDRAVQLLDRMPQY-----GCTPDVVIYSTLVNGFSEQGRVDDAIELLN 306

Query: 262 QELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFID 321
             L    +  Y  A++      +     +L +EM     L     ++ + S  C+NG +D
Sbjct: 307 GMLCKPNTICYNAALKGLCIAQRWEDVGQLIVEMVRKDCLPNEATFSMLTSCLCQNGLVD 366

Query: 322 KASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFK---ALELGMKLIT-------- 370
            A  +L++M   GC+P+A+ Y  L     +   V++  K   ++     +I+        
Sbjct: 367 CAMEVLEQMHKYGCRPDAVIYNTLIYSFSEQGRVDDALKLLNSMPCSPDVISFNAALKGL 426

Query: 371 -------------TKKVRSSTPWLETTLSI-IEIFAEKGDVGNAENLFEELKKANYTKYT 416
                         + +R   P +E T +I I+   + G V NA  +FE++ K   T   
Sbjct: 427 CRAERWDDAEELIVQMLREDCPLIEMTFNILIDSLCQNGRVNNAIEVFEQMPKYGCTPDI 486

Query: 417 FVYNTLIKA 425
             Y++LI  
Sbjct: 487 VTYSSLING 495


>gi|302784232|ref|XP_002973888.1| hypothetical protein SELMODRAFT_100264 [Selaginella moellendorffii]
 gi|300158220|gb|EFJ24843.1| hypothetical protein SELMODRAFT_100264 [Selaginella moellendorffii]
          Length = 399

 Score = 82.8 bits (203), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 80/332 (24%), Positives = 134/332 (40%), Gaps = 52/332 (15%)

Query: 129 SYLVFNRLIILNSSPGRRKTIPNILRQMKAD-KVAPHVSTFHILMKIEANDHNIEGLMKV 187
           +Y V  R   L    G  +   ++LR+M+    +AP  S ++  +        +   M+V
Sbjct: 20  TYFVLVRAHCL---AGELQAAMDLLREMEQQPGMAPTPSMYNFFVHALCKSGKVPEAMEV 76

Query: 188 YSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGY 247
             +MK    +P+ V++  L      A     A+  ++ +E+S    N  T + LI     
Sbjct: 77  VKNMKDGACKPDVVTFNTLIAGLCKAGRLDEAQQVLDEMERSGFAANLVTYNTLI----- 131

Query: 248 LAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQY 307
                                             ++   R+ E  L MQ +     T+ Y
Sbjct: 132 --------------------------------NGLSSAGRSGEAVLVMQGMTTTPDTQTY 159

Query: 308 NSVISVYCKNGFIDKASGLLKEMSMN-GCKPNAITYRHLALG-CFKSNLVEEGFKALELG 365
           N++I  +CK+G ID+A G L+EM    GC P+  TY  L  G C  SNL     KA EL 
Sbjct: 160 NAIIHGFCKSGEIDRAYGFLEEMKQRAGCSPDTFTYSILINGLCKSSNLR----KADELL 215

Query: 366 MKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKA 425
            ++I  K   +S     T   +++ + +  D+  A  L   + +         Y+T+I  
Sbjct: 216 QEMIGRKDCCASVVAFNT---LVDGYCKAQDLDRARELLSSMLEHGCAPDVVTYSTIIDG 272

Query: 426 YVKAKINDPN--LLRRMILGGARPDAETYSLL 455
             +    D    LL +M+  G +PD  TY++L
Sbjct: 273 LCRCGDVDKGFALLEKMVSRGCKPDVVTYTVL 304



 Score = 75.5 bits (184), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 71/331 (21%), Positives = 148/331 (44%), Gaps = 25/331 (7%)

Query: 105 CLDKGVIKLSLEYMKKM-RVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAP 163
           CL  G ++ +++ +++M +  G + +  ++N  +      G+      +++ MK     P
Sbjct: 29  CL-AGELQAAMDLLREMEQQPGMAPTPSMYNFFVHALCKSGKVPEAMEVVKNMKDGACKP 87

Query: 164 HVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYV 223
            V TF+ L+        ++   +V  +M+RS    N V+Y  L    + A     A   +
Sbjct: 88  DVVTFNTLIAGLCKAGRLDEAQQVLDEMERSGFAANLVTYNTLINGLSSAGRSGEAVLVM 147

Query: 224 EALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSKS-----YVLAIEA 278
           + +  +     ++      I++G+   G +++R +  ++E+      S     Y + I  
Sbjct: 148 QGMTTTPDTQTYNA-----IIHGFCKSG-EIDRAYGFLEEMKQRAGCSPDTFTYSILING 201

Query: 279 FGRIAQVSRAEELWLEMQSVKQLKATE-QYNSVISVYCKNGFIDKASGLLKEMSMNGCKP 337
             + + + +A+EL  EM   K   A+   +N+++  YCK   +D+A  LL  M  +GC P
Sbjct: 202 LCKSSNLRKADELLQEMIGRKDCCASVVAFNTLVDGYCKAQDLDRARELLSSMLEHGCAP 261

Query: 338 NAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDV 397
           + +TY  +  G  +   V++GF  LE   K+++    R   P + T   ++    + G +
Sbjct: 262 DVVTYSTIIDGLCRCGDVDKGFALLE---KMVS----RGCKPDVVTYTVLVTGLCKAGKM 314

Query: 398 GNA----ENLFEELKKANYTKYTFVYNTLIK 424
             A    + + E+    N   Y+ V++ L K
Sbjct: 315 VEACRLVKRMLEDGCTPNAVTYSLVFDGLCK 345


>gi|20219038|gb|AAM15782.1|AC104428_3 Putative indole-3-acetate beta-glucosyltransferase [Oryza sativa
           Japonica Group]
 gi|108706351|gb|ABF94146.1| Rf1 protein, mitochondrial precursor, putative [Oryza sativa
           Japonica Group]
 gi|125585039|gb|EAZ25703.1| hypothetical protein OsJ_09536 [Oryza sativa Japonica Group]
          Length = 648

 Score = 82.8 bits (203), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 83/350 (23%), Positives = 147/350 (42%), Gaps = 16/350 (4%)

Query: 109 GVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTF 168
           G I+ +L+  K+MR  G     + F+ LI L +  G+       LR+M+   + P    +
Sbjct: 275 GEIEEALKIYKEMRHRGIKPDLVSFSCLIGLFARRGKMDHAMAYLREMRCFGLVPDGVIY 334

Query: 169 HILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEK 228
            +++        +   ++V  +M      P+ V+Y  L       R    AE  +  + +
Sbjct: 335 TMVIGGFCRAGLMSDALRVRDEMVGCGCLPDVVTYNTLLNGLCKERRLLDAEGLLNEMRE 394

Query: 229 SMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSK----SYVLAIEAFGRIAQ 284
                +  T   LI  +GY  +GK L++       + N R +    +Y   I+   R   
Sbjct: 395 RGVPPDLCTFTTLI--HGYCIEGK-LDKALQLFDTMLNQRLRPDIVTYNTLIDGMCRQGD 451

Query: 285 VSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRH 344
           + +A +LW +M S +       Y+ +I  +C+ G ++ A G L EM   G  PN +TY  
Sbjct: 452 LDKANDLWDDMHSREIFPNHVTYSILIDSHCEKGQVEDAFGFLDEMINKGILPNIMTYNS 511

Query: 345 LALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLF 404
           +  G  +S  V +G K L+  M       V   +P L T  ++I  + ++  + +A  L 
Sbjct: 512 IIKGYCRSGNVSKGQKFLQKMM-------VNKVSPDLITYNTLIHGYIKEDKMHDAFKLL 564

Query: 405 EELKKANYTKYTFVYNTLIKAY-VKAKINDPN-LLRRMILGGARPDAETY 452
             ++K         YN LI  + V   + +   +  +M   G  PD  TY
Sbjct: 565 NMMEKEKVQPDVVTYNMLINGFSVHGNVQEAGWIFEKMCAKGIEPDRYTY 614



 Score = 75.1 bits (183), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 71/325 (21%), Positives = 140/325 (43%), Gaps = 12/325 (3%)

Query: 108 KGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVST 167
           +G +  ++ Y+++MR  G     +++  +I      G       +  +M      P V T
Sbjct: 309 RGKMDHAMAYLREMRCFGLVPDGVIYTMVIGGFCRAGLMSDALRVRDEMVGCGCLPDVVT 368

Query: 168 FHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAV-ARLYTVAETYVEAL 226
           ++ L+     +  +     + ++M+   V P+  ++  L   + +  +L    + +   L
Sbjct: 369 YNTLLNGLCKERRLLDAEGLLNEMRERGVPPDLCTFTTLIHGYCIEGKLDKALQLFDTML 428

Query: 227 EKSMTGN--NWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQ 284
            + +  +   ++TL   +   G L K  DL     + +  PN    +Y + I++     Q
Sbjct: 429 NQRLRPDIVTYNTLIDGMCRQGDLDKANDLWDDMHSREIFPN--HVTYSILIDSHCEKGQ 486

Query: 285 VSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRH 344
           V  A     EM +   L     YNS+I  YC++G + K    L++M +N   P+ ITY  
Sbjct: 487 VEDAFGFLDEMINKGILPNIMTYNSIIKGYCRSGNVSKGQKFLQKMMVNKVSPDLITYNT 546

Query: 345 LALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLF 404
           L  G  K + + + FK L     ++  +KV+   P + T   +I  F+  G+V  A  +F
Sbjct: 547 LIHGYIKEDKMHDAFKLL----NMMEKEKVQ---PDVVTYNMLINGFSVHGNVQEAGWIF 599

Query: 405 EELKKANYTKYTFVYNTLIKAYVKA 429
           E++         + Y ++I  +V A
Sbjct: 600 EKMCAKGIEPDRYTYMSMINGHVTA 624



 Score = 58.9 bits (141), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 55/230 (23%), Positives = 98/230 (42%), Gaps = 20/230 (8%)

Query: 234 NWSTLDVLIILYGYLAKGKDLERIWATVQEL------PNVRSKSYVLAIEAFGRIAQVSR 287
           N  TL++++  Y    K  + +++ A + E+      P+V + +  + ++A  R      
Sbjct: 155 NTYTLNIMVHNY---CKALEFDKVDAVISEMEKRCVFPDVVTHN--VMVDARFRAGDAEA 209

Query: 288 AEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLAL 347
           A  L   M S         YNSV+   C++G  DKA  + KEM   G  P+  ++  L  
Sbjct: 210 AMALVDSMVSKGLKPGIVTYNSVLKGLCRSGMWDKAWEVFKEMDDFGVAPDVRSFTILIG 269

Query: 348 GCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEEL 407
           G  +   +EE        +K+    + R   P L +   +I +FA +G + +A     E+
Sbjct: 270 GFCRVGEIEE-------ALKIYKEMRHRGIKPDLVSFSCLIGLFARRGKMDHAMAYLREM 322

Query: 408 KKANYTKYTFVYNTLIKAYVKAKINDPNLLRR--MILGGARPDAETYSLL 455
           +         +Y  +I  + +A +    L  R  M+  G  PD  TY+ L
Sbjct: 323 RCFGLVPDGVIYTMVIGGFCRAGLMSDALRVRDEMVGCGCLPDVVTYNTL 372



 Score = 47.4 bits (111), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 55/277 (19%), Positives = 113/277 (40%), Gaps = 9/277 (3%)

Query: 87  CIPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRR 146
           C+P       L N L   C ++ ++      + +MR  G       F  LI      G+ 
Sbjct: 362 CLPDVVTYNTLLNGL---CKERRLLDAE-GLLNEMRERGVPPDLCTFTTLIHGYCIEGKL 417

Query: 147 KTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCIL 206
                +   M   ++ P + T++ L+       +++    ++ DM   E+ PN V+Y IL
Sbjct: 418 DKALQLFDTMLNQRLRPDIVTYNTLIDGMCRQGDLDKANDLWDDMHSREIFPNHVTYSIL 477

Query: 207 ATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILY---GYLAKGKDLERIWATVQE 263
             +H        A  +++ +       N  T + +I  Y   G ++KG+   +     + 
Sbjct: 478 IDSHCEKGQVEDAFGFLDEMINKGILPNIMTYNSIIKGYCRSGNVSKGQKFLQKMMVNKV 537

Query: 264 LPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKA 323
            P++   +Y   I  + +  ++  A +L   M+  K       YN +I+ +  +G + +A
Sbjct: 538 SPDL--ITYNTLIHGYIKEDKMHDAFKLLNMMEKEKVQPDVVTYNMLINGFSVHGNVQEA 595

Query: 324 SGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFK 360
             + ++M   G +P+  TY  +  G   +   +E F+
Sbjct: 596 GWIFEKMCAKGIEPDRYTYMSMINGHVTAGNSKEAFQ 632



 Score = 43.5 bits (101), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 33/171 (19%), Positives = 85/171 (49%), Gaps = 3/171 (1%)

Query: 44  RALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQGEKLFCCIPKD--YQNELLYNNL 101
           +AL++ + ++ +R  RP  + Y+ L++   +   + +   L+  +     + N + Y+ L
Sbjct: 419 KALQLFDTMLNQR-LRPDIVTYNTLIDGMCRQGDLDKANDLWDDMHSREIFPNHVTYSIL 477

Query: 102 VIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKV 161
           + +  +KG ++ +  ++ +M   G   + + +N +I      G        L++M  +KV
Sbjct: 478 IDSHCEKGQVEDAFGFLDEMINKGILPNIMTYNSIIKGYCRSGNVSKGQKFLQKMMVNKV 537

Query: 162 APHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAV 212
           +P + T++ L+     +  +    K+ + M++ +V+P+ V+Y +L    +V
Sbjct: 538 SPDLITYNTLIHGYIKEDKMHDAFKLLNMMEKEKVQPDVVTYNMLINGFSV 588


>gi|8493580|gb|AAF75803.1|AC011000_6 Contains weak similarity to leaf protein from Ipomea nil gb|D85101
           and contains a RepB PF|01051 protein and multiple PPR
           PF|01535 repeats [Arabidopsis thaliana]
          Length = 613

 Score = 82.8 bits (203), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 100/433 (23%), Positives = 183/433 (42%), Gaps = 37/433 (8%)

Query: 58  YRPKELDYSYLLEFTIKNHGISQGEKLFC-CIPKDYQNELL-YNNLVIACLDKGVIKLSL 115
           Y+P  + ++ L+     ++  S+   L    + +  Q +L  Y  +V     +G I L+L
Sbjct: 165 YQPNTVTFNTLIHGLFLHNKASEAVALIDRMVARGCQPDLFTYGTVVNGLCKRGDIDLAL 224

Query: 116 EYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIE 175
             +KKM         +++  +I    +        N+  +M    + P+V T++ L++  
Sbjct: 225 SLLKKMEKGKIEADVVIYTTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCL 284

Query: 176 ANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAV-ARLYTVAETYVEALEKSMTGN- 233
            N        ++ SDM   ++ PN V++  L  A     +L    + Y E +++S+  + 
Sbjct: 285 CNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDI 344

Query: 234 -NWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELW 292
             +S+L     ++  L + K +  +  +    PNV   +Y   I+ F +  +V    EL+
Sbjct: 345 FTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNV--VTYNTLIKGFCKAKRVEEGMELF 402

Query: 293 LEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALG-C-- 349
            EM     +  T  YN++I    + G  D A  + K+M  +G  P+ ITY  L  G C  
Sbjct: 403 REMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSILLDGLCKY 462

Query: 350 ----------------------FKSNLVEEGF-KA--LELGMKLITTKKVRSSTPWLETT 384
                                 +  N++ EG  KA  +E G  L  +  ++   P +   
Sbjct: 463 GKLEKALVVFEYLQKSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVIIY 522

Query: 385 LSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVK--AKINDPNLLRRMIL 442
            ++I  F  KG    A+ LF E+K+      +  YNTLI+A ++   K     L++ M  
Sbjct: 523 TTMISGFCRKGLKEEADALFREMKEDGTLPNSGTYNTLIRARLRDGDKAASAELIKEMRS 582

Query: 443 GGARPDAETYSLL 455
            G   DA T S++
Sbjct: 583 CGFVGDASTISMV 595



 Score = 62.0 bits (149), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 75/350 (21%), Positives = 138/350 (39%), Gaps = 49/350 (14%)

Query: 111 IKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHI 170
           I  ++  + +M V+ +  + + FN LI       +      ++ +M A    P + T+  
Sbjct: 150 ISEAVALVDQMFVMEYQPNTVTFNTLIHGLFLHNKASEAVALIDRMVARGCQPDLFTYGT 209

Query: 171 LMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSM 230
           ++       +I+  + +   M++ ++E + V Y  +  A    +    A      ++   
Sbjct: 210 VVNGLCKRGDIDLALSLLKKMEKGKIEADVVIYTTIIDALCNYKNVNDALNLFTEMDNKG 269

Query: 231 TGNNWSTLDVLIILYGYLAKGKDLERIWATVQEL---PNVRSKSYVLAIEAFGRIAQVSR 287
              N  T + LI       +  D  R+ + + E    PNV + S +  I+AF +  ++  
Sbjct: 270 IRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSAL--IDAFVKEGKLVE 327

Query: 288 AEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLAL 347
           AE+L+ EM           Y+S+I+ +C +  +D+A  + + M    C PN +TY  L  
Sbjct: 328 AEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIK 387

Query: 348 GCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEEL 407
           G  K+  VEEG +                                          LF E+
Sbjct: 388 GFCKAKRVEEGME------------------------------------------LFREM 405

Query: 408 KKANYTKYTFVYNTLIKAYVKAKIND--PNLLRRMILGGARPDAETYSLL 455
            +      T  YNTLI+   +A   D    + ++M+  G  PD  TYS+L
Sbjct: 406 SQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSIL 455



 Score = 61.6 bits (148), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 55/218 (25%), Positives = 96/218 (44%), Gaps = 13/218 (5%)

Query: 244 LYGYLAKGKDLERIWATVQELPNVRSK----SYVLAIEAFGRIAQVSRAEELWLEMQSVK 299
           L   +AK    + + +  + + N+R      SY + I  F R +Q+  A  +  +M  + 
Sbjct: 70  LLSAIAKMNKFDLVISLGERMQNLRISYDLYSYNILINCFCRRSQLPLALAVLGKMMKLG 129

Query: 300 QLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGF 359
                   +S+++ YC    I +A  L+ +M +   +PN +T+  L  G F  N   E  
Sbjct: 130 YEPDIVTLSSLLNGYCHGKRISEAVALVDQMFVMEYQPNTVTFNTLIHGLFLHNKASE-- 187

Query: 360 KALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVY 419
                 + LI     R   P L T  +++    ++GD+  A +L ++++K        +Y
Sbjct: 188 -----AVALIDRMVARGCQPDLFTYGTVVNGLCKRGDIDLALSLLKKMEKGKIEADVVIY 242

Query: 420 NTLIKAYVKAK-INDP-NLLRRMILGGARPDAETYSLL 455
            T+I A    K +ND  NL   M   G RP+  TY+ L
Sbjct: 243 TTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSL 280


>gi|2335106|gb|AAC02776.1| putative salt-inducible protein [Arabidopsis thaliana]
          Length = 810

 Score = 82.8 bits (203), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 84/395 (21%), Positives = 163/395 (41%), Gaps = 55/395 (13%)

Query: 4   LPRGEPVGSAFQSWM----REGFPVHRGEIFHSINRLRKLQLNKRALEVMEWVIRERPYR 59
           L R E V     SW+    R+ FPV    +   ++R   ++L    + V +W+  ++ Y 
Sbjct: 88  LNRWEEVDGVLNSWVGRFARKNFPV----LIRELSRRGCIEL---CVNVFKWMKIQKNYC 140

Query: 60  PKELDYSYLLEFTIKNHGISQGEKLF------CCIPK---------------------DY 92
            +   Y+ ++    +++ + Q   LF       C P                      + 
Sbjct: 141 ARNDIYNMMIRLHARHNWVDQARGLFFEMQKWSCKPDAETYDALINAHGRAGQWRWAMNL 200

Query: 93  QNELL----------YNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSS 142
            +++L          YNNL+ AC   G  + +LE  KKM   G     +  N ++    S
Sbjct: 201 MDDMLRAAIAPSRSTYNNLINACGSSGNWREALEVCKKMTDNGVGPDLVTHNIVLSAYKS 260

Query: 143 PGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDM--KRSEVEPNE 200
             +     +    MK  KV P  +TF+I++   +        + +++ M  KR+E  P+ 
Sbjct: 261 GRQYSKALSYFELMKGAKVRPDTTTFNIIIYCLSKLGQSSQALDLFNSMREKRAECRPDV 320

Query: 201 VSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWAT 260
           V++  +   ++V           EA+       N  + + L+  Y           +   
Sbjct: 321 VTFTSIMHLYSVKGEIENCRAVFEAMVAEGLKPNIVSYNALMGAYAVHGMSGTALSVLGD 380

Query: 261 VQE---LPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKN 317
           +++   +P+V   SY   + ++GR  Q  +A+E++L M+  ++      YN++I  Y  N
Sbjct: 381 IKQNGIIPDV--VSYTCLLNSYGRSRQPGKAKEVFLMMRKERRKPNVVTYNALIDAYGSN 438

Query: 318 GFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKS 352
           GF+ +A  + ++M  +G KPN ++   L   C +S
Sbjct: 439 GFLAEAVEIFRQMEQDGIKPNVVSVCTLLAACSRS 473



 Score = 49.7 bits (117), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 59/280 (21%), Positives = 122/280 (43%), Gaps = 24/280 (8%)

Query: 94  NELLYNNLVIACLDKGVIKLSLEYMKKMR---VLGHSISYLVFNRLIILNSSPGRRKTIP 150
           N + YN L+ A    G+   +L  +  ++   ++   +SY         +  PG+ K   
Sbjct: 354 NIVSYNALMGAYAVHGMSGTALSVLGDIKQNGIIPDVVSYTCLLNSYGRSRQPGKAK--- 410

Query: 151 NILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAH 210
            +   M+ ++  P+V T++ L+    ++  +   ++++  M++  ++PN VS C L  A 
Sbjct: 411 EVFLMMRKERRKPNVVTYNALIDAYGSNGFLAEAVEIFRQMEQDGIKPNVVSVCTLLAAC 470

Query: 211 AVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQEL--PNVR 268
           + ++     +T + A +      N +  +  I   G      +LE+  A  Q +    V+
Sbjct: 471 SRSKKKVNVDTVLSAAQSRGINLNTAAYNSAI---GSYINAAELEKAIALYQSMRKKKVK 527

Query: 269 SKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLK 328
           + S    I   G   ++S+  E      ++  LK  E  +  ++   K G + +A  +  
Sbjct: 528 ADSVTFTILISGS-CRMSKYPE------AISYLKEMEDLSIPLT---KEGQVTEAESIFN 577

Query: 329 EMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKL 368
           +M M GC+P+ I Y  +       N  E+  KA EL +++
Sbjct: 578 QMKMAGCEPDVIAYTSM---LHAYNASEKWGKACELFLEM 614



 Score = 40.0 bits (92), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 41/166 (24%), Positives = 66/166 (39%), Gaps = 7/166 (4%)

Query: 258 WATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKN 317
           W  +Q+    R+  Y + I    R   V +A  L+ EMQ        E Y+++I+ + + 
Sbjct: 132 WMKIQKNYCARNDIYNMMIRLHARHNWVDQARGLFFEMQKWSCKPDAETYDALINAHGRA 191

Query: 318 GFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSS 377
           G    A  L+ +M      P+  TY +L   C  S    E   ALE+  K+         
Sbjct: 192 GQWRWAMNLMDDMLRAAIAPSRSTYNNLINACGSSGNWRE---ALEVCKKMTDN----GV 244

Query: 378 TPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLI 423
            P L T   ++  +        A + FE +K A     T  +N +I
Sbjct: 245 GPDLVTHNIVLSAYKSGRQYSKALSYFELMKGAKVRPDTTTFNIII 290



 Score = 38.9 bits (89), Expect = 5.9,   Method: Compositional matrix adjust.
 Identities = 35/166 (21%), Positives = 69/166 (41%), Gaps = 10/166 (6%)

Query: 292 WLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFK 351
           W+++Q        + YN +I ++ ++ ++D+A GL  EM    CKP+A TY  L     +
Sbjct: 132 WMKIQK-NYCARNDIYNMMIRLHARHNWVDQARGLFFEMQKWSCKPDAETYDALINAHGR 190

Query: 352 SNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKAN 411
           +             M L+      +  P   T  ++I      G+   A  + +++    
Sbjct: 191 AG-------QWRWAMNLMDDMLRAAIAPSRSTYNNLINACGSSGNWREALEVCKKMTDNG 243

Query: 412 YTKYTFVYNTLIKAYVKAKINDPNLLRRMILGGA--RPDAETYSLL 455
                  +N ++ AY   +     L    ++ GA  RPD  T++++
Sbjct: 244 VGPDLVTHNIVLSAYKSGRQYSKALSYFELMKGAKVRPDTTTFNII 289


>gi|357163843|ref|XP_003579864.1| PREDICTED: pentatricopeptide repeat-containing protein At5g09450,
           mitochondrial-like [Brachypodium distachyon]
          Length = 422

 Score = 82.8 bits (203), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 75/330 (22%), Positives = 140/330 (42%), Gaps = 11/330 (3%)

Query: 13  AFQSWMREGFPVHRGEIFHSINRLRKLQLNKRALEVMEWVIRERPYRPKELDYSYLLEFT 72
           A   W  EG      E+      L + +  K ALEV EW+         E DY   ++  
Sbjct: 87  ALDRWAGEGRAAPAPELRRVARDLSRARRYKHALEVAEWMKTHHESDLSENDYGVRIDLI 146

Query: 73  IKNHGISQGEKLFCCIPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLV 132
            K  G +  E  F  +P + ++   Y  L+ +     +   +    ++M+    SI  LV
Sbjct: 147 TKVFGANAAEDFFEKLPSEAKSLEAYTALLHSYARSKMTDKAERLFERMKDADLSIDVLV 206

Query: 133 FNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMK 192
           +N ++ L  S G    +P +  ++K   V+P + T+++ +   A   ++E    +  +M 
Sbjct: 207 YNEMMTLYISVGELDKVPAVAEELKRQNVSPDLFTYNLRISASAASMDLEIFKGILDEMS 266

Query: 193 RSEVEPNE----VSYCILATAHA-VARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGY 247
           +   +PN       Y  LAT +   ++L +   + VEA E  ++   W T D LI+L+  
Sbjct: 267 K---DPNSNEGWTLYRNLATIYVNASQLVSSGNSLVEA-EAKISQREWITYDFLILLHTG 322

Query: 248 LAKGKDLERIWATVQELPN-VRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLK-ATE 305
           L   + ++ IW ++Q     + S++Y+  + ++    Q+  A+E+  + Q  K  +    
Sbjct: 323 LGNLERVKDIWKSMQMTSQRMTSRNYICVLSSYLMCGQLKDAKEIVDQWQRSKAPEFDIS 382

Query: 306 QYNSVISVYCKNGFIDKASGLLKEMSMNGC 335
             N +       GF D A    + M    C
Sbjct: 383 ACNRLFDALLGAGFTDTADSFRELMLQKSC 412


>gi|255574497|ref|XP_002528160.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223532417|gb|EEF34211.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 569

 Score = 82.8 bits (203), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 94/442 (21%), Positives = 180/442 (40%), Gaps = 37/442 (8%)

Query: 33  INRLRKLQLNKR---ALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQGEKLFC--- 86
           IN + +L+LNK+    L + +W++    ++   + ++ +++   +       E  +    
Sbjct: 116 INVVVQLRLNKKWDLILLICQWILYRSSFQSDVMIFNLVIDAYGRKSLYKMAETTYFELI 175

Query: 87  ---CIPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSP 143
              CIP     E  Y  L+ A    G+++ +     +MR  G   S +V+N  I      
Sbjct: 176 EARCIP----TEDTYALLLKAYCTSGLLEKAEAIFAEMRKYGLPPSAIVYNAYIDGLMKA 231

Query: 144 GRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSY 203
           G  +    I ++MK D   P   T+ +L+ +          +K++++M+  + +PN  +Y
Sbjct: 232 GNPQRAVEIFQRMKRDCCQPSTETYTLLINLHGKASQSYMALKLFNEMRSQKCKPNICTY 291

Query: 204 CILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQE 263
             L  A A   L   AE   E L++     +    + L+  Y           I++ +Q 
Sbjct: 292 TALVNAFAREGLCEKAEEIFEQLQEDGHEPDVYAYNALMEAYSRAGFPYGAAEIFSLMQH 351

Query: 264 LPNVRSK-SYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDK 322
           +     + SY + ++A+GR      A+ ++ EM+ +      + +  ++S Y K G + K
Sbjct: 352 MGCEPDRASYNIMVDAYGRGGLHEDAQAVFEEMKRLGITPTMKSHMLLLSAYSKAGDVAK 411

Query: 323 ASGLLKEMSMNGCKPNAITYRHL-----ALGCFKSNLVEEGFKALELG--MKLITTKKVR 375
              ++ E+  +G +P+      +      LG F    +EE   A+E G     I+T  + 
Sbjct: 412 CEDIVNELHESGLEPDTFVLNSMLNLYGRLGQFGK--MEEVLTAMESGPYATDISTYNI- 468

Query: 376 SSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKINDPN 435
                      +I I+   G     E LF+ L   N       + + + AY + K+    
Sbjct: 469 -----------LINIYGRAGFFEKMEGLFQSLAAKNLKPDVVTWTSRLGAYSRKKLYTKC 517

Query: 436 L--LRRMILGGARPDAETYSLL 455
           L     MI  G  PD  T  +L
Sbjct: 518 LEIFEEMIDAGCHPDGRTAKVL 539



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 72/332 (21%), Positives = 134/332 (40%), Gaps = 12/332 (3%)

Query: 33  INRLRKLQLNKRALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQGEKLFC------ 86
           I+ L K    +RA+E+ + + R+   +P    Y+ L+    K        KLF       
Sbjct: 225 IDGLMKAGNPQRAVEIFQRMKRD-CCQPSTETYTLLINLHGKASQSYMALKLFNEMRSQK 283

Query: 87  CIPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRR 146
           C P    N   Y  LV A   +G+ + + E  ++++  GH      +N L+   S  G  
Sbjct: 284 CKP----NICTYTALVNAFAREGLCEKAEEIFEQLQEDGHEPDVYAYNALMEAYSRAGFP 339

Query: 147 KTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCIL 206
                I   M+     P  ++++I++         E    V+ +MKR  + P   S+ +L
Sbjct: 340 YGAAEIFSLMQHMGCEPDRASYNIMVDAYGRGGLHEDAQAVFEEMKRLGITPTMKSHMLL 399

Query: 207 ATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPN 266
            +A++ A      E  V  L +S    +   L+ ++ LYG L +   +E +   ++  P 
Sbjct: 400 LSAYSKAGDVAKCEDIVNELHESGLEPDTFVLNSMLNLYGRLGQFGKMEEVLTAMESGPY 459

Query: 267 VRS-KSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASG 325
                +Y + I  +GR     + E L+  + +         + S +  Y +     K   
Sbjct: 460 ATDISTYNILINIYGRAGFFEKMEGLFQSLAAKNLKPDVVTWTSRLGAYSRKKLYTKCLE 519

Query: 326 LLKEMSMNGCKPNAITYRHLALGCFKSNLVEE 357
           + +EM   GC P+  T + L   C   + +E+
Sbjct: 520 IFEEMIDAGCHPDGRTAKVLLSSCSSEDQIEQ 551


>gi|302771513|ref|XP_002969175.1| hypothetical protein SELMODRAFT_90172 [Selaginella moellendorffii]
 gi|300163680|gb|EFJ30291.1| hypothetical protein SELMODRAFT_90172 [Selaginella moellendorffii]
          Length = 399

 Score = 82.8 bits (203), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 80/332 (24%), Positives = 134/332 (40%), Gaps = 52/332 (15%)

Query: 129 SYLVFNRLIILNSSPGRRKTIPNILRQMKAD-KVAPHVSTFHILMKIEANDHNIEGLMKV 187
           +Y V  R   L    G  +   ++LR+M+    +AP  S ++  +        +   M+V
Sbjct: 20  TYFVLVRAHCL---AGELQAAMDLLREMEQQPGMAPTPSMYNFFVHALCKSGKVPEAMEV 76

Query: 188 YSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGY 247
             +MK    +P+ V++  L      A     A+  ++ +E+S    N  T + LI     
Sbjct: 77  VKNMKDGACKPDVVTFNTLIAGLCKAGRLDEAQQVLDEMERSGFAANLVTYNTLI----- 131

Query: 248 LAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQY 307
                                             ++   R+ E  L MQ +     T+ Y
Sbjct: 132 --------------------------------NGLSSAGRSGEAVLVMQGMTTTPDTQTY 159

Query: 308 NSVISVYCKNGFIDKASGLLKEMSMN-GCKPNAITYRHLALG-CFKSNLVEEGFKALELG 365
           N++I  +CK+G ID+A G L+EM    GC P+  TY  L  G C  SNL     KA EL 
Sbjct: 160 NAIIHGFCKSGEIDRAYGFLEEMKQRAGCSPDTFTYSILINGLCKSSNLR----KADELL 215

Query: 366 MKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKA 425
            ++I  K   +S     T   +++ + +  D+  A  L   + +         Y+T+I  
Sbjct: 216 QEMIGRKDCCASVVAFNT---LVDGYCKAQDLDRARELLSSMLEHGCAPDVVTYSTIIDG 272

Query: 426 YVKAKINDPN--LLRRMILGGARPDAETYSLL 455
             +    D    LL +M+  G +PD  TY++L
Sbjct: 273 LCRCGDVDKGFALLEKMVSRGCKPDVVTYTVL 304



 Score = 75.5 bits (184), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 71/331 (21%), Positives = 148/331 (44%), Gaps = 25/331 (7%)

Query: 105 CLDKGVIKLSLEYMKKM-RVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAP 163
           CL  G ++ +++ +++M +  G + +  ++N  +      G+      +++ MK     P
Sbjct: 29  CL-AGELQAAMDLLREMEQQPGMAPTPSMYNFFVHALCKSGKVPEAMEVVKNMKDGACKP 87

Query: 164 HVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYV 223
            V TF+ L+        ++   +V  +M+RS    N V+Y  L    + A     A   +
Sbjct: 88  DVVTFNTLIAGLCKAGRLDEAQQVLDEMERSGFAANLVTYNTLINGLSSAGRSGEAVLVM 147

Query: 224 EALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSKS-----YVLAIEA 278
           + +  +     ++      I++G+   G +++R +  ++E+      S     Y + I  
Sbjct: 148 QGMTTTPDTQTYNA-----IIHGFCKSG-EIDRAYGFLEEMKQRAGCSPDTFTYSILING 201

Query: 279 FGRIAQVSRAEELWLEMQSVKQLKATE-QYNSVISVYCKNGFIDKASGLLKEMSMNGCKP 337
             + + + +A+EL  EM   K   A+   +N+++  YCK   +D+A  LL  M  +GC P
Sbjct: 202 LCKSSNLRKADELLQEMIGRKDCCASVVAFNTLVDGYCKAQDLDRARELLSSMLEHGCAP 261

Query: 338 NAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDV 397
           + +TY  +  G  +   V++GF  LE   K+++    R   P + T   ++    + G +
Sbjct: 262 DVVTYSTIIDGLCRCGDVDKGFALLE---KMVS----RGCKPDVVTYTVLVTGLCKAGKM 314

Query: 398 GNA----ENLFEELKKANYTKYTFVYNTLIK 424
             A    + + E+    N   Y+ V++ L K
Sbjct: 315 VEACRLVKRMLEDGCTPNAVTYSLVFDGLCK 345


>gi|291622145|emb|CBJ23782.1| pentatricopeptide (PPR) repeat-containing protein [Arabidopsis
           thaliana]
          Length = 630

 Score = 82.8 bits (203), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 100/436 (22%), Positives = 186/436 (42%), Gaps = 37/436 (8%)

Query: 55  ERPYRPKELDYSYLLEFTIKNHGISQGEKLFC-CIPKDYQNELL-YNNLVIACLDKGVIK 112
           E  Y+P  + ++ L+     ++  S+   L    + +  Q +L  Y  +V     +G I 
Sbjct: 179 EMGYKPDTVTFNTLIHGLFLHNKASEAVALIDRMVARGCQPDLFTYGTVVNGLCKRGDID 238

Query: 113 LSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILM 172
           L+L  +KKM       + +++N +I             ++  +M+   + P V T++ L+
Sbjct: 239 LALSLLKKMEKGKIEANVVIYNTIIDGLCKYKHMDDAFDLFNKMETKGIKPDVFTYNSLI 298

Query: 173 KIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAV-ARLYTVAETYVEALEKSMT 231
               N        ++ SDM   ++ PN V++  L  A A   +L    + + E +++S+ 
Sbjct: 299 SCLCNYGRWSDASRLLSDMIERKINPNVVTFNSLIDAFAKEGKLIEAEKLFDEMIQRSID 358

Query: 232 GN--NWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAE 289
            N   +++L     ++  L + + +  +  +   LP+V   +Y   I+ F +  +V    
Sbjct: 359 PNIVTYNSLINGFCMHDRLDEAQQIFTLMVSKDCLPDV--VTYNTLIKGFCKAKRVEEGM 416

Query: 290 ELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALG- 348
           EL+ EM     +  T  YN++I    + G  D A  + K+M  +G  P+ ITY  L  G 
Sbjct: 417 ELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSILLDGL 476

Query: 349 C------------------------FKSNLVEEGF-KA--LELGMKLITTKKVRSSTPWL 381
           C                        +  N++ EG  KA  +E G  L  +  ++   P +
Sbjct: 477 CKYGKLEKALVVFEYLQKSKMEPNIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNV 536

Query: 382 ETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVK--AKINDPNLLRR 439
               ++I  F  KG    A+ LF E+K+      +  YNTLI+A ++   K     L++ 
Sbjct: 537 IIYTTMISGFCRKGLKEEADALFREMKEDGTLPDSGCYNTLIRARLRDGDKAASAELIKE 596

Query: 440 MILGGARPDAETYSLL 455
           M   G   DA T S++
Sbjct: 597 MRSCGFVGDASTISMV 612



 Score = 55.5 bits (132), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 70/335 (20%), Positives = 135/335 (40%), Gaps = 20/335 (5%)

Query: 129 SYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVY 188
           S + F++L+   +   +   + ++  QM+   +  +  T+ IL+        +   + V 
Sbjct: 80  SIIEFSKLLSAIAKMNKFDVVISLGEQMQNLGIPHNHYTYSILLNCFCRRSQLPLALAVL 139

Query: 189 SDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYL 248
             M +   EP+ V+   L   +   +  + A   V+ + +     +  T + LI  +G  
Sbjct: 140 GKMMKLGYEPDIVTLSSLLNGYCHGKRISEAVALVDQMVEMGYKPDTVTFNTLI--HGLF 197

Query: 249 AKGKDLERIWATVQEL------PNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLK 302
              K  E + A +  +      P++ +  Y   +    +   +  A  L  +M+  K   
Sbjct: 198 LHNKASEAV-ALIDRMVARGCQPDLFT--YGTVVNGLCKRGDIDLALSLLKKMEKGKIEA 254

Query: 303 ATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKAL 362
               YN++I   CK   +D A  L  +M   G KP+  TY  L + C  +      +   
Sbjct: 255 NVVIYNTIIDGLCKYKHMDDAFDLFNKMETKGIKPDVFTYNSL-ISCLCN------YGRW 307

Query: 363 ELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTL 422
               +L++    R   P + T  S+I+ FA++G +  AE LF+E+ + +       YN+L
Sbjct: 308 SDASRLLSDMIERKINPNVVTFNSLIDAFAKEGKLIEAEKLFDEMIQRSIDPNIVTYNSL 367

Query: 423 IKAYVKAKIND--PNLLRRMILGGARPDAETYSLL 455
           I  +      D    +   M+     PD  TY+ L
Sbjct: 368 INGFCMHDRLDEAQQIFTLMVSKDCLPDVVTYNTL 402


>gi|79369396|ref|NP_176481.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806495|sp|Q9LQ14.2|PPR96_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g62930, chloroplastic; Flags: Precursor
 gi|332195902|gb|AEE34023.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 629

 Score = 82.4 bits (202), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 100/433 (23%), Positives = 183/433 (42%), Gaps = 37/433 (8%)

Query: 58  YRPKELDYSYLLEFTIKNHGISQGEKLFC-CIPKDYQNELL-YNNLVIACLDKGVIKLSL 115
           Y+P  + ++ L+     ++  S+   L    + +  Q +L  Y  +V     +G I L+L
Sbjct: 181 YQPNTVTFNTLIHGLFLHNKASEAVALIDRMVARGCQPDLFTYGTVVNGLCKRGDIDLAL 240

Query: 116 EYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIE 175
             +KKM         +++  +I    +        N+  +M    + P+V T++ L++  
Sbjct: 241 SLLKKMEKGKIEADVVIYTTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCL 300

Query: 176 ANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAV-ARLYTVAETYVEALEKSMTGN- 233
            N        ++ SDM   ++ PN V++  L  A     +L    + Y E +++S+  + 
Sbjct: 301 CNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDI 360

Query: 234 -NWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELW 292
             +S+L     ++  L + K +  +  +    PNV   +Y   I+ F +  +V    EL+
Sbjct: 361 FTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNV--VTYNTLIKGFCKAKRVEEGMELF 418

Query: 293 LEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALG-C-- 349
            EM     +  T  YN++I    + G  D A  + K+M  +G  P+ ITY  L  G C  
Sbjct: 419 REMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSILLDGLCKY 478

Query: 350 ----------------------FKSNLVEEGF-KA--LELGMKLITTKKVRSSTPWLETT 384
                                 +  N++ EG  KA  +E G  L  +  ++   P +   
Sbjct: 479 GKLEKALVVFEYLQKSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVIIY 538

Query: 385 LSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVK--AKINDPNLLRRMIL 442
            ++I  F  KG    A+ LF E+K+      +  YNTLI+A ++   K     L++ M  
Sbjct: 539 TTMISGFCRKGLKEEADALFREMKEDGTLPNSGTYNTLIRARLRDGDKAASAELIKEMRS 598

Query: 443 GGARPDAETYSLL 455
            G   DA T S++
Sbjct: 599 CGFVGDASTISMV 611



 Score = 62.0 bits (149), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 75/350 (21%), Positives = 138/350 (39%), Gaps = 49/350 (14%)

Query: 111 IKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHI 170
           I  ++  + +M V+ +  + + FN LI       +      ++ +M A    P + T+  
Sbjct: 166 ISEAVALVDQMFVMEYQPNTVTFNTLIHGLFLHNKASEAVALIDRMVARGCQPDLFTYGT 225

Query: 171 LMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSM 230
           ++       +I+  + +   M++ ++E + V Y  +  A    +    A      ++   
Sbjct: 226 VVNGLCKRGDIDLALSLLKKMEKGKIEADVVIYTTIIDALCNYKNVNDALNLFTEMDNKG 285

Query: 231 TGNNWSTLDVLIILYGYLAKGKDLERIWATVQEL---PNVRSKSYVLAIEAFGRIAQVSR 287
              N  T + LI       +  D  R+ + + E    PNV + S +  I+AF +  ++  
Sbjct: 286 IRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSAL--IDAFVKEGKLVE 343

Query: 288 AEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLAL 347
           AE+L+ EM           Y+S+I+ +C +  +D+A  + + M    C PN +TY  L  
Sbjct: 344 AEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIK 403

Query: 348 GCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEEL 407
           G  K+  VEEG +                                          LF E+
Sbjct: 404 GFCKAKRVEEGME------------------------------------------LFREM 421

Query: 408 KKANYTKYTFVYNTLIKAYVKAKIND--PNLLRRMILGGARPDAETYSLL 455
            +      T  YNTLI+   +A   D    + ++M+  G  PD  TYS+L
Sbjct: 422 SQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSIL 471



 Score = 61.6 bits (148), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 55/218 (25%), Positives = 96/218 (44%), Gaps = 13/218 (5%)

Query: 244 LYGYLAKGKDLERIWATVQELPNVRSK----SYVLAIEAFGRIAQVSRAEELWLEMQSVK 299
           L   +AK    + + +  + + N+R      SY + I  F R +Q+  A  +  +M  + 
Sbjct: 86  LLSAIAKMNKFDLVISLGERMQNLRISYDLYSYNILINCFCRRSQLPLALAVLGKMMKLG 145

Query: 300 QLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGF 359
                   +S+++ YC    I +A  L+ +M +   +PN +T+  L  G F  N   E  
Sbjct: 146 YEPDIVTLSSLLNGYCHGKRISEAVALVDQMFVMEYQPNTVTFNTLIHGLFLHNKASE-- 203

Query: 360 KALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVY 419
                 + LI     R   P L T  +++    ++GD+  A +L ++++K        +Y
Sbjct: 204 -----AVALIDRMVARGCQPDLFTYGTVVNGLCKRGDIDLALSLLKKMEKGKIEADVVIY 258

Query: 420 NTLIKAYVKAK-INDP-NLLRRMILGGARPDAETYSLL 455
            T+I A    K +ND  NL   M   G RP+  TY+ L
Sbjct: 259 TTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSL 296


>gi|225423724|ref|XP_002276864.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g35130-like [Vitis vinifera]
          Length = 587

 Score = 82.4 bits (202), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 96/441 (21%), Positives = 179/441 (40%), Gaps = 35/441 (7%)

Query: 33  INRLRKLQLNKR---ALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQGEKLFC--- 86
           IN   +L+LNK+    + +  W++    + P  + Y+ L++   +     + E  +    
Sbjct: 136 INVAVQLRLNKQWDAIVLICGWILYRSSFHPDVICYNLLIDAYGQKSLYKKAESTYLELL 195

Query: 87  ---CIPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSP 143
              C+P     E  Y  L+ A    G+++ +     +MR  G   S +V+N  I      
Sbjct: 196 EARCVP----TEDTYALLLKAYCTSGLLEKAEAVFAEMRKYGFPPSAVVYNAYIDGLMKG 251

Query: 144 GRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSY 203
           G  +    I  +MK D+  P  +T+ +L+ +          +KV+ +M+  + +PN  ++
Sbjct: 252 GDTQKAVEIFERMKRDRCQPSTATYTMLINLYGKASKSYMALKVFHEMRSQKCKPNICTF 311

Query: 204 CILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQE 263
             L  A A   L   AE   E L+++    +    + L+  Y           I++ +Q 
Sbjct: 312 TALVNAFAREGLCEKAEEIFEQLQEAGLEPDVYAYNALMEAYSRAGFPYGAAEIFSLMQH 371

Query: 264 LPNVRSK-SYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDK 322
           +     + SY + ++A+GR      A+ ++  M+ +      + +  ++S Y + G + K
Sbjct: 372 MGCEPDRASYNIMVDAYGRAGLHEDAQAVFEVMKRLGITPTMKSHMLLLSAYSRAGKVAK 431

Query: 323 ASGLLKEMSMNGCKPNAITYRHL-----ALGCFKSNLVEEGFKALELGMKLITTKKVRSS 377
              ++ +M  +G KP+      +      LG F+   +EE   A+E G            
Sbjct: 432 CEEIVNQMHKSGIKPDTFVLNSMLNLYGRLGQFEK--MEEVLTAMEKG-----------P 478

Query: 378 TPWLETTLSI-IEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKINDPNL 436
            P   +T +I I I+   G     E LF  L   N       + + I AY + K  +  L
Sbjct: 479 YPADISTYNILINIYGRAGFFARMEELFRSLPARNLIPDVVTWTSRIGAYSRRKQYNRCL 538

Query: 437 --LRRMILGGARPDAETYSLL 455
                MI  G  PD  T  +L
Sbjct: 539 EVFEEMIDAGCYPDGGTAKVL 559



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 77/357 (21%), Positives = 146/357 (40%), Gaps = 12/357 (3%)

Query: 8   EPVGSAFQSWMREGFPVHRGEIFHSINRLRKLQLNKRALEVMEWVIRERPYRPKELDYSY 67
           E   + F    + GFP         I+ L K    ++A+E+ E + R+R  +P    Y+ 
Sbjct: 220 EKAEAVFAEMRKYGFPPSAVVYNAYIDGLMKGGDTQKAVEIFERMKRDRC-QPSTATYTM 278

Query: 68  LLEFTIKNHGISQGEKLFC------CIPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKM 121
           L+    K        K+F       C P    N   +  LV A   +G+ + + E  +++
Sbjct: 279 LINLYGKASKSYMALKVFHEMRSQKCKP----NICTFTALVNAFAREGLCEKAEEIFEQL 334

Query: 122 RVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNI 181
           +  G       +N L+   S  G       I   M+     P  ++++I++         
Sbjct: 335 QEAGLEPDVYAYNALMEAYSRAGFPYGAAEIFSLMQHMGCEPDRASYNIMVDAYGRAGLH 394

Query: 182 EGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVL 241
           E    V+  MKR  + P   S+ +L +A++ A      E  V  + KS    +   L+ +
Sbjct: 395 EDAQAVFEVMKRLGITPTMKSHMLLLSAYSRAGKVAKCEEIVNQMHKSGIKPDTFVLNSM 454

Query: 242 IILYGYLAKGKDLERIWATVQELPNVRS-KSYVLAIEAFGRIAQVSRAEELWLEMQSVKQ 300
           + LYG L + + +E +   +++ P      +Y + I  +GR    +R EEL+  + +   
Sbjct: 455 LNLYGRLGQFEKMEEVLTAMEKGPYPADISTYNILINIYGRAGFFARMEELFRSLPARNL 514

Query: 301 LKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEE 357
           +     + S I  Y +    ++   + +EM   GC P+  T + L   C   + ++E
Sbjct: 515 IPDVVTWTSRIGAYSRRKQYNRCLEVFEEMIDAGCYPDGGTAKVLLSACSNGDQIQE 571


>gi|449449910|ref|XP_004142707.1| PREDICTED: pentatricopeptide repeat-containing protein At1g02060,
           chloroplastic-like [Cucumis sativus]
          Length = 757

 Score = 82.4 bits (202), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 101/433 (23%), Positives = 180/433 (41%), Gaps = 22/433 (5%)

Query: 39  LQLNKRALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQGEKLFCCIPKDYQNEL-- 96
           L+   +AL+   W  +E  Y   E  Y  +LE   +N  ++        I K  +  +  
Sbjct: 89  LRDTSKALQFFNWA-QEMGYTHTEQSYFSMLEILGRNRHLNTARNFLFSIEKRSRGIVKL 147

Query: 97  ---LYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNIL 153
               +N+L+      G+ + S++    M+  G S S + FN L+ +    GR      + 
Sbjct: 148 EARFFNSLMRNFNRAGLFQESIKVFTIMKSHGVSPSVVTFNSLLTILLKRGRTNMAKKVY 207

Query: 154 RQMKAD-KVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAV 212
            +M +   V P   TF+IL++    +  ++   ++++D+ R   EP+ V+Y  L      
Sbjct: 208 DEMLSTYGVTPDTFTFNILIRGFCMNGMVDDGFRIFNDLSRFGCEPDVVTYNTLVDGLCR 267

Query: 213 ARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSK-- 270
           A   TVA   V+ + K     N + +    ++ GY AK +++E+  A  +E+ N   K  
Sbjct: 268 AGKVTVAYNVVKGMGKKSVDLNPNVVTYTTLIRGYCAK-REIEKALAVFEEMVNQGLKAN 326

Query: 271 --SYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKA-TEQYNSVISVYCKNGFIDKASGLL 327
             +Y   I+      +  + +++             T  +N+++  +C  G +D A  + 
Sbjct: 327 NITYNTLIKGLCEARKFEKIKDILEGTAGDGTFSPDTCTFNTLMHCHCHAGNLDDALKVF 386

Query: 328 KEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSST---PWLETT 384
           + MS    +P++ TY  L     +    E   KA +L  KL+  K + S     P +   
Sbjct: 387 ERMSELKIQPDSATYSALVRSLCQGGHYE---KAEDLLDKLLERKILLSGDGCKPLVAAY 443

Query: 385 LSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKINDPN--LLRRMIL 442
             I +   E G    AE  F +L +   T+    Y TLI  + K    +    LL  M+ 
Sbjct: 444 NPIFKYLCETGKTKKAEKAFRQLMRRG-TQDPPSYKTLIMGHCKEGTFESGYELLVLMLR 502

Query: 443 GGARPDAETYSLL 455
               PD ETY  L
Sbjct: 503 KDFLPDFETYESL 515


>gi|125590560|gb|EAZ30910.1| hypothetical protein OsJ_14991 [Oryza sativa Japonica Group]
          Length = 471

 Score = 82.4 bits (202), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 76/331 (22%), Positives = 139/331 (41%), Gaps = 11/331 (3%)

Query: 12  SAFQSWMREGFPVHRGEIFHSINRLRKLQLNKRALEVMEWVIRERPYRPKELDYSYLLEF 71
           +A + W  EG      E+      L +    K ALEV EW+         E DY   ++ 
Sbjct: 135 AALERWAGEGRAASAAELRGIARDLSRAGRYKHALEVAEWMKTHHESDLSENDYGMRIDL 194

Query: 72  TIKNHGISQGEKLFCCIPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYL 131
             +  G +  E  F  +P   Q+   Y  L+ +     +   +    K+M+    S++ L
Sbjct: 195 ITRVFGANAAEDFFEKLPACVQSLEAYTALLHSYARSKMTDKAERLFKRMKDANLSMNIL 254

Query: 132 VFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDM 191
           V+N ++ L  S G    +P I  ++K  K +P + T+++ +   A   ++EG   +  +M
Sbjct: 255 VYNEMMTLYISVGELDKVPVIAEELKRQKFSPDLFTYNLRISASAASMDLEGFKGILDEM 314

Query: 192 KRSEVEPNEVS----YCILATAHAVA-RLYTVAETYVEALEKSMTGNNWSTLDVLIILYG 246
            +   +PN       Y  LA  +  A +L     + VEA E  ++   W T D L+IL+ 
Sbjct: 315 SK---DPNSNEGWKLYQNLAVIYVDAGQLVGSGNSLVEA-EAKISRREWITYDFLVILHT 370

Query: 247 YLAKGKDLERIWAT-VQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLK-AT 304
            L     ++ IW + +     + S++Y+  + ++    Q+  A E+  + Q  K  +   
Sbjct: 371 GLGNRDRIKDIWKSMLMTSQRMTSRNYICVLSSYLMCGQLKDAGEVIDQWQRSKAPEFDI 430

Query: 305 EQYNSVISVYCKNGFIDKASGLLKEMSMNGC 335
              N +   +   GF D A+   + M    C
Sbjct: 431 SACNRLFDAFLNAGFTDTANSFRELMLQKSC 461



 Score = 42.7 bits (99), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 48/207 (23%), Positives = 95/207 (45%), Gaps = 18/207 (8%)

Query: 218 VAETYVEALEKSMTGNNWST-LDVLIILYGYLAKGKDLERIWATVQELPNVRSKSYVLAI 276
           VAE      E  ++ N++   +D++  ++G  A     E++ A VQ L     ++Y   +
Sbjct: 171 VAEWMKTHHESDLSENDYGMRIDLITRVFGANAAEDFFEKLPACVQSL-----EAYTALL 225

Query: 277 EAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCK 336
            ++ R     +AE L+  M+          YN ++++Y   G +DK   + +E+      
Sbjct: 226 HSYARSKMTDKAERLFKRMKDANLSMNILVYNEMMTLYISVGELDKVPVIAEELKRQKFS 285

Query: 337 PNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPW-LETTLSIIEIFAEKG 395
           P+  TY +L +    +++  EGFK +   M    +K   S+  W L   L++  I+ + G
Sbjct: 286 PDLFTY-NLRISASAASMDLEGFKGILDEM----SKDPNSNEGWKLYQNLAV--IYVDAG 338

Query: 396 D-VGNAENLFE---ELKKANYTKYTFV 418
             VG+  +L E   ++ +  +  Y F+
Sbjct: 339 QLVGSGNSLVEAEAKISRREWITYDFL 365


>gi|30688764|ref|NP_850356.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75158748|sp|Q8RWS8.1|PP199_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At2g41720; AltName: Full=Protein EMBRYO DEFECTIVE 2654
 gi|20268762|gb|AAM14084.1| putative salt-inducible protein [Arabidopsis thaliana]
 gi|21436141|gb|AAM51317.1| putative salt-inducible protein [Arabidopsis thaliana]
 gi|330254931|gb|AEC10025.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 822

 Score = 82.4 bits (202), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 84/395 (21%), Positives = 163/395 (41%), Gaps = 55/395 (13%)

Query: 4   LPRGEPVGSAFQSWM----REGFPVHRGEIFHSINRLRKLQLNKRALEVMEWVIRERPYR 59
           L R E V     SW+    R+ FPV    +   ++R   ++L    + V +W+  ++ Y 
Sbjct: 88  LNRWEEVDGVLNSWVGRFARKNFPV----LIRELSRRGCIEL---CVNVFKWMKIQKNYC 140

Query: 60  PKELDYSYLLEFTIKNHGISQGEKLF------CCIPK---------------------DY 92
            +   Y+ ++    +++ + Q   LF       C P                      + 
Sbjct: 141 ARNDIYNMMIRLHARHNWVDQARGLFFEMQKWSCKPDAETYDALINAHGRAGQWRWAMNL 200

Query: 93  QNELL----------YNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSS 142
            +++L          YNNL+ AC   G  + +LE  KKM   G     +  N ++    S
Sbjct: 201 MDDMLRAAIAPSRSTYNNLINACGSSGNWREALEVCKKMTDNGVGPDLVTHNIVLSAYKS 260

Query: 143 PGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDM--KRSEVEPNE 200
             +     +    MK  KV P  +TF+I++   +        + +++ M  KR+E  P+ 
Sbjct: 261 GRQYSKALSYFELMKGAKVRPDTTTFNIIIYCLSKLGQSSQALDLFNSMREKRAECRPDV 320

Query: 201 VSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWAT 260
           V++  +   ++V           EA+       N  + + L+  Y           +   
Sbjct: 321 VTFTSIMHLYSVKGEIENCRAVFEAMVAEGLKPNIVSYNALMGAYAVHGMSGTALSVLGD 380

Query: 261 VQE---LPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKN 317
           +++   +P+V   SY   + ++GR  Q  +A+E++L M+  ++      YN++I  Y  N
Sbjct: 381 IKQNGIIPDV--VSYTCLLNSYGRSRQPGKAKEVFLMMRKERRKPNVVTYNALIDAYGSN 438

Query: 318 GFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKS 352
           GF+ +A  + ++M  +G KPN ++   L   C +S
Sbjct: 439 GFLAEAVEIFRQMEQDGIKPNVVSVCTLLAACSRS 473



 Score = 65.9 bits (159), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 61/282 (21%), Positives = 125/282 (44%), Gaps = 16/282 (5%)

Query: 94  NELLYNNLVIACLDKGVIKLSLEYMKKMR---VLGHSISYLVFNRLIILNSSPGRRKTIP 150
           N + YN L+ A    G+   +L  +  ++   ++   +SY         +  PG+ K   
Sbjct: 354 NIVSYNALMGAYAVHGMSGTALSVLGDIKQNGIIPDVVSYTCLLNSYGRSRQPGKAK--- 410

Query: 151 NILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAH 210
            +   M+ ++  P+V T++ L+    ++  +   ++++  M++  ++PN VS C L  A 
Sbjct: 411 EVFLMMRKERRKPNVVTYNALIDAYGSNGFLAEAVEIFRQMEQDGIKPNVVSVCTLLAAC 470

Query: 211 AVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSK 270
           + ++     +T + A +      N +  +  I   G      +LE+  A  Q +   + K
Sbjct: 471 SRSKKKVNVDTVLSAAQSRGINLNTAAYNSAI---GSYINAAELEKAIALYQSMRKKKVK 527

Query: 271 ----SYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGL 326
               ++ + I    R+++   A     EM+ +      E Y+SV+  Y K G + +A  +
Sbjct: 528 ADSVTFTILISGSCRMSKYPEAISYLKEMEDLSIPLTKEVYSSVLCAYSKQGQVTEAESI 587

Query: 327 LKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKL 368
             +M M GC+P+ I Y  +       N  E+  KA EL +++
Sbjct: 588 FNQMKMAGCEPDVIAYTSM---LHAYNASEKWGKACELFLEM 626



 Score = 40.0 bits (92), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 41/166 (24%), Positives = 66/166 (39%), Gaps = 7/166 (4%)

Query: 258 WATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKN 317
           W  +Q+    R+  Y + I    R   V +A  L+ EMQ        E Y+++I+ + + 
Sbjct: 132 WMKIQKNYCARNDIYNMMIRLHARHNWVDQARGLFFEMQKWSCKPDAETYDALINAHGRA 191

Query: 318 GFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSS 377
           G    A  L+ +M      P+  TY +L   C  S    E   ALE+  K+         
Sbjct: 192 GQWRWAMNLMDDMLRAAIAPSRSTYNNLINACGSSGNWRE---ALEVCKKMTDN----GV 244

Query: 378 TPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLI 423
            P L T   ++  +        A + FE +K A     T  +N +I
Sbjct: 245 GPDLVTHNIVLSAYKSGRQYSKALSYFELMKGAKVRPDTTTFNIII 290



 Score = 38.9 bits (89), Expect = 6.2,   Method: Compositional matrix adjust.
 Identities = 35/166 (21%), Positives = 69/166 (41%), Gaps = 10/166 (6%)

Query: 292 WLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFK 351
           W+++Q        + YN +I ++ ++ ++D+A GL  EM    CKP+A TY  L     +
Sbjct: 132 WMKIQK-NYCARNDIYNMMIRLHARHNWVDQARGLFFEMQKWSCKPDAETYDALINAHGR 190

Query: 352 SNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKAN 411
           +             M L+      +  P   T  ++I      G+   A  + +++    
Sbjct: 191 AG-------QWRWAMNLMDDMLRAAIAPSRSTYNNLINACGSSGNWREALEVCKKMTDNG 243

Query: 412 YTKYTFVYNTLIKAYVKAKINDPNLLRRMILGGA--RPDAETYSLL 455
                  +N ++ AY   +     L    ++ GA  RPD  T++++
Sbjct: 244 VGPDLVTHNIVLSAYKSGRQYSKALSYFELMKGAKVRPDTTTFNII 289


>gi|359485848|ref|XP_002267947.2| PREDICTED: pentatricopeptide repeat-containing protein At5g61990,
           mitochondrial-like [Vitis vinifera]
          Length = 1011

 Score = 82.4 bits (202), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 93/424 (21%), Positives = 175/424 (41%), Gaps = 60/424 (14%)

Query: 43  KRALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQGEKLFCCIPKD--YQNELLYNN 100
           ++ALE+M+ ++ E+   P    YS L+E   +   +++  +L   + K       L Y+ 
Sbjct: 372 EKALEIMQEMM-EKGVEPDSQTYSLLIEGHCRGQNMARAFELLDEMKKRKLAPTVLTYSV 430

Query: 101 LVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADK 160
           ++      G ++ +   +++M + G   + +V+  L+  ++  GR +    IL +M+   
Sbjct: 431 IINGLCRCGNLQGTNAILREMVMNGLKPNAVVYTTLMTAHAKEGRVEESRMILERMREQG 490

Query: 161 VAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAE 220
           + P V  ++ L+        +E       +M    + PN  +Y      ++ A    +A+
Sbjct: 491 ILPDVFCYNSLIIGFCKAKRMEEARTYLMEMLERRLRPNAHTYGAFIDGYSKAGEMEIAD 550

Query: 221 TYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLE-----RIWATVQELPNVRSKSYVLA 275
            Y   +       N      LI   G+  +G   E     R   + + L +V  ++Y + 
Sbjct: 551 RYFNEMLSCGVLPNVGIYTALI--EGHCKEGNVTEAFSVFRFILSRRVLQDV--QTYSVL 606

Query: 276 IEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGC 335
           I    R  ++  A  ++ E+Q    L     YNS+IS  CK G +DKAS LL+EM + G 
Sbjct: 607 IHGLSRNGKMHEAFGIFSELQEKGLLPNAFTYNSLISGSCKQGNVDKASQLLEEMCIKGI 666

Query: 336 KPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKG 395
            P+ +TY  L                                          I+   + G
Sbjct: 667 NPDIVTYNIL------------------------------------------IDGLCKAG 684

Query: 396 DVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKINDPN----LLRRMILGGARPDAET 451
           ++  A+NLF++++    T     Y  ++  Y K+K  +P     LL  M+L G  PDA  
Sbjct: 685 EIERAKNLFDDIEGRGLTPNCVTYAAMVDGYCKSK--NPTAAFQLLEEMLLRGVPPDAFI 742

Query: 452 YSLL 455
           Y+++
Sbjct: 743 YNVI 746



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 99/404 (24%), Positives = 160/404 (39%), Gaps = 51/404 (12%)

Query: 59  RPKELDYSYLLEFTIKNHGISQG-----EKLFCCIPKDYQNELLYNNLVIACLDKGVIKL 113
           +P+ + Y+ L++  ++   I Q      E + C I     N +++N L+      G ++ 
Sbjct: 317 KPEPITYNALIDGFMRQGDIEQAFRIKDEMVACGIEA---NLIIWNTLLNGVCKAGKMEK 373

Query: 114 SLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMK 173
           +LE M++M   G       ++ LI  +           +L +MK  K+AP V T+ +++ 
Sbjct: 374 ALEIMQEMMEKGVEPDSQTYSLLIEGHCRGQNMARAFELLDEMKKRKLAPTVLTYSVIIN 433

Query: 174 IEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGN 233
                 N++G   +  +M  + ++PN V Y  L TAHA        E  VE  E  M   
Sbjct: 434 GLCRCGNLQGTNAILREMVMNGLKPNAVVYTTLMTAHA-------KEGRVE--ESRMI-- 482

Query: 234 NWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWL 293
                               LER+      LP+V    Y   I  F +  ++  A    +
Sbjct: 483 --------------------LERMREQ-GILPDVFC--YNSLIIGFCKAKRMEEARTYLM 519

Query: 294 EMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSN 353
           EM   +       Y + I  Y K G ++ A     EM   G  PN   Y  L  G  K  
Sbjct: 520 EMLERRLRPNAHTYGAFIDGYSKAGEMEIADRYFNEMLSCGVLPNVGIYTALIEGHCKEG 579

Query: 354 LVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYT 413
            V E F       + I +++V      ++T   +I   +  G +  A  +F EL++    
Sbjct: 580 NVTEAFSVF----RFILSRRVLQD---VQTYSVLIHGLSRNGKMHEAFGIFSELQEKGLL 632

Query: 414 KYTFVYNTLIKAYVKAKIND--PNLLRRMILGGARPDAETYSLL 455
              F YN+LI    K    D    LL  M + G  PD  TY++L
Sbjct: 633 PNAFTYNSLISGSCKQGNVDKASQLLEEMCIKGINPDIVTYNIL 676



 Score = 65.1 bits (157), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 100/444 (22%), Positives = 181/444 (40%), Gaps = 59/444 (13%)

Query: 58  YRPKELDYSYLLEFTIKNHGISQGEKLF--CCIPKDYQNELLYNNLVIACLDKGVIKLSL 115
           +RP  L  + LL   +K + +    K+F   C  K   +   Y N++ A    G +K + 
Sbjct: 176 FRPSLLSCNSLLGDLLKGNKVELFWKVFDGMCAHKVLPDVYTYTNMISAHCKVGNVKDAK 235

Query: 116 EYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNIL---RQMKADKVAPHVSTFHILM 172
             + +M   G S + + +N +I       R + +   +   R M    + P + T+ IL+
Sbjct: 236 RVLLEMGEKGCSPNLVTYNVII---GGLCRARLLDEAIELKRSMVDKGLVPDLYTYDILI 292

Query: 173 KIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHA----VARLYTVAETYVE-ALE 227
                +        +  +M    ++P  ++Y  L         + + + + +  V   +E
Sbjct: 293 NGFCMEKRSREAKLMLLEMIDVGLKPEPITYNALIDGFMRQGDIEQAFRIKDEMVACGIE 352

Query: 228 KSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQEL------PNVRSKSYVLAIEAFGR 281
            ++    W+TL     L G    GK +E+    +QE+      P+  S++Y L IE   R
Sbjct: 353 ANLI--IWNTL-----LNGVCKAGK-MEKALEIMQEMMEKGVEPD--SQTYSLLIEGHCR 402

Query: 282 IAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAIT 341
              ++RA EL  EM+  K       Y+ +I+  C+ G +   + +L+EM MNG KPNA+ 
Sbjct: 403 GQNMARAFELLDEMKKRKLAPTVLTYSVIINGLCRCGNLQGTNAILREMVMNGLKPNAVV 462

Query: 342 YRHLALGCFKSNLVEEGFKALE----------------LGMKLITTKKVRSSTPWLETTL 385
           Y  L     K   VEE    LE                L +     K++  +  +L   L
Sbjct: 463 YTTLMTAHAKEGRVEESRMILERMREQGILPDVFCYNSLIIGFCKAKRMEEARTYLMEML 522

Query: 386 ------------SIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVK-AKIN 432
                       + I+ +++ G++  A+  F E+          +Y  LI+ + K   + 
Sbjct: 523 ERRLRPNAHTYGAFIDGYSKAGEMEIADRYFNEMLSCGVLPNVGIYTALIEGHCKEGNVT 582

Query: 433 DPNLLRRMILG-GARPDAETYSLL 455
           +   + R IL      D +TYS+L
Sbjct: 583 EAFSVFRFILSRRVLQDVQTYSVL 606



 Score = 62.4 bits (150), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 73/341 (21%), Positives = 135/341 (39%), Gaps = 53/341 (15%)

Query: 131 LVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSD 190
             +N LI  +   G       +L +M    + P + T++IL+        IE    ++ D
Sbjct: 636 FTYNSLISGSCKQGNVDKASQLLEEMCIKGINPDIVTYNILIDGLCKAGEIERAKNLFDD 695

Query: 191 MKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAK 250
           ++   + PN V+Y  +   +  ++  T A    + LE+ +         +  ++  +  K
Sbjct: 696 IEGRGLTPNCVTYAAMVDGYCKSKNPTAA---FQLLEEMLLRGVPPDAFIYNVILNFCCK 752

Query: 251 GKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSV 310
            +  E+     QE+                            LE    K   +T  +N++
Sbjct: 753 EEKFEKALDLFQEM----------------------------LE----KGFASTVSFNTL 780

Query: 311 ISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELG--MKL 368
           I  YCK+G + +A+ LL+EM      PN +TY         ++L++   KA  +G   +L
Sbjct: 781 IEGYCKSGKLQEANHLLEEMIEKQFIPNHVTY---------TSLIDHNCKAGMMGEAKRL 831

Query: 369 ITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVK 428
               + R+  P  +T  S++  +   G++     LFEE+           Y  +I AY +
Sbjct: 832 WLEMQERNVMPTAKTYTSLLHGYHNIGNMSEVSALFEEMVAKGIEPDKMTYYVMIDAYCR 891

Query: 429 -------AKINDPNLLRRMILGGARPDAETYSLLKLAEQFQ 462
                   K+ D  L++ M +  A  DA   +L K  E F+
Sbjct: 892 EGNVMEACKLKDEILVKGMPMSVAAYDALIQALCKKEEFFE 932



 Score = 60.1 bits (144), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 56/256 (21%), Positives = 107/256 (41%), Gaps = 14/256 (5%)

Query: 94  NELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNIL 153
           N   YN+L+     +G +  + + +++M + G +   + +N LI      G  +   N+ 
Sbjct: 634 NAFTYNSLISGSCKQGNVDKASQLLEEMCIKGINPDIVTYNILIDGLCKAGEIERAKNLF 693

Query: 154 RQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSY-CILATAHAV 212
             ++   + P+  T+  ++       N     ++  +M    V P+   Y  IL      
Sbjct: 694 DDIEGRGLTPNCVTYAAMVDGYCKSKNPTAAFQLLEEMLLRGVPPDAFIYNVILNFCCKE 753

Query: 213 ARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQEL------PN 266
            +     + + E LEK       ST+    ++ GY   GK L+     ++E+      PN
Sbjct: 754 EKFEKALDLFQEMLEKGFA----STVSFNTLIEGYCKSGK-LQEANHLLEEMIEKQFIPN 808

Query: 267 VRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGL 326
               +Y   I+   +   +  A+ LWLEMQ    +   + Y S++  Y   G + + S L
Sbjct: 809 --HVTYTSLIDHNCKAGMMGEAKRLWLEMQERNVMPTAKTYTSLLHGYHNIGNMSEVSAL 866

Query: 327 LKEMSMNGCKPNAITY 342
            +EM   G +P+ +TY
Sbjct: 867 FEEMVAKGIEPDKMTY 882



 Score = 60.1 bits (144), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 73/289 (25%), Positives = 128/289 (44%), Gaps = 22/289 (7%)

Query: 179 HNIEGLMKVYSDMKRSEVEPNEVSYCILATAHA-VARLYTVAETYVEALEKSMTGNNWST 237
           + +E   KV+  M   +V P+  +Y  + +AH  V  +       +E  EK  +  N  T
Sbjct: 194 NKVELFWKVFDGMCAHKVLPDVYTYTNMISAHCKVGNVKDAKRVLLEMGEKGCS-PNLVT 252

Query: 238 LDVLIILYGYLAKGK------DLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEEL 291
            +V+I   G L + +      +L+R       +P++ +  Y + I  F    +   A+ +
Sbjct: 253 YNVII---GGLCRARLLDEAIELKRSMVDKGLVPDLYT--YDILINGFCMEKRSREAKLM 307

Query: 292 WLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFK 351
            LEM  V        YN++I  + + G I++A  +  EM   G + N I +  L  G  K
Sbjct: 308 LLEMIDVGLKPEPITYNALIDGFMRQGDIEQAFRIKDEMVACGIEANLIIWNTLLNGVCK 367

Query: 352 SNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKAN 411
           +  +E   KALE+ M+ +  K V    P  +T   +IE      ++  A  L +E+KK  
Sbjct: 368 AGKME---KALEI-MQEMMEKGVE---PDSQTYSLLIEGHCRGQNMARAFELLDEMKKRK 420

Query: 412 YTKYTFVYNTLIKAYVK-AKINDPN-LLRRMILGGARPDAETYSLLKLA 458
                  Y+ +I    +   +   N +LR M++ G +P+A  Y+ L  A
Sbjct: 421 LAPTVLTYSVIINGLCRCGNLQGTNAILREMVMNGLKPNAVVYTTLMTA 469


>gi|255552808|ref|XP_002517447.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223543458|gb|EEF44989.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 654

 Score = 82.4 bits (202), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 90/383 (23%), Positives = 174/383 (45%), Gaps = 38/383 (9%)

Query: 43  KRALEVMEWVIRERPYRPKELDYSYLLEFTIKN------HGISQGEKLFCCIPKDYQNEL 96
           +R+L +++W+     Y P    Y+ +L   ++       HG+    +     P  Y    
Sbjct: 115 QRSLALLDWINEVARYSPSVFAYNVVLRNVLRAKKWDLAHGLFDEMRQRALSPDRYT--- 171

Query: 97  LYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQM 156
            Y+ L+ +    G+   SL ++++M     S   ++++ LI L+          +I  ++
Sbjct: 172 -YSTLITSFGKAGMFDESLFWLQQMEQDRVSGDLVLYSNLIELSRKLCDYSKAISIFMRL 230

Query: 157 KADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLY 216
           K   + P +  ++ ++ +            +  +M+   V P+ VSY  L +      +Y
Sbjct: 231 KRSGITPDLVAYNSMINVFGKARLFREARMLVHEMREVGVLPDTVSYSTLLS------VY 284

Query: 217 TVAETYVEALE--KSMTGNNWS----TLDVLIILYGYLAKGKDLERIWATVQEL---PNV 267
              E +VEAL     M   N S    T +++I +YG L   K+ +R++ +++++   PNV
Sbjct: 285 VENEKFVEALSVFAEMNEANCSLDLMTCNIMIDVYGQLDMVKEADRLFWSMRKMGIEPNV 344

Query: 268 RSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLL 327
              SY   ++ +G       A  L+  MQ  +  +    YN++I +Y K+   +KA+ L+
Sbjct: 345 --VSYNTLLKVYGEAELFGEAIHLFRLMQRKEIEQNVVTYNTMIKIYGKSLEHEKATNLV 402

Query: 328 KEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTL-- 385
           +EM   G +PNAITY         S ++    KA +L    +  +K+RSS   ++  L  
Sbjct: 403 QEMQKRGIEPNAITY---------STIISIWGKAGKLDRAAMLFQKLRSSGVEIDQVLYQ 453

Query: 386 SIIEIFAEKGDVGNAENLFEELK 408
           ++I  +   G V +A+ L  +LK
Sbjct: 454 TMIVAYERAGLVAHAKRLLHDLK 476



 Score = 57.4 bits (137), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 62/304 (20%), Positives = 137/304 (45%), Gaps = 20/304 (6%)

Query: 160 KVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVA 219
           + +P V  ++++++        +    ++ +M++  + P+  +Y  L T+   A ++  +
Sbjct: 129 RYSPSVFAYNVVLRNVLRAKKWDLAHGLFDEMRQRALSPDRYTYSTLITSFGKAGMFDES 188

Query: 220 ETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQE---LPNVRSKSYVLAI 276
             +++ +E+     +      LI L   L        I+  ++     P++   +Y   I
Sbjct: 189 LFWLQQMEQDRVSGDLVLYSNLIELSRKLCDYSKAISIFMRLKRSGITPDL--VAYNSMI 246

Query: 277 EAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCK 336
             FG+      A  L  EM+ V  L  T  Y++++SVY +N    +A  +  EM+   C 
Sbjct: 247 NVFGKARLFREARMLVHEMREVGVLPDTVSYSTLLSVYVENEKFVEALSVFAEMNEANCS 306

Query: 337 PNAITYRHLALGCFKSNLVEEGFKALEL---GMKLITTKKVRSSTPWLETTLSIIEIFAE 393
            + +T       C   N++ + +  L++     +L  + +     P + +  ++++++ E
Sbjct: 307 LDLMT-------C---NIMIDVYGQLDMVKEADRLFWSMRKMGIEPNVVSYNTLLKVYGE 356

Query: 394 KGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKIND--PNLLRRMILGGARPDAET 451
               G A +LF  +++    +    YNT+IK Y K+  ++   NL++ M   G  P+A T
Sbjct: 357 AELFGEAIHLFRLMQRKEIEQNVVTYNTMIKIYGKSLEHEKATNLVQEMQKRGIEPNAIT 416

Query: 452 YSLL 455
           YS +
Sbjct: 417 YSTI 420



 Score = 38.9 bits (89), Expect = 6.0,   Method: Compositional matrix adjust.
 Identities = 65/348 (18%), Positives = 136/348 (39%), Gaps = 37/348 (10%)

Query: 53  IRERPYRPKELDYSYLLEFTIKNHGISQGEKLFCCIPK-DYQNELLYNNLVIACLDK-GV 110
           +RE    P  + YS LL   ++N    +   +F  + + +   +L+  N++I    +  +
Sbjct: 265 MREVGVLPDTVSYSTLLSVYVENEKFVEALSVFAEMNEANCSLDLMTCNIMIDVYGQLDM 324

Query: 111 IKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHI 170
           +K +      MR +G   + + +N L+ +           ++ R M+  ++  +V T++ 
Sbjct: 325 VKEADRLFWSMRKMGIEPNVVSYNTLLKVYGEAELFGEAIHLFRLMQRKEIEQNVVTYNT 384

Query: 171 LMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSM 230
           ++KI       E    +  +M++  +EPN ++Y  + +    A     A    + L  S 
Sbjct: 385 MIKIYGKSLEHEKATNLVQEMQKRGIEPNAITYSTIISIWGKAGKLDRAAMLFQKLRSSG 444

Query: 231 TGNNWSTLDVLIILY---GYLAKGKDL--------------------------ERIWATV 261
              +      +I+ Y   G +A  K L                          E  W   
Sbjct: 445 VEIDQVLYQTMIVAYERAGLVAHAKRLLHDLKCPDIIPRDTAIKILARAGRIEEATWVFR 504

Query: 262 QELPNVRSKS---YVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNG 318
           Q       K    +   IE F R  + +   E++ +M+       ++    V++ Y K  
Sbjct: 505 QAFDAGEVKDISVFRCMIELFSRNKRPANVVEVFEKMRGAGYFPDSDVIALVLNAYGKLR 564

Query: 319 FIDKASGLLKEMSMNGCK-PNAITYRHLALGCFKSN--LVEEGFKALE 363
             +KA  + +EM    C  P+ + ++ L+L   + +  +VE  F+ L+
Sbjct: 565 EFEKADAVYREMQEEECVFPDEVHFQMLSLYGARKDFIMVESLFEKLD 612


>gi|297737955|emb|CBI27156.3| unnamed protein product [Vitis vinifera]
          Length = 625

 Score = 82.4 bits (202), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 96/441 (21%), Positives = 179/441 (40%), Gaps = 35/441 (7%)

Query: 33  INRLRKLQLNKR---ALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQGEKLFC--- 86
           IN   +L+LNK+    + +  W++    + P  + Y+ L++   +     + E  +    
Sbjct: 174 INVAVQLRLNKQWDAIVLICGWILYRSSFHPDVICYNLLIDAYGQKSLYKKAESTYLELL 233

Query: 87  ---CIPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSP 143
              C+P     E  Y  L+ A    G+++ +     +MR  G   S +V+N  I      
Sbjct: 234 EARCVP----TEDTYALLLKAYCTSGLLEKAEAVFAEMRKYGFPPSAVVYNAYIDGLMKG 289

Query: 144 GRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSY 203
           G  +    I  +MK D+  P  +T+ +L+ +          +KV+ +M+  + +PN  ++
Sbjct: 290 GDTQKAVEIFERMKRDRCQPSTATYTMLINLYGKASKSYMALKVFHEMRSQKCKPNICTF 349

Query: 204 CILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQE 263
             L  A A   L   AE   E L+++    +    + L+  Y           I++ +Q 
Sbjct: 350 TALVNAFAREGLCEKAEEIFEQLQEAGLEPDVYAYNALMEAYSRAGFPYGAAEIFSLMQH 409

Query: 264 LPNVRSK-SYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDK 322
           +     + SY + ++A+GR      A+ ++  M+ +      + +  ++S Y + G + K
Sbjct: 410 MGCEPDRASYNIMVDAYGRAGLHEDAQAVFEVMKRLGITPTMKSHMLLLSAYSRAGKVAK 469

Query: 323 ASGLLKEMSMNGCKPNAITYRHL-----ALGCFKSNLVEEGFKALELGMKLITTKKVRSS 377
              ++ +M  +G KP+      +      LG F+   +EE   A+E G            
Sbjct: 470 CEEIVNQMHKSGIKPDTFVLNSMLNLYGRLGQFEK--MEEVLTAMEKG-----------P 516

Query: 378 TPWLETTLSI-IEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKINDPNL 436
            P   +T +I I I+   G     E LF  L   N       + + I AY + K  +  L
Sbjct: 517 YPADISTYNILINIYGRAGFFARMEELFRSLPARNLIPDVVTWTSRIGAYSRRKQYNRCL 576

Query: 437 --LRRMILGGARPDAETYSLL 455
                MI  G  PD  T  +L
Sbjct: 577 EVFEEMIDAGCYPDGGTAKVL 597



 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 77/357 (21%), Positives = 146/357 (40%), Gaps = 12/357 (3%)

Query: 8   EPVGSAFQSWMREGFPVHRGEIFHSINRLRKLQLNKRALEVMEWVIRERPYRPKELDYSY 67
           E   + F    + GFP         I+ L K    ++A+E+ E + R+R  +P    Y+ 
Sbjct: 258 EKAEAVFAEMRKYGFPPSAVVYNAYIDGLMKGGDTQKAVEIFERMKRDR-CQPSTATYTM 316

Query: 68  LLEFTIKNHGISQGEKLFC------CIPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKM 121
           L+    K        K+F       C P    N   +  LV A   +G+ + + E  +++
Sbjct: 317 LINLYGKASKSYMALKVFHEMRSQKCKP----NICTFTALVNAFAREGLCEKAEEIFEQL 372

Query: 122 RVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNI 181
           +  G       +N L+   S  G       I   M+     P  ++++I++         
Sbjct: 373 QEAGLEPDVYAYNALMEAYSRAGFPYGAAEIFSLMQHMGCEPDRASYNIMVDAYGRAGLH 432

Query: 182 EGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVL 241
           E    V+  MKR  + P   S+ +L +A++ A      E  V  + KS    +   L+ +
Sbjct: 433 EDAQAVFEVMKRLGITPTMKSHMLLLSAYSRAGKVAKCEEIVNQMHKSGIKPDTFVLNSM 492

Query: 242 IILYGYLAKGKDLERIWATVQELP-NVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQ 300
           + LYG L + + +E +   +++ P      +Y + I  +GR    +R EEL+  + +   
Sbjct: 493 LNLYGRLGQFEKMEEVLTAMEKGPYPADISTYNILINIYGRAGFFARMEELFRSLPARNL 552

Query: 301 LKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEE 357
           +     + S I  Y +    ++   + +EM   GC P+  T + L   C   + ++E
Sbjct: 553 IPDVVTWTSRIGAYSRRKQYNRCLEVFEEMIDAGCYPDGGTAKVLLSACSNGDQIQE 609


>gi|218184541|gb|EEC66968.1| hypothetical protein OsI_33625 [Oryza sativa Indica Group]
          Length = 1351

 Score = 82.4 bits (202), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 87/361 (24%), Positives = 161/361 (44%), Gaps = 16/361 (4%)

Query: 94  NELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNIL 153
           N   YN LV   +  G  + +LE  K M V G   S   ++ L++   + G+R+ +  +L
Sbjct: 238 NAYTYNGLVYFLVKSGFDREALEVYKVMMVDGVVPSVRTYSVLMV---AFGKRRDVETVL 294

Query: 154 ---RQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAH 210
              R+M+A  V P+V ++ I +++       +   ++ ++M+    +P+ +++ +L    
Sbjct: 295 WLLREMEAHGVKPNVYSYTICIRVLGQARRFDEAYRILAEMENEGCKPDVITHTVLIQVL 354

Query: 211 AVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIW-ATVQELPNVRS 269
             A   + A+     ++KS    +  T   L+  +    + + +  IW A   +  N   
Sbjct: 355 CDAGRISDAKDVFWKMKKSDQKPDRVTYITLLDKFADNGESQSVMEIWNAMKADGYNDNV 414

Query: 270 KSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKE 329
            +Y   I+A  ++ +V  A E++ EM+    +     YNS+IS + K      A  L K 
Sbjct: 415 VAYTAVIDALCQVGRVFEALEMFDEMKQKGIVPEQYSYNSLISGFLKADRFGDALELFKY 474

Query: 330 MSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIE 389
           M ++G KPN  T+        KS    E  KA++   +L+ +K +    P +    +++ 
Sbjct: 475 MDIHGPKPNGYTHVLFINYYGKSG---ESIKAIQR-YELMKSKGI---VPDVVAGNAVLF 527

Query: 390 IFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKINDP--NLLRRMILGGARP 447
             A+ G +G A+ +F ELK    +  T  Y  +IK   KA   D    +   MI     P
Sbjct: 528 GLAKSGRLGMAKRVFHELKAMGVSPDTITYTMMIKCCSKASKFDEAVKIFYDMIENNCVP 587

Query: 448 D 448
           D
Sbjct: 588 D 588



 Score = 73.2 bits (178), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 86/355 (24%), Positives = 143/355 (40%), Gaps = 18/355 (5%)

Query: 116  EYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIE 175
            E +KK +  G S+    +N LI              +  +MK     P   T+++L+   
Sbjct: 820  ELVKKFKSFGVSLKTGSYNSLICGLVDENLIDIAEGLFAEMKELGCGPDEFTYNLLLDAM 879

Query: 176  ANDHNIEGLMKVYSDMKRSEVEPNEVSY-CILATAHAVARLYTVAETYVEALEKSMTGNN 234
                 IE ++KV  +M R   E   V+Y  I++      RL    + Y   + +   G +
Sbjct: 880  GKSMRIEEMLKVQEEMHRKGYESTYVTYNTIISGLVKSRRLEQAIDLYYNLMSQ---GFS 936

Query: 235  WSTLDVLIILYGYLAKGK--DLERIWATVQELPNVRSKSYVLAIEAFG-RIA-QVSRAEE 290
             +      +L G L  G+  D E ++  + E    ++   +  I   G RIA    +   
Sbjct: 937  PTPCTYGPLLDGLLKAGRIEDAENLFNEMLEY-GCKANCTIYNILLNGHRIAGNTEKVCH 995

Query: 291  LWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCF 350
            L+ +M         + Y  +I   CK G ++      +++   G +P+ ITY  L  G  
Sbjct: 996  LFQDMVDQGINPDIKSYTIIIDTLCKAGQLNDGLTYFRQLLEMGLEPDLITYNLLIDGLG 1055

Query: 351  KSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKA 410
            KS       K LE  + L    + +   P L T  S+I    + G    A  ++EEL   
Sbjct: 1056 KS-------KRLEEAVSLFNEMQKKGIVPNLYTYNSLILHLGKAGKAAEAGKMYEELLTK 1108

Query: 411  NYTKYTFVYNTLIKAYVKAKINDPNLLR--RMILGGARPDAETYSLLKLAEQFQK 463
             +    F YN LI+ Y  +   D       RMI+GG  P++ T  + +L + F K
Sbjct: 1109 GWKPNVFTYNALIRGYSVSGSTDSAYAAYGRMIVGGCLPNSSTCHIHELMKTFLK 1163



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 79/352 (22%), Positives = 141/352 (40%), Gaps = 37/352 (10%)

Query: 136 LIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSE 195
           LI +    GR     ++  +MK     P   T+  L+   A++   + +M++++ MK   
Sbjct: 350 LIQVLCDAGRISDAKDVFWKMKKSDQKPDRVTYITLLDKFADNGESQSVMEIWNAMKADG 409

Query: 196 VEPNEVSYCILATAHA-VARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAK---G 251
              N V+Y  +  A   V R++   E + E  +K +    +S      ++ G+L     G
Sbjct: 410 YNDNVVAYTAVIDALCQVGRVFEALEMFDEMKQKGIVPEQYSYNS---LISGFLKADRFG 466

Query: 252 KDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVI 311
             LE         P     ++VL I  +G+  +  +A + +  M+S   +      N+V+
Sbjct: 467 DALELFKYMDIHGPKPNGYTHVLFINYYGKSGESIKAIQRYELMKSKGIVPDVVAGNAVL 526

Query: 312 SVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMK---- 367
               K+G +  A  +  E+   G  P+ ITY  +   C K++  +E  K     ++    
Sbjct: 527 FGLAKSGRLGMAKRVFHELKAMGVSPDTITYTMMIKCCSKASKFDEAVKIFYDMIENNCV 586

Query: 368 --------LITT--KKVRSSTPW----------LETTL----SIIEIFAEKGDVGNAENL 403
                   LI T  K  R    W          LE T     +++     +G V    +L
Sbjct: 587 PDVLVVNSLIDTLYKAGRGDEAWQIFYQLKEMNLEPTDGTYNTLLAGLGREGKVKEVMHL 646

Query: 404 FEELKKANYTKYTFVYNTLIKAYVK-AKINDP-NLLRRMILGGARPDAETYS 453
            EE+  +NY      YNT++    K   +ND  ++L  M   G  PD  +Y+
Sbjct: 647 LEEMYHSNYPPNLITYNTILDCLCKNGAVNDALDMLYSMTTKGCIPDLSSYN 698



 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 78/396 (19%), Positives = 157/396 (39%), Gaps = 45/396 (11%)

Query: 98   YNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMK 157
            YN L+     +G +K  +  +++M    +  + + +N ++      G      ++L  M 
Sbjct: 627  YNTLLAGLGREGKVKEVMHLLEEMYHSNYPPNLITYNTILDCLCKNGAVNDALDMLYSMT 686

Query: 158  ADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYC-ILATAHAVA--- 213
                 P +S+++ ++     +        ++  MK+  + P+  + C IL +   +    
Sbjct: 687  TKGCIPDLSSYNTVIYGLVKEERYNEAFSIFCQMKKVLI-PDYATLCTILPSFVKIGLMK 745

Query: 214  -RLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERI-WATVQELPNVRSKS 271
              L+ + E +++   K+   +  S ++      G L K    + I +A +     +    
Sbjct: 746  EALHIIKEYFLQPGSKTDRSSCHSLME------GILKKAGTEKSIEFAEIIASSGITLDD 799

Query: 272  YVLA--IEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKE 329
            + L   I+   +  +   A EL  + +S      T  YNS+I        ID A GL  E
Sbjct: 800  FFLCPLIKHLCKQKKALEAHELVKKFKSFGVSLKTGSYNSLICGLVDENLIDIAEGLFAE 859

Query: 330  MSMNGCKPNAITYRHLALGCFKSNLVEE-----------GFKALELGMKLITTKKVRSS- 377
            M   GC P+  TY  L     KS  +EE           G+++  +    I +  V+S  
Sbjct: 860  MKELGCGPDEFTYNLLLDAMGKSMRIEEMLKVQEEMHRKGYESTYVTYNTIISGLVKSRR 919

Query: 378  ----------------TPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNT 421
                            +P   T   +++   + G + +AENLF E+ +        +YN 
Sbjct: 920  LEQAIDLYYNLMSQGFSPTPCTYGPLLDGLLKAGRIEDAENLFNEMLEYGCKANCTIYNI 979

Query: 422  LIKAYVKAKINDP--NLLRRMILGGARPDAETYSLL 455
            L+  +  A   +   +L + M+  G  PD ++Y+++
Sbjct: 980  LLNGHRIAGNTEKVCHLFQDMVDQGINPDIKSYTII 1015



 Score = 50.1 bits (118), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 47/227 (20%), Positives = 84/227 (37%), Gaps = 36/227 (15%)

Query: 134 NRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKR 193
           N ++   +  GR      +  ++KA  V+P   T+ +++K  +     +  +K++ DM  
Sbjct: 523 NAVLFGLAKSGRLGMAKRVFHELKAMGVSPDTITYTMMIKCCSKASKFDEAVKIFYDMIE 582

Query: 194 SEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNN-WSTLDVLIILYGYLAKGK 252
           +   P+ +                V  + ++ L K+  G+  W           Y  K  
Sbjct: 583 NNCVPDVL----------------VVNSLIDTLYKAGRGDEAWQIF--------YQLKEM 618

Query: 253 DLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVIS 312
           +LE    T   L           +   GR  +V     L  EM           YN+++ 
Sbjct: 619 NLEPTDGTYNTL-----------LAGLGREGKVKEVMHLLEEMYHSNYPPNLITYNTILD 667

Query: 313 VYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGF 359
             CKNG ++ A  +L  M+  GC P+  +Y  +  G  K     E F
Sbjct: 668 CLCKNGAVNDALDMLYSMTTKGCIPDLSSYNTVIYGLVKEERYNEAF 714



 Score = 49.7 bits (117), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 74/337 (21%), Positives = 138/337 (40%), Gaps = 17/337 (5%)

Query: 36   LRKLQLNKRALEVMEWVIRERPY--RPKELDYSYLLEFTIKNHGISQGEKLFC------C 87
            ++ L   K+ALE  E V + + +    K   Y+ L+   +  + I   E LF       C
Sbjct: 806  IKHLCKQKKALEAHELVKKFKSFGVSLKTGSYNSLICGLVDENLIDIAEGLFAEMKELGC 865

Query: 88   IPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRK 147
             P    +E  YN L+ A      I+  L+  ++M   G+  +Y+ +N +I       R +
Sbjct: 866  GP----DEFTYNLLLDAMGKSMRIEEMLKVQEEMHRKGYESTYVTYNTIISGLVKSRRLE 921

Query: 148  TIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILA 207
               ++   + +   +P   T+  L+        IE    ++++M     + N   Y IL 
Sbjct: 922  QAIDLYYNLMSQGFSPTPCTYGPLLDGLLKAGRIEDAENLFNEMLEYGCKANCTIYNILL 981

Query: 208  TAHAVA-RLYTVAETYVEALEKSMTGN--NWSTLDVLIILYGYLAKGKDLERIWATVQEL 264
              H +A     V   + + +++ +  +  +++ +   +   G L  G    R    +   
Sbjct: 982  NGHRIAGNTEKVCHLFQDMVDQGINPDIKSYTIIIDTLCKAGQLNDGLTYFRQLLEMGLE 1041

Query: 265  PNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKAS 324
            P++   +Y L I+  G+  ++  A  L+ EMQ    +     YNS+I    K G   +A 
Sbjct: 1042 PDL--ITYNLLIDGLGKSKRLEEAVSLFNEMQKKGIVPNLYTYNSLILHLGKAGKAAEAG 1099

Query: 325  GLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKA 361
             + +E+   G KPN  TY  L  G   S   +  + A
Sbjct: 1100 KMYEELLTKGWKPNVFTYNALIRGYSVSGSTDSAYAA 1136


>gi|115450929|ref|NP_001049065.1| Os03g0165100 [Oryza sativa Japonica Group]
 gi|113547536|dbj|BAF10979.1| Os03g0165100 [Oryza sativa Japonica Group]
          Length = 695

 Score = 82.4 bits (202), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 83/350 (23%), Positives = 147/350 (42%), Gaps = 16/350 (4%)

Query: 109 GVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTF 168
           G I+ +L+  K+MR  G     + F+ LI L +  G+       LR+M+   + P    +
Sbjct: 214 GEIEEALKIYKEMRHRGIKPDLVSFSCLIGLFARRGKMDHAMAYLREMRCFGLVPDGVIY 273

Query: 169 HILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEK 228
            +++        +   ++V  +M      P+ V+Y  L       R    AE  +  + +
Sbjct: 274 TMVIGGFCRAGLMSDALRVRDEMVGCGCLPDVVTYNTLLNGLCKERRLLDAEGLLNEMRE 333

Query: 229 SMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSK----SYVLAIEAFGRIAQ 284
                +  T   LI  +GY  +GK L++       + N R +    +Y   I+   R   
Sbjct: 334 RGVPPDLCTFTTLI--HGYCIEGK-LDKALQLFDTMLNQRLRPDIVTYNTLIDGMCRQGD 390

Query: 285 VSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRH 344
           + +A +LW +M S +       Y+ +I  +C+ G ++ A G L EM   G  PN +TY  
Sbjct: 391 LDKANDLWDDMHSREIFPNHVTYSILIDSHCEKGQVEDAFGFLDEMINKGILPNIMTYNS 450

Query: 345 LALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLF 404
           +  G  +S  V +G K L+  M       V   +P L T  ++I  + ++  + +A  L 
Sbjct: 451 IIKGYCRSGNVSKGQKFLQKMM-------VNKVSPDLITYNTLIHGYIKEDKMHDAFKLL 503

Query: 405 EELKKANYTKYTFVYNTLIKAY-VKAKINDPN-LLRRMILGGARPDAETY 452
             ++K         YN LI  + V   + +   +  +M   G  PD  TY
Sbjct: 504 NMMEKEKVQPDVVTYNMLINGFSVHGNVQEAGWIFEKMCAKGIEPDRYTY 553



 Score = 74.7 bits (182), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 71/325 (21%), Positives = 140/325 (43%), Gaps = 12/325 (3%)

Query: 108 KGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVST 167
           +G +  ++ Y+++MR  G     +++  +I      G       +  +M      P V T
Sbjct: 248 RGKMDHAMAYLREMRCFGLVPDGVIYTMVIGGFCRAGLMSDALRVRDEMVGCGCLPDVVT 307

Query: 168 FHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAV-ARLYTVAETYVEAL 226
           ++ L+     +  +     + ++M+   V P+  ++  L   + +  +L    + +   L
Sbjct: 308 YNTLLNGLCKERRLLDAEGLLNEMRERGVPPDLCTFTTLIHGYCIEGKLDKALQLFDTML 367

Query: 227 EKSMTGN--NWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQ 284
            + +  +   ++TL   +   G L K  DL     + +  PN    +Y + I++     Q
Sbjct: 368 NQRLRPDIVTYNTLIDGMCRQGDLDKANDLWDDMHSREIFPN--HVTYSILIDSHCEKGQ 425

Query: 285 VSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRH 344
           V  A     EM +   L     YNS+I  YC++G + K    L++M +N   P+ ITY  
Sbjct: 426 VEDAFGFLDEMINKGILPNIMTYNSIIKGYCRSGNVSKGQKFLQKMMVNKVSPDLITYNT 485

Query: 345 LALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLF 404
           L  G  K + + + FK L     ++  +KV+   P + T   +I  F+  G+V  A  +F
Sbjct: 486 LIHGYIKEDKMHDAFKLL----NMMEKEKVQ---PDVVTYNMLINGFSVHGNVQEAGWIF 538

Query: 405 EELKKANYTKYTFVYNTLIKAYVKA 429
           E++         + Y ++I  +V A
Sbjct: 539 EKMCAKGIEPDRYTYMSMINGHVTA 563



 Score = 58.5 bits (140), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 55/230 (23%), Positives = 98/230 (42%), Gaps = 20/230 (8%)

Query: 234 NWSTLDVLIILYGYLAKGKDLERIWATVQEL------PNVRSKSYVLAIEAFGRIAQVSR 287
           N  TL++++  Y    K  + +++ A + E+      P+V + +  + ++A  R      
Sbjct: 94  NTYTLNIMVHNY---CKALEFDKVDAVISEMEKRCVFPDVVTHN--VMVDARFRAGDAEA 148

Query: 288 AEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLAL 347
           A  L   M S         YNSV+   C++G  DKA  + KEM   G  P+  ++  L  
Sbjct: 149 AMALVDSMVSKGLKPGIVTYNSVLKGLCRSGMWDKAWEVFKEMDDFGVAPDVRSFTILIG 208

Query: 348 GCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEEL 407
           G  +   +EE        +K+    + R   P L +   +I +FA +G + +A     E+
Sbjct: 209 GFCRVGEIEE-------ALKIYKEMRHRGIKPDLVSFSCLIGLFARRGKMDHAMAYLREM 261

Query: 408 KKANYTKYTFVYNTLIKAYVKAKINDPNLLRR--MILGGARPDAETYSLL 455
           +         +Y  +I  + +A +    L  R  M+  G  PD  TY+ L
Sbjct: 262 RCFGLVPDGVIYTMVIGGFCRAGLMSDALRVRDEMVGCGCLPDVVTYNTL 311



 Score = 47.0 bits (110), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 55/277 (19%), Positives = 113/277 (40%), Gaps = 9/277 (3%)

Query: 87  CIPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRR 146
           C+P       L N L   C ++ ++      + +MR  G       F  LI      G+ 
Sbjct: 301 CLPDVVTYNTLLNGL---CKERRLLDAE-GLLNEMRERGVPPDLCTFTTLIHGYCIEGKL 356

Query: 147 KTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCIL 206
                +   M   ++ P + T++ L+       +++    ++ DM   E+ PN V+Y IL
Sbjct: 357 DKALQLFDTMLNQRLRPDIVTYNTLIDGMCRQGDLDKANDLWDDMHSREIFPNHVTYSIL 416

Query: 207 ATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILY---GYLAKGKDLERIWATVQE 263
             +H        A  +++ +       N  T + +I  Y   G ++KG+   +     + 
Sbjct: 417 IDSHCEKGQVEDAFGFLDEMINKGILPNIMTYNSIIKGYCRSGNVSKGQKFLQKMMVNKV 476

Query: 264 LPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKA 323
            P++   +Y   I  + +  ++  A +L   M+  K       YN +I+ +  +G + +A
Sbjct: 477 SPDL--ITYNTLIHGYIKEDKMHDAFKLLNMMEKEKVQPDVVTYNMLINGFSVHGNVQEA 534

Query: 324 SGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFK 360
             + ++M   G +P+  TY  +  G   +   +E F+
Sbjct: 535 GWIFEKMCAKGIEPDRYTYMSMINGHVTAGNSKEAFQ 571



 Score = 43.9 bits (102), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 33/171 (19%), Positives = 85/171 (49%), Gaps = 3/171 (1%)

Query: 44  RALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQGEKLFCCIPKD--YQNELLYNNL 101
           +AL++ + ++ +R  RP  + Y+ L++   +   + +   L+  +     + N + Y+ L
Sbjct: 358 KALQLFDTMLNQR-LRPDIVTYNTLIDGMCRQGDLDKANDLWDDMHSREIFPNHVTYSIL 416

Query: 102 VIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKV 161
           + +  +KG ++ +  ++ +M   G   + + +N +I      G        L++M  +KV
Sbjct: 417 IDSHCEKGQVEDAFGFLDEMINKGILPNIMTYNSIIKGYCRSGNVSKGQKFLQKMMVNKV 476

Query: 162 APHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAV 212
           +P + T++ L+     +  +    K+ + M++ +V+P+ V+Y +L    +V
Sbjct: 477 SPDLITYNTLIHGYIKEDKMHDAFKLLNMMEKEKVQPDVVTYNMLINGFSV 527


>gi|227202654|dbj|BAH56800.1| AT2G41720 [Arabidopsis thaliana]
          Length = 815

 Score = 82.4 bits (202), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 84/395 (21%), Positives = 163/395 (41%), Gaps = 55/395 (13%)

Query: 4   LPRGEPVGSAFQSWM----REGFPVHRGEIFHSINRLRKLQLNKRALEVMEWVIRERPYR 59
           L R E V     SW+    R+ FPV    +   ++R   ++L    + V +W+  ++ Y 
Sbjct: 88  LNRWEEVDGVLNSWVGRFARKNFPV----LIRELSRRGCIEL---CVNVFKWMKIQKNYC 140

Query: 60  PKELDYSYLLEFTIKNHGISQGEKLF------CCIPK---------------------DY 92
            +   Y+ ++    +++ + Q   LF       C P                      + 
Sbjct: 141 ARNDIYNMMIRLHARHNWVDQARGLFFEMQKWSCKPDAETYDALINAHGRAGQWRWAMNL 200

Query: 93  QNELL----------YNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSS 142
            +++L          YNNL+ AC   G  + +LE  KKM   G     +  N ++    S
Sbjct: 201 MDDMLRAAIAPSRSTYNNLINACGSSGNWREALEVCKKMTDNGVGPDLVTHNIVLSAYKS 260

Query: 143 PGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDM--KRSEVEPNE 200
             +     +    MK  KV P  +TF+I++   +        + +++ M  KR+E  P+ 
Sbjct: 261 GRQYSKALSYFELMKGAKVRPDTTTFNIIIYCLSKLGQSSQALDLFNSMREKRAECRPDV 320

Query: 201 VSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWAT 260
           V++  +   ++V           EA+       N  + + L+  Y           +   
Sbjct: 321 VTFTSIMHLYSVKGEIENCRAVFEAMVAEGLKPNIVSYNALMGAYAVHGMSGTALSVLGD 380

Query: 261 VQE---LPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKN 317
           +++   +P+V   SY   + ++GR  Q  +A+E++L M+  ++      YN++I  Y  N
Sbjct: 381 IKQNGIIPDV--VSYTCLLNSYGRSRQPGKAKEVFLMMRKERRKPNVVTYNALIDAYGSN 438

Query: 318 GFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKS 352
           GF+ +A  + ++M  +G KPN ++   L   C +S
Sbjct: 439 GFLAEAVEIFRQMEQDGIKPNVVSVCTLLAACSRS 473



 Score = 65.5 bits (158), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 61/282 (21%), Positives = 125/282 (44%), Gaps = 16/282 (5%)

Query: 94  NELLYNNLVIACLDKGVIKLSLEYMKKMR---VLGHSISYLVFNRLIILNSSPGRRKTIP 150
           N + YN L+ A    G+   +L  +  ++   ++   +SY         +  PG+ K   
Sbjct: 354 NIVSYNALMGAYAVHGMSGTALSVLGDIKQNGIIPDVVSYTCLLNSYGRSRQPGKAK--- 410

Query: 151 NILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAH 210
            +   M+ ++  P+V T++ L+    ++  +   ++++  M++  ++PN VS C L  A 
Sbjct: 411 EVFLMMRKERRKPNVVTYNALIDAYGSNGFLAEAVEIFRQMEQDGIKPNVVSVCTLLAAC 470

Query: 211 AVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSK 270
           + ++     +T + A +      N +  +  I   G      +LE+  A  Q +   + K
Sbjct: 471 SRSKKKVNVDTVLSAAQSRGINLNTAAYNSAI---GSYINAAELEKAIALYQSMRKKKVK 527

Query: 271 ----SYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGL 326
               ++ + I    R+++   A     EM+ +      E Y+SV+  Y K G + +A  +
Sbjct: 528 ADSVTFTILISGSCRMSKYPEAISYLKEMEDLSIPLTKEVYSSVLCAYSKQGQVTEAESI 587

Query: 327 LKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKL 368
             +M M GC+P+ I Y  +       N  E+  KA EL +++
Sbjct: 588 FNQMKMAGCEPDVIAYTSM---LHAYNASEKWGKACELLLEM 626



 Score = 40.0 bits (92), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 41/166 (24%), Positives = 66/166 (39%), Gaps = 7/166 (4%)

Query: 258 WATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKN 317
           W  +Q+    R+  Y + I    R   V +A  L+ EMQ        E Y+++I+ + + 
Sbjct: 132 WMKIQKNYCARNDIYNMMIRLHARHNWVDQARGLFFEMQKWSCKPDAETYDALINAHGRA 191

Query: 318 GFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSS 377
           G    A  L+ +M      P+  TY +L   C  S    E   ALE+  K+         
Sbjct: 192 GQWRWAMNLMDDMLRAAIAPSRSTYNNLINACGSSGNWRE---ALEVCKKMTDN----GV 244

Query: 378 TPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLI 423
            P L T   ++  +        A + FE +K A     T  +N +I
Sbjct: 245 GPDLVTHNIVLSAYKSGRQYSKALSYFELMKGAKVRPDTTTFNIII 290



 Score = 38.5 bits (88), Expect = 6.6,   Method: Compositional matrix adjust.
 Identities = 35/166 (21%), Positives = 69/166 (41%), Gaps = 10/166 (6%)

Query: 292 WLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFK 351
           W+++Q        + YN +I ++ ++ ++D+A GL  EM    CKP+A TY  L     +
Sbjct: 132 WMKIQK-NYCARNDIYNMMIRLHARHNWVDQARGLFFEMQKWSCKPDAETYDALINAHGR 190

Query: 352 SNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKAN 411
           +             M L+      +  P   T  ++I      G+   A  + +++    
Sbjct: 191 AG-------QWRWAMNLMDDMLRAAIAPSRSTYNNLINACGSSGNWREALEVCKKMTDNG 243

Query: 412 YTKYTFVYNTLIKAYVKAKINDPNLLRRMILGGA--RPDAETYSLL 455
                  +N ++ AY   +     L    ++ GA  RPD  T++++
Sbjct: 244 VGPDLVTHNIVLSAYKSGRQYSKALSYFELMKGAKVRPDTTTFNII 289


>gi|9955532|emb|CAC05471.1| putative protein [Arabidopsis thaliana]
          Length = 402

 Score = 82.4 bits (202), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 86/345 (24%), Positives = 161/345 (46%), Gaps = 27/345 (7%)

Query: 3   RLPRGEPVGSAFQSWMREGFPVHRGEIFHSINRLRKLQLNKRALEVMEWVIRERPYRPKE 62
           RLP+     +  + W+ EG  +   E+      LR+ +  K ALE  E  I        +
Sbjct: 65  RLPK-RSATTVLEKWIGEGNQMTINELREISKELRRTRRYKHALEHEESKI-------SD 116

Query: 63  LDYSYLLEFTIKNHGISQGEKLFCCIPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMR 122
            DY+  ++   K  GI   E+ F  +  D +    Y +L+ A       + +    K++ 
Sbjct: 117 ADYASRIDLISKVFGIDAAERYFEGLDIDSKTAETYTSLLHAYAASKQTERAEALFKRI- 175

Query: 123 VLGHSISY--LVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHN 180
           +   S+++  + +N ++ L  S G+ + +P ++  +K  KV+P + T+++ +   A   N
Sbjct: 176 IESDSLTFGAITYNEMMTLYMSVGQVEKVPEVIEVLKQKKVSPDIFTYNLWLSSCAATFN 235

Query: 181 IEGLMKVYSDMKRSEVEPNE--VSYCILATAHAVARLYTVAETY--VEALEKSMTGNNWS 236
           I+ L K+  +M R +   NE  V Y  L + +  +   T AE+   VEA EKS++   W 
Sbjct: 236 IDELRKILEEM-RHDASSNEGWVRYIDLTSIYINSSRVTNAESTLPVEA-EKSISQREWI 293

Query: 237 TLDVLIILYGYLAKGKDLERIWATVQELPNV-RSKSYVLAIEAFGRIAQVSRAEELWLEM 295
           T D L+IL+  L     +++IW +++    +  S+SY+  + ++  +  +  AEE+   +
Sbjct: 294 TYDFLMILHTGLGNKVMIDQIWKSLRNTNQILSSRSYICVLSSYLMLGHLREAEEI---I 350

Query: 296 QSVKQLKATEQYNSVISVYCKNGFIDK-----ASGLLKEMSMNGC 335
              K+ K TE +++   +   N F D      ASG    +  N C
Sbjct: 351 HQWKESKTTE-FDASACLRILNAFRDVGLEGIASGFHLILVHNKC 394


>gi|255661202|gb|ACU25770.1| pentatricopeptide repeat-containing protein [Tamonea boxiana]
          Length = 426

 Score = 82.4 bits (202), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 76/322 (23%), Positives = 154/322 (47%), Gaps = 22/322 (6%)

Query: 98  YNNLVIACLDKGVIKLSLEYMKKM---RVLGHSISYLVFNRLIILNSSPGRRKTIPNILR 154
           Y+ L+     +G+   +L +++KM   RV G  + Y   + LI L+          +I  
Sbjct: 12  YSTLITHFGKEGLFDDALSWLQKMEEDRVPGDLVLY---SNLIELSRKLCDYSRAISIFS 68

Query: 155 QMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVAR 214
           ++K   +AP +  ++ ++ +            + S+M+ + V P+ VSYC L T +   +
Sbjct: 69  RLKRSGIAPDLVAYNSMINVFGKAKLFREARALVSEMRTAGVMPDTVSYCTLLTMYVENQ 128

Query: 215 LYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQEL---PNVRSKS 271
            +  A +    + +     + +T +++I +YG L   K+ ++++ +++++   PNV S +
Sbjct: 129 KFLEALSLFSEMREIQCSFDLTTCNIMIDVYGQLGMAKEADKLFWSMRKMGIEPNVVSYN 188

Query: 272 YVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMS 331
            +L +  +G       A  L+  MQ     +    YNS++ +Y K    +KA+ L++EM 
Sbjct: 189 TLLRV--YGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMVIYGKTLEHEKANNLIQEMQ 246

Query: 332 MNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTL--SIIE 389
             G +PNAITY         S ++    K  +L    +  +K+R S   ++  L  ++I 
Sbjct: 247 DRGIEPNAITY---------STIISIWGKVGKLDRAAMLFQKLRCSGIEIDQVLYQTMIV 297

Query: 390 IFAEKGDVGNAENLFEELKKAN 411
            +   G V +A+ L +ELK+ +
Sbjct: 298 AYERAGLVAHAKRLLQELKRPD 319



 Score = 46.6 bits (109), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 38/156 (24%), Positives = 69/156 (44%), Gaps = 7/156 (4%)

Query: 276 IEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGC 335
           IE   ++   SRA  ++  ++          YNS+I+V+ K     +A  L+ EM   G 
Sbjct: 51  IELSRKLCDYSRAISIFSRLKRSGIAPDLVAYNSMINVFGKAKLFREARALVSEMRTAGV 110

Query: 336 KPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKG 395
            P+ ++Y      C    +  E  K LE  + L +  +    +  L T   +I+++ + G
Sbjct: 111 MPDTVSY------CTLLTMYVENQKFLE-ALSLFSEMREIQCSFDLTTCNIMIDVYGQLG 163

Query: 396 DVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKI 431
               A+ LF  ++K         YNTL++ Y  A++
Sbjct: 164 MAKEADKLFWSMRKMGIEPNVVSYNTLLRVYGDAEL 199


>gi|147862640|emb|CAN81487.1| hypothetical protein VITISV_033285 [Vitis vinifera]
          Length = 1024

 Score = 82.4 bits (202), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 90/434 (20%), Positives = 187/434 (43%), Gaps = 42/434 (9%)

Query: 29  IFHSINRLRKLQLNKRALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQGEKLFCCI 88
           + H + +  K++   +A E+++ ++     +P    +  L+E   + H + +  +L    
Sbjct: 374 LIHGLCKFGKME---KAAEILKGMVT-LGCKPNSRTFCLLIEGYCREHNMGRALELL--- 426

Query: 89  PKDYQNELLYNNLVIACLDKGV----------IKLSLEYMKKMRVLGHSISYLVFNRLII 138
                +E+   NLV + +  G           + L+ + ++KM   G   + +V++ LI+
Sbjct: 427 -----DEMEKRNLVPSAVSYGAMINGLCHCKDLSLANKLLEKMTFSGLKPNVVVYSILIM 481

Query: 139 LNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEP 198
             +S GR +    +L  M    VAP +  ++ ++   +    +E       +++   ++P
Sbjct: 482 AYASEGRIEEARRLLDGMSCSGVAPDIFCYNAIISCLSKAGKMEEASTYLLEIQGRGLKP 541

Query: 199 NEVSYCILATAHA-VARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLE-- 255
           + V++      ++   ++   A+ + E L+  +  NN       +++ G+   G  +E  
Sbjct: 542 DAVTFGAFILGYSKTGKMTEAAKYFDEMLDHGLMPNNPL---YTVLINGHFKAGNLMEAL 598

Query: 256 ---RIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVIS 312
              R    +  LP+V++ S    I    +  +V  A +++ E++    +     Y+S+IS
Sbjct: 599 SIFRRLHALGVLPDVQTCSAF--IHGLLKNGRVQEALKVFSELKEKGLVPDVFTYSSLIS 656

Query: 313 VYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTK 372
            +CK G ++KA  L  EM + G  PN   Y  L  G  KS  ++          KL    
Sbjct: 657 GFCKQGEVEKAFELHDEMCLKGIAPNIFIYNALVDGLCKSGDIQR-------ARKLFDGM 709

Query: 373 KVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKIN 432
             +   P   T  ++I+ + +  +V  A +LF E+       ++FVYN L+    K    
Sbjct: 710 PEKGLEPDSVTYSTMIDGYCKSENVAEAFSLFHEMPSKGVQPHSFVYNALVHGCCKEGDM 769

Query: 433 DP--NLLRRMILGG 444
           +   NL R M+  G
Sbjct: 770 EKAMNLFREMLQKG 783



 Score = 69.3 bits (168), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 89/390 (22%), Positives = 157/390 (40%), Gaps = 39/390 (10%)

Query: 101 LVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADK 160
           L+   + +G I   L     M   G  I+ + +N LI      G+ +    IL+ M    
Sbjct: 339 LIDGFMREGDIDEVLRIKDVMVSCGIPINLITYNVLIHGLCKFGKMEKAAEILKGMVTLG 398

Query: 161 VAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAE 220
             P+  TF +L++    +HN+   +++  +M++  + P+ VSY  +       +  ++A 
Sbjct: 399 CKPNSRTFCLLIEGYCREHNMGRALELLDEMEKRNLVPSAVSYGAMINGLCHCKDLSLAN 458

Query: 221 TYVEALEKSMTGNNWSTLDVLIILY---GYLAKGKDLERIWATVQELPNVRSKSYVLAIE 277
             +E +  S    N     +LI+ Y   G + + + L    +     P++    Y   I 
Sbjct: 459 KLLEKMTFSGLKPNVVVYSILIMAYASEGRIEEARRLLDGMSCSGVAPDIF--CYNAIIS 516

Query: 278 AFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKP 337
              +  ++  A    LE+Q          + + I  Y K G + +A+    EM  +G  P
Sbjct: 517 CLSKAGKMEEASTYLLEIQGRGLKPDAVTFGAFILGYSKTGKMTEAAKYFDEMLDHGLMP 576

Query: 338 NAITYRHLALGCFKS-NLVE--EGFKALE-LG------------------------MKLI 369
           N   Y  L  G FK+ NL+E    F+ L  LG                        +K+ 
Sbjct: 577 NNPLYTVLINGHFKAGNLMEALSIFRRLHALGVLPDVQTCSAFIHGLLKNGRVQEALKVF 636

Query: 370 TTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKA 429
           +  K +   P + T  S+I  F ++G+V  A  L +E+         F+YN L+    K+
Sbjct: 637 SELKEKGLVPDVFTYSSLISGFCKQGEVEKAFELHDEMCLKGIAPNIFIYNALVDGLCKS 696

Query: 430 KINDPNLLRRMILG----GARPDAETYSLL 455
              D    R++  G    G  PD+ TYS +
Sbjct: 697 --GDIQRARKLFDGMPEKGLEPDSVTYSTM 724



 Score = 68.6 bits (166), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 74/312 (23%), Positives = 135/312 (43%), Gaps = 19/312 (6%)

Query: 151 NILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAH 210
           +I R++ A  V P V T    +     +  ++  +KV+S++K   + P+  +Y  L +  
Sbjct: 599 SIFRRLHALGVLPDVQTCSAFIHGLLKNGRVQEALKVFSELKEKGLVPDVFTYSSLISGF 658

Query: 211 A-VARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPN--- 266
                +    E + E   K +  N +    +   L   L K  D++R       +P    
Sbjct: 659 CKQGEVEKAFELHDEMCLKGIAPNIF----IYNALVDGLCKSGDIQRARKLFDGMPEKGL 714

Query: 267 -VRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASG 325
              S +Y   I+ + +   V+ A  L+ EM S      +  YN+++   CK G ++KA  
Sbjct: 715 EPDSVTYSTMIDGYCKSENVAEAFSLFHEMPSKGVQPHSFVYNALVHGCCKEGDMEKAMN 774

Query: 326 LLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTL 385
           L +EM   G     +++  L  G  KS  ++E   A +L  ++I     +   P   T  
Sbjct: 775 LFREMLQKG-FATTLSFNTLIDGYCKSCKIQE---ASQLFQEMIA----KQIMPDHVTYT 826

Query: 386 SIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKINDP--NLLRRMILG 443
           ++I+   + G +  A  LF+E+++ N    T  Y +L+  Y K   +     L  +M+  
Sbjct: 827 TVIDWHCKAGKMEEANLLFKEMQERNLIVDTVTYTSLMYGYNKLGQSSEVFALFEKMVAK 886

Query: 444 GARPDAETYSLL 455
           G +PD  TY L+
Sbjct: 887 GVKPDEVTYGLV 898



 Score = 52.8 bits (125), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 53/261 (20%), Positives = 111/261 (42%), Gaps = 6/261 (2%)

Query: 106 LDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHV 165
           L  G ++ +L+   +++  G       ++ LI      G  +    +  +M    +AP++
Sbjct: 624 LKNGRVQEALKVFSELKEKGLVPDVFTYSSLISGFCKQGEVEKAFELHDEMCLKGIAPNI 683

Query: 166 STFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEA 225
             ++ L+       +I+   K++  M    +EP+ V+Y  +   +  +    VAE +   
Sbjct: 684 FIYNALVDGLCKSGDIQRARKLFDGMPEKGLEPDSVTYSTMIDGYCKSE--NVAEAFSLF 741

Query: 226 LEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPN---VRSKSYVLAIEAFGRI 282
            E    G    +     +++G   +G D+E+     +E+       + S+   I+ + + 
Sbjct: 742 HEMPSKGVQPHSFVYNALVHGCCKEG-DMEKAMNLFREMLQKGFATTLSFNTLIDGYCKS 800

Query: 283 AQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITY 342
            ++  A +L+ EM + + +     Y +VI  +CK G +++A+ L KEM       + +TY
Sbjct: 801 CKIQEASQLFQEMIAKQIMPDHVTYTTVIDWHCKAGKMEEANLLFKEMQERNLIVDTVTY 860

Query: 343 RHLALGCFKSNLVEEGFKALE 363
             L  G  K     E F   E
Sbjct: 861 TSLMYGYNKLGQSSEVFALFE 881



 Score = 50.8 bits (120), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 67/343 (19%), Positives = 138/343 (40%), Gaps = 29/343 (8%)

Query: 98  YNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMK 157
           Y++L+     +G ++ + E   +M + G + +  ++N L+      G  +    +   M 
Sbjct: 651 YSSLISGFCKQGEVEKAFELHDEMCLKGIAPNIFIYNALVDGLCKSGDIQRARKLFDGMP 710

Query: 158 ADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVAR--- 214
              + P   T+  ++       N+     ++ +M    V+P+   Y   A  H   +   
Sbjct: 711 EKGLEPDSVTYSTMIDGYCKSENVAEAFSLFHEMPSKGVQPHSFVYN--ALVHGCCKEGD 768

Query: 215 LYTVAETYVEALEKSMTGNNWSTLDVLIILYGY-----LAKGKDLERIWATVQELPNVRS 269
           +      + E L+K       +TL    ++ GY     + +   L +     Q +P+   
Sbjct: 769 MEKAMNLFREMLQKGFA----TTLSFNTLIDGYCKSCKIQEASQLFQEMIAKQIMPD--H 822

Query: 270 KSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKE 329
            +Y   I+   +  ++  A  L+ EMQ    +  T  Y S++  Y K G   +   L ++
Sbjct: 823 VTYTTVIDWHCKAGKMEEANLLFKEMQERNLIVDTVTYTSLMYGYNKLGQSSEVFALFEK 882

Query: 330 MSMNGCKPNAITYRHLALG-CFKSNLVEEGFKALE--LGMKLITTKKVRSSTPWLETTLS 386
           M   G KP+ +TY  +    C + NLV E FK  +  +G  ++T   +            
Sbjct: 883 MVAKGVKPDEVTYGLVIYAHCKEDNLV-EAFKLRDEVVGKGMLTKGTIHD---------L 932

Query: 387 IIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKA 429
           +I    ++ D+  A  L +E+ +          NTL++++ +A
Sbjct: 933 LITALCKREDLTEASKLLDEMGELGLKPSLAACNTLVRSFHEA 975



 Score = 44.7 bits (104), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 46/192 (23%), Positives = 78/192 (40%), Gaps = 19/192 (9%)

Query: 271 SYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATE-QYNSVISVYCKNGFIDKASGLLKE 329
           +Y   + A  +   +  A+ + +EM   K L   E  Y+ VI   C+ G ID+A  L + 
Sbjct: 230 TYTYLVGALCKTGDLRGAKRVLIEMDE-KGLNPNEFIYSLVIEGMCQVGDIDEAVELKRS 288

Query: 330 MSMNGCKPNAITYRHLALGCFKSNLVEEGFKALE----LGMKLITTKKVRSSTPWLETTL 385
           M   G  PN  TY  +  G  ++  + E     E     G+K           P      
Sbjct: 289 MGEKGLVPNTYTYTIITAGLCRAKRMNEAKLTFEEMQKTGLK-----------PDYNACS 337

Query: 386 SIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVK-AKIND-PNLLRRMILG 443
           ++I+ F  +GD+     + + +           YN LI    K  K+     +L+ M+  
Sbjct: 338 ALIDGFMREGDIDEVLRIKDVMVSCGIPINLITYNVLIHGLCKFGKMEKAAEILKGMVTL 397

Query: 444 GARPDAETYSLL 455
           G +P++ T+ LL
Sbjct: 398 GCKPNSRTFCLL 409



 Score = 43.5 bits (101), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 72/355 (20%), Positives = 145/355 (40%), Gaps = 19/355 (5%)

Query: 60   PKELDYSYLLEFTIKNHGISQGEKLFCCIPKD--YQNELLYNNLVIACLDKGVIKLSLEY 117
            P    Y+ L++   K+  I +  KLF  +P+     + + Y+ ++        +  +   
Sbjct: 681  PNIFIYNALVDGLCKSGDIQRARKLFDGMPEKGLEPDSVTYSTMIDGYCKSENVAEAFSL 740

Query: 118  MKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEAN 177
              +M   G      V+N L+      G  +   N+ R+M     A  +S F+ L+     
Sbjct: 741  FHEMPSKGVQPHSFVYNALVHGCCKEGDMEKAMNLFREMLQKGFATTLS-FNTLIDGYCK 799

Query: 178  DHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVA-RLYTVAETYVEALEKSMTGNNWS 236
               I+   +++ +M   ++ P+ V+Y  +   H  A ++      + E  E+++      
Sbjct: 800  SCKIQEASQLFQEMIAKQIMPDHVTYTTVIDWHCKAGKMEEANLLFKEMQERNLI---VD 856

Query: 237  TLDVLIILYGYLAKGKDLERIWATVQELPNVRSK----SYVLAIEAFGRIAQVSRAEELW 292
            T+    ++YGY   G+  E ++A  +++     K    +Y L I A  +   +  A +L 
Sbjct: 857  TVTYTSLMYGYNKLGQSSE-VFALFEKMVAKGVKPDEVTYGLVIYAHCKEDNLVEAFKLR 915

Query: 293  LEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKS 352
             E+     L     ++ +I+  CK   + +AS LL EM   G KP+      L     ++
Sbjct: 916  DEVVGKGMLTKGTIHDLLITALCKREDLTEASKLLDEMGELGLKPSLAACNTLVRSFHEA 975

Query: 353  NLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEEL 407
              ++E  +  E G+K +         P   T + ++       D  +A NL ++L
Sbjct: 976  GKMDEATRVFE-GVKSLGL------VPDTTTLIDLVNGNLNDTDSEDARNLIKQL 1023


>gi|334183590|ref|NP_176479.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75179661|sp|Q9LQ16.1|PPR94_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g62910
 gi|8493578|gb|AAF75801.1|AC011000_4 Contains a RepB PF|01051 protein domain and multiple PPR PF|01535
           repeats [Arabidopsis thaliana]
 gi|332195899|gb|AEE34020.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 632

 Score = 82.4 bits (202), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 93/410 (22%), Positives = 173/410 (42%), Gaps = 20/410 (4%)

Query: 55  ERPYRPKELDYSYLLEFTIKNHGISQGEKLFC-CIPKDYQNELL-YNNLVIACLDKGVIK 112
           E  Y+P    ++ L+     ++  S+   L    + +  Q +L+ Y  +V     +G I 
Sbjct: 181 EMGYKPDTFTFTTLIHGLFLHNKASEAVALVDQMVQRGCQPDLVTYGTVVNGLCKRGDID 240

Query: 113 LSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILM 172
           L+L  +KKM         +++N +I             N+  +M    + P V T+  L+
Sbjct: 241 LALSLLKKMEKGKIEADVVIYNTIIDGLCKYKHMDDALNLFTEMDNKGIRPDVFTYSSLI 300

Query: 173 KIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAV-ARLYTVAETYVEALEKSMT 231
               N        ++ SDM   ++ PN V++  L  A     +L    + Y E +++S+ 
Sbjct: 301 SCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSID 360

Query: 232 GN--NWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAE 289
            +   +S+L     ++  L + K +  +  +    PNV   +Y   I+ F +  +V    
Sbjct: 361 PDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNV--VTYSTLIKGFCKAKRVEEGM 418

Query: 290 ELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGC 349
           EL+ EM     +  T  Y ++I  + +    D A  + K+M   G  PN +TY  L  G 
Sbjct: 419 ELFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSVGVHPNILTYNILLDGL 478

Query: 350 FKSNLVEEGFKALELGMKLITTKKVRSST--PWLETTLSIIEIFAEKGDVGNAENLFEEL 407
            K+          +L   ++  + ++ ST  P + T   +IE   + G V +   LF  L
Sbjct: 479 CKNG---------KLAKAMVVFEYLQRSTMEPDIYTYNIMIEGMCKAGKVEDGWELFCNL 529

Query: 408 KKANYTKYTFVYNTLIKAYVK--AKINDPNLLRRMILGGARPDAETYSLL 455
                +     YNT+I  + +  +K    +LL++M   G  P++ TY+ L
Sbjct: 530 SLKGVSPNVIAYNTMISGFCRKGSKEEADSLLKKMKEDGPLPNSGTYNTL 579



 Score = 67.4 bits (163), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 52/187 (27%), Positives = 83/187 (44%), Gaps = 9/187 (4%)

Query: 271 SYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEM 330
           +Y + I  F R +Q+S A  +  +M  +         +S+++ YC +  I  A  L+ +M
Sbjct: 120 TYSIFINCFCRRSQLSLALAVLAKMMKLGYEPDIVTLSSLLNGYCHSKRISDAVALVDQM 179

Query: 331 SMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEI 390
              G KP+  T+  L  G F  N   E        + L+     R   P L T  +++  
Sbjct: 180 VEMGYKPDTFTFTTLIHGLFLHNKASE-------AVALVDQMVQRGCQPDLVTYGTVVNG 232

Query: 391 FAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKINDP--NLLRRMILGGARPD 448
             ++GD+  A +L ++++K        +YNT+I    K K  D   NL   M   G RPD
Sbjct: 233 LCKRGDIDLALSLLKKMEKGKIEADVVIYNTIIDGLCKYKHMDDALNLFTEMDNKGIRPD 292

Query: 449 AETYSLL 455
             TYS L
Sbjct: 293 VFTYSSL 299



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 68/333 (20%), Positives = 137/333 (41%), Gaps = 16/333 (4%)

Query: 129 SYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVY 188
           S + FN+L+   +   + + + ++  QM+   ++  + T+ I +        +   + V 
Sbjct: 82  SIVEFNKLLSAVAKMNKFELVISLGEQMQTLGISHDLYTYSIFINCFCRRSQLSLALAVL 141

Query: 189 SDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYL 248
           + M +   EP+ V+   L   +  ++  + A   V+ + +   G    T     +++G  
Sbjct: 142 AKMMKLGYEPDIVTLSSLLNGYCHSKRISDAVALVDQMVE--MGYKPDTFTFTTLIHGLF 199

Query: 249 AKGKDLERIWATVQELPNVRSK----SYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKAT 304
              K  E + A V ++     +    +Y   +    +   +  A  L  +M+  K     
Sbjct: 200 LHNKASEAV-ALVDQMVQRGCQPDLVTYGTVVNGLCKRGDIDLALSLLKKMEKGKIEADV 258

Query: 305 EQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALEL 364
             YN++I   CK   +D A  L  EM   G +P+  TY  L + C  +      +     
Sbjct: 259 VIYNTIIDGLCKYKHMDDALNLFTEMDNKGIRPDVFTYSSL-ISCLCN------YGRWSD 311

Query: 365 GMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIK 424
             +L++    R   P + T  ++I+ F ++G +  AE L++E+ K +     F Y++LI 
Sbjct: 312 ASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLIN 371

Query: 425 AYVKAKIND--PNLLRRMILGGARPDAETYSLL 455
            +      D   ++   MI     P+  TYS L
Sbjct: 372 GFCMHDRLDEAKHMFELMISKDCFPNVVTYSTL 404


>gi|357125354|ref|XP_003564359.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09900-like [Brachypodium distachyon]
          Length = 665

 Score = 82.4 bits (202), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 90/413 (21%), Positives = 174/413 (42%), Gaps = 35/413 (8%)

Query: 58  YRPKELDYSYLLEFTIKNHGISQGEKLFC------CIPKDYQNELLYNNLVIACLDKGVI 111
           ++P  + Y+ +L+           E LFC      C+P    NE+ ++ LV      G++
Sbjct: 238 FQPDTVSYTTVLKGLCAAKRWEDVEVLFCEMVENNCVP----NEVTFDMLVRFFCRGGMV 293

Query: 112 KLSLEYMKKMRVLGHSISYLVFNRLIILNS--SPGRRKTIPNILRQMKADKVAPHVSTFH 169
           + ++E + +M   G + +  + N  I++NS    GR       L  M +   +P   ++ 
Sbjct: 294 ERAIEVLDRMSEHGCTANTTLCN--IVINSICKQGRVDDAFEFLNNMGSYGCSPDTISYT 351

Query: 170 ILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSY----CILATAHAVARLYTVAETYVEA 225
            ++K        E   ++ ++M R    PNEV++    CIL     + +   + E   E 
Sbjct: 352 TVLKGLCRAGRWEDAKELLNEMVRKNCPPNEVTFNTFICILCQKGLIDQAILLIEQMPE- 410

Query: 226 LEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELP-NVRSKSYVLAIEAFGRIAQ 284
                 G +   +    ++ G+  +G+ ++        LP    + +Y   +       +
Sbjct: 411 -----YGCSVGIVTYNALVNGFCVQGR-VDSALELFNSLPCEPNTITYTTLLTGLCHAER 464

Query: 285 VSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRH 344
           +  A EL  EM           +N ++S +C+ GF+++A  L+++M  +GC PN IT+  
Sbjct: 465 LDAAAELLAEMMQNDCPLNVVTFNVLVSFFCQKGFVEEAIELVQQMMEHGCTPNLITFNT 524

Query: 345 LALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLF 404
           L  G  +    EE   ALEL   L+ +K +   T    T  SI+++ + +  +  A  +F
Sbjct: 525 LLDGITEDCNSEE---ALELLHGLV-SKGISLDTI---TYSSIVDVLSREDRIEEAVQMF 577

Query: 405 EELKKANYTKYTFVYNTLIKAYVKAKINDP--NLLRRMILGGARPDAETYSLL 455
             ++         +YN ++ A  K    D   +    M+     P+  TY +L
Sbjct: 578 HAVQDMGMRPKAVMYNKILSALCKRCETDRAIDFFAHMVSNSCMPNESTYVIL 630



 Score = 64.7 bits (156), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 74/348 (21%), Positives = 130/348 (37%), Gaps = 53/348 (15%)

Query: 125 GHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGL 184
           G  +    +N L+      GR      ++  M    V P   T+  L++   +   +   
Sbjct: 100 GAPVDVFAYNTLVAGYCRYGRLDAARRLIASMP---VPPDAYTYTPLIRGLCDRGRVGDA 156

Query: 185 MKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLI-- 242
           + +  DM R E +P+ V+Y +L  A   +  +  A   ++ +       N  T +V+I  
Sbjct: 157 LSLLDDMLRRECQPSVVTYTVLLEAVCKSSGFGQAMKVLDEMRAKGCTPNIVTYNVIING 216

Query: 243 --------------------------ILYGYLAKGKDLERIWATVQEL----------PN 266
                                     + Y  + KG    + W  V+ L          PN
Sbjct: 217 MCREDRVDDARQILNRLSSYGFQPDTVSYTTVLKGLCAAKRWEDVEVLFCEMVENNCVPN 276

Query: 267 VRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGL 326
               ++ + +  F R   V RA E+   M        T   N VI+  CK G +D A   
Sbjct: 277 --EVTFDMLVRFFCRGGMVERAIEVLDRMSEHGCTANTTLCNIVINSICKQGRVDDAFEF 334

Query: 327 LKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTL- 385
           L  M   GC P+ I+Y  +  G  ++   E+         K +  + VR + P  E T  
Sbjct: 335 LNNMGSYGCSPDTISYTTVLKGLCRAGRWEDA--------KELLNEMVRKNCPPNEVTFN 386

Query: 386 SIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAY-VKAKIN 432
           + I I  +KG +  A  L E++ +   +     YN L+  + V+ +++
Sbjct: 387 TFICILCQKGLIDQAILLIEQMPEYGCSVGIVTYNALVNGFCVQGRVD 434



 Score = 59.7 bits (143), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 53/279 (18%), Positives = 113/279 (40%), Gaps = 30/279 (10%)

Query: 94  NELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNIL 153
           NE+ +N  +     KG+I  ++  +++M   G S+  + +N L+      GR  +   + 
Sbjct: 381 NEVTFNTFICILCQKGLIDQAILLIEQMPEYGCSVGIVTYNALVNGFCVQGRVDSALELF 440

Query: 154 RQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVA 213
             +  +   P+  T+  L+    +   ++   ++ ++M +++   N V++ +L +     
Sbjct: 441 NSLPCE---PNTITYTTLLTGLCHAERLDAAAELLAEMMQNDCPLNVVTFNVLVSFFCQK 497

Query: 214 RLYTVAETYVEALEKSMTGNNWSTLDVLI--------------ILYGYLAKGKDLERIWA 259
                A   V+ + +     N  T + L+              +L+G ++KG  L+ I  
Sbjct: 498 GFVEEAIELVQQMMEHGCTPNLITFNTLLDGITEDCNSEEALELLHGLVSKGISLDTI-- 555

Query: 260 TVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGF 319
                      +Y   ++   R  ++  A +++  +Q +        YN ++S  CK   
Sbjct: 556 -----------TYSSIVDVLSREDRIEEAVQMFHAVQDMGMRPKAVMYNKILSALCKRCE 604

Query: 320 IDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEG 358
            D+A      M  N C PN  TY  L  G  +  L++E 
Sbjct: 605 TDRAIDFFAHMVSNSCMPNESTYVILIEGLAREGLLKEA 643



 Score = 42.7 bits (99), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 38/186 (20%), Positives = 82/186 (44%), Gaps = 11/186 (5%)

Query: 271 SYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEM 330
           +Y + +EA  + +   +A ++  EM++         YN +I+  C+   +D A  +L  +
Sbjct: 174 TYTVLLEAVCKSSGFGQAMKVLDEMRAKGCTPNIVTYNVIINGMCREDRVDDARQILNRL 233

Query: 331 SMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLS-IIE 389
           S  G +P+ ++Y  +  G   +   E+        ++++  + V ++    E T   ++ 
Sbjct: 234 SSYGFQPDTVSYTTVLKGLCAAKRWED--------VEVLFCEMVENNCVPNEVTFDMLVR 285

Query: 390 IFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVK-AKINDP-NLLRRMILGGARP 447
            F   G V  A  + + + +   T  T + N +I +  K  +++D    L  M   G  P
Sbjct: 286 FFCRGGMVERAIEVLDRMSEHGCTANTTLCNIVINSICKQGRVDDAFEFLNNMGSYGCSP 345

Query: 448 DAETYS 453
           D  +Y+
Sbjct: 346 DTISYT 351


>gi|357473123|ref|XP_003606846.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355507901|gb|AES89043.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 624

 Score = 82.4 bits (202), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 83/363 (22%), Positives = 154/363 (42%), Gaps = 12/363 (3%)

Query: 94  NELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNIL 153
           N + YN ++     +G  + + +  K M+          +N  I       R +    +L
Sbjct: 251 NVVTYNTVINGYCLRGKFEAASKIFKTMKDKNLKPDCYTYNSFISRLCKERRIEEASGVL 310

Query: 154 RQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVA 213
            ++    + P+  T++ L+    N  +++       +M    +  +  +Y +L  A  + 
Sbjct: 311 CKLLESGLVPNAVTYNALIDGCCNKGDLDKAFAYRDEMMNRGIVASVFTYNLLIHALFLE 370

Query: 214 RLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRS--KS 271
           +    AE  ++ + +     +  T ++ I  Y      K    ++  + E  N+R   ++
Sbjct: 371 KRIEEAEDMIKEMREKGVEPDVVTYNIQINGYCRCGNAKKALSLFDEMVE-KNIRPTVET 429

Query: 272 YVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMS 331
           Y   I+ FG+  ++S AEE + +      L     +N++I  +C NG ID+A  LLKEM 
Sbjct: 430 YTSLIDVFGKRNRMSEAEEKFKKSIKEGMLPDIIMFNALIDGHCVNGNIDRAFQLLKEMD 489

Query: 332 MNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIF 391
                P+ +T+  L  G  +   VEE         KL+   K R   P   +  ++I  +
Sbjct: 490 NAKVVPDEVTFNTLMQGYCRERKVEE-------AKKLLDEMKERGIKPDHISYNTLISGY 542

Query: 392 AEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKIND--PNLLRRMILGGARPDA 449
           +++GD+ +A  +F+E+    +      YN LI+ Y K    D    LLR M   G  PD 
Sbjct: 543 SKRGDMKDALEVFDEMLSLGFDPTLLTYNALIQGYSKIGEADHAEELLREMQSKGITPDD 602

Query: 450 ETY 452
            TY
Sbjct: 603 STY 605



 Score = 56.2 bits (134), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 65/337 (19%), Positives = 128/337 (37%), Gaps = 54/337 (16%)

Query: 52  VIRERPYRPKELDYSYLLEFTIKNHGISQGEKLFCCIPKD--YQNELLYNNLVIACLDKG 109
            ++++  +P    Y+  +    K   I +   + C + +     N + YN L+  C +KG
Sbjct: 277 TMKDKNLKPDCYTYNSFISRLCKERRIEEASGVLCKLLESGLVPNAVTYNALIDGCCNKG 336

Query: 110 VIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFH 169
            +  +  Y  +M   G   S   +N LI       R +   +++++M+   V P V T++
Sbjct: 337 DLDKAFAYRDEMMNRGIVASVFTYNLLIHALFLEKRIEEAEDMIKEMREKGVEPDVVTYN 396

Query: 170 ILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAV-ARLYTVAETYVEALEK 228
           I +       N +  + ++ +M    + P   +Y  L        R+    E + +++++
Sbjct: 397 IQINGYCRCGNAKKALSLFDEMVEKNIRPTVETYTSLIDVFGKRNRMSEAEEKFKKSIKE 456

Query: 229 SMTGNNWSTLDVLIILYGYLAKGK----DLERIWATVQELPNVR---------------- 268
            M  +        II++  L  G     +++R +  ++E+ N +                
Sbjct: 457 GMLPD--------IIMFNALIDGHCVNGNIDRAFQLLKEMDNAKVVPDEVTFNTLMQGYC 508

Query: 269 -----------------------SKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATE 305
                                    SY   I  + +   +  A E++ EM S+       
Sbjct: 509 RERKVEEAKKLLDEMKERGIKPDHISYNTLISGYSKRGDMKDALEVFDEMLSLGFDPTLL 568

Query: 306 QYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITY 342
            YN++I  Y K G  D A  LL+EM   G  P+  TY
Sbjct: 569 TYNALIQGYSKIGEADHAEELLREMQSKGITPDDSTY 605



 Score = 43.1 bits (100), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 39/178 (21%), Positives = 74/178 (41%), Gaps = 30/178 (16%)

Query: 307 YNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALG-CFKS------------- 352
           +N +I++ C+ G   KA   +  M + G KPN +TY  +  G C +              
Sbjct: 220 FNIMINILCREGKWKKAKDFIGHMEVYGVKPNVVTYNTVINGYCLRGKFEAASKIFKTMK 279

Query: 353 --NLVEEGFKALELGMKLITTKKVRSST------------PWLETTLSIIEIFAEKGDVG 398
             NL  + +       +L   +++  ++            P   T  ++I+    KGD+ 
Sbjct: 280 DKNLKPDCYTYNSFISRLCKERRIEEASGVLCKLLESGLVPNAVTYNALIDGCCNKGDLD 339

Query: 399 NAENLFEELKKANYTKYTFVYNTLIKA-YVKAKINDP-NLLRRMILGGARPDAETYSL 454
            A    +E+         F YN LI A +++ +I +  ++++ M   G  PD  TY++
Sbjct: 340 KAFAYRDEMMNRGIVASVFTYNLLIHALFLEKRIEEAEDMIKEMREKGVEPDVVTYNI 397


>gi|358347566|ref|XP_003637827.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355503762|gb|AES84965.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 639

 Score = 82.4 bits (202), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 108/433 (24%), Positives = 178/433 (41%), Gaps = 60/433 (13%)

Query: 36  LRKLQLN---KRALEVMEWVIRERPYRPKELDYSYLLEFTIKN-------HGISQGEKLF 85
           LR L LN   K AL   + VIR+R +   ++ Y  L+    K+         + + E L 
Sbjct: 130 LRGLCLNGKVKEALNFHDHVIRKR-FHLDQVSYGTLINGLCKSGETRAALQLLRKIEGLL 188

Query: 86  CCIPKDYQNELLYNNLVIA-CLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPG 144
              P    + ++Y  ++ + C DK VI  + +   +M V     + + FN LI      G
Sbjct: 189 LVRP----DVIMYTAIIDSFCKDKLVID-AYDLYSEMIVKKIYPNVVTFNSLIYGFCIVG 243

Query: 145 RRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYC 204
           + K    +L +M  + V P+V TF+IL+     +  ++    V S M +  VEPN V+Y 
Sbjct: 244 QLKEAVGLLNEMSLNNVNPNVYTFNILIDGLCKEGEVKKATSVLSVMIKQGVEPNVVTYT 303

Query: 205 ILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQEL 264
            L   +     + V E                           + K K +    +     
Sbjct: 304 SLMDGY-----FLVKE---------------------------VNKAKHVFNTISLRGVT 331

Query: 265 PNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKAS 324
           PNV S  Y + I    +   V  A +L+ EM        T  Y+S+I   CK+G I    
Sbjct: 332 PNVHS--YSVMINGLCKNKMVDEAVKLFKEMHLKNMTPNTVTYSSLIDGLCKSGRISDVW 389

Query: 325 GLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETT 384
            L+ E++  G   N ITY  L  G  K++ V++        + L+T  K     P + T 
Sbjct: 390 DLIDEINNRGQPANIITYNSLLNGLCKNHQVDKA-------IALLTKMKDEGIQPDMSTY 442

Query: 385 LSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKINDP--NLLRRMIL 442
            ++++   + G + +A+ ++++L    Y     +Y  +I    K    D   +LL +M  
Sbjct: 443 TTLVDGLCKNGRLKDAQRIYQDLLCKGYPLNIRMYTVMINGLCKEGFFDEALSLLSQMED 502

Query: 443 GGARPDAETYSLL 455
            G  PDA TY  L
Sbjct: 503 NGCMPDAVTYETL 515



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 78/361 (21%), Positives = 147/361 (40%), Gaps = 42/361 (11%)

Query: 33  INRLRKLQLNKRALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQGEKLFC--CIPK 90
           IN L K    + AL+++  +      RP  + Y+ +++   K+  +     L+    + K
Sbjct: 165 INGLCKSGETRAALQLLRKIEGLLLVRPDVIMYTAIIDSFCKDKLVIDAYDLYSEMIVKK 224

Query: 91  DYQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIP 150
            Y N + +N+L+      G +K ++  + +M +   + +   FN LI      G  K   
Sbjct: 225 IYPNVVTFNSLIYGFCIVGQLKEAVGLLNEMSLNNVNPNVYTFNILIDGLCKEGEVKKAT 284

Query: 151 NILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAH 210
           ++L  M    V P+V T+  LM        +     V++ +    V PN  SY ++    
Sbjct: 285 SVLSVMIKQGVEPNVVTYTSLMDGYFLVKEVNKAKHVFNTISLRGVTPNVHSYSVMINGL 344

Query: 211 AVARLYTVA-ETYVEALEKSMTGNN-------------------WSTLDVL--------I 242
              ++   A + + E   K+MT N                    W  +D +        I
Sbjct: 345 CKNKMVDEAVKLFKEMHLKNMTPNTVTYSSLIDGLCKSGRISDVWDLIDEINNRGQPANI 404

Query: 243 ILYGYLAKG----KDLERIWATVQEL------PNVRSKSYVLAIEAFGRIAQVSRAEELW 292
           I Y  L  G      +++  A + ++      P++   +Y   ++   +  ++  A+ ++
Sbjct: 405 ITYNSLLNGLCKNHQVDKAIALLTKMKDEGIQPDM--STYTTLVDGLCKNGRLKDAQRIY 462

Query: 293 LEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKS 352
            ++           Y  +I+  CK GF D+A  LL +M  NGC P+A+TY  L    FK+
Sbjct: 463 QDLLCKGYPLNIRMYTVMINGLCKEGFFDEALSLLSQMEDNGCMPDAVTYETLISALFKN 522

Query: 353 N 353
           N
Sbjct: 523 N 523


>gi|255546465|ref|XP_002514292.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223546748|gb|EEF48246.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 608

 Score = 82.0 bits (201), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 100/419 (23%), Positives = 180/419 (42%), Gaps = 31/419 (7%)

Query: 55  ERPYRPKELDYSYLLEFTIKNHGISQGEKLFCCIPKDYQN-----ELLYNNLVIACLDKG 109
           E  +RP  + Y+ L+    K   +   E +F  I K  +N      +LYN ++ A  + G
Sbjct: 86  EDGHRPTLITYTTLVAALTK---LKHFESIFLLISKVEENGMKPDSILYNAMINAFSESG 142

Query: 110 VIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKAD-KVAPHVSTF 168
            +K +++  +KM+  G   +   FN LI    + G+ +    +L  M  D  V P+  T+
Sbjct: 143 NVKEAMKIFQKMKDTGCKPTTSTFNTLIKGYGNAGKPEEGLKMLHLMSLDGSVKPNDRTY 202

Query: 169 HILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEK 228
           +IL++   +  NIE    V   M  S ++P+ V+Y ILA A+A       AE  +  ++ 
Sbjct: 203 NILVRAWCSKKNIEEAWNVLHKMVASGIQPDVVTYNILARAYAQKGETLRAEDLILEMQY 262

Query: 229 SMTGNNWSTLDVLIILYGYLAKGKDLE--RIWATVQEL---PNVRSKSYVLAIEAFGRIA 283
                N  T    II+ GY  +G  +E  R    ++EL   PN+    +   I+ F  I 
Sbjct: 263 EKVAPNERTCG--IIVNGYCKEGNMIEALRFVYRMKELGVHPNL--VIFNSLIKGFLDIT 318

Query: 284 QVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYR 343
                +E    M+          ++++++ +   G +DK   +  +M+  G +P+   + 
Sbjct: 319 DTDGVDEALTLMEEYGVKPDVITFSTIMNAWSSAGLMDKCQEIFNDMAKAGIEPDIHAFS 378

Query: 344 HLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENL 403
            LA G  ++   E     L       T+       P +    +II  +   G + NA+ +
Sbjct: 379 ILAKGYVRAGETENAESVL-------TSMAKSGVRPNVVICTTIISGWCSAGKMENAKMV 431

Query: 404 FEELKKANYTKYTFVYNTLIKAYVKAKINDPN----LLRRMILGGARPDAETYSLLKLA 458
           +E++ +   +     + TLI  Y +A+   P     LL+ M   G  P+  T  L+  A
Sbjct: 432 YEKMCEIGISPNLKTFETLIWGYAEAR--QPGKAEELLQLMEEKGVFPEKSTIQLVADA 488


>gi|357499975|ref|XP_003620276.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355495291|gb|AES76494.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 590

 Score = 82.0 bits (201), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 80/367 (21%), Positives = 155/367 (42%), Gaps = 43/367 (11%)

Query: 94  NELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNIL 153
           N ++YN ++ +     ++  + +   +M   G S   + ++ LI      G+ K   ++ 
Sbjct: 224 NVVMYNTIIDSMCKVKLVNEAFDLFSEMVSKGISPDVVTYSALISGFCILGKLKDAIDLF 283

Query: 154 RQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVA 213
            +M  + + P V TF+IL+     D  ++    V+  M +  ++PN V+Y  L   + + 
Sbjct: 284 NKMILENIKPDVYTFNILVNAFCKDGKMKEGKTVFDMMMKQGIKPNFVTYNSLMDGYCLV 343

Query: 214 RLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSKSYV 273
           +    A++                      ++  +A+G              N   +SY 
Sbjct: 344 KEVNKAKS----------------------IFNTMAQGG------------VNPDIQSYS 369

Query: 274 LAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMN 333
           + I  F +I +   A  L+ EM     +     Y+S+I    K+G I  A  L+ +M   
Sbjct: 370 IMINGFCKIKKFDEAMNLFKEMHRKNIIPDVVTYSSLIDGLSKSGRISYALQLVDQMHDR 429

Query: 334 GCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAE 393
           G  PN  TY  +     K++ V++        + L+T  K +   P + T   +I+   +
Sbjct: 430 GVPPNICTYNSILDALCKTHQVDK-------AIALLTKFKDKGFQPDISTYSILIKGLCQ 482

Query: 394 KGDVGNAENLFEELKKANYTKYTFVYNTLIKAY-VKAKINDP-NLLRRMILGGARPDAET 451
            G + +A  +FE+L    Y    + Y  +I+ + V+   N+   LL +M   G  PDA+T
Sbjct: 483 SGKLEDARKVFEDLLVKGYNLDVYAYTIMIQGFCVEGLFNEALALLSKMEDNGCIPDAKT 542

Query: 452 YSLLKLA 458
           Y ++ L+
Sbjct: 543 YEIIILS 549



 Score = 39.3 bits (90), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 39/155 (25%), Positives = 68/155 (43%), Gaps = 19/155 (12%)

Query: 308 NSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALG-CFKSNLVEEGF----KAL 362
           N +I+ +C+ G I  A  +  ++   G  P+ IT+  L+ G C K   +++ F    K +
Sbjct: 124 NILINCFCQLGLIPFAFSVFAKILKMGYVPDTITFTTLSKGLCLKGQ-IQQAFLFHDKVV 182

Query: 363 ELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTL 422
            LG       ++   T        +I    + G+   A +L + +          +YNT+
Sbjct: 183 ALGFHF---DQISYGT--------LIHGLCKVGETRAALDLLQRVDGNLVQPNVVMYNTI 231

Query: 423 IKAYVKAK-INDP-NLLRRMILGGARPDAETYSLL 455
           I +  K K +N+  +L   M+  G  PD  TYS L
Sbjct: 232 IDSMCKVKLVNEAFDLFSEMVSKGISPDVVTYSAL 266


>gi|302757495|ref|XP_002962171.1| hypothetical protein SELMODRAFT_77736 [Selaginella moellendorffii]
 gi|300170830|gb|EFJ37431.1| hypothetical protein SELMODRAFT_77736 [Selaginella moellendorffii]
          Length = 731

 Score = 82.0 bits (201), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 75/342 (21%), Positives = 147/342 (42%), Gaps = 12/342 (3%)

Query: 120 KMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADK-VAPHVSTFHILMKIEAND 178
           +M   G  ++ + FN +I +    GR +    ++ +MK  K   P V+T++ L+++   +
Sbjct: 254 EMMKAGVELTTVTFNAMIHVYGKAGRTREAELLVTKMKQRKDCCPDVATYNSLIEMYVKN 313

Query: 179 HNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTL 238
             +E +      M+ S V P++V++  L +A+A   +   AE  V+ +E S    + +  
Sbjct: 314 DKLELVSGCLERMRDSGVSPDQVTFRTLISAYAANNVVWKAEALVQEMEGSGFFIDQAMY 373

Query: 239 DVLIILYGYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSV 298
            V+I +Y         E ++  +     +   +YV  ++ +     + +A E++ E+   
Sbjct: 374 TVMIAMYVRARDVSKAESVFRFLHSRGGLEVSTYVGVMDVYAEHKCLDQAREVF-ELAKN 432

Query: 299 KQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEG 358
             LK    YN ++  Y        A  + + M  +G  PN  ++  L     K  L    
Sbjct: 433 AGLKTPSLYNVMMKAYGACDRFTDAVTVFEAMEKDGASPNEASFNSLIQLLCKGRL---- 488

Query: 359 FKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFV 418
              LE+  +++   K     P L +  S++  + + G V  AE +F+E+  +        
Sbjct: 489 ---LEILQRVLVLVKAAGFKPSLASCSSVVSFYGDMGRVREAERVFKEMLASGVEADVIC 545

Query: 419 YNTLIKAYVKAKI--NDPNLLRRMILGGARPDAETY-SLLKL 457
           Y+ L+ AY +A         L  +   G  PD   Y S++KL
Sbjct: 546 YSALLNAYAEAGFAREAQQTLDSLKAAGFVPDTIVYTSMMKL 587



 Score = 68.9 bits (167), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 86/349 (24%), Positives = 153/349 (43%), Gaps = 54/349 (15%)

Query: 155 QMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVAR 214
           +M  ++V P + T+ IL+ +       +  ++ Y  M  S VEP+EV   +++T   + R
Sbjct: 142 EMLGERVPPTIFTYSILVDVHGRAGMKDEAIRFYRHMIESGVEPDEV---MVSTYMNLQR 198

Query: 215 LYTVAETYVEALEKSMTGN----------NWSTLDVLIILYGYLAKGKDLERIWATVQ-- 262
            +   E   +A     + N          N  T + +I  YG  AK  +  +++A +   
Sbjct: 199 RFGDLEEAEKAFWGLFSENLVDGTTKRPENPETFNTMISFYGEHAKFAEASKVFAEMMKA 258

Query: 263 --ELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQL-KATEQYNSVISVYCKNGF 319
             EL  V   ++   I  +G+  +   AE L  +M+  K        YNS+I +Y KN  
Sbjct: 259 GVELTTV---TFNAMIHVYGKAGRTREAELLVTKMKQRKDCCPDVATYNSLIEMYVKNDK 315

Query: 320 IDKASGLLKEMSMNGCKPNAITYRHLALGCFKSN--------LVEE----GFKALELGMK 367
           ++  SG L+ M  +G  P+ +T+R L +  + +N        LV+E    GF   +    
Sbjct: 316 LELVSGCLERMRDSGVSPDQVTFRTL-ISAYAANNVVWKAEALVQEMEGSGFFIDQAMYT 374

Query: 368 LITTKKVRS--------------STPWLE--TTLSIIEIFAEKGDVGNAENLFEELKKAN 411
           ++    VR+              S   LE  T + +++++AE   +  A  +FE  K A 
Sbjct: 375 VMIAMYVRARDVSKAESVFRFLHSRGGLEVSTYVGVMDVYAEHKCLDQAREVFELAKNAG 434

Query: 412 YTKYTFVYNTLIKAYVKA-KINDP-NLLRRMILGGARPDAETY-SLLKL 457
             K   +YN ++KAY    +  D   +   M   GA P+  ++ SL++L
Sbjct: 435 L-KTPSLYNVMMKAYGACDRFTDAVTVFEAMEKDGASPNEASFNSLIQL 482



 Score = 43.1 bits (100), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 49/255 (19%), Positives = 97/255 (38%), Gaps = 47/255 (18%)

Query: 107 DKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVS 166
           D G ++ +    K+M   G     + ++ L+   +  G  +     L  +KA    P   
Sbjct: 520 DMGRVREAERVFKEMLASGVEADVICYSALLNAYAEAGFAREAQQTLDSLKAAGFVPDTI 579

Query: 167 TFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEAL 226
            +  +MK+ +N        K+Y ++ R  + P+  +   +   +  + ++T AE    A+
Sbjct: 580 VYTSMMKLYSNLGLTAEAEKIYEEISR--LSPDVFAANTMLNLYIKSGMFTEAEQLFRAM 637

Query: 227 EKSMTGNNWSTLDVLIILY---GYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIA 283
           ++   G N     +++ LY   G + +G D+ R+ +    + + R+              
Sbjct: 638 QRGKPGLNEVACTMMLKLYREAGKIEQGLDVARVMSRRFLITDARA-------------- 683

Query: 284 QVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYR 343
                                  +N VI++Y K G + +A   LKEM   G  P+  T+ 
Sbjct: 684 -----------------------FNGVIAMYVKAGLMREALEALKEMRRAGLVPSRSTF- 719

Query: 344 HLALGCFKSNLVEEG 358
                CF+  L   G
Sbjct: 720 ----SCFEEILERAG 730


>gi|15233259|ref|NP_188222.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75274469|sp|Q9LW84.1|PP236_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g16010
 gi|9294448|dbj|BAB02667.1| unnamed protein product [Arabidopsis thaliana]
 gi|332642241|gb|AEE75762.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 642

 Score = 82.0 bits (201), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 90/402 (22%), Positives = 172/402 (42%), Gaps = 22/402 (5%)

Query: 33  INRLRKLQLNKRALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQGEKLF------C 86
           I+   KL  N  A+ + +  +++   +P E  Y+ LL    K   + +   LF       
Sbjct: 240 ISSYEKLGRNDSAIRLFDE-MKDNCMQPTEKIYTTLLGIYFKVGKVEKALDLFEEMKRAG 298

Query: 87  CIPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRR 146
           C P  Y     Y  L+      G +  +  + K M   G +   +  N L+ +    GR 
Sbjct: 299 CSPTVYT----YTELIKGLGKAGRVDEAYGFYKDMLRDGLTPDVVFLNNLMNILGKVGRV 354

Query: 147 KTIPNILRQMKADKVAPHVSTFHILMK--IEANDHNIEGLMKVYSDMKRSEVEPNEVSYC 204
           + + N+  +M   +  P V +++ ++K   E+  H +  +   +  MK   V P+E +Y 
Sbjct: 355 EELTNVFSEMGMWRCTPTVVSYNTVIKALFESKAH-VSEVSSWFDKMKADSVSPSEFTYS 413

Query: 205 ILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQE- 263
           IL   +        A   +E +++       +    LI   G   + +    ++  ++E 
Sbjct: 414 ILIDGYCKTNRVEKALLLLEEMDEKGFPPCPAAYCSLINALGKAKRYEAANELFKELKEN 473

Query: 264 LPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKA 323
             NV S+ Y + I+ FG+  ++S A +L+ EM++         YN+++S   K G I++A
Sbjct: 474 FGNVSSRVYAVMIKHFGKCGKLSEAVDLFNEMKNQGSGPDVYAYNALMSGMVKAGMINEA 533

Query: 324 SGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLET 383
           + LL++M  NGC+ + I   ++ L  F    V    +A+E    +  T K     P   T
Sbjct: 534 NSLLRKMEENGCRAD-INSHNIILNGFARTGVPR--RAIE----MFETIKHSGIKPDGVT 586

Query: 384 TLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKA 425
             +++  FA  G    A  +  E+K   +      Y++++ A
Sbjct: 587 YNTLLGCFAHAGMFEEAARMMREMKDKGFEYDAITYSSILDA 628



 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 87/371 (23%), Positives = 162/371 (43%), Gaps = 28/371 (7%)

Query: 98  YNNLVIACLDKGVIKLSLEYMKKMRVLGHSI-SYLVFNRLIILNSSPGRRKTIPNILRQM 156
           YN++++  + +G  +   E   +M   G      + ++ LI      GR  +   +  +M
Sbjct: 200 YNSVILMLMQEGQHEKVHEVYTEMCNEGDCFPDTITYSALISSYEKLGRNDSAIRLFDEM 259

Query: 157 KADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVA-RL 215
           K + + P    +  L+ I      +E  + ++ +MKR+   P   +Y  L      A R+
Sbjct: 260 KDNCMQPTEKIYTTLLGIYFKVGKVEKALDLFEEMKRAGCSPTVYTYTELIKGLGKAGRV 319

Query: 216 YTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATV---QELPNVRSKSY 272
                 Y + L   +T  +   L+ L+ + G + + ++L  +++ +   +  P V S + 
Sbjct: 320 DEAYGFYKDMLRDGLT-PDVVFLNNLMNILGKVGRVEELTNVFSEMGMWRCTPTVVSYNT 378

Query: 273 VLA--IEAFGRIAQVSRAEELWLEMQSVKQLKATE-QYNSVISVYCKNGFIDKASGLLKE 329
           V+    E+   +++VS     W +      +  +E  Y+ +I  YCK   ++KA  LL+E
Sbjct: 379 VIKALFESKAHVSEVSS----WFDKMKADSVSPSEFTYSILIDGYCKTNRVEKALLLLEE 434

Query: 330 MSMNGCKPNAITYRHL--ALGCFKS-NLVEEGFKALELGMKLITTKKVRSSTPWLETTLS 386
           M   G  P    Y  L  ALG  K      E FK L+     ++++              
Sbjct: 435 MDEKGFPPCPAAYCSLINALGKAKRYEAANELFKELKENFGNVSSR----------VYAV 484

Query: 387 IIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAK-INDPN-LLRRMILGG 444
           +I+ F + G +  A +LF E+K        + YN L+   VKA  IN+ N LLR+M   G
Sbjct: 485 MIKHFGKCGKLSEAVDLFNEMKNQGSGPDVYAYNALMSGMVKAGMINEANSLLRKMEENG 544

Query: 445 ARPDAETYSLL 455
            R D  +++++
Sbjct: 545 CRADINSHNII 555



 Score = 56.6 bits (135), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 48/176 (27%), Positives = 77/176 (43%), Gaps = 10/176 (5%)

Query: 276 IEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNG- 334
           ++A GR   VS+A  ++ + +  K    +  YNSVI +  + G  +K   +  EM   G 
Sbjct: 169 VKALGRAKMVSKALSVFYQAKGRKCKPTSSTYNSVILMLMQEGQHEKVHEVYTEMCNEGD 228

Query: 335 CKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEK 394
           C P+ ITY  L           E     +  ++L    K     P  +   +++ I+ + 
Sbjct: 229 CFPDTITYSALISS-------YEKLGRNDSAIRLFDEMKDNCMQPTEKIYTTLLGIYFKV 281

Query: 395 GDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKINDP--NLLRRMILGGARPD 448
           G V  A +LFEE+K+A  +   + Y  LIK   KA   D      + M+  G  PD
Sbjct: 282 GKVEKALDLFEEMKRAGCSPTVYTYTELIKGLGKAGRVDEAYGFYKDMLRDGLTPD 337


>gi|356532720|ref|XP_003534919.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g22470, mitochondrial-like [Glycine max]
          Length = 468

 Score = 82.0 bits (201), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 87/354 (24%), Positives = 148/354 (41%), Gaps = 13/354 (3%)

Query: 105 CLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPH 164
           CL KG +K  L +  K+       + + +  L+      G  +    +LR ++     P+
Sbjct: 91  CL-KGEVKKLLHFHDKVVAQAFQTNQVSYGTLLNGLCKTGETRCAIKLLRMIEDRSTRPN 149

Query: 165 VSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVE 224
           V  +  ++     D  +     +YS+M   E+ PN ++Y  L  A  +A     A + + 
Sbjct: 150 VVMYSAIIDGLCKDKLVNEAYDLYSEMDAREIFPNVITYNTLICAFCLAGQLMGAFSLLH 209

Query: 225 ALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIW-ATVQELPNVRSKSYVLAIEAFGRIA 283
            +       +  T  +LI       +GK+ ++I+ A VQ   N    SY + I    +  
Sbjct: 210 EMILKNINPDVYTFSILI--DALCKEGKNAKQIFHAMVQMGVNPNVYSYNIMINGLCKCK 267

Query: 284 QVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYR 343
           +V  A  L  EM     +  T  YNS+I   CK+G I  A  L+ EM   G   + +TY 
Sbjct: 268 RVDEAMNLLREMLHKNMVPDTVTYNSLIDGLCKSGRITSALNLMNEMHHRGQPADVVTYT 327

Query: 344 HLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENL 403
            L     K+  ++   KA  L MK+    K R   P + T  ++I+   + G + NA+ L
Sbjct: 328 SLLDALCKNQNLD---KATALFMKM----KERGIQPTMYTYTALIDGLCKGGRLKNAQEL 380

Query: 404 FEELKKANYTKYTFVYNTLIKAYVKAKINDPNLL--RRMILGGARPDAETYSLL 455
           F+ L         + Y  +I    K  + D  L    +M   G  P+A T+ ++
Sbjct: 381 FQHLLVKGCCIDVWTYTVMISGLCKEGMFDEALAIKSKMEDNGCIPNAVTFEII 434



 Score = 56.6 bits (135), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 65/318 (20%), Positives = 138/318 (43%), Gaps = 16/318 (5%)

Query: 33  INRLRKLQLNKRALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQGEKLFCCIP--K 90
           +N L K    + A++++  +I +R  RP  + YS +++   K+  +++   L+  +   +
Sbjct: 122 LNGLCKTGETRCAIKLLR-MIEDRSTRPNVVMYSAIIDGLCKDKLVNEAYDLYSEMDARE 180

Query: 91  DYQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIP 150
            + N + YN L+ A    G +  +   + +M +   +I+  V+   I++++     K   
Sbjct: 181 IFPNVITYNTLICAFCLAGQLMGAFSLLHEMIL--KNINPDVYTFSILIDALCKEGKNAK 238

Query: 151 NILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAH 210
            I   M    V P+V +++I++        ++  M +  +M    + P+ V+Y  L    
Sbjct: 239 QIFHAMVQMGVNPNVYSYNIMINGLCKCKRVDEAMNLLREMLHKNMVPDTVTYNSLIDGL 298

Query: 211 AVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQEL------ 264
             +   T A   +  +       +  T   L+     L K ++L++  A   ++      
Sbjct: 299 CKSGRITSALNLMNEMHHRGQPADVVTYTSLL---DALCKNQNLDKATALFMKMKERGIQ 355

Query: 265 PNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKAS 324
           P + +  Y   I+   +  ++  A+EL+  +           Y  +IS  CK G  D+A 
Sbjct: 356 PTMYT--YTALIDGLCKGGRLKNAQELFQHLLVKGCCIDVWTYTVMISGLCKEGMFDEAL 413

Query: 325 GLLKEMSMNGCKPNAITY 342
            +  +M  NGC PNA+T+
Sbjct: 414 AIKSKMEDNGCIPNAVTF 431



 Score = 41.2 bits (95), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 44/176 (25%), Positives = 73/176 (41%), Gaps = 30/176 (17%)

Query: 310 VISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALG-C----------FKSNLVEEG 358
           +I+ +C  G +  +  LL ++   G  PN IT+  L  G C          F   +V + 
Sbjct: 51  LINCFCHLGQMAFSFSLLGKILKLGYXPNTITWTTLMKGLCLKGEVKKLLHFHDKVVAQA 110

Query: 359 FKALEL-----------------GMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAE 401
           F+  ++                  +KL+   + RS+ P +    +II+   +   V  A 
Sbjct: 111 FQTNQVSYGTLLNGLCKTGETRCAIKLLRMIEDRSTRPNVVMYSAIIDGLCKDKLVNEAY 170

Query: 402 NLFEELKKANYTKYTFVYNTLIKAYVKAK--INDPNLLRRMILGGARPDAETYSLL 455
           +L+ E+           YNTLI A+  A   +   +LL  MIL    PD  T+S+L
Sbjct: 171 DLYSEMDAREIFPNVITYNTLICAFCLAGQLMGAFSLLHEMILKNINPDVYTFSIL 226


>gi|302821481|ref|XP_002992403.1| hypothetical protein SELMODRAFT_42645 [Selaginella moellendorffii]
 gi|300139819|gb|EFJ06553.1| hypothetical protein SELMODRAFT_42645 [Selaginella moellendorffii]
          Length = 448

 Score = 82.0 bits (201), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 90/406 (22%), Positives = 169/406 (41%), Gaps = 23/406 (5%)

Query: 60  PKELDYSYLLEFTIKNHGISQGEKLFCCIPKD--YQNELLYNNLVIACLDKGVIKLSLEY 117
           P  + YS L+    K     Q  +L   + K     +  +YN ++    D G +  +L +
Sbjct: 31  PDSITYSTLINGFCKARDFQQAYRLLDEMEKRGIVPHNAVYNTIIKGLCDNGRVDSALVH 90

Query: 118 MKKMRVLGHSI-SYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEA 176
            + M+   H   S + +  L+       R      IL  M     AP+V T++ L+    
Sbjct: 91  YRDMQ--RHCAPSVITYTILVDALCKSARISDASLILEDMIEAGCAPNVVTYNTLINGFC 148

Query: 177 NDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWS 236
              N++  + +++ M  +   P+  +Y IL   +            ++ + K     N+ 
Sbjct: 149 KLGNMDEAVVLFNQMLENSCSPDVFTYNILIDGYCKQERPQDGAKLLQEMVKYGCEPNFI 208

Query: 237 TLDVL---IILYGYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWL 293
           T + L   ++  G      +L ++       P+    ++ L I+ F ++ Q+  A EL+ 
Sbjct: 209 TYNTLMDSLVKSGKYIDAFNLAQMMLRRDCKPS--HFTFNLMIDMFCKVGQLDLAYELFQ 266

Query: 294 EMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSN 353
            M     L     YN +IS  C+   ID A  LL+ M+  GC P+ +TY  +  G  K++
Sbjct: 267 LMTDRGCLPDIYTYNIMISGACRANRIDDARQLLERMTEAGCPPDVVTYNSIVSGLCKAS 326

Query: 354 LVEEGFKALELGMKLITTKKVRSSTPWLE--TTLSIIEIFAEKGDVGNAENLFEELKKAN 411
            V+E ++  E+         +R+   +L+  T  ++I+   +   + +AE L  E+++  
Sbjct: 327 QVDEAYEVYEV---------LRNGGYFLDVVTCSTLIDGLCKSRRLDDAEKLLREMERNG 377

Query: 412 YTKYTFVYNTLIKAYVKAKINDPNL--LRRMILGGARPDAETYSLL 455
                  Y  LI  + KA   D +L     M+  G  P   TYS++
Sbjct: 378 SAPDVVAYTILIHGFCKADQLDKSLAFFSEMLDKGCVPTVITYSIV 423



 Score = 42.7 bits (99), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 66/315 (20%), Positives = 112/315 (35%), Gaps = 44/315 (13%)

Query: 55  ERPYRPKELDYSYLLEFTIKNHGISQGEKL------FCCIPKDYQNELLYNNLVIACLDK 108
           E    P    Y+ L++   K      G KL      + C P    N + YN L+ + +  
Sbjct: 165 ENSCSPDVFTYNILIDGYCKQERPQDGAKLLQEMVKYGCEP----NFITYNTLMDSLVKS 220

Query: 109 GVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTF 168
           G    +    + M       S+  FN +I +    G+      + + M      P + T+
Sbjct: 221 GKYIDAFNLAQMMLRRDCKPSHFTFNLMIDMFCKVGQLDLAYELFQLMTDRGCLPDIYTY 280

Query: 169 HILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEK 228
           +I++      + I+   ++   M  +   P+ V+Y   +    + +   V E Y E  E 
Sbjct: 281 NIMISGACRANRIDDARQLLERMTEAGCPPDVVTY--NSIVSGLCKASQVDEAY-EVYEV 337

Query: 229 SMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRA 288
              G  +  LDV+                  T   L           I+   +  ++  A
Sbjct: 338 LRNGGYF--LDVV------------------TCSTL-----------IDGLCKSRRLDDA 366

Query: 289 EELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALG 348
           E+L  EM+          Y  +I  +CK   +DK+     EM   GC P  ITY  +   
Sbjct: 367 EKLLREMERNGSAPDVVAYTILIHGFCKADQLDKSLAFFSEMLDKGCVPTVITYSIVIDK 426

Query: 349 CFKSNLVEEGFKALE 363
             KS  V +G   L+
Sbjct: 427 LCKSARVRDGCMLLK 441



 Score = 40.8 bits (94), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 38/150 (25%), Positives = 67/150 (44%), Gaps = 10/150 (6%)

Query: 308 NSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMK 367
           N ++S + +     +A  L K      C P++ITY  L  G  K+   ++ ++ L+   K
Sbjct: 2   NCLLSAFVRKKKAQEAYDLFKNHLCGLCSPDSITYSTLINGFCKARDFQQAYRLLDEMEK 61

Query: 368 LITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYV 427
                  R   P      +II+   + G V +A   + ++++ +       Y  L+ A  
Sbjct: 62  -------RGIVPHNAVYNTIIKGLCDNGRVDSALVHYRDMQR-HCAPSVITYTILVDALC 113

Query: 428 K-AKINDPNL-LRRMILGGARPDAETYSLL 455
           K A+I+D +L L  MI  G  P+  TY+ L
Sbjct: 114 KSARISDASLILEDMIEAGCAPNVVTYNTL 143


>gi|255583247|ref|XP_002532388.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223527912|gb|EEF30000.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 676

 Score = 82.0 bits (201), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 90/425 (21%), Positives = 177/425 (41%), Gaps = 55/425 (12%)

Query: 75  NHGISQGEKLFCCIPKD--YQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLV 132
           N+ ++    +F  +PK    +NE+ Y NL+    + G +   +   KKMR      +   
Sbjct: 17  NNDVNSAFSVFNMMPKKGCRRNEVSYTNLIHGLCEVGRVDEGINIFKKMREDDCYPTVRT 76

Query: 133 FNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMK 192
           +  ++      GRR    N+  +M+     P++ T+ +++     +  +E   ++  +M 
Sbjct: 77  YTVIVHALFESGRRMEAINLFSEMRERGCEPNIHTYTVMINAMCKETKLEEGRRILDEMV 136

Query: 193 RSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGK 252
              + P+  +Y  L   +    +   A+  ++ +  +    N  T + LI   G+  K K
Sbjct: 137 EKGLVPSVPTYNALIDGYCKEGMVEAAQEILDLMHSNSCNPNERTYNELIC--GFCRK-K 193

Query: 253 DLERIWATVQEL------PNVRSK---------------------------------SYV 273
           ++ R  A + ++      P+V +                                  +Y 
Sbjct: 194 NVHRAMALLSKMLESRLTPSVVTYNSLIHGQCKIGYLDSAYRLLNLMNENGVVPDQWTYS 253

Query: 274 LAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQ-YNSVISVYCKNGFIDKASGLLKEMSM 332
           + I+   +  ++  A  L+  ++  K +KA E  Y ++I  YCK G +D A+ LL  M  
Sbjct: 254 VFIDTLCKKGRIEEANVLFNSLKE-KGIKANEVIYTALIDGYCKAGKMDDANSLLDRMLT 312

Query: 333 NGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFA 392
             C PN+ TY  L  G  K   V+E      L M+ +  K ++ + P    T+ I+ +  
Sbjct: 313 EDCLPNSSTYNALIDGLCKERKVQEAL----LLMESMIQKGLKCTVPTY--TILIVAMLK 366

Query: 393 EKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYV-KAKINDP-NLLRRMILGGARPDAE 450
           E GD   A  + +++  + Y    ++Y   I A+  +  I +  +++  M   G  PDA 
Sbjct: 367 E-GDFDYAHRILDQMVSSGYQPDVYIYTAFIHAFCTRGNIKEAEDMMSMMFERGVMPDAL 425

Query: 451 TYSLL 455
           TY+L+
Sbjct: 426 TYTLV 430



 Score = 76.3 bits (186), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 81/323 (25%), Positives = 141/323 (43%), Gaps = 50/323 (15%)

Query: 174 IEAN-DHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTG 232
           +EAN ++++     V++ M +     NEVSY  L   H +  +  V E  +   +K    
Sbjct: 12  VEANLNNDVNSAFSVFNMMPKKGCRRNEVSYTNLI--HGLCEVGRVDEG-INIFKKMRED 68

Query: 233 NNWSTLDV-LIILYGYLAKGKDLERI--WATVQEL---PNVRSKSYVLAIEAFGRIAQVS 286
           + + T+    +I++     G+ +E I  ++ ++E    PN+ +  Y + I A  +  ++ 
Sbjct: 69  DCYPTVRTYTVIVHALFESGRRMEAINLFSEMRERGCEPNIHT--YTVMINAMCKETKLE 126

Query: 287 RAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLA 346
               +  EM     + +   YN++I  YCK G ++ A  +L  M  N C PN  TY  L 
Sbjct: 127 EGRRILDEMVEKGLVPSVPTYNALIDGYCKEGMVEAAQEILDLMHSNSCNPNERTYNELI 186

Query: 347 LG-CFKSNLVEEGFKALELGMKLITTKKVRSSTP------------WLET---------- 383
            G C K N+     +A+ L  K++ ++   S               +L++          
Sbjct: 187 CGFCRKKNV----HRAMALLSKMLESRLTPSVVTYNSLIHGQCKIGYLDSAYRLLNLMNE 242

Query: 384 --------TLSI-IEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKA-KIND 433
                   T S+ I+   +KG +  A  LF  LK+        +Y  LI  Y KA K++D
Sbjct: 243 NGVVPDQWTYSVFIDTLCKKGRIEEANVLFNSLKEKGIKANEVIYTALIDGYCKAGKMDD 302

Query: 434 PN-LLRRMILGGARPDAETYSLL 455
            N LL RM+     P++ TY+ L
Sbjct: 303 ANSLLDRMLTEDCLPNSSTYNAL 325



 Score = 45.1 bits (105), Expect = 0.073,   Method: Compositional matrix adjust.
 Identities = 83/414 (20%), Positives = 154/414 (37%), Gaps = 30/414 (7%)

Query: 53  IRERPYRPKELDYSYLLEFTIKNHGISQGEKLFC------CIPKDYQNELLYNNLVIACL 106
           ++E+  +  E+ Y+ L++   K   +     L        C+P    N   YN L+    
Sbjct: 275 LKEKGIKANEVIYTALIDGYCKAGKMDDANSLLDRMLTEDCLP----NSSTYNALIDGLC 330

Query: 107 DKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVS 166
            +  ++ +L  M+ M   G   +   +  LI+     G       IL QM +    P V 
Sbjct: 331 KERKVQEALLLMESMIQKGLKCTVPTYTILIVAMLKEGDFDYAHRILDQMVSSGYQPDVY 390

Query: 167 TFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEAL 226
            +   +       NI+    + S M    V P+ ++Y ++  A+    L   A   ++ +
Sbjct: 391 IYTAFIHAFCTRGNIKEAEDMMSMMFERGVMPDALTYTLVIDAYGGLGLLNPAFDVLKRM 450

Query: 227 EKSMTGNNWSTLDVLIILYGYLAKGKDLERIW---ATVQELPNVRSKSYVLAIEAFGRIA 283
             +    +  T   LI    +L K ++L + +   A    +PNV    +   +    ++ 
Sbjct: 451 FDTGCDPSHHTYSCLI---KHLLK-EELTKKYKNVALCDSIPNV----FFADVADVWKMM 502

Query: 284 QVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYR 343
           +   A EL+ +M           Y  +I   CK G +  A  L   M+  G  P+   Y 
Sbjct: 503 KFETALELFEKMLEHGCSPNINTYAKLIIGLCKVGRLGVAQKLFDHMNERGVSPSEAIYN 562

Query: 344 HLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENL 403
            L   C +  +  +        ++L+         P LE+   +     E+G    A+ +
Sbjct: 563 SLLNCCCELGIYGD-------AVRLVGAMMEHGHLPLLESLNVLFCGLYEEGSKEKAKVV 615

Query: 404 FEELKKANYTKYTFVYNTLIKAYVKAKIND--PNLLRRMILGGARPDAETYSLL 455
           F  L +  Y      +  LI   +K  ++D    LL  M   G +   +TY +L
Sbjct: 616 FSNLLQCGYNDDEVAWKILIDGLLKNGLSDGCSELLGVMEARGCQIHPQTYRML 669


>gi|326505340|dbj|BAK03057.1| predicted protein [Hordeum vulgare subsp. vulgare]
 gi|326511084|dbj|BAJ91889.1| predicted protein [Hordeum vulgare subsp. vulgare]
 gi|326518326|dbj|BAJ88192.1| predicted protein [Hordeum vulgare subsp. vulgare]
 gi|326518558|dbj|BAJ88308.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 556

 Score = 82.0 bits (201), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 84/402 (20%), Positives = 162/402 (40%), Gaps = 17/402 (4%)

Query: 60  PKELDYSYLLEFTIKNHGISQGEKLFCCIPKDYQNELLYNNLVIACLDKGVIKLSLEYMK 119
           P  + Y+ ++        +    +L   +P +  +   YN L+     +G    +L  + 
Sbjct: 118 PDVMSYNAMVAGYCVTGQLDNARRLVAAMPME-PDTYTYNTLIRGLCGRGRTDNALAVLD 176

Query: 120 KMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDH 179
            M   G     + +  L+         K    +L +M+    AP + T+++++     + 
Sbjct: 177 DMLRRGCVPDVVTYTILLEATCKRSGYKQAVKLLDEMRDKGCAPDIVTYNVVVNGICQEG 236

Query: 180 NIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLD 239
            ++  M+    +     EPN VSY I+      A  +  AE  +  + +     N  T +
Sbjct: 237 RVDDAMEFLKSLPSYGCEPNTVSYNIVLKGLCTAERWEDAEKLMAEMSRKGRPPNVVTFN 296

Query: 240 VLIILYGYLAKGKDLERIWATVQELP----NVRSKSYVLAIEAFGRIAQVSRAEELWLEM 295
           +LI    +L +   +E     + ++P       S SY   + AF +  ++ RA      M
Sbjct: 297 MLI---SFLCRRGLVEPAMEILDQIPKYGCTPNSLSYNPILHAFCKQKKMDRAMAFVELM 353

Query: 296 QSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLV 355
            S         YN++++  C+ G +D A  LL ++   GC P  I+Y  +  G  K+   
Sbjct: 354 VSSGCYPDIVSYNTLLTALCRGGEVDAAVELLHQLKDKGCTPVLISYNTVIDGLTKAGKT 413

Query: 356 EEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKY 415
           EE   ALEL  +++T    +   P + T  +I      +G +  A   F +++       
Sbjct: 414 EE---ALELLNEMVT----KGLQPDIITYSTISSGLCREGRIEEAIKAFCKVQDMGIRPN 466

Query: 416 TFVYNTLIKAYVKAKINDP--NLLRRMILGGARPDAETYSLL 455
           T +YN ++    K +      +L   M+  G  P+  TY++L
Sbjct: 467 TVLYNAILLGLCKRRATHSAIDLFTYMVSNGCMPNESTYTIL 508



 Score = 62.8 bits (151), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 63/276 (22%), Positives = 115/276 (41%), Gaps = 29/276 (10%)

Query: 194 SEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKD 253
           +  EP+ +SY  +   + V      A   V A+        ++TL     + G   +G+ 
Sbjct: 114 ASCEPDVMSYNAMVAGYCVTGQLDNARRLVAAMPMEPDTYTYNTL-----IRGLCGRGRT 168

Query: 254 LERIWATVQEL------PNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQY 307
            +   A + ++      P+V   +Y + +EA  + +   +A +L  EM+          Y
Sbjct: 169 -DNALAVLDDMLRRGCVPDV--VTYTILLEATCKRSGYKQAVKLLDEMRDKGCAPDIVTY 225

Query: 308 NSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALEL--- 364
           N V++  C+ G +D A   LK +   GC+PN ++Y          N+V +G    E    
Sbjct: 226 NVVVNGICQEGRVDDAMEFLKSLPSYGCEPNTVSY----------NIVLKGLCTAERWED 275

Query: 365 GMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIK 424
             KL+     +   P + T   +I     +G V  A  + +++ K   T  +  YN ++ 
Sbjct: 276 AEKLMAEMSRKGRPPNVVTFNMLISFLCRRGLVEPAMEILDQIPKYGCTPNSLSYNPILH 335

Query: 425 AYVKAKINDPNL--LRRMILGGARPDAETYSLLKLA 458
           A+ K K  D  +  +  M+  G  PD  +Y+ L  A
Sbjct: 336 AFCKQKKMDRAMAFVELMVSSGCYPDIVSYNTLLTA 371



 Score = 58.2 bits (139), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 81/362 (22%), Positives = 143/362 (39%), Gaps = 59/362 (16%)

Query: 45  ALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQGEKLF------CCIPKDYQNELLY 98
           AL V++ ++R R   P  + Y+ LLE T K  G  Q  KL        C P    + + Y
Sbjct: 171 ALAVLDDMLR-RGCVPDVVTYTILLEATCKRSGYKQAVKLLDEMRDKGCAP----DIVTY 225

Query: 99  NNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKA 158
           N +V     +G +  ++E++K +   G   + + +N ++    +  R +    ++ +M  
Sbjct: 226 NVVVNGICQEGRVDDAMEFLKSLPSYGCEPNTVSYNIVLKGLCTAERWEDAEKLMAEMSR 285

Query: 159 DKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTV 218
               P+V TF++L+        +E  M++   + +    PN +SY  +  A    +    
Sbjct: 286 KGRPPNVVTFNMLISFLCRRGLVEPAMEILDQIPKYGCTPNSLSYNPILHAFCKQKKMDR 345

Query: 219 AETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSK-------S 271
           A  +VE +  S    +  + + L+     L +G +++   A V+ L  ++ K       S
Sbjct: 346 AMAFVELMVSSGCYPDIVSYNTLLT---ALCRGGEVD---AAVELLHQLKDKGCTPVLIS 399

Query: 272 YVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKAS------- 324
           Y   I+   +  +   A EL  EM +         Y+++ S  C+ G I++A        
Sbjct: 400 YNTVIDGLTKAGKTEEALELLNEMVTKGLQPDIITYSTISSGLCREGRIEEAIKAFCKVQ 459

Query: 325 ----------------GLLKE------------MSMNGCKPNAITYRHLALGCFKSNLVE 356
                           GL K             M  NGC PN  TY  L  G     LV+
Sbjct: 460 DMGIRPNTVLYNAILLGLCKRRATHSAIDLFTYMVSNGCMPNESTYTILIEGLAYEGLVK 519

Query: 357 EG 358
           E 
Sbjct: 520 EA 521


>gi|302785473|ref|XP_002974508.1| hypothetical protein SELMODRAFT_101075 [Selaginella moellendorffii]
 gi|300158106|gb|EFJ24730.1| hypothetical protein SELMODRAFT_101075 [Selaginella moellendorffii]
          Length = 567

 Score = 82.0 bits (201), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 82/373 (21%), Positives = 150/373 (40%), Gaps = 54/373 (14%)

Query: 124 LGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEG 183
           +G+  +   +N+L++  +   R      + ++M      P   TF IL++     + +E 
Sbjct: 1   MGYEHNVFTYNKLLLQLTREHRHDKASAVFQEMIDKSCQPDAFTFAILLRGLCRSNQLEK 60

Query: 184 LMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLII 243
             K+   MK     P++  Y  L + ++ A+ +  A  ++  + K+   +   T+     
Sbjct: 61  ARKLLGRMKEMGCVPDDAIYNALISGYSKAKDFGQAFKFLAEMVKN---HCLPTVVTYTN 117

Query: 244 LYGYLAKGKDLERIWATVQELPNVRSK-------SYVLAIEAFGRIAQVSRAEELWLEMQ 296
           +   L K    ER    V+ L  +R K       +Y + +E      ++  A+++  EM 
Sbjct: 118 IVDGLCKA---ERTRDAVKLLDEMRDKGCSPNIYTYNVIVEGLCEERKLDEAKKMLEEMA 174

Query: 297 S-------------VKQLKATEQ-------------------YNSVISVYCKNGFIDKAS 324
                         +K L   ++                   Y +VI+  CK+G +D AS
Sbjct: 175 VRGYFPDVVTYNSFIKGLCKCDRVDEARKFLARMPVTPDVVSYTTVINGLCKSGDLDSAS 234

Query: 325 GLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETT 384
            +L  MS  GC P+ +TY  L  G  K   VE     L+  +KL          P +   
Sbjct: 235 RMLDHMSNRGCTPDVVTYSSLIDGFCKGGEVERAMGLLDSMLKL-------GCRPNMVAY 287

Query: 385 LSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAK--INDPNLLRRMIL 442
            S++      G +G AE++  E+++  +T     YN  I    KA+       +  RM+ 
Sbjct: 288 NSLLGALHRLGHIGKAEDMLVEMERRGFTPDVVSYNACIDGLCKAERVKKAKAVFDRMVE 347

Query: 443 GGARPDAETYSLL 455
            G  P+A +YS+L
Sbjct: 348 RGCTPNASSYSML 360



 Score = 52.8 bits (125), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 62/289 (21%), Positives = 113/289 (39%), Gaps = 33/289 (11%)

Query: 65  YSYLLEFTIKNHGISQGEKLFCCIPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMRVL 124
           + +L E  +KNH          C+P      + Y N+V         + +++ + +MR  
Sbjct: 97  FKFLAEM-VKNH----------CLP----TVVTYTNIVDGLCKAERTRDAVKLLDEMRDK 141

Query: 125 GHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGL 184
           G S +   +N ++       +      +L +M      P V T++  +K       ++  
Sbjct: 142 GCSPNIYTYNVIVEGLCEERKLDEAKKMLEEMAVRGYFPDVVTYNSFIKGLCKCDRVDEA 201

Query: 185 MKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLII- 243
            K    + R  V P+ VSY  +      +     A   ++ +      N   T DV+   
Sbjct: 202 RKF---LARMPVTPDVVSYTTVINGLCKSGDLDSASRMLDHMS-----NRGCTPDVVTYS 253

Query: 244 -LYGYLAKGKDLERIWATVQEL------PNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQ 296
            L     KG ++ER    +  +      PN+ + + +L   A  R+  + +AE++ +EM+
Sbjct: 254 SLIDGFCKGGEVERAMGLLDSMLKLGCRPNMVAYNSLLG--ALHRLGHIGKAEDMLVEME 311

Query: 297 SVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHL 345
                     YN+ I   CK   + KA  +   M   GC PNA +Y  L
Sbjct: 312 RRGFTPDVVSYNACIDGLCKAERVKKAKAVFDRMVERGCTPNASSYSML 360



 Score = 41.2 bits (95), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 56/323 (17%), Positives = 119/323 (36%), Gaps = 27/323 (8%)

Query: 57  PYRPKELDYSYLLEFTIKNHGISQGEKLF------CCIPKDYQNELLYNNLVIACLDKGV 110
           P  P  + Y+ ++    K+  +    ++        C P    + + Y++L+      G 
Sbjct: 209 PVTPDVVSYTTVINGLCKSGDLDSASRMLDHMSNRGCTP----DVVTYSSLIDGFCKGGE 264

Query: 111 IKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHI 170
           ++ ++  +  M  LG   + + +N L+      G      ++L +M+     P V +++ 
Sbjct: 265 VERAMGLLDSMLKLGCRPNMVAYNSLLGALHRLGHIGKAEDMLVEMERRGFTPDVVSYNA 324

Query: 171 LMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTV------------ 218
            +        ++    V+  M      PN  SY +L        LYTV            
Sbjct: 325 CIDGLCKAERVKKAKAVFDRMVERGCTPNASSYSMLIVD---ILLYTVLLDGLCKGGRFD 381

Query: 219 --AETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSKSYVLAI 276
                + + L++ +   +    +V++  +    +     +I   + E       ++ + +
Sbjct: 382 EACALFSKVLDEKICEPDVFFYNVMLDSHCKRRQIDKALQIHKQMLEKNCCNVVTWNILV 441

Query: 277 EAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCK 336
                  ++S AE + L M     +     Y +++   CK G    A  L +E    GC 
Sbjct: 442 HGLCVDDRLSDAETMLLTMVDEGFIPDFVTYGTLVDAMCKCGKSAAALELFEEAVKGGCV 501

Query: 337 PNAITYRHLALGCFKSNLVEEGF 359
           P+ +TY  L  G    N+ EE +
Sbjct: 502 PDVVTYSALITGLVHENMAEEAY 524


>gi|297797974|ref|XP_002866871.1| EMB2453 [Arabidopsis lyrata subsp. lyrata]
 gi|297312707|gb|EFH43130.1| EMB2453 [Arabidopsis lyrata subsp. lyrata]
          Length = 561

 Score = 82.0 bits (201), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 76/325 (23%), Positives = 144/325 (44%), Gaps = 16/325 (4%)

Query: 44  RALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQGEKLFC------CIPKDYQNELL 97
           + LEV  W+ ++R Y P    YS L+    K         LF       C P    +  +
Sbjct: 115 QCLEVFRWMQKQRWYIPDNGVYSKLISVMGKKGQTRMAMWLFSEMKNSGCRP----DASV 170

Query: 98  YNNLVIACLDKGVIKLSLE----YMKKMRVLGHSISYLV-FNRLIILNSSPGRRKTIPNI 152
           YN L+ A L       +LE    Y  KM+ +      +V +N L+   +  G+   +  +
Sbjct: 171 YNALITAHLHTRDKAKALEKVRGYFDKMKGMERCQPNVVTYNILLRAFAQSGKVDQVNAL 230

Query: 153 LRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAV 212
            + +    V+P V TF+ +M     +  I+ +  V + M+ +E +P+ +++ +L  ++  
Sbjct: 231 FKDLDMSPVSPDVYTFNGVMDAYGKNGMIKEMEAVLTRMRSNECKPDIITFNVLIDSYGK 290

Query: 213 ARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRS-KS 271
            + +   E   ++L +S       T + +II YG        E ++  + ++  + S  +
Sbjct: 291 KQEFEKMEQTFKSLMRSKEKPTLPTFNSMIINYGKARMIDKAEWVFKKMNDMNYMPSFIT 350

Query: 272 YVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMS 331
           Y   I  +G    VSRA E++ E+   +++      N+++ VYC+NG   +A  L    S
Sbjct: 351 YECMIMMYGYCGSVSRAREIFEEVVDSERVLKASTLNAMLEVYCRNGLYMEADKLFHNAS 410

Query: 332 MNGCKPNAITYRHLALGCFKSNLVE 356
                P+A TY+ L     K+++ E
Sbjct: 411 AFRVHPDASTYKFLYKAYTKADMKE 435



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 65/310 (20%), Positives = 136/310 (43%), Gaps = 17/310 (5%)

Query: 132 VFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHN----IEGLMKV 187
           V+++LI +    G+ +    +  +MK     P  S ++ L+    +  +    +E +   
Sbjct: 135 VYSKLISVMGKKGQTRMAMWLFSEMKNSGCRPDASVYNALITAHLHTRDKAKALEKVRGY 194

Query: 188 YSDMKRSE-VEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYG 246
           +  MK  E  +PN V+Y IL  A A +          + L+ S    +  T + ++  YG
Sbjct: 195 FDKMKGMERCQPNVVTYNILLRAFAQSGKVDQVNALFKDLDMSPVSPDVYTFNGVMDAYG 254

Query: 247 YLAKGKDLERIWATVQE---LPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKA 303
                K++E +   ++     P++   ++ + I+++G+  +  + E+ +  +   K+   
Sbjct: 255 KNGMIKEMEAVLTRMRSNECKPDI--ITFNVLIDSYGKKQEFEKMEQTFKSLMRSKEKPT 312

Query: 304 TEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALE 363
              +NS+I  Y K   IDKA  + K+M+     P+ ITY  + +       V    +A E
Sbjct: 313 LPTFNSMIINYGKARMIDKAEWVFKKMNDMNYMPSFITYECMIMMYGYCGSVS---RARE 369

Query: 364 LGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLI 423
           +  +++ +++V  ++    T  +++E++   G    A+ LF              Y  L 
Sbjct: 370 IFEEVVDSERVLKAS----TLNAMLEVYCRNGLYMEADKLFHNASAFRVHPDASTYKFLY 425

Query: 424 KAYVKAKIND 433
           KAY KA + +
Sbjct: 426 KAYTKADMKE 435



 Score = 48.1 bits (113), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 49/193 (25%), Positives = 83/193 (43%), Gaps = 7/193 (3%)

Query: 267 VRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVK-QLKATEQYNSVISVYCKNGFIDKASG 325
           VR     L  E  G+  +  +  E++  MQ  +  +     Y+ +ISV  K G    A  
Sbjct: 95  VRCDHCFLLFEELGKSDKWLQCLEVFRWMQKQRWYIPDNGVYSKLISVMGKKGQTRMAMW 154

Query: 326 LLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALE-LGMKLITTKKVRSSTPWLETT 384
           L  EM  +GC+P+A  Y  L      +    +  KALE +       K +    P + T 
Sbjct: 155 LFSEMKNSGCRPDASVYNALITAHLHT---RDKAKALEKVRGYFDKMKGMERCQPNVVTY 211

Query: 385 LSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKI--NDPNLLRRMIL 442
             ++  FA+ G V     LF++L  +  +   + +N ++ AY K  +      +L RM  
Sbjct: 212 NILLRAFAQSGKVDQVNALFKDLDMSPVSPDVYTFNGVMDAYGKNGMIKEMEAVLTRMRS 271

Query: 443 GGARPDAETYSLL 455
              +PD  T+++L
Sbjct: 272 NECKPDIITFNVL 284


>gi|357141282|ref|XP_003572167.1| PREDICTED: pentatricopeptide repeat-containing protein At5g12100,
           mitochondrial-like [Brachypodium distachyon]
          Length = 686

 Score = 81.6 bits (200), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 90/404 (22%), Positives = 176/404 (43%), Gaps = 18/404 (4%)

Query: 60  PKELDYSYLLEFTIKNHGISQGEKLFCCIPKD--YQNELLYNNLVIACLDKGVIKLSLEY 117
           P    Y+ ++    K        KLF  +P+     N + YN ++   + KG ++     
Sbjct: 186 PNAFSYNVVIAGLWKAGTDCDAVKLFDEMPEKAVVPNHITYNTMIDGHIKKGDLESGFRL 245

Query: 118 MKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEAN 177
             +M   G   + + +N L+      GR      +L +M + K+ P   T+ IL    + 
Sbjct: 246 WSQMLRHGLKPNVITYNVLLSGLCRAGRMGETAAVLDEMASRKMVPDGFTYSILFDGHSR 305

Query: 178 DHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWST 237
             + + ++ ++ +  +  V+    +  IL          + AE  ++ L  S  G   +T
Sbjct: 306 TGDSQTMLSLFEESVKKGVKIGAYTCSILLNGLCKDGKISKAEEVLQTLVNS--GLLQTT 363

Query: 238 LDVLIILYGYLAKGKDLERIWATVQELPN--VRSK--SYVLAIEAFGRIAQVSRAEELWL 293
           +    ++ GY   G DLE  ++  Q++ +  +R    +Y   I   G++ +++ A +L +
Sbjct: 364 VIYNTLINGYCQIG-DLEGAFSIFQQMKSRLIRPDHITYNALINGLGKVERITEAHDLVI 422

Query: 294 EMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSN 353
           EM+      + E +N++I  Y + G ++K   +L +M   G KPN ++Y     G   + 
Sbjct: 423 EMEKNGVNPSVETFNTLIDAYGRAGQLEKCFIILSDMQEKGLKPNVVSY-----GSIVNA 477

Query: 354 LVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYT 413
             + G K LE  + ++    ++   P  +   +II+ + E G    A  L E++K +   
Sbjct: 478 FCKNG-KILE-AVAILDDMFIKDVLPGAQVYNAIIDAYIECGSTDQAFMLAEKMKSSGVP 535

Query: 414 KYTFVYNTLIKAYVK-AKINDP-NLLRRMILGGARPDAETYSLL 455
                YN LIK   K ++I++   LL  +   G  PD  +Y+ L
Sbjct: 536 PSIVTYNLLIKGLCKQSQISEAEELLDSLRNYGLAPDVISYNTL 579



 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 81/367 (22%), Positives = 143/367 (38%), Gaps = 45/367 (12%)

Query: 66  SYLLEFTIKNHGISQGEKLFCCIPKD--YQNELLYNNLVIACLDKGVIKLSLEYMKKMRV 123
           S LL    K+  IS+ E++   +      Q  ++YN L+      G ++ +    ++M+ 
Sbjct: 332 SILLNGLCKDGKISKAEEVLQTLVNSGLLQTTVIYNTLINGYCQIGDLEGAFSIFQQMKS 391

Query: 124 LGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEG 183
                 ++ +N LI       R     +++ +M+ + V P V TF+ L+        +E 
Sbjct: 392 RLIRPDHITYNALINGLGKVERITEAHDLVIEMEKNGVNPSVETFNTLIDAYGRAGQLEK 451

Query: 184 LMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLII 243
              + SDM+   ++PN VSY  +  A                        N   L+ + I
Sbjct: 452 CFIILSDMQEKGLKPNVVSYGSIVNAFC---------------------KNGKILEAVAI 490

Query: 244 LYGYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKA 303
           L     K             LP   ++ Y   I+A+       +A  L  +M+S     +
Sbjct: 491 LDDMFIK-----------DVLPG--AQVYNAIIDAYIECGSTDQAFMLAEKMKSSGVPPS 537

Query: 304 TEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHL-ALGCFKSNLVEEGFKAL 362
              YN +I   CK   I +A  LL  +   G  P+ I+Y  L +  C++SN      +AL
Sbjct: 538 IVTYNLLIKGLCKQSQISEAEELLDSLRNYGLAPDVISYNTLISACCYRSNT----DRAL 593

Query: 363 ELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTL 422
           EL  ++          P   T   +       G V   ENL++++   +    + +YN +
Sbjct: 594 ELEKEMWKC----GIKPSPRTYRMLFSSLGGAGRVHEMENLYQQMLDKDVVPCSGIYNIM 649

Query: 423 IKAYVKA 429
           + AY K 
Sbjct: 650 VDAYAKC 656



 Score = 44.7 bits (104), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 58/237 (24%), Positives = 94/237 (39%), Gaps = 42/237 (17%)

Query: 254 LERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISV 313
           L R+       PN  + SY + I    +      A +L+ EM     +     YN++I  
Sbjct: 175 LRRMGCDGAPAPN--AFSYNVVIAGLWKAGTDCDAVKLFDEMPEKAVVPNHITYNTMIDG 232

Query: 314 YCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKK 373
           + K G ++    L  +M  +G KPN ITY  L  G  ++  + E    L+   ++ + K 
Sbjct: 233 HIKKGDLESGFRLWSQMLRHGLKPNVITYNVLLSGLCRAGRMGETAAVLD---EMASRKM 289

Query: 374 V------------RSSTPWLETTLSIIEIFAEK-------------------GDVGNAEN 402
           V             S T   +T LS+ E   +K                   G +  AE 
Sbjct: 290 VPDGFTYSILFDGHSRTGDSQTMLSLFEESVKKGVKIGAYTCSILLNGLCKDGKISKAEE 349

Query: 403 LFEELKKANYTKYTFVYNTLIKAYVKAKINDP----NLLRRMILGGARPDAETYSLL 455
           + + L  +   + T +YNTLI  Y   +I D     ++ ++M     RPD  TY+ L
Sbjct: 350 VLQTLVNSGLLQTTVIYNTLINGY--CQIGDLEGAFSIFQQMKSRLIRPDHITYNAL 404



 Score = 44.3 bits (103), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 44/184 (23%), Positives = 78/184 (42%), Gaps = 23/184 (12%)

Query: 280 GRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGC-KPN 338
           GR A V  A EL +   + +    T  +N  +      G +D+A G+L+ M  +G   PN
Sbjct: 131 GRHADVRGAFELLV---AARARPDTFTWNKAVQACVVAGDLDEAVGMLRRMGCDGAPAPN 187

Query: 339 AITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVG 398
           A +Y  +  G +K+    +        +KL      ++  P   T  ++I+   +KGD+ 
Sbjct: 188 AFSYNVVIAGLWKAGTDCD-------AVKLFDEMPEKAVVPNHITYNTMIDGHIKKGDLE 240

Query: 399 NAENLFEELKKANYTKYTFVYNTLIKAYVK-------AKINDPNLLRRMILGGARPDAET 451
           +   L+ ++ +         YN L+    +       A + D    R+M+     PD  T
Sbjct: 241 SGFRLWSQMLRHGLKPNVITYNVLLSGLCRAGRMGETAAVLDEMASRKMV-----PDGFT 295

Query: 452 YSLL 455
           YS+L
Sbjct: 296 YSIL 299



 Score = 40.4 bits (93), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 58/289 (20%), Positives = 115/289 (39%), Gaps = 11/289 (3%)

Query: 53  IRERPYRPKELDYSYLLEFTIKNHGISQGEKLFCCIPKDYQNELL--YNNLVIACLDKGV 110
           ++ R  RP  + Y+ L+    K   I++   L   + K+  N  +  +N L+ A    G 
Sbjct: 389 MKSRLIRPDHITYNALINGLGKVERITEAHDLVIEMEKNGVNPSVETFNTLIDAYGRAGQ 448

Query: 111 IKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHI 170
           ++     +  M+  G   + + +  ++      G+      IL  M    V P    ++ 
Sbjct: 449 LEKCFIILSDMQEKGLKPNVVSYGSIVNAFCKNGKILEAVAILDDMFIKDVLPGAQVYNA 508

Query: 171 LMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSM 230
           ++       + +    +   MK S V P+ V+Y +L          + AE  +++L    
Sbjct: 509 IIDAYIECGSTDQAFMLAEKMKSSGVPPSIVTYNLLIKGLCKQSQISEAEELLDSLRNYG 568

Query: 231 TGNNWSTLDVLIILYGYLA---KGKDLER-IW-ATVQELPNVRSKSYVLAIEAFGRIAQV 285
              +  + + LI    Y +   +  +LE+ +W   ++  P    ++Y +   + G   +V
Sbjct: 569 LAPDVISYNTLISACCYRSNTDRALELEKEMWKCGIKPSP----RTYRMLFSSLGGAGRV 624

Query: 286 SRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNG 334
              E L+ +M     +  +  YN ++  Y K G   K   L KEMS  G
Sbjct: 625 HEMENLYQQMLDKDVVPCSGIYNIMVDAYAKCGEESKVEALRKEMSDKG 673


>gi|15236546|ref|NP_194913.1| proton gradient regulation 3 [Arabidopsis thaliana]
 gi|75213543|sp|Q9SZ52.1|PP344_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g31850, chloroplastic; AltName: Full=Protein PROTON
           GRADIENT REGULATION 3; Flags: Precursor
 gi|4584524|emb|CAB40755.1| putative protein [Arabidopsis thaliana]
 gi|7270088|emb|CAB79903.1| putative protein [Arabidopsis thaliana]
 gi|332660567|gb|AEE85967.1| proton gradient regulation 3 [Arabidopsis thaliana]
          Length = 1112

 Score = 81.6 bits (200), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 102/417 (24%), Positives = 178/417 (42%), Gaps = 27/417 (6%)

Query: 53  IRERPYRPKELDYSYLLEFTIKNHGISQGEKLF------CCIPKDYQNELLYNNLVIACL 106
           ++E   +P  + Y+ LL    KN  I +  +LF       C P    N + +N L     
Sbjct: 564 MKEMKLKPTVVTYNTLLAGLGKNGKIQEAIELFEGMVQKGCPP----NTITFNTLFDCLC 619

Query: 107 DKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVS 166
               + L+L+ + KM  +G       +N +I      G+ K       QMK   V P   
Sbjct: 620 KNDEVTLALKMLFKMMDMGCVPDVFTYNTIIFGLVKNGQVKEAMCFFHQMKK-LVYPDFV 678

Query: 167 TFHILMKIEANDHNIEGLMKVYSD-MKRSEVEPNEVSYCILATAHAVARLYTVAETYVEA 225
           T   L+        IE   K+ ++ +     +P  + +  L  +         A ++ E 
Sbjct: 679 TLCTLLPGVVKASLIEDAYKIITNFLYNCADQPANLFWEDLIGSILAEAGIDNAVSFSER 738

Query: 226 LEKSMTGNNWSTLDVLIILYGY----LAKGKDL-ERIWATVQELPNVRSKSYVLAIEAFG 280
           L  +    +  ++ V II Y      ++  + L E+    +   P +   +Y L I    
Sbjct: 739 LVANGICRDGDSILVPIIRYSCKHNNVSGARTLFEKFTKDLGVQPKL--PTYNLLIGGLL 796

Query: 281 RIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAI 340
               +  A++++L+++S   +     YN ++  Y K+G ID+   L KEMS + C+ N I
Sbjct: 797 EADMIEIAQDVFLQVKSTGCIPDVATYNFLLDAYGKSGKIDELFELYKEMSTHECEANTI 856

Query: 341 TYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNA 400
           T+  +  G  K+  V++   AL+L   L++    R  +P   T   +I+  ++ G +  A
Sbjct: 857 THNIVISGLVKAGNVDD---ALDLYYDLMSD---RDFSPTACTYGPLIDGLSKSGRLYEA 910

Query: 401 ENLFEELKKANYTKYTFVYNTLIKAYVKAKINDP--NLLRRMILGGARPDAETYSLL 455
           + LFE +          +YN LI  + KA   D    L +RM+  G RPD +TYS+L
Sbjct: 911 KQLFEGMLDYGCRPNCAIYNILINGFGKAGEADAACALFKRMVKEGVRPDLKTYSVL 967



 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 74/313 (23%), Positives = 133/313 (42%), Gaps = 18/313 (5%)

Query: 151  NILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAH 210
            ++  Q+K+    P V+T++ L+        I+ L ++Y +M   E E N +++ I+ +  
Sbjct: 806  DVFLQVKSTGCIPDVATYNFLLDAYGKSGKIDELFELYKEMSTHECEANTITHNIVISGL 865

Query: 211  AVA-RLYTVAETYVEALEK---SMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPN 266
              A  +    + Y + +     S T   +  L   +   G L + K L          PN
Sbjct: 866  VKAGNVDDALDLYYDLMSDRDFSPTACTYGPLIDGLSKSGRLYEAKQLFEGMLDYGCRPN 925

Query: 267  VRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGL 326
                 Y + I  FG+  +   A  L+  M         + Y+ ++   C  G +D+    
Sbjct: 926  C--AIYNILINGFGKAGEADAACALFKRMVKEGVRPDLKTYSVLVDCLCMVGRVDEGLHY 983

Query: 327  LKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLS 386
             KE+  +G  P+ + Y  +  G  KS+ +EE   AL L  ++ T++ +   TP L T  S
Sbjct: 984  FKELKESGLNPDVVCYNLIINGLGKSHRLEE---ALVLFNEMKTSRGI---TPDLYTYNS 1037

Query: 387  IIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKINDPN----LLRRMIL 442
            +I      G V  A  ++ E+++A      F +N LI+ Y  +    P     + + M+ 
Sbjct: 1038 LILNLGIAGMVEEAGKIYNEIQRAGLEPNVFTFNALIRGYSLS--GKPEHAYAVYQTMVT 1095

Query: 443  GGARPDAETYSLL 455
            GG  P+  TY  L
Sbjct: 1096 GGFSPNTGTYEQL 1108



 Score = 72.4 bits (176), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 106/486 (21%), Positives = 200/486 (41%), Gaps = 63/486 (12%)

Query: 18  MRE-GFPVHRGEIFHSINRLRKLQLNKRALEVMEWVIRERPYRPKELDYSYLLEFTIKNH 76
           MRE GF ++       I+ L K +    A+EV   +I E  +RP    YS L+    K  
Sbjct: 179 MREFGFVLNAYSYNGLIHLLLKSRFCTEAMEVYRRMILE-GFRPSLQTYSSLMVGLGKRR 237

Query: 77  GISQGEKLFCCIPKDYQNELLYNN-----LVIACLDK-GVIKLSLEYMKKMRVLGHSISY 130
            I     L     K+ +   L  N     + I  L + G I  + E +K+M   G     
Sbjct: 238 DIDSVMGLL----KEMETLGLKPNVYTFTICIRVLGRAGKINEAYEILKRMDDEGCGPDV 293

Query: 131 LVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSD 190
           + +  LI    +  +      +  +MK  +  P   T+  L+   +++ +++ + + +S+
Sbjct: 294 VTYTVLIDALCTARKLDCAKEVFEKMKTGRHKPDRVTYITLLDRFSDNRDLDSVKQFWSE 353

Query: 191 MKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAK 250
           M++    P+ V++ IL  A   A  +  A   ++ +       N  T + LI     + +
Sbjct: 354 MEKDGHVPDVVTFTILVDALCKAGNFGEAFDTLDVMRDQGILPNLHTYNTLICGLLRVHR 413

Query: 251 GKDLERIWATVQELP-NVRSKSYVLAIEAFGR---------------------------- 281
             D   ++  ++ L     + +Y++ I+ +G+                            
Sbjct: 414 LDDALELFGNMESLGVKPTAYTYIVFIDYYGKSGDSVSALETFEKMKTKGIAPNIVACNA 473

Query: 282 ----IAQVSR---AEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNG 334
               +A+  R   A++++  ++ +  +  +  YN ++  Y K G ID+A  LL EM  NG
Sbjct: 474 SLYSLAKAGRDREAKQIFYGLKDIGLVPDSVTYNMMMKCYSKVGEIDEAIKLLSEMMENG 533

Query: 335 CKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEK 394
           C+P+ I    L    +K++ V+E +K   + MK +  K      P + T  +++    + 
Sbjct: 534 CEPDVIVVNSLINTLYKADRVDEAWKMF-MRMKEMKLK------PTVVTYNTLLAGLGKN 586

Query: 395 GDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKINDP-----NLLRRMILGGARPDA 449
           G +  A  LFE + +      T  +NTL     K   ND       +L +M+  G  PD 
Sbjct: 587 GKIQEAIELFEGMVQKGCPPNTITFNTLFDCLCK---NDEVTLALKMLFKMMDMGCVPDV 643

Query: 450 ETYSLL 455
            TY+ +
Sbjct: 644 FTYNTI 649



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 57/270 (21%), Positives = 108/270 (40%), Gaps = 19/270 (7%)

Query: 98  YNNLVIACLDKGVIKLSLEYMKKMRVLG---HSISYLVFNRLIILNSSPGRRKTIPNILR 154
           YN L+   L    +  +LE    M  LG    + +Y+VF   I      G   +      
Sbjct: 401 YNTLICGLLRVHRLDDALELFGNMESLGVKPTAYTYIVF---IDYYGKSGDSVSALETFE 457

Query: 155 QMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHA-VA 213
           +MK   +AP++   +  +   A         +++  +K   + P+ V+Y ++   ++ V 
Sbjct: 458 KMKTKGIAPNIVACNASLYSLAKAGRDREAKQIFYGLKDIGLVPDSVTYNMMMKCYSKVG 517

Query: 214 RLYTVAETYVEALEKSMTGNNWSTLDVLII--LYGYLAKGKDLERIWATVQELPNVRSKS 271
            +    +   E +E      N    DV+++  L   L K   ++  W     +  ++ K 
Sbjct: 518 EIDEAIKLLSEMME------NGCEPDVIVVNSLINTLYKADRVDEAWKMFMRMKEMKLKP 571

Query: 272 YVLA----IEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLL 327
            V+     +   G+  ++  A EL+  M        T  +N++    CKN  +  A  +L
Sbjct: 572 TVVTYNTLLAGLGKNGKIQEAIELFEGMVQKGCPPNTITFNTLFDCLCKNDEVTLALKML 631

Query: 328 KEMSMNGCKPNAITYRHLALGCFKSNLVEE 357
            +M   GC P+  TY  +  G  K+  V+E
Sbjct: 632 FKMMDMGCVPDVFTYNTIIFGLVKNGQVKE 661


>gi|15222409|ref|NP_176529.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75205330|sp|Q9SH26.1|PP102_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g63400
 gi|6633845|gb|AAF19704.1|AC008047_11 F2K11.22 [Arabidopsis thaliana]
 gi|332195974|gb|AEE34095.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 577

 Score = 81.6 bits (200), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 90/408 (22%), Positives = 167/408 (40%), Gaps = 24/408 (5%)

Query: 55  ERPYRPKELDYSYLLEFTIKNHGISQGEKLF------CCIPKDYQNELLYNNLVIACLDK 108
           E  YRP  + ++ L+     ++  S+   L        C P    N + Y  +V     +
Sbjct: 183 EMGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQP----NLVTYGVVVNGLCKR 238

Query: 109 GVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTF 168
           G I L+   + KM       + ++++ +I             N+  +M+   V P+V T+
Sbjct: 239 GDIDLAFNLLNKMEAAKIEANVVIYSTVIDSLCKYRHEDDALNLFTEMENKGVRPNVITY 298

Query: 169 HILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAV-ARLYTVAETYVEALE 227
             L+    N        ++ SDM   ++ PN V++  L  A     +L    + Y E ++
Sbjct: 299 SSLISCLCNYERWSDASRLLSDMIERKINPNVVTFNALIDAFVKEGKLVEAEKLYDEMIK 358

Query: 228 KSMTGN--NWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQV 285
           +S+  +   +S+L     ++  L + K +  +  +    PNV   +Y   I  F +  ++
Sbjct: 359 RSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNV--VTYNTLINGFCKAKRI 416

Query: 286 SRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHL 345
               EL+ EM     +  T  Y ++I  + +    D A  + K+M  +G  PN +TY  L
Sbjct: 417 DEGVELFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSDGVHPNIMTYNTL 476

Query: 346 ALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFE 405
             G  K+  +E+     E     +   K+    P + T   +IE   + G V +  +LF 
Sbjct: 477 LDGLCKNGKLEKAMVVFE----YLQRSKME---PTIYTYNIMIEGMCKAGKVEDGWDLFC 529

Query: 406 ELKKANYTKYTFVYNTLIKAYVKAKIND--PNLLRRMILGGARPDAET 451
            L          +YNT+I  + +  + +    L R+M   G  PD+ T
Sbjct: 530 SLSLKGVKPDVIIYNTMISGFCRKGLKEEADALFRKMREDGPLPDSGT 577



 Score = 65.5 bits (158), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 51/187 (27%), Positives = 83/187 (44%), Gaps = 9/187 (4%)

Query: 271 SYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEM 330
           +Y + I  F R +Q+S A  L  +M  +    +    +S+++ YC    I  A  L+ +M
Sbjct: 122 TYNILINCFCRRSQISLALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQM 181

Query: 331 SMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEI 390
              G +P+ IT+  L  G F  N   E        + L+     R   P L T   ++  
Sbjct: 182 VEMGYRPDTITFTTLIHGLFLHNKASE-------AVALVDRMVQRGCQPNLVTYGVVVNG 234

Query: 391 FAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKINDP--NLLRRMILGGARPD 448
             ++GD+  A NL  +++ A       +Y+T+I +  K +  D   NL   M   G RP+
Sbjct: 235 LCKRGDIDLAFNLLNKMEAAKIEANVVIYSTVIDSLCKYRHEDDALNLFTEMENKGVRPN 294

Query: 449 AETYSLL 455
             TYS L
Sbjct: 295 VITYSSL 301



 Score = 58.5 bits (140), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 102/495 (20%), Positives = 196/495 (39%), Gaps = 80/495 (16%)

Query: 34  NRLRKLQLNKRALEVMEWVIRERPYRPKELDYSYLLEFTIK----NHGISQGEKLFCCIP 89
           N L  ++L+  A+ +   +++ RP  P   +++ LL    K    +  IS GEK+     
Sbjct: 59  NGLHSMKLDD-AIGLFGGMVKSRPL-PSIFEFNKLLSAIAKMKKFDLVISLGEKM---QR 113

Query: 90  KDYQNELLYNNLVIACL-DKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKT 148
               + L   N++I C   +  I L+L  + KM  LG+  S +  + L+       R   
Sbjct: 114 LGISHNLYTYNILINCFCRRSQISLALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISD 173

Query: 149 IPNILRQM-----KADKVA------------------------------PHVSTFHILMK 173
              ++ QM     + D +                               P++ T+ +++ 
Sbjct: 174 AVALVDQMVEMGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVN 233

Query: 174 IEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGN 233
                 +I+    + + M+ +++E N V Y  +  +    R    A      +E      
Sbjct: 234 GLCKRGDIDLAFNLLNKMEAAKIEANVVIYSTVIDSLCKYRHEDDALNLFTEMENKGVRP 293

Query: 234 NWSTLDVLIILYGYLAKGKDLERIWATVQEL---PNVRSKSYVLAIEAFGRIAQVSRAEE 290
           N  T   LI       +  D  R+ + + E    PNV   ++   I+AF +  ++  AE+
Sbjct: 294 NVITYSSLISCLCNYERWSDASRLLSDMIERKINPNV--VTFNALIDAFVKEGKLVEAEK 351

Query: 291 LWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCF 350
           L+ EM           Y+S+I+ +C +  +D+A  + + M    C PN +TY  L  G  
Sbjct: 352 LYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLINGFC 411

Query: 351 KSNLVEEG--------------------------FKALELGMKLITTKKVRSST--PWLE 382
           K+  ++EG                          F+A +     +  K++ S    P + 
Sbjct: 412 KAKRIDEGVELFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSDGVHPNIM 471

Query: 383 TTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKA-KINDP-NLLRRM 440
           T  ++++   + G +  A  +FE L+++      + YN +I+   KA K+ D  +L   +
Sbjct: 472 TYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWDLFCSL 531

Query: 441 ILGGARPDAETYSLL 455
            L G +PD   Y+ +
Sbjct: 532 SLKGVKPDVIIYNTM 546


>gi|218190151|gb|EEC72578.1| hypothetical protein OsI_06020 [Oryza sativa Indica Group]
          Length = 738

 Score = 81.6 bits (200), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 81/349 (23%), Positives = 147/349 (42%), Gaps = 12/349 (3%)

Query: 16  SWMRE-GFPVHRGEIFHSINRLRKLQLNKRALEVMEWVIRERPYRPKELDYSYLLEFTIK 74
           S MRE G P +       ++ L K +  ++A+EV + + RER  R     ++ ++    K
Sbjct: 377 SEMREHGIPPNATVYNAYLDGLLKARCTEKAVEVYQRMKRER-CRANTETFTLMINVYGK 435

Query: 75  NHGISQGEKLF------CCIPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSI 128
                   K+F       C P    N   Y  LV A   +G+ + + E  ++M+  GH  
Sbjct: 436 AKQPMSSMKVFNEMKSIGCKP----NICTYTALVNAFAREGLCEKAEEVFEEMQQAGHEP 491

Query: 129 SYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVY 188
               +N L+   S  G  +    I   M+     P  ++++IL+         E    V+
Sbjct: 492 DVYAYNALMEAYSRAGLPQGASEIFSLMQHMGCEPDRASYNILVDAYGRAGLHEDAEAVF 551

Query: 189 SDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYL 248
            ++K+  + P   S+ +L  AHA +   T  E  +  L KS    +   L+ ++  Y   
Sbjct: 552 EELKQRGMSPTMKSHMLLLAAHARSGNATRCEEVMAQLHKSGLTPDTFALNAMLNAYARA 611

Query: 249 AKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYN 308
            +  D+ER+ A ++   +    +Y +A+ A+GR   V R E  +  + +         + 
Sbjct: 612 GRLDDMERLLAAMERRGDADVGTYNVAVNAYGRAGYVGRMEAAFAAVAARGLAADVVTWT 671

Query: 309 SVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEE 357
           + +  Y +     +  G+++EM   GC P+A T R L   C     VE+
Sbjct: 672 ARMGAYARRKEYGRCVGMVEEMVDAGCYPDAGTARVLLAACSDERQVEQ 720



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 65/299 (21%), Positives = 126/299 (42%), Gaps = 13/299 (4%)

Query: 160 KVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVA 219
           +  P   T+ +L++   N  ++     V S+M+   + PN   Y         AR    A
Sbjct: 348 QCVPTEDTYALLLRAYCNAGSLHRAEGVISEMREHGIPPNATVYNAYLDGLLKARCTEKA 407

Query: 220 ETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQEL---PNVRSKSYVLAI 276
               + +++     N  T  ++I +YG   +     +++  ++ +   PN+   +Y   +
Sbjct: 408 VEVYQRMKRERCRANTETFTLMINVYGKAKQPMSSMKVFNEMKSIGCKPNI--CTYTALV 465

Query: 277 EAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCK 336
            AF R     +AEE++ EMQ          YN+++  Y + G    AS +   M   GC+
Sbjct: 466 NAFAREGLCEKAEEVFEEMQQAGHEPDVYAYNALMEAYSRAGLPQGASEIFSLMQHMGCE 525

Query: 337 PNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGD 396
           P+  +Y  L     ++ L E+     E         K R  +P +++ + ++   A  G+
Sbjct: 526 PDRASYNILVDAYGRAGLHEDAEAVFE-------ELKQRGMSPTMKSHMLLLAAHARSGN 578

Query: 397 VGNAENLFEELKKANYTKYTFVYNTLIKAYVKA-KINDPNLLRRMILGGARPDAETYSL 454
               E +  +L K+  T  TF  N ++ AY +A +++D   L   +      D  TY++
Sbjct: 579 ATRCEEVMAQLHKSGLTPDTFALNAMLNAYARAGRLDDMERLLAAMERRGDADVGTYNV 637



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 50/214 (23%), Positives = 94/214 (43%), Gaps = 30/214 (14%)

Query: 272 YVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMS 331
           Y L IE++G+  Q+++AE +++ +   + +   + Y  ++  YC  G + +A G++ EM 
Sbjct: 321 YNLLIESYGKKRQLNKAESIYMALLEAQCVPTEDTYALLLRAYCNAGSLHRAEGVISEMR 380

Query: 332 MNGCKPNAITYRHLALGCFKSNLVEEGFKALEL--------------------------- 364
            +G  PNA  Y     G  K+   E+  +  +                            
Sbjct: 381 EHGIPPNATVYNAYLDGLLKARCTEKAVEVYQRMKRERCRANTETFTLMINVYGKAKQPM 440

Query: 365 -GMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLI 423
             MK+    K     P + T  +++  FA +G    AE +FEE+++A +    + YN L+
Sbjct: 441 SSMKVFNEMKSIGCKPNICTYTALVNAFAREGLCEKAEEVFEEMQQAGHEPDVYAYNALM 500

Query: 424 KAYVKAKI--NDPNLLRRMILGGARPDAETYSLL 455
           +AY +A +      +   M   G  PD  +Y++L
Sbjct: 501 EAYSRAGLPQGASEIFSLMQHMGCEPDRASYNIL 534



 Score = 63.2 bits (152), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 78/437 (17%), Positives = 178/437 (40%), Gaps = 28/437 (6%)

Query: 33  INRLRKLQLNKR---ALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQGEKLFC--- 86
           +N   + ++NK+    + V EW++    +RP  + Y+ L+E   K   +++ E ++    
Sbjct: 286 VNVAVQFRMNKKWDLIIPVCEWILYRSSFRPDIICYNLLIESYGKKRQLNKAESIYMALL 345

Query: 87  ---CIPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLI--ILNS 141
              C+P     E  Y  L+ A  + G +  +   + +MR  G   +  V+N  +  +L +
Sbjct: 346 EAQCVP----TEDTYALLLRAYCNAGSLHRAEGVISEMREHGIPPNATVYNAYLDGLLKA 401

Query: 142 SPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEV 201
               +     + ++MK ++   +  TF +++ +          MKV+++MK    +PN  
Sbjct: 402 RCTEKAV--EVYQRMKRERCRANTETFTLMINVYGKAKQPMSSMKVFNEMKSIGCKPNIC 459

Query: 202 SYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATV 261
           +Y  L  A A   L   AE   E ++++    +    + L+  Y      +    I++ +
Sbjct: 460 TYTALVNAFAREGLCEKAEEVFEEMQQAGHEPDVYAYNALMEAYSRAGLPQGASEIFSLM 519

Query: 262 QELPNVRSK-SYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFI 320
           Q +     + SY + ++A+GR      AE ++ E++        + +  +++ + ++G  
Sbjct: 520 QHMGCEPDRASYNILVDAYGRAGLHEDAEAVFEELKQRGMSPTMKSHMLLLAAHARSGNA 579

Query: 321 DKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPW 380
            +   ++ ++  +G  P+      +     ++  +++        M+ +     R     
Sbjct: 580 TRCEEVMAQLHKSGLTPDTFALNAMLNAYARAGRLDD--------MERLLAAMERRGDAD 631

Query: 381 LETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAK--INDPNLLR 438
           + T    +  +   G VG  E  F  +           +   + AY + K       ++ 
Sbjct: 632 VGTYNVAVNAYGRAGYVGRMEAAFAAVAARGLAADVVTWTARMGAYARRKEYGRCVGMVE 691

Query: 439 RMILGGARPDAETYSLL 455
            M+  G  PDA T  +L
Sbjct: 692 EMVDAGCYPDAGTARVL 708


>gi|356561677|ref|XP_003549106.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g62910-like [Glycine max]
          Length = 511

 Score = 81.6 bits (200), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 94/435 (21%), Positives = 175/435 (40%), Gaps = 18/435 (4%)

Query: 30  FHSINRLRKLQLNKRALEVMEWVIRERP--YRPKELDYSYLLEFTIKNHGISQGEKLFCC 87
           FH  N L  L  NK    V+    +  P    P     S L+        I+    +F  
Sbjct: 58  FHFNNILSSLVNNKHYPTVISLFKQFEPNGITPDLCTLSILINCFCHQAHITLAFSVFAN 117

Query: 88  IPKD--YQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGR 145
           I K   + N +  N L+     +G IK +L +  ++   G  +  + +  LI      G 
Sbjct: 118 ILKRGFHPNAITLNTLIKGLCFRGEIKKALYFHDQLVAQGFQLDQVSYGTLINGLCKTGE 177

Query: 146 RKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCI 205
            K +  +LR+++   V P V  ++ ++     +  +     VYS+M    + P+ V+Y  
Sbjct: 178 TKAVARLLRKLEGHSVKPDVVMYNTIINSLCKNKLLGDACDVYSEMIVKGISPDVVTYTT 237

Query: 206 LATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQEL- 264
           L     +      A + +  ++      N  T ++LI       K K+ + + A + +  
Sbjct: 238 LIHGFCIMGHLKEAFSLLNEMKLKNINPNVCTFNILIDALSKEGKMKEAKILLAVMMKAC 297

Query: 265 --PNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDK 322
             P+V   +Y   I+ +  + +V  A+ ++  M         + Y ++I+  CK   +D+
Sbjct: 298 IKPDVF--TYNSLIDGYFLVDEVKHAKYVFYSMAQRGVTPDVQCYTNMINGLCKTKMVDE 355

Query: 323 ASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLE 382
           A  L +EM      P+ +TY  L  G  K++        LE  + L    K +   P + 
Sbjct: 356 AMSLFEEMKHKNMIPDIVTYNSLIDGLCKNH-------HLERAIALCKRMKEQGIQPDVY 408

Query: 383 TTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKINDP--NLLRRM 440
           +   +++   + G + +A+ +F+ L    Y      Y  LI    KA   D   +L  +M
Sbjct: 409 SYTILLDGLCKSGRLEDAKEIFQRLLAKGYHLNVHAYTVLINRLCKAGFFDEALDLKSKM 468

Query: 441 ILGGARPDAETYSLL 455
              G  PDA T+ ++
Sbjct: 469 EDKGCMPDAVTFDII 483


>gi|125527955|gb|EAY76069.1| hypothetical protein OsI_03997 [Oryza sativa Indica Group]
          Length = 684

 Score = 81.6 bits (200), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 93/413 (22%), Positives = 173/413 (41%), Gaps = 35/413 (8%)

Query: 58  YRPKELDYSYLLEFTIKNHGISQGEKLFC------CIPKDYQNELLYNNLVIACLDKGVI 111
           ++P  + Y+ +L+           E+LF       C+P    NE+ ++ LV      G++
Sbjct: 246 FQPDTVSYTTVLKGLCAAKRWEDVEELFAEMMEKNCMP----NEVTFDMLVRFFCRGGMV 301

Query: 112 KLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHIL 171
           + +++ +++M   G + +  + N +I      GR       L  M +   +P   ++  +
Sbjct: 302 ERAIQVLEQMSGHGCAANTTLCNIVINTICKQGRVDDAFQFLNNMGSYGCSPDTISYTTV 361

Query: 172 MKIEANDHNIEGLMKVYSDMKRSEVEPNEVSY----CILATAHAVARLYTVAETYVEALE 227
           +K        E   ++  +M R    PNEV++    CIL     + +    A   +E + 
Sbjct: 362 LKGLCRAERWEDAKELLKEMVRKNCPPNEVTFNTFICILCQKGLIEQ----ATMLIEQMS 417

Query: 228 KSMTGNNWSTLDVLIILYGYLAKGK---DLERIWATVQELPNVRSKSYVLAIEAFGRIAQ 284
           +     N  T + L+   G+  +G+    LE  ++   + PN  + +Y   +       +
Sbjct: 418 EHGCEVNIVTYNALV--NGFCVQGRVDSALELFYSMPCK-PN--TITYTTLLTGLCNAER 472

Query: 285 VSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRH 344
           +  A EL  EM           +N ++S +C+ G +D+A  L+++M  +GC PN ITY  
Sbjct: 473 LDAAAELLAEMLQKDCAPNVVTFNVLVSFFCQKGLMDEAIELVEQMMEHGCTPNLITYNT 532

Query: 345 LALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLF 404
           L  G       EE   ALEL   L++       +P + T  SII + + +  V  A  +F
Sbjct: 533 LLDGITNDCNSEE---ALELLHGLVSN----GVSPDIVTYSSIIGVLSREDRVEEAIKMF 585

Query: 405 EELKKANYTKYTFVYNTLIKAYVKAKINDP--NLLRRMILGGARPDAETYSLL 455
             ++         +YN ++ A  K    D   +    M+  G  P+  TY  L
Sbjct: 586 HIVQDLGMRPKAVIYNKILLALCKRCNTDGAIDFFAYMVSNGCMPNELTYITL 638



 Score = 73.2 bits (178), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 87/428 (20%), Positives = 164/428 (38%), Gaps = 81/428 (18%)

Query: 98  YNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLI-ILNSSPGRRKTIPNILRQM 156
           Y  ++    D+G +  +L  +  M   G   S + +  L+  +  S G  + +  +L +M
Sbjct: 148 YTPIIRGLCDRGRVGEALSLLDDMLHRGCQPSVVTYTVLLEAVCKSTGFGQAM-EVLDEM 206

Query: 157 KADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSY-CILATAHAVARL 215
           +A    P++ T+++++     +  ++   +  + +     +P+ VSY  +L    A  R 
Sbjct: 207 RAKGCTPNIVTYNVIINGMCREGRVDDAREFLNRLSSYGFQPDTVSYTTVLKGLCAAKRW 266

Query: 216 YTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELP---------- 265
             V E + E +EK+   N   T D+L+    +  +G  +ER    ++++           
Sbjct: 267 EDVEELFAEMMEKNCMPNEV-TFDMLV---RFFCRGGMVERAIQVLEQMSGHGCAANTTL 322

Query: 266 -----NVRSK------------------------SYVLAIEAFGRIAQVSRAEELWLEMQ 296
                N   K                        SY   ++   R  +   A+EL  EM 
Sbjct: 323 CNIVINTICKQGRVDDAFQFLNNMGSYGCSPDTISYTTVLKGLCRAERWEDAKELLKEMV 382

Query: 297 SVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVE 356
                     +N+ I + C+ G I++A+ L+++MS +GC+ N +TY  L  G      V+
Sbjct: 383 RKNCPPNEVTFNTFICILCQKGLIEQATMLIEQMSEHGCEVNIVTYNALVNGFCVQGRVD 442

Query: 357 EGFKA-------------------------LELGMKLITTKKVRSSTPWLETTLSIIEIF 391
              +                          L+   +L+     +   P + T   ++  F
Sbjct: 443 SALELFYSMPCKPNTITYTTLLTGLCNAERLDAAAELLAEMLQKDCAPNVVTFNVLVSFF 502

Query: 392 AEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKINDPN------LLRRMILGGA 445
            +KG +  A  L E++ +   T     YNTL+        ND N      LL  ++  G 
Sbjct: 503 CQKGLMDEAIELVEQMMEHGCTPNLITYNTLLDGIT----NDCNSEEALELLHGLVSNGV 558

Query: 446 RPDAETYS 453
            PD  TYS
Sbjct: 559 SPDIVTYS 566



 Score = 62.8 bits (151), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 76/371 (20%), Positives = 145/371 (39%), Gaps = 55/371 (14%)

Query: 125 GHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGL 184
           G ++    +N L+      G+      ++  M    VAP   T+  +++   +   +   
Sbjct: 108 GTAVDVFAYNTLVAGYCRYGQLDAARRLIASMP---VAPDAYTYTPIIRGLCDRGRVGEA 164

Query: 185 MKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLI-- 242
           + +  DM     +P+ V+Y +L  A   +  +  A   ++ +       N  T +V+I  
Sbjct: 165 LSLLDDMLHRGCQPSVVTYTVLLEAVCKSTGFGQAMEVLDEMRAKGCTPNIVTYNVIING 224

Query: 243 --------------------------ILYGYLAKG-------KDLERIWATVQE---LPN 266
                                     + Y  + KG       +D+E ++A + E   +PN
Sbjct: 225 MCREGRVDDAREFLNRLSSYGFQPDTVSYTTVLKGLCAAKRWEDVEELFAEMMEKNCMPN 284

Query: 267 VRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGL 326
               ++ + +  F R   V RA ++  +M        T   N VI+  CK G +D A   
Sbjct: 285 --EVTFDMLVRFFCRGGMVERAIQVLEQMSGHGCAANTTLCNIVINTICKQGRVDDAFQF 342

Query: 327 LKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTL- 385
           L  M   GC P+ I+Y  +  G  ++   E+  + L+        + VR + P  E T  
Sbjct: 343 LNNMGSYGCSPDTISYTTVLKGLCRAERWEDAKELLK--------EMVRKNCPPNEVTFN 394

Query: 386 SIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAY-VKAKINDPNLLRRMILGG 444
           + I I  +KG +  A  L E++ +         YN L+  + V+ +++  + L       
Sbjct: 395 TFICILCQKGLIEQATMLIEQMSEHGCEVNIVTYNALVNGFCVQGRVD--SALELFYSMP 452

Query: 445 ARPDAETYSLL 455
            +P+  TY+ L
Sbjct: 453 CKPNTITYTTL 463



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 58/278 (20%), Positives = 115/278 (41%), Gaps = 30/278 (10%)

Query: 94  NELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNIL 153
           NE+ +N  +     KG+I+ +   +++M   G  ++ + +N L+      GR  +   + 
Sbjct: 389 NEVTFNTFICILCQKGLIEQATMLIEQMSEHGCEVNIVTYNALVNGFCVQGRVDSALELF 448

Query: 154 RQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVA 213
             M      P+  T+  L+    N   ++   ++ ++M + +  PN V++ +L +     
Sbjct: 449 YSMPCK---PNTITYTTLLTGLCNAERLDAAAELLAEMLQKDCAPNVVTFNVLVSFFCQK 505

Query: 214 RLYTVAETYVEAL-EKSMTGN--NWSTL-----------DVLIILYGYLAKGKDLERIWA 259
            L   A   VE + E   T N   ++TL           + L +L+G ++ G        
Sbjct: 506 GLMDEAIELVEQMMEHGCTPNLITYNTLLDGITNDCNSEEALELLHGLVSNGVS------ 559

Query: 260 TVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGF 319
                P++ + S ++ +    R  +V  A +++  +Q +        YN ++   CK   
Sbjct: 560 -----PDIVTYSSIIGV--LSREDRVEEAIKMFHIVQDLGMRPKAVIYNKILLALCKRCN 612

Query: 320 IDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEE 357
            D A      M  NGC PN +TY  L  G    + ++E
Sbjct: 613 TDGAIDFFAYMVSNGCMPNELTYITLIEGLANEDFLKE 650


>gi|297823043|ref|XP_002879404.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297325243|gb|EFH55663.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 605

 Score = 81.6 bits (200), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 86/370 (23%), Positives = 167/370 (45%), Gaps = 34/370 (9%)

Query: 101 LVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNS--SPGRRKTIPNILRQMKA 158
            ++A   +  I L LE+ ++M   G  I+  V++  I++      G  +    ++++   
Sbjct: 176 FLVAAKKRRRIDLCLEFFRRMVDSGVKIT--VYSLTIVVEGLCRRGEVEKSKKLIKEFSG 233

Query: 159 DKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAV-ARLYT 217
             + P   T++ ++       +  G+ K+   MK+  V  N+V+Y +L        ++  
Sbjct: 234 KGIKPEAYTYNTIINAYLKHRDFSGVEKILKVMKKDGVVYNKVTYTLLIELSVKNGKMND 293

Query: 218 VAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPN----VRSKSYV 273
           V + + E  E+ +     S + V   L  +  +  +++R +    EL        S +Y 
Sbjct: 294 VEKLFDEMRERGIE----SDIHVYTSLISWNCRKGNIKRAFLLFDELTEKGLLPSSHTYG 349

Query: 274 LAIEAFGRIAQVSRAEELWLEMQSVKQLKATE-QYNSVISVYCKNGFIDKASGLLKEMSM 332
             I+   ++ ++  AE L  EMQS K +  T+  +N++I+ YC+ G ID+AS +   M  
Sbjct: 350 ALIDGVCKVGEMGAAEILMNEMQS-KGVNITQVVFNTLINGYCRKGMIDEASMIYDVMEK 408

Query: 333 NGCKPNAITYRHLALGCF-KSNLVEEG----FKALELGMKLITTKKVRSSTPWLETTLSI 387
            G + +  T   +A  CF +    +E     F+ +E G++L T            +  ++
Sbjct: 409 KGFQADVFTCNTIA-SCFNRLKRYDEAKQWLFRMMEGGVRLSTV-----------SYTNL 456

Query: 388 IEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVK-AKINDP-NLLRRMILGGA 445
           I+++ ++G+V  A+ LF E+           YN +I AY K  K+ +   L   M   G 
Sbjct: 457 IDVYCKEGNVEEAKRLFVEMSSKEVQPNAITYNVMIYAYCKQGKVKEARKLWANMKANGM 516

Query: 446 RPDAETYSLL 455
            PD+ TY+ L
Sbjct: 517 DPDSYTYTSL 526



 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 85/373 (22%), Positives = 150/373 (40%), Gaps = 16/373 (4%)

Query: 59  RPKELDYSYLLEFTIKNHGISQGEKLFCCIPKD--YQNELLYNNLVIACLDKGVIKLSLE 116
           +P+   Y+ ++   +K+   S  EK+   + KD    N++ Y  L+   +  G +    +
Sbjct: 237 KPEAYTYNTIINAYLKHRDFSGVEKILKVMKKDGVVYNKVTYTLLIELSVKNGKMNDVEK 296

Query: 117 YMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEA 176
              +MR  G      V+  LI  N   G  K    +  ++    + P   T+  L+    
Sbjct: 297 LFDEMRERGIESDIHVYTSLISWNCRKGNIKRAFLLFDELTEKGLLPSSHTYGALIDGVC 356

Query: 177 NDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWS 236
               +     + ++M+   V   +V +  L   +    +   A    + +EK     +  
Sbjct: 357 KVGEMGAAEILMNEMQSKGVNITQVVFNTLINGYCRKGMIDEASMIYDVMEKKGFQADVF 416

Query: 237 TLDVLIILYGYLAKGKDLERIWATVQELPNVR--SKSYVLAIEAFGRIAQVSRAEELWLE 294
           T + +   +  L K  D  + W        VR  + SY   I+ + +   V  A+ L++E
Sbjct: 417 TCNTIASCFNRL-KRYDEAKQWLFRMMEGGVRLSTVSYTNLIDVYCKEGNVEEAKRLFVE 475

Query: 295 MQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALG-CFKSN 353
           M S +       YN +I  YCK G + +A  L   M  NG  P++ TY  L  G C   N
Sbjct: 476 MSSKEVQPNAITYNVMIYAYCKQGKVKEARKLWANMKANGMDPDSYTYTSLIHGECIADN 535

Query: 354 LVEEGFKAL-ELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANY 412
            V+E  +   E+G+K +    V        T   +I   ++ G    A  L++E+K+  Y
Sbjct: 536 -VDEAMRLFSEMGLKGLDQNSV--------TYTVMISGLSKAGKSDEAFGLYDEIKRKGY 586

Query: 413 TKYTFVYNTLIKA 425
           T    VY  LI +
Sbjct: 587 TIDNKVYTALIGS 599



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 79/343 (23%), Positives = 138/343 (40%), Gaps = 20/343 (5%)

Query: 98  YNNLVIACLD----KGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNIL 153
           YN ++ A L      GV K+ L+ MKK  V+ + ++Y +   LI L+   G+   +  + 
Sbjct: 243 YNTIINAYLKHRDFSGVEKI-LKVMKKDGVVYNKVTYTL---LIELSVKNGKMNDVEKLF 298

Query: 154 RQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVA 213
            +M+   +   +  +  L+       NI+    ++ ++    + P+  +Y   A    V 
Sbjct: 299 DEMRERGIESDIHVYTSLISWNCRKGNIKRAFLLFDELTEKGLLPSSHTYG--ALIDGVC 356

Query: 214 RLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGK-DLERIWATVQELPNVRSKSY 272
           ++  +    +   E    G N + +    ++ GY  KG  D   +   V E    ++  +
Sbjct: 357 KVGEMGAAEILMNEMQSKGVNITQVVFNTLINGYCRKGMIDEASMIYDVMEKKGFQADVF 416

Query: 273 VLAIEA--FGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEM 330
                A  F R+ +   A++    M       +T  Y ++I VYCK G +++A  L  EM
Sbjct: 417 TCNTIASCFNRLKRYDEAKQWLFRMMEGGVRLSTVSYTNLIDVYCKEGNVEEAKRLFVEM 476

Query: 331 SMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEI 390
           S    +PNAITY  +     K   V+E         KL    K     P   T  S+I  
Sbjct: 477 SSKEVQPNAITYNVMIYAYCKQGKVKE-------ARKLWANMKANGMDPDSYTYTSLIHG 529

Query: 391 FAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKIND 433
                +V  A  LF E+      + +  Y  +I    KA  +D
Sbjct: 530 ECIADNVDEAMRLFSEMGLKGLDQNSVTYTVMISGLSKAGKSD 572


>gi|15224262|ref|NP_179484.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75099137|sp|O64624.1|PP163_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g18940
 gi|3004555|gb|AAC09028.1| putative salt-inducible protein [Arabidopsis thaliana]
 gi|15983785|gb|AAL10489.1| At2g18940/F19F24.14 [Arabidopsis thaliana]
 gi|38564280|gb|AAR23719.1| At2g18940/F19F24.14 [Arabidopsis thaliana]
 gi|330251736|gb|AEC06830.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 822

 Score = 81.6 bits (200), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 90/428 (21%), Positives = 189/428 (44%), Gaps = 28/428 (6%)

Query: 43  KRALEVMEWVIRERPYRPKELDYSYLLEFTIKNHG----ISQGEKLFCCIPKDYQNELL- 97
           +RA+ + EW++        +LD+  ++E  ++  G     S   KL   IP   Q  LL 
Sbjct: 153 ERAVFLFEWLVLSSNSGALKLDHQ-VIEIFVRILGRESQYSVAAKLLDKIP--LQEYLLD 209

Query: 98  ---YNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRR-KTIPNIL 153
              Y  ++ A    G  + +++  ++M+ +G S + + +N ++ +    GR  + I  +L
Sbjct: 210 VRAYTTILHAYSRTGKYEKAIDLFERMKEMGPSPTLVTYNVILDVFGKMGRSWRKILGVL 269

Query: 154 RQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVA 213
            +M++  +     T   ++   A +  +    + ++++K    EP  V+Y  L      A
Sbjct: 270 DEMRSKGLKFDEFTCSTVLSACAREGLLREAKEFFAELKSCGYEPGTVTYNALLQVFGKA 329

Query: 214 RLYTVAETYVEALEKSMTGNNWSTLDVLIILY---GYLAKGKDLERIWATVQELPNVRSK 270
            +YT A + ++ +E++    +  T + L+  Y   G+  +   +  +      +PN  + 
Sbjct: 330 GVYTEALSVLKEMEENSCPADSVTYNELVAAYVRAGFSKEAAGVIEMMTKKGVMPN--AI 387

Query: 271 SYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEM 330
           +Y   I+A+G+  +   A +L+  M+    +  T  YN+V+S+  K    ++   +L +M
Sbjct: 388 TYTTVIDAYGKAGKEDEALKLFYSMKEAGCVPNTCTYNAVLSLLGKKSRSNEMIKMLCDM 447

Query: 331 SMNGCKPNAITYRHLALGCFKSNLVEEGFKALE-LGMKLITTKKVRSSTPWLETTLSIIE 389
             NGC PN  T+  +   C        G K ++    ++    K     P  +T  ++I 
Sbjct: 448 KSNGCSPNRATWNTMLALC--------GNKGMDKFVNRVFREMKSCGFEPDRDTFNTLIS 499

Query: 390 IFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKI--NDPNLLRRMILGGARP 447
            +   G   +A  ++ E+ +A +      YN L+ A  +     +  N++  M   G +P
Sbjct: 500 AYGRCGSEVDASKMYGEMTRAGFNACVTTYNALLNALARKGDWRSGENVISDMKSKGFKP 559

Query: 448 DAETYSLL 455
              +YSL+
Sbjct: 560 TETSYSLM 567



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 78/391 (19%), Positives = 157/391 (40%), Gaps = 28/391 (7%)

Query: 51  WVIRERPYRPKELDYSYLLEFTIKNHGISQGEKLFC------CIPKDYQNELLYNNLVIA 104
           + ++E    P    Y+ +L    K    ++  K+ C      C P    N   +N ++  
Sbjct: 410 YSMKEAGCVPNTCTYNAVLSLLGKKSRSNEMIKMLCDMKSNGCSP----NRATWNTMLAL 465

Query: 105 CLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPH 164
           C +KG+ K      ++M+  G       FN LI      G       +  +M        
Sbjct: 466 CGNKGMDKFVNRVFREMKSCGFEPDRDTFNTLISAYGRCGSEVDASKMYGEMTRAGFNAC 525

Query: 165 VSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVE 224
           V+T++ L+   A   +      V SDMK    +P E SY ++   +A    Y   E    
Sbjct: 526 VTTYNALLNALARKGDWRSGENVISDMKSKGFKPTETSYSLMLQCYAKGGNYLGIERIEN 585

Query: 225 ALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQEL---PNVRSKSYVLAIEAFGR 281
            +++     +W  L  L++           ER +   ++    P++   + +L+I  F R
Sbjct: 586 RIKEGQIFPSWMLLRTLLLANFKCRALAGSERAFTLFKKHGYKPDMVIFNSMLSI--FTR 643

Query: 282 IAQVSRAEELWLEMQSVKQLKATEQ---YNSVISVYCKNGFIDKASGLLKEMSMNGCKPN 338
                +AE +   ++S+++   +     YNS++ +Y + G   KA  +LK +  +  KP+
Sbjct: 644 NNMYDQAEGI---LESIREDGLSPDLVTYNSLMDMYVRRGECWKAEEILKTLEKSQLKPD 700

Query: 339 AITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVG 398
            ++Y  +  G  +  L++E  + L      +T + +R   P + T  + +  +   G   
Sbjct: 701 LVSYNTVIKGFCRRGLMQEAVRML----SEMTERGIR---PCIFTYNTFVSGYTAMGMFA 753

Query: 399 NAENLFEELKKANYTKYTFVYNTLIKAYVKA 429
             E++ E + K +       +  ++  Y +A
Sbjct: 754 EIEDVIECMAKNDCRPNELTFKMVVDGYCRA 784


>gi|242036829|ref|XP_002465809.1| hypothetical protein SORBIDRAFT_01g046200 [Sorghum bicolor]
 gi|241919663|gb|EER92807.1| hypothetical protein SORBIDRAFT_01g046200 [Sorghum bicolor]
          Length = 649

 Score = 81.6 bits (200), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 90/406 (22%), Positives = 182/406 (44%), Gaps = 26/406 (6%)

Query: 59  RPKELDYSYLLEFTIKNHGISQGEKLF-----CCIPKDYQNELLYNNLVIACLDKGVIKL 113
           +P  + ++ +L+   K+    + +++F     C +  D ++   +N L+      G ++ 
Sbjct: 224 KPGIVTFNSVLKGLCKHRRFDKAKEVFRAMDQCSVAPDVRS---FNILIGGFCRVGEVEE 280

Query: 114 SLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMK 173
           ++++ K+M+  G +   + F+ LI L S+ G+       LR+MK   + P    + +++ 
Sbjct: 281 AMKFYKEMQQRGVTPDVVSFSCLIGLFSTRGKMDHAAAYLREMKGLGLVPDGVIYTMVIG 340

Query: 174 IEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVA-RLYTVAETYVEALEKSMTG 232
                 ++   ++V  +M      P+ V+Y  L        RL    E   E  E+ +T 
Sbjct: 341 GFCRAGSMSEALRVRDEMVGLGCLPDVVTYNTLLNGLCKQHRLLDAEELLNEMKERGVT- 399

Query: 233 NNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSKSYVLA----IEAFGRIAQVSRA 288
            +  T   LI  +GY   G + E+       L + R +  V+A    I+   R   +++A
Sbjct: 400 PDLCTFTTLI--HGYCRDG-NFEKALQLFDTLLHQRLRPDVVAYNSLIDGMCRKGDLAKA 456

Query: 289 EELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALG 348
            ELW +M + +       Y+ +I  +C+ G +++A G L EM   G  PN +TY  +  G
Sbjct: 457 NELWDDMHAREIFPNHVTYSILIDSHCEKGQVEEAFGFLDEMVSKGNLPNIMTYNSIIKG 516

Query: 349 CFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELK 408
             +S  V++G + L+  M+        +  P L T  ++I  + ++ ++  A N+F  ++
Sbjct: 517 YCRSGNVKKGQQFLQKMMQ-------DNILPDLITFNTLIHGYIKEENMHGAFNVFNIME 569

Query: 409 KANYTKYTFVYNTLIKAYV-KAKINDPN-LLRRMILGGARPDAETY 452
           K         YN +I  +  +  + +   + ++M   G  PD  TY
Sbjct: 570 KEMVQPDAVTYNMIINGFSEQGNMEEAGRVFKKMGASGIEPDRYTY 615



 Score = 45.1 bits (105), Expect = 0.071,   Method: Compositional matrix adjust.
 Identities = 53/277 (19%), Positives = 114/277 (41%), Gaps = 9/277 (3%)

Query: 87  CIPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRR 146
           C+P    + + YN L+     +  +  + E + +M+  G +     F  LI      G  
Sbjct: 363 CLP----DVVTYNTLLNGLCKQHRLLDAEELLNEMKERGVTPDLCTFTTLIHGYCRDGNF 418

Query: 147 KTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCIL 206
           +    +   +   ++ P V  ++ L+       ++    +++ DM   E+ PN V+Y IL
Sbjct: 419 EKALQLFDTLLHQRLRPDVVAYNSLIDGMCRKGDLAKANELWDDMHAREIFPNHVTYSIL 478

Query: 207 ATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILY---GYLAKGKDLERIWATVQE 263
             +H        A  +++ +       N  T + +I  Y   G + KG+   +       
Sbjct: 479 IDSHCEKGQVEEAFGFLDEMVSKGNLPNIMTYNSIIKGYCRSGNVKKGQQFLQKMMQDNI 538

Query: 264 LPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKA 323
           LP++   ++   I  + +   +  A  ++  M+          YN +I+ + + G +++A
Sbjct: 539 LPDL--ITFNTLIHGYIKEENMHGAFNVFNIMEKEMVQPDAVTYNMIINGFSEQGNMEEA 596

Query: 324 SGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFK 360
             + K+M  +G +P+  TY  L  G   +   +E F+
Sbjct: 597 GRVFKKMGASGIEPDRYTYMSLINGHVTAGNSKEAFQ 633



 Score = 45.1 bits (105), Expect = 0.074,   Method: Compositional matrix adjust.
 Identities = 42/212 (19%), Positives = 86/212 (40%), Gaps = 30/212 (14%)

Query: 274 LAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMN 333
           + + ++ +  +  +A+ +  EM+          +N +I    + G +D A  L+  M+  
Sbjct: 162 IMVHSYCKSLEFDKADTVISEMEKRCVFPDVVTHNVLIDARFRAGDVDAAIALVDSMANK 221

Query: 334 GCKPNAITYRHLALGCFKS---NLVEEGFKAL-------------------------ELG 365
           G KP  +T+  +  G  K    +  +E F+A+                         E  
Sbjct: 222 GLKPGIVTFNSVLKGLCKHRRFDKAKEVFRAMDQCSVAPDVRSFNILIGGFCRVGEVEEA 281

Query: 366 MKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKA 425
           MK     + R  TP + +   +I +F+ +G + +A     E+K         +Y  +I  
Sbjct: 282 MKFYKEMQQRGVTPDVVSFSCLIGLFSTRGKMDHAAAYLREMKGLGLVPDGVIYTMVIGG 341

Query: 426 YVKA-KINDPNLLRRMILG-GARPDAETYSLL 455
           + +A  +++   +R  ++G G  PD  TY+ L
Sbjct: 342 FCRAGSMSEALRVRDEMVGLGCLPDVVTYNTL 373


>gi|326504724|dbj|BAK06653.1| predicted protein [Hordeum vulgare subsp. vulgare]
 gi|326523789|dbj|BAJ93065.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 419

 Score = 81.6 bits (200), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 76/330 (23%), Positives = 139/330 (42%), Gaps = 11/330 (3%)

Query: 13  AFQSWMREGFPVHRGEIFHSINRLRKLQLNKRALEVMEWVIRERPYRPKELDYSYLLEFT 72
           A + W  EG      E+      L + +  K ALEV EW+         E DY   ++  
Sbjct: 84  ALEKWAGEGRAAPAPELRRIARDLSRARRYKHALEVAEWMKTHHESDLSENDYGVRIDLI 143

Query: 73  IKNHGISQGEKLFCCIPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLV 132
            K  G +  E  F  +P   ++   Y  L+ +     +I  +    ++M+     I  LV
Sbjct: 144 TKVFGANAAEDFFEKLPPAAKSLEAYTALLHSYARSKMIDKAERLFQRMKDADLPIDVLV 203

Query: 133 FNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMK 192
           +N ++ L  S G    +P +  ++K   V+P + T+++ +       ++E    +  +M 
Sbjct: 204 YNEMMTLYISVGELDKVPILAEELKRQNVSPDLFTYNLRISASVASMDLEAFKGILDEMS 263

Query: 193 RSEVEPNE----VSYCILATAHAVA-RLYTVAETYVEALEKSMTGNNWSTLDVLIILYGY 247
           +   +PN     + Y  LA+ +  A +L +   + VEA E  ++   W T D+L+IL+  
Sbjct: 264 K---DPNSNEGWMLYRNLASIYVDASQLVSSGNSLVEA-EAKISQREWITYDLLVILHAG 319

Query: 248 LAKGKDLERIWATVQ-ELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLK-ATE 305
           L     ++ IW ++Q     + S++YV  + A+    Q+  A E+  + Q  K  +    
Sbjct: 320 LGNLDRVKDIWKSMQMTAQRMTSRNYVCVLSAYLMCGQLKDAAEVVDQWQRSKVPEFDVS 379

Query: 306 QYNSVISVYCKNGFIDKASGLLKEMSMNGC 335
             N +       GF D A    + M    C
Sbjct: 380 ACNRLFDALLAAGFTDTADSFRELMLQKSC 409


>gi|168033824|ref|XP_001769414.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162679334|gb|EDQ65783.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 410

 Score = 81.6 bits (200), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 79/352 (22%), Positives = 146/352 (41%), Gaps = 46/352 (13%)

Query: 108 KGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVST 167
           +G + L+ E  + M   G + S   +  L+   +  G  K    +   MK    +P+V T
Sbjct: 43  EGKLGLAREIFEGMSKAGVAPSVHAYTALLSGYAKQGLLKEAWALFEAMKEKGCSPNVLT 102

Query: 168 FHILMK-IEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEAL 226
           ++ L+       + +  L+ ++ +MK++ V+PN+++Y  +  A     L+  A   ++ +
Sbjct: 103 YNTLINACTKRAYRLPDLVGLFEEMKQAGVQPNDITYNCMVNACVCLSLFDTASQILKEM 162

Query: 227 EKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVS 286
           +                                 V  LPNV   SY   I + GR  ++ 
Sbjct: 163 K--------------------------------AVNCLPNV--ISYTTMINSLGRSGRLD 188

Query: 287 RAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLA 346
            A EL+ EM+ + +   +  YNS++  Y + G  +KA  L   M   GC P+  TY  + 
Sbjct: 189 EAVELFEEMKELGRSPNSWTYNSLLKAYAREGRYEKAMCLFVGMEDEGCIPDLYTYNTVI 248

Query: 347 LGCFKSNLVEEGFKA-LELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFE 405
             C +  L  E     LE+  K  T  +V  +T        +++ +++    G A +L +
Sbjct: 249 DMCGRGGLFAEAEGVFLEMQRKGCTPDRVTYNT--------MLDAYSKWSRRGRARDLLK 300

Query: 406 ELKKANYTKYTFVYNTLIKAYVKAKINDP--NLLRRMILGGARPDAETYSLL 455
            +K+A  T   + YN L+ A  KA        +   +   G  P+  ++S L
Sbjct: 301 TMKRAGCTPDLWTYNILLDAAGKAGSASEAMQIFHELKAAGHSPNLVSFSAL 352



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 75/336 (22%), Positives = 141/336 (41%), Gaps = 19/336 (5%)

Query: 98  YNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNIL---R 154
           Y  L+     +G++K +    + M+  G S + L +N LI  N+   R   +P+++    
Sbjct: 68  YTALLSGYAKQGLLKEAWALFEAMKEKGCSPNVLTYNTLI--NACTKRAYRLPDLVGLFE 125

Query: 155 QMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHA-VA 213
           +MK   V P+  T++ ++         +   ++  +MK     PN +SY  +  +     
Sbjct: 126 EMKQAGVQPNDITYNCMVNACVCLSLFDTASQILKEMKAVNCLPNVISYTTMINSLGRSG 185

Query: 214 RLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQE---LPNVRSK 270
           RL    E + E  E   + N+W T + L+  Y    + +    ++  +++   +P++ + 
Sbjct: 186 RLDEAVELFEEMKELGRSPNSW-TYNSLLKAYAREGRYEKAMCLFVGMEDEGCIPDLYT- 243

Query: 271 SYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEM 330
            Y   I+  GR    + AE ++LEMQ          YN+++  Y K     +A  LLK M
Sbjct: 244 -YNTVIDMCGRGGLFAEAEGVFLEMQRKGCTPDRVTYNTMLDAYSKWSRRGRARDLLKTM 302

Query: 331 SMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEI 390
              GC P+  TY  L     K+    E        M++    K    +P L +  ++I +
Sbjct: 303 KRAGCTPDLWTYNILLDAAGKAGSASE-------AMQIFHELKAAGHSPNLVSFSALINM 355

Query: 391 FAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAY 426
           +   G    AE  + E++          Y  L+ +Y
Sbjct: 356 YGRLGYFEEAERAWVEMRATGCVPNATAYCGLMNSY 391



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 50/255 (19%), Positives = 114/255 (44%), Gaps = 5/255 (1%)

Query: 94  NELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNIL 153
           N++ YN +V AC+   +   + + +K+M+ +    + + +  +I      GR      + 
Sbjct: 135 NDITYNCMVNACVCLSLFDTASQILKEMKAVNCLPNVISYTTMINSLGRSGRLDEAVELF 194

Query: 154 RQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVA 213
            +MK    +P+  T++ L+K  A +   E  M ++  M+     P+  +Y  +       
Sbjct: 195 EEMKELGRSPNSWTYNSLLKAYAREGRYEKAMCLFVGMEDEGCIPDLYTYNTVIDMCGRG 254

Query: 214 RLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAK---GKDLERIWATVQELPNVRSK 270
            L+  AE     +++     +  T + ++  Y   ++    +DL +        P++ + 
Sbjct: 255 GLFAEAEGVFLEMQRKGCTPDRVTYNTMLDAYSKWSRRGRARDLLKTMKRAGCTPDLWT- 313

Query: 271 SYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEM 330
            Y + ++A G+    S A +++ E+++         ++++I++Y + G+ ++A     EM
Sbjct: 314 -YNILLDAAGKAGSASEAMQIFHELKAAGHSPNLVSFSALINMYGRLGYFEEAERAWVEM 372

Query: 331 SMNGCKPNAITYRHL 345
              GC PNA  Y  L
Sbjct: 373 RATGCVPNATAYCGL 387



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 50/220 (22%), Positives = 89/220 (40%), Gaps = 35/220 (15%)

Query: 267 VRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGL 326
           ++  + V  I   GR  ++  A E++  M       +   Y +++S Y K G + +A  L
Sbjct: 28  LKEHNCVTIISILGREGKLGLAREIFEGMSKAGVAPSVHAYTALLSGYAKQGLLKEAWAL 87

Query: 327 LKEMSMNGCKPNAITYRHLALGCFKS--------NLVEEGFKA----------------- 361
            + M   GC PN +TY  L   C K          L EE  +A                 
Sbjct: 88  FEAMKEKGCSPNVLTYNTLINACTKRAYRLPDLVGLFEEMKQAGVQPNDITYNCMVNACV 147

Query: 362 ----LELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTF 417
                +   +++   K  +  P + +  ++I      G +  A  LFEE+K+   +  ++
Sbjct: 148 CLSLFDTASQILKEMKAVNCLPNVISYTTMINSLGRSGRLDEAVELFEEMKELGRSPNSW 207

Query: 418 VYNTLIKAYVKAKINDPNLLRRMILG----GARPDAETYS 453
            YN+L+KAY +    +  +   + +G    G  PD  TY+
Sbjct: 208 TYNSLLKAYAREGRYEKAMC--LFVGMEDEGCIPDLYTYN 245



 Score = 53.5 bits (127), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 44/236 (18%), Positives = 104/236 (44%), Gaps = 9/236 (3%)

Query: 87  CIPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRR 146
           C+P    N + Y  ++ +    G +  ++E  ++M+ LG S +   +N L+   +  GR 
Sbjct: 167 CLP----NVISYTTMINSLGRSGRLDEAVELFEEMKELGRSPNSWTYNSLLKAYAREGRY 222

Query: 147 KTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCIL 206
           +    +   M+ +   P + T++ ++ +            V+ +M+R    P+ V+Y  +
Sbjct: 223 EKAMCLFVGMEDEGCIPDLYTYNTVIDMCGRGGLFAEAEGVFLEMQRKGCTPDRVTYNTM 282

Query: 207 ATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQEL-- 264
             A++       A   ++ ++++    +  T ++L+   G      +  +I+  ++    
Sbjct: 283 LDAYSKWSRRGRARDLLKTMKRAGCTPDLWTYNILLDAAGKAGSASEAMQIFHELKAAGH 342

Query: 265 -PNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGF 319
            PN+ S S +  I  +GR+     AE  W+EM++   +     Y  +++ Y  +G 
Sbjct: 343 SPNLVSFSAL--INMYGRLGYFEEAERAWVEMRATGCVPNATAYCGLMNSYSHHGM 396


>gi|242061252|ref|XP_002451915.1| hypothetical protein SORBIDRAFT_04g009890 [Sorghum bicolor]
 gi|241931746|gb|EES04891.1| hypothetical protein SORBIDRAFT_04g009890 [Sorghum bicolor]
          Length = 571

 Score = 81.6 bits (200), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 81/366 (22%), Positives = 153/366 (41%), Gaps = 18/366 (4%)

Query: 98  YNNLVIACLDKGVIKLSLEYMKKMRVLGHSI-SYLVFNRLIILNSSPGRRKTIPNILRQM 156
           YN+++I  + +G  +   E   +M   GH     + ++ LI      GRR +   +L +M
Sbjct: 197 YNSMIIMLMHEGQYEKVHELYNEMSTEGHCFPDTMTYSALISAFCKLGRRDSAIQLLNEM 256

Query: 157 KADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLY 216
           K + + P    + +L+ +    +++ G + ++ +M+     P+  +Y  L     + +  
Sbjct: 257 KDNGMQPTTKIYTMLVALFFKLNDVHGALSLFEEMRHQYCRPDVFTYTEL--IRGLGKAG 314

Query: 217 TVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSKSYVLAI 276
            + E Y    E    G    T+ V+  +  +L K   L+      QE+  +R    V+  
Sbjct: 315 RIDEAYHFFYEMQREGCRPDTI-VMNNMINFLGKAGRLDDAMKLFQEMGTLRCIPSVVTY 373

Query: 277 EAFGR--IAQVSRAEEL--WLE-MQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMS 331
               +      SRA E+  W E M+      ++  Y+ +I  +CK   ++KA  LL+EM 
Sbjct: 374 NTIIKALFESKSRASEVPSWFERMKESGISPSSFTYSILIDGFCKTNRMEKAMMLLEEMD 433

Query: 332 MNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIF 391
             G  P    Y  L     K+       K  +L  +L    K    +        +I+  
Sbjct: 434 EKGFPPCPAAYCSLIDALGKA-------KRYDLACELFQELKENCGSSSSRVYAVMIKHL 486

Query: 392 AEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKINDPNL--LRRMILGGARPDA 449
            + G + +A N+F+E+ K       + YN L+    +  + D  L  +RRM   G  PD 
Sbjct: 487 GKAGRLDDAINMFDEMNKLGCAPDVYAYNALMSGLARTGMLDEALSTMRRMQEHGCIPDI 546

Query: 450 ETYSLL 455
            +Y+++
Sbjct: 547 NSYNII 552



 Score = 59.3 bits (142), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 58/297 (19%), Positives = 117/297 (39%), Gaps = 45/297 (15%)

Query: 53  IRERPYRPKELDYSYLLEFTIKNHGISQGEKLF------CCIPKDYQNELLYNNLVIACL 106
           +R +  RP    Y+ L+    K   I +    F       C P    + ++ NN++    
Sbjct: 291 MRHQYCRPDVFTYTELIRGLGKAGRIDEAYHFFYEMQREGCRP----DTIVMNNMINFLG 346

Query: 107 DKGVIKLSLEYMKKMRVLGHSISYLVFNRLI-ILNSSPGRRKTIPNILRQMKADKVAPHV 165
             G +  +++  ++M  L    S + +N +I  L  S  R   +P+   +MK   ++P  
Sbjct: 347 KAGRLDDAMKLFQEMGTLRCIPSVVTYNTIIKALFESKSRASEVPSWFERMKESGISPSS 406

Query: 166 STFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEA 225
            T+ IL+      + +E  M +  +M      P   +YC L  A   A+ Y +A    + 
Sbjct: 407 FTYSILIDGFCKTNRMEKAMMLLEEMDEKGFPPCPAAYCSLIDALGKAKRYDLACELFQE 466

Query: 226 LEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQV 285
           L+++   ++                                  S+ Y + I+  G+  ++
Sbjct: 467 LKENCGSSS----------------------------------SRVYAVMIKHLGKAGRL 492

Query: 286 SRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITY 342
             A  ++ EM  +        YN+++S   + G +D+A   ++ M  +GC P+  +Y
Sbjct: 493 DDAINMFDEMNKLGCAPDVYAYNALMSGLARTGMLDEALSTMRRMQEHGCIPDINSY 549


>gi|449438627|ref|XP_004137089.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g02860-like [Cucumis sativus]
          Length = 831

 Score = 81.3 bits (199), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 90/438 (20%), Positives = 191/438 (43%), Gaps = 27/438 (6%)

Query: 33  INRLRKLQLNKRALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQGEKLFCCIPKDY 92
           I+  R+  L + A EV E  ++   + P ++ Y+ LL+     +G S+  +    + K+ 
Sbjct: 298 ISSCRRGSLYEEAAEVFEE-MKAAGFSPDKVTYNALLDV----YGKSRRPREAMEVLKEM 352

Query: 93  QNE------LLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRR 146
           +        + YN+L+ A    G++  ++E   +M   G       +  L+      G+ 
Sbjct: 353 EASGFAPSIVTYNSLISAYARDGLLDEAMELKSQMVKKGIKPDVFTYTTLLSGFEKTGKD 412

Query: 147 KTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCIL 206
                +  +M+     P++ TF+ L+K+  N  N   +MKV+ ++K  E  P+ V++  L
Sbjct: 413 DYAMKVFEEMRVAGCQPNICTFNALIKMHGNRGNFVEMMKVFEEIKICECVPDIVTWNTL 472

Query: 207 ATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILY---GYLAKGKDLERIWATVQE 263
                   + +      + ++++       T + LI  Y   G+  +   + R       
Sbjct: 473 LAVFGQNGMDSEVSGVFKEMKRAGFVPERDTFNTLISAYSRCGFFDQAMAIYRRMLDAGV 532

Query: 264 LPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKA 323
            P++ + + VLA  A  R     ++E++  EM+  +       Y S++  Y     +++ 
Sbjct: 533 TPDLSTYNAVLA--ALARGGLWEQSEKVLAEMKDGRCKPNELTYCSLLHAYANGKEVERM 590

Query: 324 SGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKA-LELGMKLITTKKVRSSTPWLE 382
           S L +E+     +P A+  + L L   KS+L+ E  +A LEL        + +  +P + 
Sbjct: 591 SALAEEIYSGIIEPQAVLLKTLVLVYSKSDLLTETERAFLEL--------REQGFSPDIT 642

Query: 383 TTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKI--NDPNLLRRM 440
           T  +++ I+  +  V     +   +K + +T     YN+L+  Y + +      ++LR +
Sbjct: 643 TLNAMVSIYGRRRMVSKTNEILNFIKDSGFTPSLTTYNSLMYMYSRTEHFEKSEDILREI 702

Query: 441 ILGGARPDAETYSLLKLA 458
           I  G +PD  +++ +  A
Sbjct: 703 IAKGMKPDIISFNTVIFA 720



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 84/388 (21%), Positives = 153/388 (39%), Gaps = 72/388 (18%)

Query: 101 LVIACLDK-GVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKAD 159
           ++I+ L K G    +   +  +R  G  I    +  LI   +S GR +    + ++++ +
Sbjct: 190 VIISVLGKEGRASFAASLLHDLRNDGVHIDIYAYTSLITAYASNGRYREAVMVFKKLEEE 249

Query: 160 KVAPHVSTFHILMKIEAND----HNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARL 215
              P + T+++++ +          I GL+     MK S V P+  +Y  L ++     L
Sbjct: 250 GCRPTLITYNVILNVYGKMGMPWSKIAGLV---DSMKSSGVAPDLYTYNTLISSCRRGSL 306

Query: 216 YTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSKSYVLA 275
           Y  A    E ++                     A G   +++             +Y   
Sbjct: 307 YEEAAEVFEEMK---------------------AAGFSPDKV-------------TYNAL 332

Query: 276 IEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGC 335
           ++ +G+  +   A E+  EM++     +   YNS+IS Y ++G +D+A  L  +M   G 
Sbjct: 333 LDVYGKSRRPREAMEVLKEMEASGFAPSIVTYNSLISAYARDGLLDEAMELKSQMVKKGI 392

Query: 336 KPNAITYRHLALGCFKSNLVEEGFKALE----LG------------------------MK 367
           KP+  TY  L  G  K+   +   K  E     G                        MK
Sbjct: 393 KPDVFTYTTLLSGFEKTGKDDYAMKVFEEMRVAGCQPNICTFNALIKMHGNRGNFVEMMK 452

Query: 368 LITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYV 427
           +    K+    P + T  +++ +F + G       +F+E+K+A +      +NTLI AY 
Sbjct: 453 VFEEIKICECVPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPERDTFNTLISAYS 512

Query: 428 KAKINDPNL--LRRMILGGARPDAETYS 453
           +    D  +   RRM+  G  PD  TY+
Sbjct: 513 RCGFFDQAMAIYRRMLDAGVTPDLSTYN 540



 Score = 75.1 bits (183), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 80/378 (21%), Positives = 150/378 (39%), Gaps = 53/378 (14%)

Query: 83  KLFCCIPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSS 142
           K+  C+P    + + +N L+      G+        K+M+  G       FN LI   S 
Sbjct: 458 KICECVP----DIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPERDTFNTLISAYSR 513

Query: 143 PGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVS 202
            G       I R+M    V P +ST++ ++   A     E   KV ++MK    +PNE++
Sbjct: 514 CGFFDQAMAIYRRMLDAGVTPDLSTYNAVLAALARGGLWEQSEKVLAEMKDGRCKPNELT 573

Query: 203 YCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQ 262
           YC L  A+A  +         E +   +       L  L+++Y       + ER +  ++
Sbjct: 574 YCSLLHAYANGKEVERMSALAEEIYSGIIEPQAVLLKTLVLVYSKSDLLTETERAFLELR 633

Query: 263 EL---PNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGF 319
           E    P++ + + +++I  +GR   VS+  E+   ++      +   YNS++ +Y +   
Sbjct: 634 EQGFSPDITTLNAMVSI--YGRRRMVSKTNEILNFIKDSGFTPSLTTYNSLMYMYSRTEH 691

Query: 320 IDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTP 379
            +K+  +L+E+   G KP+ I++                                     
Sbjct: 692 FEKSEDILREIIAKGMKPDIISFN------------------------------------ 715

Query: 380 WLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAK--INDPNLL 437
                 ++I  +   G +  A  +F E+K          YNT I +Y      I   +++
Sbjct: 716 ------TVIFAYCRNGRMKEASRIFAEMKDFGLAPDVITYNTFIASYASDSMFIEAIDVV 769

Query: 438 RRMILGGARPDAETYSLL 455
           + MI  G +P+  TY+ L
Sbjct: 770 KYMIKNGCKPNQNTYNSL 787


>gi|226507918|ref|NP_001144813.1| uncharacterized protein LOC100277891 [Zea mays]
 gi|195647376|gb|ACG43156.1| hypothetical protein [Zea mays]
          Length = 597

 Score = 81.3 bits (199), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 69/305 (22%), Positives = 128/305 (41%), Gaps = 18/305 (5%)

Query: 160 KVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVA 219
           +  P   T+ +L++       +     V S+M+R+ + P    Y         AR    A
Sbjct: 202 RCVPTEDTYALLLRAYCGSGQLHRAEGVISEMQRNGIPPTATVYNAYLDGLLKARCSEKA 261

Query: 220 ETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQEL---PNVRSKSYVLAI 276
               + ++K     N  T  ++I +YG   +     R++  ++ +   PN+   +Y   +
Sbjct: 262 VEVYQRMKKERCRTNTZTYXLMINVYGKANQPMSSLRVFREMKSVGCKPNI--CTYTALV 319

Query: 277 EAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCK 336
            AF R     +AEE++ EMQ          YN+++  Y + G    AS +   M   GC+
Sbjct: 320 NAFAREGLCEKAEEVFEEMQQAGHEPDVYAYNALMEAYSRAGLPQGASEIFSLMEHMGCE 379

Query: 337 PNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGD 396
           P+  +Y  L     ++ L +E   A +         K +   P +++ + ++   A  G+
Sbjct: 380 PDRASYNILVDAFGRAGLHQEAEAAFQ-------ELKQQGMRPTMKSHMLLLSAHARSGN 432

Query: 397 VGNAENLFEELKKANYTKYTFVYNTLIKAYVKA-KIND-PNLLRRMILG----GARPDAE 450
           V   E +  +L K+     TF  N ++ AY +A +++D   L   M  G       PD  
Sbjct: 433 VARCEEVMAQLHKSGLRPDTFALNAMLNAYGRAGRLDDMERLFAAMERGDGASAGAPDTS 492

Query: 451 TYSLL 455
           TY++L
Sbjct: 493 TYNVL 497



 Score = 74.7 bits (182), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 85/442 (19%), Positives = 183/442 (41%), Gaps = 33/442 (7%)

Query: 33  INRLRKLQLNKR---ALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQGEKLFC--- 86
           +N   +L+LN++    + V EWV+R   +RP  + Y+ L++   +   +S+ E  +    
Sbjct: 140 VNVAVQLRLNRQWEPIITVCEWVLRRSSFRPDIICYNLLIDAYGQKRQLSEAEAAYMALL 199

Query: 87  ---CIPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLI--ILNS 141
              C+P     E  Y  L+ A    G +  +   + +M+  G   +  V+N  +  +L +
Sbjct: 200 EARCVP----TEDTYALLLRAYCGSGQLHRAEGVISEMQRNGIPPTATVYNAYLDGLLKA 255

Query: 142 SPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEV 201
               +     + ++MK ++   +  T+ +++ +    +     ++V+ +MK    +PN  
Sbjct: 256 RCSEKAV--EVYQRMKKERCRTNTZTYXLMINVYGKANQPMSSLRVFREMKSVGCKPNIC 313

Query: 202 SYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATV 261
           +Y  L  A A   L   AE   E ++++    +    + L+  Y      +    I++ +
Sbjct: 314 TYTALVNAFAREGLCEKAEEVFEEMQQAGHEPDVYAYNALMEAYSRAGLPQGASEIFSLM 373

Query: 262 QEL---PNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNG 318
           + +   P+    SY + ++AFGR      AE  + E++        + +  ++S + ++G
Sbjct: 374 EHMGCEPD--RASYNILVDAFGRAGLHQEAEAAFQELKQQGMRPTMKSHMLLLSAHARSG 431

Query: 319 FIDKASGLLKEMSMNGCKPNAITYRHL--ALG-CFKSNLVEEGFKALELGMKLITTKKVR 375
            + +   ++ ++  +G +P+      +  A G   + + +E  F A+E G          
Sbjct: 432 NVARCEEVMAQLHKSGLRPDTFALNAMLNAYGRAGRLDDMERLFAAMERG------DGAS 485

Query: 376 SSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKINDPN 435
           +  P   T   ++  +   G +   E  F  L           + + I AY + K     
Sbjct: 486 AGAPDTSTYNVLVNAYGRAGYLDRMEAAFRSLAARGLAADVVTWTSRIGAYARKKEYGQC 545

Query: 436 L--LRRMILGGARPDAETYSLL 455
           L     M+  G  PDA T  +L
Sbjct: 546 LRVFEEMVDAGCYPDAGTAKVL 567



 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 79/366 (21%), Positives = 149/366 (40%), Gaps = 19/366 (5%)

Query: 3   RLPRGEPVGSAFQSWMREGFPVHRGEIFHSINRLRKLQLNKRALEVMEWVIRERPYRPKE 62
           +L R E V S  Q   R G P         ++ L K + +++A+EV + + +ER  R   
Sbjct: 222 QLHRAEGVISEMQ---RNGIPPTATVYNAYLDGLLKARCSEKAVEVYQRMKKER-CRTNT 277

Query: 63  LDYSYLLEFTIKNHGISQGEKLF------CCIPKDYQNELLYNNLVIACLDKGVIKLSLE 116
             Y  ++    K +      ++F       C P    N   Y  LV A   +G+ + + E
Sbjct: 278 ZTYXLMINVYGKANQPMSSLRVFREMKSVGCKP----NICTYTALVNAFAREGLCEKAEE 333

Query: 117 YMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEA 176
             ++M+  GH      +N L+   S  G  +    I   M+     P  ++++IL+    
Sbjct: 334 VFEEMQQAGHEPDVYAYNALMEAYSRAGLPQGASEIFSLMEHMGCEPDRASYNILVDAFG 393

Query: 177 NDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWS 236
                +     + ++K+  + P   S+ +L +AHA +      E  +  L KS    +  
Sbjct: 394 RAGLHQEAEAAFQELKQQGMRPTMKSHMLLLSAHARSGNVARCEEVMAQLHKSGLRPDTF 453

Query: 237 TLDVLIILYGYLAKGKDLERIWATVQELPNVR-----SKSYVLAIEAFGRIAQVSRAEEL 291
            L+ ++  YG   +  D+ER++A ++           + +Y + + A+GR   + R E  
Sbjct: 454 ALNAMLNAYGRAGRLDDMERLFAAMERGDGASAGAPDTSTYNVLVNAYGRAGYLDRMEAA 513

Query: 292 WLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFK 351
           +  + +         + S I  Y +     +   + +EM   GC P+A T + L   C  
Sbjct: 514 FRSLAARGLAADVVTWTSRIGAYARKKEYGQCLRVFEEMVDAGCYPDAGTAKVLLAACSD 573

Query: 352 SNLVEE 357
              VE+
Sbjct: 574 ERQVEQ 579


>gi|18397002|ref|NP_566237.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75207286|sp|Q9SR00.1|PP213_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g04760, chloroplastic; Flags: Precursor
 gi|6175176|gb|AAF04902.1|AC011437_17 hypothetical protein [Arabidopsis thaliana]
 gi|15810359|gb|AAL07067.1| unknown protein [Arabidopsis thaliana]
 gi|22136960|gb|AAM91709.1| unknown protein [Arabidopsis thaliana]
 gi|332640611|gb|AEE74132.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 602

 Score = 81.3 bits (199), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 91/419 (21%), Positives = 184/419 (43%), Gaps = 18/419 (4%)

Query: 44  RALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQGEKLFCCI-PKDYQNELLYNNLV 102
           +A+ VME  I E+  +P    Y+ L+    K + I    ++   +  KD+  + +  N++
Sbjct: 142 KAVRVME--ILEKFGQPDVFAYNALINGFCKMNRIDDATRVLDRMRSKDFSPDTVTYNIM 199

Query: 103 IACL-DKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKV 161
           I  L  +G + L+L+ + ++       + + +  LI      G       ++ +M +  +
Sbjct: 200 IGSLCSRGKLDLALKVLNQLLSDNCQPTVITYTILIEATMLEGGVDEALKLMDEMLSRGL 259

Query: 162 APHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAET 221
            P + T++ +++    +  ++   ++  +++    EP+ +SY IL  A      +   E 
Sbjct: 260 KPDMFTYNTIIRGMCKEGMVDRAFEMVRNLELKGCEPDVISYNILLRALLNQGKWEEGEK 319

Query: 222 YVEALEKSMTGNNWSTLDVLIILY---GYLAKGKDLERIWATVQELPNVRSKSYVLAIEA 278
            +  +       N  T  +LI      G + +  +L ++       P+  + SY   I A
Sbjct: 320 LMTKMFSEKCDPNVVTYSILITTLCRDGKIEEAMNLLKLMKEKGLTPD--AYSYDPLIAA 377

Query: 279 FGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPN 338
           F R  ++  A E    M S   L     YN+V++  CKNG  D+A  +  ++   GC PN
Sbjct: 378 FCREGRLDVAIEFLETMISDGCLPDIVNYNTVLATLCKNGKADQALEIFGKLGEVGCSPN 437

Query: 339 AITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVG 398
           + +Y  +    + S    +  +AL + +++++        P   T  S+I     +G V 
Sbjct: 438 SSSYNTMFSALWSSG---DKIRALHMILEMMSN----GIDPDEITYNSMISCLCREGMVD 490

Query: 399 NAENLFEELKKANYTKYTFVYNTLIKAYVKA-KINDP-NLLRRMILGGARPDAETYSLL 455
            A  L  +++   +      YN ++  + KA +I D  N+L  M+  G RP+  TY++L
Sbjct: 491 EAFELLVDMRSCEFHPSVVTYNIVLLGFCKAHRIEDAINVLESMVGNGCRPNETTYTVL 549


>gi|449521772|ref|XP_004167903.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g61400-like [Cucumis sativus]
          Length = 645

 Score = 81.3 bits (199), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 82/344 (23%), Positives = 152/344 (44%), Gaps = 21/344 (6%)

Query: 98  YNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMK 157
           +  L+  C  +G +  + E   +MRV G   + +V+  LI    S  + +   ++ R M+
Sbjct: 185 FGTLIDGCCRQGDLLRAQEMFDEMRVKGIVPTVIVYTILIRGLCSDNKIEEAESMHRAMR 244

Query: 158 ADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHA-VARLY 216
              V P+V T++ LM       N +  +++Y DM    + P+ V++ IL         + 
Sbjct: 245 EVGVYPNVYTYNTLMDGYCKLANAKQALRLYQDMLGEGLVPDVVTFGILIDGLCKFGEMK 304

Query: 217 TVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQEL------PNVRSK 270
                +V  ++ S+T  N +  + LI  Y    K  D+    A   EL      P+V + 
Sbjct: 305 AARNLFVNMIKFSVT-PNIAVYNSLIDAY---CKVGDVSEAMALFLELERFEVSPDVFT- 359

Query: 271 SYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEM 330
            Y + I     +++   A  ++ +M     L  +  YNS+I   CK G +DKA  +  +M
Sbjct: 360 -YSILIRGLCSVSRTEEAGNIFEKMTKEGILANSVTYNSLIDGCCKEGKMDKALEICSQM 418

Query: 331 SMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEI 390
           + NG +PN IT+  L  G  K        + L+  M + +   ++S +P + T  ++I+ 
Sbjct: 419 TENGVEPNVITFSTLIDGYCK-------IRNLQAAMGIYSEMVIKSLSPDVVTYTAMIDG 471

Query: 391 FAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVK-AKIND 433
             + G +  A  L+ ++     T   +  + L+    K  KI+D
Sbjct: 472 HCKYGSMKEALKLYSDMLDNGITPNCYTISCLLDGLCKDGKISD 515



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 96/440 (21%), Positives = 177/440 (40%), Gaps = 34/440 (7%)

Query: 44  RALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQGEKLFCCIPKD--YQNELLYNNL 101
           RA E+ +  +R +   P  + Y+ L+     ++ I + E +   + +   Y N   YN L
Sbjct: 200 RAQEMFDE-MRVKGIVPTVIVYTILIRGLCSDNKIEEAESMHRAMREVGVYPNVYTYNTL 258

Query: 102 VIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKV 161
           +         K +L   + M   G     + F  LI      G  K   N+   M    V
Sbjct: 259 MDGYCKLANAKQALRLYQDMLGEGLVPDVVTFGILIDGLCKFGEMKAARNLFVNMIKFSV 318

Query: 162 APHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAET 221
            P+++ ++ L+       ++   M ++ +++R EV P+  +Y IL            A  
Sbjct: 319 TPNIAVYNSLIDAYCKVGDVSEAMALFLELERFEVSPDVFTYSILIRGLCSVSRTEEAGN 378

Query: 222 YVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQEL------PNVRSKSYVLA 275
             E + K     N  T + LI   G   +GK +++      ++      PNV + S +  
Sbjct: 379 IFEKMTKEGILANSVTYNSLI--DGCCKEGK-MDKALEICSQMTENGVEPNVITFSTL-- 433

Query: 276 IEAFGRIAQVSRAEELWLEMQSVKQLKA-TEQYNSVISVYCKNGFIDKASGLLKEMSMNG 334
           I+ + +I  +  A  ++ EM  +K L      Y ++I  +CK G + +A  L  +M  NG
Sbjct: 434 IDGYCKIRNLQAAMGIYSEM-VIKSLSPDVVTYTAMIDGHCKYGSMKEALKLYSDMLDNG 492

Query: 335 CKPNAITYRHLALGCFKSNLVEEG--FKALELGMKLITTKKVR------SSTPWLETTL- 385
             PN  T     + C    L ++G    ALEL  + I  +  R       S P L   + 
Sbjct: 493 ITPNCYT-----ISCLLDGLCKDGKISDALELFTEKIEFQTPRCNVDAGGSKPSLTNHVA 547

Query: 386 --SIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKINDPNLLRRMILG 443
             ++I    + G    A  LF ++++        +Y  +++   + K     L   M+  
Sbjct: 548 YTALIHGLCQDGQFSKAVKLFSDMRRYGLQPDEVIYVVMLRGLFQVKYILMMLHADMLKF 607

Query: 444 GARPDAETYSLLKLAEQFQK 463
           G  P++  + +  L E +Q+
Sbjct: 608 GVIPNSAVHVI--LCECYQE 625



 Score = 38.9 bits (89), Expect = 5.8,   Method: Compositional matrix adjust.
 Identities = 36/151 (23%), Positives = 62/151 (41%), Gaps = 11/151 (7%)

Query: 308 NSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMK 367
           N ++ V  K G  +    + +EM  NG  P+ IT+  L  GC +     +  +A E    
Sbjct: 151 NVLLYVLVKTGRFELLWRIYEEMISNGLSPSVITFGTLIDGCCRQG---DLLRAQE---- 203

Query: 368 LITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYV 427
           +    +V+   P +     +I        +  AE++   +++       + YNTL+  Y 
Sbjct: 204 MFDEMRVKGIVPTVIVYTILIRGLCSDNKIEEAESMHRAMREVGVYPNVYTYNTLMDGYC 263

Query: 428 KAKINDPNLLR---RMILGGARPDAETYSLL 455
           K   N    LR    M+  G  PD  T+ +L
Sbjct: 264 KLA-NAKQALRLYQDMLGEGLVPDVVTFGIL 293


>gi|326533642|dbj|BAK05352.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 860

 Score = 81.3 bits (199), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 74/326 (22%), Positives = 149/326 (45%), Gaps = 13/326 (3%)

Query: 44  RALEVMEWVIRERPY---RPKELDYSYLLEFTIKNHGISQGEKLFCCIPKD--YQNELLY 98
           RA++  E V+R+      +P  + YS ++        + +  K+F  + K     N +  
Sbjct: 314 RAMDKAELVLRQMTTDGAQPDTVTYSCMIHGYATLGRLKEAAKMFREMKKRGLIPNIVTC 373

Query: 99  NNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKA 158
           N+ + +    G  K + E+   M   GH      +  L+   +S G    +  +   MK+
Sbjct: 374 NSFLASLCKHGRSKEAAEFFDSMTAKGHKPDIFSYCTLLHGYASEGCFADMIGLFNSMKS 433

Query: 159 DKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSY-CILATAHAVARLYT 217
           + +A +   F IL+   A    ++  M ++++M++  V P+ V+Y  +++T   + RL  
Sbjct: 434 NGIAANCHVFTILIHAYAKRGMVDDAMLIFTEMQQQGVSPDVVTYSTVISTFSRMGRLTD 493

Query: 218 VAETYVEALEKSMTGNN--WSTLDVLIILYGYLAKGKDL--ERIWATVQELPNVRSKSYV 273
             E + + + + +  N   +S++     ++G L K K+L  E I   +   P++   S V
Sbjct: 494 AMEKFNQMVARGIQPNTAVYSSIIQGFCMHGGLVKAKELVSEMINKGIPR-PDIVFFSSV 552

Query: 274 LAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMN 333
             I +  +  +V  A +++     + +      +NS+I  YC  G +DKA  +L  M + 
Sbjct: 553 --INSLCKDGRVMDAHDIFDLATDIGERPGVITFNSLIDGYCLVGKMDKAFKILDAMEVV 610

Query: 334 GCKPNAITYRHLALGCFKSNLVEEGF 359
           G +P+ +TY  L  G FK+  + +G 
Sbjct: 611 GVEPDIVTYNTLLDGYFKNGRINDGL 636



 Score = 76.3 bits (186), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 93/438 (21%), Positives = 184/438 (42%), Gaps = 31/438 (7%)

Query: 40  QLNKRALEVMEWVIRER-PYRPKELDYSYLLEFTIKNHGI-SQGEKLFCC------IPKD 91
            +++RAL++++ + ++     P  + YS ++      HG  ++GE    C        + 
Sbjct: 242 SMSQRALDLLQMMAKQGGACSPDVVAYSTVI------HGFFNEGETGKACSLFHEMTRQG 295

Query: 92  YQNELLYNNLVIACLDKGVIKLSLE-YMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIP 150
            + +++  NL+I  L K       E  +++M   G     + ++ +I   ++ GR K   
Sbjct: 296 VKPDVVTYNLIIDALCKARAMDKAELVLRQMTTDGAQPDTVTYSCMIHGYATLGRLKEAA 355

Query: 151 NILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAH 210
            + R+MK   + P++ T +  +         +   + +  M     +P+  SYC L   +
Sbjct: 356 KMFREMKKRGLIPNIVTCNSFLASLCKHGRSKEAAEFFDSMTAKGHKPDIFSYCTLLHGY 415

Query: 211 AVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQEL---PNV 267
           A    +        +++ +    N     +LI  Y       D   I+  +Q+    P+V
Sbjct: 416 ASEGCFADMIGLFNSMKSNGIAANCHVFTILIHAYAKRGMVDDAMLIFTEMQQQGVSPDV 475

Query: 268 RSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLL 327
            + S V  I  F R+ +++ A E + +M +      T  Y+S+I  +C +G + KA  L+
Sbjct: 476 VTYSTV--ISTFSRMGRLTDAMEKFNQMVARGIQPNTAVYSSIIQGFCMHGGLVKAKELV 533

Query: 328 KEMSMNGC-KPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLS 386
            EM   G  +P+ + +  +     K   V +     +L   +          P + T  S
Sbjct: 534 SEMINKGIPRPDIVFFSSVINSLCKDGRVMDAHDIFDLATDI-------GERPGVITFNS 586

Query: 387 IIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVK-AKINDP-NLLRRMILGG 444
           +I+ +   G +  A  + + ++          YNTL+  Y K  +IND   L R M   G
Sbjct: 587 LIDGYCLVGKMDKAFKILDAMEVVGVEPDIVTYNTLLDGYFKNGRINDGLTLFREMQRKG 646

Query: 445 ARPDAETYSLLKLAEQFQ 462
            +P+  TY ++ LA  F+
Sbjct: 647 VKPNTVTYGIM-LAGLFR 663



 Score = 60.8 bits (146), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 42/132 (31%), Positives = 70/132 (53%), Gaps = 7/132 (5%)

Query: 326 LLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTL 385
           LL  MS  GC PNA++Y  + L     N + +  +AL+L ++++  K+  + +P +    
Sbjct: 215 LLHRMSELGCVPNAVSY-SIVLKALCDNSMSQ--RALDL-LQMMA-KQGGACSPDVVAYS 269

Query: 386 SIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKINDPN--LLRRMILG 443
           ++I  F  +G+ G A +LF E+ +         YN +I A  KA+  D    +LR+M   
Sbjct: 270 TVIHGFFNEGETGKACSLFHEMTRQGVKPDVVTYNLIIDALCKARAMDKAELVLRQMTTD 329

Query: 444 GARPDAETYSLL 455
           GA+PD  TYS +
Sbjct: 330 GAQPDTVTYSCM 341


>gi|357487731|ref|XP_003614153.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355515488|gb|AES97111.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 691

 Score = 81.3 bits (199), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 96/384 (25%), Positives = 168/384 (43%), Gaps = 28/384 (7%)

Query: 84  LFCCIP--KDYQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNS 141
           LF  +P  K+++N  +YN  +   L  G  K + +  + M   G    ++  + +II   
Sbjct: 235 LFRNLPSSKEFRNVRVYNAAISGLLYDGRYKDAWKVYESMETDGVLPDHVTCSIMIIGMR 294

Query: 142 SPGRR-KTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMK----VYSDMKRSEV 196
             G   K       +M    V      F  L+K       +EGL+     + S+M++  +
Sbjct: 295 KLGHSAKDAWQFFEKMNQKGVRWGKEAFGALIK----SFCVEGLLSEALIIQSEMEKKGI 350

Query: 197 EPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLER 256
             N + Y  L  A+  +     AE     ++         T ++L+  Y    + K +E 
Sbjct: 351 SSNAIVYNTLMDAYCKSNRVEEAEGLFVEMKAKGIKPTAVTFNILMYAYSRRMQPKIVES 410

Query: 257 IWATVQEL---PNVRSKSYVLAIEAFGRIAQVSR-AEELWLEMQSVKQLKATEQYNSVIS 312
           + A +++    PN  + SY   I A+GR  ++S  A + +L+M+ V     +  Y ++I 
Sbjct: 411 LLAEMKDFGLKPN--ANSYTCLISAYGRQKKMSDMAADAFLKMKKVGIKPTSHSYTAMIH 468

Query: 313 VYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTK 372
            Y  +G+ +KA  + + M   G KP+  TY  L L  F+     E    +    KL+ ++
Sbjct: 469 AYSVSGWHEKAYAVFENMIREGIKPSIETYTTL-LDAFRRVGDTETLMKI---WKLMMSE 524

Query: 373 KVRSSTPWLETTLSI-IEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKI 431
           KV+ +    + T +I ++ FA++G    A ++  E  K         YN LI AY +  +
Sbjct: 525 KVKGT----QVTFNILVDGFAKQGLFMEARDVISEFGKIGLQPTVMTYNMLINAYARGGL 580

Query: 432 --NDPNLLRRMILGGARPDAETYS 453
             N P LL+ M     RPD+ TYS
Sbjct: 581 DSNIPQLLKEMEALRLRPDSITYS 604



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 81/381 (21%), Positives = 158/381 (41%), Gaps = 45/381 (11%)

Query: 77  GISQGEKLFCCIPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRL 136
           G+  G++ F  + K +            C++ G++  +L    +M   G S + +V+N L
Sbjct: 314 GVRWGKEAFGALIKSF------------CVE-GLLSEALIIQSEMEKKGISSNAIVYNTL 360

Query: 137 IILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEV 196
           +       R +    +  +MKA  + P   TF+ILM   +     + +  + ++MK   +
Sbjct: 361 MDAYCKSNRVEEAEGLFVEMKAKGIKPTAVTFNILMYAYSRRMQPKIVESLLAEMKDFGL 420

Query: 197 EPNEVSYCILATAHAVARLYTVAETYVEA-LEKSMTGNNWSTLDVLIILYGYLAKGKDLE 255
           +PN  SY  L +A+   R   +++   +A L+    G   ++     +++ Y   G   E
Sbjct: 421 KPNANSYTCLISAY--GRQKKMSDMAADAFLKMKKVGIKPTSHSYTAMIHAYSVSGWH-E 477

Query: 256 RIWATVQEL------PNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNS 309
           + +A  + +      P++  ++Y   ++AF R+       ++W  M S K       +N 
Sbjct: 478 KAYAVFENMIREGIKPSI--ETYTTLLDAFRRVGDTETLMKIWKLMMSEKVKGTQVTFNI 535

Query: 310 VISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHL----ALGCFKSNLVE--EGFKALE 363
           ++  + K G   +A  ++ E    G +P  +TY  L    A G   SN+ +  +  +AL 
Sbjct: 536 LVDGFAKQGLFMEARDVISEFGKIGLQPTVMTYNMLINAYARGGLDSNIPQLLKEMEALR 595

Query: 364 LGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLI 423
           L    IT               ++I  F    D   A    +E+ K+ Y      Y  L 
Sbjct: 596 LRPDSITYS-------------TVIYAFVRVRDFKRAFFYHKEMVKSGYVMDISSYRKL- 641

Query: 424 KAYVKAKINDPNLLRRMILGG 444
           +A +  K+ D N   ++ + G
Sbjct: 642 RAILDVKVADKNKSDKVAMYG 662



 Score = 51.6 bits (122), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 72/315 (22%), Positives = 127/315 (40%), Gaps = 28/315 (8%)

Query: 153 LRQMKADKVAPHVST--FHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAH 210
           +R  +   V P V T  F +L +    D     LM ++ ++  S+   N   Y    +  
Sbjct: 203 MRSQEPSLVTPKVYTTLFPLLGRARMGDK----LMVLFRNLPSSKEFRNVRVYNAAISGL 258

Query: 211 AVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSK 270
                Y  A    E++E      +  T  ++II  G    G   +  W   Q    +  K
Sbjct: 259 LYDGRYKDAWKVYESMETDGVLPDHVTCSIMII--GMRKLGHSAKDAW---QFFEKMNQK 313

Query: 271 SYVLAIEAFGRIAQVSRAEELWLE---MQSVKQLKATEQ----YNSVISVYCKNGFIDKA 323
                 EAFG + +    E L  E   +QS  + K        YN+++  YCK+  +++A
Sbjct: 314 GVRWGKEAFGALIKSFCVEGLLSEALIIQSEMEKKGISSNAIVYNTLMDAYCKSNRVEEA 373

Query: 324 SGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLET 383
            GL  EM   G KP A+T+ ++ +  +   +  +  ++L   MK    K      P   +
Sbjct: 374 EGLFVEMKAKGIKPTAVTF-NILMYAYSRRMQPKIVESLLAEMKDFGLK------PNANS 426

Query: 384 TLSIIEIFAEKGDVGN-AENLFEELKKANYTKYTFVYNTLIKAYVKAKINDP--NLLRRM 440
              +I  +  +  + + A + F ++KK      +  Y  +I AY  +  ++    +   M
Sbjct: 427 YTCLISAYGRQKKMSDMAADAFLKMKKVGIKPTSHSYTAMIHAYSVSGWHEKAYAVFENM 486

Query: 441 ILGGARPDAETYSLL 455
           I  G +P  ETY+ L
Sbjct: 487 IREGIKPSIETYTTL 501



 Score = 48.1 bits (113), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 51/205 (24%), Positives = 89/205 (43%), Gaps = 12/205 (5%)

Query: 258 WATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKN 317
           W   QE   V  K Y       GR     +   L+  + S K+ +    YN+ IS    +
Sbjct: 202 WMRSQEPSLVTPKVYTTLFPLLGRARMGDKLMVLFRNLPSSKEFRNVRVYNAAISGLLYD 261

Query: 318 GFIDKASGLLKEMSMNGCKPNAITYRHLALGCFK-SNLVEEGFKALELGMKLITTKKVRS 376
           G    A  + + M  +G  P+ +T   + +G  K  +  ++ ++  E     +  K VR 
Sbjct: 262 GRYKDAWKVYESMETDGVLPDHVTCSIMIIGMRKLGHSAKDAWQFFE----KMNQKGVR- 316

Query: 377 STPW-LETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKA-KINDP 434
              W  E   ++I+ F  +G +  A  +  E++K   +    VYNTL+ AY K+ ++ + 
Sbjct: 317 ---WGKEAFGALIKSFCVEGLLSEALIIQSEMEKKGISSNAIVYNTLMDAYCKSNRVEEA 373

Query: 435 -NLLRRMILGGARPDAETYSLLKLA 458
             L   M   G +P A T+++L  A
Sbjct: 374 EGLFVEMKAKGIKPTAVTFNILMYA 398


>gi|357517409|ref|XP_003628993.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355523015|gb|AET03469.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 819

 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 71/274 (25%), Positives = 120/274 (43%), Gaps = 19/274 (6%)

Query: 98  YNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMK 157
           YN L+  C   G I+ + +  +KM   G       +N L+   +  G+   +  +L + K
Sbjct: 525 YNTLIFGCCKSGKIEEAFKLKEKMMKQGFKPDTYTYNFLMKGLADKGKMDDVGRVLHEAK 584

Query: 158 ADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYT 217
              V P++ T+ ++++   N   I+  + +++ +  ++VE + V Y IL  AH+ A  +T
Sbjct: 585 DHGVVPNIYTYALMLEGYCNADRIDNAVSLFNKLVYNKVELSYVVYNILIAAHSKAGNFT 644

Query: 218 VAETYVEALEKSMTGNNWSTLDVLIILYGYLAKG---KDL-ERIWATVQE------LPNV 267
            A    +A+         S +   I  Y  +  G    DL E      +E      +PNV
Sbjct: 645 EAFKLRDAMRS-------SNIHPTIFTYSSIIHGMCCNDLVEEAKGIFEEMRNEGLMPNV 697

Query: 268 RSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLL 327
               Y   I  + ++ Q+ + E +  EM S         Y  +I  YCK G   +A+ LL
Sbjct: 698 F--CYTALIGGYCKLGQMDQIESILQEMTSNCIQPNKITYTIMIDGYCKMGNTKEATKLL 755

Query: 328 KEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKA 361
            EM  NG  P+ +TY  L  G  K N +EE  + 
Sbjct: 756 NEMIANGISPDTVTYTVLQKGYCKENELEETLQG 789



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 77/343 (22%), Positives = 145/343 (42%), Gaps = 19/343 (5%)

Query: 94  NELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRK--TIPN 151
           N + YNNL+      G ++ +L  M K R++ + ++  +    I++N      K     +
Sbjct: 275 NVVTYNNLIDGLCKSGRLEEAL--MFKGRMVENKVNPSLVTYGILVNGLVKFEKFDEANS 332

Query: 152 ILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHA 211
           +L +M +   +P+   F+ L+   +   N++  ++V  DM    ++PN V++  L     
Sbjct: 333 VLVEMYSKGFSPNEFVFNALIDGYSRKGNMDDALRVRDDMTLKGLKPNAVTHNTLLQGFC 392

Query: 212 VARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQEL--PNVRS 269
                  AE  +E L  ++   N      ++ L   L K    +     V+ L   N++ 
Sbjct: 393 RTNQMEQAEQVLEYLLSNVLSVNEDACSYVLHL---LCKSSKFDSALKIVKALLLRNIKV 449

Query: 270 KSYVLAIEAFG--RIAQVSRAEELWLEMQSVKQLKA-TEQYNSVISVYCKNGFIDKASGL 326
              +L +   G  +  +   A +LW  +   K L A T   N+++   C+ G +++   +
Sbjct: 450 NDSLLTLLVCGLCKCGKHLEAIDLWFRLADKKGLAANTTTSNALLYGLCERGNMEEVFPV 509

Query: 327 LKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLS 386
            KEM   G   + I+Y  L  GC KS  +EE FK  E  MK       +   P   T   
Sbjct: 510 CKEMVERGLVLDGISYNTLIFGCCKSGKIEEAFKLKEKMMK-------QGFKPDTYTYNF 562

Query: 387 IIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKA 429
           +++  A+KG + +   +  E K        + Y  +++ Y  A
Sbjct: 563 LMKGLADKGKMDDVGRVLHEAKDHGVVPNIYTYALMLEGYCNA 605



 Score = 65.5 bits (158), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 66/253 (26%), Positives = 115/253 (45%), Gaps = 26/253 (10%)

Query: 213 ARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWA--------TVQEL 264
           ARL  +A  ++E  E+S        LD+LI  Y   ++ + L   WA        +    
Sbjct: 151 ARLSEIASAFLELGERS-----HGELDLLI--YILCSQFQHLGFHWAFDTFMLFTSKGVF 203

Query: 265 PNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKAS 324
           P+++S +++++  +  +  ++ ++  ++  M     L     Y + I+ YCK G ID+A 
Sbjct: 204 PSLKSCNFLMS--SLVKSNELHKSFRVFDAMCRGGVLIDVYTYATAINAYCKGGKIDEAV 261

Query: 325 GLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETT 384
           GL  +M   G  PN +TY +L  G  KS  +EE   AL    +++  K      P L T 
Sbjct: 262 GLFLKMGEGGVLPNVVTYNNLIDGLCKSGRLEE---ALMFKGRMVENK----VNPSLVTY 314

Query: 385 LSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKINDPNLLRR--MIL 442
             ++    +      A ++  E+    ++   FV+N LI  Y +    D  L  R  M L
Sbjct: 315 GILVNGLVKFEKFDEANSVLVEMYSKGFSPNEFVFNALIDGYSRKGNMDDALRVRDDMTL 374

Query: 443 GGARPDAETYSLL 455
            G +P+A T++ L
Sbjct: 375 KGLKPNAVTHNTL 387



 Score = 48.1 bits (113), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 71/365 (19%), Positives = 122/365 (33%), Gaps = 78/365 (21%)

Query: 94  NELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNIL 153
           N    N L+    ++G ++      K+M   G  +  + +N LI      G+ +    + 
Sbjct: 486 NTTTSNALLYGLCERGNMEEVFPVCKEMVERGLVLDGISYNTLIFGCCKSGKIEEAFKLK 545

Query: 154 RQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVA 213
            +M      P   T++ LMK  A+   ++ + +V  + K   V PN  +Y ++   +   
Sbjct: 546 EKMMKQGFKPDTYTYNFLMKGLADKGKMDDVGRVLHEAKDHGVVPNIYTYALMLEGYC-- 603

Query: 214 RLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSKSYV 273
                               N   +D  + L+  L   K          EL  V    Y 
Sbjct: 604 --------------------NADRIDNAVSLFNKLVYNK---------VELSYV---VYN 631

Query: 274 LAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMN 333
           + I A  +    + A +L   M+S         Y+S+I   C N  +++A G+ +EM   
Sbjct: 632 ILIAAHSKAGNFTEAFKLRDAMRSSNIHPTIFTYSSIIHGMCCNDLVEEAKGIFEEMRNE 691

Query: 334 GCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAE 393
           G  PN   Y  L  G                                          + +
Sbjct: 692 GLMPNVFCYTALIGG------------------------------------------YCK 709

Query: 394 KGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKIND--PNLLRRMILGGARPDAET 451
            G +   E++ +E+           Y  +I  Y K         LL  MI  G  PD  T
Sbjct: 710 LGQMDQIESILQEMTSNCIQPNKITYTIMIDGYCKMGNTKEATKLLNEMIANGISPDTVT 769

Query: 452 YSLLK 456
           Y++L+
Sbjct: 770 YTVLQ 774



 Score = 47.8 bits (112), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 76/319 (23%), Positives = 138/319 (43%), Gaps = 17/319 (5%)

Query: 144 GRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSY 203
           G+      +  +M    V P+V T++ L+        +E  +     M  ++V P+ V+Y
Sbjct: 255 GKIDEAVGLFLKMGEGGVLPNVVTYNNLIDGLCKSGRLEEALMFKGRMVENKVNPSLVTY 314

Query: 204 CILATAHAVARLYTVAET-YVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIW--AT 260
            IL         +  A +  VE   K  + N +   + LI  Y       D  R+    T
Sbjct: 315 GILVNGLVKFEKFDEANSVLVEMYSKGFSPNEF-VFNALIDGYSRKGNMDDALRVRDDMT 373

Query: 261 VQEL-PNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNS-VISVYCKNG 318
           ++ L PN  + + +L  + F R  Q+ +AE++ LE      L   E   S V+ + CK+ 
Sbjct: 374 LKGLKPNAVTHNTLL--QGFCRTNQMEQAEQV-LEYLLSNVLSVNEDACSYVLHLLCKSS 430

Query: 319 FIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSST 378
             D A  ++K + +   K N      L  G  K     +  +A++L  +L   K + ++T
Sbjct: 431 KFDSALKIVKALLLRNIKVNDSLLTLLVCGLCKCG---KHLEAIDLWFRLADKKGLAANT 487

Query: 379 PWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKA-KINDPNLL 437
               T+ +++    E+G++     + +E+ +         YNTLI    K+ KI +   L
Sbjct: 488 T---TSNALLYGLCERGNMEEVFPVCKEMVERGLVLDGISYNTLIFGCCKSGKIEEAFKL 544

Query: 438 R-RMILGGARPDAETYSLL 455
           + +M+  G +PD  TY+ L
Sbjct: 545 KEKMMKQGFKPDTYTYNFL 563



 Score = 43.1 bits (100), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 33/159 (20%), Positives = 71/159 (44%), Gaps = 7/159 (4%)

Query: 271 SYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEM 330
           +Y  AI A+ +  ++  A  L+L+M     L     YN++I   CK+G +++A      M
Sbjct: 243 TYATAINAYCKGGKIDEAVGLFLKMGEGGVLPNVVTYNNLIDGLCKSGRLEEALMFKGRM 302

Query: 331 SMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEI 390
             N   P+ +TY  L  G  K       F+  +    ++     +  +P      ++I+ 
Sbjct: 303 VENKVNPSLVTYGILVNGLVK-------FEKFDEANSVLVEMYSKGFSPNEFVFNALIDG 355

Query: 391 FAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKA 429
           ++ KG++ +A  + +++           +NTL++ + + 
Sbjct: 356 YSRKGNMDDALRVRDDMTLKGLKPNAVTHNTLLQGFCRT 394


>gi|297806221|ref|XP_002870994.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297316831|gb|EFH47253.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 819

 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 75/363 (20%), Positives = 156/363 (42%), Gaps = 18/363 (4%)

Query: 98  YNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMK 157
           YN+L+ A    G++  ++E   +M   G       +  L+      G+ ++  NI  +M+
Sbjct: 352 YNSLISAYARDGMLDEAMELKNQMAEKGTKPDVFTYTTLLSGFERAGKVESAMNIFEEMR 411

Query: 158 ADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYT 217
                P++ TF+  +K+  N      +MK++ ++    + P+ V++  L        + +
Sbjct: 412 NAGCKPNICTFNAFIKMYGNRGKFVDMMKIFDEINVCGLSPDIVTWNTLLAVFGQNGMDS 471

Query: 218 VAETYVEALEKSMTGNNWSTLDVLIILY---GYLAKGKDLERIWATVQELPNVRSKSYVL 274
                 + ++++       T + LI  Y   G   +   + R        P++ + + VL
Sbjct: 472 EVSGVFKEMKRAGFVPERETFNTLISAYSRCGSFEQAMTVYRRMLDAGVTPDLSTYNTVL 531

Query: 275 AIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNG 334
           A  A  R     ++E++  EM+  +       Y S++  Y     I     L +E+    
Sbjct: 532 A--ALARGGMWEQSEKVLAEMEDGRCKPNELTYCSLLHAYANGKEIGLMHSLAEEVYSGV 589

Query: 335 CKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEK 394
            +P A+  + L L C K +L+ E  +A        +  K R  +P + T  S++ I+  +
Sbjct: 590 IEPRAVLLKTLVLVCSKCDLLPEAERAF-------SELKERGFSPDITTLNSMVSIYGRR 642

Query: 395 GDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKIND----PNLLRRMILGGARPDAE 450
             VG A  + + +K+  +T     YN+L+  Y+ ++  D      +LR ++  G +PD  
Sbjct: 643 QMVGKANEVLDYMKERGFTPSMATYNSLM--YMHSRSADFGKSEEILREILAKGIKPDII 700

Query: 451 TYS 453
           +Y+
Sbjct: 701 SYN 703



 Score = 79.3 bits (194), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 97/445 (21%), Positives = 176/445 (39%), Gaps = 80/445 (17%)

Query: 57  PYRPK-ELDYSYLLEFTIKNHGISQGEKLFCCI------PKDYQNELLYNNLVIACL--- 106
           P++ K E   S LL F +K  G  +   L  C        KDYQ+ L  +N VIA +   
Sbjct: 126 PFKDKPESTSSELLAF-LKGLGFHKKFDLALCAFDWFMKQKDYQSML--DNSVIAIVISM 182

Query: 107 --DKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPH 164
              +G +  +      ++  G S+    +  LI   ++ GR +   N+ ++M+ +   P 
Sbjct: 183 LGKEGRVSSAANLFNGLQEDGFSLDVYSYTSLISAFANSGRYREAVNVFKKMEEEGCKPT 242

Query: 165 VSTFHILMKIEAN-DHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYV 223
           + T+++++ +          +  +   MK   + P+  +Y  L T      L+  A    
Sbjct: 243 LITYNVILNVFGKMGTPWNKITSLVEKMKSDGIAPDAYTYNTLITCCKRGSLHQEAAQVF 302

Query: 224 EALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIA 283
           E ++ +   ++  T + L+ +YG   + K+  ++   ++   N  S S V          
Sbjct: 303 EEMKAAGFSHDKVTYNALLDVYGKSHRPKEAMKVLNEMEL--NGFSPSIV---------- 350

Query: 284 QVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYR 343
                                  YNS+IS Y ++G +D+A  L  +M+  G KP+  TY 
Sbjct: 351 ----------------------TYNSLISAYARDGMLDEAMELKNQMAEKGTKPDVFTYT 388

Query: 344 HLALGCFKSNLVEEGFKALE----LG------------------------MKLITTKKVR 375
            L  G  ++  VE      E     G                        MK+     V 
Sbjct: 389 TLLSGFERAGKVESAMNIFEEMRNAGCKPNICTFNAFIKMYGNRGKFVDMMKIFDEINVC 448

Query: 376 SSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKINDP- 434
             +P + T  +++ +F + G       +F+E+K+A +      +NTLI AY +    +  
Sbjct: 449 GLSPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPERETFNTLISAYSRCGSFEQA 508

Query: 435 -NLLRRMILGGARPDAETYSLLKLA 458
             + RRM+  G  PD  TY+ +  A
Sbjct: 509 MTVYRRMLDAGVTPDLSTYNTVLAA 533



 Score = 73.2 bits (178), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 70/341 (20%), Positives = 140/341 (41%), Gaps = 49/341 (14%)

Query: 118 MKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEAN 177
            K+M+  G       FN LI   S  G  +    + R+M    V P +ST++ ++   A 
Sbjct: 477 FKEMKRAGFVPERETFNTLISAYSRCGSFEQAMTVYRRMLDAGVTPDLSTYNTVLAALAR 536

Query: 178 DHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWST 237
               E   KV ++M+    +PNE++YC L  A+A  +   +  +  E +   +       
Sbjct: 537 GGMWEQSEKVLAEMEDGRCKPNELTYCSLLHAYANGKEIGLMHSLAEEVYSGVIEPRAVL 596

Query: 238 LDVLIILYGYLAKGKDLERIWATVQEL---PNVRSKSYVLAIEAFGRIAQVSRAEELWLE 294
           L  L+++        + ER ++ ++E    P++ + + +++I  +GR   V +A E+   
Sbjct: 597 LKTLVLVCSKCDLLPEAERAFSELKERGFSPDITTLNSMVSI--YGRRQMVGKANEVLDY 654

Query: 295 MQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNL 354
           M+      +   YNS++ ++ ++    K+  +L+E+   G KP+ I+Y            
Sbjct: 655 MKERGFTPSMATYNSLMYMHSRSADFGKSEEILREILAKGIKPDIISYN----------- 703

Query: 355 VEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTK 414
                                          ++I  +     + +A  +F E++ +    
Sbjct: 704 -------------------------------TVIYAYCRNTRMRDASRIFSEMRDSGIVP 732

Query: 415 YTFVYNTLIKAYVKAKINDP--NLLRRMILGGARPDAETYS 453
               YNT I +Y    + +    ++R MI  G RP+  TY+
Sbjct: 733 DVITYNTFIGSYAADSMFEEAIGVVRYMIKHGCRPNQNTYN 773



 Score = 49.7 bits (117), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 66/302 (21%), Positives = 122/302 (40%), Gaps = 46/302 (15%)

Query: 98  YNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMK 157
           +N L+ A    G  + ++   ++M   G +     +N ++   +  G  +    +L +M+
Sbjct: 492 FNTLISAYSRCGSFEQAMTVYRRMLDAGVTPDLSTYNTVLAALARGGMWEQSEKVLAEME 551

Query: 158 ADKVAPHVSTFHILMKIEANDHNIEGLM-----KVYSDMKRSEVEPNEVSYCILATAHAV 212
             +  P+  T+  L+   AN   I GLM     +VYS +    +EP  V    L    + 
Sbjct: 552 DGRCKPNELTYCSLLHAYANGKEI-GLMHSLAEEVYSGV----IEPRAVLLKTLVLVCSK 606

Query: 213 ARLYTVAETYVEALEKSMTGNNWSTLDVLIILYG---YLAKGKDL-----ERIW----AT 260
             L   AE     L++     + +TL+ ++ +YG    + K  ++     ER +    AT
Sbjct: 607 CDLLPEAERAFSELKERGFSPDITTLNSMVSIYGRRQMVGKANEVLDYMKERGFTPSMAT 666

Query: 261 VQELPNVRSKS------------------------YVLAIEAFGRIAQVSRAEELWLEMQ 296
              L  + S+S                        Y   I A+ R  ++  A  ++ EM+
Sbjct: 667 YNSLMYMHSRSADFGKSEEILREILAKGIKPDIISYNTVIYAYCRNTRMRDASRIFSEMR 726

Query: 297 SVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVE 356
               +     YN+ I  Y  +   ++A G+++ M  +GC+PN  TY  +  G  K N  +
Sbjct: 727 DSGIVPDVITYNTFIGSYAADSMFEEAIGVVRYMIKHGCRPNQNTYNSIVDGYCKLNRKD 786

Query: 357 EG 358
           E 
Sbjct: 787 EA 788



 Score = 40.0 bits (92), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 32/153 (20%), Positives = 75/153 (49%), Gaps = 6/153 (3%)

Query: 115 LEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKI 174
           L+YMK+    G + S   +N L+ ++S          ILR++ A  + P + +++ ++  
Sbjct: 652 LDYMKER---GFTPSMATYNSLMYMHSRSADFGKSEEILREILAKGIKPDIISYNTVIYA 708

Query: 175 EANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNN 234
              +  +    +++S+M+ S + P+ ++Y     ++A   ++  A   V  + K     N
Sbjct: 709 YCRNTRMRDASRIFSEMRDSGIVPDVITYNTFIGSYAADSMFEEAIGVVRYMIKHGCRPN 768

Query: 235 WSTLDVLIILYGYLAKGKDLERIWATVQELPNV 267
            +T + ++  Y  L + KD  +++  V++L N+
Sbjct: 769 QNTYNSIVDGYCKLNR-KDEAKLF--VEDLRNL 798


>gi|242066030|ref|XP_002454304.1| hypothetical protein SORBIDRAFT_04g028250 [Sorghum bicolor]
 gi|241934135|gb|EES07280.1| hypothetical protein SORBIDRAFT_04g028250 [Sorghum bicolor]
          Length = 638

 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 81/366 (22%), Positives = 151/366 (41%), Gaps = 18/366 (4%)

Query: 98  YNNLVIACLDKGVIKLSLEYMKKMRVLGHSI-SYLVFNRLIILNSSPGRRKTIPNILRQM 156
           YN+++I  + +G      E   +M   GH     + ++ LI      GRR +   +L +M
Sbjct: 197 YNSMIIMLMHEGQYGKVHELYNEMSTEGHCFPDTMTYSALISAFCKLGRRDSATQLLNEM 256

Query: 157 KADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLY 216
           K + + P    + +L+ +     ++ G + ++ +M+     P+  +Y  L     + +  
Sbjct: 257 KENGMQPTTKIYTMLITLFFKLDDVHGALSLFEEMRHQYCRPDVFTYTEL--IRGLGKAG 314

Query: 217 TVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSKSYVLAI 276
            + E Y    E    G    T+ V+  +  +L K   L+      QE+  +R    V+  
Sbjct: 315 RIDEAYHFFYEMQREGCRPDTV-VMNNMINFLGKAGRLDDAMKLFQEMGTLRCIPSVVTY 373

Query: 277 EAFGR--IAQVSRAEEL--WLE-MQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMS 331
               +      SRA E+  W E M+      ++  Y+ +I  +CK   ++KA  LL+EM 
Sbjct: 374 NTIIKALFESKSRASEVPSWFERMKESGISPSSFTYSILIDGFCKTNRMEKAMMLLEEMD 433

Query: 332 MNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIF 391
             G  P    Y  L     K+       K  +L  +L    K    +        +I+  
Sbjct: 434 EKGFPPCPAAYCSLIDALGKA-------KRYDLACELFQELKENCGSSSARVYAVMIKHL 486

Query: 392 AEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKINDPNL--LRRMILGGARPDA 449
            + G + +A N+F+E+ K       + YN L+    +  + D  L  +RRM   G  PD 
Sbjct: 487 GKAGRLDDAINMFDEMNKLGCAPDVYAYNALMSGLARTGMLDEALSTMRRMQEHGCIPDI 546

Query: 450 ETYSLL 455
            +Y+++
Sbjct: 547 NSYNII 552



 Score = 63.2 bits (152), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 60/265 (22%), Positives = 112/265 (42%), Gaps = 14/265 (5%)

Query: 196 VEPNEVSYCILATAHAVARLYTVAETY-VEALEKSMTGNNWSTLDVLIILYGYLAKGKDL 254
           V P E+S  +    +A      +A  Y ++  +   T   ++++ ++++  G   K  +L
Sbjct: 157 VTPTELSEVVRMLGNAKMVSKAIAIFYQIKTRKCQPTAQAYNSMIIMLMHEGQYGKVHEL 216

Query: 255 ERIWATVQE-LPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISV 313
               +T     P+  + +Y   I AF ++ +   A +L  EM+       T+ Y  +I++
Sbjct: 217 YNEMSTEGHCFPD--TMTYSALISAFCKLGRRDSATQLLNEMKENGMQPTTKIYTMLITL 274

Query: 314 YCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKK 373
           + K   +  A  L +EM    C+P+  TY  L  G  K+  ++E +             +
Sbjct: 275 FFKLDDVHGALSLFEEMRHQYCRPDVFTYTELIRGLGKAGRIDEAY-------HFFYEMQ 327

Query: 374 VRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKIND 433
                P      ++I    + G + +A  LF+E+           YNT+IKA  ++K   
Sbjct: 328 REGCRPDTVVMNNMINFLGKAGRLDDAMKLFQEMGTLRCIPSVVTYNTIIKALFESKSRA 387

Query: 434 ---PNLLRRMILGGARPDAETYSLL 455
              P+   RM   G  P + TYS+L
Sbjct: 388 SEVPSWFERMKESGISPSSFTYSIL 412



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 81/407 (19%), Positives = 148/407 (36%), Gaps = 48/407 (11%)

Query: 53  IRERPYRPKELDYSYLLEFTIKNHGISQGEKLFCCIPKDY--QNELLYNNLVIACLDKGV 110
           ++E   +P    Y+ L+    K   +     LF  +   Y   +   Y  L+      G 
Sbjct: 256 MKENGMQPTTKIYTMLITLFFKLDDVHGALSLFEEMRHQYCRPDVFTYTELIRGLGKAGR 315

Query: 111 IKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHI 170
           I  +  +  +M+  G     +V N +I      GR      + ++M   +  P V T++ 
Sbjct: 316 IDEAYHFFYEMQREGCRPDTVVMNNMINFLGKAGRLDDAMKLFQEMGTLRCIPSVVTYNT 375

Query: 171 LMK--IEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEK 228
           ++K   E+     E +   +  MK S + P+  +Y IL                   +EK
Sbjct: 376 IIKALFESKSRASE-VPSWFERMKESGISPSSFTYSILIDGFC----------KTNRMEK 424

Query: 229 SMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRA 288
           +M           ++L     KG             P   + +Y   I+A G+  +   A
Sbjct: 425 AM-----------MLLEEMDEKG------------FPPCPA-AYCSLIDALGKAKRYDLA 460

Query: 289 EELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALG 348
            EL+ E++      +   Y  +I    K G +D A  +  EM+  GC P+   Y  L  G
Sbjct: 461 CELFQELKENCGSSSARVYAVMIKHLGKAGRLDDAINMFDEMNKLGCAPDVYAYNALMSG 520

Query: 349 CFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELK 408
             ++ +++E    +          +     P + +   I+   A+ G    A  +   +K
Sbjct: 521 LARTGMLDEALSTMR-------RMQEHGCIPDINSYNIILNGLAKTGGPHRAMEMLSNMK 573

Query: 409 KANYTKYTFVYNTLIKAYVKAKIND--PNLLRRMILGGARPDAETYS 453
           ++        YNT++ A   A + +    L+  M   G   D  TYS
Sbjct: 574 QSTVRPDVVSYNTVLGALSHAGMFEEAAKLMEEMNTLGFEYDLITYS 620


>gi|449530359|ref|XP_004172163.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g02860-like [Cucumis sativus]
          Length = 831

 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 90/438 (20%), Positives = 191/438 (43%), Gaps = 27/438 (6%)

Query: 33  INRLRKLQLNKRALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQGEKLFCCIPKDY 92
           I+  R+  L + A EV E  ++   + P ++ Y+ LL+     +G S+  +    + K+ 
Sbjct: 298 ISSCRRGSLYEEAAEVFEE-MKAAGFSPDKVTYNALLDV----YGKSRRPREAMEVLKEM 352

Query: 93  QNE------LLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRR 146
           +        + YN+L+ A    G++  ++E   +M   G       +  L+      G+ 
Sbjct: 353 EASGFAPSIVTYNSLISAYARDGLLDEAMELKSQMVKKGIKPDVFTYTTLLSGFEKTGKD 412

Query: 147 KTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCIL 206
                +  +M+     P++ TF+ L+K+  N  N   +MKV+ ++K  E  P+ V++  L
Sbjct: 413 DYAMKVFEEMRVAGCQPNICTFNALIKMHGNRGNFVEMMKVFEEIKICECVPDIVTWNTL 472

Query: 207 ATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILY---GYLAKGKDLERIWATVQE 263
                   + +      + ++++       T + LI  Y   G+  +   + R       
Sbjct: 473 LAVFGQNGMDSEVSGVFKEMKRAGFVPERDTFNTLISAYSRCGFFDQAMAIYRRMLDAGV 532

Query: 264 LPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKA 323
            P++ + + VLA  A  R     ++E++  EM+  +       Y S++  Y     +++ 
Sbjct: 533 TPDLSTYNAVLA--ALARGGLWEQSEKVLAEMKDGRCKPNELTYCSLLHAYANGKEVERM 590

Query: 324 SGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKA-LELGMKLITTKKVRSSTPWLE 382
           S L +E+     +P A+  + L L   KS+L+ E  +A LEL        + +  +P + 
Sbjct: 591 SALAEEIYSGIIEPQAVLLKTLVLVYSKSDLLTETERAFLEL--------REQGFSPDIT 642

Query: 383 TTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKI--NDPNLLRRM 440
           T  +++ I+  +  V     +   +K + +T     YN+L+  Y + +      ++LR +
Sbjct: 643 TLNAMVSIYGRRRMVSKTNEILNFIKDSGFTPSLTTYNSLMYMYSRTEHFEKSEDILREI 702

Query: 441 ILGGARPDAETYSLLKLA 458
           I  G +PD  +++ +  A
Sbjct: 703 IAKGMKPDIISFNTVIFA 720



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 84/388 (21%), Positives = 153/388 (39%), Gaps = 72/388 (18%)

Query: 101 LVIACLDK-GVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKAD 159
           ++I+ L K G    +   +  +R  G  I    +  LI   +S GR +    + ++++ +
Sbjct: 190 VIISVLGKEGRASFAASLLHDLRNDGVHIDIYAYTSLITAYASNGRYREAVMVFKKLEEE 249

Query: 160 KVAPHVSTFHILMKIEAND----HNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARL 215
              P + T+++++ +          I GL+     MK S V P+  +Y  L ++     L
Sbjct: 250 GCRPTLITYNVILNVYGKMGMPWSKIAGLV---DSMKSSGVAPDLYTYNTLISSCRRGSL 306

Query: 216 YTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSKSYVLA 275
           Y  A    E ++                     A G   +++             +Y   
Sbjct: 307 YEEAAEVFEEMK---------------------AAGFSPDKV-------------TYNAL 332

Query: 276 IEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGC 335
           ++ +G+  +   A E+  EM++     +   YNS+IS Y ++G +D+A  L  +M   G 
Sbjct: 333 LDVYGKSRRPREAMEVLKEMEASGFAPSIVTYNSLISAYARDGLLDEAMELKSQMVKKGI 392

Query: 336 KPNAITYRHLALGCFKSNLVEEGFKALE----LG------------------------MK 367
           KP+  TY  L  G  K+   +   K  E     G                        MK
Sbjct: 393 KPDVFTYTTLLSGFEKTGKDDYAMKVFEEMRVAGCQPNICTFNALIKMHGNRGNFVEMMK 452

Query: 368 LITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYV 427
           +    K+    P + T  +++ +F + G       +F+E+K+A +      +NTLI AY 
Sbjct: 453 VFEEIKICECVPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPERDTFNTLISAYS 512

Query: 428 KAKINDPNL--LRRMILGGARPDAETYS 453
           +    D  +   RRM+  G  PD  TY+
Sbjct: 513 RCGFFDQAMAIYRRMLDAGVTPDLSTYN 540



 Score = 71.2 bits (173), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 79/378 (20%), Positives = 149/378 (39%), Gaps = 53/378 (14%)

Query: 83  KLFCCIPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSS 142
           K+  C+P    + + +N L+      G+        K+M+  G       FN LI   S 
Sbjct: 458 KICECVP----DIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPERDTFNTLISAYSR 513

Query: 143 PGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVS 202
            G       I R+M    V P +ST++ ++   A     E   KV ++MK    +PNE++
Sbjct: 514 CGFFDQAMAIYRRMLDAGVTPDLSTYNAVLAALARGGLWEQSEKVLAEMKDGRCKPNELT 573

Query: 203 YCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQ 262
           YC L  A+A  +         E +   +       L  L+++Y       + ER +  ++
Sbjct: 574 YCSLLHAYANGKEVERMSALAEEIYSGIIEPQAVLLKTLVLVYSKSDLLTETERAFLELR 633

Query: 263 EL---PNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGF 319
           E    P++ + + +++I  +GR   VS+  E+   ++      +   YNS++ +Y +   
Sbjct: 634 EQGFSPDITTLNAMVSI--YGRRRMVSKTNEILNFIKDSGFTPSLTTYNSLMYMYSRTEH 691

Query: 320 IDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTP 379
            +K+  +L+E+   G KP+ I++                                     
Sbjct: 692 FEKSEDILREIIAKGMKPDIISFN------------------------------------ 715

Query: 380 WLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAK--INDPNLL 437
                 ++I  +   G +  A  +F E+K          YNT I +Y      I   +++
Sbjct: 716 ------TVIFAYCRNGRMKEASRIFAEMKDFGLAPDVITYNTFIASYASDSMFIEAIDVV 769

Query: 438 RRMILGGARPDAETYSLL 455
           + MI    +P+  TY+ L
Sbjct: 770 KYMIKNECKPNQNTYNSL 787


>gi|293330959|ref|NP_001169662.1| uncharacterized protein LOC100383543 [Zea mays]
 gi|224030695|gb|ACN34423.1| unknown [Zea mays]
 gi|414870691|tpg|DAA49248.1| TPA: hypothetical protein ZEAMMB73_502001 [Zea mays]
          Length = 756

 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 82/350 (23%), Positives = 147/350 (42%), Gaps = 32/350 (9%)

Query: 120 KMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDH 179
           ++   G      V+N L+ + +   R K + ++  +M    + P V T + L+K     H
Sbjct: 150 QLNTFGVQADTAVYNHLLNVLAEGSRMKLLESVYNEMTDRGIQPDVVTLNTLIKALCRAH 209

Query: 180 NIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEAL----EKSM-TGNN 234
            +   + +  +M    V P+E ++  L           + E  +EA      K M TG +
Sbjct: 210 QVRTAVLMLEEMSSHAVAPDETTFTTLMQGF-------IEEGSIEAALRVKTKMMETGCS 262

Query: 235 WSTLDVLIILYGYLAKGKDLERIWATVQ-------ELPNVRSKSYVLAIEAFGRIAQVSR 287
            + + V +++ GY   G+ +E     +Q       E   V   ++V  +   G ++   +
Sbjct: 263 PTRVTVNVLINGYCKMGR-VEDALGYIQKEIADGFEPDQVTYNTFVHCLCQNGHVSHALK 321

Query: 288 AEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLAL 347
             +L L+      +     YN+VI+   KNG +D+A G++ +M   GC P+  T+  L +
Sbjct: 322 VMDLMLQEGHDPDVFT---YNTVINCLSKNGELDEAKGIVNQMVDRGCLPDTTTFNTLIV 378

Query: 348 GCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEEL 407
                N +EE   AL+L  +L     V+  +P + T   +I    + GD      LFEE+
Sbjct: 379 ALCSQNRLEE---ALDLAREL----TVKGLSPDVYTFNILINALCKVGDPHLGIRLFEEM 431

Query: 408 KKANYTKYTFVYNTLIKAYVKAK--INDPNLLRRMILGGARPDAETYSLL 455
           K +        YN LI         +N  +LL+ M   G      TY+ +
Sbjct: 432 KSSGCAPDEVTYNILIDHLCSMGKLVNALDLLKEMESNGCPRSTVTYNTI 481



 Score = 80.9 bits (198), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 81/404 (20%), Positives = 176/404 (43%), Gaps = 13/404 (3%)

Query: 58  YRPKELDYSYLLEFTIKNHGISQGEKLF-CCIPKDYQNELLYNNLVIACLDK-GVIKLSL 115
           + P ++ Y+  +    +N  +S   K+    + + +  ++   N VI CL K G +  + 
Sbjct: 296 FEPDQVTYNTFVHCLCQNGHVSHALKVMDLMLQEGHDPDVFTYNTVINCLSKNGELDEAK 355

Query: 116 EYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIE 175
             + +M   G       FN LI+   S  R +   ++ R++    ++P V TF+IL+   
Sbjct: 356 GIVNQMVDRGCLPDTTTFNTLIVALCSQNRLEEALDLARELTVKGLSPDVYTFNILINAL 415

Query: 176 ANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNW 235
               +    ++++ +MK S   P+EV+Y IL            A   ++ +E +    + 
Sbjct: 416 CKVGDPHLGIRLFEEMKSSGCAPDEVTYNILIDHLCSMGKLVNALDLLKEMESNGCPRST 475

Query: 236 STLDVLIILYGYLAKGKDLERIWATVQELPNVRSK-SYVLAIEAFGRIAQVSRAEELWLE 294
            T + +I       + ++ E ++  +      RS  ++   I+   +  ++  A EL  +
Sbjct: 476 VTYNTIIDALCKQMRIEEAEEVFDQMDAHGISRSAVTFNTLIDGLCKAKRIDDATELIEQ 535

Query: 295 MQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNL 354
           M       +   YNS+++ YCK G + KA+ +L+ M+ NG + + +TY  L  G  K+  
Sbjct: 536 MVKEGLQPSNITYNSILTHYCKQGDLKKAADILETMTANGFEIDVVTYGTLINGLCKAGR 595

Query: 355 VEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTK 414
                   ++ +KL+   +++   P  +    +I+    + ++ +A +LF E+ +     
Sbjct: 596 T-------QVALKLLRGMRIKGIRPTPKAYNPVIQSLFRRNNLRDALSLFREMTEVGEPP 648

Query: 415 YTFVYNTLIKAYVK--AKINDP-NLLRRMILGGARPDAETYSLL 455
               Y  + +   +    I +  + L  M+  G  P+  ++ +L
Sbjct: 649 DALTYKIVFRGLCRGGGPIKEAFDFLVEMVNKGFMPEFSSFRML 692


>gi|299471515|emb|CBN80001.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 687

 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 107/470 (22%), Positives = 180/470 (38%), Gaps = 75/470 (15%)

Query: 20  EGFPVHRGEIFHSINRLRKLQLNKRALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGIS 79
           +G P +      +I    K +  + A++++E VI E+ + P    Y+ +++   K     
Sbjct: 211 QGVPPNLITYNSAIGACAKGRRWEEAMDLLEEVI-EQGFPPSTRTYNPVIDACAKGGRWL 269

Query: 80  Q-----GEKLFCCIPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFN 134
           +     G+ L   IP D    + Y++++ AC      K +++ +++MR  G S + + +N
Sbjct: 270 EAMDLLGQMLTNDIPADV---ISYSSVIAACGRGRRWKEAMDLLEQMRTQGVSPNVISYN 326

Query: 135 RLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEA-NDHNIEGLMKVYSDMKR 193
             I   +   R K   ++LR+M    + P V +++      A N   +E L ++  +M  
Sbjct: 327 SAIDACAKGDRWKEALDLLREMTTVGLVPTVISYNSATAACAVNGRWVEAL-ELLKEMPA 385

Query: 194 SEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKD 253
             + PN +SY                     AL+    G  W     + +L G    G D
Sbjct: 386 QGIAPNTISY-------------------NSALDACAKGGQWE--KAVKLLRGMSTVGSD 424

Query: 254 LERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISV 313
            + I             S+  AI+A GR  Q   A EL  EM +         YNS I  
Sbjct: 425 PDII-------------SFNSAIDACGRGQQWETAVELLREMPTAGLTPNVITYNSAIEA 471

Query: 314 YCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKAL----------- 362
             ++    +A GL +EM   G  PN +TY  +   C K    E   + L           
Sbjct: 472 CGRSARWQEAMGLFREMPTRGLSPNVVTYNSMIDACAKGEQWELAVQLLTGMPARGVAPD 531

Query: 363 -----------------ELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFE 405
                            EL ++L+     R   P + +  S +   A+ G    A  L +
Sbjct: 532 VISYNSAIEACGKGEQWELALQLLKGMPTRGPKPDIISYNSAVTACAKSGRWREALGLLK 591

Query: 406 ELKKANYTKYTFVYNTLIKAYVKAKIND--PNLLRRMILGGARPDAETYS 453
           ++     T  T  Y   I A  K +  D    +L+ M   GA P+  TYS
Sbjct: 592 DMATVGLTPNTVSYGAAIHACGKGEQWDVAVRILKEMQTHGATPNLITYS 641



 Score = 79.0 bits (193), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 98/400 (24%), Positives = 151/400 (37%), Gaps = 51/400 (12%)

Query: 98  YNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMK 157
           YN  + AC +      ++  +++M   G +   + +N  I   S  GR K   ++L QM 
Sbjct: 113 YNIAIAACSNGRQWATAVRLLREMPTEGVTPDVVTYNSAIAACSKGGRWKEAMDLLTQMV 172

Query: 158 A--DKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARL 215
           A  + + P V T++  +   +N    +  M +   M    V PN ++Y     A A  R 
Sbjct: 173 APTEGITPDVVTYNSAIAACSNGGRWKEAMDLLEQMVAQGVPPNLITYNSAIGACAKGRR 232

Query: 216 YTVA----------------ETYVEALEKSMTGNNW-STLDVL-----------IILYGY 247
           +  A                 TY   ++    G  W   +D+L           +I Y  
Sbjct: 233 WEEAMDLLEEVIEQGFPPSTRTYNPVIDACAKGGRWLEAMDLLGQMLTNDIPADVISYSS 292

Query: 248 LAKGKDLERIWATVQEL----------PNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQS 297
           +       R W    +L          PNV   SY  AI+A  +  +   A +L  EM +
Sbjct: 293 VIAACGRGRRWKEAMDLLEQMRTQGVSPNV--ISYNSAIDACAKGDRWKEALDLLREMTT 350

Query: 298 VKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEE 357
           V  +     YNS  +    NG   +A  LLKEM   G  PN I+Y      C K    E+
Sbjct: 351 VGLVPTVISYNSATAACAVNGRWVEALELLKEMPAQGIAPNTISYNSALDACAKGGQWEK 410

Query: 358 GFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTF 417
             K L  GM  +       S P + +  S I+          A  L  E+  A  T    
Sbjct: 411 AVKLLR-GMSTV------GSDPDIISFNSAIDACGRGQQWETAVELLREMPTAGLTPNVI 463

Query: 418 VYNTLIKAYVK-AKINDP-NLLRRMILGGARPDAETYSLL 455
            YN+ I+A  + A+  +   L R M   G  P+  TY+ +
Sbjct: 464 TYNSAIEACGRSARWQEAMGLFREMPTRGLSPNVVTYNSM 503



 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 73/319 (22%), Positives = 124/319 (38%), Gaps = 38/319 (11%)

Query: 94  NELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNIL 153
           N + YN+ + AC   G  + +++ ++ M  +G     + FN  I       + +T   +L
Sbjct: 391 NTISYNSALDACAKGGQWEKAVKLLRGMSTVGSDPDIISFNSAIDACGRGQQWETAVELL 450

Query: 154 RQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVA 213
           R+M    + P+V T++  ++        +  M ++ +M    + PN V+Y  +  A A  
Sbjct: 451 REMPTAGLTPNVITYNSAIEACGRSARWQEAMGLFREMPTRGLSPNVVTYNSMIDACAKG 510

Query: 214 RLYTVAE----------------TYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERI 257
             + +A                 +Y  A+E    G  W     L +L G   +G   + I
Sbjct: 511 EQWELAVQLLTGMPARGVAPDVISYNSAIEACGKGEQWEL--ALQLLKGMPTRGPKPDII 568

Query: 258 WATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKN 317
                        SY  A+ A  +  +   A  L  +M +V     T  Y + I    K 
Sbjct: 569 -------------SYNSAVTACAKSGRWREALGLLKDMATVGLTPNTVSYGAAIHACGKG 615

Query: 318 GFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSS 377
              D A  +LKEM  +G  PN ITY      C K    +E        + L+T  + +  
Sbjct: 616 EQWDVAVRILKEMQTHGATPNLITYSAAIDACAKQGRWKE-------AVDLLTDLRRQGL 668

Query: 378 TPWLETTLSIIEIFAEKGD 396
           TP  +T L++I  F    D
Sbjct: 669 TPDAQTYLTVISAFQRCSD 687



 Score = 66.6 bits (161), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 85/367 (23%), Positives = 143/367 (38%), Gaps = 22/367 (5%)

Query: 96  LLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQ 155
           + YN+ + AC + G  K +++ +++M   G   + + +N  I   +   R +   ++L +
Sbjct: 183 VTYNSAIAACSNGGRWKEAMDLLEQMVAQGVPPNLITYNSAIGACAKGRRWEEAMDLLEE 242

Query: 156 MKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARL 215
           +      P   T++ ++   A        M +   M  +++  + +SY  +  A    R 
Sbjct: 243 VIEQGFPPSTRTYNPVIDACAKGGRWLEAMDLLGQMLTNDIPADVISYSSVIAACGRGRR 302

Query: 216 YTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGK------DLERIWATVQELPNVRS 269
           +  A   +E +       N  + +  I      AKG       DL R   TV  +P V S
Sbjct: 303 WKEAMDLLEQMRTQGVSPNVISYNSAI---DACAKGDRWKEALDLLREMTTVGLVPTVIS 359

Query: 270 -KSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLK 328
             S   A    GR  +   A EL  EM +      T  YNS +    K G  +KA  LL+
Sbjct: 360 YNSATAACAVNGRWVE---ALELLKEMPAQGIAPNTISYNSALDACAKGGQWEKAVKLLR 416

Query: 329 EMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSII 388
            MS  G  P+ I++      C +        +  E  ++L+        TP + T  S I
Sbjct: 417 GMSTVGSDPDIISFNSAIDACGRG-------QQWETAVELLREMPTAGLTPNVITYNSAI 469

Query: 389 EIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKIND--PNLLRRMILGGAR 446
           E          A  LF E+     +     YN++I A  K +  +    LL  M   G  
Sbjct: 470 EACGRSARWQEAMGLFREMPTRGLSPNVVTYNSMIDACAKGEQWELAVQLLTGMPARGVA 529

Query: 447 PDAETYS 453
           PD  +Y+
Sbjct: 530 PDVISYN 536



 Score = 42.0 bits (97), Expect = 0.72,   Method: Compositional matrix adjust.
 Identities = 42/153 (27%), Positives = 63/153 (41%), Gaps = 9/153 (5%)

Query: 304 TEQYNSVISVYCKNGF-IDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKAL 362
           T  YN  I+  C NG     A  LL+EM   G  P+ +TY      C K    +E   A+
Sbjct: 110 TTSYNIAIAA-CSNGRQWATAVRLLREMPTEGVTPDVVTYNSAIAACSKGGRWKE---AM 165

Query: 363 ELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTL 422
           +L  +++        TP + T  S I   +  G    A +L E++           YN+ 
Sbjct: 166 DLLTQMVA--PTEGITPDVVTYNSAIAACSNGGRWKEAMDLLEQMVAQGVPPNLITYNSA 223

Query: 423 IKAYVKAKINDP--NLLRRMILGGARPDAETYS 453
           I A  K +  +   +LL  +I  G  P   TY+
Sbjct: 224 IGACAKGRRWEEAMDLLEEVIEQGFPPSTRTYN 256


>gi|356551783|ref|XP_003544253.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09900-like [Glycine max]
          Length = 576

 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 89/398 (22%), Positives = 160/398 (40%), Gaps = 52/398 (13%)

Query: 98  YNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMK 157
           YN L+      G I+ +L  + +M V  ++ +Y   + ++      G+ K    +L +  
Sbjct: 152 YNVLISGYCKSGEIEEALRVLDRMGVSPNAATY---DAVLCSLCDRGKLKQAMQVLGRQL 208

Query: 158 ADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYT 217
             K  P V T  +L+     +  +   MK++++M+    +P+ V+Y +L           
Sbjct: 209 QSKCYPDVVTCTVLIDATCKESGVGQAMKLFNEMRNKGCKPDVVTYNVLIKGFCKGGRLD 268

Query: 218 VAETYVEALE---------------KSM-TGNNW-------------------STLDVLI 242
            A  +++ L                +S+ +G  W                    T ++LI
Sbjct: 269 EAIRFLKKLPSYGCQPDVISHNMILRSLCSGGRWMDAMKLLATMLRKGCLPSVVTFNILI 328

Query: 243 ILY---GYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVK 299
                 G L K  ++  +       PN  S+S+   I+ F     + RA E    M S  
Sbjct: 329 NFLCQKGLLGKALNVLEMMPKHGHTPN--SRSFNPLIQGFCNGKGIDRAIEYLEIMVSRG 386

Query: 300 QLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGF 359
                  YN +++  CK+G +D A  +L ++S  GC P+ I+Y  +  G  K        
Sbjct: 387 CYPDIVTYNILLTALCKDGKVDDAVVILSQLSSKGCSPSLISYNTVIDGLLKVG------ 440

Query: 360 KALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVY 419
           KA EL ++L+     +   P L T  S++   + +G V  A   F  LK+       F+Y
Sbjct: 441 KA-ELAVELLEEMCYKGLKPDLITCTSVVGGLSREGKVREAMKFFHYLKRFAIRPNAFIY 499

Query: 420 NTLIKAYVKAKIND--PNLLRRMILGGARPDAETYSLL 455
           N++I    K++      + L  M+  G +P   TY+ L
Sbjct: 500 NSIITGLCKSQQTSLAIDFLADMVAKGCKPTEATYTTL 537



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 48/182 (26%), Positives = 86/182 (47%), Gaps = 12/182 (6%)

Query: 276 IEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGC 335
           I  F +I +   A ++   ++    +     YN +IS YCK+G I++A  +L  M   G 
Sbjct: 121 IREFCKIGRTKNASQIMGILEESGAVIDVTSYNVLISGYCKSGEIEEALRVLDRM---GV 177

Query: 336 KPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKG 395
            PNA TY   A+ C   +L + G   L+  M+++  +      P + T   +I+   ++ 
Sbjct: 178 SPNAATYD--AVLC---SLCDRG--KLKQAMQVLGRQLQSKCYPDVVTCTVLIDATCKES 230

Query: 396 DVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKINDPNL--LRRMILGGARPDAETYS 453
            VG A  LF E++          YN LIK + K    D  +  L+++   G +PD  +++
Sbjct: 231 GVGQAMKLFNEMRNKGCKPDVVTYNVLIKGFCKGGRLDEAIRFLKKLPSYGCQPDVISHN 290

Query: 454 LL 455
           ++
Sbjct: 291 MI 292



 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 81/365 (22%), Positives = 143/365 (39%), Gaps = 57/365 (15%)

Query: 43  KRALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQGEKLF------CCIPKDYQNEL 96
           K+A++V+   ++ + Y P  +  + L++ T K  G+ Q  KLF       C P    + +
Sbjct: 198 KQAMQVLGRQLQSKCY-PDVVTCTVLIDATCKESGVGQAMKLFNEMRNKGCKP----DVV 252

Query: 97  LYNNLVIACLDKGVIKLSLEYMKKM-------RVLGHSI--------------------- 128
            YN L+      G +  ++ ++KK+        V+ H++                     
Sbjct: 253 TYNVLIKGFCKGGRLDEAIRFLKKLPSYGCQPDVISHNMILRSLCSGGRWMDAMKLLATM 312

Query: 129 -------SYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNI 181
                  S + FN LI      G      N+L  M      P+  +F+ L++   N   I
Sbjct: 313 LRKGCLPSVVTFNILINFLCQKGLLGKALNVLEMMPKHGHTPNSRSFNPLIQGFCNGKGI 372

Query: 182 EGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVL 241
           +  ++    M      P+ V+Y IL TA  + +   V +  V   + S  G + S +   
Sbjct: 373 DRAIEYLEIMVSRGCYPDIVTYNILLTA--LCKDGKVDDAVVILSQLSSKGCSPSLISYN 430

Query: 242 IILYGYLAKGKDLERIWATVQEL------PNVRSKSYVLAIEAFGRIAQVSRAEELWLEM 295
            ++ G L  GK  E     ++E+      P++ + + V+      R  +V  A + +  +
Sbjct: 431 TVIDGLLKVGK-AELAVELLEEMCYKGLKPDLITCTSVVG--GLSREGKVREAMKFFHYL 487

Query: 296 QSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLV 355
           +          YNS+I+  CK+     A   L +M   GCKP   TY  L  G     L 
Sbjct: 488 KRFAIRPNAFIYNSIITGLCKSQQTSLAIDFLADMVAKGCKPTEATYTTLIKGITYEGLA 547

Query: 356 EEGFK 360
           E+  K
Sbjct: 548 EDASK 552


>gi|242047602|ref|XP_002461547.1| hypothetical protein SORBIDRAFT_02g004530 [Sorghum bicolor]
 gi|241924924|gb|EER98068.1| hypothetical protein SORBIDRAFT_02g004530 [Sorghum bicolor]
          Length = 696

 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 102/434 (23%), Positives = 181/434 (41%), Gaps = 25/434 (5%)

Query: 36  LRKLQLNKRALEVMEWVIRERP---YRPKELDYSYLLEFTIKNHGISQGEKLFCCIPKDY 92
           LR L   KR  + M  V+R  P     P    Y+ LL+         +  +L   + +D 
Sbjct: 186 LRTLCAEKRTSDAMNIVLRRMPELGCTPDVFSYTTLLKGLCAEKKCEEAAELIHMMAEDG 245

Query: 93  QN----ELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKT 148
            N     + Y  ++     +G +  +     KM   G   + +  N +I           
Sbjct: 246 DNCPPNVVSYTTVIHGFFKEGDVGKAYTLFCKMLDHGIPPNVVTCNSVIDGLCKVQAMDK 305

Query: 149 IPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILAT 208
              +L+QM  + + P+ +T++ L+    +       +++  +M R    PN V+Y +L  
Sbjct: 306 AEAVLQQMIDEHIMPNCTTYNSLIHGYLSSGQWTEAVRILKEMSRDGQRPNVVTYSMLID 365

Query: 209 AHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQEL---P 265
               + L+  A     ++ +S    N ST   L  L+GY  +G  ++     V++L    
Sbjct: 366 CLCKSGLHAEAREIFNSMIQSGQKPNASTYGSL--LHGYATEGNLVD--MNNVKDLMVQN 421

Query: 266 NVRSKSYVLAIE--AFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKA 323
            +R   +V  IE  A+ +  ++  A   + +MQ    +     Y +VI   CK G +D A
Sbjct: 422 GMRPGRHVFNIEIYAYCKCGRLDEASLTFNKMQQQGFMPDIVAYTTVIDGLCKIGRLDDA 481

Query: 324 SGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLET 383
                +M  +G  P+ IT+  L  G       E   KA EL  +++     R   P + T
Sbjct: 482 MSRFCQMIDDGLSPDIITFNTLIHGFALHGKWE---KAEELFYEMMD----RGIPPNVNT 534

Query: 384 TLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAY-VKAKINDP-NLLRRMI 441
             S+I+   ++G V  A  LF+ + +A        YNT+I  Y +  ++ +   LL  M+
Sbjct: 535 FNSMIDKLFKEGKVTEARKLFDLMPRAGAKPNVVSYNTMIHGYFIAGEVGEVMKLLDDML 594

Query: 442 LGGARPDAETYSLL 455
           L G +P A T++ L
Sbjct: 595 LIGLKPTAVTFNTL 608



 Score = 50.8 bits (120), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 73/334 (21%), Positives = 130/334 (38%), Gaps = 14/334 (4%)

Query: 94  NELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNIL 153
           N   YN+L+   L  G    ++  +K+M   G   + + ++ LI      G       I 
Sbjct: 321 NCTTYNSLIHGYLSSGQWTEAVRILKEMSRDGQRPNVVTYSMLIDCLCKSGLHAEAREIF 380

Query: 154 RQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHA-V 212
             M      P+ ST+  L+   A + N+  +  V   M ++ + P    + I   A+   
Sbjct: 381 NSMIQSGQKPNASTYGSLLHGYATEGNLVDMNNVKDLMVQNGMRPGRHVFNIEIYAYCKC 440

Query: 213 ARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSKSY 272
            RL   + T+ +  ++    +  +   V+  L         + R    + +  +    ++
Sbjct: 441 GRLDEASLTFNKMQQQGFMPDIVAYTTVIDGLCKIGRLDDAMSRFCQMIDDGLSPDIITF 500

Query: 273 VLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSM 332
              I  F    +  +AEEL+ EM           +NS+I    K G + +A  L   M  
Sbjct: 501 NTLIHGFALHGKWEKAEELFYEMMDRGIPPNVNTFNSMIDKLFKEGKVTEARKLFDLMPR 560

Query: 333 NGCKPNAITYRHLALGCFKSNLVEEGFKALE----LGMK--------LITTKKVRSSTPW 380
            G KPN ++Y  +  G F +  V E  K L+    +G+K        L+         P 
Sbjct: 561 AGAKPNVVSYNTMIHGYFIAGEVGEVMKLLDDMLLIGLKPTAVTFNTLLDGMVSMGLKPD 620

Query: 381 LETTLSIIEIFAEKGDVGNAENLFEE-LKKANYT 413
           + T  ++I+   E G + +   LF E L KA+ T
Sbjct: 621 VVTCKTLIDSCCEDGRIEDILTLFREMLGKADKT 654


>gi|9502386|gb|AAF88093.1|AC025417_21 T12C24.22 [Arabidopsis thaliana]
          Length = 1245

 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 65/332 (19%), Positives = 147/332 (44%), Gaps = 8/332 (2%)

Query: 98  YNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMK 157
           Y+ ++ +    G I  ++   K+M   G   S + +N L+      G+      +L+ M 
Sbjct: 221 YSTIIDSLCRDGCIDAAISLFKEMETKGIKSSVVTYNSLVRGLCKAGKWNDGALLLKDMV 280

Query: 158 ADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYT 217
           + ++ P+V TF++L+ +   +  ++   ++Y +M    + PN ++Y  L   + +    +
Sbjct: 281 SREIVPNVITFNVLLDVFVKEGKLQEANELYKEMITRGISPNIITYNTLMDGYCMQNRLS 340

Query: 218 VAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSK-SYVLAI 276
            A   ++ + ++    +  T   LI  Y  + +  D  +++  + +   V +  +Y + +
Sbjct: 341 EANNMLDLMVRNKCSPDIVTFTSLIKGYCMVKRVDDGMKVFRNISKRGLVANAVTYSILV 400

Query: 277 EAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCK 336
           + F +  ++  AEEL+ EM S   L     Y  ++   C NG ++KA  + +++  +   
Sbjct: 401 QGFCQSGKIKLAEELFQEMVSHGVLPDVMTYGILLDGLCDNGKLEKALEIFEDLQKSKMD 460

Query: 337 PNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGD 396
              + Y  +  G  K   VE+ +        L  +   +   P + T   +I    +KG 
Sbjct: 461 LGIVMYTTIIEGMCKGGKVEDAW-------NLFCSLPCKGVKPNVMTYTVMISGLCKKGS 513

Query: 397 VGNAENLFEELKKANYTKYTFVYNTLIKAYVK 428
           +  A  L  ++++         YNTLI+A+++
Sbjct: 514 LSEANILLRKMEEDGNAPNDCTYNTLIRAHLR 545



 Score = 62.0 bits (149), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 46/187 (24%), Positives = 89/187 (47%), Gaps = 9/187 (4%)

Query: 271 SYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEM 330
           +Y   +    R    S A +L  +M+          Y+++I   C++G ID A  L KEM
Sbjct: 185 TYNSIVNGICRSGDTSLALDLLRKMEERNVKADVFTYSTIIDSLCRDGCIDAAISLFKEM 244

Query: 331 SMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEI 390
              G K + +TY  L  G  K+    +G     L +K + ++++    P + T   ++++
Sbjct: 245 ETKGIKSSVVTYNSLVRGLCKAGKWNDG----ALLLKDMVSREI---VPNVITFNVLLDV 297

Query: 391 FAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAY-VKAKINDP-NLLRRMILGGARPD 448
           F ++G +  A  L++E+     +     YNTL+  Y ++ ++++  N+L  M+     PD
Sbjct: 298 FVKEGKLQEANELYKEMITRGISPNIITYNTLMDGYCMQNRLSEANNMLDLMVRNKCSPD 357

Query: 449 AETYSLL 455
             T++ L
Sbjct: 358 IVTFTSL 364



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 68/321 (21%), Positives = 130/321 (40%), Gaps = 43/321 (13%)

Query: 94  NELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNIL 153
           N + +N L+   + +G ++ + E  K+M   G S + + +N L+       R     N+L
Sbjct: 287 NVITFNVLLDVFVKEGKLQEANELYKEMITRGISPNIITYNTLMDGYCMQNRLSEANNML 346

Query: 154 RQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVA 213
             M  +K +P + TF  L+K       ++  MKV+ ++ +  +  N V+Y IL      +
Sbjct: 347 DLMVRNKCSPDIVTFTSLIKGYCMVKRVDDGMKVFRNISKRGLVANAVTYSILVQGFCQS 406

Query: 214 RLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSKSYV 273
               +AE   + +                + +G                 LP+V   +Y 
Sbjct: 407 GKIKLAEELFQEM----------------VSHGV----------------LPDV--MTYG 432

Query: 274 LAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMN 333
           + ++      ++ +A E++ ++Q  K       Y ++I   CK G ++ A  L   +   
Sbjct: 433 ILLDGLCDNGKLEKALEIFEDLQKSKMDLGIVMYTTIIEGMCKGGKVEDAWNLFCSLPCK 492

Query: 334 GCKPNAITYRHLALG-CFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFA 392
           G KPN +TY  +  G C K +L E           L+   +   + P   T  ++I    
Sbjct: 493 GVKPNVMTYTVMISGLCKKGSLSEANI--------LLRKMEEDGNAPNDCTYNTLIRAHL 544

Query: 393 EKGDVGNAENLFEELKKANYT 413
             GD+  +  L EE+K   ++
Sbjct: 545 RDGDLTASAKLIEEMKSCGFS 565



 Score = 52.8 bits (125), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 56/273 (20%), Positives = 111/273 (40%), Gaps = 43/273 (15%)

Query: 185 MKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIIL 244
           + ++ +M RS   P+ V +    +A A  + + +   + + LE +   +N  TL+++I  
Sbjct: 63  IALFQEMIRSRPLPSLVDFSRFFSAIARTKQFNLVLDFCKQLELNGIAHNIYTLNIMINC 122

Query: 245 YGYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKAT 304
           +                      R      A    G++ ++    +             T
Sbjct: 123 F---------------------CRCCKTCFAYSVLGKVMKLGYEPD-------------T 148

Query: 305 EQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALEL 364
             +N++I      G + +A  L+  M  NGC+P+ +TY  +  G  +S           L
Sbjct: 149 TTFNTLIKGLFLEGKVSEAVVLVDRMVENGCQPDVVTYNSIVNGICRSG-------DTSL 201

Query: 365 GMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIK 424
            + L+   + R+    + T  +II+     G +  A +LF+E++          YN+L++
Sbjct: 202 ALDLLRKMEERNVKADVFTYSTIIDSLCRDGCIDAAISLFKEMETKGIKSSVVTYNSLVR 261

Query: 425 AYVKA-KINDPN-LLRRMILGGARPDAETYSLL 455
              KA K ND   LL+ M+     P+  T+++L
Sbjct: 262 GLCKAGKWNDGALLLKDMVSREIVPNVITFNVL 294



 Score = 52.0 bits (123), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 40/151 (26%), Positives = 68/151 (45%), Gaps = 9/151 (5%)

Query: 307 YNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGM 366
           +N ++ V+ K G + +A+ L KEM   G  PN ITY  L  G    N + E    L+L +
Sbjct: 291 FNVLLDVFVKEGKLQEANELYKEMITRGISPNIITYNTLMDGYCMQNRLSEANNMLDLMV 350

Query: 367 KLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAY 426
           +          +P + T  S+I+ +     V +   +F  + K         Y+ L++ +
Sbjct: 351 R-------NKCSPDIVTFTSLIKGYCMVKRVDDGMKVFRNISKRGLVANAVTYSILVQGF 403

Query: 427 VKA-KIN-DPNLLRRMILGGARPDAETYSLL 455
            ++ KI     L + M+  G  PD  TY +L
Sbjct: 404 CQSGKIKLAEELFQEMVSHGVLPDVMTYGIL 434


>gi|326513138|dbj|BAK06809.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 637

 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 102/433 (23%), Positives = 183/433 (42%), Gaps = 68/433 (15%)

Query: 36  LRKLQLNKRALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQGEKLFCCIPKDYQNE 95
           LR  +++K   EV E  +R + Y      Y+ LL+   K+  + Q  ++F  + + Y   
Sbjct: 197 LRSREVSK-GFEVYEE-MRRKGYMLDIFGYNMLLDALAKSGMVDQAYQVFEDMKQKYCEP 254

Query: 96  LLYNNLVIACLDKGVIKLS--LEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNI- 152
             Y   ++  +     K S  L +  +M   G +++ + +N LI    + G+ K +  + 
Sbjct: 255 DAYTYTILIRMSGRAGKASKFLSFFDEMVSKGCALNLIAYNTLI---EALGKNKMVDKVI 311

Query: 153 --LRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCI--LAT 208
             L +M      P+  T+ I + I A +  +  L +V  D+    +  +  SY +  L+ 
Sbjct: 312 FVLSKMIEGGCQPNQFTYSITLDILAKEGQLHRLNEVL-DICDRYMNKSIYSYLVKSLSK 370

Query: 209 AHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVR 268
           +  V+  + V   + +      TG+  + + +L +L      GK LE I   +  +P   
Sbjct: 371 SGHVSEAHNV---FCQMWNSYETGDRDAFVSMLEVLCN---SGKTLEAI-DLLHMMPEKG 423

Query: 269 SKS----YVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKAS 324
             +    Y +   A G++ QVS    L+ +M++         YN +IS Y + G +DKAS
Sbjct: 424 VATDVGMYNMVFSALGKLKQVSFITSLFDKMKANGIAPDLFTYNIMISSYGRVGLVDKAS 483

Query: 325 GLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETT 384
           GL ++M+ + CKP+ ITY                                          
Sbjct: 484 GLFEDMNASSCKPDVITYN----------------------------------------- 502

Query: 385 LSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKIND--PNLLRRMIL 442
            S+I    + GD+  A  LF+E+++  Y    F Y+ LI+ + K+   D   NL   MI 
Sbjct: 503 -SLINCLGKNGDLDEAHMLFKEMQEKGYGPDVFTYSILIECFGKSNKVDMACNLFLDMIA 561

Query: 443 GGARPDAETYSLL 455
            G  P+  TY++L
Sbjct: 562 EGCIPNVVTYNIL 574



 Score = 49.3 bits (116), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 66/316 (20%), Positives = 131/316 (41%), Gaps = 15/316 (4%)

Query: 33  INRLRKLQLNKRALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQ-GEKLFCCIPKD 91
           I  L K ++  + + V+  +I E   +P +  YS  L+   K   + +  E L  C    
Sbjct: 298 IEALGKNKMVDKVIFVLSKMI-EGGCQPNQFTYSITLDILAKEGQLHRLNEVLDIC--DR 354

Query: 92  YQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPN 151
           Y N+ +Y+ LV +    G +  +     +M     +     F  ++ +  + G+     +
Sbjct: 355 YMNKSIYSYLVKSLSKSGHVSEAHNVFCQMWNSYETGDRDAFVSMLEVLCNSGKTLEAID 414

Query: 152 ILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHA 211
           +L  M    VA  V  ++++         +  +  ++  MK + + P+  +Y I+ +++ 
Sbjct: 415 LLHMMPEKGVATDVGMYNMVFSALGKLKQVSFITSLFDKMKANGIAPDLFTYNIMISSYG 474

Query: 212 VARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQEL------P 265
              L   A    E +  S    +  T + LI     L K  DL+      +E+      P
Sbjct: 475 RVGLVDKASGLFEDMNASSCKPDVITYNSLI---NCLGKNGDLDEAHMLFKEMQEKGYGP 531

Query: 266 NVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASG 325
           +V +  Y + IE FG+  +V  A  L+L+M +   +     YN ++    ++G   +A  
Sbjct: 532 DVFT--YSILIECFGKSNKVDMACNLFLDMIAEGCIPNVVTYNILLDCLERHGKTAEAHK 589

Query: 326 LLKEMSMNGCKPNAIT 341
             + M   G  P++IT
Sbjct: 590 HYETMKQQGLTPDSIT 605



 Score = 48.5 bits (114), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 43/186 (23%), Positives = 73/186 (39%), Gaps = 44/186 (23%)

Query: 271 SYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEM 330
           +Y   ++A  R  +VS+  E++ EM+    +     YN ++    K+G +D+A  + ++M
Sbjct: 188 TYKCILQAHLRSREVSKGFEVYEEMRRKGYMLDIFGYNMLLDALAKSGMVDQAYQVFEDM 247

Query: 331 SMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEI 390
               C+P+A TY  L                                          I +
Sbjct: 248 KQKYCEPDAYTYTIL------------------------------------------IRM 265

Query: 391 FAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKINDPNL--LRRMILGGARPD 448
               G      + F+E+           YNTLI+A  K K+ D  +  L +MI GG +P+
Sbjct: 266 SGRAGKASKFLSFFDEMVSKGCALNLIAYNTLIEALGKNKMVDKVIFVLSKMIEGGCQPN 325

Query: 449 AETYSL 454
             TYS+
Sbjct: 326 QFTYSI 331


>gi|302774715|ref|XP_002970774.1| hypothetical protein SELMODRAFT_94312 [Selaginella moellendorffii]
 gi|300161485|gb|EFJ28100.1| hypothetical protein SELMODRAFT_94312 [Selaginella moellendorffii]
          Length = 497

 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 115/465 (24%), Positives = 185/465 (39%), Gaps = 53/465 (11%)

Query: 33  INRLRKLQLNKRALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQGEKLFC-CIPKD 91
           I+ L K     RA E+ E  ++     P  + Y+ LL+   +   + +   LF   + + 
Sbjct: 17  IDGLCKNNEPDRAQELFEH-MKSVECSPSMVTYNTLLDGLFRTGKLERAMALFQEMLDRR 75

Query: 92  YQNELLYNNLVIACLDKGVIKLSLEYMKKM--RVLGHSISYLVFNRLIILNSSPGRRKTI 149
             + + +N LV      G I+ +LE+ +KM  R   + I+Y V   LI       R    
Sbjct: 76  SHDVISFNILVTGLCRAGKIETALEFFRKMDDRCSPNVITYSV---LIDGLCKANRVSQA 132

Query: 150 PNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATA 209
             +L  MKA   +P V T+ IL+     +  +    +V  +M  +   PN V+Y  L   
Sbjct: 133 VELLESMKARGCSPDVITYTILVDGLCKESKVAAAWEVLREMLDAGCVPNLVTYNSLL-- 190

Query: 210 HAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKG-KDLERIWATVQELPNVR 268
           H + R   V++    AL + MT    +     ++ YG L  G   + R+      L ++ 
Sbjct: 191 HGLCRARRVSDAL--ALMRDMTCRGCTPN---VVTYGTLIDGLCKVGRVKDACAMLADMI 245

Query: 269 SKS-------YVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFID 321
            K        Y + I    +  QV  +  L     S         Y+SVI   C++  +D
Sbjct: 246 DKGGTPDLMIYNMLINGLCKADQVDESIALLRRAVSGGIKPDVVTYSSVIYGLCRSNRLD 305

Query: 322 KASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALEL----------------- 364
           +A  LL  +   GC P+ I Y  L  G  K+  V+E F   E+                 
Sbjct: 306 EACRLLLYVKSRGCPPDVILYSTLIDGLCKAGKVDEAFDLYEVMTGDGCDADVVTYSTLI 365

Query: 365 -GM---------KLITTKKVRSSTPWLETTL-SIIEIFAEKGDVGNAENLFEELKKANYT 413
            G+          L+  + VR  TP    T  S+I+   +   +  A  L EE++++N  
Sbjct: 366 DGLCKAGRVDEAHLLLARMVRMGTPPSTMTYNSLIKGLCDLNHLDEAIELVEEMERSNCA 425

Query: 414 KYTFVYNTLIKAYVKAKINDPNLL---RRMILGGARPDAETYSLL 455
                YN LI    + +  D   L   + MI  G  PD  TYS+L
Sbjct: 426 PSAVTYNILIHGMCRMERVDSAALDYFQEMIDNGVIPDHITYSIL 470



 Score = 68.9 bits (167), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 75/348 (21%), Positives = 139/348 (39%), Gaps = 71/348 (20%)

Query: 121 MRVLGHSISYLVFNRLI---ILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEAN 177
           MR  G   + + +N LI     N+ P R +    +   MK+ + +P + T++ L+     
Sbjct: 1   MRDHGCEPNVVTYNSLIDGLCKNNEPDRAQ---ELFEHMKSVECSPSMVTYNTLLDGLFR 57

Query: 178 DHNIEGLMKVYSDM--KRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNW 235
              +E  M ++ +M  +RS    + +S+ IL T    A     A  +   ++   + N  
Sbjct: 58  TGKLERAMALFQEMLDRRSH---DVISFNILVTGLCRAGKIETALEFFRKMDDRCSPN-- 112

Query: 236 STLDVLIILYGYLAKG-KDLERIWATVQELPNVRSK-------SYVLAIEAFGRIAQVSR 287
                 +I Y  L  G     R+   V+ L +++++       +Y + ++   + ++V+ 
Sbjct: 113 ------VITYSVLIDGLCKANRVSQAVELLESMKARGCSPDVITYTILVDGLCKESKVAA 166

Query: 288 AEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLAL 347
           A E+  EM     +     YNS++   C+   +  A  L+++M+  GC PN +TY     
Sbjct: 167 AWEVLREMLDAGCVPNLVTYNSLLHGLCRARRVSDALALMRDMTCRGCTPNVVTYG---- 222

Query: 348 GCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEEL 407
                                                 ++I+   + G V +A  +  ++
Sbjct: 223 --------------------------------------TLIDGLCKVGRVKDACAMLADM 244

Query: 408 KKANYTKYTFVYNTLIKAYVKAKINDPN--LLRRMILGGARPDAETYS 453
                T    +YN LI    KA   D +  LLRR + GG +PD  TYS
Sbjct: 245 IDKGGTPDLMIYNMLINGLCKADQVDESIALLRRAVSGGIKPDVVTYS 292


>gi|297816676|ref|XP_002876221.1| hypothetical protein ARALYDRAFT_906766 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297322059|gb|EFH52480.1| hypothetical protein ARALYDRAFT_906766 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 754

 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 72/315 (22%), Positives = 143/315 (45%), Gaps = 8/315 (2%)

Query: 98  YNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMK 157
           YN+++      G +K ++E++ +M     S + + +N LI       + +    + R + 
Sbjct: 333 YNSVISGLCKLGEVKEAVEFLDQMITRDCSPNTVTYNTLISTLCKENQVEEATELARVLT 392

Query: 158 ADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYT 217
           +  + P V TF+ L++      N    M+++ +M+    EP+E +Y +L  +        
Sbjct: 393 SKGILPDVCTFNSLIQGLCLTRNHRVAMELFEEMRSKGCEPDEFTYNMLIDSLCSKGKLD 452

Query: 218 VAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVR-SKSYVLAI 276
            A   ++ +E S    +  T + LI  +    K ++ E I+  ++     R S +Y   I
Sbjct: 453 EALNMLKQMELSGCARSVITYNTLIDGFCKANKIREAEEIFDEMEVHGVSRNSVTYNTLI 512

Query: 277 EAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCK 336
           +   +  +V  A +L  +M    Q      YNS+++ +C+ G I KA+ +++ M+ NGC+
Sbjct: 513 DGLCKSRRVEDASQLMDQMIMEGQKPDKFTYNSLLTHFCRGGDIKKAADIVQAMTSNGCE 572

Query: 337 PNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGD 396
           P+ +TY  L  G  K+  V       E+  KL+ + +++           +I+    K  
Sbjct: 573 PDIVTYGTLISGLCKAGRV-------EVASKLLRSIQMKGIALTPHAYNPVIQGLFRKRK 625

Query: 397 VGNAENLFEELKKAN 411
              A NLF E+ + N
Sbjct: 626 TTEAINLFREMLEQN 640



 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 78/397 (19%), Positives = 159/397 (40%), Gaps = 81/397 (20%)

Query: 133 FNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMK 192
           +NR++ L       K +     +M    + P VSTF++L+K     H +   + +  DM 
Sbjct: 157 YNRMLNLLVDGNNLKLVEIAHAKMSVWGIKPDVSTFNVLIKALCRAHQLRPAILMLEDMP 216

Query: 193 RSEVEPNEVSYCILATAH----AVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYL 248
              + P+E ++  +   +     +     + E  VE       G +WS + V +I++G+ 
Sbjct: 217 SYGLVPDEKTFTTIMQGYIEEGDLDGALRIREQMVEF------GCSWSNVSVNVIVHGFC 270

Query: 249 AKGKDLERIWATVQELPNVRS--------------------------------------- 269
            +G+ +E     +QE+ N                                          
Sbjct: 271 KEGR-VEDALNFIQEMSNQDGFFPDQYTFNTLVNGLCKAGHVKHAIEIMDVMLQEGYDPD 329

Query: 270 -KSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLK 328
             +Y   I    ++ +V  A E   +M +      T  YN++IS  CK   +++A+ L +
Sbjct: 330 VYTYNSVISGLCKLGEVKEAVEFLDQMITRDCSPNTVTYNTLISTLCKENQVEEATELAR 389

Query: 329 EMSMNGCKPNAITYRHL---------------------ALGC----FKSNLVEEGFKA-- 361
            ++  G  P+  T+  L                     + GC    F  N++ +   +  
Sbjct: 390 VLTSKGILPDVCTFNSLIQGLCLTRNHRVAMELFEEMRSKGCEPDEFTYNMLIDSLCSKG 449

Query: 362 -LELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYN 420
            L+  + ++   ++      + T  ++I+ F +   +  AE +F+E++    ++ +  YN
Sbjct: 450 KLDEALNMLKQMELSGCARSVITYNTLIDGFCKANKIREAEEIFDEMEVHGVSRNSVTYN 509

Query: 421 TLIKAYVKA-KINDPN-LLRRMILGGARPDAETYSLL 455
           TLI    K+ ++ D + L+ +MI+ G +PD  TY+ L
Sbjct: 510 TLIDGLCKSRRVEDASQLMDQMIMEGQKPDKFTYNSL 546



 Score = 65.9 bits (159), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 98/466 (21%), Positives = 194/466 (41%), Gaps = 73/466 (15%)

Query: 17  WMREGFPVHRGEIFHSINRLRKLQLNKRALEVME--------WVIR----------ERPY 58
           WM + F +     F+  NR+  L ++   L+++E        W I+          +   
Sbjct: 143 WMIDDFGLKPDTHFY--NRMLNLLVDGNNLKLVEIAHAKMSVWGIKPDVSTFNVLIKALC 200

Query: 59  RPKELDYSYLLEFTIKNHGISQGEKLFCCIPKDYQNELLYNNLVIACLDKGVIKLSLEYM 118
           R  +L  + L+   + ++G+   EK F  I + Y             +++G +  +L   
Sbjct: 201 RAHQLRPAILMLEDMPSYGLVPDEKTFTTIMQGY-------------IEEGDLDGALRIR 247

Query: 119 KKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMK-ADKVAPHVSTFHILMKIEAN 177
           ++M   G S S +  N ++      GR +   N +++M   D   P   TF+ L+     
Sbjct: 248 EQMVEFGCSWSNVSVNVIVHGFCKEGRVEDALNFIQEMSNQDGFFPDQYTFNTLVNGLCK 307

Query: 178 DHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGN---- 233
             +++  +++   M +   +P+  +Y   +    + +L  V E  VE L++ +T +    
Sbjct: 308 AGHVKHAIEIMDVMLQEGYDPDVYTYN--SVISGLCKLGEVKEA-VEFLDQMITRDCSPN 364

Query: 234 --NWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEEL 291
              ++TL   +     + +  +L R+  +   LP+V + + ++      R  +V  A EL
Sbjct: 365 TVTYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTRNHRV--AMEL 422

Query: 292 WLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFK 351
           + EM+S         YN +I   C  G +D+A  +LK+M ++GC  + ITY  L  G  K
Sbjct: 423 FEEMRSKGCEPDEFTYNMLIDSLCSKGKLDEALNMLKQMELSGCARSVITYNTLIDGFCK 482

Query: 352 SNLV---EEGFKALEL-GMK------------LITTKKVRSSTPWLETTL---------- 385
           +N +   EE F  +E+ G+             L  +++V  ++  ++  +          
Sbjct: 483 ANKIREAEEIFDEMEVHGVSRNSVTYNTLIDGLCKSRRVEDASQLMDQMIMEGQKPDKFT 542

Query: 386 --SIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKA 429
             S++  F   GD+  A ++ + +           Y TLI    KA
Sbjct: 543 YNSLLTHFCRGGDIKKAADIVQAMTSNGCEPDIVTYGTLISGLCKA 588



 Score = 39.7 bits (91), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 64/286 (22%), Positives = 114/286 (39%), Gaps = 21/286 (7%)

Query: 94  NELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNIL 153
           +E  YN L+ +   KG +  +L  +K+M + G + S + +N LI       + +    I 
Sbjct: 434 DEFTYNMLIDSLCSKGKLDEALNMLKQMELSGCARSVITYNTLIDGFCKANKIREAEEIF 493

Query: 154 RQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVA 213
            +M+   V+ +  T++ L+        +E   ++   M     +P++ +Y  L T     
Sbjct: 494 DEMEVHGVSRNSVTYNTLIDGLCKSRRVEDASQLMDQMIMEGQKPDKFTYNSLLTHFCRG 553

Query: 214 RLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKG-KDLERIWATVQELPNVRSKSY 272
                A   V+A    MT N     +  I+ YG L  G     R+    + L +++ K  
Sbjct: 554 GDIKKAADIVQA----MTSNGC---EPDIVTYGTLISGLCKAGRVEVASKLLRSIQMKGI 606

Query: 273 VLAIEAFGRIAQ-------VSRAEELWLEMQSVKQLKATEQ---YNSVISVYCKNGF-ID 321
            L   A+  + Q        + A  L+ EM  ++Q +A      Y  V    C  G  I 
Sbjct: 607 ALTPHAYNPVIQGLFRKRKTTEAINLFREM--LEQNEAAPDAVSYRIVFRGLCNGGGPIR 664

Query: 322 KASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMK 367
           +A   L E+   G  P   +   LA G    ++ E   K + + M+
Sbjct: 665 EAVDFLVELLEKGFVPEFSSLYMLAEGLLTLSMEETLVKLVNMVMQ 710


>gi|30794106|gb|AAP40495.1| unknown protein [Arabidopsis thaliana]
          Length = 974

 Score = 80.9 bits (198), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 90/381 (23%), Positives = 163/381 (42%), Gaps = 20/381 (5%)

Query: 60  PKELDYSYLLEFTIKNHGISQGEKLFCCIPKDYQNELL----YNNLVIACLDKGVIKLSL 115
           P+   Y+ L+E   +   + QG +L   + K  +N ++    Y  +V      G +  + 
Sbjct: 380 PQAQAYASLIEGYCREKNVRQGYELLVEMKK--RNIVISPYTYGTVVKGMCSSGDLDGAY 437

Query: 116 EYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIE 175
             +K+M   G   + +++  LI       R      +L++MK   +AP +  ++ L+   
Sbjct: 438 NIVKEMIASGCRPNVVIYTTLIKTFLQNSRFGDAMRVLKEMKEQGIAPDIFCYNSLIIGL 497

Query: 176 ANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNW 235
           +    ++       +M  + ++PN  +Y    + +  A  +  A+ YV+ + +     N 
Sbjct: 498 SKAKRMDEARSFLVEMVENGLKPNAFTYGAFISGYIEASEFASADKYVKEMRECGVLPNK 557

Query: 236 STLDVLIILYGYLAKGKDLERIWA---TVQELPNVRSKSYVLAIEAFGRIAQVSRAEELW 292
                LI    Y  K K +E   A    V +     +K+Y + +    +  +V  AEE++
Sbjct: 558 VLCTGLI--NEYCKKEKVIEACSAYRSMVDQGILGDAKTYTVLMNGLFKNDKVDDAEEIF 615

Query: 293 LEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKS 352
            EM+          Y  +I+ + K G + KAS +  EM   G  PN I Y  L  G  +S
Sbjct: 616 REMRGKGIAPDVFSYGVLINGFSKLGNMQKASSIFDEMVEEGLTPNVIIYNMLLGGFCRS 675

Query: 353 NLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANY 412
             +E   KA E    L+    V+   P   T  +II+ + + GD+  A  LF+E+K    
Sbjct: 676 GEIE---KAKE----LLDEMSVKGLHPNAVTYCTIIDGYCKSGDLAEAFRLFDEMKLKGL 728

Query: 413 TKYTFVYNTLIKAYVKAKIND 433
              +FVY TL+      ++ND
Sbjct: 729 VPDSFVYTTLVDGC--CRLND 747



 Score = 68.9 bits (167), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 86/376 (22%), Positives = 160/376 (42%), Gaps = 29/376 (7%)

Query: 94  NELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNIL 153
           N ++Y  L+   L       ++  +K+M+  G +     +N LII  S   R     + L
Sbjct: 451 NVVIYTTLIKTFLQNSRFGDAMRVLKEMKEQGIAPDIFCYNSLIIGLSKAKRMDEARSFL 510

Query: 154 RQMKADKVAPHVSTFHILMK--IEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHA 211
            +M  + + P+  T+   +   IEA++       K   +M+   V PN+V    L   + 
Sbjct: 511 VEMVENGLKPNAFTYGAFISGYIEASE--FASADKYVKEMRECGVLPNKVLCTGLINEYC 568

Query: 212 VA-RLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGK--DLERIWATVQE---LP 265
              ++      Y   +++ + G+  +     +++ G     K  D E I+  ++     P
Sbjct: 569 KKEKVIEACSAYRSMVDQGILGDAKT---YTVLMNGLFKNDKVDDAEEIFREMRGKGIAP 625

Query: 266 NVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASG 325
           +V S  Y + I  F ++  + +A  ++ EM           YN ++  +C++G I+KA  
Sbjct: 626 DVFS--YGVLINGFSKLGNMQKASSIFDEMVEEGLTPNVIIYNMLLGGFCRSGEIEKAKE 683

Query: 326 LLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTL 385
           LL EMS+ G  PNA+TY  +  G  KS  + E F       +L    K++   P      
Sbjct: 684 LLDEMSVKGLHPNAVTYCTIIDGYCKSGDLAEAF-------RLFDEMKLKGLVPDSFVYT 736

Query: 386 SIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKIND--PNLLRRMILG 443
           ++++      DV  A  +F   KK   +  T  +N LI    K    +    +L R++ G
Sbjct: 737 TLVDGCCRLNDVERAITIFGTNKKGCASS-TAPFNALINWVFKFGKTELKTEVLNRLMDG 795

Query: 444 G----ARPDAETYSLL 455
                 +P+  TY+++
Sbjct: 796 SFDRFGKPNDVTYNIM 811



 Score = 49.7 bits (117), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 58/225 (25%), Positives = 96/225 (42%), Gaps = 16/225 (7%)

Query: 237 TLDVLIILYGYLAKGKDLERIWATVQELPNV----RSKSYVLAIEAFGRIAQVSRAEELW 292
           T DVLI     L K K LE   + + E+ ++     + +Y L I+   +      A+ L 
Sbjct: 279 TYDVLI---DGLCKIKRLEDAKSLLVEMDSLGVSLDNHTYSLLIDGLLKGRNADAAKGLV 335

Query: 293 LEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKS 352
            EM S         Y+  I V  K G ++KA  L   M  +G  P A  Y  L  G  + 
Sbjct: 336 HEMVSHGINIKPYMYDCCICVMSKEGVMEKAKALFDGMIASGLIPQAQAYASLIEGYCRE 395

Query: 353 NLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANY 412
             V +G+       +L+   K R+      T  ++++     GD+  A N+ +E+  +  
Sbjct: 396 KNVRQGY-------ELLVEMKKRNIVISPYTYGTVVKGMCSSGDLDGAYNIVKEMIASGC 448

Query: 413 TKYTFVYNTLIKAYVK-AKINDP-NLLRRMILGGARPDAETYSLL 455
                +Y TLIK +++ ++  D   +L+ M   G  PD   Y+ L
Sbjct: 449 RPNVVIYTTLIKTFLQNSRFGDAMRVLKEMKEQGIAPDIFCYNSL 493



 Score = 40.0 bits (92), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 67/339 (19%), Positives = 138/339 (40%), Gaps = 47/339 (13%)

Query: 116 EYMKKMRVLGHSISYLVFNRLIILN--SSPGRRKTIPNILRQMKADKVAPHVSTFHILMK 173
           E  ++MR  G  I+  VF+  +++N  S  G  +   +I  +M  + + P+V  +++L+ 
Sbjct: 613 EIFREMR--GKGIAPDVFSYGVLINGFSKLGNMQKASSIFDEMVEEGLTPNVIIYNMLLG 670

Query: 174 IEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVA-------RLYT-------VA 219
                  IE   ++  +M    + PN V+YC +   +  +       RL+        V 
Sbjct: 671 GFCRSGEIEKAKELLDEMSVKGLHPNAVTYCTIIDGYCKSGDLAEAFRLFDEMKLKGLVP 730

Query: 220 ETYV-----------EALEKSMT--GNN----------WSTLDVLIILYGYLA-KGKDLE 255
           +++V             +E+++T  G N          ++ L   +  +G    K + L 
Sbjct: 731 DSFVYTTLVDGCCRLNDVERAITIFGTNKKGCASSTAPFNALINWVFKFGKTELKTEVLN 790

Query: 256 RIW-ATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVY 314
           R+   +          +Y + I+   +   +  A+EL+ +MQ+   +     Y S+++ Y
Sbjct: 791 RLMDGSFDRFGKPNDVTYNIMIDYLCKEGNLEAAKELFHQMQNANLMPTVITYTSLLNGY 850

Query: 315 CKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKV 374
            K G   +   +  E    G +P+ I Y  +     K  +     KAL L  ++     V
Sbjct: 851 DKMGRRAEMFPVFDEAIAAGIEPDHIMYSVIINAFLKEGMTT---KALVLVDQMFAKNAV 907

Query: 375 RSSTPW-LETTLSIIEIFAEKGDVGNAENLFEELKKANY 412
                  + T  +++  FA+ G++  AE + E + +  Y
Sbjct: 908 DDGCKLSISTCRALLSGFAKVGEMEVAEKVMENMVRLQY 946


>gi|223948189|gb|ACN28178.1| unknown [Zea mays]
 gi|413935735|gb|AFW70286.1| hypothetical protein ZEAMMB73_980179 [Zea mays]
          Length = 597

 Score = 80.9 bits (198), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 68/305 (22%), Positives = 128/305 (41%), Gaps = 18/305 (5%)

Query: 160 KVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVA 219
           +  P   T+ +L++       +     V S+M+R+ + P    Y         AR    A
Sbjct: 202 RCVPTEDTYALLLRAYCGSGQLHRAEGVISEMQRNGIPPTATVYNAYLDGLLKARCSEKA 261

Query: 220 ETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQEL---PNVRSKSYVLAI 276
               + ++K     N  T  ++I +YG   +     R++  ++ +   PN+   +Y   +
Sbjct: 262 VEVYQRMKKERCRTNTETYTLMINVYGKANQPMSSLRVFREMKSVGCKPNI--CTYTALV 319

Query: 277 EAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCK 336
            AF R     +AEE++ EMQ          YN+++  Y + G    AS +   M   GC+
Sbjct: 320 NAFAREGLCEKAEEVFEEMQQAGHEPDVYAYNALMEAYSRAGLPQGASEIFSLMEHMGCE 379

Query: 337 PNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGD 396
           P+  +Y  L     ++ L +E   A +         K +   P +++ + ++   A  G+
Sbjct: 380 PDRASYNILVDAFGRAGLHQEAEAAFQ-------ELKQQGMRPTMKSHMLLLSAHARSGN 432

Query: 397 VGNAENLFEELKKANYTKYTFVYNTLIKAYVKA-KIND-PNLLRRMILG----GARPDAE 450
           V   E +  +L K+     TF  N ++ AY +A +++D   L   M  G       PD  
Sbjct: 433 VARCEEVMAQLHKSGLRPDTFALNAMLNAYGRAGRLDDMERLFAAMERGDGAIAGAPDTS 492

Query: 451 TYSLL 455
           TY+++
Sbjct: 493 TYNVM 497



 Score = 75.5 bits (184), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 86/442 (19%), Positives = 184/442 (41%), Gaps = 33/442 (7%)

Query: 33  INRLRKLQLNKR---ALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQGEKLFC--- 86
           +N   +L+LN++    + V EWV+R   +RP  + Y+ L++   +   +S+ E  +    
Sbjct: 140 VNVAVQLRLNRQWEPIITVCEWVLRRSSFRPDIICYNLLIDAYGQKRQLSEAEAAYMALL 199

Query: 87  ---CIPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLI--ILNS 141
              C+P     E  Y  L+ A    G +  +   + +M+  G   +  V+N  +  +L +
Sbjct: 200 EARCVP----TEDTYALLLRAYCGSGQLHRAEGVISEMQRNGIPPTATVYNAYLDGLLKA 255

Query: 142 SPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEV 201
               +     + ++MK ++   +  T+ +++ +    +     ++V+ +MK    +PN  
Sbjct: 256 RCSEKAV--EVYQRMKKERCRTNTETYTLMINVYGKANQPMSSLRVFREMKSVGCKPNIC 313

Query: 202 SYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATV 261
           +Y  L  A A   L   AE   E ++++    +    + L+  Y      +    I++ +
Sbjct: 314 TYTALVNAFAREGLCEKAEEVFEEMQQAGHEPDVYAYNALMEAYSRAGLPQGASEIFSLM 373

Query: 262 QEL---PNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNG 318
           + +   P+    SY + ++AFGR      AE  + E++        + +  ++S + ++G
Sbjct: 374 EHMGCEPD--RASYNILVDAFGRAGLHQEAEAAFQELKQQGMRPTMKSHMLLLSAHARSG 431

Query: 319 FIDKASGLLKEMSMNGCKPNAITYRHL--ALG-CFKSNLVEEGFKALELGMKLITTKKVR 375
            + +   ++ ++  +G +P+      +  A G   + + +E  F A+E G   I      
Sbjct: 432 NVARCEEVMAQLHKSGLRPDTFALNAMLNAYGRAGRLDDMERLFAAMERGDGAI------ 485

Query: 376 SSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKINDPN 435
           +  P   T   ++  +   G +   E  F  L           + + I AY + K     
Sbjct: 486 AGAPDTSTYNVMVNAYGRAGYLDRMEAAFRSLAARGLAADVVTWTSRIGAYARKKEYGQC 545

Query: 436 L--LRRMILGGARPDAETYSLL 455
           L     M+  G  PDA T  +L
Sbjct: 546 LRVFEEMVDAGCYPDAGTAKVL 567



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 79/366 (21%), Positives = 150/366 (40%), Gaps = 19/366 (5%)

Query: 3   RLPRGEPVGSAFQSWMREGFPVHRGEIFHSINRLRKLQLNKRALEVMEWVIRERPYRPKE 62
           +L R E V S  Q   R G P         ++ L K + +++A+EV + + +ER  R   
Sbjct: 222 QLHRAEGVISEMQ---RNGIPPTATVYNAYLDGLLKARCSEKAVEVYQRMKKER-CRTNT 277

Query: 63  LDYSYLLEFTIKNHGISQGEKLF------CCIPKDYQNELLYNNLVIACLDKGVIKLSLE 116
             Y+ ++    K +      ++F       C P    N   Y  LV A   +G+ + + E
Sbjct: 278 ETYTLMINVYGKANQPMSSLRVFREMKSVGCKP----NICTYTALVNAFAREGLCEKAEE 333

Query: 117 YMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEA 176
             ++M+  GH      +N L+   S  G  +    I   M+     P  ++++IL+    
Sbjct: 334 VFEEMQQAGHEPDVYAYNALMEAYSRAGLPQGASEIFSLMEHMGCEPDRASYNILVDAFG 393

Query: 177 NDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWS 236
                +     + ++K+  + P   S+ +L +AHA +      E  +  L KS    +  
Sbjct: 394 RAGLHQEAEAAFQELKQQGMRPTMKSHMLLLSAHARSGNVARCEEVMAQLHKSGLRPDTF 453

Query: 237 TLDVLIILYGYLAKGKDLERIWATVQELPNV-----RSKSYVLAIEAFGRIAQVSRAEEL 291
            L+ ++  YG   +  D+ER++A ++           + +Y + + A+GR   + R E  
Sbjct: 454 ALNAMLNAYGRAGRLDDMERLFAAMERGDGAIAGAPDTSTYNVMVNAYGRAGYLDRMEAA 513

Query: 292 WLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFK 351
           +  + +         + S I  Y +     +   + +EM   GC P+A T + L   C  
Sbjct: 514 FRSLAARGLAADVVTWTSRIGAYARKKEYGQCLRVFEEMVDAGCYPDAGTAKVLLAACSD 573

Query: 352 SNLVEE 357
              VE+
Sbjct: 574 ERQVEQ 579


>gi|62320494|dbj|BAD95034.1| hypothetical protein [Arabidopsis thaliana]
          Length = 602

 Score = 80.9 bits (198), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 91/419 (21%), Positives = 184/419 (43%), Gaps = 18/419 (4%)

Query: 44  RALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQGEKLFCCI-PKDYQNELLYNNLV 102
           +A+ VME  I E+  +P    Y+ L+    K + I    ++   +  KD+  + +  N++
Sbjct: 142 KAVRVME--ILEKFGQPDVFAYNALINGFCKMNRIDDATRVLDRMRSKDFSPDTVTYNIM 199

Query: 103 IACL-DKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKV 161
           I  L  +G + L+L+ + ++       + + +  LI      G       ++ +M +  +
Sbjct: 200 IGSLCSRGKLDLALKVLNQLLSDNCQPTVITYTILIEATMLEGGVDEALKLMDEMLSRGL 259

Query: 162 APHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAET 221
            P + T++ +++    +  ++   ++  +++    EP+ +SY IL  A      +   E 
Sbjct: 260 KPDMFTYNTIIRGMCKEGMVDRAFEMVRNLELKGSEPDVISYNILLRALLNQGKWEEGEK 319

Query: 222 YVEALEKSMTGNNWSTLDVLIILY---GYLAKGKDLERIWATVQELPNVRSKSYVLAIEA 278
            +  +       N  T  +LI      G + +  +L ++       P+  + SY   I A
Sbjct: 320 LMTKMFSEKCDPNVVTYSILITTLCRDGKIEEAMNLLKLMKEKGLTPD--AYSYDPLIAA 377

Query: 279 FGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPN 338
           F R  ++  A E    M S   L     YN+V++  CKNG  D+A  +  ++   GC PN
Sbjct: 378 FCREGRLDVAIEFLETMISDGCLPDIVNYNTVLATLCKNGKADQALEIFGKLGEVGCSPN 437

Query: 339 AITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVG 398
           + +Y  +    + S    +  +AL + +++++        P   T  S+I     +G V 
Sbjct: 438 SSSYNTMFSALWSSG---DKIRALHMILEMMSN----GIDPDEITYNSMISCLCREGMVD 490

Query: 399 NAENLFEELKKANYTKYTFVYNTLIKAYVKA-KINDP-NLLRRMILGGARPDAETYSLL 455
            A  L  +++   +      YN ++  + KA +I D  N+L  M+  G RP+  TY++L
Sbjct: 491 EAFELLVDMRSCEFHPSVVTYNIVLLGFCKAHRIEDAINVLESMVGNGCRPNETTYTVL 549


>gi|147779268|emb|CAN70089.1| hypothetical protein VITISV_038171 [Vitis vinifera]
          Length = 838

 Score = 80.9 bits (198), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 99/446 (22%), Positives = 182/446 (40%), Gaps = 37/446 (8%)

Query: 33  INRLRKLQLNKR---ALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQGEKLFC--- 86
           IN   +L+LNK+    + +  W++    + P  + Y+ L++   +     + E  +    
Sbjct: 66  INVAVQLRLNKQWDAIVLICGWILYRSSFHPDVICYNLLIDAYGQKSLYKKAESTYLELL 125

Query: 87  ---CIPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSP 143
              C+P     E  Y  L+ A    G+++ +     +MR  G   S +V+N  I      
Sbjct: 126 EARCVP----TEDTYALLLKAYCTSGLLEKAEAVFAEMRKYGFPPSAVVYNAYIDGLMKG 181

Query: 144 GRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSY 203
           G  +    I  +MK D+  P  +T+ +L+ +          +KV+ +M+  + +PN  ++
Sbjct: 182 GDTQKAVEIFERMKRDRCQPSTATYTMLINLYGKASKSYMALKVFHEMRSQKCKPNICTF 241

Query: 204 CILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQE 263
             L  A A   L   AE   E L+++    +    + L+  Y           I++ +Q 
Sbjct: 242 TALVNAFAREGLCEKAEEIFEQLQEAGLEPDVYAYNALMEAYSRAGFPYGAAEIFSLMQH 301

Query: 264 LPNVRSK-SYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDK 322
           +     + SY + ++A+GR      A+ ++  M+ +      + +  ++S Y + G + K
Sbjct: 302 MGCEPDRASYNIMVDAYGRAGLHEDAQAVFEVMKRLGITPTMKSHMLLLSAYSRAGKVAK 361

Query: 323 ASGLLKEMSMNGCKPNAITYRHLA-----LGCFKSNLVEEGFKALELGMKLITTKKVRSS 377
              ++ +M  +G KP+      +      LG F+   +EE   A+E G            
Sbjct: 362 CEEIVNQMHKSGIKPDTFVLNSMLNLYGRLGQFEK--MEEVLTAMEKG-----------P 408

Query: 378 TPWLETTLSI-IEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKINDPNL 436
            P   +T +I I I+   G     E LF  L   N       + + I AY + K  +  L
Sbjct: 409 YPADISTYNILINIYGRAGFFARMEELFRSLPARNLIPDVVTWTSRIGAYSRRKQYNRCL 468

Query: 437 --LRRMILGGARPDAETYS--LLKLA 458
                MI  G  PD  T    LLK+A
Sbjct: 469 EVFEEMIDAGCYPDGGTAKNVLLKVA 494


>gi|449454139|ref|XP_004144813.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09820-like [Cucumis sativus]
 gi|449524964|ref|XP_004169491.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09820-like [Cucumis sativus]
          Length = 611

 Score = 80.9 bits (198), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 93/376 (24%), Positives = 165/376 (43%), Gaps = 27/376 (7%)

Query: 94  NELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTI---P 150
           N + +N ++      G +  + + +  M+V G   + + +N LI      GR   +    
Sbjct: 229 NLITFNTVINGLCKVGKLNKAGDVVDDMKVWGFWPNVVTYNTLIDGYCKMGRVGKMYKAD 288

Query: 151 NILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAH 210
            IL++M  +KV+P+  TF++L+     D N+   +KV+ +M+   ++P  V+Y  L    
Sbjct: 289 AILKEMVENKVSPNSVTFNVLIDGFCKDENLSAALKVFEEMQSQGLKPTVVTYNSLVNGL 348

Query: 211 AVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQEL------ 264
                   A+  ++ +  S    N  T + LI   GY  K K LE        +      
Sbjct: 349 CNEGKLNEAKVLLDEMLSSNLKPNVITYNALI--NGY-CKKKLLEEARELFDNIGKQGLT 405

Query: 265 PNVRSKSYVL-AIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKA 323
           PNV + + +L     FG++ +    +++ LE      L     YN +I  +C+ G +++ 
Sbjct: 406 PNVITFNTLLHGYCKFGKMEEAFLLQKVMLEKGF---LPNASTYNCLIVGFCREGKMEEV 462

Query: 324 SGLLKEMSMNGCKPNAITYRHL-ALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLE 382
             LL EM   G K + +TY  L +  C K        K  +   +LI     +   P   
Sbjct: 463 KNLLNEMQCRGVKADTVTYNILISAWCEK--------KEPKKAARLIDEMLDKGLKPSHL 514

Query: 383 TTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYV-KAKINDPN-LLRRM 440
           T   ++  +  +G++  A NL ++++K         YN LI+ Y  K K+ D N LL  M
Sbjct: 515 TYNILLNGYCMEGNLRAALNLRKQMEKEGRWANVVTYNVLIQGYCRKGKLEDANGLLNEM 574

Query: 441 ILGGARPDAETYSLLK 456
           +  G  P+  TY ++K
Sbjct: 575 LEKGLIPNRTTYEIIK 590



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 96/413 (23%), Positives = 164/413 (39%), Gaps = 73/413 (17%)

Query: 76  HGISQGEKLFCCIPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNR 135
           H +S     FC       N ++ + LV+A ++     L LE  K+     + +S L  N 
Sbjct: 147 HSLSVCSGQFC------ANSIIADMLVLAYVENSKTVLGLEAFKRAGDYRYKLSVLSCNP 200

Query: 136 LIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSE 195
           L+           +  + ++M   K++P++ TF+ ++        +     V  DMK   
Sbjct: 201 LLSALVKENEFGGVEFVYKEMIRRKISPNLITFNTVINGLCKVGKLNKAGDVVDDMKVWG 260

Query: 196 VEPNEVSYCILATAHAVARLYTVAETY-VEALEKSMTGNNWSTLDVLIILYGYLAKGKDL 254
             PN V+Y  L   +   ++  V + Y  +A+ K M  N  S                  
Sbjct: 261 FWPNVVTYNTLIDGYC--KMGRVGKMYKADAILKEMVENKVS------------------ 300

Query: 255 ERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVY 314
                     PN  S ++ + I+ F +   +S A +++ EMQS         YNS+++  
Sbjct: 301 ----------PN--SVTFNVLIDGFCKDENLSAALKVFEEMQSQGLKPTVVTYNSLVNGL 348

Query: 315 CKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALE-LGMKLITTKK 373
           C  G +++A  LL EM  +  KPN ITY  L  G  K  L+EE  +  + +G + +T   
Sbjct: 349 CNEGKLNEAKVLLDEMLSSNLKPNVITYNALINGYCKKKLLEEARELFDNIGKQGLTPNV 408

Query: 374 VRSST---------------------------PWLETTLSIIEIFAEKGDVGNAENLFEE 406
           +  +T                           P   T   +I  F  +G +   +NL  E
Sbjct: 409 ITFNTLLHGYCKFGKMEEAFLLQKVMLEKGFLPNASTYNCLIVGFCREGKMEEVKNLLNE 468

Query: 407 LKKANYTKYTFVYNTLIKAYVKAKINDPN----LLRRMILGGARPDAETYSLL 455
           ++       T  YN LI A+ + K  +P     L+  M+  G +P   TY++L
Sbjct: 469 MQCRGVKADTVTYNILISAWCEKK--EPKKAARLIDEMLDKGLKPSHLTYNIL 519


>gi|449432854|ref|XP_004134213.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g06920-like [Cucumis sativus]
          Length = 904

 Score = 80.9 bits (198), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 89/387 (22%), Positives = 164/387 (42%), Gaps = 62/387 (16%)

Query: 87  CIPKDYQNELLYNNLVIACLD-KGVIKLSLEYMKKMRVLGHSISYL-VFNRLIILNSSPG 144
           CIP      ++  N +++CL  KG +  +L+  ++M+    +I  L  +N +I +    G
Sbjct: 371 CIPS-----VVSYNCILSCLGRKGQVDEALKKFEEMK--KDAIPNLSTYNIMIDMLCKAG 423

Query: 145 RRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYC 204
           + +T   +   MK   + P+V T +I++        ++    ++  +      P+ V+YC
Sbjct: 424 KLETALVVRDAMKDAGLFPNVITVNIMVDRLCKAQRLDDACSIFEGLDHKTCRPDAVTYC 483

Query: 205 ILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDV------------------------ 240
            L     + R   V E Y +  E+ +  N      V                        
Sbjct: 484 SLI--EGLGRHGRVDEAY-KLYEQMLDANQIPNAVVYTSLIRNFFKCGRKEDGHKIYNEM 540

Query: 241 --------LIILYGYLA---KGKDLERIWATVQELPNV----RSKSYVLAIEAFGRIAQV 285
                   L++L  Y+    K  ++E+  A  QE+ N+     ++SY + I    +    
Sbjct: 541 LRLGCSPDLLLLNTYMDCVFKAGEIEKGRALFQEIKNLGFIPDARSYTILIHGLVKAGFA 600

Query: 286 SRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHL 345
             A EL+  M+    +  T  YN+VI  +CK+G ++KA  LL+EM   G +P  +TY  +
Sbjct: 601 HEAYELFYTMKEQGCVLDTRAYNTVIDGFCKSGKVNKAYQLLEEMKTKGHEPTVVTYGSV 660

Query: 346 ALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTL--SIIEIFAEKGDVGNAENL 403
             G  K + ++E +   E         + +S    L   +  S+I+ F + G +  A  +
Sbjct: 661 IDGLAKIDRLDEAYMLFE---------EAKSKGIELNVVIYSSLIDGFGKVGRIDEAYLI 711

Query: 404 FEELKKANYTKYTFVYNTLIKAYVKAK 430
            EEL +   T   + +N L+ A VKA+
Sbjct: 712 MEELMQKGLTPNVYTWNCLLDALVKAE 738



 Score = 77.4 bits (189), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 81/356 (22%), Positives = 153/356 (42%), Gaps = 15/356 (4%)

Query: 98  YNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMK 157
           Y NL+ A          L   ++M+ LG++++  +F  LI + +  GR     ++L +MK
Sbjct: 203 YTNLIGALSTSRDSDCMLTLFQQMQELGYAVNVHLFTTLIRVFAREGRVDAALSLLDEMK 262

Query: 158 ADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYT 217
           ++ + P V  +++ +        ++   K + +MK + +  ++V+Y  +      A    
Sbjct: 263 SNSLEPDVVLYNVCIDCFGKAGKVDMAWKFFHEMKANGLVLDDVTYTSMIGVLCKADRLN 322

Query: 218 VAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQE---LPNVRSKSYVL 274
            A    E ++++         + +I+ YG   K +D   +    +    +P+V S + +L
Sbjct: 323 EAVELFEHMDQNKQVPCAYAYNTMIMGYGMAGKFEDAYSLLERQRRKGCIPSVVSYNCIL 382

Query: 275 AIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNG 334
           +    GR  QV  A + + EM+    +     YN +I + CK G ++ A  +   M   G
Sbjct: 383 S--CLGRKGQVDEALKKFEEMKK-DAIPNLSTYNIMIDMLCKAGKLETALVVRDAMKDAG 439

Query: 335 CKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEK 394
             PN IT   +     K+  +++     E G+   T +      P   T  S+IE     
Sbjct: 440 LFPNVITVNIMVDRLCKAQRLDDACSIFE-GLDHKTCR------PDAVTYCSLIEGLGRH 492

Query: 395 GDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKA--KINDPNLLRRMILGGARPD 448
           G V  A  L+E++  AN      VY +LI+ + K   K +   +   M+  G  PD
Sbjct: 493 GRVDEAYKLYEQMLDANQIPNAVVYTSLIRNFFKCGRKEDGHKIYNEMLRLGCSPD 548



 Score = 62.0 bits (149), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 72/352 (20%), Positives = 140/352 (39%), Gaps = 54/352 (15%)

Query: 111 IKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHI 170
           ++ +  +++ MR L    ++  +  LI   S+      +  + +QM+    A +V  F  
Sbjct: 181 LREAFTFIQTMRKLKFRPAFSAYTNLIGALSTSRDSDCMLTLFQQMQELGYAVNVHLFTT 240

Query: 171 LMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSM 230
           L+++ A +  ++  + +  +MK + +EP+ V Y                           
Sbjct: 241 LIRVFAREGRVDAALSLLDEMKSNSLEPDVVLY--------------------------- 273

Query: 231 TGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPN----VRSKSYVLAIEAFGRIAQVS 286
                   +V I  +G   K   ++  W    E+      +   +Y   I    +  +++
Sbjct: 274 --------NVCIDCFG---KAGKVDMAWKFFHEMKANGLVLDDVTYTSMIGVLCKADRLN 322

Query: 287 RAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLA 346
            A EL+  M   KQ+     YN++I  Y   G  + A  LL+     GC P+ ++Y  + 
Sbjct: 323 EAVELFEHMDQNKQVPCAYAYNTMIMGYGMAGKFEDAYSLLERQRRKGCIPSVVSYNCI- 381

Query: 347 LGCF-KSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFE 405
           L C  +   V+E  K  E  MK       + + P L T   +I++  + G +  A  + +
Sbjct: 382 LSCLGRKGQVDEALKKFE-EMK-------KDAIPNLSTYNIMIDMLCKAGKLETALVVRD 433

Query: 406 ELKKANYTKYTFVYNTLIKAYVKA-KINDP-NLLRRMILGGARPDAETYSLL 455
            +K A         N ++    KA +++D  ++   +     RPDA TY  L
Sbjct: 434 AMKDAGLFPNVITVNIMVDRLCKAQRLDDACSIFEGLDHKTCRPDAVTYCSL 485



 Score = 56.6 bits (135), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 63/303 (20%), Positives = 120/303 (39%), Gaps = 23/303 (7%)

Query: 133 FNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMK 192
           +N L+++ +   +   +  IL +M      P  +T   ++        +         M+
Sbjct: 133 YNSLLMVMARTRKFNCLEQILEEMSIAGFGPSNNTCIEIVLSFIKSRKLREAFTFIQTMR 192

Query: 193 RSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGK 252
           + +  P   +Y  L  A + +R      T  + +++     N      LI ++       
Sbjct: 193 KLKFRPAFSAYTNLIGALSTSRDSDCMLTLFQQMQELGYAVNVHLFTTLIRVFAREG--- 249

Query: 253 DLERIWATVQELPNVRSKS-------YVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATE 305
              R+ A +  L  ++S S       Y + I+ FG+  +V  A + + EM++   +    
Sbjct: 250 ---RVDAALSLLDEMKSNSLEPDVVLYNVCIDCFGKAGKVDMAWKFFHEMKANGLVLDDV 306

Query: 306 QYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELG 365
            Y S+I V CK   +++A  L + M  N   P A  Y  + +G   +   E+ +  LE  
Sbjct: 307 TYTSMIGVLCKADRLNEAVELFEHMDQNKQVPCAYAYNTMIMGYGMAGKFEDAYSLLE-- 364

Query: 366 MKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKK---ANYTKYTFVYNTL 422
                 ++ +   P + +   I+     KG V  A   FEE+KK    N + Y  + + L
Sbjct: 365 -----RQRRKGCIPSVVSYNCILSCLGRKGQVDEALKKFEEMKKDAIPNLSTYNIMIDML 419

Query: 423 IKA 425
            KA
Sbjct: 420 CKA 422



 Score = 46.6 bits (109), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 51/219 (23%), Positives = 97/219 (44%), Gaps = 12/219 (5%)

Query: 242 IILYGYLAKGKDLE--RIWATVQELPNV-RSKSYVLAIEAFGRIAQVSRAEELWLEMQSV 298
           I+++G +  G   E   ++ T++E   V  +++Y   I+ F +  +V++A +L  EM++ 
Sbjct: 589 ILIHGLVKAGFAHEAYELFYTMKEQGCVLDTRAYNTVIDGFCKSGKVNKAYQLLEEMKTK 648

Query: 299 KQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEG 358
                   Y SVI    K   +D+A  L +E    G + N + Y  L  G  K   ++E 
Sbjct: 649 GHEPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKGIELNVVIYSSLIDGFGKVGRIDEA 708

Query: 359 FKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFV 418
           +  +E  M+       +  TP + T   +++   +  ++  A   F+ +K    T     
Sbjct: 709 YLIMEELMQ-------KGLTPNVYTWNCLLDALVKAEEISEALVCFQSMKDLKCTPNYIT 761

Query: 419 YNTLIKAYVKA-KINDPNLL-RRMILGGARPDAETYSLL 455
           Y+ LI    K  K N   +  + M   G +P+  TY+ +
Sbjct: 762 YSILIHGLCKIRKFNKAFVFWQEMQKQGFKPNVFTYTTM 800



 Score = 43.9 bits (102), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 98/430 (22%), Positives = 162/430 (37%), Gaps = 71/430 (16%)

Query: 9   PVGSAFQSWMREGFPVHRGEIFHSI-NRLRKLQLNKRALEVMEWVIRERPYRPKELDYSY 67
           P    + S +R  F   R E  H I N + +L  +   L +  ++  +  ++  E++   
Sbjct: 512 PNAVVYTSLIRNFFKCGRKEDGHKIYNEMLRLGCSPDLLLLNTYM--DCVFKAGEIEKGR 569

Query: 68  LLEFTIKNHGISQGEKLFCCIPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHS 127
            L   IKN G          IP      +L + LV A    G    + E    M+  G  
Sbjct: 570 ALFQEIKNLGF---------IPDARSYTILIHGLVKA----GFAHEAYELFYTMKEQGCV 616

Query: 128 ISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKV 187
           +    +N +I      G+      +L +MK     P V T+  ++   A    ++    +
Sbjct: 617 LDTRAYNTVIDGFCKSGKVNKAYQLLEEMKTKGHEPTVVTYGSVIDGLAKIDRLDEAYML 676

Query: 188 YSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYV---EALEKSMTGNNWSTLDVLIIL 244
           + + K   +E N V Y  L       ++  + E Y+   E ++K +T             
Sbjct: 677 FEEAKSKGIELNVVIYSSLI--DGFGKVGRIDEAYLIMEELMQKGLT------------- 721

Query: 245 YGYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKAT 304
                               PNV + + +L  +A  +  ++S A    +  QS+K LK T
Sbjct: 722 --------------------PNVYTWNCLL--DALVKAEEISEA---LVCFQSMKDLKCT 756

Query: 305 EQYNS---VISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKS-NLVEEGFK 360
             Y +   +I   CK    +KA    +EM   G KPN  TY  +  G  K+ N+VE    
Sbjct: 757 PNYITYSILIHGLCKIRKFNKAFVFWQEMQKQGFKPNVFTYTTMISGLAKAGNIVE---- 812

Query: 361 ALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYN 420
           A  L  K      V  S  +     +IIE  +      +A  LFEE +    + YT    
Sbjct: 813 ADTLFEKFKEKGGVADSAIY----NAIIEGLSNANRASDAYRLFEEARLKGCSIYTKTCV 868

Query: 421 TLIKAYVKAK 430
            L+ +  KA+
Sbjct: 869 VLLDSLHKAE 878



 Score = 39.7 bits (91), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 37/152 (24%), Positives = 65/152 (42%), Gaps = 9/152 (5%)

Query: 305 EQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALEL 364
           E YNS++ V  +    +    +L+EMS+ G  P+  T   + L   KS  + E F  ++ 
Sbjct: 131 EAYNSLLMVMARTRKFNCLEQILEEMSIAGFGPSNNTCIEIVLSFIKSRKLREAFTFIQT 190

Query: 365 GMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIK 424
             KL    K R   P      ++I   +   D      LF+++++  Y     ++ TLI+
Sbjct: 191 MRKL----KFR---PAFSAYTNLIGALSTSRDSDCMLTLFQQMQELGYAVNVHLFTTLIR 243

Query: 425 AYVKAKINDP--NLLRRMILGGARPDAETYSL 454
            + +    D   +LL  M      PD   Y++
Sbjct: 244 VFAREGRVDAALSLLDEMKSNSLEPDVVLYNV 275


>gi|357449339|ref|XP_003594946.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|124359380|gb|ABN05846.1| Tetratricopeptide-like helical [Medicago truncatula]
 gi|355483994|gb|AES65197.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 849

 Score = 80.9 bits (198), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 80/353 (22%), Positives = 150/353 (42%), Gaps = 20/353 (5%)

Query: 83  KLFCCIPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSS 142
           KL  C P    + + +N ++  C +KG  K   + +++M+  G       FN LI     
Sbjct: 475 KLNGCPP----DRITWNTMLAVCGEKGKQKFVSQVLREMKNCGFEPDKETFNTLISAYGR 530

Query: 143 PGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVS 202
            G    +  +  +M A    P ++T++ L+   A   N +    V  DM++   +PNE S
Sbjct: 531 CGSEVDVAKMYGEMVAAGFTPCITTYNALLNALARRGNWKAAESVVLDMRKKGFKPNETS 590

Query: 203 YCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQ 262
           Y +L   ++ A      E     +       +W  L  L++      + K +ER +    
Sbjct: 591 YSLLLHCYSKAGNVRGLEKVEMEIYDGHVFPSWMLLRTLVLTNYKCRQLKGMERAF---H 647

Query: 263 ELPNVRSKSYVLAIEA----FGRIAQVSRAEELWLEMQSVKQLKAT-EQYNSVISVYCKN 317
           +L N   K  ++ I +    F R  ++ +A E+ L++  V  L+     YNS+I +Y + 
Sbjct: 648 QLQNNGYKLDMVVINSMLSMFVRNQKLEKAHEM-LDVIHVSGLQPNLVTYNSLIDLYARV 706

Query: 318 GFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSS 377
           G   KA  +LK++  +G  P+ ++Y  +  G  K  LV+E        +++++       
Sbjct: 707 GDCWKAEEMLKDIQNSGISPDVVSYNTVIKGFCKKGLVQE-------AIRILSEMTANGV 759

Query: 378 TPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAK 430
            P   T  + +  +A  G    A+ +   + +         Y  +I  Y+KAK
Sbjct: 760 QPCPITFNTFMSCYAGNGLFAEADEVIRYMIEHGCMPNELTYKIVIDGYIKAK 812



 Score = 75.5 bits (184), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 102/465 (21%), Positives = 203/465 (43%), Gaps = 32/465 (6%)

Query: 10  VGSAFQSWMREGFPVHRGEIFHS--INRLRKLQLN---KRALEVMEWVIRERPYRPKELD 64
           VGS+    + E F   +GE+  S     L+ L L+   +RA  + EWV         ++D
Sbjct: 143 VGSSLNDLI-EFFNSVKGELLESDITGLLKGLDLSGNWERAFLLFEWVWLNFGSENMKVD 201

Query: 65  YSYLLEFTIKNHG----ISQGEKLFCCIP-KDYQNELLYNNLVI-ACLDKGVIKLSLEYM 118
               +EF +K  G     S   KLF  IP ++Y  ++     V+ A    G  K ++E  
Sbjct: 202 -DQSVEFMVKMLGRESQYSIASKLFDIIPVEEYSLDVKACTTVLHAYARTGKYKRAIEIF 260

Query: 119 KKMRVLGHSISYLVFNRLIILNSSPGRR-KTIPNILRQMKADKVAPHVSTFHILMKIEAN 177
           +KM+  G   + + +N ++ +    GR    I  +L +M++  +     T   ++     
Sbjct: 261 EKMKETGLDPTLVTYNVMLDVYGKMGRAWSMILELLDEMRSKGLEFDEFTCTTVISACGR 320

Query: 178 DHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWST 237
           +  ++   + + D+K +  +P   +Y  +      A +YT A   ++ +E +    +  T
Sbjct: 321 EGILDEARRFFDDLKLNGYKPGTATYNSMLQVFGKAGVYTEALNILKEMEDNNCEPDAIT 380

Query: 238 LDVLIILY---GYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLE 294
            + L+  Y   G+  +G  +    A+   +PN  + +Y   I A+G+     +A E++ +
Sbjct: 381 YNELVAAYVRAGFHDEGAAVIDTMASKGVMPN--AITYTTVINAYGKAGDADKALEVFGQ 438

Query: 295 MQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNL 354
           M+ +  +     YN+V+ +  K    +    +L +M +NGC P+ IT+  +   C +   
Sbjct: 439 MKELGCVPNVCTYNNVLVLLGKRSRSEDMIKILCDMKLNGCPPDRITWNTMLAVCGEKG- 497

Query: 355 VEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTK 414
            ++ F +     +++   K     P  ET  ++I  +   G   +   ++ E+  A +T 
Sbjct: 498 -KQKFVS-----QVLREMKNCGFEPDKETFNTLISAYGRCGSEVDVAKMYGEMVAAGFTP 551

Query: 415 YTFVYNTLIKAYVKAKINDPNLLRRMILG----GARPDAETYSLL 455
               YN L+ A   A+  +      ++L     G +P+  +YSLL
Sbjct: 552 CITTYNALLNAL--ARRGNWKAAESVVLDMRKKGFKPNETSYSLL 594



 Score = 67.4 bits (163), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 79/375 (21%), Positives = 167/375 (44%), Gaps = 20/375 (5%)

Query: 87  CIPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRR 146
           C+P    N   YNN+++    +   +  ++ +  M++ G     + +N ++ +    G++
Sbjct: 444 CVP----NVCTYNNVLVLLGKRSRSEDMIKILCDMKLNGCPPDRITWNTMLAVCGEKGKQ 499

Query: 147 KTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCIL 206
           K +  +LR+MK     P   TF+ L+       +   + K+Y +M  +   P   +Y  L
Sbjct: 500 KFVSQVLREMKNCGFEPDKETFNTLISAYGRCGSEVDVAKMYGEMVAAGFTPCITTYNAL 559

Query: 207 ATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQE--- 263
             A A    +  AE+ V  + K     N ++  +L+  Y      + LE++   + +   
Sbjct: 560 LNALARRGNWKAAESVVLDMRKKGFKPNETSYSLLLHCYSKAGNVRGLEKVEMEIYDGHV 619

Query: 264 LPN-VRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDK 322
            P+ +  ++ VL      +  Q+   E  + ++Q+          NS++S++ +N  ++K
Sbjct: 620 FPSWMLLRTLVLTNY---KCRQLKGMERAFHQLQNNGYKLDMVVINSMLSMFVRNQKLEK 676

Query: 323 ASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLE 382
           A  +L  + ++G +PN +TY  L +  +    V + +KA E+ +K I    +   +P + 
Sbjct: 677 AHEMLDVIHVSGLQPNLVTYNSL-IDLYAR--VGDCWKAEEM-LKDIQNSGI---SPDVV 729

Query: 383 TTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKI--NDPNLLRRM 440
           +  ++I+ F +KG V  A  +  E+           +NT +  Y    +      ++R M
Sbjct: 730 SYNTVIKGFCKKGLVQEAIRILSEMTANGVQPCPITFNTFMSCYAGNGLFAEADEVIRYM 789

Query: 441 ILGGARPDAETYSLL 455
           I  G  P+  TY ++
Sbjct: 790 IEHGCMPNELTYKIV 804



 Score = 45.4 bits (106), Expect = 0.055,   Method: Compositional matrix adjust.
 Identities = 45/208 (21%), Positives = 89/208 (42%), Gaps = 9/208 (4%)

Query: 254 LERIWATV-QELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVIS 312
            E +W     E   V  +S    ++  GR +Q S A +L+  +   +     +   +V+ 
Sbjct: 186 FEWVWLNFGSENMKVDDQSVEFMVKMLGRESQYSIASKLFDIIPVEEYSLDVKACTTVLH 245

Query: 313 VYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTK 372
            Y + G   +A  + ++M   G  P  +TY  +       ++  +  +A  + ++L+   
Sbjct: 246 AYARTGKYKRAIEIFEKMKETGLDPTLVTYNVML------DVYGKMGRAWSMILELLDEM 299

Query: 373 KVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKIN 432
           + +       T  ++I     +G +  A   F++LK   Y   T  YN++++ + KA + 
Sbjct: 300 RSKGLEFDEFTCTTVISACGREGILDEARRFFDDLKLNGYKPGTATYNSMLQVFGKAGVY 359

Query: 433 DP--NLLRRMILGGARPDAETYSLLKLA 458
               N+L+ M      PDA TY+ L  A
Sbjct: 360 TEALNILKEMEDNNCEPDAITYNELVAA 387


>gi|449513353|ref|XP_004164304.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g06920-like [Cucumis sativus]
          Length = 904

 Score = 80.9 bits (198), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 89/387 (22%), Positives = 164/387 (42%), Gaps = 62/387 (16%)

Query: 87  CIPKDYQNELLYNNLVIACLD-KGVIKLSLEYMKKMRVLGHSISYL-VFNRLIILNSSPG 144
           CIP      ++  N +++CL  KG +  +L+  ++M+    +I  L  +N +I +    G
Sbjct: 371 CIPS-----VVSYNCILSCLGRKGQVDEALKKFEEMK--KDAIPNLSTYNIMIDMLCKAG 423

Query: 145 RRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYC 204
           + +T   +   MK   + P+V T +I++        ++    ++  +      P+ V+YC
Sbjct: 424 KLETALVVRDAMKDAGLFPNVITVNIMVDRLCKAQRLDDACSIFEGLDHKTCRPDAVTYC 483

Query: 205 ILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDV------------------------ 240
            L     + R   V E Y +  E+ +  N      V                        
Sbjct: 484 SLI--EGLGRHGRVDEAY-KLYEQMLDANQIPNAVVYTSLIRNFFKCGRKEDGHKIYNEM 540

Query: 241 --------LIILYGYLA---KGKDLERIWATVQELPNV----RSKSYVLAIEAFGRIAQV 285
                   L++L  Y+    K  ++E+  A  QE+ N+     ++SY + I    +    
Sbjct: 541 LRLGCSPDLLLLNTYMDCVFKAGEIEKGRALFQEIKNLGFIPDARSYTILIHGLVKAGFA 600

Query: 286 SRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHL 345
             A EL+  M+    +  T  YN+VI  +CK+G ++KA  LL+EM   G +P  +TY  +
Sbjct: 601 HEAYELFYTMKEQGCVLDTRAYNTVIDGFCKSGKVNKAYQLLEEMKTKGHEPTVVTYGSV 660

Query: 346 ALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTL--SIIEIFAEKGDVGNAENL 403
             G  K + ++E +   E         + +S    L   +  S+I+ F + G +  A  +
Sbjct: 661 IDGLAKIDRLDEAYMLFE---------EAKSKGIELNVVIYSSLIDGFGKVGRIDEAYLI 711

Query: 404 FEELKKANYTKYTFVYNTLIKAYVKAK 430
            EEL +   T   + +N L+ A VKA+
Sbjct: 712 MEELMQKGLTPNVYTWNCLLDALVKAE 738



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 81/356 (22%), Positives = 153/356 (42%), Gaps = 15/356 (4%)

Query: 98  YNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMK 157
           Y NL+ A          L   ++M+ LG++++  +F  LI + +  GR     ++L +MK
Sbjct: 203 YTNLIGALSTSRDSDCMLTLFQQMQELGYAVNVHLFTTLIRVFAREGRVDAALSLLDEMK 262

Query: 158 ADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYT 217
           ++ + P V  +++ +        ++   K + +MK + +  ++V+Y  +      A    
Sbjct: 263 SNSLEPDVVLYNVCIDCFGKAGKVDMAWKXFHEMKANGLVLDDVTYTSMIGVLCKADRLN 322

Query: 218 VAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQE---LPNVRSKSYVL 274
            A    E ++++         + +I+ YG   K +D   +    +    +P+V S + +L
Sbjct: 323 EAVELFEHMDQNKQVPCAYAYNTMIMGYGMAGKFEDAYSLLERQRRKGCIPSVVSYNCIL 382

Query: 275 AIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNG 334
           +    GR  QV  A + + EM+    +     YN +I + CK G ++ A  +   M   G
Sbjct: 383 S--CLGRKGQVDEALKKFEEMKK-DAIPNLSTYNIMIDMLCKAGKLETALVVRDAMKDAG 439

Query: 335 CKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEK 394
             PN IT   +     K+  +++     E G+   T +      P   T  S+IE     
Sbjct: 440 LFPNVITVNIMVDRLCKAQRLDDACSIFE-GLDHKTCR------PDAVTYCSLIEGLGRH 492

Query: 395 GDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKA--KINDPNLLRRMILGGARPD 448
           G V  A  L+E++  AN      VY +LI+ + K   K +   +   M+  G  PD
Sbjct: 493 GRVDEAYKLYEQMLDANQIPNAVVYTSLIRNFFKCGRKEDGHKIYNEMLRLGCSPD 548



 Score = 62.8 bits (151), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 72/352 (20%), Positives = 140/352 (39%), Gaps = 54/352 (15%)

Query: 111 IKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHI 170
           ++ +  +++ MR L    ++  +  LI   S+      +  + +QM+    A +V  F  
Sbjct: 181 LREAFTFIQTMRKLKFRPAFSAYTNLIGALSTSRDSDCMLTLFQQMQELGYAVNVHLFTT 240

Query: 171 LMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSM 230
           L+++ A +  ++  + +  +MK + +EP+ V Y                           
Sbjct: 241 LIRVFAREGRVDAALSLLDEMKSNSLEPDVVLY--------------------------- 273

Query: 231 TGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPN----VRSKSYVLAIEAFGRIAQVS 286
                   +V I  +G   K   ++  W    E+      +   +Y   I    +  +++
Sbjct: 274 --------NVCIDCFG---KAGKVDMAWKXFHEMKANGLVLDDVTYTSMIGVLCKADRLN 322

Query: 287 RAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLA 346
            A EL+  M   KQ+     YN++I  Y   G  + A  LL+     GC P+ ++Y  + 
Sbjct: 323 EAVELFEHMDQNKQVPCAYAYNTMIMGYGMAGKFEDAYSLLERQRRKGCIPSVVSYNCI- 381

Query: 347 LGCF-KSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFE 405
           L C  +   V+E  K  E  MK       + + P L T   +I++  + G +  A  + +
Sbjct: 382 LSCLGRKGQVDEALKKFE-EMK-------KDAIPNLSTYNIMIDMLCKAGKLETALVVRD 433

Query: 406 ELKKANYTKYTFVYNTLIKAYVKA-KINDP-NLLRRMILGGARPDAETYSLL 455
            +K A         N ++    KA +++D  ++   +     RPDA TY  L
Sbjct: 434 AMKDAGLFPNVITVNIMVDRLCKAQRLDDACSIFEGLDHKTCRPDAVTYCSL 485



 Score = 55.8 bits (133), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 63/303 (20%), Positives = 120/303 (39%), Gaps = 23/303 (7%)

Query: 133 FNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMK 192
           +N L+++ +   +   +  IL +M      P  +T   ++        +         M+
Sbjct: 133 YNSLLMVMARTRKFNCLEQILEEMSIAGFGPSNNTCIEIVLSFIKSRKLREAFTFIQTMR 192

Query: 193 RSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGK 252
           + +  P   +Y  L  A + +R      T  + +++     N      LI ++       
Sbjct: 193 KLKFRPAFSAYTNLIGALSTSRDSDCMLTLFQQMQELGYAVNVHLFTTLIRVFAREG--- 249

Query: 253 DLERIWATVQELPNVRSKS-------YVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATE 305
              R+ A +  L  ++S S       Y + I+ FG+  +V  A + + EM++   +    
Sbjct: 250 ---RVDAALSLLDEMKSNSLEPDVVLYNVCIDCFGKAGKVDMAWKXFHEMKANGLVLDDV 306

Query: 306 QYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELG 365
            Y S+I V CK   +++A  L + M  N   P A  Y  + +G   +   E+ +  LE  
Sbjct: 307 TYTSMIGVLCKADRLNEAVELFEHMDQNKQVPCAYAYNTMIMGYGMAGKFEDAYSLLE-- 364

Query: 366 MKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKK---ANYTKYTFVYNTL 422
                 ++ +   P + +   I+     KG V  A   FEE+KK    N + Y  + + L
Sbjct: 365 -----RQRRKGCIPSVVSYNCILSCLGRKGQVDEALKKFEEMKKDAIPNLSTYNIMIDML 419

Query: 423 IKA 425
            KA
Sbjct: 420 CKA 422



 Score = 47.0 bits (110), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 51/219 (23%), Positives = 97/219 (44%), Gaps = 12/219 (5%)

Query: 242 IILYGYLAKGKDLE--RIWATVQELPNV-RSKSYVLAIEAFGRIAQVSRAEELWLEMQSV 298
           I+++G +  G   E   ++ T++E   V  +++Y   I+ F +  +V++A +L  EM++ 
Sbjct: 589 ILIHGLVKAGFAHEAYELFYTMKEQGCVLDTRAYNTVIDGFCKSGKVNKAYQLLEEMKTK 648

Query: 299 KQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEG 358
                   Y SVI    K   +D+A  L +E    G + N + Y  L  G  K   ++E 
Sbjct: 649 GHEPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKGIELNVVIYSSLIDGFGKVGRIDEA 708

Query: 359 FKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFV 418
           +  +E  M+       +  TP + T   +++   +  ++  A   F+ +K    T     
Sbjct: 709 YLIMEELMQ-------KGLTPNVYTWNCLLDALVKAEEISEALVCFQSMKDLKCTPNYIT 761

Query: 419 YNTLIKAYVKA-KINDPNLL-RRMILGGARPDAETYSLL 455
           Y+ LI    K  K N   +  + M   G +P+  TY+ +
Sbjct: 762 YSILIHGLCKIRKFNKAFVFWQEMQKQGFKPNVFTYTTM 800



 Score = 43.9 bits (102), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 98/430 (22%), Positives = 162/430 (37%), Gaps = 71/430 (16%)

Query: 9   PVGSAFQSWMREGFPVHRGEIFHSI-NRLRKLQLNKRALEVMEWVIRERPYRPKELDYSY 67
           P    + S +R  F   R E  H I N + +L  +   L +  ++  +  ++  E++   
Sbjct: 512 PNAVVYTSLIRNFFKCGRKEDGHKIYNEMLRLGCSPDLLLLNTYM--DCVFKAGEIEKGR 569

Query: 68  LLEFTIKNHGISQGEKLFCCIPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHS 127
            L   IKN G          IP      +L + LV A    G    + E    M+  G  
Sbjct: 570 ALFQEIKNLGF---------IPDARSYTILIHGLVKA----GFAHEAYELFYTMKEQGCV 616

Query: 128 ISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKV 187
           +    +N +I      G+      +L +MK     P V T+  ++   A    ++    +
Sbjct: 617 LDTRAYNTVIDGFCKSGKVNKAYQLLEEMKTKGHEPTVVTYGSVIDGLAKIDRLDEAYML 676

Query: 188 YSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYV---EALEKSMTGNNWSTLDVLIIL 244
           + + K   +E N V Y  L       ++  + E Y+   E ++K +T             
Sbjct: 677 FEEAKSKGIELNVVIYSSLI--DGFGKVGRIDEAYLIMEELMQKGLT------------- 721

Query: 245 YGYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKAT 304
                               PNV + + +L  +A  +  ++S A    +  QS+K LK T
Sbjct: 722 --------------------PNVYTWNCLL--DALVKAEEISEA---LVCFQSMKDLKCT 756

Query: 305 EQYNS---VISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKS-NLVEEGFK 360
             Y +   +I   CK    +KA    +EM   G KPN  TY  +  G  K+ N+VE    
Sbjct: 757 PNYITYSILIHGLCKIRKFNKAFVFWQEMQKQGFKPNVFTYTTMISGLAKAGNIVE---- 812

Query: 361 ALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYN 420
           A  L  K      V  S  +     +IIE  +      +A  LFEE +    + YT    
Sbjct: 813 ADTLFEKFKEKGGVADSAIY----NAIIEGLSNANRASDAYRLFEEARLKGCSIYTKTCV 868

Query: 421 TLIKAYVKAK 430
            L+ +  KA+
Sbjct: 869 VLLDSLHKAE 878



 Score = 39.3 bits (90), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 37/152 (24%), Positives = 65/152 (42%), Gaps = 9/152 (5%)

Query: 305 EQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALEL 364
           E YNS++ V  +    +    +L+EMS+ G  P+  T   + L   KS  + E F  ++ 
Sbjct: 131 EAYNSLLMVMARTRKFNCLEQILEEMSIAGFGPSNNTCIEIVLSFIKSRKLREAFTFIQT 190

Query: 365 GMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIK 424
             KL    K R   P      ++I   +   D      LF+++++  Y     ++ TLI+
Sbjct: 191 MRKL----KFR---PAFSAYTNLIGALSTSRDSDCMLTLFQQMQELGYAVNVHLFTTLIR 243

Query: 425 AYVKAKINDP--NLLRRMILGGARPDAETYSL 454
            + +    D   +LL  M      PD   Y++
Sbjct: 244 VFAREGRVDAALSLLDEMKSNSLEPDVVLYNV 275


>gi|225430498|ref|XP_002283327.1| PREDICTED: pentatricopeptide repeat-containing protein At4g31850,
           chloroplastic [Vitis vinifera]
 gi|296082142|emb|CBI21147.3| unnamed protein product [Vitis vinifera]
          Length = 1113

 Score = 80.9 bits (198), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 85/366 (23%), Positives = 151/366 (41%), Gaps = 39/366 (10%)

Query: 118 MKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEAN 177
           ++KMR +G  ++   +  LI L    G  +    + R+M ++ + P + T+  LM     
Sbjct: 180 LEKMRKVGFVLNGYSYIGLIHLLLKSGFCREALKVYRRMVSEGIKPSLKTYSALMVALGK 239

Query: 178 DHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETY--VEALEKSMTGNNW 235
             +IE +M +  +M+   + PN  ++ I      + R   + E Y  ++ ++ +  G + 
Sbjct: 240 RRDIETVMGLLQEMESLGLRPNIYTFTI--CIRILGRAGKIDEAYGILKRMDDAGCGPDV 297

Query: 236 STLDVLIILY---GYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELW 292
            T  VLI      G L   K+L          P+    +Y+  ++ F     +   +E W
Sbjct: 298 VTYTVLIDALCNAGKLNNAKELFLKMKASSHKPD--RVTYITLLDKFSDHGDLDAIKEFW 355

Query: 293 LEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKS 352
            EM++   L     +  +I   CK G +D+A G L  M   G  PN  TY  L  G  + 
Sbjct: 356 SEMEADGYLPDVVTFTILIDALCKVGKVDEAFGTLDVMKKQGVAPNLHTYNTLICGLLRL 415

Query: 353 NLVEEGF--------------------------KALELGMKLITTKKVRSS--TPWLETT 384
           N ++E                            K+ E G  + T +K++++   P +   
Sbjct: 416 NRLDEALELFNSMESLGLETTAYTYILFIDYYGKSGESGKAIKTFEKMKTNGIVPNIVAC 475

Query: 385 LSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKA-KINDP-NLLRRMIL 442
            + +   AE+G +  A+  F  LKK         YN L++ Y KA +++D   LL  M  
Sbjct: 476 NASLYSLAEQGRLEEAKEFFNGLKKCGLAPDAITYNILMRCYGKAGRVDDAIKLLSEMEE 535

Query: 443 GGARPD 448
            G  P+
Sbjct: 536 NGCDPE 541



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 71/313 (22%), Positives = 132/313 (42%), Gaps = 20/313 (6%)

Query: 151  NILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAH 210
             +  +MK     P V T+++ +        I+ L  +Y +M     +PN +++ I+    
Sbjct: 809  GLFYKMKNAGCTPDVFTYNLFLDALGKSGKIKELFDLYEEMLFRGCKPNTITHNIVIFGL 868

Query: 211  AVAR-LYTVAETYVEALEKSMTGNNWS---TLDVLIILYGYLAKGKDLERIWATVQELPN 266
              +  L    + Y + +    +   W+    +D L+ L G L + K           +PN
Sbjct: 869  VKSNSLDKAIDLYYDLMSGDFSPTPWTYGPLIDGLLKL-GRLEEAKQFFEEMLDYGCMPN 927

Query: 267  VRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGL 326
                 Y + +  FG+   V  A EL+  M         + Y+ ++   C  G +D A   
Sbjct: 928  --CPLYNILMNGFGKQGDVETACELFRRMVKEGIRPDLKSYSIMVDCLCMVGKVDDALHY 985

Query: 327  LKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLS 386
             +E+ ++G  P+ + Y  +  G  +S  VEE        + L    + R  TP L T  +
Sbjct: 986  FEELKLSGLDPDLVCYNLMINGLGRSQRVEEA-------LSLFDEMRNRGITPDLYTYNA 1038

Query: 387  IIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKINDPN----LLRRMIL 442
            +I      G V  A  ++EEL+        F YN LI+ +  +   +P+    + ++M++
Sbjct: 1039 LILNLGIAGMVEEAGKMYEELQLKGLEPNVFTYNALIRGHSMS--GNPDRAYAVYKKMMV 1096

Query: 443  GGARPDAETYSLL 455
            GG RP+  T++ L
Sbjct: 1097 GGCRPNTGTFAQL 1109



 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 89/366 (24%), Positives = 144/366 (39%), Gaps = 24/366 (6%)

Query: 98  YNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMK 157
           Y  L+ A  + G +  + E   KM+   H    + +  L+   S  G    I     +M+
Sbjct: 300 YTVLIDALCNAGKLNNAKELFLKMKASSHKPDRVTYITLLDKFSDHGDLDAIKEFWSEME 359

Query: 158 ADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYT 217
           AD   P V TF IL+        ++        MK+  V PN  +Y  L     + RL  
Sbjct: 360 ADGYLPDVVTFTILIDALCKVGKVDEAFGTLDVMKKQGVAPNLHTYNTLICG--LLRLNR 417

Query: 218 VAETYVEALEKSMTGNNWSTLDVLIILY-GYLAKGKDLERIWATVQEL------PN-VRS 269
           + E     L  SM      T     IL+  Y  K  +  +   T +++      PN V  
Sbjct: 418 LDEAL--ELFNSMESLGLETTAYTYILFIDYYGKSGESGKAIKTFEKMKTNGIVPNIVAC 475

Query: 270 KSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKE 329
            + + ++   GR+ +   A+E +  ++          YN ++  Y K G +D A  LL E
Sbjct: 476 NASLYSLAEQGRLEE---AKEFFNGLKKCGLAPDAITYNILMRCYGKAGRVDDAIKLLSE 532

Query: 330 MSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIE 389
           M  NGC P  +    L    +K++ V+E +K  +         K     P + T  +++ 
Sbjct: 533 MEENGCDPEVVIINSLIDTLYKADRVDEAWKMFQ-------RMKEMKLAPTVVTYNTLLA 585

Query: 390 IFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKINDPNL--LRRMILGGARP 447
              ++G V  A  LF+ +   +    T  +NTL+    K    D  L  L RM      P
Sbjct: 586 GLGKEGRVQEATALFKGMIADDCPPNTISFNTLLDCLCKNGEVDLALKMLFRMTEMNCFP 645

Query: 448 DAETYS 453
           D  TY+
Sbjct: 646 DVLTYN 651



 Score = 65.9 bits (159), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 61/270 (22%), Positives = 109/270 (40%), Gaps = 15/270 (5%)

Query: 98  YNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMK 157
           YN L+   L    +  +LE    M  LG   +   +   I      G          +MK
Sbjct: 405 YNTLICGLLRLNRLDEALELFNSMESLGLETTAYTYILFIDYYGKSGESGKAIKTFEKMK 464

Query: 158 ADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYT 217
            + + P++   +  +   A    +E   + ++ +K+  + P+ ++Y IL   +  A    
Sbjct: 465 TNGIVPNIVACNASLYSLAEQGRLEEAKEFFNGLKKCGLAPDAITYNILMRCYGKAGRVD 524

Query: 218 VAETYVEALEKSMTGNNWSTLDVLII--LYGYLAKGKDLERIWATVQEL------PNVRS 269
            A   +  +E+     N    +V+II  L   L K   ++  W   Q +      P V +
Sbjct: 525 DAIKLLSEMEE-----NGCDPEVVIINSLIDTLYKADRVDEAWKMFQRMKEMKLAPTVVT 579

Query: 270 KSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKE 329
            + +LA    G+  +V  A  L+  M +      T  +N+++   CKNG +D A  +L  
Sbjct: 580 YNTLLA--GLGKEGRVQEATALFKGMIADDCPPNTISFNTLLDCLCKNGEVDLALKMLFR 637

Query: 330 MSMNGCKPNAITYRHLALGCFKSNLVEEGF 359
           M+   C P+ +TY  +  G  K N V   F
Sbjct: 638 MTEMNCFPDVLTYNTVIYGLIKENRVNYAF 667



 Score = 53.1 bits (126), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 84/400 (21%), Positives = 154/400 (38%), Gaps = 52/400 (13%)

Query: 98  YNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMK 157
           YN L+     +G ++ +    K M       + + FN L+      G       +L +M 
Sbjct: 580 YNTLLAGLGKEGRVQEATALFKGMIADDCPPNTISFNTLLDCLCKNGEVDLALKMLFRMT 639

Query: 158 ADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATA----HAVA 213
                P V T++ ++     ++ +     ++  MK+  + P+ V+ C L         + 
Sbjct: 640 EMNCFPDVLTYNTVIYGLIKENRVNYAFWLFHQMKKV-IYPDYVTLCTLLPGVIKDGRIE 698

Query: 214 RLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPN--VRSKS 271
             + VA+ +V  +     G+ W  L     + G L + +  + I      + N      S
Sbjct: 699 DAFRVAKEFVHHVGDHADGSFWEDL-----MGGILIEAEIGQSILFAESLVCNTICEDDS 753

Query: 272 YVLAIEAF-GRIAQVSRAEELWLEM-QSVKQLKATEQYNSVISVYCKNGFIDKASGLLKE 329
            ++ +  F  +  +   A  ++L++ +S     + E YNS+I    K    + A GL  +
Sbjct: 754 VLIPLVKFLCKHGKAVDAYNVFLKLTKSFCITPSLEAYNSLIDGLLKARLTEMAWGLFYK 813

Query: 330 MSMNGCKPNAITYRHLALGCFKSNLVEEGF------------------------------ 359
           M   GC P+  TY        KS  ++E F                              
Sbjct: 814 MKNAGCTPDVFTYNLFLDALGKSGKIKELFDLYEEMLFRGCKPNTITHNIVIFGLVKSNS 873

Query: 360 --KALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTF 417
             KA++L   L++     S TPW  T   +I+   + G +  A+  FEE+          
Sbjct: 874 LDKAIDLYYDLMSGD--FSPTPW--TYGPLIDGLLKLGRLEEAKQFFEEMLDYGCMPNCP 929

Query: 418 VYNTLIKAYVKAKINDP--NLLRRMILGGARPDAETYSLL 455
           +YN L+  + K    +    L RRM+  G RPD ++YS++
Sbjct: 930 LYNILMNGFGKQGDVETACELFRRMVKEGIRPDLKSYSIM 969



 Score = 49.3 bits (116), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 48/214 (22%), Positives = 88/214 (41%), Gaps = 23/214 (10%)

Query: 144  GRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSY 203
            GR +       +M      P+   ++ILM       ++E   +++  M +  + P+  SY
Sbjct: 907  GRLEEAKQFFEEMLDYGCMPNCPLYNILMNGFGKQGDVETACELFRRMVKEGIRPDLKSY 966

Query: 204  CILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKG-KDLERIWATVQ 262
             I+     +      A  Y E L+        S LD  ++ Y  +  G    +R+   + 
Sbjct: 967  SIMVDCLCMVGKVDDALHYFEELK-------LSGLDPDLVCYNLMINGLGRSQRVEEALS 1019

Query: 263  ELPNVRSK-------SYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATE----QYNSVI 311
                +R++       +Y   I   G    V  A +++ E+Q    LK  E     YN++I
Sbjct: 1020 LFDEMRNRGITPDLYTYNALILNLGIAGMVEEAGKMYEELQ----LKGLEPNVFTYNALI 1075

Query: 312  SVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHL 345
              +  +G  D+A  + K+M + GC+PN  T+  L
Sbjct: 1076 RGHSMSGNPDRAYAVYKKMMVGGCRPNTGTFAQL 1109


>gi|297833172|ref|XP_002884468.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297330308|gb|EFH60727.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 598

 Score = 80.9 bits (198), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 91/419 (21%), Positives = 184/419 (43%), Gaps = 18/419 (4%)

Query: 44  RALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQGEKLFCCI-PKDYQNELLYNNLV 102
           +A+ VME  I E+  +P    Y+ L+    K + I    ++   +  KD+  + +  N++
Sbjct: 138 KAVRVME--ILEKFGQPDVFAYNALINGFCKMNRIDDATRVLDRMRSKDFSPDTVTYNIM 195

Query: 103 IACL-DKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKV 161
           I  L  +G + L+L+ + ++       + + +  LI      G       +L +M +  +
Sbjct: 196 IGSLCSRGKLDLALKVLDQLLSDNCQPTVITYTILIEATMLEGGVDEALKLLDEMLSRGL 255

Query: 162 APHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAET 221
            P + T++ +++    +  ++   ++  +++    EP+ +SY IL  A      +   E 
Sbjct: 256 KPDMFTYNTIIRGMCKEGMVDRAFEMIRNLELKGCEPDVISYNILLRALLNQGKWEEGEK 315

Query: 222 YVEALEKSMTGNNWSTLDVLIILY---GYLAKGKDLERIWATVQELPNVRSKSYVLAIEA 278
            +  +       N  T  +LI      G + +  +L ++       P+  + SY   I A
Sbjct: 316 LMTKMFSEKCDPNVVTYSILITTLCRDGKIEEAMNLLKLMKEKGLTPD--AYSYDPLIAA 373

Query: 279 FGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPN 338
           F R  ++  A E    M S   L     YN+V++  CKNG  D+A  +  ++   GC PN
Sbjct: 374 FCREGRLDVAIEFLETMISDGCLPDIVNYNTVLATLCKNGKADQALEIFGKLGEVGCSPN 433

Query: 339 AITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVG 398
           + +Y  +    + S    +  +AL + +++++        P   T  S+I     +G V 
Sbjct: 434 SSSYNTMFSALWSSG---DKIRALHMILEMVSN----GIDPDEITYNSMISCLCREGMVD 486

Query: 399 NAENLFEELKKANYTKYTFVYNTLIKAYVKA-KINDP-NLLRRMILGGARPDAETYSLL 455
            A  L  +++   +      YN ++  + KA +I D  ++L  M+  G RP+  TY++L
Sbjct: 487 KAFELLVDMRSCEFHPSVVTYNIVLLGFCKAHRIEDAIDVLDSMVGNGCRPNETTYTVL 545


>gi|357140426|ref|XP_003571769.1| PREDICTED: pentatricopeptide repeat-containing protein At1g51965,
           mitochondrial-like [Brachypodium distachyon]
          Length = 637

 Score = 80.9 bits (198), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 109/463 (23%), Positives = 202/463 (43%), Gaps = 58/463 (12%)

Query: 44  RALEVME-WVIRERPYRPKELDYSYLLEFTIKNHGISQGEKLFCCIP-KDYQNELL-YNN 100
           R LE+ + W +R   Y      Y  +++  +++  +S+G +++  +  K Y+ ++  YN 
Sbjct: 172 RCLELAKKWGLRLNGYT-----YKCIVQAHLRSREVSKGFEVYEEMHRKGYKLDIFAYNM 226

Query: 101 LVIACLDKGVIKLS---LEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMK 157
           L+ A    G++  +    E MK+   +  + +Y +   LI ++   G+     +   +M 
Sbjct: 227 LLDALAKAGMVDQAYQVFEDMKQKYCVPDAYTYTI---LIRMSGKTGQTYKFLSFFDEMV 283

Query: 158 ADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYC----ILATAHAVA 213
           +   A ++  ++ +++    +  ++ ++ V S M  S+ +PN+ +Y     ILAT   + 
Sbjct: 284 SRGCALNLIAYNTVIEALGKNKMVDKVIFVLSKMIESDCQPNQFTYSLTLDILATEGQLH 343

Query: 214 RLYTVAETYVEALEKSM----------TGNN----------WST-----LDVLIILYGYL 248
           RL  V +     L KS+          +G+           W++      D  I +   L
Sbjct: 344 RLNEVLDICDRYLNKSIYSYLVKSLCKSGHASEAHNVFCRMWNSHESGDRDAFISMLEVL 403

Query: 249 A-KGKDLERIWATVQELP----NVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKA 303
              GK LE I   +  +P    +     Y +   A G++ QVS    L+ +M++      
Sbjct: 404 CNSGKTLEAI-DLLHMMPEKGIDTDIGMYNMVFSALGKLKQVSFISTLFDKMKASGIAPD 462

Query: 304 TEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALE 363
              YN +IS Y + G +DKASGL +EM  + CKP+ ITY  L + C   N        L+
Sbjct: 463 LFTYNIMISSYGRVGLVDKASGLFEEMEASSCKPDVITYNTL-INCLGKN------GDLD 515

Query: 364 LGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLI 423
               L    + +   P + T  ++IE F +   V  A +LF+E+           YN L+
Sbjct: 516 EAHILFKEMQEKGYDPDVFTYSTLIECFGKSNKVDMACSLFDEMIAEGCIPNIVTYNILL 575

Query: 424 KAY-VKAKINDPN-LLRRMILGGARPDAETYSLLKLAEQFQKK 464
                + K  + +     M   G  PD+ TYS+L+  E   ++
Sbjct: 576 DCLERRGKTAEAHKHYETMKQQGLTPDSITYSILERLESRSQR 618



 Score = 41.6 bits (96), Expect = 0.92,   Method: Compositional matrix adjust.
 Identities = 52/223 (23%), Positives = 97/223 (43%), Gaps = 27/223 (12%)

Query: 133 FNRLIIL----NSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVY 188
           +NR++ L     + PG       ++ QM+ D VA ++ST ++L+ +      +   +++ 
Sbjct: 121 YNRILALLFRSKADPGEAL---RLVAQMERDGVAGNISTVNLLVGMGGGGVEVARCLEL- 176

Query: 189 SDMKRSEVEPNEVSYCILATAHAVARLYTVA-ETYVEALEKSMTGNNWSTLDVLI--ILY 245
              K+  +  N  +Y  +  AH  +R  +   E Y E   K         LD+    +L 
Sbjct: 177 --AKKWGLRLNGYTYKCIVQAHLRSREVSKGFEVYEEMHRKGY------KLDIFAYNMLL 228

Query: 246 GYLAKGKDLERIWATVQEL------PNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVK 299
             LAK   +++ +   +++      P+  + +Y + I   G+  Q  +    + EM S  
Sbjct: 229 DALAKAGMVDQAYQVFEDMKQKYCVPD--AYTYTILIRMSGKTGQTYKFLSFFDEMVSRG 286

Query: 300 QLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITY 342
                  YN+VI    KN  +DK   +L +M  + C+PN  TY
Sbjct: 287 CALNLIAYNTVIEALGKNKMVDKVIFVLSKMIESDCQPNQFTY 329


>gi|297849642|ref|XP_002892702.1| hypothetical protein ARALYDRAFT_471420 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297338544|gb|EFH68961.1| hypothetical protein ARALYDRAFT_471420 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 667

 Score = 80.9 bits (198), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 65/332 (19%), Positives = 149/332 (44%), Gaps = 8/332 (2%)

Query: 98  YNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMK 157
           Y+ ++ +    G I  ++   K+M   G   S + +N L+      G+      +L+ M 
Sbjct: 208 YSTIIDSLCRDGCIDAAISLFKEMETKGIKSSLVTYNSLVGGLCKAGKWNDGVQLLKDMT 267

Query: 158 ADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYT 217
           + K+ P+V TF++L+ +   +  ++   ++Y +M    + PN ++Y  L   + +    +
Sbjct: 268 SRKIIPNVITFNVLIDVFVKEGKLQEANELYKEMITKGISPNTITYNSLMDGYCMQNRLS 327

Query: 218 VAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNV-RSKSYVLAI 276
            A   ++ + ++    +  T   LI  Y  + +  +  +++  + +   V  + +Y + +
Sbjct: 328 EANNMLDLMVRNNCSPDIVTFTSLIKGYCKVKRVDEGMKLFRKISKRGLVANTVTYSILV 387

Query: 277 EAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCK 336
           + F +  ++  AEEL+ EM S+  L     Y  ++   C NG ++KA  + +++  +   
Sbjct: 388 QGFCQSGKLEIAEELFQEMVSLGVLPDVMTYGILLDGLCDNGKLEKALEIFEDLQKSKMN 447

Query: 337 PNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGD 396
            + + Y  +  G  K   VE+ +        L  +   +   P + T   +I    +KG 
Sbjct: 448 LDIVMYTIIIEGMCKGGKVEDAW-------NLFCSLPCKGVKPNVMTYTVMISGLCKKGS 500

Query: 397 VGNAENLFEELKKANYTKYTFVYNTLIKAYVK 428
           +  A  L  ++++         YNTLI+A+++
Sbjct: 501 LSEANILLRKMEEDGNEPNDCTYNTLIRAHLR 532



 Score = 65.5 bits (158), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 94/458 (20%), Positives = 183/458 (39%), Gaps = 62/458 (13%)

Query: 45  ALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQGEKL-----FCCIPKDYQNELLYN 99
           A+++ + +IR RP  P  +D+S          G++  ++      FC   K   N + +N
Sbjct: 49  AIDLFQEMIRSRPL-PSLVDFSRFFS------GVASTKQFNLVLDFC--KKMELNGIAHN 99

Query: 100 ----NLVIACLDKGVIKLSLEY--MKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNIL 153
               N++I C  +   K    Y  + K+  LG+      FN LI       +      ++
Sbjct: 100 IYTLNIMINCFCR-CCKTCFAYSVLGKVMKLGYEPDTTTFNTLINGLCLESKVSEAVVLV 158

Query: 154 RQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVA 213
            +M  +   P+V T++ ++       +    + +   M    V+ +  +Y  +  +    
Sbjct: 159 ARMVENGCQPNVVTYNSIVNGICKSGDTSLALDLLRKMDERNVKADVFTYSTIIDSLCRD 218

Query: 214 RLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAK------GKDLERIWATVQELPNV 267
                A +  + +E     ++  T + L+   G L K      G  L +   + + +PNV
Sbjct: 219 GCIDAAISLFKEMETKGIKSSLVTYNSLV---GGLCKAGKWNDGVQLLKDMTSRKIIPNV 275

Query: 268 RSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLL 327
              ++ + I+ F +  ++  A EL+ EM +      T  YNS++  YC    + +A+ +L
Sbjct: 276 --ITFNVLIDVFVKEGKLQEANELYKEMITKGISPNTITYNSLMDGYCMQNRLSEANNML 333

Query: 328 KEMSMNGCKPNAITYRHLALGCFKSNLVEEGFK--------------------------- 360
             M  N C P+ +T+  L  G  K   V+EG K                           
Sbjct: 334 DLMVRNNCSPDIVTFTSLIKGYCKVKRVDEGMKLFRKISKRGLVANTVTYSILVQGFCQS 393

Query: 361 -ALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVY 419
             LE+  +L          P + T   +++   + G +  A  +FE+L+K+       +Y
Sbjct: 394 GKLEIAEELFQEMVSLGVLPDVMTYGILLDGLCDNGKLEKALEIFEDLQKSKMNLDIVMY 453

Query: 420 NTLIKAYVK-AKINDP-NLLRRMILGGARPDAETYSLL 455
             +I+   K  K+ D  NL   +   G +P+  TY+++
Sbjct: 454 TIIIEGMCKGGKVEDAWNLFCSLPCKGVKPNVMTYTVM 491


>gi|110289270|gb|ABG66143.1| expressed protein [Oryza sativa Japonica Group]
 gi|125575153|gb|EAZ16437.1| hypothetical protein OsJ_31906 [Oryza sativa Japonica Group]
          Length = 829

 Score = 80.5 bits (197), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 105/454 (23%), Positives = 186/454 (40%), Gaps = 35/454 (7%)

Query: 20  EGFPVHRGEIFHSI--NRLRKLQLNKRALEVMEWVIRERPYRPKELDYSYLLEFTIKNHG 77
           E   V   E  HSI  N L K      AL  ++   +E  ++P  + ++ L+   + N G
Sbjct: 228 ESCGVSPSEYSHSIIINGLCKQDKVGEALSFLQEARKEGKFKPLGMTFNILMS-ALCNWG 286

Query: 78  ISQGEKLFCCIPKDY---QNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFN 134
             Q  K F C+   Y    +   ++ L+      G ++ +L+  +++   G  +  + +N
Sbjct: 287 FVQSAKSFLCLMLKYGLVPDRYTFSTLIHGLCKVGSMEEALDLFERVTKEGMELEIVTYN 346

Query: 135 RLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRS 194
            LI      G  K IP I++ M+   V P + T+ IL+       ++E  MKV  D+   
Sbjct: 347 SLINGYRLLGLTKEIPKIIQMMRGQGVEPDLVTYTILIAGHCESGDVEEGMKVRKDVLDQ 406

Query: 195 EVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDL 254
            ++ N V+Y +L  A     ++   +  +   E    G +   +   I+++GY   G+  
Sbjct: 407 GLQLNIVTYSVLLNALFKKGMFCEIDNLLG--EIYNIGLDMDVIAYSILIHGYCKLGE-- 462

Query: 255 ERIWATVQELPNVRSKSYVL--AIEAFG----RIAQVSRAEELWLEMQSVKQLKATEQ-- 306
             I   +Q    + S   V+  ++  F        +    E  W      ++ + T+   
Sbjct: 463 --IEKALQVCNAMCSSQRVMPTSLNHFSILLGLCKKGLLVEARWYLENVARKYQPTDVVF 520

Query: 307 YNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSN---LVEEGFKALE 363
           YN VI  Y K G I  A  L  ++++ G  P  +T   L  G  K     L E  F+A++
Sbjct: 521 YNVVIDGYAKLGDIVNAVRLYDQITVAGMHPTIVTCNSLLYGYCKIGDLQLAESYFRAIQ 580

Query: 364 LGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLI 423
           L   L          P   T  ++++  +E G+V    +LF+E+           Y+ ++
Sbjct: 581 LSGLL----------PTAVTYTTLMDALSEAGEVNTMLSLFDEMVAKRIKANAVTYSVIV 630

Query: 424 KAYVKAKINDP--NLLRRMILGGARPDAETYSLL 455
           K   K    D   N+L+ M   G   D  TY+ L
Sbjct: 631 KGLCKQLRFDEAINVLKDMDSKGINADPITYNTL 664



 Score = 55.8 bits (133), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 62/220 (28%), Positives = 96/220 (43%), Gaps = 20/220 (9%)

Query: 243 ILYGYLAKGKDL---ERIWATVQE---LPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQ 296
           +LYGY   G DL   E  +  +Q    LP   + +Y   ++A     +V+    L+ EM 
Sbjct: 559 LLYGYCKIG-DLQLAESYFRAIQLSGLLPT--AVTYTTLMDALSEAGEVNTMLSLFDEMV 615

Query: 297 SVKQLKATE-QYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLV 355
           + K++KA    Y+ ++   CK    D+A  +LK+M   G   + ITY  L  G  +S  V
Sbjct: 616 A-KRIKANAVTYSVIVKGLCKQLRFDEAINVLKDMDSKGINADPITYNTLIQGFCESENV 674

Query: 356 EEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKY 415
           +  F   ++ +        R   P   T   +I +   KG V  AE L E L++      
Sbjct: 675 QMAFHIHDIML-------CRGLVPTPVTYNLLINVLCLKGKVIQAEILLESLRENGIKLR 727

Query: 416 TFVYNTLIKAYVK--AKINDPNLLRRMILGGARPDAETYS 453
            F Y TLIKA       IN   L+ +++  G     E +S
Sbjct: 728 KFAYTTLIKAQCAKGMPINAVLLVGKLLDAGFEASIEDFS 767



 Score = 40.4 bits (93), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 43/171 (25%), Positives = 70/171 (40%), Gaps = 10/171 (5%)

Query: 288 AEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNG-CKPNAITYRHLA 346
           A EL+ EM+S     +   ++ +I+  CK   + +A   L+E    G  KP  +T+  L 
Sbjct: 220 ALELFEEMESCGVSPSEYSHSIIINGLCKQDKVGEALSFLQEARKEGKFKPLGMTFNILM 279

Query: 347 LGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEE 406
                   V+     L L +K           P   T  ++I    + G +  A +LFE 
Sbjct: 280 SALCNWGFVQSAKSFLCLMLKY-------GLVPDRYTFSTLIHGLCKVGSMEEALDLFER 332

Query: 407 LKKANYTKYTFVYNTLIKAYVKAKIND--PNLLRRMILGGARPDAETYSLL 455
           + K         YN+LI  Y    +    P +++ M   G  PD  TY++L
Sbjct: 333 VTKEGMELEIVTYNSLINGYRLLGLTKEIPKIIQMMRGQGVEPDLVTYTIL 383


>gi|224118166|ref|XP_002317747.1| predicted protein [Populus trichocarpa]
 gi|222858420|gb|EEE95967.1| predicted protein [Populus trichocarpa]
          Length = 498

 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 79/308 (25%), Positives = 140/308 (45%), Gaps = 31/308 (10%)

Query: 161 VAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSY-CILATAHAVARLYTVA 219
           V P+V +F+IL+K     +++E  +KV+ +M    + PN V+Y  IL    +   L    
Sbjct: 154 VLPNVFSFNILIKALCKKNDVENALKVFDEMPTMGMIPNLVTYTTILGGFVSRGDLVNAE 213

Query: 220 ETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSK-------SY 272
           + + E  +K    +  +T  VL++  GY  +G    R+   ++ + N+          +Y
Sbjct: 214 KVFSEISDKGWLPDA-TTYTVLMV--GYCKQG----RLSDAIKVMDNMEYNGVEPNEVTY 266

Query: 273 VLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSM 332
            + I+A+ +  +   A  L  +M   K L ++     VI V C++G ++ A  L K M  
Sbjct: 267 GVMIDAYCKEKKSGEARNLIDDMLDKKFLPSSTLCCKVIDVLCEDGKVENACHLWKRMLE 326

Query: 333 NGCKP-NAITYRHLALGCFKSNLVE--EGFKALELGMKLITTKKVRSSTPWLETTLSIIE 389
             C P NAI    +   C +  + E  + F   E G           + P L T  ++I 
Sbjct: 327 KNCLPDNAIMSTLIHWLCKEGKVWEARKLFDEFEQG-----------TIPSLMTYNTLIA 375

Query: 390 IFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKI--NDPNLLRRMILGGARP 447
              E+G++  A  L++++ +       F YN LIK ++KA +      +L  M+  G  P
Sbjct: 376 GMCERGELNEAGRLWDDMVEKRCRPNAFTYNMLIKGFMKAGVVKEGVRILEEMLDNGCLP 435

Query: 448 DAETYSLL 455
           +  TY+LL
Sbjct: 436 NKSTYTLL 443



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 63/274 (22%), Positives = 125/274 (45%), Gaps = 8/274 (2%)

Query: 94  NELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNIL 153
           N   +N L+ A   K  ++ +L+   +M  +G   + + +  ++    S G       + 
Sbjct: 157 NVFSFNILIKALCKKNDVENALKVFDEMPTMGMIPNLVTYTTILGGFVSRGDLVNAEKVF 216

Query: 154 RQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVA 213
            ++      P  +T+ +LM        +   +KV  +M+ + VEPNEV+Y ++  A+   
Sbjct: 217 SEISDKGWLPDATTYTVLMVGYCKQGRLSDAIKVMDNMEYNGVEPNEVTYGVMIDAYCKE 276

Query: 214 RLYTVAETYVE-ALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQE---LPNVRS 269
           +    A   ++  L+K    ++     V+ +L     K ++   +W  + E   LP+   
Sbjct: 277 KKSGEARNLIDDMLDKKFLPSSTLCCKVIDVLCED-GKVENACHLWKRMLEKNCLPDNAI 335

Query: 270 KSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKE 329
            S +  I    +  +V  A +L+ E +    + +   YN++I+  C+ G +++A  L  +
Sbjct: 336 MSTL--IHWLCKEGKVWEARKLFDEFEQ-GTIPSLMTYNTLIAGMCERGELNEAGRLWDD 392

Query: 330 MSMNGCKPNAITYRHLALGCFKSNLVEEGFKALE 363
           M    C+PNA TY  L  G  K+ +V+EG + LE
Sbjct: 393 MVEKRCRPNAFTYNMLIKGFMKAGVVKEGVRILE 426


>gi|254939549|ref|NP_001157212.1| pentatricopeptide repeat10 [Zea mays]
 gi|218684531|gb|ACL01094.1| chloroplast pentatricopeptide repeat protein 10 [Zea mays]
 gi|223948163|gb|ACN28165.1| unknown [Zea mays]
 gi|413943497|gb|AFW76146.1| pentatricopeptide repeat10 [Zea mays]
          Length = 786

 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 98/438 (22%), Positives = 182/438 (41%), Gaps = 35/438 (7%)

Query: 36  LRKLQLNKR---ALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQGEKLFCCI---- 88
           L+ L+L+     AL ++ W  +E        D S  LE  ++  G        C +    
Sbjct: 111 LKALELSGHWEWALALLRWAGKE-----GAADAS-ALEMVVRALGREGQHDAVCALLDET 164

Query: 89  ---PKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGR 145
              P    +   Y  ++ A    G  + +LE   ++R  G + + + +N ++ +    GR
Sbjct: 165 PLPPGSRLDVRAYTTVLHALSRAGRYERALELFAELRRQGVAPTLVTYNVVLDVYGRMGR 224

Query: 146 R-KTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYC 204
               I  +L +M+A  V P   T   ++     D  ++  +  + D+K     P  V+Y 
Sbjct: 225 SWPRIVALLDEMRAAGVEPDGFTASTVIAACCRDGLVDEAVAFFEDLKARGHAPCVVTYN 284

Query: 205 ILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILY---GYLAKGKDLERIWATV 261
            L      A  YT A   +  +E++    +  T + L   Y   G+  +        A+ 
Sbjct: 285 ALLQVFGKAGNYTEALRVLGEMEQNGCQPDAVTYNELAGTYARAGFFEEAARCLDTMASK 344

Query: 262 QELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFID 321
             LPN  + +Y   + A+G + +V  A  L+ +M+    +     YN V+ +  K     
Sbjct: 345 GLLPN--AFTYNTVMTAYGNVGKVDEALALFDQMKKTGFVPNVNTYNLVLGMLGKKSRFT 402

Query: 322 KASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWL 381
               +L EMS +GC PN +T+  +   C K  + +   + LE GM+    +  R      
Sbjct: 403 VMLEMLGEMSRSGCTPNRVTWNTMLAVCGKRGMEDYVTRVLE-GMRSCGVELSR------ 455

Query: 382 ETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKIND----PNLL 437
           +T  ++I  +   G   NA  ++ E+  A +T     YN L+   V ++  D     +++
Sbjct: 456 DTYNTLIAAYGRCGSRTNAFKMYNEMTSAGFTPCITTYNALLN--VLSRQGDWSTAQSIV 513

Query: 438 RRMILGGARPDAETYSLL 455
            +M   G +P+ ++YSLL
Sbjct: 514 SKMRTKGFKPNEQSYSLL 531



 Score = 75.1 bits (183), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 77/347 (22%), Positives = 141/347 (40%), Gaps = 69/347 (19%)

Query: 87  CIPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRR 146
           C P    N + +N ++  C  +G+       ++ MR  G  +S   +N LI      G R
Sbjct: 416 CTP----NRVTWNTMLAVCGKRGMEDYVTRVLEGMRSCGVELSRDTYNTLIAAYGRCGSR 471

Query: 147 KTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCIL 206
                +  +M +    P ++T++ L+ + +   +      + S M+    +PNE SY +L
Sbjct: 472 TNAFKMYNEMTSAGFTPCITTYNALLNVLSRQGDWSTAQSIVSKMRTKGFKPNEQSYSLL 531

Query: 207 ATAHAVARLYTVAETYVEALEKSMTGN-----NWSTLDVLIILYGYLAKGKDLERIWATV 261
              +A  +   VA   + A+E  + G+     +W  L  L+I      K + L+ +    
Sbjct: 532 LQCYA--KGGNVAG--IAAIENEVYGSGAVFPSWVILRTLVIAN---FKCRRLDGMETAF 584

Query: 262 QEL------PNV-----------RSKSYVLAIEAFGRIAQ----------------VSRA 288
           QE+      P++           ++  Y  A E F  I +                 ++ 
Sbjct: 585 QEVKARGYNPDLVIFNSMLSIYAKNGMYSKATEVFDSIKRSGLSPDLITYNSLMDMYAKC 644

Query: 289 EELWLEMQSVKQLKATE-------QYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAIT 341
            E W   + + QLK ++        YN+VI+ +CK G + +A  +L EM  +G  P A+T
Sbjct: 645 SESWEAEKILNQLKCSQTMKPDVVSYNTVINGFCKQGLVKEAQRVLSEMVADGMAPCAVT 704

Query: 342 YRHLALGCFKS------------NLVEEGFKALELGMKLITTKKVRS 376
           Y H  +G + S             +V+ G K +EL  + +     R+
Sbjct: 705 Y-HTLVGGYSSLEMFSEAREVIGYMVQHGLKPMELTYRRVVESYCRA 750



 Score = 67.4 bits (163), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 79/396 (19%), Positives = 152/396 (38%), Gaps = 67/396 (16%)

Query: 99  NNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKA 158
           + ++ AC   G++  ++ + + ++  GH+   + +N L+ +    G       +L +M+ 
Sbjct: 249 STVIAACCRDGLVDEAVAFFEDLKARGHAPCVVTYNALLQVFGKAGNYTEALRVLGEMEQ 308

Query: 159 DKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTV 218
           +   P   T++ L    A     E   +    M    + PN  +Y  + TA+        
Sbjct: 309 NGCQPDAVTYNELAGTYARAGFFEEAARCLDTMASKGLLPNAFTYNTVMTAYGNVGKVDE 368

Query: 219 AETYVEALEKSMTGNNWSTLDVLIILYGYLAK--------------GKDLERI-WATV-- 261
           A    + ++K+    N +T ++++ + G  ++              G    R+ W T+  
Sbjct: 369 ALALFDQMKKTGFVPNVNTYNLVLGMLGKKSRFTVMLEMLGEMSRSGCTPNRVTWNTMLA 428

Query: 262 ------------QELPNVRS-------KSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLK 302
                       + L  +RS        +Y   I A+GR    + A +++ EM S     
Sbjct: 429 VCGKRGMEDYVTRVLEGMRSCGVELSRDTYNTLIAAYGRCGSRTNAFKMYNEMTSAGFTP 488

Query: 303 ATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSN--------- 353
               YN++++V  + G    A  ++ +M   G KPN  +Y  L L C+            
Sbjct: 489 CITTYNALLNVLSRQGDWSTAQSIVSKMRTKGFKPNEQSY-SLLLQCYAKGGNVAGIAAI 547

Query: 354 -------------------LVEEGFKALEL-GMKLITTK-KVRSSTPWLETTLSIIEIFA 392
                              LV   FK   L GM+    + K R   P L    S++ I+A
Sbjct: 548 ENEVYGSGAVFPSWVILRTLVIANFKCRRLDGMETAFQEVKARGYNPDLVIFNSMLSIYA 607

Query: 393 EKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVK 428
           + G    A  +F+ +K++  +     YN+L+  Y K
Sbjct: 608 KNGMYSKATEVFDSIKRSGLSPDLITYNSLMDMYAK 643



 Score = 59.7 bits (143), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 47/192 (24%), Positives = 79/192 (41%), Gaps = 10/192 (5%)

Query: 270 KSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNG-FIDKASGLLK 328
           ++Y   + A  R  +  RA EL+ E++          YN V+ VY + G    +   LL 
Sbjct: 175 RAYTTVLHALSRAGRYERALELFAELRRQGVAPTLVTYNVVLDVYGRMGRSWPRIVALLD 234

Query: 329 EMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSII 388
           EM   G +P+  T   +   C +  LV+E     E         K R   P + T  +++
Sbjct: 235 EMRAAGVEPDGFTASTVIAACCRDGLVDEAVAFFE-------DLKARGHAPCVVTYNALL 287

Query: 389 EIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKIND--PNLLRRMILGGAR 446
           ++F + G+   A  +  E+++         YN L   Y +A   +     L  M   G  
Sbjct: 288 QVFGKAGNYTEALRVLGEMEQNGCQPDAVTYNELAGTYARAGFFEEAARCLDTMASKGLL 347

Query: 447 PDAETYSLLKLA 458
           P+A TY+ +  A
Sbjct: 348 PNAFTYNTVMTA 359


>gi|168026089|ref|XP_001765565.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162683203|gb|EDQ69615.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 505

 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 90/355 (25%), Positives = 149/355 (41%), Gaps = 23/355 (6%)

Query: 109 GVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTF 168
           G I   ++  + M   G   +   ++ ++    S GR     +I +QM    + P   T+
Sbjct: 149 GRIDAVMKLFESMTAQGCQPNLFTYHSVMHAFGSAGRVDEACDIFQQMVQKGLQPDAVTY 208

Query: 169 HILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSY-CILATAHAVARLYTVAETYVEALE 227
           +IL+        +E   + +  + +S    NEV+Y  +L++      +  + E + +   
Sbjct: 209 NILIDAFGKTGQLE---RAFDFVGKSRSFTNEVTYNSLLSSLGRKGDIQGLMELFGQMKA 265

Query: 228 KSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSKSYVLAI----EAFGRIA 283
           K +  N   T  +LI   G+  +   +E +W    E+ +   K  ++ I    +   +  
Sbjct: 266 KGLVSNEL-TYAILIERLGWAGR---VEDVWQLYLEMVDNDIKYDIVTINNVLDCLSKAG 321

Query: 284 QVSRAEELWLEMQSVKQLKA-TEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITY 342
           +V  A EL+ +M+  K L A T  YN +I+   + G +D A  LL EM  NGC PN ITY
Sbjct: 322 RVEAAFELFQDMK-FKGLNADTVTYNILINGLGRAGKLDAAGALLLEMEENGCAPNIITY 380

Query: 343 RHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAEN 402
             L     K       +  L    +L    K R   P + +  S+IE F + G    A +
Sbjct: 381 NTLISSYGK-------WSNLSAATRLFLEMKERGVAPNVVSYSSLIEGFGKAGRTDAAIS 433

Query: 403 LFEELKKANYTKYTFVYNTLIKAYVKAKINDPNL--LRRMILGGARPDAETYSLL 455
           LF E+K          YN LI   ++A      +  LR M   G +    T SLL
Sbjct: 434 LFREMKAEGCPPNHVTYNLLIDCLIRAGRFGAAMEYLREMRDAGCQMGKVTKSLL 488



 Score = 68.6 bits (166), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 78/348 (22%), Positives = 150/348 (43%), Gaps = 21/348 (6%)

Query: 4   LPRGEPVGSAFQSWMREG-----FPVHRGEIFHSINRLRKLQLNKRALEVMEWVIRERPY 58
           + R + V   F+S   +G     F  H   + H+     ++     A ++ + ++ ++  
Sbjct: 148 IGRIDAVMKLFESMTAQGCQPNLFTYH--SVMHAFGSAGRVD---EACDIFQQMV-QKGL 201

Query: 59  RPKELDYSYLLEFTIKNHGISQGEKLFCCIPKD--YQNELLYNNLVIACLDKGVIKLSLE 116
           +P  + Y+ L++   K     Q E+ F  + K   + NE+ YN+L+ +   KG I+  +E
Sbjct: 202 QPDAVTYNILIDAFGKT---GQLERAFDFVGKSRSFTNEVTYNSLLSSLGRKGDIQGLME 258

Query: 117 YMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEA 176
              +M+  G   + L +  LI      GR + +  +  +M  + +   + T + ++   +
Sbjct: 259 LFGQMKAKGLVSNELTYAILIERLGWAGRVEDVWQLYLEMVDNDIKYDIVTINNVLDCLS 318

Query: 177 NDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWS 236
               +E   +++ DMK   +  + V+Y IL      A     A   +  +E++    N  
Sbjct: 319 KAGRVEAAFELFQDMKFKGLNADTVTYNILINGLGRAGKLDAAGALLLEMEENGCAPNII 378

Query: 237 TLDVLIILYGYLAKGKDLERIWATVQE---LPNVRSKSYVLAIEAFGRIAQVSRAEELWL 293
           T + LI  YG  +      R++  ++E    PNV S S +  IE FG+  +   A  L+ 
Sbjct: 379 TYNTLISSYGKWSNLSAATRLFLEMKERGVAPNVVSYSSL--IEGFGKAGRTDAAISLFR 436

Query: 294 EMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAIT 341
           EM++         YN +I    + G    A   L+EM   GC+   +T
Sbjct: 437 EMKAEGCPPNHVTYNLLIDCLIRAGRFGAAMEYLREMRDAGCQMGKVT 484



 Score = 68.2 bits (165), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 68/267 (25%), Positives = 127/267 (47%), Gaps = 23/267 (8%)

Query: 94  NELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNIL 153
           + + YN L+ A    G ++ + +++ K R   + ++Y   N L+   SS GR+  I  ++
Sbjct: 204 DAVTYNILIDAFGKTGQLERAFDFVGKSRSFTNEVTY---NSLL---SSLGRKGDIQGLM 257

Query: 154 R---QMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYC-ILATA 209
               QMKA  +  +  T+ IL++       +E + ++Y +M  ++++ + V+   +L   
Sbjct: 258 ELFGQMKAKGLVSNELTYAILIERLGWAGRVEDVWQLYLEMVDNDIKYDIVTINNVLDCL 317

Query: 210 HAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQEL----- 264
               R+    E + +   K   G N  T+   I++ G L +   L+   A + E+     
Sbjct: 318 SKAGRVEAAFELFQDMKFK---GLNADTVTYNILING-LGRAGKLDAAGALLLEMEENGC 373

Query: 265 -PNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKA 323
            PN+   +Y   I ++G+ + +S A  L+LEM+          Y+S+I  + K G  D A
Sbjct: 374 APNI--ITYNTLISSYGKWSNLSAATRLFLEMKERGVAPNVVSYSSLIEGFGKAGRTDAA 431

Query: 324 SGLLKEMSMNGCKPNAITYRHLALGCF 350
             L +EM   GC PN +TY +L + C 
Sbjct: 432 ISLFREMKAEGCPPNHVTY-NLLIDCL 457



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 82/397 (20%), Positives = 158/397 (39%), Gaps = 50/397 (12%)

Query: 98  YNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMK 157
           Y++++   +  G ++  L   K+M        +  FN LI   +   + +   N+   M 
Sbjct: 68  YSSMIQVFMKGGDVQNGLLMYKQMLKAKFVPDHTTFNILIDSLAKADQVEEACNVFGDMF 127

Query: 158 ADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSY-CILATAHAVARLY 216
              V+P V T+ IL++       I+ +MK++  M     +PN  +Y  ++    +  R+ 
Sbjct: 128 KLNVSPDVYTYTILIRSLGTIGRIDAVMKLFESMTAQGCQPNLFTYHSVMHAFGSAGRVD 187

Query: 217 TVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLER-------------------- 256
              + + + ++K +   +  T ++LI  +G   K   LER                    
Sbjct: 188 EACDIFQQMVQKGLQ-PDAVTYNILIDAFG---KTGQLERAFDFVGKSRSFTNEVTYNSL 243

Query: 257 ---------IWATVQELPNVRSK-------SYVLAIEAFGRIAQVSRAEELWLEMQSVKQ 300
                    I   ++    +++K       +Y + IE  G   +V    +L+LEM     
Sbjct: 244 LSSLGRKGDIQGLMELFGQMKAKGLVSNELTYAILIERLGWAGRVEDVWQLYLEMVDNDI 303

Query: 301 LKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFK 360
                  N+V+    K G ++ A  L ++M   G   + +TY  L  G  ++        
Sbjct: 304 KYDIVTINNVLDCLSKAGRVEAAFELFQDMKFKGLNADTVTYNILINGLGRAG------- 356

Query: 361 ALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYN 420
            L+    L+   +     P + T  ++I  + +  ++  A  LF E+K+         Y+
Sbjct: 357 KLDAAGALLLEMEENGCAPNIITYNTLISSYGKWSNLSAATRLFLEMKERGVAPNVVSYS 416

Query: 421 TLIKAYVKAKINDP--NLLRRMILGGARPDAETYSLL 455
           +LI+ + KA   D   +L R M   G  P+  TY+LL
Sbjct: 417 SLIEGFGKAGRTDAAISLFREMKAEGCPPNHVTYNLL 453



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 57/295 (19%), Positives = 115/295 (38%), Gaps = 21/295 (7%)

Query: 136 LIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSE 195
           ++ L  +  R   +  ++  M+ D+       F+ L+ I    + +E  ++  +   +  
Sbjct: 1   MLTLLGAARRYDDVQRLVESMQKDRTKLDTQLFNTLIHIYGEANMMEKALQTLAAFTKEG 60

Query: 196 VEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLE 255
             P   +Y  +                 + + K+    + +T ++LI     LAK   +E
Sbjct: 61  GRPTAYTYSSMIQVFMKGGDVQNGLLMYKQMLKAKFVPDHTTFNILI---DSLAKADQVE 117

Query: 256 RIWATVQEL------PNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNS 309
                  ++      P+V +  Y + I + G I ++    +L+  M +         Y+S
Sbjct: 118 EACNVFGDMFKLNVSPDVYT--YTILIRSLGTIGRIDAVMKLFESMTAQGCQPNLFTYHS 175

Query: 310 VISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLI 369
           V+  +   G +D+A  + ++M   G +P+A+TY  L     K+  +E  F  +       
Sbjct: 176 VMHAFGSAGRVDEACDIFQQMVQKGLQPDAVTYNILIDAFGKTGQLERAFDFV------- 228

Query: 370 TTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIK 424
              K RS T  + T  S++     KGD+     LF ++K          Y  LI+
Sbjct: 229 --GKSRSFTNEV-TYNSLLSSLGRKGDIQGLMELFGQMKAKGLVSNELTYAILIE 280



 Score = 38.5 bits (88), Expect = 6.6,   Method: Compositional matrix adjust.
 Identities = 35/163 (21%), Positives = 62/163 (38%), Gaps = 44/163 (26%)

Query: 295 MQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNL 354
           MQ  +    T+ +N++I +Y +   ++KA   L   +  G +P A TY            
Sbjct: 21  MQKDRTKLDTQLFNTLIHIYGEANMMEKALQTLAAFTKEGGRPTAYTYS----------- 69

Query: 355 VEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTK 414
                                          S+I++F + GDV N   +++++ KA +  
Sbjct: 70  -------------------------------SMIQVFMKGGDVQNGLLMYKQMLKAKFVP 98

Query: 415 YTFVYNTLIKAYVKAKINDP--NLLRRMILGGARPDAETYSLL 455
               +N LI +  KA   +   N+   M      PD  TY++L
Sbjct: 99  DHTTFNILIDSLAKADQVEEACNVFGDMFKLNVSPDVYTYTIL 141


>gi|297729251|ref|NP_001176989.1| Os12g0531500 [Oryza sativa Japonica Group]
 gi|255670362|dbj|BAH95717.1| Os12g0531500 [Oryza sativa Japonica Group]
          Length = 352

 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 57/215 (26%), Positives = 100/215 (46%), Gaps = 7/215 (3%)

Query: 248 LAKGKDLERIWATVQE-LPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQ 306
           L+   +L+R+W  ++E         Y   + +  R   ++ AE  + E +S    + +  
Sbjct: 134 LSDRGNLDRVWRKMRETFRKFSDTEYKCMLTSLTRFGDIAEAESFYSEWESASGTRDSRI 193

Query: 307 YNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGM 366
            N++++ Y KNG ++KA G L  +   G KP+  T+     G      ++   K LE   
Sbjct: 194 PNTILAFYIKNGMMEKAEGFLDHIVQKGVKPSYSTWELFVWGYLSDGRMD---KVLECLK 250

Query: 367 KLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAY 426
           K ++  +     P L T  +I     EKGD+  AE L    ++A Y   T +YN++++ Y
Sbjct: 251 KALSCLEKWDPNPQLAT--AIYSQIEEKGDIEAAEKLLVMFREAGYVT-TEIYNSVLRTY 307

Query: 427 VKAKINDPNLLRRMILGGARPDAETYSLLKLAEQF 461
            KA++    +  RM       D ET SLL+L  ++
Sbjct: 308 AKAELMPLIVDERMDQDKVSMDDETRSLLRLTSKY 342


>gi|297610666|ref|NP_001064867.2| Os10g0479200 [Oryza sativa Japonica Group]
 gi|255679497|dbj|BAF26781.2| Os10g0479200 [Oryza sativa Japonica Group]
          Length = 818

 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 104/454 (22%), Positives = 186/454 (40%), Gaps = 35/454 (7%)

Query: 20  EGFPVHRGEIFHSI--NRLRKLQLNKRALEVMEWVIRERPYRPKELDYSYLLEFTIKNHG 77
           E   V   E  HSI  N L K      AL  ++   +E  ++P  + ++ L+   + N G
Sbjct: 210 ESCGVSPSEYSHSIIINGLCKQDKVGEALSFLQEARKEGKFKPLGMTFNILMS-ALCNWG 268

Query: 78  ISQGEKLFCCIPKDY---QNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFN 134
             Q  K F C+   Y    +   ++ L+      G ++ +L+  +++   G  +  + +N
Sbjct: 269 FVQSAKSFLCLMLKYGLVPDRYTFSTLIHGLCKVGSMEEALDLFERVTKEGMELEIVTYN 328

Query: 135 RLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRS 194
            LI      G  K IP I++ M+   V P + T+ IL+       ++E  MKV  D+   
Sbjct: 329 SLINGYRLLGLTKEIPKIIQMMRGQGVEPDLVTYTILIAGHCESGDVEEGMKVRKDVLDQ 388

Query: 195 EVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDL 254
            ++ N V+Y +L  A     ++   +  +  +     G +   +   I+++GY   G+  
Sbjct: 389 GLQLNIVTYSVLLNALFKKGMFCEIDNLLGEIYN--IGLDMDVIAYSILIHGYCKLGE-- 444

Query: 255 ERIWATVQELPNVRSKSYVL--AIEAFG----RIAQVSRAEELWLEMQSVKQLKATEQ-- 306
             I   +Q    + S   V+  ++  F        +    E  W      ++ + T+   
Sbjct: 445 --IEKALQVCNAMCSSQRVMPTSLNHFSILLGLCKKGLLVEARWYLENVARKYQPTDVVF 502

Query: 307 YNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSN---LVEEGFKALE 363
           YN VI  Y K G I  A  L  ++++ G  P  +T   L  G  K     L E  F+A++
Sbjct: 503 YNVVIDGYAKLGDIVNAVRLYDQITVAGMHPTIVTCNSLLYGYCKIGDLQLAESYFRAIQ 562

Query: 364 LGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLI 423
           L   L          P   T  ++++  +E G+V    +LF+E+           Y+ ++
Sbjct: 563 LSGLL----------PTAVTYTTLMDALSEAGEVNTMLSLFDEMVAKRIKANAVTYSVIV 612

Query: 424 KAYVKAKINDP--NLLRRMILGGARPDAETYSLL 455
           K   K    D   N+L+ M   G   D  TY+ L
Sbjct: 613 KGLCKQLRFDEAINVLKDMDSKGINADPITYNTL 646



 Score = 55.1 bits (131), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 62/220 (28%), Positives = 96/220 (43%), Gaps = 20/220 (9%)

Query: 243 ILYGYLAKGKDL---ERIWATVQE---LPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQ 296
           +LYGY   G DL   E  +  +Q    LP   + +Y   ++A     +V+    L+ EM 
Sbjct: 541 LLYGYCKIG-DLQLAESYFRAIQLSGLLPT--AVTYTTLMDALSEAGEVNTMLSLFDEMV 597

Query: 297 SVKQLKATE-QYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLV 355
           + K++KA    Y+ ++   CK    D+A  +LK+M   G   + ITY  L  G  +S  V
Sbjct: 598 A-KRIKANAVTYSVIVKGLCKQLRFDEAINVLKDMDSKGINADPITYNTLIQGFCESENV 656

Query: 356 EEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKY 415
           +  F   ++ +        R   P   T   +I +   KG V  AE L E L++      
Sbjct: 657 QMAFHIHDIML-------CRGLVPTPVTYNLLINVLCLKGKVIQAEILLESLRENGIKLR 709

Query: 416 TFVYNTLIKAYVK--AKINDPNLLRRMILGGARPDAETYS 453
            F Y TLIKA       IN   L+ +++  G     E +S
Sbjct: 710 KFAYTTLIKAQCAKGMPINAVLLVGKLLDAGFEASIEDFS 749



 Score = 40.0 bits (92), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 43/171 (25%), Positives = 70/171 (40%), Gaps = 10/171 (5%)

Query: 288 AEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNG-CKPNAITYRHLA 346
           A EL+ EM+S     +   ++ +I+  CK   + +A   L+E    G  KP  +T+  L 
Sbjct: 202 ALELFEEMESCGVSPSEYSHSIIINGLCKQDKVGEALSFLQEARKEGKFKPLGMTFNILM 261

Query: 347 LGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEE 406
                   V+     L L +K           P   T  ++I    + G +  A +LFE 
Sbjct: 262 SALCNWGFVQSAKSFLCLMLKY-------GLVPDRYTFSTLIHGLCKVGSMEEALDLFER 314

Query: 407 LKKANYTKYTFVYNTLIKAYVKAKIND--PNLLRRMILGGARPDAETYSLL 455
           + K         YN+LI  Y    +    P +++ M   G  PD  TY++L
Sbjct: 315 VTKEGMELEIVTYNSLINGYRLLGLTKEIPKIIQMMRGQGVEPDLVTYTIL 365


>gi|359497112|ref|XP_003635427.1| PREDICTED: pentatricopeptide repeat-containing protein At5g64320,
           mitochondrial-like [Vitis vinifera]
          Length = 740

 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 113/475 (23%), Positives = 191/475 (40%), Gaps = 67/475 (14%)

Query: 17  WMREGFPVHRGEIFHSINRLRKLQLNK---------RALEVMEWVIRERPYRPKELDYSY 67
           W R   P    E+  S+ R+   QL K          ++E+ +W   ++ Y     D  Y
Sbjct: 75  WERLLKPFDLPELRTSLTRITPYQLCKLLELPLDVPTSMELFQWAGTQKGY-CHMFDVYY 133

Query: 68  LL--------EF--------TIKNHGISQGEKLFCCIPKDYQNELLYNNLVIACLD-KGV 110
           +L        EF         +K  GI   E LF  I K Y    L        LD +GV
Sbjct: 134 MLIDKLGAAGEFKTTDALLMQMKQEGIVFRESLFILIMKHYGRAGLPGQATRLLLDMRGV 193

Query: 111 IKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHI 170
                 +           SY V   +++  + P   K +PN+  +M +  ++P V TF +
Sbjct: 194 YSCEPTFR----------SYNVVLDVLLAGNCP---KVVPNVFYEMLSKGISPTVYTFGV 240

Query: 171 LMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSM 230
           +MK     + ++    +  DM R    PN + Y  L   HA++++  V E      E  +
Sbjct: 241 VMKALCLVNEVDSACALLKDMTRHGCVPNAIVYQTL--IHALSKVGRVNEVLKLLEEMLL 298

Query: 231 TGNNWSTLDVLIILYGYLAKGKDLERIWATVQEL------PNVRSKSYVLAIEAFGRIAQ 284
            G           ++G L K   +      V  +      PN  S +Y + +    R+ +
Sbjct: 299 MGCIPDVNTFNDAIHG-LCKMLRIHEAAKLVDRMLLRGFTPN--SFTYGVLMHGLCRMGK 355

Query: 285 VSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMN-GCKPNAITYR 343
           V  A  L  ++ +   +     +N++I+ Y   G +D+A  ++ E  ++ GC P+  TY 
Sbjct: 356 VDEARMLLNKVPNPNVV----LFNTLINGYVSRGRLDEAKAVMHESMLSVGCGPDIFTYN 411

Query: 344 HLALG-CFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAEN 402
            L LG C K  LV           +L+   +++   P + T   +I+ F ++G +  A N
Sbjct: 412 TLILGLCKKGYLVS--------ARELMNEMQIKGCEPNVITYTILIDRFCKEGRLEEARN 463

Query: 403 LFEELKKANYTKYTFVYNTLIKAYVK-AKINDP-NLLRRMILGGARPDAETYSLL 455
           + +E+           YN LI A  K  K+ D  N+   M   G +PD  T++ L
Sbjct: 464 VLDEMSGKGLALNAVGYNCLISALCKDEKVQDALNMFGDMSSKGCKPDIFTFNSL 518



 Score = 71.2 bits (173), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 93/408 (22%), Positives = 162/408 (39%), Gaps = 21/408 (5%)

Query: 56  RPYRPKELDYSYLLEFTIKNHGISQGEKLFCCIPKDYQNELLYNNLVIACLDKGVIKLSL 115
           R + P    Y  L+    +   + +   L   +P    N +L+N L+   + +G +  + 
Sbjct: 334 RGFTPNSFTYGVLMHGLCRMGKVDEARMLLNKVPN--PNVVLFNTLINGYVSRGRLDEAK 391

Query: 116 EYM-KKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKI 174
             M + M  +G       +N LI+     G   +   ++ +M+     P+V T+ IL+  
Sbjct: 392 AVMHESMLSVGCGPDIFTYNTLILGLCKKGYLVSARELMNEMQIKGCEPNVITYTILIDR 451

Query: 175 EANDHNIEGLMKVYSDMKRSEVEPNEVSY-CILATAHAVARLYTVAETYVEALEKSMTGN 233
              +  +E    V  +M    +  N V Y C+++   A+ +   V +      + S  G 
Sbjct: 452 FCKEGRLEEARNVLDEMSGKGLALNAVGYNCLIS---ALCKDEKVQDALNMFGDMSSKGC 508

Query: 234 NWSTLDVLIILYGYLAKGKDLERIWATVQEL----PNVRSKSYVLAIEAFGRIAQVSRAE 289
                    +++G L K    E      Q++        + +Y   I AF R   +  A 
Sbjct: 509 KPDIFTFNSLIFG-LCKVNKFEEALGLYQDMLLEGVIANTITYNTLIHAFLRRGAMQEAL 567

Query: 290 ELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGC 349
           +L  +M           YN +I   C+ G I+K   L ++M   G  PN I+   L  G 
Sbjct: 568 KLVNDMLFRGCPLDDITYNGLIKALCRAGNIEKGLALFEDMMSKGLNPNNISCNILINGL 627

Query: 350 FKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKK 409
            ++  ++    ALE    +I     R  TP + T  S+I    + G    A NLF++L+ 
Sbjct: 628 CRTGNIQH---ALEFLRDMIH----RGLTPDIVTYNSLINGLCKTGRAQEALNLFDKLQV 680

Query: 410 ANYTKYTFVYNTLIKAYVKAKINDPN--LLRRMILGGARPDAETYSLL 455
                    YNTLI  + K  + D    LL R +  G  P+  T+ +L
Sbjct: 681 EGICPDAITYNTLISWHCKEGMFDDAHLLLSRGVDSGFIPNEVTWYIL 728



 Score = 41.2 bits (95), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 56/272 (20%), Positives = 108/272 (39%), Gaps = 18/272 (6%)

Query: 94  NELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNIL 153
           N + YN L+ A      ++ +L     M   G       FN LI       + +    + 
Sbjct: 476 NAVGYNCLISALCKDEKVQDALNMFGDMSSKGCKPDIFTFNSLIFGLCKVNKFEEALGLY 535

Query: 154 RQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVA 213
           + M  + V  +  T++ L+        ++  +K+ +DM       ++++Y  L  A   A
Sbjct: 536 QDMLLEGVIANTITYNTLIHAFLRRGAMQEALKLVNDMLFRGCPLDDITYNGLIKALCRA 595

Query: 214 -RLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQEL------PN 266
             +      + + + K +  NN S      IL   L +  +++     ++++      P+
Sbjct: 596 GNIEKGLALFEDMMSKGLNPNNISC----NILINGLCRTGNIQHALEFLRDMIHRGLTPD 651

Query: 267 VRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGL 326
           +   +Y   I    +  +   A  L+ ++Q          YN++IS +CK G  D A  L
Sbjct: 652 I--VTYNSLINGLCKTGRAQEALNLFDKLQVEGICPDAITYNTLISWHCKEGMFDDAHLL 709

Query: 327 LKEMSMNGCKPNAITYRHLALGCFKSNLVEEG 358
           L     +G  PN +T+  L      SN ++EG
Sbjct: 710 LSRGVDSGFIPNEVTWYILV-----SNFIKEG 736


>gi|357460285|ref|XP_003600424.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355489472|gb|AES70675.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 393

 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 96/400 (24%), Positives = 158/400 (39%), Gaps = 66/400 (16%)

Query: 59  RPKELDYSYLLEFTIKNHGISQGEKLFCCI--PKDYQNELLYNNLVIACLDKGVIKLSLE 116
           +P  + Y+ +++   K+  +S G  L+  +   K Y + + YN L+ + L+   IK+  E
Sbjct: 36  KPDVVMYNTIIDILCKDKLVSDGCDLYSEMIDKKIYPDVVTYNTLIYSLLNFVYIKIRKE 95

Query: 117 YMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEA 176
           Y       G SI               G+ K    +L QM +  V P++ TF  L+    
Sbjct: 96  Y-------GFSI--------------LGQMKEAVGLLNQMTSKTVTPNIRTFTTLVDGLC 134

Query: 177 NDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWS 236
            D  ++    V + M +  VEPN V+Y  L   +     + V E                
Sbjct: 135 KDGEVKKARNVLAIMIKQRVEPNIVTYNSLMDGY-----FLVKE---------------- 173

Query: 237 TLDVLIILYGYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQ 296
                      + K K L    +     PNVR  SY + I    +   V  A  L+ EM 
Sbjct: 174 -----------VNKAKQLFNTISLRGMTPNVR--SYKVMINGLCKNKMVDEAANLFKEMH 220

Query: 297 SVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVE 356
           S   +  T  YNS+I   CK+  I      + EM   G   N ITY  L  G  K++ V+
Sbjct: 221 SKNMVPDTVAYNSLIDGLCKSRRIYDVWDFIGEMHDRGQPANIITYNSLLDGLCKNHQVD 280

Query: 357 EGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYT 416
           +        + L+T  K +   P + T   +++   + G + +A+ ++++L    Y    
Sbjct: 281 K-------AITLLTKIKNQGIRPNIYTYTILVDGLCKNGRLRDAQEVYQDLLNKGYQLDA 333

Query: 417 FVYNTLIKAYVKAKINDP--NLLRRMILGGARPDAETYSL 454
            +Y  +I    K    D   +LL +M      PD  TY +
Sbjct: 334 RIYTVMINGLCKEGFLDEALSLLSKMEDNKCTPDGVTYEI 373


>gi|255542890|ref|XP_002512508.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223548469|gb|EEF49960.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 444

 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 92/366 (25%), Positives = 152/366 (41%), Gaps = 54/366 (14%)

Query: 64  DYSYLLEFTIKNHGISQGEKLFCCIPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMRV 123
           D +Y + F    H IS     FC       N ++ + LV A       +L  E  K+   
Sbjct: 125 DKNYPVSFIF--HAISVSGDSFC------ANSIIVDILVWADAKNLKTRLGFEAFKRASD 176

Query: 124 LGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEG 183
            G  +S    N L+   S   +      IL++MKAD + P+  TF+IL+    ND N+  
Sbjct: 177 YGLKLSVTSCNPLM---SGLVKMYKADAILKEMKADGICPNEVTFNILIDGFCNDKNVSV 233

Query: 184 LMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLII 243
            MKV+++M R  V+PN V+Y                 + +  L  +   N  +TL     
Sbjct: 234 AMKVFAEMNRQGVKPNVVTY----------------NSLINGLCNNGKVNEATTLR---- 273

Query: 244 LYGYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKA 303
                      +++  +  E PN+ + + +L    F +   V +A EL+ +M   +    
Sbjct: 274 -----------DQMVNSCLE-PNIITHNALL--NGFCKNKMVKQAGELFEDMPKQRITPN 319

Query: 304 TEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALG-CFKSNLVEEGFKAL 362
              YN +I  YCK+  ++ A  L + M   G  P+  TY  L +G C K +L     +  
Sbjct: 320 VTTYNILIDAYCKDENMEDAFALYRIMLGKGVYPDVSTYNCLIVGLCRKGDLEGARNRVS 379

Query: 363 ELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTL 422
           E+      TK +++    L T   +++    KG++     L +E+ K         YNT+
Sbjct: 380 EMD-----TKHLKAD---LITYNILMDSLCNKGEMKKTLRLLDEMCKKGLKPSQLTYNTM 431

Query: 423 IKAYVK 428
           I  Y K
Sbjct: 432 IDGYSK 437


>gi|125532538|gb|EAY79103.1| hypothetical protein OsI_34209 [Oryza sativa Indica Group]
          Length = 479

 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 103/451 (22%), Positives = 177/451 (39%), Gaps = 77/451 (17%)

Query: 9   PVGSAFQSW-MREGFPVHRGEIFHSINRLRKLQLNKRALEVMEWVIRERPYRPKELDYSY 67
           P+    + W + E  P+ + EI   I  L + +   +AL++  W+           D + 
Sbjct: 97  PLSPVLEQWCLAEERPIAKPEIQSIIKYLCRRRRFSQALQLSMWMTERLHLHLSPGDVAN 156

Query: 68  LLEFTIKNHGISQGEKLFCCIPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHS 127
            LE   K HG+ +  + F  +P   + +  Y +L+    +   ++ + E  +KMR +G +
Sbjct: 157 RLELITKVHGLDRAVEYFDSMPDQLKQQQCYGSLLKCYAEANCVEKAEELFEKMRGMGMA 216

Query: 128 ISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKV 187
            SY                                     ++++M++   +  +E +  +
Sbjct: 217 SSY------------------------------------AYNVMMRLYLQNGQVERVHSM 240

Query: 188 YSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGY 247
           +  M+ S + P+      ++T H          T V  L K  T         L+  Y  
Sbjct: 241 HQAMEESGIVPD------VSTTH----------TLVAVLRKKKT---------LVAAYVV 275

Query: 248 LAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQY 307
               K +E     V E  N  +  Y+  I    ++  +  AE+ + E +S      +   
Sbjct: 276 AEDIKAIE----NVLEKANSCNSMYMCRIGVLLKMNDMVGAEKAYEEWESKHVYHDSRLI 331

Query: 308 NSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMK 367
           N ++  YCK G +DKA  L+ +    G  P A T   LA G FK   V    KA +L  K
Sbjct: 332 NLLVDAYCKEGLMDKAEALVDQFIKKGRMPFANTCYKLAGGYFKVGQVS---KAADLTKK 388

Query: 368 LITTKKVRSSTPW---LETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIK 424
            + +    +S  W   L   L  +  FAE+ +V  AE +   L++   T    +Y+ L+K
Sbjct: 389 ALAS----ASNEWIPDLTNVLMSLNYFAEQKNVEAAEEMASLLQRL-ITPTRDIYHGLLK 443

Query: 425 AYVKAKINDPNLLRRMILGGARPDAETYSLL 455
            YV A     +LL RM   G   D ET  +L
Sbjct: 444 TYVNAGKPVSDLLDRMKKDGMEADEETEKIL 474


>gi|302794530|ref|XP_002979029.1| hypothetical protein SELMODRAFT_109908 [Selaginella moellendorffii]
 gi|300153347|gb|EFJ19986.1| hypothetical protein SELMODRAFT_109908 [Selaginella moellendorffii]
          Length = 500

 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 81/312 (25%), Positives = 132/312 (42%), Gaps = 20/312 (6%)

Query: 152 ILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHA 211
           +L +M A    P V  F+ +M+  A  +N+E   +VY  M  S  +P+ VSY IL   H 
Sbjct: 32  VLEEMMAAGCNPDVFAFNGVMQGFARSNNMEKAREVYQHMVESGYKPDNVSYHILI--HG 89

Query: 212 VARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQEL------P 265
           +A++  + E+     E  M G   S +     L   LAK + ++   +   E+      P
Sbjct: 90  LAKIGKLDESLKILSEMVMRGQTPS-MQAYSSLVRALAKARRVDHASSLFDEMIRGGHHP 148

Query: 266 NVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASG 325
           + R   Y L I    +  +V  A E + +M           YN ++   C +G +++A+ 
Sbjct: 149 D-RLMFYEL-ILGLCQAGKVKDASERFKQMPKHGCQPNVPVYNVLLHGLCSSGQLEQANT 206

Query: 326 LLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTL 385
           L  EM  + C P+ +TY  L     K+  VEE       G KL    +     P + T  
Sbjct: 207 LFAEMKSHSCSPDVVTYNTLLDAVCKARRVEE-------GCKLFEAMRAAGYVPNVITFS 259

Query: 386 SIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAK--INDPNLLRRMILG 443
           ++I      G++  A  +F  + +A      + Y TLI    +A+  I    L  +M   
Sbjct: 260 TLIHGLCRTGELEKALEVFGSMLEAGCKPNKYTYTTLISGLCRAEKVIQARELFEKMTQA 319

Query: 444 GARPDAETYSLL 455
              PDA  Y+ L
Sbjct: 320 CIPPDAVAYNSL 331



 Score = 76.3 bits (186), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 90/418 (21%), Positives = 179/418 (42%), Gaps = 24/418 (5%)

Query: 29  IFHSINRLRKLQLNKRALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQGEKLFCCI 88
           + H + ++ KL  + + L   E V+R +   P    YS L+    K   +     LF  +
Sbjct: 86  LIHGLAKIGKLDESLKILS--EMVMRGQ--TPSMQAYSSLVRALAKARRVDHASSLFDEM 141

Query: 89  PKD--YQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRR 146
            +   + + L++  L++     G +K + E  K+M   G   +  V+N L+    S G+ 
Sbjct: 142 IRGGHHPDRLMFYELILGLCQAGKVKDASERFKQMPKHGCQPNVPVYNVLLHGLCSSGQL 201

Query: 147 KTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCIL 206
           +    +  +MK+   +P V T++ L+        +E   K++  M+ +   PN +++  L
Sbjct: 202 EQANTLFAEMKSHSCSPDVVTYNTLLDAVCKARRVEEGCKLFEAMRAAGYVPNVITFSTL 261

Query: 207 ATAHAVAR---LYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQE 263
              H + R   L    E +   LE     N ++   ++  L       +  E      Q 
Sbjct: 262 --IHGLCRTGELEKALEVFGSMLEAGCKPNKYTYTTLISGLCRAEKVIQARELFEKMTQA 319

Query: 264 LPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKAT-EQYNSVISVYCKNGFIDK 322
                + +Y   I  + +   +  AE+L+ EM     L+ T   +N++I  +CK G + +
Sbjct: 320 CIPPDAVAYNSLIAGYCKRGSMDEAEKLYREMSGGAGLQPTIVTFNTLIDGFCKLGKLGR 379

Query: 323 ASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLE 382
           A+ L+ EM   G   ++ TYR L  G  ++  ++E   ALE+       K++R     L+
Sbjct: 380 ANELVAEMGTKGLAADSCTYRILIAGLSRATKLDE---ALEV------YKQMREKKFLLD 430

Query: 383 --TTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVK-AKINDPNLL 437
             + +S +    + G++  A  +FE  +K+        +  L ++ +K  ++ D   L
Sbjct: 431 PVSCVSFVGGLCKTGNIDQAYAVFEATRKSGAVPNPETFRILSESLIKLGRVEDAQKL 488



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 81/370 (21%), Positives = 154/370 (41%), Gaps = 19/370 (5%)

Query: 94  NELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNIL 153
           N   Y++++ + + +   + S + +++M   G +     FN ++   +     +    + 
Sbjct: 9   NVFTYSSIIKSLVKEAKPEESYKVLEEMMAAGCNPDVFAFNGVMQGFARSNNMEKAREVY 68

Query: 154 RQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVA 213
           + M      P   ++HIL+   A    ++  +K+ S+M      P+  +Y  L  A A A
Sbjct: 69  QHMVESGYKPDNVSYHILIHGLAKIGKLDESLKILSEMVMRGQTPSMQAYSSLVRALAKA 128

Query: 214 RLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKG--KDLERIWATVQE---LPNVR 268
           R    A +  + + +   G++   L    ++ G    G  KD    +  + +    PNV 
Sbjct: 129 RRVDHASSLFDEMIRG--GHHPDRLMFYELILGLCQAGKVKDASERFKQMPKHGCQPNV- 185

Query: 269 SKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLK 328
              Y + +       Q+ +A  L+ EM+S         YN+++   CK   +++   L +
Sbjct: 186 -PVYNVLLHGLCSSGQLEQANTLFAEMKSHSCSPDVVTYNTLLDAVCKARRVEEGCKLFE 244

Query: 329 EMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSII 388
            M   G  PN IT+  L  G  ++  +E   KALE+   ++         P   T  ++I
Sbjct: 245 AMRAAGYVPNVITFSTLIHGLCRTGELE---KALEVFGSMLEA----GCKPNKYTYTTLI 297

Query: 389 EIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVK-AKINDPNLLRRMILGGA-- 445
                   V  A  LFE++ +A        YN+LI  Y K   +++   L R + GGA  
Sbjct: 298 SGLCRAEKVIQARELFEKMTQACIPPDAVAYNSLIAGYCKRGSMDEAEKLYREMSGGAGL 357

Query: 446 RPDAETYSLL 455
           +P   T++ L
Sbjct: 358 QPTIVTFNTL 367


>gi|147834641|emb|CAN60904.1| hypothetical protein VITISV_016343 [Vitis vinifera]
          Length = 580

 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 81/364 (22%), Positives = 148/364 (40%), Gaps = 14/364 (3%)

Query: 94  NELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNIL 153
           N + YN ++     +G I+ +   +  MRV G       +  LI      GR +    + 
Sbjct: 207 NVVSYNTIIHGYSSRGNIEGARRILDAMRVKGIEPDSYTYGSLISGMCKEGRLEEASGLF 266

Query: 154 RQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVA 213
            +M    + P+  T++ L+    N  ++E       +M +  + P+  +Y +L  A  + 
Sbjct: 267 DKMVEIGLVPNAVTYNTLIDGYCNKGDLERAFSYRDEMVKKGIMPSVSTYNLLVHALFME 326

Query: 214 RLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGK---DLERIWATVQELPNVRSK 270
                A+  ++ + K     +  T ++LI  Y      K   DL     +    P     
Sbjct: 327 GRMGEADDMIKEMRKKGIIPDAITYNILINGYSRCGNAKRAFDLHNEMLSKGIEPT--HV 384

Query: 271 SYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEM 330
           +Y   I    R  ++  A++L+ ++           +N++I  +C NG +++A  LLKEM
Sbjct: 385 TYTSLIYVLSRRNRMKEADDLFEKILDQGVSPDVIMFNAMIDGHCANGNVERAFMLLKEM 444

Query: 331 SMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEI 390
                 P+ +T+  L  G  +   VEE          L+   K R   P   +  ++I  
Sbjct: 445 DRKSVPPDEVTFNTLMQGRCREGKVEEA-------RMLLDEMKXRGIKPDHISYNTLISG 497

Query: 391 FAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKIND--PNLLRRMILGGARPD 448
           +  +GD+ +A  + +E+    +      YN LIK   K +  D    LL+ M+  G  PD
Sbjct: 498 YGRRGDIKDAFXVRDEMLSIGFNPTLLTYNALIKCLCKNQEGDLAEELLKEMVNKGISPD 557

Query: 449 AETY 452
             TY
Sbjct: 558 DSTY 561



 Score = 63.2 bits (152), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 92/393 (23%), Positives = 170/393 (43%), Gaps = 44/393 (11%)

Query: 29  IFHSINRLRKLQLNKRALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQGEKLF--- 85
           I H  +    ++  +R L+ M    R +   P    Y  L+    K   + +   LF   
Sbjct: 214 IIHGYSSRGNIEGARRILDAM----RVKGIEPDSYTYGSLISGMCKEGRLEEASGLFDKM 269

Query: 86  ---CCIPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSS 142
                +P    N + YN L+    +KG ++ +  Y  +M   G   S   +N L+     
Sbjct: 270 VEIGLVP----NAVTYNTLIDGYCNKGDLERAFSYRDEMVKKGIMPSVSTYNLLVHALFM 325

Query: 143 PGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVS 202
            GR     +++++M+   + P   T++IL+   +   N +    ++++M    +EP  V+
Sbjct: 326 EGRMGEADDMIKEMRKKGIIPDAITYNILINGYSRCGNAKRAFDLHNEMLSKGIEPTHVT 385

Query: 203 YCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLI---ILYGYLAKGKDLERIWA 259
           Y  L   + ++R   + E   +  EK +  +   + DV++   ++ G+ A G ++ER + 
Sbjct: 386 YTSL--IYVLSRRNRMKEAD-DLFEKIL--DQGVSPDVIMFNAMIDGHCANG-NVERAFM 439

Query: 260 TVQEL------PNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISV 313
            ++E+      P+    ++   ++   R  +V  A  L  EM+          YN++IS 
Sbjct: 440 LLKEMDRKSVPPD--EVTFNTLMQGRCREGKVEEARMLLDEMKXRGIKPDHISYNTLISG 497

Query: 314 YCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKK 373
           Y + G I  A  +  EM   G  P  +TY  L + C   N  +EG  A EL +K +  K 
Sbjct: 498 YGRRGDIKDAFXVRDEMLSIGFNPTLLTYNAL-IKCLCKN--QEGDLAEEL-LKEMVNKG 553

Query: 374 VRSSTPWLETTLSIIEIFAEKGDVGNAENLFEE 406
           +   +P   T LS+IE       +GN + L E+
Sbjct: 554 I---SPDDSTYLSLIE------GMGNVDTLVED 577



 Score = 53.1 bits (126), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 45/179 (25%), Positives = 83/179 (46%), Gaps = 17/179 (9%)

Query: 283 AQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITY 342
            ++ +A E    M+ +        YN++I  Y   G I+ A  +L  M + G +P++ TY
Sbjct: 187 GKLKKAREFIGFMEGLGFKPNVVSYNTIIHGYSSRGNIEGARRILDAMRVKGIEPDSYTY 246

Query: 343 RHLALGCFKSNLVEEGF----KALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVG 398
             L  G  K   +EE      K +E+G+            P   T  ++I+ +  KGD+ 
Sbjct: 247 GSLISGMCKEGRLEEASGLFDKMVEIGL-----------VPNAVTYNTLIDGYCNKGDLE 295

Query: 399 NAENLFEELKKANYTKYTFVYNTLIKA-YVKAKINDP-NLLRRMILGGARPDAETYSLL 455
            A +  +E+ K         YN L+ A +++ ++ +  ++++ M   G  PDA TY++L
Sbjct: 296 RAFSYRDEMVKKGIMPSVSTYNLLVHALFMEGRMGEADDMIKEMRKKGIIPDAITYNIL 354


>gi|10140738|gb|AAG13570.1|AC037425_1 putative membrane-associated salt-inducible protein [Oryza sativa
           Japonica Group]
          Length = 811

 Score = 80.1 bits (196), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 105/454 (23%), Positives = 186/454 (40%), Gaps = 35/454 (7%)

Query: 20  EGFPVHRGEIFHSI--NRLRKLQLNKRALEVMEWVIRERPYRPKELDYSYLLEFTIKNHG 77
           E   V   E  HSI  N L K      AL  ++   +E  ++P  + ++ L+   + N G
Sbjct: 210 ESCGVSPSEYSHSIIINGLCKQDKVGEALSFLQEARKEGKFKPLGMTFNILMS-ALCNWG 268

Query: 78  ISQGEKLFCCIPKDY---QNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFN 134
             Q  K F C+   Y    +   ++ L+      G ++ +L+  +++   G  +  + +N
Sbjct: 269 FVQSAKSFLCLMLKYGLVPDRYTFSTLIHGLCKVGSMEEALDLFERVTKEGMELEIVTYN 328

Query: 135 RLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRS 194
            LI      G  K IP I++ M+   V P + T+ IL+       ++E  MKV  D+   
Sbjct: 329 SLINGYRLLGLTKEIPKIIQMMRGQGVEPDLVTYTILIAGHCESGDVEEGMKVRKDVLDQ 388

Query: 195 EVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDL 254
            ++ N V+Y +L  A     ++   +  +   E    G +   +   I+++GY   G+  
Sbjct: 389 GLQLNIVTYSVLLNALFKKGMFCEIDNLLG--EIYNIGLDMDVIAYSILIHGYCKLGE-- 444

Query: 255 ERIWATVQELPNVRSKSYVL--AIEAFG----RIAQVSRAEELWLEMQSVKQLKATEQ-- 306
             I   +Q    + S   V+  ++  F        +    E  W      ++ + T+   
Sbjct: 445 --IEKALQVCNAMCSSQRVMPTSLNHFSILLGLCKKGLLVEARWYLENVARKYQPTDVVF 502

Query: 307 YNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSN---LVEEGFKALE 363
           YN VI  Y K G I  A  L  ++++ G  P  +T   L  G  K     L E  F+A++
Sbjct: 503 YNVVIDGYAKLGDIVNAVRLYDQITVAGMHPTIVTCNSLLYGYCKIGDLQLAESYFRAIQ 562

Query: 364 LGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLI 423
           L   L          P   T  ++++  +E G+V    +LF+E+           Y+ ++
Sbjct: 563 LSGLL----------PTAVTYTTLMDALSEAGEVNTMLSLFDEMVAKRIKANAVTYSVIV 612

Query: 424 KAYVKAKINDP--NLLRRMILGGARPDAETYSLL 455
           K   K    D   N+L+ M   G   D  TY+ L
Sbjct: 613 KGLCKQLRFDEAINVLKDMDSKGINADPITYNTL 646



 Score = 55.1 bits (131), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 62/220 (28%), Positives = 96/220 (43%), Gaps = 20/220 (9%)

Query: 243 ILYGYLAKGKDL---ERIWATVQE---LPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQ 296
           +LYGY   G DL   E  +  +Q    LP   + +Y   ++A     +V+    L+ EM 
Sbjct: 541 LLYGYCKIG-DLQLAESYFRAIQLSGLLPT--AVTYTTLMDALSEAGEVNTMLSLFDEMV 597

Query: 297 SVKQLKATE-QYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLV 355
           + K++KA    Y+ ++   CK    D+A  +LK+M   G   + ITY  L  G  +S  V
Sbjct: 598 A-KRIKANAVTYSVIVKGLCKQLRFDEAINVLKDMDSKGINADPITYNTLIQGFCESENV 656

Query: 356 EEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKY 415
           +  F   ++ +        R   P   T   +I +   KG V  AE L E L++      
Sbjct: 657 QMAFHIHDIML-------CRGLVPTPVTYNLLINVLCLKGKVIQAEILLESLRENGIKLR 709

Query: 416 TFVYNTLIKAYVK--AKINDPNLLRRMILGGARPDAETYS 453
            F Y TLIKA       IN   L+ +++  G     E +S
Sbjct: 710 KFAYTTLIKAQCAKGMPINAVLLVGKLLDAGFEASIEDFS 749



 Score = 40.0 bits (92), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 43/171 (25%), Positives = 70/171 (40%), Gaps = 10/171 (5%)

Query: 288 AEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNG-CKPNAITYRHLA 346
           A EL+ EM+S     +   ++ +I+  CK   + +A   L+E    G  KP  +T+  L 
Sbjct: 202 ALELFEEMESCGVSPSEYSHSIIINGLCKQDKVGEALSFLQEARKEGKFKPLGMTFNILM 261

Query: 347 LGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEE 406
                   V+     L L +K           P   T  ++I    + G +  A +LFE 
Sbjct: 262 SALCNWGFVQSAKSFLCLMLKY-------GLVPDRYTFSTLIHGLCKVGSMEEALDLFER 314

Query: 407 LKKANYTKYTFVYNTLIKAYVKAKIND--PNLLRRMILGGARPDAETYSLL 455
           + K         YN+LI  Y    +    P +++ M   G  PD  TY++L
Sbjct: 315 VTKEGMELEIVTYNSLINGYRLLGLTKEIPKIIQMMRGQGVEPDLVTYTIL 365


>gi|357116934|ref|XP_003560231.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g73710-like [Brachypodium distachyon]
          Length = 922

 Score = 80.1 bits (196), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 82/345 (23%), Positives = 150/345 (43%), Gaps = 15/345 (4%)

Query: 88  IPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRK 147
           +P+  +  + YN L+      G +K ++E    M V         FN +I +    GR +
Sbjct: 265 VPRKPKLVVTYNTLIALYGKAGRLKDAMEMFVDMLVYQVVPDIYTFNTMINVFGLHGRME 324

Query: 148 TIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILA 207
               +L  M    V P + T++++M + A+  ++EG++K Y  + R+ +  + VSY ++ 
Sbjct: 325 VAEALLANMVIRGVTPDIKTYNVMMTVFASMGDVEGVLKYYHQIGRTGLCADVVSYRVVL 384

Query: 208 TAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILY---GYLAKGKD-LERIWATVQE 263
                 ++   AE  +E + +S T      L V++ +Y   G+L K     ER +  ++ 
Sbjct: 385 QVLCERKMVREAEDVIEEIMQSGTCVLGQFLPVVMKMYIDQGFLDKAHVFFERHFRALE- 443

Query: 264 LPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKA 323
              V SK     I+AF        AE ++   + V   +   +YN ++  Y      D+ 
Sbjct: 444 ---VSSKIVAAIIDAFAERCLWEEAEHVFHYARGVGGKRDIVEYNVMVKAYGLAKRYDRV 500

Query: 324 SGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLET 383
           + LL+ M  +G  P+  TY  L +  F +     GF   +   KL+   K     P  ET
Sbjct: 501 TSLLENMKESGISPDECTYNSL-IQMFSAG----GFP--QRANKLLRKMKETGLKPSCET 553

Query: 384 TLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVK 428
             +II  ++       A +L+ E+K ++      VY  LI  + +
Sbjct: 554 YSAIIRTYSHSFLASEAIDLYNEMKASDVEPNVVVYGLLIDMFAE 598



 Score = 65.5 bits (158), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 79/372 (21%), Positives = 146/372 (39%), Gaps = 46/372 (12%)

Query: 118 MKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEAN 177
           ++ M+  G S     +N LI + S+ G  +    +LR+MK   + P   T+  +++  ++
Sbjct: 504 LENMKESGISPDECTYNSLIQMFSAGGFPQRANKLLRKMKETGLKPSCETYSAIIRTYSH 563

Query: 178 DHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWST 237
                  + +Y++MK S+VEPN V Y +L    A       A  Y   +E+S    N   
Sbjct: 564 SFLASEAIDLYNEMKASDVEPNVVVYGLLIDMFAETGQVEKALHYSNLMEESGITPNHIV 623

Query: 238 LDVLIILYGYLAKGKDLERIWATVQEL-----------------------------PNVR 268
           L  LI  Y  +   K+ + ++A +  +                              N+R
Sbjct: 624 LTSLIKAYSKVNCWKEAQGLYARMGNMDGGPDTIASNSMLNLYAKLGLVIEAKAIFDNLR 683

Query: 269 SK------SYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDK 322
                   SY+  +  +  +  ++ + ++  E+Q+   +   + YN+V++ Y   G + +
Sbjct: 684 RNNQADHVSYITMMFLYSNMCMLNESIKIAHELQNSSLISDHDSYNAVMACYMAKGNLRE 743

Query: 323 ASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLE 382
            + L+++M  +   PNA T+R +       N++ E    LE           ++   +L 
Sbjct: 744 CAELVQKMLEDKTFPNASTFRMIFSAVKNINILSEEVLQLESAYSDGRNSAKQAIIAFL- 802

Query: 383 TTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKINDP--NLLRRM 440
                   F+  G    A N+ E   K   T     YN   K Y      D   +L  +M
Sbjct: 803 --------FSTAGMHAAALNICEHFLKPELTIDPCAYNVAFKVYASCGEVDKAFSLFTKM 854

Query: 441 ILGGARPDAETY 452
              G +PD  TY
Sbjct: 855 HASGFKPDPVTY 866



 Score = 44.7 bits (104), Expect = 0.100,   Method: Compositional matrix adjust.
 Identities = 57/251 (22%), Positives = 99/251 (39%), Gaps = 34/251 (13%)

Query: 237 TLDVLIILYGYLAKGKDLERIWATV---QELPNVRSKSYVLAIEAFGRIAQVSRAEELWL 293
           T + LI LYG   + KD   ++  +   Q +P++ +  +   I  FG   ++  AE L  
Sbjct: 274 TYNTLIALYGKAGRLKDAMEMFVDMLVYQVVPDIYT--FNTMINVFGLHGRMEVAEALLA 331

Query: 294 EMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSN 353
            M         + YN +++V+   G ++       ++   G   + ++YR +     +  
Sbjct: 332 NMVIRGVTPDIKTYNVMMTVFASMGDVEGVLKYYHQIGRTGLCADVVSYRVVLQVLCERK 391

Query: 354 LVEEGFKALE---------LGMKLITTKKVRSSTPWLE------------------TTLS 386
           +V E    +E         LG  L    K+     +L+                     +
Sbjct: 392 MVREAEDVIEEIMQSGTCVLGQFLPVVMKMYIDQGFLDKAHVFFERHFRALEVSSKIVAA 451

Query: 387 IIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKIND--PNLLRRMILGG 444
           II+ FAE+     AE++F   +     +    YN ++KAY  AK  D   +LL  M   G
Sbjct: 452 IIDAFAERCLWEEAEHVFHYARGVGGKRDIVEYNVMVKAYGLAKRYDRVTSLLENMKESG 511

Query: 445 ARPDAETYSLL 455
             PD  TY+ L
Sbjct: 512 ISPDECTYNSL 522



 Score = 41.2 bits (95), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 20/54 (37%), Positives = 30/54 (55%), Gaps = 1/54 (1%)

Query: 307 YNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFK 360
           YN    VY   G +DKA  L  +M  +G KP+ +TY HL+  C+  + + EG +
Sbjct: 831 YNVAFKVYASCGEVDKAFSLFTKMHASGFKPDPVTYIHLST-CYGISGMSEGMR 883


>gi|296089773|emb|CBI39592.3| unnamed protein product [Vitis vinifera]
          Length = 577

 Score = 80.1 bits (196), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 84/364 (23%), Positives = 145/364 (39%), Gaps = 78/364 (21%)

Query: 94  NELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNIL 153
           N ++ + LV A +  G + L+LE   +    G  +S L  N +++     GR   + ++ 
Sbjct: 158 NSIIVDMLVWAYVKNGEMDLALEGFDRAGDYGFRLSALSCNPMLVSLVKEGRIGVVESVY 217

Query: 154 RQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVA 213
           ++M   ++  +V TF +++         +    V  DMK     P+ ++Y          
Sbjct: 218 KEMIRRRIGVNVVTFDVVINGLCKVGKFQKAGDVVEDMKAWGFSPSVITY---------- 267

Query: 214 RLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSKSYV 273
              T+ + Y +A                    G + K   L +     +  PN    ++ 
Sbjct: 268 --NTIIDGYCKA--------------------GKMFKADALLKEMVAKRIHPN--EITFN 303

Query: 274 LAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMN 333
           + I+ F R   V+ A++++ EMQ          YNS+I+  C NG +D+A GL  +MS  
Sbjct: 304 ILIDGFCRDENVTAAKKVFEEMQRQGLQPNVVTYNSLINGLCSNGKLDEALGLQDKMSGM 363

Query: 334 GCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAE 393
           G KPN +TY  L  G  K  +++E                                    
Sbjct: 364 GLKPNVVTYNALINGFCKKKMLKE------------------------------------ 387

Query: 394 KGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKA-KINDPNLLRRMILG-GARPDAET 451
                 A  + +++ K         +NTLI AY KA +++D  LLR M+L  G  P+  T
Sbjct: 388 ------AREMLDDIGKRGLAPNVITFNTLIDAYGKAGRMDDAFLLRSMMLDTGVCPNVST 441

Query: 452 YSLL 455
           Y+ L
Sbjct: 442 YNCL 445



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 82/356 (23%), Positives = 145/356 (40%), Gaps = 66/356 (18%)

Query: 116 EYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIE 175
           + ++ M+  G S S + +N +I      G+      +L++M A ++ P+  TF+IL+   
Sbjct: 250 DVVEDMKAWGFSPSVITYNTIIDGYCKAGKMFKADALLKEMVAKRIHPNEITFNILIDGF 309

Query: 176 ANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNW 235
             D N+    KV+ +M+R  ++PN V+Y  L   + +     + E     L+  M+G   
Sbjct: 310 CRDENVTAAKKVFEEMQRQGLQPNVVTYNSL--INGLCSNGKLDEAL--GLQDKMSG--- 362

Query: 236 STLDVLIILYGYLAKGKDLERIWATVQEL----------PNVRSKSYVLAIEAFGRIAQV 285
             L   ++ Y  L  G   +++    +E+          PNV   ++   I+A+G+  ++
Sbjct: 363 MGLKPNVVTYNALINGFCKKKMLKEAREMLDDIGKRGLAPNV--ITFNTLIDAYGKAGRM 420

Query: 286 SRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHL 345
             A  L   M           YN +I  +C+ G + +A  L KEM  NG K + +TY  L
Sbjct: 421 DDAFLLRSMMLDTGVCPNVSTYNCLIVGFCREGNVKEARKLAKEMEGNGLKADLVTYNIL 480

Query: 346 ALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFE 405
                                                     ++   +KG+   A  L +
Sbjct: 481 ------------------------------------------VDALCKKGETRKAVRLLD 498

Query: 406 E---LKKANYTKYTFVYNTLIKAYV-KAKINDPN-LLRRMILGGARPDAETYSLLK 456
           E   ++K         YN LIK +  K K+ + N LL  M+  G  P+  TY +L+
Sbjct: 499 EMTLMEKKGRRANIVTYNVLIKGFCNKGKLEEANRLLNEMLEKGLIPNRTTYDILR 554



 Score = 53.5 bits (127), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 77/359 (21%), Positives = 159/359 (44%), Gaps = 18/359 (5%)

Query: 10  VGSAFQSWMREGFPVHRGEIFHSINRLRKLQLNKRALEVMEWVIRERPYRPKELDYSYLL 69
           V S ++  +R    V+       IN L K+   ++A +V+E  ++   + P  + Y+ ++
Sbjct: 213 VESVYKEMIRRRIGVNVVTFDVVINGLCKVGKFQKAGDVVE-DMKAWGFSPSVITYNTII 271

Query: 70  EFTIKNHGISQGEKLF--CCIPKDYQNELLYNNLVIA-CLDKGVIKLSLEYMKKMRVLGH 126
           +   K   + + + L       + + NE+ +N L+   C D+ V   + +  ++M+  G 
Sbjct: 272 DGYCKAGKMFKADALLKEMVAKRIHPNEITFNILIDGFCRDENVTA-AKKVFEEMQRQGL 330

Query: 127 SISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMK 186
             + + +N LI    S G+      +  +M    + P+V T++ L+        ++   +
Sbjct: 331 QPNVVTYNSLINGLCSNGKLDEALGLQDKMSGMGLKPNVVTYNALINGFCKKKMLKEARE 390

Query: 187 VYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYG 246
           +  D+ +  + PN +++  L  A+  A     A      +  +    N ST + LI+  G
Sbjct: 391 MLDDIGKRGLAPNVITFNTLIDAYGKAGRMDDAFLLRSMMLDTGVCPNVSTYNCLIV--G 448

Query: 247 YLAKGKDLE-RIWATVQELPNVRSK--SYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKA 303
           +  +G   E R  A   E   +++   +Y + ++A  +  +  +A  L  EM  +++   
Sbjct: 449 FCREGNVKEARKLAKEMEGNGLKADLVTYNILVDALCKKGETRKAVRLLDEMTLMEKKGR 508

Query: 304 TEQ---YNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGF 359
                 YN +I  +C  G +++A+ LL EM   G  PN  TY  L     +  ++E+GF
Sbjct: 509 RANIVTYNVLIKGFCNKGKLEEANRLLNEMLEKGLIPNRTTYDIL-----RDEMMEKGF 562


>gi|15233142|ref|NP_191058.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75210358|sp|Q9SV46.1|PP282_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g54980, mitochondrial; Flags: Precursor
 gi|4678295|emb|CAB41086.1| putative protein [Arabidopsis thaliana]
 gi|28393168|gb|AAO42016.1| unknown protein [Arabidopsis thaliana]
 gi|332645801|gb|AEE79322.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 851

 Score = 80.1 bits (196), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 92/356 (25%), Positives = 157/356 (44%), Gaps = 22/356 (6%)

Query: 109 GVIKLSLEYMKKMRVLGHSISYLVFN-RLIILNSSPGRRKTIPNILRQMKADKVAPHVST 167
           G ++ +LE+ KKM VLG + S  VF+   II     G++      L     +    +V  
Sbjct: 388 GEMEKALEFYKKMEVLGLTPS--VFHVHTIIQGWLKGQKHEEALKLFDESFETGLANVFV 445

Query: 168 FHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAE-TYVEAL 226
            + ++         +   ++ S M+   + PN VSY  +   H   +   +A   +   L
Sbjct: 446 CNTILSWLCKQGKTDEATELLSKMESRGIGPNVVSYNNVMLGHCRQKNMDLARIVFSNIL 505

Query: 227 EKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPN----VRSKSYVLAIEAFGRI 282
           EK +  NN++      IL     +  D +     V  + +    V    Y   I    ++
Sbjct: 506 EKGLKPNNYT----YSILIDGCFRNHDEQNALEVVNHMTSSNIEVNGVVYQTIINGLCKV 561

Query: 283 AQVSRAEELWLEMQSVKQLKAT-EQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAIT 341
            Q S+A EL   M   K+L  +   YNS+I  + K G +D A    +EM  NG  PN IT
Sbjct: 562 GQTSKARELLANMIEEKRLCVSCMSYNSIIDGFFKEGEMDSAVAAYEEMCGNGISPNVIT 621

Query: 342 YRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAE 401
           Y  L  G  K+N +++   ALE+  ++   K V+   P      ++I+ F ++ ++ +A 
Sbjct: 622 YTSLMNGLCKNNRMDQ---ALEMRDEM-KNKGVKLDIPAYG---ALIDGFCKRSNMESAS 674

Query: 402 NLFEELKKANYTKYTFVYNTLIKAY--VKAKINDPNLLRRMILGGARPDAETYSLL 455
            LF EL +        +YN+LI  +  +   +   +L ++M+  G R D  TY+ L
Sbjct: 675 ALFSELLEEGLNPSQPIYNSLISGFRNLGNMVAALDLYKKMLKDGLRCDLGTYTTL 730



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 76/348 (21%), Positives = 139/348 (39%), Gaps = 48/348 (13%)

Query: 146 RKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSY-C 204
           R    NIL +     + P+  T+ IL+     +H+ +  ++V + M  S +E N V Y  
Sbjct: 498 RIVFSNILEK----GLKPNNYTYSILIDGCFRNHDEQNALEVVNHMTSSNIEVNGVVYQT 553

Query: 205 ILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQEL 264
           I+     V +     E     +E+       S +    I+ G+  +G +++   A  +E+
Sbjct: 554 IINGLCKVGQTSKARELLANMIEEKRLC--VSCMSYNSIIDGFFKEG-EMDSAVAAYEEM 610

Query: 265 ------PNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNG 318
                 PNV   +Y   +    +  ++ +A E+  EM++         Y ++I  +CK  
Sbjct: 611 CGNGISPNV--ITYTSLMNGLCKNNRMDQALEMRDEMKNKGVKLDIPAYGALIDGFCKRS 668

Query: 319 FIDKASGLLKEMSMNGCKPNAITYRHL------------ALGCFKSNLVEEGFKA----- 361
            ++ AS L  E+   G  P+   Y  L            AL  +K  ++++G +      
Sbjct: 669 NMESASALFSELLEEGLNPSQPIYNSLISGFRNLGNMVAALDLYKK-MLKDGLRCDLGTY 727

Query: 362 ------------LELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKK 409
                       L L  +L T  +     P       I+   ++KG       +FEE+KK
Sbjct: 728 TTLIDGLLKDGNLILASELYTEMQAVGLVPDEIIYTVIVNGLSKKGQFVKVVKMFEEMKK 787

Query: 410 ANYTKYTFVYNTLIKA-YVKAKINDP-NLLRRMILGGARPDAETYSLL 455
            N T    +YN +I   Y +  +++   L   M+  G  PD  T+ +L
Sbjct: 788 NNVTPNVLIYNAVIAGHYREGNLDEAFRLHDEMLDKGILPDGATFDIL 835



 Score = 45.4 bits (106), Expect = 0.059,   Method: Compositional matrix adjust.
 Identities = 43/162 (26%), Positives = 74/162 (45%), Gaps = 12/162 (7%)

Query: 272 YVLAIEAFGRIAQVSRAEELWLEMQSVKQ-LKATEQYNSVISVYCKNGFIDKASGLLKEM 330
           Y LA++A  +   ++ A  L  EM+  K  + + E Y SVI    K G +D A  L  EM
Sbjct: 271 YSLAVQACCKTLDLAMANSLLREMKEKKLCVPSQETYTSVILASVKQGNMDDAIRLKDEM 330

Query: 331 SMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLET-TLSI-I 388
             +G   N +    L  G  K+N         +L   L+   K+    P   + T S+ I
Sbjct: 331 LSDGISMNVVAATSLITGHCKNN---------DLVSALVLFDKMEKEGPSPNSVTFSVLI 381

Query: 389 EIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAK 430
           E F + G++  A   +++++    T   F  +T+I+ ++K +
Sbjct: 382 EWFRKNGEMEKALEFYKKMEVLGLTPSVFHVHTIIQGWLKGQ 423



 Score = 45.1 bits (105), Expect = 0.078,   Method: Compositional matrix adjust.
 Identities = 59/318 (18%), Positives = 131/318 (41%), Gaps = 16/318 (5%)

Query: 53  IRERPYRPKELDYSYLLEFTIKNHGISQGEKLFCCIPKDYQNELLYNNLVIACLDKGVIK 112
           I E+  +P    YS L++   +NH     +     +     + +  N +V   +  G+ K
Sbjct: 504 ILEKGLKPNNYTYSILIDGCFRNH---DEQNALEVVNHMTSSNIEVNGVVYQTIINGLCK 560

Query: 113 LSLEYMKKMRVLGHSI-------SYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHV 165
           +  +  K   +L + I       S + +N +I      G   +      +M  + ++P+V
Sbjct: 561 VG-QTSKARELLANMIEEKRLCVSCMSYNSIIDGFFKEGEMDSAVAAYEEMCGNGISPNV 619

Query: 166 STFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAV-ARLYTVAETYVE 224
            T+  LM     ++ ++  +++  +MK   V+ +  +Y  L       + + + +  + E
Sbjct: 620 ITYTSLMNGLCKNNRMDQALEMRDEMKNKGVKLDIPAYGALIDGFCKRSNMESASALFSE 679

Query: 225 ALEKSMTGNN--WSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRI 282
            LE+ +  +   +++L       G +    DL +    +++       +Y   I+   + 
Sbjct: 680 LLEEGLNPSQPIYNSLISGFRNLGNMVAALDLYK--KMLKDGLRCDLGTYTTLIDGLLKD 737

Query: 283 AQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITY 342
             +  A EL+ EMQ+V  +     Y  +++   K G   K   + +EM  N   PN + Y
Sbjct: 738 GNLILASELYTEMQAVGLVPDEIIYTVIVNGLSKKGQFVKVVKMFEEMKKNNVTPNVLIY 797

Query: 343 RHLALGCFKSNLVEEGFK 360
             +  G ++   ++E F+
Sbjct: 798 NAVIAGHYREGNLDEAFR 815


>gi|357499971|ref|XP_003620274.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355495289|gb|AES76492.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 498

 Score = 80.1 bits (196), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 75/329 (22%), Positives = 149/329 (45%), Gaps = 24/329 (7%)

Query: 144 GRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSY 203
           G+ +    +LR++    V P+V  ++ ++        +     +YS+M    + P+ V+Y
Sbjct: 157 GQARAALQLLRRVDGKLVQPNVVMYNTIIDSMCKVKLVNEAFDLYSEMVSEGISPDVVTY 216

Query: 204 CILATAH-AVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQ 262
             L +    V +L    + + + + +++  + + T ++L+  +    K K+ + ++A + 
Sbjct: 217 SALISGFFIVGKLKDAIDLFNKMILENIKPDVY-TFNILVDGFCKDGKMKEGKTVFAMMM 275

Query: 263 EL---PNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGF 319
           +    PNV +  Y   ++ +  + QV++A  ++  M        T+ YN +I+ +CK   
Sbjct: 276 KQGIKPNVVT--YCSLMDGYCLVKQVNKANSIFNTMAQGGVNPDTQSYNIMINGFCKIKK 333

Query: 320 IDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTP 379
           +D+A  L K+M      PN +TY  L  G  KS         +   +KL+     R   P
Sbjct: 334 VDEAMNLFKKMHCKNIIPNVVTYTSLIDGLCKSG-------KISYALKLVDEMHDRGVPP 386

Query: 380 WLETTLSIIEIFAEKGDVGNA--------ENLFEELKKANYTKYTFVYNTLIKAY-VKAK 430
            + T  SI++   +   V  A        + +FE+L    Y    + Y  +I+ + VK  
Sbjct: 387 DIITYSSILDALCKNHQVDKAIALLTKLKDQVFEDLFVKGYNLDVYAYTVMIQGFCVKGL 446

Query: 431 INDP-NLLRRMILGGARPDAETYSLLKLA 458
            N+   LL +M   G  PDA+TY ++ L+
Sbjct: 447 FNEALALLSKMEDNGRIPDAKTYEIIILS 475



 Score = 39.3 bits (90), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 41/184 (22%), Positives = 78/184 (42%), Gaps = 9/184 (4%)

Query: 274 LAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMN 333
           L+   F  I +      +      +K L     Y ++I+  CK G    A  LL+ +   
Sbjct: 113 LSFSVFANILKKGYDPNVITLTTLIKGLCLKVSYGTLINGLCKVGQARAALQLLRRVDGK 172

Query: 334 GCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAE 393
             +PN + Y  +     K  LV E F   +L  ++++       +P + T  ++I  F  
Sbjct: 173 LVQPNVVMYNTIIDSMCKVKLVNEAF---DLYSEMVS----EGISPDVVTYSALISGFFI 225

Query: 394 KGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVK-AKINDPNLLRRMIL-GGARPDAET 451
            G + +A +LF ++   N     + +N L+  + K  K+ +   +  M++  G +P+  T
Sbjct: 226 VGKLKDAIDLFNKMILENIKPDVYTFNILVDGFCKDGKMKEGKTVFAMMMKQGIKPNVVT 285

Query: 452 YSLL 455
           Y  L
Sbjct: 286 YCSL 289


>gi|334182516|ref|NP_172730.3| helicase domain and pentatricopeptide repeat-containing protein
           [Arabidopsis thaliana]
 gi|332190794|gb|AEE28915.1| helicase domain and pentatricopeptide repeat-containing protein
           [Arabidopsis thaliana]
          Length = 735

 Score = 80.1 bits (196), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 65/332 (19%), Positives = 147/332 (44%), Gaps = 8/332 (2%)

Query: 98  YNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMK 157
           Y+ ++ +    G I  ++   K+M   G   S + +N L+      G+      +L+ M 
Sbjct: 231 YSTIIDSLCRDGCIDAAISLFKEMETKGIKSSVVTYNSLVRGLCKAGKWNDGALLLKDMV 290

Query: 158 ADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYT 217
           + ++ P+V TF++L+ +   +  ++   ++Y +M    + PN ++Y  L   + +    +
Sbjct: 291 SREIVPNVITFNVLLDVFVKEGKLQEANELYKEMITRGISPNIITYNTLMDGYCMQNRLS 350

Query: 218 VAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNV-RSKSYVLAI 276
            A   ++ + ++    +  T   LI  Y  + +  D  +++  + +   V  + +Y + +
Sbjct: 351 EANNMLDLMVRNKCSPDIVTFTSLIKGYCMVKRVDDGMKVFRNISKRGLVANAVTYSILV 410

Query: 277 EAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCK 336
           + F +  ++  AEEL+ EM S   L     Y  ++   C NG ++KA  + +++  +   
Sbjct: 411 QGFCQSGKIKLAEELFQEMVSHGVLPDVMTYGILLDGLCDNGKLEKALEIFEDLQKSKMD 470

Query: 337 PNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGD 396
              + Y  +  G  K   VE+ +        L  +   +   P + T   +I    +KG 
Sbjct: 471 LGIVMYTTIIEGMCKGGKVEDAW-------NLFCSLPCKGVKPNVMTYTVMISGLCKKGS 523

Query: 397 VGNAENLFEELKKANYTKYTFVYNTLIKAYVK 428
           +  A  L  ++++         YNTLI+A+++
Sbjct: 524 LSEANILLRKMEEDGNAPNDCTYNTLIRAHLR 555



 Score = 61.6 bits (148), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 46/187 (24%), Positives = 89/187 (47%), Gaps = 9/187 (4%)

Query: 271 SYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEM 330
           +Y   +    R    S A +L  +M+          Y+++I   C++G ID A  L KEM
Sbjct: 195 TYNSIVNGICRSGDTSLALDLLRKMEERNVKADVFTYSTIIDSLCRDGCIDAAISLFKEM 254

Query: 331 SMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEI 390
              G K + +TY  L  G  K+    +G     L +K + ++++    P + T   ++++
Sbjct: 255 ETKGIKSSVVTYNSLVRGLCKAGKWNDG----ALLLKDMVSREI---VPNVITFNVLLDV 307

Query: 391 FAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAY-VKAKINDP-NLLRRMILGGARPD 448
           F ++G +  A  L++E+     +     YNTL+  Y ++ ++++  N+L  M+     PD
Sbjct: 308 FVKEGKLQEANELYKEMITRGISPNIITYNTLMDGYCMQNRLSEANNMLDLMVRNKCSPD 367

Query: 449 AETYSLL 455
             T++ L
Sbjct: 368 IVTFTSL 374



 Score = 60.1 bits (144), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 68/321 (21%), Positives = 130/321 (40%), Gaps = 43/321 (13%)

Query: 94  NELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNIL 153
           N + +N L+   + +G ++ + E  K+M   G S + + +N L+       R     N+L
Sbjct: 297 NVITFNVLLDVFVKEGKLQEANELYKEMITRGISPNIITYNTLMDGYCMQNRLSEANNML 356

Query: 154 RQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVA 213
             M  +K +P + TF  L+K       ++  MKV+ ++ +  +  N V+Y IL      +
Sbjct: 357 DLMVRNKCSPDIVTFTSLIKGYCMVKRVDDGMKVFRNISKRGLVANAVTYSILVQGFCQS 416

Query: 214 RLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSKSYV 273
               +AE   + +                + +G                 LP+V   +Y 
Sbjct: 417 GKIKLAEELFQEM----------------VSHGV----------------LPDV--MTYG 442

Query: 274 LAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMN 333
           + ++      ++ +A E++ ++Q  K       Y ++I   CK G ++ A  L   +   
Sbjct: 443 ILLDGLCDNGKLEKALEIFEDLQKSKMDLGIVMYTTIIEGMCKGGKVEDAWNLFCSLPCK 502

Query: 334 GCKPNAITYRHLALG-CFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFA 392
           G KPN +TY  +  G C K +L E           L+   +   + P   T  ++I    
Sbjct: 503 GVKPNVMTYTVMISGLCKKGSLSEANI--------LLRKMEEDGNAPNDCTYNTLIRAHL 554

Query: 393 EKGDVGNAENLFEELKKANYT 413
             GD+  +  L EE+K   ++
Sbjct: 555 RDGDLTASAKLIEEMKSCGFS 575



 Score = 53.1 bits (126), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 56/273 (20%), Positives = 111/273 (40%), Gaps = 43/273 (15%)

Query: 185 MKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIIL 244
           + ++ +M RS   P+ V +    +A A  + + +   + + LE +   +N  TL+++I  
Sbjct: 73  IALFQEMIRSRPLPSLVDFSRFFSAIARTKQFNLVLDFCKQLELNGIAHNIYTLNIMINC 132

Query: 245 YGYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKAT 304
           +                      R      A    G++ ++    +             T
Sbjct: 133 F---------------------CRCCKTCFAYSVLGKVMKLGYEPD-------------T 158

Query: 305 EQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALEL 364
             +N++I      G + +A  L+  M  NGC+P+ +TY  +  G  +S           L
Sbjct: 159 TTFNTLIKGLFLEGKVSEAVVLVDRMVENGCQPDVVTYNSIVNGICRSG-------DTSL 211

Query: 365 GMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIK 424
            + L+   + R+    + T  +II+     G +  A +LF+E++          YN+L++
Sbjct: 212 ALDLLRKMEERNVKADVFTYSTIIDSLCRDGCIDAAISLFKEMETKGIKSSVVTYNSLVR 271

Query: 425 AYVKA-KINDPN-LLRRMILGGARPDAETYSLL 455
              KA K ND   LL+ M+     P+  T+++L
Sbjct: 272 GLCKAGKWNDGALLLKDMVSREIVPNVITFNVL 304



 Score = 52.4 bits (124), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 90/457 (19%), Positives = 182/457 (39%), Gaps = 58/457 (12%)

Query: 10  VGSAFQSWMREGFPVHRGEIFHSINRLRKLQLNKR---ALEVMEWVIRERPYRPKELDYS 66
           + S F S  R+   +  G +     RLR   ++ +   A+ + + +IR RP  P  +D+S
Sbjct: 35  ISSFFSSCERDFSSISNGNVCFR-ERLRSGIVDIKKDDAIALFQEMIRSRPL-PSLVDFS 92

Query: 67  YLLEFTIKNHGISQGEKLFCCIPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGH 126
                           + F  I +  Q                   L L++ K++ + G 
Sbjct: 93  ----------------RFFSAIARTKQ-----------------FNLVLDFCKQLELNG- 118

Query: 127 SISYLVFNRLIILNSSPGRRKTI--PNILRQMKADKVAPHVSTFHILMKIEANDHNIEGL 184
            I++ ++   I++N      KT    ++L ++      P  +TF+ L+K    +  +   
Sbjct: 119 -IAHNIYTLNIMINCFCRCCKTCFAYSVLGKVMKLGYEPDTTTFNTLIKGLFLEGKVSEA 177

Query: 185 MKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIIL 244
           + +   M  +  +P+ V+Y  +      +   ++A   +  +E+     +  T   +I  
Sbjct: 178 VVLVDRMVENGCQPDVVTYNSIVNGICRSGDTSLALDLLRKMEERNVKADVFTYSTII-- 235

Query: 245 YGYLAKGKDLERIWATVQELPNVRSKSYVLA----IEAFGRIAQVSRAEELWLEMQSVKQ 300
              L +   ++   +  +E+     KS V+     +    +  + +    L  +M S + 
Sbjct: 236 -DSLCRDGCIDAAISLFKEMETKGIKSSVVTYNSLVRGLCKAGKWNDGALLLKDMVSREI 294

Query: 301 LKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFK 360
           +     +N ++ V+ K G + +A+ L KEM   G  PN ITY  L  G    N + E   
Sbjct: 295 VPNVITFNVLLDVFVKEGKLQEANELYKEMITRGISPNIITYNTLMDGYCMQNRLSEANN 354

Query: 361 ALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYN 420
            L+L ++          +P + T  S+I+ +     V +   +F  + K         Y+
Sbjct: 355 MLDLMVR-------NKCSPDIVTFTSLIKGYCMVKRVDDGMKVFRNISKRGLVANAVTYS 407

Query: 421 TLIKAYVKA-KIN-DPNLLRRMILGGARPDAETYSLL 455
            L++ + ++ KI     L + M+  G  PD  TY +L
Sbjct: 408 ILVQGFCQSGKIKLAEELFQEMVSHGVLPDVMTYGIL 444


>gi|226509112|ref|NP_001141010.1| uncharacterized protein LOC100273089 [Zea mays]
 gi|194702156|gb|ACF85162.1| unknown [Zea mays]
 gi|413937351|gb|AFW71902.1| hypothetical protein ZEAMMB73_497690 [Zea mays]
          Length = 567

 Score = 80.1 bits (196), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 83/364 (22%), Positives = 154/364 (42%), Gaps = 16/364 (4%)

Query: 98  YNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMK 157
           YN L+     +G    +L  ++ M   G     + +  L+         K    +L +M 
Sbjct: 169 YNTLIRGLCGRGRTSNALAVLEDMFRRGCLPDVVTYTILLEATCKRSGYKQAMKLLDEMH 228

Query: 158 ADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYT 217
               AP + T+++++     +  +E  M+   ++     EPN VSY I+      A  + 
Sbjct: 229 DKGCAPDIVTYNVVLNGICQEGRVEDAMEFLKNLPSYGCEPNTVSYNIVLKGLFTAERWE 288

Query: 218 VAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELP----NVRSKSYV 273
            AE  +E +       N  T ++LI    +L +   +E     ++++P       S SY 
Sbjct: 289 DAEKLMEEMAHKGCPPNVVTFNMLI---SFLCRRGLVEPAMEVLEQMPQYGCTPNSLSYN 345

Query: 274 LAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMN 333
             + AF +  ++ +A E    M S         YN++++  C+NG +D A  LL ++   
Sbjct: 346 PLLHAFCKQKKIHKAMEFVELMVSRGCYPDIVSYNTLLTALCRNGEVDVAIELLHQLKDK 405

Query: 334 GCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAE 393
           GC P  I+Y  +  G  K+   +E   ALEL +  +T+K ++   P + T  +I      
Sbjct: 406 GCSPVLISYNTVIDGLTKAGKTKE---ALEL-LDEMTSKGLQ---PDIITYSTIASGLCR 458

Query: 394 KGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAK--INDPNLLRRMILGGARPDAET 451
           +  +  A   F +++         +YN ++    K +   N  +L   MI  G  P+  T
Sbjct: 459 EDRIEEAVRTFCKVQDMGIRPTAALYNAILLGLCKRRETHNAIDLFAYMISSGCMPNEST 518

Query: 452 YSLL 455
           Y++L
Sbjct: 519 YTIL 522



 Score = 65.1 bits (157), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 77/322 (23%), Positives = 132/322 (40%), Gaps = 45/322 (13%)

Query: 45  ALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQGEKLF------CCIPKDYQNELLY 98
           AL V+E + R R   P  + Y+ LLE T K  G  Q  KL        C P    + + Y
Sbjct: 185 ALAVLEDMFR-RGCLPDVVTYTILLEATCKRSGYKQAMKLLDEMHDKGCAP----DIVTY 239

Query: 99  NNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKA 158
           N ++     +G ++ ++E++K +   G   + + +N ++    +  R +    ++ +M  
Sbjct: 240 NVVLNGICQEGRVEDAMEFLKNLPSYGCEPNTVSYNIVLKGLFTAERWEDAEKLMEEMAH 299

Query: 159 DKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTV 218
               P+V TF++L+        +E  M+V   M +    PN +SY  L  A    +    
Sbjct: 300 KGCPPNVVTFNMLISFLCRRGLVEPAMEVLEQMPQYGCTPNSLSYNPLLHAFCKQKKIHK 359

Query: 219 AETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSKSYVLAIEA 278
           A  +VE                L++  G                  P++   SY   + A
Sbjct: 360 AMEFVE----------------LMVSRGCY----------------PDI--VSYNTLLTA 385

Query: 279 FGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPN 338
             R  +V  A EL  +++          YN+VI    K G   +A  LL EM+  G +P+
Sbjct: 386 LCRNGEVDVAIELLHQLKDKGCSPVLISYNTVIDGLTKAGKTKEALELLDEMTSKGLQPD 445

Query: 339 AITYRHLALGCFKSNLVEEGFK 360
            ITY  +A G  + + +EE  +
Sbjct: 446 IITYSTIASGLCREDRIEEAVR 467



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 50/197 (25%), Positives = 87/197 (44%), Gaps = 11/197 (5%)

Query: 264 LPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKA 323
           LP+V   +Y + +EA  + +   +A +L  EM           YN V++  C+ G ++ A
Sbjct: 198 LPDV--VTYTILLEATCKRSGYKQAMKLLDEMHDKGCAPDIVTYNVVLNGICQEGRVEDA 255

Query: 324 SGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLET 383
              LK +   GC+PN ++Y  +  G F +   E+  K +E           +   P + T
Sbjct: 256 MEFLKNLPSYGCEPNTVSYNIVLKGLFTAERWEDAEKLME-------EMAHKGCPPNVVT 308

Query: 384 TLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKA-KINDP-NLLRRMI 441
              +I     +G V  A  + E++ +   T  +  YN L+ A+ K  KI+     +  M+
Sbjct: 309 FNMLISFLCRRGLVEPAMEVLEQMPQYGCTPNSLSYNPLLHAFCKQKKIHKAMEFVELMV 368

Query: 442 LGGARPDAETYSLLKLA 458
             G  PD  +Y+ L  A
Sbjct: 369 SRGCYPDIVSYNTLLTA 385


>gi|42570837|ref|NP_973492.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|119935915|gb|ABM06033.1| At2g20710 [Arabidopsis thaliana]
 gi|330251966|gb|AEC07060.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 395

 Score = 80.1 bits (196), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 72/301 (23%), Positives = 135/301 (44%), Gaps = 14/301 (4%)

Query: 56  RPYRPKELDYSYLLEFTIKNHGISQGEKLFCCIPKDYQNELLYNNLVIACLDKGVIKLSL 115
           R +   E D +  L+   K  G+ + EK F  IP + +N  LY  L+     K V+  + 
Sbjct: 5   RVHEISEGDVAIRLDLIAKVGGLGEAEKFFETIPMERRNYHLYGALLNCYASKKVLHKAE 64

Query: 116 EYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIE 175
           +  ++M+ LG     L +N ++ L    G+   +  +LR+M+ + V P + T +  +   
Sbjct: 65  QVFQEMKELGFLKGCLPYNVMLNLYVRTGKYTMVEKLLREMEDETVKPDIFTVNTRLHAY 124

Query: 176 ANDHNIEGLMKVYSDMKRSEVEP----NEVSYCILATAHAVARLYTVAETYVEALEKSMT 231
           +   ++EG+ K    + R E +     +  +Y   A  +  A L    E  +E L KS  
Sbjct: 125 SVVSDVEGMEKF---LMRCEADQGLHLDWRTYADTANGYIKAGL---TEKALEMLRKSEQ 178

Query: 232 GNNWS----TLDVLIILYGYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSR 287
             N        +VL+  YG   K +++ R+W+  +EL    +  Y+  I A  ++  +  
Sbjct: 179 MVNAQKRKHAYEVLMSFYGAAGKKEEVYRLWSLYKELDGFYNTGYISVISALLKMDDIEE 238

Query: 288 AEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLAL 347
            E++  E ++   L      + +I+ YCK G ++KA  ++  +       +  T+  LAL
Sbjct: 239 VEKIMEEWEAGHSLFDIRIPHLLITGYCKKGMMEKAEEVVNILVQKWRVEDTSTWERLAL 298

Query: 348 G 348
           G
Sbjct: 299 G 299


>gi|15231863|ref|NP_190938.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75174107|sp|Q9LFF1.1|PP281_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g53700, chloroplastic; AltName: Full=Protein MATERNAL
           EFFECT EMBRYO ARREST 40; Flags: Precursor
 gi|6729521|emb|CAB67677.1| putative protein [Arabidopsis thaliana]
 gi|15982931|gb|AAL09812.1| AT3g53700/F4P12_400 [Arabidopsis thaliana]
 gi|332645608|gb|AEE79129.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 754

 Score = 80.1 bits (196), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 77/316 (24%), Positives = 142/316 (44%), Gaps = 10/316 (3%)

Query: 98  YNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMK 157
           YN+++      G +K ++E + +M     S + + +N LI       + +    + R + 
Sbjct: 333 YNSVISGLCKLGEVKEAVEVLDQMITRDCSPNTVTYNTLISTLCKENQVEEATELARVLT 392

Query: 158 ADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYT 217
           +  + P V TF+ L++      N    M+++ +M+    EP+E +Y +L  +        
Sbjct: 393 SKGILPDVCTFNSLIQGLCLTRNHRVAMELFEEMRSKGCEPDEFTYNMLIDSLCSKGKLD 452

Query: 218 VAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVR-SKSYVLAI 276
            A   ++ +E S    +  T + LI  +    K ++ E I+  ++     R S +Y   I
Sbjct: 453 EALNMLKQMELSGCARSVITYNTLIDGFCKANKTREAEEIFDEMEVHGVSRNSVTYNTLI 512

Query: 277 EAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCK 336
           +   +  +V  A +L  +M    Q      YNS+++ +C+ G I KA+ +++ M+ NGC+
Sbjct: 513 DGLCKSRRVEDAAQLMDQMIMEGQKPDKYTYNSLLTHFCRGGDIKKAADIVQAMTSNGCE 572

Query: 337 PNAITYRHLALGCFKSNLVEEGFKAL-ELGMKLITTKKVRSSTPWLETTLSIIEIFAEKG 395
           P+ +TY  L  G  K+  VE   K L  + MK I        TP       +I+    K 
Sbjct: 573 PDIVTYGTLISGLCKAGRVEVASKLLRSIQMKGINL------TPHAYN--PVIQGLFRKR 624

Query: 396 DVGNAENLFEELKKAN 411
               A NLF E+ + N
Sbjct: 625 KTTEAINLFREMLEQN 640



 Score = 68.9 bits (167), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 80/403 (19%), Positives = 160/403 (39%), Gaps = 93/403 (23%)

Query: 133 FNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMK 192
           +NR++ L       K +     +M    + P VSTF++L+K     H +   + +  DM 
Sbjct: 157 YNRMLNLLVDGNSLKLVEISHAKMSVWGIKPDVSTFNVLIKALCRAHQLRPAILMLEDMP 216

Query: 193 RSEVEPNEVSYCILATAHAVARLYTVAETYVEA--------LEKSMT--GNNWSTLDVLI 242
              + P+E ++             TV + Y+E         + + M   G +WS + V +
Sbjct: 217 SYGLVPDEKTF------------TTVMQGYIEEGDLDGALRIREQMVEFGCSWSNVSVNV 264

Query: 243 ILYGYLAKGKDLERIWATVQELPNVRS--------------------------------- 269
           I++G+  +G+ +E     +QE+ N                                    
Sbjct: 265 IVHGFCKEGR-VEDALNFIQEMSNQDGFFPDQYTFNTLVNGLCKAGHVKHAIEIMDVMLQ 323

Query: 270 -------KSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDK 322
                   +Y   I    ++ +V  A E+  +M +      T  YN++IS  CK   +++
Sbjct: 324 EGYDPDVYTYNSVISGLCKLGEVKEAVEVLDQMITRDCSPNTVTYNTLISTLCKENQVEE 383

Query: 323 ASGLLKEMSMNGCKPNAITYRHL---------------------ALGC----FKSNLVEE 357
           A+ L + ++  G  P+  T+  L                     + GC    F  N++ +
Sbjct: 384 ATELARVLTSKGILPDVCTFNSLIQGLCLTRNHRVAMELFEEMRSKGCEPDEFTYNMLID 443

Query: 358 GFKA---LELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTK 414
              +   L+  + ++   ++      + T  ++I+ F +      AE +F+E++    ++
Sbjct: 444 SLCSKGKLDEALNMLKQMELSGCARSVITYNTLIDGFCKANKTREAEEIFDEMEVHGVSR 503

Query: 415 YTFVYNTLIKAYVKA-KIND-PNLLRRMILGGARPDAETYSLL 455
            +  YNTLI    K+ ++ D   L+ +MI+ G +PD  TY+ L
Sbjct: 504 NSVTYNTLIDGLCKSRRVEDAAQLMDQMIMEGQKPDKYTYNSL 546



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 97/467 (20%), Positives = 193/467 (41%), Gaps = 73/467 (15%)

Query: 16  SWMREGFPVHRGEIFHSINRLRKLQLNKRALEVME--------WVIR----------ERP 57
            WM + F +     F+  NR+  L ++  +L+++E        W I+          +  
Sbjct: 142 DWMIDEFGLKPDTHFY--NRMLNLLVDGNSLKLVEISHAKMSVWGIKPDVSTFNVLIKAL 199

Query: 58  YRPKELDYSYLLEFTIKNHGISQGEKLFCCIPKDYQNELLYNNLVIACLDKGVIKLSLEY 117
            R  +L  + L+   + ++G+   EK F  + + Y             +++G +  +L  
Sbjct: 200 CRAHQLRPAILMLEDMPSYGLVPDEKTFTTVMQGY-------------IEEGDLDGALRI 246

Query: 118 MKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMK-ADKVAPHVSTFHILMKIEA 176
            ++M   G S S +  N ++      GR +   N +++M   D   P   TF+ L+    
Sbjct: 247 REQMVEFGCSWSNVSVNVIVHGFCKEGRVEDALNFIQEMSNQDGFFPDQYTFNTLVNGLC 306

Query: 177 NDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGN--- 233
              +++  +++   M +   +P+  +Y   +    + +L  V E  VE L++ +T +   
Sbjct: 307 KAGHVKHAIEIMDVMLQEGYDPDVYTYN--SVISGLCKLGEVKEA-VEVLDQMITRDCSP 363

Query: 234 ---NWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEE 290
               ++TL   +     + +  +L R+  +   LP+V + + ++      R  +V  A E
Sbjct: 364 NTVTYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTRNHRV--AME 421

Query: 291 LWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCF 350
           L+ EM+S         YN +I   C  G +D+A  +LK+M ++GC  + ITY  L  G  
Sbjct: 422 LFEEMRSKGCEPDEFTYNMLIDSLCSKGKLDEALNMLKQMELSGCARSVITYNTLIDGFC 481

Query: 351 KSNLV---EEGFKALEL-GMK------------LITTKKVRSSTPWLETTL--------- 385
           K+N     EE F  +E+ G+             L  +++V  +   ++  +         
Sbjct: 482 KANKTREAEEIFDEMEVHGVSRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIMEGQKPDKY 541

Query: 386 ---SIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKA 429
              S++  F   GD+  A ++ + +           Y TLI    KA
Sbjct: 542 TYNSLLTHFCRGGDIKKAADIVQAMTSNGCEPDIVTYGTLISGLCKA 588



 Score = 39.7 bits (91), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 72/350 (20%), Positives = 131/350 (37%), Gaps = 75/350 (21%)

Query: 33  INRLRKLQLNKRALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQGEKL-------- 84
           I+ L KL   K A+EV++ +I  R   P  + Y+ L+    K + + +  +L        
Sbjct: 337 ISGLCKLGEVKEAVEVLDQMIT-RDCSPNTVTYNTLISTLCKENQVEEATELARVLTSKG 395

Query: 85  ----FC---------CIPKDYQ----------------NELLYNNLVIACLDKGVIKLSL 115
                C         C+ ++++                +E  YN L+ +   KG +  +L
Sbjct: 396 ILPDVCTFNSLIQGLCLTRNHRVAMELFEEMRSKGCEPDEFTYNMLIDSLCSKGKLDEAL 455

Query: 116 EYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIE 175
             +K+M + G + S + +N LI       + +    I  +M+   V+ +  T++ L+   
Sbjct: 456 NMLKQMELSGCARSVITYNTLIDGFCKANKTREAEEIFDEMEVHGVSRNSVTYNTLIDGL 515

Query: 176 ANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNW 235
                +E   ++   M     +P++ +Y  L T          A   V+A    MT N  
Sbjct: 516 CKSRRVEDAAQLMDQMIMEGQKPDKYTYNSLLTHFCRGGDIKKAADIVQA----MTSNGC 571

Query: 236 STLDVLIILYGYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEM 295
              +  I+ YG L  G                             +  +V  A +L   +
Sbjct: 572 ---EPDIVTYGTLISG---------------------------LCKAGRVEVASKLLRSI 601

Query: 296 QSVKQLKATEQ-YNSVISVYCKNGFIDKASGLLKEM-SMNGCKPNAITYR 343
           Q +K +  T   YN VI    +     +A  L +EM   N   P+A++YR
Sbjct: 602 Q-MKGINLTPHAYNPVIQGLFRKRKTTEAINLFREMLEQNEAPPDAVSYR 650


>gi|255549371|ref|XP_002515739.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223545176|gb|EEF46686.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 613

 Score = 80.1 bits (196), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 105/430 (24%), Positives = 184/430 (42%), Gaps = 52/430 (12%)

Query: 52  VIRERPYRPKELD--YSYLLEFTIKNHGISQGEKLFCCIPKDYQNELLYNNL------VI 103
           +I  R + PK ++     L    + N    +G K+F     DY   +++N L       I
Sbjct: 133 LIDNRFHEPKFVEKLCDMLFRVYVDNSMFEEGFKVF-----DY---MVHNGLKIDDRSCI 184

Query: 104 ACL------DKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNS--SPGRRKTIPNILRQ 155
            CL      D+ V  +SL + KKM  +   +   V++  I+++     GR +   +++ +
Sbjct: 185 VCLLALKRSDQMV--MSLGFFKKM--VEFKVDVTVYSMTIVIDGLCKKGRVERAKDLMLE 240

Query: 156 MKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARL 215
           M    + P+V T++ L+       + EG+ ++   M+  +V  N  +Y +L   +  +  
Sbjct: 241 MTGKGIKPNVVTYNTLVNAYIKIMDFEGVNEMLRLMEMDKVVYNAATYTLLIEWYGSSGK 300

Query: 216 YTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPN----VRSKS 271
              AE   +  EK +     + + V   +  +  K  +++R +A   EL        + +
Sbjct: 301 IAEAE---KVFEKMLERGVEADIHVFTSIISWQCKLGNMKRAFALFDELNERGLVANAHT 357

Query: 272 YVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMS 331
           Y   I       Q+  AE L  EMQS         +N++I+ YCK G ID+A  +   M 
Sbjct: 358 YGALIHGTCNSGQLDAAEMLVNEMQSQGLDMNLVIFNTLINGYCKKGMIDEALRMQDVME 417

Query: 332 MNGCKPNAITYRHLALGCFKSNLVEEG----FKALELGMKLITTKKVRSSTPWLETTLSI 387
             G + +  TY  +A G  K N  EE     F  +E G+            P   +   +
Sbjct: 418 KKGFENDIFTYNTIAGGLCKLNRHEEAKRWLFTMVEKGVD-----------PNAVSFTIM 466

Query: 388 IEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYV-KAKINDPNLLR-RMILGGA 445
           I+I  ++G++  AE +F+++KK         YNTLI  Y  K K+ +   L+  M   G 
Sbjct: 467 IDIHCKEGNLVEAERVFQDMKKKGEKPNVVTYNTLIDGYSKKGKLKEAYRLKDEMESIGM 526

Query: 446 RPDAETYSLL 455
             D  TY+ L
Sbjct: 527 TSDIYTYTTL 536



 Score = 43.5 bits (101), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 83/372 (22%), Positives = 146/372 (39%), Gaps = 24/372 (6%)

Query: 94  NELLYNNLV---IACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIP 150
           N + YN LV   I  +D   +   L  M+  +V+ ++ +Y +   LI    S G+     
Sbjct: 249 NVVTYNTLVNAYIKIMDFEGVNEMLRLMEMDKVVYNAATYTL---LIEWYGSSGKIAEAE 305

Query: 151 NILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAH 210
            +  +M    V   +  F  ++  +    N++    ++ ++    +  N  +Y  L    
Sbjct: 306 KVFEKMLERGVEADIHVFTSIISWQCKLGNMKRAFALFDELNERGLVANAHTYGALIHGT 365

Query: 211 AVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERI-WATVQELPNVRS 269
             +     AE  V  ++      N    + LI   GY  KG   E +    V E     +
Sbjct: 366 CNSGQLDAAEMLVNEMQSQGLDMNLVIFNTLI--NGYCKKGMIDEALRMQDVMEKKGFEN 423

Query: 270 KSYVLAIEAFGRIAQVSRAEEL--WLEMQSVKQLKATE-QYNSVISVYCKNGFIDKASGL 326
             +     A G + +++R EE   WL     K +      +  +I ++CK G + +A  +
Sbjct: 424 DIFTYNTIA-GGLCKLNRHEEAKRWLFTMVEKGVDPNAVSFTIMIDIHCKEGNLVEAERV 482

Query: 327 LKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLS 386
            ++M   G KPN +TY  L  G  K   ++E ++ L+  M+ I      +S  +  TTL 
Sbjct: 483 FQDMKKKGEKPNVVTYNTLIDGYSKKGKLKEAYR-LKDEMESIGM----TSDIYTYTTLV 537

Query: 387 IIE-IFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKINDP--NLLRRMILG 443
             E +F   G V  A  L  E+ +         Y  +I    K   ++    L   M+  
Sbjct: 538 HGECVF---GKVEEALTLLNEVCRKGLAISIVTYTAIISGLSKEGRSEEAFRLYDEMMAA 594

Query: 444 GARPDAETYSLL 455
           G  PD   Y+ L
Sbjct: 595 GLTPDDRVYTSL 606


>gi|356513567|ref|XP_003525484.1| PREDICTED: pentatricopeptide repeat-containing protein At1g74850,
           chloroplastic-like [Glycine max]
          Length = 857

 Score = 79.7 bits (195), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 75/329 (22%), Positives = 138/329 (41%), Gaps = 10/329 (3%)

Query: 116 EYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIE 175
           E +++M   G+      +N L+   +  G  K    + RQM+A     + +T+ +L+ + 
Sbjct: 296 ELLREMECGGNLPDITSYNVLLEAYAELGSIKEAMGVFRQMQAAGCVANAATYSVLLNLY 355

Query: 176 ANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNW 235
                 + +  ++ +MK S  +P+  +Y IL         +    T    + +     N 
Sbjct: 356 GKHGRYDDVRDLFLEMKVSNTDPDAGTYNILIQVFGEGGYFKEVVTLFHDMAEENVEPNM 415

Query: 236 STLDVLIILYGYLAKGKDLERIWATVQELPNV-RSKSYVLAIEAFGRIAQVSRAEELWLE 294
            T + LI   G     +D ++I   + E   V  SK+Y   IEAFG+ A    A  ++  
Sbjct: 416 QTYEGLIFACGKGGLYEDAKKILLHMNEKGVVPSSKAYTGVIEAFGQAALYEEALVMFNT 475

Query: 295 MQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNL 354
           M  V      E YNS+I  + + G   +A  +L  M+ +G K +  ++  +     +   
Sbjct: 476 MNEVGSNPTVETYNSLIHAFARGGLYKEAEAILSRMNESGLKRDVHSFNGVIEAFRQGGQ 535

Query: 355 VEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTK 414
            EE  K+       +  +K  +  P   T  +++ I+   G V   E  F+E+K +    
Sbjct: 536 YEEAVKS------YVEMEKA-NCEPNELTLEAVLSIYCSAGLVDEGEEQFQEIKASGILP 588

Query: 415 YTFVYNTLIKAYVK-AKINDP-NLLRRMI 441
               Y  ++  Y K  ++ND  NL+  MI
Sbjct: 589 SVMCYCMMLALYAKNDRLNDAYNLIDAMI 617



 Score = 78.2 bits (191), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 94/435 (21%), Positives = 178/435 (40%), Gaps = 69/435 (15%)

Query: 26  RGEIFHSINRLR-KLQLNKRALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQGEKL 84
           RG I   ++  + KL LN  AL   E+  R    R   L + Y+             ++ 
Sbjct: 82  RGSIARCLDPFKNKLSLNDFALVFKEFAQRGDWQRSLRL-FKYM-------------QRQ 127

Query: 85  FCCIPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPG 144
             C P    NE ++  ++     +G++    E   +M   G   +   +  +I      G
Sbjct: 128 IWCKP----NEHIHTIMITLLGREGLLDKCREVFDEMPSNGVVRTVYSYTAIINAYGRNG 183

Query: 145 RRKTIPNILRQMKADKVAPHVSTFHILMKIEANDH-NIEGLMKVYSDMKRSEVEPNEVSY 203
           +      +L  MK ++V+P + T++ ++   A    + EGL+ ++++M+   ++P+ ++Y
Sbjct: 184 QFHASLELLNGMKQERVSPSILTYNTVINACARGGLDWEGLLGLFAEMRHEGIQPDVITY 243

Query: 204 CILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQE 263
             L  A A                                   +   G + E ++ T+ E
Sbjct: 244 NTLLGACA-----------------------------------HRGLGDEAEMVFRTMNE 268

Query: 264 ---LPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFI 320
              +P++ + SY+  ++ FG++ ++ +  EL  EM+    L     YN ++  Y + G I
Sbjct: 269 SGIVPDINTYSYL--VQTFGKLNRLEKVSELLREMECGGNLPDITSYNVLLEAYAELGSI 326

Query: 321 DKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPW 380
            +A G+ ++M   GC  NA TY  L L  +  +   +  + L L M      KV ++ P 
Sbjct: 327 KEAMGVFRQMQAAGCVANAATYSVL-LNLYGKHGRYDDVRDLFLEM------KVSNTDPD 379

Query: 381 LETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKI--NDPNLLR 438
             T   +I++F E G       LF ++ + N       Y  LI A  K  +  +   +L 
Sbjct: 380 AGTYNILIQVFGEGGYFKEVVTLFHDMAEENVEPNMQTYEGLIFACGKGGLYEDAKKILL 439

Query: 439 RMILGGARPDAETYS 453
            M   G  P ++ Y+
Sbjct: 440 HMNEKGVVPSSKAYT 454



 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 44/188 (23%), Positives = 82/188 (43%), Gaps = 12/188 (6%)

Query: 272 YVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMS 331
           + + I   GR   + +  E++ EM S   ++    Y ++I+ Y +NG    +  LL  M 
Sbjct: 137 HTIMITLLGREGLLDKCREVFDEMPSNGVVRTVYSYTAIINAYGRNGQFHASLELLNGMK 196

Query: 332 MNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIF 391
                P+ +TY  +   C +  L  EG       + L    +     P + T  +++   
Sbjct: 197 QERVSPSILTYNTVINACARGGLDWEGL------LGLFAEMRHEGIQPDVITYNTLLGAC 250

Query: 392 AEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVK----AKINDPNLLRRMILGGARP 447
           A +G    AE +F  + ++        Y+ L++ + K     K+++  LLR M  GG  P
Sbjct: 251 AHRGLGDEAEMVFRTMNESGIVPDINTYSYLVQTFGKLNRLEKVSE--LLREMECGGNLP 308

Query: 448 DAETYSLL 455
           D  +Y++L
Sbjct: 309 DITSYNVL 316


>gi|297803972|ref|XP_002869870.1| hypothetical protein ARALYDRAFT_354609 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297315706|gb|EFH46129.1| hypothetical protein ARALYDRAFT_354609 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 480

 Score = 79.7 bits (195), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 93/419 (22%), Positives = 180/419 (42%), Gaps = 24/419 (5%)

Query: 5   PRGEP---VGSAFQSWMREGFPVHRGEIFHSINRLRKLQLNKRALEVMEWVIRERPYRPK 61
           P G+P   +      W  EG    + E+   I  L K +    ALEV  W + +R + P 
Sbjct: 44  PLGDPKISIVPVLDEWRGEGNYTSKEELRGMIKELIKYKRFVHALEVSRW-MSDRMFFPL 102

Query: 62  EL-DYSYLLEFTIKNHGISQGEKLFCCIPKDYQNELLYNNLVIACLDKGVIKLSLEYMKK 120
            L D+   +    +  G+ + E  F  IPKD +   ++++L+     +   + + + ++ 
Sbjct: 103 SLTDFGTRINLISRVCGLGEAEVFFENIPKDMKGIAVFSSLLSCYAREKSAEKAAKLVEA 162

Query: 121 MRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHN 180
           M+  G S+    +N ++ +         + +++ +M+ + V+    T  I +   A   N
Sbjct: 163 MKEAGVSMDTRCYNLMMNMYYQMNVHGKLDDLMLEMEQNGVSFDQFTLSIRLSAYAAASN 222

Query: 181 IEGLMKVYSDMKRSEVEPNEVSYCIL-ATAHAVARLYTVAETYV-----EALEKSMTGNN 234
           IEG+ K     K S +    + + I  A A+A  ++  + E  +     E      +GN 
Sbjct: 223 IEGIEKTIE--KISSMSETAIDWTIYSAAANAFLKVELIDEATMMLKKCEEFVNEDSGN- 279

Query: 235 WSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLE 294
                 L+ LYG   + +DL R+W   +E   V +  Y + I +  +   +   E+++ +
Sbjct: 280 -EAFHTLLKLYGETGRKEDLSRVWLRFKEERKVFNSGYKIMISSALKFGDIELVEKVFNQ 338

Query: 295 MQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNL 354
            +S K        N +I+ YC+    +KA  LLK+   N   P    Y  LA    + + 
Sbjct: 339 WESEKLSYDFRIPNLLINFYCEKDLTEKAELLLKKAEGNRVSPPMDAYICLANIYLEGDE 398

Query: 355 VEEGFKALE--LGMKLITTKKVRSSTPWLETTLSII-------EIFAEKGDVGNAENLF 404
           + +  +A+E  +  ++ T +++ +    L + L+ +       E F E  D   +ENLF
Sbjct: 399 ISKATEAIERAVSTQIETEQRLEAQRELLNSCLACLRGNGDGRERFGEVMDSLTSENLF 457


>gi|357458533|ref|XP_003599547.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355488595|gb|AES69798.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 636

 Score = 79.7 bits (195), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 86/364 (23%), Positives = 144/364 (39%), Gaps = 43/364 (11%)

Query: 94  NELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNIL 153
           N ++YN ++ +     ++  + E   +M     S   + F+ LI      G+ +    + 
Sbjct: 207 NVVMYNTIIDSLCKHKLVIDAYELYSQMIAKKISPDVVTFSALIYGFCIVGQLEEAFGLF 266

Query: 154 RQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVA 213
           R+M    + P   TF+IL+     + N++G   +   M +  V PN V+Y  L   +   
Sbjct: 267 REMVLKNINPDYYTFNILVDALCKEGNLKGAKNMLVVMMKEGVMPNVVTYSSLMDGYC-- 324

Query: 214 RLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSKSYV 273
                                         L   + K K +    + +   PN  + SY 
Sbjct: 325 ------------------------------LVNQVNKAKHVLNTISQMGAAPN--AHSYC 352

Query: 274 LAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMN 333
             I  F +I  V  A  L+ +MQ          YNS+I   CK+G I  A  L+ EM  N
Sbjct: 353 TMINGFCKIKMVDEALSLFNDMQFKGIAPDKVTYNSLIDGLCKSGRISYAWELVDEMHDN 412

Query: 334 GCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAE 393
           G   N  TY  L     K++ V++        + L+   K +   P + T   +I    +
Sbjct: 413 GQPANIFTYNCLIDALCKNHHVDQ-------AIALVKKIKDQGIQPDMYTFNILIYGLCK 465

Query: 394 KGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKIND--PNLLRRMILGGARPDAET 451
            G + NA+++F++L    Y+   + YN ++    K  + D    LL +M   G  PDA T
Sbjct: 466 VGRLKNAQDVFQDLLSKGYSVNAWTYNIMVNGLCKEGLFDEAEALLSKMDDNGIIPDAVT 525

Query: 452 YSLL 455
           Y  L
Sbjct: 526 YETL 529



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 61/272 (22%), Positives = 124/272 (45%), Gaps = 13/272 (4%)

Query: 98  YNNLVIACLDKGVIKLS---LEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILR 154
           +N LV A   +G +K +   L  M K  V+ + ++Y        L +   + K + N + 
Sbjct: 281 FNILVDALCKEGNLKGAKNMLVVMMKEGVMPNVVTYSSLMDGYCLVNQVNKAKHVLNTIS 340

Query: 155 QMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVAR 214
           QM A   AP+  ++  ++        ++  + +++DM+   + P++V+Y  L      + 
Sbjct: 341 QMGA---APNAHSYCTMINGFCKIKMVDEALSLFNDMQFKGIAPDKVTYNSLIDGLCKSG 397

Query: 215 LYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPN--VRSKSY 272
             + A   V+ +  +    N  T + LI     L K   +++  A V+++ +  ++   Y
Sbjct: 398 RISYAWELVDEMHDNGQPANIFTYNCLI---DALCKNHHVDQAIALVKKIKDQGIQPDMY 454

Query: 273 VLAIEAFG--RIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEM 330
              I  +G  ++ ++  A++++ ++ S         YN +++  CK G  D+A  LL +M
Sbjct: 455 TFNILIYGLCKVGRLKNAQDVFQDLLSKGYSVNAWTYNIMVNGLCKEGLFDEAEALLSKM 514

Query: 331 SMNGCKPNAITYRHLALGCFKSNLVEEGFKAL 362
             NG  P+A+TY  L    F  +  E+  K L
Sbjct: 515 DDNGIIPDAVTYETLIQALFHKDENEKAEKLL 546



 Score = 47.0 bits (110), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 66/337 (19%), Positives = 140/337 (41%), Gaps = 22/337 (6%)

Query: 129 SYLVFNRLI--ILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMK 186
           S + FN+++  ++ S+     T  ++ R+++   + P + TF+IL+    +   +     
Sbjct: 65  SIIEFNKILGSLVKSNNNHYPTAISLSRRLEFHGITPDIFTFNILINCYCHMAEMNFAFS 124

Query: 187 VYSDMKRSEVEPNEVSYCILATAHAVARLYTVA---ETYVEALEKSMTGNNWSTLDVLII 243
           + + + +   EP+ +++  L     +      A     +V AL   +   ++ TL     
Sbjct: 125 MMAKILKMGYEPDTITFNTLIKGLCLNGKVKEALHFHDHVLALGFHLDQFSYGTL----- 179

Query: 244 LYGYLAKGKD---LERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQ 300
           + G    G+    L+ +     +L  +    Y   I++  +   V  A EL+ +M + K 
Sbjct: 180 INGLCKIGETRTALQMLRKIDGKLVKINVVMYNTIIDSLCKHKLVIDAYELYSQMIAKKI 239

Query: 301 LKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFK 360
                 ++++I  +C  G +++A GL +EM +    P+  T+  L        L +EG  
Sbjct: 240 SPDVVTFSALIYGFCIVGQLEEAFGLFREMVLKNINPDYYTFNILV-----DALCKEG-- 292

Query: 361 ALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYN 420
            L+    ++         P + T  S+++ +     V  A+++   + +         Y 
Sbjct: 293 NLKGAKNMLVVMMKEGVMPNVVTYSSLMDGYCLVNQVNKAKHVLNTISQMGAAPNAHSYC 352

Query: 421 TLIKAYVKAKINDP--NLLRRMILGGARPDAETYSLL 455
           T+I  + K K+ D   +L   M   G  PD  TY+ L
Sbjct: 353 TMINGFCKIKMVDEALSLFNDMQFKGIAPDKVTYNSL 389


>gi|168036199|ref|XP_001770595.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162678116|gb|EDQ64578.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 743

 Score = 79.7 bits (195), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 91/428 (21%), Positives = 180/428 (42%), Gaps = 27/428 (6%)

Query: 44  RALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQGEKLFC-CIPKDYQNELLYNNLV 102
           RA ++M     E+  +P  L YS ++    KN  +   E  F   +    Q    Y+ ++
Sbjct: 67  RAFQMM----LEKGVQPTRLTYSMMMLLYQKNGKVEDAEVAFSHMLQSGIQVVAAYSAMI 122

Query: 103 IACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNS--SPGRRKTIPNILRQMKADK 160
                 G  + + + M+ M    H I+    N L  +N+    G+ +   +I+  M+   
Sbjct: 123 AIYTRCGFFEKAEKIMEDM--WNHKIAPDRDNWLKQMNTYGQQGKIEEAEHIMDTMERLG 180

Query: 161 VAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAE 220
           +   V  ++ ++         E  ++++  MK + +EP+EV+Y  +  A   A     A 
Sbjct: 181 MHLGVVGYNSMITAYGKAGLYEKALRLFEKMKEAGLEPDEVTYSCMIGACGRAGKLRDAL 240

Query: 221 TYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNV----RSKSYVLAI 276
            Y +A+++       S  + LI LYG   K +++  I   + ++ N      S++    +
Sbjct: 241 DYFQAMKRLGIMPASSNFNTLISLYG---KARNVVGIVRVLADMKNFGCTPDSQTLDAVV 297

Query: 277 EAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCK 336
            A+ R  Q  +  ++   ++    ++ TE Y +++ VY K     +A  +   M   G  
Sbjct: 298 RAYERAGQTKKVVQVLSLLREAGWVEDTESYGTLLHVYLKCNLQKEALSVFSAMRKAGMA 357

Query: 337 PNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGD 396
           P     R L   C  + + E+          +    +     P LET+ ++I +   KGD
Sbjct: 358 PKEYMCRSLICACKDAGMFEDA-------TNVFRDMQSAGVVPSLETSCTMINVHGLKGD 410

Query: 397 VGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKINDPNLLRRMIL---GGARPDAETY- 452
           V  AE LF  L+ +        YN +I  Y++  +++       ++    G  PD+ TY 
Sbjct: 411 VKQAEELFRSLRSSVSKLDIIAYNVIINVYMRYGMHEEAFRIYKLMEEEDGLLPDSYTYH 470

Query: 453 SLLKLAEQ 460
           S+L++ ++
Sbjct: 471 SMLRMCQK 478



 Score = 60.8 bits (146), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 68/316 (21%), Positives = 135/316 (42%), Gaps = 16/316 (5%)

Query: 146 RKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCI 205
           +K   ++   M+   +AP       L+    +    E    V+ DM+ + V P+  + C 
Sbjct: 341 QKEALSVFSAMRKAGMAPKEYMCRSLICACKDAGMFEDATNVFRDMQSAGVVPSLETSCT 400

Query: 206 LATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELP 265
           +   H +      AE    +L  S++  +    +V+I +Y      ++  RI+  ++E  
Sbjct: 401 MINVHGLKGDVKQAEELFRSLRSSVSKLDIIAYNVIINVYMRYGMHEEAFRIYKLMEEED 460

Query: 266 NVRSKSYVLAIEAFGRIAQ----VSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFID 321
            +   SY     +  R+ Q     ++AEE++  +++          N V++   +   ++
Sbjct: 461 GLLPDSYTY--HSMLRMCQKCNLQTQAEEIYWRLRNSDVELDEVMCNCVLNTCARFLPLE 518

Query: 322 KASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWL 381
           +   + +EM   GC PN IT+  +     KS +++    A +L  +L    K+  ST   
Sbjct: 519 EVHKIFQEMIDVGCIPNTITFNVMIDLYGKSGMLDRARDASKLAQQLGVADKITFST--- 575

Query: 382 ETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKIND--PNLLRR 439
                +I  + +K D  N E    E++ A +      YN ++ AY KA   D   +++ R
Sbjct: 576 -----LINSYGKKQDFRNMEATLWEMQNAGHGGSLEAYNCVLDAYGKAGHLDKLEDVIAR 630

Query: 440 MILGGARPDAETYSLL 455
           M   G + D  +Y++L
Sbjct: 631 MEKSGLQMDLASYNIL 646



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 61/319 (19%), Positives = 128/319 (40%), Gaps = 34/319 (10%)

Query: 149 IPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILAT 208
           I  +L QM  D   P   TF+ L+   +     +   + +  M    V+P  ++Y ++  
Sbjct: 30  IDELLGQMLGDGCVPDDYTFNTLIMSASKADYADYATRAFQMMLEKGVQPTRLTYSMMML 89

Query: 209 AHAVARLYTVAETYVEALEKS--MTGNNWSTLDVLIILYGYLAKG-KDLERIWATVQELP 265
            +        AE     + +S       +S +  +    G+  K  K +E +W   +  P
Sbjct: 90  LYQKNGKVEDAEVAFSHMLQSGIQVVAAYSAMIAIYTRCGFFEKAEKIMEDMW-NHKIAP 148

Query: 266 NVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASG 325
           +    +++  +  +G+  ++  AE +   M+ +        YNS+I+ Y K G  +KA  
Sbjct: 149 D--RDNWLKQMNTYGQQGKIEEAEHIMDTMERLGMHLGVVGYNSMITAYGKAGLYEKALR 206

Query: 326 LLKEMSMNGCKPNAITYRHLALGCFKSNLVEEG---FKALE-LGM--------------- 366
           L ++M   G +P+ +TY  +   C ++  + +    F+A++ LG+               
Sbjct: 207 LFEKMKEAGLEPDEVTYSCMIGACGRAGKLRDALDYFQAMKRLGIMPASSNFNTLISLYG 266

Query: 367 ---------KLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTF 417
                    +++   K    TP  +T  +++  +   G       +   L++A + + T 
Sbjct: 267 KARNVVGIVRVLADMKNFGCTPDSQTLDAVVRAYERAGQTKKVVQVLSLLREAGWVEDTE 326

Query: 418 VYNTLIKAYVKAKINDPNL 436
            Y TL+  Y+K  +    L
Sbjct: 327 SYGTLLHVYLKCNLQKEAL 345



 Score = 43.5 bits (101), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 42/213 (19%), Positives = 94/213 (44%), Gaps = 9/213 (4%)

Query: 149 IPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVE---PNEVSYCI 205
           +  I ++M      P+  TF++++ +    +   G++    D  +   +    +++++  
Sbjct: 520 VHKIFQEMIDVGCIPNTITFNVMIDL----YGKSGMLDRARDASKLAQQLGVADKITFST 575

Query: 206 LATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELP 265
           L  ++   + +   E  +  ++ +  G +    + ++  YG       LE + A +++  
Sbjct: 576 LINSYGKKQDFRNMEATLWEMQNAGHGGSLEAYNCVLDAYGKAGHLDKLEDVIARMEKSG 635

Query: 266 -NVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKAS 324
             +   SY + I  +GR  +++  E L+ +MQ    +     YN++I  Y    + DKA 
Sbjct: 636 LQMDLASYNILINIYGRHTKIAEMEALFHKMQEEGFIPDRWTYNTMIRTYGYADYPDKAV 695

Query: 325 GLLKEMSMNGCKPNAITYRHLALGCFKS-NLVE 356
              K M  +G  P+ +TY  L     K+ NL+E
Sbjct: 696 DTFKMMQDSGIMPDRVTYVMLVAAFEKAGNLLE 728


>gi|255541126|ref|XP_002511627.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223548807|gb|EEF50296.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 1163

 Score = 79.7 bits (195), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 89/440 (20%), Positives = 184/440 (41%), Gaps = 30/440 (6%)

Query: 36  LRKLQLNKRALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQGEKLFCCIPKDYQNE 95
           LR ++   +AL+   W   E  +   +  Y  +LE   +   ++        I +     
Sbjct: 93  LRLIKTPSKALQFFNWA-PELGFTHNDQSYFLMLEILGRARNLNVARNFLFSIKRRSNGT 151

Query: 96  L-----LYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIP 150
           +      +N+L+ +    G+ + S++    M+ +G S S + FN L+++    GR     
Sbjct: 152 VKLEDRFFNSLIRSYGKAGLFQESVQVFNSMKSVGVSPSVVTFNSLLLILLKRGRTNMAQ 211

Query: 151 NILRQMKAD-KVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATA 209
           ++  +M +   V P   TF+IL++    +  ++   + + +M R + +P+ V+Y  L   
Sbjct: 212 SVFDEMLSTYGVTPDTYTFNILIRGFCKNSMVDEGFRFFKEMSRFKCDPDLVTYNTLVDG 271

Query: 210 HAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQEL----- 264
              A    +A   V  + K  T  N   +    ++ GY  K  +++      +E+     
Sbjct: 272 LCRAGKVNIAHNVVNGMVKKSTNLNPDVVTYTTLVRGYCMK-HEIDEALVVFEEMVSKGL 330

Query: 265 -PNVRSKSYVLAIEAFGRIAQVSRAEELWL-EMQSVKQLKATEQYNSVISVYCKNGFIDK 322
            PN    +Y   I+    + ++ + ++++   +     +  T   N++++ +C  G ++ 
Sbjct: 331 KPN--EITYNTLIKGLCEVQKIDKIKQIFEGALGGGGFIPDTCTLNTLMNAHCNAGNLND 388

Query: 323 ASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEG-FKALELGMKLITTKKV----RSS 377
           A  + ++M +   +P++ TY  L       NL + G F+  E     ++ K++       
Sbjct: 389 ALEVFEKMMVLNVRPDSATYSVLI-----RNLCQRGNFERAEQLFDELSEKEILLRDDGC 443

Query: 378 TPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKINDPN-- 435
           TP +    S+ E     G    AE +F +L K   T+    +  LIK + +    +    
Sbjct: 444 TPLVAAYKSMFEFLCRNGKTAKAERVFRQLMKRG-TQDPLSFKILIKGHCREGTFEAGYE 502

Query: 436 LLRRMILGGARPDAETYSLL 455
           LL  M+     PD ETY  L
Sbjct: 503 LLVLMLRRDFVPDLETYQSL 522



 Score = 65.5 bits (158), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 70/338 (20%), Positives = 146/338 (43%), Gaps = 21/338 (6%)

Query: 98  YNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQM- 156
           +N L+       ++     + K+M         + +N L+      G+     N++  M 
Sbjct: 230 FNILIRGFCKNSMVDEGFRFFKEMSRFKCDPDLVTYNTLVDGLCRAGKVNIAHNVVNGMV 289

Query: 157 -KADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHA-VAR 214
            K+  + P V T+  L++     H I+  + V+ +M    ++PNE++Y  L      V +
Sbjct: 290 KKSTNLNPDVVTYTTLVRGYCMKHEIDEALVVFEEMVSKGLKPNEITYNTLIKGLCEVQK 349

Query: 215 LYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVR--SKSY 272
           +  + + +  AL       +  TL+ L+  +       D   ++  +  L NVR  S +Y
Sbjct: 350 IDKIKQIFEGALGGGGFIPDTCTLNTLMNAHCNAGNLNDALEVFEKMMVL-NVRPDSATY 408

Query: 273 VLAIEAFGRIAQVSRAEELWLEMQSVKQLKATE-------QYNSVISVYCKNGFIDKASG 325
            + I    +     RAE+L+ E+   + L   +        Y S+    C+NG   KA  
Sbjct: 409 SVLIRNLCQRGNFERAEQLFDELSEKEILLRDDGCTPLVAAYKSMFEFLCRNGKTAKAER 468

Query: 326 LLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTL 385
           + +++   G + + ++++ L  G  +    E G++ L L ++       R   P LET  
Sbjct: 469 VFRQLMKRGTQ-DPLSFKILIKGHCREGTFEAGYELLVLMLR-------RDFVPDLETYQ 520

Query: 386 SIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLI 423
           S+I+   +KG+   A    E++ K+++   T  +++++
Sbjct: 521 SLIDGLLQKGEPLVAYQTLEKMIKSSHVPETSTFHSIL 558


>gi|225189439|emb|CAR70003.1| pentatricopeptide repeat(PPR)-containing protein At1g12700
           [Arabidopsis thaliana]
          Length = 602

 Score = 79.7 bits (195), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 65/332 (19%), Positives = 147/332 (44%), Gaps = 8/332 (2%)

Query: 98  YNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMK 157
           Y+ ++ +    G I  ++   K+M   G   S + +N L+      G+      +L+ M 
Sbjct: 231 YSTIIDSLCRDGCIDAAISLFKEMETKGIKSSVVTYNSLVRGLCKAGKWNDGALLLKDMV 290

Query: 158 ADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYT 217
           + ++ P+V TF++L+ +   +  ++   ++Y +M    + PN ++Y  L   + +    +
Sbjct: 291 SREIVPNVITFNVLLDVFVKEGKLQEANELYKEMITRGISPNIITYNTLMDGYCMQNRLS 350

Query: 218 VAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNV-RSKSYVLAI 276
            A   ++ + ++    +  T   LI  Y  + +  D  +++  + +   V  + +Y + +
Sbjct: 351 EANNMLDLMVRNKCSPDIVTFTSLIKGYCMVKRVDDGMKVFRNISKRGLVANAVTYSILV 410

Query: 277 EAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCK 336
           + F +  ++  AEEL+ EM S   L     Y  ++   C NG ++KA  + +++  +   
Sbjct: 411 QGFCQSGKIKLAEELFQEMVSHGVLPDVMTYGILLDGLCDNGKLEKALEIFEDLQKSKMD 470

Query: 337 PNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGD 396
              + Y  +  G  K   VE+ +        L  +   +   P + T   +I    +KG 
Sbjct: 471 LGIVMYTTIIEGMCKGGKVEDAW-------NLFCSLPCKGVKPNVMTYTVMISGLCKKGS 523

Query: 397 VGNAENLFEELKKANYTKYTFVYNTLIKAYVK 428
           +  A  L  ++++         YNTLI+A+++
Sbjct: 524 LSEANILLRKMEEDGNAPNDCTYNTLIRAHLR 555



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 65/309 (21%), Positives = 129/309 (41%), Gaps = 45/309 (14%)

Query: 185 MKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIIL 244
           + ++ +M RS   P  V +    +A A  + + +   + + LE +   +N  TL+++I  
Sbjct: 73  IALFQEMIRSRPLPGLVDFSRFFSAIARTKQFNLVLDFCKQLELNGIAHNIYTLNIMINC 132

Query: 245 YGYLAKGKDLERIWATVQEL---PNVR---------------SKSYVLA----------- 275
           +    K      +   V +L   P+                 SK+ VL            
Sbjct: 133 FCRCCKTCFAYSVLGKVMKLGYEPDTTTFNTLINGLCLEGKVSKAVVLVDRMVENGCQPD 192

Query: 276 -------IEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLK 328
                  +    R    S A ++  +M+          Y+++I   C++G ID A  L K
Sbjct: 193 MVTYNSIVNGICRSGDTSLAFDMLRKMEERNVKADVFTYSTIIDSLCRDGCIDAAISLFK 252

Query: 329 EMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSII 388
           EM   G K + +TY  L  G  K+    +G     L +K + ++++    P + T   ++
Sbjct: 253 EMETKGIKSSVVTYNSLVRGLCKAGKWNDG----ALLLKDMVSREI---VPNVITFNVLL 305

Query: 389 EIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAY-VKAKINDP-NLLRRMILGGAR 446
           ++F ++G +  A  L++E+     +     YNTL+  Y ++ ++++  N+L  M+     
Sbjct: 306 DVFVKEGKLQEANELYKEMITRGISPNIITYNTLMDGYCMQNRLSEANNMLDLMVRNKCS 365

Query: 447 PDAETYSLL 455
           PD  T++ L
Sbjct: 366 PDIVTFTSL 374



 Score = 59.7 bits (143), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 68/321 (21%), Positives = 130/321 (40%), Gaps = 43/321 (13%)

Query: 94  NELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNIL 153
           N + +N L+   + +G ++ + E  K+M   G S + + +N L+       R     N+L
Sbjct: 297 NVITFNVLLDVFVKEGKLQEANELYKEMITRGISPNIITYNTLMDGYCMQNRLSEANNML 356

Query: 154 RQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVA 213
             M  +K +P + TF  L+K       ++  MKV+ ++ +  +  N V+Y IL      +
Sbjct: 357 DLMVRNKCSPDIVTFTSLIKGYCMVKRVDDGMKVFRNISKRGLVANAVTYSILVQGFCQS 416

Query: 214 RLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSKSYV 273
               +AE   + +                + +G                 LP+V   +Y 
Sbjct: 417 GKIKLAEELFQEM----------------VSHGV----------------LPDVM--TYG 442

Query: 274 LAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMN 333
           + ++      ++ +A E++ ++Q  K       Y ++I   CK G ++ A  L   +   
Sbjct: 443 ILLDGLCDNGKLEKALEIFEDLQKSKMDLGIVMYTTIIEGMCKGGKVEDAWNLFCSLPCK 502

Query: 334 GCKPNAITYRHLALG-CFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFA 392
           G KPN +TY  +  G C K +L E           L+   +   + P   T  ++I    
Sbjct: 503 GVKPNVMTYTVMISGLCKKGSLSEANI--------LLRKMEEDGNAPNDCTYNTLIRAHL 554

Query: 393 EKGDVGNAENLFEELKKANYT 413
             GD+  +  L EE+K   ++
Sbjct: 555 RDGDLTASAKLIEEMKSCGFS 575



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 40/151 (26%), Positives = 68/151 (45%), Gaps = 9/151 (5%)

Query: 307 YNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGM 366
           +N ++ V+ K G + +A+ L KEM   G  PN ITY  L  G    N + E    L+L +
Sbjct: 301 FNVLLDVFVKEGKLQEANELYKEMITRGISPNIITYNTLMDGYCMQNRLSEANNMLDLMV 360

Query: 367 KLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAY 426
           +          +P + T  S+I+ +     V +   +F  + K         Y+ L++ +
Sbjct: 361 R-------NKCSPDIVTFTSLIKGYCMVKRVDDGMKVFRNISKRGLVANAVTYSILVQGF 413

Query: 427 VKA-KIN-DPNLLRRMILGGARPDAETYSLL 455
            ++ KI     L + M+  G  PD  TY +L
Sbjct: 414 CQSGKIKLAEELFQEMVSHGVLPDVMTYGIL 444


>gi|193806393|sp|P0C7Q7.1|PPR38_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial; Flags: Precursor
          Length = 602

 Score = 79.7 bits (195), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 65/332 (19%), Positives = 147/332 (44%), Gaps = 8/332 (2%)

Query: 98  YNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMK 157
           Y+ ++ +    G I  ++   K+M   G   S + +N L+      G+      +L+ M 
Sbjct: 231 YSTIIDSLCRDGCIDAAISLFKEMETKGIKSSVVTYNSLVRGLCKAGKWNDGALLLKDMV 290

Query: 158 ADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYT 217
           + ++ P+V TF++L+ +   +  ++   ++Y +M    + PN ++Y  L   + +    +
Sbjct: 291 SREIVPNVITFNVLLDVFVKEGKLQEANELYKEMITRGISPNIITYNTLMDGYCMQNRLS 350

Query: 218 VAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNV-RSKSYVLAI 276
            A   ++ + ++    +  T   LI  Y  + +  D  +++  + +   V  + +Y + +
Sbjct: 351 EANNMLDLMVRNKCSPDIVTFTSLIKGYCMVKRVDDGMKVFRNISKRGLVANAVTYSILV 410

Query: 277 EAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCK 336
           + F +  ++  AEEL+ EM S   L     Y  ++   C NG ++KA  + +++  +   
Sbjct: 411 QGFCQSGKIKLAEELFQEMVSHGVLPDVMTYGILLDGLCDNGKLEKALEIFEDLQKSKMD 470

Query: 337 PNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGD 396
              + Y  +  G  K   VE+ +        L  +   +   P + T   +I    +KG 
Sbjct: 471 LGIVMYTTIIEGMCKGGKVEDAW-------NLFCSLPCKGVKPNVMTYTVMISGLCKKGS 523

Query: 397 VGNAENLFEELKKANYTKYTFVYNTLIKAYVK 428
           +  A  L  ++++         YNTLI+A+++
Sbjct: 524 LSEANILLRKMEEDGNAPNDCTYNTLIRAHLR 555



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 46/187 (24%), Positives = 89/187 (47%), Gaps = 9/187 (4%)

Query: 271 SYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEM 330
           +Y   +    R    S A +L  +M+          Y+++I   C++G ID A  L KEM
Sbjct: 195 TYNSIVNGICRSGDTSLALDLLRKMEERNVKADVFTYSTIIDSLCRDGCIDAAISLFKEM 254

Query: 331 SMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEI 390
              G K + +TY  L  G  K+    +G     L +K + ++++    P + T   ++++
Sbjct: 255 ETKGIKSSVVTYNSLVRGLCKAGKWNDG----ALLLKDMVSREI---VPNVITFNVLLDV 307

Query: 391 FAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAY-VKAKINDP-NLLRRMILGGARPD 448
           F ++G +  A  L++E+     +     YNTL+  Y ++ ++++  N+L  M+     PD
Sbjct: 308 FVKEGKLQEANELYKEMITRGISPNIITYNTLMDGYCMQNRLSEANNMLDLMVRNKCSPD 367

Query: 449 AETYSLL 455
             T++ L
Sbjct: 368 IVTFTSL 374



 Score = 60.1 bits (144), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 68/321 (21%), Positives = 130/321 (40%), Gaps = 43/321 (13%)

Query: 94  NELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNIL 153
           N + +N L+   + +G ++ + E  K+M   G S + + +N L+       R     N+L
Sbjct: 297 NVITFNVLLDVFVKEGKLQEANELYKEMITRGISPNIITYNTLMDGYCMQNRLSEANNML 356

Query: 154 RQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVA 213
             M  +K +P + TF  L+K       ++  MKV+ ++ +  +  N V+Y IL      +
Sbjct: 357 DLMVRNKCSPDIVTFTSLIKGYCMVKRVDDGMKVFRNISKRGLVANAVTYSILVQGFCQS 416

Query: 214 RLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSKSYV 273
               +AE   + +                + +G                 LP+V   +Y 
Sbjct: 417 GKIKLAEELFQEM----------------VSHGV----------------LPDVM--TYG 442

Query: 274 LAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMN 333
           + ++      ++ +A E++ ++Q  K       Y ++I   CK G ++ A  L   +   
Sbjct: 443 ILLDGLCDNGKLEKALEIFEDLQKSKMDLGIVMYTTIIEGMCKGGKVEDAWNLFCSLPCK 502

Query: 334 GCKPNAITYRHLALG-CFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFA 392
           G KPN +TY  +  G C K +L E           L+   +   + P   T  ++I    
Sbjct: 503 GVKPNVMTYTVMISGLCKKGSLSEANI--------LLRKMEEDGNAPNDCTYNTLIRAHL 554

Query: 393 EKGDVGNAENLFEELKKANYT 413
             GD+  +  L EE+K   ++
Sbjct: 555 RDGDLTASAKLIEEMKSCGFS 575



 Score = 53.1 bits (126), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 56/273 (20%), Positives = 111/273 (40%), Gaps = 43/273 (15%)

Query: 185 MKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIIL 244
           + ++ +M RS   P+ V +    +A A  + + +   + + LE +   +N  TL+++I  
Sbjct: 73  IALFQEMIRSRPLPSLVDFSRFFSAIARTKQFNLVLDFCKQLELNGIAHNIYTLNIMINC 132

Query: 245 YGYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKAT 304
           +                      R      A    G++ ++    +             T
Sbjct: 133 F---------------------CRCCKTCFAYSVLGKVMKLGYEPD-------------T 158

Query: 305 EQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALEL 364
             +N++I      G + +A  L+  M  NGC+P+ +TY  +  G  +S           L
Sbjct: 159 TTFNTLIKGLFLEGKVSEAVVLVDRMVENGCQPDVVTYNSIVNGICRSG-------DTSL 211

Query: 365 GMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIK 424
            + L+   + R+    + T  +II+     G +  A +LF+E++          YN+L++
Sbjct: 212 ALDLLRKMEERNVKADVFTYSTIIDSLCRDGCIDAAISLFKEMETKGIKSSVVTYNSLVR 271

Query: 425 AYVKA-KINDPN-LLRRMILGGARPDAETYSLL 455
              KA K ND   LL+ M+     P+  T+++L
Sbjct: 272 GLCKAGKWNDGALLLKDMVSREIVPNVITFNVL 304



 Score = 52.8 bits (125), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 90/457 (19%), Positives = 182/457 (39%), Gaps = 58/457 (12%)

Query: 10  VGSAFQSWMREGFPVHRGEIFHSINRLRKLQLNKR---ALEVMEWVIRERPYRPKELDYS 66
           + S F S  R+   +  G +     RLR   ++ +   A+ + + +IR RP  P  +D+S
Sbjct: 35  ISSFFSSCERDFSSISNGNVCFR-ERLRSGIVDIKKDDAIALFQEMIRSRPL-PSLVDFS 92

Query: 67  YLLEFTIKNHGISQGEKLFCCIPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGH 126
                           + F  I +  Q                   L L++ K++ + G 
Sbjct: 93  ----------------RFFSAIARTKQ-----------------FNLVLDFCKQLELNG- 118

Query: 127 SISYLVFNRLIILNSSPGRRKTIP--NILRQMKADKVAPHVSTFHILMKIEANDHNIEGL 184
            I++ ++   I++N      KT    ++L ++      P  +TF+ L+K    +  +   
Sbjct: 119 -IAHNIYTLNIMINCFCRCCKTCFAYSVLGKVMKLGYEPDTTTFNTLIKGLFLEGKVSEA 177

Query: 185 MKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIIL 244
           + +   M  +  +P+ V+Y  +      +   ++A   +  +E+     +  T   +I  
Sbjct: 178 VVLVDRMVENGCQPDVVTYNSIVNGICRSGDTSLALDLLRKMEERNVKADVFTYSTII-- 235

Query: 245 YGYLAKGKDLERIWATVQELPNVRSKSYVLA----IEAFGRIAQVSRAEELWLEMQSVKQ 300
              L +   ++   +  +E+     KS V+     +    +  + +    L  +M S + 
Sbjct: 236 -DSLCRDGCIDAAISLFKEMETKGIKSSVVTYNSLVRGLCKAGKWNDGALLLKDMVSREI 294

Query: 301 LKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFK 360
           +     +N ++ V+ K G + +A+ L KEM   G  PN ITY  L  G    N + E   
Sbjct: 295 VPNVITFNVLLDVFVKEGKLQEANELYKEMITRGISPNIITYNTLMDGYCMQNRLSEANN 354

Query: 361 ALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYN 420
            L+L ++          +P + T  S+I+ +     V +   +F  + K         Y+
Sbjct: 355 MLDLMVR-------NKCSPDIVTFTSLIKGYCMVKRVDDGMKVFRNISKRGLVANAVTYS 407

Query: 421 TLIKAYVKA-KIN-DPNLLRRMILGGARPDAETYSLL 455
            L++ + ++ KI     L + M+  G  PD  TY +L
Sbjct: 408 ILVQGFCQSGKIKLAEELFQEMVSHGVLPDVMTYGIL 444


>gi|414586743|tpg|DAA37314.1| TPA: hypothetical protein ZEAMMB73_981845 [Zea mays]
          Length = 524

 Score = 79.7 bits (195), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 88/370 (23%), Positives = 156/370 (42%), Gaps = 24/370 (6%)

Query: 94  NELLYNNLVIACLDKGVIKLSLEYMKKMRVLGH-SISYLVFNRLIILNSSPGRRKTIPNI 152
           N + YN ++     +G ++ +LE M++MR  G  +     +  LI      GR +    +
Sbjct: 146 NAVTYNTVIAGFCARGRVQAALEVMREMRERGGIAPDKYTYATLISGWCKIGRMEDAVKV 205

Query: 153 LRQM-KADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHA 211
             +M    +VAP    ++ L+    +   ++  ++   DM +  +     +Y +L   HA
Sbjct: 206 FDEMLTKGEVAPSAVMYNALIGGYCDVGKLDVALQYREDMVQRGIAMTVATYNLLM--HA 263

Query: 212 VARLYTVAETYVEALEKSMTGNNWSTLDVL---IILYGYLAKG---KDLERIWATVQELP 265
           +      ++ Y  A+ + M  N +S  DV    I++ GY  +G   K LE      Q+  
Sbjct: 264 LFMDARASDAY--AVLEEMQKNGFSP-DVFTYNILINGYCKEGNEKKALEVFEEMSQKGV 320

Query: 266 NVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASG 325
              + +Y   I  F R  QV   + L+              YN++I+ +C  G +++A  
Sbjct: 321 RATAVTYTSLIYVFSRKGQVQETDRLFNVAVKKGIRPDVVMYNALINSHCTGGDMERAYE 380

Query: 326 LLKEMSMNGCKPNAITYRHLALG-CFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETT 384
           ++ EM      P+ +TY  L  G C    L E           LI     R   P L + 
Sbjct: 381 IMAEMEKKRIPPDDMTYNTLMRGFCLLGRLDE--------ARTLIDEMTKRGIQPDLVSY 432

Query: 385 LSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKINDP--NLLRRMIL 442
            ++I  ++ KGD+ +A  + +E+    +      YN LI+   K +  D   NL++ M+ 
Sbjct: 433 NTLISGYSMKGDIKDALRVRDEMMDKGFNPTLMTYNALIQGLCKIRQGDDAENLMKEMVA 492

Query: 443 GGARPDAETY 452
            G  PD  TY
Sbjct: 493 KGITPDDSTY 502



 Score = 65.9 bits (159), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 86/359 (23%), Positives = 153/359 (42%), Gaps = 31/359 (8%)

Query: 45  ALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQGEKLFCCIPKDYQ---NELLYNNL 101
           ALEVM  +       P +  Y+ L+    K   +    K+F  +    +   + ++YN L
Sbjct: 166 ALEVMREMRERGGIAPDKYTYATLISGWCKIGRMEDAVKVFDEMLTKGEVAPSAVMYNAL 225

Query: 102 VIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKV 161
           +    D G + ++L+Y + M   G +++   +N L+       R      +L +M+ +  
Sbjct: 226 IGGYCDVGKLDVALQYREDMVQRGIAMTVATYNLLMHALFMDARASDAYAVLEEMQKNGF 285

Query: 162 APHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAET 221
           +P V T++IL+     + N +  ++V+ +M +  V    V+Y  L   +  +R   V ET
Sbjct: 286 SPDVFTYNILINGYCKEGNEKKALEVFEEMSQKGVRATAVTYTSL--IYVFSRKGQVQET 343

Query: 222 ---YVEALEKSMTGNNWSTLDVLIILYGYL----AKGKDLERIWATVQELPNVR----SK 270
              +  A++K +  +        +++Y  L      G D+ER +  + E+   R      
Sbjct: 344 DRLFNVAVKKGIRPD--------VVMYNALINSHCTGGDMERAYEIMAEMEKKRIPPDDM 395

Query: 271 SYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEM 330
           +Y   +  F  + ++  A  L  EM           YN++IS Y   G I  A  +  EM
Sbjct: 396 TYNTLMRGFCLLGRLDEARTLIDEMTKRGIQPDLVSYNTLISGYSMKGDIKDALRVRDEM 455

Query: 331 SMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIE 389
              G  P  +TY  L  G  K   + +G  A  L MK +  K +   TP   T +S+IE
Sbjct: 456 MDKGFNPTLMTYNALIQGLCK---IRQGDDAENL-MKEMVAKGI---TPDDSTYISLIE 507


>gi|147798083|emb|CAN67256.1| hypothetical protein VITISV_039434 [Vitis vinifera]
          Length = 722

 Score = 79.7 bits (195), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 113/475 (23%), Positives = 190/475 (40%), Gaps = 67/475 (14%)

Query: 17  WMREGFPVHRGEIFHSINRLRKLQLNK---------RALEVMEWVIRERPYRPKELDYSY 67
           W R   P    E+  S+ R+   QL K          ++E+ +W   ++ Y     D  Y
Sbjct: 57  WERLLKPFDLPELRTSLTRITPYQLCKLLELPLDVPTSMELFQWAGTQKGY-CHMFDVYY 115

Query: 68  LL--------EF--------TIKNHGISQGEKLFCCIPKDYQNELLYNNLVIACLD-KGV 110
           +L        EF         +K  GI   E LF  I K Y    L        LD +GV
Sbjct: 116 MLIDKLGAAGEFKTIDALLMQMKQEGIVFRESLFILIMKHYGRAGLPGQATRLLLDMRGV 175

Query: 111 IKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHI 170
                 +           SY V   +++  + P   K +PN+  +M +  ++P V TF +
Sbjct: 176 YSCEPTFR----------SYNVVLDVLLAGNCP---KVVPNVFYEMLSKGISPTVYTFGV 222

Query: 171 LMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSM 230
           +MK     + ++    +  DM R    PN + Y  L   HA+ ++  V E      E  +
Sbjct: 223 VMKALCLVNEVDSACALLKDMTRHGCVPNAIVYQTL--IHALXKVGRVNEVLKLLEEMLL 280

Query: 231 TGNNWSTLDVLIILYGYLAKGKDLERIWATVQEL------PNVRSKSYVLAIEAFGRIAQ 284
            G           ++G L K   +      V  +      PN  S +Y + +    R+ +
Sbjct: 281 MGCIPDVNTFNDAIHG-LCKMLRIHEAAKLVDRMLLRGFTPN--SFTYGVLMHGLCRMGK 337

Query: 285 VSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMN-GCKPNAITYR 343
           V  A  L  ++ +   +     +N++I+ Y   G +D+A  ++ E  ++ GC P+  TY 
Sbjct: 338 VDEARMLLNKVPNPNVV----LFNTLINGYVSRGRLDEAKAVMHESMLSVGCGPDIFTYN 393

Query: 344 HLALG-CFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAEN 402
            L LG C K  LV           +L+   +++   P + T   +I+ F ++G +  A N
Sbjct: 394 TLILGLCKKGYLVS--------ARELMNEMQIKGCEPNVITYTILIDRFCKEGRLEEARN 445

Query: 403 LFEELKKANYTKYTFVYNTLIKAYVK-AKINDP-NLLRRMILGGARPDAETYSLL 455
           + +E+           YN LI A  K  K+ D  N+   M   G +PD  T++ L
Sbjct: 446 VLDEMSGKGLALNAVGYNCLISALCKDEKVQDALNMFGDMSSKGCKPDIFTFNSL 500



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 93/408 (22%), Positives = 162/408 (39%), Gaps = 21/408 (5%)

Query: 56  RPYRPKELDYSYLLEFTIKNHGISQGEKLFCCIPKDYQNELLYNNLVIACLDKGVIKLSL 115
           R + P    Y  L+    +   + +   L   +P    N +L+N L+   + +G +  + 
Sbjct: 316 RGFTPNSFTYGVLMHGLCRMGKVDEARMLLNKVPN--PNVVLFNTLINGYVSRGRLDEAK 373

Query: 116 EYM-KKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKI 174
             M + M  +G       +N LI+     G   +   ++ +M+     P+V T+ IL+  
Sbjct: 374 AVMHESMLSVGCGPDIFTYNTLILGLCKKGYLVSARELMNEMQIKGCEPNVITYTILIDR 433

Query: 175 EANDHNIEGLMKVYSDMKRSEVEPNEVSY-CILATAHAVARLYTVAETYVEALEKSMTGN 233
              +  +E    V  +M    +  N V Y C+++   A+ +   V +      + S  G 
Sbjct: 434 FCKEGRLEEARNVLDEMSGKGLALNAVGYNCLIS---ALCKDEKVQDALNMFGDMSSKGC 490

Query: 234 NWSTLDVLIILYGYLAKGKDLERIWATVQEL----PNVRSKSYVLAIEAFGRIAQVSRAE 289
                    +++G L K    E      Q++        + +Y   I AF R   +  A 
Sbjct: 491 KPDIFTFNSLIFG-LCKVNKFEEALGLYQDMLLEGVIANTITYNTLIHAFLRRGAMQEAL 549

Query: 290 ELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGC 349
           +L  +M           YN +I   C+ G I+K   L ++M   G  PN I+   L  G 
Sbjct: 550 KLVNDMLFRGCPLDDITYNGLIKALCRAGNIEKGLALFEDMMSKGLNPNNISCNILINGL 609

Query: 350 FKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKK 409
            ++  ++    ALE    +I     R  TP + T  S+I    + G    A NLF++L+ 
Sbjct: 610 CRTGNIQH---ALEFLRDMIH----RGLTPDIVTYNSLINGLCKTGRAQEALNLFDKLQV 662

Query: 410 ANYTKYTFVYNTLIKAYVKAKINDPN--LLRRMILGGARPDAETYSLL 455
                    YNTLI  + K  + D    LL R +  G  P+  T+ +L
Sbjct: 663 EGICPDAITYNTLISWHCKEGMFDDAHLLLSRGVDSGFIPNEVTWYIL 710



 Score = 41.6 bits (96), Expect = 0.97,   Method: Compositional matrix adjust.
 Identities = 56/272 (20%), Positives = 108/272 (39%), Gaps = 18/272 (6%)

Query: 94  NELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNIL 153
           N + YN L+ A      ++ +L     M   G       FN LI       + +    + 
Sbjct: 458 NAVGYNCLISALCKDEKVQDALNMFGDMSSKGCKPDIFTFNSLIFGLCKVNKFEEALGLY 517

Query: 154 RQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVA 213
           + M  + V  +  T++ L+        ++  +K+ +DM       ++++Y  L  A   A
Sbjct: 518 QDMLLEGVIANTITYNTLIHAFLRRGAMQEALKLVNDMLFRGCPLDDITYNGLIKALCRA 577

Query: 214 -RLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQEL------PN 266
             +      + + + K +  NN S      IL   L +  +++     ++++      P+
Sbjct: 578 GNIEKGLALFEDMMSKGLNPNNISC----NILINGLCRTGNIQHALEFLRDMIHRGLTPD 633

Query: 267 VRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGL 326
           +   +Y   I    +  +   A  L+ ++Q          YN++IS +CK G  D A  L
Sbjct: 634 I--VTYNSLINGLCKTGRAQEALNLFDKLQVEGICPDAITYNTLISWHCKEGMFDDAHLL 691

Query: 327 LKEMSMNGCKPNAITYRHLALGCFKSNLVEEG 358
           L     +G  PN +T+  L      SN ++EG
Sbjct: 692 LSRGVDSGFIPNEVTWYILV-----SNFIKEG 718


>gi|296081530|emb|CBI20053.3| unnamed protein product [Vitis vinifera]
          Length = 634

 Score = 79.7 bits (195), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 81/364 (22%), Positives = 149/364 (40%), Gaps = 14/364 (3%)

Query: 94  NELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNIL 153
           N + YN ++     +G I+ +   +  MRV G       +  LI      GR +    + 
Sbjct: 261 NVVSYNTIIHGYSSRGNIEGARRILDAMRVKGIEPDSYTYGSLISGMCKEGRLEEASGLF 320

Query: 154 RQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVA 213
            +M    + P+  T++ L+    N  ++E       +M +  + P+  +Y +L  A  + 
Sbjct: 321 DKMVEIGLVPNAVTYNTLIDGYCNKGDLERAFSYRDEMVKKGIMPSVSTYNLLVHALFME 380

Query: 214 RLYTVAETYVEALEKSMTGNNWSTLDVLIILY---GYLAKGKDLERIWATVQELPNVRSK 270
                A+  ++ + K     +  T ++LI  Y   G   K  DL     +    P     
Sbjct: 381 GRMGEADDMIKEMRKKGIIPDAITYNILINGYSRCGNAKKAFDLHNEMLSKGIEPT--HV 438

Query: 271 SYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEM 330
           +Y   I    R  ++  A++L+ ++           +N+++  +C NG +++A  LLKEM
Sbjct: 439 TYTSLIYVLSRRNRMKEADDLFEKILDQGVSPDVIMFNAMVDGHCANGNVERAFMLLKEM 498

Query: 331 SMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEI 390
                 P+ +T+  L  G  +   VEE          L+   K R   P   +  ++I  
Sbjct: 499 DRKSVPPDEVTFNTLMQGRCREGKVEE-------ARMLLDEMKRRGIKPDHISYNTLISG 551

Query: 391 FAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKIND--PNLLRRMILGGARPD 448
           +  +GD+ +A  + +E+    +      YN LIK   K +  D    LL+ M+  G  PD
Sbjct: 552 YGRRGDIKDAFRVRDEMLSIGFNPTLLTYNALIKCLCKNQEGDLAEELLKEMVNKGISPD 611

Query: 449 AETY 452
             TY
Sbjct: 612 DSTY 615



 Score = 62.0 bits (149), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 92/393 (23%), Positives = 170/393 (43%), Gaps = 44/393 (11%)

Query: 29  IFHSINRLRKLQLNKRALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQGEKLF--- 85
           I H  +    ++  +R L+ M    R +   P    Y  L+    K   + +   LF   
Sbjct: 268 IIHGYSSRGNIEGARRILDAM----RVKGIEPDSYTYGSLISGMCKEGRLEEASGLFDKM 323

Query: 86  ---CCIPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSS 142
                +P    N + YN L+    +KG ++ +  Y  +M   G   S   +N L+     
Sbjct: 324 VEIGLVP----NAVTYNTLIDGYCNKGDLERAFSYRDEMVKKGIMPSVSTYNLLVHALFM 379

Query: 143 PGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVS 202
            GR     +++++M+   + P   T++IL+   +   N +    ++++M    +EP  V+
Sbjct: 380 EGRMGEADDMIKEMRKKGIIPDAITYNILINGYSRCGNAKKAFDLHNEMLSKGIEPTHVT 439

Query: 203 YCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLI---ILYGYLAKGKDLERIWA 259
           Y  L   + ++R   + E   +  EK +  +   + DV++   ++ G+ A G ++ER + 
Sbjct: 440 YTSL--IYVLSRRNRMKEAD-DLFEKIL--DQGVSPDVIMFNAMVDGHCANG-NVERAFM 493

Query: 260 TVQEL------PNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISV 313
            ++E+      P+    ++   ++   R  +V  A  L  EM+          YN++IS 
Sbjct: 494 LLKEMDRKSVPPD--EVTFNTLMQGRCREGKVEEARMLLDEMKRRGIKPDHISYNTLISG 551

Query: 314 YCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKK 373
           Y + G I  A  +  EM   G  P  +TY  L + C   N  +EG  A EL +K +  K 
Sbjct: 552 YGRRGDIKDAFRVRDEMLSIGFNPTLLTYNAL-IKCLCKN--QEGDLAEEL-LKEMVNKG 607

Query: 374 VRSSTPWLETTLSIIEIFAEKGDVGNAENLFEE 406
           +   +P   T LS+IE       +GN + L E+
Sbjct: 608 I---SPDDSTYLSLIE------GMGNVDTLVED 631



 Score = 53.5 bits (127), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 52/230 (22%), Positives = 103/230 (44%), Gaps = 28/230 (12%)

Query: 238 LDVLIILYGYLAKGKDLERIWATVQE---LPNVRSKSYVLAIEAFGRIAQVSRAEELWLE 294
            D+L+ +   L +  +  + +  ++E   +P + + + +L++  F ++ ++  A  L+ E
Sbjct: 160 FDLLVRVCCELRRADEAFKCFYMMKEKGIVPKIETCNDMLSL--FLKLNRMEMAWVLYAE 217

Query: 295 MQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNL 354
           M  ++       +N +++V CK G + KA   +  M   G KPN ++Y          N 
Sbjct: 218 MFRLRISSTVYTFNIMVNVLCKEGKLKKAREFIGFMEGLGFKPNVVSY----------NT 267

Query: 355 VEEGFKA---LELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKAN 411
           +  G+ +   +E   +++   +V+   P   T  S+I    ++G +  A  LF+++ +  
Sbjct: 268 IIHGYSSRGNIEGARRILDAMRVKGIEPDSYTYGSLISGMCKEGRLEEASGLFDKMVEIG 327

Query: 412 YTKYTFVYNTLIKAYVKAKINDPNLLR------RMILGGARPDAETYSLL 455
                  YNTLI  Y     N  +L R       M+  G  P   TY+LL
Sbjct: 328 LVPNAVTYNTLIDGYC----NKGDLERAFSYRDEMVKKGIMPSVSTYNLL 373



 Score = 50.8 bits (120), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 74/342 (21%), Positives = 142/342 (41%), Gaps = 61/342 (17%)

Query: 160 KVAPHVSTFHILMKIEAND-----------------------------------HNIEGL 184
           +++  V TF+I++ +   +                                    NIEG 
Sbjct: 222 RISSTVYTFNIMVNVLCKEGKLKKAREFIGFMEGLGFKPNVVSYNTIIHGYSSRGNIEGA 281

Query: 185 MKVYSDMKRSEVEPNEVSYCILATAHAV-ARLYTVAETYVEALEKSMTGN--NWSTLDVL 241
            ++   M+   +EP+  +Y  L +      RL   +  + + +E  +  N   ++TL   
Sbjct: 282 RRILDAMRVKGIEPDSYTYGSLISGMCKEGRLEEASGLFDKMVEIGLVPNAVTYNTL--- 338

Query: 242 IILYGYLAKGKDLERIWATVQE------LPNVRSKSYVLAIEAFGRIAQVSRAEELWLEM 295
             + GY  KG DLER ++   E      +P+V   +Y L + A     ++  A+++  EM
Sbjct: 339 --IDGYCNKG-DLERAFSYRDEMVKKGIMPSV--STYNLLVHALFMEGRMGEADDMIKEM 393

Query: 296 QSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLV 355
           +    +     YN +I+ Y + G   KA  L  EM   G +P  +TY  L     + N +
Sbjct: 394 RKKGIIPDAITYNILINGYSRCGNAKKAFDLHNEMLSKGIEPTHVTYTSLIYVLSRRNRM 453

Query: 356 EEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKY 415
           +E   A +L  K++     +  +P +    ++++     G+V  A  L +E+ + +    
Sbjct: 454 KE---ADDLFEKILD----QGVSPDVIMFNAMVDGHCANGNVERAFMLLKEMDRKSVPPD 506

Query: 416 TFVYNTLIKAYVK-AKINDPN-LLRRMILGGARPDAETYSLL 455
              +NTL++   +  K+ +   LL  M   G +PD  +Y+ L
Sbjct: 507 EVTFNTLMQGRCREGKVEEARMLLDEMKRRGIKPDHISYNTL 548


>gi|147833323|emb|CAN61988.1| hypothetical protein VITISV_026694 [Vitis vinifera]
          Length = 553

 Score = 79.7 bits (195), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 95/451 (21%), Positives = 186/451 (41%), Gaps = 38/451 (8%)

Query: 24  VHRGEI------FHSINRLRKLQLNKRALEVMEWVIRERPYRPKELDYSYLLEFTIKNHG 77
           V+RG+I         I    ++   K+A  VME ++ +    P  + Y+ L+    K+  
Sbjct: 84  VYRGDIPDIIPCTSLIRGFCRIGKTKKATWVME-ILEQSGAVPDVITYNVLISGYCKSGE 142

Query: 78  ISQGEKLFCCIPKDYQNE----LLYNNLVIACLDKGVIKLSLEYMKKM---RVLGHSISY 130
           I    ++      D  N     + YN ++    D G +K ++E + +          I+Y
Sbjct: 143 IDNALQVL-----DRMNVAPDVVTYNTILRTLCDSGKLKQAMEVLDRQLQKECYPDVITY 197

Query: 131 LVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSD 190
            +        S  G+      +L +M+     P V T+++L+     +  ++  +K  ++
Sbjct: 198 TILIEATCKESGVGQAM---KLLDEMRNKGSKPDVVTYNVLINGICKEGRLDEAIKFLNN 254

Query: 191 MKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAK 250
           M     +PN +++ I+  +      +  AE  +  + +     +  T ++LI    +L +
Sbjct: 255 MPSYGCQPNVITHNIILRSMCSTGRWMDAEKLLSDMLRKGCSPSVVTFNILI---NFLCR 311

Query: 251 GKDLERIWATVQELP----NVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQ 306
              L R    ++++P       S SY   +  F +  ++ RA E    M S         
Sbjct: 312 QGLLGRAIDILEKMPMHGCTPNSLSYNPLLHGFCKEKKMDRAIEYLDIMVSRGCYPDIVT 371

Query: 307 YNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGM 366
           YN++++  CK+G +D A  +L ++S  GC P  ITY  +  G  K    E         +
Sbjct: 372 YNTLLTALCKDGKVDVAVEILNQLSSKGCSPVLITYNTVIDGLSKVGKTER-------AI 424

Query: 367 KLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAY 426
           KL+   + +   P + T  S++   + +G V  A   F +L+          YN+++   
Sbjct: 425 KLLDEMRRKGLKPDIITYSSLVSGLSREGKVDEAIKFFHDLEGLGIRPNAITYNSIMLGL 484

Query: 427 VKAKINDP--NLLRRMILGGARPDAETYSLL 455
            K++  D   + L  MI    +P   TY++L
Sbjct: 485 CKSRQTDRAIDFLAYMISKRCKPTEATYTIL 515



 Score = 64.7 bits (156), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 74/318 (23%), Positives = 128/318 (40%), Gaps = 48/318 (15%)

Query: 144 GRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSY 203
           G+ K    ++  ++     P V T+++L+        I+  ++V   + R  V P+ V+Y
Sbjct: 106 GKTKKATWVMEILEQSGAVPDVITYNVLISGYCKSGEIDNALQV---LDRMNVAPDVVTY 162

Query: 204 -CILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQ 262
             IL T     +L    E     L+K                                 +
Sbjct: 163 NTILRTLCDSGKLKQAMEVLDRQLQK---------------------------------E 189

Query: 263 ELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDK 322
             P+V   +Y + IEA  + + V +A +L  EM++         YN +I+  CK G +D+
Sbjct: 190 CYPDV--ITYTILIEATCKESGVGQAMKLLDEMRNKGSKPDVVTYNVLINGICKEGRLDE 247

Query: 323 ASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLE 382
           A   L  M   GC+PN IT+  +     +S      +   E   KL++    +  +P + 
Sbjct: 248 AIKFLNNMPSYGCQPNVITHNII----LRSMCSTGRWMDAE---KLLSDMLRKGCSPSVV 300

Query: 383 TTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKINDPNL--LRRM 440
           T   +I     +G +G A ++ E++     T  +  YN L+  + K K  D  +  L  M
Sbjct: 301 TFNILINFLCRQGLLGRAIDILEKMPMHGCTPNSLSYNPLLHGFCKEKKMDRAIEYLDIM 360

Query: 441 ILGGARPDAETYSLLKLA 458
           +  G  PD  TY+ L  A
Sbjct: 361 VSRGCYPDIVTYNTLLTA 378



 Score = 56.2 bits (134), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 84/378 (22%), Positives = 151/378 (39%), Gaps = 50/378 (13%)

Query: 43  KRALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQGEKLFCCIPKDYQNE------L 96
           K+A+EV++  +++  Y P  + Y+ L+E T K  G+ Q  KL      + +N+      +
Sbjct: 176 KQAMEVLDRQLQKECY-PDVITYTILIEATCKESGVGQAMKLL----DEMRNKGSKPDVV 230

Query: 97  LYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQM 156
            YN L+     +G +  +++++  M   G   + +  N ++    S GR      +L  M
Sbjct: 231 TYNVLINGICKEGRLDEAIKFLNNMPSYGCQPNVITHNIILRSMCSTGRWMDAEKLLSDM 290

Query: 157 KADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLY 216
                +P V TF+IL+        +   + +   M      PN +SY  L       +  
Sbjct: 291 LRKGCSPSVVTFNILINFLCRQGLLGRAIDILEKMPMHGCTPNSLSYNPLLHGFCKEKKM 350

Query: 217 TVAETYVEAL------EKSMTGNNWST-------LDVLI-ILYGYLAKG----------- 251
             A  Y++ +         +T N   T       +DV + IL    +KG           
Sbjct: 351 DRAIEYLDIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQLSSKGCSPVLITYNTV 410

Query: 252 -KDLERIWAT---VQELPNVRSK-------SYVLAIEAFGRIAQVSRAEELWLEMQSVKQ 300
              L ++  T   ++ L  +R K       +Y   +    R  +V  A + + +++ +  
Sbjct: 411 IDGLSKVGKTERAIKLLDEMRRKGLKPDIITYSSLVSGLSREGKVDEAIKFFHDLEGLGI 470

Query: 301 LKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFK 360
                 YNS++   CK+   D+A   L  M    CKP   TY  L  G     L +E   
Sbjct: 471 RPNAITYNSIMLGLCKSRQTDRAIDFLAYMISKRCKPTEATYTILIEGIAYEGLAKE--- 527

Query: 361 ALELGMKLITTKKVRSST 378
           AL+L  +L +   V+ S+
Sbjct: 528 ALDLLNELCSRGLVKKSS 545


>gi|356562783|ref|XP_003549648.1| PREDICTED: pentatricopeptide repeat-containing protein At1g74850,
           chloroplastic-like [Glycine max]
          Length = 859

 Score = 79.7 bits (195), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 95/435 (21%), Positives = 180/435 (41%), Gaps = 69/435 (15%)

Query: 26  RGEIFHSINRLR-KLQLNKRALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQGEKL 84
           RG I   ++  + KL LN  AL   E+  R    R   L + Y+             ++ 
Sbjct: 84  RGSIARCLDPFKNKLSLNDFALVFKEFAQRGDWQRSLRL-FKYM-------------QRQ 129

Query: 85  FCCIPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPG 144
             C P    NE +Y  ++     +G++    E   +M   G + +  V+  +I      G
Sbjct: 130 IWCKP----NEHIYTIMITLLGREGLLDKCREVFDEMPSNGVARTVYVYTAVINAYGRNG 185

Query: 145 RRKTIPNILRQMKADKVAPHVSTFHILMKIEANDH-NIEGLMKVYSDMKRSEVEPNEVSY 203
           +      +L  MK ++V+P + T++ ++   A    + EGL+ ++++M+   ++P+ ++Y
Sbjct: 186 QFHASLELLNGMKQERVSPSILTYNTVINACARGGLDWEGLLGLFAEMRHEGIQPDVITY 245

Query: 204 CILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQE 263
             L  A A                                   +   G + E ++ T+ E
Sbjct: 246 NTLLGACA-----------------------------------HRGLGDEAEMVFRTMNE 270

Query: 264 ---LPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFI 320
              +P++ + SY+  ++ FG++ ++ +  EL  EM+S   L     YN ++  Y + G I
Sbjct: 271 SGIVPDINTYSYL--VQTFGKLNRLEKVSELLREMESGGNLPDITSYNVLLEAYAELGSI 328

Query: 321 DKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPW 380
            +A  + ++M   GC  NA TY  L L  +  +   +  + + L M      KV ++ P 
Sbjct: 329 KEAMDVFRQMQAAGCVANAATYSVL-LNLYGKHGRYDDVRDIFLEM------KVSNTDPD 381

Query: 381 LETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKI--NDPNLLR 438
             T   +I++F E G       LF ++ + N       Y  LI A  K  +  +   +L 
Sbjct: 382 AGTYNILIQVFGEGGYFKEVVTLFHDMVEENVEPNMETYEGLIFACGKGGLYEDAKKILL 441

Query: 439 RMILGGARPDAETYS 453
            M   G  P ++ Y+
Sbjct: 442 HMNEKGIVPSSKAYT 456



 Score = 78.6 bits (192), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 79/348 (22%), Positives = 142/348 (40%), Gaps = 47/348 (13%)

Query: 98  YNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMK 157
           YN L+ A  + G IK +++  ++M+  G   +   ++ L+ L    GR   + +I  +MK
Sbjct: 315 YNVLLEAYAELGSIKEAMDVFRQMQAAGCVANAATYSVLLNLYGKHGRYDDVRDIFLEMK 374

Query: 158 ADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYT 217
                P   T++IL+++       + ++ ++ DM    VEPN  +Y  L  A     LY 
Sbjct: 375 VSNTDPDAGTYNILIQVFGEGGYFKEVVTLFHDMVEENVEPNMETYEGLIFACGKGGLY- 433

Query: 218 VAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNV-RSKSYVLAI 276
                                             +D ++I   + E   V  SK+Y   I
Sbjct: 434 ----------------------------------EDAKKILLHMNEKGIVPSSKAYTGVI 459

Query: 277 EAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCK 336
           EAFG+ A    A  ++  M  V      E YNS I  + + G   +A  +L  M+ +G K
Sbjct: 460 EAFGQAALYEEALVVFNTMNEVGSNPTVETYNSFIHAFARGGLYKEAEAILSRMNESGLK 519

Query: 337 PNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSII-EIFAEKG 395
            +  ++  +     +    EE  K+          +  +++    E TL ++  ++   G
Sbjct: 520 RDVHSFNGVIKAFRQGGQYEEAVKSY--------VEMEKANCEPNELTLEVVLSVYCSAG 571

Query: 396 DVGNAENLFEELKKANYTKYTFVYNTLIKAYVK-AKINDP-NLLRRMI 441
            V  +E  F+E+K +        Y  ++  Y K  ++ND  NL+  MI
Sbjct: 572 LVDESEEQFQEIKASGILPSVMCYCLMLALYAKNDRLNDAYNLIDEMI 619



 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 46/188 (24%), Positives = 81/188 (43%), Gaps = 12/188 (6%)

Query: 272 YVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMS 331
           Y + I   GR   + +  E++ EM S    +    Y +VI+ Y +NG    +  LL  M 
Sbjct: 139 YTIMITLLGREGLLDKCREVFDEMPSNGVARTVYVYTAVINAYGRNGQFHASLELLNGMK 198

Query: 332 MNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIF 391
                P+ +TY  +   C +  L  EG       + L    +     P + T  +++   
Sbjct: 199 QERVSPSILTYNTVINACARGGLDWEGL------LGLFAEMRHEGIQPDVITYNTLLGAC 252

Query: 392 AEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVK----AKINDPNLLRRMILGGARP 447
           A +G    AE +F  + ++        Y+ L++ + K     K+++  LLR M  GG  P
Sbjct: 253 AHRGLGDEAEMVFRTMNESGIVPDINTYSYLVQTFGKLNRLEKVSE--LLREMESGGNLP 310

Query: 448 DAETYSLL 455
           D  +Y++L
Sbjct: 311 DITSYNVL 318


>gi|227463004|gb|ACP39954.1| pentatricopeptide repeat protein [Gossypium hirsutum]
 gi|227463006|gb|ACP39955.1| pentatricopeptide repeat protein [Gossypium hirsutum]
          Length = 547

 Score = 79.7 bits (195), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 91/425 (21%), Positives = 169/425 (39%), Gaps = 59/425 (13%)

Query: 45  ALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQGEKLFCCIPKDYQNELLYNNLVIA 104
           AL    W  +++ ++     Y+ L+E      G  +  KL   +  + ++  L N    A
Sbjct: 140 ALSFFTWAEKQKGFKYNTESYNALIEAL----GKIKQFKLIRSLVNEMKSRKLLNKDTFA 195

Query: 105 CLDKG-----VIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKAD 159
            + +       ++ ++E  ++M   G  +    FNRL+         +    +  +MK  
Sbjct: 196 LISRRHARARKVEEAIEAFERMEEFGFKLETSDFNRLLDTLCKSRHVEKANKVFDKMKKR 255

Query: 160 KVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVA 219
           +  P + ++ IL++    +HN+  L +VY +MK    EP+ V+Y IL +A+  A+ Y  A
Sbjct: 256 RFVPDIKSYTILLEGWGKEHNLLRLDEVYLEMKYDGFEPDVVTYGILISAYCKAKKYDAA 315

Query: 220 ETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSKSYVLAIEAF 279
                 +E                                  +  P+V    Y   I   
Sbjct: 316 IELFHEMEAK------------------------------NCKPTPHV----YCTLINGL 341

Query: 280 GRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNA 339
           G   ++S A E +   +S         YNS++  YC +  ID A  ++ EM  +   PN+
Sbjct: 342 GSEKRLSEALEFFERFKSCGFTPEAPTYNSLVGAYCWSMRIDDAFQVIDEMRKHSAGPNS 401

Query: 340 ITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLS----IIEIFAEKG 395
            TY  +     K+    E +   +            S+ P  E T+S    I+ +F  + 
Sbjct: 402 RTYDIILHHLIKARRTNEAYFRFQ----------KMSNEPGCEPTVSTYEIIVRMFCNED 451

Query: 396 DVGNAENLFEELKKANYTKYTFVYNTLIKAYV-KAKINDP-NLLRRMILGGARPDAETYS 453
            V  A+ +++++K         +Y+ LI +   K K+ +     + M+  G RP A+ +S
Sbjct: 452 RVDLAKQVWDQMKAKGVLPGMHMYSDLITSLCHKNKLGEACKYFQEMLDAGIRPPAKMFS 511

Query: 454 LLKLA 458
            LK A
Sbjct: 512 NLKQA 516


>gi|147767652|emb|CAN77908.1| hypothetical protein VITISV_033177 [Vitis vinifera]
          Length = 1563

 Score = 79.7 bits (195), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 73/310 (23%), Positives = 140/310 (45%), Gaps = 26/310 (8%)

Query: 156  MKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARL 215
            MK   V   V TF IL++           +  ++ M+    +P+++++ ++ ++ +  R 
Sbjct: 1204 MKTRNVEIPVETFTILVRRYVKAGLAAEAVHAFNRMEDYGCKPDKIAFSVVISSLSKKRR 1263

Query: 216  YTVAETYVEALEKSMTGNNWSTLDVLI---ILYGYLAKG--KDLERIWATVQE---LPNV 267
               A+++ ++L+           DV++   +++G+   G   + ER++  ++     PNV
Sbjct: 1264 AIEAQSFFDSLKDRFEP------DVVVYTSLVHGWCRAGNISEAERVFGEMKMAGIXPNV 1317

Query: 268  RSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLL 327
             +  Y + I+A  R  Q++RA +++ EM  V        +N+++ V+ K G  +K   + 
Sbjct: 1318 YT--YSIVIDALCRSGQITRAHDVFSEMIDVGCDPNAITFNNLMRVHVKAGRTEKVLQVY 1375

Query: 328  KEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSI 387
             +M   GC P+AITY  L     + + +EE  K L   +K        S  P       I
Sbjct: 1376 NQMKRLGCPPDAITYNFLIESHCRDDNLEEAVKILN-SVKKGCNLNASSFNP-------I 1427

Query: 388  IEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKINDP--NLLRRMILGGA 445
                ++ GDV +A  +F ++K       T  YN L++ +   K  D    L + M     
Sbjct: 1428 FGCISKLGDVNSAHRMFAKMKDLKCRPNTVTYNILMRMFADKKSTDMVLKLRKEMDENEI 1487

Query: 446  RPDAETYSLL 455
             P+A TY +L
Sbjct: 1488 EPNANTYRVL 1497



 Score = 55.8 bits (133), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 68/350 (19%), Positives = 141/350 (40%), Gaps = 42/350 (12%)

Query: 59   RPKELDYSYLLEFTIKNHGISQGEKLFCCIPKDYQNELL-YNNLVIACLDKGVIKLSLEY 117
            +P ++ +S ++    K     + +  F  +   ++ +++ Y +LV      G I  +   
Sbjct: 1245 KPDKIAFSVVISSLSKKRRAIEAQSFFDSLKDRFEPDVVVYTSLVHGWCRAGNISEAERV 1304

Query: 118  MKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEAN 177
              +M++ G   +   ++ +I      G+     ++  +M      P+  TF+ LM++   
Sbjct: 1305 FGEMKMAGIXPNVYTYSIVIDALCRSGQITRAHDVFSEMIDVGCDPNAITFNNLMRVHVK 1364

Query: 178  DHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWST 237
                E +++VY+ MKR    P+ ++Y  L  +H             + LE+++       
Sbjct: 1365 AGRTEKVLQVYNQMKRLGCPPDAITYNFLIESHCRD----------DNLEEAV------- 1407

Query: 238  LDVLIILYGYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQS 297
                              +I  +V++  N+ + S+        ++  V+ A  ++ +M+ 
Sbjct: 1408 ------------------KILNSVKKGCNLNASSFNPIFGCISKLGDVNSAHRMFAKMKD 1449

Query: 298  VKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEE 357
            +K    T  YN ++ ++      D    L KEM  N  +PNA TYR L +  F    +  
Sbjct: 1450 LKCRPNTVTYNILMRMFADKKSTDMVLKLRKEMDENEIEPNANTYRVL-ISTFCG--IGH 1506

Query: 358  GFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEEL 407
               A     ++I  K +R S P  E  L  +    + G +   E L E++
Sbjct: 1507 WNNAYSFFKEMIEEKCLRPSLPVYEMVLQQLR---KAGQLKKHEELVEKM 1553



 Score = 46.2 bits (108), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 46/200 (23%), Positives = 82/200 (41%), Gaps = 10/200 (5%)

Query: 258  WATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKN 317
            WAT  E      + Y+  I+  G++ Q   A +L   M++       E +  ++  Y K 
Sbjct: 1167 WATNLEEFGHSPEPYMEMIDLAGKVRQFDLAWQLIDLMKTRNVEIPVETFTILVRRYVKA 1226

Query: 318  GFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSS 377
            G   +A      M   GCKP+ I +  +     K        +A+E       + K R  
Sbjct: 1227 GLAAEAVHAFNRMEDYGCKPDKIAFSVVISSLSKKR------RAIE-AQSFFDSLKDRFE 1279

Query: 378  TPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAK--INDPN 435
             P +    S++  +   G++  AE +F E+K A      + Y+ +I A  ++       +
Sbjct: 1280 -PDVVVYTSLVHGWCRAGNISEAERVFGEMKMAGIXPNVYTYSIVIDALCRSGQITRAHD 1338

Query: 436  LLRRMILGGARPDAETYSLL 455
            +   MI  G  P+A T++ L
Sbjct: 1339 VFSEMIDVGCDPNAITFNNL 1358



 Score = 44.7 bits (104), Expect = 0.098,   Method: Compositional matrix adjust.
 Identities = 66/316 (20%), Positives = 134/316 (42%), Gaps = 30/316 (9%)

Query: 36   LRKLQLNKRALEVMEWV--IRERPYRPKELDYSYLLEFTIKNHGISQGEKLF--CCIPKD 91
            +  L   +RA+E   +   +++R + P  + Y+ L+    +   IS+ E++F    +   
Sbjct: 1255 ISSLSKKRRAIEAQSFFDSLKDR-FEPDVVVYTSLVHGWCRAGNISEAERVFGEMKMAGI 1313

Query: 92   YQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPN 151
              N   Y+ ++ A    G I  + +   +M  +G   + + FN L+ ++   GR + +  
Sbjct: 1314 XPNVYTYSIVIDALCRSGQITRAHDVFSEMIDVGCDPNAITFNNLMRVHVKAGRTEKVLQ 1373

Query: 152  ILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKR----SEVEPNEVSYCI-- 205
            +  QMK     P   T++ L++    D N+E  +K+ + +K+    +    N +  CI  
Sbjct: 1374 VYNQMKRLGCPPDAITYNFLIESHCRDDNLEEAVKILNSVKKGCNLNASSFNPIFGCISK 1433

Query: 206  LATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQEL- 264
            L   ++  R++   +  ++    ++T N         IL    A  K  + +    +E+ 
Sbjct: 1434 LGDVNSAHRMFAKMKD-LKCRPNTVTYN---------ILMRMFADKKSTDMVLKLRKEMD 1483

Query: 265  -----PNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKAT-EQYNSVISVYCKNG 318
                 PN  + +Y + I  F  I   + A   + EM   K L+ +   Y  V+    K G
Sbjct: 1484 ENEIEPN--ANTYRVLISTFCGIGHWNNAYSFFKEMIEEKCLRPSLPVYEMVLQQLRKAG 1541

Query: 319  FIDKASGLLKEMSMNG 334
             + K   L+++M   G
Sbjct: 1542 QLKKHEELVEKMVNRG 1557


>gi|414868427|tpg|DAA46984.1| TPA: hypothetical protein ZEAMMB73_842284 [Zea mays]
          Length = 674

 Score = 79.7 bits (195), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 98/452 (21%), Positives = 187/452 (41%), Gaps = 48/452 (10%)

Query: 15  QSWMREGFPVHRGEIFHSINRLRKLQLNKRALEVMEWVIRERPYRPKELDYSYLLEFTIK 74
           +SW R G   +  E+F  + RL                      RP    Y+ ++  +++
Sbjct: 153 ESWGRLGLAHYAHEVFVQVPRL--------------------GLRPSTAIYNAVIAASVR 192

Query: 75  NHGISQGEKLFCCIPKD--YQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLV 132
              +      F  +P D    +   YN LV     +G++  +L  +K+M   G   + + 
Sbjct: 193 AGAVDAAYLRFQQMPADGCRPDCFTYNTLVHGVCRRGIVDEALRLVKQMERAGIRPNVVT 252

Query: 133 FNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMK 192
           +  L+    +  R +    +L +MK   V+   +T+  L+         E   ++ S+  
Sbjct: 253 YTMLVDGFCNASRVEEAVCVLERMKEKGVSATEATYRSLVHGAFRCLEKERAYRMLSEWI 312

Query: 193 RSEVEPNEVSYCILATAHAVARLYTVAETYV--EALE--KSMTGNNW----STLDVLIIL 244
            S+   + ++Y  L        LY +++  +  EA+E  K M+   +    +T  ++I  
Sbjct: 313 ESDPTLHSIAYHTL--------LYCLSKNDMDKEAVELAKKMSKRGYLLGSTTFSIVIPC 364

Query: 245 YGYLAKGKDL-ERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKA 303
              + +  DL E +   +++  N+    Y++ I++F R   +S+A + + +M S   L +
Sbjct: 365 AVKVLESSDLCELVDDFIKKGGNLGFDMYIMIIKSFLRCKDISKANKYFSQMVSDGLLSS 424

Query: 304 TEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALE 363
            E YN VI  + K G +++A   +K M  +G  PN +T+  L  G  K   V +    L+
Sbjct: 425 VESYNIVIDCFAKAGEVERALETIKVMQESGFSPNLVTFNTLINGYLKLGNVHDAKAFLK 484

Query: 364 LGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLI 423
           + M+           P + T  S+I+       + +A N F E+ +         YN LI
Sbjct: 485 MVME-------HGLMPDVITFTSLIDGLCHTHQLDDAFNCFSEMSEWGVRPNVQTYNVLI 537

Query: 424 KAYVKAK--INDPNLLRRMILGGARPDAETYS 453
                A        LL +M + G  PDA +++
Sbjct: 538 HGLCSAGHVSKAIELLNKMKMDGITPDAYSFN 569



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 33/148 (22%), Positives = 70/148 (47%), Gaps = 7/148 (4%)

Query: 276 IEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGC 335
           +E++GR+     A E+++++  +    +T  YN+VI+   + G +D A    ++M  +GC
Sbjct: 152 VESWGRLGLAHYAHEVFVQVPRLGLRPSTAIYNAVIAASVRAGAVDAAYLRFQQMPADGC 211

Query: 336 KPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKG 395
           +P+  TY  L  G  +  +V+E        ++L+   +     P + T   +++ F    
Sbjct: 212 RPDCFTYNTLVHGVCRRGIVDE-------ALRLVKQMERAGIRPNVVTYTMLVDGFCNAS 264

Query: 396 DVGNAENLFEELKKANYTKYTFVYNTLI 423
            V  A  + E +K+   +     Y +L+
Sbjct: 265 RVEEAVCVLERMKEKGVSATEATYRSLV 292



 Score = 50.1 bits (118), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 71/308 (23%), Positives = 130/308 (42%), Gaps = 22/308 (7%)

Query: 100 NLVIACLDK-----GVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNI-- 152
           ++VI C  K      + +L  +++KK   LG       F+  I++  S  R K I     
Sbjct: 359 SIVIPCAVKVLESSDLCELVDDFIKKGGNLG-------FDMYIMIIKSFLRCKDISKANK 411

Query: 153 -LRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHA 211
              QM +D +   V +++I++   A    +E  ++    M+ S   PN V++  L   + 
Sbjct: 412 YFSQMVSDGLLSSVESYNIVIDCFAKAGEVERALETIKVMQESGFSPNLVTFNTLINGYL 471

Query: 212 VARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQEL---PNVR 268
                  A+ +++ + +     +  T   LI    +  +  D    ++ + E    PNV 
Sbjct: 472 KLGNVHDAKAFLKMVMEHGLMPDVITFTSLIDGLCHTHQLDDAFNCFSEMSEWGVRPNV- 530

Query: 269 SKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLK 328
            ++Y + I        VS+A EL  +M+          +N+ I  +C+   I+KA  L  
Sbjct: 531 -QTYNVLIHGLCSAGHVSKAIELLNKMKMDGITPDAYSFNAPILSFCRMRKIEKAQKLFN 589

Query: 329 EMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPW-LETTLSI 387
           +MS  G  P++ TY  L         V+E  K + L M+ I+    +  T W +   L+ 
Sbjct: 590 DMSRYGVSPDSYTYNALIKALCDERRVDEA-KEIILAMESISCIGTKQHTYWPVVGALTK 648

Query: 388 IEIFAEKG 395
           +  F+E G
Sbjct: 649 MGRFSEAG 656


>gi|255539196|ref|XP_002510663.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223551364|gb|EEF52850.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 695

 Score = 79.3 bits (194), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 88/378 (23%), Positives = 165/378 (43%), Gaps = 26/378 (6%)

Query: 98  YNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMK 157
           YN L+   +  G++K +   + +M   G S     ++ LI   S+ GR ++   +L++M+
Sbjct: 329 YNGLLKGYVKAGMLKDAEFIVSEMERSGVSPDECTYSLLIDAYSNAGRWESARIVLKEME 388

Query: 158 ADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCIL-ATAHAVARLY 216
           A+ + P+   F  ++    +    +   +V  +MK S V P+   Y ++  T    + L 
Sbjct: 389 ANNIMPNSYVFSRILASYRDRGEWQKSFQVLKEMKNSGVRPDRHFYNVMIDTFGKFSCLD 448

Query: 217 TVAETYVEALEKSMTGNN--WSTLDVLIILYGYLAKGKDLERIWATVQEL------PNVR 268
              +T+ + L + +  +   W+TL           K +  ER     +E+      P V 
Sbjct: 449 HAMDTFDKMLSEGIQPDTVTWNTL------IDCHCKAELHERAEELFEEMMEKGFSPCV- 501

Query: 269 SKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLK 328
             ++ + I +FG   +    + L   M+S+  L     Y ++I +Y K+G    A   L+
Sbjct: 502 -TTFNIMINSFGEQERWDDVKTLMGNMRSLGLLPNVVTYTTLIDIYGKSGRFSDAIECLE 560

Query: 329 EMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSII 388
           +M   G KP++  Y  L     +  L E+   A  L        +  S  P L    S+I
Sbjct: 561 DMKSAGLKPSSTMYNALINAYAQKGLSEQAVNAFRL-------MRADSLKPSLLALNSLI 613

Query: 389 EIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKA-KIND-PNLLRRMILGGAR 446
             F E      A ++ + +K+ +       Y TL+KA ++  K N  P++   MIL G  
Sbjct: 614 NAFGEDRRDAEAFSVLKYMKENDLKPDVVTYTTLMKALIRVDKFNKVPSVYEEMILAGCT 673

Query: 447 PDAETYSLLKLAEQFQKK 464
           PD +  ++L+ A ++ K+
Sbjct: 674 PDRKARAMLRSALKYMKQ 691



 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 101/508 (19%), Positives = 189/508 (37%), Gaps = 110/508 (21%)

Query: 45  ALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQGEKL---FCCIPKDYQNELLYNNL 101
           A  V+ W+ +        L +SY L ++I  H + + EKL   F    +   + L YN L
Sbjct: 137 AYAVVSWLQKHN------LCFSYELLYSILIHALGRSEKLYEAFLLSQQQALSPLTYNAL 190

Query: 102 VIACLDKGVIKLSLEYMKKMRVLGHSISYLVF---------------------------- 133
           + AC     ++ ++  + +MR  G+   ++ +                            
Sbjct: 191 INACARNNDLEKAINLISRMRQDGYPSDFVNYSLIIQSLVRSNRIDSPILQKLYSEIQCD 250

Query: 134 ---------NRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGL 184
                    N +I+  +  G        L  ++A  ++P  +T   ++    +   I   
Sbjct: 251 KLELDVQLSNDIIVGFAKAGDPNKAMEFLGMVQASGLSPRTATLIAVISALGDSGRIIEA 310

Query: 185 MKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIIL 244
             ++ +MK + ++P   +Y  L   +  A +   AE  V  +E+S    +  T  +LI  
Sbjct: 311 EAIFEEMKDNGLKPKTRAYNGLLKGYVKAGMLKDAEFIVSEMERSGVSPDECTYSLLIDA 370

Query: 245 YGYLAKGKDLERIWATVQELPNVRSKSYVLA----------------------------- 275
           Y    + +   RI     E  N+   SYV +                             
Sbjct: 371 YSNAGRWES-ARIVLKEMEANNIMPNSYVFSRILASYRDRGEWQKSFQVLKEMKNSGVRP 429

Query: 276 --------IEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLL 327
                   I+ FG+ + +  A + + +M S      T  +N++I  +CK    ++A  L 
Sbjct: 430 DRHFYNVMIDTFGKFSCLDHAMDTFDKMLSEGIQPDTVTWNTLIDCHCKAELHERAEELF 489

Query: 328 KEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSI 387
           +EM   G  P   T+ ++ +  F      +  K L   M+ +         P + T  ++
Sbjct: 490 EEMMEKGFSPCVTTF-NIMINSFGEQERWDDVKTLMGNMRSLGL------LPNVVTYTTL 542

Query: 388 IEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKIND-------------- 433
           I+I+ + G   +A    E++K A     + +YN LI AY +  +++              
Sbjct: 543 IDIYGKSGRFSDAIECLEDMKSAGLKPSSTMYNALINAYAQKGLSEQAVNAFRLMRADSL 602

Query: 434 -PNLLRRMIL----GGARPDAETYSLLK 456
            P+LL    L    G  R DAE +S+LK
Sbjct: 603 KPSLLALNSLINAFGEDRRDAEAFSVLK 630


>gi|297830178|ref|XP_002882971.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297328811|gb|EFH59230.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 642

 Score = 79.3 bits (194), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 88/401 (21%), Positives = 171/401 (42%), Gaps = 20/401 (4%)

Query: 33  INRLRKLQLNKRALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQGEKLF------C 86
           I+   KL  N  A+ + +  +++   +P E  Y+ LL    K   + +   LF       
Sbjct: 240 ISSYEKLGRNDSAIRLFDE-MKDNCMQPTEKIYTTLLGIYFKVGKVEKALDLFEEMKRAG 298

Query: 87  CIPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRR 146
           C P  Y     Y  L+      G ++ + +  K M   G +   +  N L+ +    GR 
Sbjct: 299 CSPTVYT----YTELIKGLGKAGRVEEAYDLYKNMLTDGLTPDVVFLNNLMNILGKVGRL 354

Query: 147 KTIPNILRQMKADKVAPHVSTFHILMK-IEANDHNIEGLMKVYSDMKRSEVEPNEVSYCI 205
           + + N+  +M   +  P V +++ ++K +  +   +  +   +  MK   V P+E +Y I
Sbjct: 355 EELTNVFNEMGTWRCTPTVVSYNTVIKALFESKAPVSEVSSWFDKMKADGVSPSEFTYSI 414

Query: 206 LATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQE-L 264
           L   +        A   +E +++       +    LI   G   + +    ++  ++E  
Sbjct: 415 LIDGYCKTNRVEKALLLLEEMDEKGFPPCPAAYCSLINALGKAKRYEAANELFKELKENF 474

Query: 265 PNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKAS 324
            NV S+ Y + I+ FG+  ++S A +L+ EM++         YN+++S   K G +++A+
Sbjct: 475 GNVSSRVYAVMIKHFGKCGKLSEAVDLFNEMKNQGSGPDVYAYNALMSGMVKAGMVNEAN 534

Query: 325 GLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETT 384
            LL++M  NGC  + I   ++ L  F    V    +A+E    +  T K     P   T 
Sbjct: 535 SLLRKMEENGCTAD-INSHNIILNGFARTGVPR--RAIE----MFETMKHCGIKPDGVTY 587

Query: 385 LSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKA 425
            +++  FA  G    A  L  E+K   +      Y++++ A
Sbjct: 588 NTLLGCFAHAGMFEEAARLMREMKDKGFEYDAITYSSILDA 628



 Score = 67.4 bits (163), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 93/372 (25%), Positives = 156/372 (41%), Gaps = 30/372 (8%)

Query: 98  YNNLVIACLDKGVIKLSLEYMKKMRVLGHSI-SYLVFNRLIILNSSPGRRKTIPNILRQM 156
           YN++++  + +G  +   E   +M   G      + ++ LI      GR  +   +  +M
Sbjct: 200 YNSVILMLMQEGQHEKVHEVYTEMCNEGDCFPDTITYSALISSYEKLGRNDSAIRLFDEM 259

Query: 157 KADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLY 216
           K + + P    +  L+ I      +E  + ++ +MKR+   P   +Y  L     + +  
Sbjct: 260 KDNCMQPTEKIYTTLLGIYFKVGKVEKALDLFEEMKRAGCSPTVYTYTELI--KGLGKAG 317

Query: 217 TVAETYVEALEKSMTGNNWSTLDVLII--LYGYLAKGKDLERIWATVQELPNVRSK---- 270
            V E Y   L K+M  +   T DV+ +  L   L K   LE +     E+   R      
Sbjct: 318 RVEEAY--DLYKNMLTDGL-TPDVVFLNNLMNILGKVGRLEELTNVFNEMGTWRCTPTVV 374

Query: 271 SYVLAIEA-FGRIAQVSRAEELWLEMQSVKQLKATE-QYNSVISVYCKNGFIDKASGLLK 328
           SY   I+A F   A VS     W +      +  +E  Y+ +I  YCK   ++KA  LL+
Sbjct: 375 SYNTVIKALFESKAPVSEVSS-WFDKMKADGVSPSEFTYSILIDGYCKTNRVEKALLLLE 433

Query: 329 EMSMNGCKPNAITYRHL--ALGCFKS-NLVEEGFKALELGMKLITTKKVRSSTPWLETTL 385
           EM   G  P    Y  L  ALG  K      E FK L+     ++++             
Sbjct: 434 EMDEKGFPPCPAAYCSLINALGKAKRYEAANELFKELKENFGNVSSR----------VYA 483

Query: 386 SIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAK-INDPN-LLRRMILG 443
            +I+ F + G +  A +LF E+K        + YN L+   VKA  +N+ N LLR+M   
Sbjct: 484 VMIKHFGKCGKLSEAVDLFNEMKNQGSGPDVYAYNALMSGMVKAGMVNEANSLLRKMEEN 543

Query: 444 GARPDAETYSLL 455
           G   D  +++++
Sbjct: 544 GCTADINSHNII 555



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 48/176 (27%), Positives = 81/176 (46%), Gaps = 10/176 (5%)

Query: 276 IEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNG- 334
           ++A GR   VS+A  ++ + +  K    +  YNSVI +  + G  +K   +  EM   G 
Sbjct: 169 VKALGRAKMVSKALSVFYQAKGRKCKPTSSTYNSVILMLMQEGQHEKVHEVYTEMCNEGD 228

Query: 335 CKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEK 394
           C P+ ITY  L           E     +  ++L    K     P  +   +++ I+ + 
Sbjct: 229 CFPDTITYSALISS-------YEKLGRNDSAIRLFDEMKDNCMQPTEKIYTTLLGIYFKV 281

Query: 395 GDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKA-KINDP-NLLRRMILGGARPD 448
           G V  A +LFEE+K+A  +   + Y  LIK   KA ++ +  +L + M+  G  PD
Sbjct: 282 GKVEKALDLFEEMKRAGCSPTVYTYTELIKGLGKAGRVEEAYDLYKNMLTDGLTPD 337



 Score = 48.1 bits (113), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 70/317 (22%), Positives = 132/317 (41%), Gaps = 30/317 (9%)

Query: 127 SISYLVFNRLIILNSSPGRRKTIP---NILRQMKADKVAPHVSTFH--ILMKIEANDHNI 181
           S+  +V + L+    + GR K +    ++  Q K  K  P  ST++  ILM ++   H  
Sbjct: 159 SVGPVVLSELV---KALGRAKMVSKALSVFYQAKGRKCKPTSSTYNSVILMLMQEGQH-- 213

Query: 182 EGLMKVYSDM-KRSEVEPNEVSYCILATAH-AVARLYTVAETYVEALEKSM--TGNNWST 237
           E + +VY++M    +  P+ ++Y  L +++  + R  +    + E  +  M  T   ++T
Sbjct: 214 EKVHEVYTEMCNEGDCFPDTITYSALISSYEKLGRNDSAIRLFDEMKDNCMQPTEKIYTT 273

Query: 238 LDVLIILYGYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQS 297
           L  +    G + K  DL          P V   +Y   I+  G+  +V  A +L+  M +
Sbjct: 274 LLGIYFKVGKVEKALDLFEEMKRAGCSPTVY--TYTELIKGLGKAGRVEEAYDLYKNMLT 331

Query: 298 VKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNL--- 354
                     N+++++  K G +++ + +  EM    C P  ++Y  +    F+S     
Sbjct: 332 DGLTPDVVFLNNLMNILGKVGRLEELTNVFNEMGTWRCTPTVVSYNTVIKALFESKAPVS 391

Query: 355 -VEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYT 413
            V   F  +          K    +P   T   +I+ + +   V  A  L EE+ +  + 
Sbjct: 392 EVSSWFDKM----------KADGVSPSEFTYSILIDGYCKTNRVEKALLLLEEMDEKGFP 441

Query: 414 KYTFVYNTLIKAYVKAK 430
                Y +LI A  KAK
Sbjct: 442 PCPAAYCSLINALGKAK 458


>gi|225459022|ref|XP_002285611.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09900-like isoform 1 [Vitis vinifera]
          Length = 610

 Score = 79.3 bits (194), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 95/451 (21%), Positives = 186/451 (41%), Gaps = 38/451 (8%)

Query: 24  VHRGEI------FHSINRLRKLQLNKRALEVMEWVIRERPYRPKELDYSYLLEFTIKNHG 77
           V+RG+I         I    ++   K+A  VME ++ +    P  + Y+ L+    K+  
Sbjct: 141 VYRGDIPDIIPCTSLIRGFCRIGKTKKATWVME-ILEQSGAVPDVITYNVLISGYCKSGE 199

Query: 78  ISQGEKLFCCIPKDYQNE----LLYNNLVIACLDKGVIKLSLEYMKKM---RVLGHSISY 130
           I    ++      D  N     + YN ++    D G +K ++E + +          I+Y
Sbjct: 200 IDNALQVL-----DRMNVAPDVVTYNTILRTLCDSGKLKQAMEVLDRQLQKECYPDVITY 254

Query: 131 LVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSD 190
            +        S  G+      +L +M+     P V T+++L+     +  ++  +K  ++
Sbjct: 255 TILIEATCKESGVGQAM---KLLDEMRNKGSKPDVVTYNVLINGICKEGRLDEAIKFLNN 311

Query: 191 MKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAK 250
           M     +PN +++ I+  +      +  AE  +  + +     +  T ++LI    +L +
Sbjct: 312 MPSYGCQPNVITHNIILRSMCSTGRWMDAEKLLSDMLRKGCSPSVVTFNILI---NFLCR 368

Query: 251 GKDLERIWATVQELP----NVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQ 306
              L R    ++++P       S SY   +  F +  ++ RA E    M S         
Sbjct: 369 QGLLGRAIDILEKMPMHGCTPNSLSYNPLLHGFCKEKKMDRAIEYLDIMVSRGCYPDIVT 428

Query: 307 YNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGM 366
           YN++++  CK+G +D A  +L ++S  GC P  ITY  +  G  K    E         +
Sbjct: 429 YNTLLTALCKDGKVDVAVEILNQLSSKGCSPVLITYNTVIDGLSKVGKTER-------AI 481

Query: 367 KLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAY 426
           KL+   + +   P + T  S++   + +G V  A   F +L+          YN+++   
Sbjct: 482 KLLDEMRRKGLKPDIITYSSLVSGLSREGKVDEAIKFFHDLEGLGIRPNAITYNSIMLGL 541

Query: 427 VKAKINDP--NLLRRMILGGARPDAETYSLL 455
            K++  D   + L  MI    +P   TY++L
Sbjct: 542 CKSRQTDRAIDFLAYMISKRCKPTEATYTIL 572



 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 74/321 (23%), Positives = 128/321 (39%), Gaps = 54/321 (16%)

Query: 144 GRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSY 203
           G+ K    ++  ++     P V T+++L+        I+  ++V   + R  V P+ V+Y
Sbjct: 163 GKTKKATWVMEILEQSGAVPDVITYNVLISGYCKSGEIDNALQV---LDRMNVAPDVVTY 219

Query: 204 -CILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQ 262
             IL T     +L    E     L+K                                 +
Sbjct: 220 NTILRTLCDSGKLKQAMEVLDRQLQK---------------------------------E 246

Query: 263 ELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDK 322
             P+V   +Y + IEA  + + V +A +L  EM++         YN +I+  CK G +D+
Sbjct: 247 CYPDV--ITYTILIEATCKESGVGQAMKLLDEMRNKGSKPDVVTYNVLINGICKEGRLDE 304

Query: 323 ASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGM---KLITTKKVRSSTP 379
           A   L  M   GC+PN IT+          N++     +    M   KL++    +  +P
Sbjct: 305 AIKFLNNMPSYGCQPNVITH----------NIILRSMCSTGRWMDAEKLLSDMLRKGCSP 354

Query: 380 WLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKINDPNL--L 437
            + T   +I     +G +G A ++ E++     T  +  YN L+  + K K  D  +  L
Sbjct: 355 SVVTFNILINFLCRQGLLGRAIDILEKMPMHGCTPNSLSYNPLLHGFCKEKKMDRAIEYL 414

Query: 438 RRMILGGARPDAETYSLLKLA 458
             M+  G  PD  TY+ L  A
Sbjct: 415 DIMVSRGCYPDIVTYNTLLTA 435



 Score = 56.2 bits (134), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 84/378 (22%), Positives = 151/378 (39%), Gaps = 50/378 (13%)

Query: 43  KRALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQGEKLFCCIPKDYQNE------L 96
           K+A+EV++  +++  Y P  + Y+ L+E T K  G+ Q  KL      + +N+      +
Sbjct: 233 KQAMEVLDRQLQKECY-PDVITYTILIEATCKESGVGQAMKLL----DEMRNKGSKPDVV 287

Query: 97  LYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQM 156
            YN L+     +G +  +++++  M   G   + +  N ++    S GR      +L  M
Sbjct: 288 TYNVLINGICKEGRLDEAIKFLNNMPSYGCQPNVITHNIILRSMCSTGRWMDAEKLLSDM 347

Query: 157 KADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLY 216
                +P V TF+IL+        +   + +   M      PN +SY  L       +  
Sbjct: 348 LRKGCSPSVVTFNILINFLCRQGLLGRAIDILEKMPMHGCTPNSLSYNPLLHGFCKEKKM 407

Query: 217 TVAETYVEALEKS------MTGNNWST-------LDVLI-ILYGYLAKG----------- 251
             A  Y++ +         +T N   T       +DV + IL    +KG           
Sbjct: 408 DRAIEYLDIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQLSSKGCSPVLITYNTV 467

Query: 252 -KDLERIWAT---VQELPNVRSK-------SYVLAIEAFGRIAQVSRAEELWLEMQSVKQ 300
              L ++  T   ++ L  +R K       +Y   +    R  +V  A + + +++ +  
Sbjct: 468 IDGLSKVGKTERAIKLLDEMRRKGLKPDIITYSSLVSGLSREGKVDEAIKFFHDLEGLGI 527

Query: 301 LKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFK 360
                 YNS++   CK+   D+A   L  M    CKP   TY  L  G     L +E   
Sbjct: 528 RPNAITYNSIMLGLCKSRQTDRAIDFLAYMISKRCKPTEATYTILIEGIAYEGLAKE--- 584

Query: 361 ALELGMKLITTKKVRSST 378
           AL+L  +L +   V+ S+
Sbjct: 585 ALDLLNELCSRGLVKKSS 602


>gi|449479180|ref|XP_004155527.1| PREDICTED: pentatricopeptide repeat-containing protein At1g03560,
           mitochondrial-like [Cucumis sativus]
          Length = 653

 Score = 79.3 bits (194), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 73/311 (23%), Positives = 138/311 (44%), Gaps = 18/311 (5%)

Query: 152 ILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHA 211
           + R+MK + + P + T++ L+    N   IE   KV+  M   ++ P+ V+Y I+   + 
Sbjct: 207 VWRRMKENGIDPSLYTYNFLVNGLVNSMFIESAEKVFEVMDGGKIVPDTVTYNIMIKGYC 266

Query: 212 VA-RLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPN---- 266
            A +L    E + +   K++  +  + + ++   Y      +D +   +   E+      
Sbjct: 267 KAGKLQKAMEKFRDMEMKNVKPDKITYMTLIQACYSE----RDFDTCLSLYLEMEERGLE 322

Query: 267 VRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGL 326
           +   SY L I    +  +   A  ++  M           Y ++I  Y KNG +++A  L
Sbjct: 323 IPPHSYSLVIGGLCKQRKCMEAYAVFETMNQKGCRANVAIYTALIDSYSKNGSMEEAMRL 382

Query: 327 LKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLS 386
            + M   G +P+A+TY  L  G  KS  +++G +  +        K V  +  +     S
Sbjct: 383 FERMKNEGFEPDAVTYSVLVNGLCKSGRLDDGMELFD----FCRNKGVAINAMFYA---S 435

Query: 387 IIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVK-AKINDP-NLLRRMILGG 444
           +I+   + G + +AENLFEE+ +    + ++ YN +I A  K  KI+    L  RM   G
Sbjct: 436 LIDGLGKAGRIEDAENLFEEMSEKGCARDSYCYNAIIDALAKHGKIDQALALFGRMEEEG 495

Query: 445 ARPDAETYSLL 455
                 T+++L
Sbjct: 496 CDQTVYTFTIL 506



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 63/278 (22%), Positives = 109/278 (39%), Gaps = 46/278 (16%)

Query: 152 ILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHA 211
           +   M       +V+ +  L+   + + ++E  M+++  MK    EP+ V+Y +L     
Sbjct: 347 VFETMNQKGCRANVAIYTALIDSYSKNGSMEEAMRLFERMKNEGFEPDAVTYSVL----- 401

Query: 212 VARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLA-KGKDLERIWATVQELPNVRSK 270
                      V  L KS        LD  + L+ +   KG  +  ++            
Sbjct: 402 -----------VNGLCKS------GRLDDGMELFDFCRNKGVAINAMF------------ 432

Query: 271 SYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEM 330
            Y   I+  G+  ++  AE L+ EM      + +  YN++I    K+G ID+A  L   M
Sbjct: 433 -YASLIDGLGKAGRIEDAENLFEEMSEKGCARDSYCYNAIIDALAKHGKIDQALALFGRM 491

Query: 331 SMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEI 390
              GC     T+  L  G FK +  EE  K  +   K+I     +  TP + +  ++   
Sbjct: 492 EEEGCDQTVYTFTILIDGLFKEHKNEEAIKFWD---KMID----KGITPTVASFRALAIG 544

Query: 391 FAEKGDVGNAENLFEELKKANY---TKYTFVYNTLIKA 425
               G V  A  + ++L        T +  + NTL KA
Sbjct: 545 LCLCGKVARACKILDDLAPMGIIPETAFEDMINTLCKA 582



 Score = 52.4 bits (124), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 58/225 (25%), Positives = 94/225 (41%), Gaps = 14/225 (6%)

Query: 236 STLDVLIILYGYLAKGKDLERIWATVQE---LPNVRSKSYVLAIEAFGRIAQVSRAEELW 292
           S  + LI  +G L   ++L  +W  ++E    P++ +  Y   +        +  AE+++
Sbjct: 186 SAANSLIKSFGNLGLVEELLWVWRRMKENGIDPSLYT--YNFLVNGLVNSMFIESAEKVF 243

Query: 293 LEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKS 352
             M   K +  T  YN +I  YCK G + KA    ++M M   KP+ ITY  L   C+  
Sbjct: 244 EVMDGGKIVPDTVTYNIMIKGYCKAGKLQKAMEKFRDMEMKNVKPDKITYMTLIQACYS- 302

Query: 353 NLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANY 412
              E  F    L + L   ++     P   +   +I    ++     A  +FE + +   
Sbjct: 303 ---ERDFDTC-LSLYLEMEERGLEIPP--HSYSLVIGGLCKQRKCMEAYAVFETMNQKGC 356

Query: 413 TKYTFVYNTLIKAYVKAKINDP--NLLRRMILGGARPDAETYSLL 455
                +Y  LI +Y K    +    L  RM   G  PDA TYS+L
Sbjct: 357 RANVAIYTALIDSYSKNGSMEEAMRLFERMKNEGFEPDAVTYSVL 401


>gi|414868428|tpg|DAA46985.1| TPA: hypothetical protein ZEAMMB73_842284 [Zea mays]
          Length = 683

 Score = 79.3 bits (194), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 96/450 (21%), Positives = 184/450 (40%), Gaps = 44/450 (9%)

Query: 15  QSWMREGFPVHRGEIFHSINRLRKLQLNKRALEVMEWVIRERPYRPKELDYSYLLEFTIK 74
           +SW R G   +  E+F  + RL                      RP    Y+ ++  +++
Sbjct: 153 ESWGRLGLAHYAHEVFVQVPRL--------------------GLRPSTAIYNAVIAASVR 192

Query: 75  NHGISQGEKLFCCIPKD--YQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLV 132
              +      F  +P D    +   YN LV     +G++  +L  +K+M   G   + + 
Sbjct: 193 AGAVDAAYLRFQQMPADGCRPDCFTYNTLVHGVCRRGIVDEALRLVKQMERAGIRPNVVT 252

Query: 133 FNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMK 192
           +  L+    +  R +    +L +MK   V+   +T+  L+         E   ++ S+  
Sbjct: 253 YTMLVDGFCNASRVEEAVCVLERMKEKGVSATEATYRSLVHGAFRCLEKERAYRMLSEWI 312

Query: 193 RSEVEPNEVSYCILATAHAVARLYTVAETYVEALE--KSMTGNNW----STLDVLIILYG 246
            S+   + ++Y      H +    +  +   EA+E  K M+   +    +T  ++I    
Sbjct: 313 ESDPTLHSIAY------HTLLYCLSKNDMDKEAVELAKKMSKRGYLLGSTTFSIVIPCAV 366

Query: 247 YLAKGKDL-ERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATE 305
            + +  DL E +   +++  N+    Y++ I++F R   +S+A + + +M S   L + E
Sbjct: 367 KVLESSDLCELVDDFIKKGGNLGFDMYIMIIKSFLRCKDISKANKYFSQMVSDGLLSSVE 426

Query: 306 QYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELG 365
            YN VI  + K G +++A   +K M  +G  PN +T+  L  G  K   V +    L++ 
Sbjct: 427 SYNIVIDCFAKAGEVERALETIKVMQESGFSPNLVTFNTLINGYLKLGNVHDAKAFLKMV 486

Query: 366 MKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKA 425
           M+           P + T  S+I+       + +A N F E+ +         YN LI  
Sbjct: 487 ME-------HGLMPDVITFTSLIDGLCHTHQLDDAFNCFSEMSEWGVRPNVQTYNVLIHG 539

Query: 426 YVKAK--INDPNLLRRMILGGARPDAETYS 453
              A        LL +M + G  PDA +++
Sbjct: 540 LCSAGHVSKAIELLNKMKMDGITPDAYSFN 569



 Score = 57.4 bits (137), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 33/154 (21%), Positives = 71/154 (46%), Gaps = 7/154 (4%)

Query: 276 IEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGC 335
           +E++GR+     A E+++++  +    +T  YN+VI+   + G +D A    ++M  +GC
Sbjct: 152 VESWGRLGLAHYAHEVFVQVPRLGLRPSTAIYNAVIAASVRAGAVDAAYLRFQQMPADGC 211

Query: 336 KPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKG 395
           +P+  TY  L  G  +  +V+E        ++L+   +     P + T   +++ F    
Sbjct: 212 RPDCFTYNTLVHGVCRRGIVDE-------ALRLVKQMERAGIRPNVVTYTMLVDGFCNAS 264

Query: 396 DVGNAENLFEELKKANYTKYTFVYNTLIKAYVKA 429
            V  A  + E +K+   +     Y +L+    + 
Sbjct: 265 RVEEAVCVLERMKEKGVSATEATYRSLVHGAFRC 298



 Score = 49.3 bits (116), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 67/292 (22%), Positives = 122/292 (41%), Gaps = 21/292 (7%)

Query: 100 NLVIACLDK-----GVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNI-- 152
           ++VI C  K      + +L  +++KK   LG       F+  I++  S  R K I     
Sbjct: 359 SIVIPCAVKVLESSDLCELVDDFIKKGGNLG-------FDMYIMIIKSFLRCKDISKANK 411

Query: 153 -LRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHA 211
              QM +D +   V +++I++   A    +E  ++    M+ S   PN V++  L   + 
Sbjct: 412 YFSQMVSDGLLSSVESYNIVIDCFAKAGEVERALETIKVMQESGFSPNLVTFNTLINGYL 471

Query: 212 VARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQEL---PNVR 268
                  A+ +++ + +     +  T   LI    +  +  D    ++ + E    PNV 
Sbjct: 472 KLGNVHDAKAFLKMVMEHGLMPDVITFTSLIDGLCHTHQLDDAFNCFSEMSEWGVRPNV- 530

Query: 269 SKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLK 328
            ++Y + I        VS+A EL  +M+          +N+ I  +C+   I+KA  L  
Sbjct: 531 -QTYNVLIHGLCSAGHVSKAIELLNKMKMDGITPDAYSFNAPILSFCRMRKIEKAQKLFN 589

Query: 329 EMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPW 380
           +MS  G  P++ TY  L         V+E  K + L M+ I+    +  T W
Sbjct: 590 DMSRYGVSPDSYTYNALIKALCDERRVDEA-KEIILAMESISCIGTKQHTYW 640


>gi|224064580|ref|XP_002301519.1| predicted protein [Populus trichocarpa]
 gi|222843245|gb|EEE80792.1| predicted protein [Populus trichocarpa]
          Length = 718

 Score = 79.3 bits (194), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 90/411 (21%), Positives = 183/411 (44%), Gaps = 41/411 (9%)

Query: 64  DYSYLLEFTIKNHGISQGEKLFCCI--------PKDYQNELLYNNLVIACLDK-GVIKLS 114
           DY +LL   + N G    +K  CC          K+ Q +L   + +I+ L + G ++++
Sbjct: 42  DYVFLLR-ELGNRG--DCKKAICCFEFAVKRERKKNEQGKLA--SAMISTLGRLGKVEMA 96

Query: 115 LEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKI 174
               K     G+  +   F+ +I      G       I   MK   + P++ T++ ++  
Sbjct: 97  KTVFKAALTEGYGNTVYAFSAIISAYGRSGYCNEAIKIFYSMKDYGLKPNLVTYNAVIDA 156

Query: 175 EANDH-NIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGN 233
                   + +++++ +M R+ ++P+ +++  L    +   L+  A +    +       
Sbjct: 157 CGKGGVEFKRVLEIFDEMLRNGMQPDRITFNSLLAVCSKGGLWEAARSLSCEMVNRGIDQ 216

Query: 234 NWSTLDVLIILYGYLAKGKDLERIWATVQE------LPNVRSKSYVLAIEAFGRIAQVSR 287
           +  T + L+     + KG  L+  +  + E      LPNV   +Y   I+ + +  ++  
Sbjct: 217 DIFTYNTLL---DAVCKGGQLDMAFEIMSEMPAKNILPNV--VTYSTMIDGYAKAGRLDD 271

Query: 288 AEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLAL 347
           A  L+ EM+ +        YN+++S+Y K G  ++A  + +EM  +G + + +TY  L  
Sbjct: 272 ARNLFNEMKFLGISLDRVSYNTLLSIYAKLGRFEEAMDVCREMENSGIRKDVVTYNALLG 331

Query: 348 GC---FKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLF 404
           G    +K ++V + F+ +          K R  +P L T  ++I+++++ G    A ++F
Sbjct: 332 GYGKQYKYDVVRKVFEEM----------KARHVSPNLLTYSTLIDVYSKGGLYREAMDVF 381

Query: 405 EELKKANYTKYTFVYNTLIKAYVKAKINDP--NLLRRMILGGARPDAETYS 453
            E KKA       +Y+ LI A  K  + +   +LL  M   G RP+  TY+
Sbjct: 382 REFKKAGLKADVVLYSALIDALCKNGLVESAVSLLDEMTKEGIRPNVVTYN 432



 Score = 67.4 bits (163), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 65/310 (20%), Positives = 135/310 (43%), Gaps = 12/310 (3%)

Query: 94  NELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNIL 153
           + + +N+L+  C   G+ + +     +M   G       +N L+      G+      I+
Sbjct: 182 DRITFNSLLAVCSKGGLWEAARSLSCEMVNRGIDQDIFTYNTLLDAVCKGGQLDMAFEIM 241

Query: 154 RQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVA 213
            +M A  + P+V T+  ++   A    ++    ++++MK   +  + VSY  L + +A  
Sbjct: 242 SEMPAKNILPNVVTYSTMIDGYAKAGRLDDARNLFNEMKFLGISLDRVSYNTLLSIYAKL 301

Query: 214 RLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQEL---PNVRSK 270
             +  A      +E S    +  T + L+  YG   K   + +++  ++     PN+   
Sbjct: 302 GRFEEAMDVCREMENSGIRKDVVTYNALLGGYGKQYKYDVVRKVFEEMKARHVSPNLL-- 359

Query: 271 SYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEM 330
           +Y   I+ + +      A +++ E +          Y+++I   CKNG ++ A  LL EM
Sbjct: 360 TYSTLIDVYSKGGLYREAMDVFREFKKAGLKADVVLYSALIDALCKNGLVESAVSLLDEM 419

Query: 331 SMNGCKPNAITYRHL--ALG--CFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLS 386
           +  G +PN +TY  +  A G      ++V++  +  EL +  +++  V  +T  L     
Sbjct: 420 TKEGIRPNVVTYNSIIDAFGRPATTESVVDDAGQTSELQIDSLSSSAVEKATKSLVADRE 479

Query: 387 ---IIEIFAE 393
              II+IF +
Sbjct: 480 DNRIIKIFGQ 489



 Score = 56.6 bits (135), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 72/338 (21%), Positives = 137/338 (40%), Gaps = 48/338 (14%)

Query: 65  YSYLLEFTIKNHGISQGEKLFCCIPKD--YQNELLYNNLVIACLDKGVIKLSLEYMKKMR 122
           Y+ LL+   K   +    ++   +P      N + Y+ ++      G +  +     +M+
Sbjct: 221 YNTLLDAVCKGGQLDMAFEIMSEMPAKNILPNVVTYSTMIDGYAKAGRLDDARNLFNEMK 280

Query: 123 VLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIE 182
            LG S+  + +N L+ + +  GR +   ++ R+M+   +   V T++ L+      +  +
Sbjct: 281 FLGISLDRVSYNTLLSIYAKLGRFEEAMDVCREMENSGIRKDVVTYNALLGGYGKQYKYD 340

Query: 183 GLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLI 242
            + KV+ +MK   V PN ++Y  L   ++   LY  A       +K       + L   +
Sbjct: 341 VVRKVFEEMKARHVSPNLLTYSTLIDVYSKGGLYREAMDVFREFKK-------AGLKADV 393

Query: 243 ILYG----YLAKGKDLERIWATVQEL------PNVRSKSYVLAIEAFGR-------IAQV 285
           +LY      L K   +E   + + E+      PNV   +Y   I+AFGR       +   
Sbjct: 394 VLYSALIDALCKNGLVESAVSLLDEMTKEGIRPNV--VTYNSIIDAFGRPATTESVVDDA 451

Query: 286 SRAEELWLEM-------QSVKQLKATEQYNSVISVY----CKNGFIDKASGLLKEMSMNG 334
            +  EL ++        ++ K L A  + N +I ++     +     K SG  + M + G
Sbjct: 452 GQTSELQIDSLSSSAVEKATKSLVADREDNRIIKIFGQLAAEKAGQAKNSGGQEMMCILG 511

Query: 335 C---------KPNAITYRHLALGCFKSNLVEEGFKALE 363
                     KPN +T+  +   C + N  EE    LE
Sbjct: 512 VFHKMHELEIKPNVVTFSAILNACSRCNSFEEASMLLE 549



 Score = 55.1 bits (131), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 66/271 (24%), Positives = 116/271 (42%), Gaps = 17/271 (6%)

Query: 193 RSEVEPNEVSYCILATAHAVARLYTV--AETYVEALEKSMTGNNWSTLDVLIILYGYLAK 250
           + E + NE      A    + RL  V  A+T  +A      GN       +I  YG    
Sbjct: 68  KRERKKNEQGKLASAMISTLGRLGKVEMAKTVFKAALTEGYGNTVYAFSAIISAYGRSGY 127

Query: 251 GKDLERIWATVQEL---PNVRSKSYVLAIEAFGRIA-QVSRAEELWLEMQSVKQLKATEQ 306
             +  +I+ ++++    PN+   +Y   I+A G+   +  R  E++ EM           
Sbjct: 128 CNEAIKIFYSMKDYGLKPNL--VTYNAVIDACGKGGVEFKRVLEIFDEMLRNGMQPDRIT 185

Query: 307 YNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGM 366
           +NS+++V  K G  + A  L  EM   G   +  TY  L     K          L++  
Sbjct: 186 FNSLLAVCSKGGLWEAARSLSCEMVNRGIDQDIFTYNTLLDAVCKGG-------QLDMAF 238

Query: 367 KLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAY 426
           ++++    ++  P + T  ++I+ +A+ G + +A NLF E+K    +     YNTL+  Y
Sbjct: 239 EIMSEMPAKNILPNVVTYSTMIDGYAKAGRLDDARNLFNEMKFLGISLDRVSYNTLLSIY 298

Query: 427 VK-AKINDP-NLLRRMILGGARPDAETYSLL 455
            K  +  +  ++ R M   G R D  TY+ L
Sbjct: 299 AKLGRFEEAMDVCREMENSGIRKDVVTYNAL 329


>gi|242065464|ref|XP_002454021.1| hypothetical protein SORBIDRAFT_04g023230 [Sorghum bicolor]
 gi|241933852|gb|EES06997.1| hypothetical protein SORBIDRAFT_04g023230 [Sorghum bicolor]
          Length = 729

 Score = 79.3 bits (194), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 79/400 (19%), Positives = 165/400 (41%), Gaps = 45/400 (11%)

Query: 94  NELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNIL 153
           +   +N L+ A   +G +  +L     M   G S S + ++ L+         +    +L
Sbjct: 161 DTFTFNPLIRALCVRGRVPDALAVFDDMLHRGCSPSVVTYSILLDATCKASGYRQAMVLL 220

Query: 154 RQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYC-ILATAHAV 212
            +M+A    P + T+++L+    N+ +++  + + SD+     +P+ V+Y  +L +    
Sbjct: 221 DEMRAKGCEPDIVTYNVLINAMCNEGDVDEALNILSDLPSHGCKPDAVTYTPVLKSLCGS 280

Query: 213 ARLYTVAETYVEA-------------------LEKSMTGNNWSTLDVL--------IILY 245
            R   V E + E                     ++ +       +D +        I+ Y
Sbjct: 281 ERWKEVEELFAEMASNKCAPDEVTFNTIVTSLCQQGLVDRAIKVVDHMSEHGCIPDIVTY 340

Query: 246 GYLAKG-KDLERIWATVQELPNVRSK-------SYVLAIEAFGRIAQVSRAEELWLEMQS 297
             +  G  D+ R+   V+ L  ++S        +Y   ++    I Q   AEEL  EM  
Sbjct: 341 SSILDGLCDVGRVDDAVELLSRLKSYGCKPDTIAYTTVLKGLCSIEQWEHAEELMAEMVC 400

Query: 298 VKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEE 357
                    +N+VI+  C+ G +D+A  ++++MS NGC P+ +TY  +  G     L  E
Sbjct: 401 SDCPPDEVTFNTVIASLCQKGLVDRAIKVVEQMSENGCNPDIVTYNSIIDG-----LCNE 455

Query: 358 GFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTF 417
             + ++  M+L++  +     P + T  ++++         +AE L   +  ++      
Sbjct: 456 --RCIDDAMELLSNLQSYGCKPDIVTFNTLLKGLCSVDRWEDAEQLMVNMMHSDCPPDAT 513

Query: 418 VYNTLIKAYVKAK--INDPNLLRRMILGGARPDAETYSLL 455
            +NT+I +  +    +     L+ M   G  P+  TY+++
Sbjct: 514 TFNTVITSLCQKGLLLQAIETLKIMAENGCIPNQSTYNIV 553



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 80/367 (21%), Positives = 144/367 (39%), Gaps = 40/367 (10%)

Query: 123 VLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIE 182
            LG S + + +N ++      GR   I +  R +      P   TF+ L++       + 
Sbjct: 123 TLGASATVVTYNTMVNGYCRAGR---IEDARRLISGMPFPPDTFTFNPLIRALCVRGRVP 179

Query: 183 GLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLI 242
             + V+ DM      P+ V+Y IL  A   A  Y  A   ++ +       +  T +VLI
Sbjct: 180 DALAVFDDMLHRGCSPSVVTYSILLDATCKASGYRQAMVLLDEMRAKGCEPDIVTYNVLI 239

Query: 243 ILYGYLAKGKDLERIWATVQELPNVRSK----SYVLAIEAFGRIAQVSRAEELWLEMQSV 298
                +    D++     + +LP+   K    +Y   +++     +    EEL+ EM S 
Sbjct: 240 ---NAMCNEGDVDEALNILSDLPSHGCKPDAVTYTPVLKSLCGSERWKEVEELFAEMASN 296

Query: 299 KQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEG 358
           K       +N++++  C+ G +D+A  ++  MS +GC P+ +TY  +  G      V++ 
Sbjct: 297 KCAPDEVTFNTIVTSLCQQGLVDRAIKVVDHMSEHGCIPDIVTYSSILDGLCDVGRVDDA 356

Query: 359 FKAL----ELGMKLIT-----------------------TKKVRSSTPWLETTL-SIIEI 390
            + L      G K  T                        + V S  P  E T  ++I  
Sbjct: 357 VELLSRLKSYGCKPDTIAYTTVLKGLCSIEQWEHAEELMAEMVCSDCPPDEVTFNTVIAS 416

Query: 391 FAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKINDP--NLLRRMILGGARPD 448
             +KG V  A  + E++ +         YN++I      +  D    LL  +   G +PD
Sbjct: 417 LCQKGLVDRAIKVVEQMSENGCNPDIVTYNSIIDGLCNERCIDDAMELLSNLQSYGCKPD 476

Query: 449 AETYSLL 455
             T++ L
Sbjct: 477 IVTFNTL 483



 Score = 68.9 bits (167), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 92/416 (22%), Positives = 167/416 (40%), Gaps = 36/416 (8%)

Query: 59  RPKELDYSYLLEFTIKNHGISQGEKLFC------CIPKDYQNELLYNNLVIACLDKGVIK 112
           +P  + Y+ +L+    +    + E+LF       C P    +E+ +N +V +   +G++ 
Sbjct: 264 KPDAVTYTPVLKSLCGSERWKEVEELFAEMASNKCAP----DEVTFNTIVTSLCQQGLVD 319

Query: 113 LSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILM 172
            +++ +  M   G     + ++ ++      GR      +L ++K+    P    +  ++
Sbjct: 320 RAIKVVDHMSEHGCIPDIVTYSSILDGLCDVGRVDDAVELLSRLKSYGCKPDTIAYTTVL 379

Query: 173 KIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTG 232
           K   +    E   ++ ++M  S+  P+EV++  +  +     L   A   VE +  S  G
Sbjct: 380 KGLCSIEQWEHAEELMAEMVCSDCPPDEVTFNTVIASLCQKGLVDRAIKVVEQM--SENG 437

Query: 233 NNWSTLDVLIILYGYLAKGKDLERIWATVQEL-PNVRSKSYVLAIEAFGRI----AQVSR 287
            N       I+ Y  +  G   ER      EL  N++S      I  F  +      V R
Sbjct: 438 CNPD-----IVTYNSIIDGLCNERCIDDAMELLSNLQSYGCKPDIVTFNTLLKGLCSVDR 492

Query: 288 ---AEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRH 344
              AE+L + M           +N+VI+  C+ G + +A   LK M+ NGC PN  TY  
Sbjct: 493 WEDAEQLMVNMMHSDCPPDATTFNTVITSLCQKGLLLQAIETLKIMAENGCIPNQSTYNI 552

Query: 345 LALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLF 404
           +     K+   +E  K L  GM         + TP L T  ++I    + G +  A +L 
Sbjct: 553 VVDALLKAGKTQEALKLLS-GMT--------NGTPDLITYNTVISNITKAGKMEEALDLL 603

Query: 405 EELKKANYTKYTFVYNTLIKAYVKAKINDP--NLLRRMILGGARPDAETYSLLKLA 458
             +     +  T  Y +L     +    D    +L R+   G  PDA  Y+ + L 
Sbjct: 604 RVMVSNGLSPDTITYRSLAYGICREDGTDRAIRMLCRLQDMGLSPDATFYNDILLG 659



 Score = 48.1 bits (113), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 42/191 (21%), Positives = 73/191 (38%), Gaps = 15/191 (7%)

Query: 243 ILYGYLAKG---KDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVK 299
           IL   L  G    D ER++AT+     V   +Y   +  + R  ++  A  L   M    
Sbjct: 103 ILIKRLCSGGRVADAERVFATLGASATV--VTYNTMVNGYCRAGRIEDARRLISGMPFPP 160

Query: 300 QLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGF 359
               T  +N +I   C  G +  A  +  +M   GC P+ +TY  L      +     G+
Sbjct: 161 D---TFTFNPLIRALCVRGRVPDALAVFDDMLHRGCSPSVVTYSIL----LDATCKASGY 213

Query: 360 KALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVY 419
           +     M L+   + +   P + T   +I     +GDV  A N+  +L           Y
Sbjct: 214 RQ---AMVLLDEMRAKGCEPDIVTYNVLINAMCNEGDVDEALNILSDLPSHGCKPDAVTY 270

Query: 420 NTLIKAYVKAK 430
             ++K+   ++
Sbjct: 271 TPVLKSLCGSE 281



 Score = 43.9 bits (102), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 68/346 (19%), Positives = 137/346 (39%), Gaps = 56/346 (16%)

Query: 44  RALEVMEWVIRERPY--RPKELDYSYLLEFTIKNHGISQGEKLFC------CIPKDYQNE 95
           R  + +E + R + Y  +P  + Y+ +L+           E+L        C P    +E
Sbjct: 352 RVDDAVELLSRLKSYGCKPDTIAYTTVLKGLCSIEQWEHAEELMAEMVCSDCPP----DE 407

Query: 96  LLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQ 155
           + +N ++ +   KG++  +++ +++M   G +   + +N +I    +         +L  
Sbjct: 408 VTFNTVIASLCQKGLVDRAIKVVEQMSENGCNPDIVTYNSIIDGLCNERCIDDAMELLSN 467

Query: 156 MKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATA------ 209
           +++    P + TF+ L+K   +    E   ++  +M  S+  P+  ++  + T+      
Sbjct: 468 LQSYGCKPDIVTFNTLLKGLCSVDRWEDAEQLMVNMMHSDCPPDATTFNTVITSLCQKGL 527

Query: 210 --HAVARLYTVAE--------TY---VEALEKS---------MTGNNWSTLDVL------ 241
              A+  L  +AE        TY   V+AL K+         ++G    T D++      
Sbjct: 528 LLQAIETLKIMAENGCIPNQSTYNIVVDALLKAGKTQEALKLLSGMTNGTPDLITYNTVI 587

Query: 242 --IILYGYLAKGKDLERIWATVQELPNV---RSKSYVLAIEAFGRIAQVSRAEELWLEMQ 296
             I   G + +  DL R+  +    P+    RS +Y        R     RA  +   +Q
Sbjct: 588 SNITKAGKMEEALDLLRVMVSNGLSPDTITYRSLAY-----GICREDGTDRAIRMLCRLQ 642

Query: 297 SVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITY 342
            +        YN ++  +C+N   D A      M  +GC P+  TY
Sbjct: 643 DMGLSPDATFYNDILLGFCQNWRTDIAIDCFAHMVSSGCMPDESTY 688


>gi|225447872|ref|XP_002269015.1| PREDICTED: pentatricopeptide repeat-containing protein At2g15630,
           mitochondrial-like [Vitis vinifera]
          Length = 656

 Score = 79.3 bits (194), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 81/364 (22%), Positives = 149/364 (40%), Gaps = 14/364 (3%)

Query: 94  NELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNIL 153
           N + YN ++     +G I+ +   +  MRV G       +  LI      GR +    + 
Sbjct: 283 NVVSYNTIIHGYSSRGNIEGARRILDAMRVKGIEPDSYTYGSLISGMCKEGRLEEASGLF 342

Query: 154 RQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVA 213
            +M    + P+  T++ L+    N  ++E       +M +  + P+  +Y +L  A  + 
Sbjct: 343 DKMVEIGLVPNAVTYNTLIDGYCNKGDLERAFSYRDEMVKKGIMPSVSTYNLLVHALFME 402

Query: 214 RLYTVAETYVEALEKSMTGNNWSTLDVLIILY---GYLAKGKDLERIWATVQELPNVRSK 270
                A+  ++ + K     +  T ++LI  Y   G   K  DL     +    P     
Sbjct: 403 GRMGEADDMIKEMRKKGIIPDAITYNILINGYSRCGNAKKAFDLHNEMLSKGIEPT--HV 460

Query: 271 SYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEM 330
           +Y   I    R  ++  A++L+ ++           +N+++  +C NG +++A  LLKEM
Sbjct: 461 TYTSLIYVLSRRNRMKEADDLFEKILDQGVSPDVIMFNAMVDGHCANGNVERAFMLLKEM 520

Query: 331 SMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEI 390
                 P+ +T+  L  G  +   VEE          L+   K R   P   +  ++I  
Sbjct: 521 DRKSVPPDEVTFNTLMQGRCREGKVEE-------ARMLLDEMKRRGIKPDHISYNTLISG 573

Query: 391 FAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKIND--PNLLRRMILGGARPD 448
           +  +GD+ +A  + +E+    +      YN LIK   K +  D    LL+ M+  G  PD
Sbjct: 574 YGRRGDIKDAFRVRDEMLSIGFNPTLLTYNALIKCLCKNQEGDLAEELLKEMVNKGISPD 633

Query: 449 AETY 452
             TY
Sbjct: 634 DSTY 637



 Score = 62.0 bits (149), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 92/393 (23%), Positives = 170/393 (43%), Gaps = 44/393 (11%)

Query: 29  IFHSINRLRKLQLNKRALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQGEKLF--- 85
           I H  +    ++  +R L+ M    R +   P    Y  L+    K   + +   LF   
Sbjct: 290 IIHGYSSRGNIEGARRILDAM----RVKGIEPDSYTYGSLISGMCKEGRLEEASGLFDKM 345

Query: 86  ---CCIPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSS 142
                +P    N + YN L+    +KG ++ +  Y  +M   G   S   +N L+     
Sbjct: 346 VEIGLVP----NAVTYNTLIDGYCNKGDLERAFSYRDEMVKKGIMPSVSTYNLLVHALFM 401

Query: 143 PGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVS 202
            GR     +++++M+   + P   T++IL+   +   N +    ++++M    +EP  V+
Sbjct: 402 EGRMGEADDMIKEMRKKGIIPDAITYNILINGYSRCGNAKKAFDLHNEMLSKGIEPTHVT 461

Query: 203 YCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLI---ILYGYLAKGKDLERIWA 259
           Y  L   + ++R   + E   +  EK +  +   + DV++   ++ G+ A G ++ER + 
Sbjct: 462 YTSL--IYVLSRRNRMKEAD-DLFEKIL--DQGVSPDVIMFNAMVDGHCANG-NVERAFM 515

Query: 260 TVQEL------PNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISV 313
            ++E+      P+    ++   ++   R  +V  A  L  EM+          YN++IS 
Sbjct: 516 LLKEMDRKSVPPD--EVTFNTLMQGRCREGKVEEARMLLDEMKRRGIKPDHISYNTLISG 573

Query: 314 YCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKK 373
           Y + G I  A  +  EM   G  P  +TY  L + C   N  +EG  A EL +K +  K 
Sbjct: 574 YGRRGDIKDAFRVRDEMLSIGFNPTLLTYNAL-IKCLCKN--QEGDLAEEL-LKEMVNKG 629

Query: 374 VRSSTPWLETTLSIIEIFAEKGDVGNAENLFEE 406
           +   +P   T LS+IE       +GN + L E+
Sbjct: 630 I---SPDDSTYLSLIE------GMGNVDTLVED 653



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 52/230 (22%), Positives = 103/230 (44%), Gaps = 28/230 (12%)

Query: 238 LDVLIILYGYLAKGKDLERIWATVQE---LPNVRSKSYVLAIEAFGRIAQVSRAEELWLE 294
            D+L+ +   L +  +  + +  ++E   +P + + + +L++  F ++ ++  A  L+ E
Sbjct: 182 FDLLVRVCCELRRADEAFKCFYMMKEKGIVPKIETCNDMLSL--FLKLNRMEMAWVLYAE 239

Query: 295 MQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNL 354
           M  ++       +N +++V CK G + KA   +  M   G KPN ++Y          N 
Sbjct: 240 MFRLRISSTVYTFNIMVNVLCKEGKLKKAREFIGFMEGLGFKPNVVSY----------NT 289

Query: 355 VEEGFKA---LELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKAN 411
           +  G+ +   +E   +++   +V+   P   T  S+I    ++G +  A  LF+++ +  
Sbjct: 290 IIHGYSSRGNIEGARRILDAMRVKGIEPDSYTYGSLISGMCKEGRLEEASGLFDKMVEIG 349

Query: 412 YTKYTFVYNTLIKAYVKAKINDPNLLR------RMILGGARPDAETYSLL 455
                  YNTLI  Y     N  +L R       M+  G  P   TY+LL
Sbjct: 350 LVPNAVTYNTLIDGYC----NKGDLERAFSYRDEMVKKGIMPSVSTYNLL 395



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 74/342 (21%), Positives = 142/342 (41%), Gaps = 61/342 (17%)

Query: 160 KVAPHVSTFHILMKIEAND-----------------------------------HNIEGL 184
           +++  V TF+I++ +   +                                    NIEG 
Sbjct: 244 RISSTVYTFNIMVNVLCKEGKLKKAREFIGFMEGLGFKPNVVSYNTIIHGYSSRGNIEGA 303

Query: 185 MKVYSDMKRSEVEPNEVSYCILATAHAV-ARLYTVAETYVEALEKSMTGN--NWSTLDVL 241
            ++   M+   +EP+  +Y  L +      RL   +  + + +E  +  N   ++TL   
Sbjct: 304 RRILDAMRVKGIEPDSYTYGSLISGMCKEGRLEEASGLFDKMVEIGLVPNAVTYNTL--- 360

Query: 242 IILYGYLAKGKDLERIWATVQE------LPNVRSKSYVLAIEAFGRIAQVSRAEELWLEM 295
             + GY  KG DLER ++   E      +P+V   +Y L + A     ++  A+++  EM
Sbjct: 361 --IDGYCNKG-DLERAFSYRDEMVKKGIMPSV--STYNLLVHALFMEGRMGEADDMIKEM 415

Query: 296 QSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLV 355
           +    +     YN +I+ Y + G   KA  L  EM   G +P  +TY  L     + N +
Sbjct: 416 RKKGIIPDAITYNILINGYSRCGNAKKAFDLHNEMLSKGIEPTHVTYTSLIYVLSRRNRM 475

Query: 356 EEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKY 415
           +E   A +L  K++     +  +P +    ++++     G+V  A  L +E+ + +    
Sbjct: 476 KE---ADDLFEKILD----QGVSPDVIMFNAMVDGHCANGNVERAFMLLKEMDRKSVPPD 528

Query: 416 TFVYNTLIKAYVK-AKINDPN-LLRRMILGGARPDAETYSLL 455
              +NTL++   +  K+ +   LL  M   G +PD  +Y+ L
Sbjct: 529 EVTFNTLMQGRCREGKVEEARMLLDEMKRRGIKPDHISYNTL 570


>gi|15225722|ref|NP_180822.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75160493|sp|Q8S8P6.1|PP180_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g32630
 gi|20197234|gb|AAM14987.1| putative salt-inducible protein [Arabidopsis thaliana]
 gi|330253613|gb|AEC08707.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 624

 Score = 79.3 bits (194), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 86/360 (23%), Positives = 161/360 (44%), Gaps = 34/360 (9%)

Query: 111 IKLSLEYMKKMRVLGHSISYLVFNRLIILNS--SPGRRKTIPNILRQMKADKVAPHVSTF 168
           I L LE  ++M   G  I+  V++  I++      G  +    ++++     + P   T+
Sbjct: 205 IDLCLEIFRRMVDSGVKIT--VYSLTIVVEGLCRRGEVEKSKKLIKEFSVKGIKPEAYTY 262

Query: 169 HILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAV-ARLYTVAETYVEALE 227
           + ++       +  G+  V   MK+  V  N+V+Y +L        ++    + + E  E
Sbjct: 263 NTIINAYVKQRDFSGVEGVLKVMKKDGVVYNKVTYTLLMELSVKNGKMSDAEKLFDEMRE 322

Query: 228 KSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELP----NVRSKSYVLAIEAFGRIA 283
           + +     S + V   L  +  +  +++R +    EL     +  S +Y   I+   ++ 
Sbjct: 323 RGIE----SDVHVYTSLISWNCRKGNMKRAFLLFDELTEKGLSPSSYTYGALIDGVCKVG 378

Query: 284 QVSRAEELWLEMQSVKQLKATE-QYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITY 342
           ++  AE L  EMQS K +  T+  +N++I  YC+ G +D+AS +   M   G + +  T 
Sbjct: 379 EMGAAEILMNEMQS-KGVNITQVVFNTLIDGYCRKGMVDEASMIYDVMEQKGFQADVFTC 437

Query: 343 RHLALGCF-KSNLVEEG----FKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDV 397
             +A  CF +    +E     F+ +E G+KL T            +  ++I+++ ++G+V
Sbjct: 438 NTIA-SCFNRLKRYDEAKQWLFRMMEGGVKLSTV-----------SYTNLIDVYCKEGNV 485

Query: 398 GNAENLFEELKKANYTKYTFVYNTLIKAYVK-AKINDPNLLR-RMILGGARPDAETYSLL 455
             A+ LF E+           YN +I AY K  KI +   LR  M   G  PD+ TY+ L
Sbjct: 486 EEAKRLFVEMSSKGVQPNAITYNVMIYAYCKQGKIKEARKLRANMEANGMDPDSYTYTSL 545



 Score = 66.2 bits (160), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 86/368 (23%), Positives = 144/368 (39%), Gaps = 53/368 (14%)

Query: 65  YSYLLEFTIKNHGISQGEKLFC-----CIPKDYQNELLYNNLVIACLDKGVIKLSLEYMK 119
           Y+ L+E ++KN  +S  EKLF       I  D     +Y +L+     KG +K +     
Sbjct: 297 YTLLMELSVKNGKMSDAEKLFDEMRERGIESDVH---VYTSLISWNCRKGNMKRAFLLFD 353

Query: 120 KMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDH 179
           ++   G S S   +  LI      G       ++ +M++  V      F+ L+       
Sbjct: 354 ELTEKGLSPSSYTYGALIDGVCKVGEMGAAEILMNEMQSKGVNITQVVFNTLIDGYCRKG 413

Query: 180 NIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLD 239
            ++    +Y  M++   + +      + T + +A  +   + Y EA         W    
Sbjct: 414 MVDEASMIYDVMEQKGFQAD------VFTCNTIASCFNRLKRYDEA-------KQW---- 456

Query: 240 VLIILYGYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVK 299
               L+  +  G  L  +             SY   I+ + +   V  A+ L++EM S  
Sbjct: 457 ----LFRMMEGGVKLSTV-------------SYTNLIDVYCKEGNVEEAKRLFVEMSSKG 499

Query: 300 QLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALG-CFKSNLVEEG 358
                  YN +I  YCK G I +A  L   M  NG  P++ TY  L  G C   N V+E 
Sbjct: 500 VQPNAITYNVMIYAYCKQGKIKEARKLRANMEANGMDPDSYTYTSLIHGECIADN-VDEA 558

Query: 359 FKAL-ELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTF 417
            +   E+G+K +    V        T   +I   ++ G    A  L++E+K+  YT    
Sbjct: 559 MRLFSEMGLKGLDQNSV--------TYTVMISGLSKAGKSDEAFGLYDEMKRKGYTIDNK 610

Query: 418 VYNTLIKA 425
           VY  LI +
Sbjct: 611 VYTALIGS 618



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 77/346 (22%), Positives = 135/346 (39%), Gaps = 17/346 (4%)

Query: 115 LEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKI 174
           L+ MKK  V+ + ++Y +   L + N   G+      +  +M+   +   V  +  L+  
Sbjct: 282 LKVMKKDGVVYNKVTYTLLMELSVKN---GKMSDAEKLFDEMRERGIESDVHVYTSLISW 338

Query: 175 EANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNN 234
                N++    ++ ++    + P+  SY   A    V ++  +    +   E    G N
Sbjct: 339 NCRKGNMKRAFLLFDELTEKGLSPS--SYTYGALIDGVCKVGEMGAAEILMNEMQSKGVN 396

Query: 235 WSTLDVLIILYGYLAKGK-DLERIWATVQELPNVRSKSYVLAIEA--FGRIAQVSRAEEL 291
            + +    ++ GY  KG  D   +   V E    ++  +     A  F R+ +   A++ 
Sbjct: 397 ITQVVFNTLIDGYCRKGMVDEASMIYDVMEQKGFQADVFTCNTIASCFNRLKRYDEAKQW 456

Query: 292 WLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFK 351
              M       +T  Y ++I VYCK G +++A  L  EMS  G +PNAITY  +     K
Sbjct: 457 LFRMMEGGVKLSTVSYTNLIDVYCKEGNVEEAKRLFVEMSSKGVQPNAITYNVMIYAYCK 516

Query: 352 SNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKAN 411
              ++E         KL    +     P   T  S+I       +V  A  LF E+    
Sbjct: 517 QGKIKE-------ARKLRANMEANGMDPDSYTYTSLIHGECIADNVDEAMRLFSEMGLKG 569

Query: 412 YTKYTFVYNTLIKAYVKAKINDP--NLLRRMILGGARPDAETYSLL 455
             + +  Y  +I    KA  +D    L   M   G   D + Y+ L
Sbjct: 570 LDQNSVTYTVMISGLSKAGKSDEAFGLYDEMKRKGYTIDNKVYTAL 615


>gi|356575482|ref|XP_003555869.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g35130-like [Glycine max]
          Length = 576

 Score = 79.3 bits (194), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 93/442 (21%), Positives = 178/442 (40%), Gaps = 30/442 (6%)

Query: 28  EIFHSINRLRKLQLNKRALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQGEKLFC- 86
           +IF    +LR  +     + +  W++    ++P  + Y+ L+E   +     + E  +  
Sbjct: 121 DIFTVAVQLRMRKQWDSIISICRWILLRSSFKPDVICYNLLIEAFGQKLLYKEAESTYLQ 180

Query: 87  -----CIPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNS 141
                CIP +    LL     I+    G+++ +     +MR  G   S +V+N  I    
Sbjct: 181 LLEARCIPTEDTYALLIKAYCIS----GLLEKAEAVFAEMRNYGLPSSAVVYNAYINGLM 236

Query: 142 SPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEV 201
             G       I ++MK D   P   T+ +L+ +          +K++ +M   + +PN  
Sbjct: 237 KGGNSDKAEEIFKRMKKDACKPTTETYTMLINLYGKAGKSFMALKLFHEMMSHDCKPNIC 296

Query: 202 SYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATV 261
           +Y  L  A A   L   AE   E ++++    +    + L+  Y           I++ +
Sbjct: 297 TYTALVNAFAREGLCEKAEEVFEQMQEAGLEPDVYAYNALMEAYSRAGYPYGAAEIFSLM 356

Query: 262 QELPNVRSK-SYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFI 320
           Q +     + SY + ++A+G+      AE ++ +M+ V      + +  ++S Y K G +
Sbjct: 357 QHMGCEPDRASYNILVDAYGKAGFQDDAEAVFKDMKRVGITPTMKSHMVLLSAYSKMGSV 416

Query: 321 DKASGLLKEMSMNGCK-----PNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVR 375
           +K   +L +M  +G K      N++   +  LG F    +EE  + +E G          
Sbjct: 417 NKCEEILNQMCKSGLKLDTYVLNSMLNLYGRLGQFGK--MEEVLRVMEKG---------- 464

Query: 376 SSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAK--IND 433
           S    + T   +I  + + G +   E+LF+ L           + + I AY K K  +  
Sbjct: 465 SYVADISTYNILINRYGQAGFIERMEDLFQLLPSKGLKPDVVTWTSRIGAYSKKKLYLKC 524

Query: 434 PNLLRRMILGGARPDAETYSLL 455
             +   MI  G  PD  T  +L
Sbjct: 525 LEIFEEMIDDGCYPDGGTAKVL 546



 Score = 59.7 bits (143), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 73/332 (21%), Positives = 134/332 (40%), Gaps = 12/332 (3%)

Query: 33  INRLRKLQLNKRALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQGEKLFC------ 86
           IN L K   + +A E+ +  +++   +P    Y+ L+    K        KLF       
Sbjct: 232 INGLMKGGNSDKAEEIFK-RMKKDACKPTTETYTMLINLYGKAGKSFMALKLFHEMMSHD 290

Query: 87  CIPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRR 146
           C P    N   Y  LV A   +G+ + + E  ++M+  G       +N L+   S  G  
Sbjct: 291 CKP----NICTYTALVNAFAREGLCEKAEEVFEQMQEAGLEPDVYAYNALMEAYSRAGYP 346

Query: 147 KTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCIL 206
                I   M+     P  ++++IL+         +    V+ DMKR  + P   S+ +L
Sbjct: 347 YGAAEIFSLMQHMGCEPDRASYNILVDAYGKAGFQDDAEAVFKDMKRVGITPTMKSHMVL 406

Query: 207 ATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPN 266
            +A++        E  +  + KS    +   L+ ++ LYG L +   +E +   +++   
Sbjct: 407 LSAYSKMGSVNKCEEILNQMCKSGLKLDTYVLNSMLNLYGRLGQFGKMEEVLRVMEKGSY 466

Query: 267 VRS-KSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASG 325
           V    +Y + I  +G+   + R E+L+  + S         + S I  Y K     K   
Sbjct: 467 VADISTYNILINRYGQAGFIERMEDLFQLLPSKGLKPDVVTWTSRIGAYSKKKLYLKCLE 526

Query: 326 LLKEMSMNGCKPNAITYRHLALGCFKSNLVEE 357
           + +EM  +GC P+  T + L   C   +  E+
Sbjct: 527 IFEEMIDDGCYPDGGTAKVLLAACSNEDQTEQ 558


>gi|225436658|ref|XP_002276327.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g28010-like [Vitis vinifera]
          Length = 728

 Score = 79.3 bits (194), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 88/369 (23%), Positives = 168/369 (45%), Gaps = 28/369 (7%)

Query: 98  YNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMK 157
           Y  L+      G    +++ +  M   G   S + +N L+      G       ILR M 
Sbjct: 322 YTGLIDGLCKDGRATHAMDLLNLMVEKGEEPSNVTYNVLLSGLCKEGLVIDAFKILRMMI 381

Query: 158 ADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSE--VEPNEVSYCILATAHAV-AR 214
                  V T++ LMK   +   ++  +K+++ M  +E  +EPN  ++ +L        R
Sbjct: 382 EKGKKADVVTYNTLMKGLCDKGKVDEALKLFNSMFDNENCLEPNVFTFNMLIGGLCKEGR 441

Query: 215 LYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLE--RIWATVQELPNV-RSKS 271
           L    + + + ++K   GN   T ++L  L G L  GK  E   +W  V +L  V  S +
Sbjct: 442 LTKAVKIHRKMVKKGSCGN-LVTYNML--LGGCLKAGKIKEAMELWKQVLDLGFVPNSFT 498

Query: 272 YVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMS 331
           Y + I+ F ++  ++ A+ L+ EM++     A   YN++++  CK G +++A  L +EM 
Sbjct: 499 YSILIDGFCKMRMLNIAKGLFCEMRTHGLNPALFDYNTLMASLCKEGSLEQAKSLFQEMG 558

Query: 332 MNGCKPNAITYRHLALGCFKSN----LVEEGFKALELGMKLITTKKVRSSTPWLETTLSI 387
              C+P+ I++  +  G  K+     + E   K +E+G++           P   T  ++
Sbjct: 559 NANCEPDIISFNTMIDGTLKAGDFQFVKELQMKMVEMGLR-----------PDALTFSTL 607

Query: 388 IEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKINDP---NLLRRMILGG 444
           I   ++ G++  A++  E +  + +T    VY++L+K  + +K +     NLL +M   G
Sbjct: 608 INRLSKLGELDEAKSALERMVASGFTPDALVYDSLLKG-LSSKGDTTEIINLLHQMAAKG 666

Query: 445 ARPDAETYS 453
              D +  S
Sbjct: 667 TVLDRKIVS 675



 Score = 58.2 bits (139), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 83/394 (21%), Positives = 148/394 (37%), Gaps = 70/394 (17%)

Query: 96  LLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQ 155
           +LY  L+    + G +    E   +M   G S + + ++ L+      G+ K    +L  
Sbjct: 250 VLYGTLISGFCNNGNLDRGKELFDEMLGKGISANVVTYSCLVHGLCRLGQWKEANTVLNA 309

Query: 156 MKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARL 215
           M    + P V T+  L+     D      M + + M     EP+ V+Y +L +      L
Sbjct: 310 MAEHGIHPDVVTYTGLIDGLCKDGRATHAMDLLNLMVEKGEEPSNVTYNVLLSGLCKEGL 369

Query: 216 YTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSKSYVLA 275
                                 +D   IL   + KGK  + +             +Y   
Sbjct: 370 ---------------------VIDAFKILRMMIEKGKKADVV-------------TYNTL 395

Query: 276 IEAFGRIAQVSRAEELWLEMQSVKQLKATE--QYNSVISVYCKNGFIDKASGLLKEMSMN 333
           ++      +V  A +L+  M   +         +N +I   CK G + KA  + ++M   
Sbjct: 396 MKGLCDKGKVDEALKLFNSMFDNENCLEPNVFTFNMLIGGLCKEGRLTKAVKIHRKMVKK 455

Query: 334 GCKPNAITYRHLALGCFKSNLVEEGF----KALELG-----------------MKLITTK 372
           G   N +TY  L  GC K+  ++E      + L+LG                 M+++   
Sbjct: 456 GSCGNLVTYNMLLGGCLKAGKIKEAMELWKQVLDLGFVPNSFTYSILIDGFCKMRMLNIA 515

Query: 373 K-------VRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKA 425
           K            P L    +++    ++G +  A++LF+E+  AN       +NT+I  
Sbjct: 516 KGLFCEMRTHGLNPALFDYNTLMASLCKEGSLEQAKSLFQEMGNANCEPDIISFNTMIDG 575

Query: 426 YVKAKINDPNLLR----RMILGGARPDAETYSLL 455
            +KA   D   ++    +M+  G RPDA T+S L
Sbjct: 576 TLKA--GDFQFVKELQMKMVEMGLRPDALTFSTL 607



 Score = 53.5 bits (127), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 51/182 (28%), Positives = 78/182 (42%), Gaps = 9/182 (4%)

Query: 274 LAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMN 333
           + ++   R   V  A  L  EM           YN++I+  CK   + +A GLL EM   
Sbjct: 149 IVLKGLCRNGGVFEAMGLIREMGRKSVSPDIVSYNTLINGLCKAKKLKEAVGLLLEMEAA 208

Query: 334 GCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAE 393
           GC PN++T   L  G  K   ++E  + LE  MK    KK   +   L  TL  I  F  
Sbjct: 209 GCFPNSVTCTTLMDGLCKDGRMDEAMELLE-AMK----KKGFDADVVLYGTL--ISGFCN 261

Query: 394 KGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVK-AKINDPN-LLRRMILGGARPDAET 451
            G++   + LF+E+     +     Y+ L+    +  +  + N +L  M   G  PD  T
Sbjct: 262 NGNLDRGKELFDEMLGKGISANVVTYSCLVHGLCRLGQWKEANTVLNAMAEHGIHPDVVT 321

Query: 452 YS 453
           Y+
Sbjct: 322 YT 323



 Score = 52.8 bits (125), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 83/365 (22%), Positives = 144/365 (39%), Gaps = 31/365 (8%)

Query: 105 CLDKGVIKLSLEYMKKMRVLGH---SISYLVFNRLIILNSSPGRRKTIPNILRQMKADKV 161
           C + GV     E M  +R +G    S   + +N LI       + K    +L +M+A   
Sbjct: 155 CRNGGV----FEAMGLIREMGRKSVSPDIVSYNTLINGLCKAKKLKEAVGLLLEMEAAGC 210

Query: 162 APHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAV-ARLYTVAE 220
            P+  T   LM     D  ++  M++   MK+   + + V Y  L +       L    E
Sbjct: 211 FPNSVTCTTLMDGLCKDGRMDEAMELLEAMKKKGFDADVVLYGTLISGFCNNGNLDRGKE 270

Query: 221 TYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSK--------SY 272
            + E L K ++ N        ++ Y  L  G      W     + N  ++        +Y
Sbjct: 271 LFDEMLGKGISAN--------VVTYSCLVHGLCRLGQWKEANTVLNAMAEHGIHPDVVTY 322

Query: 273 VLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSM 332
              I+   +  + + A +L   M    +  +   YN ++S  CK G +  A  +L+ M  
Sbjct: 323 TGLIDGLCKDGRATHAMDLLNLMVEKGEEPSNVTYNVLLSGLCKEGLVIDAFKILRMMIE 382

Query: 333 NGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFA 392
            G K + +TY  L  G      V+E   AL+L   +   +      P + T   +I    
Sbjct: 383 KGKKADVVTYNTLMKGLCDKGKVDE---ALKLFNSMFDNENCLE--PNVFTFNMLIGGLC 437

Query: 393 EKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKA-KINDPNLLRRMILG-GARPDAE 450
           ++G +  A  +  ++ K         YN L+   +KA KI +   L + +L  G  P++ 
Sbjct: 438 KEGRLTKAVKIHRKMVKKGSCGNLVTYNMLLGGCLKAGKIKEAMELWKQVLDLGFVPNSF 497

Query: 451 TYSLL 455
           TYS+L
Sbjct: 498 TYSIL 502



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 56/228 (24%), Positives = 91/228 (39%), Gaps = 41/228 (17%)

Query: 258 WATVQELPNV--RSKSYVLAIEAFGRIAQV---------SRAEELWLEMQ------SVKQ 300
           WAT   L +   RS++Y LA   + R+  V         S   E + + Q       V  
Sbjct: 74  WATCNFLVDALARSRNYGLAFSVYRRMTHVDVLPSFGSLSALIECFADAQKPQLGFGVVG 133

Query: 301 LKATEQY-------NSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSN 353
           L     +       N V+   C+NG + +A GL++EM      P+ ++Y  L  G  K+ 
Sbjct: 134 LVLKRGFTVNVFIMNIVLKGLCRNGGVFEAMGLIREMGRKSVSPDIVSYNTLINGLCKA- 192

Query: 354 LVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYT 413
                 K L+  + L+   +     P   T  ++++   + G +  A  L E +KK  + 
Sbjct: 193 ------KKLKEAVGLLLEMEAAGCFPNSVTCTTLMDGLCKDGRMDEAMELLEAMKKKGFD 246

Query: 414 KYTFVYNTLIKAYVKAKINDPNLLR------RMILGGARPDAETYSLL 455
               +Y TLI  +     N+ NL R       M+  G   +  TYS L
Sbjct: 247 ADVVLYGTLISGFC----NNGNLDRGKELFDEMLGKGISANVVTYSCL 290


>gi|449469499|ref|XP_004152457.1| PREDICTED: pentatricopeptide repeat-containing protein At1g74900,
           mitochondrial-like [Cucumis sativus]
 gi|449487784|ref|XP_004157799.1| PREDICTED: pentatricopeptide repeat-containing protein At1g74900,
           mitochondrial-like [Cucumis sativus]
          Length = 502

 Score = 79.3 bits (194), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 79/346 (22%), Positives = 145/346 (41%), Gaps = 25/346 (7%)

Query: 118 MKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEAN 177
           M+  R+   S ++ +     +    P R      +   M+       + +F+ ++ I   
Sbjct: 138 MRARRIGPSSKTFAIIAERFVAAGKPDR---AIKVFLSMREHGCPQDLHSFNTILDILCK 194

Query: 178 DHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHA-VARLYTVAETYVEALEKSMTGNNWS 236
              +E        + R + + + VSY I+A     + R     E   E +E+ +T    +
Sbjct: 195 SKRVEMAYNNLFKVLRGKFKADVVSYNIIANGWCLIKRTPKALEVLKEMVERGLT-PTIT 253

Query: 237 TLDVLIILYGYLAKGKDLERIWATVQELPN----VRSKSYVLAIEAFGRIAQVSRAEELW 292
           T ++L  L GY   G+ L+  W    ++      +   +Y   +  FG + ++ RA +++
Sbjct: 254 TYNIL--LKGYFRAGQ-LKEAWEFFLQMKEREVEIDVVTYTTMVHGFGVVGEIKRARKVF 310

Query: 293 LEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKS 352
            EM     L +T  YN++I V CK   ++ A  + +EM   G  PN  TY  +  G F +
Sbjct: 311 NEMVGEGILPSTATYNAMIQVLCKKDSVENAVLMFEEMVKKGYVPNLTTYNVVIRGLFHA 370

Query: 353 NLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANY 412
             +++        M+ I   K     P ++T    I  F + GDV    ++FE++ + + 
Sbjct: 371 GNMDK-------AMEFIERMKTDGCEPNVQTYNVAIRYFCDAGDVEKGLSMFEKMGQGSL 423

Query: 413 TKYTFVYNTLIKA-YVKAKIND----PNLLRRMILGGARPDAETYS 453
                 YN LI A +V+ K  D      LL  M+  G  P   T++
Sbjct: 424 PNLD-TYNVLISAMFVRKKSEDLVVAGKLLLEMVDRGFIPRKFTFN 468


>gi|356510082|ref|XP_003523769.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09900-like [Glycine max]
          Length = 602

 Score = 79.3 bits (194), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 85/398 (21%), Positives = 161/398 (40%), Gaps = 48/398 (12%)

Query: 96  LLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQ 155
           + YN L+      G I  +LE +++M V    ++Y   N ++      G+ K    +L +
Sbjct: 177 ITYNVLIGGYCKSGEIDKALEVLERMSVAPDVVTY---NTILRSLCDSGKLKEAMEVLDR 233

Query: 156 MKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATA------ 209
               +  P V T+ IL++   ND  +   MK+  +M++   +P+ V+Y +L         
Sbjct: 234 QLQRECYPDVITYTILIEATCNDSGVGQAMKLLDEMRKKGCKPDVVTYNVLINGICKEGR 293

Query: 210 --HAVARLYTVAE--------TYVEALEKSMTGNNWSTLDVLI----------------I 243
              A+  L  +          T+   L    +   W   + L+                I
Sbjct: 294 LDEAIKFLNNMPSYGCKPNVITHNIILRSMCSTGRWMDAERLLSDMLRKGCSPSVVTFNI 353

Query: 244 LYGYLAKGKDLERIWATVQELPN----VRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVK 299
           L  +L + + L R    ++++P       S SY   +  F +  ++ RA E    M S  
Sbjct: 354 LINFLCRKRLLGRAIDVLEKMPKHGCVPNSLSYNPLLHGFCQEKKMDRAIEYLEIMVSRG 413

Query: 300 QLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGF 359
                  YN++++  CK+G +D A  +L ++S  GC P  ITY  +  G  K        
Sbjct: 414 CYPDIVTYNTLLTALCKDGKVDAAVEILNQLSSKGCSPVLITYNTVIDGLTK-------V 466

Query: 360 KALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVY 419
              E  ++L+   + +   P + T  +++     +G V  A  +F +++  +       Y
Sbjct: 467 GKTEYAVELLEEMRRKGLKPDIITYSTLLRGLGREGKVDEAIKIFHDMEGLSIKPSAVTY 526

Query: 420 NTLIKAYVKAKINDP--NLLRRMILGGARPDAETYSLL 455
           N ++    KA+      + L  M+  G +P   TY++L
Sbjct: 527 NAIMLGLCKAQQTSRAIDFLAYMVEKGCKPTEATYTIL 564



 Score = 62.8 bits (151), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 81/355 (22%), Positives = 145/355 (40%), Gaps = 52/355 (14%)

Query: 109 GVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTF 168
           G ++  L+++++M   G     +    LI      G+ K    I+  ++     P V T+
Sbjct: 120 GELEEGLKFLERMIYQGDIPDVIACTSLIRGFCRSGKTKKATRIMEILENSGAVPDVITY 179

Query: 169 HILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEK 228
           ++L+        I+  ++V   ++R  V P+ V+Y      + + R    +    EA+E 
Sbjct: 180 NVLIGGYCKSGEIDKALEV---LERMSVAPDVVTY------NTILRSLCDSGKLKEAME- 229

Query: 229 SMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRA 288
                    LD            + L+R     +  P+V   +Y + IEA    + V +A
Sbjct: 230 --------VLD------------RQLQR-----ECYPDV--ITYTILIEATCNDSGVGQA 262

Query: 289 EELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALG 348
            +L  EM+          YN +I+  CK G +D+A   L  M   GCKPN IT+      
Sbjct: 263 MKLLDEMRKKGCKPDVVTYNVLINGICKEGRLDEAIKFLNNMPSYGCKPNVITH------ 316

Query: 349 CFKSNLVEEGFKALELGM---KLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFE 405
               N++     +    M   +L++    +  +P + T   +I     K  +G A ++ E
Sbjct: 317 ----NIILRSMCSTGRWMDAERLLSDMLRKGCSPSVVTFNILINFLCRKRLLGRAIDVLE 372

Query: 406 ELKKANYTKYTFVYNTLIKAYVKAKINDPNL--LRRMILGGARPDAETYSLLKLA 458
           ++ K      +  YN L+  + + K  D  +  L  M+  G  PD  TY+ L  A
Sbjct: 373 KMPKHGCVPNSLSYNPLLHGFCQEKKMDRAIEYLEIMVSRGCYPDIVTYNTLLTA 427



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 77/348 (22%), Positives = 134/348 (38%), Gaps = 47/348 (13%)

Query: 43  KRALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQGEKLF------CCIPKDYQNEL 96
           K A+EV++  ++   Y P  + Y+ L+E T  + G+ Q  KL        C P    + +
Sbjct: 225 KEAMEVLDRQLQRECY-PDVITYTILIEATCNDSGVGQAMKLLDEMRKKGCKP----DVV 279

Query: 97  LYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQM 156
            YN L+     +G +  +++++  M   G   + +  N ++    S GR      +L  M
Sbjct: 280 TYNVLINGICKEGRLDEAIKFLNNMPSYGCKPNVITHNIILRSMCSTGRWMDAERLLSDM 339

Query: 157 KADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLY 216
                +P V TF+IL+        +   + V   M +    PN +SY  L       +  
Sbjct: 340 LRKGCSPSVVTFNILINFLCRKRLLGRAIDVLEKMPKHGCVPNSLSYNPLLHGFCQEKKM 399

Query: 217 TVAETYVEALEKSMTGNNWSTLDVLI--------------ILYGYLAKG----------- 251
             A  Y+E +       +  T + L+              IL    +KG           
Sbjct: 400 DRAIEYLEIMVSRGCYPDIVTYNTLLTALCKDGKVDAAVEILNQLSSKGCSPVLITYNTV 459

Query: 252 -KDLERIWAT---VQELPNVRSK-------SYVLAIEAFGRIAQVSRAEELWLEMQSVKQ 300
              L ++  T   V+ L  +R K       +Y   +   GR  +V  A +++ +M+ +  
Sbjct: 460 IDGLTKVGKTEYAVELLEEMRRKGLKPDIITYSTLLRGLGREGKVDEAIKIFHDMEGLSI 519

Query: 301 LKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALG 348
             +   YN+++   CK     +A   L  M   GCKP   TY  L  G
Sbjct: 520 KPSAVTYNAIMLGLCKAQQTSRAIDFLAYMVEKGCKPTEATYTILIEG 567



 Score = 49.7 bits (117), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 41/179 (22%), Positives = 85/179 (47%), Gaps = 15/179 (8%)

Query: 33  INRLRKLQLNKRALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQGEKLFCCIP--- 89
           IN L + +L  RA++V+E + +     P  L Y+ LL      HG  Q +K+   I    
Sbjct: 355 INFLCRKRLLGRAIDVLEKMPKHGCV-PNSLSYNPLL------HGFCQEKKMDRAIEYLE 407

Query: 90  -----KDYQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPG 144
                  Y + + YN L+ A    G +  ++E + ++   G S   + +N +I   +  G
Sbjct: 408 IMVSRGCYPDIVTYNTLLTALCKDGKVDAAVEILNQLSSKGCSPVLITYNTVIDGLTKVG 467

Query: 145 RRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSY 203
           + +    +L +M+   + P + T+  L++    +  ++  +K++ DM+   ++P+ V+Y
Sbjct: 468 KTEYAVELLEEMRRKGLKPDIITYSTLLRGLGREGKVDEAIKIFHDMEGLSIKPSAVTY 526


>gi|15242557|ref|NP_195906.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75181167|sp|Q9LYZ9.1|PP362_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g02860
 gi|7413561|emb|CAB86040.1| putative protein [Arabidopsis thaliana]
 gi|332003145|gb|AED90528.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 819

 Score = 79.3 bits (194), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 86/405 (21%), Positives = 160/405 (39%), Gaps = 72/405 (17%)

Query: 90  KDYQNELLYNNLVIACL-----DKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPG 144
           KDYQ+ L  +N V+A +      +G +  +      ++  G S+    +  LI   ++ G
Sbjct: 165 KDYQSML--DNSVVAIIISMLGKEGRVSSAANMFNGLQEDGFSLDVYSYTSLISAFANSG 222

Query: 145 RRKTIPNILRQMKADKVAPHVSTFHILMKIEAN-DHNIEGLMKVYSDMKRSEVEPNEVSY 203
           R +   N+ ++M+ D   P + T+++++ +          +  +   MK   + P+  +Y
Sbjct: 223 RYREAVNVFKKMEEDGCKPTLITYNVILNVFGKMGTPWNKITSLVEKMKSDGIAPDAYTY 282

Query: 204 CILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQE 263
             L T      L+  A    E ++ +    +  T + L+ +YG   + K+  ++   +  
Sbjct: 283 NTLITCCKRGSLHQEAAQVFEEMKAAGFSYDKVTYNALLDVYGKSHRPKEAMKVLNEM-- 340

Query: 264 LPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKA 323
           + N  S S V                                 YNS+IS Y ++G +D+A
Sbjct: 341 VLNGFSPSIV--------------------------------TYNSLISAYARDGMLDEA 368

Query: 324 SGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALE----LG-------------- 365
             L  +M+  G KP+  TY  L  G  ++  VE      E     G              
Sbjct: 369 MELKNQMAEKGTKPDVFTYTTLLSGFERAGKVESAMSIFEEMRNAGCKPNICTFNAFIKM 428

Query: 366 ----------MKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKY 415
                     MK+     V   +P + T  +++ +F + G       +F+E+K+A +   
Sbjct: 429 YGNRGKFTEMMKIFDEINVCGLSPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPE 488

Query: 416 TFVYNTLIKAYVKAKINDP--NLLRRMILGGARPDAETYSLLKLA 458
              +NTLI AY +    +    + RRM+  G  PD  TY+ +  A
Sbjct: 489 RETFNTLISAYSRCGSFEQAMTVYRRMLDAGVTPDLSTYNTVLAA 533



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 73/367 (19%), Positives = 157/367 (42%), Gaps = 18/367 (4%)

Query: 96  LLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQ 155
           + YN+L+ A    G++  ++E   +M   G       +  L+      G+ ++  +I  +
Sbjct: 350 VTYNSLISAYARDGMLDEAMELKNQMAEKGTKPDVFTYTTLLSGFERAGKVESAMSIFEE 409

Query: 156 MKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARL 215
           M+     P++ TF+  +K+  N      +MK++ ++    + P+ V++  L        +
Sbjct: 410 MRNAGCKPNICTFNAFIKMYGNRGKFTEMMKIFDEINVCGLSPDIVTWNTLLAVFGQNGM 469

Query: 216 YTVAETYVEALEKSMTGNNWSTLDVLIILY---GYLAKGKDLERIWATVQELPNVRSKSY 272
            +      + ++++       T + LI  Y   G   +   + R        P++ + + 
Sbjct: 470 DSEVSGVFKEMKRAGFVPERETFNTLISAYSRCGSFEQAMTVYRRMLDAGVTPDLSTYNT 529

Query: 273 VLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSM 332
           VLA  A  R     ++E++  EM+  +       Y S++  Y     I     L +E+  
Sbjct: 530 VLA--ALARGGMWEQSEKVLAEMEDGRCKPNELTYCSLLHAYANGKEIGLMHSLAEEVYS 587

Query: 333 NGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFA 392
              +P A+  + L L C K +L+ E  +A        +  K R  +P + T  S++ I+ 
Sbjct: 588 GVIEPRAVLLKTLVLVCSKCDLLPEAERAF-------SELKERGFSPDITTLNSMVSIYG 640

Query: 393 EKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKIND----PNLLRRMILGGARPD 448
            +  V  A  + + +K+  +T     YN+L+  Y+ ++  D      +LR ++  G +PD
Sbjct: 641 RRQMVAKANGVLDYMKERGFTPSMATYNSLM--YMHSRSADFGKSEEILREILAKGIKPD 698

Query: 449 AETYSLL 455
             +Y+ +
Sbjct: 699 IISYNTV 705



 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 69/341 (20%), Positives = 140/341 (41%), Gaps = 49/341 (14%)

Query: 118 MKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEAN 177
            K+M+  G       FN LI   S  G  +    + R+M    V P +ST++ ++   A 
Sbjct: 477 FKEMKRAGFVPERETFNTLISAYSRCGSFEQAMTVYRRMLDAGVTPDLSTYNTVLAALAR 536

Query: 178 DHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWST 237
               E   KV ++M+    +PNE++YC L  A+A  +   +  +  E +   +       
Sbjct: 537 GGMWEQSEKVLAEMEDGRCKPNELTYCSLLHAYANGKEIGLMHSLAEEVYSGVIEPRAVL 596

Query: 238 LDVLIILYGYLAKGKDLERIWATVQEL---PNVRSKSYVLAIEAFGRIAQVSRAEELWLE 294
           L  L+++        + ER ++ ++E    P++ + + +++I  +GR   V++A  +   
Sbjct: 597 LKTLVLVCSKCDLLPEAERAFSELKERGFSPDITTLNSMVSI--YGRRQMVAKANGVLDY 654

Query: 295 MQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNL 354
           M+      +   YNS++ ++ ++    K+  +L+E+   G KP+ I+Y            
Sbjct: 655 MKERGFTPSMATYNSLMYMHSRSADFGKSEEILREILAKGIKPDIISYN----------- 703

Query: 355 VEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTK 414
                                          ++I  +     + +A  +F E++ +    
Sbjct: 704 -------------------------------TVIYAYCRNTRMRDASRIFSEMRNSGIVP 732

Query: 415 YTFVYNTLIKAYVKAKINDP--NLLRRMILGGARPDAETYS 453
               YNT I +Y    + +    ++R MI  G RP+  TY+
Sbjct: 733 DVITYNTFIGSYAADSMFEEAIGVVRYMIKHGCRPNQNTYN 773



 Score = 62.4 bits (150), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 100/479 (20%), Positives = 186/479 (38%), Gaps = 86/479 (17%)

Query: 8   EPVGSAFQSWMREGFPVHRGEIFHSINRLRKLQLNKRALEVMEWVIRERPYRPKELDYSY 67
           EP     +S   E     +G  FH     +K  L   AL   +W ++++ Y+   LD S 
Sbjct: 125 EPFKDKPESTSSELLAFLKGLGFH-----KKFDL---ALRAFDWFMKQKDYQ-SMLDNSV 175

Query: 68  ---LLEFTIKNHGISQGEKLFCCIPKD--YQNELLYNNLVIACLDKGVIKLSLEYMKKMR 122
              ++    K   +S    +F  + +D    +   Y +L+ A  + G  + ++   KKM 
Sbjct: 176 VAIIISMLGKEGRVSSAANMFNGLQEDGFSLDVYSYTSLISAFANSGRYREAVNVFKKME 235

Query: 123 VLGHSISYLVFNRLIILNSSPGRRKT----IPNILRQMKADKVAPHVSTFHIL------- 171
             G   + + +N  +ILN   G+  T    I +++ +MK+D +AP   T++ L       
Sbjct: 236 EDGCKPTLITYN--VILNVF-GKMGTPWNKITSLVEKMKSDGIAPDAYTYNTLITCCKRG 292

Query: 172 ----------------------------MKIEANDHNIEGLMKVYSDMKRSEVEPNEVSY 203
                                       + +    H  +  MKV ++M  +   P+ V+Y
Sbjct: 293 SLHQEAAQVFEEMKAAGFSYDKVTYNALLDVYGKSHRPKEAMKVLNEMVLNGFSPSIVTY 352

Query: 204 CILATAHAVARLYTVAETYVEALE-KSMTGNNWSTLDVL---IILYGYLAKGKDLERIWA 259
             L +A+A   +        EA+E K+      +  DV     +L G+   GK +E   +
Sbjct: 353 NSLISAYARDGMLD------EAMELKNQMAEKGTKPDVFTYTTLLSGFERAGK-VESAMS 405

Query: 260 TVQELPNVRSKSYVLAIEAF----GRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYC 315
             +E+ N   K  +    AF    G   + +   +++ E+           +N++++V+ 
Sbjct: 406 IFEEMRNAGCKPNICTFNAFIKMYGNRGKFTEMMKIFDEINVCGLSPDIVTWNTLLAVFG 465

Query: 316 KNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGF----KALELGMKLITT 371
           +NG   + SG+ KEM   G  P   T+  L     +    E+      + L+ G+     
Sbjct: 466 QNGMDSEVSGVFKEMKRAGFVPERETFNTLISAYSRCGSFEQAMTVYRRMLDAGV----- 520

Query: 372 KKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAK 430
                 TP L T  +++   A  G    +E +  E++          Y +L+ AY   K
Sbjct: 521 ------TPDLSTYNTVLAALARGGMWEQSEKVLAEMEDGRCKPNELTYCSLLHAYANGK 573



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 67/302 (22%), Positives = 123/302 (40%), Gaps = 46/302 (15%)

Query: 98  YNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMK 157
           +N L+ A    G  + ++   ++M   G +     +N ++   +  G  +    +L +M+
Sbjct: 492 FNTLISAYSRCGSFEQAMTVYRRMLDAGVTPDLSTYNTVLAALARGGMWEQSEKVLAEME 551

Query: 158 ADKVAPHVSTFHILMKIEANDHNIEGLM-----KVYSDMKRSEVEPNEVSYCILATAHAV 212
             +  P+  T+  L+   AN   I GLM     +VYS +    +EP  V    L    + 
Sbjct: 552 DGRCKPNELTYCSLLHAYANGKEI-GLMHSLAEEVYSGV----IEPRAVLLKTLVLVCSK 606

Query: 213 ARLYTVAETYVEALEKSMTGNNWSTLDVLIILYG---YLAKGKDL-----ERIW----AT 260
             L   AE     L++     + +TL+ ++ +YG    +AK   +     ER +    AT
Sbjct: 607 CDLLPEAERAFSELKERGFSPDITTLNSMVSIYGRRQMVAKANGVLDYMKERGFTPSMAT 666

Query: 261 VQELPNVRSKS------------------------YVLAIEAFGRIAQVSRAEELWLEMQ 296
              L  + S+S                        Y   I A+ R  ++  A  ++ EM+
Sbjct: 667 YNSLMYMHSRSADFGKSEEILREILAKGIKPDIISYNTVIYAYCRNTRMRDASRIFSEMR 726

Query: 297 SVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVE 356
           +   +     YN+ I  Y  +   ++A G+++ M  +GC+PN  TY  +  G  K N  +
Sbjct: 727 NSGIVPDVITYNTFIGSYAADSMFEEAIGVVRYMIKHGCRPNQNTYNSIVDGYCKLNRKD 786

Query: 357 EG 358
           E 
Sbjct: 787 EA 788


>gi|449438480|ref|XP_004137016.1| PREDICTED: pentatricopeptide repeat-containing protein At1g03560,
           mitochondrial-like [Cucumis sativus]
          Length = 651

 Score = 79.0 bits (193), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 73/311 (23%), Positives = 138/311 (44%), Gaps = 18/311 (5%)

Query: 152 ILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHA 211
           + R+MK + + P + T++ L+    N   IE   KV+  M   ++ P+ V+Y I+   + 
Sbjct: 205 VWRRMKENGIDPSLYTYNFLVNGLVNSMFIESAEKVFEVMDGGKIVPDTVTYNIMIKGYC 264

Query: 212 VA-RLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPN---- 266
            A +L    E + +   K++  +  + + ++   Y      +D +   +   E+      
Sbjct: 265 KAGKLQKAMEKFRDMEMKNVKPDKITYMTLIQACYSE----RDFDTCLSLYLEMEERGLE 320

Query: 267 VRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGL 326
           +   SY L I    +  +   A  ++  M           Y ++I  Y KNG +++A  L
Sbjct: 321 IPPHSYSLVIGGLCKQRKCMEAYAVFETMNQKGCRANVAIYTALIDSYSKNGSMEEAMRL 380

Query: 327 LKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLS 386
            + M   G +P+A+TY  L  G  KS  +++G +  +        K V  +  +     S
Sbjct: 381 FERMKNEGFEPDAVTYSVLVNGLCKSGRLDDGMELFD----FCRNKGVAINAMFYA---S 433

Query: 387 IIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVK-AKINDP-NLLRRMILGG 444
           +I+   + G + +AENLFEE+ +    + ++ YN +I A  K  KI+    L  RM   G
Sbjct: 434 LIDGLGKAGRIEDAENLFEEMSEKGCARDSYCYNAIIDALAKHGKIDQALALFGRMEEEG 493

Query: 445 ARPDAETYSLL 455
                 T+++L
Sbjct: 494 CDQTVYTFTIL 504



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 63/278 (22%), Positives = 109/278 (39%), Gaps = 46/278 (16%)

Query: 152 ILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHA 211
           +   M       +V+ +  L+   + + ++E  M+++  MK    EP+ V+Y +L     
Sbjct: 345 VFETMNQKGCRANVAIYTALIDSYSKNGSMEEAMRLFERMKNEGFEPDAVTYSVL----- 399

Query: 212 VARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLA-KGKDLERIWATVQELPNVRSK 270
                      V  L KS        LD  + L+ +   KG  +  ++            
Sbjct: 400 -----------VNGLCKS------GRLDDGMELFDFCRNKGVAINAMF------------ 430

Query: 271 SYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEM 330
            Y   I+  G+  ++  AE L+ EM      + +  YN++I    K+G ID+A  L   M
Sbjct: 431 -YASLIDGLGKAGRIEDAENLFEEMSEKGCARDSYCYNAIIDALAKHGKIDQALALFGRM 489

Query: 331 SMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEI 390
              GC     T+  L  G FK +  EE  K  +   K+I     +  TP + +  ++   
Sbjct: 490 EEEGCDQTVYTFTILIDGLFKEHKNEEAIKFWD---KMID----KGITPTVASFRALAIG 542

Query: 391 FAEKGDVGNAENLFEELKKANY---TKYTFVYNTLIKA 425
               G V  A  + ++L        T +  + NTL KA
Sbjct: 543 LCLCGKVARACKILDDLAPMGIIPETAFEDMINTLCKA 580



 Score = 52.4 bits (124), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 58/225 (25%), Positives = 94/225 (41%), Gaps = 14/225 (6%)

Query: 236 STLDVLIILYGYLAKGKDLERIWATVQE---LPNVRSKSYVLAIEAFGRIAQVSRAEELW 292
           S  + LI  +G L   ++L  +W  ++E    P++ +  Y   +        +  AE+++
Sbjct: 184 SAANSLIKSFGNLGLVEELLWVWRRMKENGIDPSLYT--YNFLVNGLVNSMFIESAEKVF 241

Query: 293 LEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKS 352
             M   K +  T  YN +I  YCK G + KA    ++M M   KP+ ITY  L   C+  
Sbjct: 242 EVMDGGKIVPDTVTYNIMIKGYCKAGKLQKAMEKFRDMEMKNVKPDKITYMTLIQACYS- 300

Query: 353 NLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANY 412
              E  F    L + L   ++     P   +   +I    ++     A  +FE + +   
Sbjct: 301 ---ERDFDTC-LSLYLEMEERGLEIPP--HSYSLVIGGLCKQRKCMEAYAVFETMNQKGC 354

Query: 413 TKYTFVYNTLIKAYVKAKINDP--NLLRRMILGGARPDAETYSLL 455
                +Y  LI +Y K    +    L  RM   G  PDA TYS+L
Sbjct: 355 RANVAIYTALIDSYSKNGSMEEAMRLFERMKNEGFEPDAVTYSVL 399


>gi|222622462|gb|EEE56594.1| hypothetical protein OsJ_05954 [Oryza sativa Japonica Group]
          Length = 579

 Score = 79.0 bits (193), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 101/463 (21%), Positives = 198/463 (42%), Gaps = 58/463 (12%)

Query: 44  RALEVM-EWVIRERPYRPKELDYSYLLEFTIKNHGISQGEKLFCCIP-KDYQNELL-YNN 100
           R LE+  +W +R   Y      Y  +++  +++  +S+G +++  +  K Y+ ++  YN 
Sbjct: 114 RCLELASKWGLRLSGYT-----YKCIVQAHLRSREVSKGFQVYEEMRRKGYKLDIFAYNM 168

Query: 101 LVIACLDKGVIKLSL---EYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMK 157
           L+ A    G++  +    E MK+   +  + +Y +   LI ++   GR     +   +M 
Sbjct: 169 LLDALAKAGMVDQAFQVFEDMKQKHCVPDAYTYTI---LIRMSGKAGRTSKFLSFFDEMV 225

Query: 158 ADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCI----LATAHAVA 213
           +     ++  F+ +++    +  ++ ++ V S M  ++ +PN+ +Y I    LAT   + 
Sbjct: 226 SKGCVLNLIAFNTIIEALGKNKMVDKVIFVLSKMVENDCQPNQFTYSITLDILATEGQLH 285

Query: 214 RLYTVAETYVEALEKSM----------TGNNWSTLDVLIILYGYLAKGKDLERIWATVQE 263
           RL  V +     + +S+          +G+     +V   ++    KG D +   + ++ 
Sbjct: 286 RLNEVLDICSRFMNRSIYSYLVKSLCKSGHASEAHNVFCRMWNSHEKG-DRDAFVSMLEV 344

Query: 264 LPNVRSK--------------------SYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKA 303
           L N                         Y +   A G++ QVS    L+ +M++   +  
Sbjct: 345 LCNAEKTLEAIDLLHMMPEKGIVTDVGMYNMVFSALGKLKQVSFISNLFDKMKTNGIIPD 404

Query: 304 TEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALE 363
              YN +IS Y + G +DKAS L + M  + CKP+ +TY  L + C   +        L+
Sbjct: 405 VFTYNIMISSYGRVGLVDKASELFEVMEASSCKPDVVTYNSL-INCLGKH------GDLD 457

Query: 364 LGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLI 423
               L    + +   P + T   +IE F +   V  A +LF+E+     T     YN L+
Sbjct: 458 EAHMLFKEMQEKGYDPDVFTYSILIECFGKSNKVEMACSLFDEMISEGCTPNIVTYNILL 517

Query: 424 KAY-VKAKINDPN-LLRRMILGGARPDAETYSLLKLAEQFQKK 464
                + K  + + L   M   G  PD+ TYS+L+  E   ++
Sbjct: 518 DCLERRGKTEEAHKLYETMKQQGLIPDSITYSILERLESRSQR 560


>gi|449515696|ref|XP_004164884.1| PREDICTED: pentatricopeptide repeat-containing protein At3g54980,
           mitochondrial-like [Cucumis sativus]
          Length = 657

 Score = 79.0 bits (193), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 80/372 (21%), Positives = 160/372 (43%), Gaps = 25/372 (6%)

Query: 94  NELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNIL 153
           N++ Y+ L+  C   G I+ + E+  +M+  G   S    N ++         +    + 
Sbjct: 179 NKVTYSVLIDGCCKNGNIEKAFEFYSEMKTKGIRSSVYSLNSILEGYLKCQSWQNAFTMF 238

Query: 154 RQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHA-V 212
                  +A +V TF+ L+     +  +     ++ ++    + PN VSY  +   H   
Sbjct: 239 NDALESGLA-NVFTFNTLLSWLCKEGKMNEACNLWDEVIAKGISPNVVSYNNIILGHCRK 297

Query: 213 ARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVR---- 268
             +    + Y E L+   T N    +   I++ GY  KG D+E  ++    + +      
Sbjct: 298 DNINAACKVYKEMLDNGFTPN---AVTFTILMDGYFKKG-DIENAFSIFHRMKDANILPT 353

Query: 269 SKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLK 328
             +  + I+   +  +     +L+ +  S   +     YN++I  + K G I+ AS + +
Sbjct: 354 DTTLGIIIKGLCKAGRSFEGRDLFNKFVSQGFVPTCMPYNTIIDGFIKEGNINLASNVYR 413

Query: 329 EMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSII 388
           EM   G  P+ +TY  L  G  K N        ++L +KL+   K +     ++   ++I
Sbjct: 414 EMCEVGITPSTVTYTSLIDGFCKGN-------NIDLALKLLNDMKRKGLKMDIKAYGTLI 466

Query: 389 EIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAY-----VKAKINDPNLLRRMILG 443
           + F ++ D+ +A  L  EL+ A  +   F+YN++I  +     V+  I   +L ++M+  
Sbjct: 467 DGFCKRRDMKSAHELLNELRGAGLSPNRFIYNSMITGFKNMNNVEEAI---DLYKKMVNE 523

Query: 444 GARPDAETYSLL 455
           G   D +TY+ L
Sbjct: 524 GIPCDLKTYTSL 535



 Score = 68.6 bits (166), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 81/364 (22%), Positives = 148/364 (40%), Gaps = 46/364 (12%)

Query: 95  ELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILR 154
           E  + +++ AC+ +G +  +L     M   G S++  V   L+      G  ++   ++ 
Sbjct: 110 EGTFTSVITACVKEGNVAEALRLKDDMVNCGKSMNLAVATSLMKGYCMQGNLRSALVLVN 169

Query: 155 QMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVAR 214
           ++    + P+  T+ +L+     + NIE   + YS+MK   +              +V  
Sbjct: 170 EISESGLVPNKVTYSVLIDGCCKNGNIEKAFEFYSEMKTKGIRS------------SVYS 217

Query: 215 LYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSKSYVL 274
           L ++ E Y++         +W   +   +    L  G            L NV + + +L
Sbjct: 218 LNSILEGYLKC-------QSWQ--NAFTMFNDALESG------------LANVFTFNTLL 256

Query: 275 AIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNG 334
           +     +  +++ A  LW E+ +         YN++I  +C+   I+ A  + KEM  NG
Sbjct: 257 S--WLCKEGKMNEACNLWDEVIAKGISPNVVSYNNIILGHCRKDNINAACKVYKEMLDNG 314

Query: 335 CKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLS-IIEIFAE 393
             PNA+T+  L  G FK   +E  F         I  +   ++    +TTL  II+   +
Sbjct: 315 FTPNAVTFTILMDGYFKKGDIENAFS--------IFHRMKDANILPTDTTLGIIIKGLCK 366

Query: 394 KGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVK-AKIN-DPNLLRRMILGGARPDAET 451
            G      +LF +     +      YNT+I  ++K   IN   N+ R M   G  P   T
Sbjct: 367 AGRSFEGRDLFNKFVSQGFVPTCMPYNTIIDGFIKEGNINLASNVYREMCEVGITPSTVT 426

Query: 452 YSLL 455
           Y+ L
Sbjct: 427 YTSL 430



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 100/498 (20%), Positives = 184/498 (36%), Gaps = 95/498 (19%)

Query: 39  LQLNKRALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQGEKLFCCIPKDYQNELLY 98
           +Q N R+  V+   I E    P ++ YS L++   KN  I +  + +  +        +Y
Sbjct: 157 MQGNLRSALVLVNEISESGLVPNKVTYSVLIDGCCKNGNIEKAFEFYSEMKTKGIRSSVY 216

Query: 99  NNLVIACLDKGVIKLSLEYMKKMRVLGHSI-----SYLVFNRLIILNSSPGRRKTIPNIL 153
           +   +  + +G +K    +     +   ++     +   FN L+      G+     N+ 
Sbjct: 217 S---LNSILEGYLKCQ-SWQNAFTMFNDALESGLANVFTFNTLLSWLCKEGKMNEACNLW 272

Query: 154 RQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVA 213
            ++ A  ++P+V +++ ++       NI    KVY +M  +   PN V++ IL   +   
Sbjct: 273 DEVIAKGISPNVVSYNNIILGHCRKDNINAACKVYKEMLDNGFTPNAVTFTILMDGYFKK 332

Query: 214 RLYTVAETYVEALEKSMTGNNWSTLDVLI---ILYGYLAKGKDLERIWATVQELPNVRSK 270
                A +    ++ +      +TL ++I      G   +G+DL   + +   +P     
Sbjct: 333 GDIENAFSIFHRMKDANILPTDTTLGIIIKGLCKAGRSFEGRDLFNKFVSQGFVPTCMP- 391

Query: 271 SYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEM 330
            Y   I+ F +   ++ A  ++ EM  V    +T  Y S+I  +CK   ID A  LL +M
Sbjct: 392 -YNTIIDGFIKEGNINLASNVYREMCEVGITPSTVTYTSLIDGFCKGNNIDLALKLLNDM 450

Query: 331 SMNG---------------CK--------------------PNAITYRHLALGCFKSNLV 355
              G               CK                    PN   Y  +  G    N V
Sbjct: 451 KRKGLKMDIKAYGTLIDGFCKRRDMKSAHELLNELRGAGLSPNRFIYNSMITGFKNMNNV 510

Query: 356 EEGFKALELGMKLITTK---KVRSSTPWLETTLS-------------------------- 386
           EE   A++L  K++       +++ T  ++  L                           
Sbjct: 511 EE---AIDLYKKMVNEGIPCDLKTYTSLIDGLLKSGRLLYASDIHTEMLSKGILPDDRAH 567

Query: 387 --IIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKA-------KINDPNLL 437
             +I     KG   NA  + E++   N      +YNTLI  + K        +++D  L 
Sbjct: 568 TVLINGLCNKGQFENARKILEDMNGKNMIPSVLIYNTLIAGHFKEGNLQEAFRLHDEMLD 627

Query: 438 RRMILGGARPDAETYSLL 455
           R ++     PD  TY +L
Sbjct: 628 RGLV-----PDNITYDIL 640



 Score = 40.0 bits (92), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 68/342 (19%), Positives = 126/342 (36%), Gaps = 48/342 (14%)

Query: 55  ERPYRPKELDYSYLLEFTIKNHGISQGEKLFCCIPKDYQNELLYNNLVIACLDKGVIKLS 114
           +  + P  + ++ L++   K   I   E  F    +     +L  +  +  + KG+ K  
Sbjct: 312 DNGFTPNAVTFTILMDGYFKKGDI---ENAFSIFHRMKDANILPTDTTLGIIIKGLCKAG 368

Query: 115 LEY-----MKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFH 169
             +       K    G   + + +N +I      G      N+ R+M    + P   T+ 
Sbjct: 369 RSFEGRDLFNKFVSQGFVPTCMPYNTIIDGFIKEGNINLASNVYREMCEVGITPSTVTYT 428

Query: 170 ILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKS 229
            L+      +NI+  +K+ +DMKR  ++ +  +Y  L       R    A   +  L  +
Sbjct: 429 SLIDGFCKGNNIDLALKLLNDMKRKGLKMDIKAYGTLIDGFCKRRDMKSAHELLNELRGA 488

Query: 230 ------------MTG-NNWSTLDVLIILY--------------------GYLAKGK---- 252
                       +TG  N + ++  I LY                    G L  G+    
Sbjct: 489 GLSPNRFIYNSMITGFKNMNNVEEAIDLYKKMVNEGIPCDLKTYTSLIDGLLKSGRLLYA 548

Query: 253 -DLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVI 311
            D+     +   LP+ R+  + + I       Q   A ++  +M     + +   YN++I
Sbjct: 549 SDIHTEMLSKGILPDDRA--HTVLINGLCNKGQFENARKILEDMNGKNMIPSVLIYNTLI 606

Query: 312 SVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSN 353
           + + K G + +A  L  EM   G  P+ ITY  L  G FK +
Sbjct: 607 AGHFKEGNLQEAFRLHDEMLDRGLVPDNITYDILVNGKFKGD 648


>gi|357113916|ref|XP_003558747.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g01110-like [Brachypodium distachyon]
          Length = 651

 Score = 79.0 bits (193), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 86/405 (21%), Positives = 171/405 (42%), Gaps = 24/405 (5%)

Query: 59  RPKELDYSYLLEFTIKNHGISQGEKLF-----CCIPKDYQNELLYNNLVIACLDKGVIKL 113
           +P  + Y+ +L+  ++N    +  ++F     C +  D ++   +N L+      G ++ 
Sbjct: 226 KPGLVTYNSVLKGLLRNGRWDKAREVFRAMDACGVAPDVRS---FNMLIGGFCRAGELEE 282

Query: 114 SLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMK 173
           +L + K+MR    +   + F+ LI L +  G        LR+M+   + P    + +++ 
Sbjct: 283 ALRFYKEMRGRRVTPDVVSFSCLIGLFTRRGEMDHAAEYLREMREFGLMPDGVIYTMVIG 342

Query: 174 IEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGN 233
                  +   ++V  +M      P+ V+Y  L       R  + AE  +  +++     
Sbjct: 343 GFCRAGLMLEALRVRDEMVAFGCLPDVVTYNTLLNGLCKERRLSDAEELLNEMKERGVPP 402

Query: 234 NWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSK----SYVLAIEAFGRIAQVSRAE 289
           +  T   LI  +GY   G ++E+       + + R +    +Y   I+   R   + +A 
Sbjct: 403 DLCTFTTLI--HGYCRDG-NIEKALQFFDTISDQRLRPDIVTYNTLIDGMCRQGDLGKAN 459

Query: 290 ELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGC 349
           ELW +M S +       Y+ +I  +C+ G +D A   L EM   G  PN +TY  +  G 
Sbjct: 460 ELWDDMHSREIFPNHVTYSILIDSHCEKGQVDNAFAFLDEMVNKGIVPNIMTYNSIIKGY 519

Query: 350 FKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKK 409
            +S  V +       G + +   +     P L T  ++I  + ++G +  A NL + ++ 
Sbjct: 520 CRSGNVSK-------GQQFLPKMRHDKVMPDLITYNTLIHGYVKEGKMHEAFNLLKIMEN 572

Query: 410 ANYTKYTFVYNTLIKAY-VKAKINDPN-LLRRMILGGARPDAETY 452
            N       YN +I  + V   + + + + ++M   G  PD  TY
Sbjct: 573 ENVQPDAVTYNMIISGFSVHGNMQEADWVYKKMGARGIEPDRYTY 617



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 97/427 (22%), Positives = 176/427 (41%), Gaps = 46/427 (10%)

Query: 65  YSYLLEFTIKNHGISQGEKLFCCIPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMRVL 124
           Y   L+F   +  IS+ EK  C  P    + + +N +V A    G ++ ++  +  M   
Sbjct: 169 YCKTLQFGEVDTVISEMEKR-CVFP----DVVTHNVMVDARFRAGDVEAAMALIDSMVSK 223

Query: 125 GHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGL 184
           G     + +N ++      GR      + R M A  VAP V +F++L+        +E  
Sbjct: 224 GIKPGLVTYNSVLKGLLRNGRWDKAREVFRAMDACGVAPDVRSFNMLIGGFCRAGELEEA 283

Query: 185 MKVYSDMKRSEVEPNEVSY-CILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLII 243
           ++ Y +M+   V P+ VS+ C++        +   AE   E  E  +  +    +   ++
Sbjct: 284 LRFYKEMRGRRVTPDVVSFSCLIGLFTRRGEMDHAAEYLREMREFGLMPDG---VIYTMV 340

Query: 244 LYGYLAKGKDLERI-----WATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSV 298
           + G+   G  LE +           LP+V   +Y   +    +  ++S AEEL  EM+  
Sbjct: 341 IGGFCRAGLMLEALRVRDEMVAFGCLPDV--VTYNTLLNGLCKERRLSDAEELLNEMKER 398

Query: 299 KQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCF------KS 352
                   + ++I  YC++G I+KA      +S    +P+ +TY  L  G        K+
Sbjct: 399 GVPPDLCTFTTLIHGYCRDGNIEKALQFFDTISDQRLRPDIVTYNTLIDGMCRQGDLGKA 458

Query: 353 NLVEEGFKALELGMKLITTKKVRSS----------------------TPWLETTLSIIEI 390
           N + +   + E+    +T   +  S                       P + T  SII+ 
Sbjct: 459 NELWDDMHSREIFPNHVTYSILIDSHCEKGQVDNAFAFLDEMVNKGIVPNIMTYNSIIKG 518

Query: 391 FAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVK-AKINDP-NLLRRMILGGARPD 448
           +   G+V   +    +++          YNTLI  YVK  K+++  NLL+ M     +PD
Sbjct: 519 YCRSGNVSKGQQFLPKMRHDKVMPDLITYNTLIHGYVKEGKMHEAFNLLKIMENENVQPD 578

Query: 449 AETYSLL 455
           A TY+++
Sbjct: 579 AVTYNMI 585



 Score = 52.8 bits (125), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 49/227 (21%), Positives = 99/227 (43%), Gaps = 14/227 (6%)

Query: 234 NWSTLDVLIILYGYLAKGKDLERIWATVQE---LPNVRSKSYVLAIEAFGRIAQVSRAEE 290
           N  TL++++  Y    +  +++ + + +++    P+V + +  + ++A  R   V  A  
Sbjct: 158 NTYTLNIMVHSYCKTLQFGEVDTVISEMEKRCVFPDVVTHN--VMVDARFRAGDVEAAMA 215

Query: 291 LWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCF 350
           L   M S         YNSV+    +NG  DKA  + + M   G  P+  ++  L  G  
Sbjct: 216 LIDSMVSKGIKPGLVTYNSVLKGLLRNGRWDKAREVFRAMDACGVAPDVRSFNMLIGGFC 275

Query: 351 KSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKA 410
           ++  +EE        ++     + R  TP + +   +I +F  +G++ +A     E+++ 
Sbjct: 276 RAGELEE-------ALRFYKEMRGRRVTPDVVSFSCLIGLFTRRGEMDHAAEYLREMREF 328

Query: 411 NYTKYTFVYNTLIKAYVKAKINDPNLLRR--MILGGARPDAETYSLL 455
                  +Y  +I  + +A +    L  R  M+  G  PD  TY+ L
Sbjct: 329 GLMPDGVIYTMVIGGFCRAGLMLEALRVRDEMVAFGCLPDVVTYNTL 375



 Score = 49.3 bits (116), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 56/274 (20%), Positives = 109/274 (39%), Gaps = 23/274 (8%)

Query: 85  FCCIPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPG 144
           F C+P    + + YN L+     +  +  + E + +M+  G       F  LI      G
Sbjct: 363 FGCLP----DVVTYNTLLNGLCKERRLSDAEELLNEMKERGVPPDLCTFTTLIHGYCRDG 418

Query: 145 RRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYC 204
             +        +   ++ P + T++ L+       ++    +++ DM   E+ PN V+Y 
Sbjct: 419 NIEKALQFFDTISDQRLRPDIVTYNTLIDGMCRQGDLGKANELWDDMHSREIFPNHVTYS 478

Query: 205 ILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILY---GYLAKGKDLERIWATV 261
           IL  +H        A  +++ +       N  T + +I  Y   G ++KG+         
Sbjct: 479 ILIDSHCEKGQVDNAFAFLDEMVNKGIVPNIMTYNSIIKGYCRSGNVSKGQ--------- 529

Query: 262 QELPNVRSK-------SYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVY 314
           Q LP +R         +Y   I  + +  ++  A  L   M++         YN +IS +
Sbjct: 530 QFLPKMRHDKVMPDLITYNTLIHGYVKEGKMHEAFNLLKIMENENVQPDAVTYNMIISGF 589

Query: 315 CKNGFIDKASGLLKEMSMNGCKPNAITYRHLALG 348
             +G + +A  + K+M   G +P+  TY  +  G
Sbjct: 590 SVHGNMQEADWVYKKMGARGIEPDRYTYMSMING 623



 Score = 39.7 bits (91), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 27/120 (22%), Positives = 54/120 (45%)

Query: 94  NELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNIL 153
           N + YN+++      G +    +++ KMR        + +N LI      G+     N+L
Sbjct: 508 NIMTYNSIIKGYCRSGNVSKGQQFLPKMRHDKVMPDLITYNTLIHGYVKEGKMHEAFNLL 567

Query: 154 RQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVA 213
           + M+ + V P   T+++++   +   N++    VY  M    +EP+  +Y  +   H VA
Sbjct: 568 KIMENENVQPDAVTYNMIISGFSVHGNMQEADWVYKKMGARGIEPDRYTYMSMINGHVVA 627


>gi|326520694|dbj|BAJ92710.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 419

 Score = 79.0 bits (193), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 74/332 (22%), Positives = 140/332 (42%), Gaps = 15/332 (4%)

Query: 13  AFQSWMREGFPVHRGEIFHSINRLRKLQLNKRALEVMEWVIRERPYRPKELDYSYLLEFT 72
           A + W  EG      E+      L + +  K ALEV EW+         E DY   ++  
Sbjct: 84  ALEKWAGEGRAAPAPELRRIARDLSRARRYKHALEVAEWMKTHHESDLSENDYGVRIDLI 143

Query: 73  IKNHGISQGEKLFCCIPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLV 132
            K  G +  E  F  +P   ++   Y  L+ +     +I  +    ++M+     I  LV
Sbjct: 144 TKVFGANAAEDFFEKLPPAAKSLEAYTALLHSYARSKMIDKAERLFQRMKDADLPIDVLV 203

Query: 133 FNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMK 192
           +N ++ L  S G    +P +  ++K   V+P + T+++ +       ++E    +  +M 
Sbjct: 204 YNEMMTLYISVGELDKVPILAEELKRQNVSPDLFTYNLRISASVASMDLEAFKGILDEMS 263

Query: 193 RSEVEPNE----VSYCILATAHAVA-RLYTVAETYVEALEKSMTGNNWSTLDVLIILYGY 247
           +   +PN     + Y  LA+ +  A +L +   + VEA E  ++   W T D+L+IL+  
Sbjct: 264 K---DPNSNEGWMLYRNLASIYVDASQLVSSGNSLVEA-EAKISQREWITYDLLVILHAG 319

Query: 248 LAKGKDLERIWATVQ-ELPNVRSKSYVLAIEAF---GRIAQVSRAEELWLEMQSVKQLKA 303
           L     ++ IW ++Q     + S++YV  + A+   G++   +   + W +   V +   
Sbjct: 320 LGNLDRVKDIWKSMQMTAQRMTSRNYVCVLSAYLMCGQLKDAAGVVDQW-QRSKVPEFDV 378

Query: 304 TEQYNSVISVYCKNGFIDKASGLLKEMSMNGC 335
           +   N +       GF D A    + M    C
Sbjct: 379 S-ACNRLFDALLAAGFTDTADSFRELMLQKSC 409


>gi|307103654|gb|EFN51912.1| hypothetical protein CHLNCDRAFT_59068 [Chlorella variabilis]
          Length = 1025

 Score = 79.0 bits (193), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 68/281 (24%), Positives = 123/281 (43%), Gaps = 8/281 (2%)

Query: 152 ILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHA 211
           ++ +M++  +  +V T+  LM +    + ++  + VY  M      PN V+Y  L   + 
Sbjct: 217 LVAEMRSRGIQCNVHTYSALMNVCIKGNELDLALDVYRQMLAEGCTPNLVTYNTLIDVYG 276

Query: 212 VARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWA-TVQELPNVRSK 270
               +  A   ++ALE+        T + +II      + ++  RI+   +       + 
Sbjct: 277 KTGAWEEAIRVLDALERQGIDPEIRTYNTVIIACNMSGQAQEALRIYERMLAAGAQPTAT 336

Query: 271 SYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEM 330
           +Y   I A+G+  Q+ RA +++ +M      +    Y+S+IS   K G  + A  L +EM
Sbjct: 337 TYTALISAYGKNGQLDRALQIFQDMVRRGCERNVITYSSLISACEKAGRWELALELFREM 396

Query: 331 SMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEI 390
              GC+PN +TY  L   C +    E   KA E+  ++    + R   P   T   +I  
Sbjct: 397 HTEGCRPNVVTYNSLIAACAQGAQWE---KAQEMFEQM----QHRGCKPDAVTFGGLIAA 449

Query: 391 FAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKI 431
           +   G    A   FE++K  N    + VYNT++ A  K  +
Sbjct: 450 YDRAGHWRRALTAFEQMKAHNCRPDSVVYNTIVGALWKTGL 490



 Score = 56.2 bits (134), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 68/329 (20%), Positives = 135/329 (41%), Gaps = 45/329 (13%)

Query: 33  INRLRKLQLNKRALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQGEKLF------C 86
           I++    Q  +RALE++   +R R  +     YS L+   IK + +     ++       
Sbjct: 202 ISQCGTQQQLRRALELVA-EMRSRGIQCNVHTYSALMNVCIKGNELDLALDVYRQMLAEG 260

Query: 87  CIPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRR 146
           C P    N + YN L+      G  + ++  +  +   G       +N +II  +  G+ 
Sbjct: 261 CTP----NLVTYNTLIDVYGKTGAWEEAIRVLDALERQGIDPEIRTYNTVIIACNMSGQA 316

Query: 147 KTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCIL 206
           +    I  +M A    P  +T+  L+     +  ++  ++++ DM R   E N ++Y  L
Sbjct: 317 QEALRIYERMLAAGAQPTATTYTALISAYGKNGQLDRALQIFQDMVRRGCERNVITYSSL 376

Query: 207 ATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPN 266
                           + A EK+     W   ++ + L+          R   T    PN
Sbjct: 377 ----------------ISACEKA---GRW---ELALELF----------REMHTEGCRPN 404

Query: 267 VRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGL 326
           V + + ++A  A G  AQ  +A+E++ +MQ          +  +I+ Y + G   +A   
Sbjct: 405 VVTYNSLIAACAQG--AQWEKAQEMFEQMQHRGCKPDAVTFGGLIAAYDRAGHWRRALTA 462

Query: 327 LKEMSMNGCKPNAITYRHLALGCFKSNLV 355
            ++M  + C+P+++ Y  +    +K+ LV
Sbjct: 463 FEQMKAHNCRPDSVVYNTIVGALWKTGLV 491



 Score = 48.1 bits (113), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 48/181 (26%), Positives = 78/181 (43%), Gaps = 15/181 (8%)

Query: 283 AQVSRAEEL--WL----EMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCK 336
             V RA+EL  WL    +   +  L  T  Y ++IS       + +A  L+ EM   G +
Sbjct: 168 GHVRRAQELFDWLRGLDDSHDLYPLCNTMTYTTMISQCGTQQQLRRALELVAEMRSRGIQ 227

Query: 337 PNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGD 396
            N  TY  L   C K N        L+L + +         TP L T  ++I+++ + G 
Sbjct: 228 CNVHTYSALMNVCIKGN-------ELDLALDVYRQMLAEGCTPNLVTYNTLIDVYGKTGA 280

Query: 397 VGNAENLFEELKKANYTKYTFVYNTLIKAY-VKAKINDP-NLLRRMILGGARPDAETYSL 454
              A  + + L++         YNT+I A  +  +  +   +  RM+  GA+P A TY+ 
Sbjct: 281 WEEAIRVLDALERQGIDPEIRTYNTVIIACNMSGQAQEALRIYERMLAAGAQPTATTYTA 340

Query: 455 L 455
           L
Sbjct: 341 L 341


>gi|242035429|ref|XP_002465109.1| hypothetical protein SORBIDRAFT_01g032160 [Sorghum bicolor]
 gi|241918963|gb|EER92107.1| hypothetical protein SORBIDRAFT_01g032160 [Sorghum bicolor]
          Length = 1153

 Score = 79.0 bits (193), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 81/364 (22%), Positives = 138/364 (37%), Gaps = 41/364 (11%)

Query: 121 MRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHN 180
           MR  G S++   +N LI      G       + + M  D ++P V T+ +LM       +
Sbjct: 169 MREAGMSLNGYTYNGLIYFLVKSGFDAEAMEVYKAMVEDGISPSVRTYSVLMVSFGKKRD 228

Query: 181 IEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDV 240
           ++ ++ + ++M+   V+PN  SY I       A  +  A   +  +E S    +  T  V
Sbjct: 229 VDTVLWLLNEMEARGVKPNVYSYTICIRVLGQAARFDEAYQILGKMEDSGCKPDVVTHTV 288

Query: 241 LIILY---GYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQS 297
           +I +    G L+  KD+   W            +Y+  ++  G         E+W  M +
Sbjct: 289 VIQVLCDAGRLSDAKDV--FWKMKASDQKPDRVTYITLLDKCGDSGDSQSVMEIWNAMVA 346

Query: 298 VKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEE 357
                    Y +V+   C+ G +D+A  +  EM   G  P   +Y  L  G  K+++ + 
Sbjct: 347 DGYNDNIVSYTAVVDALCQVGRLDEALAVFDEMKEKGISPEQYSYNSLISGFLKADMFD- 405

Query: 358 GFKALEL--------------------------GMKLITTK-----KVRSSTPWLETTLS 386
             +ALEL                          G  L   +     K +   P +    +
Sbjct: 406 --RALELFNHMNACGPSPNGYTHVLFINYYGKSGQSLKAIQRYEHMKSKGIVPDVAAANA 463

Query: 387 IIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKINDP--NLLRRMILGG 444
           ++   A  G +G A+ +F ELK    +  T  Y  +IK   KA   D   N    M+  G
Sbjct: 464 VLSSLARSGRLGMAKRVFYELKDMGVSPDTITYTMMIKCCSKASKADEAMNFFSDMVETG 523

Query: 445 ARPD 448
             PD
Sbjct: 524 CVPD 527



 Score = 62.8 bits (151), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 67/313 (21%), Positives = 125/313 (39%), Gaps = 23/313 (7%)

Query: 89  PKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKT 148
           P+ Y     YN+L+   L   +   +LE    M   G S +   +  ++ +N      ++
Sbjct: 386 PEQYS----YNSLISGFLKADMFDRALELFNHMNACGPSPNG--YTHVLFINYYGKSGQS 439

Query: 149 IPNILR--QMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCIL 206
           +  I R   MK+  + P V+  + ++   A    +    +V+ ++K   V P+ ++Y ++
Sbjct: 440 LKAIQRYEHMKSKGIVPDVAAANAVLSSLARSGRLGMAKRVFYELKDMGVSPDTITYTMM 499

Query: 207 ATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPN 266
               + A     A  +   + ++    +   L+ LI     L KG      W    +L  
Sbjct: 500 IKCCSKASKADEAMNFFSDMVETGCVPDVLALNSLI---DTLYKGGKGNEAWKLFHQLKE 556

Query: 267 VR----SKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDK 322
           ++    + +Y   +   GR  +V     L  EM           YN+V+    KNG ++ 
Sbjct: 557 MKIEPTNGTYNTLLSGLGREGKVKEVMHLLEEMTHSIHPPNLITYNTVLDCLSKNGEVNC 616

Query: 323 ASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLE 382
           A G+L  M+  GC P+  +Y  +  G  K    EE F+           KK+ +  P   
Sbjct: 617 AIGMLYSMTEKGCTPDLSSYNTVMYGLIKEERFEEAFRM------FCQMKKILA--PDYA 668

Query: 383 TTLSIIEIFAEKG 395
           T  +I+  F + G
Sbjct: 669 TLCTILPSFVKNG 681



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 69/315 (21%), Positives = 129/315 (40%), Gaps = 16/315 (5%)

Query: 116 EYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIE 175
           + + KM   G     +    +I +    GR     ++  +MKA    P   T+  L+   
Sbjct: 269 QILGKMEDSGCKPDVVTHTVVIQVLCDAGRLSDAKDVFWKMKASDQKPDRVTYITLLDKC 328

Query: 176 ANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHA-VARLYTVAETYVEALEKSMTGNN 234
            +  + + +M++++ M       N VSY  +  A   V RL      + E  EK ++   
Sbjct: 329 GDSGDSQSVMEIWNAMVADGYNDNIVSYTAVVDALCQVGRLDEALAVFDEMKEKGISPEQ 388

Query: 235 WSTLDVLIILYGYLAKGKDLERIWATVQEL----PNVRSKSYVLAIEAFGRIAQVSRAEE 290
           +S      ++ G+L K    +R       +    P+    ++VL I  +G+  Q  +A +
Sbjct: 389 YSYNS---LISGFL-KADMFDRALELFNHMNACGPSPNGYTHVLFINYYGKSGQSLKAIQ 444

Query: 291 LWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCF 350
            +  M+S   +      N+V+S   ++G +  A  +  E+   G  P+ ITY  +   C 
Sbjct: 445 RYEHMKSKGIVPDVAAANAVLSSLARSGRLGMAKRVFYELKDMGVSPDTITYTMMIKCCS 504

Query: 351 KSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKA 410
           K++  +E   A+     ++ T  V    P +    S+I+   + G    A  LF +LK+ 
Sbjct: 505 KASKADE---AMNFFSDMVETGCV----PDVLALNSLIDTLYKGGKGNEAWKLFHQLKEM 557

Query: 411 NYTKYTFVYNTLIKA 425
                   YNTL+  
Sbjct: 558 KIEPTNGTYNTLLSG 572



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 88/409 (21%), Positives = 168/409 (41%), Gaps = 37/409 (9%)

Query: 36   LRKLQLNKRALEVMEWV--IRERPYRPKELDYSYLLEFTIKNHGISQGEKLFC------C 87
            +R L  +K+ALE  +     +      K   Y+ L+   +  + I   E LF       C
Sbjct: 745  IRHLCKHKKALEAHQLFNKFKGLGVSLKTGSYNSLIRGLVDENLIDIAEDLFTEMKRLGC 804

Query: 88   IPKDYQNELLYNNLVIACLDKGV-IKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRR 146
             P    +E  YN L++  + K + I+  L    +M   G+  +Y+ +N +I       R 
Sbjct: 805  GP----DEFTYN-LILDAMGKSMRIEEMLRVQAEMHRKGYESTYVTYNTIISGLVKSKRL 859

Query: 147  KTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCIL 206
            +   ++   + ++  +P   T+  L+        +     ++++M     +PN   Y IL
Sbjct: 860  EQAIDLYYNLMSEGFSPTPCTYGPLLDGLLKAGKMVDAENLFNEMLEYGCKPNCTIYNIL 919

Query: 207  ATAHAVA-RLYTVAETYVEALEKSMTGN--NWSTLDVLIILYGYLAKGKDLERIWATVQE 263
               H +A     V + + + +E+ +  +  +++ L   +   G L  G    R    +  
Sbjct: 920  LNGHRIAGNTENVCQIFEKMVEQGINPDIKSYTVLIDTLCTAGRLNDGLSYFRQLLELGL 979

Query: 264  LPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKA 323
             P++    Y L I+  G+  ++  A  L+ EM+    +     YNS+I    K G   +A
Sbjct: 980  EPDL--IIYNLLIDGLGKSERIEEAVCLFNEMKKKGIVPNLYTYNSLILHLGKAGKASEA 1037

Query: 324  SGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALE---LGMKLITTKKVRSSTPW 380
            + + +E+ + G KPN  TY  L  G   S   +  + A +   +G+ L T          
Sbjct: 1038 AQMYEELLIKGWKPNVFTYNALIRGYSVSGSTDNAYAAYDCVAVGVSLKT---------- 1087

Query: 381  LETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKA 429
                 ++I    ++  +  AE LF E+K+       F YN ++ A  K+
Sbjct: 1088 -----ALISGLVDENLINIAEGLFAEMKRRGCGPDQFTYNLILDAIGKS 1131



 Score = 38.9 bits (89), Expect = 6.1,   Method: Compositional matrix adjust.
 Identities = 54/257 (21%), Positives = 92/257 (35%), Gaps = 43/257 (16%)

Query: 144  GRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSY 203
            G+     N+  +M      P+ + ++IL+       N E + +++  M    + P+  SY
Sbjct: 892  GKMVDAENLFNEMLEYGCKPNCTIYNILLNGHRIAGNTENVCQIFEKMVEQGINPDIKSY 951

Query: 204  CIL-ATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQ 262
             +L  T     RL      + + LE  +  +    L +  +L   L K + +E       
Sbjct: 952  TVLIDTLCTAGRLNDGLSYFRQLLELGLEPD----LIIYNLLIDGLGKSERIEEAVCLFN 1007

Query: 263  EL------PNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCK 316
            E+      PN+ +  Y   I   G+  + S A +++ E+           YN++I  Y  
Sbjct: 1008 EMKKKGIVPNLYT--YNSLILHLGKAGKASEAAQMYEELLIKGWKPNVFTYNALIRGYSV 1065

Query: 317  NGFIDKA------------------------------SGLLKEMSMNGCKPNAITYRHLA 346
            +G  D A                               GL  EM   GC P+  TY  + 
Sbjct: 1066 SGSTDNAYAAYDCVAVGVSLKTALISGLVDENLINIAEGLFAEMKRRGCGPDQFTYNLIL 1125

Query: 347  LGCFKSNLVEEGFKALE 363
                KS  +EE  K  E
Sbjct: 1126 DAIGKSMRIEEMLKVQE 1142


>gi|242048026|ref|XP_002461759.1| hypothetical protein SORBIDRAFT_02g007610 [Sorghum bicolor]
 gi|241925136|gb|EER98280.1| hypothetical protein SORBIDRAFT_02g007610 [Sorghum bicolor]
          Length = 896

 Score = 79.0 bits (193), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 71/340 (20%), Positives = 151/340 (44%), Gaps = 15/340 (4%)

Query: 114 SLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMK 173
           +LE +++M+ +G+ +   +F  L+   +  GR +    ++ ++K   + P +  +++ + 
Sbjct: 201 ALELLRQMQEVGYEVGVPLFTTLVRALAREGRVEGALALVDEVKGSCLEPDIVLYNVCID 260

Query: 174 IEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGN 233
                 N++   K + ++K   ++P++VSY  +      A   + AE     +E      
Sbjct: 261 CFGKAGNVDMAWKFFHELKSQGLKPDDVSYTSMIWVLCKAGRLSEAEELFGQMETERAVP 320

Query: 234 NWSTLDVLIILYGYLAKGKDLERIWATVQE---LPNVRSKSYVLAIEAFGRIAQVSRAEE 290
                + +I+ YG   + ++  ++   ++E   +P+V S + +L     G+  +V  A  
Sbjct: 321 CAYAYNTMIMGYGSAGQFENAYKLLDQLKERGCIPSVVSFNSILT--CLGKKRKVDEALT 378

Query: 291 LWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCF 350
           L+  M+   +  ++  YN +I + C  G +++A  +  EM   G  PN +T   +     
Sbjct: 379 LFEAMKKDAEPNSS-TYNIIIDMLCMAGKVEEAYMIRDEMEHAGLFPNLLTVNIMVDRLC 437

Query: 351 KSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKA 410
           K+   E  ++  E       T   R   P   T  S+I+   +KG+V +A  LFE +   
Sbjct: 438 KAKKFEPAYEMFE-------TASQRGCNPNSVTYCSLIDGLGKKGNVDDAYRLFENMLDT 490

Query: 411 NYTKYTFVYNTLIKAYV--KAKINDPNLLRRMILGGARPD 448
            +     VY +LI+ +     K +   + + M   G +PD
Sbjct: 491 GHNANPVVYTSLIRNFFMHGRKEDGHKIFKEMNRRGCQPD 530



 Score = 65.1 bits (157), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 84/375 (22%), Positives = 156/375 (41%), Gaps = 30/375 (8%)

Query: 94  NELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNIL 153
           N + Y +L+     KG +  +    + M   GH+ + +V+  LI      GR++    I 
Sbjct: 460 NSVTYCSLIDGLGKKGNVDDAYRLFENMLDTGHNANPVVYTSLIRNFFMHGRKEDGHKIF 519

Query: 154 RQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVA 213
           ++M      P ++  +  M       ++E    ++ D+K     P+  SY IL   H + 
Sbjct: 520 KEMNRRGCQPDLTLLNTYMDCVFKAGDVEKGRAIFEDIKGYGFLPDVRSYSIL--IHGLT 577

Query: 214 RLYTVAETYVEALEKSMTGNNWSTLDVL---IILYGYLAKGKDLERIWATVQELPNVRSK 270
           +     ET   ++  +M    ++ LD      ++ G+   GK L++ +  ++E+   + K
Sbjct: 578 KAGQARET--SSIFHAMKQQGFA-LDARAYNAVVDGFCKSGK-LDKAYEVLEEM---KVK 630

Query: 271 SYVLAIEAFGRI----AQVSRAEELWLEMQSVKQLKATE----QYNSVISVYCKNGFIDK 322
                +  +G I    A++ R +E ++  +  K  K  E     Y+S+I  + K G ID+
Sbjct: 631 RVPPTVATYGSIIDGLAKIDRLDEAYMLFEEAKS-KGIELNVIVYSSLIDGFGKVGRIDE 689

Query: 323 ASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLE 382
           A  +L+EM   G  PN  T+  L     K+  + E     +      + K+++ S P   
Sbjct: 690 AYLILEEMMKKGLTPNVYTWNSLMDALVKAEEINEALICFQ------SMKEMKCS-PNTY 742

Query: 383 TTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVK-AKINDP-NLLRRM 440
           T   +I           A   ++E++K         Y T+I    K   I D  +L  R 
Sbjct: 743 TYSILINGLCRVQKYNKAFVFWQEMQKQGLVPNVVTYTTMIAGLAKVGNITDACSLFERF 802

Query: 441 ILGGARPDAETYSLL 455
              G  PDA +++ L
Sbjct: 803 KANGGTPDAASFNAL 817



 Score = 61.6 bits (148), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 74/344 (21%), Positives = 135/344 (39%), Gaps = 17/344 (4%)

Query: 118 MKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEAN 177
           +++M VLG+ +       L+       R      ++  M+  K  P  S + +L+   A 
Sbjct: 135 LEEMSVLGYGVPNPACADLVSALVRTRRLDDAERVIAAMRRLKFRPAFSAYTVLIGAMAE 194

Query: 178 DHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWST 237
               E  +++   M+    E     +  L  A A       A   V+ ++ S    +   
Sbjct: 195 ARQPERALELLRQMQEVGYEVGVPLFTTLVRALAREGRVEGALALVDEVKGSCLEPDIVL 254

Query: 238 LDVLIILYGYLAKGKDLERIWATVQELPNVRSK----SYVLAIEAFGRIAQVSRAEELWL 293
            +V I  +G   K  +++  W    EL +   K    SY   I    +  ++S AEEL+ 
Sbjct: 255 YNVCIDCFG---KAGNVDMAWKFFHELKSQGLKPDDVSYTSMIWVLCKAGRLSEAEELFG 311

Query: 294 EMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSN 353
           +M++ + +     YN++I  Y   G  + A  LL ++   GC P+ +++  +     K  
Sbjct: 312 QMETERAVPCAYAYNTMIMGYGSAGQFENAYKLLDQLKERGCIPSVVSFNSILTCLGKKR 371

Query: 354 LVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYT 413
            V+E     E  MK       + + P   T   II++    G V  A  + +E++ A   
Sbjct: 372 KVDEALTLFE-AMK-------KDAEPNSSTYNIIIDMLCMAGKVEEAYMIRDEMEHAGLF 423

Query: 414 KYTFVYNTLIKAYVKAKINDP--NLLRRMILGGARPDAETYSLL 455
                 N ++    KAK  +P   +       G  P++ TY  L
Sbjct: 424 PNLLTVNIMVDRLCKAKKFEPAYEMFETASQRGCNPNSVTYCSL 467



 Score = 58.5 bits (140), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 56/276 (20%), Positives = 113/276 (40%), Gaps = 19/276 (6%)

Query: 98  YNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMK 157
           Y+ L+      G  + +      M+  G ++    +N ++      G+      +L +MK
Sbjct: 569 YSILIHGLTKAGQARETSSIFHAMKQQGFALDARAYNAVVDGFCKSGKLDKAYEVLEEMK 628

Query: 158 ADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYT 217
             +V P V+T+  ++   A    ++    ++ + K   +E N + Y  L       ++  
Sbjct: 629 VKRVPPTVATYGSIIDGLAKIDRLDEAYMLFEEAKSKGIELNVIVYSSLI--DGFGKVGR 686

Query: 218 VAETYV---EALEKSMTGN--NWSTL-DVLIILYGYLAKGKDLERIWATVQELPNVRSK- 270
           + E Y+   E ++K +T N   W++L D L+       K +++       Q +  ++   
Sbjct: 687 IDEAYLILEEMMKKGLTPNVYTWNSLMDALV-------KAEEINEALICFQSMKEMKCSP 739

Query: 271 ---SYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLL 327
              +Y + I    R+ + ++A   W EMQ    +     Y ++I+   K G I  A  L 
Sbjct: 740 NTYTYSILINGLCRVQKYNKAFVFWQEMQKQGLVPNVVTYTTMIAGLAKVGNITDACSLF 799

Query: 328 KEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALE 363
           +    NG  P+A ++  L  G   +N   E +   E
Sbjct: 800 ERFKANGGTPDAASFNALIEGMSHANRAIEAYHVFE 835



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 77/401 (19%), Positives = 148/401 (36%), Gaps = 49/401 (12%)

Query: 93  QNELLYNNLVIACLDK-GVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPN 151
           + +++  N+ I C  K G + ++ ++  +++  G     + +  +I +    GR      
Sbjct: 249 EPDIVLYNVCIDCFGKAGNVDMAWKFFHELKSQGLKPDDVSYTSMIWVLCKAGRLSEAEE 308

Query: 152 ILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHA 211
           +  QM+ ++  P    ++ ++    +    E   K+   +K     P+ VS+  + T   
Sbjct: 309 LFGQMETERAVPCAYAYNTMIMGYGSAGQFENAYKLLDQLKERGCIPSVVSFNSILTCLG 368

Query: 212 VARLYTVAETYVEALEKSMTGNNWSTLDVLI----------------------------- 242
             R    A T  EA++K    N+ ST +++I                             
Sbjct: 369 KKRKVDEALTLFEAMKKDAEPNS-STYNIIIDMLCMAGKVEEAYMIRDEMEHAGLFPNLL 427

Query: 243 ---ILYGYLAKGKDLERIW----ATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEM 295
              I+   L K K  E  +       Q   N  S +Y   I+  G+   V  A  L+  M
Sbjct: 428 TVNIMVDRLCKAKKFEPAYEMFETASQRGCNPNSVTYCSLIDGLGKKGNVDDAYRLFENM 487

Query: 296 QSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGC-FKSNL 354
                      Y S+I  +  +G  +    + KEM+  GC+P+ +T  +  + C FK+  
Sbjct: 488 LDTGHNANPVVYTSLIRNFFMHGRKEDGHKIFKEMNRRGCQPD-LTLLNTYMDCVFKAGD 546

Query: 355 VEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTK 414
           VE+G    E         K     P + +   +I    + G      ++F  +K+  +  
Sbjct: 547 VEKGRAIFE-------DIKGYGFLPDVRSYSILIHGLTKAGQARETSSIFHAMKQQGFAL 599

Query: 415 YTFVYNTLIKAYVKAKINDP--NLLRRMILGGARPDAETYS 453
               YN ++  + K+   D    +L  M +    P   TY 
Sbjct: 600 DARAYNAVVDGFCKSGKLDKAYEVLEEMKVKRVPPTVATYG 640


>gi|449461475|ref|XP_004148467.1| PREDICTED: pentatricopeptide repeat-containing protein At3g54980,
           mitochondrial-like [Cucumis sativus]
          Length = 775

 Score = 79.0 bits (193), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 80/372 (21%), Positives = 160/372 (43%), Gaps = 25/372 (6%)

Query: 94  NELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNIL 153
           N++ Y+ L+  C   G I+ + E+  +M+  G   S    N ++         +    + 
Sbjct: 297 NKVTYSVLIDGCCKNGNIEKAFEFYSEMKTKGIRSSVYSLNSILEGYLKCQSWQNAFTMF 356

Query: 154 RQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHA-V 212
                  +A +V TF+ L+     +  +     ++ ++    + PN VSY  +   H   
Sbjct: 357 NDALESGLA-NVFTFNTLLSWLCKEGKMNEACNLWDEVIAKGISPNVVSYNNIILGHCRK 415

Query: 213 ARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVR---- 268
             +    + Y E L+   T N    +   I++ GY  KG D+E  ++    + +      
Sbjct: 416 DNINAACKVYKEMLDNGFTPN---AVTFTILMDGYFKKG-DIENAFSIFHRMKDANILPT 471

Query: 269 SKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLK 328
             +  + I+   +  +     +L+ +  S   +     YN++I  + K G I+ AS + +
Sbjct: 472 DTTLGIIIKGLCKAGRSFEGRDLFNKFVSQGFVPTCMPYNTIIDGFIKEGNINLASNVYR 531

Query: 329 EMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSII 388
           EM   G  P+ +TY  L  G  K N        ++L +KL+   K +     ++   ++I
Sbjct: 532 EMCEVGITPSTVTYTSLIDGFCKGN-------NIDLALKLLNDMKRKGLKMDIKAYGTLI 584

Query: 389 EIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAY-----VKAKINDPNLLRRMILG 443
           + F ++ D+ +A  L  EL+ A  +   F+YN++I  +     V+  I   +L ++M+  
Sbjct: 585 DGFCKRRDMKSAHELLNELRGAGLSPNRFIYNSMITGFKNMNNVEEAI---DLYKKMVNE 641

Query: 444 GARPDAETYSLL 455
           G   D +TY+ L
Sbjct: 642 GIPCDLKTYTSL 653



 Score = 68.6 bits (166), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 81/364 (22%), Positives = 148/364 (40%), Gaps = 46/364 (12%)

Query: 95  ELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILR 154
           E  + +++ AC+ +G +  +L     M   G S++  V   L+      G  ++   ++ 
Sbjct: 228 EGTFTSVITACVKEGNVAEALRLKDDMVNCGKSMNLAVATSLMKGYCMQGNLRSALVLVN 287

Query: 155 QMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVAR 214
           ++    + P+  T+ +L+     + NIE   + YS+MK   +              +V  
Sbjct: 288 EISESGLVPNKVTYSVLIDGCCKNGNIEKAFEFYSEMKTKGIRS------------SVYS 335

Query: 215 LYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSKSYVL 274
           L ++ E Y++         +W   +   +    L  G            L NV + + +L
Sbjct: 336 LNSILEGYLKC-------QSWQ--NAFTMFNDALESG------------LANVFTFNTLL 374

Query: 275 AIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNG 334
           +     +  +++ A  LW E+ +         YN++I  +C+   I+ A  + KEM  NG
Sbjct: 375 S--WLCKEGKMNEACNLWDEVIAKGISPNVVSYNNIILGHCRKDNINAACKVYKEMLDNG 432

Query: 335 CKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLS-IIEIFAE 393
             PNA+T+  L  G FK   +E  F         I  +   ++    +TTL  II+   +
Sbjct: 433 FTPNAVTFTILMDGYFKKGDIENAFS--------IFHRMKDANILPTDTTLGIIIKGLCK 484

Query: 394 KGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVK-AKIN-DPNLLRRMILGGARPDAET 451
            G      +LF +     +      YNT+I  ++K   IN   N+ R M   G  P   T
Sbjct: 485 AGRSFEGRDLFNKFVSQGFVPTCMPYNTIIDGFIKEGNINLASNVYREMCEVGITPSTVT 544

Query: 452 YSLL 455
           Y+ L
Sbjct: 545 YTSL 548



 Score = 59.7 bits (143), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 100/498 (20%), Positives = 184/498 (36%), Gaps = 95/498 (19%)

Query: 39  LQLNKRALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQGEKLFCCIPKDYQNELLY 98
           +Q N R+  V+   I E    P ++ YS L++   KN  I +  + +  +        +Y
Sbjct: 275 MQGNLRSALVLVNEISESGLVPNKVTYSVLIDGCCKNGNIEKAFEFYSEMKTKGIRSSVY 334

Query: 99  NNLVIACLDKGVIKLSLEYMKKMRVLGHSI-----SYLVFNRLIILNSSPGRRKTIPNIL 153
           +   +  + +G +K    +     +   ++     +   FN L+      G+     N+ 
Sbjct: 335 S---LNSILEGYLKCQ-SWQNAFTMFNDALESGLANVFTFNTLLSWLCKEGKMNEACNLW 390

Query: 154 RQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVA 213
            ++ A  ++P+V +++ ++       NI    KVY +M  +   PN V++ IL   +   
Sbjct: 391 DEVIAKGISPNVVSYNNIILGHCRKDNINAACKVYKEMLDNGFTPNAVTFTILMDGYFKK 450

Query: 214 RLYTVAETYVEALEKSMTGNNWSTLDVLI---ILYGYLAKGKDLERIWATVQELPNVRSK 270
                A +    ++ +      +TL ++I      G   +G+DL   + +   +P     
Sbjct: 451 GDIENAFSIFHRMKDANILPTDTTLGIIIKGLCKAGRSFEGRDLFNKFVSQGFVPTCMP- 509

Query: 271 SYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEM 330
            Y   I+ F +   ++ A  ++ EM  V    +T  Y S+I  +CK   ID A  LL +M
Sbjct: 510 -YNTIIDGFIKEGNINLASNVYREMCEVGITPSTVTYTSLIDGFCKGNNIDLALKLLNDM 568

Query: 331 SMNG---------------CK--------------------PNAITYRHLALGCFKSNLV 355
              G               CK                    PN   Y  +  G    N V
Sbjct: 569 KRKGLKMDIKAYGTLIDGFCKRRDMKSAHELLNELRGAGLSPNRFIYNSMITGFKNMNNV 628

Query: 356 EEGFKALELGMKLITTK---KVRSSTPWLETTLS-------------------------- 386
           EE   A++L  K++       +++ T  ++  L                           
Sbjct: 629 EE---AIDLYKKMVNEGIPCDLKTYTSLIDGLLKSGRLLYASDIHTEMLSKGILPDDRAH 685

Query: 387 --IIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKA-------KINDPNLL 437
             +I     KG   NA  + E++   N      +YNTLI  + K        +++D  L 
Sbjct: 686 TVLINGLCNKGQFENARKILEDMNGKNMIPSVLIYNTLIAGHFKEGNLQEAFRLHDEMLD 745

Query: 438 RRMILGGARPDAETYSLL 455
           R ++     PD  TY +L
Sbjct: 746 RGLV-----PDNITYDIL 758



 Score = 39.7 bits (91), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 68/342 (19%), Positives = 126/342 (36%), Gaps = 48/342 (14%)

Query: 55  ERPYRPKELDYSYLLEFTIKNHGISQGEKLFCCIPKDYQNELLYNNLVIACLDKGVIKLS 114
           +  + P  + ++ L++   K   I   E  F    +     +L  +  +  + KG+ K  
Sbjct: 430 DNGFTPNAVTFTILMDGYFKKGDI---ENAFSIFHRMKDANILPTDTTLGIIIKGLCKAG 486

Query: 115 LEY-----MKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFH 169
             +       K    G   + + +N +I      G      N+ R+M    + P   T+ 
Sbjct: 487 RSFEGRDLFNKFVSQGFVPTCMPYNTIIDGFIKEGNINLASNVYREMCEVGITPSTVTYT 546

Query: 170 ILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKS 229
            L+      +NI+  +K+ +DMKR  ++ +  +Y  L       R    A   +  L  +
Sbjct: 547 SLIDGFCKGNNIDLALKLLNDMKRKGLKMDIKAYGTLIDGFCKRRDMKSAHELLNELRGA 606

Query: 230 ------------MTG-NNWSTLDVLIILY--------------------GYLAKGK---- 252
                       +TG  N + ++  I LY                    G L  G+    
Sbjct: 607 GLSPNRFIYNSMITGFKNMNNVEEAIDLYKKMVNEGIPCDLKTYTSLIDGLLKSGRLLYA 666

Query: 253 -DLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVI 311
            D+     +   LP+ R+  + + I       Q   A ++  +M     + +   YN++I
Sbjct: 667 SDIHTEMLSKGILPDDRA--HTVLINGLCNKGQFENARKILEDMNGKNMIPSVLIYNTLI 724

Query: 312 SVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSN 353
           + + K G + +A  L  EM   G  P+ ITY  L  G FK +
Sbjct: 725 AGHFKEGNLQEAFRLHDEMLDRGLVPDNITYDILVNGKFKGD 766


>gi|5454208|gb|AAD43623.1|AC005698_22 T3P18.22 [Arabidopsis thaliana]
          Length = 425

 Score = 79.0 bits (193), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 82/365 (22%), Positives = 156/365 (42%), Gaps = 14/365 (3%)

Query: 96  LLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQ 155
           L+YN ++        +  +L   K+M   G   + + ++ LI    + GR      +L  
Sbjct: 52  LIYNTIIDGLCKYKHMDDALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSD 111

Query: 156 MKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARL 215
           M   K+ P V TF  L+     +  +    K+Y +M +  ++P+ V+Y  L     +   
Sbjct: 112 MIERKINPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDR 171

Query: 216 YTVAETYVEALEKSMTGNNWSTLDVLI---ILYGYLAKGKDLERIWATVQELPNVRSKSY 272
              A+   E +       +  T + LI     Y  + +G ++ R  +    + N  + +Y
Sbjct: 172 LDEAKQMFEFMVSKHCFPDVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGN--TVTY 229

Query: 273 VLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSM 332
            + I+   +      A+E++ EM S         YN+++   CKNG ++KA  + + +  
Sbjct: 230 NILIQGLFQAGDCDMAQEIFKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQR 289

Query: 333 NGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFA 392
           +  +P   TY  +  G  K+  VE+G+        L     ++   P +    ++I  F 
Sbjct: 290 SKMEPTIYTYNIMIEGMCKAGKVEDGWD-------LFCNLSLKGVKPDVVAYNTMISGFC 342

Query: 393 EKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKINDPN--LLRRMILGGARPDAE 450
            KG    A+ LF+E+K+      +  YNTLI+A ++    + +  L++ M   G   DA 
Sbjct: 343 RKGSKEEADALFKEMKEDGTLPNSGCYNTLIRARLRDGDREASAELIKEMRSCGFAGDAS 402

Query: 451 TYSLL 455
           T  L+
Sbjct: 403 TIGLV 407



 Score = 42.7 bits (99), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 28/92 (30%), Positives = 41/92 (44%), Gaps = 2/92 (2%)

Query: 366 MKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKA 425
           M LI     +   P L T   ++    ++GD   A NL  ++++        +YNT+I  
Sbjct: 1   MALIDRMVAKGCQPDLVTYGVVVNGLCKRGDTDLAFNLLNKMEQGKLEPGVLIYNTIIDG 60

Query: 426 YVKAKINDP--NLLRRMILGGARPDAETYSLL 455
             K K  D   NL + M   G RP+  TYS L
Sbjct: 61  LCKYKHMDDALNLFKEMETKGIRPNVVTYSSL 92


>gi|224123734|ref|XP_002330195.1| predicted protein [Populus trichocarpa]
 gi|222871651|gb|EEF08782.1| predicted protein [Populus trichocarpa]
          Length = 529

 Score = 79.0 bits (193), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 89/369 (24%), Positives = 160/369 (43%), Gaps = 24/369 (6%)

Query: 100 NLVIACLDK-GVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTI---PNILRQ 155
           N+V+  L K G +  + + ++ M+V G S + + +N LI      GR   +     IL++
Sbjct: 159 NIVVNGLCKVGKLNRAGDVIEDMKVWGVSPNVITYNTLIDGYCKMGRIGKMYKADAILKE 218

Query: 156 MKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARL 215
           M A  + P+  T++IL+     D N+ G M+V+ +M+R  + PN V+Y IL         
Sbjct: 219 MVAKGICPNEVTYNILIDGFCKDENVSGAMRVFGEMQRQGLRPNVVTYNILINGLCSDGK 278

Query: 216 YTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQEL------PNVRS 269
              A    + +  S    N  T +VLI       K K +        ++      PN  +
Sbjct: 279 VDEAVALRDQMVSSDLEPNVVTHNVLI---NGFCKNKTVNEAINLFNDMEKQGVDPN--A 333

Query: 270 KSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKE 329
            +Y   I+A+ +  ++  A  L+  M           YN +I+  C+ G +  A  L+ E
Sbjct: 334 MTYTTLIDAYCKDGRMEDAFALYNMMIDRGIFPEVSTYNCLIAGLCRKGDVKAARSLMNE 393

Query: 330 MSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIE 389
           M       + +TY  L     K     E  KA+    KL+     +   P   T  ++++
Sbjct: 394 MVSKKLSADVVTYNILIDSLCKKG---ESRKAV----KLLDEMFEKGLNPSHVTYNTLMD 446

Query: 390 IFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAY-VKAKINDPN-LLRRMILGGARP 447
            +  +G++  A  +   +++         +N LIK + +K ++ D N LL  M+  G  P
Sbjct: 447 GYCREGNLRAALIVRTRMERKGKQANVVTHNVLIKGFCLKGRLEDANGLLNEMLERGLVP 506

Query: 448 DAETYSLLK 456
           +  TY ++K
Sbjct: 507 NRTTYEIIK 515


>gi|354726093|emb|CCD31439.1| RNA processing factor 3 [Arabidopsis thaliana]
          Length = 629

 Score = 79.0 bits (193), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 102/439 (23%), Positives = 187/439 (42%), Gaps = 43/439 (9%)

Query: 55  ERPYRPKELDYSYLLEFTIKNHGISQGEKLFC-CIPKDYQNELL-YNNLVIACLDKGVIK 112
           E  Y+P  + ++ L+     ++  S+   L    + +  Q +L+ Y  +V     +G I 
Sbjct: 178 EMGYKPDTVTFNTLIHGLFLHNKASEAVALVDQMVQRGCQPDLVTYGAVVNGLCKRGDID 237

Query: 113 LSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPN---ILRQMKADKVAPHVSTFH 169
           L+L  +KKM         +++N +I       + K I +   +  +M+   + P V T++
Sbjct: 238 LALSLLKKMEKGKIEADVVIYNTII---DGLCKYKHIDDAFALFNKMETKGIRPDVFTYN 294

Query: 170 ILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAV-ARLYTVAETYVEALEK 228
            L+    N        ++ S+M   ++ PN V++  L  A     +L    + Y E +++
Sbjct: 295 SLISCLCNYGRWSDASRLLSNMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKR 354

Query: 229 SMTGN--NWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVS 286
           S+  +   +S+L     ++  L + K +  +  +    PNV +  Y   I+ F +  +V 
Sbjct: 355 SIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVT--YNTLIKGFCKAKRVE 412

Query: 287 RAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLA 346
              EL+ EM     +  T  YN++I    + G  D A  + K+M  +G  P+ ITY  L 
Sbjct: 413 EGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSILL 472

Query: 347 LG-C------------------------FKSNLVEEGF-KA--LELGMKLITTKKVRSST 378
            G C                        +  N++ EG  KA  +E G  L  +  ++   
Sbjct: 473 DGLCKYGKLEKALVVFEYLQKSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVK 532

Query: 379 PWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVK--AKINDPNL 436
           P +    ++I  F  KG    A+ LF E+K+      +  YNTLI+A ++   K     L
Sbjct: 533 PNVIIYTTMISGFCRKGLKEEADALFREMKEDGTLPDSGCYNTLIRARLRDGDKAASAEL 592

Query: 437 LRRMILGGARPDAETYSLL 455
           ++ M   G   DA T S++
Sbjct: 593 IKEMRSCGFVGDASTISMV 611



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 57/218 (26%), Positives = 98/218 (44%), Gaps = 13/218 (5%)

Query: 244 LYGYLAKGKDLERIWATVQELPNVRSK----SYVLAIEAFGRIAQVSRAEELWLEMQSVK 299
           L   +AK K  + + +  + + N+R      SY + I  F R +Q+  A  +  +M  + 
Sbjct: 86  LLSAIAKMKKFDLVISLGERMQNLRISYDLYSYNILINCFCRRSQLPLALAVLGKMMKLG 145

Query: 300 QLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGF 359
                   +S+++ YC +  I  A  L+ +M   G KP+ +T+  L  G F  N   E  
Sbjct: 146 YEPDIVTLSSLLNGYCHSKRISDAVALVDQMVEMGYKPDTVTFNTLIHGLFLHNKASE-- 203

Query: 360 KALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVY 419
                 + L+     R   P L T  +++    ++GD+  A +L ++++K        +Y
Sbjct: 204 -----AVALVDQMVQRGCQPDLVTYGAVVNGLCKRGDIDLALSLLKKMEKGKIEADVVIY 258

Query: 420 NTLIKAYVKAK-INDP-NLLRRMILGGARPDAETYSLL 455
           NT+I    K K I+D   L  +M   G RPD  TY+ L
Sbjct: 259 NTIIDGLCKYKHIDDAFALFNKMETKGIRPDVFTYNSL 296



 Score = 60.1 bits (144), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 74/350 (21%), Positives = 135/350 (38%), Gaps = 49/350 (14%)

Query: 111 IKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHI 170
           I  ++  + +M  +G+    + FN LI       +      ++ QM      P + T+  
Sbjct: 166 ISDAVALVDQMVEMGYKPDTVTFNTLIHGLFLHNKASEAVALVDQMVQRGCQPDLVTYGA 225

Query: 171 LMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSM 230
           ++       +I+  + +   M++ ++E + V Y  +       +    A      +E   
Sbjct: 226 VVNGLCKRGDIDLALSLLKKMEKGKIEADVVIYNTIIDGLCKYKHIDDAFALFNKMETKG 285

Query: 231 TGNNWSTLDVLIILYGYLAKGKDLERIWATVQEL---PNVRSKSYVLAIEAFGRIAQVSR 287
              +  T + LI       +  D  R+ + + E    PNV + S +  I+AF +  ++  
Sbjct: 286 IRPDVFTYNSLISCLCNYGRWSDASRLLSNMIERKINPNVVTFSAL--IDAFVKEGKLVE 343

Query: 288 AEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLAL 347
           AE+L+ EM           Y+S+I+ +C +  +D+A  + + M    C PN +TY  L  
Sbjct: 344 AEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIK 403

Query: 348 GCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEEL 407
           G  K+  VEEG +                                          LF E+
Sbjct: 404 GFCKAKRVEEGME------------------------------------------LFREM 421

Query: 408 KKANYTKYTFVYNTLIKAYVKAKIND--PNLLRRMILGGARPDAETYSLL 455
            +      T  YNTLI+   +A   D    + ++M+  G  PD  TYS+L
Sbjct: 422 SQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSIL 471


>gi|218190347|gb|EEC72774.1| hypothetical protein OsI_06434 [Oryza sativa Indica Group]
          Length = 579

 Score = 79.0 bits (193), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 101/463 (21%), Positives = 198/463 (42%), Gaps = 58/463 (12%)

Query: 44  RALEVM-EWVIRERPYRPKELDYSYLLEFTIKNHGISQGEKLFCCIP-KDYQNELL-YNN 100
           R LE+  +W +R   Y      Y  +++  +++  +S+G +++  +  K Y+ ++  YN 
Sbjct: 114 RCLELASKWGLRLSGYT-----YKCIVQAHLRSREVSKGFQVYEEMRRKGYKLDIFAYNM 168

Query: 101 LVIACLDKGVIKLSL---EYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMK 157
           L+ A    G++  +    E MK+   +  + +Y +   LI ++   GR     +   +M 
Sbjct: 169 LLDALAKAGMVDQAFQVFEDMKQKHCVPDAYTYTI---LIRMSGKAGRTSKFLSFFDEMV 225

Query: 158 ADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCI----LATAHAVA 213
           +     ++  F+ +++    +  ++ ++ V S M  ++ +PN+ +Y I    LAT   + 
Sbjct: 226 SKGCVLNLIAFNTIIEALGKNKMVDKVIFVLSKMVENDCQPNQFTYSITLDILATEGQLH 285

Query: 214 RLYTVAETYVEALEKSM----------TGNNWSTLDVLIILYGYLAKGKDLERIWATVQE 263
           RL  V +     + +S+          +G+     +V   ++    KG D +   + ++ 
Sbjct: 286 RLNEVLDICSRFMNRSIYSYLVKSLCKSGHASEAHNVFCRMWNSHEKG-DRDAFVSMLEV 344

Query: 264 LPNVRSK--------------------SYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKA 303
           L N                         Y +   A G++ QVS    L+ +M++   +  
Sbjct: 345 LCNAEKTLEAIDLLHMMPEKGIVTDVGMYNMVFSALGKLKQVSFISNLFDKMKTNGIIPD 404

Query: 304 TEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALE 363
              YN +IS Y + G +DKAS L + M  + CKP+ +TY  L + C   +        L+
Sbjct: 405 VFTYNIMISSYGRVGLVDKASELFEVMEASSCKPDVVTYNSL-INCLGKH------GDLD 457

Query: 364 LGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLI 423
               L    + +   P + T   +IE F +   V  A +LF+E+     T     YN L+
Sbjct: 458 EAHMLFKEMQEKGYDPDVFTYSILIECFGKSNKVEMACSLFDEMISEGCTPNIVTYNILL 517

Query: 424 KAY-VKAKINDPN-LLRRMILGGARPDAETYSLLKLAEQFQKK 464
                + K  + + L   M   G  PD+ TYS+L+  E   ++
Sbjct: 518 DCLERRGKTEEAHKLYETMKQQGLIPDSITYSILERLESRSQR 560


>gi|449457361|ref|XP_004146417.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g23020-like [Cucumis sativus]
          Length = 858

 Score = 79.0 bits (193), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 83/362 (22%), Positives = 150/362 (41%), Gaps = 35/362 (9%)

Query: 98  YNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMK 157
           YN L+      G +K +    + M   G S + + FN +I +  + G+ K +  ++++M+
Sbjct: 319 YNTLIDTYGKAGQLKEASTTFENMLKEGVSPTTVTFNTMIHICGNHGQLKEVTFLMQKME 378

Query: 158 ADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYT 217
             +  P   T++IL+ + A   NI+     +++M+ + ++P+ VSY  L  A+++  +  
Sbjct: 379 ELQCPPDTRTYNILISLYAKHDNIDLASNYFAEMEEAGLQPDIVSYRTLLYAYSIRHMVA 438

Query: 218 VAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQEL---PNVRSKSYVL 274
            AE  +  +++     +  T   L  +Y        LE  W+         ++ S+ Y  
Sbjct: 439 EAEKLITEMDERGLEIDEFTQSALTRMY---IDAGMLEESWSWFWRFHLAGHMSSECYSA 495

Query: 275 AIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNG 334
            I+A+G    +  AE +++  Q  K+    E +N +I  Y       KA  +   M  NG
Sbjct: 496 NIDAYGERGFILEAERVFVSCQEEKKCTVLE-FNVMIKAYGVVKDYAKAQKIFDSMKSNG 554

Query: 335 CKPNAITYRHL------------ALG-------------CFKSNLVEEGFKAL---ELGM 366
             P+  +Y  L            AL              C   ++V   F  L   E+  
Sbjct: 555 VVPDKCSYSSLIQILTGADMPAMALAYLKKMQSAGLVSDCIPYSVVISSFSKLGHLEMAD 614

Query: 367 KLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAY 426
           KL          P +     +I  FA+ G V  A N    +K+   +  T +YN+LIK Y
Sbjct: 615 KLYREMVKHGVQPDIIVYGVLINAFADAGSVKEAINYVNAMKRDGLSGNTVIYNSLIKLY 674

Query: 427 VK 428
            K
Sbjct: 675 TK 676



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 70/332 (21%), Positives = 151/332 (45%), Gaps = 17/332 (5%)

Query: 68  LLEFT--IKNHGI----SQGEKLFCCIPKD--YQNELLYNNLVIACLDKGVIKLSLEYMK 119
           +LEF   IK +G+    ++ +K+F  +  +    ++  Y++L+       +  ++L Y+K
Sbjct: 524 VLEFNVMIKAYGVVKDYAKAQKIFDSMKSNGVVPDKCSYSSLIQILTGADMPAMALAYLK 583

Query: 120 KMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDH 179
           KM+  G     + ++ +I   S  G  +    + R+M    V P +  + +L+   A+  
Sbjct: 584 KMQSAGLVSDCIPYSVVISSFSKLGHLEMADKLYREMVKHGVQPDIIVYGVLINAFADAG 643

Query: 180 NIEGLMKVYSDMKRSEVEPNEVSYCILATAHA-VARLYTVAETYVEALEKSMTGNNWSTL 238
           +++  +   + MKR  +  N V Y  L   +  V  L    E Y + LE++  G    + 
Sbjct: 644 SVKEAINYVNAMKRDGLSGNTVIYNSLIKLYTKVGYLKEAHEAY-KMLEQTDDGPAIYSS 702

Query: 239 DVLIILYGYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSV 298
           + +I LY   +  K+ E I+ ++++       ++ + +  + +I ++  A  +  +M+  
Sbjct: 703 NCMIDLYSERSMVKEAEEIFESLKKKGEANEFTFAMMLCMYKKIGRIQEAICVARQMKEQ 762

Query: 299 KQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEG 358
             L     +N++IS+Y  +G   +A  + +EM     +P+  TY+ L +   K  + ++ 
Sbjct: 763 GLLSDLLSFNNMISLYAMDGRFKEAVSIFQEMMKAAVQPDECTYKSLGVVLLKCGVSKQA 822

Query: 359 FKALELGMKLITTKKVRSS--TPWLETTLSII 388
              LE     +T KK   S    W+    S++
Sbjct: 823 VSKLE-----VTAKKDAQSGLQAWVSVLSSVV 849



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 80/367 (21%), Positives = 143/367 (38%), Gaps = 62/367 (16%)

Query: 147 KTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCIL 206
           + + ++  +M    + P  ST+  L+ + +     E  +     M    +EP+EV+  I+
Sbjct: 203 RLVESLWVEMNKKGIKPINSTYGTLIDVYSKGGFKEEALVWLERMNEQGMEPDEVTMGIV 262

Query: 207 ATAHAVARLYTVAETYVE---------------------ALEKSMTGNNWS----TLDVL 241
              +  A  +  AE++ +                      +E S+   + S    T + L
Sbjct: 263 VQLYKKAGEFQKAESFFKKWSSCNSMKYEITNKKKAASVKVESSLHPPHVSLSTYTYNTL 322

Query: 242 IILYGYLAKGKDLERIWAT-VQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQ 300
           I  YG   + K+    +   ++E  +  + ++   I   G   Q+     L  +M+ ++ 
Sbjct: 323 IDTYGKAGQLKEASTTFENMLKEGVSPTTVTFNTMIHICGNHGQLKEVTFLMQKMEELQC 382

Query: 301 LKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFK 360
              T  YN +IS+Y K+  ID AS    EM   G +P+ ++YR L       ++V E  K
Sbjct: 383 PPDTRTYNILISLYAKHDNIDLASNYFAEMEEAGLQPDIVSYRTLLYAYSIRHMVAEAEK 442

Query: 361 AL----ELGMKL------------ITTKKVRSSTPWL-----------ETTLSIIEIFAE 393
            +    E G+++            I    +  S  W            E   + I+ + E
Sbjct: 443 LITEMDERGLEIDEFTQSALTRMYIDAGMLEESWSWFWRFHLAGHMSSECYSANIDAYGE 502

Query: 394 KGDVGNAENLF---EELKKANYTKYTFVYNTLIKAY--VKAKINDPNLLRRMILGGARPD 448
           +G +  AE +F   +E KK         +N +IKAY  VK       +   M   G  PD
Sbjct: 503 RGFILEAERVFVSCQEEKKCT----VLEFNVMIKAYGVVKDYAKAQKIFDSMKSNGVVPD 558

Query: 449 AETYSLL 455
             +YS L
Sbjct: 559 KCSYSSL 565



 Score = 49.3 bits (116), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 50/208 (24%), Positives = 95/208 (45%), Gaps = 28/208 (13%)

Query: 272 YVLAIEAFGRIAQVSRAEELWLEM--QSVKQLKATEQYNSVISVYCKNGFIDKASGLLKE 329
           Y + +   G+  +    E LW+EM  + +K + +T  Y ++I VY K GF ++A   L+ 
Sbjct: 189 YNIVLGTLGKAQKWRLVESLWVEMNKKGIKPINST--YGTLIDVYSKGGFKEEALVWLER 246

Query: 330 MSMNGCKPNAITYR-----HLALGCFKSNLVEEGFKALEL--GMKLITTKKVRSSTPWLE 382
           M+  G +P+ +T       +   G F+    E  FK       MK   T K ++++  +E
Sbjct: 247 MNEQGMEPDEVTMGIVVQLYKKAGEFQK--AESFFKKWSSCNSMKYEITNKKKAASVKVE 304

Query: 383 TTL-------------SIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIK-AYVK 428
           ++L             ++I+ + + G +  A   FE + K   +  T  +NT+I      
Sbjct: 305 SSLHPPHVSLSTYTYNTLIDTYGKAGQLKEASTTFENMLKEGVSPTTVTFNTMIHICGNH 364

Query: 429 AKINDPN-LLRRMILGGARPDAETYSLL 455
            ++ +   L+++M      PD  TY++L
Sbjct: 365 GQLKEVTFLMQKMEELQCPPDTRTYNIL 392


>gi|356528730|ref|XP_003532952.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g73710-like [Glycine max]
          Length = 963

 Score = 79.0 bits (193), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 75/336 (22%), Positives = 143/336 (42%), Gaps = 16/336 (4%)

Query: 98  YNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMK 157
           YN L+      G +  + E   +M   G ++    FN +I +  S G       +L  M+
Sbjct: 274 YNVLIDLYGKAGRLSEAAEVFAEMLKAGVAVDVWTFNTMIFVCGSQGDLAEAEALLGMME 333

Query: 158 ADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYT 217
              VAP   TF+I + + A   +I   +  Y  ++ + + P+EV+Y  L        +  
Sbjct: 334 EKGVAPDTKTFNIFLSLYAEARDIGAAVLCYKRIREAGLCPDEVTYRALLGVLCRKNMVR 393

Query: 218 VAETYVEALEKSMTGNNWSTLDVLIILY---GYLAKGKDLERIWATVQEL-PNVRSKSYV 273
             E  ++ +E++    +   +  ++ +Y   G + K  DL + +    E+  N+RS    
Sbjct: 394 EVEDLIDEMERAFVSVDEHCVPGIVEMYVGEGDVDKAFDLLKKFQVNGEMSSNIRSA--- 450

Query: 274 LAIEAFGRIAQVSRAEELWLEMQSVKQLK-ATEQYNSVISVYCKNGFIDKASGLLKEMSM 332
             ++ F        AE+++   +++   K    + N +I  Y K    DKA  L K M  
Sbjct: 451 -IMDVFAEKGLWEEAEDVFYRGRNLAGRKRDVLECNVMIKAYGKAKLYDKAISLFKGMKN 509

Query: 333 NGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFA 392
           +G  PN  TY  L      ++LV++        M L+   +     P  +T  ++I  +A
Sbjct: 510 HGTWPNESTYNSLVQMLSGADLVDQ-------AMDLVDEMQEVGFKPPCQTFSAVIGCYA 562

Query: 393 EKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVK 428
             G + +A ++F+E+ +        VY +LI  + +
Sbjct: 563 RLGQLSDAVSVFKEMVRTGVKPNEVVYGSLINGFAE 598



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 84/429 (19%), Positives = 166/429 (38%), Gaps = 54/429 (12%)

Query: 37  RKLQLNKRALEVMEWVIRERPY-RPKELDYSYLLEFTIKNHGISQGEKLFCCIPKDYQNE 95
           R   L  R  +V+E  +  + Y + K  D +  L   +KNHG              + NE
Sbjct: 470 RGRNLAGRKRDVLECNVMIKAYGKAKLYDKAISLFKGMKNHGT-------------WPNE 516

Query: 96  LLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQ 155
             YN+LV       ++  +++ + +M+ +G       F+ +I   +  G+     ++ ++
Sbjct: 517 STYNSLVQMLSGADLVDQAMDLVDEMQEVGFKPPCQTFSAVIGCYARLGQLSDAVSVFKE 576

Query: 156 MKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEV-------SYCILAT 208
           M    V P+   +  L+   A   ++E  +K +  M+ S +  N V       SYC +  
Sbjct: 577 MVRTGVKPNEVVYGSLINGFAEHGSLEEALKYFHMMEESGLSSNLVVLTSLLKSYCKVGN 636

Query: 209 AHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVR 268
                 +Y       E ++    G +    + +I L+  L    + +  +  ++E+    
Sbjct: 637 LEGAKAIY-------ERMKNMEGGLDLVACNSMIGLFADLGLVSEAKLAFENLREMGRAD 689

Query: 269 SKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLK 328
           + SY   +  +  +  +  A E+  EM+    L+    YN V+  Y  NG   +   L+ 
Sbjct: 690 AISYATIMYLYKGVGLIDEAIEIAEEMKLSGLLRDCVSYNKVLVCYAANGQFYECGELIH 749

Query: 329 EMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALE---------------------LGMK 367
           EM      PN  T++ L     K  +  E    LE                     +GM 
Sbjct: 750 EMISQKLLPNDGTFKVLFTILKKGGIPTEAVAQLESSYQEGKPYARQTTFTALYSLVGMH 809

Query: 368 LITTKKVRS---STPWLETTLSIIEIFA--EKGDVGNAENLFEELKKANYTKYTFVYNTL 422
            +  +  ++   S   L+++   + I+A    GD+  A N++ +++  +       Y  L
Sbjct: 810 NLALESAQTFIESEVDLDSSAFNVAIYAYGSAGDINKALNIYMKMRDEHLGPDLVTYIYL 869

Query: 423 IKAYVKAKI 431
           +  Y KA +
Sbjct: 870 VGCYGKAGM 878



 Score = 44.3 bits (103), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 57/251 (22%), Positives = 106/251 (42%), Gaps = 19/251 (7%)

Query: 212 VARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQE---LPNVR 268
             RL   AE + E L+  +  + W T + +I + G      + E +   ++E    P+ +
Sbjct: 284 AGRLSEAAEVFAEMLKAGVAVDVW-TFNTMIFVCGSQGDLAEAEALLGMMEEKGVAPDTK 342

Query: 269 SKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLK 328
           + +  L++ A  R   +  A   +  ++          Y +++ V C+   + +   L+ 
Sbjct: 343 TFNIFLSLYAEAR--DIGAAVLCYKRIREAGLCPDEVTYRALLGVLCRKNMVREVEDLID 400

Query: 329 EMSMNGCKPNAITYRHLALGCFKSNLVEEGF-KALELGMKLITTKKVRSSTPWLETTLSI 387
           EM     +       H   G  +  + E    KA +L  K     ++ S+        +I
Sbjct: 401 EME----RAFVSVDEHCVPGIVEMYVGEGDVDKAFDLLKKFQVNGEMSSNI-----RSAI 451

Query: 388 IEIFAEKGDVGNAENLFEELKK-ANYTKYTFVYNTLIKAYVKAKINDP--NLLRRMILGG 444
           +++FAEKG    AE++F   +  A   +     N +IKAY KAK+ D   +L + M   G
Sbjct: 452 MDVFAEKGLWEEAEDVFYRGRNLAGRKRDVLECNVMIKAYGKAKLYDKAISLFKGMKNHG 511

Query: 445 ARPDAETYSLL 455
             P+  TY+ L
Sbjct: 512 TWPNESTYNSL 522


>gi|357499959|ref|XP_003620268.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355495283|gb|AES76486.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 652

 Score = 79.0 bits (193), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 82/376 (21%), Positives = 159/376 (42%), Gaps = 21/376 (5%)

Query: 94  NELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNIL 153
           N ++YN ++ +     ++  + +   +M   G S   + ++ LI      G+     ++ 
Sbjct: 224 NVVMYNTIIDSMCKVKLVNEAFDLFSEMISKGISPDVVTYSALISGFCILGKLNDAIDLF 283

Query: 154 RQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVA 213
            +M  + + P V TF+IL+     D  ++    V+  M +  ++PN V+Y  L   + + 
Sbjct: 284 NKMILENIKPDVYTFNILVNAFCKDGKMKEGKTVFDMMMKQGIKPNFVTYNSLMDGYCLV 343

Query: 214 RLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQE---LPNVRSK 270
           +    A++    + +     +  +  ++I  +  + K  +   ++  +     +P+V + 
Sbjct: 344 KEVNKAKSIFNTMAQGGVNPDIQSYSIMINGFCKIKKFDEAMNLFKEMHRKNIIPDVVT- 402

Query: 271 SYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEM 330
            Y   I+   +  ++S A +L  +M           YNS++   CK   +DKA  LL ++
Sbjct: 403 -YSSLIDGLSKSGRISYALQLVDQMHDRGVPPTIRTYNSILDALCKIHQVDKAIALLTKL 461

Query: 331 SMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEI 390
              G +PN  TY  L  G  +S  +E+  K  E G+       V+     ++T   +I+ 
Sbjct: 462 KDKGIQPNMYTYSILIKGLCQSGKLEDARKVFE-GL------LVKGHNLNVDTYTIMIQG 514

Query: 391 FAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKIND--PNLLRRMILGGARPD 448
           F  +G    A  L  +++          Y  +I +  K   ND    LLR MI  G RP 
Sbjct: 515 FCVEGLFNEALALLSKMEDNGCIPDAKTYEIIILSLFKKDENDMAEKLLREMIARGVRPR 574

Query: 449 AETYSLLKLAEQFQKK 464
                  ++A  FQKK
Sbjct: 575 -------QIAIWFQKK 583



 Score = 68.2 bits (165), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 70/357 (19%), Positives = 157/357 (43%), Gaps = 17/357 (4%)

Query: 105 CLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPH 164
           CL KG I+ +  +  K+  LG     + +  LI      G  +   ++L+++  + V P+
Sbjct: 166 CL-KGQIQQAFLFHDKVVALGFHFDQISYGTLIHGLCKVGETRAALDLLQRVDGNLVQPN 224

Query: 165 VSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAV-ARLYTVAETYV 223
           V  ++ ++        +     ++S+M    + P+ V+Y  L +   +  +L    + + 
Sbjct: 225 VVMYNTIIDSMCKVKLVNEAFDLFSEMISKGISPDVVTYSALISGFCILGKLNDAIDLFN 284

Query: 224 EALEKSMTGNNWSTLDVLIILY---GYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFG 280
           + + +++  + + T ++L+  +   G + +GK +  +       PN    +Y   ++ + 
Sbjct: 285 KMILENIKPDVY-TFNILVNAFCKDGKMKEGKTVFDMMMKQGIKPNFV--TYNSLMDGYC 341

Query: 281 RIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAI 340
            + +V++A+ ++  M         + Y+ +I+ +CK    D+A  L KEM      P+ +
Sbjct: 342 LVKEVNKAKSIFNTMAQGGVNPDIQSYSIMINGFCKIKKFDEAMNLFKEMHRKNIIPDVV 401

Query: 341 TYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNA 400
           TY  L  G  KS         +   ++L+     R   P + T  SI++   +   V  A
Sbjct: 402 TYSSLIDGLSKSG-------RISYALQLVDQMHDRGVPPTIRTYNSILDALCKIHQVDKA 454

Query: 401 ENLFEELKKANYTKYTFVYNTLIKAYVKA-KINDP-NLLRRMILGGARPDAETYSLL 455
             L  +LK        + Y+ LIK   ++ K+ D   +   +++ G   + +TY+++
Sbjct: 455 IALLTKLKDKGIQPNMYTYSILIKGLCQSGKLEDARKVFEGLLVKGHNLNVDTYTIM 511



 Score = 39.3 bits (90), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 42/179 (23%), Positives = 75/179 (41%), Gaps = 32/179 (17%)

Query: 308 NSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALG-CFKSNLVEEGF----KAL 362
           N +I+ +C+ G I  A  +  ++   G  P+ IT+  L  G C K   +++ F    K +
Sbjct: 124 NILINCFCQLGLIPFAFSVFAKILKMGYVPDTITFTTLIKGLCLKGQ-IQQAFLFHDKVV 182

Query: 363 ELGMK------------LITTKKVRSSTPWLETTL------------SIIEIFAEKGDVG 398
            LG              L    + R++   L+               +II+   +   V 
Sbjct: 183 ALGFHFDQISYGTLIHGLCKVGETRAALDLLQRVDGNLVQPNVVMYNTIIDSMCKVKLVN 242

Query: 399 NAENLFEELKKANYTKYTFVYNTLIKAY-VKAKINDP-NLLRRMILGGARPDAETYSLL 455
            A +LF E+     +     Y+ LI  + +  K+ND  +L  +MIL   +PD  T+++L
Sbjct: 243 EAFDLFSEMISKGISPDVVTYSALISGFCILGKLNDAIDLFNKMILENIKPDVYTFNIL 301


>gi|15221549|ref|NP_176454.1| RNA processing factor 2 [Arabidopsis thaliana]
 gi|193806496|sp|Q9SXD1.2|PPR91_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g62670, mitochondrial; Flags: Precursor
 gi|332195871|gb|AEE33992.1| RNA processing factor 2 [Arabidopsis thaliana]
          Length = 630

 Score = 79.0 bits (193), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 82/365 (22%), Positives = 156/365 (42%), Gaps = 14/365 (3%)

Query: 96  LLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQ 155
           L+YN ++        +  +L   K+M   G   + + ++ LI    + GR      +L  
Sbjct: 257 LIYNTIIDGLCKYKHMDDALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSD 316

Query: 156 MKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARL 215
           M   K+ P V TF  L+     +  +    K+Y +M +  ++P+ V+Y  L     +   
Sbjct: 317 MIERKINPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDR 376

Query: 216 YTVAETYVEALEKSMTGNNWSTLDVLI---ILYGYLAKGKDLERIWATVQELPNVRSKSY 272
              A+   E +       +  T + LI     Y  + +G ++ R  +    + N  + +Y
Sbjct: 377 LDEAKQMFEFMVSKHCFPDVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGN--TVTY 434

Query: 273 VLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSM 332
            + I+   +      A+E++ EM S         YN+++   CKNG ++KA  + + +  
Sbjct: 435 NILIQGLFQAGDCDMAQEIFKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQR 494

Query: 333 NGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFA 392
           +  +P   TY  +  G  K+  VE+G+        L     ++   P +    ++I  F 
Sbjct: 495 SKMEPTIYTYNIMIEGMCKAGKVEDGWD-------LFCNLSLKGVKPDVVAYNTMISGFC 547

Query: 393 EKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKINDPN--LLRRMILGGARPDAE 450
            KG    A+ LF+E+K+      +  YNTLI+A ++    + +  L++ M   G   DA 
Sbjct: 548 RKGSKEEADALFKEMKEDGTLPNSGCYNTLIRARLRDGDREASAELIKEMRSCGFAGDAS 607

Query: 451 TYSLL 455
           T  L+
Sbjct: 608 TIGLV 612



 Score = 68.6 bits (166), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 51/187 (27%), Positives = 83/187 (44%), Gaps = 9/187 (4%)

Query: 271 SYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEM 330
           +Y + I  F R +Q+  A  +  +M  +         +S+++ YC +  I +A  L+ +M
Sbjct: 118 TYSILINCFCRRSQLPLALAVLGKMMKLGYEPNIVTLSSLLNGYCHSKRISEAVALVDQM 177

Query: 331 SMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEI 390
            + G +PN +T+  L  G F  N   E        M LI     +   P L T   ++  
Sbjct: 178 FVTGYQPNTVTFNTLIHGLFLHNKASE-------AMALIDRMVAKGCQPDLVTYGVVVNG 230

Query: 391 FAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKINDP--NLLRRMILGGARPD 448
             ++GD   A NL  ++++        +YNT+I    K K  D   NL + M   G RP+
Sbjct: 231 LCKRGDTDLAFNLLNKMEQGKLEPGVLIYNTIIDGLCKYKHMDDALNLFKEMETKGIRPN 290

Query: 449 AETYSLL 455
             TYS L
Sbjct: 291 VVTYSSL 297


>gi|225459754|ref|XP_002284756.1| PREDICTED: pentatricopeptide repeat-containing protein At1g20300,
           mitochondrial-like [Vitis vinifera]
          Length = 531

 Score = 78.6 bits (192), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 73/310 (23%), Positives = 140/310 (45%), Gaps = 26/310 (8%)

Query: 156 MKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARL 215
           MK   V   V TF IL++           +  ++ M+    +P+++++ ++ ++ +  R 
Sbjct: 172 MKTRNVEIPVETFTILVRRYVKAGLAAEAVHAFNRMEDYGCKPDKIAFSVVISSLSKKRR 231

Query: 216 YTVAETYVEALEKSMTGNNWSTLDVLI---ILYGYLAKG--KDLERIWATVQEL---PNV 267
              A+++ ++L+           DV++   +++G+   G   + ER++  ++     PNV
Sbjct: 232 AIEAQSFFDSLKDRFEP------DVVVYTSLVHGWCRAGNISEAERVFGEMKMAGIQPNV 285

Query: 268 RSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLL 327
            +  Y + I+A  R  Q++RA +++ EM  V        +N+++ V+ K G  +K   + 
Sbjct: 286 YT--YSIVIDALCRSGQITRAHDVFSEMIDVGCDPNAITFNNLMRVHVKAGRTEKVLQVY 343

Query: 328 KEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSI 387
            +M   GC P+AITY  L     + + +EE  K L   +K        S  P       I
Sbjct: 344 NQMKRLGCPPDAITYNFLIESHCRDDNLEEAVKILN-SVKKGCNLNASSFNP-------I 395

Query: 388 IEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKINDP--NLLRRMILGGA 445
               ++ GDV +A  +F ++K       T  YN L++ +   K  D    L + M     
Sbjct: 396 FGCISKLGDVNSAHRMFAKMKDLKCRPNTVTYNILMRMFADKKSTDMVLKLRKEMDENEI 455

Query: 446 RPDAETYSLL 455
            P+A TY +L
Sbjct: 456 EPNANTYRVL 465



 Score = 55.5 bits (132), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 68/350 (19%), Positives = 141/350 (40%), Gaps = 42/350 (12%)

Query: 59  RPKELDYSYLLEFTIKNHGISQGEKLFCCIPKDYQNELL-YNNLVIACLDKGVIKLSLEY 117
           +P ++ +S ++    K     + +  F  +   ++ +++ Y +LV      G I  +   
Sbjct: 213 KPDKIAFSVVISSLSKKRRAIEAQSFFDSLKDRFEPDVVVYTSLVHGWCRAGNISEAERV 272

Query: 118 MKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEAN 177
             +M++ G   +   ++ +I      G+     ++  +M      P+  TF+ LM++   
Sbjct: 273 FGEMKMAGIQPNVYTYSIVIDALCRSGQITRAHDVFSEMIDVGCDPNAITFNNLMRVHVK 332

Query: 178 DHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWST 237
               E +++VY+ MKR    P+ ++Y  L  +H             + LE+++       
Sbjct: 333 AGRTEKVLQVYNQMKRLGCPPDAITYNFLIESHCRD----------DNLEEAV------- 375

Query: 238 LDVLIILYGYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQS 297
                             +I  +V++  N+ + S+        ++  V+ A  ++ +M+ 
Sbjct: 376 ------------------KILNSVKKGCNLNASSFNPIFGCISKLGDVNSAHRMFAKMKD 417

Query: 298 VKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEE 357
           +K    T  YN ++ ++      D    L KEM  N  +PNA TYR L +  F    +  
Sbjct: 418 LKCRPNTVTYNILMRMFADKKSTDMVLKLRKEMDENEIEPNANTYRVL-ISTFCG--IGH 474

Query: 358 GFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEEL 407
              A     ++I  K +R S P  E  L  +    + G +   E L E++
Sbjct: 475 WNNAYSFFKEMIEEKCLRPSLPVYEMVLQQLR---KAGQLKKHEELVEKM 521



 Score = 45.8 bits (107), Expect = 0.043,   Method: Compositional matrix adjust.
 Identities = 46/200 (23%), Positives = 82/200 (41%), Gaps = 10/200 (5%)

Query: 258 WATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKN 317
           WAT  E      + Y+  I+  G++ Q   A +L   M++       E +  ++  Y K 
Sbjct: 135 WATNLEEFGHSPEPYMEMIDLAGKVRQFDLAWQLIDLMKTRNVEIPVETFTILVRRYVKA 194

Query: 318 GFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSS 377
           G   +A      M   GCKP+ I +  +     K        +A+E       + K R  
Sbjct: 195 GLAAEAVHAFNRMEDYGCKPDKIAFSVVISSLSKKR------RAIE-AQSFFDSLKDRFE 247

Query: 378 TPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAK--INDPN 435
            P +    S++  +   G++  AE +F E+K A      + Y+ +I A  ++       +
Sbjct: 248 -PDVVVYTSLVHGWCRAGNISEAERVFGEMKMAGIQPNVYTYSIVIDALCRSGQITRAHD 306

Query: 436 LLRRMILGGARPDAETYSLL 455
           +   MI  G  P+A T++ L
Sbjct: 307 VFSEMIDVGCDPNAITFNNL 326



 Score = 45.4 bits (106), Expect = 0.055,   Method: Compositional matrix adjust.
 Identities = 62/315 (19%), Positives = 122/315 (38%), Gaps = 47/315 (14%)

Query: 36  LRKLQLNKRALEVMEWV--IRERPYRPKELDYSYLLEFTIKNHGISQGEKLF--CCIPKD 91
           +  L   +RA+E   +   +++R + P  + Y+ L+    +   IS+ E++F    +   
Sbjct: 223 ISSLSKKRRAIEAQSFFDSLKDR-FEPDVVVYTSLVHGWCRAGNISEAERVFGEMKMAGI 281

Query: 92  YQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPN 151
             N   Y+ ++ A    G I  + +   +M  +G   + + FN L+ ++   GR + +  
Sbjct: 282 QPNVYTYSIVIDALCRSGQITRAHDVFSEMIDVGCDPNAITFNNLMRVHVKAGRTEKVLQ 341

Query: 152 ILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHA 211
           +  QMK     P   T++ L++    D N+E  +K+ + +K+          C L     
Sbjct: 342 VYNQMKRLGCPPDAITYNFLIESHCRDDNLEEAVKILNSVKKG---------CNL----- 387

Query: 212 VARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQEL---PNVR 268
                                 N S+ + +      L       R++A +++L   PN  
Sbjct: 388 ----------------------NASSFNPIFGCISKLGDVNSAHRMFAKMKDLKCRPN-- 423

Query: 269 SKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLK 328
           + +Y + +  F          +L  EM   +       Y  +IS +C  G  + A    K
Sbjct: 424 TVTYNILMRMFADKKSTDMVLKLRKEMDENEIEPNANTYRVLISTFCGIGHWNNAYSFFK 483

Query: 329 EMSMNGC-KPNAITY 342
           EM    C +P+   Y
Sbjct: 484 EMIEEKCLRPSLPVY 498


>gi|223949005|gb|ACN28586.1| unknown [Zea mays]
          Length = 396

 Score = 78.6 bits (192), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 78/363 (21%), Positives = 161/363 (44%), Gaps = 22/363 (6%)

Query: 58  YRPKELDYSYLLEFTIKNHGISQGEKLFCCIPKDYQNELLYNNLVIACLDKGVIKLSLEY 117
           + PK  D++  L+   + HG+   E  F  +    + E  Y  L+     + ++  +L +
Sbjct: 9   FLPK--DHAIHLDLIGQIHGVEAAETYFNNLSDKDKTEKPYGALLNCYTRELLVDKALAH 66

Query: 118 MKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEAN 177
            + M+ LG   S L +N L+ L +  G+ + +P+++ +MK++ + P   ++ I +     
Sbjct: 67  FRNMKELGFVFSTLPYNDLMGLYTRIGQHERVPSVMAEMKSNGIVPDNFSYRICINSYGT 126

Query: 178 DHNIEGLMKVYSDMKRSEVEPNEV----SYCILATAHAVARLYTVAETYVEALEKSMTGN 233
             +  GL     +M   E EP  V    +Y ++A+ +    L   A + +   E  +   
Sbjct: 127 RADFFGLENTLEEM---ECEPQIVVDWNTYAVVASNYIKGDLREKAYSALSKAEAKLDKQ 183

Query: 234 NWSTLDVLIILYGYLAKGKDLERIWATVQELPNVR---SKSYVLAIEAFGRIAQVSRAEE 290
           +      LI LYG L    + +R+WA   ++ N +   ++ Y+  +    ++ +++ AE+
Sbjct: 184 DPDAYRHLISLYGNLGDKSEAKRLWAV--QMSNCKRYINRDYMNMLSVLVKLDEITEAED 241

Query: 291 LWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCF 350
           L  E +S +        N +++ Y +   +DKA  LL      G  P + ++  +A+G  
Sbjct: 242 LLKEWESSQNSFDFRVPNVLLTGYRQKALLDKAEMLLDGFLKKGKTPPSTSWGIVAIGYA 301

Query: 351 KSNLVEEGFKALELGMKLITTKKVRSSTPWLETTL---SIIEIFAEKGDVGNAENLFEEL 407
           +   V    KA E+    ++      +T W+        I++   ++G+V + E     L
Sbjct: 302 EKGDVA---KAYEMTKNALSVHA--PNTGWIPRPSMLEMILKYLGDEGEVKDVEAFVSLL 356

Query: 408 KKA 410
           K A
Sbjct: 357 KAA 359


>gi|449518091|ref|XP_004166077.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g23020-like [Cucumis sativus]
          Length = 859

 Score = 78.6 bits (192), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 83/362 (22%), Positives = 150/362 (41%), Gaps = 35/362 (9%)

Query: 98  YNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMK 157
           YN L+      G +K +    + M   G S + + FN +I +  + G+ K +  ++++M+
Sbjct: 320 YNTLIDTYGKAGQLKEASTTFENMLKEGVSPTTVTFNTMIHICGNHGQLKEVTFLMQKME 379

Query: 158 ADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYT 217
             +  P   T++IL+ + A   NI+     +++M+ + ++P+ VSY  L  A+++  +  
Sbjct: 380 ELQCPPDTRTYNILISLYAKHDNIDLASNYFAEMEEAGLQPDIVSYRTLLYAYSIRHMVA 439

Query: 218 VAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQEL---PNVRSKSYVL 274
            AE  +  +++     +  T   L  +Y        LE  W+         ++ S+ Y  
Sbjct: 440 EAEKLITEMDERGLEIDEFTQSALTRMY---IDAGMLEESWSWFWRFHLAGHMSSECYSA 496

Query: 275 AIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNG 334
            I+A+G    +  AE +++  Q  K+    E +N +I  Y       KA  +   M  NG
Sbjct: 497 NIDAYGERGFILEAERVFVSCQEEKKCTVLE-FNVMIKAYGVVKDYAKAQKIFDSMKSNG 555

Query: 335 CKPNAITYRHL------------ALG-------------CFKSNLVEEGFKAL---ELGM 366
             P+  +Y  L            AL              C   ++V   F  L   E+  
Sbjct: 556 VVPDKCSYSSLIQILTGADMPAMALAYLKKMQSAGLVSDCIPYSVVISSFSKLGHLEMAD 615

Query: 367 KLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAY 426
           KL          P +     +I  FA+ G V  A N    +K+   +  T +YN+LIK Y
Sbjct: 616 KLYREMVKHGVQPDIIVYGVLINAFADAGSVKEAINYVNAMKRDGLSGNTVIYNSLIKLY 675

Query: 427 VK 428
            K
Sbjct: 676 TK 677



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 70/332 (21%), Positives = 151/332 (45%), Gaps = 17/332 (5%)

Query: 68  LLEFT--IKNHGI----SQGEKLFCCIPKD--YQNELLYNNLVIACLDKGVIKLSLEYMK 119
           +LEF   IK +G+    ++ +K+F  +  +    ++  Y++L+       +  ++L Y+K
Sbjct: 525 VLEFNVMIKAYGVVKDYAKAQKIFDSMKSNGVVPDKCSYSSLIQILTGADMPAMALAYLK 584

Query: 120 KMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDH 179
           KM+  G     + ++ +I   S  G  +    + R+M    V P +  + +L+   A+  
Sbjct: 585 KMQSAGLVSDCIPYSVVISSFSKLGHLEMADKLYREMVKHGVQPDIIVYGVLINAFADAG 644

Query: 180 NIEGLMKVYSDMKRSEVEPNEVSYCILATAHA-VARLYTVAETYVEALEKSMTGNNWSTL 238
           +++  +   + MKR  +  N V Y  L   +  V  L    E Y + LE++  G    + 
Sbjct: 645 SVKEAINYVNAMKRDGLSGNTVIYNSLIKLYTKVGYLKEAHEAY-KMLEQTDDGPAIYSS 703

Query: 239 DVLIILYGYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSV 298
           + +I LY   +  K+ E I+ ++++       ++ + +  + +I ++  A  +  +M+  
Sbjct: 704 NCMIDLYSERSMVKEAEEIFESLKKKGEANEFTFAMMLCMYKKIGRIQEAICVARQMKEQ 763

Query: 299 KQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEG 358
             L     +N++IS+Y  +G   +A  + +EM     +P+  TY+ L +   K  + ++ 
Sbjct: 764 GLLSDLLSFNNMISLYAMDGRFKEAVSIFQEMMKAAVQPDECTYKSLGVVLLKCGVSKQA 823

Query: 359 FKALELGMKLITTKKVRSS--TPWLETTLSII 388
              LE     +T KK   S    W+    S++
Sbjct: 824 VSKLE-----VTXKKDAQSGLQAWVSVLSSVV 850



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 80/367 (21%), Positives = 143/367 (38%), Gaps = 62/367 (16%)

Query: 147 KTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCIL 206
           + + ++  +M    + P  ST+  L+ + +     E  +     M    +EP+EV+  I+
Sbjct: 204 RLVESLWVEMNKKGIKPINSTYGTLIDVYSKGGFKEEALVWLERMNEQGMEPDEVTMGIV 263

Query: 207 ATAHAVARLYTVAETYVE---------------------ALEKSMTGNNWS----TLDVL 241
              +  A  +  AE++ +                      +E S+   + S    T + L
Sbjct: 264 VQLYKKAGEFQKAESFFKKWSSCNSMKYEITNKKKAASVKVESSLHPPHVSLSTYTYNTL 323

Query: 242 IILYGYLAKGKDLERIWAT-VQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQ 300
           I  YG   + K+    +   ++E  +  + ++   I   G   Q+     L  +M+ ++ 
Sbjct: 324 IDTYGKAGQLKEASTTFENMLKEGVSPTTVTFNTMIHICGNHGQLKEVTFLMQKMEELQC 383

Query: 301 LKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFK 360
              T  YN +IS+Y K+  ID AS    EM   G +P+ ++YR L       ++V E  K
Sbjct: 384 PPDTRTYNILISLYAKHDNIDLASNYFAEMEEAGLQPDIVSYRTLLYAYSIRHMVAEAEK 443

Query: 361 AL----ELGMKL------------ITTKKVRSSTPWL-----------ETTLSIIEIFAE 393
            +    E G+++            I    +  S  W            E   + I+ + E
Sbjct: 444 LITEMDERGLEIDEFTQSALTRMYIDAGMLEESWSWFWRFHLAGHMSSECYSANIDAYGE 503

Query: 394 KGDVGNAENLF---EELKKANYTKYTFVYNTLIKAY--VKAKINDPNLLRRMILGGARPD 448
           +G +  AE +F   +E KK         +N +IKAY  VK       +   M   G  PD
Sbjct: 504 RGFILEAERVFVSCQEEKKCT----VLEFNVMIKAYGVVKDYAKAQKIFDSMKSNGVVPD 559

Query: 449 AETYSLL 455
             +YS L
Sbjct: 560 KCSYSSL 566



 Score = 49.3 bits (116), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 50/208 (24%), Positives = 95/208 (45%), Gaps = 28/208 (13%)

Query: 272 YVLAIEAFGRIAQVSRAEELWLEM--QSVKQLKATEQYNSVISVYCKNGFIDKASGLLKE 329
           Y + +   G+  +    E LW+EM  + +K + +T  Y ++I VY K GF ++A   L+ 
Sbjct: 190 YNIVLGTLGKAQKWRLVESLWVEMNKKGIKPINST--YGTLIDVYSKGGFKEEALVWLER 247

Query: 330 MSMNGCKPNAITYR-----HLALGCFKSNLVEEGFKALEL--GMKLITTKKVRSSTPWLE 382
           M+  G +P+ +T       +   G F+    E  FK       MK   T K ++++  +E
Sbjct: 248 MNEQGMEPDEVTMGIVVQLYKKAGEFQK--AESFFKKWSSCNSMKYEITNKKKAASVKVE 305

Query: 383 TTL-------------SIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIK-AYVK 428
           ++L             ++I+ + + G +  A   FE + K   +  T  +NT+I      
Sbjct: 306 SSLHPPHVSLSTYTYNTLIDTYGKAGQLKEASTTFENMLKEGVSPTTVTFNTMIHICGNH 365

Query: 429 AKINDPN-LLRRMILGGARPDAETYSLL 455
            ++ +   L+++M      PD  TY++L
Sbjct: 366 GQLKEVTFLMQKMEELQCPPDTRTYNIL 393


>gi|42570403|ref|NP_850357.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|330254930|gb|AEC10024.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 683

 Score = 78.6 bits (192), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 62/260 (23%), Positives = 117/260 (45%), Gaps = 7/260 (2%)

Query: 98  YNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMK 157
           YNNL+ AC   G  + +LE  KKM   G     +  N ++    S  +     +    MK
Sbjct: 84  YNNLINACGSSGNWREALEVCKKMTDNGVGPDLVTHNIVLSAYKSGRQYSKALSYFELMK 143

Query: 158 ADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDM--KRSEVEPNEVSYCILATAHAVARL 215
             KV P  +TF+I++   +        + +++ M  KR+E  P+ V++  +   ++V   
Sbjct: 144 GAKVRPDTTTFNIIIYCLSKLGQSSQALDLFNSMREKRAECRPDVVTFTSIMHLYSVKGE 203

Query: 216 YTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQE---LPNVRSKSY 272
                   EA+       N  + + L+  Y           +   +++   +P+V   SY
Sbjct: 204 IENCRAVFEAMVAEGLKPNIVSYNALMGAYAVHGMSGTALSVLGDIKQNGIIPDV--VSY 261

Query: 273 VLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSM 332
              + ++GR  Q  +A+E++L M+  ++      YN++I  Y  NGF+ +A  + ++M  
Sbjct: 262 TCLLNSYGRSRQPGKAKEVFLMMRKERRKPNVVTYNALIDAYGSNGFLAEAVEIFRQMEQ 321

Query: 333 NGCKPNAITYRHLALGCFKS 352
           +G KPN ++   L   C +S
Sbjct: 322 DGIKPNVVSVCTLLAACSRS 341



 Score = 65.5 bits (158), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 61/282 (21%), Positives = 125/282 (44%), Gaps = 16/282 (5%)

Query: 94  NELLYNNLVIACLDKGVIKLSLEYMKKMR---VLGHSISYLVFNRLIILNSSPGRRKTIP 150
           N + YN L+ A    G+   +L  +  ++   ++   +SY         +  PG+ K   
Sbjct: 222 NIVSYNALMGAYAVHGMSGTALSVLGDIKQNGIIPDVVSYTCLLNSYGRSRQPGKAK--- 278

Query: 151 NILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAH 210
            +   M+ ++  P+V T++ L+    ++  +   ++++  M++  ++PN VS C L  A 
Sbjct: 279 EVFLMMRKERRKPNVVTYNALIDAYGSNGFLAEAVEIFRQMEQDGIKPNVVSVCTLLAAC 338

Query: 211 AVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSK 270
           + ++     +T + A +      N +  +  I   G      +LE+  A  Q +   + K
Sbjct: 339 SRSKKKVNVDTVLSAAQSRGINLNTAAYNSAI---GSYINAAELEKAIALYQSMRKKKVK 395

Query: 271 ----SYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGL 326
               ++ + I    R+++   A     EM+ +      E Y+SV+  Y K G + +A  +
Sbjct: 396 ADSVTFTILISGSCRMSKYPEAISYLKEMEDLSIPLTKEVYSSVLCAYSKQGQVTEAESI 455

Query: 327 LKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKL 368
             +M M GC+P+ I Y  +       N  E+  KA EL +++
Sbjct: 456 FNQMKMAGCEPDVIAYTSM---LHAYNASEKWGKACELFLEM 494



 Score = 53.5 bits (127), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 61/305 (20%), Positives = 136/305 (44%), Gaps = 16/305 (5%)

Query: 132 VFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDM 191
            ++ LI  +   G+ +   N++  M    +AP  ST++ L+    +  N    ++V   M
Sbjct: 48  TYDALINAHGRAGQWRWAMNLMDDMLRAAIAPSRSTYNNLINACGSSGNWREALEVCKKM 107

Query: 192 KRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKG 251
             + V P+ V++ I+ +A+   R Y+ A +Y E ++ +    + +T +++I     L + 
Sbjct: 108 TDNGVGPDLVTHNIVLSAYKSGRQYSKALSYFELMKGAKVRPDTTTFNIIIYCLSKLGQS 167

Query: 252 KDLERIWATVQE-----LPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKAT-E 305
                ++ +++E      P+V + + ++ + +     +  RA     E    + LK    
Sbjct: 168 SQALDLFNSMREKRAECRPDVVTFTSIMHLYSVKGEIENCRAV---FEAMVAEGLKPNIV 224

Query: 306 QYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELG 365
            YN+++  Y  +G    A  +L ++  NG  P+ ++Y  L     +S    +  KA E+ 
Sbjct: 225 SYNALMGAYAVHGMSGTALSVLGDIKQNGIIPDVVSYTCLLNSYGRS---RQPGKAKEV- 280

Query: 366 MKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKA 425
              +  +K R   P + T  ++I+ +   G +  A  +F ++++           TL+ A
Sbjct: 281 --FLMMRKERRK-PNVVTYNALIDAYGSNGFLAEAVEIFRQMEQDGIKPNVVSVCTLLAA 337

Query: 426 YVKAK 430
             ++K
Sbjct: 338 CSRSK 342


>gi|449444190|ref|XP_004139858.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Cucumis sativus]
 gi|449530677|ref|XP_004172320.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Cucumis sativus]
          Length = 839

 Score = 78.6 bits (192), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 88/371 (23%), Positives = 151/371 (40%), Gaps = 22/371 (5%)

Query: 94  NELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNIL 153
           N   +N ++    +KG ++ +   M  +   G       +  LII +   G       + 
Sbjct: 201 NLFTFNAMIKILCNKGKVQEAELIMGHIFHYGACPDTFTYTSLIIGHCKNGNLDLAFEMF 260

Query: 154 RQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVA 213
            +M  D   P+  T+  L+    ++  +E  M +  +M    +EP   +Y I   +   A
Sbjct: 261 DRMVKDGCDPNSVTYSALINGLCSEGRLEEAMDMLEEMIDKGIEPTVHAYTIPIVSLCDA 320

Query: 214 RLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPN---VRSK 270
                A   +  ++K   G N  T   LI   G    GK    I    + L +     + 
Sbjct: 321 GRSCEAVKLLGKMKKRGCGPNVQTYTALI--SGLSRDGKFEVAIGVYHKMLADGLVPTAV 378

Query: 271 SYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEM 330
           +Y   I       +   A  ++  M S   L  TE YN +I  +C  G+I KA+ +  +M
Sbjct: 379 TYSALINQLYVEGRFETALTIFEWMLSHDSLPNTETYNVIIKGFCSIGYIQKATAIFDQM 438

Query: 331 SMNGCKPNAITYRHLALGCFKSNLVEEGFKALEL----GMKLITTKKVRSSTPWLETTLS 386
              G  PN ITY  +    FK   +    + LE+    G+KL T         W  T  +
Sbjct: 439 LKAGPSPNVITYNIIIHIYFKQGYMNNAMRLLEMMKGNGLKLDT---------W--TYAN 487

Query: 387 IIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVK-AKINDP-NLLRRMILGG 444
           +I  F+  G + +A +LF E+ +   +     YN +I  Y+  AK++D   L  +M+  G
Sbjct: 488 LISGFSRGGKLEHAFSLFNEMVEHGISPNVVTYNAIINGYLTVAKVDDALALFWKMVESG 547

Query: 445 ARPDAETYSLL 455
             P + TY+++
Sbjct: 548 NVPSSGTYNMM 558



 Score = 62.4 bits (150), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 77/331 (23%), Positives = 129/331 (38%), Gaps = 16/331 (4%)

Query: 132 VFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDM 191
            +N +I    S G  +    I  QM     +P+V T++I++ I      +   M++   M
Sbjct: 414 TYNVIIKGFCSIGYIQKATAIFDQMLKAGPSPNVITYNIIIHIYFKQGYMNNAMRLLEMM 473

Query: 192 KRSEVEPNEVSYCILATAHA-VARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAK 250
           K + ++ +  +Y  L +  +   +L      + E +E  ++  N  T + +I  Y  +AK
Sbjct: 474 KGNGLKLDTWTYANLISGFSRGGKLEHAFSLFNEMVEHGIS-PNVVTYNAIINGYLTVAK 532

Query: 251 GKD-LERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNS 309
             D L   W  V+      S +Y + I  F +  ++S AE    +M     L     Y S
Sbjct: 533 VDDALALFWKMVESGNVPSSGTYNMMISGFSKTNRISEAENFCGKMVKQGLLPNVITYTS 592

Query: 310 VISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLI 369
            I   CKNG    A  +  EM      PN  TY  L  G  +    E+  + L+ G +  
Sbjct: 593 FIDGLCKNGRTSLAFKIFHEMKKRDYFPNLCTYSSLIDGLCQEGQAEDAERLLDDGCE-- 650

Query: 370 TTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKA 429
                    P ++T  +++     KG    A+ L E +KK        +Y  L+    K 
Sbjct: 651 ---------PNVDTYTTLVRGLCGKGRCYEADQLVESMKKKGLQPSEEIYRALLVGQCKN 701

Query: 430 KINDPNL--LRRMILGGARPDAETYSLLKLA 458
              +  L     M+  G +P    Y  L  A
Sbjct: 702 LEVESALKIFDSMVTTGFQPCLSDYKALICA 732


>gi|255581046|ref|XP_002531339.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223529061|gb|EEF31046.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 630

 Score = 78.6 bits (192), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 94/442 (21%), Positives = 178/442 (40%), Gaps = 97/442 (21%)

Query: 33  INRLRKLQLNKRALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQGEKLFCCIPKDY 92
           ++ LR+      AL ++ W  ++  +RP    Y  +L             KL      + 
Sbjct: 58  LDTLRRQNDETAALRLLSWASKQPNFRPNSSIYEEILR------------KLGKVGSFNS 105

Query: 93  QNELLYNNLVIAC-LDKGVIKLSLEYMKKMRV--------------LGHSISYLVFNRLI 137
             ++L     + C +D+GV+ + ++   K  +               G ++  L++N L+
Sbjct: 106 MKDILQEMKGLDCQIDRGVLLIFIDSYAKFELYEEILCIVEVMEVEFGLALDTLLYNFLL 165

Query: 138 ILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVE 197
            +     + K + N+   M +  + P VSTF+IL+K     H I   + V  +M    + 
Sbjct: 166 NVLVDGNKLKLVENVHSTMVSKGIKPDVSTFNILIKALCKAHQIRPAILVMEEMSSYGLV 225

Query: 198 PNEVSYCILATAHA----VARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKD 253
           P+E ++  L         +   + V E  ++A      G   + + V ++++G+  +G+ 
Sbjct: 226 PDEKTFTTLMQGFIEEGNMDGAFRVKEQMLDA------GCPVTNVTVNVLVHGFCKEGR- 278

Query: 254 LERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISV 313
           +E   + + E+ N     + +AI             EL+ EM++         YN +I  
Sbjct: 279 IEEALSFIDEMSN--EGKHTMAI-------------ELYNEMKNKGCQPDEFTYNMLIDS 323

Query: 314 YCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKK 373
            C  G + +A GLL+EM ++GC  N ITY  L  G  K+  +EE                
Sbjct: 324 LCYRGKLQEALGLLREMEISGCARNVITYNTLIDGFCKNKKIEE---------------- 367

Query: 374 VRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAK--I 431
                                     AE +F++++    ++ +  YNTLI    K++   
Sbjct: 368 --------------------------AEEIFDQMEIQGLSRNSVTYNTLIDGLCKSRRVQ 401

Query: 432 NDPNLLRRMILGGARPDAETYS 453
               L+ +MI+ G +PD  TY+
Sbjct: 402 EAAQLMDQMIMEGLKPDKFTYN 423



 Score = 65.1 bits (157), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 58/245 (23%), Positives = 114/245 (46%), Gaps = 14/245 (5%)

Query: 185 MKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIIL 244
           +++Y++MK    +P+E +Y +L  +         A   +  +E S    N  T + LI  
Sbjct: 299 IELYNEMKNKGCQPDEFTYNMLIDSLCYRGKLQEALGLLREMEISGCARNVITYNTLIDG 358

Query: 245 YGYLAKGKDLERIWAT--VQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEM--QSVKQ 300
           +    K ++ E I+    +Q L    S +Y   I+   +  +V  A +L  +M  + +K 
Sbjct: 359 FCKNKKIEEAEEIFDQMEIQGLSR-NSVTYNTLIDGLCKSRRVQEAAQLMDQMIMEGLKP 417

Query: 301 LKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFK 360
            K T  YNS+++ +C+ G I KA+ +++ M+ NGC+P+ +TY  L  G  K+  V     
Sbjct: 418 DKFT--YNSMLTYFCREGDIQKAADIVQTMTSNGCEPDIVTYGTLIGGLCKAGRV----- 470

Query: 361 ALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYN 420
             E+  +L+ + +++           +I+   ++     A  LF E+++   T   F Y 
Sbjct: 471 --EVASRLLRSIQLKGMVLTPHAYNPVIQALFKRKRTKEAMRLFREMEEKGNTPDAFTYK 528

Query: 421 TLIKA 425
            + + 
Sbjct: 529 IVFRG 533



 Score = 45.8 bits (107), Expect = 0.048,   Method: Compositional matrix adjust.
 Identities = 50/244 (20%), Positives = 101/244 (41%), Gaps = 13/244 (5%)

Query: 107 DKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVS 166
           ++G   +++E   +M+  G       +N LI      G+ +    +LR+M+    A +V 
Sbjct: 291 NEGKHTMAIELYNEMKNKGCQPDEFTYNMLIDSLCYRGKLQEALGLLREMEISGCARNVI 350

Query: 167 TFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVAR-LYTVAETYVEA 225
           T++ L+     +  IE   +++  M+   +  N V+Y  L      +R +   A+   + 
Sbjct: 351 TYNTLIDGFCKNKKIEEAEEIFDQMEIQGLSRNSVTYNTLIDGLCKSRRVQEAAQLMDQM 410

Query: 226 LEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQEL------PNVRSKSYVLAIEAF 279
           + + +  + ++   +L     Y  +  D+++    VQ +      P++   +Y   I   
Sbjct: 411 IMEGLKPDKFTYNSMLT----YFCREGDIQKAADIVQTMTSNGCEPDI--VTYGTLIGGL 464

Query: 280 GRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNA 339
            +  +V  A  L   +Q    +     YN VI    K     +A  L +EM   G  P+A
Sbjct: 465 CKAGRVEVASRLLRSIQLKGMVLTPHAYNPVIQALFKRKRTKEAMRLFREMEEKGNTPDA 524

Query: 340 ITYR 343
            TY+
Sbjct: 525 FTYK 528


>gi|152717462|dbj|BAF73723.1| pentatricopeptide repeat protein [Raphanus sativus]
          Length = 687

 Score = 78.6 bits (192), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 107/435 (24%), Positives = 178/435 (40%), Gaps = 61/435 (14%)

Query: 30  FHSINRLRKLQLNKRALEVMEWVIRERPYRPKELDYSYLLEFTIK----NHGISQGEKLF 85
           FH I  L        A+++   ++R RP  P  +D+  L+   ++    +  IS  +K+ 
Sbjct: 54  FHEIKGLED------AIDLFSDMLRSRPL-PSVVDFCKLMGVVVRMERPDLVISLYQKM- 105

Query: 86  CCIPKDYQNELLYNNLVIACL-DKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPG 144
               K  + ++    ++I C      +  +L    K+  LG     + FN L+       
Sbjct: 106 --ERKQIRCDIYSFTILIKCFCSCSKLPFALSTFGKITKLGLHPDVVTFNTLLHGLCVED 163

Query: 145 RRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYC 204
           R     N+  QM      P+V TF  LM     +  I   + +   M    ++P +++Y 
Sbjct: 164 RVSEALNLFHQMFETTCRPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITY- 222

Query: 205 ILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQEL 264
                           T V+ + K   G+  S LD+L          + +E I   +   
Sbjct: 223 ---------------GTIVDGMCK--IGDTVSALDLL----------RKMEEISHII--- 252

Query: 265 PNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKAS 324
           PNV   S +  I++  +  + S A+ L+ EMQ          YNS+I  +C +G    A 
Sbjct: 253 PNVVIYSAI--IDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVGFCSSGRWSDAE 310

Query: 325 GLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEG--FKALELGMKLITTKKVRSSTPWLE 382
            LL+EM      P+ +TY  L      +  V+EG  F+A EL  +++     R   P   
Sbjct: 311 QLLQEMLERKISPDVVTYNALI-----NAFVKEGKFFEAEELYDEMLP----RGIIPNTI 361

Query: 383 TTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAK-INDP-NLLRRM 440
           T  S+I+ F ++  +  AE++F  +     +     +NTLI  Y  AK I+D   LL  M
Sbjct: 362 TYSSMIDGFCKQNRLDAAEHMFYLMATKGCSPNLITFNTLIDGYCGAKRIDDGMELLHEM 421

Query: 441 ILGGARPDAETYSLL 455
              G   D  TY+ L
Sbjct: 422 TETGLVADTTTYNTL 436



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 70/318 (22%), Positives = 122/318 (38%), Gaps = 19/318 (5%)

Query: 131 LVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSD 190
             +N +I+   S GR      +L++M   K++P V T++ L+     +       ++Y +
Sbjct: 291 FTYNSMIVGFCSSGRWSDAEQLLQEMLERKISPDVVTYNALINAFVKEGKFFEAEELYDE 350

Query: 191 MKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAK 250
           M    + PN ++Y  +            AE     +       N  T + LI  Y    +
Sbjct: 351 MLPRGIIPNTITYSSMIDGFCKQNRLDAAEHMFYLMATKGCSPNLITFNTLIDGYCGAKR 410

Query: 251 GKDLERIWATVQELPNV-RSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNS 309
             D   +   + E   V  + +Y   I  F  +  ++ A +L  EM S          ++
Sbjct: 411 IDDGMELLHEMTETGLVADTTTYNTLIHGFYLVGDLNAALDLLQEMISSGLCPDIVTCDT 470

Query: 310 VISVYCKNGFIDKASGLLKEMS-----------MNGCKPNAITYRHLALGCFKSNLVEEG 358
           ++   C NG +  A  + K M             NG +P+  TY  L      S L+ EG
Sbjct: 471 LLDGLCDNGKLKDALEMFKVMQKSKKDLDASHPFNGVEPDVQTYNILI-----SGLINEG 525

Query: 359 FKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFV 418
            K LE   +L      R   P   T  S+I+   ++  +  A  +F+ +   +++     
Sbjct: 526 -KFLE-AEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFDSMGSKSFSPNVVT 583

Query: 419 YNTLIKAYVKAKINDPNL 436
           + TLI  Y KA   D  L
Sbjct: 584 FTTLINGYCKAGRVDDGL 601



 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 70/350 (20%), Positives = 142/350 (40%), Gaps = 26/350 (7%)

Query: 98  YNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMK 157
           YN L+ A + +G    + E   +M   G   + + ++ +I       R     ++   M 
Sbjct: 328 YNALINAFVKEGKFFEAEELYDEMLPRGIIPNTITYSSMIDGFCKQNRLDAAEHMFYLMA 387

Query: 158 ADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYT 217
               +P++ TF+ L+        I+  M++  +M  + +  +  +Y  L     +     
Sbjct: 388 TKGCSPNLITFNTLIDGYCGAKRIDDGMELLHEMTETGLVADTTTYNTLIHGFYLVGDLN 447

Query: 218 VAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQEL------------- 264
            A   ++ +  S    +  T D L+       K KD   ++  +Q+              
Sbjct: 448 AALDLLQEMISSGLCPDIVTCDTLLDGLCDNGKLKDALEMFKVMQKSKKDLDASHPFNGV 507

Query: 265 -PNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKA 323
            P+V  ++Y + I       +   AEEL+ EM     +  T  Y+S+I   CK   +D+A
Sbjct: 508 EPDV--QTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEA 565

Query: 324 SGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKAL-ELGMKLITTKKVRSSTPWLE 382
           + +   M      PN +T+  L  G  K+  V++G +   E+G + I    +        
Sbjct: 566 TQMFDSMGSKSFSPNVVTFTTLINGYCKAGRVDDGLELFCEMGRRGIVANAI-------- 617

Query: 383 TTLSIIEIFAEKGDVGNAENLFEELKKAN-YTKYTFVYNTLIKAYVKAKI 431
           T +++I  F + G++  A ++F+E+  +  Y     + N L   + K ++
Sbjct: 618 TYITLICGFRKVGNINGALDIFQEMISSGVYPDTITIRNMLTGLWSKEEL 667



 Score = 53.5 bits (127), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 64/319 (20%), Positives = 129/319 (40%), Gaps = 70/319 (21%)

Query: 172 MKIEANDHNIEGL---MKVYSDMKRSEVEPNEVSYC-ILATAHAVARLYTVAETYVEALE 227
           +K+++  H I+GL   + ++SDM RS   P+ V +C ++     + R   V   Y + +E
Sbjct: 48  LKLQSGFHEIKGLEDAIDLFSDMLRSRPLPSVVDFCKLMGVVVRMERPDLVISLY-QKME 106

Query: 228 KSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSR 287
           +     +  +  +LI             + + +  +LP         A+  FG+I ++  
Sbjct: 107 RKQIRCDIYSFTILI-------------KCFCSCSKLP--------FALSTFGKITKLGL 145

Query: 288 AEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLAL 347
             ++               +N+++   C    + +A  L  +M    C+PN +T+  L  
Sbjct: 146 HPDVV-------------TFNTLLHGLCVEDRVSEALNLFHQMFETTCRPNVVTFTTLMN 192

Query: 348 G-CFKSNLV----------EEGFKALEL-------GMKLITT-----------KKVRSST 378
           G C +  +V          E+G +  ++       GM  I             +++    
Sbjct: 193 GLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDGMCKIGDTVSALDLLRKMEEISHII 252

Query: 379 PWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAK--INDPNL 436
           P +    +II+   + G   +A+NLF E+++       F YN++I  +  +    +   L
Sbjct: 253 PNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVGFCSSGRWSDAEQL 312

Query: 437 LRRMILGGARPDAETYSLL 455
           L+ M+     PD  TY+ L
Sbjct: 313 LQEMLERKISPDVVTYNAL 331


>gi|357130032|ref|XP_003566662.1| PREDICTED: protein Rf1, mitochondrial-like [Brachypodium
           distachyon]
          Length = 859

 Score = 78.6 bits (192), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 89/405 (21%), Positives = 175/405 (43%), Gaps = 30/405 (7%)

Query: 44  RALEVMEWVIR---ERPYRPKELDYSYLLE-FTIKNHGISQGEKLF------CCIPKDYQ 93
           RA++  E V+R   ++   P  L Y+ ++  ++   H   +  K+F        IP    
Sbjct: 313 RAMDKAELVLRQMVDKGVEPDGLTYTAIIHGYSCSGH-WKESAKMFRKMTSKGLIP---- 367

Query: 94  NELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNIL 153
             + +N+ + +    G  K + E  + M   GH    + ++ L+   ++ GR   + N+ 
Sbjct: 368 GIVTFNSFMSSLCKHGRSKDAEEIFQYMTTKGHMPDLVSYSILLHGYATEGRFADMNNLF 427

Query: 154 RQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHA-V 212
             M    +  +   F+IL+   A    ++  M V+++M+   V P+ V+Y  L +A   +
Sbjct: 428 HSMADKGIVANCHCFNILISAHAKRGMMDEAMLVFTEMQGQGVRPDVVTYSTLISAFCRM 487

Query: 213 ARLYTVAETYVEALEKSMTGNN--WSTLDVLIILYGYLAKGKDL-ERIWATVQELPNVRS 269
            RL    E + + +   +  N   + +L     ++G L K K+L   + +     PN+  
Sbjct: 488 GRLADAMEKFSQMISIGLEPNTVVYHSLIHGFCMHGDLVKAKELVSEMMSKGIPRPNIVF 547

Query: 270 KSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKE 329
            S +  I +     +V  A +++  +  +        +NS+I  YC  G ++KA G+L  
Sbjct: 548 FSSI--IHSLCNEGRVMDAHDVFNLVIHIGDRPTIVTFNSLIDGYCLVGKMEKAFGVLDA 605

Query: 330 MSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSII- 388
           M   G +P+ +TY  L  G  KS  +++G     +  + +  KKV+ +T     T SI+ 
Sbjct: 606 MVSVGIEPDVVTYNTLVSGYCKSGKIDDGL----ILFREMLHKKVKPTT----VTYSIVL 657

Query: 389 EIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKIND 433
           +     G    A+ +F E+  +        Y  L+K   +  + D
Sbjct: 658 DGLFHAGRTSAAKKMFHEMIDSGTAVDIDTYKILLKGLCRNDLTD 702



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 81/365 (22%), Positives = 150/365 (41%), Gaps = 17/365 (4%)

Query: 98  YNNLVIA-CLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQM 156
           YN++V A C  + + K  L  +++M   G     L +  +I   S  G  K    + R+M
Sbjct: 302 YNSIVDALCKARAMDKAEL-VLRQMVDKGVEPDGLTYTAIIHGYSCSGHWKESAKMFRKM 360

Query: 157 KADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLY 216
            +  + P + TF+  M         +   +++  M      P+ VSY IL   +A    +
Sbjct: 361 TSKGLIPGIVTFNSFMSSLCKHGRSKDAEEIFQYMTTKGHMPDLVSYSILLHGYATEGRF 420

Query: 217 TVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQEL---PNVRSKSYV 273
                   ++       N    ++LI  +       +   ++  +Q     P+V   +Y 
Sbjct: 421 ADMNNLFHSMADKGIVANCHCFNILISAHAKRGMMDEAMLVFTEMQGQGVRPDV--VTYS 478

Query: 274 LAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMN 333
             I AF R+ +++ A E + +M S+     T  Y+S+I  +C +G + KA  L+ EM   
Sbjct: 479 TLISAFCRMGRLADAMEKFSQMISIGLEPNTVVYHSLIHGFCMHGDLVKAKELVSEMMSK 538

Query: 334 GC-KPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFA 392
           G  +PN + +  +         V +      L + +          P + T  S+I+ + 
Sbjct: 539 GIPRPNIVFFSSIIHSLCNEGRVMDAHDVFNLVIHI-------GDRPTIVTFNSLIDGYC 591

Query: 393 EKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKA-KINDPNLL-RRMILGGARPDAE 450
             G +  A  + + +           YNTL+  Y K+ KI+D  +L R M+    +P   
Sbjct: 592 LVGKMEKAFGVLDAMVSVGIEPDVVTYNTLVSGYCKSGKIDDGLILFREMLHKKVKPTTV 651

Query: 451 TYSLL 455
           TYS++
Sbjct: 652 TYSIV 656



 Score = 55.8 bits (133), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 43/155 (27%), Positives = 75/155 (48%), Gaps = 8/155 (5%)

Query: 304 TEQYNSVISVYCKNGFIDKASG-LLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKAL 362
           T + N+ +   C     D+A   LL  MS  GC PNAI+Y  +       +  +E   AL
Sbjct: 191 TIEANTFLKCLCHAKRTDEAVDVLLHRMSDLGCVPNAISYNTVIKSLCGDSRSQE---AL 247

Query: 363 ELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTL 422
           ++  ++   K+    +P + +  ++I  F ++G+V  A NL  E+ +         YN++
Sbjct: 248 DMVQRM--AKEGGRCSPDVVSFNTVIHGFFKQGEVSKACNLINEMVQKGVEPDVVTYNSI 305

Query: 423 IKAYVKAKINDPN--LLRRMILGGARPDAETYSLL 455
           + A  KA+  D    +LR+M+  G  PD  TY+ +
Sbjct: 306 VDALCKARAMDKAELVLRQMVDKGVEPDGLTYTAI 340



 Score = 46.2 bits (108), Expect = 0.040,   Method: Compositional matrix adjust.
 Identities = 87/423 (20%), Positives = 156/423 (36%), Gaps = 90/423 (21%)

Query: 111 IKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQM--KADKVAPHVSTF 168
           + + L  M  +  + ++ISY   N +I       R +   +++++M  +  + +P V +F
Sbjct: 211 VDVLLHRMSDLGCVPNAISY---NTVIKSLCGDSRSQEALDMVQRMAKEGGRCSPDVVSF 267

Query: 169 HILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEK 228
           + ++        +     + ++M +  VEP+ V+Y  +  A   AR    AE  +  +  
Sbjct: 268 NTVIHGFFKQGEVSKACNLINEMVQKGVEPDVVTYNSIVDALCKARAMDKAELVLRQMVD 327

Query: 229 SMTGNNWSTLDVLIILYGYLAKG------------------------------------- 251
              G     L    I++GY   G                                     
Sbjct: 328 K--GVEPDGLTYTAIIHGYSCSGHWKESAKMFRKMTSKGLIPGIVTFNSFMSSLCKHGRS 385

Query: 252 KDLERIW---ATVQELPNVRSKSYVLAIEAF-GRIAQVS--------------------- 286
           KD E I+    T   +P++ S S +L   A  GR A ++                     
Sbjct: 386 KDAEEIFQYMTTKGHMPDLVSYSILLHGYATEGRFADMNNLFHSMADKGIVANCHCFNIL 445

Query: 287 -----------RAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGC 335
                       A  ++ EMQ          Y+++IS +C+ G +  A     +M   G 
Sbjct: 446 ISAHAKRGMMDEAMLVFTEMQGQGVRPDVVTYSTLISAFCRMGRLADAMEKFSQMISIGL 505

Query: 336 KPNAITYRHLALG-CFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEK 394
           +PN + Y  L  G C   +LV    KA EL  ++++    R +  +     SII     +
Sbjct: 506 EPNTVVYHSLIHGFCMHGDLV----KAKELVSEMMSKGIPRPNIVFFS---SIIHSLCNE 558

Query: 395 GDVGNAENLFEELKKANYTKYTFVYNTLIKAY-VKAKINDP-NLLRRMILGGARPDAETY 452
           G V +A ++F  +           +N+LI  Y +  K+     +L  M+  G  PD  TY
Sbjct: 559 GRVMDAHDVFNLVIHIGDRPTIVTFNSLIDGYCLVGKMEKAFGVLDAMVSVGIEPDVVTY 618

Query: 453 SLL 455
           + L
Sbjct: 619 NTL 621



 Score = 40.0 bits (92), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 46/256 (17%), Positives = 106/256 (41%), Gaps = 9/256 (3%)

Query: 88  IPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRK 147
           IP+   N + +++++ +  ++G +  + +    +  +G   + + FN LI      G+ +
Sbjct: 540 IPR--PNIVFFSSIIHSLCNEGRVMDAHDVFNLVIHIGDRPTIVTFNSLIDGYCLVGKME 597

Query: 148 TIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILA 207
               +L  M +  + P V T++ L+        I+  + ++ +M   +V+P  V+Y I+ 
Sbjct: 598 KAFGVLDAMVSVGIEPDVVTYNTLVSGYCKSGKIDDGLILFREMLHKKVKPTTVTYSIVL 657

Query: 208 TAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNV 267
                A   + A+     +  S T  +   +D   IL   L +    +       +L  +
Sbjct: 658 DGLFHAGRTSAAKKMFHEMIDSGTAVD---IDTYKILLKGLCRNDLTDEAITLFHKLGAM 714

Query: 268 RSKSYVL----AIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKA 323
             K  +      I A  ++ +   A +L+  + +   +     Y  +I    K G +++A
Sbjct: 715 DCKFDITILNTVINALYKVRRREEANDLFAAISTSGLVPNVSTYGVMIHNLLKEGSVEEA 774

Query: 324 SGLLKEMSMNGCKPNA 339
             +   M  +GC P++
Sbjct: 775 DTMFSSMEKSGCAPSS 790


>gi|414586983|tpg|DAA37554.1| TPA: hypothetical protein ZEAMMB73_139718 [Zea mays]
          Length = 423

 Score = 78.6 bits (192), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 77/339 (22%), Positives = 142/339 (41%), Gaps = 27/339 (7%)

Query: 12  SAFQSWMREGFPVHRGEIFHSINRLRKLQLNKRALEVMEWVIRERPYRPKELDYSYLLEF 71
           +A + W  EG      E+      L +++  K ALEV +W+         E DY   ++ 
Sbjct: 72  AALEKWSSEGRDAPTAELRRIARDLTRVRRYKHALEVADWMKTHHESDLSENDYGMRIDL 131

Query: 72  TIKNHGISQGEKLFCCIPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYL 131
             K  G S  E  F  +P   ++   Y  L+ +     +   +    ++M+     +  L
Sbjct: 132 ITKVFGASAAEDFFEKLPPGAKSLEAYTALLHSYGRSKMTDRAERLFERMKDASLPMDAL 191

Query: 132 VFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDM 191
           V+N ++ L  S G    +  +  ++K   V+P + T+++     A   ++EG   V  +M
Sbjct: 192 VYNEMMTLYISVGELGKVEAVAEELKRQNVSPDLFTYNLRASAAAASMDLEGFRAVLDEM 251

Query: 192 KR---SEVEPNEVSYCILATAHAVAR--LYTVAETYVEALEKSMTGNNWSTLDVLIILYG 246
            R   S  E     Y  LA+ +  A   L +V    VEA E  ++   W T D L+IL+ 
Sbjct: 252 SRDPKSSTEGGWALYRDLASVYVDAGQLLGSVNSPPVEAGEARISQREWITYDFLVILHA 311

Query: 247 YLAKGKDLERIWATV--------QELPNVRSKSYVLAIEAF---GRIAQVSRAEELWLEM 295
            L + + +  IW ++        Q+   + S++YV  + ++   GR+       + W   
Sbjct: 312 GLGRPERIRDIWRSMVATSQSQSQQQQRMTSRNYVCVVSSYLACGRLEDAGEVVDQW--- 368

Query: 296 QSVKQLKATE----QYNSVISVYCKNGFIDKASGLLKEM 330
              ++ KA E      N ++    + G  D A+G  +E+
Sbjct: 369 ---QRSKAPEFDVSACNRLLDALLRAGLAD-AAGRFREL 403



 Score = 39.3 bits (90), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 30/138 (21%), Positives = 64/138 (46%), Gaps = 9/138 (6%)

Query: 227 EKSMTGNNWST-LDVLIILYGYLAKGKDLERIWATVQELPNVRS-KSYVLAIEAFGRIAQ 284
           E  ++ N++   +D++  ++G  A     E++       P  +S ++Y   + ++GR   
Sbjct: 117 ESDLSENDYGMRIDLITKVFGASAAEDFFEKL------PPGAKSLEAYTALLHSYGRSKM 170

Query: 285 VSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRH 344
             RAE L+  M+          YN ++++Y   G + K   + +E+      P+  TY +
Sbjct: 171 TDRAERLFERMKDASLPMDALVYNEMMTLYISVGELGKVEAVAEELKRQNVSPDLFTY-N 229

Query: 345 LALGCFKSNLVEEGFKAL 362
           L      +++  EGF+A+
Sbjct: 230 LRASAAAASMDLEGFRAV 247


>gi|297737369|emb|CBI26570.3| unnamed protein product [Vitis vinifera]
          Length = 1042

 Score = 78.6 bits (192), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 93/423 (21%), Positives = 176/423 (41%), Gaps = 56/423 (13%)

Query: 43  KRALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQGEKLFCCIPKDYQNEL-LYNNL 101
           +RALEV EW+     Y P     + +L    K +  +   ++F        N + +YN +
Sbjct: 144 QRALEVYEWLNLRHWYSPNARMLATILSVLGKANQEALAVEIFARAEAASGNTVQVYNAM 203

Query: 102 VIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKT--IPNILRQMKAD 159
           +      G      E +  MR  G     + FN LI      G   T     +L +++  
Sbjct: 204 MGVYARTGRFTKVQELLDLMRSRGCEPDLVSFNTLINARLKSGTMVTNLAIELLNEVRRS 263

Query: 160 KVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVA 219
            + P + T++ L+   + + N+E  +KVY+DM     +P+  +Y                
Sbjct: 264 GIQPDIITYNTLISACSRESNLEEAVKVYNDMVAHRCQPDLWTY---------------- 307

Query: 220 ETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQE---LPNVRSKSYVLAI 276
                              + +I +YG     ++  R++  ++    LP+  + +Y   +
Sbjct: 308 -------------------NAMISVYGRCGMSREAGRLFKDLESKGFLPD--AVTYNSLL 346

Query: 277 EAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCK 336
            AF R   V + +E+  +M  +   K    YN++I +Y K G  D A  L  +M ++G  
Sbjct: 347 YAFAREGNVDKVKEICEDMVKMGFGKDEMTYNTIIHMYGKRGQHDLAFQLYSDMKLSGRS 406

Query: 337 PNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGD 396
           P+A+TY  L     K+N+++E  +     M  +   +V+   P L T  ++I  +A+ G 
Sbjct: 407 PDAVTYTVLIDSLGKANMIKEAAEV----MSEMLNARVK---PTLRTFSALICGYAKAGK 459

Query: 397 VGNAENLFEELK----KANYTKYTFVYNTLIKAYVKAKINDPNLLRRMILGGARPDAETY 452
              AE  F+ +     K ++  Y+ + + L++     K     L + M+L   +PD   Y
Sbjct: 460 RVEAEETFDCMLRSGIKPDHLAYSVMLDILLRFNESGKAM--KLYQEMVLHSFKPDHALY 517

Query: 453 SLL 455
            ++
Sbjct: 518 EVM 520



 Score = 43.5 bits (101), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 79/389 (20%), Positives = 149/389 (38%), Gaps = 37/389 (9%)

Query: 94  NELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNIL 153
           + + YN+L+ A   +G +    E  + M  +G     + +N +I +    G+      + 
Sbjct: 338 DAVTYNSLLYAFAREGNVDKVKEICEDMVKMGFGKDEMTYNTIIHMYGKRGQHDLAFQLY 397

Query: 154 RQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVA 213
             MK    +P   T+ +L+      + I+   +V S+M  + V+P   ++  L   +A A
Sbjct: 398 SDMKLSGRSPDAVTYTVLIDSLGKANMIKEAAEVMSEMLNARVKPTLRTFSALICGYAKA 457

Query: 214 -RLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSKSY 272
            +     ET+   L   +  ++ +   +L IL  +   GK ++     V          Y
Sbjct: 458 GKRVEAEETFDCMLRSGIKPDHLAYSVMLDILLRFNESGKAMKLYQEMVLHSFKPDHALY 517

Query: 273 VLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNS--VISVYCKNGFIDKASGLLKEM 330
            + +   G+    +R E++    + VK ++     NS  + S+  K    D A+ +L+  
Sbjct: 518 EVMLRVLGK---ENREEDV---HKVVKDMEELCGMNSQVICSILVKGECFDHAANMLRLA 571

Query: 331 SMNGCKPNAI-TYRHLALGCFKSNLVE----------EGFKALELGM-----------KL 368
              GC+ +     R   L C    L E            F  + + M           KL
Sbjct: 572 ISQGCELDQYGKARDFGLFCGTEELFEGLLSKECKLDRSFYHIMMKMFRNSGNHSKAEKL 631

Query: 369 ITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVK 428
           +   K     P + T   ++  ++  G    AE + + LK       T  Y+++I AY+K
Sbjct: 632 LGVMKEAGVEPTIATMHLLMVSYSGSGQPEEAEKVLDNLKVEGLPLSTLPYSSVIDAYLK 691

Query: 429 AKINDPNL----LRRMILGGARPDAETYS 453
               D N+    L  M   G  PD   ++
Sbjct: 692 N--GDHNVAIQKLMEMKKDGLEPDHRIWT 718


>gi|302821741|ref|XP_002992532.1| hypothetical protein SELMODRAFT_135367 [Selaginella moellendorffii]
 gi|300139734|gb|EFJ06470.1| hypothetical protein SELMODRAFT_135367 [Selaginella moellendorffii]
          Length = 759

 Score = 78.6 bits (192), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 82/368 (22%), Positives = 147/368 (39%), Gaps = 51/368 (13%)

Query: 94  NELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNIL 153
           N  +Y++L+ A    G +  ++E  + M+V+    + +V+N +I   S  G   T   I 
Sbjct: 154 NVFVYSSLICAYGRSGKLAKAVEIFEAMKVVCKP-NLVVYNAVIDACSKGGDYPTALRIF 212

Query: 154 RQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVA 213
           R+M    ++P   TF+ L+      +  E   +++++M+   +  ++V+Y  L   +   
Sbjct: 213 REMLEQGMSPDRITFNTLISAAGRANRWEECDRIFAEMEERGIARDDVTYNTLIATYCRG 272

Query: 214 RLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSK--- 270
               +    +E + KS +G   S +    ++ GY   G   E I A  QE+ N   +   
Sbjct: 273 GQMHLGAALMETMAKS-SGIEPSVITYSTMIDGYAKLGLAHEAI-ALFQEMRNQNVEPDG 330

Query: 271 -SYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKE 329
             Y   ++   R+     A  +   M+     K    YN+++  Y K G   +A  LL+E
Sbjct: 331 ICYNTMVDIHARLGNFDEAHSIRRAMEEAGFAKDIVTYNALLDSYGKQGKFREAMSLLEE 390

Query: 330 MSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIE 389
           M   G  PN +TY                                           ++I+
Sbjct: 391 MKQRGASPNILTYS------------------------------------------ALID 408

Query: 390 IFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKINDP--NLLRRMILGGARP 447
            + + G   +A  LF+++KKA       +Y+TL+    K    D    LL  M   G RP
Sbjct: 409 AYCKHGFHRDAMALFQDVKKAGLQPDVVLYSTLVDGCCKNGSPDEALALLEEMADNGIRP 468

Query: 448 DAETYSLL 455
           +  TY+ L
Sbjct: 469 NVITYNSL 476



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 92/407 (22%), Positives = 165/407 (40%), Gaps = 52/407 (12%)

Query: 94  NELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNIL 153
           N ++YN ++ AC   G    +L   ++M   G S   + FN LI       R +    I 
Sbjct: 188 NLVVYNAVIDACSKGGDYPTALRIFREMLEQGMSPDRITFNTLISAAGRANRWEECDRIF 247

Query: 154 RQMKADKVAPHVSTFHIL----------------MKIEANDHNIEGLMKVYS-------- 189
            +M+   +A    T++ L                M+  A    IE  +  YS        
Sbjct: 248 AEMEERGIARDDVTYNTLIATYCRGGQMHLGAALMETMAKSSGIEPSVITYSTMIDGYAK 307

Query: 190 ------------DMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWST 237
                       +M+   VEP+ + Y  +   HA    +  A +   A+E++    +  T
Sbjct: 308 LGLAHEAIALFQEMRNQNVEPDGICYNTMVDIHARLGNFDEAHSIRRAMEEAGFAKDIVT 367

Query: 238 LDVLIILYGYLAKGKDLERIWATVQEL---PNVRSKSYVLAIEAFGRIAQVSRAEELWLE 294
            + L+  YG   K ++   +   +++    PN+ +  Y   I+A+ +      A  L+ +
Sbjct: 368 YNALLDSYGKQGKFREAMSLLEEMKQRGASPNILT--YSALIDAYCKHGFHRDAMALFQD 425

Query: 295 MQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHL--ALG--CF 350
           ++          Y++++   CKNG  D+A  LL+EM+ NG +PN ITY  L  A G  C 
Sbjct: 426 VKKAGLQPDVVLYSTLVDGCCKNGSPDEALALLEEMADNGIRPNVITYNSLLDAYGRQCL 485

Query: 351 KSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKA 410
              +V + F  L   +    T  ++ S    +   S+++   ++  V  A  +F E+ K 
Sbjct: 486 ---MVRKTFPKLRFFLLPRVTMLLKPSMQ--DDQQSLVDPKQKQALVLAAARVFREMAKN 540

Query: 411 NYTKYTFVYNTLIKAYVK-AKINDP-NLLRRMILGGARPDAETYSLL 455
                   +++++ A    A + D  NLL  M +   R    T+ LL
Sbjct: 541 GVKPNVVTFSSILNACSHCASVEDASNLLEAMRVFDGRVYGVTHGLL 587


>gi|224078588|ref|XP_002305565.1| predicted protein [Populus trichocarpa]
 gi|222848529|gb|EEE86076.1| predicted protein [Populus trichocarpa]
          Length = 757

 Score = 78.6 bits (192), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 88/372 (23%), Positives = 164/372 (44%), Gaps = 20/372 (5%)

Query: 92  YQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPN 151
           + ++  +N LV      G +K +LE M  M   G       +N LI      G       
Sbjct: 298 FPDKYTFNMLVNGLSKTGHVKHALEVMDMMLREGFDPDIYTYNSLISGLCKLGEVDEAVK 357

Query: 152 ILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHA 211
           +L QM     +P+  T++ ++     ++ +E   K+   +    + P+  +Y  L     
Sbjct: 358 VLNQMIERDCSPNTVTYNTIISTLCKENQVEEATKLALVLTGKGILPDVCTYNSLIQGLC 417

Query: 212 VARLYTVA-ETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSK 270
           ++R +TVA E Y E   K    + + T ++LI    +  K ++   +   ++     R+ 
Sbjct: 418 LSRNHTVAMELYKEMKTKGCHPDEF-TYNMLIDSLCFRGKLQEALNLLKEMEVSGCARNV 476

Query: 271 -SYVLAIEAFGRIAQVSRAEELW--LEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLL 327
            +Y   I+ F +  +++ AEE++  +E+Q V +   T  YN++I   CK+  +++AS L+
Sbjct: 477 ITYNTLIDGFCKNKRIAEAEEIFDQMELQGVSRNSVT--YNTLIDGLCKSERVEEASQLM 534

Query: 328 KEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSI 387
            +M M G +P+  TY  L     K+  +++          ++ T       P + T  ++
Sbjct: 535 DQMIMEGLRPDKFTYNSLLTYFCKAGDIKKA-------ADIVQTMASDGCEPDIVTYGTL 587

Query: 388 IEIFAEKGDVGNAENLFE--ELKKANYTKYTFVYNTLIKAYVKAKINDP--NLLRRMILG 443
           I    + G V  A  L    ++K  N T +   YN +I+A  + K +     L R MI  
Sbjct: 588 IAGLCKAGRVEAATKLLRTIQMKGINLTPH--AYNPVIQALFRRKRSKEAVRLFREMIEK 645

Query: 444 GARPDAETYSLL 455
              PDA TY ++
Sbjct: 646 AEAPDAVTYKIV 657



 Score = 72.4 bits (176), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 82/349 (23%), Positives = 148/349 (42%), Gaps = 41/349 (11%)

Query: 18  MREGFPVHRGEIFHSINRLRKLQLNKRALEVMEWVIRERPYRPKELDYSYLLEFTIKNHG 77
           +REGF   +      +N L K    K ALEVM+ ++RE                     G
Sbjct: 293 LREGFFPDKYTFNMLVNGLSKTGHVKHALEVMDMMLRE---------------------G 331

Query: 78  ISQGEKLFCCIPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLI 137
                      P  Y     YN+L+      G +  +++ + +M     S + + +N +I
Sbjct: 332 FD---------PDIYT----YNSLISGLCKLGEVDEAVKVLNQMIERDCSPNTVTYNTII 378

Query: 138 ILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVE 197
                  + +    +   +    + P V T++ L++      N    M++Y +MK     
Sbjct: 379 STLCKENQVEEATKLALVLTGKGILPDVCTYNSLIQGLCLSRNHTVAMELYKEMKTKGCH 438

Query: 198 PNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERI 257
           P+E +Y +L  +         A   ++ +E S    N  T + LI  +    +  + E I
Sbjct: 439 PDEFTYNMLIDSLCFRGKLQEALNLLKEMEVSGCARNVITYNTLIDGFCKNKRIAEAEEI 498

Query: 258 WATVQELPNV--RSKSYVLAIEAFGRIAQVSRAEELW--LEMQSVKQLKATEQYNSVISV 313
           +  + EL  V   S +Y   I+   +  +V  A +L   + M+ ++  K T  YNS+++ 
Sbjct: 499 FDQM-ELQGVSRNSVTYNTLIDGLCKSERVEEASQLMDQMIMEGLRPDKFT--YNSLLTY 555

Query: 314 YCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKAL 362
           +CK G I KA+ +++ M+ +GC+P+ +TY  L  G  K+  VE   K L
Sbjct: 556 FCKAGDIKKAADIVQTMASDGCEPDIVTYGTLIAGLCKAGRVEAATKLL 604



 Score = 62.0 bits (149), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 80/340 (23%), Positives = 138/340 (40%), Gaps = 48/340 (14%)

Query: 156 MKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHA---- 211
           M +  + P VSTF+IL+K     H I   + +  +M+   + P+E ++  +         
Sbjct: 186 MVSRGIRPDVSTFNILIKALCRAHQIRPAILLMEEMEDFGLLPDEKTFTTIMQGFIEEGN 245

Query: 212 VARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSK- 270
           +     V E  VEA      G   + + V +++ G+  +G+ +E     ++E+ ++R   
Sbjct: 246 LDGAMRVKEQMVEA------GCVVTNVTVNVLVNGFCKEGR-IEEALRFIEEM-SLREGF 297

Query: 271 -----SYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASG 325
                ++ + +    +   V  A E+   M           YNS+IS  CK G +D+A  
Sbjct: 298 FPDKYTFNMLVNGLSKTGHVKHALEVMDMMLREGFDPDIYTYNSLISGLCKLGEVDEAVK 357

Query: 326 LLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFK-ALEL-------------------- 364
           +L +M    C PN +TY  +     K N VEE  K AL L                    
Sbjct: 358 VLNQMIERDCSPNTVTYNTIISTLCKENQVEEATKLALVLTGKGILPDVCTYNSLIQGLC 417

Query: 365 -------GMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTF 417
                   M+L    K +   P   T   +I+    +G +  A NL +E++ +   +   
Sbjct: 418 LSRNHTVAMELYKEMKTKGCHPDEFTYNMLIDSLCFRGKLQEALNLLKEMEVSGCARNVI 477

Query: 418 VYNTLIKAYVKAK--INDPNLLRRMILGGARPDAETYSLL 455
            YNTLI  + K K       +  +M L G   ++ TY+ L
Sbjct: 478 TYNTLIDGFCKNKRIAEAEEIFDQMELQGVSRNSVTYNTL 517



 Score = 47.0 bits (110), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 60/278 (21%), Positives = 112/278 (40%), Gaps = 2/278 (0%)

Query: 92  YQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPN 151
           + +E  YN L+ +   +G ++ +L  +K+M V G + + + +N LI       R      
Sbjct: 438 HPDEFTYNMLIDSLCFRGKLQEALNLLKEMEVSGCARNVITYNTLIDGFCKNKRIAEAEE 497

Query: 152 ILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHA 211
           I  QM+   V+ +  T++ L+        +E   ++   M    + P++ +Y  L T   
Sbjct: 498 IFDQMELQGVSRNSVTYNTLIDGLCKSERVEEASQLMDQMIMEGLRPDKFTYNSLLTYFC 557

Query: 212 VARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQ-ELPNVRSK 270
            A     A   V+ +       +  T   LI       + +   ++  T+Q +  N+   
Sbjct: 558 KAGDIKKAADIVQTMASDGCEPDIVTYGTLIAGLCKAGRVEAATKLLRTIQMKGINLTPH 617

Query: 271 SYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGF-IDKASGLLKE 329
           +Y   I+A  R  +   A  L+ EM    +      Y  V    C+ G  I +A   + E
Sbjct: 618 AYNPVIQALFRRKRSKEAVRLFREMIEKAEAPDAVTYKIVFRGLCQGGGPIGEAVDFVME 677

Query: 330 MSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMK 367
           M   G  P   ++  LA G F   +V    K +++ M+
Sbjct: 678 MLERGYVPEFSSFYMLAEGLFSLAMVGTLIKLIDMVME 715


>gi|297606902|ref|NP_001059180.2| Os07g0213300 [Oryza sativa Japonica Group]
 gi|215767816|dbj|BAH00045.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|255677604|dbj|BAF21094.2| Os07g0213300 [Oryza sativa Japonica Group]
          Length = 677

 Score = 78.6 bits (192), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 99/374 (26%), Positives = 162/374 (43%), Gaps = 23/374 (6%)

Query: 100 NLVIACLDK-GVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSP--GRRKTIPNILRQM 156
           N++I CL K G    ++E    MR         V     I++S    G+ +    I   M
Sbjct: 155 NIIIHCLVKIGQCGEAIELFNSMRERRTKCPPDVVTYTSIMHSYCIYGQVENCKAIFDLM 214

Query: 157 KADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLY 216
            A+ V P++  ++ L+   A+       + +++ +K++ + P+ VSY  L  A+  +   
Sbjct: 215 VAEGVKPNIVAYNSLLGAYASRGMHREALAIFNLIKKNGLRPDIVSYTSLLNAYGRSAQP 274

Query: 217 TVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQE---LPNVRSKSYV 273
             A      ++K+    N  + + LI  YG     K+   +   +++    P+V S S +
Sbjct: 275 EKAREVFNKMKKNSCKPNKVSYNALIDAYGSAGMLKEAVGLLHEMEKDGIQPDVVSISTL 334

Query: 274 LAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMN 333
           LA  A GR  Q++R E +    +S      T  YNS I  Y   G  +KA  L   M  +
Sbjct: 335 LA--ACGRCRQITRIETILEAARSRGIDLNTVAYNSGIKSYLSFGDYEKALELYTSMRES 392

Query: 334 GCKPNAITYRHLALGCFKSNLVEEGFKALE--LGMKLITTKKVRSSTPWLETTLSIIEIF 391
             KP+A+TY  L  G  K     E  +  E  +  K+ +TK+V SS         +I  +
Sbjct: 393 NVKPDAVTYNILISGSSKLGKYTESLRFFEDMVDSKVSSTKEVYSS---------LIYSY 443

Query: 392 AEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAK--INDPNLLRRMILGGARPDA 449
            ++G +  AE+ F  +KK+        Y TLI+AY          +L + M + G  PDA
Sbjct: 444 IKQGKLSEAESTFSSMKKSGCFPDVLTYTTLIQAYNAGGGWKRAWDLFKEMEVNGIPPDA 503

Query: 450 ETYSLLKLAEQFQK 463
              S   L E F K
Sbjct: 504 IICS--SLMEAFNK 515



 Score = 63.9 bits (154), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 89/406 (21%), Positives = 162/406 (39%), Gaps = 63/406 (15%)

Query: 98  YNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMK 157
           YNN++ AC   G  K +LE  KKM   G     +  N ++    +  +     +    MK
Sbjct: 84  YNNVINACGAAGNWKKALELCKKMTENGVGPDLVTHNIVLSALKNGAQYSKAISYFEIMK 143

Query: 158 ADKVAPHVSTF----HILMKIEANDHNIEGLMKVYSDMK--RSEVEPNEV-------SYC 204
              V     T     H L+KI      IE    +++ M+  R++  P+ V       SYC
Sbjct: 144 GANVTSDTFTLNIIIHCLVKIGQCGEAIE----LFNSMRERRTKCPPDVVTYTSIMHSYC 199

Query: 205 ILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLER--IWATVQ 262
           I         ++ +     E ++ ++   N        +L  Y ++G   E   I+  ++
Sbjct: 200 IYGQVENCKAIFDL--MVAEGVKPNIVAYN-------SLLGAYASRGMHREALAIFNLIK 250

Query: 263 E---LPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGF 319
           +    P++   SY   + A+GR AQ  +A E++ +M+          YN++I  Y   G 
Sbjct: 251 KNGLRPDI--VSYTSLLNAYGRSAQPEKAREVFNKMKKNSCKPNKVSYNALIDAYGSAGM 308

Query: 320 IDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEE---------------------- 357
           + +A GLL EM  +G +P+ ++   L   C +   +                        
Sbjct: 309 LKEAVGLLHEMEKDGIQPDVVSISTLLAACGRCRQITRIETILEAARSRGIDLNTVAYNS 368

Query: 358 ------GFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKAN 411
                  F   E  ++L T+ +  +  P   T   +I   ++ G    +   FE++  + 
Sbjct: 369 GIKSYLSFGDYEKALELYTSMRESNVKPDAVTYNILISGSSKLGKYTESLRFFEDMVDSK 428

Query: 412 YTKYTFVYNTLIKAYVK-AKINDP-NLLRRMILGGARPDAETYSLL 455
            +    VY++LI +Y+K  K+++  +    M   G  PD  TY+ L
Sbjct: 429 VSSTKEVYSSLIYSYIKQGKLSEAESTFSSMKKSGCFPDVLTYTTL 474



 Score = 60.8 bits (146), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 73/331 (22%), Positives = 131/331 (39%), Gaps = 45/331 (13%)

Query: 132 VFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDM 191
           ++N LI  +S  G+ +   NI+  M    + P  +T++ ++       N +  +++   M
Sbjct: 48  IYNSLIHAHSRAGQWRWAINIMEDMLRAAIPPTRTTYNNVINACGAAGNWKKALELCKKM 107

Query: 192 KRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKG 251
             + V P+ V++ I+ +A      Y+ A +Y E ++ +   ++  TL+++          
Sbjct: 108 TENGVGPDLVTHNIVLSALKNGAQYSKAISYFEIMKGANVTSDTFTLNII---------- 157

Query: 252 KDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQS--VKQLKATEQYNS 309
                                   I    +I Q   A EL+  M+    K       Y S
Sbjct: 158 ------------------------IHCLVKIGQCGEAIELFNSMRERRTKCPPDVVTYTS 193

Query: 310 VISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLI 369
           ++  YC  G ++    +   M   G KPN + Y  L LG + S  +    +AL +   LI
Sbjct: 194 IMHSYCIYGQVENCKAIFDLMVAEGVKPNIVAYNSL-LGAYASRGMHR--EALAI-FNLI 249

Query: 370 TTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKA 429
               +R   P + +  S++  +        A  +F ++KK +       YN LI AY  A
Sbjct: 250 KKNGLR---PDIVSYTSLLNAYGRSAQPEKAREVFNKMKKNSCKPNKVSYNALIDAYGSA 306

Query: 430 KI--NDPNLLRRMILGGARPDAETYSLLKLA 458
            +      LL  M   G +PD  + S L  A
Sbjct: 307 GMLKEAVGLLHEMEKDGIQPDVVSISTLLAA 337



 Score = 53.1 bits (126), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 54/257 (21%), Positives = 116/257 (45%), Gaps = 9/257 (3%)

Query: 94  NELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNIL 153
           N + YN+L+ A   +G+ + +L     ++  G     + +  L+       + +    + 
Sbjct: 222 NIVAYNSLLGAYASRGMHREALAIFNLIKKNGLRPDIVSYTSLLNAYGRSAQPEKAREVF 281

Query: 154 RQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVA 213
            +MK +   P+  +++ L+    +   ++  + +  +M++  ++P+ VS   L  A    
Sbjct: 282 NKMKKNSCKPNKVSYNALIDAYGSAGMLKEAVGLLHEMEKDGIQPDVVSISTLLAACGRC 341

Query: 214 RLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLER---IWATVQELPNVRSK 270
           R  T  ET +EA      G + +T+     +  YL+ G D E+   ++ +++E  NV+  
Sbjct: 342 RQITRIETILEAARSR--GIDLNTVAYNSGIKSYLSFG-DYEKALELYTSMRE-SNVKPD 397

Query: 271 --SYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLK 328
             +Y + I    ++ + + +   + +M   K     E Y+S+I  Y K G + +A     
Sbjct: 398 AVTYNILISGSSKLGKYTESLRFFEDMVDSKVSSTKEVYSSLIYSYIKQGKLSEAESTFS 457

Query: 329 EMSMNGCKPNAITYRHL 345
            M  +GC P+ +TY  L
Sbjct: 458 SMKKSGCFPDVLTYTTL 474



 Score = 49.7 bits (117), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 44/162 (27%), Positives = 68/162 (41%), Gaps = 7/162 (4%)

Query: 267 VRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGL 326
            R+  Y + I  + R  QV +A  L+ EMQ  +     + YNS+I  + + G    A  +
Sbjct: 9   ARNDIYGMMIRLYARHNQVDQARGLFFEMQEWRCKPDADIYNSLIHAHSRAGQWRWAINI 68

Query: 327 LKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLS 386
           +++M      P   TY ++   C  +   +   KALEL  K+          P L T   
Sbjct: 69  MEDMLRAAIPPTRTTYNNVINACGAAGNWK---KALELCKKMTEN----GVGPDLVTHNI 121

Query: 387 IIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVK 428
           ++           A + FE +K AN T  TF  N +I   VK
Sbjct: 122 VLSALKNGAQYSKAISYFEIMKGANVTSDTFTLNIIIHCLVK 163


>gi|302804554|ref|XP_002984029.1| hypothetical protein SELMODRAFT_445736 [Selaginella moellendorffii]
 gi|300148381|gb|EFJ15041.1| hypothetical protein SELMODRAFT_445736 [Selaginella moellendorffii]
          Length = 547

 Score = 78.6 bits (192), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 66/225 (29%), Positives = 109/225 (48%), Gaps = 19/225 (8%)

Query: 241 LIILYGYLAKGKDLERIWATVQELPNVRSKS-YVLAIEAFGRIAQVSRAEELWLE-MQSV 298
           ++ +YGYL     +E IW+ ++  P    ++ Y  A+ AFG +  V RAEEL  E ++ V
Sbjct: 275 MLEMYGYLGDRDKVENIWSIIRAQPGGTFRNCYFSAMLAFGYLQDVDRAEELLRESVEVV 334

Query: 299 KQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEG 358
           K +    QY  ++ VY K G +DKA  LL+E + +        YR+     +  N + EG
Sbjct: 335 KVIPGRNQYFKMLDVYAKMGMMDKAEKLLEERAED-------QYRNF----YPCNALVEG 383

Query: 359 FKAL-ELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTF 417
           + +L +    L   +++ SS P  E  + ++ +   K D    + L        Y    +
Sbjct: 384 YLSLNDPDKALKKMEELGSSRPSYEAVVGLLPVLESKKDTLATKKLIRAY-LFQYRGDVY 442

Query: 418 VYNTLIKAYVKA-KINDPNLLRRMILGGARPDAETYSLLKLAEQF 461
           +YN ++K YV A K   P +L R  +    P+ ET  L+K+ E F
Sbjct: 443 LYNKMLKVYVAAGKRPGPRMLARFEID---PNDETRELMKVIEGF 484


>gi|218197756|gb|EEC80183.1| hypothetical protein OsI_22045 [Oryza sativa Indica Group]
          Length = 577

 Score = 78.6 bits (192), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 74/323 (22%), Positives = 140/323 (43%), Gaps = 24/323 (7%)

Query: 144 GRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEG--LMKVYSDMKRSEVEPNEV 201
           GR      +L  M+   + P + +F+ L+   A    +     +++  +++++ + P+ +
Sbjct: 8   GRFDDARQLLDAMRDQDIEPDLVSFNTLINARAKSGCLAAGVALELLHEVRQAGLRPDAI 67

Query: 202 SYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATV 261
           +Y  L +A +       A    E +  S    +  T + ++ ++G   K ++ E ++  +
Sbjct: 68  TYNTLISACSQGSNLDDAVAVFEEMIASECRPDLWTYNAMVSVHGRCGKAQEAELMFKEL 127

Query: 262 QE---LPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNG 318
            E    P+  + +Y   + AF +   V R E +  E+      K    YN++I +Y K G
Sbjct: 128 VEKGFQPD--AVTYNSLLYAFAKEGDVERVERVCEELVKAGFRKDGITYNTMIHMYGKMG 185

Query: 319 FIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALE----LGMKLITTKKV 374
            +D A GL  EM   GC P+A+TY  L     K + + E  K LE     G+K       
Sbjct: 186 RLDLALGLYDEMRAIGCTPDAVTYTVLVDSLGKMDRISEAGKVLEEMADAGLK------- 238

Query: 375 RSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKINDP 434
               P L T  ++I  +A+ G   +AE  F+ + ++        Y  ++  + ++     
Sbjct: 239 ----PTLVTFSALICAYAKSGRQDDAERTFDRMVESGVKPDRLAYLVMLDVFARSDETRK 294

Query: 435 --NLLRRMILGGARPDAETYSLL 455
              L R MI  G +PD   Y +L
Sbjct: 295 LMVLYRAMIKDGYKPDDGLYQVL 317



 Score = 42.7 bits (99), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 47/225 (20%), Positives = 98/225 (43%), Gaps = 9/225 (4%)

Query: 47  EVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQGEKLFCCIPKD--YQNELLYNNLVIA 104
           E+M   + E+ ++P  + Y+ LL    K   + + E++   + K    ++ + YN ++  
Sbjct: 121 ELMFKELVEKGFQPDAVTYNSLLYAFAKEGDVERVERVCEELVKAGFRKDGITYNTMIHM 180

Query: 105 CLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPH 164
               G + L+L    +MR +G +   + +  L+       R      +L +M    + P 
Sbjct: 181 YGKMGRLDLALGLYDEMRAIGCTPDAVTYTVLVDSLGKMDRISEAGKVLEEMADAGLKPT 240

Query: 165 VSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETY-V 223
           + TF  L+   A     +   + +  M  S V+P+ ++Y ++    A +      ET  +
Sbjct: 241 LVTFSALICAYAKSGRQDDAERTFDRMVESGVKPDRLAYLVMLDVFARSD-----ETRKL 295

Query: 224 EALEKSMTGNNWSTLDVLI-ILYGYLAKGKDLERIWATVQELPNV 267
             L ++M  + +   D L  +L   LAKG + + I   +Q++  V
Sbjct: 296 MVLYRAMIKDGYKPDDGLYQVLLAALAKGNEHDEIEGVIQDMEAV 340


>gi|302816960|ref|XP_002990157.1| hypothetical protein SELMODRAFT_131102 [Selaginella moellendorffii]
 gi|300142012|gb|EFJ08717.1| hypothetical protein SELMODRAFT_131102 [Selaginella moellendorffii]
          Length = 760

 Score = 78.6 bits (192), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 82/368 (22%), Positives = 147/368 (39%), Gaps = 51/368 (13%)

Query: 94  NELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNIL 153
           N  +Y++L+ A    G +  ++E  + M+V+    + +V+N +I   S  G   T   I 
Sbjct: 155 NVFVYSSLICAYGRSGKLAKAVEIFEAMKVVCKP-NLVVYNAVIDACSKGGDYPTALRIF 213

Query: 154 RQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVA 213
           R+M    ++P   TF+ L+      +  E   +++++M+   +  ++V+Y  L   +   
Sbjct: 214 REMLEQGMSPDRITFNTLISAAGRANRWEECDRIFAEMEERGIARDDVTYNTLIATYCRG 273

Query: 214 RLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSK--- 270
               +    +E + KS +G   S +    ++ GY   G   E I A  QE+ N   +   
Sbjct: 274 GQMHLGAALMETMAKS-SGIEPSVITYSTMIDGYAKLGLAHEAI-ALFQEMRNQNVEPDG 331

Query: 271 -SYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKE 329
             Y   ++   R+     A  +   M+     K    YN+++  Y K G   +A  LL+E
Sbjct: 332 ICYNTMVDIHARLGNFDEAHSIRRAMEEAGFAKDIVTYNALLDSYGKQGKFREAMSLLEE 391

Query: 330 MSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIE 389
           M   G  PN +TY                                           ++I+
Sbjct: 392 MKQRGASPNILTYS------------------------------------------ALID 409

Query: 390 IFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKINDP--NLLRRMILGGARP 447
            + + G   +A  LF+++KKA       +Y+TL+    K    D    LL  M   G RP
Sbjct: 410 AYCKHGFHRDAMALFQDVKKAGLQPDVVLYSTLVDGCCKNGSPDEALALLEEMADNGIRP 469

Query: 448 DAETYSLL 455
           +  TY+ L
Sbjct: 470 NVITYNSL 477



 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 91/407 (22%), Positives = 166/407 (40%), Gaps = 52/407 (12%)

Query: 94  NELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNIL 153
           N ++YN ++ AC   G    +L   ++M   G S   + FN LI       R +    I 
Sbjct: 189 NLVVYNAVIDACSKGGDYPTALRIFREMLEQGMSPDRITFNTLISAAGRANRWEECDRIF 248

Query: 154 RQMKADKVAPHVSTFHIL----------------MKIEANDHNIEGLMKVYS-------- 189
            +M+   +A    T++ L                M+  A    IE  +  YS        
Sbjct: 249 AEMEERGIARDDVTYNTLIATYCRGGQMHLGAALMETMAKSSGIEPSVITYSTMIDGYAK 308

Query: 190 ------------DMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWST 237
                       +M+   VEP+ + Y  +   HA    +  A +   A+E++    +  T
Sbjct: 309 LGLAHEAIALFQEMRNQNVEPDGICYNTMVDIHARLGNFDEAHSIRRAMEEAGFAKDIVT 368

Query: 238 LDVLIILYGYLAKGKDLERIWATVQEL---PNVRSKSYVLAIEAFGRIAQVSRAEELWLE 294
            + L+  YG   K ++   +   +++    PN+ +  Y   I+A+ +      A  L+ +
Sbjct: 369 YNALLDSYGKQGKFREAMSLLEEMKQRGASPNILT--YSALIDAYCKHGFHRDAMALFQD 426

Query: 295 MQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHL--ALG--CF 350
           ++          Y++++   CKNG  D+A  LL+EM+ NG +PN ITY  L  A G  C 
Sbjct: 427 VKKAGLQPDVVLYSTLVDGCCKNGSPDEALALLEEMADNGIRPNVITYNSLLDAYGRQCL 486

Query: 351 KSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKA 410
              +V + F  L   +    T  ++ S  + +   S+++   ++  V  A  +F E+ K 
Sbjct: 487 ---MVRKNFPKLRFFLLPRVTMLLKPSVDYDQQ--SLVDPKQKQALVLAAARVFREMAKN 541

Query: 411 NYTKYTFVYNTLIKAYVK-AKINDP-NLLRRMILGGARPDAETYSLL 455
                   +++++ A    A + D  +LL  M +   R    T+ LL
Sbjct: 542 GVKPNVVTFSSILNACSHCASVEDASSLLEAMRVFDGRVYGVTHGLL 588


>gi|115445137|ref|NP_001046348.1| Os02g0226900 [Oryza sativa Japonica Group]
 gi|49388538|dbj|BAD25660.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|49388672|dbj|BAD25856.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|113535879|dbj|BAF08262.1| Os02g0226900 [Oryza sativa Japonica Group]
          Length = 637

 Score = 78.6 bits (192), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 101/462 (21%), Positives = 198/462 (42%), Gaps = 56/462 (12%)

Query: 44  RALEVM-EWVIRERPYRPKELDYSYLLEFTIKNHGISQGEKLFCCIP-KDYQNELL-YNN 100
           R LE+  +W +R   Y      Y  +++  +++  +S+G +++  +  K Y+ ++  YN 
Sbjct: 172 RCLELASKWGLRLSGY-----TYKCIVQAHLRSREVSKGFQVYEEMRRKGYKLDIFAYNM 226

Query: 101 LVIACLDKGVIKLSL---EYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMK 157
           L+ A    G++  +    E MK+   +  + +Y +   LI ++   GR     +   +M 
Sbjct: 227 LLDALAKAGMVDQAFQVFEDMKQKHCVPDAYTYTI---LIRMSGKAGRTSKFLSFFDEMV 283

Query: 158 ADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCI----LATAHAVA 213
           +     ++  F+ +++    +  ++ ++ V S M  ++ +PN+ +Y I    LAT   + 
Sbjct: 284 SKGCVLNLIAFNTIIEALGKNKMVDKVIFVLSKMVENDCQPNQFTYSITLDILATEGQLH 343

Query: 214 RLYTVAETYVEALEKSM----------TGNNWSTLDVLIILYGYLAKGK----------- 252
           RL  V +     + +S+          +G+     +V   ++    KG            
Sbjct: 344 RLNEVLDICSRFMNRSIYSYLVKSLCKSGHASEAHNVFCRMWNSHEKGDRDAFVSMLEVL 403

Query: 253 -DLERIWATVQELPNVRSKS-------YVLAIEAFGRIAQVSRAEELWLEMQSVKQLKAT 304
            + E+    +  L  +  K        Y +   A G++ QVS    L+ +M++   +   
Sbjct: 404 CNAEKTLEAIDLLHMMPEKGIVTDVGMYNMVFSALGKLKQVSFISNLFDKMKTNGIIPDV 463

Query: 305 EQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALEL 364
             YN +IS Y + G +DKAS L + M  + CKP+ +TY  L + C   +        L+ 
Sbjct: 464 FTYNIMISSYGRVGLVDKASELFEVMEASSCKPDVVTYNSL-INCLGKH------GDLDE 516

Query: 365 GMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIK 424
              L    + +   P + T   +IE F +   V  A +LF+E+     T     YN L+ 
Sbjct: 517 AHMLFKEMQEKGYDPDVFTYSILIECFGKSNKVEMACSLFDEMISEGCTPNIVTYNILLD 576

Query: 425 AY-VKAKINDPN-LLRRMILGGARPDAETYSLLKLAEQFQKK 464
               + K  + + L   M   G  PD+ TYS+L+  E   ++
Sbjct: 577 CLERRGKTEEAHKLYETMKQQGLIPDSITYSILERLESRSQR 618


>gi|296083865|emb|CBI24253.3| unnamed protein product [Vitis vinifera]
          Length = 582

 Score = 78.6 bits (192), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 88/369 (23%), Positives = 168/369 (45%), Gaps = 28/369 (7%)

Query: 98  YNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMK 157
           Y  L+      G    +++ +  M   G   S + +N L+      G       ILR M 
Sbjct: 176 YTGLIDGLCKDGRATHAMDLLNLMVEKGEEPSNVTYNVLLSGLCKEGLVIDAFKILRMMI 235

Query: 158 ADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSE--VEPNEVSYCILATAHAV-AR 214
                  V T++ LMK   +   ++  +K+++ M  +E  +EPN  ++ +L        R
Sbjct: 236 EKGKKADVVTYNTLMKGLCDKGKVDEALKLFNSMFDNENCLEPNVFTFNMLIGGLCKEGR 295

Query: 215 LYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLE--RIWATVQELPNV-RSKS 271
           L    + + + ++K   GN   T ++L  L G L  GK  E   +W  V +L  V  S +
Sbjct: 296 LTKAVKIHRKMVKKGSCGN-LVTYNML--LGGCLKAGKIKEAMELWKQVLDLGFVPNSFT 352

Query: 272 YVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMS 331
           Y + I+ F ++  ++ A+ L+ EM++     A   YN++++  CK G +++A  L +EM 
Sbjct: 353 YSILIDGFCKMRMLNIAKGLFCEMRTHGLNPALFDYNTLMASLCKEGSLEQAKSLFQEMG 412

Query: 332 MNGCKPNAITYRHLALGCFKSN----LVEEGFKALELGMKLITTKKVRSSTPWLETTLSI 387
              C+P+ I++  +  G  K+     + E   K +E+G++           P   T  ++
Sbjct: 413 NANCEPDIISFNTMIDGTLKAGDFQFVKELQMKMVEMGLR-----------PDALTFSTL 461

Query: 388 IEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKINDP---NLLRRMILGG 444
           I   ++ G++  A++  E +  + +T    VY++L+K  + +K +     NLL +M   G
Sbjct: 462 INRLSKLGELDEAKSALERMVASGFTPDALVYDSLLKG-LSSKGDTTEIINLLHQMAAKG 520

Query: 445 ARPDAETYS 453
              D +  S
Sbjct: 521 TVLDRKIVS 529



 Score = 57.4 bits (137), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 83/394 (21%), Positives = 148/394 (37%), Gaps = 70/394 (17%)

Query: 96  LLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQ 155
           +LY  L+    + G +    E   +M   G S + + ++ L+      G+ K    +L  
Sbjct: 104 VLYGTLISGFCNNGNLDRGKELFDEMLGKGISANVVTYSCLVHGLCRLGQWKEANTVLNA 163

Query: 156 MKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARL 215
           M    + P V T+  L+     D      M + + M     EP+ V+Y +L +      L
Sbjct: 164 MAEHGIHPDVVTYTGLIDGLCKDGRATHAMDLLNLMVEKGEEPSNVTYNVLLSGLCKEGL 223

Query: 216 YTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSKSYVLA 275
                                 +D   IL   + KGK  + +             +Y   
Sbjct: 224 ---------------------VIDAFKILRMMIEKGKKADVV-------------TYNTL 249

Query: 276 IEAFGRIAQVSRAEELWLEMQSVKQLKATE--QYNSVISVYCKNGFIDKASGLLKEMSMN 333
           ++      +V  A +L+  M   +         +N +I   CK G + KA  + ++M   
Sbjct: 250 MKGLCDKGKVDEALKLFNSMFDNENCLEPNVFTFNMLIGGLCKEGRLTKAVKIHRKMVKK 309

Query: 334 GCKPNAITYRHLALGCFKSNLVEEGF----KALELG-----------------MKLITTK 372
           G   N +TY  L  GC K+  ++E      + L+LG                 M+++   
Sbjct: 310 GSCGNLVTYNMLLGGCLKAGKIKEAMELWKQVLDLGFVPNSFTYSILIDGFCKMRMLNIA 369

Query: 373 K-------VRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKA 425
           K            P L    +++    ++G +  A++LF+E+  AN       +NT+I  
Sbjct: 370 KGLFCEMRTHGLNPALFDYNTLMASLCKEGSLEQAKSLFQEMGNANCEPDIISFNTMIDG 429

Query: 426 YVKAKINDPNLLR----RMILGGARPDAETYSLL 455
            +KA   D   ++    +M+  G RPDA T+S L
Sbjct: 430 TLKA--GDFQFVKELQMKMVEMGLRPDALTFSTL 461



 Score = 53.1 bits (126), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 46/152 (30%), Positives = 70/152 (46%), Gaps = 9/152 (5%)

Query: 306 QYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELG 365
            YN++I+  CK   + +A GLL EM   GC PN++T   L  G  K   ++E  + LE  
Sbjct: 35  SYNTLINGLCKAKKLKEAVGLLLEMEAAGCFPNSVTCTTLMDGLCKDGRMDEAMELLE-A 93

Query: 366 MKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKA 425
           MK    KK   +   L  TL  I  F   G++   + LF+E+     +     Y+ L+  
Sbjct: 94  MK----KKGFDADVVLYGTL--ISGFCNNGNLDRGKELFDEMLGKGISANVVTYSCLVHG 147

Query: 426 YVK-AKINDPN-LLRRMILGGARPDAETYSLL 455
             +  +  + N +L  M   G  PD  TY+ L
Sbjct: 148 LCRLGQWKEANTVLNAMAEHGIHPDVVTYTGL 179



 Score = 52.0 bits (123), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 83/365 (22%), Positives = 144/365 (39%), Gaps = 31/365 (8%)

Query: 105 CLDKGVIKLSLEYMKKMRVLGH---SISYLVFNRLIILNSSPGRRKTIPNILRQMKADKV 161
           C + GV     E M  +R +G    S   + +N LI       + K    +L +M+A   
Sbjct: 9   CRNGGV----FEAMGLIREMGRKSVSPDIVSYNTLINGLCKAKKLKEAVGLLLEMEAAGC 64

Query: 162 APHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAV-ARLYTVAE 220
            P+  T   LM     D  ++  M++   MK+   + + V Y  L +       L    E
Sbjct: 65  FPNSVTCTTLMDGLCKDGRMDEAMELLEAMKKKGFDADVVLYGTLISGFCNNGNLDRGKE 124

Query: 221 TYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSK--------SY 272
            + E L K ++ N        ++ Y  L  G      W     + N  ++        +Y
Sbjct: 125 LFDEMLGKGISAN--------VVTYSCLVHGLCRLGQWKEANTVLNAMAEHGIHPDVVTY 176

Query: 273 VLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSM 332
              I+   +  + + A +L   M    +  +   YN ++S  CK G +  A  +L+ M  
Sbjct: 177 TGLIDGLCKDGRATHAMDLLNLMVEKGEEPSNVTYNVLLSGLCKEGLVIDAFKILRMMIE 236

Query: 333 NGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFA 392
            G K + +TY  L  G      V+E   AL+L   +   +      P + T   +I    
Sbjct: 237 KGKKADVVTYNTLMKGLCDKGKVDE---ALKLFNSMFDNENCLE--PNVFTFNMLIGGLC 291

Query: 393 EKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKA-KINDPNLLRRMILG-GARPDAE 450
           ++G +  A  +  ++ K         YN L+   +KA KI +   L + +L  G  P++ 
Sbjct: 292 KEGRLTKAVKIHRKMVKKGSCGNLVTYNMLLGGCLKAGKIKEAMELWKQVLDLGFVPNSF 351

Query: 451 TYSLL 455
           TYS+L
Sbjct: 352 TYSIL 356



 Score = 49.3 bits (116), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 40/154 (25%), Positives = 67/154 (43%), Gaps = 17/154 (11%)

Query: 308 NSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMK 367
           N V+   C+NG + +A GL++EM      P+ ++Y  L  G  K+       K L+  + 
Sbjct: 2   NIVLKGLCRNGGVFEAMGLIREMGRKSVSPDIVSYNTLINGLCKA-------KKLKEAVG 54

Query: 368 LITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYV 427
           L+   +     P   T  ++++   + G +  A  L E +KK  +     +Y TLI  + 
Sbjct: 55  LLLEMEAAGCFPNSVTCTTLMDGLCKDGRMDEAMELLEAMKKKGFDADVVLYGTLISGFC 114

Query: 428 KAKINDPNLLR------RMILGGARPDAETYSLL 455
               N+ NL R       M+  G   +  TYS L
Sbjct: 115 ----NNGNLDRGKELFDEMLGKGISANVVTYSCL 144


>gi|357121285|ref|XP_003562351.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09900-like [Brachypodium distachyon]
          Length = 624

 Score = 78.2 bits (191), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 75/319 (23%), Positives = 145/319 (45%), Gaps = 18/319 (5%)

Query: 144 GRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSY 203
           G  +    IL +M +  + P+V  ++ ++K   +    E   ++ ++M +     ++V++
Sbjct: 280 GHHEVANEILSRMPSYGLKPNVVCYNTVLKGICSADRWEKAEELLTEMYQKNCPLDDVTF 339

Query: 204 CILATAHAVARLYTVAETYVEALEKSMT-GNNWSTLDVLIILYGYLAKGKDLERIWATVQ 262
            IL        L    +  +E LE+ +  G     +    ++ G+  +G   E +   ++
Sbjct: 340 NILVDFFCQNGL---VDRVIELLEQMLEHGCMPDVITYTTVINGFCKEGLIDEAVM-LLK 395

Query: 263 ELPNVRSK----SYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNG 318
            +P+   K    SY + ++      +   AEEL   M     L     +N++I+  CK G
Sbjct: 396 NMPSCGCKPNTISYTIVLKGLCSTERWVDAEELMSRMIQQGCLPNPVTFNTIINFLCKKG 455

Query: 319 FIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSST 378
            +++A  LLK+M +NGC P+ I+Y  +  G  K+   EE   ALEL + ++  K +   T
Sbjct: 456 LVEQAIELLKQMLVNGCNPDLISYSTVIDGLGKAGKTEE---ALEL-LNVMINKGI---T 508

Query: 379 PWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKIND--PNL 436
           P + T  S+    A +G +     +F+ ++ A       +YN +I +  K +  D   + 
Sbjct: 509 PNVITYSSMAFALAREGRIDKVIQMFDNIQDATIRSDAVLYNAVISSLCKRRETDLAIDF 568

Query: 437 LRRMILGGARPDAETYSLL 455
           L  M+  G  P+  TY+ L
Sbjct: 569 LAYMVSNGCMPNESTYTAL 587



 Score = 53.5 bits (127), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 52/217 (23%), Positives = 93/217 (42%), Gaps = 28/217 (12%)

Query: 242 IILYGYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQL 301
           I+ Y  + KG    + W  V+EL +   K +    EA  ++AQ     ++ +        
Sbjct: 221 IVSYNAVLKGLCAAKRWGDVEELMDEMVKVH----EALSQMAQHGCTPDIRM-------- 268

Query: 302 KATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKA 361
                Y ++I   CK G  + A+ +L  M   G KPN + Y  +  G   ++  E   KA
Sbjct: 269 -----YATIIDGICKEGHHEVANEILSRMPSYGLKPNVVCYNTVLKGICSADRWE---KA 320

Query: 362 LELGMKLITTKKVRSSTPWLETTLSI-IEIFAEKGDVGNAENLFEELKKANYTKYTFVYN 420
            EL      T+  + + P  + T +I ++ F + G V     L E++ +         Y 
Sbjct: 321 EEL-----LTEMYQKNCPLDDVTFNILVDFFCQNGLVDRVIELLEQMLEHGCMPDVITYT 375

Query: 421 TLIKAYVKAKINDPN--LLRRMILGGARPDAETYSLL 455
           T+I  + K  + D    LL+ M   G +P+  +Y+++
Sbjct: 376 TVINGFCKEGLIDEAVMLLKNMPSCGCKPNTISYTIV 412



 Score = 43.1 bits (100), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 68/291 (23%), Positives = 119/291 (40%), Gaps = 20/291 (6%)

Query: 94  NELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNIL 153
           +++ +N LV      G++   +E +++M   G     + +  +I      G       +L
Sbjct: 335 DDVTFNILVDFFCQNGLVDRVIELLEQMLEHGCMPDVITYTTVINGFCKEGLIDEAVMLL 394

Query: 154 RQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVA 213
           + M +    P+  ++ I++K   +        ++ S M +    PN V++  +       
Sbjct: 395 KNMPSCGCKPNTISYTIVLKGLCSTERWVDAEELMSRMIQQGCLPNPVTFNTIINFLCKK 454

Query: 214 RLYTVAETYVEALEKSMT-GNNWSTLDVLIILYGYLAKGKD---LERIWATVQE--LPNV 267
            L    E  +E L++ +  G N   +    ++ G    GK    LE +   + +   PNV
Sbjct: 455 GL---VEQAIELLKQMLVNGCNPDLISYSTVIDGLGKAGKTEEALELLNVMINKGITPNV 511

Query: 268 RS-KSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGL 326
            +  S   A+   GRI +V    +++  +Q          YN+VIS  CK    D A   
Sbjct: 512 ITYSSMAFALAREGRIDKVI---QMFDNIQDATIRSDAVLYNAVISSLCKRRETDLAIDF 568

Query: 327 LKEMSMNGCKPNAITYRHLALGCFKSNLVEEGF--KALELGMKLITTKKVR 375
           L  M  NGC PN  TY  L  G     L  EG   +A +L  +L + + VR
Sbjct: 569 LAYMVSNGCMPNESTYTALIKG-----LASEGLLCEAQDLLSELCSRRAVR 614


>gi|226528511|ref|NP_001143788.1| uncharacterized protein LOC100276555 [Zea mays]
 gi|195627038|gb|ACG35349.1| hypothetical protein [Zea mays]
          Length = 422

 Score = 78.2 bits (191), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 77/339 (22%), Positives = 141/339 (41%), Gaps = 27/339 (7%)

Query: 12  SAFQSWMREGFPVHRGEIFHSINRLRKLQLNKRALEVMEWVIRERPYRPKELDYSYLLEF 71
           +A + W  EG      E+      L +++  K ALEV +W+         E DY   ++ 
Sbjct: 72  AALEKWSSEGRDAPAAELRRIARDLTRVRRYKHALEVADWMKTHHESDLSENDYGMRIDL 131

Query: 72  TIKNHGISQGEKLFCCIPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYL 131
             K  G S  E  F  +P   ++   Y  L+ +     +   +    ++M+     +  L
Sbjct: 132 ITKVFGASAAEDFFEKLPAGAKSLEAYTALLHSYGRSKMTDRAERLFERMKGASLPMDAL 191

Query: 132 VFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDM 191
           V+N ++ L  S G    +  +  ++K   V+P + T+++     A   ++EG   V  +M
Sbjct: 192 VYNEMMTLYISVGELGKVEAVAEELKRQNVSPDLFTYNLRASAAAASMDLEGFRAVLDEM 251

Query: 192 KR---SEVEPNEVSYCILATAHAVAR--LYTVAETYVEALEKSMTGNNWSTLDVLIILYG 246
            R   S  E     Y  LA+ +  A   L +V    VEA E  ++   W T D L+IL+ 
Sbjct: 252 SRDLKSSTEGGWALYRDLASVYVDAGQLLGSVNSPPVEAGEARISQREWITYDFLVILHA 311

Query: 247 YLAKGKDLERIWATV--------QELPNVRSKSYVLAIEAF---GRIAQVSRAEELWLEM 295
            L + + +  IW ++        Q    + S++YV  + ++   GR+       + W   
Sbjct: 312 GLGRPERIRDIWRSMVATSQSQSQSQQRMTSRNYVCVVSSYLACGRLEDAGEVVDQW--- 368

Query: 296 QSVKQLKATE----QYNSVISVYCKNGFIDKASGLLKEM 330
              ++ KA E      N ++    + G  D A+G  +E+
Sbjct: 369 ---QRSKAPEFDVSACNRLLDALLRAGLAD-AAGRFREL 403



 Score = 40.8 bits (94), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 30/137 (21%), Positives = 64/137 (46%), Gaps = 7/137 (5%)

Query: 227 EKSMTGNNWST-LDVLIILYGYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQV 285
           E  ++ N++   +D++  ++G  A     E++ A  + L     ++Y   + ++GR    
Sbjct: 117 ESDLSENDYGMRIDLITKVFGASAAEDFFEKLPAGAKSL-----EAYTALLHSYGRSKMT 171

Query: 286 SRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHL 345
            RAE L+  M+          YN ++++Y   G + K   + +E+      P+  TY +L
Sbjct: 172 DRAERLFERMKGASLPMDALVYNEMMTLYISVGELGKVEAVAEELKRQNVSPDLFTY-NL 230

Query: 346 ALGCFKSNLVEEGFKAL 362
                 +++  EGF+A+
Sbjct: 231 RASAAAASMDLEGFRAV 247


>gi|242050480|ref|XP_002462984.1| hypothetical protein SORBIDRAFT_02g035800 [Sorghum bicolor]
 gi|241926361|gb|EER99505.1| hypothetical protein SORBIDRAFT_02g035800 [Sorghum bicolor]
          Length = 668

 Score = 78.2 bits (191), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 84/415 (20%), Positives = 174/415 (41%), Gaps = 57/415 (13%)

Query: 59  RPKELDYSYLLEFTIKNHGISQGEKLF-----CCIPKDYQNELLYNNLVIACLDKGVIKL 113
           +P+   Y+ LL+  ++   +   E++      C +  D   E  Y+ LV A    G  + 
Sbjct: 296 KPRTRAYNALLKGYVRIGSLKNAEQVLDEMSQCGVAPD---EATYSLLVDAYTRAGRWES 352

Query: 114 SLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMK 173
           +   +K+M   G   S  VF+R++      G  +    +LR+M+A  V P    +++++ 
Sbjct: 353 ARILLKEMEADGVKPSSYVFSRILAGFRDRGDWQKAFAVLREMQASGVRPDRHFYNVMID 412

Query: 174 IEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGN 233
                + +   M  +  M+  E+EP+ V++  L  AH     +  A    E + +S    
Sbjct: 413 TFGKYNCLGHAMDAFDRMREEEIEPDVVTWNTLIDAHCKGGRHDRAMELFEEMRESNCPP 472

Query: 234 NWSTLDVLIILYGYLAKGKDLERIWATVQE---LPNVRSKSYVLAIEAFGRIAQVSRAEE 290
             +T +++I L G   + + +E + + ++E   +PN+   +Y   ++ +GR  +   A +
Sbjct: 473 GTTTYNIMINLLGEQERWEGVEAMLSEMKEQGLVPNI--ITYTTLVDVYGRSGRYKEAID 530

Query: 291 LWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCF 350
               M++     +   Y+++++ Y + G  D A  ++K M  +G                
Sbjct: 531 CIEAMKADGLKPSPTMYHALVNAYAQRGLADHALNVVKAMKADG---------------- 574

Query: 351 KSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKA 410
                      LE+ + ++                S+I  F E   V  A ++ + +K+ 
Sbjct: 575 -----------LEVSILVLN---------------SLINAFGEDRRVVEAFSVLQFMKEN 608

Query: 411 NYTKYTFVYNTLIKAYVKAKIND--PNLLRRMILGGARPDAETYSLLKLAEQFQK 463
                   Y TL+KA ++ +  D  P +   MI  G  PD +  ++L+ A ++ K
Sbjct: 609 GLRPDVITYTTLMKALIRVEQFDKVPVIYEEMITSGCAPDRKARAMLRSALRYMK 663



 Score = 59.7 bits (143), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 57/276 (20%), Positives = 115/276 (41%), Gaps = 11/276 (3%)

Query: 184 LMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLII 243
           L ++  D++ S +EP+   +  L +A A A L   A   + + +        + +  LI 
Sbjct: 212 LERLLGDLRESRLEPDAPLFSDLISAFARAALPDAALELLASAQAIGLTPRSNAVTALIS 271

Query: 244 LYGYLAKGKDLERIWATVQELPNV--RSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQL 301
             G   +  + E ++        +  R+++Y   ++ + RI  +  AE++  EM      
Sbjct: 272 ALGSAGRVAEAEALFLEFFLAGEIKPRTRAYNALLKGYVRIGSLKNAEQVLDEMSQCGVA 331

Query: 302 KATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKA 361
                Y+ ++  Y + G  + A  LLKEM  +G KP++  +  +  G       ++ F  
Sbjct: 332 PDEATYSLLVDAYTRAGRWESARILLKEMEADGVKPSSYVFSRILAGFRDRGDWQKAFAV 391

Query: 362 LELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNT 421
           L    + +    VR    +      +I+ F +   +G+A + F+ +++         +NT
Sbjct: 392 L----REMQASGVRPDRHFYNV---MIDTFGKYNCLGHAMDAFDRMREEEIEPDVVTWNT 444

Query: 422 LIKAYVKAKINDP--NLLRRMILGGARPDAETYSLL 455
           LI A+ K   +D    L   M      P   TY+++
Sbjct: 445 LIDAHCKGGRHDRAMELFEEMRESNCPPGTTTYNIM 480


>gi|357140400|ref|XP_003571756.1| PREDICTED: pentatricopeptide repeat-containing protein At5g64320,
           mitochondrial-like [Brachypodium distachyon]
          Length = 673

 Score = 78.2 bits (191), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 104/450 (23%), Positives = 191/450 (42%), Gaps = 38/450 (8%)

Query: 28  EIFHSINRLRKLQLNKRALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQGEKLFCC 87
           +I H +  L +L+   R ++ M      R   P  + Y +LL+       + +   +   
Sbjct: 247 DIVHGLCTLGRLREAARLVDRMMI----RGCVPNAITYGFLLKGLCLASQVEEARTMLGR 302

Query: 88  IPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRK 147
           +P+   N +L+N ++  CL  G +K + E  + M   G       ++ LI      GR  
Sbjct: 303 VPE--LNVVLFNTVIGRCLLDGKLKEAAELYETMGSKGCPPDAHTYSILIHGLCKLGRLG 360

Query: 148 TIPNILRQMKADKVAPHVSTFHILMKIEAND---HNIEGLMKVYSDMKRSEVEPNEVSYC 204
           +   +LR+M+    AP + T+ IL+     +    NI  +++V SD   S    N   Y 
Sbjct: 361 SAMKLLREMEDKGFAPSIVTYTILLHSFCRNGMWDNIRAMLEVMSDKGLSM---NLEGYN 417

Query: 205 ILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQEL 264
            +  A    R    A  +++ ++      +  T + +I    +L     +E      + L
Sbjct: 418 GMICAVCKDRRMDDAMRFMQEMKSQGYKPDICTYNTIIY---HLCNNNQMEEAEYLFENL 474

Query: 265 PN----VRSKSYVLAIEAFGRIAQ----VSRAEELWLEMQSVKQLKATEQYNSVISVYCK 316
            +      + +Y   I A  R       +S A ++ L   S+  +     YN +I   C+
Sbjct: 475 LHEGVVANAITYNTLIHALLRNGSWQDAISLANDMVLHGCSLDIV----SYNGLIKALCR 530

Query: 317 NGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRS 376
           +G +D++  LL EM+  G KPN ++Y  L     K+  V +   ALEL  +++  +    
Sbjct: 531 DGNVDRSIMLLSEMAEKGIKPNNVSYNLLISELCKTRRVRD---ALELSKEMLNQEL--- 584

Query: 377 STPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKI--NDP 434
            TP + T  ++I    + G +  A NL E+L   +       YN LI  + KA++  +  
Sbjct: 585 -TPDIVTYNTLINGLCKMGWMHAALNLLEKLHNEDVHADIITYNILISWHCKARLLHDAS 643

Query: 435 NLLRRMILGGARPDAETYSLLKLAEQFQKK 464
            LL R +  G  P+  T+ +  + + F +K
Sbjct: 644 MLLNRAVTSGITPNERTWGI--MVQNFVRK 671



 Score = 52.8 bits (125), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 83/380 (21%), Positives = 151/380 (39%), Gaps = 34/380 (8%)

Query: 87  CIPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRR 146
           C+P    + +LY  ++ A   +G +  +   + +M ++G S     FN ++    + GR 
Sbjct: 203 CVP----DTVLYQTVIHALCAQGGVNEAATLLDEMFLMGCSADVNTFNDIVHGLCTLGRL 258

Query: 147 KTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVE--PNEVSYC 204
           +    ++ +M      P+  T+  L+K       +E    +   +    V      +  C
Sbjct: 259 REAARLVDRMMIRGCVPNAITYGFLLKGLCLASQVEEARTMLGRVPELNVVLFNTVIGRC 318

Query: 205 ILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQEL 264
           +L       +L   AE Y E +       +  T  +LI  +G    G    R+ + ++ L
Sbjct: 319 LLD-----GKLKEAAELY-ETMGSKGCPPDAHTYSILI--HGLCKLG----RLGSAMKLL 366

Query: 265 PNVRSKSYVLAIEAFGRIAQVSRAEELW------LEMQSVKQLKAT-EQYNSVISVYCKN 317
             +  K +  +I  +  +        +W      LE+ S K L    E YN +I   CK+
Sbjct: 367 REMEDKGFAPSIVTYTILLHSFCRNGMWDNIRAMLEVMSDKGLSMNLEGYNGMICAVCKD 426

Query: 318 GFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSS 377
             +D A   ++EM   G KP+  TY  +      +N +EE     E    L+    V ++
Sbjct: 427 RRMDDAMRFMQEMKSQGYKPDICTYNTIIYHLCNNNQMEEAEYLFE---NLLHEGVVANA 483

Query: 378 TPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKINDPN-- 435
                T  ++I      G   +A +L  ++     +     YN LIKA  +    D +  
Sbjct: 484 I----TYNTLIHALLRNGSWQDAISLANDMVLHGCSLDIVSYNGLIKALCRDGNVDRSIM 539

Query: 436 LLRRMILGGARPDAETYSLL 455
           LL  M   G +P+  +Y+LL
Sbjct: 540 LLSEMAEKGIKPNNVSYNLL 559


>gi|302753376|ref|XP_002960112.1| hypothetical protein SELMODRAFT_402120 [Selaginella moellendorffii]
 gi|300171051|gb|EFJ37651.1| hypothetical protein SELMODRAFT_402120 [Selaginella moellendorffii]
          Length = 677

 Score = 78.2 bits (191), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 66/225 (29%), Positives = 109/225 (48%), Gaps = 19/225 (8%)

Query: 241 LIILYGYLAKGKDLERIWATVQELPNVRSKS-YVLAIEAFGRIAQVSRAEELWLE-MQSV 298
           ++ +YGYL     +E IW+ ++  P    ++ Y  A+ AFG +  V RAEEL  E ++ V
Sbjct: 275 MLEMYGYLGDRDKVENIWSIIRAQPGGTFRNCYFSAMLAFGYLRDVDRAEELLRESVEVV 334

Query: 299 KQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEG 358
           K +    QY  ++ VY K G +DKA  LL+E + +        YR+     +  N + EG
Sbjct: 335 KVIPGRNQYFKMLDVYAKMGMMDKAEKLLEERAED-------QYRNF----YPCNALVEG 383

Query: 359 FKAL-ELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTF 417
           + +L +    L   +++ SS P  E  + ++ +   K D    + L        Y    +
Sbjct: 384 YLSLNDPDKALKKMEELGSSRPSYEAVVGLLPVLESKKDTLATKKLIRAY-LFQYRGDVY 442

Query: 418 VYNTLIKAYVKA-KINDPNLLRRMILGGARPDAETYSLLKLAEQF 461
           +YN ++K YV A K   P +L R  +    P+ ET  L+K+ E F
Sbjct: 443 LYNKMLKVYVAAGKRPGPRMLARFEID---PNDETRELMKVIEGF 484


>gi|449443903|ref|XP_004139715.1| PREDICTED: pentatricopeptide repeat-containing protein At3g61520,
           mitochondrial-like [Cucumis sativus]
 gi|449475521|ref|XP_004154479.1| PREDICTED: pentatricopeptide repeat-containing protein At3g61520,
           mitochondrial-like [Cucumis sativus]
          Length = 660

 Score = 78.2 bits (191), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 80/335 (23%), Positives = 152/335 (45%), Gaps = 25/335 (7%)

Query: 131 LVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSD 190
           +++N LI      GR++    ++ +M++D+ AP  +TF+ L+        IE   K++++
Sbjct: 229 IMYNTLIDGLCKVGRQEEALCLMGKMRSDQCAPTTATFNCLINGYCRSGEIEVAHKLFNE 288

Query: 191 MKRSEVEPNEVSYCILATAHAV-ARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLA 249
           M+ +++EPN ++   L        R+ T  E +    +K + GNN +      +      
Sbjct: 289 MENAQIEPNVITLNTLVDGMCKHNRISTAVEFFRVMQQKGLKGNNVT----YTVFINAFC 344

Query: 250 KGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATE---- 305
              ++ +    + E+   +   +  A+  +  I  +++A  L      V +LK       
Sbjct: 345 NVNNMNKAMEFLDEMS--KDGCFPDAVVYYTLICGLAQAGRLDDASSVVSKLKEAGFCLD 402

Query: 306 --QYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEG-FKAL 362
              YN +IS +CK   +D+A   L EM + G KP+++TY  L      S   + G FK  
Sbjct: 403 RVCYNVLISEFCKKNKLDRAQEWLNEMELAGVKPDSVTYNTLI-----SYFSKIGNFKLA 457

Query: 363 ELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKK--ANYTKYTFVYN 420
              MK +T ++  S  P + T  ++I  +    ++  A  +F+E+    +     T +YN
Sbjct: 458 HKFMKKMTEEEGLS--PTVFTYGALIHAYCLNNNIDEAIKIFKEMNNVASKVPPNTVIYN 515

Query: 421 TLIKAYVK-AKINDP-NLLRRMILGGARPDAETYS 453
            LI +  K  ++N   +LL  M   G  P+  TY+
Sbjct: 516 ILIDSLCKQTQVNFALSLLDDMKFRGVMPNTTTYN 550



 Score = 61.6 bits (148), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 82/370 (22%), Positives = 149/370 (40%), Gaps = 17/370 (4%)

Query: 94  NELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNIL 153
           + ++YN L+      G  + +L  M KMR    + +   FN LI      G  +    + 
Sbjct: 227 DTIMYNTLIDGLCKVGRQEEALCLMGKMRSDQCAPTTATFNCLINGYCRSGEIEVAHKLF 286

Query: 154 RQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVA 213
            +M+  ++ P+V T + L+      + I   ++ +  M++  ++ N V+Y +   A    
Sbjct: 287 NEMENAQIEPNVITLNTLVDGMCKHNRISTAVEFFRVMQQKGLKGNNVTYTVFINAFCNV 346

Query: 214 RLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSK-SY 272
                A  +++ + K     +      LI       +  D   + + ++E      +  Y
Sbjct: 347 NNMNKAMEFLDEMSKDGCFPDAVVYYTLICGLAQAGRLDDASSVVSKLKEAGFCLDRVCY 406

Query: 273 VLAIEAFGRIAQVSRAEELWL---EMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKE 329
            + I  F +  ++ RA+E WL   E+  VK    T  YN++IS + K G    A   +K+
Sbjct: 407 NVLISEFCKKNKLDRAQE-WLNEMELAGVKPDSVT--YNTLISYFSKIGNFKLAHKFMKK 463

Query: 330 MS-MNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSI- 387
           M+   G  P   TY  L      +N ++E  K  +          V S  P      +I 
Sbjct: 464 MTEEEGLSPTVFTYGALIHAYCLNNNIDEAIKIFK------EMNNVASKVPPNTVIYNIL 517

Query: 388 IEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKINDP--NLLRRMILGGA 445
           I+   ++  V  A +L +++K       T  YN++ KA       D    L+ RM+    
Sbjct: 518 IDSLCKQTQVNFALSLLDDMKFRGVMPNTTTYNSIFKALRDKNWLDKAFKLMDRMVEQAC 577

Query: 446 RPDAETYSLL 455
            PD  T  +L
Sbjct: 578 NPDYITMEIL 587


>gi|359490016|ref|XP_002275236.2| PREDICTED: pentatricopeptide repeat-containing protein At3g18110,
           chloroplastic-like [Vitis vinifera]
          Length = 1442

 Score = 78.2 bits (191), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 93/423 (21%), Positives = 176/423 (41%), Gaps = 56/423 (13%)

Query: 43  KRALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQGEKLFCCIPKDYQNEL-LYNNL 101
           +RALEV EW+     Y P     + +L    K +  +   ++F        N + +YN +
Sbjct: 169 QRALEVYEWLNLRHWYSPNARMLATILSVLGKANQEALAVEIFARAEAASGNTVQVYNAM 228

Query: 102 VIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKT--IPNILRQMKAD 159
           +      G      E +  MR  G     + FN LI      G   T     +L +++  
Sbjct: 229 MGVYARTGRFTKVQELLDLMRSRGCEPDLVSFNTLINARLKSGTMVTNLAIELLNEVRRS 288

Query: 160 KVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVA 219
            + P + T++ L+   + + N+E  +KVY+DM     +P+  +Y                
Sbjct: 289 GIQPDIITYNTLISACSRESNLEEAVKVYNDMVAHRCQPDLWTY---------------- 332

Query: 220 ETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQE---LPNVRSKSYVLAI 276
                              + +I +YG     ++  R++  ++    LP+  + +Y   +
Sbjct: 333 -------------------NAMISVYGRCGMSREAGRLFKDLESKGFLPD--AVTYNSLL 371

Query: 277 EAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCK 336
            AF R   V + +E+  +M  +   K    YN++I +Y K G  D A  L  +M ++G  
Sbjct: 372 YAFAREGNVDKVKEICEDMVKMGFGKDEMTYNTIIHMYGKRGQHDLAFQLYSDMKLSGRS 431

Query: 337 PNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGD 396
           P+A+TY  L     K+N+++E  +     M  +   +V+   P L T  ++I  +A+ G 
Sbjct: 432 PDAVTYTVLIDSLGKANMIKEAAEV----MSEMLNARVK---PTLRTFSALICGYAKAGK 484

Query: 397 VGNAENLFEELK----KANYTKYTFVYNTLIKAYVKAKINDPNLLRRMILGGARPDAETY 452
              AE  F+ +     K ++  Y+ + + L++     K     L + M+L   +PD   Y
Sbjct: 485 RVEAEETFDCMLRSGIKPDHLAYSVMLDILLRFNESGKAM--KLYQEMVLHSFKPDHALY 542

Query: 453 SLL 455
            ++
Sbjct: 543 EVM 545



 Score = 48.9 bits (115), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 75/331 (22%), Positives = 128/331 (38%), Gaps = 47/331 (14%)

Query: 132  VFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDM 191
            V+N LI   ++ G  +    I   M  D  +P V + + LM+    D  ++ L  V  ++
Sbjct: 784  VWNALIHAYAASGCYERARAIFNTMMRDGPSPTVDSVNGLMQALIVDGRLDELYVVIQEL 843

Query: 192  KRS--EVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLA 249
            +    ++  + ++  + A AHA   ++ V + Y    +       + T+ +  I+ G LA
Sbjct: 844  QDMGFKISKSSITLMLDAFAHA-GNIFEVKKIY----QGMKAAGYFPTMHLYRIMIGLLA 898

Query: 250  KGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNS 309
            KGK +  + A V E+   R K  +                 +W               NS
Sbjct: 899  KGKRVRDVEAMVSEMEVARFKPDL----------------SIW---------------NS 927

Query: 310  VISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLI 369
            V+ +Y   G   K   + + +   G KP+  TY  L L   +    EEG       + L+
Sbjct: 928  VLKLYTGIGDFKKTGQVYQLIQEAGLKPDEDTYNTLILMYCRDRRPEEG-------LSLM 980

Query: 370  TTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKA 429
               +     P L+T  S+I  F +   V  AE LFE L           Y+ ++K +  +
Sbjct: 981  HEMRRVGLEPKLDTYKSLISAFGKLQMVEQAEELFEGLLSKECKLDRSFYHIMMKMFRNS 1040

Query: 430  KIND--PNLLRRMILGGARPDAETYSLLKLA 458
              +     LL  M   G  P   T  LL ++
Sbjct: 1041 GNHSKAEKLLGVMKEAGVEPTIATMHLLMVS 1071



 Score = 47.0 bits (110), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 70/338 (20%), Positives = 144/338 (42%), Gaps = 28/338 (8%)

Query: 99   NNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKA 158
            N L+ A +  G +      +++++ +G  IS      ++   +  G    +  I + MKA
Sbjct: 821  NGLMQALIVDGRLDELYVVIQELQDMGFKISKSSITLMLDAFAHAGNIFEVKKIYQGMKA 880

Query: 159  DKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYT- 217
                P +  + I++ + A    +  +  + S+M+ +  +P+      L+  ++V +LYT 
Sbjct: 881  AGYFPTMHLYRIMIGLLAKGKRVRDVEAMVSEMEVARFKPD------LSIWNSVLKLYTG 934

Query: 218  ------VAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNV---- 267
                    + Y + ++++    +  T + LI++Y    + +  E   + + E+  V    
Sbjct: 935  IGDFKKTGQVY-QLIQEAGLKPDEDTYNTLILMY---CRDRRPEEGLSLMHEMRRVGLEP 990

Query: 268  RSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLL 327
            +  +Y   I AFG++  V +AEEL+  + S +       Y+ ++ ++  +G   KA  LL
Sbjct: 991  KLDTYKSLISAFGKLQMVEQAEELFEGLLSKECKLDRSFYHIMMKMFRNSGNHSKAEKLL 1050

Query: 328  KEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSI 387
              M   G +P   T   L +    S   EE  K L+    L       S+ P+     S+
Sbjct: 1051 GVMKEAGVEPTIATMHLLMVSYSGSGQPEEAEKVLD---NLKVEGLPLSTLPY----SSV 1103

Query: 388  IEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKA 425
            I+ + + GD   A     E+KK        ++   ++A
Sbjct: 1104 IDAYLKNGDHNVAIQKLMEMKKDGLEPDHRIWTCFVRA 1141



 Score = 40.0 bits (92), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 38/185 (20%), Positives = 83/185 (44%), Gaps = 10/185 (5%)

Query: 276 IEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGC 335
           IEA+G++    +AE L   ++    +   + +N++I  Y  +G  ++A  +   M  +G 
Sbjct: 754 IEAYGKLKLWQKAESLVGSLRQKCTMVDRKVWNALIHAYAASGCYERARAIFNTMMRDGP 813

Query: 336 KPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKG 395
            P   +   L         ++E +  ++  ++ +  K  +SS   +      ++ FA  G
Sbjct: 814 SPTVDSVNGLMQALIVDGRLDELYVVIQ-ELQDMGFKISKSSITLM------LDAFAHAG 866

Query: 396 DVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAK-IND-PNLLRRMILGGARPDAETY- 452
           ++   + +++ +K A Y     +Y  +I    K K + D   ++  M +   +PD   + 
Sbjct: 867 NIFEVKKIYQGMKAAGYFPTMHLYRIMIGLLAKGKRVRDVEAMVSEMEVARFKPDLSIWN 926

Query: 453 SLLKL 457
           S+LKL
Sbjct: 927 SVLKL 931


>gi|242073288|ref|XP_002446580.1| hypothetical protein SORBIDRAFT_06g018360 [Sorghum bicolor]
 gi|241937763|gb|EES10908.1| hypothetical protein SORBIDRAFT_06g018360 [Sorghum bicolor]
          Length = 415

 Score = 78.2 bits (191), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 75/331 (22%), Positives = 138/331 (41%), Gaps = 11/331 (3%)

Query: 12  SAFQSWMREGFPVHRGEIFHSINRLRKLQLNKRALEVMEWVIRERPYRPKELDYSYLLEF 71
           +A   W  EG      E+      L +++  K ALEV +W+         E DY   ++ 
Sbjct: 79  AALDKWSGEGRAAPAAELRRIARDLSRVRRYKHALEVADWMKTHHESDLSESDYGMRIDL 138

Query: 72  TIKNHGISQGEKLFCCIPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYL 131
             K  G S  E  F  +P   ++   Y  L+ +     +   +    ++M+    S+  L
Sbjct: 139 ITKVFGASAAEDFFEKLPPGAKSLEAYTALLHSYGRSKMTDKAERLFERMKDANLSMDAL 198

Query: 132 VFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDM 191
           V+N ++ L  S G    +  I  ++K   V+P + T+++ +   A   ++EG   +  +M
Sbjct: 199 VYNEMMTLYISVGELDKVEIIAEELKRQNVSPDLFTYNLRVSAAAASMDLEGFKGILDEM 258

Query: 192 KRSEVEPNE----VSYCILATAHAVA-RLYTVAETYVEALEKSMTGNNWSTLDVLIILYG 246
            +   +PN       Y  LA+ +  A +L     + VEA E  ++   W T D L+IL+ 
Sbjct: 259 SK---DPNSKEGWTLYRNLASVYVDASQLVGSGNSLVEA-EAKISQREWITYDFLVILHA 314

Query: 247 YLAKGKDLERIWAT-VQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLK-AT 304
            L   + ++ IW + V     + S++Y+  I ++    Q+  A E+  + Q  K  +   
Sbjct: 315 GLGNQERIKDIWKSMVMTSQRMTSRNYICVISSYLMCGQLKDAGEIVDQWQRSKAPEFDI 374

Query: 305 EQYNSVISVYCKNGFIDKASGLLKEMSMNGC 335
              N ++      G  D A    + M    C
Sbjct: 375 SACNRLLDALLSAGLTDTADRFRELMLQKSC 405



 Score = 39.3 bits (90), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 24/99 (24%), Positives = 48/99 (48%), Gaps = 2/99 (2%)

Query: 265 PNVRS-KSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKA 323
           P  +S ++Y   + ++GR     +AE L+  M+          YN ++++Y   G +DK 
Sbjct: 157 PGAKSLEAYTALLHSYGRSKMTDKAERLFERMKDANLSMDALVYNEMMTLYISVGELDKV 216

Query: 324 SGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKAL 362
             + +E+      P+  TY +L +    +++  EGFK +
Sbjct: 217 EIIAEELKRQNVSPDLFTY-NLRVSAAAASMDLEGFKGI 254


>gi|413952239|gb|AFW84888.1| hypothetical protein ZEAMMB73_407218 [Zea mays]
          Length = 668

 Score = 78.2 bits (191), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 96/428 (22%), Positives = 169/428 (39%), Gaps = 44/428 (10%)

Query: 45  ALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQGEKLF------CCIPKDYQNELLY 98
           AL +++ ++R R  +P  + Y+ LLE   KN G  Q   +        C P    N + Y
Sbjct: 161 ALSLLDDMLR-RGCQPNVVTYTVLLEAMCKNSGFEQAMAVLDEMRAKGCTP----NIVTY 215

Query: 99  NNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKA 158
           N ++     +G +  + + + ++   G     + +  L+    +  R   +  +  +M  
Sbjct: 216 NVIINGMCREGRVDDARDLLNRLFSYGCQPDTVSYTTLLKGLCASKRWDDVEELFAEMME 275

Query: 159 DKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTV 218
               P+  TF +L++       +E  ++V   M   E   N  + C +   +++ +   V
Sbjct: 276 KNCMPNEVTFDMLIRFFCRGGMVERAIQVLQQMTEHECATN-TTLCNIVI-NSICKQGRV 333

Query: 219 AETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQEL----------PN-V 267
            + +         G N  T+    +L G        ER W   +EL          PN V
Sbjct: 334 DDAFKFLNNMGSYGCNPDTISYTTVLKGLCRA----ER-WNDAKELLKEMVRNNCPPNEV 388

Query: 268 RSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLL 327
              +++  +   G I Q   A  L  +MQ          YN++++ +C  G ID A  L 
Sbjct: 389 TFNTFICILCQKGLIEQ---AIMLIEQMQEHGCTVGVVTYNALVNGFCVQGHIDSALELF 445

Query: 328 KEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSI 387
           + M    CKPN ITY  L  G   +       + L+   +L+     R   P + T   +
Sbjct: 446 RSMP---CKPNTITYTTLLTGLCNA-------ERLDAAAELVAEMLHRDCPPNVVTFNVL 495

Query: 388 IEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKINDP--NLLRRMILGGA 445
           +  F +KG +  A  L E++ +   T     YNTL     K   ++    LL  ++  G 
Sbjct: 496 VNFFCQKGFLDEAIELVEQMMEHGCTPNLITYNTLFDGITKDCSSEDALELLHGLVSKGV 555

Query: 446 RPDAETYS 453
            PD  T+S
Sbjct: 556 SPDVITFS 563



 Score = 76.6 bits (187), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 91/412 (22%), Positives = 175/412 (42%), Gaps = 35/412 (8%)

Query: 59  RPKELDYSYLLEFTIKNHGISQGEKLFC------CIPKDYQNELLYNNLVIACLDKGVIK 112
           +P  + Y+ LL+    +      E+LF       C+P    NE+ ++ L+      G+++
Sbjct: 244 QPDTVSYTTLLKGLCASKRWDDVEELFAEMMEKNCMP----NEVTFDMLIRFFCRGGMVE 299

Query: 113 LSLEYMKKMRVLGHSISYLVFNRLIILNS--SPGRRKTIPNILRQMKADKVAPHVSTFHI 170
            +++ +++M     + +  + N  I++NS    GR       L  M +    P   ++  
Sbjct: 300 RAIQVLQQMTEHECATNTTLCN--IVINSICKQGRVDDAFKFLNNMGSYGCNPDTISYTT 357

Query: 171 LMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSY----CILATAHAVARLYTVAETYVEAL 226
           ++K            ++  +M R+   PNEV++    CIL     + +    A   +E +
Sbjct: 358 VLKGLCRAERWNDAKELLKEMVRNNCPPNEVTFNTFICILCQKGLIEQ----AIMLIEQM 413

Query: 227 EKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELP-NVRSKSYVLAIEAFGRIAQV 285
           ++        T + L+   G+  +G  ++      + +P    + +Y   +       ++
Sbjct: 414 QEHGCTVGVVTYNALV--NGFCVQGH-IDSALELFRSMPCKPNTITYTTLLTGLCNAERL 470

Query: 286 SRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHL 345
             A EL  EM           +N +++ +C+ GF+D+A  L+++M  +GC PN ITY  L
Sbjct: 471 DAAAELVAEMLHRDCPPNVVTFNVLVNFFCQKGFLDEAIELVEQMMEHGCTPNLITYNTL 530

Query: 346 ALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFE 405
             G  K    E+   ALEL   L++    +  +P + T  SII I +++  V  A  +F 
Sbjct: 531 FDGITKDCSSED---ALELLHGLVS----KGVSPDVITFSSIIGILSKEDRVEEAIQMFH 583

Query: 406 ELKKANYTKYTFVYNTLIKAYVKAK--INDPNLLRRMILGGARPDAETYSLL 455
             +         VYN ++    K     N  + L  M+  G  P+  TY +L
Sbjct: 584 LAQDIGMRPKALVYNKILLGLCKRHEIDNAIDFLAYMVSNGCMPNESTYIIL 635



 Score = 75.5 bits (184), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 84/372 (22%), Positives = 142/372 (38%), Gaps = 57/372 (15%)

Query: 125 GHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGL 184
           G  +    +N L+      G       ++  M    VAP   T+  L+++  +   +   
Sbjct: 105 GSPVDVFAYNTLVAGYCRYGHLDAARRLIGSMP---VAPDAYTYTPLIRVLCDRGRVADA 161

Query: 185 MKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLI-- 242
           + +  DM R   +PN V+Y +L  A      +  A   ++ +       N  T +V+I  
Sbjct: 162 LSLLDDMLRRGCQPNVVTYTVLLEAMCKNSGFEQAMAVLDEMRAKGCTPNIVTYNVIING 221

Query: 243 --------------------------ILYGYLAKGKDLERIWATVQEL----------PN 266
                                     + Y  L KG    + W  V+EL          PN
Sbjct: 222 MCREGRVDDARDLLNRLFSYGCQPDTVSYTTLLKGLCASKRWDDVEELFAEMMEKNCMPN 281

Query: 267 VRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGL 326
               ++ + I  F R   V RA ++  +M   +    T   N VI+  CK G +D A   
Sbjct: 282 --EVTFDMLIRFFCRGGMVERAIQVLQQMTEHECATNTTLCNIVINSICKQGRVDDAFKF 339

Query: 327 LKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTL- 385
           L  M   GC P+ I+Y  +  G  ++    +         K +  + VR++ P  E T  
Sbjct: 340 LNNMGSYGCNPDTISYTTVLKGLCRAERWNDA--------KELLKEMVRNNCPPNEVTFN 391

Query: 386 SIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAY-VKAKINDP-NLLRRMILG 443
           + I I  +KG +  A  L E++++   T     YN L+  + V+  I+    L R M   
Sbjct: 392 TFICILCQKGLIEQAIMLIEQMQEHGCTVGVVTYNALVNGFCVQGHIDSALELFRSM--- 448

Query: 444 GARPDAETYSLL 455
             +P+  TY+ L
Sbjct: 449 PCKPNTITYTTL 460



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 63/285 (22%), Positives = 117/285 (41%), Gaps = 30/285 (10%)

Query: 94  NELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNIL 153
           NE+ +N  +     KG+I+ ++  +++M+  G ++  + +N L+      G   +   + 
Sbjct: 386 NEVTFNTFICILCQKGLIEQAIMLIEQMQEHGCTVGVVTYNALVNGFCVQGHIDSALELF 445

Query: 154 RQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVA 213
           R M      P+  T+  L+    N   ++   ++ ++M   +  PN V++ +L       
Sbjct: 446 RSMPCK---PNTITYTTLLTGLCNAERLDAAAELVAEMLHRDCPPNVVTFNVLVNFFCQK 502

Query: 214 RLYTVAETYVEAL-EKSMTGN-------------NWSTLDVLIILYGYLAKGKDLERIWA 259
                A   VE + E   T N             + S+ D L +L+G ++KG        
Sbjct: 503 GFLDEAIELVEQMMEHGCTPNLITYNTLFDGITKDCSSEDALELLHGLVSKGVS------ 556

Query: 260 TVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGF 319
                P+V + S ++ I    +  +V  A +++   Q +        YN ++   CK   
Sbjct: 557 -----PDVITFSSIIGI--LSKEDRVEEAIQMFHLAQDIGMRPKALVYNKILLGLCKRHE 609

Query: 320 IDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALEL 364
           ID A   L  M  NGC PN  TY  L  G  +  L++E    L +
Sbjct: 610 IDNAIDFLAYMVSNGCMPNESTYIILIEGLAREGLLKEAQDLLSM 654


>gi|168052517|ref|XP_001778696.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162669911|gb|EDQ56489.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 799

 Score = 78.2 bits (191), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 86/373 (23%), Positives = 164/373 (43%), Gaps = 31/373 (8%)

Query: 99  NNLVIACLDK-GVIKLSLEYMKKMRVL-GHSISYLVFNRLIILNSSPGRRKTIPNILRQM 156
           +N+++ CL K G  + ++   K+MR + G     + FN L+ + +  G+          M
Sbjct: 232 HNIILNCLTKLGRFEDAINLFKEMRKMNGCEPDVVTFNALLHVYALCGQITKAQETFDMM 291

Query: 157 KADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLY 216
             + +AP + TF+ L+   A+       ++V   + +++ EP+ VSY  L  A   A   
Sbjct: 292 IGEGMAPTIVTFNTLLGAYASQGMYTEALQVVGLLVKAKFEPDVVSYSSLLNAFGKAGYP 351

Query: 217 TVAETYVEALEKSMTGNNWSTLDVLIILY---GYLAKGKDLERIWATVQELPNVRSKSYV 273
             A+   + +++     N  T + L+  Y   G   + ++L    A  +  PNV +   +
Sbjct: 352 EKAQEVFDLMKQRSRKPNLVTFNGLMDAYASAGKYERARELLHDMAEARIEPNVVTICSL 411

Query: 274 LAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMN 333
            A  A  R  +  R  +++ E +  +       +N+ I+ Y + G  D+A  LL+ M   
Sbjct: 412 FAACARARCPEKVR--DVFHEAKVRQIALNVPAFNAAITAYIEAGQFDEAKALLEVMEEQ 469

Query: 334 GCKPNAITYRHL-----ALGCFKS--NLVEEGFKALELGMKLITTKKVRSSTPWLETTLS 386
             +PN +T+  L     +LG ++    L +   K ++LG+ L            +E   +
Sbjct: 470 NLRPNGVTFLLLINAAGSLGDYREARTLYD---KMVDLGIPLT-----------VEPCSA 515

Query: 387 IIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKINDPNL-LRRMILGGA 445
           +I  FA+ G    A  +F++++KA        Y +L+ AY     +D  L    M+  G 
Sbjct: 516 LINAFAKHGMYNEARTIFDDMRKAGCKANVVTYTSLMIAY--RMYDDAQLACEEMVAAGI 573

Query: 446 RPDAETYSLLKLA 458
            PD+  +  L +A
Sbjct: 574 TPDSIAFGTLFVA 586



 Score = 62.0 bits (149), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 60/255 (23%), Positives = 111/255 (43%), Gaps = 7/255 (2%)

Query: 98  YNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMK 157
           +N L+ A   +G+   +L+ +  +         + ++ L+      G  +    +   MK
Sbjct: 303 FNTLLGAYASQGMYTEALQVVGLLVKAKFEPDVVSYSSLLNAFGKAGYPEKAQEVFDLMK 362

Query: 158 ADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARL-Y 216
                P++ TF+ LM   A+    E   ++  DM  + +EPN V+ C L  A A AR   
Sbjct: 363 QRSRKPNLVTFNGLMDAYASAGKYERARELLHDMAEARIEPNVVTICSLFAACARARCPE 422

Query: 217 TVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGK-DLERIWATVQELPNVRSK--SYV 273
            V + + EA  + +   N    +  I    Y+  G+ D  +    V E  N+R    +++
Sbjct: 423 KVRDVFHEAKVRQI-ALNVPAFNAAIT--AYIEAGQFDEAKALLEVMEEQNLRPNGVTFL 479

Query: 274 LAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMN 333
           L I A G +     A  L+ +M  +      E  +++I+ + K+G  ++A  +  +M   
Sbjct: 480 LLINAAGSLGDYREARTLYDKMVDLGIPLTVEPCSALINAFAKHGMYNEARTIFDDMRKA 539

Query: 334 GCKPNAITYRHLALG 348
           GCK N +TY  L + 
Sbjct: 540 GCKANVVTYTSLMIA 554



 Score = 55.5 bits (132), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 68/332 (20%), Positives = 134/332 (40%), Gaps = 13/332 (3%)

Query: 98  YNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMK 157
           YNNL+ AC   G    +LE  K+M   G     + +N ++    S G+ +        + 
Sbjct: 162 YNNLINACGSSGQWFKALEICKRMTDNGVGPDLMTYNIILSAFKSGGQPRHAVAYYDHLI 221

Query: 158 ADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKR-SEVEPNEVSYCILATAHAVARLY 216
           + KV     + +I++         E  + ++ +M++ +  EP+ V++  L   +A+    
Sbjct: 222 SKKVPLDRYSHNIILNCLTKLGRFEDAINLFKEMRKMNGCEPDVVTFNALLHVYALCGQI 281

Query: 217 TVAETYVEALEKSMTGNNWSTLDVLIILY---GYLAKGKDLERIWATVQELPNVRSKSYV 273
           T A+   + +          T + L+  Y   G   +   +  +    +  P+V S S +
Sbjct: 282 TKAQETFDMMIGEGMAPTIVTFNTLLGAYASQGMYTEALQVVGLLVKAKFEPDVVSYSSL 341

Query: 274 LAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMN 333
           L   AFG+     +A+E++  M+   +      +N ++  Y   G  ++A  LL +M+  
Sbjct: 342 L--NAFGKAGYPEKAQEVFDLMKQRSRKPNLVTFNGLMDAYASAGKYERARELLHDMAEA 399

Query: 334 GCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAE 393
             +PN +T   L   C ++   E+          +    KVR     +    + I  + E
Sbjct: 400 RIEPNVVTICSLFAACARARCPEK-------VRDVFHEAKVRQIALNVPAFNAAITAYIE 452

Query: 394 KGDVGNAENLFEELKKANYTKYTFVYNTLIKA 425
            G    A+ L E +++ N       +  LI A
Sbjct: 453 AGQFDEAKALLEVMEEQNLRPNGVTFLLLINA 484



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 67/306 (21%), Positives = 121/306 (39%), Gaps = 54/306 (17%)

Query: 132 VFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDM 191
           ++N +I L++   R      +  +MK  +  P V T++ LM +          ++++ DM
Sbjct: 89  IYNCMIWLHARHQRADQARGLFYEMKVWRCKPDVETYNALMNVHGRAGQWRWALQIFDDM 148

Query: 192 KRS--EVEPNEVSYCILATAHAVARLYTVAETYVEALE--KSMTGNNWSTLDVLIILYGY 247
            ++   + P+  SY  L  A         +  + +ALE  K MT N              
Sbjct: 149 LQAPKPIAPSRSSYNNLINACG------SSGQWFKALEICKRMTDN-------------- 188

Query: 248 LAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQY 307
              G DL                +Y + + AF    Q   A   +  + S K       +
Sbjct: 189 -GVGPDL---------------MTYNIILSAFKSGGQPRHAVAYYDHLISKKVPLDRYSH 232

Query: 308 NSVISVYCKNGFIDKASGLLKEM-SMNGCKPNAITYR---HLALGCFKSNLVEEGFKALE 363
           N +++   K G  + A  L KEM  MNGC+P+ +T+    H+   C +    +E F  + 
Sbjct: 233 NIILNCLTKLGRFEDAINLFKEMRKMNGCEPDVVTFNALLHVYALCGQITKAQETFDMM- 291

Query: 364 LGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLI 423
           +G  +          P + T  +++  +A +G    A  +   L KA +      Y++L+
Sbjct: 292 IGEGM---------APTIVTFNTLLGAYASQGMYTEALQVVGLLVKAKFEPDVVSYSSLL 342

Query: 424 KAYVKA 429
            A+ KA
Sbjct: 343 NAFGKA 348



 Score = 39.3 bits (90), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 52/205 (25%), Positives = 88/205 (42%), Gaps = 16/205 (7%)

Query: 258 WATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKN 317
           W   Q+    R+  Y   I    R  +  +A  L+ EM+  +     E YN++++V+ + 
Sbjct: 76  WMKNQKCYRARTDIYNCMIWLHARHQRADQARGLFYEMKVWRCKPDVETYNALMNVHGRA 135

Query: 318 GFIDKASGLLKEM--SMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVR 375
           G    A  +  +M  +     P+  +Y +L   C  S    + FKALE+  K +T   V 
Sbjct: 136 GQWRWALQIFDDMLQAPKPIAPSRSSYNNLINACGSSG---QWFKALEI-CKRMTDNGV- 190

Query: 376 SSTPWLETTLSIIEIFAEKGDVGNAENLFEEL--KKANYTKYTFVYNTLIKAYVK-AKIN 432
              P L T   I+  F   G   +A   ++ L  KK    +Y+  +N ++    K  +  
Sbjct: 191 --GPDLMTYNIILSAFKSGGQPRHAVAYYDHLISKKVPLDRYS--HNIILNCLTKLGRFE 246

Query: 433 DP-NLLRRM-ILGGARPDAETYSLL 455
           D  NL + M  + G  PD  T++ L
Sbjct: 247 DAINLFKEMRKMNGCEPDVVTFNAL 271


>gi|297808773|ref|XP_002872270.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297318107|gb|EFH48529.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 492

 Score = 78.2 bits (191), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 89/379 (23%), Positives = 162/379 (42%), Gaps = 7/379 (1%)

Query: 5   PRGEPVGSAFQSWMREGFPVHRGEIFHSINRLRKLQLNKRALEVMEWVIRERPYRPKELD 64
           PR   V S  Q  +  G  V   E+     RL +      AL+++EW+  ++  +    D
Sbjct: 47  PR-RSVTSLLQERIDSGHAVALSELRFISKRLIRSNRYDLALQMIEWMENQKEIQFSVYD 105

Query: 65  YSYLLEFTIKNHGISQGEKLFCCIPKDYQN----ELLYNNLVIACLDKGVIKLSLEYMKK 120
            S  LE  IK HG+ Q E+ F  +     +    +  Y  L+ + + K ++K    +M+K
Sbjct: 106 ISLRLELIIKTHGLKQAEEYFEKLLNSSASLRVAKSAYLPLLRSYVKKKMVKEGEVFMEK 165

Query: 121 MRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHN 180
           +  LG  ++   FN ++ L  + G+ + +  ++  MK +K+  +V ++++ M        
Sbjct: 166 LNGLGFLVTPHPFNEMMKLYEASGQYEKVVMVVSMMKVNKIPRNVLSYNLWMNACCQVSG 225

Query: 181 IEGLMKVYSDM-KRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLD 239
           +  +  VY +M     VE    S C LA  +        A+  +E  EK +  +N     
Sbjct: 226 VTAVETVYREMVGDKSVEVGWSSLCTLANVYIKGGFDEKAKLVLENAEKLLNRSNRLGYF 285

Query: 240 VLIILYGYLAKGKDLERIW-ATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSV 298
            LI LY  L   + + R+W A+      +   +Y+  + +  +I  +  AE ++ E ++ 
Sbjct: 286 FLITLYASLGDKEGVVRLWEASKLVCGRISCANYICVLSSLVKIGDLEEAERVFNEWEAQ 345

Query: 299 KQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEG 358
                    N ++  Y +NG I KA  L   +   G  PN  T+  L  G  K   +E+ 
Sbjct: 346 CFNYDVRVSNVLLGAYMRNGEIRKAESLHARVLERGGNPNYKTWEILMEGWVKCQSMEKA 405

Query: 359 FKALELGMKLITTKKVRSS 377
             A+    +L+     R S
Sbjct: 406 IVAMHRAFELMKGCHWRPS 424


>gi|414886512|tpg|DAA62526.1| TPA: hypothetical protein ZEAMMB73_338715 [Zea mays]
          Length = 901

 Score = 78.2 bits (191), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 84/375 (22%), Positives = 150/375 (40%), Gaps = 42/375 (11%)

Query: 89  PKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKT 148
           P+  +  + YN L+      G +K +L+    M   G       FN LI +    G    
Sbjct: 258 PRKPKLVVTYNVLIDLYGKAGKLKNALDMFLDMPAHGVMPDTYTFNTLINIFGFSGNSAQ 317

Query: 149 IPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILAT 208
              +   M    V P   T++++M + A+  ++EG++K Y  ++ + + P+ V+Y IL  
Sbjct: 318 AEVLFASMVIRGVKPDTKTYNVMMTVFASIGDLEGVLKYYCQIRNAGLHPDAVTYRILLQ 377

Query: 209 AHAVARLYTVAETYVEAL--------------------------------EKSMTGNNWS 236
                ++   AE  +E +                                EK   G   S
Sbjct: 378 VLCERKMVHKAEDVIEGILKAGSFVHEQSLPVVMKMYVDLGLLDEAIAFFEKHCRGKGVS 437

Query: 237 TLDVLIILYGYLAKG--KDLERIWATVQELPNVRS-KSYVLAIEAFGRIAQVSRAEELWL 293
           + +   I+  +  +G  ++ E I+ + +   N +    Y + I+A+G+  Q  R   L+ 
Sbjct: 438 SKNFSAIMDVFAGRGLWEEAEHIFCSERGDGNEKDIVEYNVMIKAYGQAKQYDRVSSLFE 497

Query: 294 EMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSN 353
            M+          YNS+I ++   GF  +A  LL +M   G +P   TY  +     +  
Sbjct: 498 SMEESGVPSDECTYNSLIQMFSFGGFPHRAKKLLGKMKDAGFEPKCETYSAIIRSYSRHC 557

Query: 354 LVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYT 413
           LV E        + L    K     P +     +I++FAE G+V  A +    L+++  +
Sbjct: 558 LVPE-------AIDLFNEMKASGVEPNVIVYGILIDMFAETGNVKEALHYSNLLEQSGIS 610

Query: 414 KYTFVYNTLIKAYVK 428
               V  +LIKAY K
Sbjct: 611 PNHIVLTSLIKAYSK 625



 Score = 48.1 bits (113), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 50/258 (19%), Positives = 110/258 (42%), Gaps = 9/258 (3%)

Query: 88  IPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRK 147
           +P D   E  YN+L+      G    + + + KM+  G       ++ +I    S  R  
Sbjct: 504 VPSD---ECTYNSLIQMFSFGGFPHRAKKLLGKMKDAGFEPKCETYSAII---RSYSRHC 557

Query: 148 TIP---NILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYC 204
            +P   ++  +MKA  V P+V  + IL+ + A   N++  +   + +++S + PN +   
Sbjct: 558 LVPEAIDLFNEMKASGVEPNVIVYGILIDMFAETGNVKEALHYSNLLEQSGISPNHIVLT 617

Query: 205 ILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQEL 264
            L  A++    +  A+     +     G +    + ++ LY  L    + + I+ +++  
Sbjct: 618 SLIKAYSKFNSWKEAQDLYSRMNDMDGGPDIIASNAMLNLYAKLEMVTEAKEIFDSLRRN 677

Query: 265 PNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKAS 324
            +  + SY      +  I  +S +  +  ++Q    L      N+V++ Y   G +   +
Sbjct: 678 NHADAVSYTTMAYLYKSIGLLSESIRITHKLQKSGLLSDCASCNAVMACYGAKGNLRDCA 737

Query: 325 GLLKEMSMNGCKPNAITY 342
            L+ +M +    P+A T+
Sbjct: 738 ELVHQMVVANIPPDASTF 755


>gi|224100421|ref|XP_002311869.1| predicted protein [Populus trichocarpa]
 gi|222851689|gb|EEE89236.1| predicted protein [Populus trichocarpa]
          Length = 470

 Score = 78.2 bits (191), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 78/358 (21%), Positives = 161/358 (44%), Gaps = 26/358 (7%)

Query: 109 GVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTF 168
           G ++  L+ +++M++ G   +   +N +I+L    G+      +LR+M    + P    +
Sbjct: 24  GELQKVLKLIQEMQMKGLKPNLYTYNSIILLLCKSGKVDDAERVLREMINQGIVPDTVVY 83

Query: 169 HILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSY-CILATAHAVARLYTVAETYVEALE 227
             L+       NI+   K++ +M++  + P+ ++Y  ++       ++    + + +   
Sbjct: 84  TTLIDGFCKLGNIQAAYKLFDEMEKQRIVPDFIAYTAVICGLCRCGKMMEADKVFNKMFS 143

Query: 228 KSMTGN--NWSTLDVLIILYGYLAKGKDLERIWATVQEL------PNVRSKSYVLAIEAF 279
           + +  +   ++TL     + GY   G ++E+ ++   ++      PNV   +Y    +  
Sbjct: 144 RGVEPDEVTYTTL-----IDGYCKSG-EMEKAFSLHNQMVQSGLTPNVV--TYTALADGL 195

Query: 280 GRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNA 339
            ++ QV  A EL  EM           YNS+++  CK+G I +A  L++EM + G  P+ 
Sbjct: 196 CKLGQVDTANELLHEMCGKGLQLNICTYNSLVNGLCKSGNIRQAVKLMEEMEVAGMYPDT 255

Query: 340 ITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGN 399
           IT+  L     K+    E  KA EL  +++     R   P + T   ++  F   G + +
Sbjct: 256 ITFTTLMDAYCKTG---EMVKAHELLREMLD----RGLQPTVITFNVLMNGFCMSGMLED 308

Query: 400 AENLFEELKKANYTKYTFVYNTLIKAY-VKAKIN-DPNLLRRMILGGARPDAETYSLL 455
            E L   + +      T  YN+L+K Y ++  +     + + M   G  PD+ TY++L
Sbjct: 309 GERLLAWMLEKGIMPNTTTYNSLMKQYCIRNNMRCTTEIYKGMCARGVMPDSNTYNIL 366



 Score = 56.6 bits (135), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 44/151 (29%), Positives = 71/151 (47%), Gaps = 9/151 (5%)

Query: 307 YNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGM 366
           Y++VI+ YC  G + K   L++EM M G KPN  TY  + L   KS  V++  + L    
Sbjct: 13  YSTVINGYCLGGELQKVLKLIQEMQMKGLKPNLYTYNSIILLLCKSGKVDDAERVLR--- 69

Query: 367 KLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAY 426
           ++I    V  +  +  TTL  I+ F + G++  A  LF+E++K         Y  +I   
Sbjct: 70  EMINQGIVPDTVVY--TTL--IDGFCKLGNIQAAYKLFDEMEKQRIVPDFIAYTAVICGL 125

Query: 427 VKAK--INDPNLLRRMILGGARPDAETYSLL 455
            +    +    +  +M   G  PD  TY+ L
Sbjct: 126 CRCGKMMEADKVFNKMFSRGVEPDEVTYTTL 156



 Score = 46.6 bits (109), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 55/241 (22%), Positives = 104/241 (43%), Gaps = 9/241 (3%)

Query: 94  NELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNIL 153
           N   YN+LV      G I+ +++ M++M V G     + F  L+      G       +L
Sbjct: 219 NICTYNSLVNGLCKSGNIRQAVKLMEEMEVAGMYPDTITFTTLMDAYCKTGEMVKAHELL 278

Query: 154 RQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAV- 212
           R+M    + P V TF++LM        +E   ++ + M    + PN  +Y  L   + + 
Sbjct: 279 REMLDRGLQPTVITFNVLMNGFCMSGMLEDGERLLAWMLEKGIMPNTTTYNSLMKQYCIR 338

Query: 213 ARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELP----NVR 268
             +    E Y     + +  ++ +T ++LI  +    K ++++  W   +E+     N+ 
Sbjct: 339 NNMRCTTEIYKGMCARGVMPDS-NTYNILIKGH---CKARNMKEAWFLHKEMAEKGFNLT 394

Query: 269 SKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLK 328
           + SY   I+ F +  ++S A EL+ EM+        E YN  + +    G ++ A  L  
Sbjct: 395 ASSYNSIIKGFFKKKKISEARELFEEMRREGMAADAEIYNLFVDISYGEGNMETALELCD 454

Query: 329 E 329
           E
Sbjct: 455 E 455


>gi|293333246|ref|NP_001169278.1| uncharacterized protein LOC100383141 [Zea mays]
 gi|224028343|gb|ACN33247.1| unknown [Zea mays]
          Length = 901

 Score = 78.2 bits (191), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 84/375 (22%), Positives = 150/375 (40%), Gaps = 42/375 (11%)

Query: 89  PKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKT 148
           P+  +  + YN L+      G +K +L+    M   G       FN LI +    G    
Sbjct: 258 PRKPKLVVTYNVLIDLYGKAGKLKNALDMFLDMPAHGVMPDTYTFNTLINIFGFSGNSAQ 317

Query: 149 IPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILAT 208
              +   M    V P   T++++M + A+  ++EG++K Y  ++ + + P+ V+Y IL  
Sbjct: 318 AEVLFASMVIRGVKPDTKTYNVMMTVFASIGDLEGVLKYYCQIRNAGLHPDAVTYRILLQ 377

Query: 209 AHAVARLYTVAETYVEAL--------------------------------EKSMTGNNWS 236
                ++   AE  +E +                                EK   G   S
Sbjct: 378 VLCERKMVHKAEDVIEGILKAGSFVHEQSLPVVMKMYVDLGLLDEAIAFFEKHCRGKGVS 437

Query: 237 TLDVLIILYGYLAKG--KDLERIWATVQELPNVRS-KSYVLAIEAFGRIAQVSRAEELWL 293
           + +   I+  +  +G  ++ E I+ + +   N +    Y + I+A+G+  Q  R   L+ 
Sbjct: 438 SKNFSAIMDVFAGRGLWEEAEHIFCSERGDGNEKDIVEYNVMIKAYGQAKQYDRVSSLFE 497

Query: 294 EMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSN 353
            M+          YNS+I ++   GF  +A  LL +M   G +P   TY  +     +  
Sbjct: 498 SMEESGVPSDECTYNSLIQMFSFGGFPHRAKKLLGKMKDAGFEPKCETYSAIIRSYSRHC 557

Query: 354 LVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYT 413
           LV E        + L    K     P +     +I++FAE G+V  A +    L+++  +
Sbjct: 558 LVPE-------AIDLFNEMKASGVEPNVIVYGILIDMFAETGNVKEALHYSNLLEQSGIS 610

Query: 414 KYTFVYNTLIKAYVK 428
               V  +LIKAY K
Sbjct: 611 PNHIVLTSLIKAYSK 625



 Score = 48.1 bits (113), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 50/258 (19%), Positives = 110/258 (42%), Gaps = 9/258 (3%)

Query: 88  IPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRK 147
           +P D   E  YN+L+      G    + + + KM+  G       ++ +I    S  R  
Sbjct: 504 VPSD---ECTYNSLIQMFSFGGFPHRAKKLLGKMKDAGFEPKCETYSAII---RSYSRHC 557

Query: 148 TIP---NILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYC 204
            +P   ++  +MKA  V P+V  + IL+ + A   N++  +   + +++S + PN +   
Sbjct: 558 LVPEAIDLFNEMKASGVEPNVIVYGILIDMFAETGNVKEALHYSNLLEQSGISPNHIVLT 617

Query: 205 ILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQEL 264
            L  A++    +  A+     +     G +    + ++ LY  L    + + I+ +++  
Sbjct: 618 SLIKAYSKFNSWKEAQDLYSRMNDMDGGPDIIASNAMLNLYAKLEMVTEAKEIFDSLRRN 677

Query: 265 PNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKAS 324
            +  + SY      +  I  +S +  +  ++Q    L      N+V++ Y   G +   +
Sbjct: 678 NHADAVSYTTMAYLYKSIGLLSESIRITHKLQKSGLLSDCASCNAVMACYGAKGNLRDCA 737

Query: 325 GLLKEMSMNGCKPNAITY 342
            L+ +M +    P+A T+
Sbjct: 738 ELVHQMVVANIPPDASTF 755


>gi|413955492|gb|AFW88141.1| hypothetical protein ZEAMMB73_138069 [Zea mays]
          Length = 1091

 Score = 78.2 bits (191), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 80/358 (22%), Positives = 147/358 (41%), Gaps = 10/358 (2%)

Query: 94  NELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNIL 153
           N   YN L+   +  G    ++E  K M   G S S   ++ L++         T+  +L
Sbjct: 170 NAYTYNGLIYFLVKSGFDAEAMEVYKAMVEDGISPSVRTYSVLMVAFGKKRDVDTVLWLL 229

Query: 154 RQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVA 213
            +M+A  V P+V ++ I +++       +    +   M+ S  +P+ V++ ++      A
Sbjct: 230 NEMEARGVKPNVYSYTICIRVLGQAARFDEAYHILGKMEDSGCKPDVVTHTVIIQVLCDA 289

Query: 214 RLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIW-ATVQELPNVRSKSY 272
              + A+     ++ S    +  T   L+   G     + +  +W A V +  N    SY
Sbjct: 290 GRLSDAKAVFWKMKASDQKPDRVTYITLLDKCGDSGDSQSVVEVWNAMVADGYNDNIVSY 349

Query: 273 VLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSM 332
              ++A  ++ +V  A  ++ EM+          YNS+IS + K    D+A  L   M  
Sbjct: 350 TAVVDALCQVGRVDEALAVFDEMKEKGMSPEQYSYNSLISGFLKADMFDRALELFNHM-- 407

Query: 333 NGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFA 392
           N C P+   Y H+       N   +  ++L+  ++     K +   P +    +++   A
Sbjct: 408 NACGPSPNGYTHVLF----INYYGKSGQSLK-AIQRYEHMKSKGIVPDVAAANAVLYSLA 462

Query: 393 EKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKINDP--NLLRRMILGGARPD 448
             G +G A+ +F ELK    +  T  Y  +IK   KA   D   N    M+  G  PD
Sbjct: 463 GSGRLGMAKRVFYELKAMGVSPDTITYTMMIKCCSKASKADEAMNFFSDMVESGCVPD 520



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 65/304 (21%), Positives = 123/304 (40%), Gaps = 19/304 (6%)

Query: 98  YNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILR--Q 155
           YN+L+   L   +   +LE    M   G S +   +  ++ +N      +++  I R   
Sbjct: 384 YNSLISGFLKADMFDRALELFNHMNACGPSPN--GYTHVLFINYYGKSGQSLKAIQRYEH 441

Query: 156 MKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARL 215
           MK+  + P V+  + ++   A    +    +V+ ++K   V P+ ++Y ++    + A  
Sbjct: 442 MKSKGIVPDVAAANAVLYSLAGSGRLGMAKRVFYELKAMGVSPDTITYTMMIKCCSKASK 501

Query: 216 YTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVR----SKS 271
              A  +   + +S    +   L+ LI     L KG      W    +L  ++    + +
Sbjct: 502 ADEAMNFFSDMVESGCVPDVLALNSLI---DTLYKGGKGNEAWQLFHKLKEMKIEPTNGT 558

Query: 272 YVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMS 331
           Y   +   GR  +V    +L  EM           YN+V+    KNG ++ A  +L  M+
Sbjct: 559 YNTLLSGLGREGKVKEVMQLLEEMTRTIYPPNLITYNTVLDCLSKNGEVNCAIDMLYSMT 618

Query: 332 MNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIF 391
             GC P+  +Y  +  G  K   +EE F+           KK+ +  P   T  +I+  F
Sbjct: 619 EKGCAPDLSSYNTVMYGLIKEERLEEAFRM------FCQMKKILA--PDYATLCTILPSF 670

Query: 392 AEKG 395
            + G
Sbjct: 671 VKNG 674



 Score = 58.5 bits (140), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 80/346 (23%), Positives = 138/346 (39%), Gaps = 22/346 (6%)

Query: 116  EYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIE 175
            +   K + LG S+    +N LI             ++  +MK     P   T+++++   
Sbjct: 752  QLFNKFKGLGVSLKTGSYNSLIRGLVDENLIDIAEDLFTEMKRLGCGPDEFTYNLILDAM 811

Query: 176  ANDHNIEGLMKVYSDMKRSEVEPNEVSY-CILATAHAVARLYTVAETYVEALEKSMTGNN 234
                 +E ++KV  +M R   E   V+Y  I++      RL    + Y   + +   G +
Sbjct: 812  GKSMRVEEMLKVQKEMHRKGYESTYVTYNTIISGLVKSKRLEQAIDLYYNLMSE---GFS 868

Query: 235  WSTLDVLIILYGYLAKGK--DLERIWATVQEL---PNVRSKSYVL-AIEAFGRIAQVSRA 288
             +      +L G L  GK  D E ++  + E    PN    + +L      G    V + 
Sbjct: 869  PTPCTYGPLLDGLLKSGKMVDAENLFNEMLEYGCEPNCTIYNILLNGHRIAGNTENVCQL 928

Query: 289  EELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALG 348
             E  +E      +K+   Y  +I   C  G ++      +++   G +P+ I Y  L  G
Sbjct: 929  FEKMVEQGINPDIKS---YTILIDTLCTAGRLNDGLCYFRQLHELGLEPDLIVYNLLIDG 985

Query: 349  CFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELK 408
              KS  +EE        + L    K +   P L T  S+I    + G    A  ++EEL 
Sbjct: 986  LGKSERIEEA-------VSLFNEMKKKGIIPNLYTYNSLILHLGKAGKAAEAAQMYEELL 1038

Query: 409  KANYTKYTFVYNTLIKAYVKAKINDPNLLR--RMILGGARPDAETY 452
            +  +    F YN LI+ Y  +   D       +MI+GG +P++ TY
Sbjct: 1039 RKGWKPSVFTYNALIRGYSVSGSTDNAYAAYGQMIVGGCQPNSSTY 1084



 Score = 44.7 bits (104), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 76/367 (20%), Positives = 145/367 (39%), Gaps = 49/367 (13%)

Query: 94  NELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNIL 153
           + + Y  ++  C        ++ +   M   G     L  N LI      G+      + 
Sbjct: 485 DTITYTMMIKCCSKASKADEAMNFFSDMVESGCVPDVLALNSLIDTLYKGGKGNEAWQLF 544

Query: 154 RQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVA 213
            ++K  K+ P   T++ L+     +  ++ +M++  +M R+   PN ++Y          
Sbjct: 545 HKLKEMKIEPTNGTYNTLLSGLGREGKVKEVMQLLEEMTRTIYPPNLITY---------- 594

Query: 214 RLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSKSYV 273
                  T ++ L K+  G     +D   +LY    KG             P++ S + V
Sbjct: 595 ------NTVLDCLSKN--GEVNCAID---MLYSMTEKGC-----------APDLSSYNTV 632

Query: 274 LAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYN--SVISVYCKNGFIDKASGLLKEMS 331
           +    +G I +  R EE +     +K++ A +     +++  + KNG + +A   +KE  
Sbjct: 633 M----YGLIKE-ERLEEAFRMFCQMKKILAPDYATLCTILPSFVKNGLMKEALHTVKEYI 687

Query: 332 MN-GCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEI 390
           +  GC  +  ++  L  G  K   VE   K++E     I ++ +  +  +L     +I  
Sbjct: 688 LKAGCNVDKSSFHSLMEGILKKAGVE---KSIEFAEN-IASRGILLNDFFL---CPLIRH 740

Query: 391 FAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKIND--PNLLRRMILGGARPD 448
             +      A  LF + K    +  T  YN+LI+  V   + D   +L   M   G  PD
Sbjct: 741 LCKHKKALEAHQLFNKFKGLGVSLKTGSYNSLIRGLVDENLIDIAEDLFTEMKRLGCGPD 800

Query: 449 AETYSLL 455
             TY+L+
Sbjct: 801 EFTYNLI 807



 Score = 42.4 bits (98), Expect = 0.54,   Method: Compositional matrix adjust.
 Identities = 74/357 (20%), Positives = 139/357 (38%), Gaps = 54/357 (15%)

Query: 36   LRKLQLNKRALEVMEWV--IRERPYRPKELDYSYLLEFTIKNHGISQGEKLFC------C 87
            +R L  +K+ALE  +     +      K   Y+ L+   +  + I   E LF       C
Sbjct: 738  IRHLCKHKKALEAHQLFNKFKGLGVSLKTGSYNSLIRGLVDENLIDIAEDLFTEMKRLGC 797

Query: 88   IPKDYQNELLYNNLVIACLDKGV-IKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRR 146
             P    +E  YN L++  + K + ++  L+  K+M   G+  +Y+ +N +I       R 
Sbjct: 798  GP----DEFTYN-LILDAMGKSMRVEEMLKVQKEMHRKGYESTYVTYNTIISGLVKSKRL 852

Query: 147  KTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCIL 206
            +   ++   + ++  +P   T+  L+        +     ++++M     EPN   Y IL
Sbjct: 853  EQAIDLYYNLMSEGFSPTPCTYGPLLDGLLKSGKMVDAENLFNEMLEYGCEPNCTIYNIL 912

Query: 207  ATAHAVA-RLYTVAETYVEALEKSMTGN--NWSTLDVLIILYGYLAKGKDLERIWATVQE 263
               H +A     V + + + +E+ +  +  +++ L   +   G L  G    R    +  
Sbjct: 913  LNGHRIAGNTENVCQLFEKMVEQGINPDIKSYTILIDTLCTAGRLNDGLCYFRQLHELGL 972

Query: 264  LPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVI------------ 311
             P++    Y L I+  G+  ++  A  L+ EM+    +     YNS+I            
Sbjct: 973  EPDL--IVYNLLIDGLGKSERIEEAVSLFNEMKKKGIIPNLYTYNSLILHLGKAGKAAEA 1030

Query: 312  --------------SVYCKNGFI---------DKASGLLKEMSMNGCKPNAITYRHL 345
                          SV+  N  I         D A     +M + GC+PN+ TY  L
Sbjct: 1031 AQMYEELLRKGWKPSVFTYNALIRGYSVSGSTDNAYAAYGQMIVGGCQPNSSTYMQL 1087


>gi|302763321|ref|XP_002965082.1| hypothetical protein SELMODRAFT_83088 [Selaginella moellendorffii]
 gi|300167315|gb|EFJ33920.1| hypothetical protein SELMODRAFT_83088 [Selaginella moellendorffii]
          Length = 731

 Score = 78.2 bits (191), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 80/380 (21%), Positives = 156/380 (41%), Gaps = 12/380 (3%)

Query: 82  EKLFCCIPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNS 141
           E L     K  +N   YN ++    +        +   +M   G  ++ + FN +I +  
Sbjct: 216 ENLVDGTTKRPENPETYNTMISFYGEHAKFAEGSKVFAEMMKAGVELTTVTFNAMIHVYG 275

Query: 142 SPGRRKTIPNILRQMKADK-VAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNE 200
             GR +    ++  MK  K   P V+T++ L+++   +  +E +      M+ S V  ++
Sbjct: 276 KAGRTREAELLVTNMKQRKDCCPDVATYNSLIEMYVKNDKLELVSGCLERMRDSGVSADQ 335

Query: 201 VSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWAT 260
           V++  L +A+A   +   AE  V+ +E S    + +   V+I +Y         E ++  
Sbjct: 336 VTFRTLISAYAANNVVWKAEALVQEMEGSGFLIDQAMYTVMIAMYVRARDVPKAESVFRF 395

Query: 261 VQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFI 320
           +     +   +YV  ++ +     + +A E++ E+     LK    YN ++  Y      
Sbjct: 396 LHSRGGLEVSTYVGVMDVYAEHKCLDQAREVF-ELAKNAGLKTPSLYNVMMKAYGACDRF 454

Query: 321 DKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPW 380
             A  + + M  +G  PN  ++  L     K  L       LE+  +++   K     P 
Sbjct: 455 TDAVTVFEAMEKDGASPNEASFNSLIQLLCKGRL-------LEILQRVLVLVKAAGFKPS 507

Query: 381 LETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKI--NDPNLLR 438
           L +  S++  + + G V  AE +F+E+  +        Y+ L+ AY +A         L 
Sbjct: 508 LASCSSVVSFYGDMGRVREAERVFKEMLASGVEADVICYSALLNAYAEAGFAREAQQTLD 567

Query: 439 RMILGGARPDAETY-SLLKL 457
            +   G  PD   Y S++KL
Sbjct: 568 SLKAAGFVPDTIVYTSMMKL 587



 Score = 53.1 bits (126), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 78/384 (20%), Positives = 165/384 (42%), Gaps = 36/384 (9%)

Query: 60  PKELDYSYLLEFTIKNHGISQGEKLFCCIPKDYQ-----NELLYNNLVIACLDKGVIKLS 114
           P    Y+ L+E  +KN  +   E +  C+ +        +++ +  L+ A     V+  +
Sbjct: 298 PDVATYNSLIEMYVKNDKL---ELVSGCLERMRDSGVSADQVTFRTLISAYAANNVVWKA 354

Query: 115 LEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIP---NILRQMKADKVAPHVSTFHIL 171
              +++M   G  I   ++  +I +     R + +P   ++ R + + +    VST+  +
Sbjct: 355 EALVQEMEGSGFLIDQAMYTVMIAMYV---RARDVPKAESVFRFLHS-RGGLEVSTYVGV 410

Query: 172 MKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMT 231
           M + A    ++   +V+   K + ++   + Y ++  A+     +T A T  EA+EK   
Sbjct: 411 MDVYAEHKCLDQAREVFELAKNAGLKTPSL-YNVMMKAYGACDRFTDAVTVFEAMEKDGA 469

Query: 232 GNNWSTLDVLIILYGYLAKGKDLE---RIWATVQEL---PNVRSKSYVLAIEAFGRIAQV 285
             N ++ + LI L   L KG+ LE   R+   V+     P++ S S V++   +G + +V
Sbjct: 470 SPNEASFNSLIQL---LCKGRLLEILQRVLVLVKAAGFKPSLASCSSVVSF--YGDMGRV 524

Query: 286 SRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHL 345
             AE ++ EM +         Y+++++ Y + GF  +A   L  +   G  P+ I Y  +
Sbjct: 525 REAERVFKEMLASGVEADVICYSALLNAYAEAGFAREAQQTLDSLKAAGFVPDTIVYTSM 584

Query: 346 ALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFE 405
                   L+ E  K  E         ++   +P +    +++ ++ + G    AE LF 
Sbjct: 585 MKLYSNLGLIAEAEKIYE---------EISRLSPDVFAANTMLNLYIKSGMFTEAEQLFR 635

Query: 406 ELKKANYTKYTFVYNTLIKAYVKA 429
            +++            ++K Y +A
Sbjct: 636 AMQRGKPGLNEVACTMMLKLYREA 659



 Score = 44.3 bits (103), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 50/255 (19%), Positives = 98/255 (38%), Gaps = 47/255 (18%)

Query: 107 DKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVS 166
           D G ++ +    K+M   G     + ++ L+   +  G  +     L  +KA    P   
Sbjct: 520 DMGRVREAERVFKEMLASGVEADVICYSALLNAYAEAGFAREAQQTLDSLKAAGFVPDTI 579

Query: 167 TFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEAL 226
            +  +MK+ +N   I    K+Y ++ R  + P+  +   +   +  + ++T AE    A+
Sbjct: 580 VYTSMMKLYSNLGLIAEAEKIYEEISR--LSPDVFAANTMLNLYIKSGMFTEAEQLFRAM 637

Query: 227 EKSMTGNNWSTLDVLIILY---GYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIA 283
           ++   G N     +++ LY   G + +G D+ R+ +    + + R+              
Sbjct: 638 QRGKPGLNEVACTMMLKLYREAGKIEQGLDVARVMSRRFLITDARA-------------- 683

Query: 284 QVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYR 343
                                  +N VI++Y K G + +A   LKEM   G  P+  T+ 
Sbjct: 684 -----------------------FNVVIAMYVKAGLMREALEALKEMRRAGLVPSRSTF- 719

Query: 344 HLALGCFKSNLVEEG 358
                CF+  L   G
Sbjct: 720 ----SCFEEILERAG 730



 Score = 44.3 bits (103), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 38/161 (23%), Positives = 65/161 (40%), Gaps = 6/161 (3%)

Query: 272 YVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMS 331
           Y + +   GR A+    ++ W EM   +       Y+ ++ V+ + G  D+A    + M 
Sbjct: 120 YNILLRTLGRAAKWELLQKYWSEMLGERVPPTIFTYSILVDVHGRAGMKDEAIRFYRHMI 179

Query: 332 MNGCKPNAI---TYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSII 388
            +G +P+ +   TY +L          E+ F  L     L+     R   P  ET  ++I
Sbjct: 180 ESGVEPDEVMVSTYMNLQRRFGDLEEAEKAFWGL-FSENLVDGTTKRPENP--ETYNTMI 236

Query: 389 EIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKA 429
             + E         +F E+ KA     T  +N +I  Y KA
Sbjct: 237 SFYGEHAKFAEGSKVFAEMMKAGVELTTVTFNAMIHVYGKA 277


>gi|168014206|ref|XP_001759643.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162689182|gb|EDQ75555.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 1043

 Score = 78.2 bits (191), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 109/456 (23%), Positives = 182/456 (39%), Gaps = 60/456 (13%)

Query: 12   SAFQSWMREGFPVHRGEIFHSINRLRKLQLNKRALEVMEWVIRERPYRPKELDYSYLLEF 71
            S F   +R+G           IN L K     +AL+V    ++E    P   +Y  LL  
Sbjct: 619  SLFDEMVRKGCVADVSTYSLVINCLCKSDDVDQALDVFGR-MKEEGMEPLLGNYKTLLSS 677

Query: 72   TIKNHGISQGEKLF------CCIPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLG 125
             +K+  I    ++F        +P  +   ++ N LV +       KL ++ MK   +L 
Sbjct: 678  LVKDEKIDFALQIFNELQESSLVPDTFVYNIMVNGLVKSNRVDEACKL-VDSMKNQNILP 736

Query: 126  HSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLM 185
               +Y     L+      GR +   N+  +M  +   P V  +  LM +      +   +
Sbjct: 737  DLFTY---TSLLDGLGKSGRLEEAFNMFTKMTEEGHEPDVVAYTSLMDVLGKGGKLSHAL 793

Query: 186  KVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILY 245
             ++  M +    P+ V+Y  L    ++ +   V E Y    E S                
Sbjct: 794  IIFRAMAKKRCVPDVVTYSSLI--DSLGKEGRVEEAYY-FFENS---------------- 834

Query: 246  GYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATE 305
              ++KG             PNV    Y   I++FG+   V RA EL+ EMQ  +      
Sbjct: 835  --ISKGC-----------TPNV--GVYSSLIDSFGKKGMVDRALELFEEMQRRQCPPNIV 879

Query: 306  QYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEG---FKAL 362
             YN+++S   K G ++ A  LL+EM   GC P+ +TY  L  G  K  +V+E    FK +
Sbjct: 880  TYNNLLSGLAKAGRLNVAEKLLEEMEKVGCVPDLVTYNILIDGVGKMGMVDEAESYFKRM 939

Query: 363  ELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTL 422
                      K +   P + T  S+IE   +   +  A  LF+ +++  Y      YN L
Sbjct: 940  ----------KEKGIVPDVITFTSLIESLGKVDKLLEACELFDSMEEEGYNPSVVTYNVL 989

Query: 423  IKAYVKA-KINDPNLL-RRMILGGARPDAETYSLLK 456
            I    +A K+++  ++   M + G  PD  T  ++K
Sbjct: 990  IDILGRAGKVHEAAMIFHEMKVKGCMPDGITIGIMK 1025



 Score = 75.9 bits (185), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 117/469 (24%), Positives = 181/469 (38%), Gaps = 57/469 (12%)

Query: 13  AFQSW--MREGFPVHRGEIFHSINRLRKLQLNKRALEVMEWVIRERPYRPKELDYSYLLE 70
            F +W   ++G+    G     I RL   Q     ++++  + +E       L  S L  
Sbjct: 167 CFFTWAGQQDGYSHTVGTYTLMIKRLAGAQETDAVVQILTAMWKEGHRISMHLLTSLLRT 226

Query: 71  FTIKNH-----GISQGEKLFCCIPK----DYQNELL-----YNNLVIACLDKGVIKLSLE 116
           F   N+      I    K F C P     ++  ELL     Y++ VI     G  ++  +
Sbjct: 227 FGSTNNVSGALEIFNQMKSFGCNPSTNMYNFVLELLVKGGFYHSAVIVFGKLGQFRIQPD 286

Query: 117 YMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEA 176
             +  R+  HS     FNR        GR       +++M    + P V TF +L+    
Sbjct: 287 -AQTFRIFVHS-----FNR-------SGRLDPAAEPIQEMIKSGIDPGVHTFTVLIDALV 333

Query: 177 NDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVA-RLYTVAETYVEALEKSMTGNNW 235
              NI+   K ++ MK     PN V+Y  L    A A RL    E +VE     M  NN 
Sbjct: 334 KSGNIDEACKFFNGMKNLRCSPNVVTYTTLVNGLAKAGRLEEACEVFVE-----MKENNC 388

Query: 236 STLDVLI-ILYGYLAKGKDLERIWATVQEL------PNVRSKSYVLAIEAFGRIAQVSRA 288
           S   +    L   L K  + +      +E+      PN+R+  Y + I   G+  +   A
Sbjct: 389 SPDAIAYNTLIDGLGKAGEADMACGLFKEMKDRGLVPNLRT--YNIMISVLGKAGRQPEA 446

Query: 289 EELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALG 348
            +L+ +++    +     YN++I V  K G +DK   ++KEM   G +   I  R     
Sbjct: 447 WQLFHDLKEQGAVPDVFTYNTLIDVLGKGGQMDKVLAIIKEMVEKGGE--CIISR----- 499

Query: 349 CFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELK 408
              SN   EG   +E   + +    +   +    T  +++  F   G V  A  L E +K
Sbjct: 500 --DSNAGHEG--TIEGADRTVEYPSLGFKSLGEITYNTLMSAFIHNGHVDEAVKLLEVMK 555

Query: 409 KANYTKYTFVYNTLIKAYVKAKINDP--NLLRRMILGGARPDAETYSLL 455
           K         Y TL+    KA   D   +LLR M   G  P   TYS L
Sbjct: 556 KHECIPTVVTYTTLVDGLGKAGRLDEAVSLLREMEKQGCEPSVVTYSSL 604



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 54/211 (25%), Positives = 103/211 (48%), Gaps = 12/211 (5%)

Query: 162  APHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAET 221
             P+V  +  L+        ++  ++++ +M+R +  PN V+Y  L +  A A    VAE 
Sbjct: 840  TPNVGVYSSLIDSFGKKGMVDRALELFEEMQRRQCPPNIVTYNNLLSGLAKAGRLNVAEK 899

Query: 222  YVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQE---LPNVRSKSYVLAIEA 278
             +E +EK     +  T ++LI   G +    + E  +  ++E   +P+V   ++   IE+
Sbjct: 900  LLEEMEKVGCVPDLVTYNILIDGVGKMGMVDEAESYFKRMKEKGIVPDV--ITFTSLIES 957

Query: 279  FGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPN 338
             G++ ++  A EL+  M+      +   YN +I +  + G + +A+ +  EM + GC P+
Sbjct: 958  LGKVDKLLEACELFDSMEEEGYNPSVVTYNVLIDILGRAGKVHEAAMIFHEMKVKGCMPD 1017

Query: 339  AITYRHLALGCFKSNLV--EEGFKALELGMK 367
             IT     +G  K  L   E+ F ALE G++
Sbjct: 1018 GIT-----IGIMKRILSVREQQFHALEEGLR 1043



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 88/414 (21%), Positives = 167/414 (40%), Gaps = 44/414 (10%)

Query: 31  HSINRLRKLQLNKRALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQGEKLFC---- 86
           HS NR  +L     A E ++ +I+     P    ++ L++  +K+  I +  K F     
Sbjct: 295 HSFNRSGRLD---PAAEPIQEMIKS-GIDPGVHTFTVLIDALVKSGNIDEACKFFNGMKN 350

Query: 87  --CIPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPG 144
             C P    N + Y  LV      G ++ + E   +M+    S   + +N LI      G
Sbjct: 351 LRCSP----NVVTYTTLVNGLAKAGRLEEACEVFVEMKENNCSPDAIAYNTLIDGLGKAG 406

Query: 145 RRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYC 204
                  + ++MK   + P++ T++I++ +           +++ D+K     P+  +Y 
Sbjct: 407 EADMACGLFKEMKDRGLVPNLRTYNIMISVLGKAGRQPEAWQLFHDLKEQGAVPDVFTYN 466

Query: 205 ----ILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWAT 260
               +L     + ++  + +  VE   + +   + +         G+    +  +R   T
Sbjct: 467 TLIDVLGKGGQMDKVLAIIKEMVEKGGECIISRDSNA--------GHEGTIEGADR---T 515

Query: 261 VQELPNVRSKS-----YVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYC 315
           V E P++  KS     Y   + AF     V  A +L   M+  + +     Y +++    
Sbjct: 516 V-EYPSLGFKSLGEITYNTLMSAFIHNGHVDEAVKLLEVMKKHECIPTVVTYTTLVDGLG 574

Query: 316 KNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVR 375
           K G +D+A  LL+EM   GC+P+ +TY  L    +K +  EE     +        + VR
Sbjct: 575 KAGRLDEAVSLLREMEKQGCEPSVVTYSSLMASFYKRDQEEESLSLFD--------EMVR 626

Query: 376 SSTPWLETTLS-IIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVK 428
                  +T S +I    +  DV  A ++F  +K+         Y TL+ + VK
Sbjct: 627 KGCVADVSTYSLVINCLCKSDDVDQALDVFGRMKEEGMEPLLGNYKTLLSSLVK 680


>gi|32527606|gb|AAP86200.1| pentatricopeptide repeat-containing protein [Raphanus sativus]
          Length = 654

 Score = 78.2 bits (191), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 101/463 (21%), Positives = 182/463 (39%), Gaps = 69/463 (14%)

Query: 30  FHSINRLRKLQLNKRALEVMEWVIRERPYRPKELDYSYL---------LEFTIKNHGISQ 80
           FH I  L        A+++   ++R RP  P  +D+  L         L+  I  H   +
Sbjct: 53  FHEIKGLED------AIDLFGDMVRSRPL-PSVIDFCKLMGVVVRMGRLDVVISLHRKME 105

Query: 81  GEKLFCCIPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILN 140
             ++ C       N   +  L+        +  +L    K+  LG   + + F+ L+   
Sbjct: 106 MRRVPC-------NAYSFTILMKCFCSCSKLPFALSTFGKITKLGFHPTVVTFSTLLHGL 158

Query: 141 SSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNE 200
               R     ++  QM      P+V TF  LM     +  +   + +   M    ++PN+
Sbjct: 159 CVEDRISEALDLFHQM----CKPNVVTFTTLMNGLCREGRVVEAVALLDRMLEDGLQPNQ 214

Query: 201 VSYCILATAHAVARLYTVAETYVEALEK-SMTGNN---WSTLDVLIILYGYLAKGKDLER 256
           ++Y  +            A   +  +E+ S    N   W       ++ G+ + G+    
Sbjct: 215 ITYGTIVDGMCKMGDTVSALNLLRKMEEVSHIKPNVVIWPLERRTCMINGFCSSGR---- 270

Query: 257 IWATVQEL-----------PNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATE 305
            W+  Q+L           P+V   +Y   I AF +  +   AEEL+ EM     + +T 
Sbjct: 271 -WSEAQQLLQEMLERKKISPDV--VTYNALINAFVKEGKFFEAEELYDEMLPRGIIPSTI 327

Query: 306 QYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELG 365
            Y+S+I  +CK   +D A  +   M+  GC P+ IT+  L  G  ++  V++G K L   
Sbjct: 328 TYSSMIDGFCKQNRLDAAEHMFYLMATKGCSPDIITFNTLIAGYCRAKRVDDGIKLLH-- 385

Query: 366 MKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKA 425
            ++     V ++  +  TTL  I  F + GD+  A++L +E+  +         NTL+  
Sbjct: 386 -EMTEAGLVANTITY--TTL--IHGFCQVGDLNAAQDLLQEMVSSGVCPNVVTCNTLLDG 440

Query: 426 YVK-AKINDP-NLLRRM-----------ILGGARPDAETYSLL 455
                K+ D   + + M              G  PD +TY++L
Sbjct: 441 LCDNGKLKDALEMFKAMQKSKMDIDASHPFNGVEPDVQTYNIL 483



 Score = 65.5 bits (158), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 73/350 (20%), Positives = 142/350 (40%), Gaps = 26/350 (7%)

Query: 98  YNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMK 157
           YN L+ A + +G    + E   +M   G   S + ++ +I       R     ++   M 
Sbjct: 294 YNALINAFVKEGKFFEAEELYDEMLPRGIIPSTITYSSMIDGFCKQNRLDAAEHMFYLMA 353

Query: 158 ADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYT 217
               +P + TF+ L+        ++  +K+  +M  + +  N ++Y  L           
Sbjct: 354 TKGCSPDIITFNTLIAGYCRAKRVDDGIKLLHEMTEAGLVANTITYTTLIHGFCQVGDLN 413

Query: 218 VAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQEL------------- 264
            A+  ++ +  S    N  T + L+       K KD   ++  +Q+              
Sbjct: 414 AAQDLLQEMVSSGVCPNVVTCNTLLDGLCDNGKLKDALEMFKAMQKSKMDIDASHPFNGV 473

Query: 265 -PNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKA 323
            P+V  ++Y + I       +   AEEL+ EM     +  T  YNSVI   CK   +D+A
Sbjct: 474 EPDV--QTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTITYNSVIHGLCKQSRLDEA 531

Query: 324 SGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKAL-ELGMKLITTKKVRSSTPWLE 382
           + +   M      PN +T+  L  G  K+  V++G +   E+G + I    +        
Sbjct: 532 TQMFDSMGSKSFSPNVVTFTTLINGYCKAGRVDDGLELFCEMGRRGIVANAI-------- 583

Query: 383 TTLSIIEIFAEKGDVGNAENLFEELKKAN-YTKYTFVYNTLIKAYVKAKI 431
           T +++I  F + G++  A ++F+E+  +  Y     + N L   + K ++
Sbjct: 584 TYITLIHGFRKVGNINGALDIFQEMMASGVYPDTITIRNMLTGLWSKEEL 633



 Score = 63.2 bits (152), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 78/362 (21%), Positives = 141/362 (38%), Gaps = 26/362 (7%)

Query: 94  NELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVF----NRLIILNS--SPGRRK 147
           N++ Y  +V      G    +L  ++KM  + H    +V      R  ++N   S GR  
Sbjct: 213 NQITYGTIVDGMCKMGDTVSALNLLRKMEEVSHIKPNVVIWPLERRTCMINGFCSSGRWS 272

Query: 148 TIPNILRQM-KADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCIL 206
               +L++M +  K++P V T++ L+     +       ++Y +M    + P+ ++Y  +
Sbjct: 273 EAQQLLQEMLERKKISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPSTITYSSM 332

Query: 207 ATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPN 266
                       AE     +       +  T + LI  Y    +  D  ++   + E   
Sbjct: 333 IDGFCKQNRLDAAEHMFYLMATKGCSPDIITFNTLIAGYCRAKRVDDGIKLLHEMTEAGL 392

Query: 267 VRSK-SYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASG 325
           V +  +Y   I  F ++  ++ A++L  EM S          N+++   C NG +  A  
Sbjct: 393 VANTITYTTLIHGFCQVGDLNAAQDLLQEMVSSGVCPNVVTCNTLLDGLCDNGKLKDALE 452

Query: 326 LLKEMS-----------MNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKV 374
           + K M             NG +P+  TY  L      S L+ EG K LE   +L      
Sbjct: 453 MFKAMQKSKMDIDASHPFNGVEPDVQTYNILI-----SGLINEG-KFLE-AEELYEEMPH 505

Query: 375 RSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKINDP 434
           R   P   T  S+I    ++  +  A  +F+ +   +++     + TLI  Y KA   D 
Sbjct: 506 RGIVPDTITYNSVIHGLCKQSRLDEATQMFDSMGSKSFSPNVVTFTTLINGYCKAGRVDD 565

Query: 435 NL 436
            L
Sbjct: 566 GL 567


>gi|359481811|ref|XP_002278330.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g41720-like [Vitis vinifera]
          Length = 848

 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 89/340 (26%), Positives = 151/340 (44%), Gaps = 29/340 (8%)

Query: 100 NLVIACLDK----GVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQ 155
           N+VI CL K    G        MK+ R   +    + F  +I L S  G+ +        
Sbjct: 306 NIVIYCLVKLGQNGKAIDIFNSMKEKRSECYP-DVVTFTTIIHLYSVCGQIENCQTAFNT 364

Query: 156 MKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARL 215
           M A+ + P++ +++ L+   A+    +    V++++K++   P+ VSY  L  A+  +  
Sbjct: 365 MLAEGLKPNIVSYNALIGAYASHGMDKEAFSVFNEIKKNGFHPDVVSYTSLLNAYGKSGK 424

Query: 216 YTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQEL------PNVRS 269
              A    E + ++    N  + + LI  YG  +KG   E +   + E+      PN+ S
Sbjct: 425 PEKAMKVFELMRRNHCKPNLVSYNALIDAYG--SKGLLTEAV-EILHEMERNGVQPNIVS 481

Query: 270 KSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLK-ATEQYNSVISVYCKNGFIDKASGLLK 328
              +LA  A GR  Q  + + + L    ++ +K  T  YNS I  Y   G  DKA  L +
Sbjct: 482 ICTLLA--ACGRCGQKVKIKSV-LSAAELRGIKLNTTAYNSAIGSYLSVGEYDKALSLYR 538

Query: 329 EMSMNGCKPNAITYRHLALGCFKSNLVEE--GFKALELGMKLITTKKVRSSTPWLETTLS 386
            M     KP+ +TY  L  GC K +   E  GF    + +K+  +K+V S         S
Sbjct: 539 AMRTKKVKPDPVTYNVLISGCCKMSKYGEALGFLDEMMDLKIPLSKEVYS---------S 589

Query: 387 IIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAY 426
           +I  ++++G V  AE++F ++K          Y  +I AY
Sbjct: 590 VICAYSKQGQVTEAESMFTKMKMVGCRPDVITYTAMIHAY 629



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 90/409 (22%), Positives = 166/409 (40%), Gaps = 49/409 (11%)

Query: 98  YNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMK 157
           YNNL+ AC   G  K +L   KKM   G     +  N ++       +   + +    MK
Sbjct: 235 YNNLINACGSSGNWKEALNVCKKMTENGVGPDLVTHNIVLSAYKRGNQYSKVLSYFELMK 294

Query: 158 ADKVAPHVSTFHI----LMKIEANDHNIEGLMKVYSDM--KRSEVEPNEVSYCILATAHA 211
              + P  +T +I    L+K+  N   I+    +++ M  KRSE  P+ V++  +   ++
Sbjct: 295 GTNIRPDTTTLNIVIYCLVKLGQNGKAID----IFNSMKEKRSECYPDVVTFTTIIHLYS 350

Query: 212 VARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQE---LPNVR 268
           V       +T    +       N  + + LI  Y      K+   ++  +++    P+V 
Sbjct: 351 VCGQIENCQTAFNTMLAEGLKPNIVSYNALIGAYASHGMDKEAFSVFNEIKKNGFHPDVV 410

Query: 269 SKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLK 328
             SY   + A+G+  +  +A +++  M+          YN++I  Y   G + +A  +L 
Sbjct: 411 --SYTSLLNAYGKSGKPEKAMKVFELMRRNHCKPNLVSYNALIDAYGSKGLLTEAVEILH 468

Query: 329 EMSMNGCKPNAITYRHLALGCFKSNL---VEEGFKALEL-GMKLITTK------------ 372
           EM  NG +PN ++   L   C +      ++    A EL G+KL TT             
Sbjct: 469 EMERNGVQPNIVSICTLLAACGRCGQKVKIKSVLSAAELRGIKLNTTAYNSAIGSYLSVG 528

Query: 373 ------------KVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYN 420
                       + +   P   T   +I    +    G A    +E+          VY+
Sbjct: 529 EYDKALSLYRAMRTKKVKPDPVTYNVLISGCCKMSKYGEALGFLDEMMDLKIPLSKEVYS 588

Query: 421 TLIKAYVK-AKINDP-NLLRRMILGGARPDAETYSLL----KLAEQFQK 463
           ++I AY K  ++ +  ++  +M + G RPD  TY+ +     +AE ++K
Sbjct: 589 SVICAYSKQGQVTEAESMFTKMKMVGCRPDVITYTAMIHAYDVAENWEK 637



 Score = 62.0 bits (149), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 58/283 (20%), Positives = 121/283 (42%), Gaps = 14/283 (4%)

Query: 132 VFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDM 191
            +N LI  +   G+ +   NI+  M    + P  ST++ L+    +  N +  + V   M
Sbjct: 199 TYNALINAHGRAGQWRWAMNIMDDMLRAAIPPSRSTYNNLINACGSSGNWKEALNVCKKM 258

Query: 192 KRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKG 251
             + V P+ V++ I+ +A+     Y+   +Y E ++ +    + +TL+++I     L + 
Sbjct: 259 TENGVGPDLVTHNIVLSAYKRGNQYSKVLSYFELMKGTNIRPDTTTLNIVIYCLVKLGQN 318

Query: 252 KDLERIWATVQE-----LPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQ 306
                I+ +++E      P+V   ++   I  +    Q+   +  +  M +         
Sbjct: 319 GKAIDIFNSMKEKRSECYPDVV--TFTTIIHLYSVCGQIENCQTAFNTMLAEGLKPNIVS 376

Query: 307 YNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGM 366
           YN++I  Y  +G   +A  +  E+  NG  P+ ++Y  L     KS   E+  K  EL  
Sbjct: 377 YNALIGAYASHGMDKEAFSVFNEIKKNGFHPDVVSYTSLLNAYGKSGKPEKAMKVFEL-- 434

Query: 367 KLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKK 409
                 +     P L +  ++I+ +  KG +  A  +  E+++
Sbjct: 435 -----MRRNHCKPNLVSYNALIDAYGSKGLLTEAVEILHEMER 472



 Score = 40.4 bits (93), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 49/217 (22%), Positives = 94/217 (43%), Gaps = 24/217 (11%)

Query: 258 WATVQELPN-----VRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKA-TEQYNSVI 311
           W  V+ L N        K++ L I    +I  +  + +++  M++ K   A  + YN +I
Sbjct: 110 WDDVEGLLNRWVGRFSRKNFPLLIREITQIGSLEHSVQVFRWMKNQKNYCARNDIYNMMI 169

Query: 312 SVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKL-IT 370
            ++ ++  +D+A GL  EM    CKP+A TY         + L+    +A +    + I 
Sbjct: 170 RLHARHNIVDQARGLFFEMQKWRCKPDAETY---------NALINAHGRAGQWRWAMNIM 220

Query: 371 TKKVRSSTPWLETTL-SIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKA 429
              +R++ P   +T  ++I      G+   A N+ +++ +         +N ++ AY + 
Sbjct: 221 DDMLRAAIPPSRSTYNNLINACGSSGNWKEALNVCKKMTENGVGPDLVTHNIVLSAYKRG 280

Query: 430 KINDPNLLRRMILGGA--RPDAET-----YSLLKLAE 459
                 L    ++ G   RPD  T     Y L+KL +
Sbjct: 281 NQYSKVLSYFELMKGTNIRPDTTTLNIVIYCLVKLGQ 317



 Score = 38.5 bits (88), Expect = 7.0,   Method: Compositional matrix adjust.
 Identities = 55/230 (23%), Positives = 91/230 (39%), Gaps = 32/230 (13%)

Query: 258 WATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKN 317
           W   Q+    R+  Y + I    R   V +A  L+ EMQ  +     E YN++I+ + + 
Sbjct: 151 WMKNQKNYCARNDIYNMMIRLHARHNIVDQARGLFFEMQKWRCKPDAETYNALINAHGRA 210

Query: 318 GFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALE------LGMKLITT 371
           G    A  ++ +M      P+  TY +L   C  S   +E     +      +G  L+T 
Sbjct: 211 GQWRWAMNIMDDMLRAAIPPSRSTYNNLINACGSSGNWKEALNVCKKMTENGVGPDLVTH 270

Query: 372 KKVRSS----------TPWLE-----------TTLSI-IEIFAEKGDVGNAENLFEELKK 409
             V S+            + E           TTL+I I    + G  G A ++F  +K+
Sbjct: 271 NIVLSAYKRGNQYSKVLSYFELMKGTNIRPDTTTLNIVIYCLVKLGQNGKAIDIFNSMKE 330

Query: 410 ANYTKYTFV--YNTLIKAY-VKAKI-NDPNLLRRMILGGARPDAETYSLL 455
                Y  V  + T+I  Y V  +I N       M+  G +P+  +Y+ L
Sbjct: 331 KRSECYPDVVTFTTIIHLYSVCGQIENCQTAFNTMLAEGLKPNIVSYNAL 380


>gi|255561697|ref|XP_002521858.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223538896|gb|EEF40494.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 533

 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 88/382 (23%), Positives = 158/382 (41%), Gaps = 69/382 (18%)

Query: 87  CIPKDYQNELLYNNLVIACLDKGVIKL-----SLEYMKKMRVLGHSISYLVFNRLIILNS 141
           C+P    N + YN ++      G  KL     +  +++ M + G   + + FN +I    
Sbjct: 14  CLP----NVVTYNTMI-----DGYCKLKRTDEAFGFLRSMGLKGLEPNLITFNMIINGLC 64

Query: 142 SPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEV 201
             GR K    +L +M      P   T++ L+     + N    + ++++M R+ + PN V
Sbjct: 65  RDGRLKETSEVLVEMSRKGYVPDEVTYNTLVNGYCKEGNFHQALVLHAEMVRNGLSPNVV 124

Query: 202 SYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATV 261
           +Y  L  +                                      + K  +L R     
Sbjct: 125 TYTSLINS--------------------------------------MCKAGNLNRAMEFF 146

Query: 262 QEL------PNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYC 315
            ++      PN R  +Y   I  F +   +  A  +  EM     + +   YN++I+ +C
Sbjct: 147 DQMHVRGLCPNER--TYTTIINGFAQQGLLDEAYRVLNEMTRSGFIPSIVTYNALINGHC 204

Query: 316 KNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVR 375
             G +++A GLL++M   G  P+ ++Y  +  G F  N  +E  +A ++ +++I     +
Sbjct: 205 VLGRMEEAIGLLQDMVGKGVLPDVVSYSTIISG-FARN--QELDRAFQMKVEMIG----K 257

Query: 376 SSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVK-AKINDP 434
           S  P   T  S+I+   E+  +  A ++F+E+         F Y TLI AY K   +N  
Sbjct: 258 SVLPDAVTYSSLIQGLCEQRRLTEACDMFQEMLTIKLPPDEFTYTTLINAYCKEGDLNKA 317

Query: 435 -NLLRRMILGGARPDAETYSLL 455
            +L   MI  G  PDA TY++L
Sbjct: 318 LHLHDEMIQKGFLPDAVTYNVL 339



 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 80/355 (22%), Positives = 155/355 (43%), Gaps = 31/355 (8%)

Query: 94  NELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNIL 153
           +E+ YN LV     +G    +L    +M   G S + + +  LI      G         
Sbjct: 87  DEVTYNTLVNGYCKEGNFHQALVLHAEMVRNGLSPNVVTYTSLINSMCKAGNLNRAMEFF 146

Query: 154 RQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAV- 212
            QM    + P+  T+  ++   A    ++   +V ++M RS   P+ V+Y  L   H V 
Sbjct: 147 DQMHVRGLCPNERTYTTIINGFAQQGLLDEAYRVLNEMTRSGFIPSIVTYNALINGHCVL 206

Query: 213 ARLYTVAETYVEALEKSMTGN--NWSTLDVLIILYGYLAKGKDLERIWATVQE------L 264
            R+        + + K +  +  ++ST     I+ G+ A+ ++L+R +    E      L
Sbjct: 207 GRMEEAIGLLQDMVGKGVLPDVVSYST-----IISGF-ARNQELDRAFQMKVEMIGKSVL 260

Query: 265 PNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKAS 324
           P+  + +Y   I+      +++ A +++ EM ++K       Y ++I+ YCK G ++KA 
Sbjct: 261 PD--AVTYSSLIQGLCEQRRLTEACDMFQEMLTIKLPPDEFTYTTLINAYCKEGDLNKAL 318

Query: 325 GLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPW---- 380
            L  EM   G  P+A+TY  L  G  K    +E  + L   +KL     + S+  +    
Sbjct: 319 HLHDEMIQKGFLPDAVTYNVLINGLNKQARSKEARRLL---LKLFYDDSIPSAVTYNTLI 375

Query: 381 -------LETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVK 428
                   ++ +++++ F  KG +  A+ +FE +   N+     +YN +I  + +
Sbjct: 376 ENCCNIEFKSAVALVKGFCMKGLMDEADQVFESMINKNHKPNEAIYNVIIHGHCR 430



 Score = 46.6 bits (109), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 38/133 (28%), Positives = 53/133 (39%), Gaps = 11/133 (8%)

Query: 326 LLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKAL-ELGMKLITTKKVRSSTPWLETT 384
             KEM  NGC PN +TY  +  G  K    +E F  L  +G+K +         P L T 
Sbjct: 5   FFKEMERNGCLPNVVTYNTMIDGYCKLKRTDEAFGFLRSMGLKGL--------EPNLITF 56

Query: 385 LSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKINDPNLL--RRMIL 442
             II      G +     +  E+ +  Y      YNTL+  Y K       L+    M+ 
Sbjct: 57  NMIINGLCRDGRLKETSEVLVEMSRKGYVPDEVTYNTLVNGYCKEGNFHQALVLHAEMVR 116

Query: 443 GGARPDAETYSLL 455
            G  P+  TY+ L
Sbjct: 117 NGLSPNVVTYTSL 129



 Score = 46.6 bits (109), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 42/168 (25%), Positives = 73/168 (43%), Gaps = 11/168 (6%)

Query: 291 LWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALG-C 349
            + EM+    L     YN++I  YCK    D+A G L+ M + G +PN IT+  +  G C
Sbjct: 5   FFKEMERNGCLPNVVTYNTMIDGYCKLKRTDEAFGFLRSMGLKGLEPNLITFNMIINGLC 64

Query: 350 FKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKK 409
               L E     +E+  K     +V  +T        ++  + ++G+   A  L  E+ +
Sbjct: 65  RDGRLKETSEVLVEMSRKGYVPDEVTYNT--------LVNGYCKEGNFHQALVLHAEMVR 116

Query: 410 ANYTKYTFVYNTLIKAYVKA-KINDP-NLLRRMILGGARPDAETYSLL 455
              +     Y +LI +  KA  +N       +M + G  P+  TY+ +
Sbjct: 117 NGLSPNVVTYTSLINSMCKAGNLNRAMEFFDQMHVRGLCPNERTYTTI 164


>gi|449507709|ref|XP_004163108.1| PREDICTED: pentatricopeptide repeat-containing protein At5g61990,
           mitochondrial-like [Cucumis sativus]
          Length = 999

 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 104/440 (23%), Positives = 171/440 (38%), Gaps = 69/440 (15%)

Query: 53  IRERPYRPKELDYSYLLEFTIKNHGISQGEKLFCCIPKD--YQNELLYNNLVIACLDKGV 110
           ++ R   P    YS L+     +  + +  ++   + ++    N  +Y  L+ A + +  
Sbjct: 442 MKARKLTPSPFTYSVLISGLCHSSDLQKANEVLDQMIRNGVKPNVFMYGTLIKAYVQESR 501

Query: 111 IKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHI 170
            ++++E +K M   G       +N LII      + +    +L  M    + P+  T+  
Sbjct: 502 YEMAIELLKIMIANGVLPDLFCYNCLIIGLCRAKKVEEAKMLLVDMGEKGIKPNAHTYGA 561

Query: 171 LMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSM 230
            + + +    I+   + + DM  S + PN V Y IL   H       V  T VEAL    
Sbjct: 562 FINLYSKSGEIQVAERYFKDMLSSGIVPNNVIYTILIKGHC-----DVGNT-VEAL---- 611

Query: 231 TGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEE 290
                ST   +      L KG            +P++R+ S +  I +  +  +   A  
Sbjct: 612 -----STFKCM------LEKGL-----------IPDIRAYSAI--IHSLSKNGKTKEAMG 647

Query: 291 LWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHL--ALG 348
           ++L+      +     YNS+IS +CK G I+KAS L  EM  NG  PN + Y  L    G
Sbjct: 648 VFLKFLKTGVVPDVFLYNSLISGFCKEGDIEKASQLYDEMLHNGINPNIVVYNTLINDYG 707

Query: 349 CFKSNLVEEGFKA----------------------------LELGMKLITTKKVRSSTPW 380
             KS  + E FK                             LE  + L    + + S   
Sbjct: 708 YCKSGNLTEAFKLFDEMISKGISPDGYIYCILIDGCGKEGNLEKALSLFHEAQ-QKSVGS 766

Query: 381 LETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKIND--PNLLR 438
           L    S+I+ F + G V  A  LF+++     T     Y  LI AY KA++ +    L  
Sbjct: 767 LSAFNSLIDSFCKHGKVIEARELFDDMVDKKLTPNIVTYTILIDAYGKAEMMEEAEQLFL 826

Query: 439 RMILGGARPDAETYSLLKLA 458
            M      P+  TY+ L L+
Sbjct: 827 DMETRNIIPNTLTYTSLLLS 846



 Score = 60.1 bits (144), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 81/367 (22%), Positives = 145/367 (39%), Gaps = 18/367 (4%)

Query: 94  NELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNIL 153
           N   YN  +      G +  +LE  K M   G       +  L+       R K    I 
Sbjct: 275 NLFTYNAFIGGLCQTGAVDEALEVKKLMMEKGLGPDGHTYTLLVDGFCKQKRSKEAKLIF 334

Query: 154 RQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVA 213
             M +  + P+  T+  L+     + NIE  +++  +M    ++ N V+Y   A    +A
Sbjct: 335 ESMPSSGLNPNRFTYTALIDGFIKEGNIEEALRIKDEMITRGLKLNVVTYN--AMIGGIA 392

Query: 214 RLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSK--- 270
           +   +A+      E  M G    T    +++ GYL K  D+ +    + E+   +     
Sbjct: 393 KAGEMAKAMSLFNEMLMAGIEPDTWTYNLLIDGYL-KSHDMAKACELLAEMKARKLTPSP 451

Query: 271 -SYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKE 329
            +Y + I      + + +A E+  +M           Y ++I  Y +    + A  LLK 
Sbjct: 452 FTYSVLISGLCHSSDLQKANEVLDQMIRNGVKPNVFMYGTLIKAYVQESRYEMAIELLKI 511

Query: 330 MSMNGCKPNAITYRHLALGCFKSNLVEEGFKAL-ELGMKLITTKKVRSSTPWLETTLSII 388
           M  NG  P+   Y  L +G  ++  VEE    L ++G K I         P   T  + I
Sbjct: 512 MIANGVLPDLFCYNCLIIGLCRAKKVEEAKMLLVDMGEKGI--------KPNAHTYGAFI 563

Query: 389 EIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAY--VKAKINDPNLLRRMILGGAR 446
            ++++ G++  AE  F+++  +       +Y  LIK +  V   +   +  + M+  G  
Sbjct: 564 NLYSKSGEIQVAERYFKDMLSSGIVPNNVIYTILIKGHCDVGNTVEALSTFKCMLEKGLI 623

Query: 447 PDAETYS 453
           PD   YS
Sbjct: 624 PDIRAYS 630



 Score = 56.2 bits (134), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 70/313 (22%), Positives = 134/313 (42%), Gaps = 25/313 (7%)

Query: 131 LVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDH------NIEGL 184
            ++N LI      G  +    +  +M  + + P++  ++ L+    ND+      N+   
Sbjct: 662 FLYNSLISGFCKEGDIEKASQLYDEMLHNGINPNIVVYNTLI----NDYGYCKSGNLTEA 717

Query: 185 MKVYSDMKRSEVEPNEVSYCILATAHAV-ARLYTVAETYVEALEKSMTGNNWSTLDVLI- 242
            K++ +M    + P+   YCIL         L      + EA +KS+   + S  + LI 
Sbjct: 718 FKLFDEMISKGISPDGYIYCILIDGCGKEGNLEKALSLFHEAQQKSV--GSLSAFNSLID 775

Query: 243 --ILYGYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQ 300
               +G + + ++L       +  PN+ +  Y + I+A+G+   +  AE+L+L+M++   
Sbjct: 776 SFCKHGKVIEARELFDDMVDKKLTPNIVT--YTILIDAYGKAEMMEEAEQLFLDMETRNI 833

Query: 301 LKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFK 360
           +  T  Y S++  Y + G   K   L K+M   G   +AI Y     G   S   +EG K
Sbjct: 834 IPNTLTYTSLLLSYNQIGNRFKMISLFKDMEARGIACDAIAY-----GVMASAYCKEG-K 887

Query: 361 ALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYN 420
           +LE  +KL+    V       +   ++I    ++  +     L  E+ K   +  +   N
Sbjct: 888 SLE-ALKLLNKSLVEGIKLEDDVFDALIFHLCKEKQISTVLELLSEMGKEELSLSSKTCN 946

Query: 421 TLIKAYVKAKIND 433
           TL+  + K+   D
Sbjct: 947 TLLLGFYKSGNED 959



 Score = 55.5 bits (132), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 79/314 (25%), Positives = 126/314 (40%), Gaps = 45/314 (14%)

Query: 180 NIEGLM-KVYSDMKRSEVEPNEVSYCILATAHAVA-------------------RLYT-- 217
           N+ GL  KVY  M  +++ P+  +Y  +  AH                       L+T  
Sbjct: 221 NMMGLFWKVYGSMVEAKIVPDVYTYTNVIKAHCKVGDVIKGKMVLSEMEKECKPNLFTYN 280

Query: 218 -----VAETYV--EALE------KSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQEL 264
                + +T    EALE      +   G +  T  +L+  +    + K+ + I+ ++   
Sbjct: 281 AFIGGLCQTGAVDEALEVKKLMMEKGLGPDGHTYTLLVDGFCKQKRSKEAKLIFESMPSS 340

Query: 265 P-NVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKA 323
             N    +Y   I+ F +   +  A  +  EM +         YN++I    K G + KA
Sbjct: 341 GLNPNRFTYTALIDGFIKEGNIEEALRIKDEMITRGLKLNVVTYNAMIGGIAKAGEMAKA 400

Query: 324 SGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLET 383
             L  EM M G +P+  TY  L  G  KS+   +  KA E    L+   K R  TP   T
Sbjct: 401 MSLFNEMLMAGIEPDTWTYNLLIDGYLKSH---DMAKACE----LLAEMKARKLTPSPFT 453

Query: 384 TLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKINDP--NLLRRMI 441
              +I       D+  A  + +++ +       F+Y TLIKAYV+    +    LL+ MI
Sbjct: 454 YSVLISGLCHSSDLQKANEVLDQMIRNGVKPNVFMYGTLIKAYVQESRYEMAIELLKIMI 513

Query: 442 LGGARPDAETYSLL 455
             G  PD   Y+ L
Sbjct: 514 ANGVLPDLFCYNCL 527


>gi|224084592|ref|XP_002307350.1| predicted protein [Populus trichocarpa]
 gi|222856799|gb|EEE94346.1| predicted protein [Populus trichocarpa]
          Length = 511

 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 88/447 (19%), Positives = 192/447 (42%), Gaps = 6/447 (1%)

Query: 14  FQSWMREGFPVHRGEIFHSINRLRKLQLNKRALEVMEWVIRERPYRPKELDYSYLLEFTI 73
            Q W+  G  V   ++     +L K +  K+ALE+++W+  +  +R     ++ ++E  +
Sbjct: 66  LQDWINNGNKVKLSQLNLISKQLLKSKRYKQALEILQWMENQNNFRITPGHHALMMELIV 125

Query: 74  KNHGISQGEKLFCCIPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVF 133
           K +G+++  + F  IP     +     L+   + +  I  +  +M K+   G  ++   +
Sbjct: 126 KVNGLNKAGEYFERIPGSGSKKAASLPLLHGYVKERDISKAESFMIKLSSSGLLVTPHPY 185

Query: 134 NRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKR 193
           N ++ L  +  + + +P ++ +MK +K+  +V ++++ M        +     VY +M  
Sbjct: 186 NEMMKLYMALSQYEKVPLVIAEMKRNKLCRNVLSYNLWMGAFGEVFEVAKAEMVYKEMVS 245

Query: 194 SE-VEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGK 252
            E V     +   LA  +  A     A   ++  E  ++ N       LI LY  L   +
Sbjct: 246 DENVGVGWSTLASLANVYIKAGFVDKALLVLKDAEMKLSTNGRLGYFFLITLYSSLKNKE 305

Query: 253 DLERIWATVQELPN-VRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVI 311
            + R+W   + +   +    Y+  I    ++  +  AE+++ E ++          N ++
Sbjct: 306 GVLRLWEASKAVGGRIPCADYMCVISCLVKVGDLVAAEQVFAEWETNCFKYDIRVSNVLL 365

Query: 312 SVYCKNGFIDKASGL-LKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLIT 370
             Y +NG + KA    L  +   GC PN  T+  L  G  KS  +++   A++ G  ++ 
Sbjct: 366 GAYVRNGLMGKAESFHLHTVERGGC-PNYKTWEILMEGWVKSQKMDKAIDAMKKGFSVLK 424

Query: 371 TKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAK 430
            ++     P     ++I E F + G+  +A +  + +          +Y   ++ Y+ A+
Sbjct: 425 VERC-DWRPSHSILMAIAEHFEKHGNFEDANHYIKAVHGLGVATLP-LYKLFLRMYLNAQ 482

Query: 431 INDPNLLRRMILGGARPDAETYSLLKL 457
               ++L+ M       D ET +L+ L
Sbjct: 483 RPAWDILKMMEKDRIELDDETSALVAL 509


>gi|224126121|ref|XP_002329666.1| predicted protein [Populus trichocarpa]
 gi|222870547|gb|EEF07678.1| predicted protein [Populus trichocarpa]
          Length = 821

 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 88/403 (21%), Positives = 163/403 (40%), Gaps = 24/403 (5%)

Query: 37  RKLQLNKRALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQGEKLFC------CIPK 90
           R  Q++K AL + +  ++E    P    Y+ +L    K     +  K+ C      C P 
Sbjct: 397 RAAQVDK-ALSLYDQ-MKESGCAPNVCTYNAILGMLGKKSQSEEMMKILCDMKVDGCAP- 453

Query: 91  DYQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIP 150
              N + +N ++  C +KG+ K      ++M+  G       FN LI  +   G      
Sbjct: 454 ---NRITWNTMLSMCGNKGMHKYVKRVFQEMKSCGFEPDRDTFNTLITASGRCGSDIDAE 510

Query: 151 NILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAH 210
            I  +M      P V+T++ L+   A   +      V  DMK    +P+E SY ++  ++
Sbjct: 511 KIYDEMLEAGFTPSVATYNALLNALARRGDWRTAESVIKDMKNKGFKPSETSYSLILNSY 570

Query: 211 AVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQEL---PNV 267
           A            + +       +W  L  LI+          +ER +  +Q+    P++
Sbjct: 571 AKGGYVKGINRIEKDIYDGHIFPSWMLLRTLILANFKCRALAGMERAFQALQKHGYKPDL 630

Query: 268 RSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLL 327
              + +L++  F R     RA E+   +Q          YNS++ +Y + G   KA  +L
Sbjct: 631 VVFNSMLSM--FSRKNMHDRAHEIMHLIQECGLQPDLVTYNSLMDLYARGGECWKAEEIL 688

Query: 328 KEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSI 387
           +E+  +G K + I+Y  +  G  +  L+ E  + L    ++I+    R   P + T  + 
Sbjct: 689 RELQNSGDKSDLISYNTVIKGFCRQGLMHEALRTLS---EMIS----RGIRPCIVTYNTF 741

Query: 388 IEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAK 430
           +  +A KG     + +   + K +       Y  ++  Y KAK
Sbjct: 742 VGGYAAKGMFAEIDEVLSYMTKHDCRPNELTYKIVVDGYCKAK 784



 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 61/257 (23%), Positives = 112/257 (43%), Gaps = 23/257 (8%)

Query: 210 HAVARL--YTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNV 267
           H+ +R   Y  A    E + +S       T +V++ +YG +  G+   +I   + E+   
Sbjct: 217 HSYSRCGKYERAVAIFEKMNESGLSPTLVTYNVMLDVYGKM--GRSWNKILGLLDEM--- 271

Query: 268 RSK-------SYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFI 320
           RSK       +    I A GR   +  A+E ++ ++S      T  YN+++ V+ K G  
Sbjct: 272 RSKGLGFDEFTCSTVISACGREGLLDEAKEFFVGLKSQGYAPGTVTYNALLQVFGKAGIY 331

Query: 321 DKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPW 380
            +A  ++KEM  N C P+A+TY  L     ++   EE       G  LI T       P 
Sbjct: 332 SEALSIMKEMEDNNCPPDAVTYNELVAAYVRAGFYEE-------GAALIDTMTENGIKPN 384

Query: 381 LETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKINDP--NLLR 438
             T  ++I  +     V  A +L++++K++        YN ++    K   ++    +L 
Sbjct: 385 AVTYTTMINAYGRAAQVDKALSLYDQMKESGCAPNVCTYNAILGMLGKKSQSEEMMKILC 444

Query: 439 RMILGGARPDAETYSLL 455
            M + G  P+  T++ +
Sbjct: 445 DMKVDGCAPNRITWNTM 461



 Score = 58.5 bits (140), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 80/394 (20%), Positives = 153/394 (38%), Gaps = 72/394 (18%)

Query: 94  NELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNIL 153
           N + Y  ++ A      +  +L    +M+  G + +   +N ++ +     + + +  IL
Sbjct: 384 NAVTYTTMINAYGRAAQVDKALSLYDQMKESGCAPNVCTYNAILGMLGKKSQSEEMMKIL 443

Query: 154 RQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVA 213
             MK D  AP+  T++ ++ +  N    + + +V+ +MK    EP+              
Sbjct: 444 CDMKVDGCAPNRITWNTMLSMCGNKGMHKYVKRVFQEMKSCGFEPDR------------- 490

Query: 214 RLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQE---LPNVRSK 270
                                  T + LI   G      D E+I+  + E    P+V   
Sbjct: 491 ----------------------DTFNTLITASGRCGSDIDAEKIYDEMLEAGFTPSV--A 526

Query: 271 SYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATE-QYNSVISVYCKNGFIDKASGLLKE 329
           +Y   + A  R      AE +  +M++ K  K +E  Y+ +++ Y K G++   + + K+
Sbjct: 527 TYNALLNALARRGDWRTAESVIKDMKN-KGFKPSETSYSLILNSYAKGGYVKGINRIEKD 585

Query: 330 MSMNGCKPNAITYRHLALGCFKSNLV---EEGFKALELG------------MKLITTKKV 374
           +      P+ +  R L L  FK   +   E  F+AL+              + + + K +
Sbjct: 586 IYDGHIFPSWMLLRTLILANFKCRALAGMERAFQALQKHGYKPDLVVFNSMLSMFSRKNM 645

Query: 375 RSST-------------PWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNT 421
                            P L T  S+++++A  G+   AE +  EL+ +        YNT
Sbjct: 646 HDRAHEIMHLIQECGLQPDLVTYNSLMDLYARGGECWKAEEILRELQNSGDKSDLISYNT 705

Query: 422 LIKAYVKAKINDPNL--LRRMILGGARPDAETYS 453
           +IK + +  +    L  L  MI  G RP   TY+
Sbjct: 706 VIKGFCRQGLMHEALRTLSEMISRGIRPCIVTYN 739



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 46/189 (24%), Positives = 85/189 (44%), Gaps = 10/189 (5%)

Query: 270 KSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNG-FIDKASGLLK 328
           ++Y   + ++ R  +  RA  ++ +M           YN ++ VY K G   +K  GLL 
Sbjct: 210 RAYTTILHSYSRCGKYERAVAIFEKMNESGLSPTLVTYNVMLDVYGKMGRSWNKILGLLD 269

Query: 329 EMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSII 388
           EM   G   +  T   +   C +  L++E  K   +G+      K +   P   T  +++
Sbjct: 270 EMRSKGLGFDEFTCSTVISACGREGLLDEA-KEFFVGL------KSQGYAPGTVTYNALL 322

Query: 389 EIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKINDPN--LLRRMILGGAR 446
           ++F + G    A ++ +E++  N       YN L+ AYV+A   +    L+  M   G +
Sbjct: 323 QVFGKAGIYSEALSIMKEMEDNNCPPDAVTYNELVAAYVRAGFYEEGAALIDTMTENGIK 382

Query: 447 PDAETYSLL 455
           P+A TY+ +
Sbjct: 383 PNAVTYTTM 391


>gi|225464138|ref|XP_002265372.1| PREDICTED: pentatricopeptide repeat-containing protein At5g46100
           [Vitis vinifera]
 gi|296087974|emb|CBI35257.3| unnamed protein product [Vitis vinifera]
          Length = 503

 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 79/335 (23%), Positives = 142/335 (42%), Gaps = 19/335 (5%)

Query: 126 HSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLM 185
           H    L+ +RL+    S    +    +L +MK +K       F  + +     H     +
Sbjct: 50  HQTFSLMISRLV----SANHFRLAEELLCRMKEEKCNITEDIFLSICRAYGRVHKPLDAV 105

Query: 186 KVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILY 245
           +V+  MK  E EP++ SY  +           +A  +   + +     + ++L+VLI   
Sbjct: 106 RVFRKMKEYECEPSQKSYITVFAILVGENQLKLALRFYRYMREMGIPPSVASLNVLI--K 163

Query: 246 GYLAKGKDLERIWATVQELPN----VRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQL 301
                   ++      +E+PN      S +Y   I    R+ ++  A+EL+ EM++    
Sbjct: 164 ALCKNSGTMDAALRIFREMPNRGCPPDSYTYGTLINGLCRLGKIGEAKELFKEMETKACS 223

Query: 302 KATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKA 361
                Y S+I   C++  +D A  LL+EM+  G KPN  TY  L  G  KS       +A
Sbjct: 224 PTVVTYTSLIHGLCQSKDLDSAIRLLEEMASKGIKPNVFTYSSLMDGHCKSGCSS---RA 280

Query: 362 LELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNT 421
           LEL   +++    R   P + T  +++    ++G +  A  + + +K         +Y  
Sbjct: 281 LELLDMMVS----RRHLPNMITYSTLVHGLCKEGKLQEAVEILDRMKLQGLRPDAGLYGK 336

Query: 422 LIKAYVK-AKIND-PNLLRRMILGGARPDAETYSL 454
           +I  +    K ++  N L  M+LGG  P+  T+SL
Sbjct: 337 IISGFCDICKFHEAANFLDEMVLGGISPNRLTWSL 371



 Score = 45.1 bits (105), Expect = 0.078,   Method: Compositional matrix adjust.
 Identities = 63/340 (18%), Positives = 134/340 (39%), Gaps = 47/340 (13%)

Query: 14  FQSWMRE-GFPVHRGEIFHSINRLRK-LQLNKRALEVMEWVIRERPYR---PKELDYSYL 68
           F  +MRE G P        S+N L K L  N   ++    + RE P R   P    Y  L
Sbjct: 142 FYRYMREMGIPPSVA----SLNVLIKALCKNSGTMDAALRIFREMPNRGCPPDSYTYGTL 197

Query: 69  LEFTIKNHGISQGEKLF------CCIPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMR 122
           +    +   I + ++LF       C P      + Y +L+        +  ++  +++M 
Sbjct: 198 INGLCRLGKIGEAKELFKEMETKACSP----TVVTYTSLIHGLCQSKDLDSAIRLLEEMA 253

Query: 123 VLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIE 182
             G   +   ++ L+  +   G       +L  M + +  P++ T+  L+     +  ++
Sbjct: 254 SKGIKPNVFTYSSLMDGHCKSGCSSRALELLDMMVSRRHLPNMITYSTLVHGLCKEGKLQ 313

Query: 183 GLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLI 242
             +++   MK   + P+   Y  + +       +  A  +++ +       N  T  + +
Sbjct: 314 EAVEILDRMKLQGLRPDAGLYGKIISGFCDICKFHEAANFLDEMVLGGISPNRLTWSLHV 373

Query: 243 ILYGYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLK 302
            ++  + +G           E PN                    RA +L+L M++     
Sbjct: 374 RIHNIVVQG--------LCTEHPN--------------------RAFQLYLSMRTRGISI 405

Query: 303 ATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITY 342
             + ++S+++ +C  G + KA+ L+ EM ++GC P+ +T+
Sbjct: 406 DAKTFDSLVNYFCNKGDLHKAAHLVDEMVLDGCIPDEVTW 445


>gi|242039357|ref|XP_002467073.1| hypothetical protein SORBIDRAFT_01g019180 [Sorghum bicolor]
 gi|241920927|gb|EER94071.1| hypothetical protein SORBIDRAFT_01g019180 [Sorghum bicolor]
          Length = 808

 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 94/440 (21%), Positives = 187/440 (42%), Gaps = 56/440 (12%)

Query: 33  INRLRKLQLNKRALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQGEKLFCCIPKDY 92
           I+ L K      AL  ++ + +E  + P  + ++ L+   + N G  Q  K   C+   Y
Sbjct: 222 IDGLCKQDKIGEALSFLQEIRKEGKFIPLGMTFNTLMS-ALCNWGFIQDAKSVFCLMLKY 280

Query: 93  ---QNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTI 149
               +   Y+ ++      G +  +    + +   G  +  +  N LI      G  + I
Sbjct: 281 GLNPSRHTYSTIIHGLCKIGSVSEAFNIFQSVTEEGMELDIVTCNSLINGFRLHGHTREI 340

Query: 150 PNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATA 209
           P ++  M+   V P + T+ IL+       ++E  MK+  D+    +E N V+Y +L  A
Sbjct: 341 PKMIEMMRGLGVEPDIVTYTILIAGHCEGGDVEEGMKIRKDILGQGMELNIVTYSVLINA 400

Query: 210 HAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRS 269
                L+   E                      +L    + G +L+ I            
Sbjct: 401 LFKKGLFYEVEN---------------------LLGEICSVGLELDVI------------ 427

Query: 270 KSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATE-QYNSVISVYCKNGFIDKASGLLK 328
            +Y + I  + ++ ++ RA ++W  M S +++  T   + S++   CK GF+D+A   L+
Sbjct: 428 -AYSILIHGYSKLGEIGRALQVWNLMCSSQRVTPTSVNHVSILLGLCKKGFLDEARSYLE 486

Query: 329 EMSMNGCKPNAITYRHLALGCFKSNLVEEGF-KALELG--MKLITTKKVRSSTPWLETTL 385
            ++      + + Y          N+V +G+ K  ++G  ++L     +    P + T  
Sbjct: 487 TIASKYQPSDVVLY----------NVVIDGYAKVGDIGNAVQLYDAIIMAGMCPTIVTCN 536

Query: 386 SIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKA-KINDP-NLLRRMILG 443
           S++  + + GD+  AE+ F  ++ ++    T  Y TL+ A  +A K++   +L + M   
Sbjct: 537 SLLYGYCKFGDLHMAESYFTAIQLSDLLPTTVTYTTLMDALSEAGKVHSMLSLFKEMTGK 596

Query: 444 GARPDAETYSLL--KLAEQF 461
           G +P+A TYS++   L +QF
Sbjct: 597 GIKPNAVTYSVVIKGLCKQF 616



 Score = 49.7 bits (117), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 90/423 (21%), Positives = 159/423 (37%), Gaps = 26/423 (6%)

Query: 14  FQSWMREGFPVHRGEIFHSINRLRKLQLNKRALEVMEWVIRERPYRPKELDYSYLLEFTI 73
           FQS   EG  +        IN  R L  + R +  M  ++R     P  + Y+ L+    
Sbjct: 309 FQSVTEEGMELDIVTCNSLINGFR-LHGHTREIPKMIEMMRGLGVEPDIVTYTILIAGHC 367

Query: 74  KNHGISQGEKLFCCIPKDYQ------NELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHS 127
           +   + +G K    I KD        N + Y+ L+ A   KG+       + ++  +G  
Sbjct: 368 EGGDVEEGMK----IRKDILGQGMELNIVTYSVLINALFKKGLFYEVENLLGEICSVGLE 423

Query: 128 ISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKV 187
           +  + ++ LI   S  G       +   M + +     S  H+ + +           + 
Sbjct: 424 LDVIAYSILIHGYSKLGEIGRALQVWNLMCSSQRVTPTSVNHVSILLGLCKKGFLDEARS 483

Query: 188 YSDMKRSEVEPNEVS-YCILATAHA-VARLYTVAETYVEALEKSMTGNNWSTLDVLIILY 245
           Y +   S+ +P++V  Y ++   +A V  +    + Y   +   M G   + +    +LY
Sbjct: 484 YLETIASKYQPSDVVLYNVVIDGYAKVGDIGNAVQLYDAII---MAGMCPTIVTCNSLLY 540

Query: 246 GYLAKGK-DLERIWATVQELPNV--RSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLK 302
           GY   G   +   + T  +L ++   + +Y   ++A     +V     L+ EM       
Sbjct: 541 GYCKFGDLHMAESYFTAIQLSDLLPTTVTYTTLMDALSEAGKVHSMLSLFKEMTGKGIKP 600

Query: 303 ATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKAL 362
               Y+ VI   CK      A  +L +M + G   + I Y  L  G  ++   +  F   
Sbjct: 601 NAVTYSVVIKGLCKQFMFHDAKNVLDDMCIEGFDADPIPYNTLIQGFCETQDAKNAFGVY 660

Query: 363 ELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTL 422
           EL +        R   P   T   ++ +   KG V +AE   E  +K       F Y TL
Sbjct: 661 ELMV-------FRGVMPTPVTYNLLVNVLCSKGLVIHAEMQLESFRKQGAKLRKFAYITL 713

Query: 423 IKA 425
           IKA
Sbjct: 714 IKA 716


>gi|297739653|emb|CBI29835.3| unnamed protein product [Vitis vinifera]
          Length = 852

 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 89/340 (26%), Positives = 151/340 (44%), Gaps = 29/340 (8%)

Query: 100 NLVIACLDK----GVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQ 155
           N+VI CL K    G        MK+ R   +    + F  +I L S  G+ +        
Sbjct: 306 NIVIYCLVKLGQNGKAIDIFNSMKEKRSECYP-DVVTFTTIIHLYSVCGQIENCQTAFNT 364

Query: 156 MKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARL 215
           M A+ + P++ +++ L+   A+    +    V++++K++   P+ VSY  L  A+  +  
Sbjct: 365 MLAEGLKPNIVSYNALIGAYASHGMDKEAFSVFNEIKKNGFHPDVVSYTSLLNAYGKSGK 424

Query: 216 YTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQEL------PNVRS 269
              A    E + ++    N  + + LI  YG  +KG   E +   + E+      PN+ S
Sbjct: 425 PEKAMKVFELMRRNHCKPNLVSYNALIDAYG--SKGLLTEAV-EILHEMERNGVQPNIVS 481

Query: 270 KSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLK-ATEQYNSVISVYCKNGFIDKASGLLK 328
              +LA  A GR  Q  + + + L    ++ +K  T  YNS I  Y   G  DKA  L +
Sbjct: 482 ICTLLA--ACGRCGQKVKIKSV-LSAAELRGIKLNTTAYNSAIGSYLSVGEYDKALSLYR 538

Query: 329 EMSMNGCKPNAITYRHLALGCFKSNLVEE--GFKALELGMKLITTKKVRSSTPWLETTLS 386
            M     KP+ +TY  L  GC K +   E  GF    + +K+  +K+V S         S
Sbjct: 539 AMRTKKVKPDPVTYNVLISGCCKMSKYGEALGFLDEMMDLKIPLSKEVYS---------S 589

Query: 387 IIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAY 426
           +I  ++++G V  AE++F ++K          Y  +I AY
Sbjct: 590 VICAYSKQGQVTEAESMFTKMKMVGCRPDVITYTAMIHAY 629



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 90/409 (22%), Positives = 166/409 (40%), Gaps = 49/409 (11%)

Query: 98  YNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMK 157
           YNNL+ AC   G  K +L   KKM   G     +  N ++       +   + +    MK
Sbjct: 235 YNNLINACGSSGNWKEALNVCKKMTENGVGPDLVTHNIVLSAYKRGNQYSKVLSYFELMK 294

Query: 158 ADKVAPHVSTFHI----LMKIEANDHNIEGLMKVYSDM--KRSEVEPNEVSYCILATAHA 211
              + P  +T +I    L+K+  N   I+    +++ M  KRSE  P+ V++  +   ++
Sbjct: 295 GTNIRPDTTTLNIVIYCLVKLGQNGKAID----IFNSMKEKRSECYPDVVTFTTIIHLYS 350

Query: 212 VARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQE---LPNVR 268
           V       +T    +       N  + + LI  Y      K+   ++  +++    P+V 
Sbjct: 351 VCGQIENCQTAFNTMLAEGLKPNIVSYNALIGAYASHGMDKEAFSVFNEIKKNGFHPDV- 409

Query: 269 SKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLK 328
             SY   + A+G+  +  +A +++  M+          YN++I  Y   G + +A  +L 
Sbjct: 410 -VSYTSLLNAYGKSGKPEKAMKVFELMRRNHCKPNLVSYNALIDAYGSKGLLTEAVEILH 468

Query: 329 EMSMNGCKPNAITYRHLALGCFKSNL---VEEGFKALEL-GMKLITTK------------ 372
           EM  NG +PN ++   L   C +      ++    A EL G+KL TT             
Sbjct: 469 EMERNGVQPNIVSICTLLAACGRCGQKVKIKSVLSAAELRGIKLNTTAYNSAIGSYLSVG 528

Query: 373 ------------KVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYN 420
                       + +   P   T   +I    +    G A    +E+          VY+
Sbjct: 529 EYDKALSLYRAMRTKKVKPDPVTYNVLISGCCKMSKYGEALGFLDEMMDLKIPLSKEVYS 588

Query: 421 TLIKAYVK-AKINDP-NLLRRMILGGARPDAETYSLL----KLAEQFQK 463
           ++I AY K  ++ +  ++  +M + G RPD  TY+ +     +AE ++K
Sbjct: 589 SVICAYSKQGQVTEAESMFTKMKMVGCRPDVITYTAMIHAYDVAENWEK 637



 Score = 62.0 bits (149), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 58/283 (20%), Positives = 121/283 (42%), Gaps = 14/283 (4%)

Query: 132 VFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDM 191
            +N LI  +   G+ +   NI+  M    + P  ST++ L+    +  N +  + V   M
Sbjct: 199 TYNALINAHGRAGQWRWAMNIMDDMLRAAIPPSRSTYNNLINACGSSGNWKEALNVCKKM 258

Query: 192 KRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKG 251
             + V P+ V++ I+ +A+     Y+   +Y E ++ +    + +TL+++I     L + 
Sbjct: 259 TENGVGPDLVTHNIVLSAYKRGNQYSKVLSYFELMKGTNIRPDTTTLNIVIYCLVKLGQN 318

Query: 252 KDLERIWATVQE-----LPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQ 306
                I+ +++E      P+V   ++   I  +    Q+   +  +  M +         
Sbjct: 319 GKAIDIFNSMKEKRSECYPDV--VTFTTIIHLYSVCGQIENCQTAFNTMLAEGLKPNIVS 376

Query: 307 YNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGM 366
           YN++I  Y  +G   +A  +  E+  NG  P+ ++Y  L     KS   E+  K  EL  
Sbjct: 377 YNALIGAYASHGMDKEAFSVFNEIKKNGFHPDVVSYTSLLNAYGKSGKPEKAMKVFEL-- 434

Query: 367 KLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKK 409
                 +     P L +  ++I+ +  KG +  A  +  E+++
Sbjct: 435 -----MRRNHCKPNLVSYNALIDAYGSKGLLTEAVEILHEMER 472



 Score = 40.4 bits (93), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 49/217 (22%), Positives = 90/217 (41%), Gaps = 22/217 (10%)

Query: 258 WATVQELPN-----VRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKA-TEQYNSVI 311
           W  V+ L N        K++ L I    +I  +  + +++  M++ K   A  + YN +I
Sbjct: 110 WDDVEGLLNRWVGRFSRKNFPLLIREITQIGSLEHSVQVFRWMKNQKNYCARNDIYNMMI 169

Query: 312 SVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITT 371
            ++ ++  +D+A GL  EM    CKP+A TY  L        +   G          I  
Sbjct: 170 RLHARHNIVDQARGLFFEMQKWRCKPDAETYNAL--------INAHGRAGQWRWAMNIMD 221

Query: 372 KKVRSSTPWLETTL-SIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAK 430
             +R++ P   +T  ++I      G+   A N+ +++ +         +N ++ AY +  
Sbjct: 222 DMLRAAIPPSRSTYNNLINACGSSGNWKEALNVCKKMTENGVGPDLVTHNIVLSAYKRGN 281

Query: 431 INDPNLLRRMILGGA--RPDAET-----YSLLKLAEQ 460
                L    ++ G   RPD  T     Y L+KL + 
Sbjct: 282 QYSKVLSYFELMKGTNIRPDTTTLNIVIYCLVKLGQN 318



 Score = 38.5 bits (88), Expect = 7.3,   Method: Compositional matrix adjust.
 Identities = 55/230 (23%), Positives = 91/230 (39%), Gaps = 32/230 (13%)

Query: 258 WATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKN 317
           W   Q+    R+  Y + I    R   V +A  L+ EMQ  +     E YN++I+ + + 
Sbjct: 151 WMKNQKNYCARNDIYNMMIRLHARHNIVDQARGLFFEMQKWRCKPDAETYNALINAHGRA 210

Query: 318 GFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALE------LGMKLITT 371
           G    A  ++ +M      P+  TY +L   C  S   +E     +      +G  L+T 
Sbjct: 211 GQWRWAMNIMDDMLRAAIPPSRSTYNNLINACGSSGNWKEALNVCKKMTENGVGPDLVTH 270

Query: 372 KKVRSS----------TPWLE-----------TTLSI-IEIFAEKGDVGNAENLFEELKK 409
             V S+            + E           TTL+I I    + G  G A ++F  +K+
Sbjct: 271 NIVLSAYKRGNQYSKVLSYFELMKGTNIRPDTTTLNIVIYCLVKLGQNGKAIDIFNSMKE 330

Query: 410 ANYTKYTFV--YNTLIKAY-VKAKI-NDPNLLRRMILGGARPDAETYSLL 455
                Y  V  + T+I  Y V  +I N       M+  G +P+  +Y+ L
Sbjct: 331 KRSECYPDVVTFTTIIHLYSVCGQIENCQTAFNTMLAEGLKPNIVSYNAL 380


>gi|357151724|ref|XP_003575883.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53700,
           chloroplastic-like [Brachypodium distachyon]
          Length = 757

 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 85/393 (21%), Positives = 158/393 (40%), Gaps = 35/393 (8%)

Query: 94  NELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNIL 153
           +E  +  L+   +++G I+ +L    +M  +G S + +  N LI      GR       +
Sbjct: 230 DETTFTTLMEGFVEEGSIEAALRLKARMSEMGCSPTSVTVNVLINGYCKLGRVGDALGYI 289

Query: 154 RQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVA 213
           +Q  AD   P   TF   +     + +++  +KV   M +   EP+  +Y  +       
Sbjct: 290 QQEIADGFEPDRVTFSTFVNGLCQNGHVDHALKVLGLMLQEGCEPDVYTYSTVINCLCNN 349

Query: 214 RLYTVAETYVEALEKSMTGNNWSTLDVLIILY---GYLAKGKDLERIWATVQELPNVRSK 270
                A+  V  +  S    + +T + LI+       L +  DL R        PNV   
Sbjct: 350 GELEEAKGIVNQMVDSGCLPDTTTFNTLIVALCTENQLEEALDLARELTVKGLSPNV--Y 407

Query: 271 SYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEM 330
           ++ + I A  ++     A  L+ EM+S         YN +I   C +G + KA  LLKEM
Sbjct: 408 TFNILINALCKVGDPHLAVRLFEEMKSSGCTPDEVTYNILIDNLCSSGKLAKALDLLKEM 467

Query: 331 SMNGCKPNAITYRHLALGCFKSNLVEEGFKALE------LGMKLIT----------TKKV 374
            ++GC  + +TY  +  G  K   +EE  +  +      +G   IT           +++
Sbjct: 468 EVSGCPQSTVTYNTIIDGLCKRRRIEEAEEVFDQMDVTGIGRNAITFNTLIDGLCNAERI 527

Query: 375 RSSTPWLETTL------------SIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTL 422
             +   ++  +            SI+  + ++G++  A ++ + +    +      Y TL
Sbjct: 528 DDAAELVDQMISEGLQPNNVTYNSILTHYCKQGNISKAADILQTMTANGFEVDVVTYATL 587

Query: 423 IKAYVKAKINDP--NLLRRMILGGARPDAETYS 453
           I    KA+       LLR M + G +P  + Y+
Sbjct: 588 INGLCKARRTQAALKLLRGMRMKGMKPTPKAYN 620



 Score = 73.2 bits (178), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 86/366 (23%), Positives = 150/366 (40%), Gaps = 47/366 (12%)

Query: 94  NELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNIL 153
           N  +YN+L+    +   IKL      +M   G     + FN +I       + +T   +L
Sbjct: 160 NTEVYNHLLTVLAEGSKIKLLESAYTEMSSQGIEPDVVTFNTVIDALCRARQARTAVLML 219

Query: 154 RQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVA 213
            +M +  VAP  +TF  LM+    + +IE  +++ + M      P  V+  +L   +   
Sbjct: 220 EEMSSCDVAPDETTFTTLMEGFVEEGSIEAALRLKARMSEMGCSPTSVTVNVLINGY--C 277

Query: 214 RLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSKSYV 273
           +L  V                    D L  +   +A G + +R+  +          ++V
Sbjct: 278 KLGRVG-------------------DALGYIQQEIADGFEPDRVTFS----------TFV 308

Query: 274 LAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMN 333
             +   G +    +   L L+      +     Y++VI+  C NG +++A G++ +M  +
Sbjct: 309 NGLCQNGHVDHALKVLGLMLQEGCEPDVYT---YSTVINCLCNNGELEEAKGIVNQMVDS 365

Query: 334 GCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAE 393
           GC P+  T+  L +     N +EE   AL+L  +L     V+  +P + T   +I    +
Sbjct: 366 GCLPDTTTFNTLIVALCTENQLEE---ALDLAREL----TVKGLSPNVYTFNILINALCK 418

Query: 394 KGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVK----AKINDPNLLRRMILGGARPDA 449
            GD   A  LFEE+K +  T     YN LI         AK  D  LL+ M + G     
Sbjct: 419 VGDPHLAVRLFEEMKSSGCTPDEVTYNILIDNLCSSGKLAKALD--LLKEMEVSGCPQST 476

Query: 450 ETYSLL 455
            TY+ +
Sbjct: 477 VTYNTI 482



 Score = 59.7 bits (143), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 69/287 (24%), Positives = 118/287 (41%), Gaps = 20/287 (6%)

Query: 87  CIPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRR 146
           C P    +E+ YN L+      G +  +L+ +K+M V G   S + +N +I       R 
Sbjct: 437 CTP----DEVTYNILIDNLCSSGKLAKALDLLKEMEVSGCPQSTVTYNTIIDGLCKRRRI 492

Query: 147 KTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCIL 206
           +    +  QM    +  +  TF+ L+    N   I+   ++   M    ++PN V+Y  +
Sbjct: 493 EEAEEVFDQMDVTGIGRNAITFNTLIDGLCNAERIDDAAELVDQMISEGLQPNNVTYNSI 552

Query: 207 ATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKG-KDLERIWATVQELP 265
            T +      + A   ++    +MT N +   +V ++ Y  L  G     R  A ++ L 
Sbjct: 553 LTHYCKQGNISKAADILQ----TMTANGF---EVDVVTYATLINGLCKARRTQAALKLLR 605

Query: 266 NVR-------SKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNG 318
            +R        K+Y   I++  R      A  L+ EM  V        Y  V    C+ G
Sbjct: 606 GMRMKGMKPTPKAYNPVIQSLFRGNNGRDALSLFREMTEVGGPPDAFTYKIVFRGLCRGG 665

Query: 319 F-IDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALEL 364
             I +A   L EM+ NG  P   ++R LA G     + +   +A+EL
Sbjct: 666 GPIKEAFDFLVEMADNGFIPEFSSFRMLAEGLLNLGMDDYLIRAIEL 712



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 75/365 (20%), Positives = 143/365 (39%), Gaps = 18/365 (4%)

Query: 10  VGSAF---QSWMREGFPVHRGEIFHSINRLRKLQLNKRALEVMEWVIRERPYRPKELDYS 66
           VG A    Q  + +GF   R      +N L +      AL+V+  +++E    P    YS
Sbjct: 282 VGDALGYIQQEIADGFEPDRVTFSTFVNGLCQNGHVDHALKVLGLMLQE-GCEPDVYTYS 340

Query: 67  YLLEFTIKNHGISQGEKLF------CCIPKDYQNELLYNNLVIACLDKGVIKLSLEYMKK 120
            ++     N  + + + +        C+P    +   +N L++A   +  ++ +L+  ++
Sbjct: 341 TVINCLCNNGELEEAKGIVNQMVDSGCLP----DTTTFNTLIVALCTENQLEEALDLARE 396

Query: 121 MRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHN 180
           + V G S +   FN LI      G       +  +MK+    P   T++IL+    +   
Sbjct: 397 LTVKGLSPNVYTFNILINALCKVGDPHLAVRLFEEMKSSGCTPDEVTYNILIDNLCSSGK 456

Query: 181 IEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDV 240
           +   + +  +M+ S    + V+Y  +       R    AE   + ++ +  G N  T + 
Sbjct: 457 LAKALDLLKEMEVSGCPQSTVTYNTIIDGLCKRRRIEEAEEVFDQMDVTGIGRNAITFNT 516

Query: 241 LIILYGYLAKGKDL-ERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVK 299
           LI       +  D  E +   + E     + +Y   +  + +   +S+A ++   M +  
Sbjct: 517 LIDGLCNAERIDDAAELVDQMISEGLQPNNVTYNSILTHYCKQGNISKAADILQTMTANG 576

Query: 300 QLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGF 359
                  Y ++I+  CK      A  LL+ M M G KP    Y  +    F+ N    G 
Sbjct: 577 FEVDVVTYATLINGLCKARRTQAALKLLRGMRMKGMKPTPKAYNPVIQSLFRGN---NGR 633

Query: 360 KALEL 364
            AL L
Sbjct: 634 DALSL 638


>gi|299471526|emb|CBN80012.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 732

 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 93/372 (25%), Positives = 158/372 (42%), Gaps = 30/372 (8%)

Query: 94  NELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNIL 153
           N ++Y+  + AC   G  + +++ +K+M  +G +   + ++ +I   +  G+ +    +L
Sbjct: 255 NVIVYSAAISACRKGGQWETAVDLLKEMPAVGLAPDVITYSTVIDACAKRGQWEPAFRLL 314

Query: 154 RQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVA 213
            +M    V  ++ T+ I++   A     E  + +  +M+ + V P+ ++Y   +T  A A
Sbjct: 315 MEMPTKGVVANIITYSIVIGACAKWGQWEEAVALLREMQENGVAPDVITYS--STISACA 372

Query: 214 RLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQEL------PNV 267
           +     E      E  M G   + +   I++     +G+  E I   +QE+      P+V
Sbjct: 373 KKGQWEEAVGLLREMPMEGVTPNAISYGIVISACAKRGRWREAI-DLLQEMQAHGVPPDV 431

Query: 268 RSKSYVLAIEAFGRIAQVSRAEE-LWL--EMQSVKQLKATEQYNSVISVYCKNGFIDKAS 324
              +Y  AI+A    AQ SR E+ LWL  EM +         YNS I    K G    A 
Sbjct: 432 --INYSAAIDA---CAQASRWEQALWLLREMPATGLTPNVISYNSAIDACAKTGRSKIAV 486

Query: 325 GLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETT 384
            LL+EM  +G  P+ ITY  +   C      EE        + L    + +  TP + + 
Sbjct: 487 ELLREMPAHGLAPDVITYSAVIASCAMGRQWEE-------ALDLFREMQRQGITPDVVSC 539

Query: 385 LSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKA----KINDPNLLRRM 440
            + I   A+ G    A ++  E+           Y T I A  K     +I D  LLR M
Sbjct: 540 NTAINACAQGGWWEEALDVLGEMPTMGLVPDAISYRTAIDACAKGDRWKEIID--LLREM 597

Query: 441 ILGGARPDAETY 452
              G  PDA +Y
Sbjct: 598 STVGLTPDAISY 609



 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 87/375 (23%), Positives = 135/375 (36%), Gaps = 56/375 (14%)

Query: 88  IPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRK 147
           +  D QN   Y++ + AC +    + ++E +  M   G     L ++  I   +   R K
Sbjct: 182 VKPDSQN---YSSAIAACGNARQWERAVELLASMAARGTPPDVLTYSSAIAACAKVSRWK 238

Query: 148 TIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILA 207
               +LR MK   V P+V  +   +         E  + +  +M    + P+ ++Y    
Sbjct: 239 EAVGLLRSMKGQGVKPNVIVYSAAISACRKGGQWETAVDLLKEMPAVGLAPDVITY---- 294

Query: 208 TAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPN- 266
                        T ++A  K      W     L++                   E+P  
Sbjct: 295 ------------STVIDACAKR---GQWEPAFRLLM-------------------EMPTK 320

Query: 267 ---VRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKA 323
                  +Y + I A  +  Q   A  L  EMQ          Y+S IS   K G  ++A
Sbjct: 321 GVVANIITYSIVIGACAKWGQWEEAVALLREMQENGVAPDVITYSSTISACAKKGQWEEA 380

Query: 324 SGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLET 383
            GLL+EM M G  PNAI+Y  +   C K     E        + L+   +     P +  
Sbjct: 381 VGLLREMPMEGVTPNAISYGIVISACAKRGRWRE-------AIDLLQEMQAHGVPPDVIN 433

Query: 384 TLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVK---AKINDPNLLRRM 440
             + I+  A+      A  L  E+     T     YN+ I A  K   +KI    LLR M
Sbjct: 434 YSAAIDACAQASRWEQALWLLREMPATGLTPNVISYNSAIDACAKTGRSKIA-VELLREM 492

Query: 441 ILGGARPDAETYSLL 455
              G  PD  TYS +
Sbjct: 493 PAHGLAPDVITYSAV 507



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 65/282 (23%), Positives = 111/282 (39%), Gaps = 34/282 (12%)

Query: 88  IPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRK 147
           +P D  N   Y+  + AC      + +L  +++M   G + + + +N  I   +  GR K
Sbjct: 427 VPPDVIN---YSAAIDACAQASRWEQALWLLREMPATGLTPNVISYNSAIDACAKTGRSK 483

Query: 148 TIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVS--YCI 205
               +LR+M A  +AP V T+  ++   A     E  + ++ +M+R  + P+ VS    I
Sbjct: 484 IAVELLREMPAHGLAPDVITYSAVIASCAMGRQWEEALDLFREMQRQGITPDVVSCNTAI 543

Query: 206 LATAHA--------------VARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKG 251
            A A                   L   A +Y  A++    G+ W  +             
Sbjct: 544 NACAQGGWWEEALDVLGEMPTMGLVPDAISYRTAIDACAKGDRWKEI------------- 590

Query: 252 KDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVI 311
            DL R  +TV   P+  + SY  A+ A         A  L  +M +V        YNS I
Sbjct: 591 IDLLREMSTVGLTPD--AISYRFAMSACSVDGLWKEALVLLRDMLAVGLSPDVVTYNSAI 648

Query: 312 SVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSN 353
           +   K G   +A+ LL++M   G  P+  ++      C   +
Sbjct: 649 NACAKGGRWKEATVLLRQMPTFGLAPDVNSFNAAIDACGNGD 690



 Score = 52.8 bits (125), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 62/274 (22%), Positives = 114/274 (41%), Gaps = 19/274 (6%)

Query: 96  LLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQ 155
           + Y++ + AC  KG  + ++  +++M + G + + + +  +I   +  GR +   ++L++
Sbjct: 362 ITYSSTISACAKKGQWEEAVGLLREMPMEGVTPNAISYGIVISACAKRGRWREAIDLLQE 421

Query: 156 MKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARL 215
           M+A  V P V  +   +   A     E  + +  +M  + + PN +SY     A A    
Sbjct: 422 MQAHGVPPDVINYSAAIDACAQASRWEQALWLLREMPATGLTPNVISYNSAIDACAKTGR 481

Query: 216 YTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQEL----------P 265
             +A   VE L + M  +    L   +I Y  +     + R W    +L          P
Sbjct: 482 SKIA---VELL-REMPAHG---LAPDVITYSAVIASCAMGRQWEEALDLFREMQRQGITP 534

Query: 266 NVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASG 325
           +V S +   AI A  +      A ++  EM ++  +     Y + I    K     +   
Sbjct: 535 DVVSCN--TAINACAQGGWWEEALDVLGEMPTMGLVPDAISYRTAIDACAKGDRWKEIID 592

Query: 326 LLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGF 359
           LL+EMS  G  P+AI+YR     C    L +E  
Sbjct: 593 LLREMSTVGLTPDAISYRFAMSACSVDGLWKEAL 626



 Score = 48.9 bits (115), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 30/110 (27%), Positives = 52/110 (47%)

Query: 94  NELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNIL 153
           + + Y   + AC   G+ K +L  ++ M  +G S   + +N  I   +  GR K    +L
Sbjct: 605 DAISYRFAMSACSVDGLWKEALVLLRDMLAVGLSPDVVTYNSAINACAKGGRWKEATVLL 664

Query: 154 RQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSY 203
           RQM    +AP V++F+  +    N       ++V  +M+   V PNE +Y
Sbjct: 665 RQMPTFGLAPDVNSFNAAIDACGNGDQWGTAVEVLFEMRALGVSPNEATY 714


>gi|297741319|emb|CBI32450.3| unnamed protein product [Vitis vinifera]
          Length = 851

 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 89/372 (23%), Positives = 151/372 (40%), Gaps = 49/372 (13%)

Query: 87  CIPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRR 146
           C+P    N + YN L+ A    G I  +   +K M   G   + + +N +I      G  
Sbjct: 41  CLP----NVVTYNTLIDAYCKMGRIDEAFGLLKSMSSKGMQPNLISYNVIINGLCREGSM 96

Query: 147 KTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCIL 206
           K    IL +M      P   T++ L+     + N    + ++++M R+ V P+ V+Y  L
Sbjct: 97  KEAWEILEEMGYKGFTPDEVTYNTLLNGYCKEGNFHQALVIHAEMVRNGVSPSVVTYTAL 156

Query: 207 ATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPN 266
             +   AR    A  + + +                             RI       PN
Sbjct: 157 INSMCKARNLNRAMEFFDQM-----------------------------RIRGL---RPN 184

Query: 267 VRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGL 326
            R  +Y   I+ F R   ++ A  +  EM       +   YN+ I  +C    +++A G+
Sbjct: 185 ER--TYTTLIDGFSRQGLLNEAYRILNEMTESGFSPSVVTYNAFIHGHCVLERMEEALGV 242

Query: 327 LKEMSMNGCKPNAITYRHLALG-CFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTL 385
           ++EM   G  P+ ++Y  +  G C K  L     +A ++  +++     +  +P   T  
Sbjct: 243 VQEMVEKGLAPDVVSYSTIISGFCRKGELD----RAFQMKQEMVE----KGVSPDAVTYS 294

Query: 386 SIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAY-VKAKINDP-NLLRRMILG 443
           S+I+   E   +  A +L +E+         F Y TLI AY V+  +N   +L   MI  
Sbjct: 295 SLIQGLCEMRRLTEACDLSQEMLDMGLPPDEFTYTTLINAYCVEGDLNKALHLHDEMIHK 354

Query: 444 GARPDAETYSLL 455
           G  PDA TYS+L
Sbjct: 355 GFLPDAVTYSVL 366



 Score = 72.8 bits (177), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 57/198 (28%), Positives = 95/198 (47%), Gaps = 21/198 (10%)

Query: 265 PNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKAS 324
           PNV +  Y + I  F  + ++ +    + EM+    L     YN++I  YCK G ID+A 
Sbjct: 8   PNVYT--YNILIRGFCSVGELQKGLGCFGEMERNGCLPNVVTYNTLIDAYCKMGRIDEAF 65

Query: 325 GLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKAL-ELGMKLITTKKVRSSTPWLET 383
           GLLK MS  G +PN I+Y  +  G  +   ++E ++ L E+G K  T  +V  +T     
Sbjct: 66  GLLKSMSSKGMQPNLISYNVIINGLCREGSMKEAWEILEEMGYKGFTPDEVTYNT----- 120

Query: 384 TLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKINDPNLLR----- 438
              ++  + ++G+   A  +  E+ +   +     Y  LI +  KA+    NL R     
Sbjct: 121 ---LLNGYCKEGNFHQALVIHAEMVRNGVSPSVVTYTALINSMCKAR----NLNRAMEFF 173

Query: 439 -RMILGGARPDAETYSLL 455
            +M + G RP+  TY+ L
Sbjct: 174 DQMRIRGLRPNERTYTTL 191



 Score = 68.2 bits (165), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 68/302 (22%), Positives = 130/302 (43%), Gaps = 43/302 (14%)

Query: 156 MKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARL 215
           M   +V+P+V T++IL++   +   ++  +  + +M+R+   PN V+Y  L  A+   ++
Sbjct: 1   MIRSRVSPNVYTYNILIRGFCSVGELQKGLGCFGEMERNGCLPNVVTYNTLIDAY--CKM 58

Query: 216 YTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSKSYVLA 275
             + E +   L KSM+                 +KG             PN+   SY + 
Sbjct: 59  GRIDEAF--GLLKSMS-----------------SKGMQ-----------PNL--ISYNVI 86

Query: 276 IEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGC 335
           I    R   +  A E+  EM           YN++++ YCK G   +A  +  EM  NG 
Sbjct: 87  INGLCREGSMKEAWEILEEMGYKGFTPDEVTYNTLLNGYCKEGNFHQALVIHAEMVRNGV 146

Query: 336 KPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKG 395
            P+ +TY  L     K+       + L   M+     ++R   P   T  ++I+ F+ +G
Sbjct: 147 SPSVVTYTALINSMCKA-------RNLNRAMEFFDQMRIRGLRPNERTYTTLIDGFSRQG 199

Query: 396 DVGNAENLFEELKKANYTKYTFVYNTLIKAY-VKAKINDP-NLLRRMILGGARPDAETYS 453
            +  A  +  E+ ++ ++     YN  I  + V  ++ +   +++ M+  G  PD  +YS
Sbjct: 200 LLNEAYRILNEMTESGFSPSVVTYNAFIHGHCVLERMEEALGVVQEMVEKGLAPDVVSYS 259

Query: 454 LL 455
            +
Sbjct: 260 TI 261



 Score = 60.8 bits (146), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 92/427 (21%), Positives = 162/427 (37%), Gaps = 95/427 (22%)

Query: 94  NELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNIL 153
           N + YN ++     +G +K + E +++M   G +   + +N L+      G       I 
Sbjct: 79  NLISYNVIINGLCREGSMKEAWEILEEMGYKGFTPDEVTYNTLLNGYCKEGNFHQALVIH 138

Query: 154 RQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVA 213
            +M  + V+P V T+  L+       N+   M+ +  M+   + PNE +Y  L      +
Sbjct: 139 AEMVRNGVSPSVVTYTALINSMCKARNLNRAMEFFDQMRIRGLRPNERTYTTLIDG--FS 196

Query: 214 RLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQEL------PNV 267
           R   + E Y    E + +G + S +     ++G+    + +E     VQE+      P+V
Sbjct: 197 RQGLLNEAYRILNEMTESGFSPSVVTYNAFIHGHCVLER-MEEALGVVQEMVEKGLAPDV 255

Query: 268 RSKSYVLAIEAFGRIAQVSRAEELWLEM----------------QSVKQLKATEQ----- 306
              SY   I  F R  ++ RA ++  EM                Q + +++   +     
Sbjct: 256 --VSYSTIISGFCRKGELDRAFQMKQEMVEKGVSPDAVTYSSLIQGLCEMRRLTEACDLS 313

Query: 307 --------------YNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKS 352
                         Y ++I+ YC  G ++KA  L  EM   G  P+A+TY  L  G  K 
Sbjct: 314 QEMLDMGLPPDEFTYTTLINAYCVEGDLNKALHLHDEMIHKGFLPDAVTYSVLINGLNKQ 373

Query: 353 NLVEEGFKALELGMKLITTKKVRSSTPW-----------LETTLSIIEIFAEKGDVGNAE 401
               E  + L    KLI  + V S   +            ++ +++I+ F  KG +  A+
Sbjct: 374 ARTREAKRLL---FKLIYEESVPSDVTYDTLIENCSNIEFKSVVALIKGFCMKGLMHEAD 430

Query: 402 NLFEELKKANYTKYTFVYN-----------------------------------TLIKAY 426
            +FE + + N+     VYN                                   TLIKA 
Sbjct: 431 RVFESMVERNHKPGEAVYNVIIHGHCRGGNLPKAFNLYKEMIHSGFVPHTVTVITLIKAL 490

Query: 427 VKAKIND 433
            K  +N+
Sbjct: 491 FKEGMNE 497



 Score = 45.1 bits (105), Expect = 0.075,   Method: Compositional matrix adjust.
 Identities = 59/315 (18%), Positives = 114/315 (36%), Gaps = 51/315 (16%)

Query: 94  NELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNIL 153
           NE  Y  L+     +G++  +   + +M   G S S + +N  I  +    R +    ++
Sbjct: 184 NERTYTTLIDGFSRQGLLNEAYRILNEMTESGFSPSVVTYNAFIHGHCVLERMEEALGVV 243

Query: 154 RQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHA-V 212
           ++M    +AP V ++  ++        ++   ++  +M    V P+ V+Y  L      +
Sbjct: 244 QEMVEKGLAPDVVSYSTIISGFCRKGELDRAFQMKQEMVEKGVSPDAVTYSSLIQGLCEM 303

Query: 213 ARLYTVAETYVEALEKSMTGNNWS----------------------------------TL 238
            RL    +   E L+  +  + ++                                  T 
Sbjct: 304 RRLTEACDLSQEMLDMGLPPDEFTYTTLINAYCVEGDLNKALHLHDEMIHKGFLPDAVTY 363

Query: 239 DVLIILYGYLAKGKDLERIW----------------ATVQELPNVRSKSYVLAIEAFGRI 282
            VLI      A+ ++ +R+                   ++   N+  KS V  I+ F   
Sbjct: 364 SVLINGLNKQARTREAKRLLFKLIYEESVPSDVTYDTLIENCSNIEFKSVVALIKGFCMK 423

Query: 283 AQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITY 342
             +  A+ ++  M           YN +I  +C+ G + KA  L KEM  +G  P+ +T 
Sbjct: 424 GLMHEADRVFESMVERNHKPGEAVYNVIIHGHCRGGNLPKAFNLYKEMIHSGFVPHTVTV 483

Query: 343 RHLALGCFKSNLVEE 357
             L    FK  + EE
Sbjct: 484 ITLIKALFKEGMNEE 498


>gi|147828617|emb|CAN73046.1| hypothetical protein VITISV_008668 [Vitis vinifera]
          Length = 477

 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 79/335 (23%), Positives = 142/335 (42%), Gaps = 19/335 (5%)

Query: 126 HSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLM 185
           H    L+ +RL+    S    +    +L +MK +K       F  + +     H     +
Sbjct: 50  HQTFSLMISRLV----SANHFRLAEELLCRMKEEKCNITEDIFLSICRAYGRVHKPLDAV 105

Query: 186 KVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILY 245
           +V+  MK  E EP++ SY  +           +A  +   + +     + ++L+VLI   
Sbjct: 106 RVFRKMKEYECEPSQKSYITVFAILVGENQLKLALRFYRYMREMGIPPSVASLNVLI--K 163

Query: 246 GYLAKGKDLERIWATVQELPN----VRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQL 301
                   ++      +E+PN      S +Y   I    R+ ++  A+EL+ EM++    
Sbjct: 164 ALCKNSGTMDAALRIFREMPNRGCPPHSYTYGTLIXGLCRLGKIGEAKELFKEMETKACS 223

Query: 302 KATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKA 361
                Y S+I   C++  +D A  LL+EM+  G KPN  TY  L  G  KS       +A
Sbjct: 224 PTVVTYXSLIHGLCQSKDLDSAIRLLEEMASKGIKPNVFTYSSLMDGHCKSGCSS---RA 280

Query: 362 LELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNT 421
           LEL   +++    R   P + T  +++    ++G +  A  + + +K         +Y  
Sbjct: 281 LELLDMMVS----RRHLPNMITYSTLVHGLCKEGKLQEAVEILDRMKLQGLRPDAGLYGK 336

Query: 422 LIKAYVK-AKIND-PNLLRRMILGGARPDAETYSL 454
           +I  +    K ++  N L  M+LGG  P+  T+SL
Sbjct: 337 IISGFCDICKFHEAANFLDEMVLGGISPNRLTWSL 371



 Score = 43.1 bits (100), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 50/282 (17%), Positives = 107/282 (37%), Gaps = 46/282 (16%)

Query: 105 CLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPH 164
           C + G +  +L   ++M   G       +  LI      G+      + ++M+    +P 
Sbjct: 166 CKNSGTMDAALRIFREMPNRGCPPHSYTYGTLIXGLCRLGKIGEAKELFKEMETKACSPT 225

Query: 165 VSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVE 224
           V T+  L+       +++  +++  +M    ++PN  +Y  L   H  +   + A   ++
Sbjct: 226 VVTYXSLIHGLCQSKDLDSAIRLLEEMASKGIKPNVFTYSSLMDGHCKSGCSSRALELLD 285

Query: 225 ALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQ-ELPNVRSKS--YVLAIEAFGR 281
            +       N  T   L+  +G   +GK  E +    + +L  +R  +  Y   I  F  
Sbjct: 286 MMVSRRHLPNMITYSTLV--HGLCKEGKLQEAVEILDRMKLQGLRPDAGLYGKIISGFCD 343

Query: 282 IAQV-----------------------------------------SRAEELWLEMQSVKQ 300
           I +                                          +RA +L+L M++   
Sbjct: 344 ICKFHEAANFLDEMVLGGISPNRLTWSLHVRIHNIVVQGLCTEHPNRAFQLYLSMRTRGI 403

Query: 301 LKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITY 342
               + ++S+++ +C  G + KA+ L+ EM ++GC P+  T+
Sbjct: 404 SIDAKTFDSLVNYFCNKGDLHKAAHLVDEMVLDGCIPDEXTW 445


>gi|125590524|gb|EAZ30874.1| hypothetical protein OsJ_14948 [Oryza sativa Japonica Group]
          Length = 414

 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 71/255 (27%), Positives = 116/255 (45%), Gaps = 10/255 (3%)

Query: 109 GVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVA-PHVST 167
           G ++ +LE +++M   G S   +  N L+              +LR+++ D V  P+V T
Sbjct: 96  GQVQKALELVERMNEFGCSPDTVTHNILVDGLCRTNEVSRGHEVLRRLQRDGVCMPNVVT 155

Query: 168 FHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHA-VARLYTVAETYVEAL 226
           F  ++        +E  M VY+DM  S + PN V+Y +L   +  V  L +  E Y + +
Sbjct: 156 FTSVISGYCKAGKLEDAMAVYNDMVASGIMPNTVTYNVLINGYGKVGDLGSAVEVY-QQM 214

Query: 227 EKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQE---LPNVRSKSYVLAIEAFGRIA 283
            +     +  T   LI  Y    +  D  RIW+ + +    PNV + S +  I +  +  
Sbjct: 215 TRLRCPPDVVTFSSLIDGYCRCGQLDDALRIWSDMAQHRIQPNVYTFSII--IHSLCKQN 272

Query: 284 QVSRAEELWLEMQSVKQLKATE-QYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITY 342
           +   A  L  E+     +      YN VI V CK G +D+A+ + K M   GC+P+  TY
Sbjct: 273 RSDEAIGLLNELNLRPDIAPQAFIYNPVIDVLCKCGKVDEANLIRKGMEEKGCRPDKYTY 332

Query: 343 RHLALG-CFKSNLVE 356
             L +G C KS + E
Sbjct: 333 TILIIGYCMKSRISE 347



 Score = 65.1 bits (157), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 73/362 (20%), Positives = 153/362 (42%), Gaps = 23/362 (6%)

Query: 101 LVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADK 160
           LV +C    ++  S   + K    G  +    +N+L+      GR   +  +  +   D+
Sbjct: 17  LVSSCTCANLLDASATLLSKASEFGCRVEAYAYNKLMSSLIGRGRVHDVVALFERWIQDR 76

Query: 161 V-APHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVA 219
           V +P V +F++++K       ++  +++   M      P+ V++ IL          +  
Sbjct: 77  VYSPDVWSFNVVIKGVCRVGQVQKALELVERMNEFGCSPDTVTHNILVDGLCRTNEVSRG 136

Query: 220 ETYVEALEKS-MTGNNWSTLDVLIILYGYLAKGKDLERIWATVQEL------PNVRSKSY 272
              +  L++  +   N  T   +I   GY   GK LE   A   ++      PN  + +Y
Sbjct: 137 HEVLRRLQRDGVCMPNVVTFTSVI--SGYCKAGK-LEDAMAVYNDMVASGIMPN--TVTY 191

Query: 273 VLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSM 332
            + I  +G++  +  A E++ +M  ++       ++S+I  YC+ G +D A  +  +M+ 
Sbjct: 192 NVLINGYGKVGDLGSAVEVYQQMTRLRCPPDVVTFSSLIDGYCRCGQLDDALRIWSDMAQ 251

Query: 333 NGCKPNAITYRHLALGCFKSNLVEEGFKAL-ELGMKLITTKKVRSSTPWLETTLSIIEIF 391
           +  +PN  T+  +     K N  +E    L EL ++     +     P       +I++ 
Sbjct: 252 HRIQPNVYTFSIIIHSLCKQNRSDEAIGLLNELNLRPDIAPQAFIYNP-------VIDVL 304

Query: 392 AEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAY-VKAKINDPNL-LRRMILGGARPDA 449
            + G V  A  + + +++       + Y  LI  Y +K++I++  +    M+  G  PD+
Sbjct: 305 CKCGKVDEANLIRKGMEEKGCRPDKYTYTILIIGYCMKSRISEAIMFFHEMVEAGCSPDS 364

Query: 450 ET 451
            T
Sbjct: 365 IT 366



 Score = 47.4 bits (111), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 64/343 (18%), Positives = 136/343 (39%), Gaps = 63/343 (18%)

Query: 29  IFHSINRLRKLQLNKRALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQGEKLF--- 85
           +   + R+ ++Q   +ALE++E  + E    P  + ++ L++   + + +S+G ++    
Sbjct: 88  VIKGVCRVGQVQ---KALELVER-MNEFGCSPDTVTHNILVDGLCRTNEVSRGHEVLRRL 143

Query: 86  ----CCIPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNS 141
                C+P    N + + +++      G ++ ++     M   G   + + +N LI    
Sbjct: 144 QRDGVCMP----NVVTFTSVISGYCKAGKLEDAMAVYNDMVASGIMPNTVTYNVLINGYG 199

Query: 142 SPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEV 201
             G   +   + +QM   +  P V TF  L+        ++  ++++SDM +  ++PN  
Sbjct: 200 KVGDLGSAVEVYQQMTRLRCPPDVVTFSSLIDGYCRCGQLDDALRIWSDMAQHRIQPN-- 257

Query: 202 SYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATV 261
                        +YT +                      II++    + +  E I   +
Sbjct: 258 -------------VYTFS----------------------IIIHSLCKQNRSDEAI-GLL 281

Query: 262 QEL---PNVRSKSYVL--AIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCK 316
            EL   P++  ++++    I+   +  +V  A  +   M+          Y  +I  YC 
Sbjct: 282 NELNLRPDIAPQAFIYNPVIDVLCKCGKVDEANLIRKGMEEKGCRPDKYTYTILIIGYCM 341

Query: 317 NGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGF 359
              I +A     EM   GC P++IT     + CF S L++ G 
Sbjct: 342 KSRISEAIMFFHEMVEAGCSPDSIT-----VNCFISCLLKAGM 379


>gi|356544498|ref|XP_003540687.1| PREDICTED: pentatricopeptide repeat-containing protein At2g15630,
           mitochondrial-like [Glycine max]
          Length = 623

 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 81/367 (22%), Positives = 156/367 (42%), Gaps = 20/367 (5%)

Query: 94  NELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNIL 153
           N + YN ++     +G  + +    + M+  G       +N  I      GR +    ++
Sbjct: 250 NVVTYNTIIHGHCLRGKFQRARVIFQTMKDKGLEPDCYTYNSFISGLCKEGRLEEASGLI 309

Query: 154 RQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVA 213
            +M    + P+  T++ L+    N  +++       +M    +  + V+Y +   A  + 
Sbjct: 310 CKMLEGGLVPNAVTYNALIDGYCNKGDLDKAYAYRDEMISKGIMASLVTYNLFIHALFME 369

Query: 214 RLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQEL------PNV 267
                A+  ++ + +     +  T ++LI   GY   G D +R +  + E+      P +
Sbjct: 370 GRMGDADNMIKEMREKGMMPDAVTHNILI--NGYCRCG-DAKRAFGLLDEMVGKGIQPTL 426

Query: 268 RSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLL 327
              +Y   I   G+  ++  A+ L+ ++Q    L     +N++I  +C NG ID+A  LL
Sbjct: 427 --VTYTSLIYVLGKRNRMKEADALFSKIQQEGLLPDIIVFNALIDGHCANGNIDRAFQLL 484

Query: 328 KEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSI 387
           KEM      P+ ITY  L  G  +   VEE         +L+   K R   P   +  ++
Sbjct: 485 KEMDNMKVLPDEITYNTLMQGYCREGKVEEA-------RQLLDEMKRRGIKPDHISYNTL 537

Query: 388 IEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKIND--PNLLRRMILGGA 445
           I  ++++GD+ +A  + +E+    +      YN LI+   K +  +    LL+ M+  G 
Sbjct: 538 ISGYSKRGDMKDAFRVRDEMMTTGFDPTILTYNALIQGLCKNQEGEHAEELLKEMVSKGI 597

Query: 446 RPDAETY 452
            PD  TY
Sbjct: 598 TPDDSTY 604



 Score = 67.4 bits (163), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 77/383 (20%), Positives = 157/383 (40%), Gaps = 49/383 (12%)

Query: 48  VMEWVIRERPYRPKELDYSYLLEFTIKNHGISQGEKLFCCIPKD--YQNELLYNNLVIAC 105
           V+   ++++   P    Y+  +    K   + +   L C + +     N + YN L+   
Sbjct: 272 VIFQTMKDKGLEPDCYTYNSFISGLCKEGRLEEASGLICKMLEGGLVPNAVTYNALIDGY 331

Query: 106 LDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHV 165
            +KG +  +  Y  +M   G   S + +N  I      GR     N++++M+   + P  
Sbjct: 332 CNKGDLDKAYAYRDEMISKGIMASLVTYNLFIHALFMEGRMGDADNMIKEMREKGMMPDA 391

Query: 166 STFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEA 225
            T +IL+       + +    +  +M    ++P  V+Y                      
Sbjct: 392 VTHNILINGYCRCGDAKRAFGLLDEMVGKGIQPTLVTYT--------------------- 430

Query: 226 LEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQE---LPNVRSKSYVLAIEAFGRI 282
                          LI + G   + K+ + +++ +Q+   LP++    +   I+     
Sbjct: 431 --------------SLIYVLGKRNRMKEADALFSKIQQEGLLPDI--IVFNALIDGHCAN 474

Query: 283 AQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITY 342
             + RA +L  EM ++K L     YN+++  YC+ G +++A  LL EM   G KP+ I+Y
Sbjct: 475 GNIDRAFQLLKEMDNMKVLPDEITYNTLMQGYCREGKVEEARQLLDEMKRRGIKPDHISY 534

Query: 343 RHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAEN 402
             L  G  K   +++ F+  +   +++TT       P + T  ++I+   +  +  +AE 
Sbjct: 535 NTLISGYSKRGDMKDAFRVRD---EMMTT----GFDPTILTYNALIQGLCKNQEGEHAEE 587

Query: 403 LFEELKKANYTKYTFVYNTLIKA 425
           L +E+     T     Y ++I+A
Sbjct: 588 LLKEMVSKGITPDDSTYLSIIEA 610



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 68/328 (20%), Positives = 128/328 (39%), Gaps = 47/328 (14%)

Query: 167 TFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEAL 226
           TF+I++ +   +  ++   +    M+   V+PN V+Y  +   H +   +  A    + +
Sbjct: 218 TFNIMINVLCKEGKLKKAKEFIGHMETLGVKPNVVTYNTIIHGHCLRGKFQRARVIFQTM 277

Query: 227 EKSMTGNNWSTLDVLI---------------------------------ILYGYLAKGKD 253
           +      +  T +  I                                 ++ GY  KG D
Sbjct: 278 KDKGLEPDCYTYNSFISGLCKEGRLEEASGLICKMLEGGLVPNAVTYNALIDGYCNKG-D 336

Query: 254 LERIWATVQELPN----VRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNS 309
           L++ +A   E+ +        +Y L I A     ++  A+ +  EM+    +     +N 
Sbjct: 337 LDKAYAYRDEMISKGIMASLVTYNLFIHALFMEGRMGDADNMIKEMREKGMMPDAVTHNI 396

Query: 310 VISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLI 369
           +I+ YC+ G   +A GLL EM   G +P  +TY  L     K N ++E          L 
Sbjct: 397 LINGYCRCGDAKRAFGLLDEMVGKGIQPTLVTYTSLIYVLGKRNRMKE-------ADALF 449

Query: 370 TTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVK- 428
           +  +     P +    ++I+     G++  A  L +E+           YNTL++ Y + 
Sbjct: 450 SKIQQEGLLPDIIVFNALIDGHCANGNIDRAFQLLKEMDNMKVLPDEITYNTLMQGYCRE 509

Query: 429 AKINDP-NLLRRMILGGARPDAETYSLL 455
            K+ +   LL  M   G +PD  +Y+ L
Sbjct: 510 GKVEEARQLLDEMKRRGIKPDHISYNTL 537



 Score = 56.2 bits (134), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 61/253 (24%), Positives = 106/253 (41%), Gaps = 39/253 (15%)

Query: 238 LDVLIILYGYLAKGKDLERIWATVQE---LPNVRSKSYVLAIEAFGRIAQVSRAEELWLE 294
            D+L+  Y  L K  +    +  ++E   +PN+ + + +L++  F ++ +   A  L+ E
Sbjct: 149 FDLLVRAYCELKKPNEALECFYLIKEKGFVPNIETCNQMLSL--FLKLNRTQMAWVLYAE 206

Query: 295 MQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALG-C---- 349
           M  +    +   +N +I+V CK G + KA   +  M   G KPN +TY  +  G C    
Sbjct: 207 MFRMNIRSSLYTFNIMINVLCKEGKLKKAKEFIGHMETLGVKPNVVTYNTIIHGHCLRGK 266

Query: 350 -------------------------FKSNLVEEGFKALELGMKLITTKKVRSSTPWLETT 384
                                    F S L +EG   LE    LI         P   T 
Sbjct: 267 FQRARVIFQTMKDKGLEPDCYTYNSFISGLCKEG--RLEEASGLICKMLEGGLVPNAVTY 324

Query: 385 LSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKA-YVKAKINDP-NLLRRMIL 442
            ++I+ +  KGD+  A    +E+           YN  I A +++ ++ D  N+++ M  
Sbjct: 325 NALIDGYCNKGDLDKAYAYRDEMISKGIMASLVTYNLFIHALFMEGRMGDADNMIKEMRE 384

Query: 443 GGARPDAETYSLL 455
            G  PDA T+++L
Sbjct: 385 KGMMPDAVTHNIL 397


>gi|296083087|emb|CBI22491.3| unnamed protein product [Vitis vinifera]
          Length = 548

 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 74/348 (21%), Positives = 150/348 (43%), Gaps = 16/348 (4%)

Query: 114 SLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMK 173
           +LE   +M   G       +  L+      G+ K    I  +M+ +   P++ TF+ L+K
Sbjct: 88  ALELKNQMVEKGIKPDVFTYTTLLSGFEKAGKDKAAVQIFEEMRNEGCKPNICTFNALIK 147

Query: 174 IEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGN 233
           +  N      +MKV+ D+K  +  P+ V++  L +      + +      + ++++    
Sbjct: 148 MHGNRGKFTEMMKVFEDIKTFQCSPDIVTWNTLLSVFGQNGMDSEVSGVFKEMKRAGFVP 207

Query: 234 NWSTLDVLIILYGYLAKGKDLERIWATVQEL---PNVRSKSYVLAIEAFGRIAQVSRAEE 290
              T + LI  Y           ++  + E    P++ S + VLA  A  R     ++E+
Sbjct: 208 ERDTFNTLISSYSRCGSFDQAMAVYKRMLEAGVNPDLSSYNAVLA--ALARGGLWKQSEK 265

Query: 291 LWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCF 350
           +  EM+  +       Y S++  Y     I++   L +E+     +P A+  + L L   
Sbjct: 266 VLAEMKDGRCKPNELTYCSLLHAYANGKEIERMCALAEEIYSGIIEPRAVLLKTLVLVNS 325

Query: 351 KSNLVEEGFKA-LELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKK 409
           K +L+ E  +A LEL        + R  +P + T  +++ I+  +  V  A  + + +K+
Sbjct: 326 KCDLLMETERAFLEL--------RQRGFSPDITTLNAMVSIYGRRQMVAKANEILDCMKR 377

Query: 410 ANYTKYTFVYNTLIKAYVKAKI--NDPNLLRRMILGGARPDAETYSLL 455
             +T     YN+L+  Y ++        +LR ++  G RPD  +Y+ +
Sbjct: 378 GGFTPSLTTYNSLMYMYSRSANFERSEEILREILAKGIRPDIISYNTV 425



 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 79/369 (21%), Positives = 157/369 (42%), Gaps = 22/369 (5%)

Query: 94  NELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNIL 153
           N   +N L+    ++G     ++  + ++    S   + +N L+ +    G    +  + 
Sbjct: 138 NICTFNALIKMHGNRGKFTEMMKVFEDIKTFQCSPDIVTWNTLLSVFGQNGMDSEVSGVF 197

Query: 154 RQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVA 213
           ++MK     P   TF+ L+   +   + +  M VY  M  + V P+  SY  +  A A  
Sbjct: 198 KEMKRAGFVPERDTFNTLISSYSRCGSFDQAMAVYKRMLEAGVNPDLSSYNAVLAALARG 257

Query: 214 RLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPN------- 266
            L+  +E  +  ++      N   L    +L+ Y A GK++ER+ A  +E+ +       
Sbjct: 258 GLWKQSEKVLAEMKDGRCKPN--ELTYCSLLHAY-ANGKEIERMCALAEEIYSGIIEPRA 314

Query: 267 VRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGL 326
           V  K+ VL       + +  RA   +LE++           N+++S+Y +   + KA+ +
Sbjct: 315 VLLKTLVLVNSKCDLLMETERA---FLELRQRGFSPDITTLNAMVSIYGRRQMVAKANEI 371

Query: 327 LKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLS 386
           L  M   G  P+  TY  L     +S      F+  E  ++ I  K +R   P + +  +
Sbjct: 372 LDCMKRGGFTPSLTTYNSLMYMYSRS----ANFERSEEILREILAKGIR---PDIISYNT 424

Query: 387 IIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAK--INDPNLLRRMILGG 444
           +I  +   G + +A  +  E++++        YNT I +Y      +   +++  MI  G
Sbjct: 425 VIYAYCRNGRMRDASRVLSEMRESGPAPDIITYNTFIASYAADSMFVEAIDVVCYMIKHG 484

Query: 445 ARPDAETYS 453
            +P+  TY+
Sbjct: 485 CKPNQSTYN 493



 Score = 52.8 bits (125), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 61/286 (21%), Positives = 113/286 (39%), Gaps = 40/286 (13%)

Query: 98  YNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMK 157
           +N L+ +    G    ++   K+M   G +     +N ++   +  G  K    +L +MK
Sbjct: 212 FNTLISSYSRCGSFDQAMAVYKRMLEAGVNPDLSSYNAVLAALARGGLWKQSEKVLAEMK 271

Query: 158 ADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYT 217
             +  P+  T+  L+   AN   IE +  +  ++    +EP  V    L   ++   L  
Sbjct: 272 DGRCKPNELTYCSLLHAYANGKEIERMCALAEEIYSGIIEPRAVLLKTLVLVNSKCDLLM 331

Query: 218 VAETYVEALEKSMTGNNWSTLDVLIILYG---YLAKGKDLERIWATVQELPNVRSKSYVL 274
             E     L +     + +TL+ ++ +YG    +AK  ++          P++ + + ++
Sbjct: 332 ETERAFLELRQRGFSPDITTLNAMVSIYGRRQMVAKANEILDCMKRGGFTPSLTTYNSLM 391

Query: 275 AIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEM---- 330
            +  + R A   R+EE+  E+ +         YN+VI  YC+NG +  AS +L EM    
Sbjct: 392 YM--YSRSANFERSEEILREILAKGIRPDIISYNTVIYAYCRNGRMRDASRVLSEMRESG 449

Query: 331 ------------------SM-------------NGCKPNAITYRHL 345
                             SM             +GCKPN  TY  +
Sbjct: 450 PAPDIITYNTFIASYAADSMFVEAIDVVCYMIKHGCKPNQSTYNSI 495


>gi|297834714|ref|XP_002885239.1| EMB1270 [Arabidopsis lyrata subsp. lyrata]
 gi|297331079|gb|EFH61498.1| EMB1270 [Arabidopsis lyrata subsp. lyrata]
          Length = 1429

 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 98/430 (22%), Positives = 172/430 (40%), Gaps = 63/430 (14%)

Query: 43  KRALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQGEKLFC-CIPKDYQNELLYNNL 101
           +RALEV EW+     + P     + +L    + +  S   ++F    P       +YN +
Sbjct: 172 QRALEVFEWLNLRHWHSPNARMVAAILGVLGRWNQESLAVEIFTRAEPTVGDRVQVYNAM 231

Query: 102 VIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNI----LRQMK 157
           +      G    + E +  MR  G     + FN LI  N+        PN+    L  ++
Sbjct: 232 MGVYSRSGKFSKAQELLDAMRQRGCVPDLISFNTLI--NARLKSGGLTPNLVVELLDMVR 289

Query: 158 ADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYT 217
              + P   T++ L+   + D N+EG +KV+ DM+    +P+  +Y              
Sbjct: 290 NSGLRPDAITYNTLLSACSRDSNLEGAVKVFEDMEAHRCQPDLWTY-------------- 335

Query: 218 VAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSK--SYVLA 275
                                + +I +YG      + ER++  + EL        +Y   
Sbjct: 336 ---------------------NAMISVYGRCGLAAEAERLFIEL-ELKGFSPDAVTYNSL 373

Query: 276 IEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEM-SMNG 334
           + AF R     + +E++ +MQ +   K    YN++I +Y K G +D A  L K+M  ++G
Sbjct: 374 LYAFARERNTEKVKEVYQQMQKMGFGKDEMTYNTIIHMYGKQGQLDLALQLYKDMKGLSG 433

Query: 335 CKPNAITYRHLALGCFKSNLVEEGF----KALELGMKLITTKKVRSSTPWLETTLSIIEI 390
             P+AITY  L     K+N   E      + L++G+K           P L+T  ++I  
Sbjct: 434 RNPDAITYTVLIDSLGKANRSVEAAALMSEMLDVGIK-----------PTLQTYSALICG 482

Query: 391 FAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKINDPN--LLRRMILGGARPD 448
           +A+ G    AE+ F  + ++        Y+ ++   ++         L R MI  G  P 
Sbjct: 483 YAKAGKREEAEDTFSCMLRSGTKPDNLAYSVMLDVLLRGNETRKAWVLYRDMISDGHTPS 542

Query: 449 AETYSLLKLA 458
              Y L+ L 
Sbjct: 543 HSLYELMILG 552



 Score = 47.8 bits (112), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 66/317 (20%), Positives = 124/317 (39%), Gaps = 59/317 (18%)

Query: 187  VYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYG 246
            V  ++++S   P+  ++  L +A+A    Y  A      + +   G + +   +  +L+ 
Sbjct: 774  VVGNLRQSGRTPDLKTWNSLMSAYAECGCYERARAIFNTMMRD--GPSPTVESINKLLHA 831

Query: 247  YLAKGKDLERIWATVQELPN----VRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLK 302
                G+ LE ++  V+EL +    +   S +L ++AF R   +    +++  M++   L 
Sbjct: 832  LCVDGR-LEELYVVVEELQDMGFKISKSSILLMLDAFARAGNIFEVNKIYSSMKAAGYLP 890

Query: 303  ATEQYNSVISVYCKNGFIDKASGLLKEM-------------SM----------------- 332
                Y  +I + CK   +  A  ++ EM             SM                 
Sbjct: 891  TIRLYRMMIELLCKGKRVRDAEIMVSEMEEANFKVELAIWNSMLKMYTVIEDYKKTVQVY 950

Query: 333  -----NGCKPNAITYRHLALGCFKSNLVEEGFKALE----LGMKLITTKKVRSSTPWLET 383
                 +G +P+  TY  L +   +    EEG+  ++    LG+            P L+T
Sbjct: 951  QRIKESGLEPDETTYNTLIIMYCRDRRPEEGYSLMQQMRNLGLD-----------PKLDT 999

Query: 384  TLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKINDP--NLLRRMI 441
              S+I  F ++  +  AE LFEEL           Y+T++K    +  +     LL+ M 
Sbjct: 1000 YKSLISAFGKQKCLEQAEQLFEELLSKGLKLDRSFYHTMMKISRDSGSDSKAEKLLQMMK 1059

Query: 442  LGGARPDAETYSLLKLA 458
              G  P   T  LL ++
Sbjct: 1060 NAGIEPTLATMHLLMVS 1076



 Score = 45.1 bits (105), Expect = 0.089,   Method: Compositional matrix adjust.
 Identities = 49/217 (22%), Positives = 90/217 (41%), Gaps = 30/217 (13%)

Query: 269 SKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLK 328
           S  Y   IEA+G++    +AE +   ++   +    + +NS++S Y + G  ++A  +  
Sbjct: 752 SPMYTDIIEAYGKLKLWQKAESVVGNLRQSGRTPDLKTWNSLMSAYAECGCYERARAIFN 811

Query: 329 EMSMNGCKPNAITYRHLALG-CFKSNL------VEE----GFK-----------ALELGM 366
            M  +G  P   +   L    C    L      VEE    GFK           A     
Sbjct: 812 TMMRDGPSPTVESINKLLHALCVDGRLEELYVVVEELQDMGFKISKSSILLMLDAFARAG 871

Query: 367 KLITTKKVRSST------PWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYN 420
            +    K+ SS       P +     +IE+  +   V +AE +  E+++AN+     ++N
Sbjct: 872 NIFEVNKIYSSMKAAGYLPTIRLYRMMIELLCKGKRVRDAEIMVSEMEEANFKVELAIWN 931

Query: 421 TLIKAY--VKAKINDPNLLRRMILGGARPDAETYSLL 455
           +++K Y  ++       + +R+   G  PD  TY+ L
Sbjct: 932 SMLKMYTVIEDYKKTVQVYQRIKESGLEPDETTYNTL 968


>gi|302775294|ref|XP_002971064.1| hypothetical protein SELMODRAFT_95253 [Selaginella moellendorffii]
 gi|300161046|gb|EFJ27662.1| hypothetical protein SELMODRAFT_95253 [Selaginella moellendorffii]
          Length = 814

 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 99/460 (21%), Positives = 182/460 (39%), Gaps = 35/460 (7%)

Query: 14  FQSWMREGF-PVHRGEIFHSINRLRKLQLNKRALEVMEWVIRERPYRPKELDYSYLLEFT 72
           F   M  GF P  R      +  L K +  K A EV    + +  + P  + Y+ +++  
Sbjct: 212 FHEMMAMGFVPPDRALHTAMVRTLLKAKRVKEAREVFGQ-MEKCGFPPDAIAYNTMIDGL 270

Query: 73  IKNHGISQGEKLF------CCIPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGH 126
            K     +  K+        C+P +    +L N+L  A    G ++ + E  + M   G 
Sbjct: 271 AKAGHAQEALKVLDNMLAKACVPTEVTYGILVNSLCKA----GTLERAEELFRVMAASGF 326

Query: 127 SISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMK 186
             + +++  LI   +  GR K   ++  +M      P V T  +++       N E   K
Sbjct: 327 RPNSVIYTSLIHGFAKSGRMKEACSLFDEMVEAGYRPDVITHTVMIDGLCKSGNFEQAAK 386

Query: 187 VYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNW--STLDVLIIL 244
            + +M R   +PN V+Y  +     ++++  VA  +   + K M  +     ++  + +L
Sbjct: 387 SFEEMMRGGCKPNVVTYTTII--QGLSKIGRVANAF--RIMKGMIAHGCFPDSVTYICLL 442

Query: 245 YGYLAKGKDLERIWATVQELPNVRSKS----YVLAIEAFGRIAQVSRA-EELWLEMQSVK 299
            G+   G+ L+     + EL    S      Y   +        V +  ++L+ + ++  
Sbjct: 443 DGFCKLGR-LDEAAQLLDELDKCSSSPNLQLYSSLVNGLCDGGSVEKTLDDLFEQSKAAA 501

Query: 300 QLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKS--NLVEE 357
           +        S+I   CK G +D+A  + + M   GCKP+A TY  L  G  +S  N VE 
Sbjct: 502 ETLDPGLCCSIIVGLCKTGRLDEACRIFQRMVSEGCKPDATTYNILINGLCRSRENRVER 561

Query: 358 GFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTF 417
            F  L    K+       + TP     + + +I    G+V  A  + EE     +     
Sbjct: 562 AFALLHDLEKVGYLPDAVTYTPL---CIGLCKI----GEVDRAVKMLEEASSRGWNADVV 614

Query: 418 VYNTLIKAYV-KAKINDP-NLLRRMILGGARPDAETYSLL 455
            Y  L      + +++   +L + M+  G  PDA  Y  +
Sbjct: 615 AYTALCTGLCYQGQVDRAVSLFQEMVRQGGAPDAAAYCCI 654



 Score = 72.0 bits (175), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 104/477 (21%), Positives = 183/477 (38%), Gaps = 52/477 (10%)

Query: 23  PVHRGEIF--HSINRLRKLQLNKRALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQ 80
           PVH G++   H    LR L++   A+    W   +  ++     Y+ L+   +     SQ
Sbjct: 79  PVH-GQVLGSHVAAVLRSLKVTGTAISFFRWAGEQAGFQHDVFTYNCLMNLLVAEKNYSQ 137

Query: 81  G-----EKLFCCI-PKDYQNELLYNNLV-IACLDKGVIKLSLEYMKKMRVLGHSISYLVF 133
                 E L   I P  +   +L  +       D  V     E MK+ R      ++L+ 
Sbjct: 138 CYAIHEEMLKAGIAPNTFSFNILIRSFARTRRADDAVT--CFEIMKRKRCKPDLHTFLI- 194

Query: 134 NRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILM-KIEANDHNIEGLMKVYSDMK 192
             L+      G  +    +  +M A    P     H  M +       ++   +V+  M+
Sbjct: 195 --LVDCLCKAGMDEKAFEVFHEMMAMGFVPPDRALHTAMVRTLLKAKRVKEAREVFGQME 252

Query: 193 RSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLI---ILYGYLA 249
           +    P+ ++Y  +    A A     A   ++ +          T  +L+      G L 
Sbjct: 253 KCGFPPDAIAYNTMIDGLAKAGHAQEALKVLDNMLAKACVPTEVTYGILVNSLCKAGTLE 312

Query: 250 KGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNS 309
           + ++L R+ A     PN  S  Y   I  F +  ++  A  L+ EM           +  
Sbjct: 313 RAEELFRVMAASGFRPN--SVIYTSLIHGFAKSGRMKEACSLFDEMVEAGYRPDVITHTV 370

Query: 310 VISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRH---------------------LALG 348
           +I   CK+G  ++A+   +EM   GCKPN +TY                       +A G
Sbjct: 371 MIDGLCKSGNFEQAAKSFEEMMRGGCKPNVVTYTTIIQGLSKIGRVANAFRIMKGMIAHG 430

Query: 349 CFKSNL----VEEGF---KALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNA- 400
           CF  ++    + +GF     L+   +L+      SS+P L+   S++    + G V    
Sbjct: 431 CFPDSVTYICLLDGFCKLGRLDEAAQLLDELDKCSSSPNLQLYSSLVNGLCDGGSVEKTL 490

Query: 401 ENLFEELKKANYTKYTFVYNTLIKAYVKAKINDP--NLLRRMILGGARPDAETYSLL 455
           ++LFE+ K A  T    +  ++I    K    D    + +RM+  G +PDA TY++L
Sbjct: 491 DDLFEQSKAAAETLDPGLCCSIIVGLCKTGRLDEACRIFQRMVSEGCKPDATTYNIL 547



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 85/418 (20%), Positives = 160/418 (38%), Gaps = 32/418 (7%)

Query: 55  ERPYRPKELDYSYLLEFTIKNHGISQGEKLF------CCIPKDYQNELLYNNLVIACLDK 108
           E  YRP  + ++ +++   K+    Q  K F       C P    N + Y  ++      
Sbjct: 358 EAGYRPDVITHTVMIDGLCKSGNFEQAAKSFEEMMRGGCKP----NVVTYTTIIQGLSKI 413

Query: 109 GVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTF 168
           G +  +   MK M   G     + +  L+      GR      +L ++     +P++  +
Sbjct: 414 GRVANAFRIMKGMIAHGCFPDSVTYICLLDGFCKLGRLDEAAQLLDELDKCSSSPNLQLY 473

Query: 169 HILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYC--ILATAHAVARLYTVAETYVEAL 226
             L+    +  ++E  +    +  ++  E  +   C  I+       RL      +   +
Sbjct: 474 SSLVNGLCDGGSVEKTLDDLFEQSKAAAETLDPGLCCSIIVGLCKTGRLDEACRIFQRMV 533

Query: 227 EKSMTGNNWSTLDVLIILYGYLAKGKD--LERIWATVQELPNV----RSKSYVLAIEAFG 280
            +     + +T ++LI     L + ++  +ER +A + +L  V     + +Y        
Sbjct: 534 SEGCK-PDATTYNILI---NGLCRSRENRVERAFALLHDLEKVGYLPDAVTYTPLCIGLC 589

Query: 281 RIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAI 340
           +I +V RA ++  E  S         Y ++ +  C  G +D+A  L +EM   G  P+A 
Sbjct: 590 KIGEVDRAVKMLEEASSRGWNADVVAYTALCTGLCYQGQVDRAVSLFQEMVRQGGAPDAA 649

Query: 341 TYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNA 400
            Y      C  + L++   K LE   K       +   P + T  ++++     G+V  A
Sbjct: 650 AY-----CCIINGLIK--VKKLEDACKFFDEMIGKGQKPTVATYTALVQALCHAGNVDEA 702

Query: 401 ENLFEE-LKKANYTKYTFVYNTLIKAYVKAKINDP--NLLRRMILGGARPDAETYSLL 455
            + FE  L +        +Y+ LI  + KA   D    L   MI  G  P A T + L
Sbjct: 703 FHRFESMLARGELVGSVMIYDALIHGFCKALKVDAALKLFEDMISRGNVPTAVTSASL 760


>gi|147778634|emb|CAN76112.1| hypothetical protein VITISV_005527 [Vitis vinifera]
          Length = 1494

 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 93/423 (21%), Positives = 175/423 (41%), Gaps = 56/423 (13%)

Query: 43  KRALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQGEKLFCCIPKDYQNEL-LYNNL 101
           +RALEV EW+     Y P     + +L    K +  +   ++F        N + +YN +
Sbjct: 201 QRALEVYEWLNLRHWYSPNARMLATILSVLGKANQEALAVEIFARAEAAXGNTVQVYNAM 260

Query: 102 VIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKT--IPNILRQMKAD 159
           +      G      E +  MR  G     + FN LI      G   T     +L +++  
Sbjct: 261 MGVYARTGRFTKVQELLDLMRSRGCEPDLVSFNTLINARLKSGTMVTNLAIELLNEVRRS 320

Query: 160 KVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVA 219
            + P + T++ L+   + + N+E  +KVY+DM     +P+  +Y                
Sbjct: 321 GIQPDIITYNTLISACSRESNLEEAVKVYNDMVAHRCQPDLWTY---------------- 364

Query: 220 ETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQE---LPNVRSKSYVLAI 276
                              + +I +YG     ++  R++  ++    LP+  + +Y   +
Sbjct: 365 -------------------NAMISVYGRCGMSREAGRLFKDLESKGFLPD--AVTYNSLL 403

Query: 277 EAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCK 336
            AF R   V + +E+  +M  +   K    YN++I +Y K G  D A  L  +M ++G  
Sbjct: 404 YAFAREGNVDKVKEICEDMVKMGFGKDEMTYNTIIHMYGKRGQHDLAFQLYSDMKLSGRS 463

Query: 337 PNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGD 396
           P+A+TY  L     K+N+++E  +     M  +    V+   P L T  ++I  +A+ G 
Sbjct: 464 PDAVTYTVLIDSLGKANMIKEAAEV----MSEMLNAXVK---PTLRTFSALICGYAKAGK 516

Query: 397 VGNAENLFEELK----KANYTKYTFVYNTLIKAYVKAKINDPNLLRRMILGGARPDAETY 452
              AE  F+ +     K ++  Y+ + + L++     K     L + M+L   +PD   Y
Sbjct: 517 RVEAEETFDCMLRSGIKPDHLAYSVMLDILLRFNESGKAM--KLYQEMVLHSFKPDHALY 574

Query: 453 SLL 455
            ++
Sbjct: 575 EVM 577



 Score = 47.4 bits (111), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 74/331 (22%), Positives = 127/331 (38%), Gaps = 47/331 (14%)

Query: 132  VFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDM 191
            V+N LI   ++ G  +    I   M  D  +P V + + LM+    D  ++ L  V  ++
Sbjct: 816  VWNALIHAYAASGCYERARAIFNTMMRDGPSPTVDSVNGLMQALIVDGRLDELYVVIQEL 875

Query: 192  KRS--EVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLA 249
            +    ++  + ++  + A AHA   ++ V + Y    +       + T+ +  I+ G LA
Sbjct: 876  QDMGFKISKSSITLMLDAFAHA-GNIFEVKKIY----QGMKAAGYFPTMHLYRIMIGLLA 930

Query: 250  KGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNS 309
            KGK +  + A V E+                 +A       +W               NS
Sbjct: 931  KGKRVRDVEAMVSEM----------------EVAXFKPDLSIW---------------NS 959

Query: 310  VISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLI 369
            V+ +Y   G   K   + + +   G KP+  TY  L L   +    EEG       + L+
Sbjct: 960  VLKLYTGIGDFKKTGQVYQLIQEAGLKPDEDTYNTLILMYCRDRRPEEG-------LSLM 1012

Query: 370  TTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKA 429
               +     P L+T  S+I  F +   V  AE LFE L           Y+ ++K +  +
Sbjct: 1013 HEMRRVGLEPKLDTYKSLISAFGKLQMVEQAEELFEGLLSKECKLDRSFYHIMMKMFRNS 1072

Query: 430  KIND--PNLLRRMILGGARPDAETYSLLKLA 458
              +     LL  M   G  P   T  LL ++
Sbjct: 1073 GNHSKAEKLLGVMKEAGVEPTIATMHLLMVS 1103



 Score = 46.6 bits (109), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 70/338 (20%), Positives = 144/338 (42%), Gaps = 28/338 (8%)

Query: 99   NNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKA 158
            N L+ A +  G +      +++++ +G  IS      ++   +  G    +  I + MKA
Sbjct: 853  NGLMQALIVDGRLDELYVVIQELQDMGFKISKSSITLMLDAFAHAGNIFEVKKIYQGMKA 912

Query: 159  DKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYT- 217
                P +  + I++ + A    +  +  + S+M+ +  +P+      L+  ++V +LYT 
Sbjct: 913  AGYFPTMHLYRIMIGLLAKGKRVRDVEAMVSEMEVAXFKPD------LSIWNSVLKLYTG 966

Query: 218  ------VAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNV---- 267
                    + Y + ++++    +  T + LI++Y    + +  E   + + E+  V    
Sbjct: 967  IGDFKKTGQVY-QLIQEAGLKPDEDTYNTLILMY---CRDRRPEEGLSLMHEMRRVGLEP 1022

Query: 268  RSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLL 327
            +  +Y   I AFG++  V +AEEL+  + S +       Y+ ++ ++  +G   KA  LL
Sbjct: 1023 KLDTYKSLISAFGKLQMVEQAEELFEGLLSKECKLDRSFYHIMMKMFRNSGNHSKAEKLL 1082

Query: 328  KEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSI 387
              M   G +P   T   L +    S   EE  K L+    L       S+ P+     S+
Sbjct: 1083 GVMKEAGVEPTIATMHLLMVSYSGSGQPEEAEKVLD---NLKVEGLPLSTLPY----SSV 1135

Query: 388  IEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKA 425
            I+ + + GD   A     E+KK        ++   ++A
Sbjct: 1136 IDAYLKNGDHNVAIQKLMEMKKDGLEPDHRIWTCFVRA 1173



 Score = 40.4 bits (93), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 38/185 (20%), Positives = 83/185 (44%), Gaps = 10/185 (5%)

Query: 276 IEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGC 335
           IEA+G++    +AE L   ++    +   + +N++I  Y  +G  ++A  +   M  +G 
Sbjct: 786 IEAYGKLKLWQKAESLVGSLRQKCTMVDRKVWNALIHAYAASGCYERARAIFNTMMRDGP 845

Query: 336 KPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKG 395
            P   +   L         ++E +  ++  ++ +  K  +SS   +      ++ FA  G
Sbjct: 846 SPTVDSVNGLMQALIVDGRLDELYVVIQ-ELQDMGFKISKSSITLM------LDAFAHAG 898

Query: 396 DVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAK-IND-PNLLRRMILGGARPDAETY- 452
           ++   + +++ +K A Y     +Y  +I    K K + D   ++  M +   +PD   + 
Sbjct: 899 NIFEVKKIYQGMKAAGYFPTMHLYRIMIGLLAKGKRVRDVEAMVSEMEVAXFKPDLSIWN 958

Query: 453 SLLKL 457
           S+LKL
Sbjct: 959 SVLKL 963


>gi|449527556|ref|XP_004170776.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09900-like [Cucumis sativus]
          Length = 665

 Score = 77.4 bits (189), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 84/423 (19%), Positives = 176/423 (41%), Gaps = 28/423 (6%)

Query: 44  RALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQGEKLF--CCIPKDYQNELLYNNL 101
           +A  VME ++ +    P  + Y+ L+    K   I    +L     +  D    + YN +
Sbjct: 163 KATRVME-ILEDSGAVPDVITYNVLISGYCKTGEIGSALQLLDRMSVSPDV---VTYNTI 218

Query: 102 VIACLDKGVIKLSLEYMKKM---RVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKA 158
           +    D G +K ++E + +          I+Y +        S  G+      +L +M+ 
Sbjct: 219 LRTLCDSGKLKEAMEVLDRQMQRECYPDVITYTILIEATCKESGVGQAM---KLLDEMRD 275

Query: 159 DKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTV 218
               P V T+++L+     +  ++  ++  + M     +PN +++ I+  +      +  
Sbjct: 276 KGCKPDVVTYNVLINGICKEGRLDEAIRFLNHMPSYGCQPNVITHNIILRSMCSTGRWMD 335

Query: 219 AETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELP----NVRSKSYVL 274
           AE ++  + +     +  T ++LI    +L +   + R    ++++P       S SY  
Sbjct: 336 AEKFLAEMIRKGCSPSVVTFNILI---NFLCRKGLIGRAIDVLEKMPQHGCTPNSLSYNP 392

Query: 275 AIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNG 334
            + A  +  ++ RA E    M S         YN++++  CK+G +D A  +L ++   G
Sbjct: 393 LLHALCKDKKMERAIEYLDIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQLGSKG 452

Query: 335 CKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEK 394
           C P  ITY  +  G  K    ++        +KL+   K +   P + T  +++   + +
Sbjct: 453 CSPVLITYNTVIDGLSKVGKTDD-------AIKLLDEMKGKGLKPDIITYSTLVGGLSRE 505

Query: 395 GDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAK--INDPNLLRRMILGGARPDAETY 452
           G V  A   F +L++         YN+++    KA+  +   + L  M+  G +P   +Y
Sbjct: 506 GKVDEAIAFFHDLEEMGVKPNAITYNSIMLGLCKARQTVRAIDFLAYMVARGCKPTETSY 565

Query: 453 SLL 455
            +L
Sbjct: 566 MIL 568



 Score = 61.6 bits (148), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 52/193 (26%), Positives = 85/193 (44%), Gaps = 15/193 (7%)

Query: 271 SYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEM 330
           +Y + IEA  + + V +A +L  EM+          YN +I+  CK G +D+A   L  M
Sbjct: 249 TYTILIEATCKESGVGQAMKLLDEMRDKGCKPDVVTYNVLINGICKEGRLDEAIRFLNHM 308

Query: 331 SMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGM---KLITTKKVRSSTPWLETTLSI 387
              GC+PN IT+          N++     +    M   K +     +  +P + T   +
Sbjct: 309 PSYGCQPNVITH----------NIILRSMCSTGRWMDAEKFLAEMIRKGCSPSVVTFNIL 358

Query: 388 IEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKINDPNL--LRRMILGGA 445
           I     KG +G A ++ E++ +   T  +  YN L+ A  K K  +  +  L  M+  G 
Sbjct: 359 INFLCRKGLIGRAIDVLEKMPQHGCTPNSLSYNPLLHALCKDKKMERAIEYLDIMVSRGC 418

Query: 446 RPDAETYSLLKLA 458
            PD  TY+ L  A
Sbjct: 419 YPDIVTYNTLLTA 431



 Score = 56.6 bits (135), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 84/378 (22%), Positives = 144/378 (38%), Gaps = 50/378 (13%)

Query: 43  KRALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQGEKLF------CCIPKDYQNEL 96
           K A+EV++  ++   Y P  + Y+ L+E T K  G+ Q  KL        C P    + +
Sbjct: 229 KEAMEVLDRQMQRECY-PDVITYTILIEATCKESGVGQAMKLLDEMRDKGCKP----DVV 283

Query: 97  LYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQM 156
            YN L+     +G +  ++ ++  M   G   + +  N ++    S GR       L +M
Sbjct: 284 TYNVLINGICKEGRLDEAIRFLNHMPSYGCQPNVITHNIILRSMCSTGRWMDAEKFLAEM 343

Query: 157 KADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLY 216
                +P V TF+IL+        I   + V   M +    PN +SY  L  A    +  
Sbjct: 344 IRKGCSPSVVTFNILINFLCRKGLIGRAIDVLEKMPQHGCTPNSLSYNPLLHALCKDKKM 403

Query: 217 TVAETYVEALEKSMTGNNWSTLDVLI--------------ILYGYLAKG----------- 251
             A  Y++ +       +  T + L+              IL    +KG           
Sbjct: 404 ERAIEYLDIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQLGSKGCSPVLITYNTV 463

Query: 252 -KDLERIWAT---VQELPNVRSK-------SYVLAIEAFGRIAQVSRAEELWLEMQSVKQ 300
              L ++  T   ++ L  ++ K       +Y   +    R  +V  A   + +++ +  
Sbjct: 464 IDGLSKVGKTDDAIKLLDEMKGKGLKPDIITYSTLVGGLSREGKVDEAIAFFHDLEEMGV 523

Query: 301 LKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFK 360
                 YNS++   CK     +A   L  M   GCKP   +Y  L  G     L +E   
Sbjct: 524 KPNAITYNSIMLGLCKARQTVRAIDFLAYMVARGCKPTETSYMILIEGLAYEGLAKE--- 580

Query: 361 ALELGMKLITTKKVRSST 378
           ALEL  +L +   V+ S+
Sbjct: 581 ALELLNELCSRGVVKKSS 598



 Score = 50.1 bits (118), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 40/173 (23%), Positives = 83/173 (47%), Gaps = 3/173 (1%)

Query: 33  INRLRKLQLNKRALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQG-EKLFCCIPKD 91
           IN L +  L  RA++V+E  + +    P  L Y+ LL    K+  + +  E L   + + 
Sbjct: 359 INFLCRKGLIGRAIDVLEK-MPQHGCTPNSLSYNPLLHALCKDKKMERAIEYLDIMVSRG 417

Query: 92  -YQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIP 150
            Y + + YN L+ A    G + +++E + ++   G S   + +N +I   S  G+     
Sbjct: 418 CYPDIVTYNTLLTALCKDGKVDVAVEILNQLGSKGCSPVLITYNTVIDGLSKVGKTDDAI 477

Query: 151 NILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSY 203
            +L +MK   + P + T+  L+   + +  ++  +  + D++   V+PN ++Y
Sbjct: 478 KLLDEMKGKGLKPDIITYSTLVGGLSREGKVDEAIAFFHDLEEMGVKPNAITY 530


>gi|356530296|ref|XP_003533718.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g18940-like [Glycine max]
          Length = 830

 Score = 77.4 bits (189), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 68/264 (25%), Positives = 116/264 (43%), Gaps = 23/264 (8%)

Query: 202 SYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATV 261
           +Y  +  A+A +  Y  A    + +E         T +V++ +YG +       R W  +
Sbjct: 218 AYTTILHAYARSGKYKRAIDLFDKMEGIGLDPTLVTYNVMLDVYGKMG------RSWGRI 271

Query: 262 QELPN-VRSK-------SYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISV 313
            EL + +RSK       +    I A GR   +  A +   E++       T  YNS++ V
Sbjct: 272 LELLDEMRSKGLEFDEFTCSTVISACGREGMLDEARKFLAELKLNGYKPGTVMYNSMLQV 331

Query: 314 YCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKK 373
           + K G   +A  +LKEM  N C P++ITY  LA     +  V  GF  L+ GM +I T  
Sbjct: 332 FGKAGIYTEALSILKEMEDNNCPPDSITYNELA-----ATYVRAGF--LDEGMAVIDTMT 384

Query: 374 VRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKIND 433
            +   P   T  ++I+ + + G   +A  LF ++K        + YN+++    K    +
Sbjct: 385 SKGVMPNAITYTTVIDAYGKAGREDDALRLFSKMKDLGCAPNVYTYNSVLAMLGKKSRTE 444

Query: 434 P--NLLRRMILGGARPDAETYSLL 455
               +L  M L G  P+  T++ +
Sbjct: 445 DVIKVLCEMKLNGCAPNRATWNTM 468



 Score = 75.1 bits (183), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 87/390 (22%), Positives = 170/390 (43%), Gaps = 27/390 (6%)

Query: 79  SQGEKLFCCIP-KDYQNEL-LYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRL 136
           S   KLF  IP + Y  ++  Y  ++ A    G  K +++   KM  +G   + + +N +
Sbjct: 198 SIASKLFDLIPVEKYSLDVRAYTTILHAYARSGKYKRAIDLFDKMEGIGLDPTLVTYNVM 257

Query: 137 IILNSSPGRR-KTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSE 195
           + +    GR    I  +L +M++  +     T   ++     +  ++   K  +++K + 
Sbjct: 258 LDVYGKMGRSWGRILELLDEMRSKGLEFDEFTCSTVISACGREGMLDEARKFLAELKLNG 317

Query: 196 VEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILY---GYLAKGK 252
            +P  V Y  +      A +YT A + ++ +E +    +  T + L   Y   G+L +G 
Sbjct: 318 YKPGTVMYNSMLQVFGKAGIYTEALSILKEMEDNNCPPDSITYNELAATYVRAGFLDEGM 377

Query: 253 DLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVIS 312
            +     +   +PN  + +Y   I+A+G+  +   A  L+ +M+ +        YNSV++
Sbjct: 378 AVIDTMTSKGVMPN--AITYTTVIDAYGKAGREDDALRLFSKMKDLGCAPNVYTYNSVLA 435

Query: 313 VYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCF---KSNLVEEGFKALELGMKLI 369
           +  K    +    +L EM +NGC PN  T+  +   C    K N V           K++
Sbjct: 436 MLGKKSRTEDVIKVLCEMKLNGCAPNRATWNTMLAVCSEEGKHNYVN----------KVL 485

Query: 370 TTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKA 429
              K     P  +T  ++I  +A  G   ++  ++ E+ K+ +T     YN L+ A   A
Sbjct: 486 REMKNCGFEPDKDTFNTLISSYARCGSEVDSAKMYGEMVKSGFTPCVTTYNALLNAL--A 543

Query: 430 KIND----PNLLRRMILGGARPDAETYSLL 455
              D     ++++ M   G +P+  +YSLL
Sbjct: 544 HRGDWKAAESVIQDMQTKGFKPNETSYSLL 573



 Score = 69.3 bits (168), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 82/379 (21%), Positives = 161/379 (42%), Gaps = 28/379 (7%)

Query: 87  CIPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRR 146
           C P  Y     YN+++     K   +  ++ + +M++ G + +   +N ++ + S  G+ 
Sbjct: 423 CAPNVYT----YNSVLAMLGKKSRTEDVIKVLCEMKLNGCAPNRATWNTMLAVCSEEGKH 478

Query: 147 KTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCIL 206
             +  +LR+MK     P   TF+ L+   A   +     K+Y +M +S   P   +Y  L
Sbjct: 479 NYVNKVLREMKNCGFEPDKDTFNTLISSYARCGSEVDSAKMYGEMVKSGFTPCVTTYNAL 538

Query: 207 ATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATV---QE 263
             A A    +  AE+ ++ ++      N ++  +L+  Y      + +E++   +   Q 
Sbjct: 539 LNALAHRGDWKAAESVIQDMQTKGFKPNETSYSLLLHCYSKAGNVRGIEKVEKEIYDGQV 598

Query: 264 LPN-VRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDK 322
            P+ +  ++ VL+      +  + RA +   ++Q           NS++S++ +N    K
Sbjct: 599 FPSWILLRTLVLSNHKCRHLRGMERAFD---QLQKYGYKPDLVVINSMLSMFSRNKMFSK 655

Query: 323 ASGLLKEMSMNGCKPNAITYRHLALGCFKSNLV--EEGFKALELGMKLITTKKVRSSTPW 380
           A  +L  +   G +PN  TY      C     V  +E +KA E+       K +++S P 
Sbjct: 656 AREMLHFIHECGLQPNLFTYN-----CLMDLYVREDECWKAEEV------LKGIQNSVPE 704

Query: 381 LETTL--SIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKINDP--NL 436
            +     ++I+ F  KG +  A  +  E+           YNT +  Y   ++ D    +
Sbjct: 705 PDVVSYNTVIKGFCRKGLMQEAIRVLSEMTTKGIQPTIVTYNTFLSGYAGMELFDEANEV 764

Query: 437 LRRMILGGARPDAETYSLL 455
           +R MI    RP   TY +L
Sbjct: 765 IRFMIEHNCRPSELTYKIL 783



 Score = 50.8 bits (120), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 51/262 (19%), Positives = 111/262 (42%), Gaps = 1/262 (0%)

Query: 98  YNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMK 157
           YN L+ A   +G  K +   ++ M+  G   +   ++ L+   S  G  + I  + +++ 
Sbjct: 535 YNALLNALAHRGDWKAAESVIQDMQTKGFKPNETSYSLLLHCYSKAGNVRGIEKVEKEIY 594

Query: 158 ADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYT 217
             +V P       L+       ++ G+ + +  +++   +P+ V    + +  +  ++++
Sbjct: 595 DGQVFPSWILLRTLVLSNHKCRHLRGMERAFDQLQKYGYKPDLVVINSMLSMFSRNKMFS 654

Query: 218 VAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQ-ELPNVRSKSYVLAI 276
            A   +  + +     N  T + L+ LY    +    E +   +Q  +P     SY   I
Sbjct: 655 KAREMLHFIHECGLQPNLFTYNCLMDLYVREDECWKAEEVLKGIQNSVPEPDVVSYNTVI 714

Query: 277 EAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCK 336
           + F R   +  A  +  EM +         YN+ +S Y      D+A+ +++ M  + C+
Sbjct: 715 KGFCRKGLMQEAIRVLSEMTTKGIQPTIVTYNTFLSGYAGMELFDEANEVIRFMIEHNCR 774

Query: 337 PNAITYRHLALGCFKSNLVEEG 358
           P+ +TY+ L  G  K+   EE 
Sbjct: 775 PSELTYKILVDGYCKAGKHEEA 796


>gi|224132422|ref|XP_002328265.1| predicted protein [Populus trichocarpa]
 gi|222837780|gb|EEE76145.1| predicted protein [Populus trichocarpa]
          Length = 742

 Score = 77.4 bits (189), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 116/512 (22%), Positives = 205/512 (40%), Gaps = 75/512 (14%)

Query: 12  SAFQSWMREGFPVHRGEIFHSINRLRKLQLNKRALEVMEWVIRE---RPYRPKELDYSYL 68
           S F+S +R  FP +   I+     LR      R ++ + W+ ++       P+   ++ L
Sbjct: 5   SQFKS-LRFRFPENPPSIYLYNVLLRSCTKEGR-VDCVSWLCKDMVASGVSPETYTFNVL 62

Query: 69  LEFTIKNHGISQGEKLFCCIPKD--YQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGH 126
           +     +  +    +LF  +P+     NE  +  LV      G     LE + +MR LG 
Sbjct: 63  IGLLCDSGCLDDARELFDKMPEKGCEPNEYSFGILVRGYCRAGFTSKGLELLGEMRRLGF 122

Query: 127 SISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMK 186
           S + +V+N LI      G+      ++ +M+ D ++P V TF+  +    +   +    +
Sbjct: 123 SPNKVVYNTLISSFCKEGKTDDAEKLVDEMRKDGLSPDVVTFNARISALCSSGKVLEASR 182

Query: 187 VYSDMKRSEV----EPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLI 242
           ++ DM+  EV    +PN ++Y ++        +   A    E ++ S    N  + +  I
Sbjct: 183 IFRDMQIDEVLGLPQPNIITYNLMLGGFCKEGMLEEARALFEKMKVSENLMNRESYN--I 240

Query: 243 ILYGYLAKGKDLERIWATVQEL------PNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQ 296
            L G +  GK LE     ++E+      PNV S  Y + ++   +   +  A  L   M 
Sbjct: 241 WLLGLVRIGKLLEA-QLVLKEMVDMGMEPNVYS--YNIVMDGLCKNGVLFDARMLMRLMT 297

Query: 297 SVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFK----- 351
           S   L  T  Y +++  YC  G + +A+ +L+EM  +GC PN  T   L    +K     
Sbjct: 298 SSGVLPDTVTYTTLLHGYCHTGKVSEANNVLREMMRDGCSPNNYTCNILLYSLWKEGRIS 357

Query: 352 --------------------SNLVEEGF-------KALEL--GM---------------- 366
                                N+V +G        KA+E+  GM                
Sbjct: 358 EAEELLQKMNEKGYVIDTVTCNIVIDGLCNNGKLDKAIEIVNGMWTHGSAALGNLGNSYI 417

Query: 367 KLITTKKVRSST-PWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKA 425
            L+     R    P L +  +II    + G VG A+  F E+   N    + +Y+  I +
Sbjct: 418 GLVDDSDSRKKCMPDLISYSTIISGLCKAGRVGEAKKKFIEMMGKNLQPDSAIYDVFIHS 477

Query: 426 YVK-AKINDP-NLLRRMILGGARPDAETYSLL 455
           + K  KI+    +L+ M   G     +TY+ L
Sbjct: 478 FCKEGKISSAFRVLKDMEKKGCNKTLQTYNSL 509



 Score = 68.9 bits (167), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 86/353 (24%), Positives = 147/353 (41%), Gaps = 16/353 (4%)

Query: 78  ISQGEKLFCCIPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLI 137
           ISQ + L    P++  +  LYN L+ +C  +G +       K M   G S     FN LI
Sbjct: 4   ISQFKSLRFRFPENPPSIYLYNVLLRSCTKEGRVDCVSWLCKDMVASGVSPETYTFNVLI 63

Query: 138 ILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVE 197
            L    G       +  +M      P+  +F IL++           +++  +M+R    
Sbjct: 64  GLLCDSGCLDDARELFDKMPEKGCEPNEYSFGILVRGYCRAGFTSKGLELLGEMRRLGFS 123

Query: 198 PNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLE-- 255
           PN+V Y  L ++         AE  V+ + K     +  T +  I      + GK LE  
Sbjct: 124 PNKVVYNTLISSFCKEGKTDDAEKLVDEMRKDGLSPDVVTFNARI--SALCSSGKVLEAS 181

Query: 256 RIWATVQ-----ELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSV 310
           RI+  +Q      LP     +Y L +  F +   +  A  L+ +M+  + L   E YN  
Sbjct: 182 RIFRDMQIDEVLGLPQPNIITYNLMLGGFCKEGMLEEARALFEKMKVSENLMNRESYNIW 241

Query: 311 ISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLIT 370
           +    + G + +A  +LKEM   G +PN  +Y  +  G  K+ ++   F A  L M+L+T
Sbjct: 242 LLGLVRIGKLLEAQLVLKEMVDMGMEPNVYSYNIVMDGLCKNGVL---FDARML-MRLMT 297

Query: 371 TKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLI 423
           +  V    P   T  +++  +   G V  A N+  E+ +   +   +  N L+
Sbjct: 298 SSGV---LPDTVTYTTLLHGYCHTGKVSEANNVLREMMRDGCSPNNYTCNILL 347



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 77/344 (22%), Positives = 136/344 (39%), Gaps = 42/344 (12%)

Query: 98  YNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMK 157
           YN ++      GV+  +   M+ M   G     + +  L+      G+     N+LR+M 
Sbjct: 273 YNIVMDGLCKNGVLFDARMLMRLMTSSGVLPDTVTYTTLLHGYCHTGKVSEANNVLREMM 332

Query: 158 ADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEP-----NEVSYCI-LATAHA 211
            D  +P+  T +IL            L  ++ + + SE E      NE  Y I   T + 
Sbjct: 333 RDGCSPNNYTCNIL------------LYSLWKEGRISEAEELLQKMNEKGYVIDTVTCNI 380

Query: 212 VARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSK- 270
           V           +A+E  +    W+        +G  A G +L   +  + +  + R K 
Sbjct: 381 VIDGLCNNGKLDKAIE--IVNGMWT--------HGSAALG-NLGNSYIGLVDDSDSRKKC 429

Query: 271 -----SYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASG 325
                SY   I    +  +V  A++ ++EM        +  Y+  I  +CK G I  A  
Sbjct: 430 MPDLISYSTIISGLCKAGRVGEAKKKFIEMMGKNLQPDSAIYDVFIHSFCKEGKISSAFR 489

Query: 326 LLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTL 385
           +LK+M   GC     TY  L +G    N + E +        LI   + R  +P +    
Sbjct: 490 VLKDMEKKGCNKTLQTYNSLIMGLGSKNQIFEIY-------GLIDEMRERGVSPDVSIYN 542

Query: 386 SIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKA 429
           +++    E G V +A ++ +E+ +   +     ++ LIKA+ KA
Sbjct: 543 NVLSSLCEGGRVKDAPSVLDEMLQKGISPNISSFSILIKAFCKA 586



 Score = 43.9 bits (102), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 56/265 (21%), Positives = 110/265 (41%), Gaps = 15/265 (5%)

Query: 59  RPKELDYSYLLEFTIKNHGISQGEKLFCCIPKDYQNELL--YNNLVIACLDKGVIKLSLE 116
           +P    Y   +    K   IS   ++   + K   N+ L  YN+L++    K  I     
Sbjct: 465 QPDSAIYDVFIHSFCKEGKISSAFRVLKDMEKKGCNKTLQTYNSLIMGLGSKNQIFEIYG 524

Query: 117 YMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEA 176
            + +MR  G S    ++N ++      GR K  P++L +M    ++P++S+F IL+K   
Sbjct: 525 LIDEMRERGVSPDVSIYNNVLSSLCEGGRVKDAPSVLDEMLQKGISPNISSFSILIKAFC 584

Query: 177 NDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAV-ARLYTVAETYVEALEKSMTGNNW 235
              +   + +++ ++  +     E  Y +      V   +    E +  AL++S    N+
Sbjct: 585 KACDFSAVDEIF-EIALNVCGHKEALYSLTFNELLVGGEVVKAKELFETALDRSFDVGNF 643

Query: 236 STLDVLIILYGYLAKGKDLERIWATVQELPN----VRSKSYVLAIEAFGRIAQVSRAEEL 291
              D    L  +L K + L+     + +L +        S++  I+  G+      A+EL
Sbjct: 644 LYKD----LIDHLCKDEKLDDASGILHKLIDKGYWFDPASFMPVIDGLGKRGNKHEADEL 699

Query: 292 ---WLEMQSVKQLKATEQYNSVISV 313
               +EM S  ++K     N+  S+
Sbjct: 700 AEKMMEMASEGKVKNKVHQNASCSI 724



 Score = 41.6 bits (96), Expect = 0.90,   Method: Compositional matrix adjust.
 Identities = 57/267 (21%), Positives = 113/267 (42%), Gaps = 19/267 (7%)

Query: 193 RSEVEPNEVSY-CILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKG 251
           R +  P+ +SY  I++      R+    + ++E + K++  ++ +  DV I  + +  +G
Sbjct: 426 RKKCMPDLISYSTIISGLCKAGRVGEAKKKFIEMMGKNLQPDS-AIYDVFI--HSFCKEG 482

Query: 252 KDLERIWATVQELP----NVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQY 307
           K +   +  ++++     N   ++Y   I   G   Q+     L  EM+          Y
Sbjct: 483 K-ISSAFRVLKDMEKKGCNKTLQTYNSLIMGLGSKNQIFEIYGLIDEMRERGVSPDVSIY 541

Query: 308 NSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMK 367
           N+V+S  C+ G +  A  +L EM   G  PN  ++  L     K+       +  E+ + 
Sbjct: 542 NNVLSSLCEGGRVKDAPSVLDEMLQKGISPNISSFSILIKAFCKACDFSAVDEIFEIALN 601

Query: 368 LITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYV 427
           +   K+   S  + E  +         G+V  A+ LFE     ++    F+Y  LI    
Sbjct: 602 VCGHKEALYSLTFNELLVG--------GEVVKAKELFETALDRSFDVGNFLYKDLIDHLC 653

Query: 428 K-AKINDPN-LLRRMILGGARPDAETY 452
           K  K++D + +L ++I  G   D  ++
Sbjct: 654 KDEKLDDASGILHKLIDKGYWFDPASF 680


>gi|357491817|ref|XP_003616196.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355517531|gb|AES99154.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 981

 Score = 77.4 bits (189), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 75/337 (22%), Positives = 149/337 (44%), Gaps = 21/337 (6%)

Query: 98  YNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMK 157
           YN L+      G +K + +    M   G ++    FN LI ++ S G      ++L +M+
Sbjct: 296 YNTLIDLYGKAGRLKDAADVFADMMKSGVAMDTCTFNTLIFISGSHGNLLEAESLLDKME 355

Query: 158 ADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYT 217
              ++ +  T++I + + A   +I+  +  Y  ++   + P+ V+Y  L  A     +  
Sbjct: 356 ERGISSNTRTYNIFLSLYATAGSIDAALSYYRRIREVGLFPDTVTYRALLGALCTENMVQ 415

Query: 218 VAETYVEALEKSMTGNNWSTLDVLIILY---GYLAKGKDLERIWATVQELPNVRSKSYVL 274
             E  ++ +EK+    +  +L  ++ +Y   G + K  DL + +    E P     S++ 
Sbjct: 416 AVEGVIDEMEKNSVSLDALSLSGIVKMYINEGDVDKANDLLQKYG---EPP-----SFIC 467

Query: 275 A--IEAFGRIAQVSRAEELWLEMQS-VKQLKATEQYNSVISVYCKNGFIDKASGLLKEMS 331
           A  I+AF      + AE ++   +   +Q +   ++N +I  Y K    DKA  L +EM 
Sbjct: 468 AAIIDAFAEKGFWAEAENIFYRKRDKARQARDILEFNVMIKAYGKANHYDKAVLLFEEMK 527

Query: 332 MNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIF 391
             G  P   TY  +      ++LV++  + L + M+ +  K      P  +T  ++I  +
Sbjct: 528 YQGISPADSTYNSIIQMLSGADLVDQA-RDLTVEMQEMGFK------PHCQTFSAVIGCY 580

Query: 392 AEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVK 428
           A  G + +A  +++E+  A       VY  LI  + +
Sbjct: 581 ARLGQLSDAVIVYQEMISAGVKPNETVYGALINGFAE 617



 Score = 60.8 bits (146), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 63/273 (23%), Positives = 117/273 (42%), Gaps = 5/273 (1%)

Query: 118 MKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEAN 177
            ++M+  G S +   +N +I + S         ++  +M+     PH  TF  ++   A 
Sbjct: 523 FEEMKYQGISPADSTYNSIIQMLSGADLVDQARDLTVEMQEMGFKPHCQTFSAVIGCYAR 582

Query: 178 DHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWST 237
              +   + VY +M  + V+PNE  Y  L    A       A  Y   +++S    N   
Sbjct: 583 LGQLSDAVIVYQEMISAGVKPNETVYGALINGFAEHGRLDEALQYFHLMQESGLSANLVV 642

Query: 238 LDVLIILYGYLAKGKDLERIWATVQELPNVRS-KSYVLAIEAFGRIAQVSRAEELWLEMQ 296
           L  L+  Y      K ++ I+  +Q +  V    +    I AF  +  VS A+  + + +
Sbjct: 643 LTTLMKSYSKAGDLKGVKSIYKQMQNMEGVLDLAARSSMITAFAELGLVSEAKLTFEKFK 702

Query: 297 SVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVE 356
              Q  +T  Y  ++ VY   G ID+A  + +EM ++G   + ++Y  + L C+  N   
Sbjct: 703 ETGQADST-SYGIMMYVYKDIGMIDEAIKIAEEMKISGLLRDCVSYNRV-LTCYAIN--R 758

Query: 357 EGFKALELGMKLITTKKVRSSTPWLETTLSIIE 389
           +  K  EL  ++I +KK+      L    +I++
Sbjct: 759 QFHKCGELLYEMIVSKKLLPDDGTLIVLFTILK 791



 Score = 43.5 bits (101), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 67/281 (23%), Positives = 105/281 (37%), Gaps = 63/281 (22%)

Query: 236 STLDVLIILYGYLAKGKDLERIWATVQELP-NVRSKSYVLAIEAFGRIAQVSRAEELWLE 294
           +T + LI LYG   + KD   ++A + +    + + ++   I   G    +  AE L  +
Sbjct: 294 TTYNTLIDLYGKAGRLKDAADVFADMMKSGVAMDTCTFNTLIFISGSHGNLLEAESLLDK 353

Query: 295 MQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNL 354
           M+       T  YN  +S+Y   G ID A    + +   G  P+ +TYR L       N+
Sbjct: 354 MEERGISSNTRTYNIFLSLYATAGSIDAALSYYRRIREVGLFPDTVTYRALLGALCTENM 413

Query: 355 VE--EG-----------FKALELG--MKL-ITTKKVRSSTPWLE--------TTLSIIEI 390
           V+  EG             AL L   +K+ I    V  +   L+           +II+ 
Sbjct: 414 VQAVEGVIDEMEKNSVSLDALSLSGIVKMYINEGDVDKANDLLQKYGEPPSFICAAIIDA 473

Query: 391 FAEKGDVGNAEN------------------------------------LFEELKKANYTK 414
           FAEKG    AEN                                    LFEE+K    + 
Sbjct: 474 FAEKGFWAEAENIFYRKRDKARQARDILEFNVMIKAYGKANHYDKAVLLFEEMKYQGISP 533

Query: 415 YTFVYNTLIKAYVKAKINDP--NLLRRMILGGARPDAETYS 453
               YN++I+    A + D   +L   M   G +P  +T+S
Sbjct: 534 ADSTYNSIIQMLSGADLVDQARDLTVEMQEMGFKPHCQTFS 574



 Score = 41.2 bits (95), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 65/310 (20%), Positives = 123/310 (39%), Gaps = 51/310 (16%)

Query: 94  NELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNIL 153
           NE +Y  L+    + G +  +L+Y   M+  G S + +V   L+   S  G  K + +I 
Sbjct: 604 NETVYGALINGFAEHGRLDEALQYFHLMQESGLSANLVVLTTLMKSYSKAGDLKGVKSIY 663

Query: 154 RQMK----------------------------------ADKVAPHVSTFHILMKIEANDH 179
           +QM+                                   +      +++ I+M +  +  
Sbjct: 664 KQMQNMEGVLDLAARSSMITAFAELGLVSEAKLTFEKFKETGQADSTSYGIMMYVYKDIG 723

Query: 180 NIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVAR-LYTVAETYVEAL-EKSMTGNNWST 237
            I+  +K+  +MK S +  + VSY  + T +A+ R  +   E   E +  K +  ++ + 
Sbjct: 724 MIDEAIKIAEEMKISGLLRDCVSYNRVLTCYAINRQFHKCGELLYEMIVSKKLLPDDGT- 782

Query: 238 LDVLIILYGYLAKGK----DLERIWATVQE-LPNVRSKSYVLAIEAFGRIAQVSRAEELW 292
              LI+L+  L K +      E++    QE  P     +Y       G      +  +  
Sbjct: 783 ---LIVLFTILKKAEFPVEAAEQLELCYQEGKPYASQATYTALYSLLGMHTLALKFAQTV 839

Query: 293 LEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKS 352
           LE      L ++  YN  I  Y   G ++KA  +  +M     +P+ +TY +L +GC+  
Sbjct: 840 LE-----NLDSSAAYNVAIYAYASAGDVEKALNIHMKMRDKHVEPDIVTYINL-VGCYGK 893

Query: 353 NLVEEGFKAL 362
             + EG K +
Sbjct: 894 AGMVEGVKKI 903


>gi|357487221|ref|XP_003613898.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355515233|gb|AES96856.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 807

 Score = 77.4 bits (189), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 90/398 (22%), Positives = 160/398 (40%), Gaps = 48/398 (12%)

Query: 94  NELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNIL 153
           N   YN L+      G I+   E   KM   G + + + FN +I L  + GR + +  +L
Sbjct: 270 NSHTYNTLIDIYGKAGQIQAVYEIFAKMIKQGVAPTTVTFNTMIHLYGNHGRIREVSLLL 329

Query: 154 RQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVA 213
           ++M+  +  P   T++IL+ +    +NI+   K    MK + +EP+ VSY  L  A++  
Sbjct: 330 QRMEELRCPPDTRTYNILISVLVKHNNIKLAAKYLMKMKEAFLEPDLVSYRTLLYAYSTR 389

Query: 214 RLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQEL---PNVRSK 270
           ++   AE  V  +++     +  T   L  +Y    +   LE+ W   +      N+ S 
Sbjct: 390 KMVQEAEELVREMDERGLKIDEFTQAALTRMY---VESNMLEQSWLWFRRFHVAGNITSS 446

Query: 271 SYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEM 330
            Y   I+A+G       AE++++  +  K+L     +N +I  Y      DKA  L   M
Sbjct: 447 CYCANIDAYGEQGYTLEAEKVFMCCKQKKKLSVL-VFNVMIKAYGIGKCYDKACQLFDSM 505

Query: 331 SMNGCKPNAITYR---HLALGCFKSNLV--------EEG-----------------FKAL 362
              G   N  +Y    H+     K ++         E G                    L
Sbjct: 506 EKFGIVANECSYSSLIHILASADKPHIAKPYLNKMQEAGLVSDCILYCAVISSFVKLSQL 565

Query: 363 ELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTL 422
           ++  +L       +  P       +I  FA+ G+V  A    + ++ A +     +YN+L
Sbjct: 566 DMAEELYIEMIGHTVKPDAIIYSVLINAFADVGNVIKATGYLDRMRNAGFVGNQAIYNSL 625

Query: 423 IKAYVKAKINDPNLLRRMILGGARPDAETYSLLKLAEQ 460
           +K Y K             +G  +   +TY+LL+  +Q
Sbjct: 626 MKLYTK-------------IGYLKEAQQTYTLLQSLDQ 650



 Score = 55.5 bits (132), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 67/300 (22%), Positives = 126/300 (42%), Gaps = 23/300 (7%)

Query: 149 IPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILAT 208
           + ++  +M A+ V P  ST+  L+ + +     E  +     M    +EP+EV+  ++  
Sbjct: 161 LESLWNEMNANGVLPVNSTYGTLIDVYSKSGFKEEALGWLQRMLSQGMEPDEVTMGVVVQ 220

Query: 209 AHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNV- 267
            +  AR +  AE +            WS  + L+I   +     D+  +   V  + NV 
Sbjct: 221 LYKRAREFQKAEEFFR---------KWSRGEPLVIAIDH--NTVDVRHVCNEVSHV-NVC 268

Query: 268 -RSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGL 326
             S +Y   I+ +G+  Q+    E++ +M        T  +N++I +Y  +G I + S L
Sbjct: 269 LNSHTYNTLIDIYGKAGQIQAVYEIFAKMIKQGVAPTTVTFNTMIHLYGNHGRIREVSLL 328

Query: 327 LKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLS 386
           L+ M    C P+  TY  L     K N        ++L  K +   K     P L +  +
Sbjct: 329 LQRMEELRCPPDTRTYNILISVLVKHN-------NIKLAAKYLMKMKEAFLEPDLVSYRT 381

Query: 387 IIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKINDPNLL--RRMILGG 444
           ++  ++ +  V  AE L  E+ +       F    L + YV++ + + + L  RR  + G
Sbjct: 382 LLYAYSTRKMVQEAEELVREMDERGLKIDEFTQAALTRMYVESNMLEQSWLWFRRFHVAG 441



 Score = 53.1 bits (126), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 50/187 (26%), Positives = 83/187 (44%), Gaps = 21/187 (11%)

Query: 289 EELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALG 348
           E LW EM +   L     Y ++I VY K+GF ++A G L+ M   G +P+ +T   + + 
Sbjct: 162 ESLWNEMNANGVLPVNSTYGTLIDVYSKSGFKEEALGWLQRMLSQGMEPDEVT-MGVVVQ 220

Query: 349 CFKS----NLVEEGFKALELGMKLI-----TTKKVRSSTPWL---------ETTLSIIEI 390
            +K        EE F+    G  L+      T  VR     +          T  ++I+I
Sbjct: 221 LYKRAREFQKAEEFFRKWSRGEPLVIAIDHNTVDVRHVCNEVSHVNVCLNSHTYNTLIDI 280

Query: 391 FAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVK-AKINDPN-LLRRMILGGARPD 448
           + + G +     +F ++ K      T  +NT+I  Y    +I + + LL+RM      PD
Sbjct: 281 YGKAGQIQAVYEIFAKMIKQGVAPTTVTFNTMIHLYGNHGRIREVSLLLQRMEELRCPPD 340

Query: 449 AETYSLL 455
             TY++L
Sbjct: 341 TRTYNIL 347



 Score = 45.8 bits (107), Expect = 0.041,   Method: Compositional matrix adjust.
 Identities = 43/157 (27%), Positives = 68/157 (43%), Gaps = 8/157 (5%)

Query: 272 YVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMS 331
           Y   I +F +++Q+  AEEL++EM           Y+ +I+ +   G + KA+G L  M 
Sbjct: 552 YCAVISSFVKLSQLDMAEELYIEMIGHTVKPDAIIYSVLINAFADVGNVIKATGYLDRMR 611

Query: 332 MNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIF 391
             G   N   Y  L     K   ++E  +   L   L     V SS         +I+++
Sbjct: 612 NAGFVGNQAIYNSLMKLYTKIGYLKEAQQTYTLLQSLDQAPSVFSSN-------CMIDLY 664

Query: 392 AEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVK 428
            E+  V  A+ +FE LKK N     F Y  ++  Y K
Sbjct: 665 TERLMVEQAKEIFESLKKNNIAN-EFSYAMMLCMYKK 700



 Score = 44.3 bits (103), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 57/277 (20%), Positives = 126/277 (45%), Gaps = 21/277 (7%)

Query: 80  QGEKLF-CCIPKDYQNELLYNNLVIA-----CLDKGVIKLSLEYMKKMRVLGHSISYLVF 133
           + EK+F CC  K   + L++N ++ A     C DK       + M+K  ++ +  SY   
Sbjct: 463 EAEKVFMCCKQKKKLSVLVFNVMIKAYGIGKCYDKAC--QLFDSMEKFGIVANECSY--- 517

Query: 134 NRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKR 193
           + LI + +S  +       L +M+   +      +  ++        ++   ++Y +M  
Sbjct: 518 SSLIHILASADKPHIAKPYLNKMQEAGLVSDCILYCAVISSFVKLSQLDMAEELYIEMIG 577

Query: 194 SEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILY---GYLAK 250
             V+P+ + Y +L  A A       A  Y++ +  +    N +  + L+ LY   GYL +
Sbjct: 578 HTVKPDAIIYSVLINAFADVGNVIKATGYLDRMRNAGFVGNQAIYNSLMKLYTKIGYLKE 637

Query: 251 GKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQ--YN 308
            +    +  ++ + P+V S + +  I+ +     V +A+E++   +S+K+     +  Y 
Sbjct: 638 AQQTYTLLQSLDQAPSVFSSNCM--IDLYTERLMVEQAKEIF---ESLKKNNIANEFSYA 692

Query: 309 SVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHL 345
            ++ +Y K G +D+A  + K+M   G   + ++Y ++
Sbjct: 693 MMLCMYKKIGRLDEAFQIAKQMRKQGLLTDLLSYNNV 729


>gi|302833221|ref|XP_002948174.1| hypothetical protein VOLCADRAFT_116752 [Volvox carteri f.
           nagariensis]
 gi|300266394|gb|EFJ50581.1| hypothetical protein VOLCADRAFT_116752 [Volvox carteri f.
           nagariensis]
          Length = 1001

 Score = 77.4 bits (189), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 87/360 (24%), Positives = 158/360 (43%), Gaps = 33/360 (9%)

Query: 29  IFHSINRLRKLQLNKRALEVMEWV--IRER-PYRPKELDYSYLLEFTIKNHG--ISQGEK 83
           + H ++RL K   ++RA+E+ +W+    ER P R     YSY    ++  HG  + +  +
Sbjct: 109 LHHDLSRLGK---DRRAMELFDWLRSANERSPLRALCDVYSYTATISLCIHGQDVDRALE 165

Query: 84  LFCCIPKDY--QNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNS 141
           L   +      +N   Y  L+  C+  G + L+L+    MR +    + + +N L+ +  
Sbjct: 166 LMQEMRSRNIERNVHTYTALMNVCIKCGKLPLALDIYNSMRAVNCMPNVVTYNTLVDVYG 225

Query: 142 SPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHN-IEGLMKVYSDMKRSEVEPNE 200
             G+ +   ++L  MK + V P + T++ L+ I  N  N     + VY  +      PN 
Sbjct: 226 KLGQWERAIHVLDVMKHEGVEPVLRTYNTLI-IACNMCNQPREALAVYQRLLSDGFTPNS 284

Query: 201 VSYCILATAHA-VARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWA 259
            +Y  L +A+    +L    E Y E L ++M        D  +I Y  L    +    W 
Sbjct: 285 TTYNALISAYGKTTQLGKALEVYQEMLRQNM--------DRSVITYSSLISACEKAGQWE 336

Query: 260 TV----------QELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNS 309
           T           + +PN  + +Y   + A  +  Q  +A E++ +M +         Y +
Sbjct: 337 TALRIFNEMQQDKCVPN--TVTYNSLVTACAQGGQWEKAAEVFEQMNAHGCTPDVVTYTA 394

Query: 310 VISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLI 369
           +IS Y + G   KA     +M + GCKP+AI Y  +    +++ ++    KAL+L M  +
Sbjct: 395 LISAYERGGQWQKALQAFHKMCVQGCKPDAIVYNAIIDTLWETGIIWAQGKALQLFMTAV 454



 Score = 63.2 bits (152), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 58/275 (21%), Positives = 112/275 (40%), Gaps = 12/275 (4%)

Query: 152 ILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHA 211
           ++++M++  +  +V T+  LM +      +   + +Y+ M+     PN V+Y  L   + 
Sbjct: 166 LMQEMRSRNIERNVHTYTALMNVCIKCGKLPLALDIYNSMRAVNCMPNVVTYNTLVDVYG 225

Query: 212 VARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQE---LPNVR 268
               +  A   ++ ++         T + LII      + ++   ++  +      PN  
Sbjct: 226 KLGQWERAIHVLDVMKHEGVEPVLRTYNTLIIACNMCNQPREALAVYQRLLSDGFTPN-- 283

Query: 269 SKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLK 328
           S +Y   I A+G+  Q+ +A E++ EM      ++   Y+S+IS   K G  + A  +  
Sbjct: 284 STTYNALISAYGKTTQLGKALEVYQEMLRQNMDRSVITYSSLISACEKAGQWETALRIFN 343

Query: 329 EMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSII 388
           EM  + C PN +TY  L   C +    E+  +  E              TP + T  ++I
Sbjct: 344 EMQQDKCVPNTVTYNSLVTACAQGGQWEKAAEVFE-------QMNAHGCTPDVVTYTALI 396

Query: 389 EIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLI 423
             +   G    A   F ++          VYN +I
Sbjct: 397 SAYERGGQWQKALQAFHKMCVQGCKPDAIVYNAII 431


>gi|115458614|ref|NP_001052907.1| Os04g0446100 [Oryza sativa Japonica Group]
 gi|38344550|emb|CAD40961.2| OSJNBa0027P08.18 [Oryza sativa Japonica Group]
 gi|113564478|dbj|BAF14821.1| Os04g0446100 [Oryza sativa Japonica Group]
          Length = 583

 Score = 77.4 bits (189), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 72/266 (27%), Positives = 120/266 (45%), Gaps = 10/266 (3%)

Query: 98  YNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMK 157
           +N ++      G ++ +LE +++M   G S   +  N L+              +LR+++
Sbjct: 254 FNVVIKGVCRVGQVQKALELVERMNEFGCSPDTVTHNILVDGLCRTNEVSRGHEVLRRLQ 313

Query: 158 ADKVA-PHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHA-VARL 215
            D V  P+V TF  ++        +E  M VY+DM  S + PN V+Y +L   +  V  L
Sbjct: 314 RDGVCMPNVVTFTSVISGYCKAGKLEDAMAVYNDMVASGIMPNTVTYNVLINGYGKVGDL 373

Query: 216 YTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQE---LPNVRSKSY 272
            +  E Y + + +     +  T   LI  Y    +  D  RIW+ + +    PNV + S 
Sbjct: 374 GSAVEVY-QQMTRLRCPPDVVTFSSLIDGYCRCGQLDDALRIWSDMAQHRIQPNVYTFSI 432

Query: 273 VLAIEAFGRIAQVSRAEELWLEMQSVKQLKATE-QYNSVISVYCKNGFIDKASGLLKEMS 331
           +  I +  +  +   A  L  E+     +      YN VI V CK G +D+A+ + K M 
Sbjct: 433 I--IHSLCKQNRSDEAIGLLNELNLRPDIAPQAFIYNPVIDVLCKCGKVDEANLIRKGME 490

Query: 332 MNGCKPNAITYRHLALG-CFKSNLVE 356
             GC+P+  TY  L +G C KS + E
Sbjct: 491 EKGCRPDKYTYTILIIGYCMKSRISE 516



 Score = 65.5 bits (158), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 73/362 (20%), Positives = 153/362 (42%), Gaps = 23/362 (6%)

Query: 101 LVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADK 160
           LV +C    ++  S   + K    G  +    +N+L+      GR   +  +  +   D+
Sbjct: 186 LVSSCTCANLLDASATLLSKASEFGCRVEAYAYNKLMSSLIGRGRVHDVVALFERWIQDR 245

Query: 161 V-APHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVA 219
           V +P V +F++++K       ++  +++   M      P+ V++ IL          +  
Sbjct: 246 VYSPDVWSFNVVIKGVCRVGQVQKALELVERMNEFGCSPDTVTHNILVDGLCRTNEVSRG 305

Query: 220 ETYVEALEKS-MTGNNWSTLDVLIILYGYLAKGKDLERIWATVQEL------PNVRSKSY 272
              +  L++  +   N  T   +I   GY   GK LE   A   ++      PN  + +Y
Sbjct: 306 HEVLRRLQRDGVCMPNVVTFTSVI--SGYCKAGK-LEDAMAVYNDMVASGIMPN--TVTY 360

Query: 273 VLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSM 332
            + I  +G++  +  A E++ +M  ++       ++S+I  YC+ G +D A  +  +M+ 
Sbjct: 361 NVLINGYGKVGDLGSAVEVYQQMTRLRCPPDVVTFSSLIDGYCRCGQLDDALRIWSDMAQ 420

Query: 333 NGCKPNAITYRHLALGCFKSNLVEEGFKAL-ELGMKLITTKKVRSSTPWLETTLSIIEIF 391
           +  +PN  T+  +     K N  +E    L EL ++     +     P       +I++ 
Sbjct: 421 HRIQPNVYTFSIIIHSLCKQNRSDEAIGLLNELNLRPDIAPQAFIYNP-------VIDVL 473

Query: 392 AEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAY-VKAKINDPNL-LRRMILGGARPDA 449
            + G V  A  + + +++       + Y  LI  Y +K++I++  +    M+  G  PD+
Sbjct: 474 CKCGKVDEANLIRKGMEEKGCRPDKYTYTILIIGYCMKSRISEAIMFFHEMVEAGCSPDS 533

Query: 450 ET 451
            T
Sbjct: 534 IT 535



 Score = 47.0 bits (110), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 62/329 (18%), Positives = 130/329 (39%), Gaps = 60/329 (18%)

Query: 43  KRALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQGEKLF-------CCIPKDYQNE 95
           ++ALE++E  + E    P  + ++ L++   + + +S+G ++         C+P    N 
Sbjct: 268 QKALELVER-MNEFGCSPDTVTHNILVDGLCRTNEVSRGHEVLRRLQRDGVCMP----NV 322

Query: 96  LLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQ 155
           + + +++      G ++ ++     M   G   + + +N LI      G   +   + +Q
Sbjct: 323 VTFTSVISGYCKAGKLEDAMAVYNDMVASGIMPNTVTYNVLINGYGKVGDLGSAVEVYQQ 382

Query: 156 MKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARL 215
           M   +  P V TF  L+        ++  ++++SDM +  ++PN               +
Sbjct: 383 MTRLRCPPDVVTFSSLIDGYCRCGQLDDALRIWSDMAQHRIQPN---------------V 427

Query: 216 YTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQEL---PNVRSKSY 272
           YT +                      II++    + +  E I   + EL   P++  +++
Sbjct: 428 YTFS----------------------IIIHSLCKQNRSDEAI-GLLNELNLRPDIAPQAF 464

Query: 273 VL--AIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEM 330
           +    I+   +  +V  A  +   M+          Y  +I  YC    I +A     EM
Sbjct: 465 IYNPVIDVLCKCGKVDEANLIRKGMEEKGCRPDKYTYTILIIGYCMKSRISEAIMFFHEM 524

Query: 331 SMNGCKPNAITYRHLALGCFKSNLVEEGF 359
              GC P++IT     + CF S L++ G 
Sbjct: 525 VEAGCSPDSIT-----VNCFISCLLKAGM 548


>gi|326501502|dbj|BAK02540.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 673

 Score = 77.4 bits (189), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 82/415 (19%), Positives = 171/415 (41%), Gaps = 57/415 (13%)

Query: 59  RPKELDYSYLLEFTIKNHGISQGEKLF-----CCIPKDYQNELLYNNLVIACLDKGVIKL 113
           +P+   Y+ LL+  +K   +   E +      C +  D   E  Y+ LV A    G  + 
Sbjct: 301 KPRTRAYNALLKGYVKIGSLKNAEHVLDEMSECGVAPD---EATYSLLVDAYTRAGRWES 357

Query: 114 SLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMK 173
           +   +K+M   G   S  VF+R++      G  +    +LR+M A  V P    +++++ 
Sbjct: 358 ARILLKEMEADGVKPSSYVFSRILAGFRDRGDWQKAFAVLREMHASGVQPDRHFYNVMID 417

Query: 174 IEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGN 233
                + +   M V++ M+   +EP+ V++  L  AH     +  A    + + +S    
Sbjct: 418 TFGKYNCLGHAMDVFNRMRGEGIEPDVVTWNTLIDAHCKGGRHDCAMELFKEMRESNCPP 477

Query: 234 NWSTLDVLIILYGYLAKGKDLERIWATVQE---LPNVRSKSYVLAIEAFGRIAQVSRAEE 290
             +T +++I L G   +   +E + + ++E   +PN+   +Y   ++ +GR  +   A +
Sbjct: 478 GTTTYNIMINLLGEQERWVGVETMMSEMKEQGLVPNI--ITYTTLVDVYGRSGRYKEAID 535

Query: 291 LWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCF 350
               M++     +   Y+++++ Y + G  D A  ++K M  +G + + +          
Sbjct: 536 CIEAMKADGLKPSPTMYHALVNAYAQRGLADHALNVVKAMRADGLEASTVVLN------- 588

Query: 351 KSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKA 410
                                              S+I  F E   V  A ++ + +K+ 
Sbjct: 589 -----------------------------------SLINAFGEDRRVVEAFSVLQFMKEN 613

Query: 411 NYTKYTFVYNTLIKAYVKAKIND--PNLLRRMILGGARPDAETYSLLKLAEQFQK 463
           ++      Y TL+KA ++ +  D  P +   MI  G  PD +  ++L+ A ++ K
Sbjct: 614 DFRPDVITYTTLMKALIRVEQFDKVPVIYEEMITSGCAPDRKARAMLRSALRYMK 668



 Score = 55.8 bits (133), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 79/392 (20%), Positives = 150/392 (38%), Gaps = 63/392 (16%)

Query: 52  VIRERPYRPKELDYSYLLEFTIKNHGISQG---EKLFCCIPKDYQNEL---LYNNLVIAC 105
           +IRE  + P    YS+LL   +           E+L   + +D + E    L+++L+ A 
Sbjct: 185 LIREHNFLPDLASYSHLLASLLNTRDPPDAAILERLLGDL-RDSRLEPDAPLFSDLISAF 243

Query: 106 LDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPN----ILRQMKADKV 161
               +   +LE +   + +G +      N +  L S+ G    +P      L    A ++
Sbjct: 244 ARAALPDAALELLASAQAIGLTPRS---NAVTALISALGIAGRVPEAEALFLEFFLAGEI 300

Query: 162 APHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAET 221
            P    ++ L+K      +++    V  +M    V P+E +Y +L  A+  A  +  A  
Sbjct: 301 KPRTRAYNALLKGYVKIGSLKNAEHVLDEMSECGVAPDEATYSLLVDAYTRAGRWESARI 360

Query: 222 YVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSKS----YVLAIE 277
            ++ +E    G   S+     IL G+  +G D ++ +A ++E+     +     Y + I+
Sbjct: 361 LLKEMEAD--GVKPSSYVFSRILAGFRDRG-DWQKAFAVLREMHASGVQPDRHFYNVMID 417

Query: 278 AFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKP 337
            FG+   +  A +++  M+          +N++I  +CK G  D A  L KEM  + C P
Sbjct: 418 TFGKYNCLGHAMDVFNRMRGEGIEPDVVTWNTLIDAHCKGGRHDCAMELFKEMRESNCPP 477

Query: 338 NAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDV 397
              TY          N+                                +I +  E+   
Sbjct: 478 GTTTY----------NI--------------------------------MINLLGEQERW 495

Query: 398 GNAENLFEELKKANYTKYTFVYNTLIKAYVKA 429
              E +  E+K+         Y TL+  Y ++
Sbjct: 496 VGVETMMSEMKEQGLVPNIITYTTLVDVYGRS 527



 Score = 55.5 bits (132), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 55/276 (19%), Positives = 114/276 (41%), Gaps = 11/276 (3%)

Query: 184 LMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLII 243
           L ++  D++ S +EP+   +  L +A A A L   A   + + +        + +  LI 
Sbjct: 217 LERLLGDLRDSRLEPDAPLFSDLISAFARAALPDAALELLASAQAIGLTPRSNAVTALIS 276

Query: 244 LYGYLAKGKDLERIWATVQELPNV--RSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQL 301
             G   +  + E ++        +  R+++Y   ++ + +I  +  AE +  EM      
Sbjct: 277 ALGIAGRVPEAEALFLEFFLAGEIKPRTRAYNALLKGYVKIGSLKNAEHVLDEMSECGVA 336

Query: 302 KATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKA 361
                Y+ ++  Y + G  + A  LLKEM  +G KP++  +  +  G       ++ F  
Sbjct: 337 PDEATYSLLVDAYTRAGRWESARILLKEMEADGVKPSSYVFSRILAGFRDRGDWQKAFAV 396

Query: 362 LELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNT 421
           L    + +    V+    +      +I+ F +   +G+A ++F  ++          +NT
Sbjct: 397 L----REMHASGVQPDRHFYNV---MIDTFGKYNCLGHAMDVFNRMRGEGIEPDVVTWNT 449

Query: 422 LIKAYVKAKINDP--NLLRRMILGGARPDAETYSLL 455
           LI A+ K   +D    L + M      P   TY+++
Sbjct: 450 LIDAHCKGGRHDCAMELFKEMRESNCPPGTTTYNIM 485


>gi|224130828|ref|XP_002328386.1| predicted protein [Populus trichocarpa]
 gi|222838101|gb|EEE76466.1| predicted protein [Populus trichocarpa]
          Length = 617

 Score = 77.4 bits (189), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 79/362 (21%), Positives = 151/362 (41%), Gaps = 50/362 (13%)

Query: 100 NLVIACLDK-GVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKA 158
           N++I CL +   +  ++  M KM  LG     + FN LI    + G+ K    +  +M  
Sbjct: 135 NVLINCLCRLSHVDFAVSVMGKMFKLGIQPDAITFNTLINGLCNEGKIKEAVGLFNEMVW 194

Query: 159 DKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTV 218
               P+V +++ ++     + N    ++V+  M+++  +PN V+Y  +  +    RL   
Sbjct: 195 SGHEPNVISYNTVINGLCKNGNTIMAVRVFRKMEQNRGKPNVVTYNTIIDSLCKDRLVNE 254

Query: 219 AETYV-EALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSKSYVLAIE 277
           A  ++ E +++ +                                  P+V + + +L   
Sbjct: 255 AVEFLSEMVDRGIP---------------------------------PDVVTYNTIL--H 279

Query: 278 AFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKP 337
            F  + Q++ A  L+ EM     +  T  +N ++   CK G + +A  + + M+  G +P
Sbjct: 280 GFCSLGQLNEATRLFKEMVGRNVMPDTVTFNILVDGLCKEGMVSEARCVSETMTEKGAEP 339

Query: 338 NAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDV 397
           NA TY  L  G    N ++E  K L + +        +   P L +   +I  + +   +
Sbjct: 340 NAYTYNALMDGYCLHNQMDEAIKVLGIMIG-------KGCAPNLSSYNILINGYCKSKRM 392

Query: 398 GNAENLFEELKKANYTKYTFVYNTLIKAYVKAKINDP----NLLRRMILGGARPDAETYS 453
             A+ L  E+ + N T  T  Y+TL++     ++  P    NL + M   G  PD   YS
Sbjct: 393 NEAKRLLSEMSEKNLTPDTVTYSTLMQGL--CQVGRPREALNLFKEMCSSGLLPDLMAYS 450

Query: 454 LL 455
           +L
Sbjct: 451 IL 452



 Score = 71.2 bits (173), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 80/405 (19%), Positives = 169/405 (41%), Gaps = 16/405 (3%)

Query: 58  YRPKELDYSYLLEFTIKNHGISQGEKLFCCIPKDY--QNELLYNNLVIACLDKGVIKLSL 115
           + P  + Y+ ++    KN       ++F  + ++    N + YN ++ +     ++  ++
Sbjct: 197 HEPNVISYNTVINGLCKNGNTIMAVRVFRKMEQNRGKPNVVTYNTIIDSLCKDRLVNEAV 256

Query: 116 EYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIE 175
           E++ +M   G     + +N ++    S G+      + ++M    V P   TF+IL+   
Sbjct: 257 EFLSEMVDRGIPPDVVTYNTILHGFCSLGQLNEATRLFKEMVGRNVMPDTVTFNILVDGL 316

Query: 176 ANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNW 235
             +  +     V   M     EPN  +Y  L   + +      A   +  +       N 
Sbjct: 317 CKEGMVSEARCVSETMTEKGAEPNAYTYNALMDGYCLHNQMDEAIKVLGIMIGKGCAPNL 376

Query: 236 STLDVLIILYGYLAKGKDLERIWATVQE---LPNVRSKSYVLAIEAFGRIAQVSRAEELW 292
           S+ ++LI  Y    +  + +R+ + + E    P+  + +Y   ++   ++ +   A  L+
Sbjct: 377 SSYNILINGYCKSKRMNEAKRLLSEMSEKNLTPD--TVTYSTLMQGLCQVGRPREALNLF 434

Query: 293 LEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKS 352
            EM S   L     Y+ ++  +CK+G +D+A  LLKEM     KPN I Y  L  G F +
Sbjct: 435 KEMCSSGLLPDLMAYSILLDGFCKHGHLDEALKLLKEMHERRIKPNIILYTILIRGMFIA 494

Query: 353 NLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANY 412
                    LE+  +L +        P + T   +I+   ++G    A   F +++   +
Sbjct: 495 G-------KLEVAKELFSKLSADGIRPDIWTYNVMIKGLLKEGLSDEAYEFFRKMEDDGF 547

Query: 413 TKYTFVYNTLIKAYVKAKINDP--NLLRRMILGGARPDAETYSLL 455
              +  YN +I+ +++ + +     L+  M+      D+ T+ +L
Sbjct: 548 LPDSCSYNVIIQGFLQNQDSSTAIQLIDEMVGKRFSADSSTFQML 592



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 81/378 (21%), Positives = 160/378 (42%), Gaps = 36/378 (9%)

Query: 94  NELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNIL 153
           + + +N L+    ++G IK ++    +M   GH  + + +N +I      G       + 
Sbjct: 165 DAITFNTLINGLCNEGKIKEAVGLFNEMVWSGHEPNVISYNTVINGLCKNGNTIMAVRVF 224

Query: 154 RQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSY-------CIL 206
           R+M+ ++  P+V T++ ++     D  +   ++  S+M    + P+ V+Y       C L
Sbjct: 225 RKMEQNRGKPNVVTYNTIIDSLCKDRLVNEAVEFLSEMVDRGIPPDVVTYNTILHGFCSL 284

Query: 207 ATAHAVARLYTVAETYVEALEKSMTGNNW--STLDVLIILYGYLAKG--KDLERIWATVQ 262
              +   RL+           K M G N    T+   I++ G   +G   +   +  T+ 
Sbjct: 285 GQLNEATRLF-----------KEMVGRNVMPDTVTFNILVDGLCKEGMVSEARCVSETMT 333

Query: 263 EL---PNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGF 319
           E    PN  + +Y   ++ +    Q+  A ++   M           YN +I+ YCK+  
Sbjct: 334 EKGAEPN--AYTYNALMDGYCLHNQMDEAIKVLGIMIGKGCAPNLSSYNILINGYCKSKR 391

Query: 320 IDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTP 379
           +++A  LL EMS     P+ +TY  L  G  +     E   AL L  ++ ++  +    P
Sbjct: 392 MNEAKRLLSEMSEKNLTPDTVTYSTLMQGLCQVGRPRE---ALNLFKEMCSSGLL----P 444

Query: 380 WLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKA-YVKAKIN-DPNLL 437
            L     +++ F + G +  A  L +E+ +        +Y  LI+  ++  K+     L 
Sbjct: 445 DLMAYSILLDGFCKHGHLDEALKLLKEMHERRIKPNIILYTILIRGMFIAGKLEVAKELF 504

Query: 438 RRMILGGARPDAETYSLL 455
            ++   G RPD  TY+++
Sbjct: 505 SKLSADGIRPDIWTYNVM 522



 Score = 39.3 bits (90), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 43/182 (23%), Positives = 76/182 (41%), Gaps = 12/182 (6%)

Query: 279 FGRIA---QVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGC 335
            G IA   Q S A  L  +M            N +I+  C+   +D A  ++ +M   G 
Sbjct: 103 LGSIAKKKQYSSAVSLCNQMDLFGVTHNVYSLNVLINCLCRLSHVDFAVSVMGKMFKLGI 162

Query: 336 KPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKG 395
           +P+AIT+  L  G     L  EG   ++  + L          P + +  ++I    + G
Sbjct: 163 QPDAITFNTLING-----LCNEG--KIKEAVGLFNEMVWSGHEPNVISYNTVINGLCKNG 215

Query: 396 DVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAK-INDP-NLLRRMILGGARPDAETYS 453
           +   A  +F ++++         YNT+I +  K + +N+    L  M+  G  PD  TY+
Sbjct: 216 NTIMAVRVFRKMEQNRGKPNVVTYNTIIDSLCKDRLVNEAVEFLSEMVDRGIPPDVVTYN 275

Query: 454 LL 455
            +
Sbjct: 276 TI 277


>gi|58013026|gb|AAW62966.1| chloroplast embryo-defective 1270 [Arabidopsis thaliana]
          Length = 1429

 Score = 77.4 bits (189), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 96/431 (22%), Positives = 174/431 (40%), Gaps = 65/431 (15%)

Query: 43  KRALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQGEKLFC-CIPKDYQNELLYNNL 101
           +RALEV EW+     + P     + +L    + +  S   ++F    P       +YN +
Sbjct: 172 QRALEVFEWLNLRHWHSPNARMVAAILGVLGRWNQESLAVEIFTRAEPTVGDRVQVYNAM 231

Query: 102 VIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNI----LRQMK 157
           +      G    + E +  MR  G     + FN LI  N+        PN+    L  ++
Sbjct: 232 MGVYSRSGKFSKAQELVDAMRQRGCVPDLISFNTLI--NARLKSGGLTPNLAVELLDMVR 289

Query: 158 ADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYT 217
              + P   T++ L+   + D N++G +KV+ DM+    +P+  +Y              
Sbjct: 290 NSGLRPDAITYNTLLSACSRDSNLDGAVKVFEDMEAHRCQPDLWTY-------------- 335

Query: 218 VAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQE---LPNVRSKSYVL 274
                                + +I +YG      + ER++  ++     P+  + +Y  
Sbjct: 336 ---------------------NAMISVYGRCGLAAEAERLFMELELKGFFPD--AVTYNS 372

Query: 275 AIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEM-SMN 333
            + AF R     + +E++ +MQ +   K    YN++I +Y K G +D A  L K+M  ++
Sbjct: 373 LLYAFARERNTEKVKEVYQQMQKMGFGKDEMTYNTIIHMYGKQGQLDLALQLYKDMKGLS 432

Query: 334 GCKPNAITYRHLALGCFKSNLVEEGF----KALELGMKLITTKKVRSSTPWLETTLSIIE 389
           G  P+AITY  L     K+N   E      + L++G+K           P L+T  ++I 
Sbjct: 433 GRNPDAITYTVLIDSLGKANRTVEAAALMSEMLDVGIK-----------PTLQTYSALIC 481

Query: 390 IFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKINDP--NLLRRMILGGARP 447
            +A+ G    AE+ F  + ++        Y+ ++   ++         L R MI  G  P
Sbjct: 482 GYAKAGKREEAEDTFSCMLRSGTKPDNLAYSVMLDVLLRGNETRKAWGLYRDMISDGHTP 541

Query: 448 DAETYSLLKLA 458
               Y L+ L 
Sbjct: 542 SYTLYELMILG 552



 Score = 49.7 bits (117), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 67/317 (21%), Positives = 125/317 (39%), Gaps = 59/317 (18%)

Query: 187  VYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYG 246
            V  ++++S   P+  ++  L +A+A    Y  A      + +   G + +   + I+L+ 
Sbjct: 774  VVGNLRQSGRTPDLKTWNSLMSAYAQCGCYERARAIFNTMMRD--GPSPTVESINILLHA 831

Query: 247  YLAKGKDLERIWATVQELPN----VRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLK 302
                G+ LE ++  V+EL +    +   S +L ++AF R   +   ++++  M++   L 
Sbjct: 832  LCVDGR-LEELYVVVEELQDMGFKISKSSILLMLDAFARAGNIFEVKKIYSSMKAAGYLP 890

Query: 303  ATEQYNSVISVYCKNGFIDKASGLLKEM-------------SM----------------- 332
                Y  +I + CK   +  A  ++ EM             SM                 
Sbjct: 891  TIRLYRMMIELLCKGKRVRDAEIMVSEMEEANFKVELAIWNSMLKMYTAIEDYKKTVQVY 950

Query: 333  -----NGCKPNAITYRHLALGCFKSNLVEEGFKALE----LGMKLITTKKVRSSTPWLET 383
                  G +P+  TY  L +   +    EEG+  ++    LG+            P L+T
Sbjct: 951  QRIKETGLEPDETTYNTLIIMYCRDRRPEEGYLLMQQMRNLGLD-----------PKLDT 999

Query: 384  TLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKINDP--NLLRRMI 441
              S+I  F ++  +  AE LFEEL           Y+T++K    +  +     LL+ M 
Sbjct: 1000 YKSLISAFGKQKCLEQAEQLFEELLSKGLKLDRSFYHTMMKISRDSGSDSKAEKLLQMMK 1059

Query: 442  LGGARPDAETYSLLKLA 458
              G  P   T  LL ++
Sbjct: 1060 NAGIEPTLATMHLLMVS 1076


>gi|334185431|ref|NP_188439.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|322510063|sp|Q5G1S8.2|PP241_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g18110, chloroplastic; AltName: Full=Protein EMBRYO
           DEFECTIVE 1270; Flags: Precursor
 gi|9294066|dbj|BAB02023.1| unnamed protein product [Arabidopsis thaliana]
 gi|332642528|gb|AEE76049.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 1440

 Score = 77.4 bits (189), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 96/431 (22%), Positives = 174/431 (40%), Gaps = 65/431 (15%)

Query: 43  KRALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQGEKLFC-CIPKDYQNELLYNNL 101
           +RALEV EW+     + P     + +L    + +  S   ++F    P       +YN +
Sbjct: 172 QRALEVFEWLNLRHWHSPNARMVAAILGVLGRWNQESLAVEIFTRAEPTVGDRVQVYNAM 231

Query: 102 VIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNI----LRQMK 157
           +      G    + E +  MR  G     + FN LI  N+        PN+    L  ++
Sbjct: 232 MGVYSRSGKFSKAQELVDAMRQRGCVPDLISFNTLI--NARLKSGGLTPNLAVELLDMVR 289

Query: 158 ADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYT 217
              + P   T++ L+   + D N++G +KV+ DM+    +P+  +Y              
Sbjct: 290 NSGLRPDAITYNTLLSACSRDSNLDGAVKVFEDMEAHRCQPDLWTY-------------- 335

Query: 218 VAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQE---LPNVRSKSYVL 274
                                + +I +YG      + ER++  ++     P+  + +Y  
Sbjct: 336 ---------------------NAMISVYGRCGLAAEAERLFMELELKGFFPD--AVTYNS 372

Query: 275 AIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEM-SMN 333
            + AF R     + +E++ +MQ +   K    YN++I +Y K G +D A  L K+M  ++
Sbjct: 373 LLYAFARERNTEKVKEVYQQMQKMGFGKDEMTYNTIIHMYGKQGQLDLALQLYKDMKGLS 432

Query: 334 GCKPNAITYRHLALGCFKSNLVEEGF----KALELGMKLITTKKVRSSTPWLETTLSIIE 389
           G  P+AITY  L     K+N   E      + L++G+K           P L+T  ++I 
Sbjct: 433 GRNPDAITYTVLIDSLGKANRTVEAAALMSEMLDVGIK-----------PTLQTYSALIC 481

Query: 390 IFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKINDP--NLLRRMILGGARP 447
            +A+ G    AE+ F  + ++        Y+ ++   ++         L R MI  G  P
Sbjct: 482 GYAKAGKREEAEDTFSCMLRSGTKPDNLAYSVMLDVLLRGNETRKAWGLYRDMISDGHTP 541

Query: 448 DAETYSLLKLA 458
               Y L+ L 
Sbjct: 542 SYTLYELMILG 552



 Score = 49.7 bits (117), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 67/317 (21%), Positives = 125/317 (39%), Gaps = 59/317 (18%)

Query: 187  VYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYG 246
            V  ++++S   P+  ++  L +A+A    Y  A      + +   G + +   + I+L+ 
Sbjct: 774  VVGNLRQSGRTPDLKTWNSLMSAYAQCGCYERARAIFNTMMRD--GPSPTVESINILLHA 831

Query: 247  YLAKGKDLERIWATVQELPN----VRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLK 302
                G+ LE ++  V+EL +    +   S +L ++AF R   +   ++++  M++   L 
Sbjct: 832  LCVDGR-LEELYVVVEELQDMGFKISKSSILLMLDAFARAGNIFEVKKIYSSMKAAGYLP 890

Query: 303  ATEQYNSVISVYCKNGFIDKASGLLKEM-------------SM----------------- 332
                Y  +I + CK   +  A  ++ EM             SM                 
Sbjct: 891  TIRLYRMMIELLCKGKRVRDAEIMVSEMEEANFKVELAIWNSMLKMYTAIEDYKKTVQVY 950

Query: 333  -----NGCKPNAITYRHLALGCFKSNLVEEGFKALE----LGMKLITTKKVRSSTPWLET 383
                  G +P+  TY  L +   +    EEG+  ++    LG+            P L+T
Sbjct: 951  QRIKETGLEPDETTYNTLIIMYCRDRRPEEGYLLMQQMRNLGLD-----------PKLDT 999

Query: 384  TLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKIND--PNLLRRMI 441
              S+I  F ++  +  AE LFEEL           Y+T++K    +  +     LL+ M 
Sbjct: 1000 YKSLISAFGKQKCLEQAEQLFEELLSKGLKLDRSFYHTMMKISRDSGSDSKAEKLLQMMK 1059

Query: 442  LGGARPDAETYSLLKLA 458
              G  P   T  LL ++
Sbjct: 1060 NAGIEPTLATMHLLMVS 1076


>gi|224133408|ref|XP_002321560.1| predicted protein [Populus trichocarpa]
 gi|222868556|gb|EEF05687.1| predicted protein [Populus trichocarpa]
          Length = 491

 Score = 77.4 bits (189), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 74/304 (24%), Positives = 134/304 (44%), Gaps = 32/304 (10%)

Query: 165 VSTFHILMKIEANDHNIE---GLMKVYSDMKRSEVEPNEVSYCILATAHA-VARLYTVAE 220
           + +F+ ++ +      +E    L KV+    R++     VSY ++      + R     E
Sbjct: 171 LQSFNTILDVLCKSKRVEMAYNLFKVFKGKFRADC----VSYNVMVNGWCLIKRTNKALE 226

Query: 221 TYVEALEKSMTGN--NWSTLDVLIILYGYLAKGKDLERIWATVQELPN----VRSKSYVL 274
              E +++ +T N  +++T+     L GY   G+ +   W    E+      +   +Y  
Sbjct: 227 MLKEMVKRGLTPNLTSYNTM-----LKGYFRAGQ-INEAWDFFLEMKKRDCEIDVITYTT 280

Query: 275 AIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNG 334
            I  FG   ++ RA +++  M     L +   YN+ I V CK   +D A  + +EM + G
Sbjct: 281 VIHGFGVAGEIKRARKVFDTMVKKGVLPSVATYNAFIQVLCKKDNVDNAIVIFEEMVVKG 340

Query: 335 CKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEK 394
             PN+ITY  +  G     L   G   +E  M+ +   K     P ++T   +I  F ++
Sbjct: 341 YVPNSITYNLVIRG-----LCHRG--EMERAMEFMGRMKDDGCEPNVQTYNLVIRYFCDE 393

Query: 395 GDVGNAENLFEELKKANYTKYTFVYNTLIKA-YVKAKIND----PNLLRRMILGGARPDA 449
           G++  A +LF+++   +       YN LI A +V+ K +D     NLL  M+  G  P  
Sbjct: 394 GEIDKALDLFQKMTSGDCLPNLDTYNILISAMFVRKKSDDLLVAGNLLIEMVDRGFVPRK 453

Query: 450 ETYS 453
            T++
Sbjct: 454 FTFN 457



 Score = 55.1 bits (131), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 47/205 (22%), Positives = 87/205 (42%), Gaps = 11/205 (5%)

Query: 152 ILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHA 211
           +L++M    + P++++++ ++K       I      + +MK+ + E + ++Y  +     
Sbjct: 227 MLKEMVKRGLTPNLTSYNTMLKGYFRAGQINEAWDFFLEMKKRDCEIDVITYTTVIHGFG 286

Query: 212 VARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQEL------P 265
           VA     A    + + K     + +T +  I +   L K  +++      +E+      P
Sbjct: 287 VAGEIKRARKVFDTMVKKGVLPSVATYNAFIQV---LCKKDNVDNAIVIFEEMVVKGYVP 343

Query: 266 NVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASG 325
           N  S +Y L I       ++ RA E    M+        + YN VI  +C  G IDKA  
Sbjct: 344 N--SITYNLVIRGLCHRGEMERAMEFMGRMKDDGCEPNVQTYNLVIRYFCDEGEIDKALD 401

Query: 326 LLKEMSMNGCKPNAITYRHLALGCF 350
           L ++M+   C PN  TY  L    F
Sbjct: 402 LFQKMTSGDCLPNLDTYNILISAMF 426


>gi|302763357|ref|XP_002965100.1| hypothetical protein SELMODRAFT_83796 [Selaginella moellendorffii]
 gi|300167333|gb|EFJ33938.1| hypothetical protein SELMODRAFT_83796 [Selaginella moellendorffii]
          Length = 603

 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 90/416 (21%), Positives = 181/416 (43%), Gaps = 27/416 (6%)

Query: 60  PKELDYSYLLEFTIKNHGISQGEKLFC-CIPKDYQNELL-YNNLVIACLDKGVIKLSLEY 117
           P    Y+ L++   K H + +   +F   I K Y+ +++ Y++L+      G +  + + 
Sbjct: 196 PTLFTYTVLVDGLCKAHKVERACDVFEEMIRKGYKPDIIAYSSLIDGLSKAGRVDEARKL 255

Query: 118 MKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEAN 177
           +  M   G   + + +  ++      GR +     +++M+  ++ P V T+  ++     
Sbjct: 256 VDLMVARGPPPTAVAYTSIVAGLCKCGRIQEAVKTIQEMRRRRLRPRVDTYSFIVTGYIG 315

Query: 178 DHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTV-----AETYVEALEKSMTG 232
              +E    V  +M   +  P+ +SY +   A     LY++     AE   E + +    
Sbjct: 316 MGKVEKAFAVMEEMADRDCAPDTISYTMFIEA-----LYSIGRREEAEKVFETMVEKGCK 370

Query: 233 NNWSTLDVLIILY---GYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAE 289
            +  T  ++I  +   G +A    + R+       PN     Y + ++ F + +++  A 
Sbjct: 371 PDMHTYGIIIDNFCKEGSMAAATHVLRLMDKAAVKPN--RYIYTMIMDGFVKSSRLEEAL 428

Query: 290 ELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNG--CKPNAITYRHLAL 347
           EL+  +     L +T  YN+VI+  CK   +D+A  LL+EM       +P+ +TY  +  
Sbjct: 429 ELYQRILKDGILPSTVTYNTVINALCKLKKMDEALELLREMQRRKEELEPSIVTYSMIIH 488

Query: 348 GCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEEL 407
           G  K  + E   +A +L  ++I    +    P   T  S+I+  A  G V  A  L EE+
Sbjct: 489 GLGKVGMEE---RAFDLLAEMIDNGVI----PDCFTYTSLIQTLAGAGKVSRAMELLEEM 541

Query: 408 KKANYTKYTFVYNTLIKAYVKAKINDP-NLLRRMILGGARPDAETYSLLKLAEQFQ 462
            KA        Y TL++   ++ ++   +LL+ M+  G  P+  T+  ++   + Q
Sbjct: 542 LKAGIFPDDHTYGTLVQILCRSDVDAAWDLLQEMMRNGHTPNEFTFKAVEKGFRLQ 597



 Score = 62.0 bits (149), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 64/329 (19%), Positives = 143/329 (43%), Gaps = 20/329 (6%)

Query: 133 FNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMK 192
           FN L+   ++    + +  +LR+MK+  +  + +T  +++       +++  +  ++ + 
Sbjct: 131 FNILLRGFAARDDFEVVNALLREMKSRGITSNGATHGVILSALCARRDLDKAVSYFNSVS 190

Query: 193 RSEVEPNEVSYCILAT----AHAVARLYTVAETYVEALEKSMTGN--NWSTLDVLIILYG 246
            ++ EP   +Y +L      AH V R   V E   E + K    +   +S+L   +   G
Sbjct: 191 PNKCEPTLFTYTVLVDGLCKAHKVERACDVFE---EMIRKGYKPDIIAYSSLIDGLSKAG 247

Query: 247 YLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQ 306
            + + + L  +   V   P   + +Y   +    +  ++  A +   EM+  +     + 
Sbjct: 248 RVDEARKL--VDLMVARGPPPTAVAYTSIVAGLCKCGRIQEAVKTIQEMRRRRLRPRVDT 305

Query: 307 YNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGM 366
           Y+ +++ Y   G ++KA  +++EM+   C P+ I+Y       +     EE  K  E   
Sbjct: 306 YSFIVTGYIGMGKVEKAFAVMEEMADRDCAPDTISYTMFIEALYSIGRREEAEKVFE--- 362

Query: 367 KLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAY 426
               T   +   P + T   II+ F ++G +  A ++   + KA      ++Y  ++  +
Sbjct: 363 ----TMVEKGCKPDMHTYGIIIDNFCKEGSMAAATHVLRLMDKAAVKPNRYIYTMIMDGF 418

Query: 427 VK-AKINDP-NLLRRMILGGARPDAETYS 453
           VK +++ +   L +R++  G  P   TY+
Sbjct: 419 VKSSRLEEALELYQRILKDGILPSTVTYN 447


>gi|449503889|ref|XP_004162218.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g16890, mitochondrial-like [Cucumis sativus]
          Length = 697

 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 109/456 (23%), Positives = 185/456 (40%), Gaps = 50/456 (10%)

Query: 14  FQSWMREGFPVHRGEIFHSINRLRKLQLNKRALEVMEWVIRERPYRPKELDYSYLLEFTI 73
           F SW R G   +  E+F  I  L      +    VM+ +I+        LD +YL    +
Sbjct: 201 FGSWGRLGLANYCVEVFGQIGLLGLNPTTRLYNAVMDALIKS-----NSLDLAYLKFQQM 255

Query: 74  KNHGISQGEKLFCCIPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVF 133
            +H          C+P  +     YN L+      GV+  +L  MK+M  LG+  +   +
Sbjct: 256 SSHN---------CVPDRFT----YNILIHGVCRLGVVDEALRLMKQMEGLGYFPNVFTY 302

Query: 134 NRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTF----HILMKIEANDHNIEGLMK-VY 188
             LI    +  R      +L+ MK   V P+ +T     H + +  A D   E L++ V 
Sbjct: 303 TILIDGFFNAKRAGEAFKVLQTMKERNVVPNEATMRSLVHGVFRCIAPDKAFELLLEFVE 362

Query: 189 SDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYL 248
                +++  + + YC+   + A   +  + +T  E    S +  N +   VL       
Sbjct: 363 RKQGITQLVCDNILYCLSNNSMASEAVMFLIKTGKEGYVPSSSTFNITLACVL------- 415

Query: 249 AKGKDLERIWAT----VQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKAT 304
            K  DL+         VQ        +Y+  IEA  +  ++         + +   +   
Sbjct: 416 -KKLDLKVTCTVFDNCVQSGVKPGFSTYLTLIEALYKAGKMEIGNRYMDRLINDGLISNI 474

Query: 305 EQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALG-CFKSNLVEEGFKALE 363
             YN VI   CK   +D+AS + +++   G  PN +TY  L  G C   N+     KA E
Sbjct: 475 YSYNMVIDCLCKGKSMDRASEMFRDLHNRGISPNIVTYNTLIGGFCRNGNMD----KAQE 530

Query: 364 LGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLI 423
           L ++++   + R   P + T  S+I+   +     NA   F E+ + +       YN LI
Sbjct: 531 L-LEMLLESRFR---PDIFTFNSLIDGLCQAHKHENAFGCFTEMVEWDVPPNVITYNILI 586

Query: 424 KAYVKAKIND----PNLLRRMILGGARPDAETYSLL 455
            ++    I D     +LLR+M L G +PD  +++ L
Sbjct: 587 CSF--CAIGDVSRSTHLLRQMKLHGIQPDTFSFNAL 620



 Score = 50.8 bits (120), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 52/243 (21%), Positives = 91/243 (37%), Gaps = 35/243 (14%)

Query: 100 NLVIACLDKG-VIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKA 158
           N+VI CL KG  +  + E  + +   G S + + +N LI      G       +L  +  
Sbjct: 478 NMVIDCLCKGKSMDRASEMFRDLHNRGISPNIVTYNTLIGGFCRNGNMDKAQELLEMLLE 537

Query: 159 DKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTV 218
            +  P + TF+ L+      H  E     +++M   +V PN ++Y IL  +     +  V
Sbjct: 538 SRFRPDIFTFNSLIDGLCQAHKHENAFGCFTEMVEWDVPPNVITYNILICSFCA--IGDV 595

Query: 219 AETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSKSYVLAIEA 278
           + +     +  + G    T     ++ GY  K +                          
Sbjct: 596 SRSTHLLRQMKLHGIQPDTFSFNALIQGYTGKNR-------------------------- 629

Query: 279 FGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPN 338
                   +AE+L+  M  +        Y ++I   CK+G  DKA  +   M  NGC P+
Sbjct: 630 ------FQKAEKLFDSMLRLGIQPDNYTYGALIKSLCKSGRHDKAREIFLSMKENGCTPD 683

Query: 339 AIT 341
           + T
Sbjct: 684 SYT 686


>gi|30689969|ref|NP_197945.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|357528836|sp|Q8GZ63.2|PP397_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g25630
 gi|332006092|gb|AED93475.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 574

 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 84/376 (22%), Positives = 169/376 (44%), Gaps = 22/376 (5%)

Query: 94  NELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLII---LNSSPGRRKTIP 150
           + + +N ++ A  + G ++ +++ + KM+ LG + +   +N LI    +   P R   + 
Sbjct: 114 DSIFFNAVINAFSESGNMEDAVQALLKMKELGLNPTTSTYNTLIKGYGIAGKPERSSELL 173

Query: 151 NILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAH 210
           +++ +     V P++ TF++L++       +E   +V   M+   V P+ V+Y  +AT +
Sbjct: 174 DLMLEEGNVDVGPNIRTFNVLVQAWCKKKKVEEAWEVVKKMEECGVRPDTVTYNTIATCY 233

Query: 211 AVARLYTVAETYV--EALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVR 268
                   AE+ V  + + K     N  T  +++  Y    + +D  R    V+ +  +R
Sbjct: 234 VQKGETVRAESEVVEKMVMKEKAKPNGRTCGIVVGGYCREGRVRDGLRF---VRRMKEMR 290

Query: 269 SKSYVLA----IEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKAS 324
            ++ ++     I  F  +      +E+   M+          Y++V++ +   G+++KA+
Sbjct: 291 VEANLVVFNSLINGFVEVMDRDGIDEVLTLMKECNVKADVITYSTVMNAWSSAGYMEKAA 350

Query: 325 GLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETT 384
            + KEM   G KP+A  Y  LA G  ++   +E  KA EL   LI       S P +   
Sbjct: 351 QVFKEMVKAGVKPDAHAYSILAKGYVRA---KEPKKAEELLETLIV-----ESRPNVVIF 402

Query: 385 LSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAY--VKAKINDPNLLRRMIL 442
            ++I  +   G + +A  +F ++ K   +     + TL+  Y  VK       +L+ M  
Sbjct: 403 TTVISGWCSNGSMDDAMRVFNKMCKFGVSPNIKTFETLMWGYLEVKQPWKAEEVLQMMRG 462

Query: 443 GGARPDAETYSLLKLA 458
            G +P+  T+ LL  A
Sbjct: 463 CGVKPENSTFLLLAEA 478


>gi|357115764|ref|XP_003559656.1| PREDICTED: protein Rf1, mitochondrial-like [Brachypodium
           distachyon]
          Length = 867

 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 85/408 (20%), Positives = 171/408 (41%), Gaps = 36/408 (8%)

Query: 44  RALEVMEWVIR---ERPYRPKELDYSYLLEFTIKNHGIS------QGEKLFCCIPKDYQN 94
           RA++  E V+R   +   +P E+ Y+ ++      HG S      +  K+F    K+   
Sbjct: 321 RAMDKAELVLRQMFDNSIQPDEVTYTAMI------HGYSCLGRWKEAAKMF----KEMTR 370

Query: 95  ELL------YNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKT 148
           E L      +N+L+ +       K + E    +   GH    + ++ L+   ++ GR   
Sbjct: 371 EGLIPDIVTFNSLMDSLCKHKRSKEAAEIFHSIATKGHKPDIISYSILLHGYATEGRFVD 430

Query: 149 IPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYC-ILA 207
           + N+   M  + +      F+IL+   A    ++  + ++++M+   V PN V+Y  ++A
Sbjct: 431 MNNLFHSMTDNGIVADSHCFNILINAHAKRGMMDEALLIFTEMRGQGVSPNVVTYATVIA 490

Query: 208 TAHAVARLYTVAETYVEALEKSMTGNN--WSTLDVLIILYGYLAKGKDLERIWATVQELP 265
               + RL    E   + +   +  N   + +L      +G L K K+L       Q +P
Sbjct: 491 ALCRMGRLADAMEKLSQMISIGLKPNTVVYHSLIQGFCTHGDLIKAKELVSEMMD-QGIP 549

Query: 266 NVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASG 325
                 +   I +     +V  A++++  +  +        +NS+I  YC  G +DKA G
Sbjct: 550 RPNITFFSSIIHSLCNEGRVMNAQDVFNLVIHIGDRPDIFTFNSLIDGYCLVGKMDKAFG 609

Query: 326 LLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTL 385
           +L  M   G +P+ +TY  L  G FKS  +++G     +  + +  K+V+   P   T  
Sbjct: 610 VLDAMVSAGTEPDVVTYSTLINGYFKSGRIDDGL----ILFREMLCKRVK---PTTVTYS 662

Query: 386 SIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKIND 433
            +++     G    A+ +F E+ ++        Y  +++   +    D
Sbjct: 663 LVLDGLFRAGRTSAAKKMFHEMIESGTAMSISTYTIILQGLCRNNCTD 710



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 96/431 (22%), Positives = 175/431 (40%), Gaps = 35/431 (8%)

Query: 42  NKRALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQGEKLFCCIPKD--YQNELLYN 99
           ++ AL+++  + +     P  + Y+ ++        IS+   LF  + +     N + YN
Sbjct: 252 SQEALDMLLRMTKGDGCSPDVVSYTMVIHGLFMEGEISKACNLFNEMVQKGVVPNVVTYN 311

Query: 100 NLVIA-----CLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILR 154
           ++V A      +DK   +L L  M    +    ++Y     +I   S  GR K    + +
Sbjct: 312 SIVHALCKARAMDKA--ELVLRQMFDNSIQPDEVTY---TAMIHGYSCLGRWKEAAKMFK 366

Query: 155 QMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVAR 214
           +M  + + P + TF+ LM         +   +++  +     +P+ +SY IL   +A   
Sbjct: 367 EMTREGLIPDIVTFNSLMDSLCKHKRSKEAAEIFHSIATKGHKPDIISYSILLHGYATEG 426

Query: 215 LYTVAETYVEALEKSMTGNNW-STLDVLIILYGYLAKGKDLERIWATVQEL------PNV 267
            +      +  L  SMT N   +      IL    AK   ++       E+      PNV
Sbjct: 427 RFV----DMNNLFHSMTDNGIVADSHCFNILINAHAKRGMMDEALLIFTEMRGQGVSPNV 482

Query: 268 RSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLL 327
              +Y   I A  R+ +++ A E   +M S+     T  Y+S+I  +C +G + KA  L+
Sbjct: 483 --VTYATVIAALCRMGRLADAMEKLSQMISIGLKPNTVVYHSLIQGFCTHGDLIKAKELV 540

Query: 328 KEMSMNGC-KPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLS 386
            EM   G  +PN   +  +         V        L + +          P + T  S
Sbjct: 541 SEMMDQGIPRPNITFFSSIIHSLCNEGRVMNAQDVFNLVIHI-------GDRPDIFTFNS 593

Query: 387 IIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKA-KINDPNLL-RRMILGG 444
           +I+ +   G +  A  + + +  A        Y+TLI  Y K+ +I+D  +L R M+   
Sbjct: 594 LIDGYCLVGKMDKAFGVLDAMVSAGTEPDVVTYSTLINGYFKSGRIDDGLILFREMLCKR 653

Query: 445 ARPDAETYSLL 455
            +P   TYSL+
Sbjct: 654 VKPTTVTYSLV 664



 Score = 52.0 bits (123), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 44/151 (29%), Positives = 68/151 (45%), Gaps = 9/151 (5%)

Query: 308 NSVISVYCKNGFIDKA-SGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGM 366
           N+ +   C     D+A S LL  MS  GC P+A +Y  +       +  +E      L M
Sbjct: 204 NTFLKCLCYAKRTDEALSMLLHRMSELGCVPDAFSYNTVIKSLCGGSRSQEA-----LDM 258

Query: 367 KLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAY 426
            L  TK    S   +  T+ I  +F E G++  A NLF E+ +         YN+++ A 
Sbjct: 259 LLRMTKGDGCSPDVVSYTMVIHGLFME-GEISKACNLFNEMVQKGVVPNVVTYNSIVHAL 317

Query: 427 VKAKINDPN--LLRRMILGGARPDAETYSLL 455
            KA+  D    +LR+M     +PD  TY+ +
Sbjct: 318 CKARAMDKAELVLRQMFDNSIQPDEVTYTAM 348


>gi|302761794|ref|XP_002964319.1| hypothetical protein SELMODRAFT_63559 [Selaginella moellendorffii]
 gi|300168048|gb|EFJ34652.1| hypothetical protein SELMODRAFT_63559 [Selaginella moellendorffii]
          Length = 384

 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 80/346 (23%), Positives = 150/346 (43%), Gaps = 12/346 (3%)

Query: 114 SLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMK 173
           +L  ++ M+  G     +++N L+    + GR +    IL  MK DKV+ ++ T+  L+K
Sbjct: 37  ALRLLEVMKESGKKPDEILYNCLVNGLVNSGRLEAAEKILDDMKQDKVSANLVTYTNLIK 96

Query: 174 IEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGN 233
             AN   ++   K++ +MK     PN  +Y  L   +    L+  A    + ++      
Sbjct: 97  EYANAGRLQDCRKLFQEMKDKGESPNSWTYNALIQGYGRKGLFKEALELYDEMDGVGCAK 156

Query: 234 NWSTLDVLIILYGYLAKGKDLERIW--ATVQELPNVRSKSYVLAIEAFGRIAQVSRAEEL 291
           +  T ++ I +YG     +D+ER+      + +P  +  +Y   ++ + + +   +A E+
Sbjct: 157 DVHTYNIAIAMYGKRGLLEDMERLLDEMDTKGVPPDQV-TYNTLLDVYAKKSYFVKAHEI 215

Query: 292 WLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFK 351
             EM           YN ++S   K   + +A+ L + +   G  PN +TY  +     +
Sbjct: 216 LREMTEAGYRPNIWTYNIMLSSARKEQSVAEATQLFENLKSKGVVPNIVTYSAMLSLYGR 275

Query: 352 SNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKAN 411
             L  E   A +L  ++I         P +     +IE +   G    A   F++++K+ 
Sbjct: 276 HGLYTE---AAKLWDEMIEA----GCIPCIIAYSGLIESYGHHGMYQEALACFQDMRKSG 328

Query: 412 YTKYTFVYNTLIKAYVKA-KINDPNLLR-RMILGGARPDAETYSLL 455
               T +Y  L+ AY KA +  +  LL   M   G  PD  TY +L
Sbjct: 329 IVPDTKIYTALMDAYGKAGRCREAELLYFEMTKEGFVPDGITYGIL 374



 Score = 60.8 bits (146), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 56/250 (22%), Positives = 103/250 (41%), Gaps = 1/250 (0%)

Query: 94  NELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNIL 153
           N   YN L+     KG+ K +LE   +M  +G +     +N  I +    G  + +  +L
Sbjct: 122 NSWTYNALIQGYGRKGLFKEALELYDEMDGVGCAKDVHTYNIAIAMYGKRGLLEDMERLL 181

Query: 154 RQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVA 213
            +M    V P   T++ L+ + A         ++  +M  +   PN  +Y I+ ++    
Sbjct: 182 DEMDTKGVPPDQVTYNTLLDVYAKKSYFVKAHEILREMTEAGYRPNIWTYNIMLSSARKE 241

Query: 214 RLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRS-KSY 272
           +    A    E L+      N  T   ++ LYG      +  ++W  + E   +    +Y
Sbjct: 242 QSVAEATQLFENLKSKGVVPNIVTYSAMLSLYGRHGLYTEAAKLWDEMIEAGCIPCIIAY 301

Query: 273 VLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSM 332
              IE++G       A   + +M+    +  T+ Y +++  Y K G   +A  L  EM+ 
Sbjct: 302 SGLIESYGHHGMYQEALACFQDMRKSGIVPDTKIYTALMDAYGKAGRCREAELLYFEMTK 361

Query: 333 NGCKPNAITY 342
            G  P+ ITY
Sbjct: 362 EGFVPDGITY 371


>gi|242062032|ref|XP_002452305.1| hypothetical protein SORBIDRAFT_04g023380 [Sorghum bicolor]
 gi|241932136|gb|EES05281.1| hypothetical protein SORBIDRAFT_04g023380 [Sorghum bicolor]
          Length = 347

 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 71/310 (22%), Positives = 135/310 (43%), Gaps = 16/310 (5%)

Query: 152 ILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHA 211
           +L +M+    AP + T+++++     +  ++  M+   ++     EPN VSY I+     
Sbjct: 3   LLDEMRDKGCAPDIITYNVVLNGICQEGRVDDAMEFLENLPSYGGEPNTVSYNIVLKGLF 62

Query: 212 VARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELP----NV 267
            A  +  AE  +E +       N  T ++LI    +L +   +E     ++++P      
Sbjct: 63  TAERWEDAEKLMEEMAHKGCPPNVVTFNMLI---SFLCRRGLVEPAMEVLEQIPKYGCTP 119

Query: 268 RSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLL 327
            S SY   + AF +  ++ +A      M S         YN++++  C+NG +D A  LL
Sbjct: 120 NSLSYNPLLHAFCKQKKMDKAMAFVELMVSRGCYPDIVSYNTLLTALCRNGEVDVAIDLL 179

Query: 328 KEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSI 387
            ++   GC P  I+Y  +  G  K+   +E   ALEL  ++I+    +   P + T  +I
Sbjct: 180 HQLKGKGCSPVLISYNTVIDGLTKAGKTKE---ALELLDEMIS----KGLQPDIITYTTI 232

Query: 388 IEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAK--INDPNLLRRMILGGA 445
                 +  +  A   F +++         +YN ++    K +   N  +L   MI  G 
Sbjct: 233 ASGLCREDKIEEAIRTFCKVQDMGIRPTVVLYNAILLGLCKRRETHNAIDLFSYMISNGC 292

Query: 446 RPDAETYSLL 455
            P+  TY++L
Sbjct: 293 MPNESTYTIL 302



 Score = 48.1 bits (113), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 54/267 (20%), Positives = 108/267 (40%), Gaps = 34/267 (12%)

Query: 96  LLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQ 155
           + YN ++     +G +  ++E+++ +   G   + + +N ++    +  R +    ++ +
Sbjct: 17  ITYNVVLNGICQEGRVDDAMEFLENLPSYGGEPNTVSYNIVLKGLFTAERWEDAEKLMEE 76

Query: 156 MKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARL 215
           M      P+V TF++L+        +E  M+V   + +    PN +SY  L  A    + 
Sbjct: 77  MAHKGCPPNVVTFNMLISFLCRRGLVEPAMEVLEQIPKYGCTPNSLSYNPLLHAFCKQKK 136

Query: 216 YTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSKSYVLA 275
              A  +VE +                     +++G             P++ S + +L 
Sbjct: 137 MDKAMAFVELM---------------------VSRGC-----------YPDIVSYNTLLT 164

Query: 276 IEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGC 335
             A  R  +V  A +L  +++          YN+VI    K G   +A  LL EM   G 
Sbjct: 165 --ALCRNGEVDVAIDLLHQLKGKGCSPVLISYNTVIDGLTKAGKTKEALELLDEMISKGL 222

Query: 336 KPNAITYRHLALGCFKSNLVEEGFKAL 362
           +P+ ITY  +A G  + + +EE  +  
Sbjct: 223 QPDIITYTTIASGLCREDKIEEAIRTF 249


>gi|357499785|ref|XP_003620181.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355495196|gb|AES76399.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 559

 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 83/391 (21%), Positives = 162/391 (41%), Gaps = 50/391 (12%)

Query: 105 CLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPH 164
           CL KG I  +L++  K+  LG  ++ + +  LI      G+      +LR++    V P+
Sbjct: 153 CL-KGQIHQALQFHDKVVALGFHLNKVSYGTLINGLCKVGQTSAALQLLRRVDGKLVQPN 211

Query: 165 VSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHA-VARLYTVAETYV 223
           V  ++ ++        +     +YS+M    + P+ V+Y  L +    V ++    + + 
Sbjct: 212 VVMYNTIIDSMCKVKLVNEAFDLYSEMVSKGISPDVVTYNALISGFCIVGKMKDATDLFN 271

Query: 224 EALEKSMTGNNWS----------------------------------TLDVLIILYGYLA 249
           + + +++  N ++                                  T + L+  Y  + 
Sbjct: 272 KMIFENINPNVYTFNILVDGFCKERRLKEAKNVLAMMMKQGIKPDVFTYNSLMDRYCLVK 331

Query: 250 KGKDLERIWATVQEL---PNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQ 306
           +    + I+ T+ +    PN+ S  Y + I  F +I +V  A  L+ EM     +     
Sbjct: 332 EVNKAKHIFNTISQRGVNPNIHS--YSIMIHGFCKIKKVDEAMNLFKEMHCNNIIPDVVT 389

Query: 307 YNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGM 366
           YNS+I   CK G I  A  L+ EM   G   + ITY  +     K++ V++        +
Sbjct: 390 YNSLIDGLCKLGKISYALKLVDEMHDRGVPHDKITYNSILDALCKNHQVDK-------AI 442

Query: 367 KLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAY 426
            L+T  K     P + T  ++++   + G + +A  +FE+L    Y     +Y  +I+ +
Sbjct: 443 ALLTKMKDEGIQPDICTYTTLVDGLCKNGRLEDARIVFEDLLVKGYILDVNIYTAMIQGF 502

Query: 427 VKAKINDP--NLLRRMILGGARPDAETYSLL 455
               + D   +LL +M   G  P+A TY ++
Sbjct: 503 CSHGLFDESLDLLSKMEENGCIPNAVTYEII 533



 Score = 47.0 bits (110), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 81/394 (20%), Positives = 156/394 (39%), Gaps = 54/394 (13%)

Query: 21  GFPVHRGEIFHSINRLRKLQLNKRALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQ 80
           GF +++      IN L K+     AL+++  V   +  +P  + Y+ +++   K   +++
Sbjct: 172 GFHLNKVSYGTLINGLCKVGQTSAALQLLRRV-DGKLVQPNVVMYNTIIDSMCKVKLVNE 230

Query: 81  GEKLFC-CIPKDYQNELL-YNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLII 138
              L+   + K    +++ YN L+      G +K + +   KM     + +   FN L+ 
Sbjct: 231 AFDLYSEMVSKGISPDVVTYNALISGFCIVGKMKDATDLFNKMIFENINPNVYTFNILVD 290

Query: 139 LNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEP 198
                 R K   N+L  M    + P V T++ LM        +     +++ + +  V P
Sbjct: 291 GFCKERRLKEAKNVLAMMMKQGIKPDVFTYNSLMDRYCLVKEVNKAKHIFNTISQRGVNP 350

Query: 199 NEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNW--------STLDVLIIL------ 244
           N  SY I+   H   ++  V E     L K M  NN         S +D L  L      
Sbjct: 351 NIHSYSIMI--HGFCKIKKVDEAM--NLFKEMHCNNIIPDVVTYNSLIDGLCKLGKISYA 406

Query: 245 ----------------------YGYLAKGKDLERIWATVQEL------PNVRSKSYVLAI 276
                                    L K   +++  A + ++      P++ +  Y   +
Sbjct: 407 LKLVDEMHDRGVPHDKITYNSILDALCKNHQVDKAIALLTKMKDEGIQPDICT--YTTLV 464

Query: 277 EAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCK 336
           +   +  ++  A  ++ ++     +     Y ++I  +C +G  D++  LL +M  NGC 
Sbjct: 465 DGLCKNGRLEDARIVFEDLLVKGYILDVNIYTAMIQGFCSHGLFDESLDLLSKMEENGCI 524

Query: 337 PNAITYRHLALGCFKSNLVEEGFKALELGMKLIT 370
           PNA+TY  +    F     +E  KA +L  ++IT
Sbjct: 525 PNAVTYEIIICSLFDK---DENDKAEKLLREMIT 555


>gi|388521091|gb|AFK48607.1| unknown [Medicago truncatula]
          Length = 506

 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 72/311 (23%), Positives = 124/311 (39%), Gaps = 55/311 (17%)

Query: 98  YNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMK 157
           Y+ L+      G +K +++   KM +         FN L+      GR K   N+L  M 
Sbjct: 246 YSALIRGFFIVGKLKDAIDLFNKMILENIKPDVYTFNILVDGFCKEGRLKKAKNVLDMMM 305

Query: 158 ADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYT 217
              + P+VSTF+ L+     D  ++    V++ M +  ++PN V+YC L   + + +   
Sbjct: 306 IQDIKPNVSTFNTLVDGFCKDRKMKEGKTVFAMMMKQGIKPNVVTYCSLMDGYCLVKQVN 365

Query: 218 VAETYVEAL-EKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSKSYVLAI 276
            A+     + ++ +T N                                     SY + I
Sbjct: 366 KAKKIFNTMSQRGVTAN-----------------------------------VHSYNIMI 390

Query: 277 EAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCK 336
             F +I +V +A +L++EM     +     YNS+I   CK+G I  A  L+ EM   G  
Sbjct: 391 NGFCKIKKVDKAMKLFIEMHHKHIIPDVVTYNSLIDGLCKSGKISYAFQLVNEMHDRGQP 450

Query: 337 PNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGD 396
           PN ITY  + L    + L ++G +                  P + T   +I+   + G 
Sbjct: 451 PNIITYNSI-LNALLTKLKDQGIQ------------------PNMHTDTILIKGLCQSGK 491

Query: 397 VGNAENLFEEL 407
           +  A  +FE+L
Sbjct: 492 LEAARKVFEDL 502



 Score = 57.4 bits (137), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 74/360 (20%), Positives = 151/360 (41%), Gaps = 35/360 (9%)

Query: 105 CLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPH 164
           CL KG I  +L +  K+  LG  +  + +  LI      G  +    +LR++    V  +
Sbjct: 149 CL-KGQIHQALNFHDKLVALGFHLDQVSYGTLINGLCKVGETRAALQLLRRVDGKLVQLN 207

Query: 165 VSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATA-HAVARLYTVAETYV 223
              ++ ++   + D ++     +YS+M    + P+ V+Y  L      V +L    + + 
Sbjct: 208 AVMYNTVIDGMSKDKHVNDAFDLYSEMVAKRISPDVVTYSALIRGFFIVGKLKDAIDLFN 267

Query: 224 EALEKSMTGNNWSTLDVLIILY---GYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFG 280
           + + +++  + + T ++L+  +   G L K K++  +       PNV   ++   ++ F 
Sbjct: 268 KMILENIKPDVY-TFNILVDGFCKEGRLKKAKNVLDMMMIQDIKPNVS--TFNTLVDGFC 324

Query: 281 RIAQVSRAEELWLEM--QSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPN 338
           +  ++   + ++  M  Q +K    T  Y S++  YC    ++KA  +   MS  G   N
Sbjct: 325 KDRKMKEGKTVFAMMMKQGIKPNVVT--YCSLMDGYCLVKQVNKAKKIFNTMSQRGVTAN 382

Query: 339 AITYRHLALGCFKSNLVEEGF---KALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKG 395
             +Y          N++  GF   K ++  MKL      +   P + T  S+I+   + G
Sbjct: 383 VHSY----------NIMINGFCKIKKVDKAMKLFIEMHHKHIIPDVVTYNSLIDGLCKSG 432

Query: 396 DVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKINDPNLLRRMILGGARPDAETYSLL 455
            +  A  L  E+           YN+++ A          LL ++   G +P+  T ++L
Sbjct: 433 KISYAFQLVNEMHDRGQPPNIITYNSILNA----------LLTKLKDQGIQPNMHTDTIL 482



 Score = 47.4 bits (111), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 73/350 (20%), Positives = 134/350 (38%), Gaps = 53/350 (15%)

Query: 148 TIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVS----- 202
           T+ ++ +QM+ + + P+  TF+IL+        I     V + + +   EP+ ++     
Sbjct: 86  TVLSLSQQMEFEGINPNFVTFNILINCFCQLGLIPFAFSVLAKILKMGYEPDIITLNTFI 145

Query: 203 --YCILATAHAVARLYT--VA----------ETYVEALEKSMTGNNWSTLDVL------- 241
             +C+    H     +   VA           T +  L K   G   + L +L       
Sbjct: 146 KGFCLKGQIHQALNFHDKLVALGFHLDQVSYGTLINGLCK--VGETRAALQLLRRVDGKL 203

Query: 242 ----IILYGY----LAKGKDLERIWATVQEL------PNVRSKSYVLAIEAFGRIAQVSR 287
                ++Y      ++K K +   +    E+      P+V   +Y   I  F  + ++  
Sbjct: 204 VQLNAVMYNTVIDGMSKDKHVNDAFDLYSEMVAKRISPDVV--TYSALIRGFFIVGKLKD 261

Query: 288 AEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLAL 347
           A +L+ +M           +N ++  +CK G + KA  +L  M +   KPN  T+  L  
Sbjct: 262 AIDLFNKMILENIKPDVYTFNILVDGFCKEGRLKKAKNVLDMMMIQDIKPNVSTFNTLVD 321

Query: 348 GCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEEL 407
           G  K   ++EG     + MK       +   P + T  S+++ +     V  A+ +F  +
Sbjct: 322 GFCKDRKMKEGKTVFAMMMK-------QGIKPNVVTYCSLMDGYCLVKQVNKAKKIFNTM 374

Query: 408 KKANYTKYTFVYNTLIKAYVKAKINDP--NLLRRMILGGARPDAETYSLL 455
            +   T     YN +I  + K K  D    L   M      PD  TY+ L
Sbjct: 375 SQRGVTANVHSYNIMINGFCKIKKVDKAMKLFIEMHHKHIIPDVVTYNSL 424


>gi|144923530|gb|ABE80159.2| Tetratricopeptide-like helical [Medicago truncatula]
          Length = 695

 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 92/395 (23%), Positives = 162/395 (41%), Gaps = 44/395 (11%)

Query: 94  NELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNIL 153
           N ++Y+ L+      G +  +L    ++   G  +  + +N LI    S GR + +  +L
Sbjct: 194 NLVMYSALIDGLCKDGFVSDALGLCSQIGERGILLDAVTYNSLIDGCCSVGRWQEVTQLL 253

Query: 154 RQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVA 213
            +M  + V P   TF+IL+     +  I     V + M +   +P+ V+Y      +A+ 
Sbjct: 254 TKMVRENVDPDDYTFNILIDALCKEGRILEAQGVLAMMSKRGEKPDIVTY------NALM 307

Query: 214 RLYTVAETYVEALE--KSMT--GNNWSTLDVLIILYGYLAKGKDLERIWATVQELPN--- 266
             Y   E   EA E    M   G     L+  +++ GY  K K ++      +EL N   
Sbjct: 308 EGYCSRENVHEARELFNRMVKRGLEPDVLNYNVLIDGY-CKTKMVDEAMVLFKELCNKNL 366

Query: 267 -VRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASG 325
                SY   I+      ++S  ++L  EM    Q      YN +I   CK G I +A G
Sbjct: 367 VPTIASYNSLIDGLCNSGRISHVKKLLDEMHGSAQPPDVVTYNILIDALCKEGRILEALG 426

Query: 326 LLKEMSMNGCKPNAITYRHLALG-CFKSN----------LVEEGFKA------------- 361
           +L  M   G KPN +TY  +  G C ++N          +V+ G +              
Sbjct: 427 VLVMMMKKGVKPNIVTYNAMMDGYCLRNNVNVAKDIFNRMVKSGLEPDILNYNVLINGYC 486

Query: 362 ----LELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTF 417
               ++  + L    + ++  P + +  S+I+     G + + + L +E+  +  +    
Sbjct: 487 KTEMVDEAIVLFKEMRHKNLIPDIASYNSLIDGLCNLGRIPHVQELLDEMCDSGQSPDVI 546

Query: 418 VYNTLIKAYVKAKINDPNL-LRRMILGGARPDAET 451
            YN L+ A+ K +  D  + L R I+ G  PD  T
Sbjct: 547 TYNILLDAFCKTQPFDKAISLFRQIVEGIWPDFYT 581



 Score = 65.9 bits (159), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 67/327 (20%), Positives = 131/327 (40%), Gaps = 45/327 (13%)

Query: 132 VFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDM 191
           VF++L+      G   T  ++  Q+++  ++P ++TF IL+    +  +      + + +
Sbjct: 57  VFDKLLGAIVRMGHYPTAISLFTQLQSKGISPSIATFTILINCYFHQSHTAFAFSLLATI 116

Query: 192 KRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKG 251
            +S  +PN V++  +     +  +   A  + + L                     LA+G
Sbjct: 117 LKSGYQPNLVTFNTIINGFCINGMIFKALDFCQNL---------------------LAQG 155

Query: 252 KDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVI 311
              ++              +Y   I    +  Q+  A  L  EM+          Y+++I
Sbjct: 156 YLFDQF-------------TYGTLINGLSKNGQIKAALHLLQEMEKSSVQPNLVMYSALI 202

Query: 312 SVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITT 371
              CK+GF+  A GL  ++   G   +A+TY  L  GC      +E  + L        T
Sbjct: 203 DGLCKDGFVSDALGLCSQIGERGILLDAVTYNSLIDGCCSVGRWQEVTQLL--------T 254

Query: 372 KKVRSSTPWLETTLSI-IEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYV-KA 429
           K VR +    + T +I I+   ++G +  A+ +   + K         YN L++ Y  + 
Sbjct: 255 KMVRENVDPDDYTFNILIDALCKEGRILEAQGVLAMMSKRGEKPDIVTYNALMEGYCSRE 314

Query: 430 KINDP-NLLRRMILGGARPDAETYSLL 455
            +++   L  RM+  G  PD   Y++L
Sbjct: 315 NVHEARELFNRMVKRGLEPDVLNYNVL 341



 Score = 61.6 bits (148), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 75/372 (20%), Positives = 156/372 (41%), Gaps = 19/372 (5%)

Query: 92  YQNELLYNNLVIA--CLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTI 149
           YQ  L+  N +I   C++ G+I  +L++ + +   G+      +  LI   S  G+ K  
Sbjct: 121 YQPNLVTFNTIINGFCIN-GMIFKALDFCQNLLAQGYLFDQFTYGTLINGLSKNGQIKAA 179

Query: 150 PNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSY-CILAT 208
            ++L++M+   V P++  +  L+     D  +   + + S +    +  + V+Y  ++  
Sbjct: 180 LHLLQEMEKSSVQPNLVMYSALIDGLCKDGFVSDALGLCSQIGERGILLDAVTYNSLIDG 239

Query: 209 AHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILY---GYLAKGKDLERIWATVQELP 265
             +V R   V +   + + +++  +++ T ++LI      G + + + +  + +   E P
Sbjct: 240 CCSVGRWQEVTQLLTKMVRENVDPDDY-TFNILIDALCKEGRILEAQGVLAMMSKRGEKP 298

Query: 266 NVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASG 325
           ++   +Y   +E +     V  A EL+  M           YN +I  YCK   +D+A  
Sbjct: 299 DI--VTYNALMEGYCSRENVHEARELFNRMVKRGLEPDVLNYNVLIDGYCKTKMVDEAMV 356

Query: 326 LLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTL 385
           L KE+      P   +Y  L  G   S  +           KL+      +  P + T  
Sbjct: 357 LFKELCNKNLVPTIASYNSLIDGLCNSGRISHV-------KKLLDEMHGSAQPPDVVTYN 409

Query: 386 SIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAY-VKAKIN-DPNLLRRMILG 443
            +I+   ++G +  A  +   + K         YN ++  Y ++  +N   ++  RM+  
Sbjct: 410 ILIDALCKEGRILEALGVLVMMMKKGVKPNIVTYNAMMDGYCLRNNVNVAKDIFNRMVKS 469

Query: 444 GARPDAETYSLL 455
           G  PD   Y++L
Sbjct: 470 GLEPDILNYNVL 481



 Score = 55.8 bits (133), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 70/315 (22%), Positives = 121/315 (38%), Gaps = 52/315 (16%)

Query: 133 FNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMK 192
           +N LI    + GR   +  +L +M      P V T++IL+     +  I   + V   M 
Sbjct: 373 YNSLIDGLCNSGRISHVKKLLDEMHGSAQPPDVVTYNILIDALCKEGRILEALGVLVMMM 432

Query: 193 RSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGK 252
           +  V+PN V+Y  +   + +     VA+     + KS  G     L+  +++ GY  K +
Sbjct: 433 KKGVKPNIVTYNAMMDGYCLRNNVNVAKDIFNRMVKS--GLEPDILNYNVLINGY-CKTE 489

Query: 253 DLERIWATVQEL------PNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQ 306
            ++      +E+      P++   SY   I+    + ++   +EL  EM    Q      
Sbjct: 490 MVDEAIVLFKEMRHKNLIPDI--ASYNSLIDGLCNLGRIPHVQELLDEMCDSGQSPDVIT 547

Query: 307 YNSVISVYCKNGFIDKASGL----------------------------------LKEMSM 332
           YN ++  +CK    DKA  L                                  LK + M
Sbjct: 548 YNILLDAFCKTQPFDKAISLFRQIVEGIWPDFYTNHAIVDNLCKGEKLKMAEDALKHLLM 607

Query: 333 NGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFA 392
           +GC PN  TY  L      + L ++G  +    M L++  +     P   T   II +  
Sbjct: 608 HGCSPNVQTYTILI-----NALCKDG--SFGEAMLLLSKMEDNDRPPDAITFEIIIGVLL 660

Query: 393 EKGDVGNAENLFEEL 407
           ++ +   AE L EE+
Sbjct: 661 QRNETDKAEKLREEM 675


>gi|449525162|ref|XP_004169587.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At1g73710-like [Cucumis sativus]
          Length = 1026

 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 78/336 (23%), Positives = 144/336 (42%), Gaps = 16/336 (4%)

Query: 98  YNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMK 157
           YN L+      G +K +     +M   G S+  + FN +I    S G       +L +M+
Sbjct: 324 YNTLIDLYGKAGRLKDAANVFGEMLTTGISMDTITFNTMIYTCGSHGHLAEAETLLLKME 383

Query: 158 ADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYT 217
              ++P   T++I + + AND NI+G +K Y  ++   + P+ V++  L    +   +  
Sbjct: 384 ERGLSPDTKTYNIFLSLYANDGNIDGALKCYRRIREVGLFPDVVTHRALLHVLSERNMVE 443

Query: 218 VAETYVEALEKSMTGNNWSTLDVLIILY---GYLAKGKDLERIWATVQEL-PNVRSKSYV 273
             E  +  +EKS    +  +L  +I +Y   G L + K L   +    EL P + +    
Sbjct: 444 DVENVIAEMEKSHILLDEHSLPRVIKMYINEGLLDRAKILLEKYRLDTELSPRISAA--- 500

Query: 274 LAIEAFGRIAQVSRAEELWLEMQSVKQLKA-TEQYNSVISVYCKNGFIDKASGLLKEMSM 332
             I+A+        AE ++L  + +   K    +YN +I  Y K    +KA  L K M  
Sbjct: 501 -IIDAYAEKGLWFEAESIFLWKRDLAGKKXDVMEYNVMIKAYGKAELYEKAFLLFKSMKN 559

Query: 333 NGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFA 392
            G  P+  TY  L       +LV+E         +L+T  +     P  +T  ++I  +A
Sbjct: 560 RGTWPDECTYNSLIQMFSGGDLVDE-------ARRLLTEMQRMGFKPTCQTFSAVIASYA 612

Query: 393 EKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVK 428
             G + +A  +++ +  A+      +Y  L+  + +
Sbjct: 613 RLGLMSDAVEVYDMMVHADVEPNEILYGVLVNGFAE 648



 Score = 55.5 bits (132), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 104/457 (22%), Positives = 188/457 (41%), Gaps = 70/457 (15%)

Query: 43  KRALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQG-EKLFCCIPKDYQNELLYNN- 100
           +R ++V +W   ++ Y P  + Y+ +L    +  G +Q  ++L  C  +  +N ++  N 
Sbjct: 142 ERVIQVFQWFKSQKDYVPNVIHYNIVL----RTLGQAQKWDELRLCWNEMAENGVVPTNN 197

Query: 101 ---LVIACLDK-GVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQM 156
              ++I    K G++K +L ++K M V G      +F   + +N       T+  +L+  
Sbjct: 198 TYGMLIDVYGKVGLVKEALLWIKHMTVRG------IFPDEVTMN-------TVVRVLKDA 244

Query: 157 KADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLY 216
                A           +E ND ++   ++ +     S VEP      I         L+
Sbjct: 245 GEFDSADKFYKDWCRGLVELNDFDLNSRVEDFG--VNSAVEP------ITPKHFCXTELF 296

Query: 217 TVAETYVEALEKSMTGNNW-------STLDVLIILYGYLAKGKDLERIWATVQELP-NVR 268
            +  T +   + S   +N        ST + LI LYG   + KD   ++  +     ++ 
Sbjct: 297 RIG-TRIPNRKVSPEVDNCVRKPRLTSTYNTLIDLYGKAGRLKDAANVFGEMLTTGISMD 355

Query: 269 SKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLK 328
           + ++   I   G    ++ AE L L+M+       T+ YN  +S+Y  +G ID A    +
Sbjct: 356 TITFNTMIYTCGSHGHLAEAETLLLKMEERGLSPDTKTYNIFLSLYANDGNIDGALKCYR 415

Query: 329 EMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALE---------------------LGMK 367
            +   G  P+ +T+R L     + N+VE+    +                      +   
Sbjct: 416 RIREVGLFPDVVTHRALLHVLSERNMVEDVENVIAEMEKSHILLDEHSLPRVIKMYINEG 475

Query: 368 LITTKKVRSSTPWLETTLS------IIEIFAEKGDVGNAENLFEELKKANYTKYTFV-YN 420
           L+   K+      L+T LS      II+ +AEKG    AE++F   +     K   + YN
Sbjct: 476 LLDRAKILLEKYRLDTELSPRISAAIIDAYAEKGLWFEAESIFLWKRDLAGKKXDVMEYN 535

Query: 421 TLIKAYVKAKINDPN--LLRRMILGGARPDAETYSLL 455
            +IKAY KA++ +    L + M   G  PD  TY+ L
Sbjct: 536 VMIKAYGKAELYEKAFLLFKSMKNRGTWPDECTYNSL 572



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 54/240 (22%), Positives = 102/240 (42%), Gaps = 9/240 (3%)

Query: 118 MKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEAN 177
            K M+  G       +N LI + S          +L +M+     P   TF  ++   A 
Sbjct: 554 FKSMKNRGTWPDECTYNSLIQMFSGGDLVDEARRLLTEMQRMGFKPTCQTFSAVIASYAR 613

Query: 178 DHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWST 237
              +   ++VY  M  ++VEPNE+ Y +L    A       A  Y   +EKS    N   
Sbjct: 614 LGLMSDAVEVYDMMVHADVEPNEILYGVLVNGFAEIGQAEEALKYFRLMEKSGIAENQIV 673

Query: 238 LDVLIILYGYLAKGKDLERIWATVQELPNVRSKSYVLA----IEAFGRIAQVSRAEELWL 293
           L  LI  +  +   +D  RI+     + N+   +  +A    I  +  +  VS A++++ 
Sbjct: 674 LTSLIKAFSKVGSLEDARRIY---NRMKNMEDGADTIASNSMINLYADLGMVSEAKQVFE 730

Query: 294 EMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSN 353
           +++          + ++I +Y   G +D+A  + +EM  +G   +A ++R + + C+  N
Sbjct: 731 DLRERGYADGV-SFATMIYLYKNIGMLDEAIEVAEEMKESGLLRDATSFRKV-IECYAIN 788


>gi|224092336|ref|XP_002309564.1| predicted protein [Populus trichocarpa]
 gi|222855540|gb|EEE93087.1| predicted protein [Populus trichocarpa]
          Length = 593

 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 98/438 (22%), Positives = 179/438 (40%), Gaps = 33/438 (7%)

Query: 33  INRLRKLQLNKRALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQGEKLF------C 86
           IN    LQ    A  V+  +I+    +P  + ++ L+ +  K    +Q  +LF       
Sbjct: 140 INCFSHLQRVDLAFSVLAKIIK-LGLQPTIVTFTTLINWLCKVGKFAQAMELFDDMVARG 198

Query: 87  CIPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRR 146
           C P  Y    + N L       G    +   +KKM   G   + + ++ +I  +    R 
Sbjct: 199 CRPDVYTYTTIINGLC----KIGETAAAAGLLKKMEEAGCQPNVVTYSTIIDSHRKDRRV 254

Query: 147 KTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCIL 206
               +I   MK   ++P + T++ L++   N    +    + ++M+   + P+ V++ +L
Sbjct: 255 NEALDIFSYMKVKGISPDIFTYNSLIQGLCNFSQWKEASALLNEMRSLNIMPDIVTFNVL 314

Query: 207 ATAHAVARLYTVAETYVEALEKSMT--GNNWSTLDVLIILYGY-----LAKGKDLERIWA 259
                + +   V+E   + + K+MT  G     +    ++YGY     + + + L     
Sbjct: 315 V--DTICKEGKVSEA--QGVLKTMTEMGVEPDVVTYSSLMYGYSLRSEVVEARKLFDAMI 370

Query: 260 TVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGF 319
           T    P+V S  Y + I  + ++ ++  A++L+ EM           YN++I   C+ G 
Sbjct: 371 TKGCKPDVFS--YNILINGYCKVKRIDEAKQLFNEMIHQGLTPNNVSYNTLIHGLCQLGS 428

Query: 320 IDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTP 379
           + +A  L K M  NG  PN  TY  L  G  K     + F+       L    +   S P
Sbjct: 429 LREARNLFKNMHTNGNLPNLFTYSILLDGFCKQGYFGKAFR-------LFRAMQSTYSKP 481

Query: 380 WLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKINDPNL--L 437
            L     +I+   + G++ +A  LF EL          +Y T+I    K  + D  L   
Sbjct: 482 NLVMYNILIDAMCKSGNLRDARKLFSELFVKGLQPNAQIYTTIINGLCKEGLLDEALEAF 541

Query: 438 RRMILGGARPDAETYSLL 455
           R M   G  PD  +Y+++
Sbjct: 542 RNMEEDGCPPDEISYNVI 559



 Score = 42.0 bits (97), Expect = 0.65,   Method: Compositional matrix adjust.
 Identities = 41/161 (25%), Positives = 64/161 (39%), Gaps = 12/161 (7%)

Query: 299 KQLKATEQYNSVISVYCKNG-FIDKASGLLKEMSMNGCKPNAITYRHLALGCFKS-NLVE 356
           K L    Q+  ++S   K G + D    L K+M + G  PN  T   L + CF     V+
Sbjct: 92  KPLPCIIQFTKLLSAIVKMGQYYDTVISLTKQMELAGLSPNIYTLSIL-INCFSHLQRVD 150

Query: 357 EGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYT 416
             F  L   +KL          P + T  ++I    + G    A  LF+++         
Sbjct: 151 LAFSVLAKIIKL-------GLQPTIVTFTTLINWLCKVGKFAQAMELFDDMVARGCRPDV 203

Query: 417 FVYNTLIKAYVK--AKINDPNLLRRMILGGARPDAETYSLL 455
           + Y T+I    K         LL++M   G +P+  TYS +
Sbjct: 204 YTYTTIINGLCKIGETAAAAGLLKKMEEAGCQPNVVTYSTI 244


>gi|242060656|ref|XP_002451617.1| hypothetical protein SORBIDRAFT_04g004710 [Sorghum bicolor]
 gi|241931448|gb|EES04593.1| hypothetical protein SORBIDRAFT_04g004710 [Sorghum bicolor]
          Length = 593

 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 67/308 (21%), Positives = 131/308 (42%), Gaps = 27/308 (8%)

Query: 163 PHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETY 222
           P   T+ +L++   N   +     V S+M+++ + P    Y         AR    A   
Sbjct: 198 PTEDTYALLLRAYCNSGQLHRAEGVISEMQKNGLPPTATVYNAYLDGLLKARCSEKAVEV 257

Query: 223 VEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQEL---PNVRSKSYVLAIEAF 279
            + ++K     N  T  ++I +YG   +     +++  ++ +   PN+   +Y   + AF
Sbjct: 258 YQRMKKERCRTNTETYTLMINVYGKAKQPMSSLKVFNEMKTIGCKPNI--CTYTALVNAF 315

Query: 280 GRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNA 339
            R     +AEE++ EMQ          YN+++  Y + G    AS +   M   GC+P+ 
Sbjct: 316 AREGLCEKAEEVFEEMQQAGHEPDVYAYNALMEAYSRAGLPQGASEIFSLMEHMGCEPDR 375

Query: 340 ITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGN 399
            +Y  L     ++ L +E   A +         K +   P +++ + ++   A+ G+V  
Sbjct: 376 ASYNILVDAYGRAGLHQEAEAAFQ-------ELKQQGMRPTMKSHMLLLSAHAKSGNVAR 428

Query: 400 AENLFEELKKANYTKYTFVYNTLIKAYVKA-KINDPNLLRRMILGGAR-----------P 447
            E +  +L K+     TF  N ++ AY +A +++D   + R++    R           P
Sbjct: 429 CEEVMAQLHKSGLRPDTFALNAMLNAYGRAGRLDD---MERLLGAMERGGDDDAGGGAAP 485

Query: 448 DAETYSLL 455
           D  TY++L
Sbjct: 486 DTSTYNVL 493



 Score = 75.9 bits (185), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 52/217 (23%), Positives = 95/217 (43%), Gaps = 36/217 (16%)

Query: 272 YVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMS 331
           Y L I+A+G+  Q+++AE +++ +     +   + Y  ++  YC +G + +A G++ EM 
Sbjct: 168 YNLLIDAYGQKRQLNKAESIYMALLEAHCVPTEDTYALLLRAYCNSGQLHRAEGVISEMQ 227

Query: 332 MNGCKPNAITYRHLALGCFKSNLVEEGFKALEL--------------------------- 364
            NG  P A  Y     G  K+   E   KA+E+                           
Sbjct: 228 KNGLPPTATVYNAYLDGLLKARCSE---KAVEVYQRMKKERCRTNTETYTLMINVYGKAK 284

Query: 365 ----GMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYN 420
                +K+    K     P + T  +++  FA +G    AE +FEE+++A +    + YN
Sbjct: 285 QPMSSLKVFNEMKTIGCKPNICTYTALVNAFAREGLCEKAEEVFEEMQQAGHEPDVYAYN 344

Query: 421 TLIKAYVKAKI--NDPNLLRRMILGGARPDAETYSLL 455
            L++AY +A +      +   M   G  PD  +Y++L
Sbjct: 345 ALMEAYSRAGLPQGASEIFSLMEHMGCEPDRASYNIL 381



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 76/437 (17%), Positives = 181/437 (41%), Gaps = 20/437 (4%)

Query: 33  INRLRKLQLNKR---ALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQGEKLFC--- 86
           +N   +L+LN++    + V EW++    +RP  + Y+ L++   +   +++ E ++    
Sbjct: 133 VNVAVQLRLNRQWEPIITVCEWILYRSSFRPDIICYNLLIDAYGQKRQLNKAESIYMALL 192

Query: 87  ---CIPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLI--ILNS 141
              C+P     E  Y  L+ A  + G +  +   + +M+  G   +  V+N  +  +L +
Sbjct: 193 EAHCVP----TEDTYALLLRAYCNSGQLHRAEGVISEMQKNGLPPTATVYNAYLDGLLKA 248

Query: 142 SPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEV 201
               +     + ++MK ++   +  T+ +++ +          +KV+++MK    +PN  
Sbjct: 249 RCSEKAV--EVYQRMKKERCRTNTETYTLMINVYGKAKQPMSSLKVFNEMKTIGCKPNIC 306

Query: 202 SYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATV 261
           +Y  L  A A   L   AE   E ++++    +    + L+  Y      +    I++ +
Sbjct: 307 TYTALVNAFAREGLCEKAEEVFEEMQQAGHEPDVYAYNALMEAYSRAGLPQGASEIFSLM 366

Query: 262 QELPNVRSK-SYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFI 320
           + +     + SY + ++A+GR      AE  + E++        + +  ++S + K+G +
Sbjct: 367 EHMGCEPDRASYNILVDAYGRAGLHQEAEAAFQELKQQGMRPTMKSHMLLLSAHAKSGNV 426

Query: 321 DKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPW 380
            +   ++ ++  +G +P+      +     ++  +++  + L    +         + P 
Sbjct: 427 ARCEEVMAQLHKSGLRPDTFALNAMLNAYGRAGRLDDMERLLGAMERGGDDDAGGGAAPD 486

Query: 381 LETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKINDPNL--LR 438
             T   ++ ++   G +   E  F  L           + + I AY + K     L    
Sbjct: 487 TSTYNVLVNVYGRAGYLDRMEAAFRALAARGLAADVVTWTSRIGAYARKKEYGRCLEIFE 546

Query: 439 RMILGGARPDAETYSLL 455
            M+  G  PDA T  +L
Sbjct: 547 EMVDAGCYPDAGTAKVL 563



 Score = 65.1 bits (157), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 77/369 (20%), Positives = 147/369 (39%), Gaps = 22/369 (5%)

Query: 3   RLPRGEPVGSAFQSWMREGFPVHRGEIFHSINRLRKLQLNKRALEVMEWVIRERPYRPKE 62
           +L R E V S  Q   + G P         ++ L K + +++A+EV + + +ER  R   
Sbjct: 215 QLHRAEGVISEMQ---KNGLPPTATVYNAYLDGLLKARCSEKAVEVYQRMKKER-CRTNT 270

Query: 63  LDYSYLLEFTIKNHGISQGEKLF------CCIPKDYQNELLYNNLVIACLDKGVIKLSLE 116
             Y+ ++    K        K+F       C P    N   Y  LV A   +G+ + + E
Sbjct: 271 ETYTLMINVYGKAKQPMSSLKVFNEMKTIGCKP----NICTYTALVNAFAREGLCEKAEE 326

Query: 117 YMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEA 176
             ++M+  GH      +N L+   S  G  +    I   M+     P  ++++IL+    
Sbjct: 327 VFEEMQQAGHEPDVYAYNALMEAYSRAGLPQGASEIFSLMEHMGCEPDRASYNILVDAYG 386

Query: 177 NDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWS 236
                +     + ++K+  + P   S+ +L +AHA +      E  +  L KS    +  
Sbjct: 387 RAGLHQEAEAAFQELKQQGMRPTMKSHMLLLSAHAKSGNVARCEEVMAQLHKSGLRPDTF 446

Query: 237 TLDVLIILYGYLAKGKDLERIWATVQELPNVR--------SKSYVLAIEAFGRIAQVSRA 288
            L+ ++  YG   +  D+ER+   ++   +          + +Y + +  +GR   + R 
Sbjct: 447 ALNAMLNAYGRAGRLDDMERLLGAMERGGDDDAGGGAAPDTSTYNVLVNVYGRAGYLDRM 506

Query: 289 EELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALG 348
           E  +  + +         + S I  Y +     +   + +EM   GC P+A T + L   
Sbjct: 507 EAAFRALAARGLAADVVTWTSRIGAYARKKEYGRCLEIFEEMVDAGCYPDAGTAKVLLAA 566

Query: 349 CFKSNLVEE 357
           C     VE+
Sbjct: 567 CSDERQVEQ 575


>gi|38605763|emb|CAE05864.3| OSJNBa0044K18.6 [Oryza sativa Japonica Group]
          Length = 902

 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 76/362 (20%), Positives = 141/362 (38%), Gaps = 84/362 (23%)

Query: 96  LLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQ 155
           ++YN L+    D+G +  +L Y  +M   G +++   +N L+      GR      ++ +
Sbjct: 592 VMYNALIGGYCDQGKLDTALLYRDRMVERGVAMTVATYNLLVHALFMDGRGTEAYELVEE 651

Query: 156 MKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARL 215
           M    +AP V T++IL+     + N++  ++++ +M R  V    V+Y  L   +A+++ 
Sbjct: 652 MGGKGLAPDVFTYNILINGHCKEGNVKKALEIFENMSRRGVRATVVTYTAL--IYALSKK 709

Query: 216 YTVAET---YVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSKSY 272
             V ET   + EA+ + +  +        ++LY  L                        
Sbjct: 710 GQVQETDKLFDEAVRRGIRPD--------LVLYNAL------------------------ 737

Query: 273 VLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSM 332
              I +      + RA E+  EM+  +       YN+++   C  G +D+A  L+ EM+ 
Sbjct: 738 ---INSHSTSGNIDRAFEIMGEMEKKRIAPDDVTYNTLMRGLCLLGRVDEARKLIDEMTE 794

Query: 333 NGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFA 392
            G +P+ +TY  L  G                                          ++
Sbjct: 795 RGIQPDLVTYNTLISG------------------------------------------YS 812

Query: 393 EKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKINDP--NLLRRMILGGARPDAE 450
            KGDV +A  +  E+    +      YN LI+   K    D   N+++ M+  G  PD  
Sbjct: 813 MKGDVKDALRIRNEMMNKGFNPTLLTYNALIQGLCKNGQGDDAENMVKEMVENGITPDDS 872

Query: 451 TY 452
           TY
Sbjct: 873 TY 874


>gi|449447783|ref|XP_004141647.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g73710-like [Cucumis sativus]
          Length = 1020

 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 80/337 (23%), Positives = 144/337 (42%), Gaps = 18/337 (5%)

Query: 98  YNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMK 157
           YN L+      G +K +     +M   G S+  + FN +I    S G       +L +M+
Sbjct: 324 YNTLIDLYGKAGRLKDAANVFGEMLTTGISMDTITFNTMIYTCGSHGHLAEAETLLLKME 383

Query: 158 ADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYT 217
              ++P   T++I + + AN+ NI+G +K Y  ++   + P+ V++  L    +   +  
Sbjct: 384 ERGLSPDTKTYNIFLSLYANNGNIDGALKCYRRIREVGLFPDVVTHRALLHVLSERNMVE 443

Query: 218 VAETYVEALEKSMTGNNWSTLDVLIILY---GYLAKGKDLERIWATVQEL-PNVRSKSYV 273
             E  +  +EKS    +  +L  +I +Y   G L + K L   +    EL P + +    
Sbjct: 444 DVENVIAEMEKSHILLDEHSLPRVIKMYINEGLLDRAKILLEKYRLDTELSPRISAA--- 500

Query: 274 LAIEAFGRIAQVSRAEE--LWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMS 331
             I+A+        AE   LW    S K++   E YN +I  Y K    +KA  L K M 
Sbjct: 501 -IIDAYAEKGLWFEAESIFLWKRDLSGKKMDVME-YNVMIKAYGKAELYEKAFLLFKSMK 558

Query: 332 MNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIF 391
             G  P+  TY  L       +LV+E         +L+T  +     P  +T  ++I  +
Sbjct: 559 NRGTWPDECTYNSLIQMFSGGDLVDE-------ARRLLTEMQRMGFKPTCQTFSAVIASY 611

Query: 392 AEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVK 428
           A  G + +A  +++ +  A+      +Y  L+  + +
Sbjct: 612 ARLGLMSDAVEVYDMMVHADVEPNEILYGVLVNGFAE 648



 Score = 59.7 bits (143), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 102/450 (22%), Positives = 185/450 (41%), Gaps = 56/450 (12%)

Query: 43  KRALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQG-EKLFCCIPKDYQNELLYNN- 100
           +R ++V +W   ++ Y P  + Y+ +L    +  G +Q  ++L  C  +  +N ++  N 
Sbjct: 142 ERVIQVFQWFKSQKDYVPNVIHYNIVL----RTLGQAQKWDELRLCWNEMAENGVVPTNN 197

Query: 101 ---LVIACLDK-GVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQM 156
              ++I    K G++K +L ++K M V G      +F   + +N       T+  +L+  
Sbjct: 198 TYGMLIDVYGKVGLVKEALLWIKHMTVRG------IFPDEVTMN-------TVVRVLKDA 244

Query: 157 KADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLY 216
                A           +E ND ++   ++ +     S VEP    + +L     +    
Sbjct: 245 GEFDSADKFYKDWCRGLVELNDFDLNSRVEDFG--VNSAVEPITPKHFLLTELFRIGTRI 302

Query: 217 TVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELP-NVRSKSYVLA 275
              +   E           ST + LI LYG   + KD   ++  +     ++ + ++   
Sbjct: 303 PNRKVSPEVDNCVRKPRLTSTYNTLIDLYGKAGRLKDAANVFGEMLTTGISMDTITFNTM 362

Query: 276 IEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGC 335
           I   G    ++ AE L L+M+       T+ YN  +S+Y  NG ID A    + +   G 
Sbjct: 363 IYTCGSHGHLAEAETLLLKMEERGLSPDTKTYNIFLSLYANNGNIDGALKCYRRIREVGL 422

Query: 336 KPNAITYRHLALGCFKSNLVEEGFKALE---------------------LGMKLITTKKV 374
            P+ +T+R L     + N+VE+    +                      +   L+   K+
Sbjct: 423 FPDVVTHRALLHVLSERNMVEDVENVIAEMEKSHILLDEHSLPRVIKMYINEGLLDRAKI 482

Query: 375 RSSTPWLETTLS------IIEIFAEKGDVGNAENLFEELKKANYTKYTFV-YNTLIKAYV 427
                 L+T LS      II+ +AEKG    AE++F   +  +  K   + YN +IKAY 
Sbjct: 483 LLEKYRLDTELSPRISAAIIDAYAEKGLWFEAESIFLWKRDLSGKKMDVMEYNVMIKAYG 542

Query: 428 KAKINDPN--LLRRMILGGARPDAETYSLL 455
           KA++ +    L + M   G  PD  TY+ L
Sbjct: 543 KAELYEKAFLLFKSMKNRGTWPDECTYNSL 572



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 54/240 (22%), Positives = 102/240 (42%), Gaps = 9/240 (3%)

Query: 118 MKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEAN 177
            K M+  G       +N LI + S          +L +M+     P   TF  ++   A 
Sbjct: 554 FKSMKNRGTWPDECTYNSLIQMFSGGDLVDEARRLLTEMQRMGFKPTCQTFSAVIASYAR 613

Query: 178 DHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWST 237
              +   ++VY  M  ++VEPNE+ Y +L    A       A  Y   +EKS    N   
Sbjct: 614 LGLMSDAVEVYDMMVHADVEPNEILYGVLVNGFAEIGQAEEALKYFRLMEKSGIAENQIV 673

Query: 238 LDVLIILYGYLAKGKDLERIWATVQELPNVRSKSYVLA----IEAFGRIAQVSRAEELWL 293
           L  LI  +  +   +D  RI+     + N+   +  +A    I  +  +  VS A++++ 
Sbjct: 674 LTSLIKAFSKVGSLEDARRIY---NRMKNMEDGADTIASNSMINLYADLGMVSEAKQVFE 730

Query: 294 EMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSN 353
           +++          + ++I +Y   G +D+A  + +EM  +G   +A ++R + + C+  N
Sbjct: 731 DLRERGYADGV-SFATMIYLYKNIGMLDEAIEVAEEMKESGLLRDATSFRKV-IECYAIN 788


>gi|225429339|ref|XP_002269471.1| PREDICTED: pentatricopeptide repeat-containing protein At5g02860
           [Vitis vinifera]
          Length = 811

 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 57/268 (21%), Positives = 122/268 (45%), Gaps = 5/268 (1%)

Query: 98  YNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMK 157
           YN L+  C    + + +   +K+M++ G S   + +N L+ +     R K    +L++M+
Sbjct: 274 YNTLISCCRRGNLYEEAAGVLKEMKLAGFSPDKVTYNALLDVYGKSRRSKEAMEVLQEME 333

Query: 158 ADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYT 217
            +   P + T++ L+   A D  +E  +++ + M    ++P+  +Y  L +    A    
Sbjct: 334 GNGCPPSIVTYNSLISAYARDGLLEDALELKNQMVEKGIKPDVFTYTTLLSGFEKAGKDK 393

Query: 218 VAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIW---ATVQELPNVRSKSYVL 274
            A    E +       N  T + LI ++G   K  ++ +++    T Q  P++ + + +L
Sbjct: 394 AAVQIFEEMRNEGCKPNICTFNALIKMHGNRGKFTEMMKVFEDIKTFQCSPDIVTWNTLL 453

Query: 275 AIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNG 334
           ++  FG+    S    ++ EM+    +   + +N++IS Y + G  D+A  + K M   G
Sbjct: 454 SV--FGQNGMDSEVSGVFKEMKRAGFVPERDTFNTLISSYSRCGSFDQAMAVYKRMLEAG 511

Query: 335 CKPNAITYRHLALGCFKSNLVEEGFKAL 362
             P+  +Y  +     +  L ++  K L
Sbjct: 512 VNPDLSSYNAVLAALARGGLWKQSEKVL 539



 Score = 76.6 bits (187), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 78/375 (20%), Positives = 160/375 (42%), Gaps = 26/375 (6%)

Query: 93  QNELLYNNLVIACL-----DKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRK 147
           ++ELL N  +IA +       G +  +   +  +   G  +    +  +I   +S GR +
Sbjct: 158 ESELLLNGSIIAVIISILGKGGRVSAAASLLHNLCKDGFDVDVYAYTSMITAFTSNGRYR 217

Query: 148 TIPNILRQMKADKVAPHVSTFHILMKIEAN-DHNIEGLMKVYSDMKRSEVEPNEVSYCIL 206
               + ++M+     P + T+++++ +          ++ +   MK + + P+  +Y  L
Sbjct: 218 EAVMVFKKMEEVGCKPTLITYNVILNVYGKMGMPWNKMVGLVDRMKSAGIAPDSYTYNTL 277

Query: 207 ATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQEL-- 264
            +      LY  A   ++ ++ +    +  T + L+ +YG   + K+   +   +QE+  
Sbjct: 278 ISCCRRGNLYEEAAGVLKEMKLAGFSPDKVTYNALLDVYGKSRRSKEAMEV---LQEMEG 334

Query: 265 ----PNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFI 320
               P++   +Y   I A+ R   +  A EL  +M           Y +++S + K G  
Sbjct: 335 NGCPPSI--VTYNSLISAYARDGLLEDALELKNQMVEKGIKPDVFTYTTLLSGFEKAGKD 392

Query: 321 DKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPW 380
             A  + +EM   GCKPN  T+  L     K +     F  +   MK+    K    +P 
Sbjct: 393 KAAVQIFEEMRNEGCKPNICTFNAL----IKMHGNRGKFTEM---MKVFEDIKTFQCSPD 445

Query: 381 LETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKINDPNLL--R 438
           + T  +++ +F + G       +F+E+K+A +      +NTLI +Y +    D  +   +
Sbjct: 446 IVTWNTLLSVFGQNGMDSEVSGVFKEMKRAGFVPERDTFNTLISSYSRCGSFDQAMAVYK 505

Query: 439 RMILGGARPDAETYS 453
           RM+  G  PD  +Y+
Sbjct: 506 RMLEAGVNPDLSSYN 520



 Score = 63.2 bits (152), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 57/248 (22%), Positives = 109/248 (43%), Gaps = 5/248 (2%)

Query: 98  YNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMK 157
           +N L+ +    G    ++   K+M   G +     +N ++   +  G  K    +L +MK
Sbjct: 484 FNTLISSYSRCGSFDQAMAVYKRMLEAGVNPDLSSYNAVLAALARGGLWKQSEKVLAEMK 543

Query: 158 ADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYT 217
             +  P+  T+  L+   AN   IE +  +  ++    +EP  V    L   ++   L  
Sbjct: 544 DGRCKPNELTYCSLLHAYANGKEIERMCALAEEIYSGIIEPRAVLLKTLVLVNSKCDLLM 603

Query: 218 VAETYVEALEKSMTGNNWSTLDVLIILYG---YLAKGKDLERIWATVQELPNVRSKSYVL 274
             E     L +     + +TL+ ++ +YG    +AK  ++          P++ + + ++
Sbjct: 604 ETERAFLELRQRGFSPDITTLNAMVSIYGRRQMVAKANEILDCMKRGGFTPSLTTYNSLM 663

Query: 275 AIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNG 334
            +  + R A   R+EE+  E+ +         YN+VI  YC+NG +  AS +L EM  +G
Sbjct: 664 YM--YSRSANFERSEEILREILAKGIRPDIISYNTVIYAYCRNGRMRDASRVLSEMRESG 721

Query: 335 CKPNAITY 342
             P+ ITY
Sbjct: 722 PAPDIITY 729



 Score = 48.1 bits (113), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 40/163 (24%), Positives = 73/163 (44%), Gaps = 9/163 (5%)

Query: 295 MQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNL 354
           M+S      +  YN++IS   +    ++A+G+LKEM + G  P+ +TY  L     KS  
Sbjct: 262 MKSAGIAPDSYTYNTLISCCRRGNLYEEAAGVLKEMKLAGFSPDKVTYNALLDVYGKSRR 321

Query: 355 VEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTK 414
            +E        M+++   +     P + T  S+I  +A  G + +A  L  ++ +     
Sbjct: 322 SKE-------AMEVLQEMEGNGCPPSIVTYNSLISAYARDGLLEDALELKNQMVEKGIKP 374

Query: 415 YTFVYNTLIKAYVKAKINDP--NLLRRMILGGARPDAETYSLL 455
             F Y TL+  + KA  +     +   M   G +P+  T++ L
Sbjct: 375 DVFTYTTLLSGFEKAGKDKAAVQIFEEMRNEGCKPNICTFNAL 417


>gi|302768589|ref|XP_002967714.1| hypothetical protein SELMODRAFT_63558 [Selaginella moellendorffii]
 gi|300164452|gb|EFJ31061.1| hypothetical protein SELMODRAFT_63558 [Selaginella moellendorffii]
          Length = 384

 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 80/346 (23%), Positives = 150/346 (43%), Gaps = 12/346 (3%)

Query: 114 SLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMK 173
           +L  ++ M+  G     +++N L+    + GR +    IL  MK DKV+ ++ T+  L+K
Sbjct: 37  ALRLLEVMKESGKKPDEILYNCLVNGLVNSGRLEAAEKILDDMKRDKVSANLVTYTNLIK 96

Query: 174 IEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGN 233
             AN   ++   K++ +MK     PN  +Y  L   +    L+  A    + ++      
Sbjct: 97  EYANTGRLQDCRKLFQEMKDKGESPNSWTYNALIQGYGRKGLFKEALELYDEMDGVGCAK 156

Query: 234 NWSTLDVLIILYGYLAKGKDLERIW--ATVQELPNVRSKSYVLAIEAFGRIAQVSRAEEL 291
           +  T ++ I +YG     +D+ER+      + +P  +  +Y   ++ + + +   +A E+
Sbjct: 157 DVHTYNIAIAMYGKRGLLEDMERLLDEMDTKGVPPDQV-TYNTLLDVYAKKSYFVKAHEI 215

Query: 292 WLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFK 351
             EM           YN ++S   K   + +A+ L + +   G  PN +TY  +     +
Sbjct: 216 LREMTEAGYRPNIWTYNIMLSSARKEQSVAEATQLFENLKSKGVVPNIVTYSAMLSLYGR 275

Query: 352 SNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKAN 411
             L  E   A +L  ++I         P +     +IE +   G    A   F++++K+ 
Sbjct: 276 HGLYTE---AAKLWDEMIEA----GCIPCIIAYSGLIESYGHHGMYQEALACFQDMRKSG 328

Query: 412 YTKYTFVYNTLIKAYVKA-KINDPNLLR-RMILGGARPDAETYSLL 455
               T +Y  L+ AY KA +  +  LL   M   G  PD  TY +L
Sbjct: 329 IVPDTKIYTALMDAYGKAGRCREAELLYFEMTKEGFVPDGITYGIL 374



 Score = 60.8 bits (146), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 57/252 (22%), Positives = 105/252 (41%), Gaps = 5/252 (1%)

Query: 94  NELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNIL 153
           N   YN L+     KG+ K +LE   +M  +G +     +N  I +    G  + +  +L
Sbjct: 122 NSWTYNALIQGYGRKGLFKEALELYDEMDGVGCAKDVHTYNIAIAMYGKRGLLEDMERLL 181

Query: 154 RQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVA 213
            +M    V P   T++ L+ + A         ++  +M  +   PN  +Y I+ ++    
Sbjct: 182 DEMDTKGVPPDQVTYNTLLDVYAKKSYFVKAHEILREMTEAGYRPNIWTYNIMLSSARKE 241

Query: 214 RLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQE---LPNVRSK 270
           +    A    E L+      N  T   ++ LYG      +  ++W  + E   +P +   
Sbjct: 242 QSVAEATQLFENLKSKGVVPNIVTYSAMLSLYGRHGLYTEAAKLWDEMIEAGCIPCI--I 299

Query: 271 SYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEM 330
           +Y   IE++G       A   + +M+    +  T+ Y +++  Y K G   +A  L  EM
Sbjct: 300 AYSGLIESYGHHGMYQEALACFQDMRKSGIVPDTKIYTALMDAYGKAGRCREAELLYFEM 359

Query: 331 SMNGCKPNAITY 342
           +  G  P+ ITY
Sbjct: 360 TKEGFVPDGITY 371


>gi|302758218|ref|XP_002962532.1| hypothetical protein SELMODRAFT_404389 [Selaginella moellendorffii]
 gi|300169393|gb|EFJ35995.1| hypothetical protein SELMODRAFT_404389 [Selaginella moellendorffii]
          Length = 1031

 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 80/352 (22%), Positives = 141/352 (40%), Gaps = 41/352 (11%)

Query: 111 IKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHI 170
           I  +   + K +V G      V+  L       GR K    I R + +    P    ++ 
Sbjct: 176 IDKAFTMLDKAKVRGFKPEVSVYTILTRAFCKTGRLKDALEIFRNIPS----PDAIAYNA 231

Query: 171 LMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVA-RLYTVAETYVEALEKS 229
           ++      ++ +G ++   +M   +V P+  +Y IL      A +    +E   E +++ 
Sbjct: 232 IIHGHCRKNDCDGALEFLKEMNERKVAPDVFTYNILIDGLCKASKTDKASEMLHEMVDRG 291

Query: 230 MTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELP--NVRSK--SYVLAIEAFGRIAQV 285
           +T +   T+    I+ G    GK  ER  + +  +   N R    +Y   I    +   V
Sbjct: 292 VTPD---TVTFNSIMDGLCKAGK-FERAHSLLAVMAERNCRPSCCTYNTLISGLCKQQNV 347

Query: 286 SRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHL 345
            RA++L  E  S   +     Y+ +    CK G ID+A  L+KEMS  GC PN +TY  L
Sbjct: 348 DRAKDLVDEFVSSGFVPDVVTYSILADGLCKRGRIDEAFELVKEMSGKGCTPNLVTYNTL 407

Query: 346 ALGCFKSNLVEEGFKALEL----------------------------GMKLITTKKVRSS 377
             G  K++  E+ ++ LE                              +K++     R  
Sbjct: 408 IDGLCKASKTEKAYELLESLVSSGFVPDVVTYTIIVDGLCKEGRLDKALKMVEGMLKRGC 467

Query: 378 TPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKA 429
           TP + T  +++E     G V  A ++F+E+   + T     Y +L+  Y K+
Sbjct: 468 TPSVITYTALMEGLCRTGRVDEAHHIFKEMVSKDCTADALAYVSLVNGYCKS 519



 Score = 73.2 bits (178), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 85/410 (20%), Positives = 162/410 (39%), Gaps = 52/410 (12%)

Query: 52  VIRERPYRPKELDYSYLLEFTIKNHGISQGEKL---FCCIPKDYQNELL-YNNLVIACLD 107
           V+ ER  RP    Y+ L+    K   + + + L   F  +   +  +++ Y+ L      
Sbjct: 321 VMAERNCRPSCCTYNTLISGLCKQQNVDRAKDLVDEF--VSSGFVPDVVTYSILADGLCK 378

Query: 108 KGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVST 167
           +G I  + E +K+M   G + + + +N LI       + +    +L  + +    P V T
Sbjct: 379 RGRIDEAFELVKEMSGKGCTPNLVTYNTLIDGLCKASKTEKAYELLESLVSSGFVPDVVT 438

Query: 168 FHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALE 227
           + I++     +  ++  +K+   M +    P+ ++Y   A    + R   V E +   + 
Sbjct: 439 YTIIVDGLCKEGRLDKALKMVEGMLKRGCTPSVITY--TALMEGLCRTGRVDEAH--HIF 494

Query: 228 KSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSR 287
           K M   +  T D L                             +YV  +  +    + SR
Sbjct: 495 KEMVSKDC-TADAL-----------------------------AYVSLVNGY---CKSSR 521

Query: 288 AEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLAL 347
            +E    +  ++     + YN+++  YCK G +D+   + ++M+  GC PN  TY  +  
Sbjct: 522 TKEAQKVVDGIRGTPYIDVYNALMDGYCKEGRLDEIPNVFEDMACRGCVPNIKTYNIVMD 581

Query: 348 GCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEEL 407
           G  K   V+E F  LE       +       P + +   II+   +      A  + +++
Sbjct: 582 GLCKHGKVDEAFPFLE-------SMHSAGCVPDVVSYNIIIDGLFKASKPKEARQVLDQM 634

Query: 408 KKANYTKYTFVYNTLIKAYVKAKINDP--NLLRRMILGGARPDAETYSLL 455
            +A        YNTL+  + K +  D    +L+ MI  G  PD  TY+ L
Sbjct: 635 IQAGIPPDAVTYNTLMAQFCKEERFDDAVGILKNMIKAGVDPDNVTYNTL 684



 Score = 72.0 bits (175), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 83/408 (20%), Positives = 165/408 (40%), Gaps = 25/408 (6%)

Query: 56  RPYRPKELDYSYLLEFTIKNHGISQGEKLFCCIPKDYQNELLYNNLVIACLDKGVIKLSL 115
           R ++P+   Y+ L     K   +    ++F  IP    + + YN ++     K     +L
Sbjct: 189 RGFKPEVSVYTILTRAFCKTGRLKDALEIFRNIPS--PDAIAYNAIIHGHCRKNDCDGAL 246

Query: 116 EYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIE 175
           E++K+M     +     +N LI       +      +L +M    V P   TF+ +M   
Sbjct: 247 EFLKEMNERKVAPDVFTYNILIDGLCKASKTDKASEMLHEMVDRGVTPDTVTFNSIMDGL 306

Query: 176 ANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNW 235
                 E    + + M      P+  +Y  L +     +    A+  V+    S  G   
Sbjct: 307 CKAGKFERAHSLLAVMAERNCRPSCCTYNTLISGLCKQQNVDRAKDLVDEFVSS--GFVP 364

Query: 236 STLDVLIILYGYLAKGKDLERIWATVQEL------PNVRSKSYVLAIEAFGRIAQVSRAE 289
             +   I+  G   +G+ ++  +  V+E+      PN+   +Y   I+   + ++  +A 
Sbjct: 365 DVVTYSILADGLCKRGR-IDEAFELVKEMSGKGCTPNL--VTYNTLIDGLCKASKTEKAY 421

Query: 290 ELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGC 349
           EL   + S   +     Y  ++   CK G +DKA  +++ M   GC P+ ITY  L  G 
Sbjct: 422 ELLESLVSSGFVPDVVTYTIIVDGLCKEGRLDKALKMVEGMLKRGCTPSVITYTALMEGL 481

Query: 350 FKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKK 409
            ++  V+E     +   ++++      +  +    +S++  + +      A+ + + ++ 
Sbjct: 482 CRTGRVDEAHHIFK---EMVSKDCTADALAY----VSLVNGYCKSSRTKEAQKVVDGIRG 534

Query: 410 ANYTKYTFVYNTLIKAYVKAKIND--PNLLRRMILGGARPDAETYSLL 455
              T Y  VYN L+  Y K    D  PN+   M   G  P+ +TY+++
Sbjct: 535 ---TPYIDVYNALMDGYCKEGRLDEIPNVFEDMACRGCVPNIKTYNIV 579



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 101/423 (23%), Positives = 176/423 (41%), Gaps = 29/423 (6%)

Query: 44  RALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQGEKLFC-CIPKDYQ-NELLYNNL 101
           +AL+++E +++ R   P  + Y+ L+E   +   + +   +F   + KD   + L Y +L
Sbjct: 454 KALKMVEGMLK-RGCTPSVITYTALMEGLCRTGRVDEAHHIFKEMVSKDCTADALAYVSL 512

Query: 102 VIACLDKGVIKLSLEYMKKMRVLG-HSISYL-VFNRLIILNSSPGRRKTIPNILRQMKAD 159
           V      G  K S     +  V G     Y+ V+N L+      GR   IPN+   M   
Sbjct: 513 V-----NGYCKSSRTKEAQKVVDGIRGTPYIDVYNALMDGYCKEGRLDEIPNVFEDMACR 567

Query: 160 KVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVA 219
              P++ T++I+M        ++        M  +   P+ VSY I+      A     A
Sbjct: 568 GCVPNIKTYNIVMDGLCKHGKVDEAFPFLESMHSAGCVPDVVSYNIIIDGLFKASKPKEA 627

Query: 220 ETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWAT-VQELPNVRSKSYVLAIEA 278
              ++ + ++    +  T + L+  +    +  D   I    ++   +  + +Y   I  
Sbjct: 628 RQVLDQMIQAGIPPDAVTYNTLMAQFCKEERFDDAVGILKNMIKAGVDPDNVTYNTLISG 687

Query: 279 FGRIAQVSRAEELWLEM-QSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKP 337
             +  ++  A EL  EM ++   + A   YN++I   CK G + +A  L+  M+ +G + 
Sbjct: 688 LSQTNRLGDAYELMHEMLRNGCVVSACTTYNTIIDRLCKEGCLKQALLLMDHMTGHGVEA 747

Query: 338 NAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDV 397
           N +TY       F   L +EG +  E    L     +R    +  TT+ I    AE+ D 
Sbjct: 748 NTVTYN-----IFIDRLCKEG-RLDEASSLLSEMDTLRDEVSY--TTVIIGLCKAEQLD- 798

Query: 398 GNAENLFEEL---KKANYTKYTFVYNTLIKAYVKAKINDP--NLLRRMILGGARPDAETY 452
             A  L  E+   K    T +TF  N LI A+ K K  D    LL  M+  G  P   TY
Sbjct: 799 -RASKLAREMVAVKGLCITSHTF--NLLIDAFTKTKRLDEALTLLGLMVQRGCSPSVITY 855

Query: 453 SLL 455
           +++
Sbjct: 856 NMV 858



 Score = 50.8 bits (120), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 87/411 (21%), Positives = 150/411 (36%), Gaps = 92/411 (22%)

Query: 33  INRLRKLQLNKRALEVMEWVIRERPYRPKELD-YSYLLEFTIKNHGISQGEKLF----C- 86
           +N   K    K A +V++  IR  PY    +D Y+ L++   K   + +   +F    C 
Sbjct: 513 VNGYCKSSRTKEAQKVVDG-IRGTPY----IDVYNALMDGYCKEGRLDEIPNVFEDMACR 567

Query: 87  -CIPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGR 145
            C+P    N   YN ++      G +  +  +++ M   G     + +N +I       +
Sbjct: 568 GCVP----NIKTYNIVMDGLCKHGKVDEAFPFLESMHSAGCVPDVVSYNIIIDGLFKASK 623

Query: 146 RKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCI 205
            K    +L QM    + P   T++ LM     +   +  + +  +M ++ V+P+ V+Y  
Sbjct: 624 PKEARQVLDQMIQAGIPPDAVTYNTLMAQFCKEERFDDAVGILKNMIKAGVDPDNVTYNT 683

Query: 206 LATA--------------------HAVARLYTVAETYVEALEKS------------MTGN 233
           L +                       V    T   T ++ L K             MTG+
Sbjct: 684 LISGLSQTNRLGDAYELMHEMLRNGCVVSACTTYNTIIDRLCKEGCLKQALLLMDHMTGH 743

Query: 234 ----NWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSK-SYVLAIEAFGRIAQVSRA 288
               N  T ++ I     L K   L+   + + E+  +R + SY   I    +  Q+ RA
Sbjct: 744 GVEANTVTYNIFI---DRLCKEGRLDEASSLLSEMDTLRDEVSYTTVIIGLCKAEQLDRA 800

Query: 289 EELWLEMQSVKQLKATEQ------------------------------------YNSVIS 312
            +L  EM +VK L  T                                      YN VI+
Sbjct: 801 SKLAREMVAVKGLCITSHTFNLLIDAFTKTKRLDEALTLLGLMVQRGCSPSVITYNMVIT 860

Query: 313 VYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALE 363
             CK   +DKA  L  EM++ G   ++++Y  L  G       +E  + LE
Sbjct: 861 CLCKLDKVDKAWELFDEMAVRGIVASSVSYTVLIYGLCGQGRGKEALQVLE 911


>gi|357521609|ref|XP_003631093.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355525115|gb|AET05569.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 788

 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 92/395 (23%), Positives = 162/395 (41%), Gaps = 44/395 (11%)

Query: 94  NELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNIL 153
           N ++Y+ L+      G +  +L    ++   G  +  + +N LI    S GR + +  +L
Sbjct: 194 NLVMYSALIDGLCKDGFVSDALGLCSQIGERGILLDAVTYNSLIDGCCSVGRWQEVTQLL 253

Query: 154 RQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVA 213
            +M  + V P   TF+IL+     +  I     V + M +   +P+ V+Y      +A+ 
Sbjct: 254 TKMVRENVDPDDYTFNILIDALCKEGRILEAQGVLAMMSKRGEKPDIVTY------NALM 307

Query: 214 RLYTVAETYVEALE--KSMT--GNNWSTLDVLIILYGYLAKGKDLERIWATVQELPN--- 266
             Y   E   EA E    M   G     L+  +++ GY  K K ++      +EL N   
Sbjct: 308 EGYCSRENVHEARELFNRMVKRGLEPDVLNYNVLIDGY-CKTKMVDEAMVLFKELCNKNL 366

Query: 267 -VRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASG 325
                SY   I+      ++S  ++L  EM    Q      YN +I   CK G I +A G
Sbjct: 367 VPTIASYNSLIDGLCNSGRISHVKKLLDEMHGSAQPPDVVTYNILIDALCKEGRILEALG 426

Query: 326 LLKEMSMNGCKPNAITYRHLALG-CFKSN----------LVEEGFKA------------- 361
           +L  M   G KPN +TY  +  G C ++N          +V+ G +              
Sbjct: 427 VLVMMMKKGVKPNIVTYNAMMDGYCLRNNVNVAKDIFNRMVKSGLEPDILNYNVLINGYC 486

Query: 362 ----LELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTF 417
               ++  + L    + ++  P + +  S+I+     G + + + L +E+  +  +    
Sbjct: 487 KTEMVDEAIVLFKEMRHKNLIPDIASYNSLIDGLCNLGRIPHVQELLDEMCDSGQSPDVI 546

Query: 418 VYNTLIKAYVKAKINDPNL-LRRMILGGARPDAET 451
            YN L+ A+ K +  D  + L R I+ G  PD  T
Sbjct: 547 TYNILLDAFCKTQPFDKAISLFRQIVEGIWPDFYT 581



 Score = 65.5 bits (158), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 67/327 (20%), Positives = 131/327 (40%), Gaps = 45/327 (13%)

Query: 132 VFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDM 191
           VF++L+      G   T  ++  Q+++  ++P ++TF IL+    +  +      + + +
Sbjct: 57  VFDKLLGAIVRMGHYPTAISLFTQLQSKGISPSIATFTILINCYFHQSHTAFAFSLLATI 116

Query: 192 KRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKG 251
            +S  +PN V++  +     +  +   A  + + L                     LA+G
Sbjct: 117 LKSGYQPNLVTFNTIINGFCINGMIFKALDFCQNL---------------------LAQG 155

Query: 252 KDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVI 311
              ++              +Y   I    +  Q+  A  L  EM+          Y+++I
Sbjct: 156 YLFDQF-------------TYGTLINGLSKNGQIKAALHLLQEMEKSSVQPNLVMYSALI 202

Query: 312 SVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITT 371
              CK+GF+  A GL  ++   G   +A+TY  L  GC      +E  + L        T
Sbjct: 203 DGLCKDGFVSDALGLCSQIGERGILLDAVTYNSLIDGCCSVGRWQEVTQLL--------T 254

Query: 372 KKVRSSTPWLETTLSI-IEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYV-KA 429
           K VR +    + T +I I+   ++G +  A+ +   + K         YN L++ Y  + 
Sbjct: 255 KMVRENVDPDDYTFNILIDALCKEGRILEAQGVLAMMSKRGEKPDIVTYNALMEGYCSRE 314

Query: 430 KINDP-NLLRRMILGGARPDAETYSLL 455
            +++   L  RM+  G  PD   Y++L
Sbjct: 315 NVHEARELFNRMVKRGLEPDVLNYNVL 341



 Score = 61.6 bits (148), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 75/372 (20%), Positives = 156/372 (41%), Gaps = 19/372 (5%)

Query: 92  YQNELLYNNLVIA--CLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTI 149
           YQ  L+  N +I   C++ G+I  +L++ + +   G+      +  LI   S  G+ K  
Sbjct: 121 YQPNLVTFNTIINGFCIN-GMIFKALDFCQNLLAQGYLFDQFTYGTLINGLSKNGQIKAA 179

Query: 150 PNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSY-CILAT 208
            ++L++M+   V P++  +  L+     D  +   + + S +    +  + V+Y  ++  
Sbjct: 180 LHLLQEMEKSSVQPNLVMYSALIDGLCKDGFVSDALGLCSQIGERGILLDAVTYNSLIDG 239

Query: 209 AHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILY---GYLAKGKDLERIWATVQELP 265
             +V R   V +   + + +++  +++ T ++LI      G + + + +  + +   E P
Sbjct: 240 CCSVGRWQEVTQLLTKMVRENVDPDDY-TFNILIDALCKEGRILEAQGVLAMMSKRGEKP 298

Query: 266 NVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASG 325
           ++   +Y   +E +     V  A EL+  M           YN +I  YCK   +D+A  
Sbjct: 299 DI--VTYNALMEGYCSRENVHEARELFNRMVKRGLEPDVLNYNVLIDGYCKTKMVDEAMV 356

Query: 326 LLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTL 385
           L KE+      P   +Y  L  G   S  +           KL+      +  P + T  
Sbjct: 357 LFKELCNKNLVPTIASYNSLIDGLCNSGRISHV-------KKLLDEMHGSAQPPDVVTYN 409

Query: 386 SIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAY-VKAKIN-DPNLLRRMILG 443
            +I+   ++G +  A  +   + K         YN ++  Y ++  +N   ++  RM+  
Sbjct: 410 ILIDALCKEGRILEALGVLVMMMKKGVKPNIVTYNAMMDGYCLRNNVNVAKDIFNRMVKS 469

Query: 444 GARPDAETYSLL 455
           G  PD   Y++L
Sbjct: 470 GLEPDILNYNVL 481



 Score = 55.5 bits (132), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 70/315 (22%), Positives = 121/315 (38%), Gaps = 52/315 (16%)

Query: 133 FNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMK 192
           +N LI    + GR   +  +L +M      P V T++IL+     +  I   + V   M 
Sbjct: 373 YNSLIDGLCNSGRISHVKKLLDEMHGSAQPPDVVTYNILIDALCKEGRILEALGVLVMMM 432

Query: 193 RSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGK 252
           +  V+PN V+Y  +   + +     VA+     + KS  G     L+  +++ GY  K +
Sbjct: 433 KKGVKPNIVTYNAMMDGYCLRNNVNVAKDIFNRMVKS--GLEPDILNYNVLINGY-CKTE 489

Query: 253 DLERIWATVQEL------PNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQ 306
            ++      +E+      P++   SY   I+    + ++   +EL  EM    Q      
Sbjct: 490 MVDEAIVLFKEMRHKNLIPDI--ASYNSLIDGLCNLGRIPHVQELLDEMCDSGQSPDVIT 547

Query: 307 YNSVISVYCKNGFIDKASGL----------------------------------LKEMSM 332
           YN ++  +CK    DKA  L                                  LK + M
Sbjct: 548 YNILLDAFCKTQPFDKAISLFRQIVEGIWPDFYTNHAIVDNLCKGEKLKMAEDALKHLLM 607

Query: 333 NGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFA 392
           +GC PN  TY  L      + L ++G  +    M L++  +     P   T   II +  
Sbjct: 608 HGCSPNVQTYTILI-----NALCKDG--SFGEAMLLLSKMEDNDRPPDAITFEIIIGVLL 660

Query: 393 EKGDVGNAENLFEEL 407
           ++ +   AE L EE+
Sbjct: 661 QRNETDKAEKLREEM 675


>gi|224093190|ref|XP_002309826.1| predicted protein [Populus trichocarpa]
 gi|222852729|gb|EEE90276.1| predicted protein [Populus trichocarpa]
          Length = 1480

 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 75/348 (21%), Positives = 160/348 (45%), Gaps = 22/348 (6%)

Query: 117 YMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILM--KI 174
           +M+     G+++   V+N ++ + +  GR   +  +L  M+     P + +F+ L+  ++
Sbjct: 243 FMRAEPSAGNTVQ--VYNAMMGVYARRGRFNKVQELLDLMRERGCKPDLVSFNTLINARL 300

Query: 175 EANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNN 234
           +A        +++ ++++RS + P+ ++Y  L +A + A     A    + +E      +
Sbjct: 301 KAGAMMPNLAIELLNEVRRSGLRPDTITYNTLISACSRASNLEEAAKVFDDMEAHHCQPD 360

Query: 235 WSTLDVLIILYGYLAKGKDLERIWATVQE---LPNVRSKSYVLAIEAFGRIAQVSRAEEL 291
             T + +I +YG        E+++  ++     P+  + SY   + AF R   V + +E+
Sbjct: 361 LWTYNAMISVYGRCGLSGKAEQLFNDLESRGFFPD--AVSYNSLLYAFAREGNVEKVKEI 418

Query: 292 WLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFK 351
           W EM  +   K    YN++I +Y K G  + A  L ++M  +G  P+A+TY  L     K
Sbjct: 419 WEEMVKIGFGKDEMTYNTMIHMYGKQGQNELALQLYRDMQSSGRNPDAVTYTVLIDSLGK 478

Query: 352 SNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKAN 411
           +N + E    +    +++ T       P L+T  ++I  +A+ G    AE  F+ + ++ 
Sbjct: 479 TNKIAEAAGVMS---EMLNT----GVKPTLKTYSALICGYAKAGKPVEAEETFDCMLRSG 531

Query: 412 YTKYTFVYNTLIKAYVKAKINDP----NLLRRMILGGARPDAETYSLL 455
                  Y+ ++  ++  + N+P     L + M+  G   D   Y L+
Sbjct: 532 IRPDHLAYSVMLDIHL--RFNEPKRAMTLYKEMLHDGITLDHSLYELM 577



 Score = 55.5 bits (132), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 70/307 (22%), Positives = 133/307 (43%), Gaps = 30/307 (9%)

Query: 132  VFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDM 191
            V+N LI   ++ G  +    I   M  D  +P V T + L++    D  ++ L  V  ++
Sbjct: 815  VWNALIEAYAASGCYERARAIFNTMMRDGPSPTVDTINGLLQALIVDGRLDELYVVVQEL 874

Query: 192  KRSEVEPNEVSYCILATAHAVA-RLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAK 250
            +    + ++ S  ++  A A A  ++ V + Y            + T+ +  ++   L++
Sbjct: 875  QDMGFKISKSSILLMLDAFARAGNIFEVKKIY----HGMKAAGYFPTMHLYRVMARLLSR 930

Query: 251  GKDLERIWATVQEL------PNVRSKSYVL----AIEAFGRIAQV-SRAEELWLEMQSVK 299
            GK +  + A + E+      P++   + VL    AIE F +  QV  R +E  LE     
Sbjct: 931  GKQVRDVEAMLSEMEEAGFKPDLSIWNSVLKMYVAIEDFRKTIQVYQRIKEDGLEPDE-- 988

Query: 300  QLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGF 359
                 + YN++I +YC++   ++   L+ EM + G +P   TY+ L     K  LVE+  
Sbjct: 989  -----DTYNTLIVMYCRDHRPEEGFSLMHEMRVAGLEPKLDTYKSLVASFGKQQLVEQAE 1043

Query: 360  KALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVY 419
            +  E     + +K  +    +  T   +++I+   G    AE LF  +K A         
Sbjct: 1044 ELFE----ELQSKGCKLDRSFYHT---MMKIYRNSGSHSKAERLFSMMKDAGVEPTIATM 1096

Query: 420  NTLIKAY 426
            + L+ +Y
Sbjct: 1097 HLLMVSY 1103



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 46/208 (22%), Positives = 91/208 (43%), Gaps = 11/208 (5%)

Query: 146  RKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCI 205
            RKTI  + +++K D + P   T++ L+ +   DH  E    +  +M+ + +EP   +Y  
Sbjct: 970  RKTI-QVYQRIKEDGLEPDEDTYNTLIVMYCRDHRPEEGFSLMHEMRVAGLEPKLDTYKS 1028

Query: 206  LATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQEL- 264
            L  +    +L   AE   E L+      + S    ++ +Y         ER+++ +++  
Sbjct: 1029 LVASFGKQQLVEQAEELFEELQSKGCKLDRSFYHTMMKIYRNSGSHSKAERLFSMMKDAG 1088

Query: 265  --PNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDK 322
              P + +   ++   ++G   Q   AE++   ++      +T  Y+SVI  Y +NG  + 
Sbjct: 1089 VEPTIATMHLLMV--SYGSSGQPQEAEKVLSNLKETGSNLSTLPYSSVIDAYLRNGDYNI 1146

Query: 323  ASGLLKEMSMNGCKPNAITYRHLALGCF 350
                L +M   G +P+     H    CF
Sbjct: 1147 GIQKLIQMKKEGLEPD-----HRIWTCF 1169



 Score = 38.9 bits (89), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 43/216 (19%), Positives = 84/216 (38%), Gaps = 34/216 (15%)

Query: 272 YVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMS 331
           YV  IEA+GR+    +AE +   ++        + +N++I  Y  +G  ++A  +   M 
Sbjct: 781 YVNVIEAYGRLKLWQKAESVAGNLRQRCITVDRKVWNALIEAYAASGCYERARAIFNTMM 840

Query: 332 MNGCKPNAITYRHLALGCFKSNLVEE-----------GFKALELGMKLITTKKVRSST-- 378
            +G  P   T   L         ++E           GFK  +  + L+     R+    
Sbjct: 841 RDGPSPTVDTINGLLQALIVDGRLDELYVVVQELQDMGFKISKSSILLMLDAFARAGNIF 900

Query: 379 ---------------PWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLI 423
                          P +     +  + +    V + E +  E+++A +     ++N+++
Sbjct: 901 EVKKIYHGMKAAGYFPTMHLYRVMARLLSRGKQVRDVEAMLSEMEEAGFKPDLSIWNSVL 960

Query: 424 KAYVKAKIND----PNLLRRMILGGARPDAETYSLL 455
           K YV   I D      + +R+   G  PD +TY+ L
Sbjct: 961 KMYV--AIEDFRKTIQVYQRIKEDGLEPDEDTYNTL 994


>gi|326503836|dbj|BAK02704.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 399

 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 82/353 (23%), Positives = 148/353 (41%), Gaps = 20/353 (5%)

Query: 16  SWMRE-GFPVHRGEIFHSINRLRKLQLNKRALEVMEWVIRERPYRPKELDYSYLLEFTIK 74
           S MRE G P         ++ L K +  ++A+EV + + RER  R     Y+ ++    K
Sbjct: 38  SEMREHGIPPSATVYNAYLDGLLKARCAEKAVEVYQRMKRERC-RTNTETYTLMINVYGK 96

Query: 75  NHGISQGEKLFCCIPKDYQ------NELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSI 128
           +       K+F    K+ Q      N   Y  LV A   +G+ + + E  ++M+  GH  
Sbjct: 97  SKQPMSAMKVF----KEMQSIGCKANICTYTALVNAFAREGLCEKAEEVFEEMQQAGHEP 152

Query: 129 SYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMK-- 186
               +N L+   S  G  +    I   M+     P  ++++IL+    + +   GL +  
Sbjct: 153 DVYAYNALMEAYSRAGFPQAASEIFSLMQHMGCEPDRASYNILV----DAYGRAGLHREA 208

Query: 187 --VYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIIL 244
             V+  +KR  + P   S+ +L  AHA +      E  +  L KS    +   L+ ++  
Sbjct: 209 EAVFESLKRQGMAPTMKSHMLLLAAHARSGNVARCEEVMAQLHKSGLAPDTIALNAMLNA 268

Query: 245 YGYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKAT 304
           YG   +  D+ER+ A ++        +Y +A+ A+GR   + R E  +  ++        
Sbjct: 269 YGRAGRLDDMERLLAAMERRGTRDVGTYNVAVNAYGRAGYLERMEAAFASLERRGLAADV 328

Query: 305 EQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEE 357
             + S +  Y +     +   + +EM   GC P+A T + L   C     VE+
Sbjct: 329 VTWTSRMGAYARKKEYRRCLEIFEEMVDAGCYPDAGTAKVLVAACSDERQVEQ 381



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 68/301 (22%), Positives = 125/301 (41%), Gaps = 17/301 (5%)

Query: 160 KVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVA 219
           +  P   T+ +L++      ++     V S+M+   + P+   Y         AR    A
Sbjct: 9   RCVPTEDTYALLLRAYCTAGSLHRAEGVISEMREHGIPPSATVYNAYLDGLLKARCAEKA 68

Query: 220 ETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSK----SYVLA 275
               + +++     N  T  ++I +YG   K K         +E+ ++  K    +Y   
Sbjct: 69  VEVYQRMKRERCRTNTETYTLMINVYG---KSKQPMSAMKVFKEMQSIGCKANICTYTAL 125

Query: 276 IEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGC 335
           + AF R     +AEE++ EMQ          YN+++  Y + GF   AS +   M   GC
Sbjct: 126 VNAFAREGLCEKAEEVFEEMQQAGHEPDVYAYNALMEAYSRAGFPQAASEIFSLMQHMGC 185

Query: 336 KPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKG 395
           +P+  +Y  L     ++ L  E     E       + K +   P +++ + ++   A  G
Sbjct: 186 EPDRASYNILVDAYGRAGLHREAEAVFE-------SLKRQGMAPTMKSHMLLLAAHARSG 238

Query: 396 DVGNAENLFEELKKANYTKYTFVYNTLIKAYVKA-KIND-PNLLRRMILGGARPDAETYS 453
           +V   E +  +L K+     T   N ++ AY +A +++D   LL  M   G R D  TY+
Sbjct: 239 NVARCEEVMAQLHKSGLAPDTIALNAMLNAYGRAGRLDDMERLLAAMERRGTR-DVGTYN 297

Query: 454 L 454
           +
Sbjct: 298 V 298


>gi|302775582|ref|XP_002971208.1| hypothetical protein SELMODRAFT_94745 [Selaginella moellendorffii]
 gi|300161190|gb|EFJ27806.1| hypothetical protein SELMODRAFT_94745 [Selaginella moellendorffii]
          Length = 599

 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 104/450 (23%), Positives = 179/450 (39%), Gaps = 75/450 (16%)

Query: 60  PKELDYSYLLEFTIKNHGISQGEKLFC------CIPKDYQNELLYNNLVIACLDKGVIKL 113
           P  + Y+ L+      +      +LF       C P    + + YN ++ A   +G+++ 
Sbjct: 43  PSTVAYTSLIHGLCMANSFDDARELFADMNRRGCPP----SPVTYNVMIDASCKRGMLEE 98

Query: 114 SLEYMKKMRVLGHS---ISY-----------------LVFNRLIILNSSPGRRK--TI-- 149
           + + +KKM   GH    ++Y                 L+FN +  L  +P RR   TI  
Sbjct: 99  ACDLIKKMIEDGHVPDVVTYNTVMDGLCKSSRVEEALLLFNEMERLGCTPNRRSHNTIIL 158

Query: 150 -----------PNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEP 198
                        +  +M+A  + P   ++ IL+   A    +    K++  M  S + P
Sbjct: 159 GLCQQSKIDQACQVFHEMEAKDIPPDSWSYGILIDGLAKAGKLNEAYKLFQRMLDSGITP 218

Query: 199 NEVSYCILATAHAVARLYTVAETYVEALE--KSM--TGNNWSTLDVLIILYGYLAKGKDL 254
           + V+Y ++   H +   YT+ E    ALE  KSM   G   S     I++  +  +GK L
Sbjct: 219 SAVTYNVVI--HGMCLAYTLDE----ALELFKSMRSKGCRPSRFTFNILIDAHCKRGK-L 271

Query: 255 ERIWATVQEL------PNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATE-QY 307
           +  +  ++ +      P+V   +Y   I     IA+V  A  L LE    +Q K T    
Sbjct: 272 DEAFRLLKRMTDDGHVPDV--VTYSTLISGLCSIARVDDARHL-LEDMVKRQCKPTVVTQ 328

Query: 308 NSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMK 367
           N++I   CK G I +A  +L  M  +G  P+ +TY  L  G  ++   E          +
Sbjct: 329 NTLIHGLCKAGRIKEAREVLDAMVSSGQSPDVVTYNTLVHGHCRAGQTER-------ARE 381

Query: 368 LITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYV 427
           L++    R   P + T  +++    +   +  A  +F ++K +      F Y  LI  + 
Sbjct: 382 LLSDMVARGLAPNVVTYTALVSGLCKANRLPEACGVFAQMKSSGCAPNLFTYTALILGFC 441

Query: 428 KAKINDPN--LLRRMILGGARPDAETYSLL 455
            A   D    L   M+  G  PD   Y  L
Sbjct: 442 SAGQVDGGLKLFGEMVCAGISPDHVVYGTL 471



 Score = 61.6 bits (148), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 69/305 (22%), Positives = 127/305 (41%), Gaps = 14/305 (4%)

Query: 156 MKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARL 215
           M    V+P   ++ IL+   A    +     ++  +  S V P+ V+Y  L     +A  
Sbjct: 1   MNERNVSPDSWSYGILIDGLAKAGKLNDARNLFQKLLHSGVTPSTVAYTSLIHGLCMANS 60

Query: 216 YTVAETYVEALEKSMTGNNWSTLDVLI---ILYGYLAKGKDLERIWATVQELPNVRSKSY 272
           +  A      + +     +  T +V+I      G L +  DL +       +P+V   +Y
Sbjct: 61  FDDARELFADMNRRGCPPSPVTYNVMIDASCKRGMLEEACDLIKKMIEDGHVPDV--VTY 118

Query: 273 VLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSM 332
              ++   + ++V  A  L+ EM+ +        +N++I   C+   ID+A  +  EM  
Sbjct: 119 NTVMDGLCKSSRVEEALLLFNEMERLGCTPNRRSHNTIILGLCQQSKIDQACQVFHEMEA 178

Query: 333 NGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFA 392
               P++ +Y  L  G  K+  + E +K  +   +++ +      TP   T   +I    
Sbjct: 179 KDIPPDSWSYGILIDGLAKAGKLNEAYKLFQ---RMLDS----GITPSAVTYNVVIHGMC 231

Query: 393 EKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVK-AKINDP-NLLRRMILGGARPDAE 450
               +  A  LF+ ++        F +N LI A+ K  K+++   LL+RM   G  PD  
Sbjct: 232 LAYTLDEALELFKSMRSKGCRPSRFTFNILIDAHCKRGKLDEAFRLLKRMTDDGHVPDVV 291

Query: 451 TYSLL 455
           TYS L
Sbjct: 292 TYSTL 296



 Score = 47.8 bits (112), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 52/243 (21%), Positives = 103/243 (42%), Gaps = 19/243 (7%)

Query: 99  NNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKA 158
           N L+      G IK + E +  M   G S   + +N L+  +   G+ +    +L  M A
Sbjct: 329 NTLIHGLCKAGRIKEAREVLDAMVSSGQSPDVVTYNTLVHGHCRAGQTERARELLSDMVA 388

Query: 159 DKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVA-RLYT 217
             +AP+V T+  L+      + +     V++ MK S   PN  +Y  L      A ++  
Sbjct: 389 RGLAPNVVTYTALVSGLCKANRLPEACGVFAQMKSSGCAPNLFTYTALILGFCSAGQVDG 448

Query: 218 VAETYVEALEKSMTGNNWSTLDVLIILYGYLA-----KGKDLERIWATVQELPNVRSKS- 271
             + + E +   ++ ++        ++YG LA      G+    +    +   ++RS++ 
Sbjct: 449 GLKLFGEMVCAGISPDH--------VVYGTLAAELCKSGRSARALEILREGRESLRSEAW 500

Query: 272 ----YVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLL 327
               Y  A++      ++  A     +M    QL A E+  S+++  CK+G   +A  +L
Sbjct: 501 GDEVYRFAVDGLLEAGKMEMALGFVRDMVRGGQLPAPERCASLVAGLCKSGQGGEARAVL 560

Query: 328 KEM 330
           +E+
Sbjct: 561 EEI 563


>gi|224134148|ref|XP_002321748.1| predicted protein [Populus trichocarpa]
 gi|222868744|gb|EEF05875.1| predicted protein [Populus trichocarpa]
          Length = 1041

 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 104/418 (24%), Positives = 169/418 (40%), Gaps = 31/418 (7%)

Query: 59  RPKELDYSYLLEFTIKNHGISQGEKLFC------CIPKDYQNELLYNNLVIACLDKGVIK 112
           +P    Y+ ++E  +K    S+ + L         +P  Y   ++ N L       G I+
Sbjct: 408 KPDTQTYNNMIEGYLKEQNTSRVKDLLSEMKKSNLVPTAYTCGMIINGLC----RHGSIE 463

Query: 113 LSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILM 172
            +    + M  LG   + +++  LI  +   GR +    IL+ M    V P V  ++ ++
Sbjct: 464 DASRVFEIMVSLGVKPNAVIYTTLIKGHVQEGRFQEAVRILKVMDKKGVQPDVLCYNSVI 523

Query: 173 KIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTG 232
                   +E       +M    ++PN  +Y  L   +  +    VA+ Y     K M G
Sbjct: 524 IGLCKSRKMEEAKDYLVEMIERGLKPNVYTYGALIHGYCKSGEMQVADRYF----KEMLG 579

Query: 233 NNWSTLDVLI--ILYGYLAKGKDLE-----RIWATVQELPNVRSKSYVLAIEAFGRIAQV 285
              +  DV+   ++ GY  +G   E     R        P+VR+  Y   I    R  ++
Sbjct: 580 CGIAPNDVVCTALIDGYCKEGSTTEATSIFRCMLGRSVHPDVRT--YSALIHGLLRNGKL 637

Query: 286 SRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHL 345
             A EL  E      +     YNS+IS +CK G I KA  L + M   G  PN ITY  L
Sbjct: 638 QGAMELLSEFLEKGLVPDVFTYNSIISGFCKQGGIGKAFQLHEYMCQKGISPNIITYNAL 697

Query: 346 ALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFE 405
             G  K+  +E   +A EL    I  K +  +     T  +II+ + + G++  A  LF+
Sbjct: 698 INGLCKAGEIE---RAREL-FDGIPGKGLAHNAV---TYATIIDGYCKSGNLSKAFRLFD 750

Query: 406 ELKKANYTKYTFVYNTLIKAYVKAKINDPNLLRRMILGGARPDAETYSLLKLAEQFQK 463
           E+        +FVY+ LI    + + N    L   +    +  A T SL  L + F K
Sbjct: 751 EMTLKGVPPDSFVYSALIDG-CRKEGNTEKALSLFLESVQKGFASTSSLNALMDGFCK 807



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 51/185 (27%), Positives = 78/185 (42%), Gaps = 9/185 (4%)

Query: 271 SYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEM 330
           +Y   I A  R       + L  EM+      +   YN VI   C+ G +D+A  L K M
Sbjct: 238 TYTHLINAHFRAGNAKEGKRLLFEMEEKGCSPSLVTYNVVIGGLCRAGEVDEAFELKKLM 297

Query: 331 SMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEI 390
              G   +  TY  L  G  K     E     +L ++ + +K ++   P      ++I+ 
Sbjct: 298 DKKGLVADVFTYSILIDGFGKQKRCTEA----KLMLEEMFSKGLK---PGHVAYTALIDG 350

Query: 391 FAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKIND--PNLLRRMILGGARPD 448
           F  +GD G A  + EE+         F YN L+K   K    +    LL  MI+ G +PD
Sbjct: 351 FMRQGDSGEAFRVKEEMLARGVKLNLFTYNALVKGVCKFGDMEKADALLNEMIMVGIKPD 410

Query: 449 AETYS 453
            +TY+
Sbjct: 411 TQTYN 415



 Score = 53.9 bits (128), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 49/185 (26%), Positives = 80/185 (43%), Gaps = 9/185 (4%)

Query: 271 SYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEM 330
           +Y   I+ F R      A  +  EM +         YN+++   CK G ++KA  LL EM
Sbjct: 343 AYTALIDGFMRQGDSGEAFRVKEEMLARGVKLNLFTYNALVKGVCKFGDMEKADALLNEM 402

Query: 331 SMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEI 390
            M G KP+  TY ++  G  K    E+    ++    L++  K  +  P   T   II  
Sbjct: 403 IMVGIKPDTQTYNNMIEGYLK----EQNTSRVK---DLLSEMKKSNLVPTAYTCGMIING 455

Query: 391 FAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVK-AKINDP-NLLRRMILGGARPD 448
               G + +A  +FE +          +Y TLIK +V+  +  +   +L+ M   G +PD
Sbjct: 456 LCRHGSIEDASRVFEIMVSLGVKPNAVIYTTLIKGHVQEGRFQEAVRILKVMDKKGVQPD 515

Query: 449 AETYS 453
              Y+
Sbjct: 516 VLCYN 520



 Score = 50.1 bits (118), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 72/373 (19%), Positives = 137/373 (36%), Gaps = 53/373 (14%)

Query: 98  YNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMK 157
           Y  L+   + +G    +    ++M   G  ++   +N L+      G  +    +L +M 
Sbjct: 344 YTALIDGFMRQGDSGEAFRVKEEMLARGVKLNLFTYNALVKGVCKFGDMEKADALLNEMI 403

Query: 158 ADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSE---------------------- 195
              + P   T++ +++    + N   +  + S+MK+S                       
Sbjct: 404 MVGIKPDTQTYNNMIEGYLKEQNTSRVKDLLSEMKKSNLVPTAYTCGMIINGLCRHGSIE 463

Query: 196 -------------VEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLI 242
                        V+PN V Y  L   H     +  A   ++ ++K     +    + +I
Sbjct: 464 DASRVFEIMVSLGVKPNAVIYTTLIKGHVQEGRFQEAVRILKVMDKKGVQPDVLCYNSVI 523

Query: 243 ILYGYLAKGKDLERIWATVQEL------PNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQ 296
           I    L K + +E     + E+      PNV   +Y   I  + +  ++  A+  + EM 
Sbjct: 524 I---GLCKSRKMEEAKDYLVEMIERGLKPNVY--TYGALIHGYCKSGEMQVADRYFKEML 578

Query: 297 SVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVE 356
                       ++I  YCK G   +A+ + + M      P+  TY  L  G  ++    
Sbjct: 579 GCGIAPNDVVCTALIDGYCKEGSTTEATSIFRCMLGRSVHPDVRTYSALIHGLLRNG--- 635

Query: 357 EGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYT 416
                L+  M+L++    +   P + T  SII  F ++G +G A  L E + +   +   
Sbjct: 636 ----KLQGAMELLSEFLEKGLVPDVFTYNSIISGFCKQGGIGKAFQLHEYMCQKGISPNI 691

Query: 417 FVYNTLIKAYVKA 429
             YN LI    KA
Sbjct: 692 ITYNALINGLCKA 704


>gi|356508736|ref|XP_003523110.1| PREDICTED: pentatricopeptide repeat-containing protein At5g42310,
           mitochondrial-like [Glycine max]
          Length = 680

 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 93/421 (22%), Positives = 185/421 (43%), Gaps = 33/421 (7%)

Query: 43  KRALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQG--EKLFCCIPKDYQ--NELLY 98
           ++AL +M  + R+  Y+P  ++YS ++++  +++ I     +KL+  I  D    +  L 
Sbjct: 186 EKALNLMSKMRRDG-YQPDFVNYSSIIQYLTRSNKIDSPILQKLYAEIETDKIEIDGHLM 244

Query: 99  NNLVIACLDKGVIKLSLEY--MKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQM 156
           N++++     G    ++ +  M +   L    S LV   L + NS  GR      +  ++
Sbjct: 245 NDIIVGFSKAGDPTRAMRFLAMAQSNGLNPKPSTLVAVILALGNS--GRTHEAEALFEEI 302

Query: 157 KADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLY 216
           + + + P    ++ L+K      +++    V S+M+++ V+P+E +Y +L   +A A  +
Sbjct: 303 RENGLEPRTRAYNALLKGYVRTGSLKDAEFVVSEMEKAGVKPDEQTYSLLIDVYAHAGRW 362

Query: 217 TVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWA-TVQELPNVRSKS---- 271
             A   ++ +E S    N        IL  Y  KG+     W  + Q L +++S      
Sbjct: 363 ESARIVLKEMEASNVQPNSYVFSR--ILANYRDKGE-----WQKSFQVLKDMKSSGVQPD 415

Query: 272 ---YVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLK 328
              Y + I+ FG+   +  A   +  M S         +N++I  +CK+G  D A  L  
Sbjct: 416 RHFYNVMIDTFGKYNCLDHAMATFERMLSEGIPPDIVTWNTLIDCHCKSGRHDMAEELFS 475

Query: 329 EMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSII 388
           EM   G  P   TY  +      +++ E+  +  E     ++  + +   P   T  +++
Sbjct: 476 EMQQRGYSPCITTYNIMI-----NSMGEQ--QRWEQVTAFLSKMQSQGLQPNSITYTTLV 528

Query: 389 EIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKIND--PNLLRRMILGGAR 446
           +++ + G   +A    E LK   +   + +YN LI AY +  +++   N  R M   G  
Sbjct: 529 DVYGKSGRFSDAIECLEVLKSTGFKPTSTMYNALINAYAQRGLSELAVNAFRLMTTEGLT 588

Query: 447 P 447
           P
Sbjct: 589 P 589



 Score = 62.0 bits (149), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 55/216 (25%), Positives = 92/216 (42%), Gaps = 37/216 (17%)

Query: 272 YVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMS 331
           Y + I A GR  ++  A  L     S +Q+     YN++I    +NG ++KA  L+ +M 
Sbjct: 142 YSILINALGRSEKLYEAFLL-----SQRQVLTPLTYNALIGACARNGDVEKALNLMSKMR 196

Query: 332 MNGCKPNAITYRHLALGCFKSNLVEE---------------------------GF-KALE 363
            +G +P+ + Y  +     +SN ++                            GF KA +
Sbjct: 197 RDGYQPDFVNYSSIIQYLTRSNKIDSPILQKLYAEIETDKIEIDGHLMNDIIVGFSKAGD 256

Query: 364 L--GMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNT 421
               M+ +   +     P   T +++I      G    AE LFEE+++      T  YN 
Sbjct: 257 PTRAMRFLAMAQSNGLNPKPSTLVAVILALGNSGRTHEAEALFEEIRENGLEPRTRAYNA 316

Query: 422 LIKAYVK-AKINDPN-LLRRMILGGARPDAETYSLL 455
           L+K YV+   + D   ++  M   G +PD +TYSLL
Sbjct: 317 LLKGYVRTGSLKDAEFVVSEMEKAGVKPDEQTYSLL 352



 Score = 47.4 bits (111), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 65/305 (21%), Positives = 122/305 (40%), Gaps = 34/305 (11%)

Query: 167 TFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILA---------TAHAVARLYT 217
           T++ L+   A + ++E  + + S M+R   +P+ V+Y  +           +  + +LY 
Sbjct: 171 TYNALIGACARNGDVEKALNLMSKMRRDGYQPDFVNYSSIIQYLTRSNKIDSPILQKLYA 230

Query: 218 VAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLE--RIWATVQELP-NVRSKSYVL 274
             ET    ++  +  +         I+ G+   G      R  A  Q    N +  + V 
Sbjct: 231 EIETDKIEIDGHLMND---------IIVGFSKAGDPTRAMRFLAMAQSNGLNPKPSTLVA 281

Query: 275 AIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNG 334
            I A G   +   AE L+ E++       T  YN+++  Y + G +  A  ++ EM   G
Sbjct: 282 VILALGNSGRTHEAEALFEEIRENGLEPRTRAYNALLKGYVRTGSLKDAEFVVSEMEKAG 341

Query: 335 CKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSST--PWLETTLSIIEIFA 392
            KP+  TY         S L++    A       I  K++ +S   P       I+  + 
Sbjct: 342 VKPDEQTY---------SLLIDVYAHAGRWESARIVLKEMEASNVQPNSYVFSRILANYR 392

Query: 393 EKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKINDPNL--LRRMILGGARPDAE 450
           +KG+   +  + +++K +        YN +I  + K    D  +    RM+  G  PD  
Sbjct: 393 DKGEWQKSFQVLKDMKSSGVQPDRHFYNVMIDTFGKYNCLDHAMATFERMLSEGIPPDIV 452

Query: 451 TYSLL 455
           T++ L
Sbjct: 453 TWNTL 457



 Score = 41.2 bits (95), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 44/237 (18%), Positives = 94/237 (39%), Gaps = 10/237 (4%)

Query: 105 CLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPH 164
           CLD  +        ++M   G     + +N LI  +   GR      +  +M+    +P 
Sbjct: 431 CLDHAMATF-----ERMLSEGIPPDIVTWNTLIDCHCKSGRHDMAEELFSEMQQRGYSPC 485

Query: 165 VSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVE 224
           ++T++I++         E +    S M+   ++PN ++Y  L   +  +  ++ A   +E
Sbjct: 486 ITTYNIMINSMGEQQRWEQVTAFLSKMQSQGLQPNSITYTTLVDVYGKSGRFSDAIECLE 545

Query: 225 ALEKSMTGNNWSTLDVLIILY---GYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGR 281
            L+ +      +  + LI  Y   G      +  R+  T    P++ + + +  I AFG 
Sbjct: 546 VLKSTGFKPTSTMYNALINAYAQRGLSELAVNAFRLMTTEGLTPSLLALNSL--INAFGE 603

Query: 282 IAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPN 338
             + + A  +   M+          Y +++    +     K   + +EM  +GC P+
Sbjct: 604 DRRDAEAFAVLQYMKENNIEPDVVTYTTLMKALIRVEKFQKVPAVYEEMVASGCTPD 660


>gi|359486048|ref|XP_002270184.2| PREDICTED: pentatricopeptide repeat-containing protein At1g10910,
           chloroplastic [Vitis vinifera]
 gi|298204537|emb|CBI23812.3| unnamed protein product [Vitis vinifera]
          Length = 659

 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 64/248 (25%), Positives = 118/248 (47%), Gaps = 24/248 (9%)

Query: 192 KRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMT--------GNNWSTLDVLII 243
           K S++EP  VS       H+V   Y   ++ +  +++S          G+     D+ +I
Sbjct: 50  KESQIEPTHVSVTPRKRCHSVG--YKARQSAILEVQQSSDLGSALARLGDMLKVQDLNVI 107

Query: 244 L--YGYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQL 301
           L  +G L + +DL +++  +Q+   +   SY   I+  G+     +A E++  +Q     
Sbjct: 108 LRHFGKLCRWQDLSQLFDWMQKHEKITFSSYSTYIKFMGKSLNPIKALEIYNSIQDESVR 167

Query: 302 KATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGF-K 360
                 NSV+S   +NG  + +  L  +M  +G +P+A+TY  L  GC K   V+ G+ K
Sbjct: 168 NNVSVCNSVLSCLIRNGKFENSLKLFHQMKQDGLRPDAVTYSTLLAGCMK---VKHGYSK 224

Query: 361 ALELGMKLITTKKVRSSTPWLETTL--SIIEIFAEKGDVGNAENLFEELKKANYTKYTFV 418
           ALEL  ++      RS  P +++ +  +++ + A       AEN F ++K   +    F 
Sbjct: 225 ALELVQEM-----ERSRLP-MDSVIYGTLLAVCASNNRCKEAENYFNQMKDEGHLPNVFH 278

Query: 419 YNTLIKAY 426
           Y++L+ AY
Sbjct: 279 YSSLLNAY 286



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 72/311 (23%), Positives = 135/311 (43%), Gaps = 17/311 (5%)

Query: 152 ILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSY-CILATAH 210
           I   ++ + V  +VS  + ++     +   E  +K++  MK+  + P+ V+Y  +LA   
Sbjct: 157 IYNSIQDESVRNNVSVCNSVLSCLIRNGKFENSLKLFHQMKQDGLRPDAVTYSTLLAGCM 216

Query: 211 AVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQE---LPNV 267
            V   Y+ A   V+ +E+S    +      L+ +     + K+ E  +  +++   LPNV
Sbjct: 217 KVKHGYSKALELVQEMERSRLPMDSVIYGTLLAVCASNNRCKEAENYFNQMKDEGHLPNV 276

Query: 268 RSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLL 327
              S +L   A+       +A+ L  +M+S   +       +++ VY + G  +K+  LL
Sbjct: 277 FHYSSLL--NAYSADGDYKKADMLVQDMKSAGLVPNKVILTTLLKVYVRGGLFEKSRELL 334

Query: 328 KEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSI 387
            E+   G   + + Y  L  G  KS  + E     E     +  K+V+S          +
Sbjct: 335 AELEDLGYAEDEMPYCLLMDGLAKSRRILEAKSIFE----EMKKKQVKSDGYCYSI---M 387

Query: 388 IEIFAEKGDVGNAENLFEELKKANYTKYTFVY-NTLIKAYVKAKINDP--NLLRRMILGG 444
           I  F   G +  A+ L  +  +A Y KY  V  NT++ AY +A   +    ++R+M    
Sbjct: 388 ISAFCRSGLLKEAKQLARDF-EATYDKYDLVMLNTMLCAYCRAGEMESVMQMMRKMDELA 446

Query: 445 ARPDAETYSLL 455
             PD  T+ +L
Sbjct: 447 ISPDWNTFHIL 457



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 58/294 (19%), Positives = 129/294 (43%), Gaps = 14/294 (4%)

Query: 53  IRERPYRPKELDYSYLLEFTIK-NHGISQGEKLFCCIPKDY--QNELLYNNLVIACLDKG 109
           +++   RP  + YS LL   +K  HG S+  +L   + +     + ++Y  L+  C    
Sbjct: 196 MKQDGLRPDAVTYSTLLAGCMKVKHGYSKALELVQEMERSRLPMDSVIYGTLLAVCASNN 255

Query: 110 VIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFH 169
             K +  Y  +M+  GH  +   ++ L+   S+ G  K    +++ MK+  + P+     
Sbjct: 256 RCKEAENYFNQMKDEGHLPNVFHYSSLLNAYSADGDYKKADMLVQDMKSAGLVPNKVILT 315

Query: 170 ILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKS 229
            L+K+       E   ++ ++++      +E+ YC+L    A +R    A++  E ++K 
Sbjct: 316 TLLKVYVRGGLFEKSRELLAELEDLGYAEDEMPYCLLMDGLAKSRRILEAKSIFEEMKKK 375

Query: 230 MTGNNWSTLDVLIILY---GYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVS 286
              ++     ++I  +   G L + K L R +    +  ++   + +L   A+ R  ++ 
Sbjct: 376 QVKSDGYCYSIMISAFCRSGLLKEAKQLARDFEATYDKYDLVMLNTMLC--AYCRAGEM- 432

Query: 287 RAEELWLEMQSVKQLKATEQYNS---VISVYCKNGFIDKASGLLKEMSMNGCKP 337
             E +   M+ + +L  +  +N+   +I  +CK      A   +++M   G +P
Sbjct: 433 --ESVMQMMRKMDELAISPDWNTFHILIKYFCKEKLYLLAYRTMEDMHNKGHQP 484


>gi|222629056|gb|EEE61188.1| hypothetical protein OsJ_15186 [Oryza sativa Japonica Group]
          Length = 897

 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 76/362 (20%), Positives = 141/362 (38%), Gaps = 84/362 (23%)

Query: 96  LLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQ 155
           ++YN L+    D+G +  +L Y  +M   G +++   +N L+      GR      ++ +
Sbjct: 587 VMYNALIGGYCDQGKLDTALLYRDRMVERGVAMTVATYNLLVHALFMDGRGTEAYELVEE 646

Query: 156 MKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARL 215
           M    +AP V T++IL+     + N++  ++++ +M R  V    V+Y  L   +A+++ 
Sbjct: 647 MGGKGLAPDVFTYNILINGHCKEGNVKKALEIFENMSRRGVRATVVTYTAL--IYALSKK 704

Query: 216 YTVAET---YVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSKSY 272
             V ET   + EA+ + +  +        ++LY  L                        
Sbjct: 705 GQVQETDKLFDEAVRRGIRPD--------LVLYNAL------------------------ 732

Query: 273 VLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSM 332
              I +      + RA E+  EM+  +       YN+++   C  G +D+A  L+ EM+ 
Sbjct: 733 ---INSHSTSGNIDRAFEIMGEMEKKRIAPDDVTYNTLMRGLCLLGRVDEARKLIDEMTE 789

Query: 333 NGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFA 392
            G +P+ +TY  L  G                                          ++
Sbjct: 790 RGIQPDLVTYNTLISG------------------------------------------YS 807

Query: 393 EKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKINDP--NLLRRMILGGARPDAE 450
            KGDV +A  +  E+    +      YN LI+   K    D   N+++ M+  G  PD  
Sbjct: 808 MKGDVKDALRIRNEMMNKGFNPTLLTYNALIQGLCKNGQGDDAENMVKEMVENGITPDDS 867

Query: 451 TY 452
           TY
Sbjct: 868 TY 869


>gi|326513552|dbj|BAJ87795.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 538

 Score = 76.6 bits (187), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 77/320 (24%), Positives = 137/320 (42%), Gaps = 20/320 (6%)

Query: 144 GRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSY 203
           GR      +L +M    V  +   ++ L+       N   + +V  +M+   VEP   +Y
Sbjct: 147 GRMDDARRLLDEMPRHGVKLNACCYNPLLDTYTRQKNDARVAEVLKEMESGGVEPTVGTY 206

Query: 204 CILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQE 263
            IL    + A   +  E+  + +++     +      +I  Y    +  ++ R      E
Sbjct: 207 TILVDGLSTAGDISKVESVFDEIKRKNVAGDVYFYSAVINAY---CRAGNVRRASEVFDE 263

Query: 264 L------PNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKN 317
                  PN R+  Y   I  F +I Q+  AE L  +MQ          +N++I  YC++
Sbjct: 264 CVGNGIEPNERT--YGALINGFCKIGQIEAAEMLLTDMQLRGVGHNQIIFNTMIDGYCRH 321

Query: 318 GFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSS 377
           G +DKA  +   M   G + +  TY  LA G  + N +E+  K L     ++T   V S+
Sbjct: 322 GMVDKALEIKAVMERMGIQLDVYTYNTLACGLCRVNRMEDAKKLLH----IMTENGVESN 377

Query: 378 TPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKA-KINDPNL 436
             ++  T ++I I +++GD+  A  LF +++          YN +I  Y+K+  I +   
Sbjct: 378 --YVSYT-TLISIHSKEGDMVEARRLFRDMEGKGSRPSVVTYNVMIDGYIKSGSIREAER 434

Query: 437 LRR-MILGGARPDAETYSLL 455
            ++ M   G  PD  TY+ L
Sbjct: 435 FKKEMEKKGLVPDVYTYAAL 454



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 80/349 (22%), Positives = 139/349 (39%), Gaps = 22/349 (6%)

Query: 116 EYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIE 175
           E +K+M   G   +   +  L+   S+ G    + ++  ++K   VA  V  +  ++   
Sbjct: 189 EVLKEMESGGVEPTVGTYTILVDGLSTAGDISKVESVFDEIKRKNVAGDVYFYSAVINAY 248

Query: 176 ANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNW 235
               N+    +V+ +   + +EPNE +Y  L            AE  +  ++    G+N 
Sbjct: 249 CRAGNVRRASEVFDECVGNGIEPNERTYGALINGFCKIGQIEAAEMLLTDMQLRGVGHNQ 308

Query: 236 STLDVLIILYGYLAKG---KDLERIWATVQELPNVRSKSYVLAIEAFG--RIAQVSRAEE 290
              + +I   GY   G   K LE     V E   ++   Y     A G  R+ ++  A++
Sbjct: 309 IIFNTMID--GYCRHGMVDKALE--IKAVMERMGIQLDVYTYNTLACGLCRVNRMEDAKK 364

Query: 291 LWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCF 350
           L   M           Y ++IS++ K G + +A  L ++M   G +P+ +TY  +  G  
Sbjct: 365 LLHIMTENGVESNYVSYTTLISIHSKEGDMVEARRLFRDMEGKGSRPSVVTYNVMIDGYI 424

Query: 351 KSNLVEEG--FKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELK 408
           KS  + E   FK      K +  K +    P + T  +++      G V  A  LFEE+K
Sbjct: 425 KSGSIREAERFK------KEMEKKGL---VPDVYTYAALVHGHCVNGKVDVALRLFEEMK 475

Query: 409 KANYTKYTFVYNTLIKAYVKAKINDP--NLLRRMILGGARPDAETYSLL 455
           +         Y  LI    K   ++        M+  G  PD   YS+L
Sbjct: 476 QRGAKPNVVAYTALISGLAKEGRSEEAFQFYDNMLAAGLTPDDTLYSML 524



 Score = 39.7 bits (91), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 52/257 (20%), Positives = 106/257 (41%), Gaps = 15/257 (5%)

Query: 43  KRALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQGEKLFCCIPKDYQ------NEL 96
           +RA EV +  +      P E  Y  L+    K   I   E L      D Q      N++
Sbjct: 255 RRASEVFDECV-GNGIEPNERTYGALINGFCKIGQIEAAEMLL----TDMQLRGVGHNQI 309

Query: 97  LYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQM 156
           ++N ++      G++  +LE    M  +G  +    +N L        R +    +L  M
Sbjct: 310 IFNTMIDGYCRHGMVDKALEIKAVMERMGIQLDVYTYNTLACGLCRVNRMEDAKKLLHIM 369

Query: 157 KADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLY 216
             + V  +  ++  L+ I + + ++    +++ DM+     P+ V+Y ++   +  +   
Sbjct: 370 TENGVESNYVSYTTLISIHSKEGDMVEARRLFRDMEGKGSRPSVVTYNVMIDGYIKSGSI 429

Query: 217 TVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSKSYVLAI 276
             AE + + +EK     +  T   L+  +G+   GK ++      +E+    +K  V+A 
Sbjct: 430 REAERFKKEMEKKGLVPDVYTYAALV--HGHCVNGK-VDVALRLFEEMKQRGAKPNVVAY 486

Query: 277 EAF-GRIAQVSRAEELW 292
            A    +A+  R+EE +
Sbjct: 487 TALISGLAKEGRSEEAF 503


>gi|449462543|ref|XP_004149000.1| PREDICTED: pentatricopeptide repeat-containing protein At4g19440,
           chloroplastic-like [Cucumis sativus]
          Length = 822

 Score = 76.6 bits (187), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 63/273 (23%), Positives = 124/273 (45%), Gaps = 5/273 (1%)

Query: 94  NELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNIL 153
           + + YN L++   ++G ++      ++M   G       +N L+    + G+      + 
Sbjct: 522 DRITYNALILGFCNEGKVEGCFRLREEMTKRGIQPDIYTYNFLLRGLCNVGKLDDAIKLW 581

Query: 154 RQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVA 213
            + KA  +  ++ T+ I+M+     + IE +  +++++   ++E N + Y I+  AH   
Sbjct: 582 DEFKASGLISNIHTYGIMMEGYCKANRIEDVENLFNELLSKKMELNSIVYNIIIKAHCQN 641

Query: 214 RLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQE---LPNVRSK 270
                A   +E ++      N +T   LI     +   +D + +   +++   +PNV   
Sbjct: 642 GNVAAALQLLENMKSKGILPNCATYSSLIHGVCNIGLVEDAKHLIDEMRKEGFVPNVVC- 700

Query: 271 SYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEM 330
            Y   I  + ++ Q+  AE  WLEM S         Y  +I  YCK G ++KA+ LL +M
Sbjct: 701 -YTALIGGYCKLGQMDTAESTWLEMISFNIHPNKFTYTVMIDGYCKLGNMEKANNLLIKM 759

Query: 331 SMNGCKPNAITYRHLALGCFKSNLVEEGFKALE 363
             +G  P+ +TY  L  G  K+N ++  FK  +
Sbjct: 760 KESGIVPDVVTYNVLTNGFCKANDMDNAFKVCD 792



 Score = 65.9 bits (159), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 60/228 (26%), Positives = 97/228 (42%), Gaps = 25/228 (10%)

Query: 242 IILYGYLAKG-------KDLERIWATVQE---LPNVRSKSYVLAIEAFGRIAQVSRAEEL 291
           I  Y +L +G        D  ++W   +    + N+ +  Y + +E + +  ++   E L
Sbjct: 558 IYTYNFLLRGLCNVGKLDDAIKLWDEFKASGLISNIHT--YGIMMEGYCKANRIEDVENL 615

Query: 292 WLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFK 351
           + E+ S K    +  YN +I  +C+NG +  A  LL+ M   G  PN  TY  L  G   
Sbjct: 616 FNELLSKKMELNSIVYNIIIKAHCQNGNVAAALQLLENMKSKGILPNCATYSSLIHGVCN 675

Query: 352 SNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKAN 411
             LVE+          LI   +     P +    ++I  + + G +  AE+ + E+   N
Sbjct: 676 IGLVEDA-------KHLIDEMRKEGFVPNVVCYTALIGGYCKLGQMDTAESTWLEMISFN 728

Query: 412 YTKYTFVYNTLIKAYVK----AKINDPNLLRRMILGGARPDAETYSLL 455
                F Y  +I  Y K     K N  NLL +M   G  PD  TY++L
Sbjct: 729 IHPNKFTYTVMIDGYCKLGNMEKAN--NLLIKMKESGIVPDVVTYNVL 774



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 95/406 (23%), Positives = 161/406 (39%), Gaps = 57/406 (14%)

Query: 94  NELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNIL 153
           N + YN ++      G +  + E  +KM V G   +   +  LI           + ++L
Sbjct: 277 NVVTYNCIINGLCQNGRLDNAFELKEKMTVKGVQPNLKTYGALINGLIKLNFFDKVNHVL 336

Query: 154 RQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVS-------YC-- 204
            +M      P+V  F+ L+       NIEG +K+   M    + P  V+       +C  
Sbjct: 337 DEMIGSGFNPNVVVFNNLIDGYCKMGNIEGALKIKDVMISKNITPTSVTLYSLMQGFCKS 396

Query: 205 ------------ILATAHAV--ARLYTVAETYVEALE--------KSMTGNNWSTLDVLI 242
                       IL++  ++     Y+V     +           K M   N+   D+L+
Sbjct: 397 DQIEHAENALEEILSSGLSIHPDNCYSVVHWLCKKFRYHSAFRFTKMMLSRNFRPSDLLL 456

Query: 243 --ILYGYLAKGKDLE--RIWATVQE----LPNVRSKSYVLAIEAFGRIAQVSRAEELWLE 294
             ++ G    GK LE   +W  + E       V S + +  +   G++ + SR  +  LE
Sbjct: 457 TMLVCGLCKDGKHLEATELWFRLLEKGSPASKVTSNALIHGLCGAGKLPEASRIVKEMLE 516

Query: 295 MQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNL 354
            + +   + T  YN++I  +C  G ++    L +EM+  G +P+  TY  L  G     L
Sbjct: 517 -RGLPMDRIT--YNALILGFCNEGKVEGCFRLREEMTKRGIQPDIYTYNFLLRG-----L 568

Query: 355 VEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTK 414
              G   L+  +KL    K       + T   ++E + +   + + ENLF EL       
Sbjct: 569 CNVG--KLDDAIKLWDEFKASGLISNIHTYGIMMEGYCKANRIEDVENLFNELLSKKMEL 626

Query: 415 YTFVYNTLIKAY-----VKAKINDPNLLRRMILGGARPDAETYSLL 455
            + VYN +IKA+     V A +    LL  M   G  P+  TYS L
Sbjct: 627 NSIVYNIIIKAHCQNGNVAAAL---QLLENMKSKGILPNCATYSSL 669



 Score = 55.1 bits (131), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 44/209 (21%), Positives = 91/209 (43%), Gaps = 9/209 (4%)

Query: 145 RRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYC 204
           R + + N+  ++ + K+  +   ++I++K    + N+   +++  +MK   + PN  +Y 
Sbjct: 608 RIEDVENLFNELLSKKMELNSIVYNIIIKAHCQNGNVAAALQLLENMKSKGILPNCATYS 667

Query: 205 ILATAHAVARLYTV--AETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQ 262
            L   H V  +  V  A+  ++ + K     N      LI  Y  L +    E  W  + 
Sbjct: 668 SLI--HGVCNIGLVEDAKHLIDEMRKEGFVPNVVCYTALIGGYCKLGQMDTAESTWLEMI 725

Query: 263 EL---PNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGF 319
                PN    +Y + I+ + ++  + +A  L ++M+    +     YN + + +CK   
Sbjct: 726 SFNIHPN--KFTYTVMIDGYCKLGNMEKANNLLIKMKESGIVPDVVTYNVLTNGFCKAND 783

Query: 320 IDKASGLLKEMSMNGCKPNAITYRHLALG 348
           +D A  +  +M+  G   + ITY  L  G
Sbjct: 784 MDNAFKVCDQMATEGLPVDEITYTTLVHG 812



 Score = 49.7 bits (117), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 48/206 (23%), Positives = 87/206 (42%), Gaps = 35/206 (16%)

Query: 235 WSTLDVLIILYGYLAKGKDLERIWATVQEL-----PNVRSKSYVLAIEAFGRIAQVSRAE 289
           + +L     L   L K  + E+     + +     P+V S + V  I A  +  ++  A 
Sbjct: 206 FPSLKTCNFLLSSLVKANEFEKCCEVFRVMSEGACPDVFSFTNV--INALCKGGKMENAI 263

Query: 290 ELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGC 349
           EL+++M+ +        YN +I+  C+NG +D A  L ++M++ G +PN  TY  L  G 
Sbjct: 264 ELFMKMEKLGISPNVVTYNCIINGLCQNGRLDNAFELKEKMTVKGVQPNLKTYGALINGL 323

Query: 350 FKSN-----------LVEEGFKA-----------------LELGMKLITTKKVRSSTPWL 381
            K N           ++  GF                   +E  +K+      ++ TP  
Sbjct: 324 IKLNFFDKVNHVLDEMIGSGFNPNVVVFNNLIDGYCKMGNIEGALKIKDVMISKNITPTS 383

Query: 382 ETTLSIIEIFAEKGDVGNAENLFEEL 407
            T  S+++ F +   + +AEN  EE+
Sbjct: 384 VTLYSLMQGFCKSDQIEHAENALEEI 409


>gi|8778650|gb|AAF79658.1|AC025416_32 F5O11.4 [Arabidopsis thaliana]
          Length = 975

 Score = 76.6 bits (187), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 86/396 (21%), Positives = 163/396 (41%), Gaps = 37/396 (9%)

Query: 94  NELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNIL 153
           N + ++ L+     +G +  +LE + +M  +GH    +  N L+      G+      ++
Sbjct: 255 NTITFSTLINGLCLEGRVSEALELVDRMVEMGHKPDLITINTLVNGLCLSGKEAEAMLLI 314

Query: 154 RQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVA 213
            +M      P+  T+  ++ +          M++   M+   ++ + V Y I+       
Sbjct: 315 DKMVEYGCQPNAVTYGPVLNVMCKSGQTALAMELLRKMEERNIKLDAVKYSIIIDGLCKH 374

Query: 214 RLYTVAETYVEALEKSMTGNNWSTLDVLIILY---GYLAKGKDLERIWATVQELPNVRSK 270
                A      +E      N  T ++LI  +   G    G  L R     +  PNV + 
Sbjct: 375 GSLDNAFNLFNEMEMKGITTNIITYNILIGGFCNAGRWDDGAKLLRDMIKRKINPNVVT- 433

Query: 271 SYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEM 330
            + + I++F +  ++  AEEL  EM        T  Y S+I  +CK   +DKA+ ++  M
Sbjct: 434 -FSVLIDSFVKEGKLREAEELHKEMIHRGIAPDTITYTSLIDGFCKENHLDKANQMVDLM 492

Query: 331 SMNGCKPNAITYRHLALGCFKSNLVEEGFKAL-----------------------ELGMK 367
              GC PN  T+  L  G  K+N +++G +                         ELG K
Sbjct: 493 VSKGCDPNIRTFNILINGYCKANRIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELG-K 551

Query: 368 LITTKKV------RSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNT 421
           L   K++      R   P + T   +++   + G+   A  +FE+++K+       +YN 
Sbjct: 552 LNVAKELFQEMVSRKVPPNIVTYKILLDGLCDNGESEKALEIFEKIEKSKMELDIGIYNI 611

Query: 422 LIKAYVKA-KINDP-NLLRRMILGGARPDAETYSLL 455
           +I     A K++D  +L   + L G +P  +TY+++
Sbjct: 612 IIHGMCNASKVDDAWDLFCSLPLKGVKPGVKTYNIM 647



 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 80/371 (21%), Positives = 158/371 (42%), Gaps = 22/371 (5%)

Query: 94  NELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNIL 153
           N + Y  ++      G   L++E ++KM      +  + ++ +I      G      N+ 
Sbjct: 325 NAVTYGPVLNVMCKSGQTALAMELLRKMEERNIKLDAVKYSIIIDGLCKHGSLDNAFNLF 384

Query: 154 RQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAV- 212
            +M+   +  ++ T++IL+    N    +   K+  DM + ++ PN V++ +L  +    
Sbjct: 385 NEMEMKGITTNIITYNILIGGFCNAGRWDDGAKLLRDMIKRKINPNVVTFSVLIDSFVKE 444

Query: 213 ARLYTVAETYVEALEKSMTGNN--WSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSK 270
            +L    E + E + + +  +   +++L        +L K   +  +  +    PN+R+ 
Sbjct: 445 GKLREAEELHKEMIHRGIAPDTITYTSLIDGFCKENHLDKANQMVDLMVSKGCDPNIRT- 503

Query: 271 SYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEM 330
            + + I  + +  ++    EL+ +M     +  T  YN++I  +C+ G ++ A  L +EM
Sbjct: 504 -FNILINGYCKANRIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKLNVAKELFQEM 562

Query: 331 SMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEI 390
                 PN +TY+ L  G   +    E  KALE+  K+  +K        +E  + I  I
Sbjct: 563 VSRKVPPNIVTYKILLDGLCDNG---ESEKALEIFEKIEKSK--------MELDIGIYNI 611

Query: 391 ----FAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVK-AKINDPNLL-RRMILGG 444
                     V +A +LF  L           YN +I    K   +++  LL R+M   G
Sbjct: 612 IIHGMCNASKVDDAWDLFCSLPLKGVKPGVKTYNIMIGGLCKKGPLSEAELLFRKMEEDG 671

Query: 445 ARPDAETYSLL 455
             PD  TY++L
Sbjct: 672 HAPDGWTYNIL 682



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 71/355 (20%), Positives = 129/355 (36%), Gaps = 49/355 (13%)

Query: 98  YNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMK 157
           Y+ ++      G +  +     +M + G + + + +N LI    + GR      +LR M 
Sbjct: 364 YSIIIDGLCKHGSLDNAFNLFNEMEMKGITTNIITYNILIGGFCNAGRWDDGAKLLRDMI 423

Query: 158 ADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYT 217
             K+ P+V TF +L+     +  +    +++ +M    + P+ ++Y  L           
Sbjct: 424 KRKINPNVVTFSVLIDSFVKEGKLREAEELHKEMIHRGIAPDTITYTSLIDGFCKENHLD 483

Query: 218 VAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKD-LERIWATVQELPNVRSKSYVLAI 276
            A   V+ +       N  T ++LI  Y    +  D LE             + +Y   I
Sbjct: 484 KANQMVDLMVSKGCDPNIRTFNILINGYCKANRIDDGLELFRKMSLRGVVADTVTYNTLI 543

Query: 277 EAFGRIAQVSRAEELWLEM-----------------------QSVKQLKATEQ------- 306
           + F  + +++ A+EL+ EM                       +S K L+  E+       
Sbjct: 544 QGFCELGKLNVAKELFQEMVSRKVPPNIVTYKILLDGLCDNGESEKALEIFEKIEKSKME 603

Query: 307 -----YNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEG--- 358
                YN +I   C    +D A  L   + + G KP   TY  +  G  K   + E    
Sbjct: 604 LDIGIYNIIIHGMCNASKVDDAWDLFCSLPLKGVKPGVKTYNIMIGGLCKKGPLSEAELL 663

Query: 359 FKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYT 413
           F+ +E        +   +   W    L  I      GD   +  L EELK+  ++
Sbjct: 664 FRKME--------EDGHAPDGWTYNIL--IRAHLGDGDATKSVKLIEELKRCGFS 708


>gi|449520323|ref|XP_004167183.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
           mitochondrial-like [Cucumis sativus]
          Length = 605

 Score = 76.6 bits (187), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 86/325 (26%), Positives = 132/325 (40%), Gaps = 33/325 (10%)

Query: 155 QMKADKVAPHVSTFHILMKIEANDHNI-EGLMKVYSDMKRSEVEPNEVSYCILATAHAVA 213
           QM+   ++P   T +IL+    N + + EGL  +   ++R  + P+ V+Y  L     + 
Sbjct: 121 QMRLSGISPDCCTLNILLNCLCNVNRVGEGLAVMAGILRRGYI-PDIVTYTTLIKGLCME 179

Query: 214 RLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKG----KDLERIWATVQELPNVRS 269
              + A      ++K     N        I YG L KG     ++       QE+ N  S
Sbjct: 180 HRISKAALLFTRMQKLGCTPNA-------ITYGTLMKGLCRTGNISIALKLHQEMLNDSS 232

Query: 270 K----------SYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGF 319
                      SY + I+A  +  +   A +L+ EM+          Y S+I  +C  G 
Sbjct: 233 LYGINFKPVVISYSIIIDALCKDRREDEARDLFEEMKVQGMTPTVISYTSLIHGFCCGGK 292

Query: 320 IDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTP 379
            ++A  L  EM   G +PN +T+  L     K   V E    LE+ ++       R   P
Sbjct: 293 WEEAKRLFNEMVNQGVQPNVVTFNVLIDVLCKEGKVIEAKDLLEVMIQ-------RGIVP 345

Query: 380 WLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVK-AKINDP-NLL 437
            L T  S+IE F   GD+ +A  LF  +           Y  LI  Y K +K+ +   L 
Sbjct: 346 NLLTYNSLIEGFCLVGDLNSARELFVSMPSKGCEPDVICYTVLINGYCKTSKVEEAMKLY 405

Query: 438 RRMILGGARPDAETYSLLKLAEQFQ 462
             M+  G RPD +TY  L L   FQ
Sbjct: 406 NGMLQVGKRPDVKTYGAL-LTGLFQ 429



 Score = 58.2 bits (139), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 94/434 (21%), Positives = 173/434 (39%), Gaps = 60/434 (13%)

Query: 45  ALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQGEKLFC------CIPKDYQNELLY 98
            L VM  ++R R Y P  + Y+ L++     H IS+   LF       C P    N + Y
Sbjct: 150 GLAVMAGILR-RGYIPDIVTYTTLIKGLCMEHRISKAALLFTRMQKLGCTP----NAITY 204

Query: 99  NNLVIACLDKGVIKLSLEYMKKM----RVLGHSISYLVFNRLIILNS--SPGRRKTIPNI 152
             L+      G I ++L+  ++M     + G +   +V +  II+++     R     ++
Sbjct: 205 GTLMKGLCRTGNISIALKLHQEMLNDSSLYGINFKPVVISYSIIIDALCKDRREDEARDL 264

Query: 153 LRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAV 212
             +MK   + P V ++  L+         E   +++++M    V+PN V++ +L      
Sbjct: 265 FEEMKVQGMTPTVISYTSLIHGFCCGGKWEEAKRLFNEMVNQGVQPNVVTFNVLIDVLCK 324

Query: 213 ARLYTVAETYVEALEKSMTGNNWSTLDVLI---ILYGYLAKGKDLERIWATVQELPNVRS 269
                 A+  +E + +     N  T + LI    L G L   ++L     +    P+V  
Sbjct: 325 EGKVIEAKDLLEVMIQRGIVPNLLTYNSLIEGFCLVGDLNSARELFVSMPSKGCEPDVIC 384

Query: 270 KSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKE 329
             Y + I  + + ++V  A +L+  M  V +    + Y ++++   + G +  A  L   
Sbjct: 385 --YTVLINGYCKTSKVEEAMKLYNGMLQVGKRPDVKTYGALLTGLFQGGKVGDAKKLFGV 442

Query: 330 MSMNGCKPNAITYRHLALGCFKSNLVEEG--FKALELGMKLIT----------------- 370
           M + G   +   Y     G F + L + G  F+A+EL  KL +                 
Sbjct: 443 MKVYGIPGDLYIY-----GIFLNGLCKNGCLFEAMELFNKLKSYNIKLDIECFNCLIDGL 497

Query: 371 TKKVRSSTPW--------------LETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYT 416
            K  +  T W              + T   +I  F   G V  A  LF++++K   T   
Sbjct: 498 CKAGKLETAWELFEKLPQEELQPDVVTYNIMIHEFCRGGQVVKANILFQKMEKNGCTPDK 557

Query: 417 FVYNTLIKAYVKAK 430
             Y TLI+ + ++K
Sbjct: 558 ITYATLIRGFFESK 571



 Score = 52.8 bits (125), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 64/286 (22%), Positives = 116/286 (40%), Gaps = 29/286 (10%)

Query: 94  NELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNIL 153
           N + +N L+     +G +  + + ++ M   G   + L +N LI      G   +   + 
Sbjct: 311 NVVTFNVLIDVLCKEGKVIEAKDLLEVMIQRGIVPNLLTYNSLIEGFCLVGDLNSARELF 370

Query: 154 RQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATA---- 209
             M +    P V  + +L+        +E  MK+Y+ M +    P+  +Y  L T     
Sbjct: 371 VSMPSKGCEPDVICYTVLINGYCKTSKVEEAMKLYNGMLQVGKRPDVKTYGALLTGLFQG 430

Query: 210 ---HAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPN 266
                  +L+ V + Y       + G+ +        +YG    G           EL N
Sbjct: 431 GKVGDAKKLFGVMKVY------GIPGDLY--------IYGIFLNGLCKNGCLFEAMELFN 476

Query: 267 -VRSKSYVLAIEAFG----RIAQVSRAEELWLEMQSVKQLKATEQ---YNSVISVYCKNG 318
            ++S +  L IE F      + +  + E  W   + + Q +       YN +I  +C+ G
Sbjct: 477 KLKSYNIKLDIECFNCLIDGLCKAGKLETAWELFEKLPQEELQPDVVTYNIMIHEFCRGG 536

Query: 319 FIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALEL 364
            + KA+ L ++M  NGC P+ ITY  L  G F+S  +E+  + L +
Sbjct: 537 QVVKANILFQKMEKNGCTPDKITYATLIRGFFESKKLEKVVELLHM 582


>gi|449518511|ref|XP_004166285.1| PREDICTED: pentatricopeptide repeat-containing protein At2g31400,
           chloroplastic-like [Cucumis sativus]
          Length = 868

 Score = 76.6 bits (187), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 58/255 (22%), Positives = 114/255 (44%), Gaps = 5/255 (1%)

Query: 94  NELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNIL 153
           + + YN+L+  C   G+ + +     +M   G       +N L+      G+      I+
Sbjct: 292 DRITYNSLLAVCSRGGLWEAARNLFNEMIDRGIDQDVFTYNTLLDAVCKGGQMDLAYEIM 351

Query: 154 RQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVA 213
            +M   K+ P+V T+  +    A    +E  + +Y++MK   +  + VSY  L + +A  
Sbjct: 352 LEMPGKKILPNVVTYSTMADGYAKAGRLEDALNLYNEMKFLGIGLDRVSYNTLLSIYAKL 411

Query: 214 RLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQE---LPNVRSK 270
             +  A    + +  S    +  T + L+  YG   K  ++ R++  +++    PN+ + 
Sbjct: 412 GRFEDALKVCKEMGSSGVKKDVVTYNALLDGYGKQGKFNEVTRVFKEMKKDRVFPNLLT- 470

Query: 271 SYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEM 330
            Y   I+ + + +    A E++ E +          Y+ +I+  CKNG +D A  LL EM
Sbjct: 471 -YSTLIDVYSKGSLYEEAMEVFREFKQAGLKADVVLYSELINALCKNGLVDSAVLLLDEM 529

Query: 331 SMNGCKPNAITYRHL 345
           +  G +PN +TY  +
Sbjct: 530 TKEGIRPNVVTYNSI 544



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 92/420 (21%), Positives = 169/420 (40%), Gaps = 54/420 (12%)

Query: 18  MREGFPVHRGEI----FHSINRLRKLQLNKRALEVMEWVIRERPYRPKELDYSYLLEFTI 73
           +REG    RG++      ++ RL K++L K    V E  + E  Y      +S L+    
Sbjct: 178 VREGRKNERGKLASAMISTLGRLGKVELAKG---VFETALSE-GYGNTVFAFSALISAYG 233

Query: 74  KNHGISQGEKLFCCIPKD--YQNELLYNNLVIACLDKGV-IKLSLEYMKKMRVLGHSISY 130
           K+    +  K+F  +       N + YN ++ AC   GV  K  +E  ++M   G     
Sbjct: 234 KSGYFDEAIKVFESMKVSGLKPNLVTYNAVIDACGKGGVEFKRVVEIFEEMLRNGVQPDR 293

Query: 131 LVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSD 190
           + +N L+ + S  G  +   N+  +M    +   V T++ L+        ++   ++  +
Sbjct: 294 ITYNSLLAVCSRGGLWEAARNLFNEMIDRGIDQDVFTYNTLLDAVCKGGQMDLAYEIMLE 353

Query: 191 MKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAK 250
           M   ++ PN V+Y  +A  +A A            LE ++  N ++ +  L         
Sbjct: 354 MPGKKILPNVVTYSTMADGYAKAG----------RLEDAL--NLYNEMKFL--------- 392

Query: 251 GKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSV 310
           G  L+R+             SY   +  + ++ +   A ++  EM S    K    YN++
Sbjct: 393 GIGLDRV-------------SYNTLLSIYAKLGRFEDALKVCKEMGSSGVKKDVVTYNAL 439

Query: 311 ISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKAL-ELGMKLI 369
           +  Y K G  ++ + + KEM  +   PN +TY  L     K +L EE  +   E     +
Sbjct: 440 LDGYGKQGKFNEVTRVFKEMKKDRVFPNLLTYSTLIDVYSKGSLYEEAMEVFREFKQAGL 499

Query: 370 TTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKA 429
               V  S         +I    + G V +A  L +E+ K         YN++I A+ ++
Sbjct: 500 KADVVLYS--------ELINALCKNGLVDSAVLLLDEMTKEGIRPNVVTYNSIIDAFGRS 551



 Score = 56.2 bits (134), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 49/192 (25%), Positives = 86/192 (44%), Gaps = 8/192 (4%)

Query: 266 NVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASG 325
           N R K     I   GR+ +V  A+ ++    S         ++++IS Y K+G+ D+A  
Sbjct: 184 NERGKLASAMISTLGRLGKVELAKGVFETALSEGYGNTVFAFSALISAYGKSGYFDEAIK 243

Query: 326 LLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTL 385
           + + M ++G KPN +TY  +   C K  +  E  + +E+  +++         P   T  
Sbjct: 244 VFESMKVSGLKPNLVTYNAVIDACGKGGV--EFKRVVEIFEEMLRN----GVQPDRITYN 297

Query: 386 SIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKINDPNLLRRMILGGA 445
           S++ + +  G    A NLF E+      +  F YNTL+ A  K    D      + + G 
Sbjct: 298 SLLAVCSRGGLWEAARNLFNEMIDRGIDQDVFTYNTLLDAVCKGGQMDLAYEIMLEMPGK 357

Query: 446 R--PDAETYSLL 455
           +  P+  TYS +
Sbjct: 358 KILPNVVTYSTM 369



 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 66/357 (18%), Positives = 133/357 (37%), Gaps = 59/357 (16%)

Query: 106 LDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHV 165
           L KGV + +L         G+  +   F+ LI      G       +   MK   + P++
Sbjct: 205 LAKGVFETALSE-------GYGNTVFAFSALISAYGKSGYFDEAIKVFESMKVSGLKPNL 257

Query: 166 STFHILMKIEANDH-NIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVE 224
            T++ ++          + +++++ +M R+ V+P+ ++Y  L    +   L+  A     
Sbjct: 258 VTYNAVIDACGKGGVEFKRVVEIFEEMLRNGVQPDRITYNSLLAVCSRGGLWEAARNLFN 317

Query: 225 ALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVR----SKSYVLAIEAFG 280
            +       +  T + L+     + KG  ++  +  + E+P  +      +Y    + + 
Sbjct: 318 EMIDRGIDQDVFTYNTLL---DAVCKGGQMDLAYEIMLEMPGKKILPNVVTYSTMADGYA 374

Query: 281 RIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAI 340
           +  ++  A  L+ EM+ +        YN+++S+Y K G  + A  + KEM  +G K + +
Sbjct: 375 KAGRLEDALNLYNEMKFLGIGLDRVSYNTLLSIYAKLGRFEDALKVCKEMGSSGVKKDVV 434

Query: 341 TYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNA 400
           TY  L  G                                          + ++G     
Sbjct: 435 TYNALLDG------------------------------------------YGKQGKFNEV 452

Query: 401 ENLFEELKKANYTKYTFVYNTLIKAYVKAKINDPNL--LRRMILGGARPDAETYSLL 455
             +F+E+KK         Y+TLI  Y K  + +  +   R     G + D   YS L
Sbjct: 453 TRVFKEMKKDRVFPNLLTYSTLIDVYSKGSLYEEAMEVFREFKQAGLKADVVLYSEL 509


>gi|8493575|gb|AAF75798.1|AC011000_1 Contains multiple PPR Repeats PF|01535 [Arabidopsis thaliana]
          Length = 514

 Score = 76.6 bits (187), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 67/297 (22%), Positives = 134/297 (45%), Gaps = 27/297 (9%)

Query: 145 RRKTIPNILRQMKADKVAPHVSTFHILMK--IEANDHNIEGLMKV---------YSDMKR 193
           R +   ++   M +   +P + T + L+     A  H I G  +V         + +M  
Sbjct: 200 RLEDAKHMFDLMVSKGCSPDIITLNTLIDGCCRAKRHLIHGFCQVGNVNVAQDLFQEMIS 259

Query: 194 SEVEPNEVSY-CILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGK 252
           + V P+ V+   +LA      +L    E + +  +KS    + +T +++I     + KG 
Sbjct: 260 NGVSPDIVTCNTLLAGLCENGKLEKALEMF-KVFQKSKMDLDTATCNIII---NGMCKGN 315

Query: 253 DLERIWATVQELP--NVRSK--SYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYN 308
            ++  W     LP   V +   +Y + I  F +     RAE+++LEM     + +T  YN
Sbjct: 316 KVDEAWDLFNSLPVNGVETDVVTYNILIGVFVKEGNFLRAEDIYLEMLCKGIIPSTVTYN 375

Query: 309 SVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKL 368
           S++  +CK   +++A  ++  M   GC P+ +T+  L  G  K+  V++G   LEL  ++
Sbjct: 376 SMVDGFCKQNRLEEARQMVDSMVSEGCSPDVVTFSTLIKGYCKAGRVDDG---LELFSEM 432

Query: 369 ITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKA 425
                V  +  +     ++I  F + GD+  A+++FEE+  +     T  + +++  
Sbjct: 433 CQRGLVADTITY----NALIHGFCKVGDLNGAQDIFEEMVSSGVCPDTITFRSMLAG 485



 Score = 66.6 bits (161), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 78/380 (20%), Positives = 151/380 (39%), Gaps = 64/380 (16%)

Query: 94  NELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNIL 153
           N + +  L+     +G +  +L  + +M   GH    + +  ++      G   +  N+L
Sbjct: 9   NVVTFTTLMNGLCREGRVLQALALVDRMVEEGHQPDAVTYGTIVNGMCKLGDTVSALNML 68

Query: 154 RQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSY-CILATAHAV 212
           R+M   ++  +V  +  ++     D N      ++++M    + PN ++Y C++      
Sbjct: 69  RKMDESQIKANVVIYSAIVDRLCKDGNHIKAQNIFTEMHEKGIFPNVLTYNCMID----- 123

Query: 213 ARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQEL-------- 264
                                            GY + GK     W+  ++L        
Sbjct: 124 ---------------------------------GYCSYGK-----WSDAEQLLRDMIERN 145

Query: 265 --PNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDK 322
             P+V + S +  I AF +  +VS AEEL+ EM        T  Y+S+I  +CK+  ++ 
Sbjct: 146 IDPDVVTFSAL--INAFVKEGKVSGAEELYREMLRRNIFPTTITYSSMIDGFCKHSRLED 203

Query: 323 ASGLLKEMSMNGCKPNAITYRHLALGCFKS--NLVEEGF---KALELGMKLITTKKVRSS 377
           A  +   M   GC P+ IT   L  GC ++  +L+  GF     + +   L         
Sbjct: 204 AKHMFDLMVSKGCSPDIITLNTLIDGCCRAKRHLI-HGFCQVGNVNVAQDLFQEMISNGV 262

Query: 378 TPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKA-KINDP-N 435
           +P + T  +++    E G +  A  +F+  +K+     T   N +I    K  K+++  +
Sbjct: 263 SPDIVTCNTLLAGLCENGKLEKALEMFKVFQKSKMDLDTATCNIIINGMCKGNKVDEAWD 322

Query: 436 LLRRMILGGARPDAETYSLL 455
           L   + + G   D  TY++L
Sbjct: 323 LFNSLPVNGVETDVVTYNIL 342



 Score = 51.6 bits (122), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 59/263 (22%), Positives = 120/263 (45%), Gaps = 15/263 (5%)

Query: 109 GVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTF 168
           G + ++ +  ++M   G S   +  N L+      G+ +    + +  +  K+    +T 
Sbjct: 245 GNVNVAQDLFQEMISNGVSPDIVTCNTLLAGLCENGKLEKALEMFKVFQKSKMDLDTATC 304

Query: 169 HILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAET-YVEALE 227
           +I++      + ++    +++ +  + VE + V+Y IL         +  AE  Y+E L 
Sbjct: 305 NIIINGMCKGNKVDEAWDLFNSLPVNGVETDVVTYNILIGVFVKEGNFLRAEDIYLEMLC 364

Query: 228 KSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQEL------PNVRSKSYVLAIEAFGR 281
           K +     ST+    ++ G+  + + LE     V  +      P+V + S +  I+ + +
Sbjct: 365 KGII---PSTVTYNSMVDGFCKQNR-LEEARQMVDSMVSEGCSPDVVTFSTL--IKGYCK 418

Query: 282 IAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAIT 341
             +V    EL+ EM     +  T  YN++I  +CK G ++ A  + +EM  +G  P+ IT
Sbjct: 419 AGRVDDGLELFSEMCQRGLVADTITYNALIHGFCKVGDLNGAQDIFEEMVSSGVCPDTIT 478

Query: 342 YRHLALG-CFKSNLVEEGFKALE 363
           +R +  G C K+ L ++G   LE
Sbjct: 479 FRSMLAGLCTKAEL-QKGLTMLE 500


>gi|226493231|ref|NP_001140656.1| hypothetical protein [Zea mays]
 gi|194700420|gb|ACF84294.1| unknown [Zea mays]
 gi|414587025|tpg|DAA37596.1| TPA: hypothetical protein ZEAMMB73_567962 [Zea mays]
          Length = 598

 Score = 76.6 bits (187), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 81/366 (22%), Positives = 152/366 (41%), Gaps = 28/366 (7%)

Query: 101 LVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADK 160
           L  AC  +G  + +LE +  MR  G   + + +N +I      G       +L  + +  
Sbjct: 205 LQAACKGRG-YRQALELIDFMRAEGCEPNNVTYNVIIDAMCREGDVDQARELLNSLPSRG 263

Query: 161 VAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAE 220
             P+   ++ ++K   +        ++  +M R    PNE +  ++        L     
Sbjct: 264 CKPNTVNYNTVLKGFCSIERWVDADEILDEMVRENCPPNEATLNVIINTLCRKGLLQKVT 323

Query: 221 TYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRS-------KSYV 273
            Y+E + K     N  T + +I   G   +G     + + ++ L N++S        +Y 
Sbjct: 324 LYLEKMSKHGCTANVVTYNAVI--SGMCEQGN----VDSALELLSNMQSFGCKPDIVTYN 377

Query: 274 LAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMN 333
             ++      +   AEEL ++M    +L     +N++IS +C+ G I +A  + K+M   
Sbjct: 378 TVLKGLCSADRWEDAEELMIKMSQNDRLPDNSTFNTIISFWCQKGLILQAFEVFKQMPEK 437

Query: 334 GCKPNAITYRHLALGCFKSNLVEEGFKAL-ELGMKLITTKKV-RSSTPWLETTLSIIEIF 391
           GC PN+ TY  +  G  K+  +E+  + L E+  K   T K+ R  T  L     I E+ 
Sbjct: 438 GCNPNSTTYSTIIGGLTKAGKMEQALELLNEMANKGFNTDKMYRVLTESLNKEDKIEEVV 497

Query: 392 AEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKIND--PNLLRRMILGGARPDA 449
                      +  +L+ +  +  T +YNT++    +    D   ++L  M+  G  PD 
Sbjct: 498 ----------QVVHKLQDSGISPQTVLYNTVLLGLCRNGKTDYAIDVLADMVSCGCMPDE 547

Query: 450 ETYSLL 455
            TY +L
Sbjct: 548 STYIIL 553



 Score = 68.9 bits (167), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 82/343 (23%), Positives = 141/343 (41%), Gaps = 28/343 (8%)

Query: 98  YNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMK 157
           Y  LV      G+++ +   +  M     + S    N LI      GR      +L  M 
Sbjct: 131 YGALVDGYCRAGLLEDARRVVGGMPAHVQASSAYAHNPLIHALCERGRVADALVVLDGML 190

Query: 158 ADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYT 217
               AP V T++IL++           +++   M+    EPN V+Y ++  A        
Sbjct: 191 CRGCAPDVVTYNILLQAACKGRGYRQALELIDFMRAEGCEPNNVTYNVIIDAMCREGDVD 250

Query: 218 VAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQEL----------PNV 267
            A   + +L     G   +T++   +L G+ +    +ER W    E+          PN 
Sbjct: 251 QARELLNSLPSR--GCKPNTVNYNTVLKGFCS----IER-WVDADEILDEMVRENCPPNE 303

Query: 268 RSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKA-TEQYNSVISVYCKNGFIDKASGL 326
            + + +  I    R   + +   L+LE  S     A    YN+VIS  C+ G +D A  L
Sbjct: 304 ATLNVI--INTLCRKGLLQKV-TLYLEKMSKHGCTANVVTYNAVISGMCEQGNVDSALEL 360

Query: 327 LKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLS 386
           L  M   GCKP+ +TY  +  G   ++  E+   A EL +K+    ++    P   T  +
Sbjct: 361 LSNMQSFGCKPDIVTYNTVLKGLCSADRWED---AEELMIKMSQNDRL----PDNSTFNT 413

Query: 387 IIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKA 429
           II  + +KG +  A  +F+++ +      +  Y+T+I    KA
Sbjct: 414 IISFWCQKGLILQAFEVFKQMPEKGCNPNSTTYSTIIGGLTKA 456



 Score = 55.1 bits (131), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 42/193 (21%), Positives = 77/193 (39%), Gaps = 9/193 (4%)

Query: 265 PNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKAS 324
           P   + +Y   ++ + R   +  A  +   M +  Q  +   +N +I   C+ G +  A 
Sbjct: 124 PEATAATYGALVDGYCRAGLLEDARRVVGGMPAHVQASSAYAHNPLIHALCERGRVADAL 183

Query: 325 GLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETT 384
            +L  M   GC P+ +TY  L     K      G++     ++LI   +     P   T 
Sbjct: 184 VVLDGMLCRGCAPDVVTYNILLQAACKG----RGYRQ---ALELIDFMRAEGCEPNNVTY 236

Query: 385 LSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAK--INDPNLLRRMIL 442
             II+    +GDV  A  L   L        T  YNT++K +   +  ++   +L  M+ 
Sbjct: 237 NVIIDAMCREGDVDQARELLNSLPSRGCKPNTVNYNTVLKGFCSIERWVDADEILDEMVR 296

Query: 443 GGARPDAETYSLL 455
               P+  T +++
Sbjct: 297 ENCPPNEATLNVI 309



 Score = 52.4 bits (124), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 54/260 (20%), Positives = 110/260 (42%), Gaps = 6/260 (2%)

Query: 94  NELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNIL 153
           NE   N ++     KG+++    Y++KM   G + + + +N +I      G   +   +L
Sbjct: 302 NEATLNVIINTLCRKGLLQKVTLYLEKMSKHGCTANVVTYNAVISGMCEQGNVDSALELL 361

Query: 154 RQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVA 213
             M++    P + T++ ++K   +    E   ++   M +++  P+  ++  + +     
Sbjct: 362 SNMQSFGCKPDIVTYNTVLKGLCSADRWEDAEELMIKMSQNDRLPDNSTFNTIISFWCQK 421

Query: 214 RLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNV---RSK 270
            L   A    + + +     N +T   +I   G L K   +E+    + E+ N      K
Sbjct: 422 GLILQAFEVFKQMPEKGCNPNSTTYSTII---GGLTKAGKMEQALELLNEMANKGFNTDK 478

Query: 271 SYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEM 330
            Y +  E+  +  ++    ++  ++Q       T  YN+V+   C+NG  D A  +L +M
Sbjct: 479 MYRVLTESLNKEDKIEEVVQVVHKLQDSGISPQTVLYNTVLLGLCRNGKTDYAIDVLADM 538

Query: 331 SMNGCKPNAITYRHLALGCF 350
              GC P+  TY  L  G F
Sbjct: 539 VSCGCMPDESTYIILIEGLF 558


>gi|449519270|ref|XP_004166658.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At4g19440, chloroplastic-like [Cucumis sativus]
          Length = 799

 Score = 76.6 bits (187), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 63/273 (23%), Positives = 124/273 (45%), Gaps = 5/273 (1%)

Query: 94  NELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNIL 153
           + + YN L++   ++G ++      ++M   G       +N L+    + G+      + 
Sbjct: 499 DRITYNALILGFCNEGKVEGCFRLREEMTKRGIQPDIYTYNFLLRGLCNVGKLDDAIKLW 558

Query: 154 RQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVA 213
            + KA  +  ++ T+ I+M+     + IE +  +++++   ++E N + Y I+  AH   
Sbjct: 559 DEFKASGLISNIHTYGIMMEGYCKANRIEDVENLFNELLSKKMELNSIVYNIIIKAHCQN 618

Query: 214 RLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQE---LPNVRSK 270
                A   +E ++      N +T   LI     +   +D + +   +++   +PNV   
Sbjct: 619 GNVAAALQLLENMKSKGILPNCATYSSLIHGVCNIGLVEDAKHLIDEMRKEGFVPNVVC- 677

Query: 271 SYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEM 330
            Y   I  + ++ Q+  AE  WLEM S         Y  +I  YCK G ++KA+ LL +M
Sbjct: 678 -YTALIGGYCKLGQMDTAESTWLEMISFNIHPNKFTYTVMIDGYCKLGNMEKANNLLIKM 736

Query: 331 SMNGCKPNAITYRHLALGCFKSNLVEEGFKALE 363
             +G  P+ +TY  L  G  K+N ++  FK  +
Sbjct: 737 KESGIVPDVVTYNVLTNGFCKANDMDNAFKVCD 769



 Score = 65.9 bits (159), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 60/228 (26%), Positives = 97/228 (42%), Gaps = 25/228 (10%)

Query: 242 IILYGYLAKG-------KDLERIWATVQE---LPNVRSKSYVLAIEAFGRIAQVSRAEEL 291
           I  Y +L +G        D  ++W   +    + N+ +  Y + +E + +  ++   E L
Sbjct: 535 IYTYNFLLRGLCNVGKLDDAIKLWDEFKASGLISNIHT--YGIMMEGYCKANRIEDVENL 592

Query: 292 WLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFK 351
           + E+ S K    +  YN +I  +C+NG +  A  LL+ M   G  PN  TY  L  G   
Sbjct: 593 FNELLSKKMELNSIVYNIIIKAHCQNGNVAAALQLLENMKSKGILPNCATYSSLIHGVCN 652

Query: 352 SNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKAN 411
             LVE+          LI   +     P +    ++I  + + G +  AE+ + E+   N
Sbjct: 653 IGLVEDA-------KHLIDEMRKEGFVPNVVCYTALIGGYCKLGQMDTAESTWLEMISFN 705

Query: 412 YTKYTFVYNTLIKAYVK----AKINDPNLLRRMILGGARPDAETYSLL 455
                F Y  +I  Y K     K N  NLL +M   G  PD  TY++L
Sbjct: 706 IHPNKFTYTVMIDGYCKLGNMEKAN--NLLIKMKESGIVPDVVTYNVL 751



 Score = 63.2 bits (152), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 96/406 (23%), Positives = 161/406 (39%), Gaps = 57/406 (14%)

Query: 94  NELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNIL 153
           N + YN ++      G +  + E  +KM V G   +   +  LI           + +IL
Sbjct: 254 NVVTYNCIINGLCQNGRLDNAFELKEKMTVKGVQPNLKTYGALINGLIKLNFFDKVNHIL 313

Query: 154 RQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVS-------YC-- 204
            +M      P+V  F+ L+       NIEG +K+   M    + P  V+       +C  
Sbjct: 314 DEMIGAGFNPNVVVFNNLIDGYCKMGNIEGALKIKDVMISKNITPTSVTLYSLMQGFCKS 373

Query: 205 ------------ILATAHAV--ARLYTVAETYVEALE--------KSMTGNNWSTLDVLI 242
                       IL++  ++     Y+V     +           K M   N+   D+L+
Sbjct: 374 DQIEHAENALEEILSSGLSIHPDNCYSVVHWLCKKFRYHSAFRFTKMMLSRNFRPSDLLL 433

Query: 243 --ILYGYLAKGKDLE--RIWATVQE----LPNVRSKSYVLAIEAFGRIAQVSRAEELWLE 294
             ++ G    GK LE   +W  + E       V S + +  +   G++ + SR  +  LE
Sbjct: 434 TMLVCGLCKDGKHLEATELWFRLLEKGSPASKVTSNALIHGLCGAGKLPEASRIVKEMLE 493

Query: 295 MQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNL 354
            + +   + T  YN++I  +C  G ++    L +EM+  G +P+  TY  L  G     L
Sbjct: 494 -RGLPMDRIT--YNALILGFCNEGKVEGCFRLREEMTKRGIQPDIYTYNFLLRG-----L 545

Query: 355 VEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTK 414
              G   L+  +KL    K       + T   ++E + +   + + ENLF EL       
Sbjct: 546 CNVG--KLDDAIKLWDEFKASGLISNIHTYGIMMEGYCKANRIEDVENLFNELLSKKMEL 603

Query: 415 YTFVYNTLIKAY-----VKAKINDPNLLRRMILGGARPDAETYSLL 455
            + VYN +IKA+     V A +    LL  M   G  P+  TYS L
Sbjct: 604 NSIVYNIIIKAHCQNGNVAAAL---QLLENMKSKGILPNCATYSSL 646



 Score = 55.1 bits (131), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 44/209 (21%), Positives = 91/209 (43%), Gaps = 9/209 (4%)

Query: 145 RRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYC 204
           R + + N+  ++ + K+  +   ++I++K    + N+   +++  +MK   + PN  +Y 
Sbjct: 585 RIEDVENLFNELLSKKMELNSIVYNIIIKAHCQNGNVAAALQLLENMKSKGILPNCATYS 644

Query: 205 ILATAHAVARLYTV--AETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQ 262
            L   H V  +  V  A+  ++ + K     N      LI  Y  L +    E  W  + 
Sbjct: 645 SLI--HGVCNIGLVEDAKHLIDEMRKEGFVPNVVCYTALIGGYCKLGQMDTAESTWLEMI 702

Query: 263 EL---PNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGF 319
                PN    +Y + I+ + ++  + +A  L ++M+    +     YN + + +CK   
Sbjct: 703 SFNIHPN--KFTYTVMIDGYCKLGNMEKANNLLIKMKESGIVPDVVTYNVLTNGFCKAND 760

Query: 320 IDKASGLLKEMSMNGCKPNAITYRHLALG 348
           +D A  +  +M+  G   + ITY  L  G
Sbjct: 761 MDNAFKVCDQMATEGLPVDEITYTTLVHG 789



 Score = 49.3 bits (116), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 40/165 (24%), Positives = 72/165 (43%), Gaps = 28/165 (16%)

Query: 271 SYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEM 330
           S+   I A  +  ++  A EL+++M+ +        YN +I+  C+NG +D A  L ++M
Sbjct: 222 SFTNVINALCKGGKMENAIELFMKMEKLGISPNVVTYNCIINGLCQNGRLDNAFELKEKM 281

Query: 331 SMNGCKPNAITYRHLALGCFKSNLVEE-----------GFKA-----------------L 362
           ++ G +PN  TY  L  G  K N  ++           GF                   +
Sbjct: 282 TVKGVQPNLKTYGALINGLIKLNFFDKVNHILDEMIGAGFNPNVVVFNNLIDGYCKMGNI 341

Query: 363 ELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEEL 407
           E  +K+      ++ TP   T  S+++ F +   + +AEN  EE+
Sbjct: 342 EGALKIKDVMISKNITPTSVTLYSLMQGFCKSDQIEHAENALEEI 386


>gi|297808589|ref|XP_002872178.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297318015|gb|EFH48437.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 568

 Score = 76.6 bits (187), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 95/424 (22%), Positives = 189/424 (44%), Gaps = 34/424 (8%)

Query: 53  IRERPYRPKELDYSYLLE-FTI-KNHG-----ISQGEKLFCCIPKDYQNELLYNNLVIAC 105
           + E  +RP  + Y+ LL   T+ K +G     +S+ E+          + + +N ++ A 
Sbjct: 65  LAETGHRPSLISYTTLLAAMTVQKQYGSLSSIVSEVEQ-----SGTKPDSIFFNAVINAF 119

Query: 106 LDKGVIKLSLEYMKKMRVLGHSISYLVFNRLII---LNSSPGRRKTIPNILRQMKADKVA 162
            + G ++ +++ + KM+ LG + +   +N LI    +   P R   + +++ +     V 
Sbjct: 120 SESGNMEDAVQALLKMKELGLNPTTSTYNTLIKGYGIAGKPERSSALLDLMLEESNVDVR 179

Query: 163 PHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETY 222
           P++ TF++L++       +E   +V   M+   V P+ V+Y  +AT +        AE+ 
Sbjct: 180 PNIRTFNVLVQAWCKKKKVEEAWEVVHKMEECGVRPDTVTYNTIATCYVQKGETVRAESE 239

Query: 223 V--EALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSKSYVLA----I 276
           V  + + K     N  T  +++  Y    + +D  R    V+ +  +R ++ ++     I
Sbjct: 240 VVEKMVMKEKAKPNGRTCGIVVGGYCREGRVRDGLRF---VRRMKEMRVEANLVVFNSLI 296

Query: 277 EAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCK 336
             F  +      +E+   M+          Y++V++ +   G+++KA+ + KEM   G K
Sbjct: 297 NGFVEVMDRDGIDEVLTLMKECNVKADVITYSTVMNAWSSAGYMEKAAQVFKEMVKAGVK 356

Query: 337 PNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGD 396
           P+A  Y  LA G  ++   +E  KA EL   LI       S P +    ++I  +   G 
Sbjct: 357 PDAHAYSILAKGYVRA---KEPKKAEELLETLIV-----ESRPNVVIFTTVISGWCSSGS 408

Query: 397 VGNAENLFEELKKANYTKYTFVYNTLIKAY--VKAKINDPNLLRRMILGGARPDAETYSL 454
           + +A  +F ++ K   +     + TL+  Y  VK       +L+ M   G +P+  T+ L
Sbjct: 409 MDDAMRVFNKMCKFGVSPNIKTFETLMWGYLEVKQPWKAEEVLQMMRGFGVKPENSTFLL 468

Query: 455 LKLA 458
           L  A
Sbjct: 469 LAEA 472


>gi|297743996|emb|CBI36966.3| unnamed protein product [Vitis vinifera]
          Length = 730

 Score = 76.6 bits (187), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 73/314 (23%), Positives = 142/314 (45%), Gaps = 24/314 (7%)

Query: 64  DYSYLLEFTIKNHGISQGEKLFCCIPKDYQNELLYNNLVIACLDKGV-------IKLSLE 116
           DY++LL   + N G S G K          N + YN ++ AC   GV       I   + 
Sbjct: 150 DYTFLLR-ELGNRGDS-GLK---------PNLVTYNAVIDACGKGGVDFNRAAEIFDEMN 198

Query: 117 YMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEA 176
              +M   G       +N L+      G+      I+ +M    + P+V T+  ++   A
Sbjct: 199 LFSEMLYRGIEQDIFTYNTLLDAVCKGGQMDLAFQIMSEMPRKHIMPNVVTYSTVIDGYA 258

Query: 177 NDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWS 236
               ++  + ++++MK + +  + VSY  L + +A    +  A    + +E S    +  
Sbjct: 259 KAGRLDEALNLFNEMKFASIGLDRVSYNTLLSIYAKLGRFEEALNVCKEMESSGIKKDAV 318

Query: 237 TLDVLIILYGYLAKGKDLERIWATVQE---LPNVRSKSYVLAIEAFGRIAQVSRAEELWL 293
           T + L+  YG   K ++++R++  ++     PN+ + S ++ + + G + Q   A E++ 
Sbjct: 319 TYNALLGGYGKQGKYEEVKRVFEEMKAERIFPNLLTYSTLIDVYSKGGLYQ--EAMEVFR 376

Query: 294 EMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSN 353
           E +          Y+++I   CKNG ++ A   L EM+  G +PN +TY  +     +S 
Sbjct: 377 EFKKAGLKADVVLYSALIDALCKNGLVESAVSFLDEMTKEGIRPNVVTYNSIIDAFGRSG 436

Query: 354 LVEEGFKALELGMK 367
           +VE+  ++ E+G K
Sbjct: 437 IVEDATES-EVGDK 449



 Score = 66.2 bits (160), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 55/192 (28%), Positives = 90/192 (46%), Gaps = 11/192 (5%)

Query: 264 LPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKA 323
           +PNV + S V  I+ + +  ++  A  L+ EM+          YN+++S+Y K G  ++A
Sbjct: 244 MPNVVTYSTV--IDGYAKAGRLDEALNLFNEMKFASIGLDRVSYNTLLSIYAKLGRFEEA 301

Query: 324 SGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLET 383
             + KEM  +G K +A+TY  L  G  K    EE  +  E         K     P L T
Sbjct: 302 LNVCKEMESSGIKKDAVTYNALLGGYGKQGKYEEVKRVFE-------EMKAERIFPNLLT 354

Query: 384 TLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKINDP--NLLRRMI 441
             ++I+++++ G    A  +F E KKA       +Y+ LI A  K  + +   + L  M 
Sbjct: 355 YSTLIDVYSKGGLYQEAMEVFREFKKAGLKADVVLYSALIDALCKNGLVESAVSFLDEMT 414

Query: 442 LGGARPDAETYS 453
             G RP+  TY+
Sbjct: 415 KEGIRPNVVTYN 426



 Score = 52.8 bits (125), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 81/409 (19%), Positives = 165/409 (40%), Gaps = 55/409 (13%)

Query: 44  RALEVMEW--VIRERPYRPKELD---YSYLLEFTIKNHGISQGEKLFCCIPKDY--QNEL 96
           RA E+ +   +  E  YR  E D   Y+ LL+   K   +    ++   +P+ +   N +
Sbjct: 189 RAAEIFDEMNLFSEMLYRGIEQDIFTYNTLLDAVCKGGQMDLAFQIMSEMPRKHIMPNVV 248

Query: 97  LYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQM 156
            Y+ ++      G +  +L    +M+     +  + +N L+ + +  GR +   N+ ++M
Sbjct: 249 TYSTVIDGYAKAGRLDEALNLFNEMKFASIGLDRVSYNTLLSIYAKLGRFEEALNVCKEM 308

Query: 157 KADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLY 216
           ++  +     T++ L+         E + +V+ +MK   + PN ++Y  L   ++   LY
Sbjct: 309 ESSGIKKDAVTYNALLGGYGKQGKYEEVKRVFEEMKAERIFPNLLTYSTLIDVYSKGGLY 368

Query: 217 TVAETYVEALEKSMTGNNWSTLDVLIILYGYL----AKGKDLERIWATVQEL------PN 266
             A       +K+        L   ++LY  L     K   +E   + + E+      PN
Sbjct: 369 QEAMEVFREFKKA-------GLKADVVLYSALIDALCKNGLVESAVSFLDEMTKEGIRPN 421

Query: 267 VRSKSYVLAIEAFGRIAQVSRAEE-------------LWLEMQSVKQLKATEQYNSVISV 313
           V   +Y   I+AFGR   V  A E             ++ ++ + K   A ++      +
Sbjct: 422 V--VTYNSIIDAFGRSGIVEDATESEVGDKEDNQIIKIFGQLAAEKTCHAKKENRGRQEI 479

Query: 314 YCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKK 373
            C      K    + E+ +   KPN +T+  +   C + N  E+    LE  ++L   + 
Sbjct: 480 LCILAVFHK----MHELDI---KPNVVTFSAILNACSRCNSFEDASMLLE-ELRLFDNQV 531

Query: 374 VRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTL 422
              +   L      + +         A++LF+E+K+ + +  +  YN L
Sbjct: 532 YGVAHGLLMGYGDNVWV--------QAQSLFDEVKQMDSSTASAFYNAL 572



 Score = 48.9 bits (115), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 48/194 (24%), Positives = 79/194 (40%), Gaps = 51/194 (26%)

Query: 271 SYVLAIEAFGRIA-QVSRAEELWLEMQSVKQL--KATEQ----YNSVISVYCKNGFIDKA 323
           +Y   I+A G+     +RA E++ EM    ++  +  EQ    YN+++   CK G +D A
Sbjct: 172 TYNAVIDACGKGGVDFNRAAEIFDEMNLFSEMLYRGIEQDIFTYNTLLDAVCKGGQMDLA 231

Query: 324 SGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLET 383
             ++ EM      PN +TY                                         
Sbjct: 232 FQIMSEMPRKHIMPNVVTYS---------------------------------------- 251

Query: 384 TLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVK-AKINDP-NLLRRMI 441
             ++I+ +A+ G +  A NLF E+K A+       YNTL+  Y K  +  +  N+ + M 
Sbjct: 252 --TVIDGYAKAGRLDEALNLFNEMKFASIGLDRVSYNTLLSIYAKLGRFEEALNVCKEME 309

Query: 442 LGGARPDAETYSLL 455
             G + DA TY+ L
Sbjct: 310 SSGIKKDAVTYNAL 323


>gi|410110061|gb|AFV61110.1| pentatricopeptide repeat-containing protein 123, partial
           [Acantholippia seriphioides]
          Length = 416

 Score = 76.6 bits (187), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 77/322 (23%), Positives = 149/322 (46%), Gaps = 22/322 (6%)

Query: 98  YNNLVIACLDKGVIKLSLEYMKKM---RVLGHSISYLVFNRLIILNSSPGRRKTIPNILR 154
           Y+ L+     +G+   +L +++KM   RV G  + Y   + LI L+          +I  
Sbjct: 14  YSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLY---SNLIELSRKLCDYSKAISIFS 70

Query: 155 QMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVAR 214
           ++K     P +  ++ ++ +            + S+MK S V PN  SY  L T +   +
Sbjct: 71  RLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMKXSGVMPNTASYSTLLTMYVENK 130

Query: 215 LYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQEL---PNVRSKS 271
            +  A +    + +     + +T +++I +YG L   K+ ++++  ++++   PNV S +
Sbjct: 131 KFLEALSVFSEMREVKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYN 190

Query: 272 YVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMS 331
            +L +  +G       A  L+  MQ     +    YNS+I +Y K    +KA+ L++EM 
Sbjct: 191 TLLRV--YGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMIMIYGKTLEHEKANNLIQEMQ 248

Query: 332 MNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTL--SIIE 389
             G +PN+ITY         S ++    K  +L    +  +K+RSS   ++  L  ++I 
Sbjct: 249 SRGIEPNSITY---------STIISIWGKVGKLDRAAMLFQKLRSSGVEIDQILFQTMIV 299

Query: 390 IFAEKGDVGNAENLFEELKKAN 411
            +   G V +A+ L  ELK+ +
Sbjct: 300 AYERAGLVAHAKRLLHELKRPD 321



 Score = 43.9 bits (102), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 53/244 (21%), Positives = 98/244 (40%), Gaps = 45/244 (18%)

Query: 190 DMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLA 249
           +M++  + P+  +Y  L T      L+  A ++++ +E+     +       ++LY  L 
Sbjct: 1   EMRQRALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGD-------LVLYSNLI 53

Query: 250 KGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNS 309
              +L R           +   Y  AI  F R+ +     +L               YN+
Sbjct: 54  ---ELSR-----------KLCDYSKAISIFSRLKRSGFTPDLV-------------AYNA 86

Query: 310 VISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLI 369
           +I+V+ K     +A  L+ EM  +G  PN  +Y  L        +  E  K LE    L 
Sbjct: 87  MINVFGKAKLFREARSLISEMKXSGVMPNTASYSTLL------TMYVENKKFLE---ALS 137

Query: 370 TTKKVRSSTPWLETTLS--IIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYV 427
              ++R     L+ T    +I+++ + G    A+ LF  ++K         YNTL++ Y 
Sbjct: 138 VFSEMREVKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYG 197

Query: 428 KAKI 431
            A++
Sbjct: 198 DAEL 201


>gi|356561679|ref|XP_003549107.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At1g12775, mitochondrial-like [Glycine max]
          Length = 750

 Score = 76.6 bits (187), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 80/372 (21%), Positives = 156/372 (41%), Gaps = 14/372 (3%)

Query: 92  YQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPN 151
           + N +  N L+     +G IK +L +  ++   G  ++ + +  LI      G  K +  
Sbjct: 130 HPNAITLNTLIKGLCFRGEIKKALYFHDQVVAQGFQLNQVSYRTLINGLCKTGETKAVAR 189

Query: 152 ILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHA 211
           +LR+++   V P V  ++ ++     +  +     +YS+M    + PN V+Y  L     
Sbjct: 190 LLRKLEGHSVKPDVVMYNTIIHSLCKNKLLGDACDLYSEMIVKGISPNVVTYNALVYGFC 249

Query: 212 VARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQEL---PNVR 268
           +      A + +  ++      +  T + LI   G   K K  + + A + +    P+V 
Sbjct: 250 IMGHLKEAFSLLNEMKLKNINPDVCTFNTLIDALGKEGKMKAAKIVLAVMMKACIKPDVV 309

Query: 269 SKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLK 328
             +Y   I+ +  + +V  A+ ++  M           Y ++I   CK   +D+A  L +
Sbjct: 310 --TYNSLIDGYFFLNKVKNAKYVFYSMAQSGVTPNVRTYTTMIDGLCKEKMVDEAMSLFE 367

Query: 329 EMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSII 388
           EM      P+ +TY  L  G  K++ +E   +A+ L  K+    K +   P + +   ++
Sbjct: 368 EMKYKNMIPDIVTYTSLIDGLCKNHHLE---RAIALCKKM----KEQGIQPDVYSYTILL 420

Query: 389 EIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKI--NDPNLLRRMILGGAR 446
           +   + G + NA+  F+ L    Y      YN +I    KA +     +L  +M   G  
Sbjct: 421 DALCKGGRLENAKEFFQRLLVKGYHLNVQTYNVMINGLCKADLFGEAMDLKSKMEGKGCM 480

Query: 447 PDAETYSLLKLA 458
           PDA T+  +  A
Sbjct: 481 PDAITFKTIICA 492



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 71/303 (23%), Positives = 122/303 (40%), Gaps = 22/303 (7%)

Query: 163 PHVSTFHI--LMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAE 220
           P   TFH   ++    N+ +   ++ ++   + +   P+  +  IL          T A 
Sbjct: 59  PPPPTFHFNYILSSLVNNKHYPTVISLFKKFESNGATPDLCTLNILMNCFCHLTHITFAF 118

Query: 221 TYVEALEKSMTGNNWSTLDVLI---ILYGYLAKGKDL-ERIWATVQELPNVRSKSYVLAI 276
           + +  + K     N  TL+ LI      G + K     +++ A   +L  V  ++ +  +
Sbjct: 119 SVLANILKRGYHPNAITLNTLIKGLCFRGEIKKALYFHDQVVAQGFQLNQVSYRTLINGL 178

Query: 277 EAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCK 336
              G    V+R     LE  SVK       YN++I   CKN  +  A  L  EM + G  
Sbjct: 179 CKTGETKAVARLLR-KLEGHSVKP--DVVMYNTIIHSLCKNKLLGDACDLYSEMIVKGIS 235

Query: 337 PNAITYRHLALG-CFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKG 395
           PN +TY  L  G C   +L E           L+   K+++  P + T  ++I+   ++G
Sbjct: 236 PNVVTYNALVYGFCIMGHLKE--------AFSLLNEMKLKNINPDVCTFNTLIDALGKEG 287

Query: 396 DVGNAENLFEELKKANYTKYTFVYNTLIKAYV---KAKINDPNLLRRMILGGARPDAETY 452
            +  A+ +   + KA        YN+LI  Y    K K N   +   M   G  P+  TY
Sbjct: 288 KMKAAKIVLAVMMKACIKPDVVTYNSLIDGYFFLNKVK-NAKYVFYSMAQSGVTPNVRTY 346

Query: 453 SLL 455
           + +
Sbjct: 347 TTM 349



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 52/226 (23%), Positives = 86/226 (38%), Gaps = 56/226 (24%)

Query: 242 IILYGYLAKG-------KDLERIWATVQEL---PNVRSKSYVLAIEAFGRIAQVSRAEEL 291
           ++ YG L  G       K  + ++ ++ ++   PNV+   Y + I+   +   V  A  L
Sbjct: 541 VVTYGTLMDGYFLVNELKHAKYVFYSMAQMGVTPNVQC--YTIMIDGLCKKKTVDEAMSL 598

Query: 292 WLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFK 351
           + EM+          Y S+I   CKN  +++A  LLKEM  +G +P+  +Y  L  G  K
Sbjct: 599 FEEMKHKNMFPNIVTYTSLIDALCKNHHLERAIALLKEMKEHGIQPDVYSYTILLDGLCK 658

Query: 352 SNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKAN 411
           S                                          G +  A+ +F+ L    
Sbjct: 659 S------------------------------------------GRLEGAKEIFQRLLVKG 676

Query: 412 YTKYTFVYNTLIKAYVKAKINDP--NLLRRMILGGARPDAETYSLL 455
           Y     VY  +I    KA + D   +L  +M   G  PDA T+ ++
Sbjct: 677 YHLNVQVYTAMINELCKAGLFDEALDLQXKMEDKGCMPDAVTFDII 722



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 49/204 (24%), Positives = 85/204 (41%), Gaps = 11/204 (5%)

Query: 145 RRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYC 204
           R K    +L  M    + P V T+  LM      + ++    V+  M +  V PN   Y 
Sbjct: 521 RLKEAKIVLAVMTKACIKPDVVTYGTLMDGYFLVNELKHAKYVFYSMAQMGVTPNVQCYT 580

Query: 205 ILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQEL 264
           I+       +    A +  E ++      N  T   LI     L K   LER  A ++E+
Sbjct: 581 IMIDGLCKKKTVDEAMSLFEEMKHKNMFPNIVTYTSLI---DALCKNHHLERAIALLKEM 637

Query: 265 ------PNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNG 318
                 P+V S  Y + ++   +  ++  A+E++  +         + Y ++I+  CK G
Sbjct: 638 KEHGIQPDVYS--YTILLDGLCKSGRLEGAKEIFQRLLVKGYHLNVQVYTAMINELCKAG 695

Query: 319 FIDKASGLLKEMSMNGCKPNAITY 342
             D+A  L  +M   GC P+A+T+
Sbjct: 696 LFDEALDLQXKMEDKGCMPDAVTF 719


>gi|224092436|ref|XP_002309609.1| predicted protein [Populus trichocarpa]
 gi|222855585|gb|EEE93132.1| predicted protein [Populus trichocarpa]
          Length = 841

 Score = 76.6 bits (187), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 96/449 (21%), Positives = 180/449 (40%), Gaps = 60/449 (13%)

Query: 53  IRERPYRPKELDYSYLLEFTIKNHGI-----SQGEKLFCCIPKDYQNELLYNNLVIACLD 107
           +R++ + P E+ ++ ++   +K   +      +GE L C  P    N ++   L+     
Sbjct: 285 MRDKGWVPHEVIFTRVIGVCMKQGKMLEAVKVKGEMLSCGKP---MNVVVATTLMKGYCK 341

Query: 108 KGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVST 167
           +G +  +LE   KM   G   + + +  +I      G       I  QMK   ++P V  
Sbjct: 342 QGDLDSALELFDKMNENGICPNNVTYAVIIEWCCKNGNMDKAYEIYNQMKNKDISPTVFN 401

Query: 168 FHILMK------------------IEANDHNI------------EGLMK----VYSDMKR 193
            + L++                  +     N+            EG M     ++  M R
Sbjct: 402 VNSLIRGYLKARSPEEASKLFDEAVACGIANVFTYNSLLSWLCKEGKMSEACSIWEKMVR 461

Query: 194 SEVEPNEVSYCILATAHAV-ARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGK 252
             V P+ VSY  +   H     + +    +VE LEK +  N    +   +++ GY  KG 
Sbjct: 462 KGVRPSVVSYNNMILGHCQQGDMDSANGVFVEMLEKGLKPN---LITYSVLMDGYFKKG- 517

Query: 253 DLERIWATVQEL--PNVRSKSYV--LAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYN 308
           D E  +     +   N+    +   + I    +  + S +++   ++     +     YN
Sbjct: 518 DTEYAFGLYDRMRGENIAPSDFTCNIIINGLCKAGRTSESQDRLKKLVQEGFIPTCMTYN 577

Query: 309 SVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKL 368
            +I  + K G ++ A  +  EM   G  PN  TY +L  G  KSN        ++L +K+
Sbjct: 578 CIIDGFVKEGSVNSALAVYTEMCKIGVSPNVFTYTNLINGFCKSN-------NMDLALKV 630

Query: 369 ITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVK 428
           +   K +     +    ++I+ F  KGD+ NA  L  EL++   +    VY+++I  + K
Sbjct: 631 MDEMKNKGIELDVTVYCALIDGFCRKGDMVNASQLLSELQEVGLSPNKVVYSSMISGFRK 690

Query: 429 AKINDP--NLLRRMILGGARPDAETYSLL 455
            +  +   +L +RMI  G   D + Y+ L
Sbjct: 691 LQNMEAALHLHKRMINEGIPCDLQIYTTL 719



 Score = 66.6 bits (161), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 103/514 (20%), Positives = 196/514 (38%), Gaps = 68/514 (13%)

Query: 2   ERLPRGEPVGSAFQSWMREGFPVHRG------EIFHSINRLRKLQLNKRALEVMEWV--- 52
           E L  G+P+     + + +G+   +G      E+F  +N       N     ++EW    
Sbjct: 319 EMLSCGKPMNVVVATTLMKGY-CKQGDLDSALELFDKMNENGICPNNVTYAVIIEWCCKN 377

Query: 53  ------------IRERPYRPKELDYSYLLEFTIKNHGISQGEKLFC-CIPKDYQNELLYN 99
                       ++ +   P   + + L+   +K     +  KLF   +     N   YN
Sbjct: 378 GNMDKAYEIYNQMKNKDISPTVFNVNSLIRGYLKARSPEEASKLFDEAVACGIANVFTYN 437

Query: 100 NLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKAD 159
           +L+     +G +  +    +KM   G   S + +N +I+ +   G   +   +  +M   
Sbjct: 438 SLLSWLCKEGKMSEACSIWEKMVRKGVRPSVVSYNNMILGHCQQGDMDSANGVFVEMLEK 497

Query: 160 KVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVA 219
            + P++ T+ +LM       + E    +Y  M+   + P++ +  I+      A   + +
Sbjct: 498 GLKPNLITYSVLMDGYFKKGDTEYAFGLYDRMRGENIAPSDFTCNIIINGLCKAGRTSES 557

Query: 220 ETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQEL------PNVRSKSYV 273
           +  ++ L +   G   + +    I+ G++ +G  +    A   E+      PNV +  Y 
Sbjct: 558 QDRLKKLVQE--GFIPTCMTYNCIIDGFVKEGS-VNSALAVYTEMCKIGVSPNVFT--YT 612

Query: 274 LAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMN 333
             I  F +   +  A ++  EM++         Y ++I  +C+ G +  AS LL E+   
Sbjct: 613 NLINGFCKSNNMDLALKVMDEMKNKGIELDVTVYCALIDGFCRKGDMVNASQLLSELQEV 672

Query: 334 GCKPNAITYRHLALGCFK------------------------------SNLVEEGFKALE 363
           G  PN + Y  +  G  K                              S L++EG   L 
Sbjct: 673 GLSPNKVVYSSMISGFRKLQNMEAALHLHKRMINEGIPCDLQIYTTLISGLLKEG--KLL 730

Query: 364 LGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLI 423
              +L      +   P L T   +I     KG + NA+ + E++ +   T   F+YNTLI
Sbjct: 731 FASELYAEMLAKGIMPDLITYSVLIHGLCNKGQLENAQKILEDMDRKCMTPTVFIYNTLI 790

Query: 424 KAYVK-AKINDP-NLLRRMILGGARPDAETYSLL 455
             + K   + +   L   M+  G  PD  TY +L
Sbjct: 791 TGHFKEGNLQEAFRLHNEMLDKGLVPDDTTYDIL 824



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 77/350 (22%), Positives = 145/350 (41%), Gaps = 21/350 (6%)

Query: 114 SLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMK 173
           +L  +++MR  G     ++F R+I +    G+      +  +M +     +V     LMK
Sbjct: 278 ALGLLREMRDKGWVPHEVIFTRVIGVCMKQGKMLEAVKVKGEMLSCGKPMNVVVATTLMK 337

Query: 174 IEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILAT-AHAVARLYTVAETYVEALEKSMTG 232
                 +++  ++++  M  + + PN V+Y ++         +    E Y +   K ++ 
Sbjct: 338 GYCKQGDLDSALELFDKMNENGICPNNVTYAVIIEWCCKNGNMDKAYEIYNQMKNKDISP 397

Query: 233 NNWSTLDVLIILYGYLAKGKDLERIWATVQE-----LPNVRSKSYVLAIEAFGRIAQVSR 287
              +  +V  ++ GYL K +  E       E     + NV + + +L+     +  ++S 
Sbjct: 398 ---TVFNVNSLIRGYL-KARSPEEASKLFDEAVACGIANVFTYNSLLS--WLCKEGKMSE 451

Query: 288 AEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLAL 347
           A  +W +M       +   YN++I  +C+ G +D A+G+  EM   G KPN ITY  L  
Sbjct: 452 ACSIWEKMVRKGVRPSVVSYNNMILGHCQQGDMDSANGVFVEMLEKGLKPNLITYSVLMD 511

Query: 348 GCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEEL 407
           G FK    E  F        L    +  +  P   T   II    + G    +++  ++L
Sbjct: 512 GYFKKGDTEYAF-------GLYDRMRGENIAPSDFTCNIIINGLCKAGRTSESQDRLKKL 564

Query: 408 KKANYTKYTFVYNTLIKAYVK-AKINDP-NLLRRMILGGARPDAETYSLL 455
            +  +      YN +I  +VK   +N    +   M   G  P+  TY+ L
Sbjct: 565 VQEGFIPTCMTYNCIIDGFVKEGSVNSALAVYTEMCKIGVSPNVFTYTNL 614


>gi|255571081|ref|XP_002526491.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223534166|gb|EEF35882.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 884

 Score = 76.6 bits (187), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 94/430 (21%), Positives = 177/430 (41%), Gaps = 19/430 (4%)

Query: 33  INRLRKLQLNKRALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQGEKLFCCIPKD- 91
           IN  R       AL  +  +I+    +P  + +S ++        + +  K+F  I +  
Sbjct: 320 INAYRIRGRTSDALGFLHLMIKNGC-KPSLITFSTIITAFCNEGNVVEARKIFEGIQEVG 378

Query: 92  -YQNELLYNNLVIACLD-KGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTI 149
              N  +YN L+      + V + ++ Y ++MR  G +     FN L+  N   G+    
Sbjct: 379 LSPNVAMYNTLMSGYFKARDVCQANMLY-EEMRDKGIAPDGATFNILVAGNYKYGKEADS 437

Query: 150 PNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATA 209
             + R      + P  S + + +        ++  M+   DM    + P+ V++  +  A
Sbjct: 438 YELFRDWSLSSLVPDCSLYDVSVAGLCWAGQLDEAMQFLEDMLEKGMPPSVVAFNSVIAA 497

Query: 210 HAVARLYTVA-ETYVEALEKSMTGNNWSTLDVLIILY--GYLAKGKDLERIWATVQELPN 266
           ++ A     A + Y   L   +  ++ +   +L+ L   G L + +DL  ++  + +   
Sbjct: 498 YSRAGFEDNAHKAYKIMLMFGLVPSSSTCSSMLLGLSKKGRLQEARDL--LYKMIDKGLP 555

Query: 267 VRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGL 326
           V   ++ + ++ + ++   + A  LW EM++         +++ I    K G +++A   
Sbjct: 556 VNKVAFTVLLDGYFKVGDTAGAHSLWYEMEARGICPDAIAFSAFIDGLSKAGLVEEAYEA 615

Query: 327 LKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLS 386
             EMS  G  PN   Y  L  G      + E  K LE  M+       +   P + TT  
Sbjct: 616 FSEMSKKGFVPNNFVYNSLIHGLCNCGKLHEALK-LEREMR------QKGLLPDIFTTNI 668

Query: 387 IIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKA--KINDPNLLRRMILGG 444
           II  F ++G + +A + F E+     T  T  YNTLI  Y K    ++    L +M   G
Sbjct: 669 IINGFCKEGRMKSAFDAFAEMHHIGVTPDTVTYNTLIGGYCKVLDMVSADEFLNKMYASG 728

Query: 445 ARPDAETYSL 454
             PD  TY++
Sbjct: 729 WDPDITTYNI 738



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 102/464 (21%), Positives = 177/464 (38%), Gaps = 40/464 (8%)

Query: 30  FHSINRLRKLQLNKR-ALEVMEWV--IRERPYRPKELDYSYLLEFTIKNHGISQGEKLFC 86
           F  +N L +  +N   A E +E +  +RE   RP     S L    ++        KL  
Sbjct: 208 FSILNTLMRGFMNSEMAYESLEILSRMREVGVRPSSSAISILFRLLLRVGDYGSVWKLLR 267

Query: 87  CIPKDYQNELLYN-NLVIACL-DKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPG 144
            + +D      +N N++I C   KG ++++   +  M           +N LI      G
Sbjct: 268 GMIRDGPRPCNHNFNIMILCFCQKGYLRVAESLLFVMPKFCCEPDVYAYNILINAYRIRG 327

Query: 145 RRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYC 204
           R       L  M  +   P + TF  ++    N+ N+    K++  ++   + PN   Y 
Sbjct: 328 RTSDALGFLHLMIKNGCKPSLITFSTIITAFCNEGNVVEARKIFEGIQEVGLSPNVAMYN 387

Query: 205 ILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLII---LYGYLAKGKDLERIWATV 261
            L + +  AR    A    E +       + +T ++L+     YG  A   +L R W+  
Sbjct: 388 TLMSGYFKARDVCQANMLYEEMRDKGIAPDGATFNILVAGNYKYGKEADSYELFRDWSLS 447

Query: 262 QELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFID 321
             +P+     Y +++       Q+  A +   +M       +   +NSVI+ Y + GF D
Sbjct: 448 SLVPDC--SLYDVSVAGLCWAGQLDEAMQFLEDMLEKGMPPSVVAFNSVIAAYSRAGFED 505

Query: 322 KASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEG----FKALELGM----------- 366
            A    K M M G  P++ T   + LG  K   ++E     +K ++ G+           
Sbjct: 506 NAHKAYKIMLMFGLVPSSSTCSSMLLGLSKKGRLQEARDLLYKMIDKGLPVNKVAFTVLL 565

Query: 367 -------------KLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYT 413
                         L    + R   P      + I+  ++ G V  A   F E+ K  + 
Sbjct: 566 DGYFKVGDTAGAHSLWYEMEARGICPDAIAFSAFIDGLSKAGLVEEAYEAFSEMSKKGFV 625

Query: 414 KYTFVYNTLIKAYVK-AKINDP-NLLRRMILGGARPDAETYSLL 455
              FVYN+LI       K+++   L R M   G  PD  T +++
Sbjct: 626 PNNFVYNSLIHGLCNCGKLHEALKLEREMRQKGLLPDIFTTNII 669



 Score = 41.2 bits (95), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 62/329 (18%), Positives = 142/329 (43%), Gaps = 20/329 (6%)

Query: 99  NNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKA 158
           +++++    KG ++ + + + KM   G  ++ + F  L+      G      ++  +M+A
Sbjct: 527 SSMLLGLSKKGRLQEARDLLYKMIDKGLPVNKVAFTVLLDGYFKVGDTAGAHSLWYEMEA 586

Query: 159 DKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSY-CILATAHAVARLYT 217
             + P    F   +   +    +E   + +S+M +    PN   Y  ++       +L+ 
Sbjct: 587 RGICPDAIAFSAFIDGLSKAGLVEEAYEAFSEMSKKGFVPNNFVYNSLIHGLCNCGKLHE 646

Query: 218 VAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNV----RSKSYV 273
             +   E  +K +  + ++T    II+ G+  +G+ ++  +    E+ ++     + +Y 
Sbjct: 647 ALKLEREMRQKGLLPDIFTTN---IIINGFCKEGR-MKSAFDAFAEMHHIGVTPDTVTYN 702

Query: 274 LAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMN 333
             I  + ++  +  A+E   +M +         YN  I  +C +  I +A  +L E+   
Sbjct: 703 TLIGGYCKVLDMVSADEFLNKMYASGWDPDITTYNIRIQGFCSSQKISRAVTMLDELIAV 762

Query: 334 GCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAE 393
           G  PN +TY  + +    +++++   +A+ L  KL+    V    P + TT  ++  F +
Sbjct: 763 GVVPNTVTYNTM-MNAVCTDMLD---RAMVLTAKLLKMAFV----PNVVTTNVLLSHFCK 814

Query: 394 KGDVGNAENLFEELKK---ANYTKYTFVY 419
           +G    A    ++L K   A++  Y  VY
Sbjct: 815 QGMPEKALIWGQKLNKLLRADFIGYWLVY 843


>gi|6633829|gb|AAF19688.1|AC009519_22 F1N19.15 [Arabidopsis thaliana]
          Length = 1048

 Score = 76.6 bits (187), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 84/373 (22%), Positives = 143/373 (38%), Gaps = 31/373 (8%)

Query: 117 YMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEA 176
           + +KM + G S     F  LI       R     ++L +M      P + TF  L+    
Sbjct: 93  FSQKMELYGISHDLYSFTILIHCFCRCSRLSFALSVLGKMMKLGYEPSIVTFGSLLHGFC 152

Query: 177 NDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWS 236
             + I     +   M +S  EPN V Y  L           +A   +  +EK   G +  
Sbjct: 153 LVNRIGDAFSLVILMVKSGYEPNVVVYNTLIDGLCKNGELNIALELLNEMEKKGLGADVV 212

Query: 237 TLDVLIILYGYLAKGKDLERIWATVQELP-NVRSKSYVLAIEAFGRIAQVSRAEELWLEM 295
           T + L+    Y  +  D  R+   + +   N    ++   I+ F +   +  A+EL+ EM
Sbjct: 213 TYNTLLTGLCYSGRWSDAARMLRDMMKRSINPDVVTFTALIDVFVKQGNLDEAQELYKEM 272

Query: 296 QSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLV 355
                      YNS+I+  C +G +  A      M+  GC PN +TY  L  G  K  +V
Sbjct: 273 IQSSVDPNNVTYNSIINGLCMHGRLYDAKKTFDLMASKGCFPNVVTYNTLISGFCKFRMV 332

Query: 356 EEGFK----------------------------ALELGMKLITTKKVRSSTPWLETTLSI 387
           +EG K                             L + + +      R  TP + T   +
Sbjct: 333 DEGMKLFQRMSCEGFNADIFTYNTLIHGYCQVGKLRVALDIFCWMVSRRVTPDIITHCIL 392

Query: 388 IEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKA-KINDP-NLLRRMILGGA 445
           +      G++ +A   F++++++        YN +I    KA K+     L  R+ + G 
Sbjct: 393 LHGLCVNGEIESALVKFDDMRESEKYIGIVAYNIMIHGLCKADKVEKAWELFCRLPVEGV 452

Query: 446 RPDAETYSLLKLA 458
           +PDA TY+++ L 
Sbjct: 453 KPDARTYTIMILG 465



 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 77/364 (21%), Positives = 142/364 (39%), Gaps = 46/364 (12%)

Query: 29  IFHSINRLRKLQLNKRALEVMEWVIRERPYRPKELDYSYLLE-FTIKNHGISQGEKLFCC 87
           + H   R  +L     AL V+  +++   Y P  + +  LL  F + N        +   
Sbjct: 112 LIHCFCRCSRLSF---ALSVLGKMMK-LGYEPSIVTFGSLLHGFCLVNRIGDAFSLVILM 167

Query: 88  IPKDYQ-NELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRR 146
           +   Y+ N ++YN L+      G + ++LE + +M   G     + +N L+      GR 
Sbjct: 168 VKSGYEPNVVVYNTLIDGLCKNGELNIALELLNEMEKKGLGADVVTYNTLLTGLCYSGRW 227

Query: 147 KTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSY-CI 205
                +LR M    + P V TF  L+ +     N++   ++Y +M +S V+PN V+Y  I
Sbjct: 228 SDAARMLRDMMKRSINPDVVTFTALIDVFVKQGNLDEAQELYKEMIQSSVDPNNVTYNSI 287

Query: 206 LATAHAVARLYTVAETYVEALEK--------------------------------SMTGN 233
           +       RLY   +T+     K                                S  G 
Sbjct: 288 INGLCMHGRLYDAKKTFDLMASKGCFPNVVTYNTLISGFCKFRMVDEGMKLFQRMSCEGF 347

Query: 234 NWSTLDVLIILYGYLAKGK-----DLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRA 288
           N        +++GY   GK     D+     + +  P++   ++ + +       ++  A
Sbjct: 348 NADIFTYNTLIHGYCQVGKLRVALDIFCWMVSRRVTPDI--ITHCILLHGLCVNGEIESA 405

Query: 289 EELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALG 348
              + +M+  ++      YN +I   CK   ++KA  L   + + G KP+A TY  + LG
Sbjct: 406 LVKFDDMRESEKYIGIVAYNIMIHGLCKADKVEKAWELFCRLPVEGVKPDARTYTIMILG 465

Query: 349 CFKS 352
             K+
Sbjct: 466 LCKN 469



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 64/284 (22%), Positives = 123/284 (43%), Gaps = 16/284 (5%)

Query: 179 HNI--EGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWS 236
           H+I  E    ++ +M  S+  P+ V +  L TA A  R Y     + + +E     ++  
Sbjct: 48  HSIRFEDAFALFFEMVHSQPLPSIVDFTRLLTATANLRRYETVIYFSQKMELYGISHDLY 107

Query: 237 TLDVLIILYGYLAKGKDLERIWATVQEL---PNVRSKSYVLAIEAFGRIAQVSRAEELWL 293
           +  +LI  +   ++      +   + +L   P++ +   +L    F  + ++  A  L +
Sbjct: 108 SFTILIHCFCRCSRLSFALSVLGKMMKLGYEPSIVTFGSLL--HGFCLVNRIGDAFSLVI 165

Query: 294 EMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSN 353
            M           YN++I   CKNG ++ A  LL EM   G   + +TY  L  G   S 
Sbjct: 166 LMVKSGYEPNVVVYNTLIDGLCKNGELNIALELLNEMEKKGLGADVVTYNTLLTGLCYSG 225

Query: 354 LVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYT 413
              +  + L   MK       RS  P + T  ++I++F ++G++  A+ L++E+ +++  
Sbjct: 226 RWSDAARMLRDMMK-------RSINPDVVTFTALIDVFVKQGNLDEAQELYKEMIQSSVD 278

Query: 414 KYTFVYNTLIKAY-VKAKINDP-NLLRRMILGGARPDAETYSLL 455
                YN++I    +  ++ D       M   G  P+  TY+ L
Sbjct: 279 PNNVTYNSIINGLCMHGRLYDAKKTFDLMASKGCFPNVVTYNTL 322



 Score = 58.9 bits (141), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 77/338 (22%), Positives = 128/338 (37%), Gaps = 78/338 (23%)

Query: 120 KMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDH 179
           KM  LG   S +    L+       R +   +++  M      P+V  ++ ++     + 
Sbjct: 664 KMMKLGFRPSIVTLGSLLNGFCQGNRFQEAVSLVDSMDGFGFVPNVVIYNTVINGLCKNR 723

Query: 180 NIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLD 239
           ++   ++V+  M++  +  + V+Y                 T +  L  S     W+  D
Sbjct: 724 DLNNALEVFYCMEKKGIRADAVTY----------------NTLISGLSNS---GRWT--D 762

Query: 240 VLIILYGYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVK 299
              +L   + +  D           PNV    +   I+ F +   +  A  L+ EM    
Sbjct: 763 AARLLRDMVKRKID-----------PNV--IFFTALIDTFVKEGNLLEARNLYKEMIRRS 809

Query: 300 QLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGF 359
            +     YNS+I+ +C +G +  A  +   M   GC P+ +TY  L  G  KS  VE+  
Sbjct: 810 VVPNVFTYNSLINGFCIHGCLGDAKYMFDLMVSKGCFPDVVTYNTLITGFCKSKRVED-- 867

Query: 360 KALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVY 419
                GMKL           + E T         +G VG+A                F Y
Sbjct: 868 -----GMKL-----------FCEMTY--------QGLVGDA----------------FTY 887

Query: 420 NTLIKAYVKA-KIN-DPNLLRRMILGGARPDAETYSLL 455
           NTLI  Y +A K+N    +  RM+  G  PD  TY++L
Sbjct: 888 NTLIHGYCQAGKLNVAQKVFNRMVDCGVSPDIVTYNIL 925



 Score = 58.5 bits (140), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 77/369 (20%), Positives = 130/369 (35%), Gaps = 57/369 (15%)

Query: 94   NELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNIL 153
            N ++YN ++        +  +LE    M   G     + +N LI   S+ GR      +L
Sbjct: 708  NVVIYNTVINGLCKNRDLNNALEVFYCMEKKGIRADAVTYNTLISGLSNSGRWTDAARLL 767

Query: 154  RQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVA 213
            R M   K+ P+V  F  L+     + N+     +Y +M R  V PN  +Y  L     + 
Sbjct: 768  RDMVKRKIDPNVIFFTALIDTFVKEGNLLEARNLYKEMIRRSVVPNVFTYNSLINGFCI- 826

Query: 214  RLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSKSYV 273
                                           +G L   K +  +  +    P+V   +Y 
Sbjct: 827  -------------------------------HGCLGDAKYMFDLMVSKGCFPDV--VTYN 853

Query: 274  LAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMN 333
              I  F +  +V    +L+ EM     +     YN++I  YC+ G ++ A  +   M   
Sbjct: 854  TLITGFCKSKRVEDGMKLFCEMTYQGLVGDAFTYNTLIHGYCQAGKLNVAQKVFNRMVDC 913

Query: 334  GCKPNAITYRHLALGCFKSN-------LVEEGFKALELGMKLITTKKVRSSTPWLETTLS 386
            G  P+ +TY ++ L C  +N       ++ E  +  E+ + +IT                
Sbjct: 914  GVSPDIVTY-NILLDCLCNNGKIEKALVMVEDLQKSEMDVDIITYN-------------I 959

Query: 387  IIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKIN--DPNLLRRMILGG 444
            II+       +  A  LF  L +         Y T+I    +  +      L RRM   G
Sbjct: 960  IIQGLCRTDKLKEAWCLFRSLTRKGVKPDAIAYITMISGLCRKGLQREADKLCRRMKEDG 1019

Query: 445  ARPDAETYS 453
              P    Y 
Sbjct: 1020 FMPSERIYD 1028



 Score = 47.8 bits (112), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 71/311 (22%), Positives = 126/311 (40%), Gaps = 24/311 (7%)

Query: 155 QMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVAR 214
           +M   +  P +  F  ++ + A  +  + ++ +Y  M+   +  +  S+ IL   H   R
Sbjct: 594 EMLQSRPIPSIVDFTRVLTVIAKMNKFDIVIYLYHKMENLGISHDLYSFTILI--HCFCR 651

Query: 215 LYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQEL------PNVR 268
              ++       +    G   S + +  +L G+  +G   +   + V  +      PNV 
Sbjct: 652 CSRLSLALALLGKMMKLGFRPSIVTLGSLLNGF-CQGNRFQEAVSLVDSMDGFGFVPNV- 709

Query: 269 SKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLK 328
              Y   I    +   ++ A E++  M+          YN++IS    +G    A+ LL+
Sbjct: 710 -VIYNTVINGLCKNRDLNNALEVFYCMEKKGIRADAVTYNTLISGLSNSGRWTDAARLLR 768

Query: 329 EMSMNGCKPNAITYRHLALGCFKSNLVEEG--FKALELGMKLITTKKVRSSTPWLETTLS 386
           +M      PN I +  L         V+EG   +A  L  ++I     RS  P + T  S
Sbjct: 769 DMVKRKIDPNVIFFTALI-----DTFVKEGNLLEARNLYKEMIR----RSVVPNVFTYNS 819

Query: 387 IIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAK-INDP-NLLRRMILGG 444
           +I  F   G +G+A+ +F+ +           YNTLI  + K+K + D   L   M   G
Sbjct: 820 LINGFCIHGCLGDAKYMFDLMVSKGCFPDVVTYNTLITGFCKSKRVEDGMKLFCEMTYQG 879

Query: 445 ARPDAETYSLL 455
              DA TY+ L
Sbjct: 880 LVGDAFTYNTL 890


>gi|357146655|ref|XP_003574066.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g13630-like [Brachypodium distachyon]
          Length = 795

 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 100/455 (21%), Positives = 188/455 (41%), Gaps = 37/455 (8%)

Query: 20  EGFPVHRGEIFHSI--NRLRKLQLNKRALEVMEWVIRERPYRPKELDYSYLLEFTIKNHG 77
           E + + + E  HSI  + L K      AL  ++   +   ++P  + ++ L+   + N G
Sbjct: 194 EAYGISKSEYSHSIIIDGLCKQDKVGEALSFLQEARKGERFKPLGMSFNVLMS-ALCNWG 252

Query: 78  ISQGEKLFCCIPKDY---QNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFN 134
             Q  K F C+   Y    +   Y+ L+      G +  +++  +++   G  +  + +N
Sbjct: 253 FIQPAKSFLCLMLKYGLNPDRYTYSTLIHGLCKIGFLDEAVDLFERVTEEGMKLETVTYN 312

Query: 135 RLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRS 194
            LI      G  + +P I++ M+   + P + T+ IL+       ++E  MK+ +D+   
Sbjct: 313 SLINGYRLLGLTREVPKIIQFMRYQGIEPDIVTYTILIAGHCESGDVEEGMKIRNDILDQ 372

Query: 195 EVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDL 254
            ++ N V+Y +L  A     L   AE  +  +     G +   +   I+++GY   G ++
Sbjct: 373 GLQLNIVTYSVLLNALFKKGLVHEAENLLGEIHS--IGLDMDIIAYSILIHGYCKLG-EI 429

Query: 255 ER-------IWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELW-LEMQSVK-QLKATE 305
           ER       +  + + +P   +   +L     G   +    E  W LE  +VK Q     
Sbjct: 430 ERALEVCDVMCCSQKVVPTSLNHLSILV----GLCKKGLLVEARWYLENVAVKYQPGDVV 485

Query: 306 QYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALG---CFKSNLVEEGFKAL 362
            YN VI  Y K G I  A GL  ++ + G  P  +T   +  G   C      E  F+A+
Sbjct: 486 LYNVVIDGYAKIGDISNAVGLYDQIVIAGMFPTIVTCNSILYGYCKCGDLQAAESYFRAI 545

Query: 363 ELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTL 422
           +          + S  P + T  ++++  +E G V    ++  E+ +         Y+ +
Sbjct: 546 Q----------ISSLLPTMVTYTTLMDALSEAGKVNTMLSILYEMVEKGIKPNAITYSVV 595

Query: 423 IKAYVKA-KINDP-NLLRRMILGGARPDAETYSLL 455
           IK   K  + +D  + L  M   G   D  TY+ L
Sbjct: 596 IKGLCKELRFHDAIHFLDNMHGEGVNADPVTYNTL 630


>gi|413922209|gb|AFW62141.1| hypothetical protein ZEAMMB73_911481 [Zea mays]
          Length = 700

 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 76/385 (19%), Positives = 153/385 (39%), Gaps = 54/385 (14%)

Query: 88  IPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRK 147
           +P  +   +L++ L      + ++ L  E +KK  +LG     ++ N L       G+  
Sbjct: 296 LPDGFTYSILFDGLTRTGESQTMLSLFAESLKKGVMLGAYTCSILLNGLC----KDGKVA 351

Query: 148 TIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILA 207
               +   +    + P    ++ L+       ++ G   ++  MK   + P+ ++Y  L 
Sbjct: 352 KAKQVFEMLVHTGLVPTTVIYNTLINGYCQVRDLRGAFCIFEQMKSRHIRPDHITYNALI 411

Query: 208 TAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNV 267
                  + T AE  V  +EKS    +  T + LI  YG   +   LE+ +  + ++   
Sbjct: 412 NGLCKLEMVTKAEDLVMEMEKSGVDPSVETFNTLIDAYGTAGQ---LEKCFTVLSDMQQK 468

Query: 268 RSKSYVLA----IEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVY--------- 314
             KS V++    ++AF +  ++  A  +  +M         + YNS+I  Y         
Sbjct: 469 GIKSDVISFGSVVKAFCKNGKIPEAVAILDDMIYKDVAPNAQVYNSIIDAYIESGDTEQA 528

Query: 315 --------------------------CKNGFIDKASGLLKEMSMNGCKPNAITYRHLALG 348
                                     C++  ID+A  L+  +   G +P+ ++Y  +   
Sbjct: 529 LLLVEKMKNSGVSASIVTYNLLLKGLCRSSQIDEAEELIYTLRNQGLRPDVVSYNTIISA 588

Query: 349 CFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELK 408
           C      +   KALEL ++ +    +R   P L T  +++   A  G V + E L++++ 
Sbjct: 589 CCNKGDTD---KALEL-LQEMNKYGIR---PTLRTCHTLVSALASAGRVHDMECLYQQML 641

Query: 409 KANYTKYTFVYNTLIKAYVKAKIND 433
             N    + +Y  ++ AYV+ + ND
Sbjct: 642 HKNVEPSSSIYGIMVDAYVRCE-ND 665



 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 76/372 (20%), Positives = 155/372 (41%), Gaps = 24/372 (6%)

Query: 94  NELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNIL 153
           N + YN ++   +  G ++       +M   G   + + +N L+      GR      ++
Sbjct: 228 NRITYNTMIDGHVKGGDLEAGFRLRDQMLHDGPKPNVVTYNVLLSGLCRTGRMDETRALM 287

Query: 154 RQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHA-- 211
            +M +  + P   T+ IL          + ++ ++++  +  V     +  IL       
Sbjct: 288 DEMASHSMLPDGFTYSILFDGLTRTGESQTMLSLFAESLKKGVMLGAYTCSILLNGLCKD 347

Query: 212 --VARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPN--V 267
             VA+   V E  V       TG   +T+    ++ GY  + +DL   +   +++ +  +
Sbjct: 348 GKVAKAKQVFEMLVH------TGLVPTTVIYNTLINGY-CQVRDLRGAFCIFEQMKSRHI 400

Query: 268 RSK--SYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASG 325
           R    +Y   I    ++  V++AE+L +EM+      + E +N++I  Y   G ++K   
Sbjct: 401 RPDHITYNALINGLCKLEMVTKAEDLVMEMEKSGVDPSVETFNTLIDAYGTAGQLEKCFT 460

Query: 326 LLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTL 385
           +L +M   G K + I++  +     K+  + E    L+    +I     +   P  +   
Sbjct: 461 VLSDMQQKGIKSDVISFGSVVKAFCKNGKIPEAVAILD---DMI----YKDVAPNAQVYN 513

Query: 386 SIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKIND--PNLLRRMILG 443
           SII+ + E GD   A  L E++K +  +     YN L+K   ++   D    L+  +   
Sbjct: 514 SIIDAYIESGDTEQALLLVEKMKNSGVSASIVTYNLLLKGLCRSSQIDEAEELIYTLRNQ 573

Query: 444 GARPDAETYSLL 455
           G RPD  +Y+ +
Sbjct: 574 GLRPDVVSYNTI 585



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 75/371 (20%), Positives = 162/371 (43%), Gaps = 24/371 (6%)

Query: 94  NELLYNNLVIACLDKGVIKLSLEYMKKM-RVLGHSI-SYLVFNRLIILNSSPGRRKTIPN 151
           +   +N +V AC+  G + ++L  +++M R  G        +N +I      G+      
Sbjct: 156 DTFAWNKVVQACVAAGDLDVALAMLRRMGRSEGAPPPDAFSYNVVIAGLWRSGKGSDALK 215

Query: 152 ILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHA 211
           +  +M    VAP+  T++ ++       ++E   ++   M     +PN V+Y +L +   
Sbjct: 216 VFDEMVDMGVAPNRITYNTMIDGHVKGGDLEAGFRLRDQMLHDGPKPNVVTYNVLLS--G 273

Query: 212 VARLYTVAETYV---EALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQEL--PN 266
           + R   + ET     E    SM  + ++      IL+  L +  + + + +   E     
Sbjct: 274 LCRTGRMDETRALMDEMASHSMLPDGFT----YSILFDGLTRTGESQTMLSLFAESLKKG 329

Query: 267 VRSKSYVLAI--EAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKAS 324
           V   +Y  +I      +  +V++A++++  +     +  T  YN++I+ YC+   +  A 
Sbjct: 330 VMLGAYTCSILLNGLCKDGKVAKAKQVFEMLVHTGLVPTTVIYNTLINGYCQVRDLRGAF 389

Query: 325 GLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETT 384
            + ++M     +P+ ITY  L  G  K  +V    KA +L M++    +     P +ET 
Sbjct: 390 CIFEQMKSRHIRPDHITYNALINGLCKLEMVT---KAEDLVMEM----EKSGVDPSVETF 442

Query: 385 LSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVK-AKINDP-NLLRRMIL 442
            ++I+ +   G +     +  ++++         + +++KA+ K  KI +   +L  MI 
Sbjct: 443 NTLIDAYGTAGQLEKCFTVLSDMQQKGIKSDVISFGSVVKAFCKNGKIPEAVAILDDMIY 502

Query: 443 GGARPDAETYS 453
               P+A+ Y+
Sbjct: 503 KDVAPNAQVYN 513



 Score = 39.7 bits (91), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 35/153 (22%), Positives = 65/153 (42%), Gaps = 23/153 (15%)

Query: 59  RPKELDYSYLLEFTIKNHGISQGEKLFCCIPKDYQNELLYNNLVIACLDKGVIKLSLEYM 118
           R  ++D +  L +T++N G+               + + YN ++ AC +KG    +LE +
Sbjct: 556 RSSQIDEAEELIYTLRNQGLRP-------------DVVSYNTIISACCNKGDTDKALELL 602

Query: 119 KKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEA-- 176
           ++M   G   +    + L+   +S GR   +  + +QM    V P  S + I++      
Sbjct: 603 QEMNKYGIRPTLRTCHTLVSALASAGRVHDMECLYQQMLHKNVEPSSSIYGIMVDAYVRC 662

Query: 177 -NDHNIEGLMK-------VYSDMKRSEVEPNEV 201
            ND  +  L K        + D KRS  E + +
Sbjct: 663 ENDSKVASLKKEMSEKGIAFDDTKRSNHELDRI 695


>gi|302760809|ref|XP_002963827.1| hypothetical protein SELMODRAFT_79421 [Selaginella moellendorffii]
 gi|300169095|gb|EFJ35698.1| hypothetical protein SELMODRAFT_79421 [Selaginella moellendorffii]
          Length = 616

 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 80/342 (23%), Positives = 144/342 (42%), Gaps = 17/342 (4%)

Query: 96  LLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQ 155
           L  N LV      G ++ +LE +  M++ G     + +N +I      G+      IL+ 
Sbjct: 205 LTCNILVSGICKDGDVEEALEILDGMKLAGPVPDVITYNSIIHALCVAGKVVEAAEILKT 264

Query: 156 MKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARL 215
           M     +P + TF+ L+        +   ++V  +M R  + P+ ++Y IL   + + R+
Sbjct: 265 MSC---SPDLVTFNTLLDGFCKAGMLPRALEVLEEMCRENILPDVITYTILV--NGLCRV 319

Query: 216 YTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSKSYVLA 275
             V   +   LE+ +       +     L   L K  ++E     V+E+     ++ V+ 
Sbjct: 320 GQVQVAFY-LLEEIVRQGYIPDVIAYTSLVDGLCKSGEIEEAHKLVKEMSVRGCRTGVVM 378

Query: 276 ----IEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMS 331
               +  + R   V +A E+  EM S+  +     YN V+    K+G I KA  L+ ++ 
Sbjct: 379 YSSLVSGYCRAGNVHKAREILAEMVSINMVPPLFTYNIVLGGLIKDGSISKAVSLISDLV 438

Query: 332 MNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIF 391
             G  P+ +TY  L  G  K+N V E   A +L  ++ +    R   P   T  S++   
Sbjct: 439 ARGYVPDVVTYNTLIDGLCKANRVRE---ACDLADEMAS----RGCFPNDVTLGSVVFGL 491

Query: 392 AEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKIND 433
              G V +A +L  E+ +  +     VY +LI    K+   D
Sbjct: 492 CRVGRVDDAWSLVVEMSRKRHAPNVVVYTSLIDGLCKSDRMD 533



 Score = 68.6 bits (166), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 97/466 (20%), Positives = 183/466 (39%), Gaps = 60/466 (12%)

Query: 36  LRKLQLNKRALEVMEWVIRERPYRPKELDYSYLLEFTIKN-HGISQGEKLFCCIPKDYQN 94
           +R+      A++  +W   +  Y+     Y++LL+  +K+ H    G+     + KD  +
Sbjct: 1   MRRSSRPDLAIQFFDWAGEQDGYKHDVHSYNHLLDILVKSGHHFRTGK-----VYKDLLH 55

Query: 95  ELLYNNLV-IACLDKGVIKL-----SLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKT 148
                NLV    L +G  K      +LE+++ +     +    +FN LI      G    
Sbjct: 56  SGCSPNLVTFKILIRGNCKAGQAMRALEFLRALDEFSVAPDVYIFNVLIHGLFKDGNPDQ 115

Query: 149 IPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKR--SEVEPNEVSYCIL 206
              +   M++ +V P + T++ ++       N+E   ++  +M R   +  P+ V+Y  L
Sbjct: 116 AVKLFENMESSRVKPEIVTYNTVISGLCKSGNLEKARELLEEMIRKGGKSAPDIVTYNTL 175

Query: 207 ATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLI------------------------ 242
             A   A     A  + E ++ +    +  T ++L+                        
Sbjct: 176 INAFYRASRIREACAFREKMKAAGINPDVLTCNILVSGICKDGDVEEALEILDGMKLAGP 235

Query: 243 ---------ILYGYLAKGKDLE--RIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEEL 291
                    I++     GK +E   I  T+   P++ + + +L  + F +   + RA E+
Sbjct: 236 VPDVITYNSIIHALCVAGKVVEAAEILKTMSCSPDLVTFNTLL--DGFCKAGMLPRALEV 293

Query: 292 WLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFK 351
             EM     L     Y  +++  C+ G +  A  LL+E+   G  P+ I Y  L  G  K
Sbjct: 294 LEEMCRENILPDVITYTILVNGLCRVGQVQVAFYLLEEIVRQGYIPDVIAYTSLVDGLCK 353

Query: 352 SNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKAN 411
           S  +EE         KL+    VR     +    S++  +   G+V  A  +  E+   N
Sbjct: 354 SGEIEEAH-------KLVKEMSVRGCRTGVVMYSSLVSGYCRAGNVHKAREILAEMVSIN 406

Query: 412 YTKYTFVYNTLIKAYVK-AKINDP-NLLRRMILGGARPDAETYSLL 455
                F YN ++   +K   I+   +L+  ++  G  PD  TY+ L
Sbjct: 407 MVPPLFTYNIVLGGLIKDGSISKAVSLISDLVARGYVPDVVTYNTL 452



 Score = 40.4 bits (93), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 70/324 (21%), Positives = 123/324 (37%), Gaps = 47/324 (14%)

Query: 78  ISQGEKLFCCIPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLI 137
           I  G KL   +P    + + YN+++ A    G +  + E +K M     S   + FN L+
Sbjct: 226 ILDGMKLAGPVP----DVITYNSIIHALCVAGKVVEAAEILKTMSC---SPDLVTFNTLL 278

Query: 138 ILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVE 197
                 G       +L +M  + + P V T+ IL+        ++    +  ++ R    
Sbjct: 279 DGFCKAGMLPRALEVLEEMCRENILPDVITYTILVNGLCRVGQVQVAFYLLEEIVRQGYI 338

Query: 198 PNEVSYCILAT----------AHAVARLYTV--AETYV--------------------EA 225
           P+ ++Y  L            AH + +  +V    T V                    E 
Sbjct: 339 PDVIAYTSLVDGLCKSGEIEEAHKLVKEMSVRGCRTGVVMYSSLVSGYCRAGNVHKAREI 398

Query: 226 LEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQEL------PNVRSKSYVLAIEAF 279
           L + ++ N    L    I+ G L K   + +  + + +L      P+V   +Y   I+  
Sbjct: 399 LAEMVSINMVPPLFTYNIVLGGLIKDGSISKAVSLISDLVARGYVPDV--VTYNTLIDGL 456

Query: 280 GRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNA 339
            +  +V  A +L  EM S           SV+   C+ G +D A  L+ EMS     PN 
Sbjct: 457 CKANRVREACDLADEMASRGCFPNDVTLGSVVFGLCRVGRVDDAWSLVVEMSRKRHAPNV 516

Query: 340 ITYRHLALGCFKSNLVEEGFKALE 363
           + Y  L  G  KS+ +++    L+
Sbjct: 517 VVYTSLIDGLCKSDRMDDACMVLD 540


>gi|302143278|emb|CBI21839.3| unnamed protein product [Vitis vinifera]
          Length = 501

 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 83/379 (21%), Positives = 159/379 (41%), Gaps = 20/379 (5%)

Query: 3   RLPRGEPVGSAFQSWMREGFPVHRGEIFHSINRLRKLQLNKRALEVMEWVIRERPYRPKE 62
           R P+   +      W+ EG  V + ++   +  ++  +    ALE+ +W+   R +    
Sbjct: 32  RDPKAS-ISPLLNQWIEEGQTVSKPQLQSLVRIMKDFRRFHHALEISQWMTDRRYFTLTP 90

Query: 63  LDYSYLLEFTIKNHGISQGEKLFCCIPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMR 122
            D +  L+     HG  Q E  F  IP + +    Y  L+   + +  ++ +   M+KMR
Sbjct: 91  SDAAIRLDLISMVHGRVQAESYFNNIPNNLKTSSAYGALLSGYVREKSVEKAEATMQKMR 150

Query: 123 VLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIE 182
            +  + S   +N LI L S  G    I  ++++M++  +     T   LM       +I 
Sbjct: 151 EMDFATSSFPYNMLINLYSQTGNHGKIEALIQEMQSKAIPCDAFTVRNLMVAYVAASDIS 210

Query: 183 GLMKVYSDMKRSEVEPN-EVSYCILATAHAVARLYTVAETYVEALEKSMTG----NNWST 237
            + K    + R E +P+  V + I + A +      + +  +E L+K  +        S 
Sbjct: 211 AMEKF---LNRMEEDPHISVDWNIYSVAASGYLKVGLIDKALEMLKKIESNRPHLERLSA 267

Query: 238 LDVLIILYGYLAKGKDLERIWATVQ---ELPNVRSKSYVLAIEAFGRIAQVSRAEELWLE 294
              L+ LY      ++L R+W   +   E P    ++Y   I    ++  +  AE+++ E
Sbjct: 268 FKFLLSLYARTGHKQELYRVWNLYKPSYEYP----EAYSCMITCLTKLDDIEGAEKIFQE 323

Query: 295 MQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNL 354
            +    +      N ++S YCK    DKA  L+ ++ +    P A T+  LA G  +   
Sbjct: 324 WECECTMYDFRVLNRLLSAYCKRCLFDKAESLVNKV-IEERMPYASTWNILAKGYVEDKQ 382

Query: 355 VEEGFKALELGMKLITTKK 373
           +    KA+E+  K I+  +
Sbjct: 383 MP---KAVEMLKKAISVGR 398


>gi|357499719|ref|XP_003620148.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|217074978|gb|ACJ85849.1| unknown [Medicago truncatula]
 gi|355495163|gb|AES76366.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 465

 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 79/367 (21%), Positives = 136/367 (37%), Gaps = 78/367 (21%)

Query: 94  NELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNIL 153
           N + +  L+     KG I  +L +  K+  LG   + + +  LI      G  +   ++L
Sbjct: 156 NTITFTTLIKGLCLKGQIHQALNFHDKLVALGFQFNQISYGTLIDGLCKVGETRAALDLL 215

Query: 154 RQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVA 213
           R++    V P+V  +  ++     D ++     +YS+M    + PN V+Y  L     ++
Sbjct: 216 RRVDGKLVQPNVVMYSTIIDGMCKDKHVNDAFDLYSEMVSKGISPNVVTYSAL-----IS 270

Query: 214 RLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSKSYV 273
             +TV                           G L    DL     +    P+V   ++ 
Sbjct: 271 GFFTV---------------------------GKLKDAVDLFNKMISENIKPDVY--TFN 301

Query: 274 LAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMN 333
           + ++ F +  ++S A +L  EM    Q      Y+S++   CK   +DKA  LL ++   
Sbjct: 302 ILVDVFCKSGKISYALKLVDEMHDRGQPPNIVTYSSILDALCKTHRVDKAVALLTKLKDQ 361

Query: 334 GCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAE 393
           G +PN  TY  L                                          I+    
Sbjct: 362 GIRPNMHTYTIL------------------------------------------IDGLCT 379

Query: 394 KGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKIND--PNLLRRMILGGARPDAET 451
            G + +A N+FE+L    Y      Y  +   + K  + D    LL +M   G  PDA+T
Sbjct: 380 SGKLEDARNIFEDLLVKGYDITVVTYIVMFYGFCKKGLFDEASALLSKMEENGCIPDAKT 439

Query: 452 YSLLKLA 458
           Y L+KL+
Sbjct: 440 YELIKLS 446


>gi|302769103|ref|XP_002967971.1| hypothetical protein SELMODRAFT_145138 [Selaginella moellendorffii]
 gi|300164709|gb|EFJ31318.1| hypothetical protein SELMODRAFT_145138 [Selaginella moellendorffii]
          Length = 1354

 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 71/330 (21%), Positives = 151/330 (45%), Gaps = 15/330 (4%)

Query: 132 VFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMK-VYSD 190
           V+N L+ + +  G   ++  +L +M+     P + TF+I++K        EGL   +  D
Sbjct: 116 VYNSLMSVYARHGDWNSVQQLLCRMQDRGCRPDLVTFNIVIKARTRGGMQEGLASSLLQD 175

Query: 191 MKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAK 250
           +  + + P+ ++Y  L +A ++    + A    E +++     +  T + +I +YG   +
Sbjct: 176 VYAAGLRPDTITYNTLISACSLNNRLSDAILIFEEMQRQGCDPDIWTYNAMISVYGRAGR 235

Query: 251 GKDLERIWATVQE---LPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQY 307
            +    I+  +QE    P+  + + VL   AF R  ++   E +   M+  +       Y
Sbjct: 236 VEAASSIFRIMQEQGFTPDAVTYNSVL--HAFARDGRIEEVERIRGMMRDARCSSDEITY 293

Query: 308 NSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMK 367
           N++I +Y K G   KA  L  +M   G  P+++T+  L     K+  V E     E  +K
Sbjct: 294 NTMIHMYGKAGMHRKAEELYVQMKEEGRCPDSVTFTVLIDTLGKAGFVNEAAAMFEDMLK 353

Query: 368 LITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYV 427
                +VR   P L+   ++I  +A+     +AE+ +  + +A        Y+ ++  + 
Sbjct: 354 ----SQVR---PTLQAFSAMICAYAKADMFSDAEHTYSCMLRAGVRPDLLAYSVMLDVFF 406

Query: 428 KAKINDPNLL--RRMILGGARPDAETYSLL 455
           KA++ +  ++  + M+  G +P+   Y+++
Sbjct: 407 KAEMPEKCIILYKAMVGSGLKPELSVYAIM 436



 Score = 60.1 bits (144), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 69/311 (22%), Positives = 130/311 (41%), Gaps = 53/311 (17%)

Query: 187 VYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYG 246
           V+ D++R     N  +Y  L +A+A    +  A   ++ +  +    N +  + ++  +G
Sbjct: 657 VFRDLQRHGFAGNTSAYSALLSAYAETGNFERATRALDNMVAAGLQPNAACANYVLEAFG 716

Query: 247 YLAKGKDLERIWATVQEL---PNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQ------S 297
              K K+L   +  + E+   PN  S+++V+   AF R   +  A  ++ +M+      S
Sbjct: 717 RAGKAKELSEFYQRLPEMGITPN--SRTFVVIFHAFSRNGNLEEARSMYRQMREAGFSPS 774

Query: 298 VKQLKA-----------------------------TEQYNSVISVYCKNGFIDKASGLLK 328
           ++  KA                              + YN +IS+Y K G   KA+ + K
Sbjct: 775 IQVFKALLALYSRETVEIDAEELVKDIKKAGLELDMDIYNHMISLYSKLGSYRKAALVFK 834

Query: 329 EMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSII 388
            M   GC P+A T+  L +   ++ +V+E   A  L  ++I T     + P + T  ++I
Sbjct: 835 GMQEIGCSPDATTFNTLIMLYSRNQMVQE---AQALLREMIKT----GNAPNISTYTTLI 887

Query: 389 EIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKA----KINDPNLLRRMILGG 444
             +       +AE +F+ + +         YN +I  Y KA    KI +  ++ +M   G
Sbjct: 888 SAYGRLQAYEDAELVFKSIAETGCKPDATAYNVMINVYRKAGEHRKIEE--VIEQMKADG 945

Query: 445 ARPDAETYSLL 455
             P   T  +L
Sbjct: 946 FEPSLTTIHML 956



 Score = 59.7 bits (143), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 70/357 (19%), Positives = 147/357 (41%), Gaps = 10/357 (2%)

Query: 94   NELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNIL 153
            N   Y+ L+ A  + G  + +   +  M   G   +    N ++      G+ K +    
Sbjct: 669  NTSAYSALLSAYAETGNFERATRALDNMVAAGLQPNAACANYVLEAFGRAGKAKELSEFY 728

Query: 154  RQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVA 213
            +++    + P+  TF ++    + + N+E    +Y  M+ +   P+   +  L   ++  
Sbjct: 729  QRLPEMGITPNSRTFVVIFHAFSRNGNLEEARSMYRQMREAGFSPSIQVFKALLALYSRE 788

Query: 214  RLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELP-NVRSKSY 272
             +   AE  V+ ++K+    +    + +I LY  L   +    ++  +QE+  +  + ++
Sbjct: 789  TVEIDAEELVKDIKKAGLELDMDIYNHMISLYSKLGSYRKAALVFKGMQEIGCSPDATTF 848

Query: 273  VLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSM 332
               I  + R   V  A+ L  EM           Y ++IS Y +    + A  + K ++ 
Sbjct: 849  NTLIMLYSRNQMVQEAQALLREMIKTGNAPNISTYTTLISAYGRLQAYEDAELVFKSIAE 908

Query: 333  NGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFA 392
             GCKP+A  Y ++ +  ++     E  K  E    +I   K     P L T   +++ + 
Sbjct: 909  TGCKPDATAY-NVMINVYRK--AGEHRKIEE----VIEQMKADGFEPSLTTIHMLMDSYG 961

Query: 393  EKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAK--INDPNLLRRMILGGARP 447
            + G  G AE + E L +   +     Y ++I +++  K  ++    LR+M     RP
Sbjct: 962  KGGATGKAEEVLETLPEIGMSPDAIHYTSIINSHLNNKDYLSAVIWLRKMTDACVRP 1018



 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 59/320 (18%), Positives = 125/320 (39%), Gaps = 53/320 (16%)

Query: 94  NELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNIL 153
           + + YN L+ AC     +  ++   ++M+  G       +N +I +    GR +   +I 
Sbjct: 184 DTITYNTLISACSLNNRLSDAILIFEEMQRQGCDPDIWTYNAMISVYGRAGRVEAASSIF 243

Query: 154 RQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVA 213
           R M+     P   T++ ++   A D  IE + ++   M+ +    +E++Y          
Sbjct: 244 RIMQEQGFTPDAVTYNSVLHAFARDGRIEEVERIRGMMRDARCSSDEITY---------- 293

Query: 214 RLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQE---LPNVRSK 270
                                    + +I +YG     +  E ++  ++E    P+  S 
Sbjct: 294 -------------------------NTMIHMYGKAGMHRKAEELYVQMKEEGRCPD--SV 326

Query: 271 SYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEM 330
           ++ + I+  G+   V+ A  ++ +M   +     + ++++I  Y K      A      M
Sbjct: 327 TFTVLIDTLGKAGFVNEAAAMFEDMLKSQVRPTLQAFSAMICAYAKADMFSDAEHTYSCM 386

Query: 331 SMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSST---PWLETTLSI 387
              G +P+ + Y         S +++  FKA E+  K I   K    +   P L     +
Sbjct: 387 LRAGVRPDLLAY---------SVMLDVFFKA-EMPEKCIILYKAMVGSGLKPELSVYAIM 436

Query: 388 IEIFAEKGDVGNAENLFEEL 407
           + +F +K  +   ENL +E+
Sbjct: 437 VRVFYQKSSLAEIENLSKEM 456



 Score = 50.1 bits (118), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 46/252 (18%), Positives = 114/252 (45%), Gaps = 8/252 (3%)

Query: 116  EYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIE 175
            E +K ++  G  +   ++N +I L S  G  +    + + M+    +P  +TF+ L+ + 
Sbjct: 796  ELVKDIKKAGLELDMDIYNHMISLYSKLGSYRKAALVFKGMQEIGCSPDATTFNTLIMLY 855

Query: 176  ANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNW 235
            + +  ++    +  +M ++   PN  +Y  L +A+   + Y  AE   +++ ++    + 
Sbjct: 856  SRNQMVQEAQALLREMIKTGNAPNISTYTTLISAYGRLQAYEDAELVFKSIAETGCKPDA 915

Query: 236  STLDVLIILYGYLAKGKDLERIWATVQELPNVRSKSYV-LAIEAFGRIAQVSRAEELWLE 294
            +  +V+I +Y    + + +E +   ++      S + + + ++++G+     +AEE+   
Sbjct: 916  TAYNVMINVYRKAGEHRKIEEVIEQMKADGFEPSLTTIHMLMDSYGKGGATGKAEEVLET 975

Query: 295  MQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCF--KS 352
            +  +        Y S+I+ +  N     A   L++M+    +P      H+ + CF   +
Sbjct: 976  LPEIGMSPDAIHYTSIINSHLNNKDYLSAVIWLRKMTDACVRPT-----HVTITCFVGAA 1030

Query: 353  NLVEEGFKALEL 364
            ++ E    AL L
Sbjct: 1031 SVCERSSHALML 1042



 Score = 49.3 bits (116), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 42/191 (21%), Positives = 91/191 (47%), Gaps = 17/191 (8%)

Query: 269 SKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLK 328
           S  +V  I ++G++     AE ++ ++Q       T  Y++++S Y + G  ++A+  L 
Sbjct: 635 SAMHVAIIASYGKLKLWQNAEIVFRDLQRHGFAGNTSAYSALLSAYAETGNFERATRALD 694

Query: 329 EMSMNGCKPNAITYRHL--ALG-CFKSNLVEEGFKAL-ELGMKLITTKKVRSSTPWLETT 384
            M   G +PNA    ++  A G   K+  + E ++ L E+G+           TP   T 
Sbjct: 695 NMVAAGLQPNAACANYVLEAFGRAGKAKELSEFYQRLPEMGI-----------TPNSRTF 743

Query: 385 LSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVK--AKINDPNLLRRMIL 442
           + I   F+  G++  A +++ ++++A ++    V+  L+  Y +   +I+   L++ +  
Sbjct: 744 VVIFHAFSRNGNLEEARSMYRQMREAGFSPSIQVFKALLALYSRETVEIDAEELVKDIKK 803

Query: 443 GGARPDAETYS 453
            G   D + Y+
Sbjct: 804 AGLELDMDIYN 814



 Score = 41.2 bits (95), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 46/208 (22%), Positives = 93/208 (44%), Gaps = 15/208 (7%)

Query: 246 GYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATE 305
           G L+  +DL    ++++  P+V +  Y        +  + S AEE     Q+  Q + ++
Sbjct: 509 GKLSDARDLVHAVSSIE--PSVAAHLYKRLALMLAKAGRFSEAEEEMRTSQTYGQAQVSD 566

Query: 306 QYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFK--ALE 363
               +++ Y + G  D+A     +M+  G + +A   +  A+ C+      +GF   A E
Sbjct: 567 FLKVLVASYDRAGMQDEALARFLDMTTEGLEMDAEVLQ-TAVMCY----CRKGFAFVAHE 621

Query: 364 LGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLI 423
           L +  +   +V+ S       ++II  + +     NAE +F +L++  +   T  Y+ L+
Sbjct: 622 LLIDCLHAFEVKDSA----MHVAIIASYGKLKLWQNAEIVFRDLQRHGFAGNTSAYSALL 677

Query: 424 KAYVKAKIND--PNLLRRMILGGARPDA 449
            AY +    +     L  M+  G +P+A
Sbjct: 678 SAYAETGNFERATRALDNMVAAGLQPNA 705


>gi|449436409|ref|XP_004135985.1| PREDICTED: pentatricopeptide repeat-containing protein At2g31400,
           chloroplastic-like [Cucumis sativus]
          Length = 868

 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 58/255 (22%), Positives = 114/255 (44%), Gaps = 5/255 (1%)

Query: 94  NELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNIL 153
           + + YN+L+  C   G+ + +     +M   G       +N L+      G+      I+
Sbjct: 292 DRITYNSLLAVCSRGGLWEAARNLFNEMIDRGIDQDVFTYNTLLDAVCKGGQMDLAYEIM 351

Query: 154 RQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVA 213
            +M   K+ P+V T+  +    A    +E  + +Y++MK   +  + VSY  L + +A  
Sbjct: 352 LEMPGKKILPNVVTYSTMADGYAKAGRLEDALNLYNEMKFLGIGLDRVSYNTLLSIYAKL 411

Query: 214 RLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQE---LPNVRSK 270
             +  A    + +  S    +  T + L+  YG   K  ++ R++  +++    PN+ + 
Sbjct: 412 GRFEDALKVCKEMGSSGVKKDVVTYNALLDGYGKQGKFNEVTRVFKEMKKDRVFPNLLT- 470

Query: 271 SYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEM 330
            Y   I+ + + +    A E++ E +          Y+ +I+  CKNG +D A  LL EM
Sbjct: 471 -YSTLIDVYSKGSLYEEAMEVFREFKQAGLKADVVLYSELINALCKNGLVDSAVLLLDEM 529

Query: 331 SMNGCKPNAITYRHL 345
           +  G +PN +TY  +
Sbjct: 530 TKEGIRPNVVTYNSI 544



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 92/420 (21%), Positives = 169/420 (40%), Gaps = 54/420 (12%)

Query: 18  MREGFPVHRGEI----FHSINRLRKLQLNKRALEVMEWVIRERPYRPKELDYSYLLEFTI 73
           +REG    RG++      ++ RL K++L K    V E  + E  Y      +S L+    
Sbjct: 178 VREGRKNERGKLASAMISTLGRLGKVELAKG---VFETALSE-GYGNTVFAFSALISAYG 233

Query: 74  KNHGISQGEKLFCCIPKD--YQNELLYNNLVIACLDKGV-IKLSLEYMKKMRVLGHSISY 130
           K+    +  K+F  +       N + YN ++ AC   GV  K  +E  ++M   G     
Sbjct: 234 KSGYFDEAIKVFESMKVSGLKPNLVTYNAVIDACGKGGVEFKRVVEIFEEMLRNGVQPDR 293

Query: 131 LVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSD 190
           + +N L+ + S  G  +   N+  +M    +   V T++ L+        ++   ++  +
Sbjct: 294 ITYNSLLAVCSRGGLWEAARNLFNEMIDRGIDQDVFTYNTLLDAVCKGGQMDLAYEIMLE 353

Query: 191 MKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAK 250
           M   ++ PN V+Y  +A  +A A            LE ++  N ++ +  L         
Sbjct: 354 MPGKKILPNVVTYSTMADGYAKAG----------RLEDAL--NLYNEMKFL--------- 392

Query: 251 GKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSV 310
           G  L+R+             SY   +  + ++ +   A ++  EM S    K    YN++
Sbjct: 393 GIGLDRV-------------SYNTLLSIYAKLGRFEDALKVCKEMGSSGVKKDVVTYNAL 439

Query: 311 ISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKAL-ELGMKLI 369
           +  Y K G  ++ + + KEM  +   PN +TY  L     K +L EE  +   E     +
Sbjct: 440 LDGYGKQGKFNEVTRVFKEMKKDRVFPNLLTYSTLIDVYSKGSLYEEAMEVFREFKQAGL 499

Query: 370 TTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKA 429
               V  S         +I    + G V +A  L +E+ K         YN++I A+ ++
Sbjct: 500 KADVVLYS--------ELINALCKNGLVDSAVLLLDEMTKEGIRPNVVTYNSIIDAFGRS 551



 Score = 55.8 bits (133), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 49/192 (25%), Positives = 86/192 (44%), Gaps = 8/192 (4%)

Query: 266 NVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASG 325
           N R K     I   GR+ +V  A+ ++    S         ++++IS Y K+G+ D+A  
Sbjct: 184 NERGKLASAMISTLGRLGKVELAKGVFETALSEGYGNTVFAFSALISAYGKSGYFDEAIK 243

Query: 326 LLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTL 385
           + + M ++G KPN +TY  +   C K  +  E  + +E+  +++         P   T  
Sbjct: 244 VFESMKVSGLKPNLVTYNAVIDACGKGGV--EFKRVVEIFEEMLRN----GVQPDRITYN 297

Query: 386 SIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKINDPNLLRRMILGGA 445
           S++ + +  G    A NLF E+      +  F YNTL+ A  K    D      + + G 
Sbjct: 298 SLLAVCSRGGLWEAARNLFNEMIDRGIDQDVFTYNTLLDAVCKGGQMDLAYEIMLEMPGK 357

Query: 446 R--PDAETYSLL 455
           +  P+  TYS +
Sbjct: 358 KILPNVVTYSTM 369



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 66/357 (18%), Positives = 133/357 (37%), Gaps = 59/357 (16%)

Query: 106 LDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHV 165
           L KGV + +L         G+  +   F+ LI      G       +   MK   + P++
Sbjct: 205 LAKGVFETALSE-------GYGNTVFAFSALISAYGKSGYFDEAIKVFESMKVSGLKPNL 257

Query: 166 STFHILMKIEANDH-NIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVE 224
            T++ ++          + +++++ +M R+ V+P+ ++Y  L    +   L+  A     
Sbjct: 258 VTYNAVIDACGKGGVEFKRVVEIFEEMLRNGVQPDRITYNSLLAVCSRGGLWEAARNLFN 317

Query: 225 ALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVR----SKSYVLAIEAFG 280
            +       +  T + L+     + KG  ++  +  + E+P  +      +Y    + + 
Sbjct: 318 EMIDRGIDQDVFTYNTLL---DAVCKGGQMDLAYEIMLEMPGKKILPNVVTYSTMADGYA 374

Query: 281 RIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAI 340
           +  ++  A  L+ EM+ +        YN+++S+Y K G  + A  + KEM  +G K + +
Sbjct: 375 KAGRLEDALNLYNEMKFLGIGLDRVSYNTLLSIYAKLGRFEDALKVCKEMGSSGVKKDVV 434

Query: 341 TYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNA 400
           TY  L  G                                          + ++G     
Sbjct: 435 TYNALLDG------------------------------------------YGKQGKFNEV 452

Query: 401 ENLFEELKKANYTKYTFVYNTLIKAYVKAKINDPNL--LRRMILGGARPDAETYSLL 455
             +F+E+KK         Y+TLI  Y K  + +  +   R     G + D   YS L
Sbjct: 453 TRVFKEMKKDRVFPNLLTYSTLIDVYSKGSLYEEAMEVFREFKQAGLKADVVLYSEL 509


>gi|242093812|ref|XP_002437396.1| hypothetical protein SORBIDRAFT_10g026180 [Sorghum bicolor]
 gi|241915619|gb|EER88763.1| hypothetical protein SORBIDRAFT_10g026180 [Sorghum bicolor]
          Length = 786

 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 82/366 (22%), Positives = 157/366 (42%), Gaps = 19/366 (5%)

Query: 98  YNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRR-KTIPNILRQM 156
           Y  ++ A    G  + ++E   ++R  G + + + +N ++ +    GR    I  +L +M
Sbjct: 176 YTTVLHALSRAGRYERAVELFAELRRQGVAPTLVTYNVVLDVYGRMGRSWPRIVALLDEM 235

Query: 157 KADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLY 216
           +A  V P   T   ++     D  ++  +  + D+K     P  V+Y  L      A  Y
Sbjct: 236 RAAGVEPDDFTASTVIAACCRDGLVDEAVAFFEDLKARGHTPCVVTYNALLQVFGKAGNY 295

Query: 217 TVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQE---LPNVRSKSYV 273
           T A   ++ +E+     +  T + L   Y      ++  +   T+     LPN  + +Y 
Sbjct: 296 TEALRVLKEMEQDGCQPDAVTYNELAGTYARAGFYEEAAKCLDTMTSKGLLPN--AFTYN 353

Query: 274 LAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMN 333
             + A+G I +V  A  L+ +M+    +     YN ++ +  K         +L EMS +
Sbjct: 354 TVMTAYGNIGKVDEALALFDQMKKSGCVPNVNTYNFILGMLGKKSRFTVMLEMLGEMSRS 413

Query: 334 GCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAE 393
           GC PN +T+  +   C K  + +   + LE GMK    +  R      +T  ++I  +  
Sbjct: 414 GCTPNRVTWNTMLAVCGKRGMEDYVTRVLE-GMKSCGVELSR------DTYNTLIAAYGR 466

Query: 394 KGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKIND----PNLLRRMILGGARPDA 449
            G   NA  ++ E+  A +      YN L+   V ++  D     +++ +M   G +P+ 
Sbjct: 467 CGSRTNAFKMYNEMTSAGFAPCLTTYNALLN--VLSRQGDWSTAQSIVSKMRTKGFKPND 524

Query: 450 ETYSLL 455
           ++YSLL
Sbjct: 525 QSYSLL 530



 Score = 72.4 bits (176), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 76/405 (18%), Positives = 158/405 (39%), Gaps = 55/405 (13%)

Query: 94  NELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNIL 153
           ++   + ++ AC   G++  ++ + + ++  GH+   + +N L+ +    G       +L
Sbjct: 243 DDFTASTVIAACCRDGLVDEAVAFFEDLKARGHTPCVVTYNALLQVFGKAGNYTEALRVL 302

Query: 154 RQMKADKVAP-----------------------------------HVSTFHILMKIEAND 178
           ++M+ D   P                                   +  T++ +M    N 
Sbjct: 303 KEMEQDGCQPDAVTYNELAGTYARAGFYEEAAKCLDTMTSKGLLPNAFTYNTVMTAYGNI 362

Query: 179 HNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTL 238
             ++  + ++  MK+S   PN  +Y  +         +TV    +  + +S    N  T 
Sbjct: 363 GKVDEALALFDQMKKSGCVPNVNTYNFILGMLGKKSRFTVMLEMLGEMSRSGCTPNRVTW 422

Query: 239 DVLIILYGYLAKGKDLERIWATVQELP-NVRSKSYVLAIEAFGRIAQVSRAEELWLEMQS 297
           + ++ + G       + R+   ++     +   +Y   I A+GR    + A +++ EM S
Sbjct: 423 NTMLAVCGKRGMEDYVTRVLEGMKSCGVELSRDTYNTLIAAYGRCGSRTNAFKMYNEMTS 482

Query: 298 VKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEE 357
                    YN++++V  + G    A  ++ +M   G KPN  +Y  L L C+       
Sbjct: 483 AGFAPCLTTYNALLNVLSRQGDWSTAQSIVSKMRTKGFKPNDQSY-SLLLQCYAKGGNIA 541

Query: 358 GFKALELGMKLITTKKVRSST---PWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTK 414
           G  A+E        K+V   T    W+     +I  F  +  +G  E  F+E+K   Y  
Sbjct: 542 GIDAIE--------KEVYGGTVFPSWVILRTLVIANFKCR-RLGGIEKAFQEVKARGYNP 592

Query: 415 YTFVYNTLIKAYVK----AKINDPNLLRRMILGGARPDAETYSLL 455
              ++N+++  Y K    +K+ +  +   +   G  PD  TY+ L
Sbjct: 593 DLVIFNSMLSMYAKNGMYSKVTE--IFDSIKQSGLSPDLITYNSL 635



 Score = 64.7 bits (156), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 69/354 (19%), Positives = 152/354 (42%), Gaps = 30/354 (8%)

Query: 87  CIPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRR 146
           C P    N + +N ++  C  +G+       ++ M+  G  +S   +N LI      G R
Sbjct: 415 CTP----NRVTWNTMLAVCGKRGMEDYVTRVLEGMKSCGVELSRDTYNTLIAAYGRCGSR 470

Query: 147 KTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCIL 206
                +  +M +   AP ++T++ L+ + +   +      + S M+    +PN+ SY +L
Sbjct: 471 TNAFKMYNEMTSAGFAPCLTTYNALLNVLSRQGDWSTAQSIVSKMRTKGFKPNDQSYSLL 530

Query: 207 ATAHAVARLYTVAETYVEALEKSMTGN----NWSTLDVLIILYGYLAKGKDLERIWATVQ 262
              +A  +   +A   ++A+EK + G     +W  L  L+I      +   +E+ +  V+
Sbjct: 531 LQCYA--KGGNIAG--IDAIEKEVYGGTVFPSWVILRTLVIANFKCRRLGGIEKAFQEVK 586

Query: 263 EL---PNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQ---YNSVISVYCK 316
                P++   + +L++  + +    S+  E++    S+KQ   +     YNS++ +Y K
Sbjct: 587 ARGYNPDLVIFNSMLSM--YAKNGMYSKVTEIF---DSIKQSGLSPDLITYNSLMDMYAK 641

Query: 317 NGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRS 376
                +A  +L ++  +  KP+ ++Y  +  G  K  L++E         ++++      
Sbjct: 642 CSESWEAEKILNQLKSSQVKPDVVSYNTVINGFCKQGLIKE-------AQRILSEMIADG 694

Query: 377 STPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAK 430
             P + T  +++  +A       A  +   + + N       Y  ++ +Y KAK
Sbjct: 695 MAPCVVTYHTLVGGYASLEMFSEAREVINYMIQHNLKPMELTYRRVVDSYCKAK 748



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 51/212 (24%), Positives = 89/212 (41%), Gaps = 15/212 (7%)

Query: 255 ERIWATVQELP-----NVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNS 309
           + + A + E+P      +  ++Y   + A  R  +  RA EL+ E++          YN 
Sbjct: 154 DAVCALLDEMPLPPGSRLDVRAYTTVLHALSRAGRYERAVELFAELRRQGVAPTLVTYNV 213

Query: 310 VISVYCKNG-FIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKL 368
           V+ VY + G    +   LL EM   G +P+  T   +   C +  LV+E     E     
Sbjct: 214 VLDVYGRMGRSWPRIVALLDEMRAAGVEPDDFTASTVIAACCRDGLVDEAVAFFE----- 268

Query: 369 ITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVK 428
               K R  TP + T  +++++F + G+   A  + +E+++         YN L   Y +
Sbjct: 269 --DLKARGHTPCVVTYNALLQVFGKAGNYTEALRVLKEMEQDGCQPDAVTYNELAGTYAR 326

Query: 429 AKIND--PNLLRRMILGGARPDAETYSLLKLA 458
           A   +     L  M   G  P+A TY+ +  A
Sbjct: 327 AGFYEEAAKCLDTMTSKGLLPNAFTYNTVMTA 358



 Score = 40.0 bits (92), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 60/236 (25%), Positives = 105/236 (44%), Gaps = 17/236 (7%)

Query: 24  VHRGEIFHSINRLRKLQLNK---RALEVMEWVIRE---RPYRPKELDYSYLLEFTIKNHG 77
           V+ G +F S   LR L +     R L  +E   +E   R Y P  + ++ +L    KN  
Sbjct: 550 VYGGTVFPSWVILRTLVIANFKCRRLGGIEKAFQEVKARGYNPDLVIFNSMLSMYAKNGM 609

Query: 78  ISQGEKLFCCIPKD--YQNELLYNNLV---IACLDKGVIKLSLEYMKKMRVLGHSISYLV 132
            S+  ++F  I +     + + YN+L+     C +    +  L  +K  +V    +SY  
Sbjct: 610 YSKVTEIFDSIKQSGLSPDLITYNSLMDMYAKCSESWEAEKILNQLKSSQVKPDVVSY-- 667

Query: 133 FNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMK 192
            N +I      G  K    IL +M AD +AP V T+H L+   A+        +V + M 
Sbjct: 668 -NTVINGFCKQGLIKEAQRILSEMIADGMAPCVVTYHTLVGGYASLEMFSEAREVINYMI 726

Query: 193 RSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYL 248
           +  ++P E++Y  +  ++  A+ +  A +++   E S T  N+    VL  L  Y+
Sbjct: 727 QHNLKPMELTYRRVVDSYCKAKRFEEARSFLS--EVSETDPNFDK-KVLHTLAAYI 779


>gi|224123314|ref|XP_002319048.1| predicted protein [Populus trichocarpa]
 gi|222857424|gb|EEE94971.1| predicted protein [Populus trichocarpa]
          Length = 497

 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 86/373 (23%), Positives = 162/373 (43%), Gaps = 26/373 (6%)

Query: 94  NELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNIL 153
           N + ++ L+     K  I  +++   +M  +G+    + ++ +I      G       +L
Sbjct: 46  NHVTFSTLLNGLSSKAKIIDAVKLFDEMVKMGYEPDVITYSTIINGLCKMGSTTMAIQLL 105

Query: 154 RQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVA 213
           ++M+     P+V  +  ++     D  I   M+  S+M    + PN V+Y   +  H   
Sbjct: 106 KKMEEKGCKPNVVVYSTIIDSLCKDKLITEAMEFLSEMVNRGISPNVVTYS--SILHGFC 163

Query: 214 RLYTVAETYVEALEKSMTGNNW--STLDVLIILYGYLAKGKDLER--IWATVQEL---PN 266
            L    E    +L K M   N    T+   I++ G   +G  LE   ++ T+ E    PN
Sbjct: 164 NLGRSNEA--TSLFKQMVERNVMPDTVTFNILVDGLSKEGMILEAQCVFETMIEKGVEPN 221

Query: 267 VRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGL 326
           V +  Y   ++ +   +Q+  A++L+  M       +   YN +I  +CK+G ID+A GL
Sbjct: 222 VNT--YNALMDGYCSQSQMDEAQKLFNIMVRKGCAPSVRSYNILIKGHCKSGRIDEAKGL 279

Query: 327 LKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSST--PWLETT 384
           L EMS     P+ +TY  L  G  +    ++  K LE         ++RS    P L T 
Sbjct: 280 LAEMSHKALTPDTVTYSTLMKGFCQDGRPQDAQKLLE---------EMRSYGLLPDLMTY 330

Query: 385 LSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVK-AKINDP-NLLRRMIL 442
             +++   ++G +  A  L + ++++      F+Y  LI+      K+     L   + +
Sbjct: 331 SIVLDGLCKQGHLDEAFELLKAMQESKIEPNIFIYTILIQGMCNFGKLEAARELFSNLFV 390

Query: 443 GGARPDAETYSLL 455
            G +PD  TY+++
Sbjct: 391 KGIQPDVVTYTVM 403



 Score = 63.2 bits (152), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 87/400 (21%), Positives = 162/400 (40%), Gaps = 25/400 (6%)

Query: 33  INRLRKLQLNKRALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQGEKLFCCIPKD- 91
           IN L K+     A+++++  + E+  +P  + YS +++   K+  I++  +    +    
Sbjct: 89  INGLCKMGSTTMAIQLLKK-MEEKGCKPNVVVYSTIIDSLCKDKLITEAMEFLSEMVNRG 147

Query: 92  -YQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIP 150
              N + Y++++    + G    +    K+M         + FN L+   S  G      
Sbjct: 148 ISPNVVTYSSILHGFCNLGRSNEATSLFKQMVERNVMPDTVTFNILVDGLSKEGMILEAQ 207

Query: 151 NILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAH 210
            +   M    V P+V+T++ LM    +   ++   K+++ M R    P+  SY IL   H
Sbjct: 208 CVFETMIEKGVEPNVNTYNALMDGYCSQSQMDEAQKLFNIMVRKGCAPSVRSYNILIKGH 267

Query: 211 A-VARLYTVAETYVEALEKSMTGNN--WSTLDVLIILYGYLAKGK--DLERIWATVQE-- 263
               R+        E   K++T +   +STL     + G+   G+  D +++   ++   
Sbjct: 268 CKSGRIDEAKGLLAEMSHKALTPDTVTYSTL-----MKGFCQDGRPQDAQKLLEEMRSYG 322

Query: 264 -LPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDK 322
            LP++ + S VL  +   +   +  A EL   MQ  K       Y  +I   C  G ++ 
Sbjct: 323 LLPDLMTYSIVL--DGLCKQGHLDEAFELLKAMQESKIEPNIFIYTILIQGMCNFGKLEA 380

Query: 323 ASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLE 382
           A  L   + + G +P+ +TY  +  G  K  L  E         +L     V    P   
Sbjct: 381 ARELFSNLFVKGIQPDVVTYTVMISGLLKGGLSNEA-------CELFRDMAVHGCLPNSC 433

Query: 383 TTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTL 422
           T   II+ F   GD  NA  L EE+    ++  +  +  L
Sbjct: 434 TYNVIIQGFLRNGDTSNAGRLIEEMVGRGFSADSSTFQML 473



 Score = 60.8 bits (146), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 71/314 (22%), Positives = 129/314 (41%), Gaps = 22/314 (7%)

Query: 151 NILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAH 210
           ++L  M    + P+  TF  L+   ++   I   +K++ +M +   EP+ ++Y  +    
Sbjct: 33  SVLGNMFKLGLQPNHVTFSTLLNGLSSKAKIIDAVKLFDEMVKMGYEPDVITYSTIINGL 92

Query: 211 AVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQEL------ 264
                 T+A   ++ +E+     N      +I     L K K +      + E+      
Sbjct: 93  CKMGSTTMAIQLLKKMEEKGCKPNVVVYSTII---DSLCKDKLITEAMEFLSEMVNRGIS 149

Query: 265 PNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKAS 324
           PNV + S +L    F  + + + A  L+ +M     +  T  +N ++    K G I +A 
Sbjct: 150 PNVVTYSSIL--HGFCNLGRSNEATSLFKQMVERNVMPDTVTFNILVDGLSKEGMILEAQ 207

Query: 325 GLLKEMSMNGCKPNAITYRHLALG-CFKSNLVEEGFKALELGMKLITTKKVRSSTPWLET 383
            + + M   G +PN  TY  L  G C +S + E          KL      +   P + +
Sbjct: 208 CVFETMIEKGVEPNVNTYNALMDGYCSQSQMDE--------AQKLFNIMVRKGCAPSVRS 259

Query: 384 TLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVK-AKINDPN-LLRRMI 441
              +I+   + G +  A+ L  E+     T  T  Y+TL+K + +  +  D   LL  M 
Sbjct: 260 YNILIKGHCKSGRIDEAKGLLAEMSHKALTPDTVTYSTLMKGFCQDGRPQDAQKLLEEMR 319

Query: 442 LGGARPDAETYSLL 455
             G  PD  TYS++
Sbjct: 320 SYGLLPDLMTYSIV 333



 Score = 44.3 bits (103), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 50/225 (22%), Positives = 93/225 (41%), Gaps = 5/225 (2%)

Query: 125 GHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGL 184
           G + S   +N LI  +   GR      +L +M    + P   T+  LMK    D   +  
Sbjct: 252 GCAPSVRSYNILIKGHCKSGRIDEAKGLLAEMSHKALTPDTVTYSTLMKGFCQDGRPQDA 311

Query: 185 MKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLI-- 242
            K+  +M+   + P+ ++Y I+            A   ++A+++S    N     +LI  
Sbjct: 312 QKLLEEMRSYGLLPDLMTYSIVLDGLCKQGHLDEAFELLKAMQESKIEPNIFIYTILIQG 371

Query: 243 -ILYGYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQL 301
              +G L   ++L          P+V +  Y + I    +    + A EL+ +M     L
Sbjct: 372 MCNFGKLEAARELFSNLFVKGIQPDVVT--YTVMISGLLKGGLSNEACELFRDMAVHGCL 429

Query: 302 KATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLA 346
             +  YN +I  + +NG    A  L++EM   G   ++ T++ L+
Sbjct: 430 PNSCTYNVIIQGFLRNGDTSNAGRLIEEMVGRGFSADSSTFQMLS 474


>gi|302821471|ref|XP_002992398.1| hypothetical protein SELMODRAFT_135281 [Selaginella moellendorffii]
 gi|300139814|gb|EFJ06548.1| hypothetical protein SELMODRAFT_135281 [Selaginella moellendorffii]
          Length = 698

 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 96/437 (21%), Positives = 176/437 (40%), Gaps = 72/437 (16%)

Query: 97  LYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQM 156
           +YN+L+ AC         + +++K++  G       +  L++     GR      +L +M
Sbjct: 249 VYNDLIFACGQAHKPNEGMFFLEKLQASGLVADRDSYISLMLSLGKHGRTAEAEALLEEM 308

Query: 157 KADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLY 216
           K   + P++  ++ L+   +    ++ +  V + ++ + +  N+++YC+L  A+A A L 
Sbjct: 309 KWYGLRPNLKAYNTLLGGYSRKGQLQQIDTVKTLLRDTGMSINKITYCLLIDAYARAGLM 368

Query: 217 TVAETYVEALEKSMTGNNWSTLDVLIILY---GYLAKGKDLERIWATVQELPNVRSKSYV 273
              E   + +       N      +I +Y   G   KG  L R        P+  +  Y 
Sbjct: 369 DRLEALYQEMRDCDIRPNTYMYARMITIYRDTGQWQKGVKLLREMQQAGVTPD--AHVYN 426

Query: 274 LAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMN 333
           + I  FGR  Q+ +A   + +MQ          +NS+I   CK G   +A  L  +M  +
Sbjct: 427 VIINTFGRTRQLEQARIAFFKMQDGGIEPDVVSWNSLIDACCKAGQPLEARKLYYKMVND 486

Query: 334 GCKP-----------------------------------NAITYRHL------------A 346
           GC P                                   N +TY  L            A
Sbjct: 487 GCAPTAQTFNIVIHGLGEHKRWNDVNEMVEEMRSKGMFPNVVTYTTLVDVYAQARLFQDA 546

Query: 347 LGCFKSNLVEEG-------FKAL-----ELGMKLITTKKVRS-STPWLETTLS----IIE 389
           + C ++ + E+G       + AL     +LGM   T   +++     +E  L+    +I 
Sbjct: 547 VECLQT-MKEDGMGPSPTAYSALANAYAQLGMCEQTLHVLQTMEKENIEINLAMLNLLIN 605

Query: 390 IFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKIND--PNLLRRMILGGARP 447
            F+  G    A  +FE +K+A  T     Y TL+KA ++A+  D    +   MI  G RP
Sbjct: 606 AFSMAGRSQEAFAVFEYIKEAGLTADKITYTTLMKALIRAEKLDEVSGVFDEMIKAGCRP 665

Query: 448 DAETYSLLKLAEQFQKK 464
           D +   +L+ A +F+++
Sbjct: 666 DGKAKDMLRSAFRFKER 682



 Score = 52.4 bits (124), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 87/399 (21%), Positives = 149/399 (37%), Gaps = 50/399 (12%)

Query: 98  YNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLI------ILNSSPGRRKTIPN 151
           YN LV A         +LE + KM+ LG     + +  +I      +++   G R     
Sbjct: 179 YNALVGAYAQNRDYGKALETLSKMKTLGFPPDVVSYTHVIQACRHGVVDIYTGFR----- 233

Query: 152 ILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHA 211
           + ++M+A+ V      ++ L+      H     M     ++ S +  +  SY  L  +  
Sbjct: 234 LFQEMQAEGVQVDGKVYNDLIFACGQAHKPNEGMFFLEKLQASGLVADRDSYISLMLSLG 293

Query: 212 VARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQEL-----PN 266
                  AE  +E ++      N    + L  L GY  KG+ L++I  TV+ L      +
Sbjct: 294 KHGRTAEAEALLEEMKWYGLRPNLKAYNTL--LGGYSRKGQ-LQQI-DTVKTLLRDTGMS 349

Query: 267 VRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGL 326
           +   +Y L I+A+ R   + R E L+ EM+       T  Y  +I++Y   G   K   L
Sbjct: 350 INKITYCLLIDAYARAGLMDRLEALYQEMRDCDIRPNTYMYARMITIYRDTGQWQKGVKL 409

Query: 327 LKEMSMNGCKPNAITYRHLALGCFKSNLVEEG----FKALELGM---------------- 366
           L+EM   G  P+A  Y  +     ++  +E+     FK  + G+                
Sbjct: 410 LREMQQAGVTPDAHVYNVIINTFGRTRQLEQARIAFFKMQDGGIEPDVVSWNSLIDACCK 469

Query: 367 --------KLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFV 418
                   KL          P  +T   +I    E     +   + EE++          
Sbjct: 470 AGQPLEARKLYYKMVNDGCAPTAQTFNIVIHGLGEHKRWNDVNEMVEEMRSKGMFPNVVT 529

Query: 419 YNTLIKAYVKAKI--NDPNLLRRMILGGARPDAETYSLL 455
           Y TL+  Y +A++  +    L+ M   G  P    YS L
Sbjct: 530 YTTLVDVYAQARLFQDAVECLQTMKEDGMGPSPTAYSAL 568


>gi|115461420|ref|NP_001054310.1| Os04g0684500 [Oryza sativa Japonica Group]
 gi|113565881|dbj|BAF16224.1| Os04g0684500 [Oryza sativa Japonica Group]
          Length = 901

 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 68/309 (22%), Positives = 132/309 (42%), Gaps = 18/309 (5%)

Query: 127 SISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMK 186
           S++ ++++ +I  +   G  +    ++R+M+ D +   +  +H +M       N    + 
Sbjct: 366 SLNGIIYSNIIHAHCQSGNMERAEELVREMEEDGIDAPIDVYHSMMHGYTIIQNENKCLV 425

Query: 187 VYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYG 246
           V+  +K    +P+ +SY  L   +        A +  + +E     +N  T  +LI  + 
Sbjct: 426 VFERLKECGFKPSIISYGCLLNLYVKIGKVAKALSISKEMESCGIKHNNKTYSMLINGFI 485

Query: 247 YLAKGKDLERIWATVQELPNVRS------KSYVLAIEAFGRIAQVSRAEELWLEMQSVKQ 300
           +L    D    +A  +E+  +RS        Y L IEAF ++  + RA  +  +MQ  + 
Sbjct: 486 HL---HDFANAFAIFEEM--LRSGLQPDRAIYNLLIEAFCKMGNMDRAICILEKMQKERM 540

Query: 301 LKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFK 360
             +   +  +I  Y   G +  A   L  M  +GC P  +TY  L  G  + + V+    
Sbjct: 541 QPSNRAFRPIIEGYAVAGDMKSALDTLDLMRRSGCVPTVMTYNALIHGLVRKHKVQRAVS 600

Query: 361 ALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYN 420
            L+          +   TP   T   I+  +A  GD+G A   F ++K++      ++Y 
Sbjct: 601 VLD-------KMSIAGITPNEHTYTIIMRGYAASGDIGKAFEYFTKIKESGLKLDVYIYE 653

Query: 421 TLIKAYVKA 429
           TL++A  K+
Sbjct: 654 TLLRACCKS 662



 Score = 68.9 bits (167), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 74/298 (24%), Positives = 125/298 (41%), Gaps = 12/298 (4%)

Query: 94  NELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNIL 153
           +  +YN L+ A    G +  ++  ++KM+      S   F  +I   +  G  K+  + L
Sbjct: 508 DRAIYNLLIEAFCKMGNMDRAICILEKMQKERMQPSNRAFRPIIEGYAVAGDMKSALDTL 567

Query: 154 RQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVA 213
             M+     P V T++ L+      H ++  + V   M  + + PNE +Y I+   +A +
Sbjct: 568 DLMRRSGCVPTVMTYNALIHGLVRKHKVQRAVSVLDKMSIAGITPNEHTYTIIMRGYAAS 627

Query: 214 RLYTVAETYVEALEKSMTGNNWSTLDVLI--ILYGYLAKGKDLERIWATVQELPNVRSKS 271
                A  Y   +++S        LDV I   L     K   ++   A  +E+   +   
Sbjct: 628 GDIGKAFEYFTKIKESGL-----KLDVYIYETLLRACCKSGRMQSALAVTREMSFQKIPR 682

Query: 272 ----YVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLL 327
               Y + I+ + R   V  AE+L  +M+          Y S I+  CK G + +A  ++
Sbjct: 683 NTFIYNILIDGWARRGDVWEAEDLMKQMKEDGVPPNIHTYTSYINACCKAGDMQRAEKVI 742

Query: 328 KEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTL 385
           +EM   G KPN  TY  L  G  + +L +   K  E  MKL   K   +S   L T+L
Sbjct: 743 EEMVDVGLKPNVKTYTTLIKGWARVSLPDRALKCFE-EMKLAGLKPDEASYHCLVTSL 799



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 95/437 (21%), Positives = 171/437 (39%), Gaps = 55/437 (12%)

Query: 28  EIFHSINRLRKLQLNKRALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQGEKLFCC 87
           +++HS+     +  N+    V+   ++E  ++P  + Y  LL   +K   +++       
Sbjct: 405 DVYHSMMHGYTIIQNENKCLVVFERLKECGFKPSIISYGCLLNLYVKIGKVAKA----LS 460

Query: 88  IPKDYQN-ELLYNNLVIACLDKGVIKL-----SLEYMKKMRVLGHSISYLVFNRLIILNS 141
           I K+ ++  + +NN   + L  G I L     +    ++M   G      ++N LI    
Sbjct: 461 ISKEMESCGIKHNNKTYSMLINGFIHLHDFANAFAIFEEMLRSGLQPDRAIYNLLIEAFC 520

Query: 142 SPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEV 201
             G       IL +M+ +++ P    F  +++  A   +++  +     M+RS   P  +
Sbjct: 521 KMGNMDRAICILEKMQKERMQPSNRAFRPIIEGYAVAGDMKSALDTLDLMRRSGCVPTVM 580

Query: 202 SYCILATAHAVARLYTVAETYVEALEK-SMTGNNWSTLDVLIILYGYLAKGKDLERIWAT 260
           +Y  L   H + R + V +  V  L+K S+ G   +     II+ GY A G D+ +    
Sbjct: 581 TYNALI--HGLVRKHKV-QRAVSVLDKMSIAGITPNEHTYTIIMRGYAASG-DIGK---- 632

Query: 261 VQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFI 320
                         A E F +I +     ++++             Y +++   CK+G +
Sbjct: 633 --------------AFEYFTKIKESGLKLDVYI-------------YETLLRACCKSGRM 665

Query: 321 DKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPW 380
             A  + +EMS      N   Y  L  G  +   V E          L+   K     P 
Sbjct: 666 QSALAVTREMSFQKIPRNTFIYNILIDGWARRGDVWEA-------EDLMKQMKEDGVPPN 718

Query: 381 LETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKINDPNL--LR 438
           + T  S I    + GD+  AE + EE+           Y TLIK + +  + D  L    
Sbjct: 719 IHTYTSYINACCKAGDMQRAEKVIEEMVDVGLKPNVKTYTTLIKGWARVSLPDRALKCFE 778

Query: 439 RMILGGARPDAETYSLL 455
            M L G +PD  +Y  L
Sbjct: 779 EMKLAGLKPDEASYHCL 795



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 77/366 (21%), Positives = 141/366 (38%), Gaps = 55/366 (15%)

Query: 133 FNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMK 192
           F  +I+  +  G +         M+A  + P+   F  L+   A   ++ G +    +MK
Sbjct: 267 FGLMIVYYAKRGDKHHARATFENMRARGIEPNAFVFTSLVHAYAVARDMRGALSCVEEMK 326

Query: 193 RSEVEPNEVSYCILATAHA-------VARLYTVAETYVEALE----------KSMTGN-- 233
              +E   V+Y IL +  A          L+  A+T + +L              +GN  
Sbjct: 327 SEGLELTIVTYSILISGFAKINDSQSADNLFKEAKTKLSSLNGIIYSNIIHAHCQSGNME 386

Query: 234 ---------NWSTLDVLIILYGYLAKG----KDLERIWATVQELPNVRSK----SYVLAI 276
                        +D  I +Y  +  G    ++  +     + L     K    SY   +
Sbjct: 387 RAEELVREMEEDGIDAPIDVYHSMMHGYTIIQNENKCLVVFERLKECGFKPSIISYGCLL 446

Query: 277 EAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFID-----KASGLLKEMS 331
             + +I +V++A  +  EM+S       + Y+ +I     NGFI       A  + +EM 
Sbjct: 447 NLYVKIGKVAKALSISKEMESCGIKHNNKTYSMLI-----NGFIHLHDFANAFAIFEEML 501

Query: 332 MNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIF 391
            +G +P+   Y  L     K   ++     LE   K       R+  P       IIE +
Sbjct: 502 RSGLQPDRAIYNLLIEAFCKMGNMDRAICILEKMQKERMQPSNRAFRP-------IIEGY 554

Query: 392 AEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYV-KAKINDP-NLLRRMILGGARPDA 449
           A  GD+ +A +  + ++++        YN LI   V K K+    ++L +M + G  P+ 
Sbjct: 555 AVAGDMKSALDTLDLMRRSGCVPTVMTYNALIHGLVRKHKVQRAVSVLDKMSIAGITPNE 614

Query: 450 ETYSLL 455
            TY+++
Sbjct: 615 HTYTII 620



 Score = 38.9 bits (89), Expect = 5.9,   Method: Compositional matrix adjust.
 Identities = 31/128 (24%), Positives = 59/128 (46%), Gaps = 3/128 (2%)

Query: 82  EKLFCCIPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNS 141
           E  F  IP+   N  +YN L+     +G +  + + MK+M+  G   +   +   I    
Sbjct: 674 EMSFQKIPR---NTFIYNILIDGWARRGDVWEAEDLMKQMKEDGVPPNIHTYTSYINACC 730

Query: 142 SPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEV 201
             G  +    ++ +M    + P+V T+  L+K  A     +  +K + +MK + ++P+E 
Sbjct: 731 KAGDMQRAEKVIEEMVDVGLKPNVKTYTTLIKGWARVSLPDRALKCFEEMKLAGLKPDEA 790

Query: 202 SYCILATA 209
           SY  L T+
Sbjct: 791 SYHCLVTS 798


>gi|125548468|gb|EAY94290.1| hypothetical protein OsI_16061 [Oryza sativa Indica Group]
          Length = 586

 Score = 76.3 bits (186), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 71/269 (26%), Positives = 125/269 (46%), Gaps = 16/269 (5%)

Query: 98  YNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMK 157
           +N ++      G ++ +LE +++M   G S   +  N ++              +LR+++
Sbjct: 257 FNVVIKGVCRVGQVQKALELVERMNEFGCSPDTVTHNIIVDGLCRTNEVSRGHEVLRRLQ 316

Query: 158 ADKVA-PHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHA-VARL 215
            D V  P+V TF  ++        +E  M VY+DM  S + PN V+Y +L   +  V  L
Sbjct: 317 RDGVCMPNVVTFTSVISGYCKAGKLEDAMAVYNDMVASGIMPNTVTYNVLINGYGKVGDL 376

Query: 216 YTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQE---LPNVRSKSY 272
            +  E Y + + +     +  T   LI  Y    +  D  RIW+ + +    PNV + S 
Sbjct: 377 GSAVEVY-QQMTRLRCPPDVVTFSSLIDGYCRCGQLDDALRIWSDMAQHRIQPNVYTFSI 435

Query: 273 VLAIEAFGRIAQVSRAEE--LWLEMQSVKQLKATEQ--YNSVISVYCKNGFIDKASGLLK 328
           ++       + + +R++E    L   +++   A +   YN VI V CK G +D+A+ + K
Sbjct: 436 IIH-----SLCKQNRSDEAICLLNELNLRPDIAPQAFIYNPVIDVLCKCGKVDEANLIRK 490

Query: 329 EMSMNGCKPNAITYRHLALG-CFKSNLVE 356
            M   GC+P+  TY  L +G C KS + E
Sbjct: 491 GMEEKGCRPDKYTYTILIIGYCMKSRISE 519



 Score = 63.9 bits (154), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 72/362 (19%), Positives = 153/362 (42%), Gaps = 23/362 (6%)

Query: 101 LVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADK 160
           LV +C    ++  S   + K    G  +    +N+L+      GR   +  +  +   D+
Sbjct: 189 LVSSCTCANLLDASATLLSKASEFGCRVEAYAYNKLMSSLIGRGRVHDVVALFERWIQDR 248

Query: 161 V-APHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVA 219
           V +P V +F++++K       ++  +++   M      P+ V++ I+          +  
Sbjct: 249 VYSPDVWSFNVVIKGVCRVGQVQKALELVERMNEFGCSPDTVTHNIIVDGLCRTNEVSRG 308

Query: 220 ETYVEALEKS-MTGNNWSTLDVLIILYGYLAKGKDLERIWATVQEL------PNVRSKSY 272
              +  L++  +   N  T   +I   GY   GK LE   A   ++      PN  + +Y
Sbjct: 309 HEVLRRLQRDGVCMPNVVTFTSVI--SGYCKAGK-LEDAMAVYNDMVASGIMPN--TVTY 363

Query: 273 VLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSM 332
            + I  +G++  +  A E++ +M  ++       ++S+I  YC+ G +D A  +  +M+ 
Sbjct: 364 NVLINGYGKVGDLGSAVEVYQQMTRLRCPPDVVTFSSLIDGYCRCGQLDDALRIWSDMAQ 423

Query: 333 NGCKPNAITYRHLALGCFKSNLVEEGFKAL-ELGMKLITTKKVRSSTPWLETTLSIIEIF 391
           +  +PN  T+  +     K N  +E    L EL ++     +     P       +I++ 
Sbjct: 424 HRIQPNVYTFSIIIHSLCKQNRSDEAICLLNELNLRPDIAPQAFIYNP-------VIDVL 476

Query: 392 AEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAY-VKAKINDPNL-LRRMILGGARPDA 449
            + G V  A  + + +++       + Y  LI  Y +K++I++  +    M+  G  PD+
Sbjct: 477 CKCGKVDEANLIRKGMEEKGCRPDKYTYTILIIGYCMKSRISEAIMFFHEMVEAGCSPDS 536

Query: 450 ET 451
            T
Sbjct: 537 IT 538



 Score = 46.2 bits (108), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 61/329 (18%), Positives = 130/329 (39%), Gaps = 60/329 (18%)

Query: 43  KRALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQGEKLF-------CCIPKDYQNE 95
           ++ALE++E  + E    P  + ++ +++   + + +S+G ++         C+P    N 
Sbjct: 271 QKALELVER-MNEFGCSPDTVTHNIIVDGLCRTNEVSRGHEVLRRLQRDGVCMP----NV 325

Query: 96  LLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQ 155
           + + +++      G ++ ++     M   G   + + +N LI      G   +   + +Q
Sbjct: 326 VTFTSVISGYCKAGKLEDAMAVYNDMVASGIMPNTVTYNVLINGYGKVGDLGSAVEVYQQ 385

Query: 156 MKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARL 215
           M   +  P V TF  L+        ++  ++++SDM +  ++PN               +
Sbjct: 386 MTRLRCPPDVVTFSSLIDGYCRCGQLDDALRIWSDMAQHRIQPN---------------V 430

Query: 216 YTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQEL---PNVRSKSY 272
           YT +                      II++    + +  E I   + EL   P++  +++
Sbjct: 431 YTFS----------------------IIIHSLCKQNRSDEAI-CLLNELNLRPDIAPQAF 467

Query: 273 VL--AIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEM 330
           +    I+   +  +V  A  +   M+          Y  +I  YC    I +A     EM
Sbjct: 468 IYNPVIDVLCKCGKVDEANLIRKGMEEKGCRPDKYTYTILIIGYCMKSRISEAIMFFHEM 527

Query: 331 SMNGCKPNAITYRHLALGCFKSNLVEEGF 359
              GC P++IT     + CF S L++ G 
Sbjct: 528 VEAGCSPDSIT-----VNCFISCLLKAGM 551


>gi|449448914|ref|XP_004142210.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53700,
           chloroplastic-like [Cucumis sativus]
 gi|449525343|ref|XP_004169677.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53700,
           chloroplastic-like [Cucumis sativus]
          Length = 768

 Score = 76.3 bits (186), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 83/338 (24%), Positives = 146/338 (43%), Gaps = 34/338 (10%)

Query: 133 FNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMK 192
           +N L+ +     + K + +    M   ++   VSTF+IL+K     H +   + +  +M 
Sbjct: 171 YNVLLNVLVDANKLKLVESAHSSMVRRRIRHDVSTFNILIKALCKAHQVRPAILMMEEMP 230

Query: 193 RSEVEPNEVSYCILATAHAVARLYTVAETYVEA--------LEKSMT--GNNWSTLDVLI 242
              + P+E ++             T+ + Y+E         +++ M   G   + + V +
Sbjct: 231 SYGLSPDETTF------------TTIMQGYIEGGNLDGALRIKEQMVEYGCPCTDVTVNV 278

Query: 243 ILYGYLAKGK---DLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVK 299
           ++ G+  +G+    L  I   V E       +Y   +    +I     A E+   M    
Sbjct: 279 LINGFCKQGRIDQALSFIQEAVSEGFRPDQFTYNTLVNGLCKIGHAKHAMEVVDAMLLGG 338

Query: 300 QLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGF 359
                  YNS+IS  CK G I++A  +L +M    C PNA+TY  +     K N V+E  
Sbjct: 339 LDPDIYTYNSLISGLCKLGEIEEAVKILDQMVSRDCSPNAVTYNAIISSLCKENRVDE-- 396

Query: 360 KALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVY 419
            A E+  +L+T+K +    P + T  S+I+      +  +A +LFEE+K        F Y
Sbjct: 397 -ATEIA-RLLTSKGI---LPDVCTFNSLIQGLCLSSNHKSAMDLFEEMKGKGCRPDEFTY 451

Query: 420 NTLIKAYVKA-KINDP-NLLRRMILGGARPDAETYSLL 455
           N LI +   + K+ +  NLL+ M L G   +   Y+ L
Sbjct: 452 NMLIDSLCSSRKLEEALNLLKEMELNGCARNVVIYNTL 489



 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 64/263 (24%), Positives = 125/263 (47%), Gaps = 7/263 (2%)

Query: 98  YNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMK 157
           YN+L+      G I+ +++ + +M     S + + +N +I       R      I R + 
Sbjct: 346 YNSLISGLCKLGEIEEAVKILDQMVSRDCSPNAVTYNAIISSLCKENRVDEATEIARLLT 405

Query: 158 ADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYT 217
           +  + P V TF+ L++      N +  M ++ +MK     P+E +Y +L  +   +R   
Sbjct: 406 SKGILPDVCTFNSLIQGLCLSSNHKSAMDLFEEMKGKGCRPDEFTYNMLIDSLCSSRKLE 465

Query: 218 VAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVR--SKSYVLA 275
            A   ++ +E +    N    + LI  +    + ++ E I+  + EL  V   S +Y   
Sbjct: 466 EALNLLKEMELNGCARNVVIYNTLIDGFCKNKRIEEAEEIFDEM-ELQGVSRDSVTYNTL 524

Query: 276 IEAFGRIAQVSRAEELWLEM--QSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMN 333
           I+   +  +V  A +L  +M  + ++  K T  YNS+++ +CK G I KA+ +++ M+ +
Sbjct: 525 IDGLCKSKRVEDAAQLMDQMIMEGLRPDKFT--YNSLLTHFCKTGDIKKAADIVQTMTSS 582

Query: 334 GCKPNAITYRHLALGCFKSNLVE 356
           GC P+ +TY  L  G  K+  V+
Sbjct: 583 GCNPDIVTYATLISGLCKAGRVQ 605



 Score = 65.9 bits (159), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 83/393 (21%), Positives = 164/393 (41%), Gaps = 37/393 (9%)

Query: 97  LYNNLVIACLDKGVIKLSLEYMKKM--RVLGHSISYLVFNRLIILNSSPGRRKTIPNILR 154
            YN L+   +D   +KL       M  R + H +S   FN LI       + +    ++ 
Sbjct: 170 FYNVLLNVLVDANKLKLVESAHSSMVRRRIRHDVS--TFNILIKALCKAHQVRPAILMME 227

Query: 155 QMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVAR 214
           +M +  ++P  +TF  +M+      N++G +++   M        +V+  +L        
Sbjct: 228 EMPSYGLSPDETTFTTIMQGYIEGGNLDGALRIKEQMVEYGCPCTDVTVNVLINGFCKQG 287

Query: 215 LYTVAETYV-EALEKSMTGNNWSTLDVLIILYGYLAKGKD-LERIWATVQELPNVRSKSY 272
               A +++ EA+ +    + + T + L+     +   K  +E + A +    +    +Y
Sbjct: 288 RIDQALSFIQEAVSEGFRPDQF-TYNTLVNGLCKIGHAKHAMEVVDAMLLGGLDPDIYTY 346

Query: 273 VLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSM 332
              I    ++ ++  A ++  +M S         YN++IS  CK   +D+A+ + + ++ 
Sbjct: 347 NSLISGLCKLGEIEEAVKILDQMVSRDCSPNAVTYNAIISSLCKENRVDEATEIARLLTS 406

Query: 333 NGCKPNAITYRHLALG-CFKSN------LVEE---------------------GFKALEL 364
            G  P+  T+  L  G C  SN      L EE                       + LE 
Sbjct: 407 KGILPDVCTFNSLIQGLCLSSNHKSAMDLFEEMKGKGCRPDEFTYNMLIDSLCSSRKLEE 466

Query: 365 GMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIK 424
            + L+   ++      +    ++I+ F +   +  AE +F+E++    ++ +  YNTLI 
Sbjct: 467 ALNLLKEMELNGCARNVVIYNTLIDGFCKNKRIEEAEEIFDEMELQGVSRDSVTYNTLID 526

Query: 425 AYVKAK-IND-PNLLRRMILGGARPDAETYSLL 455
              K+K + D   L+ +MI+ G RPD  TY+ L
Sbjct: 527 GLCKSKRVEDAAQLMDQMIMEGLRPDKFTYNSL 559



 Score = 60.8 bits (146), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 72/355 (20%), Positives = 140/355 (39%), Gaps = 44/355 (12%)

Query: 94  NELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNIL 153
            ++  N L+     +G I  +L ++++    G       +N L+      G  K    ++
Sbjct: 272 TDVTVNVLINGFCKQGRIDQALSFIQEAVSEGFRPDQFTYNTLVNGLCKIGHAKHAMEVV 331

Query: 154 RQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSY-CILAT---- 208
             M    + P + T++ L+        IE  +K+   M   +  PN V+Y  I+++    
Sbjct: 332 DAMLLGGLDPDIYTYNSLISGLCKLGEIEEAVKILDQMVSRDCSPNAVTYNAIISSLCKE 391

Query: 209 -----AHAVARLYT---------VAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDL 254
                A  +ARL T            + ++ L   ++ N+ S +D+   + G   +  + 
Sbjct: 392 NRVDEATEIARLLTSKGILPDVCTFNSLIQGL--CLSSNHKSAMDLFEEMKGKGCRPDEF 449

Query: 255 ERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVY 314
                           +Y + I++     ++  A  L  EM+     +    YN++I  +
Sbjct: 450 ----------------TYNMLIDSLCSSRKLEEALNLLKEMELNGCARNVVIYNTLIDGF 493

Query: 315 CKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKV 374
           CKN  I++A  +  EM + G   +++TY  L  G  KS  VE+         +L+    +
Sbjct: 494 CKNKRIEEAEEIFDEMELQGVSRDSVTYNTLIDGLCKSKRVED-------AAQLMDQMIM 546

Query: 375 RSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKA 429
               P   T  S++  F + GD+  A ++ + +  +        Y TLI    KA
Sbjct: 547 EGLRPDKFTYNSLLTHFCKTGDIKKAADIVQTMTSSGCNPDIVTYATLISGLCKA 601



 Score = 59.3 bits (142), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 88/452 (19%), Positives = 166/452 (36%), Gaps = 89/452 (19%)

Query: 12  SAFQSWMREGFPVHRGEIFHSINRLRKLQLNKRALEVMEWVIRERPYRPKELDYSYLLEF 71
           S  Q  + EGF   +      +N L K+   K A+EV++ ++      P    Y+ L+  
Sbjct: 294 SFIQEAVSEGFRPDQFTYNTLVNGLCKIGHAKHAMEVVDAMLLG-GLDPDIYTYNSLISG 352

Query: 72  TIKNHGISQGEKLFC------CIPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLG 125
             K   I +  K+        C P    N + YN ++ +   +  +  + E         
Sbjct: 353 LCKLGEIEEAVKILDQMVSRDCSP----NAVTYNAIISSLCKENRVDEATE--------- 399

Query: 126 HSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLM 185
                                     I R + +  + P V TF+ L++      N +  M
Sbjct: 400 --------------------------IARLLTSKGILPDVCTFNSLIQGLCLSSNHKSAM 433

Query: 186 KVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILY 245
            ++ +MK     P+E +Y +L  +   +R    A   ++ +E +    N       +++Y
Sbjct: 434 DLFEEMKGKGCRPDEFTYNMLIDSLCSSRKLEEALNLLKEMELNGCARN-------VVIY 486

Query: 246 GYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATE 305
             L                           I+ F +  ++  AEE++ EM+     + + 
Sbjct: 487 NTL---------------------------IDGFCKNKRIEEAEEIFDEMELQGVSRDSV 519

Query: 306 QYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELG 365
            YN++I   CK+  ++ A+ L+ +M M G +P+  TY  L     K+  +++        
Sbjct: 520 TYNTLIDGLCKSKRVEDAAQLMDQMIMEGLRPDKFTYNSLLTHFCKTGDIKK-------A 572

Query: 366 MKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKA 425
             ++ T       P + T  ++I    + G V  A  L   ++          YN +I+A
Sbjct: 573 ADIVQTMTSSGCNPDIVTYATLISGLCKAGRVQVASRLLRSIQMKGMVLTPHAYNPVIQA 632

Query: 426 YVKAKINDP--NLLRRMILGGARPDAETYSLL 455
             K         L R M+     PDA TY ++
Sbjct: 633 LFKRNRTHEAMRLFREMLDKSEPPDAITYKIV 664


>gi|356517404|ref|XP_003527377.1| PREDICTED: pentatricopeptide repeat-containing protein At5g42310,
           mitochondrial-like [Glycine max]
          Length = 696

 Score = 76.3 bits (186), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 94/421 (22%), Positives = 188/421 (44%), Gaps = 33/421 (7%)

Query: 43  KRALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQG--EKLFCCIPKDYQ--NELLY 98
           ++AL +M  + R+  Y+P  ++YS ++++  +++ I     +KL+  I  D    +  L 
Sbjct: 202 EKALNLMSKMRRDG-YQPDFVNYSSIIQYLTRSNKIDSPILQKLYTEIETDKIEIDGHLM 260

Query: 99  NNLVIACLDKGVIKLSLEY--MKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQM 156
           N++++     G    ++ +  M +   L    S LV   L + NS  GR      +  ++
Sbjct: 261 NDIILGFSKAGDPTRAMRFLAMAQSNGLNPKPSTLVAVILALGNS--GRTHEAEALFEEI 318

Query: 157 KADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLY 216
           + +   P    ++ L+K      +++    V S+M+++ V+P+E +Y +L  A+A A  +
Sbjct: 319 RENGSEPRTRAYNALLKGYVKTGSLKDAEFVVSEMEKAGVKPDEQTYSLLIDAYAHAGRW 378

Query: 217 TVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWA-TVQELPNVRSKS---- 271
             A   ++ +E S    N        IL  Y  KG+     W  + Q L +++S      
Sbjct: 379 ESARIVLKEMEASNVEPNSYVYSR--ILASYRDKGE-----WQKSFQVLKDMKSNGVQPD 431

Query: 272 ---YVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLK 328
              Y + I+ FG+   +  A   +  M S      T  +N++I+ +CK+G  + A  L  
Sbjct: 432 RHFYNVMIDTFGKYNCLDHAMATFERMLSEGIRPDTVTWNTLINCHCKSGRHNMAEELFG 491

Query: 329 EMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSII 388
           EM   G  P   TY  +      S   ++ ++ + L +  + ++ +    P   T  +++
Sbjct: 492 EMQQRGYSPCITTYNIM----INSMGEQQRWEQVSLFLSKMQSQGL---LPNSITYTTLV 544

Query: 389 EIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKIND--PNLLRRMILGGAR 446
           +++ + G   +A    E LK   +   + +YN LI AY +  +++   N  R M   G  
Sbjct: 545 DVYGKSGRFSDAIECLEVLKSTGFKPTSTMYNALINAYAQRGLSELAVNAFRLMTTEGLT 604

Query: 447 P 447
           P
Sbjct: 605 P 605



 Score = 66.2 bits (160), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 81/419 (19%), Positives = 171/419 (40%), Gaps = 51/419 (12%)

Query: 53  IRERPYRPKELDYSYLLEFTIKNHGISQGEKLFCCIPKD--YQNELLYNNLVIACLDKGV 110
           IRE    P+   Y+ LL+  +K   +   E +   + K     +E  Y+ L+ A    G 
Sbjct: 318 IRENGSEPRTRAYNALLKGYVKTGSLKDAEFVVSEMEKAGVKPDEQTYSLLIDAYAHAGR 377

Query: 111 IKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHI 170
            + +   +K+M       +  V++R++      G  +    +L+ MK++ V P    +++
Sbjct: 378 WESARIVLKEMEASNVEPNSYVYSRILASYRDKGEWQKSFQVLKDMKSNGVQPDRHFYNV 437

Query: 171 LMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSM 230
           ++      + ++  M  +  M    + P+ V++  L   H  +  + +AE     +++  
Sbjct: 438 MIDTFGKYNCLDHAMATFERMLSEGIRPDTVTWNTLINCHCKSGRHNMAEELFGEMQQRG 497

Query: 231 TGNNWSTLDVLIILYGYLAKGKDLERIWATVQE---LPNVRSKSYVLAIEAFGRIAQVSR 287
                +T +++I   G   + + +    + +Q    LPN  S +Y   ++ +G+  + S 
Sbjct: 498 YSPCITTYNIMINSMGEQQRWEQVSLFLSKMQSQGLLPN--SITYTTLVDVYGKSGRFSD 555

Query: 288 AEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLAL 347
           A E    ++S      +  YN++I+ Y + G        L E+++N              
Sbjct: 556 AIECLEVLKSTGFKPTSTMYNALINAYAQRG--------LSELAVN-------------- 593

Query: 348 GCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEEL 407
                              +L+TT+ +   TP L    S+I  F E      A  + + +
Sbjct: 594 -----------------AFRLMTTEGL---TPSLLALNSLINAFGEDRRDAEAFAVLQYM 633

Query: 408 KKANYTKYTFVYNTLIKAYVKAKIND--PNLLRRMILGGARPDAETYSLLKLAEQFQKK 464
           K+ N       Y TL+KA ++ +     P +   M+  G  PD +  ++L+ A ++ K+
Sbjct: 634 KENNIEPDVVTYTTLMKALIRVEKFQKVPAVYEEMVTSGCTPDRKARAMLRSALRYMKQ 692



 Score = 62.8 bits (151), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 56/216 (25%), Positives = 92/216 (42%), Gaps = 37/216 (17%)

Query: 272 YVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMS 331
           Y + I A GR  ++  A  L     S +Q+     YN++I    +NG ++KA  L+ +M 
Sbjct: 158 YSILINALGRSEKLYEAFLL-----SQRQVLTPLTYNALIGACARNGDVEKALNLMSKMR 212

Query: 332 MNGCKPNAITYRHLALGCFKSNLVEE---------------------------GF-KALE 363
            +G +P+ + Y  +     +SN ++                            GF KA +
Sbjct: 213 RDGYQPDFVNYSSIIQYLTRSNKIDSPILQKLYTEIETDKIEIDGHLMNDIILGFSKAGD 272

Query: 364 L--GMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNT 421
               M+ +   +     P   T +++I      G    AE LFEE+++      T  YN 
Sbjct: 273 PTRAMRFLAMAQSNGLNPKPSTLVAVILALGNSGRTHEAEALFEEIRENGSEPRTRAYNA 332

Query: 422 LIKAYVK-AKINDPN-LLRRMILGGARPDAETYSLL 455
           L+K YVK   + D   ++  M   G +PD +TYSLL
Sbjct: 333 LLKGYVKTGSLKDAEFVVSEMEKAGVKPDEQTYSLL 368



 Score = 55.1 bits (131), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 68/305 (22%), Positives = 123/305 (40%), Gaps = 34/305 (11%)

Query: 167 TFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILA---------TAHAVARLYT 217
           T++ L+   A + ++E  + + S M+R   +P+ V+Y  +           +  + +LYT
Sbjct: 187 TYNALIGACARNGDVEKALNLMSKMRRDGYQPDFVNYSSIIQYLTRSNKIDSPILQKLYT 246

Query: 218 VAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLE--RIWATVQELP-NVRSKSYVL 274
             ET    ++  +  +         I+ G+   G      R  A  Q    N +  + V 
Sbjct: 247 EIETDKIEIDGHLMND---------IILGFSKAGDPTRAMRFLAMAQSNGLNPKPSTLVA 297

Query: 275 AIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNG 334
            I A G   +   AE L+ E++       T  YN+++  Y K G +  A  ++ EM   G
Sbjct: 298 VILALGNSGRTHEAEALFEEIRENGSEPRTRAYNALLKGYVKTGSLKDAEFVVSEMEKAG 357

Query: 335 CKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSST--PWLETTLSIIEIFA 392
            KP+  TY         S L++    A       I  K++ +S   P       I+  + 
Sbjct: 358 VKPDEQTY---------SLLIDAYAHAGRWESARIVLKEMEASNVEPNSYVYSRILASYR 408

Query: 393 EKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKINDPNL--LRRMILGGARPDAE 450
           +KG+   +  + +++K          YN +I  + K    D  +    RM+  G RPD  
Sbjct: 409 DKGEWQKSFQVLKDMKSNGVQPDRHFYNVMIDTFGKYNCLDHAMATFERMLSEGIRPDTV 468

Query: 451 TYSLL 455
           T++ L
Sbjct: 469 TWNTL 473


>gi|356499327|ref|XP_003518493.1| PREDICTED: pentatricopeptide repeat-containing protein At5g64320,
           mitochondrial-like [Glycine max]
          Length = 725

 Score = 76.3 bits (186), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 99/436 (22%), Positives = 173/436 (39%), Gaps = 25/436 (5%)

Query: 28  EIFHSINRLRKLQLNKRALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQGEKLFCC 87
           ++ H + R  ++    + L+ M      R +    L Y YL+    +   + +   L   
Sbjct: 280 DVIHGLCRAGRIHEAAKLLDRMLL----RGFSTDALTYGYLMHGLCRMGQVDEARALLNK 335

Query: 88  IPKDYQNELLYNNLVIACLDKGVIKLSLEYM-KKMRVLGHSISYLVFNRLIILNSSPGRR 146
           IP    N +LYN L+   +  G  + + + +   M + G+      FN +I      G  
Sbjct: 336 IPN--PNTVLYNTLISGYVASGRFEEAKDLLYNNMVIAGYEPDAYTFNIMIDGLVKKGYL 393

Query: 147 KTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSY-CI 205
            +   +L +M A +  P+V T+ IL+        +E   ++ + M    +  N V Y C+
Sbjct: 394 VSALELLNEMVAKRFEPNVITYTILINGFCKQGRLEEAAEIVNSMSAKGLSLNTVGYNCL 453

Query: 206 LATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQEL- 264
           +        +    + + E   K    + + T + LI     L K   +E   +   ++ 
Sbjct: 454 ICALCKDGNIEEALQLFGEMSGKGCKPDIY-TFNSLI---NGLCKNHKMEEALSLYHDMF 509

Query: 265 ---PNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFID 321
                  + +Y   + AF     + +A +L  EM           YN +I   CK G ++
Sbjct: 510 LEGVIANTVTYNTLVHAFLMRDSIQQAFKLVDEMLFRGCPLDNITYNGLIKALCKTGAVE 569

Query: 322 KASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWL 381
           K  GL +EM   G  P  I+   L  G  ++  V +  K L+  +        R  TP +
Sbjct: 570 KGLGLFEEMLGKGIFPTIISCNILISGLCRTGKVNDALKFLQDMIH-------RGLTPDI 622

Query: 382 ETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYV-KAKINDPN-LLRR 439
            T  S+I    + G V  A NLF +L+          YNTLI  +  +   ND   LL +
Sbjct: 623 VTYNSLINGLCKMGHVQEASNLFNKLQSEGIRPDAITYNTLISRHCHEGMFNDACLLLYK 682

Query: 440 MILGGARPDAETYSLL 455
            +  G  P+  T+S+L
Sbjct: 683 GVDSGFIPNEVTWSIL 698



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 94/410 (22%), Positives = 158/410 (38%), Gaps = 58/410 (14%)

Query: 87  CIPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRR 146
           C+P    N ++Y  L+ A  +   +  +L+ ++ M ++        FN +I      GR 
Sbjct: 236 CVP----NSVIYQTLIHALCENNRVSEALQLLEDMFLMCCEPDVQTFNDVIHGLCRAGRI 291

Query: 147 KTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVE----PNEVS 202
                +L +M     +    T+  LM      H +  + +V  D  R+ +     PN V 
Sbjct: 292 HEAAKLLDRMLLRGFSTDALTYGYLM------HGLCRMGQV--DEARALLNKIPNPNTVL 343

Query: 203 YCILATAHAVARLYTVAETYVEALEKSMTGNNWS----TLDVLI---ILYGYLAKGKDLE 255
           Y  L + +  +  +  A+   + L  +M    +     T +++I   +  GYL    +L 
Sbjct: 344 YNTLISGYVASGRFEEAK---DLLYNNMVIAGYEPDAYTFNIMIDGLVKKGYLVSALELL 400

Query: 256 RIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYC 315
                 +  PNV   +Y + I  F +  ++  A E+   M +      T  YN +I   C
Sbjct: 401 NEMVAKRFEPNV--ITYTILINGFCKQGRLEEAAEIVNSMSAKGLSLNTVGYNCLICALC 458

Query: 316 KNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFK--------------- 360
           K+G I++A  L  EMS  GCKP+  T+  L  G  K++ +EE                  
Sbjct: 459 KDGNIEEALQLFGEMSGKGCKPDIYTFNSLINGLCKNHKMEEALSLYHDMFLEGVIANTV 518

Query: 361 -------------ALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEEL 407
                        +++   KL+     R       T   +I+   + G V     LFEE+
Sbjct: 519 TYNTLVHAFLMRDSIQQAFKLVDEMLFRGCPLDNITYNGLIKALCKTGAVEKGLGLFEEM 578

Query: 408 KKANYTKYTFVYNTLIKAYVK-AKINDP-NLLRRMILGGARPDAETYSLL 455
                       N LI    +  K+ND    L+ MI  G  PD  TY+ L
Sbjct: 579 LGKGIFPTIISCNILISGLCRTGKVNDALKFLQDMIHRGLTPDIVTYNSL 628



 Score = 62.8 bits (151), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 79/344 (22%), Positives = 141/344 (40%), Gaps = 29/344 (8%)

Query: 58  YRPKELDYSYLLEFTIK-NHGISQGEKLFCCIPKDYQ-NELLYNNLVIACLDKGVIKLSL 115
           Y P    ++ +++  +K  + +S  E L   + K ++ N + Y  L+     +G ++ + 
Sbjct: 373 YEPDAYTFNIMIDGLVKKGYLVSALELLNEMVAKRFEPNVITYTILINGFCKQGRLEEAA 432

Query: 116 EYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIE 175
           E +  M   G S++ + +N LI      G  +    +  +M      P + TF+ L+   
Sbjct: 433 EIVNSMSAKGLSLNTVGYNCLICALCKDGNIEEALQLFGEMSGKGCKPDIYTFNSLINGL 492

Query: 176 ANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNW 235
             +H +E  + +Y DM    V  N V+Y  L   HA     ++ + +    E    G   
Sbjct: 493 CKNHKMEEALSLYHDMFLEGVIANTVTYNTLV--HAFLMRDSIQQAFKLVDEMLFRG--- 547

Query: 236 STLDVLII--LYGYLAKGKDLERIWATVQEL------PNVRSKSYVLAIEAFGRIAQVSR 287
             LD +    L   L K   +E+     +E+      P + S +  + I    R  +V+ 
Sbjct: 548 CPLDNITYNGLIKALCKTGAVEKGLGLFEEMLGKGIFPTIISCN--ILISGLCRTGKVND 605

Query: 288 AEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITY----- 342
           A +   +M           YNS+I+  CK G + +AS L  ++   G +P+AITY     
Sbjct: 606 ALKFLQDMIHRGLTPDIVTYNSLINGLCKMGHVQEASNLFNKLQSEGIRPDAITYNTLIS 665

Query: 343 RHLALGCFKSNL------VEEGFKALELGMKLITTKKVRSSTPW 380
           RH   G F          V+ GF   E+   ++    V+   PW
Sbjct: 666 RHCHEGMFNDACLLLYKGVDSGFIPNEVTWSILINYIVK-KIPW 708



 Score = 55.5 bits (132), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 54/233 (23%), Positives = 90/233 (38%), Gaps = 37/233 (15%)

Query: 254 LERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISV 313
           L  +W      P  +S + VL I   G   +V  A  ++ +M S         +  V+  
Sbjct: 157 LLDMWGVYSCDPTFKSYNVVLDILVDGDCPRV--APNVFYDMLSRGVSPTVYTFGVVMKA 214

Query: 314 YCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALEL--------- 364
            C    +D A  LL++M+ +GC PN++ Y+ L     ++N V E  + LE          
Sbjct: 215 LCMVSEVDSACSLLRDMAKHGCVPNSVIYQTLIHALCENNRVSEALQLLEDMFLMCCEPD 274

Query: 365 -------------------GMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFE 405
                                KL+    +R  +    T   ++      G V  A  L  
Sbjct: 275 VQTFNDVIHGLCRAGRIHEAAKLLDRMLLRGFSTDALTYGYLMHGLCRMGQVDEARALLN 334

Query: 406 ELKKANYTKYTFVYNTLIKAYVKAKINDPN---LLRRMILGGARPDAETYSLL 455
           ++   N    T +YNTLI  YV +   +     L   M++ G  PDA T++++
Sbjct: 335 KIPNPN----TVLYNTLISGYVASGRFEEAKDLLYNNMVIAGYEPDAYTFNIM 383


>gi|302757525|ref|XP_002962186.1| hypothetical protein SELMODRAFT_76934 [Selaginella moellendorffii]
 gi|300170845|gb|EFJ37446.1| hypothetical protein SELMODRAFT_76934 [Selaginella moellendorffii]
          Length = 855

 Score = 76.3 bits (186), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 66/307 (21%), Positives = 133/307 (43%), Gaps = 10/307 (3%)

Query: 152 ILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHA 211
           +  ++K    +P+V  +  ++        IE  +K + DM  S   P   +Y ++     
Sbjct: 385 LFEKLKTAGCSPNVVAYTAVIDGLLKAGRIEDGLKNFEDMSGSSCVPTRTTYTVVIDGLC 444

Query: 212 VARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIW-ATVQELPNVRSK 270
            A++   A    E + +     +  T   LI  +   +K  +  ++    + + P   + 
Sbjct: 445 KAQMLPDACKVFEQMVQKGCVPDTITYTTLIDGFSKASKMDEARKLLDVMLTKGPEPTAV 504

Query: 271 SYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEM 330
           +Y   +  F ++  ++ A+E+  +M+          + S++S Y   G  ++A  +L EM
Sbjct: 505 TYGSIVHGFCKLDMINEAKEVIAQMRERGCEPGLFIFTSLLSYYLSKGRAEEAYQVLTEM 564

Query: 331 SMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEI 390
           +  GC P+ I Y  L    F +  V E     +  ++       +   P   T  +II+ 
Sbjct: 565 TARGCAPDVILYTSLIDLLFSTGRVPEARHVFDSMIE-------KGCAPDALTYGTIIQN 617

Query: 391 FAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKINDP--NLLRRMILGGARPD 448
           F++ G+V  A  + E + K+      F YN+L+  YVK +  D    +  RM+  G +P+
Sbjct: 618 FSKIGNVEAAGEILELMAKSGVGPDCFAYNSLMDGYVKLERVDQAFGVYDRMVASGIKPN 677

Query: 449 AETYSLL 455
           A T+++L
Sbjct: 678 AVTFNVL 684



 Score = 65.1 bits (157), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 86/410 (20%), Positives = 160/410 (39%), Gaps = 36/410 (8%)

Query: 58  YRPKELDYSYLLEFTIKNHGISQGEKLF------CCIPKDYQNELLYNNLVIACLDKGVI 111
           +RP    Y+ ++    K   +  G K+        CIP    +   Y  L+      G +
Sbjct: 120 FRPDVFLYTSVIHGYCKAGDLDTGFKILEEMLAAGCIP----DAAAYFVLIDPLCKLGRV 175

Query: 112 KLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHIL 171
             + E  ++MR  G    Y+ F  LI   S+ G+      + R+M      P++     L
Sbjct: 176 DEAYELFERMRKSGCLGDYVTFMTLIEALSNHGKLDEACELYREMIERGYEPYLEVQDSL 235

Query: 172 MKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMT 231
           +        ++   ++Y  +   +V  + V+Y  L   +   +L  V +  ++ L + + 
Sbjct: 236 IFALCKAGKVDEANEIYQTVVAKKVATSRVAYNSLMDGYC--KLGRVDDG-LKLLLQMVE 292

Query: 232 GNNWSTLDVLIILYGYLAKGKDLE------RIWATVQELPNVRSKSYVLAIEAFGRIAQV 285
            +N+  +    IL    ++   L+      ++ ++    PN  + +Y   I+      ++
Sbjct: 293 CDNFPDIQTYNILVAGFSRANRLDDALELFKLLSSYGCKPN--AATYTTIIQGLYDAQRM 350

Query: 286 SRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHL 345
             A+  + E   V        Y +VI     +  ID+A  L +++   GC PN + Y  +
Sbjct: 351 EEAKAFFDEALDVIS------YTTVIKGLADSKRIDEACELFEKLKTAGCSPNVVAYTAV 404

Query: 346 ALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFE 405
             G  K+  +E+G K  E            S  P   T   +I+   +   + +A  +FE
Sbjct: 405 IDGLLKAGRIEDGLKNFE-------DMSGSSCVPTRTTYTVVIDGLCKAQMLPDACKVFE 457

Query: 406 ELKKANYTKYTFVYNTLIKAYVKAKINDP--NLLRRMILGGARPDAETYS 453
           ++ +      T  Y TLI  + KA   D    LL  M+  G  P A TY 
Sbjct: 458 QMVQKGCVPDTITYTTLIDGFSKASKMDEARKLLDVMLTKGPEPTAVTYG 507



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 70/312 (22%), Positives = 130/312 (41%), Gaps = 19/312 (6%)

Query: 151 NILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAH 210
           + L++M    + P V   +I++        I+  ++++ +M     EP  VSY  + +  
Sbjct: 6   DCLKEMHTTGLMPDVVNCNIVLNGLCKARKIDKAIELFLEMPSMGCEPTIVSYNTVIS-- 63

Query: 211 AVARLYTVAETYVEALEKSMTGNNWSTLDVL---IILYGYLAKGKDLERIWATVQELPNV 267
            +A +  + E Y      SM  N     DV+    +++G+   G+         Q L   
Sbjct: 64  GLASIDKMDEAY--KFFNSMIDNGCEP-DVIAFTTLIHGFCKAGQPQVGHMLLNQALKRF 120

Query: 268 RSKS--YVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASG 325
           R     Y   I  + +   +    ++  EM +   +     Y  +I   CK G +D+A  
Sbjct: 121 RPDVFLYTSVIHGYCKAGDLDTGFKILEEMLAAGCIPDAAAYFVLIDPLCKLGRVDEAYE 180

Query: 326 LLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTL 385
           L + M  +GC  + +T+  L         ++E   A EL  ++I     R   P+LE   
Sbjct: 181 LFERMRKSGCLGDYVTFMTLIEALSNHGKLDE---ACELYREMIE----RGYEPYLEVQD 233

Query: 386 SIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVK-AKINDP-NLLRRMILG 443
           S+I    + G V  A  +++ +           YN+L+  Y K  +++D   LL +M+  
Sbjct: 234 SLIFALCKAGKVDEANEIYQTVVAKKVATSRVAYNSLMDGYCKLGRVDDGLKLLLQMVEC 293

Query: 444 GARPDAETYSLL 455
              PD +TY++L
Sbjct: 294 DNFPDIQTYNIL 305



 Score = 62.4 bits (150), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 63/279 (22%), Positives = 118/279 (42%), Gaps = 12/279 (4%)

Query: 96  LLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQ 155
            ++ +L+   L KG  + + + + +M   G +   +++  LI L  S GR     ++   
Sbjct: 539 FIFTSLLSYYLSKGRAEEAYQVLTEMTARGCAPDVILYTSLIDLLFSTGRVPEARHVFDS 598

Query: 156 MKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARL 215
           M     AP   T+  +++  +   N+E   ++   M +S V P+  +Y  L   +     
Sbjct: 599 MIEKGCAPDALTYGTIIQNFSKIGNVEAAGEILELMAKSGVGPDCFAYNSLMDGYVKLER 658

Query: 216 YTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQEL-------PNVR 268
              A    + +  S    N  T +VL  ++G    GK  +R ++  +E+       P + 
Sbjct: 659 VDQAFGVYDRMVASGIKPNAVTFNVL--MHGLFKDGK-TDRAFSLFKEMLEKDEVPPTLV 715

Query: 269 SKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLK 328
           S  Y + I+  G+  +VS A   + EM     +     Y S+I    K G I +A  L++
Sbjct: 716 S--YTILIDGLGKAGRVSEAFSQFQEMIDRGIIPECHTYTSLIYSLAKAGRIPEAKKLVE 773

Query: 329 EMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMK 367
           +M   G  P+   Y  L  G   S++V+  +   +  MK
Sbjct: 774 DMVKLGVNPDVQAYSALITGLIDSSMVDTAWDVFQEMMK 812



 Score = 61.6 bits (148), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 72/338 (21%), Positives = 129/338 (38%), Gaps = 26/338 (7%)

Query: 24  VHRGEIFHSINRLRKLQLNKRALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQGEK 83
           V  G I H   +L  +   K  +  M    RER   P    ++ LL + +      +  +
Sbjct: 504 VTYGSIVHGFCKLDMINEAKEVIAQM----RERGCEPGLFIFTSLLSYYLSKGRAEEAYQ 559

Query: 84  LFC------CIPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLI 137
           +        C P    + +LY +L+      G +  +      M   G +   L +  +I
Sbjct: 560 VLTEMTARGCAP----DVILYTSLIDLLFSTGRVPEARHVFDSMIEKGCAPDALTYGTII 615

Query: 138 ILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVE 197
              S  G  +    IL  M    V P    ++ LM        ++    VY  M  S ++
Sbjct: 616 QNFSKIGNVEAAGEILELMAKSGVGPDCFAYNSLMDGYVKLERVDQAFGVYDRMVASGIK 675

Query: 198 PNEVSYCILATAHAV---ARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDL 254
           PN V++ +L   H +    +       + E LEK        TL    IL   L K   +
Sbjct: 676 PNAVTFNVLM--HGLFKDGKTDRAFSLFKEMLEKDEV---PPTLVSYTILIDGLGKAGRV 730

Query: 255 ERIWATVQELPN----VRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSV 310
              ++  QE+ +        +Y   I +  +  ++  A++L  +M  +      + Y+++
Sbjct: 731 SEAFSQFQEMIDRGIIPECHTYTSLIYSLAKAGRIPEAKKLVEDMVKLGVNPDVQAYSAL 790

Query: 311 ISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALG 348
           I+    +  +D A  + +EM   GC PN +TY+ L  G
Sbjct: 791 ITGLIDSSMVDTAWDVFQEMMKRGCAPNEVTYKVLRRG 828



 Score = 49.7 bits (117), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 83/409 (20%), Positives = 163/409 (39%), Gaps = 28/409 (6%)

Query: 33  INRLRKLQLNKRALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQGEKLFCCI---- 88
           I+ L K Q+   A +V E ++ ++   P  + Y+ L++   K   + +  KL   +    
Sbjct: 440 IDGLCKAQMLPDACKVFEQMV-QKGCVPDTITYTTLIDGFSKASKMDEARKLLDVMLTKG 498

Query: 89  PKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKT 148
           P+     + Y ++V       +I  + E + +MR  G      +F  L+    S GR + 
Sbjct: 499 PE--PTAVTYGSIVHGFCKLDMINEAKEVIAQMRERGCEPGLFIFTSLLSYYLSKGRAEE 556

Query: 149 IPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSY-CILA 207
              +L +M A   AP V  +  L+ +  +   +     V+  M      P+ ++Y  I+ 
Sbjct: 557 AYQVLTEMTARGCAPDVILYTSLIDLLFSTGRVPEARHVFDSMIEKGCAPDALTYGTIIQ 616

Query: 208 TAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQEL--- 264
               +  +    E  +E + KS  G +    + L  + GY+ K + +++ +     +   
Sbjct: 617 NFSKIGNVEAAGEI-LELMAKSGVGPDCFAYNSL--MDGYV-KLERVDQAFGVYDRMVAS 672

Query: 265 ---PNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKAT-EQYNSVISVYCKNGFI 320
              PN  + ++ + +    +  +  RA  L+ EM    ++  T   Y  +I    K G +
Sbjct: 673 GIKPN--AVTFNVLMHGLFKDGKTDRAFSLFKEMLEKDEVPPTLVSYTILIDGLGKAGRV 730

Query: 321 DKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPW 380
            +A    +EM   G  P   TY  L     K+  + E  K +E  +KL          P 
Sbjct: 731 SEAFSQFQEMIDRGIIPECHTYTSLIYSLAKAGRIPEAKKLVEDMVKL-------GVNPD 783

Query: 381 LETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKA 429
           ++   ++I    +   V  A ++F+E+ K         Y  L + +  A
Sbjct: 784 VQAYSALITGLIDSSMVDTAWDVFQEMMKRGCAPNEVTYKVLRRGFRAA 832


>gi|357166784|ref|XP_003580849.1| PREDICTED: pentatricopeptide repeat-containing protein At5g04810,
           chloroplastic-like [Brachypodium distachyon]
          Length = 904

 Score = 76.3 bits (186), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 66/305 (21%), Positives = 129/305 (42%), Gaps = 18/305 (5%)

Query: 131 LVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSD 190
           ++++ +I  +   G       ++R+M+ D +   +  +H +M       + +  + V+  
Sbjct: 375 IIYSNIIHAHCQSGNMDRAEELVREMEEDGIDAPIDAYHSMMHGYTIIQDEKKCLIVFER 434

Query: 191 MKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAK 250
           +K     P+ +SY  L   +      T A    + +E     +N  T  +LI  + +L  
Sbjct: 435 LKECCFTPSIISYGCLINLYIKIGKVTKAIAISKEMESYGIKHNNKTYSMLISGFIHL-- 492

Query: 251 GKDLERIWATVQEL------PNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKAT 304
             D    ++  +E+      P+     Y L IEAF ++  + RA  +  +MQ  +   + 
Sbjct: 493 -HDFANAFSIFEEMLKSGLQPD--RAIYNLLIEAFCKMGNMDRAIRILEKMQKERMQPSN 549

Query: 305 EQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALEL 364
             +  +I  +   G + +A  +L  M  +GC P  +TY  L  G  K N VE        
Sbjct: 550 RAFRPIIEGFAVAGDMKRALNILDLMRRSGCAPTVMTYNALIHGLIKKNQVER------- 602

Query: 365 GMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIK 424
            + ++    +   TP   T   I+  +A  GD+G A   F ++K+       ++Y TL++
Sbjct: 603 AVSVLNKMSIAGITPNEHTYTIIMRGYAANGDIGKAFEYFTKIKEGGLKLDVYIYETLLR 662

Query: 425 AYVKA 429
           A  K+
Sbjct: 663 ACCKS 667



 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 82/329 (24%), Positives = 139/329 (42%), Gaps = 14/329 (4%)

Query: 65  YSYLLEFTIKNHGISQGEKLFCCIPKD--YQNELLYNNLVIACLDKGVIKLSLEYMKKMR 122
           YS L+   I  H  +    +F  + K     +  +YN L+ A    G +  ++  ++KM+
Sbjct: 482 YSMLISGFIHLHDFANAFSIFEEMLKSGLQPDRAIYNLLIEAFCKMGNMDRAIRILEKMQ 541

Query: 123 VLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIE 182
                 S   F  +I   +  G  K   NIL  M+    AP V T++ L+      + +E
Sbjct: 542 KERMQPSNRAFRPIIEGFAVAGDMKRALNILDLMRRSGCAPTVMTYNALIHGLIKKNQVE 601

Query: 183 GLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLI 242
             + V + M  + + PNE +Y I+   +A       A  Y   +++         LDV I
Sbjct: 602 RAVSVLNKMSIAGITPNEHTYTIIMRGYAANGDIGKAFEYFTKIKEGGL-----KLDVYI 656

Query: 243 --ILYGYLAKGKDLERIWATVQELPNVR----SKSYVLAIEAFGRIAQVSRAEELWLEMQ 296
              L     K   ++   A  +E+   +    +  Y + I+ + R   V  A +L  +M+
Sbjct: 657 YETLLRACCKSGRMQSALAVTREMSTQKIARNTFVYNILIDGWARRGDVWEAADLMKQMK 716

Query: 297 SVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVE 356
                     Y S I+  CK G + +A  +++EM+  G KPN  TY  L  G  K++L +
Sbjct: 717 EDGVPPNIHTYTSYINACCKAGDMQRAQKVIEEMADVGLKPNLKTYTTLIKGWAKASLPD 776

Query: 357 EGFKALELGMKLITTKKVRSSTPWLETTL 385
              K+ E  MKL   K   ++   L T+L
Sbjct: 777 RALKSFE-EMKLAGLKPDEAAYHCLVTSL 804



 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 97/426 (22%), Positives = 165/426 (38%), Gaps = 56/426 (13%)

Query: 39  LQLNKRALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQGEKLFCCIPKDYQN-ELL 97
           +Q  K+ L V E  ++E  + P  + Y  L+   IK   +++       I K+ ++  + 
Sbjct: 422 IQDEKKCLIVFE-RLKECCFTPSIISYGCLINLYIKIGKVTKA----IAISKEMESYGIK 476

Query: 98  YNNLVIACLDKGVIKL-----SLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNI 152
           +NN   + L  G I L     +    ++M   G      ++N LI      G       I
Sbjct: 477 HNNKTYSMLISGFIHLHDFANAFSIFEEMLKSGLQPDRAIYNLLIEAFCKMGNMDRAIRI 536

Query: 153 LRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAV 212
           L +M+ +++ P    F  +++  A   +++  + +   M+RS   P  ++Y  L   H +
Sbjct: 537 LEKMQKERMQPSNRAFRPIIEGFAVAGDMKRALNILDLMRRSGCAPTVMTYNALI--HGL 594

Query: 213 ARLYTVAETYVEALEK-SMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSKS 271
            +   V E  V  L K S+ G   +     II+ GY A G D+ +               
Sbjct: 595 IKKNQV-ERAVSVLNKMSIAGITPNEHTYTIIMRGYAANG-DIGK--------------- 637

Query: 272 YVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMS 331
              A E F +I +     ++++             Y +++   CK+G +  A  + +EMS
Sbjct: 638 ---AFEYFTKIKEGGLKLDVYI-------------YETLLRACCKSGRMQSALAVTREMS 681

Query: 332 MNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIF 391
                 N   Y  L  G  +   V E          L+   K     P + T  S I   
Sbjct: 682 TQKIARNTFVYNILIDGWARRGDVWEA-------ADLMKQMKEDGVPPNIHTYTSYINAC 734

Query: 392 AEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKINDPNL--LRRMILGGARPDA 449
            + GD+  A+ + EE+           Y TLIK + KA + D  L     M L G +PD 
Sbjct: 735 CKAGDMQRAQKVIEEMADVGLKPNLKTYTTLIKGWAKASLPDRALKSFEEMKLAGLKPDE 794

Query: 450 ETYSLL 455
             Y  L
Sbjct: 795 AAYHCL 800



 Score = 52.0 bits (123), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 72/360 (20%), Positives = 142/360 (39%), Gaps = 43/360 (11%)

Query: 133 FNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMK 192
           F  +I+  +  G +         M+A  + P+   F  L+   A   ++ G++    +MK
Sbjct: 272 FGLMIVYYAKRGDKHHARATFENMRARGIEPNAFVFTSLVHAYAVARDMRGVLSCVEEMK 331

Query: 193 RSEVEPNEVSYCILATAHA-VARLYTVAETYVEALEK--SMTGNNWSTLDVLIILYGYLA 249
              +E   V+Y I+    A +    +    + EA  K   + G  +S      I++ +  
Sbjct: 332 AEGIELTIVTYSIIIAGFAKINDAQSADNLFKEAKAKLGDLNGIIYSN-----IIHAHCQ 386

Query: 250 KGKDLERIWATVQELP----NVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATE 305
            G +++R    V+E+     +    +Y   +  +  I    +   ++  ++      +  
Sbjct: 387 SG-NMDRAEELVREMEEDGIDAPIDAYHSMMHGYTIIQDEKKCLIVFERLKECCFTPSII 445

Query: 306 QYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHL------------ALGCFKS- 352
            Y  +I++Y K G + KA  + KEM   G K N  TY  L            A   F+  
Sbjct: 446 SYGCLINLYIKIGKVTKAIAISKEMESYGIKHNNKTYSMLISGFIHLHDFANAFSIFEEM 505

Query: 353 ------------NLVEEGF---KALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDV 397
                       NL+ E F     ++  ++++   +     P       IIE FA  GD+
Sbjct: 506 LKSGLQPDRAIYNLLIEAFCKMGNMDRAIRILEKMQKERMQPSNRAFRPIIEGFAVAGDM 565

Query: 398 GNAENLFEELKKANYTKYTFVYNTLIKAYVKAKINDP--NLLRRMILGGARPDAETYSLL 455
             A N+ + ++++        YN LI   +K    +   ++L +M + G  P+  TY+++
Sbjct: 566 KRALNILDLMRRSGCAPTVMTYNALIHGLIKKNQVERAVSVLNKMSIAGITPNEHTYTII 625


>gi|224121664|ref|XP_002330622.1| predicted protein [Populus trichocarpa]
 gi|222872226|gb|EEF09357.1| predicted protein [Populus trichocarpa]
          Length = 378

 Score = 76.3 bits (186), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 66/278 (23%), Positives = 124/278 (44%), Gaps = 8/278 (2%)

Query: 76  HGISQGEKLFCCIPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNR 135
            G+ + E  F  +    + +  Y  ++  C+ +  ++ +   M++MR  G + S   +N 
Sbjct: 25  RGLEEAENYFNKLSVKLKTKYTYGAILNGCVREKSVQKAEAVMQEMREGGMTTSSFPYNI 84

Query: 136 LIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRS- 194
           LIIL S  G    IP ++++M+ + +A    T   L+       +I G+ ++   M+ + 
Sbjct: 85  LIILYSQTGDFDKIPPLMKEMERNGIAEDKYTLRNLIAASVAASDISGVERILKLMEENP 144

Query: 195 EVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMT-GNNWSTLDVLIILYGYLAKGKD 253
           E+  +   Y + A A+        A T +E LEK M      +  + L+ LY       +
Sbjct: 145 ELGLDWKLYAMAADAYLKIGSIETALTMLEKLEKWMAFRKKKAVFNFLLSLYAKTGNKDE 204

Query: 254 LERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQY---NSV 310
           L RIW   +        SY   I++  ++  +  AE+++ E +S  Q   T  +   N +
Sbjct: 205 LYRIWNLYKPSSESMDTSYCCMIDSLTKLDDIEGAEKIFEEWES--QCTTTYDFRVLNGL 262

Query: 311 ISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALG 348
           +  YC  G  +KA   + E ++ G  P A T+  +A G
Sbjct: 263 LVAYCNRGLFEKAEAAI-EKAVQGRTPYASTWHVMAKG 299


>gi|357502217|ref|XP_003621397.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355496412|gb|AES77615.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 550

 Score = 76.3 bits (186), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 82/325 (25%), Positives = 134/325 (41%), Gaps = 45/325 (13%)

Query: 131 LVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSD 190
           + FN LI+     G+ K    +  +M    + P V TF IL+     D NI     + + 
Sbjct: 235 VTFNSLILGFCVVGQLKEAFGLFHEMVLKNINPDVYTFSILVDALCKDGNITRAKNMLAV 294

Query: 191 MKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAK 250
           M +  V P+ V+Y  L   + +          V  + K+                     
Sbjct: 295 MMKQGVIPDVVTYSSLMDGYCL----------VNEVNKA--------------------- 323

Query: 251 GKDLERIWATVQELPNV-RSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNS 309
               + +++T+  L     + SY + I   G+I  V  A  L+ EM        T  YNS
Sbjct: 324 ----KHVFSTMSRLGVAPHAHSYNIMINGLGKIKMVDEALSLFKEMCCKGIAPDTVTYNS 379

Query: 310 VISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLI 369
           +I   CK G I  A  L+ EM  NG   + +TY  L     K++ ++   KA+ L  K+ 
Sbjct: 380 LIDGLCKLGRISYAWQLVDEMHNNGIPADILTYNSLIDVLCKNHHID---KAIALVKKI- 435

Query: 370 TTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKA 429
              K +   P + T   +I+   + G + NA+++F++L    Y+   + YN +I    K 
Sbjct: 436 ---KDQGIQPSMYTYNILIDGLCKGGRLKNAQDVFQDLLIKGYSVNAWTYNIMINGLCKE 492

Query: 430 KINDPN--LLRRMILGGARPDAETY 452
            + +    LL +M   G  PDA TY
Sbjct: 493 GLFNEAEVLLSKMENNGIIPDAVTY 517



 Score = 48.5 bits (114), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 45/218 (20%), Positives = 96/218 (44%), Gaps = 11/218 (5%)

Query: 151 NILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAH 210
           ++   M    VAPH  +++I++        ++  + ++ +M    + P+ V+Y  L    
Sbjct: 325 HVFSTMSRLGVAPHAHSYNIMINGLGKIKMVDEALSLFKEMCCKGIAPDTVTYNSLIDGL 384

Query: 211 AVARLYTVAETYVEALEKSMTGNNWSTLDVLII--LYGYLAKGKDLERIWATVQELPNVR 268
                 + A   V+ +      NN    D+L    L   L K   +++  A V+++ +  
Sbjct: 385 CKLGRISYAWQLVDEMH-----NNGIPADILTYNSLIDVLCKNHHIDKAIALVKKIKDQG 439

Query: 269 SK----SYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKAS 324
            +    +Y + I+   +  ++  A++++ ++           YN +I+  CK G  ++A 
Sbjct: 440 IQPSMYTYNILIDGLCKGGRLKNAQDVFQDLLIKGYSVNAWTYNIMINGLCKEGLFNEAE 499

Query: 325 GLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKAL 362
            LL +M  NG  P+A+TY  +    F+ +  E+  K L
Sbjct: 500 VLLSKMENNGIIPDAVTYETIIRALFRKDENEKAEKLL 537


>gi|356556194|ref|XP_003546411.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g18940-like [Glycine max]
          Length = 829

 Score = 76.3 bits (186), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 86/390 (22%), Positives = 172/390 (44%), Gaps = 27/390 (6%)

Query: 79  SQGEKLFCCIP-KDYQNEL-LYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRL 136
           S   KLF  IP + Y  ++  Y  ++ +    G  K +++   KM+ +G   + + +N +
Sbjct: 197 SIASKLFDLIPVEKYSLDVRAYTTILHSYARTGKYKRAIDLFGKMKEIGLDPTLVTYNVM 256

Query: 137 IILNSSPGRR-KTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSE 195
           + +    GR    I  +L +M++  +     T   ++     +  ++   K  +++K + 
Sbjct: 257 LDVYGKMGRSWDRILELLDEMRSKGLELDEFTCSTVISACGREGMLDEARKFLAELKFNG 316

Query: 196 VEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILY---GYLAKGK 252
            +P  V+Y  +      A +YT A + ++ +E +    +  T + L   Y   G+L +G 
Sbjct: 317 YKPGTVTYNSMLQVFGKAGIYTEALSILKEMEDNNCPPDSVTYNELAATYVRAGFLDEGM 376

Query: 253 DLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVIS 312
            +     +   +PN  + +Y   I+A+G+  +   A  L+  M+ +        YNSV++
Sbjct: 377 AVIDTMTSKGVMPN--AITYTTVIDAYGKAGREDDALRLFSLMKDLGCAPNVYTYNSVLA 434

Query: 313 VYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCF---KSNLVEEGFKALELGMKLI 369
           +  K    +    +L EM +NGC PN  T+  +   C    K N V           K++
Sbjct: 435 MLGKKSRTEDVIKVLCEMKLNGCAPNRATWNTMLAVCSEEGKHNYVN----------KVL 484

Query: 370 TTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKA 429
              K     P  +T  ++I  +A  G   ++  ++ E+ K+ +T     YN L+ A   A
Sbjct: 485 REMKNCGFEPDKDTFNTLISAYARCGSEVDSAKMYGEMVKSGFTPCVTTYNALLNAL--A 542

Query: 430 KIND----PNLLRRMILGGARPDAETYSLL 455
           +  D     ++++ M   G +P+  +YSLL
Sbjct: 543 RRGDWKAAESVIQDMRTKGFKPNENSYSLL 572



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 83/379 (21%), Positives = 159/379 (41%), Gaps = 28/379 (7%)

Query: 87  CIPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRR 146
           C P  Y     YN+++     K   +  ++ + +M++ G + +   +N ++ + S  G+ 
Sbjct: 422 CAPNVYT----YNSVLAMLGKKSRTEDVIKVLCEMKLNGCAPNRATWNTMLAVCSEEGKH 477

Query: 147 KTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCIL 206
             +  +LR+MK     P   TF+ L+   A   +     K+Y +M +S   P   +Y  L
Sbjct: 478 NYVNKVLREMKNCGFEPDKDTFNTLISAYARCGSEVDSAKMYGEMVKSGFTPCVTTYNAL 537

Query: 207 ATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQE--- 263
             A A    +  AE+ ++ +       N ++  +L+  Y      K +E++   + +   
Sbjct: 538 LNALARRGDWKAAESVIQDMRTKGFKPNENSYSLLLHCYSKAGNVKGIEKVEKEIYDGHV 597

Query: 264 LPN-VRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDK 322
            P+ +  ++ VL       +  + RA +   ++Q           NS++S++ +N    K
Sbjct: 598 FPSWILLRTLVLTNHKCRHLRGMERAFD---QLQKYGYKPDLVVINSMLSMFARNKMFSK 654

Query: 323 ASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEG--FKALELGMKLITTKKVRSSTPW 380
           A  +L  +   G +PN  TY      C     V EG  +KA E+       K +++S P 
Sbjct: 655 AREMLHFIHECGLQPNLFTYN-----CLMDLYVREGECWKAEEV------LKGIQNSGPE 703

Query: 381 LETTL--SIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKINDP--NL 436
            +     ++I+ F  KG +  A  +  E+           YNT +  Y   ++ D    +
Sbjct: 704 PDVVSYNTVIKGFCRKGLMQEAIGVLSEMTTKGIQPTIVTYNTFLSGYAGMELFDEANEV 763

Query: 437 LRRMILGGARPDAETYSLL 455
           +R MI    RP   TY +L
Sbjct: 764 IRFMIEHNCRPSELTYKIL 782



 Score = 53.5 bits (127), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 68/347 (19%), Positives = 126/347 (36%), Gaps = 75/347 (21%)

Query: 83  KLFCCIPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSS 142
           KL  C P    N   +N ++  C ++G      + +++M+  G       FN LI   + 
Sbjct: 453 KLNGCAP----NRATWNTMLAVCSEEGKHNYVNKVLREMKNCGFEPDKDTFNTLISAYAR 508

Query: 143 PGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVS 202
            G       +  +M      P V+T++ L+   A   + +    V  DM+    +PNE S
Sbjct: 509 CGSEVDSAKMYGEMVKSGFTPCVTTYNALLNALARRGDWKAAESVIQDMRTKGFKPNENS 568

Query: 203 YCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQ 262
           Y +L   ++ A      E   + +       +W  L  L++        + +ER +  +Q
Sbjct: 569 YSLLLHCYSKAGNVKGIEKVEKEIYDGHVFPSWILLRTLVLTNHKCRHLRGMERAFDQLQ 628

Query: 263 EL---PNV-----------RSK----------------------SYVLAIEAFGRIAQVS 286
           +    P++           R+K                      +Y   ++ + R  +  
Sbjct: 629 KYGYKPDLVVINSMLSMFARNKMFSKAREMLHFIHECGLQPNLFTYNCLMDLYVREGECW 688

Query: 287 RAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNG------------ 334
           +AEE+   +Q+         YN+VI  +C+ G + +A G+L EM+  G            
Sbjct: 689 KAEEVLKGIQNSGPEPDVVSYNTVIKGFCRKGLMQEAIGVLSEMTTKGIQPTIVTYNTFL 748

Query: 335 -----------------------CKPNAITYRHLALGCFKSNLVEEG 358
                                  C+P+ +TY+ L  G  K+   EE 
Sbjct: 749 SGYAGMELFDEANEVIRFMIEHNCRPSELTYKILVDGYCKAGKYEEA 795


>gi|414864980|tpg|DAA43537.1| TPA: hypothetical protein ZEAMMB73_764503 [Zea mays]
          Length = 649

 Score = 76.3 bits (186), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 91/410 (22%), Positives = 174/410 (42%), Gaps = 28/410 (6%)

Query: 56  RPYRPKELDYSYLLEFTIKNHGISQGEKLF-----CCIPKDYQNELLYNNLVIACLDKGV 110
           R  +P  + Y+ +L+   K+    + +++F     C +  D ++   +N L+      G 
Sbjct: 221 RGLKPGIVTYNSVLKGLCKHRRFDKAKEVFRTMDQCSVAPDVRS---FNILIGGFCRVGE 277

Query: 111 IKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHI 170
           +K ++++ K+M+    +   + F+ LI L S  G        LR+MK   + P    + +
Sbjct: 278 VKEAVKFYKEMQHRYVTPDVVSFSCLIGLFSRRGEMDHAGAYLREMKGLGLVPDGVIYTM 337

Query: 171 LMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSM 230
           ++       ++   ++V  +M      P+ V+Y  L            AE  +  +E+  
Sbjct: 338 VIGGFCRAGSMSEALRVRDEMVGFGCLPDVVTYNTLLNGLCKQHRLLDAEKLLNEMEERG 397

Query: 231 TGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSKSYVLA----IEAFGRIAQVS 286
              +  T   LI  +GY  +G + E        L   R +  V+     I+   R   ++
Sbjct: 398 VTPDLCTFTTLI--HGYCRQG-NFENALQLFDTLLRQRLRPDVVTYNSLIDGMCRKGDLA 454

Query: 287 RAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLA 346
           +A ELW +M + + L     Y+ +I  +C+ G ++ A G L EM   G  PN  TY  + 
Sbjct: 455 KANELWDDMHAREILPNHITYSILIDSHCEKGQVEDAFGFLDEMVKKGNLPNIRTYNSII 514

Query: 347 LGCFKSNLVEEGFKALELGMKLITTKKVRSST--PWLETTLSIIEIFAEKGDVGNAENLF 404
            G  +S  V++G + L+         K+R     P L T  ++I  + ++ ++  A N+F
Sbjct: 515 KGYCRSGNVKKGQQFLQ---------KMRQDNVFPDLITFNTLIHGYIKEENMHGAFNVF 565

Query: 405 EELKKANYTKYTFVYNTLIKAYV-KAKINDPN-LLRRMILGGARPDAETY 452
             ++K         YN +I  +  +  + D   + + M   G  PD  TY
Sbjct: 566 NIMEKEMVRPDAVTYNMIINGFSEQGNMQDAGRVFKGMGDSGIEPDRYTY 615



 Score = 75.5 bits (184), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 71/314 (22%), Positives = 138/314 (43%), Gaps = 24/314 (7%)

Query: 152 ILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHA 211
           ++ +M+   V P V T ++L+       +++  + +   M    ++P  V+Y  +     
Sbjct: 179 VISEMEKRCVFPDVVTHNVLIDARFRAGDVDAAIALVDSMANRGLKPGIVTYNSVLKGLC 238

Query: 212 VARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQE---LPNVR 268
             R +  A+     +++     +  + ++LI  +  + + K+  + +  +Q     P+V 
Sbjct: 239 KHRRFDKAKEVFRTMDQCSVAPDVRSFNILIGGFCRVGEVKEAVKFYKEMQHRYVTPDVV 298

Query: 269 SKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLK 328
           S S ++ +  F R  ++  A     EM+ +  +     Y  VI  +C+ G + +A  +  
Sbjct: 299 SFSCLIGL--FSRRGEMDHAGAYLREMKGLGLVPDGVIYTMVIGGFCRAGSMSEALRVRD 356

Query: 329 EMSMNGCKPNAITYRHLALG-CFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSI 387
           EM   GC P+ +TY  L  G C +  L++          KL+   + R  TP L T  ++
Sbjct: 357 EMVGFGCLPDVVTYNTLLNGLCKQHRLLD--------AEKLLNEMEERGVTPDLCTFTTL 408

Query: 388 IEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVK----AKIND--PNLLRRMI 441
           I  +  +G+  NA  LF+ L +         YN+LI    +    AK N+   ++  R I
Sbjct: 409 IHGYCRQGNFENALQLFDTLLRQRLRPDVVTYNSLIDGMCRKGDLAKANELWDDMHAREI 468

Query: 442 LGGARPDAETYSLL 455
           L    P+  TYS+L
Sbjct: 469 L----PNHITYSIL 478



 Score = 42.7 bits (99), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 54/281 (19%), Positives = 116/281 (41%), Gaps = 13/281 (4%)

Query: 85  FCCIPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPG 144
           F C+P    + + YN L+     +  +  + + + +M   G +     F  LI      G
Sbjct: 361 FGCLP----DVVTYNTLLNGLCKQHRLLDAEKLLNEMEERGVTPDLCTFTTLIHGYCRQG 416

Query: 145 RRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYC 204
             +    +   +   ++ P V T++ L+       ++    +++ DM   E+ PN ++Y 
Sbjct: 417 NFENALQLFDTLLRQRLRPDVVTYNSLIDGMCRKGDLAKANELWDDMHAREILPNHITYS 476

Query: 205 ILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILY---GYLAKGKDLERIWATV 261
           IL  +H        A  +++ + K     N  T + +I  Y   G + KG+   +     
Sbjct: 477 ILIDSHCEKGQVEDAFGFLDEMVKKGNLPNIRTYNSIIKGYCRSGNVKKGQQFLQKMRQD 536

Query: 262 QELPNVRSKSYVLAIEAFGRIAQVSRAEELW--LEMQSVKQLKATEQYNSVISVYCKNGF 319
              P++   ++   I  + +   +  A  ++  +E + V+    T  YN +I+ + + G 
Sbjct: 537 NVFPDL--ITFNTLIHGYIKEENMHGAFNVFNIMEKEMVRPDAVT--YNMIINGFSEQGN 592

Query: 320 IDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFK 360
           +  A  + K M  +G +P+  TY  L  G   +   ++ F+
Sbjct: 593 MQDAGRVFKGMGDSGIEPDRYTYMSLINGHVTAGNSKQAFQ 633


>gi|359485373|ref|XP_003633265.1| PREDICTED: pentatricopeptide repeat-containing protein At2g20710,
           mitochondrial-like [Vitis vinifera]
          Length = 461

 Score = 76.3 bits (186), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 83/379 (21%), Positives = 159/379 (41%), Gaps = 20/379 (5%)

Query: 3   RLPRGEPVGSAFQSWMREGFPVHRGEIFHSINRLRKLQLNKRALEVMEWVIRERPYRPKE 62
           R P+   +      W+ EG  V + ++   +  ++  +    ALE+ +W+   R +    
Sbjct: 32  RDPKAS-ISPLLNQWIEEGQTVSKPQLQSLVRIMKDFRRFHHALEISQWMTDRRYFTLTP 90

Query: 63  LDYSYLLEFTIKNHGISQGEKLFCCIPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMR 122
            D +  L+     HG  Q E  F  IP + +    Y  L+   + +  ++ +   M+KMR
Sbjct: 91  SDAAIRLDLISMVHGRVQAESYFNNIPNNLKTSSAYGALLSGYVREKSVEKAEATMQKMR 150

Query: 123 VLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIE 182
            +  + S   +N LI L S  G    I  ++++M++  +     T   LM       +I 
Sbjct: 151 EMDFATSSFPYNMLINLYSQTGNHGKIEALIQEMQSKAIPCDAFTVRNLMVAYVAASDIS 210

Query: 183 GLMKVYSDMKRSEVEPN-EVSYCILATAHAVARLYTVAETYVEALEKSMTG----NNWST 237
            + K    + R E +P+  V + I + A +      + +  +E L+K  +        S 
Sbjct: 211 AMEKF---LNRMEEDPHISVDWNIYSVAASGYLKVGLIDKALEMLKKIESNRPHLERLSA 267

Query: 238 LDVLIILYGYLAKGKDLERIWATVQ---ELPNVRSKSYVLAIEAFGRIAQVSRAEELWLE 294
              L+ LY      ++L R+W   +   E P    ++Y   I    ++  +  AE+++ E
Sbjct: 268 FKFLLSLYARTGHKQELYRVWNLYKPSYEYP----EAYSCMITCLTKLDDIEGAEKIFQE 323

Query: 295 MQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNL 354
            +    +      N ++S YCK    DKA  L+ ++ +    P A T+  LA G  +   
Sbjct: 324 WECECTMYDFRVLNRLLSAYCKRCLFDKAESLVNKV-IEERMPYASTWNILAKGYVEDKQ 382

Query: 355 VEEGFKALELGMKLITTKK 373
           +    KA+E+  K I+  +
Sbjct: 383 MP---KAVEMLKKAISVGR 398


>gi|298204410|emb|CBI16890.3| unnamed protein product [Vitis vinifera]
          Length = 653

 Score = 76.3 bits (186), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 64/229 (27%), Positives = 102/229 (44%), Gaps = 22/229 (9%)

Query: 238 LDVLIILYGYLAKGKDLERIWATVQEL------PNVRSKSYVLAIEAFGRIAQVSRAEEL 291
           L    +L   LAK +    +W   +++      PN+    + + I A  +   V +AE+L
Sbjct: 187 LHACTVLLNSLAKARLTNMVWKVYKKMVRVGVVPNIHI--FNVLIHACCKSGDVEKAEQL 244

Query: 292 WLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALG-CF 350
             EM+S         YN++IS+YCK G   +A G+   M   G  P+ +TY  L  G C 
Sbjct: 245 LNEMESRFIFPDLFTYNTLISLYCKKGMHYEALGIQDRMERGGVSPDIVTYNSLIYGFCR 304

Query: 351 KSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKA 410
           + N +EE  +  E+        +V    P + T  SI+    E+G + +A  L  E+ + 
Sbjct: 305 EVNDLEEALRLREV-------MEVEGLHPGVVTYNSILRKLCEEGKIKDANRLLNEMSER 357

Query: 411 NYTKYTFVYNTLIKAYVKAKINDPN----LLRRMILGGARPDAETYSLL 455
                    NTLI AY   KI D      + ++M+  G +PD  T+  L
Sbjct: 358 KVEPDNVTCNTLINAY--CKIGDMGSAMKVKKKMLEAGLKPDQFTFKAL 404



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 82/379 (21%), Positives = 160/379 (42%), Gaps = 31/379 (8%)

Query: 94  NELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKT--IPN 151
           N  + + LVI   +  + + +++  + MRV  H     +    ++LNS    R T  +  
Sbjct: 151 NSQILSWLVIFYANSRMTQDAIQVFEHMRV--HGFKPHLHACTVLLNSLAKARLTNMVWK 208

Query: 152 ILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHA 211
           + ++M    V P++  F++L+       ++E   ++ ++M+   + P+  +Y  L + + 
Sbjct: 209 VYKKMVRVGVVPNIHIFNVLIHACCKSGDVEKAEQLLNEMESRFIFPDLFTYNTLISLYC 268

Query: 212 VARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLE-----RIWATVQEL-P 265
              ++  A    + +E+     +  T + LI  YG+  +  DLE     R    V+ L P
Sbjct: 269 KKGMHYEALGIQDRMERGGVSPDIVTYNSLI--YGFCREVNDLEEALRLREVMEVEGLHP 326

Query: 266 NVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASG 325
            V + + +L         ++  A  L  EM   K        N++I+ YCK G +  A  
Sbjct: 327 GVVTYNSIL--RKLCEEGKIKDANRLLNEMSERKVEPDNVTCNTLINAYCKIGDMGSAMK 384

Query: 326 LLKEMSMNGCKPNAITYRHLALGCFKSNLVEEG----FKALELGMKLITTKKVRSSTPWL 381
           + K+M   G KP+  T++ L  G  K + V+      F+ L+ G            +P  
Sbjct: 385 VKKKMLEAGLKPDQFTFKALIHGFCKLHEVDSAKEFLFEMLDAGF-----------SPSY 433

Query: 382 ETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKA-KINDPNLLRRM 440
            T   +++ + ++ +      L +EL +        VY  LI+   K  KI     +  +
Sbjct: 434 STYSWLVDSYYDQDNKEAVIRLPDELSRKGLFVDISVYRALIRRLCKIDKIESAERIFTL 493

Query: 441 ILG-GARPDAETYSLLKLA 458
           + G G + D+  Y+ L  A
Sbjct: 494 MQGKGMKGDSVVYTSLAYA 512



 Score = 39.7 bits (91), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 60/272 (22%), Positives = 109/272 (40%), Gaps = 25/272 (9%)

Query: 98  YNNLVIA-CLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQM 156
           YN+L+   C +   ++ +L   + M V G     + +N ++      G+ K    +L +M
Sbjct: 295 YNSLIYGFCREVNDLEEALRLREVMEVEGLHPGVVTYNSILRKLCEEGKIKDANRLLNEM 354

Query: 157 KADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLY 216
              KV P   T + L+       ++   MKV   M  + ++P++ ++   A  H   +L+
Sbjct: 355 SERKVEPDNVTCNTLINAYCKIGDMGSAMKVKKKMLEAGLKPDQFTF--KALIHGFCKLH 412

Query: 217 TV--AETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSKS--- 271
            V  A+ ++  +  +    ++ST   L+  Y Y    K+       V  LP+  S+    
Sbjct: 413 EVDSAKEFLFEMLDAGFSPSYSTYSWLVDSY-YDQDNKE------AVIRLPDELSRKGLF 465

Query: 272 -----YVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGL 326
                Y   I    +I ++  AE ++  MQ       +  Y S+   Y K G    AS +
Sbjct: 466 VDISVYRALIRRLCKIDKIESAERIFTLMQGKGMKGDSVVYTSLAYAYFKAGKAIAASDM 525

Query: 327 LKEMSMNGCKPNAITYRHLALGCFKSNLVEEG 358
           L EM           YR     CF ++   +G
Sbjct: 526 LDEMDKRRLMITLKIYR-----CFSASYAGDG 552


>gi|255547572|ref|XP_002514843.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223545894|gb|EEF47397.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 594

 Score = 76.3 bits (186), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 97/428 (22%), Positives = 187/428 (43%), Gaps = 28/428 (6%)

Query: 36  LRKLQLNKRALEVMEWV--IRERPYRPKELDYSYLLEFTIK----NHGISQGEKLFCCIP 89
           +  L +  R +E ME +  I  R Y+P    ++ ++    K    +  I   +K+   + 
Sbjct: 181 INGLCIEGRIVEAMEQLDYIMSRGYQPTVYTHTMIVNGLCKIGKTSAAIVWMKKM---VE 237

Query: 90  KDYQNELLYNNLVIACLDKG-VIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKT 148
            D + E++  +++I  L K  ++  +++    MR +G S + + +N LI    + G+ K 
Sbjct: 238 LDCEPEVVSYSIIIDSLCKNRLVNEAVDLFYHMRSIGISPTVVTYNSLIYGMCNSGQWKQ 297

Query: 149 IPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILAT 208
              + ++M    + P V TF IL+     +  +   + V+  M +  +EP+ V+Y  L  
Sbjct: 298 ASILFKEMLEWNMKPDVVTFSILVDALCKEGVVLEALSVFGKMIQIAMEPDIVTYSSLIH 357

Query: 209 AHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILY---GYLAKGKDLERIWATVQELP 265
               + L+  + T +  +       +  T  + + ++   G +++ + +  +       P
Sbjct: 358 GVCKSSLWKESSTLLNEMLSRNIRPDVVTFSIWVDVFCKKGMVSEAQSIINLMIERGLRP 417

Query: 266 NVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASG 325
           NV +  Y   ++ +   +Q+  A +++  M +         YN +I  YCK+  ID+A  
Sbjct: 418 NVVT--YNSLMDGYCLHSQMDEARKVFDIMVNKGCAPDVLSYNILIKGYCKSERIDEAKQ 475

Query: 326 LLKEMSMNGCKPNAITYRHLALGCFKSNLVEEG--FKALELGMKLITTKKVRSSTPWLET 383
           L  EMS  G  PN+IT+  L      S L + G  + A EL  K+ +        P L T
Sbjct: 476 LFDEMSHKGLTPNSITHTTLI-----SGLCQAGRPYAAKELFKKMGS----HGCPPDLIT 526

Query: 384 TLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKA-KINDPN-LLRRMI 441
             +++  F + G +  A  LFE LKK+       +   L+    KA K+ D   L   + 
Sbjct: 527 YSTLLSGFCKHGHLDEALALFEALKKSQLKPNHVICKILLGGMCKAGKLEDAKELFSSLS 586

Query: 442 LGGARPDA 449
           +   +PD 
Sbjct: 587 IEELQPDV 594



 Score = 55.5 bits (132), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 86/431 (19%), Positives = 171/431 (39%), Gaps = 54/431 (12%)

Query: 33  INRLRKLQLNKRALEVMEWVIRERPYRPKELDYSYLLE-FTIKNHGISQGEKLFCCIPKD 91
           IN L  L L      V+  + +   ++P  + ++ L+    I+   +   E+L   + + 
Sbjct: 146 INCLCHLHLVGLGFSVLGKIFK-LGFKPSIITFNTLINGLCIEGRIVEAMEQLDYIMSRG 204

Query: 92  YQNELLYNNLVIACLDK-GVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRR--KT 148
           YQ  +  + +++  L K G    ++ +MKKM  L      + ++  II++S    R    
Sbjct: 205 YQPTVYTHTMIVNGLCKIGKTSAAIVWMKKMVELDCEPEVVSYS--IIIDSLCKNRLVNE 262

Query: 149 IPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILAT 208
             ++   M++  ++P V T++ L+    N    +    ++ +M    ++P+ V++ IL  
Sbjct: 263 AVDLFYHMRSIGISPTVVTYNSLIYGMCNSGQWKQASILFKEMLEWNMKPDVVTFSILVD 322

Query: 209 AHAVARLYTVA-ETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNV 267
           A     +   A   + + ++ +M  +        I+ Y  L  G     +W     L N 
Sbjct: 323 ALCKEGVVLEALSVFGKMIQIAMEPD--------IVTYSSLIHGVCKSSLWKESSTLLN- 373

Query: 268 RSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLL 327
                                     EM S         ++  + V+CK G + +A  ++
Sbjct: 374 --------------------------EMLSRNIRPDVVTFSIWVDVFCKKGMVSEAQSII 407

Query: 328 KEMSMNGCKPNAITYRHLALG-CFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLS 386
             M   G +PN +TY  L  G C  S + +E  K  ++ +        +   P + +   
Sbjct: 408 NLMIERGLRPNVVTYNSLMDGYCLHSQM-DEARKVFDIMVN-------KGCAPDVLSYNI 459

Query: 387 IIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKA--KINDPNLLRRMILGG 444
           +I+ + +   +  A+ LF+E+     T  +  + TLI    +A        L ++M   G
Sbjct: 460 LIKGYCKSERIDEAKQLFDEMSHKGLTPNSITHTTLISGLCQAGRPYAAKELFKKMGSHG 519

Query: 445 ARPDAETYSLL 455
             PD  TYS L
Sbjct: 520 CPPDLITYSTL 530


>gi|302753404|ref|XP_002960126.1| hypothetical protein SELMODRAFT_437260 [Selaginella moellendorffii]
 gi|300171065|gb|EFJ37665.1| hypothetical protein SELMODRAFT_437260 [Selaginella moellendorffii]
          Length = 310

 Score = 76.3 bits (186), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 67/226 (29%), Positives = 109/226 (48%), Gaps = 17/226 (7%)

Query: 220 ETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATV-QELPNVRSKSYVLAIEA 278
           E    A    ++  N   L  L+ ++GYL     +  IW+ V Q  P +   SY  AI+A
Sbjct: 92  EALAAAKSVDLSTANERDLANLMEIHGYLHDPDSVGAIWSIVKQRSPRLLHDSYAAAIKA 151

Query: 279 FGRIAQVSRAEELWLEMQSVKQLK-ATEQYNSVISVYCKNGFIDKASGLLKEMSMNGC-K 336
           FG + +V +AE +  E  + K ++     Y+ +I VY + G +D+A   L+  + N   +
Sbjct: 152 FGLVGEVEKAEVVLEETIASKSVRYGINPYHGIIEVYARVGLLDRAEETLRRKTDNSVFQ 211

Query: 337 PNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGD 396
           P    +  L LG    N +    + LE G +    +++ SS  +L TT+ ++ +FA + D
Sbjct: 212 P----FNSLILGYLARNDIAIALQLLEEGWE---KRQIDSSLGYL-TTIKLLRVFAARRD 263

Query: 397 VGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKINDPN--LLRRM 440
           VG+AE L    +  N    T   N +I  Y  A+   PN  LLRR+
Sbjct: 264 VGSAEKLIAMYR--NRGDSTLC-NAIINVYAAAQ-QPPNFQLLRRL 305


>gi|30840327|emb|CAD61286.1| fertility restorer homologue [Raphanus sativus]
 gi|134302843|gb|ABO70665.1| restorer-of-fertility [Raphanus sativus]
 gi|157931526|gb|ABW04887.1| PPR [Raphanus sativus]
 gi|194295008|gb|ABO70666.2| restorer-of-fertility [Raphanus sativus]
          Length = 687

 Score = 76.3 bits (186), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 105/435 (24%), Positives = 178/435 (40%), Gaps = 61/435 (14%)

Query: 30  FHSINRLRKLQLNKRALEVMEWVIRERPYRPKELDYSYLLEFTIK----NHGISQGEKLF 85
           FH I  L        A+++   ++R RP  P  +D+  L+   ++    +  IS  +K+ 
Sbjct: 54  FHEIKGLED------AIDLFSDMLRSRPL-PSVVDFCKLMGVVVRMERPDLVISLYQKM- 105

Query: 86  CCIPKDYQNELLYNNLVIACL-DKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPG 144
               K  + ++    ++I C      +  +L    K+  LG     + FN L+       
Sbjct: 106 --ERKQIRCDIYSFTILIKCFCSCSKLPFALSTFGKITKLGLHPDVVTFNTLLHGLCVED 163

Query: 145 RRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYC 204
           R     N+  QM      P+V TF  LM     +  I   + +   M    ++P +++Y 
Sbjct: 164 RVSEALNLFHQMFETTCRPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITY- 222

Query: 205 ILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQEL 264
                           T V+ + K   G+  S L++L          + +E +   +   
Sbjct: 223 ---------------GTIVDGMCKK--GDTVSALNLL----------RKMEEVSHII--- 252

Query: 265 PNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKAS 324
           PNV   S +  I++  +  + S A+ L+ EMQ          YNS+I  +C +G    A 
Sbjct: 253 PNVVIYSAI--IDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVGFCSSGRWSDAE 310

Query: 325 GLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEG--FKALELGMKLITTKKVRSSTPWLE 382
            LL+EM      P+ +TY  L      +  V+EG  F+A EL  +++     R   P   
Sbjct: 311 QLLQEMLERKISPDVVTYNALI-----NAFVKEGKFFEAEELYDEMLP----RGIIPNTI 361

Query: 383 TTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAK-INDP-NLLRRM 440
           T  S+I+ F ++  +  AE++F  +     +     +NTLI  Y  AK I+D   LL  M
Sbjct: 362 TYSSMIDGFCKQNRLDAAEHMFYLMATKGCSPNLITFNTLIDGYCGAKRIDDGMELLHEM 421

Query: 441 ILGGARPDAETYSLL 455
              G   D  TY+ L
Sbjct: 422 TETGLVADTTTYNTL 436



 Score = 61.2 bits (147), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 70/318 (22%), Positives = 122/318 (38%), Gaps = 19/318 (5%)

Query: 131 LVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSD 190
             +N +I+   S GR      +L++M   K++P V T++ L+     +       ++Y +
Sbjct: 291 FTYNSMIVGFCSSGRWSDAEQLLQEMLERKISPDVVTYNALINAFVKEGKFFEAEELYDE 350

Query: 191 MKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAK 250
           M    + PN ++Y  +            AE     +       N  T + LI  Y    +
Sbjct: 351 MLPRGIIPNTITYSSMIDGFCKQNRLDAAEHMFYLMATKGCSPNLITFNTLIDGYCGAKR 410

Query: 251 GKDLERIWATVQELPNV-RSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNS 309
             D   +   + E   V  + +Y   I  F  +  ++ A +L  EM S          ++
Sbjct: 411 IDDGMELLHEMTETGLVADTTTYNTLIHGFYLVGDLNAALDLLQEMISSGLCPDIVTCDT 470

Query: 310 VISVYCKNGFIDKASGLLKEMS-----------MNGCKPNAITYRHLALGCFKSNLVEEG 358
           ++   C NG +  A  + K M             NG +P+  TY  L      S L+ EG
Sbjct: 471 LLDGLCDNGKLKDALEMFKVMQKSKKDLDASHPFNGVEPDVQTYNILI-----SGLINEG 525

Query: 359 FKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFV 418
            K LE   +L      R   P   T  S+I+   ++  +  A  +F+ +   +++     
Sbjct: 526 -KFLE-AEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFDSMGSKSFSPNVVT 583

Query: 419 YNTLIKAYVKAKINDPNL 436
           + TLI  Y KA   D  L
Sbjct: 584 FTTLINGYCKAGRVDDGL 601



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 70/350 (20%), Positives = 142/350 (40%), Gaps = 26/350 (7%)

Query: 98  YNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMK 157
           YN L+ A + +G    + E   +M   G   + + ++ +I       R     ++   M 
Sbjct: 328 YNALINAFVKEGKFFEAEELYDEMLPRGIIPNTITYSSMIDGFCKQNRLDAAEHMFYLMA 387

Query: 158 ADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYT 217
               +P++ TF+ L+        I+  M++  +M  + +  +  +Y  L     +     
Sbjct: 388 TKGCSPNLITFNTLIDGYCGAKRIDDGMELLHEMTETGLVADTTTYNTLIHGFYLVGDLN 447

Query: 218 VAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQEL------------- 264
            A   ++ +  S    +  T D L+       K KD   ++  +Q+              
Sbjct: 448 AALDLLQEMISSGLCPDIVTCDTLLDGLCDNGKLKDALEMFKVMQKSKKDLDASHPFNGV 507

Query: 265 -PNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKA 323
            P+V  ++Y + I       +   AEEL+ EM     +  T  Y+S+I   CK   +D+A
Sbjct: 508 EPDV--QTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEA 565

Query: 324 SGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKAL-ELGMKLITTKKVRSSTPWLE 382
           + +   M      PN +T+  L  G  K+  V++G +   E+G + I    +        
Sbjct: 566 TQMFDSMGSKSFSPNVVTFTTLINGYCKAGRVDDGLELFCEMGRRGIVANAI-------- 617

Query: 383 TTLSIIEIFAEKGDVGNAENLFEELKKAN-YTKYTFVYNTLIKAYVKAKI 431
           T +++I  F + G++  A ++F+E+  +  Y     + N L   + K ++
Sbjct: 618 TYITLICGFRKVGNINGALDIFQEMISSGVYPDTITIRNMLTGLWSKEEL 667



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 63/319 (19%), Positives = 127/319 (39%), Gaps = 70/319 (21%)

Query: 172 MKIEANDHNIEGL---MKVYSDMKRSEVEPNEVSYC-ILATAHAVARLYTVAETYVEALE 227
           +K+++  H I+GL   + ++SDM RS   P+ V +C ++     + R   V   Y + +E
Sbjct: 48  LKLQSGFHEIKGLEDAIDLFSDMLRSRPLPSVVDFCKLMGVVVRMERPDLVISLY-QKME 106

Query: 228 KSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSR 287
           +     +  +  +LI             + + +  +LP         A+  FG+I ++  
Sbjct: 107 RKQIRCDIYSFTILI-------------KCFCSCSKLP--------FALSTFGKITKLGL 145

Query: 288 AEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLAL 347
             ++               +N+++   C    + +A  L  +M    C+PN +T+  L  
Sbjct: 146 HPDVV-------------TFNTLLHGLCVEDRVSEALNLFHQMFETTCRPNVVTFTTLMN 192

Query: 348 G-CFKSNLV----------EEGFKALELGMKLITT------------------KKVRSST 378
           G C +  +V          E+G +  ++    I                    ++V    
Sbjct: 193 GLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDGMCKKGDTVSALNLLRKMEEVSHII 252

Query: 379 PWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAK--INDPNL 436
           P +    +II+   + G   +A+NLF E+++       F YN++I  +  +    +   L
Sbjct: 253 PNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVGFCSSGRWSDAEQL 312

Query: 437 LRRMILGGARPDAETYSLL 455
           L+ M+     PD  TY+ L
Sbjct: 313 LQEMLERKISPDVVTYNAL 331


>gi|134302847|gb|ABO70667.1| restorer-of-fertility [Raphanus sativus]
          Length = 687

 Score = 76.3 bits (186), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 105/435 (24%), Positives = 178/435 (40%), Gaps = 61/435 (14%)

Query: 30  FHSINRLRKLQLNKRALEVMEWVIRERPYRPKELDYSYLLEFTIK----NHGISQGEKLF 85
           FH I  L        A+++   ++R RP  P  +D+  L+   ++    +  IS  +K+ 
Sbjct: 54  FHEIKGLED------AIDLFSDMLRSRPL-PSVVDFCKLMGVVVRMERPDLVISLYQKM- 105

Query: 86  CCIPKDYQNELLYNNLVIACL-DKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPG 144
               K  + ++   N++I C      +  +L    K+  LG     + F  L+       
Sbjct: 106 --ERKQIRCDIYSFNILIKCFCSCSKLPFALSTFGKITKLGLHPDVVTFTTLLHGLCVED 163

Query: 145 RRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYC 204
           R     N+  QM      P+V TF  LM     +  I   + +   M    ++P +++Y 
Sbjct: 164 RVSEALNLFHQMFETTCRPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITY- 222

Query: 205 ILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQEL 264
                           T V+ + K   G+  S L++L          + +E +   +   
Sbjct: 223 ---------------GTIVDGMCKK--GDTVSALNLL----------RKMEEVSHII--- 252

Query: 265 PNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKAS 324
           PNV   S +  I++  +  + S A+ L+ EMQ          YNS+I  +C +G    A 
Sbjct: 253 PNVVIYSAI--IDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVGFCSSGRWSDAE 310

Query: 325 GLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEG--FKALELGMKLITTKKVRSSTPWLE 382
            LL+EM      P+ +TY  L      +  V+EG  F+A EL  +++     R   P   
Sbjct: 311 QLLQEMLERKISPDVVTYNALI-----NAFVKEGKFFEAEELYDEMLP----RGIIPNTI 361

Query: 383 TTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAK-INDP-NLLRRM 440
           T  S+I+ F ++  +  AE++F  +     +     +NTLI  Y  AK I+D   LL  M
Sbjct: 362 TYSSMIDGFCKQNRLDAAEHMFYLMATKGCSPNLITFNTLIDGYCGAKRIDDGMELLHEM 421

Query: 441 ILGGARPDAETYSLL 455
              G   D  TY+ L
Sbjct: 422 TETGLVADTTTYNTL 436



 Score = 66.6 bits (161), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 70/294 (23%), Positives = 133/294 (45%), Gaps = 20/294 (6%)

Query: 172 MKIEANDHNIEGL---MKVYSDMKRSEVEPNEVSYC-ILATAHAVARLYTVAETYVEALE 227
           +K+++  H I+GL   + ++SDM RS   P+ V +C ++     + R   V   Y + +E
Sbjct: 48  LKLQSGFHEIKGLEDAIDLFSDMLRSRPLPSVVDFCKLMGVVVRMERPDLVISLY-QKME 106

Query: 228 KSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQEL---PNVRSKSYVLAIEAFGRIAQ 284
           +     +  + ++LI  +   +K       +  + +L   P+V   ++   +       +
Sbjct: 107 RKQIRCDIYSFNILIKCFCSCSKLPFALSTFGKITKLGLHPDV--VTFTTLLHGLCVEDR 164

Query: 285 VSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRH 344
           VS A  L+ +M           + ++++  C+ G I +A  LL  M  +G +P  ITY  
Sbjct: 165 VSEALNLFHQMFETTCRPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGT 224

Query: 345 LALG-CFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENL 403
           +  G C K + V     AL L  K+   ++V    P +    +II+   + G   +A+NL
Sbjct: 225 IVDGMCKKGDTV----SALNLLRKM---EEVSHIIPNVVIYSAIIDSLCKDGRHSDAQNL 277

Query: 404 FEELKKANYTKYTFVYNTLIKAYVKAK--INDPNLLRRMILGGARPDAETYSLL 455
           F E+++       F YN++I  +  +    +   LL+ M+     PD  TY+ L
Sbjct: 278 FTEMQEKGIFPDLFTYNSMIVGFCSSGRWSDAEQLLQEMLERKISPDVVTYNAL 331



 Score = 61.2 bits (147), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 70/318 (22%), Positives = 122/318 (38%), Gaps = 19/318 (5%)

Query: 131 LVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSD 190
             +N +I+   S GR      +L++M   K++P V T++ L+     +       ++Y +
Sbjct: 291 FTYNSMIVGFCSSGRWSDAEQLLQEMLERKISPDVVTYNALINAFVKEGKFFEAEELYDE 350

Query: 191 MKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAK 250
           M    + PN ++Y  +            AE     +       N  T + LI  Y    +
Sbjct: 351 MLPRGIIPNTITYSSMIDGFCKQNRLDAAEHMFYLMATKGCSPNLITFNTLIDGYCGAKR 410

Query: 251 GKDLERIWATVQELPNV-RSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNS 309
             D   +   + E   V  + +Y   I  F  +  ++ A +L  EM S          ++
Sbjct: 411 IDDGMELLHEMTETGLVADTTTYNTLIHGFYLVGDLNAALDLLQEMISSGLCPDIVTCDT 470

Query: 310 VISVYCKNGFIDKASGLLKEMS-----------MNGCKPNAITYRHLALGCFKSNLVEEG 358
           ++   C NG +  A  + K M             NG +P+  TY  L      S L+ EG
Sbjct: 471 LLDGLCDNGKLKDALEMFKVMQKSKKDLDASHPFNGVEPDVQTYNILI-----SGLINEG 525

Query: 359 FKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFV 418
            K LE   +L      R   P   T  S+I+   ++  +  A  +F+ +   +++     
Sbjct: 526 -KFLE-AEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFDSMGSKSFSPNVVT 583

Query: 419 YNTLIKAYVKAKINDPNL 436
           + TLI  Y KA   D  L
Sbjct: 584 FTTLINGYCKAGRVDDGL 601



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 70/350 (20%), Positives = 142/350 (40%), Gaps = 26/350 (7%)

Query: 98  YNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMK 157
           YN L+ A + +G    + E   +M   G   + + ++ +I       R     ++   M 
Sbjct: 328 YNALINAFVKEGKFFEAEELYDEMLPRGIIPNTITYSSMIDGFCKQNRLDAAEHMFYLMA 387

Query: 158 ADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYT 217
               +P++ TF+ L+        I+  M++  +M  + +  +  +Y  L     +     
Sbjct: 388 TKGCSPNLITFNTLIDGYCGAKRIDDGMELLHEMTETGLVADTTTYNTLIHGFYLVGDLN 447

Query: 218 VAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQEL------------- 264
            A   ++ +  S    +  T D L+       K KD   ++  +Q+              
Sbjct: 448 AALDLLQEMISSGLCPDIVTCDTLLDGLCDNGKLKDALEMFKVMQKSKKDLDASHPFNGV 507

Query: 265 -PNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKA 323
            P+V  ++Y + I       +   AEEL+ EM     +  T  Y+S+I   CK   +D+A
Sbjct: 508 EPDV--QTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEA 565

Query: 324 SGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKAL-ELGMKLITTKKVRSSTPWLE 382
           + +   M      PN +T+  L  G  K+  V++G +   E+G + I    +        
Sbjct: 566 TQMFDSMGSKSFSPNVVTFTTLINGYCKAGRVDDGLELFCEMGRRGIVANAI-------- 617

Query: 383 TTLSIIEIFAEKGDVGNAENLFEELKKAN-YTKYTFVYNTLIKAYVKAKI 431
           T +++I  F + G++  A ++F+E+  +  Y     + N L   + K ++
Sbjct: 618 TYITLICGFRKVGNINGALDIFQEMISSGVYPDTITIRNMLTGLWSKEEL 667


>gi|255578371|ref|XP_002530052.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223530468|gb|EEF32352.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 554

 Score = 76.3 bits (186), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 76/368 (20%), Positives = 155/368 (42%), Gaps = 23/368 (6%)

Query: 98  YNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMK 157
           YN  +   ++     L+  Y  +M   G S+S   ++R I           I  +L  M+
Sbjct: 47  YNRFIGVLINHSRFDLANHYYSQMGTRGFSLSSFTYSRFITGLCKVKNFTFIDELLHDME 106

Query: 158 ADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLY- 216
                P +  F+I + +   +  I+  ++V+  + ++  +P+ V+Y I+   H V ++  
Sbjct: 107 TLNCLPDIWAFNIYLHLLFVEGRIDLALEVFEKIVKNGRKPDVVTYTIII--HGVCKIKK 164

Query: 217 --TVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQEL-----PNVRS 269
             T  + + + + K  + +N +   +++     L  G+ ++  +  + ++       + +
Sbjct: 165 FDTAIQFWRDMIHKGFSPDNKACGAIVV----GLCDGRKVDLAYELIIDVMKSGRVKLST 220

Query: 270 KSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKE 329
             Y   I  F R  ++ +A+ +   M+          YN  ++ +C    +D A  LLK 
Sbjct: 221 LVYNALISGFCRAGRIDKAQAIKSFMRRNGCEPDLVTYNVFLNYFCDELMLDDAKKLLKL 280

Query: 330 MSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIE 389
           M  +G +P+  +Y  L  G  K N  ++ +        L+T K        + +  +II+
Sbjct: 281 MERSGIEPDVYSYNQLLKGICKGNCPDKAY-------LLMTNKMWPKGLCDVVSYNTIIK 333

Query: 390 IFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYV-KAKIN-DPNLLRRMILGGARP 447
            F + GD  +A  LFEE+ +         +   IKA++ K   N    LL +M   G  P
Sbjct: 334 AFCKIGDTTSAYKLFEEMGQKGIPPDVVTFTIFIKAFLGKGSFNIAKKLLDQMTEMGLSP 393

Query: 448 DAETYSLL 455
           D   Y+ +
Sbjct: 394 DCIFYTTI 401


>gi|152717466|dbj|BAF73724.1| pentatricopeptide repeat protein [Raphanus sativus]
          Length = 687

 Score = 76.3 bits (186), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 105/435 (24%), Positives = 178/435 (40%), Gaps = 61/435 (14%)

Query: 30  FHSINRLRKLQLNKRALEVMEWVIRERPYRPKELDYSYLLEFTIK----NHGISQGEKLF 85
           FH I  L        A+++   ++R RP  P  +D+  L+   ++    +  IS  +K+ 
Sbjct: 54  FHEIKGLED------AIDLFSDMLRSRPL-PSVVDFCKLMGVVVRMERPDLVISLYQKM- 105

Query: 86  CCIPKDYQNELLYNNLVIACL-DKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPG 144
               K  + ++    ++I C      +  +L    K+  LG     + FN L+       
Sbjct: 106 --ERKQIRCDIYSFTILIKCFCSCSKLPFALSTFGKLTKLGLHPDVVTFNTLLHGLCVED 163

Query: 145 RRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYC 204
           R     N+  QM      P+V TF  LM     +  I   + +   M    ++P +++Y 
Sbjct: 164 RVSEALNLFHQMFETTCRPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITY- 222

Query: 205 ILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQEL 264
                           T V+ + K   G+  S L++L          + +E +   +   
Sbjct: 223 ---------------GTIVDGMCKK--GDTVSALNLL----------RKMEEVSHII--- 252

Query: 265 PNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKAS 324
           PNV   S +  I++  +  + S A+ L+ EMQ          YNS+I  +C +G    A 
Sbjct: 253 PNVVIYSAI--IDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVGFCSSGRWSDAE 310

Query: 325 GLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEG--FKALELGMKLITTKKVRSSTPWLE 382
            LL+EM      P+ +TY  L      +  V+EG  F+A EL  +++     R   P   
Sbjct: 311 QLLQEMLERKISPDVVTYNALI-----NAFVKEGKFFEAEELYDEMLP----RGIIPNTI 361

Query: 383 TTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAK-INDP-NLLRRM 440
           T  S+I+ F ++  +  AE++F  +     +     +NTLI  Y  AK I+D   LL  M
Sbjct: 362 TYSSMIDGFCKQNRLDAAEHMFYLMATKGCSPNLITFNTLIDGYCGAKRIDDGMELLHEM 421

Query: 441 ILGGARPDAETYSLL 455
              G   D  TY+ L
Sbjct: 422 TETGLVADTTTYNTL 436



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 70/318 (22%), Positives = 122/318 (38%), Gaps = 19/318 (5%)

Query: 131 LVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSD 190
             +N +I+   S GR      +L++M   K++P V T++ L+     +       ++Y +
Sbjct: 291 FTYNSMIVGFCSSGRWSDAEQLLQEMLERKISPDVVTYNALINAFVKEGKFFEAEELYDE 350

Query: 191 MKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAK 250
           M    + PN ++Y  +            AE     +       N  T + LI  Y    +
Sbjct: 351 MLPRGIIPNTITYSSMIDGFCKQNRLDAAEHMFYLMATKGCSPNLITFNTLIDGYCGAKR 410

Query: 251 GKDLERIWATVQELPNV-RSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNS 309
             D   +   + E   V  + +Y   I  F  +  ++ A +L  EM S          ++
Sbjct: 411 IDDGMELLHEMTETGLVADTTTYNTLIHGFYLVGDLNAALDLLQEMISSGLCPDIVTCDT 470

Query: 310 VISVYCKNGFIDKASGLLKEMS-----------MNGCKPNAITYRHLALGCFKSNLVEEG 358
           ++   C NG +  A  + K M             NG +P+  TY  L      S L+ EG
Sbjct: 471 LLDGLCDNGKLKDALEMFKVMQKSKKDLDASHPFNGVEPDVQTYNILI-----SGLINEG 525

Query: 359 FKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFV 418
            K LE   +L      R   P   T  S+I+   ++  +  A  +F+ +   +++     
Sbjct: 526 -KFLE-AEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFDSMGSKSFSPNVVT 583

Query: 419 YNTLIKAYVKAKINDPNL 436
           + TLI  Y KA   D  L
Sbjct: 584 FTTLINGYCKAGRVDDGL 601



 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 70/350 (20%), Positives = 142/350 (40%), Gaps = 26/350 (7%)

Query: 98  YNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMK 157
           YN L+ A + +G    + E   +M   G   + + ++ +I       R     ++   M 
Sbjct: 328 YNALINAFVKEGKFFEAEELYDEMLPRGIIPNTITYSSMIDGFCKQNRLDAAEHMFYLMA 387

Query: 158 ADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYT 217
               +P++ TF+ L+        I+  M++  +M  + +  +  +Y  L     +     
Sbjct: 388 TKGCSPNLITFNTLIDGYCGAKRIDDGMELLHEMTETGLVADTTTYNTLIHGFYLVGDLN 447

Query: 218 VAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQEL------------- 264
            A   ++ +  S    +  T D L+       K KD   ++  +Q+              
Sbjct: 448 AALDLLQEMISSGLCPDIVTCDTLLDGLCDNGKLKDALEMFKVMQKSKKDLDASHPFNGV 507

Query: 265 -PNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKA 323
            P+V  ++Y + I       +   AEEL+ EM     +  T  Y+S+I   CK   +D+A
Sbjct: 508 EPDV--QTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEA 565

Query: 324 SGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKAL-ELGMKLITTKKVRSSTPWLE 382
           + +   M      PN +T+  L  G  K+  V++G +   E+G + I    +        
Sbjct: 566 TQMFDSMGSKSFSPNVVTFTTLINGYCKAGRVDDGLELFCEMGRRGIVANAI-------- 617

Query: 383 TTLSIIEIFAEKGDVGNAENLFEELKKAN-YTKYTFVYNTLIKAYVKAKI 431
           T +++I  F + G++  A ++F+E+  +  Y     + N L   + K ++
Sbjct: 618 TYITLICGFRKVGNINGALDIFQEMISSGVYPDTITIRNMLTGLWSKEEL 667


>gi|242084804|ref|XP_002442827.1| hypothetical protein SORBIDRAFT_08g003450 [Sorghum bicolor]
 gi|241943520|gb|EES16665.1| hypothetical protein SORBIDRAFT_08g003450 [Sorghum bicolor]
          Length = 899

 Score = 76.3 bits (186), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 96/413 (23%), Positives = 170/413 (41%), Gaps = 55/413 (13%)

Query: 93  QNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNI 152
           +NE  Y  L+    +   ++ +L  +  M   G S++   +  LI      GR      +
Sbjct: 158 RNEYSYTILIQGLCETRCVREALVLLVMMVQDGCSLNLHTYTLLIKGLCKEGRIHGARRV 217

Query: 153 LRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAV 212
           L +M    V P V T++ ++        ++  + + + M+R+   P++ +Y IL      
Sbjct: 218 LEEMPLRGVVPSVWTYNAMIDGYCKSGRMKDALGIKALMERNGCNPDDWTYNILIYGLCG 277

Query: 213 ARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSKSY 272
            +     E   +A+ +  T    + +    I+ GY       ERI   ++   ++ S + 
Sbjct: 278 EKPDEAEELLNDAIVRGFTP---TVITFTNIINGYCKA----ERIDDALRVKTSMLSSNC 330

Query: 273 VLAIEAFGRIAQV-------SRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASG 325
            L ++A+G +  V         A+E   EM +         Y S+I  YCK G +  A  
Sbjct: 331 KLDLQAYGVLINVLIKKCRFKEAKETVSEMFANGLAPNVVIYTSIIDGYCKVGKVGAALE 390

Query: 326 LLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTL 385
           + + M   GC+PNA TY  L  G     L+++  + L   M LIT  +    TP + T  
Sbjct: 391 VFRLMEHEGCRPNAWTYSSLIYG-----LIQD--QKLHKAMALITKMQEDGITPGVITYT 443

Query: 386 SIIEIFAEKGDVGNAENLFEELKKANYT---------------------KYTFV------ 418
           ++I+   +K +  NA  LFE +++   T                      Y+F+      
Sbjct: 444 TLIQGQCKKHEFDNAFRLFEMMEQNGLTPDEQAYNVLTHALCKSGRAEEAYSFLVRKGVV 503

Query: 419 -----YNTLIKAYVKAKIND--PNLLRRMILGGARPDAETYSLLKLAEQFQKK 464
                Y +L+  + KA   D    L+ +M+  G + D+ TYS+L  A   QKK
Sbjct: 504 LTKVTYTSLVDGFSKAGNTDFAAVLIEKMVNEGCKADSYTYSVLLQALCKQKK 556



 Score = 66.2 bits (160), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 90/443 (20%), Positives = 164/443 (37%), Gaps = 83/443 (18%)

Query: 94  NELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNIL 153
           N ++Y +++      G +  +LE  + M   G   +   ++ LI       +      ++
Sbjct: 368 NVVIYTSIIDGYCKVGKVGAALEVFRLMEHEGCRPNAWTYSSLIYGLIQDQKLHKAMALI 427

Query: 154 RQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVA 213
            +M+ D + P V T+  L++ +   H  +   +++  M+++ + P+E +Y +L   HA+ 
Sbjct: 428 TKMQEDGITPGVITYTTLIQGQCKKHEFDNAFRLFEMMEQNGLTPDEQAYNVLT--HALC 485

Query: 214 RLYTVAE---------------TYVEALEKSMTGNNWSTLDVLI---------------- 242
           +     E               TY   ++      N     VLI                
Sbjct: 486 KSGRAEEAYSFLVRKGVVLTKVTYTSLVDGFSKAGNTDFAAVLIEKMVNEGCKADSYTYS 545

Query: 243 ILYGYLAKGKDLERIWATVQE--LPNVRSK--SYVLAIEAFGRIAQVSRAEELWLEMQSV 298
           +L   L K K L    + + +  L  V+    +Y + I    +  +   A+ ++ EM S 
Sbjct: 546 VLLQALCKQKKLNEALSILDQMTLSGVKCNIVAYTIIISEMIKEGKHDHAKSMFNEMISS 605

Query: 299 KQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEG 358
               +   Y   IS YCK G I++A  L+ EM  +G  P+ +TY     GC     ++  
Sbjct: 606 GHKPSATTYTVFISSYCKIGQIEEAEHLIGEMERDGVAPDVVTYNVFINGCGHMGYMDRA 665

Query: 359 FKALE---------------------LGMKLITTKKVRSSTPW----LETTL-------- 385
           F  L+                     L M L+    V +S  W    L+T          
Sbjct: 666 FSTLKRMIDASCEPNYWTYWILLKHFLKMSLVDAHYVDTSGMWNWIELDTVWQLLERMVK 725

Query: 386 -----------SIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKI--N 432
                      SII  F +   +  A  LF+ ++  + +    +Y  LIK     K+   
Sbjct: 726 HGLNPTAVTYSSIIAGFCKATRLEEACVLFDHMRGKDISPNEEIYTMLIKCCCDIKLFGK 785

Query: 433 DPNLLRRMILGGARPDAETYSLL 455
             + +  MI  G +P  E+Y  L
Sbjct: 786 AVSFVTDMIEFGFQPHLESYHYL 808


>gi|15234349|ref|NP_194530.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75208278|sp|Q9SUD8.1|PP340_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g28010
 gi|4455360|emb|CAB36770.1| putative protein [Arabidopsis thaliana]
 gi|7269655|emb|CAB79603.1| putative protein [Arabidopsis thaliana]
 gi|332660020|gb|AEE85420.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 704

 Score = 76.3 bits (186), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 91/397 (22%), Positives = 170/397 (42%), Gaps = 53/397 (13%)

Query: 96  LLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQ 155
           ++Y +L+    D G +        ++   G S   + +N LI      G+ K    I   
Sbjct: 248 VVYTSLIRGFCDCGELDRGKALFDEVLERGDSPCAITYNTLIRGFCKLGQLKEASEIFEF 307

Query: 156 MKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARL 215
           M    V P+V T+  L+         +  +++ + M   + EPN V+Y I+        L
Sbjct: 308 MIERGVRPNVYTYTGLIDGLCGVGKTKEALQLLNLMIEKDEEPNAVTYNIIINKLCKDGL 367

Query: 216 YTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLER----IWATVQEL----PNV 267
              A   VE ++K  T  +  T ++L  L G  AKG DL+     ++  +++     P+V
Sbjct: 368 VADAVEIVELMKKRRTRPDNITYNIL--LGGLCAKG-DLDEASKLLYLMLKDSSYTDPDV 424

Query: 268 RSKS------------------YVLAIEAFG---------------RIAQVSRAEELWLE 294
            S +                  Y L +E  G               +   V++A ELW +
Sbjct: 425 ISYNALIHGLCKENRLHQALDIYDLLVEKLGAGDRVTTNILLNSTLKAGDVNKAMELWKQ 484

Query: 295 MQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNL 354
           +   K ++ ++ Y ++I  +CK G ++ A GLL +M ++  +P+   Y      C  S+L
Sbjct: 485 ISDSKIVRNSDTYTAMIDGFCKTGMLNVAKGLLCKMRVSELQPSVFDYN-----CLLSSL 539

Query: 355 VEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTK 414
            +EG  +L+   +L    +  ++ P + +   +I+   + GD+ +AE+L   + +A  + 
Sbjct: 540 CKEG--SLDQAWRLFEEMQRDNNFPDVVSFNIMIDGSLKAGDIKSAESLLVGMSRAGLSP 597

Query: 415 YTFVYNTLIKAYVKAKINDP--NLLRRMILGGARPDA 449
             F Y+ LI  ++K    D   +   +M+  G  PDA
Sbjct: 598 DLFTYSKLINRFLKLGYLDEAISFFDKMVDSGFEPDA 634



 Score = 53.5 bits (127), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 45/182 (24%), Positives = 82/182 (45%), Gaps = 9/182 (4%)

Query: 276 IEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGC 335
           ++   R  +  +A  L  EM+    +     YN+VI  +C+   ++KA  L  EM  +GC
Sbjct: 149 LKGLCRNLECGKAVSLLREMRRNSLMPDVFSYNTVIRGFCEGKELEKALELANEMKGSGC 208

Query: 336 KPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKG 395
             + +T+  L     K+  ++E        M  +   K       L    S+I  F + G
Sbjct: 209 SWSLVTWGILIDAFCKAGKMDE-------AMGFLKEMKFMGLEADLVVYTSLIRGFCDCG 261

Query: 396 DVGNAENLFEELKKANYTKYTFVYNTLIKAYVK-AKINDPN-LLRRMILGGARPDAETYS 453
           ++   + LF+E+ +   +     YNTLI+ + K  ++ + + +   MI  G RP+  TY+
Sbjct: 262 ELDRGKALFDEVLERGDSPCAITYNTLIRGFCKLGQLKEASEIFEFMIERGVRPNVYTYT 321

Query: 454 LL 455
            L
Sbjct: 322 GL 323



 Score = 51.6 bits (122), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 51/194 (26%), Positives = 82/194 (42%), Gaps = 11/194 (5%)

Query: 264 LPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKA 323
           +P+V S  Y   I  F    ++ +A EL  EM+      +   +  +I  +CK G +D+A
Sbjct: 174 MPDVFS--YNTVIRGFCEGKELEKALELANEMKGSGCSWSLVTWGILIDAFCKAGKMDEA 231

Query: 324 SGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLET 383
            G LKEM   G + + + Y  L  G       + G   L+ G  L      R  +P   T
Sbjct: 232 MGFLKEMKFMGLEADLVVYTSLIRG-----FCDCG--ELDRGKALFDEVLERGDSPCAIT 284

Query: 384 TLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVK-AKINDP-NLLRRMI 441
             ++I  F + G +  A  +FE + +       + Y  LI       K  +   LL  MI
Sbjct: 285 YNTLIRGFCKLGQLKEASEIFEFMIERGVRPNVYTYTGLIDGLCGVGKTKEALQLLNLMI 344

Query: 442 LGGARPDAETYSLL 455
                P+A TY+++
Sbjct: 345 EKDEEPNAVTYNII 358



 Score = 49.7 bits (117), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 66/288 (22%), Positives = 125/288 (43%), Gaps = 24/288 (8%)

Query: 151 NILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAH 210
           ++LR+M+ + + P V +++ +++       +E  +++ ++MK S    + V++ IL  A 
Sbjct: 163 SLLREMRRNSLMPDVFSYNTVIRGFCEGKELEKALELANEMKGSGCSWSLVTWGILIDAF 222

Query: 211 AVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKG----KDLERIWATVQEL-- 264
             A     A  +++ ++       +  L+  +++Y  L +G     +L+R  A   E+  
Sbjct: 223 CKAGKMDEAMGFLKEMK-------FMGLEADLVVYTSLIRGFCDCGELDRGKALFDEVLE 275

Query: 265 --PNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDK 322
              +  + +Y   I  F ++ Q+  A E++  M           Y  +I   C  G   +
Sbjct: 276 RGDSPCAITYNTLIRGFCKLGQLKEASEIFEFMIERGVRPNVYTYTGLIDGLCGVGKTKE 335

Query: 323 ASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLE 382
           A  LL  M     +PNA+TY  +     K  LV +  + +EL        K R + P   
Sbjct: 336 ALQLLNLMIEKDEEPNAVTYNIIINKLCKDGLVADAVEIVEL-------MKKRRTRPDNI 388

Query: 383 TTLSIIEIFAEKGDVGNAEN-LFEELKKANYTKYTFV-YNTLIKAYVK 428
           T   ++     KGD+  A   L+  LK ++YT    + YN LI    K
Sbjct: 389 TYNILLGGLCAKGDLDEASKLLYLMLKDSSYTDPDVISYNALIHGLCK 436


>gi|357137687|ref|XP_003570431.1| PREDICTED: pentatricopeptide repeat-containing protein At5g14770,
           mitochondrial-like [Brachypodium distachyon]
          Length = 938

 Score = 76.3 bits (186), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 78/336 (23%), Positives = 137/336 (40%), Gaps = 48/336 (14%)

Query: 123 VLGHSISYLVF-NRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNI 181
           +L  ++ Y VF N L +L    G+ K   + L +M++  + P   T++ ++  ++ +   
Sbjct: 555 LLPDAVVYNVFINCLCML----GKSKEAESFLEEMQSTGLKPDQVTYNTMIAAQSREGKT 610

Query: 182 EGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVL 241
              +K+ + MKRS ++PN ++Y                                STL V 
Sbjct: 611 AKALKLLNGMKRSSIKPNLITY--------------------------------STLIVG 638

Query: 242 IILYGYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQL 301
           +   G + K K L    ++    P   +   VL   + GR + +      W  M +    
Sbjct: 639 LFEAGAVEKAKYLLNEMSSSGFSPTSLTHRRVLQACSQGRRSDLILEIHEW--MMNAGLC 696

Query: 302 KATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKA 361
                YN+++ V C NG   KA  +L+EMS  G  P+ IT+  L LG FKS  ++  F  
Sbjct: 697 ADITVYNTLVRVLCYNGMTRKAMVVLEEMSGRGIAPDTITFNALILGHFKSGHLDNAFST 756

Query: 362 LELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNT 421
            +  +           +P + T  +++      G +G ++ +  E+KK         Y+ 
Sbjct: 757 YDQML-------YHGISPNVATFNTLLGGLESAGRIGESDMVLNEMKKRGIEPSNLTYDI 809

Query: 422 LIKAYVKA--KINDPNLLRRMILGGARPDAETYSLL 455
           L+  Y K   K+    L   M+  G  P   TY+ L
Sbjct: 810 LVTGYGKQSNKVEAVRLYCEMVGKGFLPKVSTYNAL 845



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 90/407 (22%), Positives = 176/407 (43%), Gaps = 67/407 (16%)

Query: 98  YNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMK 157
           +N+LV      G ++ +    ++M+  G  +  + +N L+      G      +++  MK
Sbjct: 177 WNSLVDGYCKVGDMETAFAVAERMKAQGVGVDVVGYNSLVAGLCRAGEVDAARDMVDTMK 236

Query: 158 ADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCIL----------A 207
            D V P+V T+ + +      + ++    +Y +M R  V P+ V+   L          +
Sbjct: 237 RDGVEPNVVTYTMFIVEYCRRNAVDDAFSLYEEMVRKGVLPDVVTLSALVGGLCKDGRFS 296

Query: 208 TAHAVAR-LYTVAE-----TY---VEALEKSMTGNNWSTL--DVL-------IILY---- 245
            A+A+ R +  +       TY   ++ L K+  GN   +L  +V+       +I+Y    
Sbjct: 297 EAYALFREMEKIGAAPNHVTYCMLIDTLAKAQRGNESLSLLGEVVSRGVVMDLIMYTALM 356

Query: 246 ------GYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVK 299
                 G + + KD+ R   +    PN    +Y + I+A  +   V  AE++  EM+   
Sbjct: 357 DWLCKEGKIDEAKDMFRHALSDNHTPN--GVTYTVLIDALCKAGNVDGAEQVLSEMEEKS 414

Query: 300 QLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGF 359
                  ++S+I+   K G++ KA+  ++EM   G  PN +TY  +  G FK  L +E  
Sbjct: 415 ISPNVVTFSSIINGLVKRGWVGKATDYMREMKERGIDPNVVTYGTVIDGSFKC-LGQEA- 472

Query: 360 KALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKK----ANYTKY 415
            AL++  +++  + V  +   ++   S++    + G +  AE LF E+ +     ++  Y
Sbjct: 473 -ALDVYHEML-CEGVEVNKFIVD---SLVNGLKKNGKIEKAEALFREMNERGVLLDHVNY 527

Query: 416 TFVYNTLIKA-------YVKAKINDPNLLRRMILGGARPDAETYSLL 455
           T + + L K         V  ++ + NLL         PDA  Y++ 
Sbjct: 528 TTLIDGLFKTGNLPAAFKVGQELTEKNLL---------PDAVVYNVF 565



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 81/390 (20%), Positives = 157/390 (40%), Gaps = 31/390 (7%)

Query: 33  INRLRKLQLNKRALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQGEKLFCCIPKDY 92
           IN L  L  +K A   +E  ++    +P ++ Y+ ++    +    ++  KL   + +  
Sbjct: 566 INCLCMLGKSKEAESFLEE-MQSTGLKPDQVTYNTMIAAQSREGKTAKALKLLNGMKRSS 624

Query: 93  --QNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIP 150
              N + Y+ L++   + G ++ +   + +M   G S + L   R++   S   R   I 
Sbjct: 625 IKPNLITYSTLIVGLFEAGAVEKAKYLLNEMSSSGFSPTSLTHRRVLQACSQGRRSDLIL 684

Query: 151 NILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAH 210
            I   M    +   ++ ++ L+++   +      M V  +M    + P+ +++  L   H
Sbjct: 685 EIHEWMMNAGLCADITVYNTLVRVLCYNGMTRKAMVVLEEMSGRGIAPDTITFNALILGH 744

Query: 211 -AVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRS 269
                L     TY + L   ++  N +T + L  L G  + G    RI  +   L  ++ 
Sbjct: 745 FKSGHLDNAFSTYDQMLYHGIS-PNVATFNTL--LGGLESAG----RIGESDMVLNEMKK 797

Query: 270 K-------SYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDK 322
           +       +Y + +  +G+ +    A  L+ EM     L     YN++IS + K G + +
Sbjct: 798 RGIEPSNLTYDILVTGYGKQSNKVEAVRLYCEMVGKGFLPKVSTYNALISDFSKVGMMSQ 857

Query: 323 ASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGM---KLITTKKVRSSTP 379
           A  L  EM   G  P + TY          +++  G+  L  G    K +   K +  +P
Sbjct: 858 AKELFNEMQNRGVLPTSCTY----------DILVSGWSKLRNGTEVRKFLKDMKEKGFSP 907

Query: 380 WLETTLSIIEIFAEKGDVGNAENLFEELKK 409
              T  SI   F++ G    A  L + L K
Sbjct: 908 SKGTLSSISRAFSKPGMSWEARRLLKNLYK 937


>gi|218195055|gb|EEC77482.1| hypothetical protein OsI_16315 [Oryza sativa Indica Group]
          Length = 455

 Score = 76.3 bits (186), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 76/362 (20%), Positives = 141/362 (38%), Gaps = 84/362 (23%)

Query: 96  LLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQ 155
           ++YN L+    D+G +  +L Y  +M   G +++   +N L+      GR      ++ +
Sbjct: 145 VMYNALIGGYCDQGKLDTALLYRDRMVERGVAMTVATYNLLVHALFMDGRGTEAYELVEE 204

Query: 156 MKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARL 215
           M    +AP V T++IL+     + N++  ++++ +M R  V    V+Y  L   +A+++ 
Sbjct: 205 MGGKGLAPDVFTYNILINGHCKEGNVKKALEIFENMSRRGVRATVVTYTSL--IYALSKK 262

Query: 216 YTVAET---YVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSKSY 272
             V ET   + EA+ + +  +        ++LY  L                        
Sbjct: 263 GQVQETDKLFDEAVRRGIRPD--------LVLYNAL------------------------ 290

Query: 273 VLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSM 332
              I +      + RA E+  EM+  +       YN+++   C  G +D+A  L+ EM+ 
Sbjct: 291 ---INSHSTSGNIDRAFEIMGEMEKKRIAPDDVTYNTLMRGLCLLGRVDEARKLIDEMTK 347

Query: 333 NGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFA 392
            G +P+ +TY  L  G                                          ++
Sbjct: 348 RGIQPDLVTYNTLISG------------------------------------------YS 365

Query: 393 EKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKINDP--NLLRRMILGGARPDAE 450
            KGDV +A  +  E+    +      YN LI+   K    D   N+++ M+  G  PD  
Sbjct: 366 MKGDVKDALRIRNEMMNKGFNPTLLTYNALIQGLCKNGQGDDAENMVKEMVENGITPDDS 425

Query: 451 TY 452
           TY
Sbjct: 426 TY 427


>gi|334183628|ref|NP_001185309.1| tetratricopeptide repeat-like protein [Arabidopsis thaliana]
 gi|193806276|sp|P0C7R3.1|PP106_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g64583, mitochondrial; Flags: Precursor
 gi|332196135|gb|AEE34256.1| tetratricopeptide repeat-like protein [Arabidopsis thaliana]
          Length = 512

 Score = 76.3 bits (186), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 84/373 (22%), Positives = 143/373 (38%), Gaps = 31/373 (8%)

Query: 117 YMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEA 176
           + +KM + G S     F  LI       R     ++L +M      P + TF  L+    
Sbjct: 93  FSQKMELYGISHDLYSFTILIHCFCRCSRLSFALSVLGKMMKLGYEPSIVTFGSLLHGFC 152

Query: 177 NDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWS 236
             + I     +   M +S  EPN V Y  L           +A   +  +EK   G +  
Sbjct: 153 LVNRIGDAFSLVILMVKSGYEPNVVVYNTLIDGLCKNGELNIALELLNEMEKKGLGADVV 212

Query: 237 TLDVLIILYGYLAKGKDLERIWATVQELP-NVRSKSYVLAIEAFGRIAQVSRAEELWLEM 295
           T + L+    Y  +  D  R+   + +   N    ++   I+ F +   +  A+EL+ EM
Sbjct: 213 TYNTLLTGLCYSGRWSDAARMLRDMMKRSINPDVVTFTALIDVFVKQGNLDEAQELYKEM 272

Query: 296 QSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLV 355
                      YNS+I+  C +G +  A      M+  GC PN +TY  L  G  K  +V
Sbjct: 273 IQSSVDPNNVTYNSIINGLCMHGRLYDAKKTFDLMASKGCFPNVVTYNTLISGFCKFRMV 332

Query: 356 EEGFK----------------------------ALELGMKLITTKKVRSSTPWLETTLSI 387
           +EG K                             L + + +      R  TP + T   +
Sbjct: 333 DEGMKLFQRMSCEGFNADIFTYNTLIHGYCQVGKLRVALDIFCWMVSRRVTPDIITHCIL 392

Query: 388 IEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKA-KINDP-NLLRRMILGGA 445
           +      G++ +A   F++++++        YN +I    KA K+     L  R+ + G 
Sbjct: 393 LHGLCVNGEIESALVKFDDMRESEKYIGIVAYNIMIHGLCKADKVEKAWELFCRLPVEGV 452

Query: 446 RPDAETYSLLKLA 458
           +PDA TY+++ L 
Sbjct: 453 KPDARTYTIMILG 465



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 77/365 (21%), Positives = 142/365 (38%), Gaps = 46/365 (12%)

Query: 29  IFHSINRLRKLQLNKRALEVMEWVIRERPYRPKELDYSYLLE-FTIKNHGISQGEKLFCC 87
           + H   R  +L     AL V+  +++   Y P  + +  LL  F + N        +   
Sbjct: 112 LIHCFCRCSRLSF---ALSVLGKMMK-LGYEPSIVTFGSLLHGFCLVNRIGDAFSLVILM 167

Query: 88  IPKDYQ-NELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRR 146
           +   Y+ N ++YN L+      G + ++LE + +M   G     + +N L+      GR 
Sbjct: 168 VKSGYEPNVVVYNTLIDGLCKNGELNIALELLNEMEKKGLGADVVTYNTLLTGLCYSGRW 227

Query: 147 KTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSY-CI 205
                +LR M    + P V TF  L+ +     N++   ++Y +M +S V+PN V+Y  I
Sbjct: 228 SDAARMLRDMMKRSINPDVVTFTALIDVFVKQGNLDEAQELYKEMIQSSVDPNNVTYNSI 287

Query: 206 LATAHAVARLYTVAETYVEALEK--------------------------------SMTGN 233
           +       RLY   +T+     K                                S  G 
Sbjct: 288 INGLCMHGRLYDAKKTFDLMASKGCFPNVVTYNTLISGFCKFRMVDEGMKLFQRMSCEGF 347

Query: 234 NWSTLDVLIILYGYLAKGK-----DLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRA 288
           N        +++GY   GK     D+     + +  P++   ++ + +       ++  A
Sbjct: 348 NADIFTYNTLIHGYCQVGKLRVALDIFCWMVSRRVTPDI--ITHCILLHGLCVNGEIESA 405

Query: 289 EELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALG 348
              + +M+  ++      YN +I   CK   ++KA  L   + + G KP+A TY  + LG
Sbjct: 406 LVKFDDMRESEKYIGIVAYNIMIHGLCKADKVEKAWELFCRLPVEGVKPDARTYTIMILG 465

Query: 349 CFKSN 353
             K+ 
Sbjct: 466 LCKNG 470



 Score = 60.8 bits (146), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 64/284 (22%), Positives = 123/284 (43%), Gaps = 16/284 (5%)

Query: 179 HNI--EGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWS 236
           H+I  E    ++ +M  S+  P+ V +  L TA A  R Y     + + +E     ++  
Sbjct: 48  HSIRFEDAFALFFEMVHSQPLPSIVDFTRLLTATANLRRYETVIYFSQKMELYGISHDLY 107

Query: 237 TLDVLIILYGYLAKGKDLERIWATVQEL---PNVRSKSYVLAIEAFGRIAQVSRAEELWL 293
           +  +LI  +   ++      +   + +L   P++ +   +L    F  + ++  A  L +
Sbjct: 108 SFTILIHCFCRCSRLSFALSVLGKMMKLGYEPSIVTFGSLL--HGFCLVNRIGDAFSLVI 165

Query: 294 EMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSN 353
            M           YN++I   CKNG ++ A  LL EM   G   + +TY  L  G   S 
Sbjct: 166 LMVKSGYEPNVVVYNTLIDGLCKNGELNIALELLNEMEKKGLGADVVTYNTLLTGLCYSG 225

Query: 354 LVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYT 413
              +  + L   MK       RS  P + T  ++I++F ++G++  A+ L++E+ +++  
Sbjct: 226 RWSDAARMLRDMMK-------RSINPDVVTFTALIDVFVKQGNLDEAQELYKEMIQSSVD 278

Query: 414 KYTFVYNTLIKAY-VKAKINDP-NLLRRMILGGARPDAETYSLL 455
                YN++I    +  ++ D       M   G  P+  TY+ L
Sbjct: 279 PNNVTYNSIINGLCMHGRLYDAKKTFDLMASKGCFPNVVTYNTL 322


>gi|414872432|tpg|DAA50989.1| TPA: hypothetical protein ZEAMMB73_390723 [Zea mays]
          Length = 604

 Score = 75.9 bits (185), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 79/366 (21%), Positives = 150/366 (40%), Gaps = 18/366 (4%)

Query: 98  YNNLVIACLDKGVIKLSLEYMKKMRVLGHSI-SYLVFNRLIILNSSPGRRKTIPNILRQM 156
           YN+++I  + +G  +   +   +M   GH     + ++ LI      GRR +   +L +M
Sbjct: 164 YNSMIIMLMHEGQYEKVHQLYNEMSTEGHCFPDTVTYSALISAFCKLGRRDSAIQLLNEM 223

Query: 157 KADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLY 216
           K   + P    + +L+ +    ++  G + ++ +M+     P+  +Y  L     + +  
Sbjct: 224 KEIGMQPTTKIYTMLIALFFKFNDAHGALSLFEEMRHQYCRPDVFTYTEL--IRGLGKAG 281

Query: 217 TVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSKSYVLAI 276
            + E Y    E    G    T+  +  +  +L K   L+      QE+  +R    V+  
Sbjct: 282 RIDEAYHFFCEMQREGCRPDTV-FMNNMINFLGKAGRLDDAMKLFQEMETLRCIPSVVTY 340

Query: 277 EAFGR--IAQVSRAEEL--WLE-MQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMS 331
               +      SRA E+  W E M+      ++  Y+ +I  +CK   ++KA  LL+EM 
Sbjct: 341 NTIIKALFESKSRASEVPSWFERMKESGISPSSFTYSILIDGFCKTNRMEKAMMLLEEMD 400

Query: 332 MNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIF 391
             G  P    Y  L     K+       K  +L  +L    K    +        +I+  
Sbjct: 401 EKGFPPCPAAYCSLIDALGKA-------KRYDLACELFQELKENCGSSSARVYAVMIKHL 453

Query: 392 AEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKINDPNL--LRRMILGGARPDA 449
            + G + +A N+F+E+ K       + YN L+    +  + D  L  +RRM   G  PD 
Sbjct: 454 GKAGRLDDAINMFDEMNKLGCAPDVYAYNALMSGLARTGMLDEALSTMRRMQEHGCIPDI 513

Query: 450 ETYSLL 455
            +Y+++
Sbjct: 514 NSYNII 519



 Score = 68.6 bits (166), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 70/383 (18%), Positives = 150/383 (39%), Gaps = 52/383 (13%)

Query: 53  IRERPYRPKELDYSYLLEFTIKNHGISQGEKLFC------CIPKDYQNELLYNNLVIACL 106
           +R +  RP    Y+ L+    K   I +    FC      C P    + +  NN++    
Sbjct: 258 MRHQYCRPDVFTYTELIRGLGKAGRIDEAYHFFCEMQREGCRP----DTVFMNNMINFLG 313

Query: 107 DKGVIKLSLEYMKKMRVLGHSISYLVFNRLI-ILNSSPGRRKTIPNILRQMKADKVAPHV 165
             G +  +++  ++M  L    S + +N +I  L  S  R   +P+   +MK   ++P  
Sbjct: 314 KAGRLDDAMKLFQEMETLRCIPSVVTYNTIIKALFESKSRASEVPSWFERMKESGISPSS 373

Query: 166 STFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEA 225
            T+ IL+      + +E  M +  +M      P   +YC L  A   A+ Y +A    + 
Sbjct: 374 FTYSILIDGFCKTNRMEKAMMLLEEMDEKGFPPCPAAYCSLIDALGKAKRYDLACELFQE 433

Query: 226 LEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQV 285
           L+++   ++                                  ++ Y + I+  G+  ++
Sbjct: 434 LKENCGSSS----------------------------------ARVYAVMIKHLGKAGRL 459

Query: 286 SRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHL 345
             A  ++ EM  +        YN+++S   + G +D+A   ++ M  +GC P+  +Y  +
Sbjct: 460 DDAINMFDEMNKLGCAPDVYAYNALMSGLARTGMLDEALSTMRRMQEHGCIPDINSYNII 519

Query: 346 ALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFE 405
             G  K+             M++++  K  +  P + +  +++   +  G    A  L +
Sbjct: 520 LNGLAKTG-------GPHRAMEMLSNMKQSTVRPDVVSYNTVLGALSHAGMFEEASKLMK 572

Query: 406 ELKKANYTKYTFVYNTLIKAYVK 428
           E+    +      Y+++++A  K
Sbjct: 573 EMNTLGFEYDLITYSSILEAIGK 595



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 52/206 (25%), Positives = 87/206 (42%), Gaps = 27/206 (13%)

Query: 257 IWATVQELPNVRSKSYVLA-------IEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNS 309
           +W  +QE+  VR+   V+        +   G    V +A  ++ ++++ K     + YNS
Sbjct: 109 MWKMIQEM--VRNPICVVTPTELSDVVRMLGNAKMVRQAITIFYQIKTRKCQPIAQAYNS 166

Query: 310 VISVYCKNGFIDKASGLLKEMSMNG-CKPNAITYRHLALGCFKSNLVEEGFKAL----EL 364
           +I +    G  +K   L  EMS  G C P+ +TY  L     K    +   + L    E+
Sbjct: 167 MIIMLMHEGQYEKVHQLYNEMSTEGHCFPDTVTYSALISAFCKLGRRDSAIQLLNEMKEI 226

Query: 365 GMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIK 424
           GM+           P  +    +I +F +  D   A +LFEE++        F Y  LI+
Sbjct: 227 GMQ-----------PTTKIYTMLIALFFKFNDAHGALSLFEEMRHQYCRPDVFTYTELIR 275

Query: 425 AYVKA-KINDP-NLLRRMILGGARPD 448
              KA +I++  +    M   G RPD
Sbjct: 276 GLGKAGRIDEAYHFFCEMQREGCRPD 301



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 67/332 (20%), Positives = 135/332 (40%), Gaps = 21/332 (6%)

Query: 131 LVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSD 190
             +  LI      GR     +   +M+ +   P     + ++        ++  MK++ +
Sbjct: 268 FTYTELIRGLGKAGRIDEAYHFFCEMQREGCRPDTVFMNNMINFLGKAGRLDDAMKLFQE 327

Query: 191 MKRSEVEPNEVSY--CILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYL 248
           M+     P+ V+Y   I A   + +R   V  ++ E +++S  G + S+    I++ G+ 
Sbjct: 328 METLRCIPSVVTYNTIIKALFESKSRASEVP-SWFERMKES--GISPSSFTYSILIDGF- 383

Query: 249 AKGKDLERIWATVQEL-----PNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKA 303
            K   +E+    ++E+     P   + +Y   I+A G+  +   A EL+ E++      +
Sbjct: 384 CKTNRMEKAMMLLEEMDEKGFPPCPA-AYCSLIDALGKAKRYDLACELFQELKENCGSSS 442

Query: 304 TEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALE 363
              Y  +I    K G +D A  +  EM+  GC P+   Y  L  G  ++ +++E    + 
Sbjct: 443 ARVYAVMIKHLGKAGRLDDAINMFDEMNKLGCAPDVYAYNALMSGLARTGMLDEALSTMR 502

Query: 364 LGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLI 423
                    +     P + +   I+   A+ G    A  +   +K++        YNT++
Sbjct: 503 -------RMQEHGCIPDINSYNIILNGLAKTGGPHRAMEMLSNMKQSTVRPDVVSYNTVL 555

Query: 424 KAYVKAKIND--PNLLRRMILGGARPDAETYS 453
            A   A + +    L++ M   G   D  TYS
Sbjct: 556 GALSHAGMFEEASKLMKEMNTLGFEYDLITYS 587


>gi|255661190|gb|ACU25764.1| pentatricopeptide repeat-containing protein [Dipyrena glaberrima]
          Length = 426

 Score = 75.9 bits (185), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 76/322 (23%), Positives = 151/322 (46%), Gaps = 22/322 (6%)

Query: 98  YNNLVIACLDKGVIKLSLEYMKKM---RVLGHSISYLVFNRLIILNSSPGRRKTIPNILR 154
           Y+ L+     +G+   +L +++KM   RV G  + Y   + LI L+          +I  
Sbjct: 12  YSTLITHFGKEGLFDAALAWLQKMEQDRVPGDLVLY---SNLIELSRKLCDYSKAISIFS 68

Query: 155 QMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVAR 214
           ++K    +P +  ++ ++ +            + S+M+ + V PN VSY  L T +   +
Sbjct: 69  RLKRSGFSPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVMPNTVSYSTLLTMYVENK 128

Query: 215 LYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQEL---PNVRSKS 271
            +  A T    + +     + +T +++I +YG L   K+ ++++  ++++   PNV S +
Sbjct: 129 KFLEALTVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYN 188

Query: 272 YVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMS 331
            +L +  +G       A  L+  MQ     +    YNS++ +Y K    +KA+ L++EM 
Sbjct: 189 TLLRV--YGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQ 246

Query: 332 MNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTL--SIIE 389
             G +PN+ITY         S ++    K  +L    +  +K+RSS   ++  L  ++I 
Sbjct: 247 SRGIEPNSITY---------STIISIWSKIGKLDRAAMLFQKLRSSGVEIDQVLYQTMIV 297

Query: 390 IFAEKGDVGNAENLFEELKKAN 411
            +   G V +A+ L  ELK+ +
Sbjct: 298 AYERAGLVAHAKRLLHELKRPD 319



 Score = 43.1 bits (100), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 34/127 (26%), Positives = 58/127 (45%), Gaps = 11/127 (8%)

Query: 307 YNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGM 366
           YN++I+V+ K     +A  L+ EM   G  PN ++Y  L        +  E  K LE   
Sbjct: 82  YNAMINVFGKAKLFREARSLISEMRTAGVMPNTVSYSTLL------TMYVENKKFLE--- 132

Query: 367 KLITTKKVRSSTPWLETTLS--IIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIK 424
            L    ++R     L+ T    +I+++ + G    A+ LF  ++K         YNTL++
Sbjct: 133 ALTVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTLLR 192

Query: 425 AYVKAKI 431
            Y  A++
Sbjct: 193 VYGDAEL 199



 Score = 39.3 bits (90), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 46/245 (18%), Positives = 104/245 (42%), Gaps = 9/245 (3%)

Query: 94  NELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNIL 153
           N + YN L+    D  +   ++   + M+      + + +N ++++       +   N++
Sbjct: 183 NVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLI 242

Query: 154 RQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVA 213
           ++M++  + P+  T+  ++ I +    ++    ++  ++ S VE ++V Y  +  A+  A
Sbjct: 243 QEMQSRGIEPNSITYSTIISIWSKIGKLDRAAMLFQKLRSSGVEIDQVLYQTMIVAYERA 302

Query: 214 RLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSKSYV 273
            L   A+  +  L++    +N      + IL G    G+  E  W   Q +     K   
Sbjct: 303 GLVAHAKRLLHELKRP---DNIPRDTAIHILAG---SGRIEEATWVFRQAIDAGEVKDIT 356

Query: 274 L---AIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEM 330
           +    I  F +  + S   E++ +M+ +     +     V++ Y K    DKA+ +  EM
Sbjct: 357 VFERMIHLFSKYKKYSNVVEVFDKMRGLGYFPDSNVTALVLNAYGKLHEFDKANNVYIEM 416

Query: 331 SMNGC 335
              GC
Sbjct: 417 QDEGC 421


>gi|22093673|dbj|BAC06967.1| crp1-like protein [Oryza sativa Japonica Group]
 gi|50510048|dbj|BAD30673.1| crp1-like protein [Oryza sativa Japonica Group]
          Length = 912

 Score = 75.9 bits (185), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 76/334 (22%), Positives = 137/334 (41%), Gaps = 14/334 (4%)

Query: 98  YNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMK 157
           YN ++      G +K +++    M   G +     FN LI +  S G  K    +   M 
Sbjct: 268 YNTMIDLYGKAGKLKDAMDMFMGMPDYGVAADTCTFNTLINIFGSCGNVKEAEALFASMI 327

Query: 158 ADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYT 217
                P V TF+++M + A+  ++EG++K Y  + +  +  + VSY I+       ++  
Sbjct: 328 VRGTNPDVKTFNVMMTLFASKGDVEGVLKHYYHIGKMGLSADTVSYGIVLRVLCERKMVH 387

Query: 218 VAETYVEALEKSMTGNNWSTLDVLIILY---GYLAKGKDLERIWATVQELPNVRSKSYVL 274
            AE  +  + +S T     +L V++ +Y   G L K            E   V SK++  
Sbjct: 388 EAEDVIVGIMRSGTCVPEQSLPVVMKMYIDQGLLDKANAFFDRHCRGDE---VSSKTFAA 444

Query: 275 AIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNG 334
            ++AF        AE ++   + V++ +   +YN ++  Y      D+ S LL+ M+ +G
Sbjct: 445 IMDAFAERGLWEEAEHVFYSHRGVRR-RGIVEYNVMVKAYGAAKRYDRVSPLLEHMNESG 503

Query: 335 CKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEK 394
             P+  T+  L            G+   +   KL+   K     P  ET  + I   +  
Sbjct: 504 ISPDECTFNSLV-----QMFATGGYP--QRAKKLLGKMKYAGFKPKCETYAAAITTLSRN 556

Query: 395 GDVGNAENLFEELKKANYTKYTFVYNTLIKAYVK 428
             V  A  L+ E+K +       VY  LI  + +
Sbjct: 557 YLVSEAIYLYNEMKASGVEPNVVVYGVLIDTFAE 590



 Score = 51.6 bits (122), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 49/236 (20%), Positives = 108/236 (45%), Gaps = 7/236 (2%)

Query: 118 MKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEAN 177
           ++ M   G S     FN L+ + ++ G  +    +L +MK     P   T+   +   + 
Sbjct: 496 LEHMNESGISPDECTFNSLVQMFATGGYPQRAKKLLGKMKYAGFKPKCETYAAAITTLSR 555

Query: 178 DHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWST 237
           ++ +   + +Y++MK S VEPN V Y +L    A       A  Y   +E+S    N   
Sbjct: 556 NYLVSEAIYLYNEMKASGVEPNVVVYGVLIDTFAETGQLEEALHYNNLMEESGIAPNQIV 615

Query: 238 LDVLIILYGYLAKGKDLERIWATVQEL---PNVRSKSYVLAIEAFGRIAQVSRAEELWLE 294
           L  LI  Y      K+ + +++ ++ +   P++ + + +L +  +  +  V++ +E++  
Sbjct: 616 LTSLIKAYSKANCWKEAQDLYSRMKSMDGGPDIVASNSMLNL--YANLGMVTKVKEIFDC 673

Query: 295 MQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCF 350
           ++   Q      Y S+IS+Y   G ++++  +  ++  +G   +  +Y  + + CF
Sbjct: 674 LRRNNQADDV-SYTSMISLYKNMGLLNESVRVAHDLQNSGLLSDCASYNAV-MACF 727



 Score = 48.9 bits (115), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 61/300 (20%), Positives = 120/300 (40%), Gaps = 11/300 (3%)

Query: 155 QMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVAR 214
           +MKA  V P+V  + +L+   A    +E  +   + M+ S + PN++    L  A++ A 
Sbjct: 568 EMKASGVEPNVVVYGVLIDTFAETGQLEEALHYNNLMEESGIAPNQIVLTSLIKAYSKAN 627

Query: 215 LYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSKSYVL 274
            +  A+     ++    G +    + ++ LY  L     ++ I+  ++        SY  
Sbjct: 628 CWKEAQDLYSRMKSMDGGPDIVASNSMLNLYANLGMVTKVKEIFDCLRRNNQADDVSYTS 687

Query: 275 AIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNG 334
            I  +  +  ++ +  +  ++Q+   L     YN+V++ +   G + + + L+++M    
Sbjct: 688 MISLYKNMGLLNESVRVAHDLQNSGLLSDCASYNAVMACFVAKGKLRECAELVQQMQEGN 747

Query: 335 CKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEK 394
             P+A T+  +     K  +  E    L+           RSS+    +   I  +F   
Sbjct: 748 ILPDASTFGMIFSIMKKIQIAPEEVSQLQSAY-----NDNRSSS----SQAVIAFLFLIA 798

Query: 395 GDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKINDP--NLLRRMILGGARPDAETY 452
           G    A N+ E+  K   T      N   K Y      D   +L  +M   G +PD  TY
Sbjct: 799 GMHAAALNICEKYMKPVLTIDQCACNVAFKVYASCGEVDKAFSLFMQMHELGLKPDTATY 858



 Score = 38.9 bits (89), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 60/304 (19%), Positives = 126/304 (41%), Gaps = 40/304 (13%)

Query: 94  NELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNIL 153
           N ++Y  L+    + G ++ +L Y   M   G + + +V   LI   S     K   ++ 
Sbjct: 577 NVVVYGVLIDTFAETGQLEEALHYNNLMEESGIAPNQIVLTSLIKAYSKANCWKEAQDLY 636

Query: 154 RQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVA 213
            +MK+    P +   + ++ + AN   +  + +++  ++R+  + ++VSY  + + +   
Sbjct: 637 SRMKSMDGGPDIVASNSMLNLYANLGMVTKVKEIFDCLRRNN-QADDVSYTSMISLYKNM 695

Query: 214 RLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGK--DLERIWATVQE---LPNVR 268
            L   +      L+ S   ++ ++ +   ++  ++AKGK  +   +   +QE   LP+  
Sbjct: 696 GLLNESVRVAHDLQNSGLLSDCASYNA--VMACFVAKGKLRECAELVQQMQEGNILPDAS 753

Query: 269 SKSYVLAIEAFGRIA--QVSRAEELWLEMQS-----------------VKQLKATEQY-- 307
           +   + +I    +IA  +VS+ +  + + +S                    L   E+Y  
Sbjct: 754 TFGMIFSIMKKIQIAPEEVSQLQSAYNDNRSSSSQAVIAFLFLIAGMHAAALNICEKYMK 813

Query: 308 ----------NSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEE 357
                     N    VY   G +DKA  L  +M   G KP+  TY HL   C+    +  
Sbjct: 814 PVLTIDQCACNVAFKVYASCGEVDKAFSLFMQMHELGLKPDTATYIHLTT-CYGEYGMPG 872

Query: 358 GFKA 361
           G ++
Sbjct: 873 GLRS 876


>gi|125592120|gb|EAZ32470.1| hypothetical protein OsJ_16686 [Oryza sativa Japonica Group]
          Length = 879

 Score = 75.9 bits (185), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 68/309 (22%), Positives = 132/309 (42%), Gaps = 18/309 (5%)

Query: 127 SISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMK 186
           S++ ++++ +I  +   G  +    ++R+M+ D +   +  +H +M       N    + 
Sbjct: 344 SLNGIIYSNIIHAHCQSGNMERAEELVREMEEDGIDAPIDVYHSMMHGYTIIQNENKCLV 403

Query: 187 VYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYG 246
           V+  +K    +P+ +SY  L   +        A +  + +E     +N  T  +LI  + 
Sbjct: 404 VFERLKECGFKPSIISYGCLLNLYVKIGKVAKALSISKEMESCGIKHNNKTYSMLINGFI 463

Query: 247 YLAKGKDLERIWATVQELPNVRS------KSYVLAIEAFGRIAQVSRAEELWLEMQSVKQ 300
           +L    D    +A  +E+  +RS        Y L IEAF ++  + RA  +  +MQ  + 
Sbjct: 464 HL---HDFANAFAIFEEM--LRSGLQPDRAIYNLLIEAFCKMGNMDRAICILEKMQKERM 518

Query: 301 LKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFK 360
             +   +  +I  Y   G +  A   L  M  +GC P  +TY  L  G  + + V+    
Sbjct: 519 QPSNRAFRPIIEGYAVAGDMKSALDTLDLMRRSGCVPTVMTYNALIHGLVRKHKVQRAVS 578

Query: 361 ALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYN 420
            L+          +   TP   T   I+  +A  GD+G A   F ++K++      ++Y 
Sbjct: 579 VLD-------KMSIAGITPNEHTYTIIMRGYAASGDIGKAFEYFTKIKESGLKLDVYIYE 631

Query: 421 TLIKAYVKA 429
           TL++A  K+
Sbjct: 632 TLLRACCKS 640



 Score = 68.9 bits (167), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 74/298 (24%), Positives = 125/298 (41%), Gaps = 12/298 (4%)

Query: 94  NELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNIL 153
           +  +YN L+ A    G +  ++  ++KM+      S   F  +I   +  G  K+  + L
Sbjct: 486 DRAIYNLLIEAFCKMGNMDRAICILEKMQKERMQPSNRAFRPIIEGYAVAGDMKSALDTL 545

Query: 154 RQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVA 213
             M+     P V T++ L+      H ++  + V   M  + + PNE +Y I+   +A +
Sbjct: 546 DLMRRSGCVPTVMTYNALIHGLVRKHKVQRAVSVLDKMSIAGITPNEHTYTIIMRGYAAS 605

Query: 214 RLYTVAETYVEALEKSMTGNNWSTLDVLI--ILYGYLAKGKDLERIWATVQELPNVRSKS 271
                A  Y   +++S        LDV I   L     K   ++   A  +E+   +   
Sbjct: 606 GDIGKAFEYFTKIKESGL-----KLDVYIYETLLRACCKSGRMQSALAVTREMSFQKIPR 660

Query: 272 ----YVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLL 327
               Y + I+ + R   V  AE+L  +M+          Y S I+  CK G + +A  ++
Sbjct: 661 NTFIYNILIDGWARRGDVWEAEDLMKQMKEDGVPPNIHTYTSYINACCKAGDMQRAEKVI 720

Query: 328 KEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTL 385
           +EM   G KPN  TY  L  G  + +L +   K  E  MKL   K   +S   L T+L
Sbjct: 721 EEMVDVGLKPNVKTYTTLIKGWARVSLPDRALKCFE-EMKLAGLKPDEASYHCLVTSL 777



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 95/437 (21%), Positives = 171/437 (39%), Gaps = 55/437 (12%)

Query: 28  EIFHSINRLRKLQLNKRALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQGEKLFCC 87
           +++HS+     +  N+    V+   ++E  ++P  + Y  LL   +K   +++       
Sbjct: 383 DVYHSMMHGYTIIQNENKCLVVFERLKECGFKPSIISYGCLLNLYVKIGKVAKA----LS 438

Query: 88  IPKDYQN-ELLYNNLVIACLDKGVIKL-----SLEYMKKMRVLGHSISYLVFNRLIILNS 141
           I K+ ++  + +NN   + L  G I L     +    ++M   G      ++N LI    
Sbjct: 439 ISKEMESCGIKHNNKTYSMLINGFIHLHDFANAFAIFEEMLRSGLQPDRAIYNLLIEAFC 498

Query: 142 SPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEV 201
             G       IL +M+ +++ P    F  +++  A   +++  +     M+RS   P  +
Sbjct: 499 KMGNMDRAICILEKMQKERMQPSNRAFRPIIEGYAVAGDMKSALDTLDLMRRSGCVPTVM 558

Query: 202 SYCILATAHAVARLYTVAETYVEALEK-SMTGNNWSTLDVLIILYGYLAKGKDLERIWAT 260
           +Y  L   H + R + V +  V  L+K S+ G   +     II+ GY A G D+ +    
Sbjct: 559 TYNALI--HGLVRKHKV-QRAVSVLDKMSIAGITPNEHTYTIIMRGYAASG-DIGK---- 610

Query: 261 VQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFI 320
                         A E F +I +     ++++             Y +++   CK+G +
Sbjct: 611 --------------AFEYFTKIKESGLKLDVYI-------------YETLLRACCKSGRM 643

Query: 321 DKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPW 380
             A  + +EMS      N   Y  L  G  +   V E          L+   K     P 
Sbjct: 644 QSALAVTREMSFQKIPRNTFIYNILIDGWARRGDVWEA-------EDLMKQMKEDGVPPN 696

Query: 381 LETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKINDPNL--LR 438
           + T  S I    + GD+  AE + EE+           Y TLIK + +  + D  L    
Sbjct: 697 IHTYTSYINACCKAGDMQRAEKVIEEMVDVGLKPNVKTYTTLIKGWARVSLPDRALKCFE 756

Query: 439 RMILGGARPDAETYSLL 455
            M L G +PD  +Y  L
Sbjct: 757 EMKLAGLKPDEASYHCL 773



 Score = 50.1 bits (118), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 77/366 (21%), Positives = 141/366 (38%), Gaps = 55/366 (15%)

Query: 133 FNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMK 192
           F  +I+  +  G +         M+A  + P+   F  L+   A   ++ G +    +MK
Sbjct: 245 FGLMIVYYAKRGDKHHARATFENMRARGIEPNAFVFTSLVHAYAVARDMRGALSCVEEMK 304

Query: 193 RSEVEPNEVSYCILATAHA-------VARLYTVAETYVEALE----------KSMTGN-- 233
              +E   V+Y IL +  A          L+  A+T + +L              +GN  
Sbjct: 305 SEGLELTIVTYSILISGFAKINDSQSADNLFKEAKTKLSSLNGIIYSNIIHAHCQSGNME 364

Query: 234 ---------NWSTLDVLIILYGYLAKG----KDLERIWATVQELPNVRSK----SYVLAI 276
                        +D  I +Y  +  G    ++  +     + L     K    SY   +
Sbjct: 365 RAEELVREMEEDGIDAPIDVYHSMMHGYTIIQNENKCLVVFERLKECGFKPSIISYGCLL 424

Query: 277 EAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFID-----KASGLLKEMS 331
             + +I +V++A  +  EM+S       + Y+ +I     NGFI       A  + +EM 
Sbjct: 425 NLYVKIGKVAKALSISKEMESCGIKHNNKTYSMLI-----NGFIHLHDFANAFAIFEEML 479

Query: 332 MNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIF 391
            +G +P+   Y  L     K   ++     LE   K       R+  P       IIE +
Sbjct: 480 RSGLQPDRAIYNLLIEAFCKMGNMDRAICILEKMQKERMQPSNRAFRP-------IIEGY 532

Query: 392 AEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYV-KAKINDP-NLLRRMILGGARPDA 449
           A  GD+ +A +  + ++++        YN LI   V K K+    ++L +M + G  P+ 
Sbjct: 533 AVAGDMKSALDTLDLMRRSGCVPTVMTYNALIHGLVRKHKVQRAVSVLDKMSIAGITPNE 592

Query: 450 ETYSLL 455
            TY+++
Sbjct: 593 HTYTII 598



 Score = 38.9 bits (89), Expect = 5.8,   Method: Compositional matrix adjust.
 Identities = 31/128 (24%), Positives = 59/128 (46%), Gaps = 3/128 (2%)

Query: 82  EKLFCCIPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNS 141
           E  F  IP+   N  +YN L+     +G +  + + MK+M+  G   +   +   I    
Sbjct: 652 EMSFQKIPR---NTFIYNILIDGWARRGDVWEAEDLMKQMKEDGVPPNIHTYTSYINACC 708

Query: 142 SPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEV 201
             G  +    ++ +M    + P+V T+  L+K  A     +  +K + +MK + ++P+E 
Sbjct: 709 KAGDMQRAEKVIEEMVDVGLKPNVKTYTTLIKGWARVSLPDRALKCFEEMKLAGLKPDEA 768

Query: 202 SYCILATA 209
           SY  L T+
Sbjct: 769 SYHCLVTS 776


>gi|255661186|gb|ACU25762.1| pentatricopeptide repeat-containing protein [Xeroaloysia
           ovatifolia]
          Length = 426

 Score = 75.9 bits (185), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 75/322 (23%), Positives = 151/322 (46%), Gaps = 22/322 (6%)

Query: 98  YNNLVIACLDKGVIKLSLEYMKKM---RVLGHSISYLVFNRLIILNSSPGRRKTIPNILR 154
           Y+ L+     +G+   +L +++KM   RV G  + Y   + LI L+          +I  
Sbjct: 12  YSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLY---SNLIELSRKLCDYSKAISIFS 68

Query: 155 QMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVAR 214
           ++K     P +  ++ ++ +            + S+M+ + V PN  SY  L T +   +
Sbjct: 69  RLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVMPNTASYTTLLTMYVENK 128

Query: 215 LYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQEL---PNVRSKS 271
            +  A +    + +     + +T +++I +YG L   K+ ++++  ++++   PNV S +
Sbjct: 129 KFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYN 188

Query: 272 YVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMS 331
            +L +  +G       A  L+  MQ    ++    YNS++ +Y K    +KA+ L++EM 
Sbjct: 189 TLLRV--YGDAELFGEAIHLFRLMQRKNIVQNVVTYNSMMMIYGKTLEHEKANNLIQEMQ 246

Query: 332 MNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTL--SIIE 389
             G +PN+ITY         S ++    KA +L    +  +K+RSS   ++  L  ++I 
Sbjct: 247 NRGIEPNSITY---------STIISIWGKAGKLDRAAMLFQKLRSSGVEIDQVLYQTMIV 297

Query: 390 IFAEKGDVGNAENLFEELKKAN 411
            + + G V +A+ L  ELK  +
Sbjct: 298 AYEKAGLVAHAKRLLHELKSPD 319



 Score = 40.8 bits (94), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 34/127 (26%), Positives = 57/127 (44%), Gaps = 11/127 (8%)

Query: 307 YNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGM 366
           YN++I+V+ K     +A  L+ EM   G  PN  +Y  L        +  E  K LE   
Sbjct: 82  YNAMINVFGKAKLFREARSLISEMRTAGVMPNTASYTTLL------TMYVENKKFLE--- 132

Query: 367 KLITTKKVRSSTPWLETTLS--IIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIK 424
            L    ++R     L+ T    +I+++ + G    A+ LF  ++K         YNTL++
Sbjct: 133 ALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTLLR 192

Query: 425 AYVKAKI 431
            Y  A++
Sbjct: 193 VYGDAEL 199


>gi|414887392|tpg|DAA63406.1| TPA: hypothetical protein ZEAMMB73_124662 [Zea mays]
          Length = 795

 Score = 75.9 bits (185), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 72/339 (21%), Positives = 142/339 (41%), Gaps = 43/339 (12%)

Query: 93  QNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNI 152
           ++   YN L+  C  +G+ + + +   +M+  G     + FN L+ +     + +    +
Sbjct: 253 RDRYTYNTLISCCRRRGLHREAAQVFDEMKAAGFEPDKVTFNSLLDVYGKARKHEEAIGV 312

Query: 153 LRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATA-HA 211
           L++M+     P V T++ L+     D  +E  +++  +M+   ++P+ V+Y  L +    
Sbjct: 313 LKRMENAGCTPSVVTYNSLISAYVKDGLLEEALELKQEMEFRGMKPDVVTYTTLISGLDR 372

Query: 212 VARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSKS 271
           V ++     TY E +    +  N  T + LI L+G   K  ++  ++       ++RS  
Sbjct: 373 VGKIDAALATYSEMVRNGCS-PNLCTYNALIKLHGVRGKFTEMMAVFD------DLRSAG 425

Query: 272 YVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMS 331
           YV  +                              +N+++SV+ +NG   + SG+ KEM 
Sbjct: 426 YVPDVVT----------------------------WNTLLSVFGQNGLDSEVSGVFKEMK 457

Query: 332 MNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIF 391
             G  P   TY  L     +  L ++   A+E+  ++I         P + T  +++   
Sbjct: 458 KAGYIPERDTYVSLISSYSRCGLFDQ---AMEIYKRMIEA----GIYPDISTYNAVLSAL 510

Query: 392 AEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAK 430
           A  G    AE LF E+   +       Y++L+ AY  AK
Sbjct: 511 ARGGRWEQAEKLFAEMVDRDCKPDELSYSSLLHAYANAK 549



 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 66/298 (22%), Positives = 134/298 (44%), Gaps = 51/298 (17%)

Query: 152 ILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHA 211
           I ++M    + P +ST++ ++   A     E   K++++M   + +P+E+SY  L  A+A
Sbjct: 487 IYKRMIEAGIYPDISTYNAVLSALARGGRWEQAEKLFAEMVDRDCKPDELSYSSLLHAYA 546

Query: 212 VAR----LYTVAET-YVEALEKSMTGNNW------------------------------- 235
            A+    + T++E  Y E +E+    +NW                               
Sbjct: 547 NAKKLDKMKTLSEDIYAERIER----HNWLVKTLVLVNNKVNNLPETEKAFQELRRRRCS 602

Query: 236 ---STLDVLIILYGYLAKGKDLERIWATVQELP-NVRSKSYVLAIEAFGRIAQVSRAEEL 291
              + L+ ++ +YG     K +E + + + E   N  + +Y   +  + R+    + E +
Sbjct: 603 LDINVLNAMVSIYGKNKMVKKVEEVLSLMMENSINHSAATYNSLMHMYSRLGDCEKCESI 662

Query: 292 WLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFK 351
             E++S         YN+VI  Y + G + +AS L  EM  +G KP+ +TY ++ +  + 
Sbjct: 663 LTEIKSSGMRPDRYSYNTVIYAYGRKGQMKEASRLFSEMKCSGVKPDIVTY-NIFIKSYV 721

Query: 352 SNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKK 409
           +N++ E  +A++L   L+T    +   P   T  SI++ ++  G +  A++    L K
Sbjct: 722 ANIMFE--EAIDLVRYLVT----QGCRPNERTFNSILQGYSRHGRMVEAKSFLSNLPK 773



 Score = 63.2 bits (152), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 52/208 (25%), Positives = 92/208 (44%), Gaps = 30/208 (14%)

Query: 276 IEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGC 335
           ++ +G+  +   A  +   M++     +   YNS+IS Y K+G +++A  L +EM   G 
Sbjct: 297 LDVYGKARKHEEAIGVLKRMENAGCTPSVVTYNSLISAYVKDGLLEEALELKQEMEFRGM 356

Query: 336 KPNAITYRHLALGCFK-----------SNLVEEG-------FKAL--------ELGMKLI 369
           KP+ +TY  L  G  +           S +V  G       + AL        +    + 
Sbjct: 357 KPDVVTYTTLISGLDRVGKIDAALATYSEMVRNGCSPNLCTYNALIKLHGVRGKFTEMMA 416

Query: 370 TTKKVRSS--TPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYV 427
               +RS+   P + T  +++ +F + G       +F+E+KKA Y      Y +LI +Y 
Sbjct: 417 VFDDLRSAGYVPDVVTWNTLLSVFGQNGLDSEVSGVFKEMKKAGYIPERDTYVSLISSYS 476

Query: 428 KAKINDP--NLLRRMILGGARPDAETYS 453
           +  + D    + +RMI  G  PD  TY+
Sbjct: 477 RCGLFDQAMEIYKRMIEAGIYPDISTYN 504



 Score = 47.8 bits (112), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 48/211 (22%), Positives = 81/211 (38%), Gaps = 10/211 (4%)

Query: 248 LAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQY 307
            A+   L    A ++  P   + +Y   + AF R  +   A  ++  M       A   Y
Sbjct: 163 FARAGCLAEASAILEAAPAPDASAYTALVSAFSRAGRFRDAVAVFQRMVDGGVQPALVTY 222

Query: 308 NSVISVYCKNGFI-DKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGM 366
           N V   Y K      +   L+  M  +G + +  TY  L   C +  L  E  +  +   
Sbjct: 223 NVVFHAYSKMSVPWKEVVALVDSMKEDGIERDRYTYNTLISCCRRRGLHREAAQVFD--- 279

Query: 367 KLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAY 426
                 K     P   T  S+++++ +      A  + + ++ A  T     YN+LI AY
Sbjct: 280 ----EMKAAGFEPDKVTFNSLLDVYGKARKHEEAIGVLKRMENAGCTPSVVTYNSLISAY 335

Query: 427 VKAKINDP--NLLRRMILGGARPDAETYSLL 455
           VK  + +    L + M   G +PD  TY+ L
Sbjct: 336 VKDGLLEEALELKQEMEFRGMKPDVVTYTTL 366


>gi|15221282|ref|NP_172694.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|122242333|sp|Q0WKV3.1|PPR36_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g12300, mitochondrial; Flags: Precursor
 gi|110741411|dbj|BAF02254.1| hypothetical protein [Arabidopsis thaliana]
 gi|332190743|gb|AEE28864.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 637

 Score = 75.9 bits (185), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 86/396 (21%), Positives = 163/396 (41%), Gaps = 37/396 (9%)

Query: 94  NELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNIL 153
           N + ++ L+     +G +  +LE + +M  +GH    +  N L+      G+      ++
Sbjct: 157 NTITFSTLINGLCLEGRVSEALELVDRMVEMGHKPDLITINTLVNGLCLSGKEAEAMLLI 216

Query: 154 RQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVA 213
            +M      P+  T+  ++ +          M++   M+   ++ + V Y I+       
Sbjct: 217 DKMVEYGCQPNAVTYGPVLNVMCKSGQTALAMELLRKMEERNIKLDAVKYSIIIDGLCKH 276

Query: 214 RLYTVAETYVEALEKSMTGNNWSTLDVLIILY---GYLAKGKDLERIWATVQELPNVRSK 270
                A      +E      N  T ++LI  +   G    G  L R     +  PNV   
Sbjct: 277 GSLDNAFNLFNEMEMKGITTNIITYNILIGGFCNAGRWDDGAKLLRDMIKRKINPNV--V 334

Query: 271 SYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEM 330
           ++ + I++F +  ++  AEEL  EM        T  Y S+I  +CK   +DKA+ ++  M
Sbjct: 335 TFSVLIDSFVKEGKLREAEELHKEMIHRGIAPDTITYTSLIDGFCKENHLDKANQMVDLM 394

Query: 331 SMNGCKPNAITYRHLALGCFKSNLVEEGFKAL-----------------------ELGMK 367
              GC PN  T+  L  G  K+N +++G +                         ELG K
Sbjct: 395 VSKGCDPNIRTFNILINGYCKANRIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELG-K 453

Query: 368 LITTKKV------RSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNT 421
           L   K++      R   P + T   +++   + G+   A  +FE+++K+       +YN 
Sbjct: 454 LNVAKELFQEMVSRKVPPNIVTYKILLDGLCDNGESEKALEIFEKIEKSKMELDIGIYNI 513

Query: 422 LIKAYVKA-KINDP-NLLRRMILGGARPDAETYSLL 455
           +I     A K++D  +L   + L G +P  +TY+++
Sbjct: 514 IIHGMCNASKVDDAWDLFCSLPLKGVKPGVKTYNIM 549



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 80/369 (21%), Positives = 158/369 (42%), Gaps = 18/369 (4%)

Query: 94  NELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNIL 153
           N + Y  ++      G   L++E ++KM      +  + ++ +I      G      N+ 
Sbjct: 227 NAVTYGPVLNVMCKSGQTALAMELLRKMEERNIKLDAVKYSIIIDGLCKHGSLDNAFNLF 286

Query: 154 RQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAV- 212
            +M+   +  ++ T++IL+    N    +   K+  DM + ++ PN V++ +L  +    
Sbjct: 287 NEMEMKGITTNIITYNILIGGFCNAGRWDDGAKLLRDMIKRKINPNVVTFSVLIDSFVKE 346

Query: 213 ARLYTVAETYVEALEKSMTGNN--WSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSK 270
            +L    E + E + + +  +   +++L        +L K   +  +  +    PN+R+ 
Sbjct: 347 GKLREAEELHKEMIHRGIAPDTITYTSLIDGFCKENHLDKANQMVDLMVSKGCDPNIRT- 405

Query: 271 SYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEM 330
            + + I  + +  ++    EL+ +M     +  T  YN++I  +C+ G ++ A  L +EM
Sbjct: 406 -FNILINGYCKANRIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKLNVAKELFQEM 464

Query: 331 SMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLS--II 388
                 PN +TY+ L  G   +    E  KALE+       +K+  S   L+  +   II
Sbjct: 465 VSRKVPPNIVTYKILLDGLCDNG---ESEKALEI------FEKIEKSKMELDIGIYNIII 515

Query: 389 EIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVK-AKINDPNLL-RRMILGGAR 446
                   V +A +LF  L           YN +I    K   +++  LL R+M   G  
Sbjct: 516 HGMCNASKVDDAWDLFCSLPLKGVKPGVKTYNIMIGGLCKKGPLSEAELLFRKMEEDGHA 575

Query: 447 PDAETYSLL 455
           PD  TY++L
Sbjct: 576 PDGWTYNIL 584



 Score = 49.3 bits (116), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 71/357 (19%), Positives = 133/357 (37%), Gaps = 53/357 (14%)

Query: 98  YNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMK 157
           Y+ ++      G +  +     +M + G + + + +N LI    + GR      +LR M 
Sbjct: 266 YSIIIDGLCKHGSLDNAFNLFNEMEMKGITTNIITYNILIGGFCNAGRWDDGAKLLRDMI 325

Query: 158 ADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYT 217
             K+ P+V TF +L+     +  +    +++ +M    + P+ ++Y  L           
Sbjct: 326 KRKINPNVVTFSVLIDSFVKEGKLREAEELHKEMIHRGIAPDTITYTSLIDGFCKENHLD 385

Query: 218 VAETYVEALEKSMTGNNWSTLDVLIILY---GYLAKGKDLERIWATVQELPNVRSKSYVL 274
            A   V+ +       N  T ++LI  Y     +  G +L R  +    + +  + +Y  
Sbjct: 386 KANQMVDLMVSKGCDPNIRTFNILINGYCKANRIDDGLELFRKMSLRGVVAD--TVTYNT 443

Query: 275 AIEAFGRIAQVSRAEELWLEM-----------------------QSVKQLKATEQ----- 306
            I+ F  + +++ A+EL+ EM                       +S K L+  E+     
Sbjct: 444 LIQGFCELGKLNVAKELFQEMVSRKVPPNIVTYKILLDGLCDNGESEKALEIFEKIEKSK 503

Query: 307 -------YNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEG- 358
                  YN +I   C    +D A  L   + + G KP   TY  +  G  K   + E  
Sbjct: 504 MELDIGIYNIIIHGMCNASKVDDAWDLFCSLPLKGVKPGVKTYNIMIGGLCKKGPLSEAE 563

Query: 359 --FKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYT 413
             F+ +E        +   +   W    L  I      GD   +  L EELK+  ++
Sbjct: 564 LLFRKME--------EDGHAPDGWTYNIL--IRAHLGDGDATKSVKLIEELKRCGFS 610


>gi|255556189|ref|XP_002519129.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223541792|gb|EEF43340.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 643

 Score = 75.9 bits (185), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 88/395 (22%), Positives = 156/395 (39%), Gaps = 49/395 (12%)

Query: 98  YNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMK 157
           +N ++     +G +K + +++  M  LG   + + +N +I    S GR +    +L  MK
Sbjct: 239 FNIMINVLCKEGKLKKAKDFIGSMENLGVKPNVVTYNTVIHGYCSRGRVEGARMVLDIMK 298

Query: 158 ADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYT 217
              V P   T+  L+        +E    +   MK   + P  V+Y  L   +       
Sbjct: 299 NRGVEPDSYTYGSLISGMCKGGKLEEASGILEKMKEIGLLPTAVTYNTLIDGYCNKGDLV 358

Query: 218 VAETYVEALEKSMTGNNWSTLDVLI---ILYGYLAKGKDLERIWATVQELPNVRSKSYVL 274
            A  Y + + +       ST ++LI    L G + +   + +       +P+  S +Y +
Sbjct: 359 KAFGYRDEMVRRAILPTVSTYNLLIHALFLEGKMDEADGMIKDMGDSGIVPD--SITYNI 416

Query: 275 AIEAFGRIAQVSRAEELWLEMQSV-------------------KQLKATEQ--------- 306
            I  + R     +A  L  EM S                     ++KA +          
Sbjct: 417 LINGYCRCGNAKKAFNLHDEMISKGIQPTLVTYTSLIYVLSKRNRMKAADDLFEKIIREG 476

Query: 307 -------YNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGF 359
                  +N++I  +C NG +D+A  LLKEM      P+ +TY  L  G  +   VEE  
Sbjct: 477 ASPDLIMFNALIDGHCANGNLDRAFALLKEMDKRNIVPDEVTYNTLMQGRCREGKVEE-- 534

Query: 360 KALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVY 419
                  +L+   K R   P   +  ++I  ++++GD+ +A  + +E+    +      Y
Sbjct: 535 -----ARELLKEMKRRGIRPDHISYNTLISGYSKRGDINDAFTIRDEMLSIGFNPTLLTY 589

Query: 420 NTLIKAYVKAKIND--PNLLRRMILGGARPDAETY 452
           N LI+   K +  D    LL+ M+  G  PD  TY
Sbjct: 590 NALIQGLCKNQQGDLAEELLKEMVSKGITPDDSTY 624



 Score = 72.4 bits (176), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 86/332 (25%), Positives = 143/332 (43%), Gaps = 20/332 (6%)

Query: 132 VFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDM 191
            FN +I +    G+ K   + +  M+   V P+V T++ ++    +   +EG   V   M
Sbjct: 238 TFNIMINVLCKEGKLKKAKDFIGSMENLGVKPNVVTYNTVIHGYCSRGRVEGARMVLDIM 297

Query: 192 KRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKG 251
           K   VEP+  +Y  L +          A   +E +++        T + LI   GY  KG
Sbjct: 298 KNRGVEPDSYTYGSLISGMCKGGKLEEASGILEKMKEIGLLPTAVTYNTLI--DGYCNKG 355

Query: 252 KDLERIWATVQE------LPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATE 305
            DL + +    E      LP V   +Y L I A     ++  A+ +  +M     +  + 
Sbjct: 356 -DLVKAFGYRDEMVRRAILPTV--STYNLLIHALFLEGKMDEADGMIKDMGDSGIVPDSI 412

Query: 306 QYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELG 365
            YN +I+ YC+ G   KA  L  EM   G +P  +TY  L     K N ++    A +L 
Sbjct: 413 TYNILINGYCRCGNAKKAFNLHDEMISKGIQPTLVTYTSLIYVLSKRNRMK---AADDLF 469

Query: 366 MKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKA 425
            K+I       ++P L    ++I+     G++  A  L +E+ K N       YNTL++ 
Sbjct: 470 EKIIR----EGASPDLIMFNALIDGHCANGNLDRAFALLKEMDKRNIVPDEVTYNTLMQG 525

Query: 426 YVK-AKINDP-NLLRRMILGGARPDAETYSLL 455
             +  K+ +   LL+ M   G RPD  +Y+ L
Sbjct: 526 RCREGKVEEARELLKEMKRRGIRPDHISYNTL 557



 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 68/254 (26%), Positives = 109/254 (42%), Gaps = 24/254 (9%)

Query: 213 ARLYTVAETYVE-ALEKSMTGNNWS-TLDVLIILYGYLAKGKDLERIWATVQE---LPNV 267
           +R+  V + + E A+ +   G   S   D+LI     L +G D    +  ++E   +P +
Sbjct: 142 SRVAGVKDVFHELAITRDRLGTKSSIVFDMLIRACCELKRGDDAFECFDMMKEKGVVPKI 201

Query: 268 RSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLL 327
            + + +L++  F ++ Q      L+ EM  +K       +N +I+V CK G + KA   +
Sbjct: 202 ETFNAMLSL--FLKLNQTETVWVLYAEMFRLKIKSTVYTFNIMINVLCKEGKLKKAKDFI 259

Query: 328 KEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSI 387
             M   G KPN +TY  +  G      VE     L++        K R   P   T  S+
Sbjct: 260 GSMENLGVKPNVVTYNTVIHGYCSRGRVEGARMVLDI-------MKNRGVEPDSYTYGSL 312

Query: 388 IEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAY------VKAKINDPNLLRRMI 441
           I    + G +  A  + E++K+         YNTLI  Y      VKA      ++RR I
Sbjct: 313 ISGMCKGGKLEEASGILEKMKEIGLLPTAVTYNTLIDGYCNKGDLVKAFGYRDEMVRRAI 372

Query: 442 LGGARPDAETYSLL 455
           L    P   TY+LL
Sbjct: 373 L----PTVSTYNLL 382



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 79/370 (21%), Positives = 156/370 (42%), Gaps = 18/370 (4%)

Query: 93  QNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNI 152
           ++ ++++ L+ AC +      + E    M+  G       FN ++ L     + +T+  +
Sbjct: 164 KSSIVFDMLIRACCELKRGDDAFECFDMMKEKGVVPKIETFNAMLSLFLKLNQTETVWVL 223

Query: 153 LRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAV 212
             +M   K+   V TF+I++ +   +  ++        M+   V+PN V+Y  +   +  
Sbjct: 224 YAEMFRLKIKSTVYTFNIMINVLCKEGKLKKAKDFIGSMENLGVKPNVVTYNTVIHGYCS 283

Query: 213 ARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNV----R 268
                 A   ++ ++      +  T   LI     + KG  LE     ++++  +     
Sbjct: 284 RGRVEGARMVLDIMKNRGVEPDSYTYGSLI---SGMCKGGKLEEASGILEKMKEIGLLPT 340

Query: 269 SKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLK 328
           + +Y   I+ +     + +A     EM     L     YN +I      G +D+A G++K
Sbjct: 341 AVTYNTLIDGYCNKGDLVKAFGYRDEMVRRAILPTVSTYNLLIHALFLEGKMDEADGMIK 400

Query: 329 EMSMNGCKPNAITYRHLALG-CFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSI 387
           +M  +G  P++ITY  L  G C   N      KA  L  ++I+    +   P L T  S+
Sbjct: 401 DMGDSGIVPDSITYNILINGYCRCGN----AKKAFNLHDEMIS----KGIQPTLVTYTSL 452

Query: 388 IEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKINDP--NLLRRMILGGA 445
           I + +++  +  A++LFE++ +   +    ++N LI  +      D    LL+ M     
Sbjct: 453 IYVLSKRNRMKAADDLFEKIIREGASPDLIMFNALIDGHCANGNLDRAFALLKEMDKRNI 512

Query: 446 RPDAETYSLL 455
            PD  TY+ L
Sbjct: 513 VPDEVTYNTL 522



 Score = 43.9 bits (102), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 59/258 (22%), Positives = 106/258 (41%), Gaps = 7/258 (2%)

Query: 98  YNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMK 157
           YN L+ A   +G +  +   +K M   G     + +N LI      G  K   N+  +M 
Sbjct: 379 YNLLIHALFLEGKMDEADGMIKDMGDSGIVPDSITYNILINGYCRCGNAKKAFNLHDEMI 438

Query: 158 ADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYT 217
           +  + P + T+  L+ + +  + ++    ++  + R    P+ + +  L   H       
Sbjct: 439 SKGIQPTLVTYTSLIYVLSKRNRMKAADDLFEKIIREGASPDLIMFNALIDGHCANGNLD 498

Query: 218 VAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELP--NVRSK--SYV 273
            A   ++ ++K     +  T + L  + G   +GK +E     ++E+    +R    SY 
Sbjct: 499 RAFALLKEMDKRNIVPDEVTYNTL--MQGRCREGK-VEEARELLKEMKRRGIRPDHISYN 555

Query: 274 LAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMN 333
             I  + +   ++ A  +  EM S+        YN++I   CKN   D A  LLKEM   
Sbjct: 556 TLISGYSKRGDINDAFTIRDEMLSIGFNPTLLTYNALIQGLCKNQQGDLAEELLKEMVSK 615

Query: 334 GCKPNAITYRHLALGCFK 351
           G  P+  TY  L  G  K
Sbjct: 616 GITPDDSTYFSLIEGIGK 633



 Score = 39.7 bits (91), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 29/125 (23%), Positives = 60/125 (48%), Gaps = 1/125 (0%)

Query: 88  IPKDYQNELL-YNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRR 146
           I K  Q  L+ Y +L+     +  +K + +  +K+   G S   ++FN LI  + + G  
Sbjct: 438 ISKGIQPTLVTYTSLIYVLSKRNRMKAADDLFEKIIREGASPDLIMFNALIDGHCANGNL 497

Query: 147 KTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCIL 206
                +L++M    + P   T++ LM+    +  +E   ++  +MKR  + P+ +SY  L
Sbjct: 498 DRAFALLKEMDKRNIVPDEVTYNTLMQGRCREGKVEEARELLKEMKRRGIRPDHISYNTL 557

Query: 207 ATAHA 211
            + ++
Sbjct: 558 ISGYS 562


>gi|302762244|ref|XP_002964544.1| hypothetical protein SELMODRAFT_82221 [Selaginella moellendorffii]
 gi|300168273|gb|EFJ34877.1| hypothetical protein SELMODRAFT_82221 [Selaginella moellendorffii]
          Length = 528

 Score = 75.9 bits (185), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 60/242 (24%), Positives = 108/242 (44%), Gaps = 16/242 (6%)

Query: 223 VEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPN----VRSKSYVLAIEA 278
           V+ L++ ++  +      L ++   L  G  ++     V+E+ +      + +Y   ++ 
Sbjct: 59  VQVLQEMVSARHVPDNTTLTVVVQSLCLGDRVDDARELVEEMLHRGMAANAITYSALVDG 118

Query: 279 FGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPN 338
             +  ++  A  L   M           YNS+I+ +C+   +D+A G +++M   GC P+
Sbjct: 119 LCKCERLDEAVALVETMAERGCAPTVVTYNSIITGFCRARRVDEAHGFMEQMVAEGCHPD 178

Query: 339 AITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVG 398
            ITY  L  G  KS  V         G++L+     R  TP + T  ++I+   + G + 
Sbjct: 179 IITYTALIGGFCKSRDVGR-------GLELLGEVTRRGFTPDIVTYSTVIDGLCKAGRLR 231

Query: 399 NAENLFEELKKANYTKYTFVYNTLIKAYVKAKINDP--NLLRRMILGGARPDAETYSLLK 456
           +A ++FEE+  A        YN+LI  Y +A   D    LL +M+     PD  TY+ L 
Sbjct: 232 DAVDIFEEMSCA---PTAITYNSLIGGYCRAGDMDEAIRLLGKMVDDKCAPDVVTYTTLM 288

Query: 457 LA 458
            A
Sbjct: 289 SA 290



 Score = 67.4 bits (163), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 78/375 (20%), Positives = 153/375 (40%), Gaps = 57/375 (15%)

Query: 96  LLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQ 155
           LL+N ++      G ++ +L   ++M    H   +L + +L+   S   R +    +L++
Sbjct: 6   LLHNVVIGGLCRAGRLRHALGVYRQMND-AHPPDFLTYTKLVHGLSKARRLRDAVQVLQE 64

Query: 156 MKADKVAPHVSTFHILMK--------------IEANDHN------------IEGLMK--- 186
           M + +  P  +T  ++++              +E   H             ++GL K   
Sbjct: 65  MVSARHVPDNTTLTVVVQSLCLGDRVDDARELVEEMLHRGMAANAITYSALVDGLCKCER 124

Query: 187 ------VYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDV 240
                 +   M      P  V+Y  + T    AR    A  ++E +       +  T   
Sbjct: 125 LDEAVALVETMAERGCAPTVVTYNSIITGFCRARRVDEAHGFMEQMVAEGCHPDIITYTA 184

Query: 241 LIILYGYLAKGKDLERIWATVQEL------PNVRSKSYVLAIEAFGRIAQVSRAEELWLE 294
           LI   G   K +D+ R    + E+      P++ + S V  I+   +  ++  A +++ E
Sbjct: 185 LI---GGFCKSRDVGRGLELLGEVTRRGFTPDIVTYSTV--IDGLCKAGRLRDAVDIFEE 239

Query: 295 MQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNL 354
           M           YNS+I  YC+ G +D+A  LL +M  + C P+ +TY  L     K   
Sbjct: 240 MSCAP---TAITYNSLIGGYCRAGDMDEAIRLLGKMVDDKCAPDVVTYTTLMSAFCKMGR 296

Query: 355 VEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTK 414
           +++ +   EL  +++  K     +P + T  S+++    +G + +A  L EE+ +     
Sbjct: 297 LDDAY---ELFQQMVANKL----SPDVVTFTSLVDGLCGEGRMEDALELLEEITRRGCPP 349

Query: 415 YTFVYNTLIKAYVKA 429
             + YN ++  Y KA
Sbjct: 350 TIYTYNCVVDGYCKA 364



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 84/467 (17%), Positives = 183/467 (39%), Gaps = 58/467 (12%)

Query: 28  EIFHSINRLRKLQLNKRALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQGEKLFCC 87
           ++ H +++ R+L   + A++V++ ++  R + P     + +++       +    +L   
Sbjct: 44  KLVHGLSKARRL---RDAVQVLQEMVSAR-HVPDNTTLTVVVQSLCLGDRVDDAREL--- 96

Query: 88  IPKDYQNELLYNNLVIACLDKGVIKL-----SLEYMKKMRVLGHSISYLVFNRLIILNSS 142
           + +     +  N +  + L  G+ K      ++  ++ M   G + + + +N +I     
Sbjct: 97  VEEMLHRGMAANAITYSALVDGLCKCERLDEAVALVETMAERGCAPTVVTYNSIITGFCR 156

Query: 143 PGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVS 202
             R       + QM A+   P + T+  L+       ++   +++  ++ R    P+ V+
Sbjct: 157 ARRVDEAHGFMEQMVAEGCHPDIITYTALIGGFCKSRDVGRGLELLGEVTRRGFTPDIVT 216

Query: 203 YCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQ 262
           Y  +      A     A    E +  + T   +++L     + GY   G D++     + 
Sbjct: 217 YSTVIDGLCKAGRLRDAVDIFEEMSCAPTAITYNSL-----IGGYCRAG-DMDEAIRLLG 270

Query: 263 ELPNVRSK----SYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNG 318
           ++ + +      +Y   + AF ++ ++  A EL+ +M + K       + S++   C  G
Sbjct: 271 KMVDDKCAPDVVTYTTLMSAFCKMGRLDDAYELFQQMVANKLSPDVVTFTSLVDGLCGEG 330

Query: 319 FIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEE-----------GF-------- 359
            ++ A  LL+E++  GC P   TY  +  G  K+N V +           GF        
Sbjct: 331 RMEDALELLEEITRRGCPPTIYTYNCVVDGYCKANQVRKAEELVADFRSRGFVPNTVTYN 390

Query: 360 -------KALELGMKLITTKKVRSSTPWLETTLS----IIEIFAEKGDVGNAENLFEELK 408
                  +A      L    ++ S      T+++    I++     G   +A   +EE+ 
Sbjct: 391 ILVAGCCRAGRTDQALQYLDQLNSEGGPCPTSVAMYAIILDALCRDGRTDDAVQFYEEMI 450

Query: 409 KANYTKYTFVYNTLIKAYVKAKINDPN----LLRRMILGGARPDAET 451
           +  Y      + T++ A  KA  + P     LL  MI  G  P   T
Sbjct: 451 QRGYVPAAATFATVVFALCKA--HQPQQAHELLEEMIKYGHTPGPGT 495



 Score = 53.1 bits (126), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 46/185 (24%), Positives = 70/185 (37%), Gaps = 9/185 (4%)

Query: 271 SYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEM 330
           +Y   +    +  ++  A ++  EM S + +        V+   C    +D A  L++EM
Sbjct: 41  TYTKLVHGLSKARRLRDAVQVLQEMVSARHVPDNTTLTVVVQSLCLGDRVDDARELVEEM 100

Query: 331 SMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEI 390
              G   NAITY  L  G  K   ++E        + L+ T   R   P + T  SII  
Sbjct: 101 LHRGMAANAITYSALVDGLCKCERLDE-------AVALVETMAERGCAPTVVTYNSIITG 153

Query: 391 FAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKI--NDPNLLRRMILGGARPD 448
           F     V  A    E++           Y  LI  + K++       LL  +   G  PD
Sbjct: 154 FCRARRVDEAHGFMEQMVAEGCHPDIITYTALIGGFCKSRDVGRGLELLGEVTRRGFTPD 213

Query: 449 AETYS 453
             TYS
Sbjct: 214 IVTYS 218



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 71/334 (21%), Positives = 117/334 (35%), Gaps = 54/334 (16%)

Query: 44  RALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQGEKLF---CCIPKDYQNELLYNN 100
           R LE++  V R R + P  + YS +++   K   +     +F    C P      + YN+
Sbjct: 197 RGLELLGEVTR-RGFTPDIVTYSTVIDGLCKAGRLRDAVDIFEEMSCAP----TAITYNS 251

Query: 101 LVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADK 160
           L+      G +  ++  + KM     +   + +  L+      GR      + +QM A+K
Sbjct: 252 LIGGYCRAGDMDEAIRLLGKMVDDKCAPDVVTYTTLMSAFCKMGRLDDAYELFQQMVANK 311

Query: 161 VAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEP---------------------- 198
           ++P V TF  L+     +  +E  +++  ++ R    P                      
Sbjct: 312 LSPDVVTFTSLVDGLCGEGRMEDALELLEEITRRGCPPTIYTYNCVVDGYCKANQVRKAE 371

Query: 199 -------------NEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILY 245
                        N V+Y IL      A     A  Y++ L         S     IIL 
Sbjct: 372 ELVADFRSRGFVPNTVTYNILVAGCCRAGRTDQALQYLDQLNSEGGPCPTSVAMYAIILD 431

Query: 246 GYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIA-------QVSRAEELWLEMQSV 298
                G    R    VQ    +  + YV A   F  +        Q  +A EL  EM   
Sbjct: 432 ALCRDG----RTDDAVQFYEEMIQRGYVPAAATFATVVFALCKAHQPQQAHELLEEMIKY 487

Query: 299 KQLKATEQYNSVISVYCKNGFIDKASGLLKEMSM 332
                    ++V+S YC+ G I KA  L  E+ +
Sbjct: 488 GHTPGPGTCDAVVSAYCRAGMIQKADELASELRL 521



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 63/330 (19%), Positives = 136/330 (41%), Gaps = 31/330 (9%)

Query: 114 SLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMK 173
            LE + ++   G +   + ++ +I      GR +   +I  +M     AP   T++ L+ 
Sbjct: 198 GLELLGEVTRRGFTPDIVTYSTVIDGLCKAGRLRDAVDIFEEMSC---APTAITYNSLIG 254

Query: 174 IEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHA-VARLYTVAETYVEALEKSMTG 232
                 +++  +++   M   +  P+ V+Y  L +A   + RL    E +     + M  
Sbjct: 255 GYCRAGDMDEAIRLLGKMVDDKCAPDVVTYTTLMSAFCKMGRLDDAYELF-----QQMVA 309

Query: 233 NNWSTLDVLI---ILYGYLAKGKDLERIWATVQEL------PNVRSKSYVLAIEAFGRIA 283
           N  S  DV+    ++ G   +G+ +E     ++E+      P +   +Y   ++ + +  
Sbjct: 310 NKLSP-DVVTFTSLVDGLCGEGR-MEDALELLEEITRRGCPPTI--YTYNCVVDGYCKAN 365

Query: 284 QVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNG--CKPNAIT 341
           QV +AEEL  + +S   +  T  YN +++  C+ G  D+A   L +++  G  C  +   
Sbjct: 366 QVRKAEELVADFRSRGFVPNTVTYNILVAGCCRAGRTDQALQYLDQLNSEGGPCPTSVAM 425

Query: 342 YRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAE 401
           Y  +     +    ++  +  E  ++       R   P   T  +++    +      A 
Sbjct: 426 YAIILDALCRDGRTDDAVQFYEEMIQ-------RGYVPAAATFATVVFALCKAHQPQQAH 478

Query: 402 NLFEELKKANYTKYTFVYNTLIKAYVKAKI 431
            L EE+ K  +T      + ++ AY +A +
Sbjct: 479 ELLEEMIKYGHTPGPGTCDAVVSAYCRAGM 508


>gi|18394846|ref|NP_564110.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75174883|sp|Q9LN22.1|PPR54_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g20300, mitochondrial; Flags: Precursor
 gi|9558596|gb|AAF88159.1|AC026234_10 Contains similarity to a hypothetical protein T3P18.15 gi|5454201
           from Arabidopsis thaliana BAC T3P18 gb|AC005698 and
           contains multiple PPR PF|01535 repeats [Arabidopsis
           thaliana]
 gi|17386104|gb|AAL38598.1|AF446865_1 At1g20300/F14O10_8 [Arabidopsis thaliana]
 gi|15450347|gb|AAK96467.1| At1g20300/F14O10_8 [Arabidopsis thaliana]
 gi|332191838|gb|AEE29959.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 537

 Score = 75.9 bits (185), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 73/335 (21%), Positives = 148/335 (44%), Gaps = 29/335 (8%)

Query: 133 FNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMK 192
           +N +I L+    +     +++  MK+  V   + TF IL++           +  ++ M+
Sbjct: 154 YNEMIDLSGKVRQFDLAWHLIDLMKSRNVEISIETFTILIRRYVRAGLASEAVHCFNRME 213

Query: 193 RSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKG- 251
                P+++++ I+ +  +  R  + A+++ ++L+     +        +I+Y  L +G 
Sbjct: 214 DYGCVPDKIAFSIVISNLSRKRRASEAQSFFDSLKDRFEPD--------VIVYTNLVRGW 265

Query: 252 ------KDLERIWATVQEL---PNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLK 302
                  + E+++  ++     PNV +  Y + I+A  R  Q+SRA +++ +M       
Sbjct: 266 CRAGEISEAEKVFKEMKLAGIEPNVYT--YSIVIDALCRCGQISRAHDVFADMLDSGCAP 323

Query: 303 ATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKAL 362
               +N+++ V+ K G  +K   +  +M   GC+P+ ITY  L     +   +E   K L
Sbjct: 324 NAITFNNLMRVHVKAGRTEKVLQVYNQMKKLGCEPDTITYNFLIEAHCRDENLENAVKVL 383

Query: 363 ELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTL 422
              +K    KK   +     T    IE   +K DV  A  ++ ++ +A     T  YN L
Sbjct: 384 NTMIK----KKCEVNASTFNTIFRYIE---KKRDVNGAHRMYSKMMEAKCEPNTVTYNIL 436

Query: 423 IKAYVKAKINDP--NLLRRMILGGARPDAETYSLL 455
           ++ +V +K  D    + + M      P+  TY LL
Sbjct: 437 MRMFVGSKSTDMVLKMKKEMDDKEVEPNVNTYRLL 471



 Score = 62.0 bits (149), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 57/294 (19%), Positives = 125/294 (42%), Gaps = 8/294 (2%)

Query: 60  PKELDYSYLLEFTIKNHGISQGEKLFCCIPKDYQNELL-YNNLVIACLDKGVIKLSLEYM 118
           P ++ +S ++    +    S+ +  F  +   ++ +++ Y NLV      G I  + +  
Sbjct: 219 PDKIAFSIVISNLSRKRRASEAQSFFDSLKDRFEPDVIVYTNLVRGWCRAGEISEAEKVF 278

Query: 119 KKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEAND 178
           K+M++ G   +   ++ +I      G+     ++   M     AP+  TF+ LM++    
Sbjct: 279 KEMKLAGIEPNVYTYSIVIDALCRCGQISRAHDVFADMLDSGCAPNAITFNNLMRVHVKA 338

Query: 179 HNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTL 238
              E +++VY+ MK+   EP+ ++Y  L  AH        A   +  + K     N ST 
Sbjct: 339 GRTEKVLQVYNQMKKLGCEPDTITYNFLIEAHCRDENLENAVKVLNTMIKKKCEVNASTF 398

Query: 239 DVLIILYGYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSV 298
           +    ++ Y+ K +D+        ++   + +   +      R+   S++ ++ L+M+  
Sbjct: 399 NT---IFRYIEKKRDVNGAHRMYSKMMEAKCEPNTVTYNILMRMFVGSKSTDMVLKMKKE 455

Query: 299 KQLKATE----QYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALG 348
              K  E     Y  +++++C  G  + A  L KEM    C   +++   + L 
Sbjct: 456 MDDKEVEPNVNTYRLLVTMFCGMGHWNNAYKLFKEMVEEKCLTPSLSLYEMVLA 509



 Score = 48.5 bits (114), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 51/246 (20%), Positives = 103/246 (41%), Gaps = 16/246 (6%)

Query: 60  PKELDYSYLLEFTIKNHGISQGEKLFC------CIPKDYQNELLYNNLVIACLDKGVIKL 113
           P    YS +++   +   IS+   +F       C P    N + +NNL+   +  G  + 
Sbjct: 288 PNVYTYSIVIDALCRCGQISRAHDVFADMLDSGCAP----NAITFNNLMRVHVKAGRTEK 343

Query: 114 SLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMK 173
            L+   +M+ LG     + +N LI  +      +    +L  M   K   + STF+ + +
Sbjct: 344 VLQVYNQMKKLGCEPDTITYNFLIEAHCRDENLENAVKVLNTMIKKKCEVNASTFNTIFR 403

Query: 174 IEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGN 233
                 ++ G  ++YS M  ++ EPN V+Y IL      ++   +     + ++      
Sbjct: 404 YIEKKRDVNGAHRMYSKMMEAKCEPNTVTYNILMRMFVGSKSTDMVLKMKKEMDDKEVEP 463

Query: 234 NWSTLDVLIILYGYLAKGKDLERIWATVQE----LPNVRSKSYVLAIEAFGRIAQVSRAE 289
           N +T  +L+ ++  +    +  +++  + E     P++     VLA     R  Q+ + E
Sbjct: 464 NVNTYRLLVTMFCGMGHWNNAYKLFKEMVEEKCLTPSLSLYEMVLA--QLRRAGQLKKHE 521

Query: 290 ELWLEM 295
           EL  +M
Sbjct: 522 ELVEKM 527


>gi|449529622|ref|XP_004171797.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
           mitochondrial-like [Cucumis sativus]
          Length = 618

 Score = 75.9 bits (185), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 84/347 (24%), Positives = 142/347 (40%), Gaps = 31/347 (8%)

Query: 133 FNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMK 192
           FNRL+   +       + ++  +M+   ++P + T  IL     N + +   +   + + 
Sbjct: 94  FNRLLGGLAKINHYSQLFSLYNEMRLAGLSPDLFTLSILANCLCNVNRVSEALAAMAGIL 153

Query: 193 RSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKG- 251
           R    PN V+Y  L     +    + A      ++K     N  T       YG L KG 
Sbjct: 154 RRGYIPNVVTYTTLIKGLCMEHRISEATRLFLRMQKLGCTPNAVT-------YGTLIKGL 206

Query: 252 ---KDLERIWATVQELPNVRSK----------SYVLAIEAFGRIAQVSRAEELWLEMQSV 298
               ++       +E+ N  S+          +Y + I+   ++ +   A+EL+ EM++ 
Sbjct: 207 CQTGNVNIALKLHKEMLNDASQYGVNCKPGVITYSIIIDGLCKVGREDEAKELFEEMKAQ 266

Query: 299 KQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEG 358
             +     Y+++I  +C  G  D++  L  EM   G +P+ +T+  L     K   V E 
Sbjct: 267 GMIPDVISYSTLIHGFCCAGKWDQSKHLFDEMVDQGVQPDMVTFSVLIDTLCKEGKVTEA 326

Query: 359 FKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFV 418
            K LE+ ++       R   P L T  S+I+ F   GD+ +A  LF  +           
Sbjct: 327 KKLLEVMIQ-------RGIVPNLITYNSLIDGFCMVGDLNSARELFLSMPSKGLEPDEIS 379

Query: 419 YNTLIKAYVKA-KINDP-NLLRRMILGGARPDAETYSLLKLAEQFQK 463
           Y TLI  Y K  K+ +  NL   M+  G  P+  TY  L L   FQK
Sbjct: 380 YTTLINGYCKTWKVKEAMNLYNEMLQVGKSPNVTTYGTL-LKGLFQK 425



 Score = 73.2 bits (178), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 107/461 (23%), Positives = 175/461 (37%), Gaps = 95/461 (20%)

Query: 44  RALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQGEKLFC------CIPKDYQNELL 97
            AL  M  ++R R Y P  + Y+ L++     H IS+  +LF       C P    N + 
Sbjct: 144 EALAAMAGILR-RGYIPNVVTYTTLIKGLCMEHRISEATRLFLRMQKLGCTP----NAVT 198

Query: 98  YNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMK 157
           Y  L+      G + ++L+  K+M  L  +  Y V       N  PG             
Sbjct: 199 YGTLIKGLCQTGNVNIALKLHKEM--LNDASQYGV-------NCKPG------------- 236

Query: 158 ADKVAPHVSTFHILMKIEANDHNIEGLMKV---------YSDMKRSEVEPNEVSYCILAT 208
                  V T+ I+         I+GL KV         + +MK   + P+ +SY  L  
Sbjct: 237 -------VITYSII---------IDGLCKVGREDEAKELFEEMKAQGMIPDVISYSTLIH 280

Query: 209 AHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILY---GYLAKGKDLERIWATVQELP 265
               A  +  ++   + +       +  T  VLI      G + + K L  +      +P
Sbjct: 281 GFCCAGKWDQSKHLFDEMVDQGVQPDMVTFSVLIDTLCKEGKVTEAKKLLEVMIQRGIVP 340

Query: 266 NVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATE-QYNSVISVYCKNGFIDKAS 324
           N+   +Y   I+ F  +  ++ A EL+L M S K L+  E  Y ++I+ YCK   + +A 
Sbjct: 341 NLI--TYNSLIDGFCMVGDLNSARELFLSMPS-KGLEPDEISYTTLINGYCKTWKVKEAM 397

Query: 325 GLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALEL-------------------- 364
            L  EM   G  PN  TY  L  G F+   V +  K   +                    
Sbjct: 398 NLYNEMLQVGKSPNVTTYGTLLKGLFQKGKVGDAKKLFGVMKTYGVSANSQIYGIFLDGL 457

Query: 365 --------GMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYT 416
                    M+L    K  +    +E    +I+   + G +  A  LFE+L +       
Sbjct: 458 CKNDCLFEAMELFNELKSYNFKLNIENYSCLIDGLCKAGKLETAWELFEKLSQEGLQPDV 517

Query: 417 FVYNTLIKAYVK-AKINDPNLL-RRMILGGARPDAETYSLL 455
             YN +I  + K  ++++ N+L  +M   G  PD   Y+ L
Sbjct: 518 VTYNIMIHGFCKVGQVDNANILFEKMEENGCTPDIIAYNTL 558



 Score = 55.8 bits (133), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 81/360 (22%), Positives = 139/360 (38%), Gaps = 56/360 (15%)

Query: 33  INRLRKLQLNKRALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQGEKLFCCIPKDY 92
           I+ L K+     A E+ E  ++ +   P  + YS L+      HG       FCC  K  
Sbjct: 244 IDGLCKVGREDEAKELFEE-MKAQGMIPDVISYSTLI------HG-------FCCAGKWD 289

Query: 93  QNELLYNNLVIACLDKGVIKLS------------------LEYMKKMRVLGHSISYLVFN 134
           Q++ L++ +V   +   ++  S                  LE M +  ++ + I+Y   N
Sbjct: 290 QSKHLFDEMVDQGVQPDMVTFSVLIDTLCKEGKVTEAKKLLEVMIQRGIVPNLITY---N 346

Query: 135 RLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRS 194
            LI      G   +   +   M +  + P   ++  L+        ++  M +Y++M + 
Sbjct: 347 SLIDGFCMVGDLNSARELFLSMPSKGLEPDEISYTTLINGYCKTWKVKEAMNLYNEMLQV 406

Query: 195 EVEPNEVSYCIL-------ATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGY 247
              PN  +Y  L              +L+ V +TY  +    + G         I L G 
Sbjct: 407 GKSPNVTTYGTLLKGLFQKGKVGDAKKLFGVMKTYGVSANSQIYG---------IFLDG- 456

Query: 248 LAKGKDLERIWATVQELPNVRSK----SYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKA 303
           L K   L        EL +   K    +Y   I+   +  ++  A EL+ ++        
Sbjct: 457 LCKNDCLFEAMELFNELKSYNFKLNIENYSCLIDGLCKAGKLETAWELFEKLSQEGLQPD 516

Query: 304 TEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALE 363
              YN +I  +CK G +D A+ L ++M  NGC P+ I Y  L  G  + N +EE  K L 
Sbjct: 517 VVTYNIMIHGFCKVGQVDNANILFEKMEENGCTPDIIAYNTLLCGFCEGNKLEEVIKLLH 576


>gi|242046162|ref|XP_002460952.1| hypothetical protein SORBIDRAFT_02g038080 [Sorghum bicolor]
 gi|241924329|gb|EER97473.1| hypothetical protein SORBIDRAFT_02g038080 [Sorghum bicolor]
          Length = 796

 Score = 75.9 bits (185), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 70/334 (20%), Positives = 141/334 (42%), Gaps = 43/334 (12%)

Query: 98  YNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMK 157
           YN L+  C  +G+ + + +   +M+  G     + FN L+ +     R +    +L++M+
Sbjct: 259 YNTLISCCRRRGLYREAAQMFDEMKAAGFEPDKVTFNSLLDVYGKARRHEEAIGVLKKME 318

Query: 158 ADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATA-HAVARLY 216
                P V T++ L+     D  +E  +++  +M+   ++P+ V+Y  L +    + ++ 
Sbjct: 319 NAGCTPSVVTYNSLISAYVKDGLLEEALELKQEMEFRGMKPDVVTYTTLISGLDRIGKID 378

Query: 217 TVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSKSYVLAI 276
               TY E +    +  N  T + LI ++G   K  ++  ++       ++RS  YV  +
Sbjct: 379 AALATYSEMVRNGCS-PNLCTYNALIKMHGVRGKFTEMMIVF------DDLRSAGYVPDV 431

Query: 277 EAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCK 336
                                         +N++++V+ +NG   + SG+ KEM   G  
Sbjct: 432 VT----------------------------WNTLLAVFGQNGLDSEVSGVFKEMKKAGYI 463

Query: 337 PNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGD 396
           P   TY  L     +  L ++   A+E+  ++I         P + T  +++   A  G 
Sbjct: 464 PERDTYVSLISSYSRCGLFDQ---AMEIYKRMIEA----GIYPDISTYNAVLSALARGGR 516

Query: 397 VGNAENLFEELKKANYTKYTFVYNTLIKAYVKAK 430
              AE LF E++  +       Y++L+ AY  AK
Sbjct: 517 WVQAEKLFAEMEDRDCKPDELSYSSLLHAYANAK 550



 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 78/331 (23%), Positives = 141/331 (42%), Gaps = 21/331 (6%)

Query: 132 VFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEAN-DHNIEGLMKVYSD 190
            +  L+   S  GR +    + R+M    V P + T+++++ + +      + ++ +   
Sbjct: 187 AYTALVSEFSRAGRFRDAVAVFRRMVDGGVQPALVTYNVVLHVYSKMSVPWKEVVVLVDS 246

Query: 191 MKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAK 250
           MK   +E +  +Y  L +      LY  A    + ++ +    +  T + L+ +YG   K
Sbjct: 247 MKEDGIELDRYTYNTLISCCRRRGLYREAAQMFDEMKAAGFEPDKVTFNSLLDVYG---K 303

Query: 251 GKDLERIWATVQELPNVRSKSYVLA----IEAFGRIAQVSRAEELWLEMQSVKQLKATEQ 306
            +  E     ++++ N      V+     I A+ +   +  A EL  EM+          
Sbjct: 304 ARRHEEAIGVLKKMENAGCTPSVVTYNSLISAYVKDGLLEEALELKQEMEFRGMKPDVVT 363

Query: 307 YNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGM 366
           Y ++IS   + G ID A     EM  NGC PN  TY  L     K + V   F  +    
Sbjct: 364 YTTLISGLDRIGKIDAALATYSEMVRNGCSPNLCTYNAL----IKMHGVRGKFTEM---- 415

Query: 367 KLITTKKVRSS--TPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIK 424
            +I    +RS+   P + T  +++ +F + G       +F+E+KKA Y      Y +LI 
Sbjct: 416 -MIVFDDLRSAGYVPDVVTWNTLLAVFGQNGLDSEVSGVFKEMKKAGYIPERDTYVSLIS 474

Query: 425 AYVKAKINDP--NLLRRMILGGARPDAETYS 453
           +Y +  + D    + +RMI  G  PD  TY+
Sbjct: 475 SYSRCGLFDQAMEIYKRMIEAGIYPDISTYN 505



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 64/313 (20%), Positives = 134/313 (42%), Gaps = 8/313 (2%)

Query: 98  YNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMK 157
           Y +L+ +    G+   ++E  K+M   G       +N ++   +  GR      +  +M+
Sbjct: 469 YVSLISSYSRCGLFDQAMEIYKRMIEAGIYPDISTYNAVLSALARGGRWVQAEKLFAEME 528

Query: 158 ADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYT 217
                P   ++  L+   AN   ++ +  +  D+    +EP+      L   +      +
Sbjct: 529 DRDCKPDELSYSSLLHAYANAKKLDKMKALSEDIYAQRIEPHNWLVKTLVLVNNKVNSLS 588

Query: 218 VAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELP-NVRSKSYVLAI 276
             E   + L +     + + L+ ++ +YG     K +E +   ++E   N  + +Y   +
Sbjct: 589 ETEKAFQELRRRRCSLDINVLNAMVSIYGKNKMVKKVEEVLTLMKENSINHSAATYNSLM 648

Query: 277 EAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCK 336
             + R+    + E +  E++S         YN+VI  Y + G + +AS L  EM  +G K
Sbjct: 649 HMYSRLGDCEKCEAILTEIKSSGMRPDRYSYNTVIYAYGRKGQMKEASRLFSEMKCSGVK 708

Query: 337 PNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGD 396
           P+ +TY ++ +  + +NL+ E  +A++L   L+     +   P   T  SI+E +   G 
Sbjct: 709 PDIVTY-NIFIKSYVANLMFE--EAIDLVRYLV----AQGCKPNERTYNSILEGYCRHGR 761

Query: 397 VGNAENLFEELKK 409
           +  A++    L K
Sbjct: 762 MVEAKSFLSNLPK 774



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 83/403 (20%), Positives = 168/403 (41%), Gaps = 41/403 (10%)

Query: 87  CIPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRR 146
           C P    + + YN+L+ A +  G+++ +LE  ++M   G     + +  LI      G+ 
Sbjct: 322 CTP----SVVTYNSLISAYVKDGLLEEALELKQEMEFRGMKPDVVTYTTLISGLDRIGKI 377

Query: 147 KTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCIL 206
                   +M  +  +P++ T++ L+K+         +M V+ D++ +   P+ V++  L
Sbjct: 378 DAALATYSEMVRNGCSPNLCTYNALIKMHGVRGKFTEMMIVFDDLRSAGYVPDVVTWNTL 437

Query: 207 ATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILY---GYLAKGKDLERIWATVQE 263
                   L +      + ++K+       T   LI  Y   G   +  ++ +       
Sbjct: 438 LAVFGQNGLDSEVSGVFKEMKKAGYIPERDTYVSLISSYSRCGLFDQAMEIYKRMIEAGI 497

Query: 264 LPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATE-QYNSVISVYCKNGFIDK 322
            P++ + + VL+  A  R  +  +AE+L+ EM+  +  K  E  Y+S++  Y     +DK
Sbjct: 498 YPDISTYNAVLS--ALARGGRWVQAEKLFAEMED-RDCKPDELSYSSLLHAYANAKKLDK 554

Query: 323 ASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKA----------LELGM------ 366
              L +++     +P+    + L L   K N + E  KA          L++ +      
Sbjct: 555 MKALSEDIYAQRIEPHNWLVKTLVLVNNKVNSLSETEKAFQELRRRRCSLDINVLNAMVS 614

Query: 367 ------------KLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTK 414
                       +++T  K  S      T  S++ +++  GD    E +  E+K +    
Sbjct: 615 IYGKNKMVKKVEEVLTLMKENSINHSAATYNSLMHMYSRLGDCEKCEAILTEIKSSGMRP 674

Query: 415 YTFVYNTLIKAY-VKAKINDPN-LLRRMILGGARPDAETYSLL 455
             + YNT+I AY  K ++ + + L   M   G +PD  TY++ 
Sbjct: 675 DRYSYNTVIYAYGRKGQMKEASRLFSEMKCSGVKPDIVTYNIF 717



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 76/373 (20%), Positives = 151/373 (40%), Gaps = 20/373 (5%)

Query: 87  CIPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRR 146
           C P    N   YN L+     +G     +     +R  G+    + +N L+ +    G  
Sbjct: 392 CSP----NLCTYNALIKMHGVRGKFTEMMIVFDDLRSAGYVPDVVTWNTLLAVFGQNGLD 447

Query: 147 KTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCIL 206
             +  + ++MK     P   T+  L+   +     +  M++Y  M  + + P+  +Y  +
Sbjct: 448 SEVSGVFKEMKKAGYIPERDTYVSLISSYSRCGLFDQAMEIYKRMIEAGIYPDISTYNAV 507

Query: 207 ATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPN 266
            +A A    +  AE     +E      +  +   L+  Y   A  K L+++ A  +++  
Sbjct: 508 LSALARGGRWVQAEKLFAEMEDRDCKPDELSYSSLLHAY---ANAKKLDKMKALSEDIYA 564

Query: 267 VRSKSYVLAIEAF----GRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDK 322
            R + +   ++       ++  +S  E+ + E++  +        N+++S+Y KN  + K
Sbjct: 565 QRIEPHNWLVKTLVLVNNKVNSLSETEKAFQELRRRRCSLDINVLNAMVSIYGKNKMVKK 624

Query: 323 ASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLE 382
              +L  M  N    +A TY  L      S L +      E    ++T  K     P   
Sbjct: 625 VEEVLTLMKENSINHSAATYNSLMH--MYSRLGD-----CEKCEAILTEIKSSGMRPDRY 677

Query: 383 TTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKINDP--NLLRRM 440
           +  ++I  +  KG +  A  LF E+K +        YN  IK+YV   + +   +L+R +
Sbjct: 678 SYNTVIYAYGRKGQMKEASRLFSEMKCSGVKPDIVTYNIFIKSYVANLMFEEAIDLVRYL 737

Query: 441 ILGGARPDAETYS 453
           +  G +P+  TY+
Sbjct: 738 VAQGCKPNERTYN 750


>gi|302816541|ref|XP_002989949.1| hypothetical protein SELMODRAFT_130917 [Selaginella moellendorffii]
 gi|300142260|gb|EFJ08962.1| hypothetical protein SELMODRAFT_130917 [Selaginella moellendorffii]
          Length = 447

 Score = 75.9 bits (185), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 71/327 (21%), Positives = 137/327 (41%), Gaps = 17/327 (5%)

Query: 132 VFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDM 191
            +N LI      G+     ++   MK+  + P+ ST + L+        +   +K++ +M
Sbjct: 27  TYNVLIRGFCKGGQMHQAVSVFSDMKSSGLLPNASTMNTLLLGLCEIGQMSSALKLFREM 86

Query: 192 KRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKG 251
           +     P   S+ IL       R + +A   +E  ++         L+   IL   L+  
Sbjct: 87  QAGPFLPTSASHNILL------RGFFMAGRAIEFFKEMKASGVEPDLESYHILLSALSDS 140

Query: 252 KDLERIWATVQEL---PNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYN 308
             +    A    +   P++ +  Y + ++ + +I Q   A+ L  E+           Y+
Sbjct: 141 GRMAEAHALFSAMTCSPDIMT--YNVLMDGYCKIGQTYEAQSLMKEILKAGYEPNVFTYS 198

Query: 309 SVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKL 368
            +I+ YCK   +++A  +  +M  + C PNA+T+  L  G  K+ ++E+  K        
Sbjct: 199 IIINCYCKLDKVEEAWEVFMKMIESNCVPNAVTFNTLIAGFCKAGMLEDAIKLFA----- 253

Query: 369 ITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVK 428
              +K+      +     I  +  ++G V  A +LF +L+ A  T     YN+LI+ + +
Sbjct: 254 -EMEKIGCKATIVTYNTLIDSLCKKRGGVYTAVDLFNKLEGAGLTPTIVTYNSLIQGFSE 312

Query: 429 AKINDPNLLRRMILGGARPDAETYSLL 455
              +   LL  M   G +PD  TY+ L
Sbjct: 313 RANDGLRLLCHMHAEGCKPDVITYNCL 339



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 80/354 (22%), Positives = 147/354 (41%), Gaps = 68/354 (19%)

Query: 152 ILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHA 211
             ++MKA  V P + ++HIL+   ++   +     ++S M  S   P+ ++Y +L   + 
Sbjct: 114 FFKEMKASGVEPDLESYHILLSALSDSGRMAEAHALFSAMTCS---PDIMTYNVLMDGYC 170

Query: 212 -VARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQEL------ 264
            + + Y  A++ ++ + K+    N  T  ++I  Y  L K   +E  W    ++      
Sbjct: 171 KIGQTYE-AQSLMKEILKAGYEPNVFTYSIIINCYCKLDK---VEEAWEVFMKMIESNCV 226

Query: 265 PNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCK-------- 316
           PN  + + ++A   F +   +  A +L+ EM+ +        YN++I   CK        
Sbjct: 227 PNAVTFNTLIA--GFCKAGMLEDAIKLFAEMEKIGCKATIVTYNTLIDSLCKKRGGVYTA 284

Query: 317 -----------------------NGFIDKASG---LLKEMSMNGCKPNAITYRHLALGCF 350
                                   GF ++A+    LL  M   GCKP+ ITY  L  G  
Sbjct: 285 VDLFNKLEGAGLTPTIVTYNSLIQGFSERANDGLRLLCHMHAEGCKPDVITYNCLISGLC 344

Query: 351 KSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKA 410
            +N VE+  +    GM         +  P + T   +I     +  V  A N+ + +   
Sbjct: 345 SANRVEDAQRLFN-GM---------ACAPNVTTFNFLIRGLCAQKKVEEARNILDRMTAP 394

Query: 411 NYTKYTFVYNTLIKAYVKA-KINDP-NLLRRMILGGARPDAETYSLLKLAEQFQ 462
           + T     +NT+I A+ KA  ++D   +++ M+  G  P+  TY+   LA   Q
Sbjct: 395 DMT----TFNTIILAFCKAGAMHDAREVMKDMLKHGFYPN--TYTTYALAHGIQ 442


>gi|125600186|gb|EAZ39762.1| hypothetical protein OsJ_24200 [Oryza sativa Japonica Group]
          Length = 875

 Score = 75.9 bits (185), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 76/334 (22%), Positives = 137/334 (41%), Gaps = 14/334 (4%)

Query: 98  YNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMK 157
           YN ++      G +K +++    M   G +     FN LI +  S G  K    +   M 
Sbjct: 128 YNTMIDLYGKAGKLKDAMDMFMGMPDYGVAADTCTFNTLINIFGSCGNVKEAEALFASMI 187

Query: 158 ADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYT 217
                P V TF+++M + A+  ++EG++K Y  + +  +  + VSY I+       ++  
Sbjct: 188 VRGTNPDVKTFNVMMTLFASKGDVEGVLKHYYHIGKMGLSADTVSYGIVLRVLCERKMVH 247

Query: 218 VAETYVEALEKSMTGNNWSTLDVLIILY---GYLAKGKDLERIWATVQELPNVRSKSYVL 274
            AE  +  + +S T     +L V++ +Y   G L K            E   V SK++  
Sbjct: 248 EAEDVIVGIMRSGTCVPEQSLPVVMKMYIDQGLLDKANAFFDRHCRGDE---VSSKTFAA 304

Query: 275 AIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNG 334
            ++AF        AE ++   + V++ +   +YN ++  Y      D+ S LL+ M+ +G
Sbjct: 305 IMDAFAERGLWEEAEHVFYSHRGVRR-RGIVEYNVMVKAYGAAKRYDRVSPLLEHMNESG 363

Query: 335 CKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEK 394
             P+  T+  L            G+   +   KL+   K     P  ET  + I   +  
Sbjct: 364 ISPDECTFNSLV-----QMFATGGYP--QRAKKLLGKMKYAGFKPKCETYAAAITTLSRN 416

Query: 395 GDVGNAENLFEELKKANYTKYTFVYNTLIKAYVK 428
             V  A  L+ E+K +       VY  LI  + +
Sbjct: 417 YLVSEAIYLYNEMKASGVEPNVVVYGVLIDTFAE 450



 Score = 52.4 bits (124), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 49/236 (20%), Positives = 108/236 (45%), Gaps = 7/236 (2%)

Query: 118 MKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEAN 177
           ++ M   G S     FN L+ + ++ G  +    +L +MK     P   T+   +   + 
Sbjct: 356 LEHMNESGISPDECTFNSLVQMFATGGYPQRAKKLLGKMKYAGFKPKCETYAAAITTLSR 415

Query: 178 DHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWST 237
           ++ +   + +Y++MK S VEPN V Y +L    A       A  Y   +E+S    N   
Sbjct: 416 NYLVSEAIYLYNEMKASGVEPNVVVYGVLIDTFAETGQLEEALHYNNLMEESGIAPNQIV 475

Query: 238 LDVLIILYGYLAKGKDLERIWATVQEL---PNVRSKSYVLAIEAFGRIAQVSRAEELWLE 294
           L  LI  Y      K+ + +++ ++ +   P++ + + +L +  +  +  V++ +E++  
Sbjct: 476 LTSLIKAYSKANCWKEAQDLYSRMKSMDGGPDIVASNSMLNL--YANLGMVTKVKEIFDC 533

Query: 295 MQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCF 350
           ++   Q      Y S+IS+Y   G ++++  +  ++  +G   +  +Y  + + CF
Sbjct: 534 LRRNNQADDV-SYTSMISLYKNMGLLNESVRVAHDLQNSGLLSDCASYNAV-MACF 587



 Score = 49.3 bits (116), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 61/303 (20%), Positives = 121/303 (39%), Gaps = 11/303 (3%)

Query: 152 ILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHA 211
           +  +MKA  V P+V  + +L+   A    +E  +   + M+ S + PN++    L  A++
Sbjct: 425 LYNEMKASGVEPNVVVYGVLIDTFAETGQLEEALHYNNLMEESGIAPNQIVLTSLIKAYS 484

Query: 212 VARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSKS 271
            A  +  A+     ++    G +    + ++ LY  L     ++ I+  ++        S
Sbjct: 485 KANCWKEAQDLYSRMKSMDGGPDIVASNSMLNLYANLGMVTKVKEIFDCLRRNNQADDVS 544

Query: 272 YVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMS 331
           Y   I  +  +  ++ +  +  ++Q+   L     YN+V++ +   G + + + L+++M 
Sbjct: 545 YTSMISLYKNMGLLNESVRVAHDLQNSGLLSDCASYNAVMACFVAKGKLRECAELVQQMQ 604

Query: 332 MNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIF 391
                P+A T+  +     K  +  E    L+           RSS+    +   I  +F
Sbjct: 605 EGNILPDASTFGMIFSIMKKIQIAPEEVSQLQ-----SAYNDNRSSS----SQAVIAFLF 655

Query: 392 AEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKINDP--NLLRRMILGGARPDA 449
              G    A N+ E+  K   T      N   K Y      D   +L  +M   G +PD 
Sbjct: 656 LIAGMHAAALNICEKYMKPVLTIDQCACNVAFKVYASCGEVDKAFSLFMQMHELGLKPDT 715

Query: 450 ETY 452
            TY
Sbjct: 716 ATY 718



 Score = 39.7 bits (91), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 58/288 (20%), Positives = 120/288 (41%), Gaps = 39/288 (13%)

Query: 94  NELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNIL 153
           N ++Y  L+    + G ++ +L Y   M   G + + +V   LI   S     K   ++ 
Sbjct: 437 NVVVYGVLIDTFAETGQLEEALHYNNLMEESGIAPNQIVLTSLIKAYSKANCWKEAQDLY 496

Query: 154 RQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVA 213
            +MK+    P +   + ++ + AN   +  + +++  ++R+  + ++VSY  + + +   
Sbjct: 497 SRMKSMDGGPDIVASNSMLNLYANLGMVTKVKEIFDCLRRNN-QADDVSYTSMISLYKNM 555

Query: 214 RLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGK--DLERIWATVQE---LPNVR 268
            L   +      L+ S   ++ ++ +   ++  ++AKGK  +   +   +QE   LP+  
Sbjct: 556 GLLNESVRVAHDLQNSGLLSDCASYNA--VMACFVAKGKLRECAELVQQMQEGNILPDAS 613

Query: 269 SKSYVLAIEAFGRIA--QVSRAEELWLEMQS-----------------VKQLKATEQY-- 307
           +   + +I    +IA  +VS+ +  + + +S                    L   E+Y  
Sbjct: 614 TFGMIFSIMKKIQIAPEEVSQLQSAYNDNRSSSSQAVIAFLFLIAGMHAAALNICEKYMK 673

Query: 308 ----------NSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHL 345
                     N    VY   G +DKA  L  +M   G KP+  TY HL
Sbjct: 674 PVLTIDQCACNVAFKVYASCGEVDKAFSLFMQMHELGLKPDTATYIHL 721


>gi|41152688|dbj|BAD08213.1| hypothetical protein [Oryza sativa Indica Group]
          Length = 762

 Score = 75.9 bits (185), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 99/421 (23%), Positives = 177/421 (42%), Gaps = 26/421 (6%)

Query: 53  IRERPYRPKELDYSYLLEFTIKNHGISQGEKLFCCIPKD--YQNELLYNNLVIACLDKGV 110
           +R     P  + Y+ L+++  KN   ++  K+F  + K     +   Y  L+     KG 
Sbjct: 292 MRSDGVEPDVVTYNSLMDYLCKNGRSTEARKIFDSMTKRGLEPDIATYCTLLQGYATKGA 351

Query: 111 IKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHI 170
           +      +  M   G    + VFN LI   +   +      +  +M+   + P+V T+  
Sbjct: 352 LVEMHALLDLMVRNGIHPDHHVFNILICAYAKQEKVDEAMLVFSKMRQHGLNPNVVTYGA 411

Query: 171 LMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYV-EALEKS 229
           ++ I     +++  M  +  M    + PN + Y  L  +  +   +  AE  + E L++ 
Sbjct: 412 VIGILCKSGSVDDAMLYFEQMIDEGLTPNIIVYTSLIHSLCIFDKWDKAEELILEMLDRG 471

Query: 230 MTGNNWSTLDVLIILYGYLAKGKDLER-----IWATVQELPNVRSKSYVLAIEAFGRIAQ 284
           +  N   T+    I++ +  +G+ +E      +   +   PNV   +Y   I+ +    +
Sbjct: 472 ICLN---TIFFNSIIHSHCKEGRVIESEKLFDLMVRIGVKPNV--ITYSTLIDGYCLAGK 526

Query: 285 VSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRH 344
           +  A +L   M SV        YN++I+ YC+   +D A  L KEM  +G  PN ITY  
Sbjct: 527 MDEATKLLSSMFSVGMKPDCVTYNTLINGYCRVSRMDDALALFKEMVSSGVSPNIITYNI 586

Query: 345 LALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGN-AENL 403
           +  G F +       K L +G+        +S T    +T +II     K ++ + A  +
Sbjct: 587 ILQGLFHTRRTAAA-KELYVGI-------TKSGTQLELSTYNIILHGLCKNNLTDEALRM 638

Query: 404 FEELKKANYTKYTFVYNTLIKAYVKAKIND--PNLLRRMILGGARPDAETYSLL--KLAE 459
           F+ L   +    T  +N +I A +K   ND   +L   +   G  PD  TYSL+   L E
Sbjct: 639 FQNLCLTDLQLETRTFNIMIGALLKVGRNDEAKDLFAALSANGLVPDVRTYSLMAENLIE 698

Query: 460 Q 460
           Q
Sbjct: 699 Q 699



 Score = 68.6 bits (166), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 79/360 (21%), Positives = 146/360 (40%), Gaps = 50/360 (13%)

Query: 102 VIACLDKG-VIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADK 160
           +IA L KG  +  ++E +  M   G   + + +N ++    S  + K     L++M++D 
Sbjct: 237 IIAALCKGQAMDKAMEVLTTMVKNGVMPNCMTYNSILHGYCSSEQPKEAIGFLKKMRSDG 296

Query: 161 VAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAE 220
           V P V T++ LM     +       K++  M +  +EP+  +YC L   +A         
Sbjct: 297 VEPDVVTYNSLMDYLCKNGRSTEARKIFDSMTKRGLEPDIATYCTLLQGYATKGALVEMH 356

Query: 221 TYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQEL---PNVRSKSYVLAIE 277
             ++ + ++    +    ++LI  Y    K  +   +++ +++    PNV +        
Sbjct: 357 ALLDLMVRNGIHPDHHVFNILICAYAKQEKVDEAMLVFSKMRQHGLNPNVVT-------- 408

Query: 278 AFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKP 337
                                        Y +VI + CK+G +D A    ++M   G  P
Sbjct: 409 -----------------------------YGAVIGILCKSGSVDDAMLYFEQMIDEGLTP 439

Query: 338 NAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDV 397
           N I Y  L        + ++  KA EL ++++  + +  +T +     SII    ++G V
Sbjct: 440 NIIVYTSLI---HSLCIFDKWDKAEELILEML-DRGICLNTIFFN---SIIHSHCKEGRV 492

Query: 398 GNAENLFEELKKANYTKYTFVYNTLIKAYVKAKIND--PNLLRRMILGGARPDAETYSLL 455
             +E LF+ + +         Y+TLI  Y  A   D    LL  M   G +PD  TY+ L
Sbjct: 493 IESEKLFDLMVRIGVKPNVITYSTLIDGYCLAGKMDEATKLLSSMFSVGMKPDCVTYNTL 552



 Score = 62.4 bits (150), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 53/198 (26%), Positives = 82/198 (41%), Gaps = 13/198 (6%)

Query: 271 SYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEM 330
           SY   I  F +     +A   + EM   +       Y+S+I+  CK   +DKA  +L  M
Sbjct: 198 SYTTVINGFFKEGDSDKAYSTYHEMLDRRISPDVVTYSSIIAALCKGQAMDKAMEVLTTM 257

Query: 331 SMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSST--PWLETTLSII 388
             NG  PN +TY  +  G   S   +E    L         KK+RS    P + T  S++
Sbjct: 258 VKNGVMPNCMTYNSILHGYCSSEQPKEAIGFL---------KKMRSDGVEPDVVTYNSLM 308

Query: 389 EIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVK--AKINDPNLLRRMILGGAR 446
           +   + G    A  +F+ + K         Y TL++ Y    A +    LL  M+  G  
Sbjct: 309 DYLCKNGRSTEARKIFDSMTKRGLEPDIATYCTLLQGYATKGALVEMHALLDLMVRNGIH 368

Query: 447 PDAETYSLLKLAEQFQKK 464
           PD   +++L  A   Q+K
Sbjct: 369 PDHHVFNILICAYAKQEK 386



 Score = 40.8 bits (94), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 61/265 (23%), Positives = 105/265 (39%), Gaps = 39/265 (14%)

Query: 94  NELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNIL 153
           N + +N+++ +   +G +  S +    M  +G   + + ++ LI      G+      +L
Sbjct: 475 NTIFFNSIIHSHCKEGRVIESEKLFDLMVRIGVKPNVITYSTLIDGYCLAGKMDEATKLL 534

Query: 154 RQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVA 213
             M +  + P   T++ L+        ++  + ++ +M  S V PN ++Y I+       
Sbjct: 535 SSMFSVGMKPDCVTYNTLINGYCRVSRMDDALALFKEMVSSGVSPNIITYNIILQGLFHT 594

Query: 214 RLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSKSYV 273
           R    A+     + KS T    ST +  IIL+G L K                       
Sbjct: 595 RRTAAAKELYVGITKSGTQLELSTYN--IILHG-LCKNN--------------------- 630

Query: 274 LAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMN 333
           L  EA  R+ Q     +L LE         T  +N +I    K G  D+A  L   +S N
Sbjct: 631 LTDEAL-RMFQNLCLTDLQLE---------TRTFNIMIGALLKVGRNDEAKDLFAALSAN 680

Query: 334 GCKPNAITYRHLALGCFKSNLVEEG 358
           G  P+  TY  +A      NL+E+G
Sbjct: 681 GLVPDVRTYSLMA-----ENLIEQG 700



 Score = 39.7 bits (91), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 32/135 (23%), Positives = 60/135 (44%), Gaps = 6/135 (4%)

Query: 321 DKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPW 380
           D    +L+ M+   C P+  +   L  G    N  +E   ALEL + ++   +   S P 
Sbjct: 140 DAMDIVLRRMTELSCMPDVFSCTILLKGLCDENRSQE---ALEL-LHMMADDRGGGSAPD 195

Query: 381 LETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKINDPNL--LR 438
           + +  ++I  F ++GD   A + + E+     +     Y+++I A  K +  D  +  L 
Sbjct: 196 VVSYTTVINGFFKEGDSDKAYSTYHEMLDRRISPDVVTYSSIIAALCKGQAMDKAMEVLT 255

Query: 439 RMILGGARPDAETYS 453
            M+  G  P+  TY+
Sbjct: 256 TMVKNGVMPNCMTYN 270


>gi|168059281|ref|XP_001781632.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162666946|gb|EDQ53588.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 871

 Score = 75.9 bits (185), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 66/294 (22%), Positives = 123/294 (41%), Gaps = 18/294 (6%)

Query: 78  ISQGEKLFCCIPKDYQNELLYNNLVIACLDKGV-IKLSLEYMKKMRVLGHSISYLVFNRL 136
           + Q  K   C P    N + YN ++ AC   GV +K +L+   +M+  G     + FN L
Sbjct: 257 VFQAMKKAGCKP----NLITYNTIIDACGKGGVDLKQALDIFDEMQKEGVEPDRITFNSL 312

Query: 137 IILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEV 196
           I + S  G  +    +  +M+   +   + TF+ L+        +E    + + M+   +
Sbjct: 313 IAVCSRGGLWEDSQRVFAEMQRRGIEQDIFTFNTLIDAVCKGGQMELAASIMTTMRGKNI 372

Query: 197 EPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAK------ 250
            PN V+Y  +   +     +  A +    +++S    +  + + LI +Y  L +      
Sbjct: 373 SPNVVTYSTMIDGYGKLGCFEEAISLYHDMKESGVRPDRVSYNTLIDIYAKLGRFDDALI 432

Query: 251 -GKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNS 309
             KD+ER+      +      +Y   I+A+G+  +   A  L+ +M+    +     Y++
Sbjct: 433 ACKDMERVGLKADVV------TYNALIDAYGKQGKYKDAACLFDKMKGEGLVPNVLTYSA 486

Query: 310 VISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALE 363
           +I  Y K G     S +  E    G KP+ + Y  L   C K  LVE+    L+
Sbjct: 487 LIDSYSKAGMHQDVSNVFTEFKRAGLKPDVVLYSSLIDSCCKCGLVEDAVVLLQ 540



 Score = 73.2 bits (178), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 71/366 (19%), Positives = 160/366 (43%), Gaps = 22/366 (6%)

Query: 100 NLVIACLDK-GVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKA 158
           +++I+ L + G ++++L+   + +  G   +   ++ ++      GR +    + + MK 
Sbjct: 204 SIMISTLGRLGKVEIALDVFNRAQKAGFGNNVYAYSAMVSAYGRSGRCREALKVFQAMKK 263

Query: 159 DKVAPHVSTFHILMKIEANDH-NIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYT 217
               P++ T++ ++        +++  + ++ +M++  VEP+ +++  L    +   L+ 
Sbjct: 264 AGCKPNLITYNTIIDACGKGGVDLKQALDIFDEMQKEGVEPDRITFNSLIAVCSRGGLWE 323

Query: 218 VAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQEL------PNVRSKS 271
            ++     +++     +  T + LI     + KG  +E   + +  +      PNV   +
Sbjct: 324 DSQRVFAEMQRRGIEQDIFTFNTLI---DAVCKGGQMELAASIMTTMRGKNISPNV--VT 378

Query: 272 YVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMS 331
           Y   I+ +G++     A  L+ +M+          YN++I +Y K G  D A    K+M 
Sbjct: 379 YSTMIDGYGKLGCFEEAISLYHDMKESGVRPDRVSYNTLIDIYAKLGRFDDALIACKDME 438

Query: 332 MNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIF 391
             G K + +TY  L     K    ++          L    K     P + T  ++I+ +
Sbjct: 439 RVGLKADVVTYNALIDAYGKQGKYKDA-------ACLFDKMKGEGLVPNVLTYSALIDSY 491

Query: 392 AEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKINDPN--LLRRMILGGARPDA 449
           ++ G   +  N+F E K+A       +Y++LI +  K  + +    LL+ M   G +P+ 
Sbjct: 492 SKAGMHQDVSNVFTEFKRAGLKPDVVLYSSLIDSCCKCGLVEDAVVLLQEMTQAGIQPNI 551

Query: 450 ETYSLL 455
            TY+ L
Sbjct: 552 VTYNSL 557



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 81/406 (19%), Positives = 140/406 (34%), Gaps = 86/406 (21%)

Query: 94  NELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNIL 153
           + + +N+L+  C   G+ + S     +M+  G       FN LI      G+ +   +I+
Sbjct: 305 DRITFNSLIAVCSRGGLWEDSQRVFAEMQRRGIEQDIFTFNTLIDAVCKGGQMELAASIM 364

Query: 154 RQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVA 213
             M+   ++P+V T+  ++         E  + +Y DMK S V P+ VSY  L   +A  
Sbjct: 365 TTMRGKNISPNVVTYSTMIDGYGKLGCFEEAISLYHDMKESGVRPDRVSYNTLIDIYAKL 424

Query: 214 RLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQE---LPNVRSK 270
             +  A    + +E+     +  T + LI  YG   K KD   ++  ++    +PNV + 
Sbjct: 425 GRFDDALIACKDMERVGLKADVVTYNALIDAYGKQGKYKDAACLFDKMKGEGLVPNVLTY 484

Query: 271 S---------------------------------YVLAIEAFGRIAQVSRAEELWLEMQS 297
           S                                 Y   I++  +   V  A  L  EM  
Sbjct: 485 SALIDSYSKAGMHQDVSNVFTEFKRAGLKPDVVLYSSLIDSCCKCGLVEDAVVLLQEMTQ 544

Query: 298 VKQLKATEQYNSVISVYCKNGFIDK----------------------------------- 322
                    YNS+I  Y + G  DK                                   
Sbjct: 545 AGIQPNIVTYNSLIDAYGRYGQADKLEAVKANMPNSVQKIGERSMEVVRKPPPSQQNASD 604

Query: 323 ------ASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRS 376
                 A  +  EM   G KPN +T+  +   C +   ++E    LE         ++R 
Sbjct: 605 HTGVLAAVSVFHEMQQFGLKPNVVTFSAILNACSRCASLQEASVLLE---------QMRF 655

Query: 377 STPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTL 422
              W+      + +   +     A+ LF+E+ + +Y      YN L
Sbjct: 656 FDGWVYGIAHGLLMGLREQVWVEAQRLFDEISRMDYATGAAFYNAL 701



 Score = 55.8 bits (133), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 39/161 (24%), Positives = 72/161 (44%), Gaps = 6/161 (3%)

Query: 269 SKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLK 328
           SK   + I   GR+ +V  A +++   Q          Y++++S Y ++G   +A  + +
Sbjct: 200 SKLASIMISTLGRLGKVEIALDVFNRAQKAGFGNNVYAYSAMVSAYGRSGRCREALKVFQ 259

Query: 329 EMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSII 388
            M   GCKPN ITY  +   C K  +       L+  + +    +     P   T  S+I
Sbjct: 260 AMKKAGCKPNLITYNTIIDACGKGGV------DLKQALDIFDEMQKEGVEPDRITFNSLI 313

Query: 389 EIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKA 429
            + +  G   +++ +F E+++    +  F +NTLI A  K 
Sbjct: 314 AVCSRGGLWEDSQRVFAEMQRRGIEQDIFTFNTLIDAVCKG 354


>gi|410110149|gb|AFV61154.1| pentatricopeptide repeat-containing protein 123, partial
           [Xeroaloysia ovatifolia]
          Length = 431

 Score = 75.9 bits (185), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 75/322 (23%), Positives = 151/322 (46%), Gaps = 22/322 (6%)

Query: 98  YNNLVIACLDKGVIKLSLEYMKKM---RVLGHSISYLVFNRLIILNSSPGRRKTIPNILR 154
           Y+ L+     +G+   +L +++KM   RV G  + Y   + LI L+          +I  
Sbjct: 15  YSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLY---SNLIELSRKLCDYSKAISIFS 71

Query: 155 QMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVAR 214
           ++K     P +  ++ ++ +            + S+M+ + V PN  SY  L T +   +
Sbjct: 72  RLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVMPNTASYTTLLTMYVENK 131

Query: 215 LYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQEL---PNVRSKS 271
            +  A +    + +     + +T +++I +YG L   K+ ++++  ++++   PNV S +
Sbjct: 132 KFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYN 191

Query: 272 YVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMS 331
            +L +  +G       A  L+  MQ    ++    YNS++ +Y K    +KA+ L++EM 
Sbjct: 192 TLLRV--YGDAELFGEAIHLFRLMQRKNIVQNVVTYNSMMMIYGKTLEHEKANNLIQEMQ 249

Query: 332 MNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTL--SIIE 389
             G +PN+ITY         S ++    KA +L    +  +K+RSS   ++  L  ++I 
Sbjct: 250 NRGIEPNSITY---------STIISIWGKAGKLDRAAMLFQKLRSSGVEIDQVLYQTMIV 300

Query: 390 IFAEKGDVGNAENLFEELKKAN 411
            + + G V +A+ L  ELK  +
Sbjct: 301 AYEKAGLVAHAKRLLHELKSPD 322



 Score = 41.6 bits (96), Expect = 0.87,   Method: Compositional matrix adjust.
 Identities = 53/245 (21%), Positives = 96/245 (39%), Gaps = 45/245 (18%)

Query: 189 SDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYL 248
            +M+   + P+  +Y  L T      L+  A ++++ +E+     +       ++LY  L
Sbjct: 1   DEMRERALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGD-------LVLYSNL 53

Query: 249 AKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYN 308
               +L R           +   Y  AI  F R+ +     +L               YN
Sbjct: 54  I---ELSR-----------KLCDYSKAISIFSRLKRSGFTPDLV-------------AYN 86

Query: 309 SVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKL 368
           ++I+V+ K     +A  L+ EM   G  PN  +Y  L        +  E  K LE    L
Sbjct: 87  AMINVFGKAKLFREARSLISEMRTAGVMPNTASYTTLL------TMYVENKKFLE---AL 137

Query: 369 ITTKKVRSSTPWLETTLS--IIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAY 426
               ++R     L+ T    +I+++ + G    A+ LF  ++K         YNTL++ Y
Sbjct: 138 SVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVY 197

Query: 427 VKAKI 431
             A++
Sbjct: 198 GDAEL 202


>gi|168002263|ref|XP_001753833.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162694809|gb|EDQ81155.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 779

 Score = 75.9 bits (185), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 74/363 (20%), Positives = 146/363 (40%), Gaps = 10/363 (2%)

Query: 96  LLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQ 155
           + YN L+ AC  +G+++ +    + M   G     + +N L+ +     R + +  +LR+
Sbjct: 181 ITYNTLLSACSSRGLVEEAGMVFRTMNEAGVVPDSITYNALVDIYGQADRHEGVGELLRE 240

Query: 156 MKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARL 215
           M+    AP V  ++IL++            K++  M+ +   P+ V++  L  A+     
Sbjct: 241 MEQAGNAPDVVAYNILIEAYGRAGKYRAAAKMFKQMQEAGCTPDVVTFSTLLEAYGKHGC 300

Query: 216 YTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKD-LERIWATVQELPNVRSKSYVL 274
           Y         +++  T  + +T + LI ++G     ++ +   W  +         +Y  
Sbjct: 301 YDEVRLLFTDMKERGTEPDVNTYNTLIQVFGQGGFFQESINLFWDLLDGGVEPDMSTYAG 360

Query: 275 AIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNG 334
            + + G+      A+++   M        T+ +  +I+ Y       +A+     M  +G
Sbjct: 361 LLYSCGKGGLHKAAKKIHRHMLQSYVTPTTDGFTGLITAYGNAALYSEATYAFNSMKESG 420

Query: 335 CKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEK 394
           CKP+  TY  L +G         G    E G   +T      S   + T  S+IE F   
Sbjct: 421 CKPDLETYNAL-IGAHAG-----GGLYCEAGSAYLTMIDEGISAD-VSTYNSLIEAFGRG 473

Query: 395 GDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKINDPNLLRRMIL--GGARPDAETY 452
           G   +A     ++++A  +     Y  L+  Y  A + D    + + L  GG  P  ++Y
Sbjct: 474 GLFDDAIEFSRDMEEARCSPNRHTYEALMGVYCTAGLFDEAKAQFLDLQVGGELPSVDSY 533

Query: 453 SLL 455
            LL
Sbjct: 534 CLL 536



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 78/377 (20%), Positives = 162/377 (42%), Gaps = 23/377 (6%)

Query: 87  CIPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRR 146
           C P    NE +Y  ++     +G++  + E  + M +     +   F  LI      G+ 
Sbjct: 70  CKP----NEHVYTIMIGIMGREGMLDKASELFEDMPLNDVEWNVYSFTALINAYGRNGQH 125

Query: 147 KTIPNILRQMKADKVAPHVSTFHILMKIEANDH-NIEGLMKVYSDMKRSEVEPNEVSYCI 205
           +   ++L +MK +KV P++ T++ ++   A      EGL+ +++ M+   ++P+ ++Y  
Sbjct: 126 EASLHLLARMKREKVTPNLITYNTVINACAKGGLEWEGLLGLFAQMRHEGIQPDIITYNT 185

Query: 206 LATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELP 265
           L +A +   L   A      + ++    +  T + L+ +YG   + + +  +   +++  
Sbjct: 186 LLSACSSRGLVEEAGMVFRTMNEAGVVPDSITYNALVDIYGQADRHEGVGELLREMEQAG 245

Query: 266 NVRS-KSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKAS 324
           N     +Y + IEA+GR  +   A +++ +MQ          +++++  Y K+G  D+  
Sbjct: 246 NAPDVVAYNILIEAYGRAGKYRAAAKMFKQMQEAGCTPDVVTFSTLLEAYGKHGCYDEVR 305

Query: 325 GLLKEMSMNGCKPNAITYRHL----ALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPW 380
            L  +M   G +P+  TY  L      G F    +   +  L+ G++           P 
Sbjct: 306 LLFTDMKERGTEPDVNTYNTLIQVFGQGGFFQESINLFWDLLDGGVE-----------PD 354

Query: 381 LETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKINDPNL--LR 438
           + T   ++    + G    A+ +   + ++  T  T  +  LI AY  A +         
Sbjct: 355 MSTYAGLLYSCGKGGLHKAAKKIHRHMLQSYVTPTTDGFTGLITAYGNAALYSEATYAFN 414

Query: 439 RMILGGARPDAETYSLL 455
            M   G +PD ETY+ L
Sbjct: 415 SMKESGCKPDLETYNAL 431



 Score = 59.3 bits (142), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 55/236 (23%), Positives = 96/236 (40%), Gaps = 7/236 (2%)

Query: 132 VFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDM 191
            +N LI +    G  +   N+   +    V P +ST+  L+         +   K++  M
Sbjct: 322 TYNTLIQVFGQGGFFQESINLFWDLLDGGVEPDMSTYAGLLYSCGKGGLHKAAKKIHRHM 381

Query: 192 KRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYG----Y 247
            +S V P    +  L TA+  A LY+ A     ++++S    +  T + LI  +     Y
Sbjct: 382 LQSYVTPTTDGFTGLITAYGNAALYSEATYAFNSMKESGCKPDLETYNALIGAHAGGGLY 441

Query: 248 LAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQY 307
              G     +   + E  +    +Y   IEAFGR      A E   +M+  +       Y
Sbjct: 442 CEAGSAYLTM---IDEGISADVSTYNSLIEAFGRGGLFDDAIEFSRDMEEARCSPNRHTY 498

Query: 308 NSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALE 363
            +++ VYC  G  D+A     ++ + G  P+  +Y  L   C + N  ++  K LE
Sbjct: 499 EALMGVYCTAGLFDEAKAQFLDLQVGGELPSVDSYCLLLSVCARRNRWDDASKVLE 554


>gi|37572999|dbj|BAC98691.1| putative fertility restorer homologue [Oryza sativa Japonica Group]
 gi|222640519|gb|EEE68651.1| hypothetical protein OsJ_27230 [Oryza sativa Japonica Group]
          Length = 691

 Score = 75.5 bits (184), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 71/336 (21%), Positives = 141/336 (41%), Gaps = 14/336 (4%)

Query: 94  NELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNIL 153
           N + YN ++   +  G ++       +M   G   + + +N L+      GR      +L
Sbjct: 234 NHITYNTMIDGHIKGGDLEAGFRLRDQMVCHGLKPNAITYNVLLSGLCRAGRMGETSALL 293

Query: 154 RQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVA 213
            +M + K+ P   T+ IL    + + + + ++ ++    ++ V   + +  IL       
Sbjct: 294 DEMASQKMVPDGFTYSILFDGLSRNGDSKAMLSLFGKYLKNGVTIGDYTCSILLNGLCKD 353

Query: 214 RLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSK--- 270
              ++AE  +++L  +         + LI   GY   G +LE  ++T  ++ +   K   
Sbjct: 354 GKVSIAEEVLQSLVNAGLVPTRVIYNTLI--NGYCQTG-ELEGAFSTFGQMKSRHIKPDH 410

Query: 271 -SYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKE 329
            +Y   I    +  +++ A++L +EMQ        E +N++I  Y + G ++K   +L E
Sbjct: 411 ITYNALINGLCKAERITNAQDLLMEMQDNGVNPTVETFNTLIDAYGRTGQLEKCFIVLSE 470

Query: 330 MSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIE 389
           M  NG KPN ++Y  +     K+  + E    L+           +   P  +   +II+
Sbjct: 471 MQENGLKPNVVSYGSIVNAFCKNGKIPEAVAILDDMFH-------KDVLPNAQVYNAIID 523

Query: 390 IFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKA 425
            + E G    A  L E++K    +     YN LIK 
Sbjct: 524 AYVEHGPNDQAFILVEKMKSNGISPSIVTYNLLIKG 559



 Score = 69.3 bits (168), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 75/383 (19%), Positives = 152/383 (39%), Gaps = 59/383 (15%)

Query: 88  IPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRK 147
           +P  +   +L++ L      K ++ L  +Y+K    +G     ++ N L       G+  
Sbjct: 302 VPDGFTYSILFDGLSRNGDSKAMLSLFGKYLKNGVTIGDYTCSILLNGLC----KDGKVS 357

Query: 148 TIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILA 207
               +L+ +    + P    ++ L+        +EG    +  MK   ++P+ ++Y  L 
Sbjct: 358 IAEEVLQSLVNAGLVPTRVIYNTLINGYCQTGELEGAFSTFGQMKSRHIKPDHITYNALI 417

Query: 208 TAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQEL--- 264
                A   T A+  +  ++ +       T + LI  YG   +   LE+ +  + E+   
Sbjct: 418 NGLCKAERITNAQDLLMEMQDNGVNPTVETFNTLIDAYGRTGQ---LEKCFIVLSEMQEN 474

Query: 265 ---PNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFID 321
              PNV   SY   + AF +  ++  A  +  +M     L   + YN++I  Y ++G  D
Sbjct: 475 GLKPNV--VSYGSIVNAFCKNGKIPEAVAILDDMFHKDVLPNAQVYNAIIDAYVEHGPND 532

Query: 322 KASGLLKEMSMNGCKPNAITYRHLALG--------------------------------- 348
           +A  L+++M  NG  P+ +TY  L  G                                 
Sbjct: 533 QAFILVEKMKSNGISPSIVTYNLLIKGLCNQSQISEAEEIINSLSNHRLIPDAVSYNTLI 592

Query: 349 ---CFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFE 405
              C++ N+     KAL+L  ++     ++S+   + T   +I      G +   E L++
Sbjct: 593 SACCYRGNI----DKALDLQQRM-HKYGIKST---VRTYHQLISGLGGAGRLNEMEYLYQ 644

Query: 406 ELKKANYTKYTFVYNTLIKAYVK 428
           ++ + N      ++N +++AY K
Sbjct: 645 KMMQNNVVPSNAIHNIMVEAYSK 667



 Score = 61.6 bits (148), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 84/394 (21%), Positives = 161/394 (40%), Gaps = 40/394 (10%)

Query: 98  YNNLVIACLDKGVIKLSLEYMKKM-RVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQM 156
           +N  V AC+  G +  ++  +++M R      +   +N +I      GR      +  +M
Sbjct: 167 WNKAVQACVAAGDLGEAVGMLRRMGRDGAPPPNAFSYNVVIAGMWRAGRGGDAVEVFDEM 226

Query: 157 KADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVA-RL 215
               V P+  T++ ++       ++E   ++   M    ++PN ++Y +L +    A R+
Sbjct: 227 TERAVLPNHITYNTMIDGHIKGGDLEAGFRLRDQMVCHGLKPNAITYNVLLSGLCRAGRM 286

Query: 216 YTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQE-LPN-VRSKSYV 273
              +    E   + M  + ++      IL+  L++  D + + +   + L N V    Y 
Sbjct: 287 GETSALLDEMASQKMVPDGFT----YSILFDGLSRNGDSKAMLSLFGKYLKNGVTIGDYT 342

Query: 274 LAI--EAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMS 331
            +I      +  +VS AEE+   + +   +     YN++I+ YC+ G ++ A     +M 
Sbjct: 343 CSILLNGLCKDGKVSIAEEVLQSLVNAGLVPTRVIYNTLINGYCQTGELEGAFSTFGQMK 402

Query: 332 MNGCKPNAITYRHLALGCFKS------------------NLVEEGFKAL--------ELG 365
               KP+ ITY  L  G  K+                  N   E F  L        +L 
Sbjct: 403 SRHIKPDHITYNALINGLCKAERITNAQDLLMEMQDNGVNPTVETFNTLIDAYGRTGQLE 462

Query: 366 MKLITTKKVRSST--PWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLI 423
              I   +++ +   P + +  SI+  F + G +  A  + +++   +      VYN +I
Sbjct: 463 KCFIVLSEMQENGLKPNVVSYGSIVNAFCKNGKIPEAVAILDDMFHKDVLPNAQVYNAII 522

Query: 424 KAYVKAKINDPN--LLRRMILGGARPDAETYSLL 455
            AYV+   ND    L+ +M   G  P   TY+LL
Sbjct: 523 DAYVEHGPNDQAFILVEKMKSNGISPSIVTYNLL 556


>gi|297803282|ref|XP_002869525.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297315361|gb|EFH45784.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 707

 Score = 75.5 bits (184), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 92/411 (22%), Positives = 181/411 (44%), Gaps = 23/411 (5%)

Query: 52  VIRERPYRPKELD---YSYLLEFTIKNHGISQGEKLFCCIPK--DYQNELLYNNLVIACL 106
           +++E  ++  E D   Y+ L+        + +G+ LF  + +  D    + YN L+    
Sbjct: 234 LLKEMKHKGLEADLIVYTSLIRGFCDCGELDRGKALFDEVLERGDSPCAITYNTLIRGFC 293

Query: 107 DKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVS 166
             G +K + E  + M   G   +   +  LI      G+ K    +L  M      P+V 
Sbjct: 294 KLGRLKEASEIFEFMMERGVRPNVYTYTGLIDGLCGVGKTKEALQLLNLMLQKDEEPNVV 353

Query: 167 TFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSY-CILATAHAVARLYTVAET-YVE 224
           T++I++     D  +   +++   MK+    P+ ++Y  +L    A   L   ++  Y+ 
Sbjct: 354 TYNIIINKLCKDSLVADALEIVELMKKRRTRPDNITYNSLLGGLCAKGDLDEASKLLYLM 413

Query: 225 ALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWAT----VQELPNVRSKSYVLAIEAFG 280
             + S T  +  + + LI  +G L KG  L +        V++L      +  + + +  
Sbjct: 414 LKDSSYTDPDVISFNALI--HG-LCKGNRLHQALDIYDLLVEKLGAGDIVTTNILLNSTL 470

Query: 281 RIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAI 340
           +   V++A ELW ++ + K +  ++ Y ++I  +CK G ++ A GLL +M ++   P+  
Sbjct: 471 KSGDVNKAMELWKQISNSKIVPNSDTYTTMIDGFCKTGMLNVAKGLLCKMRLSELPPSVF 530

Query: 341 TYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNA 400
            Y      C  S+L ++G   L+   +L    +   S P + +   +I+   + GD+ +A
Sbjct: 531 DYN-----CLLSSLCKKG--TLDQAWRLFEEMQRDDSFPDVISFNIMIDGSLKAGDIKSA 583

Query: 401 ENLFEELKKANYTKYTFVYNTLIKAYVKAKINDP--NLLRRMILGGARPDA 449
           E+L   +  A  +   F Y+ LI  ++K    D   +   +MI  G  PDA
Sbjct: 584 ESLLVGMSHAGLSPDLFTYSKLINRFLKLGYLDEAISFFDKMIDSGFEPDA 634



 Score = 56.2 bits (134), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 46/187 (24%), Positives = 87/187 (46%), Gaps = 9/187 (4%)

Query: 271 SYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEM 330
           +Y + ++   R  +  +A  L  EM+    +     YN+VI  +C+   ++KA  L  EM
Sbjct: 144 NYNILLKGLCRNLEFGKAVSLLREMRQNSLMPDVVSYNTVIRGFCEGKELEKALQLANEM 203

Query: 331 SMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEI 390
             +GC  + +T+  L     K+  ++E        M L+   K +     L    S+I  
Sbjct: 204 QGSGCSWSLVTWGILIDAFCKAGKMDE-------AMGLLKEMKHKGLEADLIVYTSLIRG 256

Query: 391 FAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVK-AKINDPN-LLRRMILGGARPD 448
           F + G++   + LF+E+ +   +     YNTLI+ + K  ++ + + +   M+  G RP+
Sbjct: 257 FCDCGELDRGKALFDEVLERGDSPCAITYNTLIRGFCKLGRLKEASEIFEFMMERGVRPN 316

Query: 449 AETYSLL 455
             TY+ L
Sbjct: 317 VYTYTGL 323



 Score = 52.0 bits (123), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 51/194 (26%), Positives = 82/194 (42%), Gaps = 11/194 (5%)

Query: 264 LPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKA 323
           +P+V   SY   I  F    ++ +A +L  EMQ      +   +  +I  +CK G +D+A
Sbjct: 174 MPDV--VSYNTVIRGFCEGKELEKALQLANEMQGSGCSWSLVTWGILIDAFCKAGKMDEA 231

Query: 324 SGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLET 383
            GLLKEM   G + + I Y  L  G       + G   L+ G  L      R  +P   T
Sbjct: 232 MGLLKEMKHKGLEADLIVYTSLIRG-----FCDCG--ELDRGKALFDEVLERGDSPCAIT 284

Query: 384 TLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVK-AKINDP-NLLRRMI 441
             ++I  F + G +  A  +FE + +       + Y  LI       K  +   LL  M+
Sbjct: 285 YNTLIRGFCKLGRLKEASEIFEFMMERGVRPNVYTYTGLIDGLCGVGKTKEALQLLNLML 344

Query: 442 LGGARPDAETYSLL 455
                P+  TY+++
Sbjct: 345 QKDEEPNVVTYNII 358


>gi|224079730|ref|XP_002305930.1| predicted protein [Populus trichocarpa]
 gi|222848894|gb|EEE86441.1| predicted protein [Populus trichocarpa]
          Length = 470

 Score = 75.5 bits (184), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 86/376 (22%), Positives = 150/376 (39%), Gaps = 22/376 (5%)

Query: 87  CIPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRR 146
           C P DY    + N L       G   L+    KKM   G  ++ + ++ LI       R 
Sbjct: 76  CQPDDYTYTTIINGLC----KIGETALAAGLFKKMEEAGCQLNVVTYSTLIHSLCKYRRV 131

Query: 147 KTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCIL 206
               +I   MKA  ++P + T+  L++   N    +    + ++M    + PN V++ +L
Sbjct: 132 NEALDIFSYMKAKDISPTIFTYTSLIQGLCNFSRWKEASALLNEMTSLNIMPNVVTFNVL 191

Query: 207 ATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGY-----LAKGKDLERIWATV 261
                       AE  ++ + +     +  T + L  +YGY     + + + L  +  T 
Sbjct: 192 VDTFCKEGKVLAAEGVLKTMTEMGVEPDVVTYNSL--MYGYSMWTEVVEARKLFDVMITK 249

Query: 262 QELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFID 321
              P+V S  Y + I  + +  ++  A++L+ EM           YN++I   C+ G + 
Sbjct: 250 GCKPDVFS--YSILINGYCKAKRIDEAKQLFNEMIHQGSTPNNVSYNTLIHGLCQLGRLR 307

Query: 322 KASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWL 381
           +A  L K M  NG  PN  TY  L  G  K   + + F+       L    +     P L
Sbjct: 308 EAQDLFKNMHTNGNLPNLYTYAILLDGFCKQGYLGKAFR-------LFRAMQSTYLKPNL 360

Query: 382 ETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKINDPNL--LRR 439
                ++    + G++ +A  LF EL          +Y T+I    K  + D  L   R 
Sbjct: 361 VMYNILVNAMCKSGNLKDARELFSELFVIGLQPNVQIYTTIINGLCKEGLLDEALEAFRN 420

Query: 440 MILGGARPDAETYSLL 455
           M   G  PD  +Y+++
Sbjct: 421 MEDDGCPPDEFSYNVI 436



 Score = 58.9 bits (141), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 45/187 (24%), Positives = 78/187 (41%), Gaps = 9/187 (4%)

Query: 271 SYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEM 330
           ++   I   G++ + ++A EL+ +M +         Y ++I+  CK G    A+GL K+M
Sbjct: 47  TFTTLINGLGKVGKFAQAVELFDDMVARGCQPDDYTYTTIINGLCKIGETALAAGLFKKM 106

Query: 331 SMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEI 390
              GC+ N +TY  L     K   V E        + + +  K +  +P + T  S+I+ 
Sbjct: 107 EEAGCQLNVVTYSTLIHSLCKYRRVNE-------ALDIFSYMKAKDISPTIFTYTSLIQG 159

Query: 391 FAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAK--INDPNLLRRMILGGARPD 448
                    A  L  E+   N       +N L+  + K    +    +L+ M   G  PD
Sbjct: 160 LCNFSRWKEASALLNEMTSLNIMPNVVTFNVLVDTFCKEGKVLAAEGVLKTMTEMGVEPD 219

Query: 449 AETYSLL 455
             TY+ L
Sbjct: 220 VVTYNSL 226



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 62/262 (23%), Positives = 107/262 (40%), Gaps = 13/262 (4%)

Query: 94  NELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNIL 153
           N + +N LV     +G +  +   +K M  +G     + +N L+   S          + 
Sbjct: 184 NVVTFNVLVDTFCKEGKVLAAEGVLKTMTEMGVEPDVVTYNSLMYGYSMWTEVVEARKLF 243

Query: 154 RQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVA 213
             M      P V ++ IL+        I+   +++++M      PN VSY  L   H + 
Sbjct: 244 DVMITKGCKPDVFSYSILINGYCKAKRIDEAKQLFNEMIHQGSTPNNVSYNTLI--HGLC 301

Query: 214 RLYTVAETYVEALEKSM-TGNNWSTLDVLIILY------GYLAKGKDLERIWATVQELPN 266
           +L  + E   + L K+M T  N   L    IL       GYL K   L R   +    PN
Sbjct: 302 QLGRLRE--AQDLFKNMHTNGNLPNLYTYAILLDGFCKQGYLGKAFRLFRAMQSTYLKPN 359

Query: 267 VRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGL 326
           +    Y + + A  +   +  A EL+ E+  +      + Y ++I+  CK G +D+A   
Sbjct: 360 L--VMYNILVNAMCKSGNLKDARELFSELFVIGLQPNVQIYTTIINGLCKEGLLDEALEA 417

Query: 327 LKEMSMNGCKPNAITYRHLALG 348
            + M  +GC P+  +Y  +  G
Sbjct: 418 FRNMEDDGCPPDEFSYNVIIRG 439


>gi|291622148|emb|CBJ23784.1| pentatricopeptide (PPR) repeat-containing protein [Arabidopsis
           thaliana]
          Length = 630

 Score = 75.5 bits (184), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 80/338 (23%), Positives = 143/338 (42%), Gaps = 35/338 (10%)

Query: 151 NILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAH 210
           N+ ++M+   + P+V T+  L+    N        ++ SDM   ++ P+  ++  L  A 
Sbjct: 277 NLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKINPDVFTFSALIDAF 336

Query: 211 AV-ARLYTVAETYVEALEKSMTGN--NWSTLDVLIILYGYLAKGKDLERIWATVQELPNV 267
               +L    + Y E +++S+  +   +S+L     ++  L + K +     +    P+V
Sbjct: 337 VKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQMFEFMVSKHCFPDV 396

Query: 268 RSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLL 327
              SY   I+ F +  +V    EL+ EM     +  T  Y ++I    + G  D A  + 
Sbjct: 397 --VSYSTLIKGFCKAKRVDEGMELFREMSQRGLVGNTVTYTTLIQGLFQAGDCDMAQEIF 454

Query: 328 KEMSMNGCKPNAITYRHLALGCFKS-------------------------NLVEEGF-KA 361
           KEM  +G  PN +TY  L  G  K+                         N++ EG  KA
Sbjct: 455 KEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKA 514

Query: 362 --LELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVY 419
             +E G  L     ++   P +    ++I  F  KG    A+ LF+E+K+      +  Y
Sbjct: 515 GKVEDGWDLFCNLSLKGVKPDVVAYNTMISGFCRKGSKEEADALFKEMKEDGTLPNSGCY 574

Query: 420 NTLIKAYVKAKINDPN--LLRRMILGGARPDAETYSLL 455
           NTLI+A ++    + +  L++ M   G   DA T  L+
Sbjct: 575 NTLIRARLRDGDREASAELIKEMRSCGFAGDASTIGLV 612



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 48/187 (25%), Positives = 81/187 (43%), Gaps = 9/187 (4%)

Query: 271 SYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEM 330
           +Y + I  F R +Q+  A  +  +M  +         +S+++ YC +  I +A  L+ +M
Sbjct: 118 TYSILINCFCRRSQLPLALAVLGKMMKLGYEPNIVTLSSLLNGYCHSKRISEAVALVDQM 177

Query: 331 SMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEI 390
            + G +PN +T+  L  G F  N   E        + LI     +   P L T   ++  
Sbjct: 178 FVTGYQPNTVTFNTLIHGLFLHNKASE-------AVALIDRMVAKGCQPDLVTYGVVVNG 230

Query: 391 FAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKINDP--NLLRRMILGGARPD 448
             ++GD   A  L  ++++        +Y T+I    K K  D   NL + M   G RP+
Sbjct: 231 LCKRGDTDLAFILLNKMEQGKLEPGVLIYTTIIDGLCKNKHMDDALNLFKEMETKGIRPN 290

Query: 449 AETYSLL 455
             TYS L
Sbjct: 291 VVTYSSL 297


>gi|147817754|emb|CAN66662.1| hypothetical protein VITISV_031722 [Vitis vinifera]
          Length = 1060

 Score = 75.5 bits (184), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 76/350 (21%), Positives = 147/350 (42%), Gaps = 25/350 (7%)

Query: 94  NELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILN------SSPGRRK 147
           N + Y  L+  C  +G      +++K  R+    I   +F  ++I            R  
Sbjct: 192 NVVTYGTLIDGCCRQG------DFLKAFRLFDEMIEKKIFPTVVIYTILIRGLCGESRIS 245

Query: 148 TIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILA 207
              ++ R M+   + P++ T++ +M       +++  +++Y +M    + PN V++ IL 
Sbjct: 246 EAESMFRTMRNSGMLPNLYTYNTMMDGYCKIAHVKKALELYXEMLGDGLLPNVVTFGILI 305

Query: 208 TAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILY---GYLAKGKDLERIWATVQEL 264
                      A  ++  +       N    + LI  Y   G L++   L       + L
Sbjct: 306 DGLCKTDEMVSARKFLIDMASFGVVPNIFVYNCLIDGYCKAGNLSEALSLHSEIEKHEIL 365

Query: 265 PNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKAS 324
           P+V +  Y + I+    + ++  A+ L  EM+    L     YN++I  YCK G ++KA 
Sbjct: 366 PDVFT--YSILIKGLCGVDRMEEADGLLQEMKKKGFLPNAVTYNTLIDGYCKEGNMEKAI 423

Query: 325 GLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETT 384
            +  +M+  G +PN IT+  L  G  K+         +E  M L T   ++   P +   
Sbjct: 424 EVCSQMTEKGIEPNIITFSTLIDGYCKAG-------KMEAAMGLYTEMVIKGLLPDVVAY 476

Query: 385 LSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVK-AKIND 433
            ++I+   + G+   A  L +E+++A      F  + LI    K  +I+D
Sbjct: 477 TALIDGHFKDGNTKEAFRLHKEMQEAGLHPNVFTLSCLIDGLCKDGRISD 526



 Score = 61.6 bits (148), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 90/433 (20%), Positives = 179/433 (41%), Gaps = 32/433 (7%)

Query: 44  RALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQGEKLFCCIPKD--YQNELLYNNL 101
           +A  + + +I ++ + P  + Y+ L+        IS+ E +F  +       N   YN +
Sbjct: 211 KAFRLFDEMIEKKIF-PTVVIYTILIRGLCGESRISEAESMFRTMRNSGMLPNLYTYNTM 269

Query: 102 VIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKV 161
           +        +K +LE   +M   G   + + F  LI          +    L  M +  V
Sbjct: 270 MDGYCKIAHVKKALELYXEMLGDGLLPNVVTFGILIDGLCKTDEMVSARKFLIDMASFGV 329

Query: 162 APHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAET 221
            P++  ++ L+       N+   + ++S++++ E+ P+  +Y IL            A+ 
Sbjct: 330 VPNIFVYNCLIDGYCKAGNLSEALSLHSEIEKHEILPDVFTYSILIKGLCGVDRMEEADG 389

Query: 222 YVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQEL------PNVRSKSYVLA 275
            ++ ++K     N  T + LI   GY  +G ++E+      ++      PN+ + S +  
Sbjct: 390 LLQEMKKKGFLPNAVTYNTLI--DGYCKEG-NMEKAIEVCSQMTEKGIEPNIITFSTL-- 444

Query: 276 IEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGC 335
           I+ + +  ++  A  L+ EM     L     Y ++I  + K+G   +A  L KEM   G 
Sbjct: 445 IDGYCKAGKMEAAMGLYTEMVIKGLLPDVVAYTALIDGHFKDGNTKEAFRLHKEMQEAGL 504

Query: 336 KPNAITYRHLALGCFKSNLVEEG--FKALELGMKLITTKKVRSSTPWLETTL-------- 385
            PN  T     L C    L ++G    A++L +    T    S T  L+ +L        
Sbjct: 505 HPNVFT-----LSCLIDGLCKDGRISDAIKLFLAKTGTDTTGSKTNELDRSLCSPNHVMY 559

Query: 386 -SIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKA-KINDPNLLRRMILG 443
            ++I+     G +  A   F +++ +      F    +I+ + +A  + D  +L+  IL 
Sbjct: 560 TALIQGLCTDGRIFKASKFFSDMRCSGLRPDVFTCIVIIQGHFRAMHLRDVMMLQADILK 619

Query: 444 -GARPDAETYSLL 455
            G  P++  Y +L
Sbjct: 620 MGIIPNSSVYRVL 632



 Score = 58.5 bits (140), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 80/338 (23%), Positives = 133/338 (39%), Gaps = 35/338 (10%)

Query: 132 VFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDM 191
           VF  LII  S  G  +    +  +M    V P +   ++++         + + KVY DM
Sbjct: 128 VFGVLIIAFSEMGLVEEALWVYYKMD---VLPAMQACNMVLDGLVKKGRFDTMWKVYGDM 184

Query: 192 KRSEVEPNEVSYCILATAHAVARLYTVA-ETYVEALEKSMTGNNWSTLDVLIILYGYLAK 250
                 PN V+Y  L         +  A   + E +EK +           +++Y  L +
Sbjct: 185 VARGASPNVVTYGTLIDGCCRQGDFLKAFRLFDEMIEKKIFPT--------VVIYTILIR 236

Query: 251 G-------KDLERIWATVQE---LPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQ 300
           G        + E ++ T++    LPN+   +Y   ++ + +IA V +A EL+ EM     
Sbjct: 237 GLCGESRISEAESMFRTMRNSGMLPNLY--TYNTMMDGYCKIAHVKKALELYXEMLGDGL 294

Query: 301 LKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALG-CFKSNLVEEGF 359
           L     +  +I   CK   +  A   L +M+  G  PN   Y  L  G C   NL E   
Sbjct: 295 LPNVVTFGILIDGLCKTDEMVSARKFLIDMASFGVVPNIFVYNCLIDGYCKAGNLSE--- 351

Query: 360 KALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVY 419
                 + L +  +     P + T   +I+       +  A+ L +E+KK  +      Y
Sbjct: 352 -----ALSLHSEIEKHEILPDVFTYSILIKGLCGVDRMEEADGLLQEMKKKGFLPNAVTY 406

Query: 420 NTLIKAYVKAKINDP--NLLRRMILGGARPDAETYSLL 455
           NTLI  Y K    +    +  +M   G  P+  T+S L
Sbjct: 407 NTLIDGYCKEGNMEKAIEVCSQMTEKGIEPNIITFSTL 444



 Score = 47.8 bits (112), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 48/193 (24%), Positives = 80/193 (41%), Gaps = 16/193 (8%)

Query: 265 PNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKAS 324
           PNV    + + I AF  +  V   E LW+  + +  L A +  N V+    K G  D   
Sbjct: 126 PNV----FGVLIIAFSEMGLVE--EALWVYYK-MDVLPAMQACNMVLDGLVKKGRFDTMW 178

Query: 325 GLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETT 384
            +  +M   G  PN +TY  L  GC +     +  KA  L  ++I  K      P +   
Sbjct: 179 KVYGDMVARGASPNVVTYGTLIDGCCRQG---DFLKAFRLFDEMIEKKIF----PTVVIY 231

Query: 385 LSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVK-AKINDP-NLLRRMIL 442
             +I     +  +  AE++F  ++ +      + YNT++  Y K A +     L   M+ 
Sbjct: 232 TILIRGLCGESRISEAESMFRTMRNSGMLPNLYTYNTMMDGYCKIAHVKKALELYXEMLG 291

Query: 443 GGARPDAETYSLL 455
            G  P+  T+ +L
Sbjct: 292 DGLLPNVVTFGIL 304


>gi|326488077|dbj|BAJ89877.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 395

 Score = 75.5 bits (184), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 80/345 (23%), Positives = 138/345 (40%), Gaps = 20/345 (5%)

Query: 116 EYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIE 175
           E +KK   LG S+    +N LI              +  +MK     P   T+H+++   
Sbjct: 55  ELVKKFENLGVSLKTGSYNALICGLVDEDLIDIAEELFSEMKRLGCDPDEFTYHLILDAM 114

Query: 176 ANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVA-ETYVEALEKSMTGNN 234
                IE ++K+  +M     +   V+Y  + +    +++   A   Y + + +   G +
Sbjct: 115 GKSMRIEDMLKIQEEMHNKGYKSTYVTYNTIISGLVKSKMLDEAINLYYQLMSE---GFS 171

Query: 235 WSTLDVLIILYGYLAKG--KDLERIWATVQEL---PNVRSKSYVLAIEAFGRIAQVSRAE 289
            +      +L G L  G  +D E ++  + E    PN     Y + +  +       +  
Sbjct: 172 PTPCTYGPLLDGLLKDGNIEDAEALFDEMLECGCEPNC--AIYNILLNGYRIAGDTEKVC 229

Query: 290 ELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGC 349
           EL+  M         + Y  VI   C +G ++      K+++  G +P+ ITY  L  G 
Sbjct: 230 ELFESMVEQGMNPDIKSYTVVIDTLCADGRLNDGLSYFKQLTDMGLEPDLITYNLLIHGL 289

Query: 350 FKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKK 409
            KS  +EE        + L    + +   P L T  S+I    + G    A  ++EEL  
Sbjct: 290 GKSGRLEEA-------LSLYNDMEKKGIAPNLYTYNSLILYLGKAGKAAEAGKMYEELLA 342

Query: 410 ANYTKYTFVYNTLIKAY--VKAKINDPNLLRRMILGGARPDAETY 452
             +    F YN LI+ Y    +  N      RMI+GG RP++ TY
Sbjct: 343 KGWKPNVFTYNALIRGYSVSGSPENAFAAYGRMIVGGCRPNSSTY 387



 Score = 56.6 bits (135), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 88/358 (24%), Positives = 147/358 (41%), Gaps = 27/358 (7%)

Query: 36  LRKLQLNKRALEVMEWV--IRERPYRPKELDYSYLLEFTIKNHGISQGEKLFC------C 87
           +R L  +K AL   E V          K   Y+ L+   +    I   E+LF       C
Sbjct: 41  IRHLCKHKEALAAHELVKKFENLGVSLKTGSYNALICGLVDEDLIDIAEELFSEMKRLGC 100

Query: 88  IPKDYQNELLYNNLVIACLDKGV-IKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRR 146
            P    +E  Y+ L++  + K + I+  L+  ++M   G+  +Y+ +N +I   S   + 
Sbjct: 101 DP----DEFTYH-LILDAMGKSMRIEDMLKIQEEMHNKGYKSTYVTYNTII---SGLVKS 152

Query: 147 KTIP---NILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSY 203
           K +    N+  Q+ ++  +P   T+  L+     D NIE    ++ +M     EPN   Y
Sbjct: 153 KMLDEAINLYYQLMSEGFSPTPCTYGPLLDGLLKDGNIEDAEALFDEMLECGCEPNCAIY 212

Query: 204 CILATAHAVA-RLYTVAETYVEALEKSMTGNNWSTLDVLIILY--GYLAKGKDLERIWAT 260
            IL   + +A     V E +   +E+ M  +  S   V+  L   G L  G    +    
Sbjct: 213 NILLNGYRIAGDTEKVCELFESMVEQGMNPDIKSYTVVIDTLCADGRLNDGLSYFKQLTD 272

Query: 261 VQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFI 320
           +   P++ +  Y L I   G+  ++  A  L+ +M+          YNS+I    K G  
Sbjct: 273 MGLEPDLIT--YNLLIHGLGKSGRLEEALSLYNDMEKKGIAPNLYTYNSLILYLGKAGKA 330

Query: 321 DKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSST 378
            +A  + +E+   G KPN  TY  L  G   S   E  F A   G  ++   +  SST
Sbjct: 331 AEAGKMYEELLAKGWKPNVFTYNALIRGYSVSGSPENAFAA--YGRMIVGGCRPNSST 386



 Score = 47.4 bits (111), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 45/198 (22%), Positives = 80/198 (40%), Gaps = 30/198 (15%)

Query: 288 AEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLAL 347
           A EL  + +++     T  YN++I        ID A  L  EM   GC P+  TY  +  
Sbjct: 53  AHELVKKFENLGVSLKTGSYNALICGLVDEDLIDIAEELFSEMKRLGCDPDEFTYHLILD 112

Query: 348 GCFKSNLVEE-----------GFKALELGMKLITTKKVRSS-----------------TP 379
              KS  +E+           G+K+  +    I +  V+S                  +P
Sbjct: 113 AMGKSMRIEDMLKIQEEMHNKGYKSTYVTYNTIISGLVKSKMLDEAINLYYQLMSEGFSP 172

Query: 380 WLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKINDP--NLL 437
              T   +++   + G++ +AE LF+E+ +        +YN L+  Y  A   +    L 
Sbjct: 173 TPCTYGPLLDGLLKDGNIEDAEALFDEMLECGCEPNCAIYNILLNGYRIAGDTEKVCELF 232

Query: 438 RRMILGGARPDAETYSLL 455
             M+  G  PD ++Y+++
Sbjct: 233 ESMVEQGMNPDIKSYTVV 250



 Score = 40.4 bits (93), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 45/198 (22%), Positives = 82/198 (41%), Gaps = 31/198 (15%)

Query: 271 SYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEM 330
           +Y L ++A G+  ++    ++  EM +         YN++IS   K+  +D+A  L  ++
Sbjct: 106 TYHLILDAMGKSMRIEDMLKIQEEMHNKGYKSTYVTYNTIISGLVKSKMLDEAINLYYQL 165

Query: 331 SMNGCKPNAITYRHLALGCFKSNLVEEG----FKALELGMK--------LITTKKVRSST 378
              G  P   TY  L  G  K   +E+      + LE G +        L+   ++   T
Sbjct: 166 MSEGFSPTPCTYGPLLDGLLKDGNIEDAEALFDEMLECGCEPNCAIYNILLNGYRIAGDT 225

Query: 379 PWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKINDP-NLL 437
                   + E+F         E++ E+    +   YT V +TL       ++ND  +  
Sbjct: 226 E------KVCELF---------ESMVEQGMNPDIKSYTVVIDTLC---ADGRLNDGLSYF 267

Query: 438 RRMILGGARPDAETYSLL 455
           +++   G  PD  TY+LL
Sbjct: 268 KQLTDMGLEPDLITYNLL 285


>gi|215768057|dbj|BAH00286.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 506

 Score = 75.5 bits (184), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 71/336 (21%), Positives = 141/336 (41%), Gaps = 14/336 (4%)

Query: 94  NELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNIL 153
           N + YN ++   +  G ++       +M   G   + + +N L+      GR      +L
Sbjct: 49  NHITYNTMIDGHIKGGDLEAGFRLRDQMVCHGLKPNAITYNVLLSGLCRAGRMGETSALL 108

Query: 154 RQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVA 213
            +M + K+ P   T+ IL    + + + + ++ ++    ++ V   + +  IL       
Sbjct: 109 DEMASQKMVPDGFTYSILFDGLSRNGDSKAMLSLFGKYLKNGVTIGDYTCSILLNGLCKD 168

Query: 214 RLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSK--- 270
              ++AE  +++L  +         + LI   GY   G +LE  ++T  ++ +   K   
Sbjct: 169 GKVSIAEEVLQSLVNAGLVPTRVIYNTLI--NGYCQTG-ELEGAFSTFGQMKSRHIKPDH 225

Query: 271 -SYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKE 329
            +Y   I    +  +++ A++L +EMQ        E +N++I  Y + G ++K   +L E
Sbjct: 226 ITYNALINGLCKAERITNAQDLLMEMQDNGVNPTVETFNTLIDAYGRTGQLEKCFIVLSE 285

Query: 330 MSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIE 389
           M  NG KPN ++Y  +     K+  + E    L+           +   P  +   +II+
Sbjct: 286 MQENGLKPNVVSYGSIVNAFCKNGKIPEAVAILDDMFH-------KDVLPNAQVYNAIID 338

Query: 390 IFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKA 425
            + E G    A  L E++K    +     YN LIK 
Sbjct: 339 AYVEHGPNDQAFILVEKMKSNGISPSIVTYNLLIKG 374



 Score = 69.3 bits (168), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 75/383 (19%), Positives = 152/383 (39%), Gaps = 59/383 (15%)

Query: 88  IPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRK 147
           +P  +   +L++ L      K ++ L  +Y+K    +G     ++ N L       G+  
Sbjct: 117 VPDGFTYSILFDGLSRNGDSKAMLSLFGKYLKNGVTIGDYTCSILLNGL----CKDGKVS 172

Query: 148 TIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILA 207
               +L+ +    + P    ++ L+        +EG    +  MK   ++P+ ++Y  L 
Sbjct: 173 IAEEVLQSLVNAGLVPTRVIYNTLINGYCQTGELEGAFSTFGQMKSRHIKPDHITYNALI 232

Query: 208 TAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQEL--- 264
                A   T A+  +  ++ +       T + LI  YG   +   LE+ +  + E+   
Sbjct: 233 NGLCKAERITNAQDLLMEMQDNGVNPTVETFNTLIDAYGRTGQ---LEKCFIVLSEMQEN 289

Query: 265 ---PNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFID 321
              PNV   SY   + AF +  ++  A  +  +M     L   + YN++I  Y ++G  D
Sbjct: 290 GLKPNV--VSYGSIVNAFCKNGKIPEAVAILDDMFHKDVLPNAQVYNAIIDAYVEHGPND 347

Query: 322 KASGLLKEMSMNGCKPNAITYRHLALG--------------------------------- 348
           +A  L+++M  NG  P+ +TY  L  G                                 
Sbjct: 348 QAFILVEKMKSNGISPSIVTYNLLIKGLCNQSQISEAEEIINSLSNHRLIPDAVSYNTLI 407

Query: 349 ---CFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFE 405
              C++ N+     KAL+L  ++     ++S+   + T   +I      G +   E L++
Sbjct: 408 SACCYRGNI----DKALDLQQRM-HKYGIKST---VRTYHQLISGLGGAGRLNEMEYLYQ 459

Query: 406 ELKKANYTKYTFVYNTLIKAYVK 428
           ++ + N      ++N +++AY K
Sbjct: 460 KMMQNNVVPSNAIHNIMVEAYSK 482



 Score = 58.5 bits (140), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 74/347 (21%), Positives = 139/347 (40%), Gaps = 39/347 (11%)

Query: 144 GRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSY 203
           GR      +  +M    V P+  T++ ++       ++E   ++   M    ++PN ++Y
Sbjct: 29  GRGGDAVEVFDEMTERAVLPNHITYNTMIDGHIKGGDLEAGFRLRDQMVCHGLKPNAITY 88

Query: 204 CILATAHAVA-RLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQ 262
            +L +    A R+   +    E   + M  + ++      IL+  L++  D + + +   
Sbjct: 89  NVLLSGLCRAGRMGETSALLDEMASQKMVPDGFT----YSILFDGLSRNGDSKAMLSLFG 144

Query: 263 E-LPN-VRSKSYVLAI--EAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNG 318
           + L N V    Y  +I      +  +VS AEE+   + +   +     YN++I+ YC+ G
Sbjct: 145 KYLKNGVTIGDYTCSILLNGLCKDGKVSIAEEVLQSLVNAGLVPTRVIYNTLINGYCQTG 204

Query: 319 FIDKASGLLKEMSMNGCKPNAITYRHLALGCFKS------------------NLVEEGFK 360
            ++ A     +M     KP+ ITY  L  G  K+                  N   E F 
Sbjct: 205 ELEGAFSTFGQMKSRHIKPDHITYNALINGLCKAERITNAQDLLMEMQDNGVNPTVETFN 264

Query: 361 A----------LELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKA 410
                      LE    +++  +     P + +  SI+  F + G +  A  + +++   
Sbjct: 265 TLIDAYGRTGQLEKCFIVLSEMQENGLKPNVVSYGSIVNAFCKNGKIPEAVAILDDMFHK 324

Query: 411 NYTKYTFVYNTLIKAYVKAKINDPN--LLRRMILGGARPDAETYSLL 455
           +      VYN +I AYV+   ND    L+ +M   G  P   TY+LL
Sbjct: 325 DVLPNAQVYNAIIDAYVEHGPNDQAFILVEKMKSNGISPSIVTYNLL 371



 Score = 47.4 bits (111), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 48/192 (25%), Positives = 75/192 (39%), Gaps = 28/192 (14%)

Query: 265 PNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKAS 324
           P   + SY + I    R  +   A E++ EM     L     YN++I  + K G ++   
Sbjct: 11  PPPNAFSYNVVIAGMWRAGRGGDAVEVFDEMTERAVLPNHITYNTMIDGHIKGGDLEAGF 70

Query: 325 GLLKEMSMNGCKPNAITYRHLALGCFKSN----------------LVEEGFKALEL---- 364
            L  +M  +G KPNAITY  L  G  ++                 +V +GF    L    
Sbjct: 71  RLRDQMVCHGLKPNAITYNVLLSGLCRAGRMGETSALLDEMASQKMVPDGFTYSILFDGL 130

Query: 365 -------GMKLITTKKVRSSTPWLETTLSI-IEIFAEKGDVGNAENLFEELKKANYTKYT 416
                   M  +  K +++     + T SI +    + G V  AE + + L  A      
Sbjct: 131 SRNGDSKAMLSLFGKYLKNGVTIGDYTCSILLNGLCKDGKVSIAEEVLQSLVNAGLVPTR 190

Query: 417 FVYNTLIKAYVK 428
            +YNTLI  Y +
Sbjct: 191 VIYNTLINGYCQ 202


>gi|356498873|ref|XP_003518272.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09900-like [Glycine max]
          Length = 566

 Score = 75.5 bits (184), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 88/398 (22%), Positives = 157/398 (39%), Gaps = 52/398 (13%)

Query: 98  YNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMK 157
           YN L+ A    G I+ +L  +    V  ++ +Y   + ++      G+ K    +L +  
Sbjct: 142 YNVLINAYCKSGEIEEALRVLDHTSVAPNAATY---DAVLCSLCDRGKLKQAMQVLDRQL 198

Query: 158 ADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATA-------- 209
             K  P V T  +L+     +  +   MK++++M+    +P+ V+Y +L           
Sbjct: 199 QSKCYPDVVTCTVLIDATCKESGVGQAMKLFNEMRGKGCKPDVVTYNVLIKGFCKEGRLD 258

Query: 210 HAVARLYTVAETYVEA--------LEKSMTGNNW-------------------STLDVLI 242
            A+  L  +     ++        L    +G  W                    T ++LI
Sbjct: 259 EAIIFLKKLPSYGCQSDVISHNMILRSLCSGGRWMDAMKLLATMLRKGCFPSVVTFNILI 318

Query: 243 ILY---GYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVK 299
                 G L K  ++  +       PN  S+S+   I+ F     + RA E    M S  
Sbjct: 319 NFLCQKGLLGKALNVLEMMPKHGHTPN--SRSFNPLIQGFCNRKGIDRAIEHLEIMVSRG 376

Query: 300 QLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGF 359
                  YN +++  CK+G +D A  +L ++S  GC P+ I+Y  +  G  K        
Sbjct: 377 CYPDIVTYNILLTALCKDGKVDDAVVILSQLSSKGCSPSLISYNTVIDGLLKVG------ 430

Query: 360 KALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVY 419
           KA EL ++L+     +   P L T  S++   + +G V  A   F  LK        F+Y
Sbjct: 431 KA-ELAVELLEEMCYKGLKPDLITCTSVVGGLSREGKVHEAIKFFHYLKGFGIKPNAFIY 489

Query: 420 NTLIKAYVKAKIND--PNLLRRMILGGARPDAETYSLL 455
           N+++    KA+      + L  M+  G +P   +Y+ L
Sbjct: 490 NSIMMGLCKAQQTSLAIDFLVDMVANGCKPTEASYTTL 527



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 51/216 (23%), Positives = 98/216 (45%), Gaps = 14/216 (6%)

Query: 242 IILYGYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQL 301
           +I  G L +G           ++P+V + + +  I  F +I +   A  +   ++    +
Sbjct: 79  LIRNGELEEGSRFLEYMTNKGKIPDVVACTAL--IREFCKIGRTKNATRIMGILEESGAV 136

Query: 302 KATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKA 361
                YN +I+ YCK+G I++A  +L   S+    PNA TY   A+ C   +L + G   
Sbjct: 137 IDANSYNVLINAYCKSGEIEEALRVLDHTSV---APNAATYD--AVLC---SLCDRG--K 186

Query: 362 LELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNT 421
           L+  M+++  +      P + T   +I+   ++  VG A  LF E++          YN 
Sbjct: 187 LKQAMQVLDRQLQSKCYPDVVTCTVLIDATCKESGVGQAMKLFNEMRGKGCKPDVVTYNV 246

Query: 422 LIKAYVKAKINDPNL--LRRMILGGARPDAETYSLL 455
           LIK + K    D  +  L+++   G + D  +++++
Sbjct: 247 LIKGFCKEGRLDEAIIFLKKLPSYGCQSDVISHNMI 282



 Score = 51.6 bits (122), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 81/365 (22%), Positives = 144/365 (39%), Gaps = 57/365 (15%)

Query: 43  KRALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQGEKLF------CCIPKDYQNEL 96
           K+A++V++  ++ + Y P  +  + L++ T K  G+ Q  KLF       C P    + +
Sbjct: 188 KQAMQVLDRQLQSKCY-PDVVTCTVLIDATCKESGVGQAMKLFNEMRGKGCKP----DVV 242

Query: 97  LYNNLVIACLDKGVIKLSLEYMKKM-------RVLGHSI--------------------- 128
            YN L+     +G +  ++ ++KK+        V+ H++                     
Sbjct: 243 TYNVLIKGFCKEGRLDEAIIFLKKLPSYGCQSDVISHNMILRSLCSGGRWMDAMKLLATM 302

Query: 129 -------SYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNI 181
                  S + FN LI      G      N+L  M      P+  +F+ L++   N   I
Sbjct: 303 LRKGCFPSVVTFNILINFLCQKGLLGKALNVLEMMPKHGHTPNSRSFNPLIQGFCNRKGI 362

Query: 182 EGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVL 241
           +  ++    M      P+ V+Y IL TA  + +   V +  V   + S  G + S +   
Sbjct: 363 DRAIEHLEIMVSRGCYPDIVTYNILLTA--LCKDGKVDDAVVILSQLSSKGCSPSLISYN 420

Query: 242 IILYGYLAKGKDLERIWATVQEL------PNVRSKSYVLAIEAFGRIAQVSRAEELWLEM 295
            ++ G L  GK  E     ++E+      P++ + + V+      R  +V  A + +  +
Sbjct: 421 TVIDGLLKVGK-AELAVELLEEMCYKGLKPDLITCTSVVG--GLSREGKVHEAIKFFHYL 477

Query: 296 QSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLV 355
           +          YNS++   CK      A   L +M  NGCKP   +Y  L  G     L 
Sbjct: 478 KGFGIKPNAFIYNSIMMGLCKAQQTSLAIDFLVDMVANGCKPTEASYTTLIKGITYEGLA 537

Query: 356 EEGFK 360
           EE  K
Sbjct: 538 EEASK 542


>gi|242067235|ref|XP_002448894.1| hypothetical protein SORBIDRAFT_05g000986 [Sorghum bicolor]
 gi|241934737|gb|EES07882.1| hypothetical protein SORBIDRAFT_05g000986 [Sorghum bicolor]
          Length = 796

 Score = 75.5 bits (184), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 95/405 (23%), Positives = 169/405 (41%), Gaps = 20/405 (4%)

Query: 60  PKELDYSYLLEFTIKNHGISQGEKLF-CCIPKDYQNEL-LYNNLVIACLDKGVIKLSLEY 117
           P    Y  LL++  K    ++  KLF   I K  + ++ +Y  ++     KG +     +
Sbjct: 307 PDCFTYGLLLDYLCKKGKCTEARKLFDSMIRKGIKPDVSIYGIILHGYATKGALSEMHSF 366

Query: 118 MKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEAN 177
           +  M   G S ++ +FN +    +         +I  +M+   ++P+V  +  L+     
Sbjct: 367 LDLMVGNGISPNHYIFNIVFCAFAKKAMIGEAMDIFNKMRQQGLSPNVVNYATLIDALCK 426

Query: 178 DHNIEGLMKVYSDMKRSEVEPNEVSYCILATA-HAVARLYTVAETYVEALEKSMTGNN-- 234
              ++     ++ M    V PN V +  L      + +     E + E + + +  N   
Sbjct: 427 LGRVDDAELKFNQMINEGVAPNIVVFTSLVYGLCTIDKWEKAGELFFEMVNQGIHPNVVF 486

Query: 235 WSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLE 294
           ++T+   +   G + K + L  +   V   P++   SY   I     + +   A +L   
Sbjct: 487 FNTIMCNLCTEGRVMKAQRLIDLMERVGTRPDI--ISYNALIRGHCLVGKTDEASKLLDI 544

Query: 295 MQSVKQLKATE-QYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSN 353
           M SV  LK  E  YN+++  YC++G ID A  + +EM  NG  P  +TY  +  G FK+ 
Sbjct: 545 MLSVG-LKPNECTYNTLLHGYCRDGRIDDAYSVFQEMLSNGITPVVVTYNTILHGLFKTR 603

Query: 354 LVEEGFKALELGMKLITTKKVRSSTPWLETTLSII-EIFAEKGDVGNAENLFEELKKANY 412
              E   A EL + +IT+ K      W   T +II    ++   V  A  +F+ L   + 
Sbjct: 604 RFSE---AKELYLNMITSGK-----QWSIYTYNIILNGLSKNNCVDEALKMFQSLCSKDL 655

Query: 413 TKYTFVYNTLIKAYVKA--KINDPNLLRRMILGGARPDAETYSLL 455
                 +N +I A +K   K +  NL   +   G  PD  TY L+
Sbjct: 656 QVDIITFNIMIGALLKDGRKEDAMNLFATISANGLVPDVTTYRLI 700



 Score = 65.5 bits (158), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 47/144 (32%), Positives = 70/144 (48%), Gaps = 7/144 (4%)

Query: 315 CKNGFIDKASG-LLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKK 373
           C    + +A G LL+ MS  GC PN ++Y  L  G    N  EE   ALEL + ++   +
Sbjct: 141 CDAKRVGEAMGVLLRRMSELGCTPNVVSYNTLLKGFCDENRAEE---ALEL-LHMMADGQ 196

Query: 374 VRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKIND 433
           VRS  P L +  ++I  F  +G V  A NLF ++           Y  +I    KA++ D
Sbjct: 197 VRSCPPNLVSYNTVINGFFTEGQVDKAYNLFLDMTDQGIPPNVVTYTIVIDGLCKAQVVD 256

Query: 434 --PNLLRRMILGGARPDAETYSLL 455
               + ++MI  G RP+  TY+ L
Sbjct: 257 RAEGVFQQMIDKGVRPNIVTYTCL 280



 Score = 47.8 bits (112), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 51/197 (25%), Positives = 82/197 (41%), Gaps = 16/197 (8%)

Query: 265 PNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATE----QYNSVISVYCKNGFI 320
           PNV   SY   ++ F    +   A EL L M +  Q+++       YN+VI+ +   G +
Sbjct: 164 PNV--VSYNTLLKGFCDENRAEEALEL-LHMMADGQVRSCPPNLVSYNTVINGFFTEGQV 220

Query: 321 DKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPW 380
           DKA  L  +M+  G  PN +TY  +  G  K+ +V+      E   + +  K VR   P 
Sbjct: 221 DKAYNLFLDMTDQGIPPNVVTYTIVIDGLCKAQVVDRA----EGVFQQMIDKGVR---PN 273

Query: 381 LETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYV-KAKINDP-NLLR 438
           + T   +I  +   G       + +E+         F Y  L+     K K  +   L  
Sbjct: 274 IVTYTCLIHGYLSIGQWKEVVRMLKEMSAHGLEPDCFTYGLLLDYLCKKGKCTEARKLFD 333

Query: 439 RMILGGARPDAETYSLL 455
            MI  G +PD   Y ++
Sbjct: 334 SMIRKGIKPDVSIYGII 350



 Score = 46.2 bits (108), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 57/268 (21%), Positives = 105/268 (39%), Gaps = 41/268 (15%)

Query: 92  YQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPN 151
           + N + +N ++     +G +  +   +  M  +G     + +N LI  +   G+      
Sbjct: 481 HPNVVFFNTIMCNLCTEGRVMKAQRLIDLMERVGTRPDIISYNALIRGHCLVGKTDEASK 540

Query: 152 ILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSY-CILATAH 210
           +L  M +  + P+  T++ L+     D  I+    V+ +M  + + P  V+Y  IL    
Sbjct: 541 LLDIMLSVGLKPNECTYNTLLHGYCRDGRIDDAYSVFQEMLSNGITPVVVTYNTILHGLF 600

Query: 211 AVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSK 270
              R     E Y+  +    +G  WS     IIL G L+K   ++      Q L      
Sbjct: 601 KTRRFSEAKELYLNMIT---SGKQWSIYTYNIILNG-LSKNNCVDEALKMFQSLC----- 651

Query: 271 SYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEM 330
                            +++L +++ +         +N +I    K+G  + A  L   +
Sbjct: 652 -----------------SKDLQVDIIT---------FNIMIGALLKDGRKEDAMNLFATI 685

Query: 331 SMNGCKPNAITYRHLALGCFKSNLVEEG 358
           S NG  P+  TYR +A      NL+EEG
Sbjct: 686 SANGLVPDVTTYRLIA-----ENLIEEG 708



 Score = 44.7 bits (104), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 68/343 (19%), Positives = 131/343 (38%), Gaps = 46/343 (13%)

Query: 118 MKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKV---APHVSTFHILMKI 174
           +++M  LG + + + +N L+       R +    +L  M   +V    P++ +++ ++  
Sbjct: 154 LRRMSELGCTPNVVSYNTLLKGFCDENRAEEALELLHMMADGQVRSCPPNLVSYNTVING 213

Query: 175 EANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNN 234
              +  ++    ++ DM    + PN V+Y I+      A++   AE   + +       N
Sbjct: 214 FFTEGQVDKAYNLFLDMTDQGIPPNVVTYTIVIDGLCKAQVVDRAEGVFQQMIDKGVRPN 273

Query: 235 WSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLE 294
             T   LI  +GYL+ G+     W  V  +    S ++ L  + F               
Sbjct: 274 IVTYTCLI--HGYLSIGQ-----WKEVVRMLKEMS-AHGLEPDCF--------------- 310

Query: 295 MQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNL 354
                       Y  ++   CK G   +A  L   M   G KP+   Y  +  G      
Sbjct: 311 -----------TYGLLLDYLCKKGKCTEARKLFDSMIRKGIKPDVSIYGIILHGYATKGA 359

Query: 355 VEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTK 414
           + E    L+L +           +P       +   FA+K  +G A ++F ++++   + 
Sbjct: 360 LSEMHSFLDLMVG-------NGISPNHYIFNIVFCAFAKKAMIGEAMDIFNKMRQQGLSP 412

Query: 415 YTFVYNTLIKAYVK-AKINDPNL-LRRMILGGARPDAETYSLL 455
               Y TLI A  K  +++D  L   +MI  G  P+   ++ L
Sbjct: 413 NVVNYATLIDALCKLGRVDDAELKFNQMINEGVAPNIVVFTSL 455


>gi|125558286|gb|EAZ03822.1| hypothetical protein OsI_25951 [Oryza sativa Indica Group]
          Length = 1011

 Score = 75.5 bits (184), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 77/334 (23%), Positives = 138/334 (41%), Gaps = 14/334 (4%)

Query: 98  YNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMK 157
           YN ++      G +K +++    M   G +     FN LI +  S G  K    +   M 
Sbjct: 264 YNTMIDLYGKAGKLKDAMDMFMGMPDYGVAADTCTFNTLINIFGSCGNVKEAEALFASMI 323

Query: 158 ADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYT 217
                P V TF+++M + A+  ++EG++K Y  + +  +  + VSY I+       ++  
Sbjct: 324 VRGTNPDVKTFNVMMTLFASKGDVEGVLKHYYHIGKMGLSADTVSYGIVLRVLCERKMVH 383

Query: 218 VAETYVEALEKSMTGNNWSTLDVLIILY---GYLAKGKDLERIWATVQELPNVRSKSYVL 274
            AE  +  + +S T      L V++ +Y   G L K            E   V SK++  
Sbjct: 384 EAEDVIVGIMRSGTCVPEQPLPVVMKMYIDQGLLDKANAFFDRHCRGDE---VSSKTFAA 440

Query: 275 AIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNG 334
            ++AF        AE ++   + V++ +   +YN ++  Y      D+ S LL+ M+ +G
Sbjct: 441 IMDAFAERGFWEEAEHVFYSHRGVRR-RGIVEYNVMVKAYGAAKRYDRVSPLLEHMNESG 499

Query: 335 CKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEK 394
             P+  T+  L +  F +    +  K      KL+   K     P  ET  + I   +  
Sbjct: 500 ISPDECTFNSL-IQMFATGGYPQRAK------KLLGKMKYAGFKPKCETYAAAITTLSRN 552

Query: 395 GDVGNAENLFEELKKANYTKYTFVYNTLIKAYVK 428
             V  A  L+ E+K +       VY  LI  + +
Sbjct: 553 YLVSEAIYLYNEMKASGVEPNVVVYGVLIDTFAE 586



 Score = 52.8 bits (125), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 50/236 (21%), Positives = 108/236 (45%), Gaps = 7/236 (2%)

Query: 118 MKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEAN 177
           ++ M   G S     FN LI + ++ G  +    +L +MK     P   T+   +   + 
Sbjct: 492 LEHMNESGISPDECTFNSLIQMFATGGYPQRAKKLLGKMKYAGFKPKCETYAAAITTLSR 551

Query: 178 DHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWST 237
           ++ +   + +Y++MK S VEPN V Y +L    A       A  Y   +E+S    N   
Sbjct: 552 NYLVSEAIYLYNEMKASGVEPNVVVYGVLIDTFAETGQLEEALHYNNLMEESGIAPNQIV 611

Query: 238 LDVLIILYGYLAKGKDLERIWATVQEL---PNVRSKSYVLAIEAFGRIAQVSRAEELWLE 294
           L  LI  Y      K+ + +++ ++ +   P++ + + +L +  +  +  V++ +E++  
Sbjct: 612 LTSLIKAYSKANCWKEAQDLYSRMKNMDGGPDIVASNSMLNL--YANLGMVTKVKEIFDC 669

Query: 295 MQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCF 350
           ++   Q      Y S+IS+Y   G ++++  +  ++  +G   +  +Y  + + CF
Sbjct: 670 LRRNNQADDV-SYTSMISLYKNMGLLNESVRVAHDLQNSGLLSDCASYNAV-MACF 723



 Score = 49.7 bits (117), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 61/300 (20%), Positives = 120/300 (40%), Gaps = 11/300 (3%)

Query: 155 QMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVAR 214
           +MKA  V P+V  + +L+   A    +E  +   + M+ S + PN++    L  A++ A 
Sbjct: 564 EMKASGVEPNVVVYGVLIDTFAETGQLEEALHYNNLMEESGIAPNQIVLTSLIKAYSKAN 623

Query: 215 LYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSKSYVL 274
            +  A+     ++    G +    + ++ LY  L     ++ I+  ++        SY  
Sbjct: 624 CWKEAQDLYSRMKNMDGGPDIVASNSMLNLYANLGMVTKVKEIFDCLRRNNQADDVSYTS 683

Query: 275 AIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNG 334
            I  +  +  ++ +  +  ++Q+   L     YN+V++ +   G + + + L+++M    
Sbjct: 684 MISLYKNMGLLNESVRVAHDLQNSGLLSDCASYNAVMACFVAKGKLRECAELVQQMQEGN 743

Query: 335 CKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEK 394
             P+A T+  +     K  +  E    L+           RSS+    +   I  +F   
Sbjct: 744 ILPDASTFGMIFSIMKKIQIAPEEVSQLQSAY-----NDNRSSS----SQAVIAFLFLIA 794

Query: 395 GDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKINDP--NLLRRMILGGARPDAETY 452
           G    A N+ E+  K   T      N   K Y      D   +L  +M   G +PD  TY
Sbjct: 795 GMHAAALNICEKYMKPVLTIDQCACNVAFKVYASCGEVDKAFSLFMQMHELGLKPDTATY 854



 Score = 38.1 bits (87), Expect = 8.4,   Method: Compositional matrix adjust.
 Identities = 58/288 (20%), Positives = 119/288 (41%), Gaps = 39/288 (13%)

Query: 94  NELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNIL 153
           N ++Y  L+    + G ++ +L Y   M   G + + +V   LI   S     K   ++ 
Sbjct: 573 NVVVYGVLIDTFAETGQLEEALHYNNLMEESGIAPNQIVLTSLIKAYSKANCWKEAQDLY 632

Query: 154 RQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVA 213
            +MK     P +   + ++ + AN   +  + +++  ++R+  + ++VSY  + + +   
Sbjct: 633 SRMKNMDGGPDIVASNSMLNLYANLGMVTKVKEIFDCLRRNN-QADDVSYTSMISLYKNM 691

Query: 214 RLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGK--DLERIWATVQE---LPNVR 268
            L   +      L+ S   ++ ++ +   ++  ++AKGK  +   +   +QE   LP+  
Sbjct: 692 GLLNESVRVAHDLQNSGLLSDCASYNA--VMACFVAKGKLRECAELVQQMQEGNILPDAS 749

Query: 269 SKSYVLAIEAFGRIA--QVSRAEELWLEMQS-----------------VKQLKATEQY-- 307
           +   + +I    +IA  +VS+ +  + + +S                    L   E+Y  
Sbjct: 750 TFGMIFSIMKKIQIAPEEVSQLQSAYNDNRSSSSQAVIAFLFLIAGMHAAALNICEKYMK 809

Query: 308 ----------NSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHL 345
                     N    VY   G +DKA  L  +M   G KP+  TY HL
Sbjct: 810 PVLTIDQCACNVAFKVYASCGEVDKAFSLFMQMHELGLKPDTATYIHL 857


>gi|15231338|ref|NP_187348.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75186627|sp|Q9M907.1|PP217_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g06920
 gi|6728999|gb|AAF26996.1|AC016827_7 hypothetical protein [Arabidopsis thaliana]
 gi|332640955|gb|AEE74476.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 871

 Score = 75.5 bits (184), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 89/397 (22%), Positives = 166/397 (41%), Gaps = 51/397 (12%)

Query: 100 NLVIACLDK-GVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKA 158
           N ++ CL K G +  +L+  ++M+    + +   +N LI +    G+  T   +   M+ 
Sbjct: 347 NCILTCLRKMGKVDEALKVFEEMKK-DAAPNLSTYNILIDMLCRAGKLDTAFELRDSMQK 405

Query: 159 DKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHA-VARLYT 217
             + P+V T +I++        ++    ++ +M      P+E+++C L      V R+  
Sbjct: 406 AGLFPNVRTVNIMVDRLCKSQKLDEACAMFEEMDYKVCTPDEITFCSLIDGLGKVGRVDD 465

Query: 218 VAETYVEALE------------------------------KSMTGNNWS-TLDVLIILYG 246
             + Y + L+                              K M   N S  L +L     
Sbjct: 466 AYKVYEKMLDSDCRTNSIVYTSLIKNFFNHGRKEDGHKIYKDMINQNCSPDLQLLNTYMD 525

Query: 247 YLAKGKDLERIWATVQELPNVR----SKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLK 302
            + K  + E+  A  +E+   R    ++SY + I    +    +   EL+  M+    + 
Sbjct: 526 CMFKAGEPEKGRAMFEEIKARRFVPDARSYSILIHGLIKAGFANETYELFYSMKEQGCVL 585

Query: 303 ATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKAL 362
            T  YN VI  +CK G ++KA  LL+EM   G +P  +TY  +  G  K + ++E +   
Sbjct: 586 DTRAYNIVIDGFCKCGKVNKAYQLLEEMKTKGFEPTVVTYGSVIDGLAKIDRLDEAYMLF 645

Query: 363 ELGMKLITTKKVRSSTPWLETTL--SIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYN 420
           E         + +S    L   +  S+I+ F + G +  A  + EEL +   T   + +N
Sbjct: 646 E---------EAKSKRIELNVVIYSSLIDGFGKVGRIDEAYLILEELMQKGLTPNLYTWN 696

Query: 421 TLIKAYVKA-KINDPNL-LRRMILGGARPDAETYSLL 455
           +L+ A VKA +IN+  +  + M      P+  TY +L
Sbjct: 697 SLLDALVKAEEINEALVCFQSMKELKCTPNQVTYGIL 733



 Score = 62.8 bits (151), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 74/342 (21%), Positives = 146/342 (42%), Gaps = 17/342 (4%)

Query: 113 LSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILM 172
           + L   ++M+ LG+  +  +F  LI   +  GR  +  ++L +MK+  +   +  +++ +
Sbjct: 186 MMLTLFQQMQELGYEPTVHLFTTLIRGFAKEGRVDSALSLLDEMKSSSLDADIVLYNVCI 245

Query: 173 KIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTG 232
                   ++   K + +++ + ++P+EV+Y  +      A     A    E LEK+   
Sbjct: 246 DSFGKVGKVDMAWKFFHEIEANGLKPDEVTYTSMIGVLCKANRLDEAVEMFEHLEKNRRV 305

Query: 233 NNWSTLDVLIILYGYLAKGKD----LERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRA 288
                 + +I+ YG   K  +    LER  A    +P+V + + +L      ++ +V  A
Sbjct: 306 PCTYAYNTMIMGYGSAGKFDEAYSLLERQRAK-GSIPSVIAYNCILT--CLRKMGKVDEA 362

Query: 289 EELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALG 348
            +++ EM+          YN +I + C+ G +D A  L   M   G  PN  T   +   
Sbjct: 363 LKVFEEMKK-DAAPNLSTYNILIDMLCRAGKLDTAFELRDSMQKAGLFPNVRTVNIMVDR 421

Query: 349 CFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELK 408
             KS  ++E     E           +  TP   T  S+I+   + G V +A  ++E++ 
Sbjct: 422 LCKSQKLDEACAMFE-------EMDYKVCTPDEITFCSLIDGLGKVGRVDDAYKVYEKML 474

Query: 409 KANYTKYTFVYNTLIKAYVKA--KINDPNLLRRMILGGARPD 448
            ++    + VY +LIK +     K +   + + MI     PD
Sbjct: 475 DSDCRTNSIVYTSLIKNFFNHGRKEDGHKIYKDMINQNCSPD 516



 Score = 54.7 bits (130), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 86/442 (19%), Positives = 162/442 (36%), Gaps = 76/442 (17%)

Query: 33  INRLRKLQLNKRALEVMEWVIR--ERPYRPKELDYSYLLEFTIKN-HGISQ--------- 80
           I  LR+L+   RA+E   W  R  E P+ P+  +   L+    +N   + Q         
Sbjct: 69  IGVLRRLKDVNRAIEYFRWYERRTELPHCPESYNSLLLVMARCRNFDALDQILGEMSVAG 128

Query: 81  -GEKLFCCIPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIIL 139
            G  +  CI            +V+ C+    ++   + ++ MR      ++  +  LI  
Sbjct: 129 FGPSVNTCI-----------EMVLGCVKANKLREGYDVVQMMRKFKFRPAFSAYTTLIGA 177

Query: 140 NSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPN 199
            S+      +  + +QM+     P V  F  L++  A +  ++  + +  +MK S ++ +
Sbjct: 178 FSAVNHSDMMLTLFQQMQELGYEPTVHLFTTLIRGFAKEGRVDSALSLLDEMKSSSLDAD 237

Query: 200 EVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWA 259
            V Y                                   +V I  +G + K   ++  W 
Sbjct: 238 IVLY-----------------------------------NVCIDSFGKVGK---VDMAWK 259

Query: 260 TVQELPNVRSK----SYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYC 315
              E+     K    +Y   I    +  ++  A E++  ++  +++  T  YN++I  Y 
Sbjct: 260 FFHEIEANGLKPDEVTYTSMIGVLCKANRLDEAVEMFEHLEKNRRVPCTYAYNTMIMGYG 319

Query: 316 KNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVR 375
             G  D+A  LL+     G  P+ I Y  +     K   V+E  K  E  MK       +
Sbjct: 320 SAGKFDEAYSLLERQRAKGSIPSVIAYNCILTCLRKMGKVDEALKVFE-EMK-------K 371

Query: 376 SSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKINDP- 434
            + P L T   +I++    G +  A  L + ++KA         N ++    K++  D  
Sbjct: 372 DAAPNLSTYNILIDMLCRAGKLDTAFELRDSMQKAGLFPNVRTVNIMVDRLCKSQKLDEA 431

Query: 435 -NLLRRMILGGARPDAETYSLL 455
             +   M      PD  T+  L
Sbjct: 432 CAMFEEMDYKVCTPDEITFCSL 453



 Score = 49.7 bits (117), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 76/374 (20%), Positives = 145/374 (38%), Gaps = 45/374 (12%)

Query: 87  CIPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRR 146
           C P    +E+ + +L+      G +  + +  +KM       + +V+  LI    + GR+
Sbjct: 443 CTP----DEITFCSLIDGLGKVGRVDDAYKVYEKMLDSDCRTNSIVYTSLIKNFFNHGRK 498

Query: 147 KTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCIL 206
           +    I + M     +P +   +  M         E    ++ ++K     P+  SY IL
Sbjct: 499 EDGHKIYKDMINQNCSPDLQLLNTYMDCMFKAGEPEKGRAMFEEIKARRFVPDARSYSIL 558

Query: 207 ATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPN 266
              H + +     ETY         G    T    I++ G+   GK    +    Q L  
Sbjct: 559 I--HGLIKAGFANETYELFYSMKEQGCVLDTRAYNIVIDGFCKCGK----VNKAYQLLEE 612

Query: 267 VRSKSYVLAIEAFGRI----AQVSRAEELWLEMQSVKQLKATEQ---YNSVISVYCKNGF 319
           +++K +   +  +G +    A++ R +E ++  +  K  +       Y+S+I  + K G 
Sbjct: 613 MKTKGFEPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKRIELNVVIYSSLIDGFGKVGR 672

Query: 320 IDKASGLLKEMSMNGCKPNAITYRHL------------ALGCFKS--------NLVEEGF 359
           ID+A  +L+E+   G  PN  T+  L            AL CF+S        N V  G 
Sbjct: 673 IDEAYLILEELMQKGLTPNLYTWNSLLDALVKAEEINEALVCFQSMKELKCTPNQVTYGI 732

Query: 360 ------KALELGMKLITTKKVRSS--TPWLETTLSIIEIFAEKGDVGNAENLFEELKKAN 411
                 K  +     +  ++++     P   +  ++I   A+ G++  A  LF+  K   
Sbjct: 733 LINGLCKVRKFNKAFVFWQEMQKQGMKPSTISYTTMISGLAKAGNIAEAGALFDRFKANG 792

Query: 412 YTKYTFVYNTLIKA 425
               +  YN +I+ 
Sbjct: 793 GVPDSACYNAMIEG 806



 Score = 39.7 bits (91), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 68/322 (21%), Positives = 116/322 (36%), Gaps = 61/322 (18%)

Query: 98  YNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMK 157
           Y+ L+   +  G    + E    M+  G  +    +N +I      G+      +L +MK
Sbjct: 555 YSILIHGLIKAGFANETYELFYSMKEQGCVLDTRAYNIVIDGFCKCGKVNKAYQLLEEMK 614

Query: 158 ADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYT 217
                P V T+  ++   A    ++    ++ + K   +E N V Y  L       ++  
Sbjct: 615 TKGFEPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKRIELNVVIYSSLI--DGFGKVGR 672

Query: 218 VAETYV---EALEKSMTGN--NW-STLDVLIILYGYLAKGKDLERIWATVQELPNVRSKS 271
           + E Y+   E ++K +T N   W S LD L+                             
Sbjct: 673 IDEAYLILEELMQKGLTPNLYTWNSLLDALV----------------------------- 703

Query: 272 YVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQ---YNSVISVYCKNGFIDKASGLLK 328
                       +     E  +  QS+K+LK T     Y  +I+  CK    +KA    +
Sbjct: 704 ------------KAEEINEALVCFQSMKELKCTPNQVTYGILINGLCKVRKFNKAFVFWQ 751

Query: 329 EMSMNGCKPNAITYRHLALGCFKS-NLVEEGFKALELGMKLITTKKVRSSTPWLETTLSI 387
           EM   G KP+ I+Y  +  G  K+ N+ E G         L    K     P      ++
Sbjct: 752 EMQKQGMKPSTISYTTMISGLAKAGNIAEAG--------ALFDRFKANGGVPDSACYNAM 803

Query: 388 IEIFAEKGDVGNAENLFEELKK 409
           IE  +      +A +LFEE ++
Sbjct: 804 IEGLSNGNRAMDAFSLFEETRR 825


>gi|15242446|ref|NP_198787.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75170916|sp|Q9FIX3.1|PP407_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g39710; AltName: Full=Protein EMBRYO DEFECTIVE 2745
 gi|10177971|dbj|BAB11377.1| unnamed protein product [Arabidopsis thaliana]
 gi|332007083|gb|AED94466.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 747

 Score = 75.5 bits (184), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 77/281 (27%), Positives = 117/281 (41%), Gaps = 18/281 (6%)

Query: 180 NIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLD 239
           NI     V+ +M  S+V PN  +Y IL      A    VA T  + +E      N  T +
Sbjct: 185 NISFAENVFKEMLESQVSPNVFTYNILIRGFCFAGNIDVALTLFDKMETKGCLPNVVTYN 244

Query: 240 VLIILYGYLAKGKD---LERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQ 296
            LI  Y  L K  D   L R  A     PN+   SY + I    R  ++     +  EM 
Sbjct: 245 TLIDGYCKLRKIDDGFKLLRSMALKGLEPNL--ISYNVVINGLCREGRMKEVSFVLTEMN 302

Query: 297 SVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVE 356
                     YN++I  YCK G   +A  +  EM  +G  P+ ITY         ++L+ 
Sbjct: 303 RRGYSLDEVTYNTLIKGYCKEGNFHQALVMHAEMLRHGLTPSVITY---------TSLIH 353

Query: 357 EGFKA--LELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTK 414
              KA  +   M+ +   +VR   P   T  ++++ F++KG +  A  +  E+    ++ 
Sbjct: 354 SMCKAGNMNRAMEFLDQMRVRGLCPNERTYTTLVDGFSQKGYMNEAYRVLREMNDNGFSP 413

Query: 415 YTFVYNTLIKAY-VKAKINDP-NLLRRMILGGARPDAETYS 453
               YN LI  + V  K+ D   +L  M   G  PD  +YS
Sbjct: 414 SVVTYNALINGHCVTGKMEDAIAVLEDMKEKGLSPDVVSYS 454



 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 78/345 (22%), Positives = 135/345 (39%), Gaps = 48/345 (13%)

Query: 96  LLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQ 155
           + Y +L+ +    G +  ++E++ +MRV G   +   +  L+   S  G       +LR+
Sbjct: 346 ITYTSLIHSMCKAGNMNRAMEFLDQMRVRGLCPNERTYTTLVDGFSQKGYMNEAYRVLRE 405

Query: 156 MKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARL 215
           M  +  +P V T++ L+        +E  + V  DMK   + P+ VSY  + +     R 
Sbjct: 406 MNDNGFSPSVVTYNALINGHCVTGKMEDAIAVLEDMKEKGLSPDVVSYSTVLS--GFCRS 463

Query: 216 YTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSKSYVLA 275
           Y V E      E    G    T+                                +Y   
Sbjct: 464 YDVDEALRVKREMVEKGIKPDTI--------------------------------TYSSL 491

Query: 276 IEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGC 335
           I+ F    +   A +L+ EM  V        Y ++I+ YC  G ++KA  L  EM   G 
Sbjct: 492 IQGFCEQRRTKEACDLYEEMLRVGLPPDEFTYTALINAYCMEGDLEKALQLHNEMVEKGV 551

Query: 336 KPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPW-----------LETT 384
            P+ +TY  L  G  K +   E  + L   +KL   + V S   +            ++ 
Sbjct: 552 LPDVVTYSVLINGLNKQSRTREAKRLL---LKLFYEESVPSDVTYHTLIENCSNIEFKSV 608

Query: 385 LSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKA 429
           +S+I+ F  KG +  A+ +FE +   N+      YN +I  + +A
Sbjct: 609 VSLIKGFCMKGMMTEADQVFESMLGKNHKPDGTAYNIMIHGHCRA 653



 Score = 62.0 bits (149), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 73/294 (24%), Positives = 119/294 (40%), Gaps = 33/294 (11%)

Query: 167 TFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEAL 226
           T HIL K            K+Y   K +++   +V+   L   +A     ++ ETY    
Sbjct: 86  TLHILTKF-----------KLY---KTAQILAEDVAAKTLDDEYASLVFKSLQETY---- 127

Query: 227 EKSMTGNNWSTLDVLIILYGYLA---KGKDLERIWATVQELPNVRSKSYVLAIEAFGRIA 283
              +  +  S  D+++  Y  L+   K   +  +      +P V S + VL      +  
Sbjct: 128 --DLCYSTSSVFDLVVKSYSRLSLIDKALSIVHLAQAHGFMPGVLSYNAVLDATIRSK-R 184

Query: 284 QVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYR 343
            +S AE ++ EM   +       YN +I  +C  G ID A  L  +M   GC PN +TY 
Sbjct: 185 NISFAENVFKEMLESQVSPNVFTYNILIRGFCFAGNIDVALTLFDKMETKGCLPNVVTYN 244

Query: 344 HLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENL 403
            L  G  K   +++GF       KL+ +  ++   P L +   +I     +G +     +
Sbjct: 245 TLIDGYCKLRKIDDGF-------KLLRSMALKGLEPNLISYNVVINGLCREGRMKEVSFV 297

Query: 404 FEELKKANYTKYTFVYNTLIKAYVKAKINDPNLLRR--MILGGARPDAETYSLL 455
             E+ +  Y+     YNTLIK Y K       L+    M+  G  P   TY+ L
Sbjct: 298 LTEMNRRGYSLDEVTYNTLIKGYCKEGNFHQALVMHAEMLRHGLTPSVITYTSL 351



 Score = 50.1 bits (118), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 74/347 (21%), Positives = 141/347 (40%), Gaps = 35/347 (10%)

Query: 94  NELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNIL 153
           NE  Y  LV     KG +  +   +++M   G S S + +N LI  +   G+ +    +L
Sbjct: 379 NERTYTTLVDGFSQKGYMNEAYRVLREMNDNGFSPSVVTYNALINGHCVTGKMEDAIAVL 438

Query: 154 RQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVA 213
             MK   ++P V ++  ++      ++++  ++V  +M    ++P+ ++Y  L       
Sbjct: 439 EDMKEKGLSPDVVSYSTVLSGFCRSYDVDEALRVKREMVEKGIKPDTITYSSLIQGFCEQ 498

Query: 214 RLYTVA-ETYVEALEKSMTGNNWSTLDVLIILY---GYLAKGKDLERIWATVQELPNVRS 269
           R    A + Y E L   +  + + T   LI  Y   G L K   L         LP+V  
Sbjct: 499 RRTKEACDLYEEMLRVGLPPDEF-TYTALINAYCMEGDLEKALQLHNEMVEKGVLPDV-- 555

Query: 270 KSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKE 329
            +Y + I    + ++   A+ L L++   + + +   Y+++I   C N        L+K 
Sbjct: 556 VTYSVLINGLNKQSRTREAKRLLLKLFYEESVPSDVTYHTLIE-NCSNIEFKSVVSLIKG 614

Query: 330 MSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIE 389
             M G    A                ++ F+++ LG         ++  P       +I 
Sbjct: 615 FCMKGMMTEA----------------DQVFESM-LG---------KNHKPDGTAYNIMIH 648

Query: 390 IFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVK-AKINDPN 435
                GD+  A  L++E+ K+ +  +T     L+KA  K  K+N+ N
Sbjct: 649 GHCRAGDIRKAYTLYKEMVKSGFLLHTVTVIALVKALHKEGKVNELN 695


>gi|410110125|gb|AFV61142.1| pentatricopeptide repeat-containing protein 123, partial [Lippia
           micromera]
          Length = 434

 Score = 75.5 bits (184), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 72/319 (22%), Positives = 147/319 (46%), Gaps = 16/319 (5%)

Query: 98  YNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMK 157
           Y+ L+     +G+   +L +++KM         ++++ LI L+          +I  ++K
Sbjct: 18  YSTLITHFGKEGLFDAALSWLQKMEQDQVPGDLVLYSNLIELSRKXCDYSKAISIFSRLK 77

Query: 158 ADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYT 217
                P +  ++ ++ +            + S+MK + V PN  SY  L T +   + + 
Sbjct: 78  RSGFTPDLVAYNAMINVFGKAKLFREARSLISEMKTAGVMPNTTSYSTLLTMYXENKKFL 137

Query: 218 VAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQEL---PNVRSKSYVL 274
            A +    + +     + +T +++I +YG L   K+ ++++  ++++   PNV S + +L
Sbjct: 138 EALSVFSEMREIKCXLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTLL 197

Query: 275 AIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNG 334
            +  +G       A  L+  MQ     +    YNS+I +Y K    +KA+ L++EM   G
Sbjct: 198 RV--YGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMIMIYGKTLEHEKANNLIQEMQSRG 255

Query: 335 CKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTL--SIIEIFA 392
            +PN+ITY         S ++    K  +L    +  +K+RSS   ++  L  ++I  + 
Sbjct: 256 IEPNSITY---------STIISIWGKXGKLDRAAMLFQKLRSSGVEIDQILFQTMIVAYE 306

Query: 393 EKGDVGNAENLFEELKKAN 411
             G V +A+ L  ELK+ +
Sbjct: 307 RAGLVAHAKRLLHELKRPD 325



 Score = 46.6 bits (109), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 51/245 (20%), Positives = 98/245 (40%), Gaps = 41/245 (16%)

Query: 187 VYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYG 246
           ++ +M++  + P+  +Y  L T      L+  A ++++ +E+     +       ++LY 
Sbjct: 2   LFDEMRQRALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDQVPGD-------LVLYS 54

Query: 247 YLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQ 306
            L    +L R           +   Y  AI  F R+ +     +L               
Sbjct: 55  NLI---ELSR-----------KXCDYSKAISIFSRLKRSGFTPDLV-------------A 87

Query: 307 YNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGM 366
           YN++I+V+ K     +A  L+ EM   G  PN  +Y  L        +  E  K LE   
Sbjct: 88  YNAMINVFGKAKLFREARSLISEMKTAGVMPNTTSYSTLL------TMYXENKKFLEALS 141

Query: 367 KLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAY 426
                ++++     L T   +I+++ + G    A+ LF  ++K         YNTL++ Y
Sbjct: 142 VFSEMREIKCXLD-LTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVY 200

Query: 427 VKAKI 431
             A++
Sbjct: 201 GDAEL 205



 Score = 41.2 bits (95), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 35/134 (26%), Positives = 55/134 (41%), Gaps = 11/134 (8%)

Query: 325 GLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPW-LET 383
           GL  EM      P+  TY  L     K  L +     L+        K  +   P  L  
Sbjct: 1   GLFDEMRQRALSPDRYTYSTLITHFGKEGLFDAALSWLQ--------KMEQDQVPGDLVL 52

Query: 384 TLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKI--NDPNLLRRMI 441
             ++IE+  +  D   A ++F  LK++ +T     YN +I  + KAK+     +L+  M 
Sbjct: 53  YSNLIELSRKXCDYSKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMK 112

Query: 442 LGGARPDAETYSLL 455
             G  P+  +YS L
Sbjct: 113 TAGVMPNTTSYSTL 126


>gi|115476328|ref|NP_001061760.1| Os08g0402600 [Oryza sativa Japonica Group]
 gi|113623729|dbj|BAF23674.1| Os08g0402600, partial [Oryza sativa Japonica Group]
          Length = 554

 Score = 75.5 bits (184), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 79/373 (21%), Positives = 158/373 (42%), Gaps = 26/373 (6%)

Query: 94  NELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNIL 153
           N + YN ++   +  G ++       +M   G   + + +N L+      GR      +L
Sbjct: 97  NHITYNTMIDGHIKGGDLEAGFRLRDQMVCHGLKPNAITYNVLLSGLCRAGRMGETSALL 156

Query: 154 RQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVA 213
            +M + K+ P   T+ IL    + + + + ++ ++    ++ V   + +  IL       
Sbjct: 157 DEMASQKMVPDGFTYSILFDGLSRNGDSKAMLSLFGKYLKNGVTIGDYTCSILLNGLCKD 216

Query: 214 RLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSK--- 270
              ++AE  +++L  +         + LI   GY   G +LE  ++T  ++ +   K   
Sbjct: 217 GKVSIAEEVLQSLVNAGLVPTRVIYNTLI--NGYCQTG-ELEGAFSTFGQMKSRHIKPDH 273

Query: 271 -SYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKE 329
            +Y   I    +  +++ A++L +EMQ        E +N++I  Y + G ++K   +L E
Sbjct: 274 ITYNALINGLCKAERITNAQDLLMEMQDNGVNPTVETFNTLIDAYGRTGQLEKCFIVLSE 333

Query: 330 MSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIE 389
           M  NG KPN ++Y  +     K+  + E    L+           +   P  +   +II+
Sbjct: 334 MQENGLKPNVVSYGSIVNAFCKNGKIPEAVAILDDMFH-------KDVLPNAQVYNAIID 386

Query: 390 IFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYV-KAKINDPNLL------RRMIL 442
            + E G    A  L E++K    +     YN LIK    +++I++   +       R+I 
Sbjct: 387 AYVEHGPNDQAFILVEKMKSNGISPSIVTYNLLIKGLCNQSQISEAEEIINSLSNHRLI- 445

Query: 443 GGARPDAETYSLL 455
               PDA +Y+ L
Sbjct: 446 ----PDAVSYNTL 454



 Score = 69.3 bits (168), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 75/383 (19%), Positives = 152/383 (39%), Gaps = 59/383 (15%)

Query: 88  IPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRK 147
           +P  +   +L++ L      K ++ L  +Y+K    +G     ++ N L       G+  
Sbjct: 165 VPDGFTYSILFDGLSRNGDSKAMLSLFGKYLKNGVTIGDYTCSILLNGL----CKDGKVS 220

Query: 148 TIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILA 207
               +L+ +    + P    ++ L+        +EG    +  MK   ++P+ ++Y  L 
Sbjct: 221 IAEEVLQSLVNAGLVPTRVIYNTLINGYCQTGELEGAFSTFGQMKSRHIKPDHITYNALI 280

Query: 208 TAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQEL--- 264
                A   T A+  +  ++ +       T + LI  YG   +   LE+ +  + E+   
Sbjct: 281 NGLCKAERITNAQDLLMEMQDNGVNPTVETFNTLIDAYGRTGQ---LEKCFIVLSEMQEN 337

Query: 265 ---PNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFID 321
              PNV   SY   + AF +  ++  A  +  +M     L   + YN++I  Y ++G  D
Sbjct: 338 GLKPNV--VSYGSIVNAFCKNGKIPEAVAILDDMFHKDVLPNAQVYNAIIDAYVEHGPND 395

Query: 322 KASGLLKEMSMNGCKPNAITYRHLALG--------------------------------- 348
           +A  L+++M  NG  P+ +TY  L  G                                 
Sbjct: 396 QAFILVEKMKSNGISPSIVTYNLLIKGLCNQSQISEAEEIINSLSNHRLIPDAVSYNTLI 455

Query: 349 ---CFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFE 405
              C++ N+     KAL+L  ++     ++S+   + T   +I      G +   E L++
Sbjct: 456 SACCYRGNI----DKALDLQQRM-HKYGIKST---VRTYHQLISGLGGAGRLNEMEYLYQ 507

Query: 406 ELKKANYTKYTFVYNTLIKAYVK 428
           ++ + N      ++N +++AY K
Sbjct: 508 KMMQNNVVPSNAIHNIMVEAYSK 530



 Score = 61.6 bits (148), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 84/394 (21%), Positives = 161/394 (40%), Gaps = 40/394 (10%)

Query: 98  YNNLVIACLDKGVIKLSLEYMKKM-RVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQM 156
           +N  V AC+  G +  ++  +++M R      +   +N +I      GR      +  +M
Sbjct: 30  WNKAVQACVAAGDLGEAVGMLRRMGRDGAPPPNAFSYNVVIAGMWRAGRGGDAVEVFDEM 89

Query: 157 KADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVA-RL 215
               V P+  T++ ++       ++E   ++   M    ++PN ++Y +L +    A R+
Sbjct: 90  TERAVLPNHITYNTMIDGHIKGGDLEAGFRLRDQMVCHGLKPNAITYNVLLSGLCRAGRM 149

Query: 216 YTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQE-LPN-VRSKSYV 273
              +    E   + M  + ++      IL+  L++  D + + +   + L N V    Y 
Sbjct: 150 GETSALLDEMASQKMVPDGFT----YSILFDGLSRNGDSKAMLSLFGKYLKNGVTIGDYT 205

Query: 274 LAI--EAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMS 331
            +I      +  +VS AEE+   + +   +     YN++I+ YC+ G ++ A     +M 
Sbjct: 206 CSILLNGLCKDGKVSIAEEVLQSLVNAGLVPTRVIYNTLINGYCQTGELEGAFSTFGQMK 265

Query: 332 MNGCKPNAITYRHLALGCFKS------------------NLVEEGFKAL--------ELG 365
               KP+ ITY  L  G  K+                  N   E F  L        +L 
Sbjct: 266 SRHIKPDHITYNALINGLCKAERITNAQDLLMEMQDNGVNPTVETFNTLIDAYGRTGQLE 325

Query: 366 MKLITTKKVRSST--PWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLI 423
              I   +++ +   P + +  SI+  F + G +  A  + +++   +      VYN +I
Sbjct: 326 KCFIVLSEMQENGLKPNVVSYGSIVNAFCKNGKIPEAVAILDDMFHKDVLPNAQVYNAII 385

Query: 424 KAYVKAKINDPN--LLRRMILGGARPDAETYSLL 455
            AYV+   ND    L+ +M   G  P   TY+LL
Sbjct: 386 DAYVEHGPNDQAFILVEKMKSNGISPSIVTYNLL 419


>gi|414885390|tpg|DAA61404.1| TPA: hypothetical protein ZEAMMB73_280584 [Zea mays]
          Length = 645

 Score = 75.5 bits (184), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 95/411 (23%), Positives = 170/411 (41%), Gaps = 24/411 (5%)

Query: 33  INRLRKLQLNKRALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQGEKLFCCIPKD- 91
           IN  R      +A EV + ++ ++   P  + Y+ ++    +   I   E+LF  + +  
Sbjct: 193 INACRFQGTVAKAQEVWDQMVAQQ-IDPNVVTYTTMICALCEEGCIGDAERLFDAMKEAG 251

Query: 92  -YQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIP 150
              N+  YN L+     +  +  ++   +++   G + + ++F  LI       R     
Sbjct: 252 MQPNQYTYNVLMSGHCQRDDVNSAVVLYQELLKSGLNPNAVIFTTLIDGFCKAKRFSEAK 311

Query: 151 NILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAH 210
            +  +M    VAP V  ++ LM       N +  + +Y +M R  + P+E +  I+    
Sbjct: 312 GMFLEMPRFGVAPTVPVYNSLMDGAFRSGNAQEALALYQEMTRLGLCPDEFTCSIVVRGL 371

Query: 211 AVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQEL------ 264
                  VA+ +++ +++     N +  + LI  Y  +    +LE   AT   +      
Sbjct: 372 CDGGQMHVADRFLQGVQEDGVNLNAAAYNALIDEYCRIG---NLEEALATCTRMTEVGIE 428

Query: 265 PNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKAS 324
           PNV S S +  I+   +  ++  A  ++ EM +         Y ++I  + KNG ID A 
Sbjct: 429 PNVVSYSSL--IDGHSKRGKMQIAMAIYTEMVAKGIEPNVVTYTALIHGHAKNGGIDAAF 486

Query: 325 GLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFK-ALEL-GMKLITTKKVRSSTPWLE 382
            L KEM  NG  PNAIT   L  G  + N V+E  +  +E  G+K      V S+    E
Sbjct: 487 RLHKEMIENGISPNAITVSVLVDGLCRENRVQEAVRFVMEYSGLKCSDIHSVFSNFTIEE 546

Query: 383 TTL--------SIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKA 425
             L        ++I      G    A  LF  ++K+     +F Y  LI+ 
Sbjct: 547 ECLIPNSVIYMTLIYGLYLDGQHCEAGKLFSYMRKSGMIPDSFTYTLLIRG 597



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 78/370 (21%), Positives = 141/370 (38%), Gaps = 49/370 (13%)

Query: 132 VFNRLIILNSSPGRRKTIPNILR------------QMKADKVAPHVSTFHILMKIEANDH 179
           VF RL  L + P     +  +++            +M    + P V T++ L+       
Sbjct: 141 VFRRLRTLPALPACNAVLDGLVKARRPGCAWELFDEMLRRGLVPSVVTYNTLINACRFQG 200

Query: 180 NIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLD 239
            +    +V+  M   +++PN V+Y  +  A         AE   +A++++    N  T +
Sbjct: 201 TVAKAQEVWDQMVAQQIDPNVVTYTTMICALCEEGCIGDAERLFDAMKEAGMQPNQYTYN 260

Query: 240 VLIILYGYLAKGKDLERIWATVQEL----PNVRSKSYVLAIEAFGRIAQVSRAEELWLEM 295
           VL  + G+  +  D+       QEL     N  +  +   I+ F +  + S A+ ++LEM
Sbjct: 261 VL--MSGHCQR-DDVNSAVVLYQELLKSGLNPNAVIFTTLIDGFCKAKRFSEAKGMFLEM 317

Query: 296 QSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPN----AITYRHLALGC-- 349
                      YNS++    ++G   +A  L +EM+  G  P+    +I  R L  G   
Sbjct: 318 PRFGVAPTVPVYNSLMDGAFRSGNAQEALALYQEMTRLGLCPDEFTCSIVVRGLCDGGQM 377

Query: 350 -----FKSNLVEEGFKA-----------------LELGMKLITTKKVRSSTPWLETTLSI 387
                F   + E+G                    LE  +   T        P + +  S+
Sbjct: 378 HVADRFLQGVQEDGVNLNAAAYNALIDEYCRIGNLEEALATCTRMTEVGIEPNVVSYSSL 437

Query: 388 IEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKINDP--NLLRRMILGGA 445
           I+  +++G +  A  ++ E+           Y  LI  + K    D    L + MI  G 
Sbjct: 438 IDGHSKRGKMQIAMAIYTEMVAKGIEPNVVTYTALIHGHAKNGGIDAAFRLHKEMIENGI 497

Query: 446 RPDAETYSLL 455
            P+A T S+L
Sbjct: 498 SPNAITVSVL 507



 Score = 45.1 bits (105), Expect = 0.077,   Method: Compositional matrix adjust.
 Identities = 45/193 (23%), Positives = 82/193 (42%), Gaps = 9/193 (4%)

Query: 238 LDVLIILYGYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQS 297
           L VL+I    +    +   ++  ++ LP + + + VL  +   +  +   A EL+ EM  
Sbjct: 122 LGVLVIALSQMGLLDEALYVFRRLRTLPALPACNAVL--DGLVKARRPGCAWELFDEMLR 179

Query: 298 VKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEE 357
              + +   YN++I+     G + KA  +  +M      PN +TY  +        L EE
Sbjct: 180 RGLVPSVVTYNTLINACRFQGTVAKAQEVWDQMVAQQIDPNVVTYTTMICA-----LCEE 234

Query: 358 GFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTF 417
           G   +    +L    K     P   T   ++    ++ DV +A  L++EL K+       
Sbjct: 235 G--CIGDAERLFDAMKEAGMQPNQYTYNVLMSGHCQRDDVNSAVVLYQELLKSGLNPNAV 292

Query: 418 VYNTLIKAYVKAK 430
           ++ TLI  + KAK
Sbjct: 293 IFTTLIDGFCKAK 305



 Score = 40.4 bits (93), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 54/250 (21%), Positives = 103/250 (41%), Gaps = 27/250 (10%)

Query: 94  NELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNIL 153
           N   YN L+      G ++ +L    +M  +G   + + ++ LI  +S  G+ +    I 
Sbjct: 395 NAAAYNALIDEYCRIGNLEEALATCTRMTEVGIEPNVVSYSSLIDGHSKRGKMQIAMAIY 454

Query: 154 RQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVA 213
            +M A  + P+V T+  L+   A +  I+   +++ +M  + + PN ++  +L     + 
Sbjct: 455 TEMVAKGIEPNVVTYTALIHGHAKNGGIDAAFRLHKEMIENGISPNAITVSVLV--DGLC 512

Query: 214 RLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWA--TVQE---LPNVR 268
           R   V E     +E       +S L           K  D+  +++  T++E   +PN  
Sbjct: 513 RENRVQEAVRFVME-------YSGL-----------KCSDIHSVFSNFTIEEECLIPN-- 552

Query: 269 SKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLK 328
           S  Y+  I       Q   A +L+  M+    +  +  Y  +I   C  G++  A  L  
Sbjct: 553 SVIYMTLIYGLYLDGQHCEAGKLFSYMRKSGMIPDSFTYTLLIRGQCMLGYVLNAMMLYA 612

Query: 329 EMSMNGCKPN 338
           +M   G KP 
Sbjct: 613 DMMKIGVKPT 622


>gi|302757207|ref|XP_002962027.1| hypothetical protein SELMODRAFT_77588 [Selaginella moellendorffii]
 gi|300170686|gb|EFJ37287.1| hypothetical protein SELMODRAFT_77588 [Selaginella moellendorffii]
          Length = 814

 Score = 75.5 bits (184), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 97/460 (21%), Positives = 181/460 (39%), Gaps = 35/460 (7%)

Query: 14  FQSWMREGF-PVHRGEIFHSINRLRKLQLNKRALEVMEWVIRERPYRPKELDYSYLLEFT 72
           F   M  GF P  R      +  L K +  K A EV    + +  + P  + Y+ +++  
Sbjct: 212 FHEMMAMGFVPPDRALHTAMVRTLLKAKRVKEAREVFGQ-MEKCGFPPDAIAYNTMIDGL 270

Query: 73  IKNHGISQGEKLF------CCIPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGH 126
            K     +  K+        C+P +    +L N+L  A    G ++ + E  + M   G 
Sbjct: 271 AKAGHAQEALKVLDNMLAKACVPTEVTYGILVNSLCKA----GTLERAEELFRVMAASGF 326

Query: 127 SISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMK 186
             + +++  LI   +  GR K   ++  +M      P V T  +++       N E   K
Sbjct: 327 RPNSVIYTSLIHGFAKSGRMKEACSLFDEMVEAGYRPDVITHTVMIDGLCKSGNFEQAAK 386

Query: 187 VYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNW--STLDVLIIL 244
            + +M R   +PN V+Y  +     ++++  VA  +   + K M  +     ++  + +L
Sbjct: 387 SFEEMMRGGCKPNVVTYTTII--QGLSKIGRVANAF--RIMKGMIAHGCFPDSVTYICLL 442

Query: 245 YGYLAKGKDLERIWATVQELPNVRSKS----YVLAIEAFGRIAQVSRA-EELWLEMQSVK 299
            G+   G+ L+     + EL    S      Y   ++       V    ++L+ + ++  
Sbjct: 443 DGFCKLGR-LDEAAQLLDELDKCSSSPNLQLYSSLVKGLCDGGSVENTLDDLFEQSKAAA 501

Query: 300 QLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKS--NLVEE 357
           +        S+I   CK G +D+A  + + M   GCKP+A TY  L  G  +S  N VE 
Sbjct: 502 ENLDPGLCCSIIVGLCKTGRLDEACRIFQRMVSEGCKPDATTYNILINGLCRSRENRVER 561

Query: 358 GFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTF 417
            F  L     L     +  +  +    + + +I    G+V  A  + EE     +     
Sbjct: 562 AFALLH---DLEMVGYLPDAVTYTPLCIGLCKI----GEVDRAVKMLEEASSRGWNADVV 614

Query: 418 VYNTLIKAYV-KAKINDP-NLLRRMILGGARPDAETYSLL 455
            Y  L      + +++   +L + M+  G  PDA  Y  +
Sbjct: 615 AYTALCTGLCYQGQVDRAVSLFQEMVRQGGAPDAAAYCCI 654



 Score = 72.8 bits (177), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 104/477 (21%), Positives = 184/477 (38%), Gaps = 52/477 (10%)

Query: 23  PVHRGEIF--HSINRLRKLQLNKRALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQ 80
           PVH G++   H    LR L++   A+    W   +  ++     Y+ L+   +     SQ
Sbjct: 79  PVH-GQVLGSHVAAVLRSLKVTGTAISFFRWAGEQAGFQHDVFTYNCLMNLLVAEKNYSQ 137

Query: 81  G-----EKLFCCI-PKDYQNELLYNNLV-IACLDKGVIKLSLEYMKKMRVLGHSISYLVF 133
                 E L   I P  +   +L  +       D  V     E MK+ R      ++L+ 
Sbjct: 138 CYAIHEEMLKAGIAPNTFSFNILIRSFARTRRADDAVT--CFEIMKRKRCKPDLHTFLI- 194

Query: 134 NRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILM-KIEANDHNIEGLMKVYSDMK 192
             L+      G  +    +  +M A    P     H  M +       ++   +V+  M+
Sbjct: 195 --LVDCLCKAGMDEKAFEVFHEMMAMGFVPPDRALHTAMVRTLLKAKRVKEAREVFGQME 252

Query: 193 RSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLI---ILYGYLA 249
           +    P+ ++Y  +    A A     A   ++ +          T  +L+      G L 
Sbjct: 253 KCGFPPDAIAYNTMIDGLAKAGHAQEALKVLDNMLAKACVPTEVTYGILVNSLCKAGTLE 312

Query: 250 KGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNS 309
           + ++L R+ A     PN  S  Y   I  F +  ++  A  L+ EM           +  
Sbjct: 313 RAEELFRVMAASGFRPN--SVIYTSLIHGFAKSGRMKEACSLFDEMVEAGYRPDVITHTV 370

Query: 310 VISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRH---------------------LALG 348
           +I   CK+G  ++A+   +EM   GCKPN +TY                       +A G
Sbjct: 371 MIDGLCKSGNFEQAAKSFEEMMRGGCKPNVVTYTTIIQGLSKIGRVANAFRIMKGMIAHG 430

Query: 349 CFKSNL----VEEGF---KALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNA- 400
           CF  ++    + +GF     L+   +L+      SS+P L+   S+++   + G V N  
Sbjct: 431 CFPDSVTYICLLDGFCKLGRLDEAAQLLDELDKCSSSPNLQLYSSLVKGLCDGGSVENTL 490

Query: 401 ENLFEELKKANYTKYTFVYNTLIKAYVKAKINDP--NLLRRMILGGARPDAETYSLL 455
           ++LFE+ K A       +  ++I    K    D    + +RM+  G +PDA TY++L
Sbjct: 491 DDLFEQSKAAAENLDPGLCCSIIVGLCKTGRLDEACRIFQRMVSEGCKPDATTYNIL 547



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 86/418 (20%), Positives = 161/418 (38%), Gaps = 32/418 (7%)

Query: 55  ERPYRPKELDYSYLLEFTIKNHGISQGEKLF------CCIPKDYQNELLYNNLVIACLDK 108
           E  YRP  + ++ +++   K+    Q  K F       C P    N + Y  ++      
Sbjct: 358 EAGYRPDVITHTVMIDGLCKSGNFEQAAKSFEEMMRGGCKP----NVVTYTTIIQGLSKI 413

Query: 109 GVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTF 168
           G +  +   MK M   G     + +  L+      GR      +L ++     +P++  +
Sbjct: 414 GRVANAFRIMKGMIAHGCFPDSVTYICLLDGFCKLGRLDEAAQLLDELDKCSSSPNLQLY 473

Query: 169 HILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYC--ILATAHAVARLYTVAETYVEAL 226
             L+K   +  ++E  +    +  ++  E  +   C  I+       RL      +   +
Sbjct: 474 SSLVKGLCDGGSVENTLDDLFEQSKAAAENLDPGLCCSIIVGLCKTGRLDEACRIFQRMV 533

Query: 227 EKSMTGNNWSTLDVLIILYGYLAKGKD--LERIWATVQELPNV----RSKSYVLAIEAFG 280
            +     + +T ++LI     L + ++  +ER +A + +L  V     + +Y        
Sbjct: 534 SEGCK-PDATTYNILI---NGLCRSRENRVERAFALLHDLEMVGYLPDAVTYTPLCIGLC 589

Query: 281 RIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAI 340
           +I +V RA ++  E  S         Y ++ +  C  G +D+A  L +EM   G  P+A 
Sbjct: 590 KIGEVDRAVKMLEEASSRGWNADVVAYTALCTGLCYQGQVDRAVSLFQEMVRQGGAPDAA 649

Query: 341 TYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNA 400
            Y      C  + L++   K LE   K       +   P + T  ++++     G+V  A
Sbjct: 650 AY-----CCIINGLIKG--KKLEDACKFFDEMIGKGQKPTVATYTALVQALCHAGNVDEA 702

Query: 401 ENLFEE-LKKANYTKYTFVYNTLIKAYVKAKINDP--NLLRRMILGGARPDAETYSLL 455
            + FE  L +        +Y+ LI  + KA   D    L   MI  G  P A T + L
Sbjct: 703 FHRFEGMLARGELVGSVMIYDALIHGFCKALKVDAALKLFEDMISRGNVPTAVTSASL 760


>gi|32488707|emb|CAE03450.1| OSJNBa0088H09.8 [Oryza sativa Japonica Group]
          Length = 905

 Score = 75.5 bits (184), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 77/348 (22%), Positives = 149/348 (42%), Gaps = 24/348 (6%)

Query: 94  NELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLII----LNSS--PGRRK 147
           N  ++ +LV A      ++ +L  +++M+  G  ++ + ++ LI     +N S   G  +
Sbjct: 331 NAFVFTSLVHAYAVARDMRGALSCVEEMKSEGLELTIVTYSILISGFAKINDSHQSGNME 390

Query: 148 TIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILA 207
               ++R+M+ D +   +  +H +M       N    + V+  +K    +P+ +SY  L 
Sbjct: 391 RAEELVREMEEDGIDAPIDVYHSMMHGYTIIQNENKCLVVFERLKECGFKPSIISYGCLL 450

Query: 208 TAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNV 267
             +        A +  + +E     +N  T  +LI  + +L    D    +A  +E+  +
Sbjct: 451 NLYVKIGKVAKALSISKEMESCGIKHNNKTYSMLINGFIHL---HDFANAFAIFEEM--L 505

Query: 268 RS------KSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFID 321
           RS        Y L IEAF ++  + RA  +  +MQ  +   +   +  +I  Y   G + 
Sbjct: 506 RSGLQPDRAIYNLLIEAFCKMGNMDRAICILEKMQKERMQPSNRAFRPIIEGYAVAGDMK 565

Query: 322 KASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWL 381
            A   L  M  +GC P  +TY  L  G  + + V+     L+          +   TP  
Sbjct: 566 SALDTLDLMRRSGCVPTVMTYNALIHGLVRKHKVQRAVSVLD-------KMSIAGITPNE 618

Query: 382 ETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKA 429
            T   I+  +A  GD+G A   F ++K++      ++Y TL++A  K+
Sbjct: 619 HTYTIIMRGYAASGDIGKAFEYFTKIKESGLKLDVYIYETLLRACCKS 666



 Score = 68.9 bits (167), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 74/298 (24%), Positives = 125/298 (41%), Gaps = 12/298 (4%)

Query: 94  NELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNIL 153
           +  +YN L+ A    G +  ++  ++KM+      S   F  +I   +  G  K+  + L
Sbjct: 512 DRAIYNLLIEAFCKMGNMDRAICILEKMQKERMQPSNRAFRPIIEGYAVAGDMKSALDTL 571

Query: 154 RQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVA 213
             M+     P V T++ L+      H ++  + V   M  + + PNE +Y I+   +A +
Sbjct: 572 DLMRRSGCVPTVMTYNALIHGLVRKHKVQRAVSVLDKMSIAGITPNEHTYTIIMRGYAAS 631

Query: 214 RLYTVAETYVEALEKSMTGNNWSTLDVLI--ILYGYLAKGKDLERIWATVQELPNVRSKS 271
                A  Y   +++S        LDV I   L     K   ++   A  +E+   +   
Sbjct: 632 GDIGKAFEYFTKIKESGL-----KLDVYIYETLLRACCKSGRMQSALAVTREMSFQKIPR 686

Query: 272 ----YVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLL 327
               Y + I+ + R   V  AE+L  +M+          Y S I+  CK G + +A  ++
Sbjct: 687 NTFIYNILIDGWARRGDVWEAEDLMKQMKEDGVPPNIHTYTSYINACCKAGDMQRAEKVI 746

Query: 328 KEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTL 385
           +EM   G KPN  TY  L  G  + +L +   K  E  MKL   K   +S   L T+L
Sbjct: 747 EEMVDVGLKPNVKTYTTLIKGWARVSLPDRALKCFE-EMKLAGLKPDEASYHCLVTSL 803



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 95/437 (21%), Positives = 171/437 (39%), Gaps = 55/437 (12%)

Query: 28  EIFHSINRLRKLQLNKRALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQGEKLFCC 87
           +++HS+     +  N+    V+   ++E  ++P  + Y  LL   +K   +++       
Sbjct: 409 DVYHSMMHGYTIIQNENKCLVVFERLKECGFKPSIISYGCLLNLYVKIGKVAKA----LS 464

Query: 88  IPKDYQN-ELLYNNLVIACLDKGVIKL-----SLEYMKKMRVLGHSISYLVFNRLIILNS 141
           I K+ ++  + +NN   + L  G I L     +    ++M   G      ++N LI    
Sbjct: 465 ISKEMESCGIKHNNKTYSMLINGFIHLHDFANAFAIFEEMLRSGLQPDRAIYNLLIEAFC 524

Query: 142 SPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEV 201
             G       IL +M+ +++ P    F  +++  A   +++  +     M+RS   P  +
Sbjct: 525 KMGNMDRAICILEKMQKERMQPSNRAFRPIIEGYAVAGDMKSALDTLDLMRRSGCVPTVM 584

Query: 202 SYCILATAHAVARLYTVAETYVEALEK-SMTGNNWSTLDVLIILYGYLAKGKDLERIWAT 260
           +Y  L   H + R + V +  V  L+K S+ G   +     II+ GY A G D+ +    
Sbjct: 585 TYNALI--HGLVRKHKV-QRAVSVLDKMSIAGITPNEHTYTIIMRGYAASG-DIGK---- 636

Query: 261 VQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFI 320
                         A E F +I +     ++++             Y +++   CK+G +
Sbjct: 637 --------------AFEYFTKIKESGLKLDVYI-------------YETLLRACCKSGRM 669

Query: 321 DKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPW 380
             A  + +EMS      N   Y  L  G  +   V E          L+   K     P 
Sbjct: 670 QSALAVTREMSFQKIPRNTFIYNILIDGWARRGDVWEA-------EDLMKQMKEDGVPPN 722

Query: 381 LETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKINDPNL--LR 438
           + T  S I    + GD+  AE + EE+           Y TLIK + +  + D  L    
Sbjct: 723 IHTYTSYINACCKAGDMQRAEKVIEEMVDVGLKPNVKTYTTLIKGWARVSLPDRALKCFE 782

Query: 439 RMILGGARPDAETYSLL 455
            M L G +PD  +Y  L
Sbjct: 783 EMKLAGLKPDEASYHCL 799



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 79/362 (21%), Positives = 146/362 (40%), Gaps = 36/362 (9%)

Query: 113 LSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILM 172
           L L Y    + L H  S   F  +I+  +  G +         M+A  + P+   F  L+
Sbjct: 280 LDLTYPFLFKKLLHEPSRREFGLMIVYYAKRGDKHHARATFENMRARGIEPNAFVFTSLV 339

Query: 173 KIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETY----VEALEK 228
              A   ++ G +    +MK   +E   V+Y IL +  A      + +++    +E  E+
Sbjct: 340 HAYAVARDMRGALSCVEEMKSEGLELTIVTYSILISGFA-----KINDSHQSGNMERAEE 394

Query: 229 SMTGNNWSTLDVLIILYGYLAKG----KDLERIWATVQELPNVRSK----SYVLAIEAFG 280
            +       +D  I +Y  +  G    ++  +     + L     K    SY   +  + 
Sbjct: 395 LVREMEEDGIDAPIDVYHSMMHGYTIIQNENKCLVVFERLKECGFKPSIISYGCLLNLYV 454

Query: 281 RIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFID-----KASGLLKEMSMNGC 335
           +I +V++A  +  EM+S       + Y+ +I     NGFI       A  + +EM  +G 
Sbjct: 455 KIGKVAKALSISKEMESCGIKHNNKTYSMLI-----NGFIHLHDFANAFAIFEEMLRSGL 509

Query: 336 KPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKG 395
           +P+   Y  L     K   ++     LE   K       R+  P       IIE +A  G
Sbjct: 510 QPDRAIYNLLIEAFCKMGNMDRAICILEKMQKERMQPSNRAFRP-------IIEGYAVAG 562

Query: 396 DVGNAENLFEELKKANYTKYTFVYNTLIKAYV-KAKINDP-NLLRRMILGGARPDAETYS 453
           D+ +A +  + ++++        YN LI   V K K+    ++L +M + G  P+  TY+
Sbjct: 563 DMKSALDTLDLMRRSGCVPTVMTYNALIHGLVRKHKVQRAVSVLDKMSIAGITPNEHTYT 622

Query: 454 LL 455
           ++
Sbjct: 623 II 624



 Score = 38.9 bits (89), Expect = 5.7,   Method: Compositional matrix adjust.
 Identities = 27/117 (23%), Positives = 55/117 (47%)

Query: 93  QNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNI 152
           +N  +YN L+     +G +  + + MK+M+  G   +   +   I      G  +    +
Sbjct: 686 RNTFIYNILIDGWARRGDVWEAEDLMKQMKEDGVPPNIHTYTSYINACCKAGDMQRAEKV 745

Query: 153 LRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATA 209
           + +M    + P+V T+  L+K  A     +  +K + +MK + ++P+E SY  L T+
Sbjct: 746 IEEMVDVGLKPNVKTYTTLIKGWARVSLPDRALKCFEEMKLAGLKPDEASYHCLVTS 802


>gi|356571194|ref|XP_003553764.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g04760, chloroplastic-like [Glycine max]
          Length = 531

 Score = 75.5 bits (184), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 75/328 (22%), Positives = 143/328 (43%), Gaps = 18/328 (5%)

Query: 45  ALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQGEKLFC-CIPKDYQNELLYNNLVI 103
           ALE    +++E  + P  + Y+ L+E T+   GI +  KL       + Q ++   N +I
Sbjct: 143 ALEFKNQLLKEN-FNPTVVTYTILIEATLLQGGIDEAIKLLDEMFEINLQPDVFPYNSII 201

Query: 104 ACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAP 163
               +G +  + E +  +   G+++  + +N L+    + G+ +    ++  M A     
Sbjct: 202 XMCREGYVDRAFEVISSISSKGYALDVITYNILLRSLXNQGKWEAGFELMSDMVAKGCEA 261

Query: 164 HVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYC---ILATAHAVARLYTVAE 220
           +V T+ +L+     D  +E  + +  DMK+  +EP+   YC   ++A      R+    +
Sbjct: 262 NVVTYSVLISSLCRDGKVEEGVGLLKDMKKKGLEPD--GYCYDPLIAVLCKEGRV----D 315

Query: 221 TYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNV----RSKSYVLAI 276
             +E L+  ++      +     +   L K K  +   +  ++L  V     + SY    
Sbjct: 316 LAIEVLDVMISDGCVPDIVNYNTILACLCKQKRADEALSIFEKLGEVGCSPNASSYNTVF 375

Query: 277 EAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNG-- 334
            A G      RA  + LEM           YNS+IS  C++G +D+A  LL +M M    
Sbjct: 376 SALGSSGHKVRALGMILEMLDXVDPDVI-AYNSLISCLCRDGMVDEAIELLVDMEMESSE 434

Query: 335 CKPNAITYRHLALGCFKSNLVEEGFKAL 362
           CKP+ ++Y  + LG  +   V +  + L
Sbjct: 435 CKPSVVSYNIVLLGLCRVGRVSDATEVL 462



 Score = 47.0 bits (110), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 57/291 (19%), Positives = 126/291 (43%), Gaps = 28/291 (9%)

Query: 147 KTIPN---ILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSY 203
           ++IP+   +L +MK    +P + T++IL+    +   +   ++  + + +    P  V+Y
Sbjct: 103 ESIPHAYQVLDRMKNKGFSPDIVTYNILIGSLCSRGMLHAALEFKNQLLKENFNPTVVTY 162

Query: 204 CILATAHAV-ARLYTVAETYVEALEKSMTGNNWSTLDVLIILY-GYLAKGKDLERIWATV 261
            IL  A  +   +    +   E  E ++  + +    ++ +   GY+      +R +  +
Sbjct: 163 TILIEATLLQGGIDEAIKLLDEMFEINLQPDVFPYNSIIXMCREGYV------DRAFEVI 216

Query: 262 QELPNVRSKSYVLAIEAFGRIAQVSRAEELW---LEMQSVKQLKATE----QYNSVISVY 314
               ++ SK Y L +  +  + +    +  W    E+ S    K  E     Y+ +IS  
Sbjct: 217 S---SISSKGYALDVITYNILLRSLXNQGKWEAGFELMSDMVAKGCEANVVTYSVLISSL 273

Query: 315 CKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKV 374
           C++G +++  GLLK+M   G +P+   Y  L      + L +EG   ++L ++++     
Sbjct: 274 CRDGKVEEGVGLLKDMKKKGLEPDGYCYDPLI-----AVLCKEG--RVDLAIEVLDVMIS 326

Query: 375 RSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKA 425
               P +    +I+    ++     A ++FE+L +   +     YNT+  A
Sbjct: 327 DGCVPDIVNYNTILACLCKQKRADEALSIFEKLGEVGCSPNASSYNTVFSA 377



 Score = 38.1 bits (87), Expect = 9.7,   Method: Compositional matrix adjust.
 Identities = 50/220 (22%), Positives = 84/220 (38%), Gaps = 45/220 (20%)

Query: 271 SYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKA------- 323
           +Y + IEA      +  A +L  EM  +        YNS+I + C+ G++D+A       
Sbjct: 161 TYTILIEATLLQGGIDEAIKLLDEMFEINLQPDVFPYNSIIXM-CREGYVDRAFEVISSI 219

Query: 324 --------------------------SG--LLKEMSMNGCKPNAITYRHLALGCFKSNLV 355
                                     +G  L+ +M   GC+ N +TY  L      S+L 
Sbjct: 220 SSKGYALDVITYNILLRSLXNQGKWEAGFELMSDMVAKGCEANVVTYSVLI-----SSLC 274

Query: 356 EEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKY 415
            +G   +E G+ L+   K +   P       +I +  ++G V  A  + + +        
Sbjct: 275 RDG--KVEEGVGLLKDMKKKGLEPDGYCYDPLIAVLCKEGRVDLAIEVLDVMISDGCVPD 332

Query: 416 TFVYNTLIKAYVKAKINDPNLLRRMILG--GARPDAETYS 453
              YNT++    K K  D  L     LG  G  P+A +Y+
Sbjct: 333 IVNYNTILACLCKQKRADEALSIFEKLGEVGCSPNASSYN 372


>gi|356540307|ref|XP_003538631.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g02860-like [Glycine max]
          Length = 804

 Score = 75.5 bits (184), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 80/404 (19%), Positives = 178/404 (44%), Gaps = 18/404 (4%)

Query: 58  YRPKELDYSYLLEFTIKNHGISQGEKLFCCIPKD--YQNELLYNNLVIACLDKGVIKLSL 115
           + P ++ Y+ LL+   K+    +  K+   +  +      + YN+L+ A    G+++ +L
Sbjct: 295 FTPDKVTYNALLDVFGKSRRPQEAMKVLQEMEANGFSPTSVTYNSLISAYAKGGLLEEAL 354

Query: 116 EYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIE 175
           +   +M   G       +  L+      G+      +  +M+A    P++ TF+ L+K+ 
Sbjct: 355 DLKTQMVHKGIKPDVFTYTTLLSGFEKAGKDDFAIQVFLEMRAVGCKPNICTFNALIKMH 414

Query: 176 ANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNW 235
            N      +MKV+ D+K     P+ V++  L        + +      + ++++      
Sbjct: 415 GNRGKFAEMMKVFDDIKLCNCSPDIVTWNTLLAVFGQNGMDSQVSGIFKEMKRAGFVAER 474

Query: 236 STLDVLIILYGYLAKGKDLERIWATVQE---LPNVRSKSYVLAIEAFGRIAQVSRAEELW 292
            T + LI  Y           ++ ++ E   +P++ + + VLA  A G + +  ++E++ 
Sbjct: 475 DTFNTLISAYSRCGSFDQAMAVYKSMLEAGVVPDLSTYNAVLAALARGGLWE--QSEKVL 532

Query: 293 LEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKS 352
            EM+  +       Y+S++  Y     I++ +   +E+     + +A+  + L L   KS
Sbjct: 533 AEMEDGRCKPNELSYSSLLHAYANGKEIERMNAFAEEIYSGSVETHAVLLKTLVLVNSKS 592

Query: 353 NLVEEGFKA-LELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKAN 411
           +L+ E  +A LEL        + R  +P + T  +++ I+  K  V  A  +   + +  
Sbjct: 593 DLLIETERAFLEL--------RRRGISPDITTLNAMLSIYGRKQMVAKAHEILNFMHETR 644

Query: 412 YTKYTFVYNTLIKAYVKAK--INDPNLLRRMILGGARPDAETYS 453
           +T     YN+L+  Y +++       +LR ++  G +PD  +Y+
Sbjct: 645 FTPSLTTYNSLMYMYSRSENFQKSEEILREVLEKGMKPDRISYN 688



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 78/373 (20%), Positives = 154/373 (41%), Gaps = 20/373 (5%)

Query: 87  CIPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRR 146
           C P    N   +N L+    ++G     ++    +++   S   + +N L+ +    G  
Sbjct: 400 CKP----NICTFNALIKMHGNRGKFAEMMKVFDDIKLCNCSPDIVTWNTLLAVFGQNGMD 455

Query: 147 KTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCIL 206
             +  I ++MK         TF+ L+   +   + +  M VY  M  + V P+  +Y  +
Sbjct: 456 SQVSGIFKEMKRAGFVAERDTFNTLISAYSRCGSFDQAMAVYKSMLEAGVVPDLSTYNAV 515

Query: 207 ATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPN 266
             A A   L+  +E  +  +E      N  +   L+  Y   A GK++ER+ A  +E+ +
Sbjct: 516 LAALARGGLWEQSEKVLAEMEDGRCKPNELSYSSLLHAY---ANGKEIERMNAFAEEIYS 572

Query: 267 VRSKSYVLAIEAFGRIAQVS----RAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDK 322
              +++ + ++    +   S      E  +LE++           N+++S+Y +   + K
Sbjct: 573 GSVETHAVLLKTLVLVNSKSDLLIETERAFLELRRRGISPDITTLNAMLSIYGRKQMVAK 632

Query: 323 ASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLE 382
           A  +L  M      P+  TY  L     +S    E F+  E  ++ +  K ++   P   
Sbjct: 633 AHEILNFMHETRFTPSLTTYNSLMYMYSRS----ENFQKSEEILREVLEKGMK---PDRI 685

Query: 383 TTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKI--NDPNLLRRM 440
           +  ++I  +   G +  A  +F E+K +        YNT I  Y    +     +++R M
Sbjct: 686 SYNTVIYAYCRNGRMKEASRIFSEMKDSALVPDVVTYNTFIATYAADSMFAEAIDVVRYM 745

Query: 441 ILGGARPDAETYS 453
           I  G +PD  TY+
Sbjct: 746 IKQGCKPDQNTYN 758



 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 81/367 (22%), Positives = 144/367 (39%), Gaps = 79/367 (21%)

Query: 125 GHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEAND----HN 180
           G  I    +  LI   SS GR +   N+  +M+ D   P + T+++++ +         N
Sbjct: 188 GVHIDVYAYTCLINAYSSSGRYRDAVNLFNKMQQDGCNPTLITYNVVLNVYGKMGMPWSN 247

Query: 181 IEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDV 240
           +  L++    M+   V P+  +Y  L +      LY  A    + ++             
Sbjct: 248 VTALVEA---MRSRGVAPDLYTYNTLISCCRRGSLYEEAVHLFQQMK------------- 291

Query: 241 LIILYGYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQ 300
              L G+                       +Y   ++ FG+  +   A ++  EM++   
Sbjct: 292 ---LEGFTPD------------------KVTYNALLDVFGKSRRPQEAMKVLQEMEANGF 330

Query: 301 LKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHL--------------- 345
              +  YNS+IS Y K G +++A  L  +M   G KP+  TY  L               
Sbjct: 331 SPTSVTYNSLISAYAKGGLLEEALDLKTQMVHKGIKPDVFTYTTLLSGFEKAGKDDFAIQ 390

Query: 346 ------ALGCFKSNLVEEGFKAL-----------ELGMKLITTKKVRSSTPWLETTLSII 388
                 A+GC K N+    F AL           E+ MK+    K+ + +P + T  +++
Sbjct: 391 VFLEMRAVGC-KPNICT--FNALIKMHGNRGKFAEM-MKVFDDIKLCNCSPDIVTWNTLL 446

Query: 389 EIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKINDPNL--LRRMILGGAR 446
            +F + G       +F+E+K+A +      +NTLI AY +    D  +   + M+  G  
Sbjct: 447 AVFGQNGMDSQVSGIFKEMKRAGFVAERDTFNTLISAYSRCGSFDQAMAVYKSMLEAGVV 506

Query: 447 PDAETYS 453
           PD  TY+
Sbjct: 507 PDLSTYN 513



 Score = 46.6 bits (109), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 65/342 (19%), Positives = 133/342 (38%), Gaps = 45/342 (13%)

Query: 10  VGSAFQSWMREGFPVHRGEIFHSINRLRKLQLNKRALEVMEWVIRERPYRPKELDYSYLL 69
           V   F+   R GF   R      I+   +     +A+ V + ++ E    P    Y+ +L
Sbjct: 458 VSGIFKEMKRAGFVAERDTFNTLISAYSRCGSFDQAMAVYKSML-EAGVVPDLSTYNAVL 516

Query: 70  EFTIKNHGISQGEKLFC------CIPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMRV 123
               +     Q EK+        C P    NEL Y++L+ A  +   I+    + +++  
Sbjct: 517 AALARGGLWEQSEKVLAEMEDGRCKP----NELSYSSLLHAYANGKEIERMNAFAEEIYS 572

Query: 124 LGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEG 183
                  ++   L+++NS             +++   ++P ++T + ++ I      +  
Sbjct: 573 GSVETHAVLLKTLVLVNSKSDLLIETERAFLELRRRGISPDITTLNAMLSIYGRKQMVAK 632

Query: 184 LMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLII 243
             ++ + M  +   P+      L T +++  +Y+ +E + ++ E               I
Sbjct: 633 AHEILNFMHETRFTPS------LTTYNSLMYMYSRSENFQKSEE---------------I 671

Query: 244 LYGYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKA 303
           L   L KG   +RI             SY   I A+ R  ++  A  ++ EM+    +  
Sbjct: 672 LREVLEKGMKPDRI-------------SYNTVIYAYCRNGRMKEASRIFSEMKDSALVPD 718

Query: 304 TEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHL 345
              YN+ I+ Y  +    +A  +++ M   GCKP+  TY  +
Sbjct: 719 VVTYNTFIATYAADSMFAEAIDVVRYMIKQGCKPDQNTYNSI 760


>gi|297729245|ref|NP_001176986.1| Os12g0527850 [Oryza sativa Japonica Group]
 gi|255670359|dbj|BAH95714.1| Os12g0527850 [Oryza sativa Japonica Group]
          Length = 313

 Score = 75.5 bits (184), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 57/244 (23%), Positives = 114/244 (46%), Gaps = 3/244 (1%)

Query: 14  FQSWMREGFPVHRGEIFHSINRLRKLQLNKRALEVMEWVIRERPYRPKELDYSYLLEFTI 73
            + W  EG  V + ++   +  LRK +  K ALE+ EW+  +   R    D++  L+   
Sbjct: 48  LRRWAEEGRTVQKYQLNRVVRELRKYRRFKHALEICEWMRTQPEMRLLPGDHAVHLDLVA 107

Query: 74  KNHGISQGEKLFCCIPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVF 133
           K  G+   EK F  +P+  +     N L+ A +  G    +   +++M   G+    L F
Sbjct: 108 KVRGLPSAEKFFEDMPERAKGPSTCNALLHAYVQHGRRDKAEAMLEEMAKAGYLTCALPF 167

Query: 134 NRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKR 193
           N ++ L  S G  + +P ++++++   + P + T++I +   +  ++++   KVY  MK 
Sbjct: 168 NHMMSLYMSSGELEKVPEMIKELRRYTI-PDLVTYNIWLTYCSKKNSVKAAEKVYDLMKD 226

Query: 194 SEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKD 253
             V P+ +++ +L + +  A L+      +  +EK  +    +    L+ LY  L    D
Sbjct: 227 ERVVPDWMTFSLLGSIYINAGLHVKGRDALVEMEKRASRKERAAYSSLLTLYASLL--ID 284

Query: 254 LERI 257
           L R+
Sbjct: 285 LARV 288


>gi|225433712|ref|XP_002266503.1| PREDICTED: pentatricopeptide repeat-containing protein At1g02060,
           chloroplastic-like [Vitis vinifera]
          Length = 746

 Score = 75.5 bits (184), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 104/474 (21%), Positives = 195/474 (41%), Gaps = 30/474 (6%)

Query: 1   IERLPRGEPVGSAFQSWMREGFP-VHRGEIFHSINRLRKLQLNKRALEVMEWVIRERPYR 59
           + RL   EP     QS + E  P + +  +  ++  +R      +AL    WV   + + 
Sbjct: 69  MARLINTEPWSHELQSSLAELAPSLSKTTVLQTLQLIRT---PAKALHFFRWV-EAKGFT 124

Query: 60  PKELDYSYLLEFTIKNHGISQGEKLFCCIPKDYQNEL-----LYNNLVIACLDKGVIKLS 114
             E  Y  ++E   ++  ++        I K     +      +N+L+ +    G+ + S
Sbjct: 125 HNEQSYFLMIEILGRSRNLNAARNFVFSIEKKSGGAVKLGDRFFNSLIRSYGWAGLFQES 184

Query: 115 LEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQM-KADKVAPHVSTFHILMK 173
           ++  K M+ +G S S + FN L+ +    GR      +  +M     V P   TF+IL++
Sbjct: 185 IKVFKTMKEIGVSPSVVTFNSLLSIVLKRGRTSMAKQLFDEMLDTYGVTPDTYTFNILIR 244

Query: 174 IEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGN 233
               +  ++     + +M R + +P+ V+Y  L      A    +A   V+ + K     
Sbjct: 245 GFCMNSMVDEGFWFFKEMSRFKCDPDVVTYNTLVDGLCRAGKVKIAHNVVKGMVKKSPNL 304

Query: 234 NWSTLDVLIILYGYLAKGKDLERIWATVQEL------PNVRSKSYVLAIEAFGRIAQVSR 287
           + + +    ++ GY  K +D+    + + E+      PN    +Y   I+      ++ +
Sbjct: 305 SPNVVTYTTLIRGYCMK-QDMAEALSLLAEMVSRGLKPN--KITYNTLIQGLCEAQKLDK 361

Query: 288 AEELWLEMQSVKQ-LKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLA 346
            +E+   M      +  T   N++I  +C  G +++A  + ++MS    +P++ TY  L 
Sbjct: 362 IKEILEGMVGDGGFIPDTCTLNTLIKAHCTMGKLEEAFSVFEKMSELRVQPDSATYSVLV 421

Query: 347 LG-CFKSNL--VEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENL 403
              C + +    EE F   EL  K I    V    P +     + E     G    AE +
Sbjct: 422 RSLCQRGDFRRAEEFFD--ELAEKEILLHDV-GCKPLVAAYNPMFEYLCSNGKTKKAERV 478

Query: 404 FEELKKANYTKYTFVYNTLIKAYVKAKINDP--NLLRRMILGGARPDAETYSLL 455
           F +L K   T+    Y TLI  + +    +   +LL  M+     PDAETY L+
Sbjct: 479 FRQLMKRG-TQDPPSYKTLILGHCREGTPEAGFDLLVLMLRRDFVPDAETYGLM 531


>gi|357450627|ref|XP_003595590.1| hypothetical protein MTR_2g049740 [Medicago truncatula]
 gi|355484638|gb|AES65841.1| hypothetical protein MTR_2g049740 [Medicago truncatula]
          Length = 859

 Score = 75.5 bits (184), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 86/345 (24%), Positives = 151/345 (43%), Gaps = 23/345 (6%)

Query: 122 RVLGHSISYLVFNRLIILNS--SPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDH 179
           +++G  I   V+   I++N+    GR      +L +M  + + P+V T++ L+       
Sbjct: 216 QIVGTGIVPDVYMCSIVVNAHCQVGRVDVAMEVLEKMVKEGLEPNVVTYNGLVNGYVGRG 275

Query: 180 NIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYV-EALEKSMTGNNWSTL 238
           + EG+ +V   M    V  N V+  +L   +        AE  + E  E  +   +    
Sbjct: 276 DFEGVERVLRLMSERGVSRNVVTCTMLMRGYCKKGKMDEAEKLLREVEEDELLVVDERVY 335

Query: 239 DVLIILYGYLAKGKDLERIWATVQELPNVRSKSYVLA----IEAFGRIAQVSRAEELWLE 294
            VL+  Y  + + +D  RI     E+  V  K  ++     I+ + ++ QV  AE +++ 
Sbjct: 336 GVLVDGYCQMGRMEDAVRIR---DEMLRVGLKVNMVICNTLIKGYCKLGQVCEAERVFVG 392

Query: 295 MQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNL 354
           M           YN+++  YC+ G + KA  L +EM  +G  P  +TY  +  G     L
Sbjct: 393 MVDWNLKPDCYSYNTLLDGYCREGKVSKAFMLCEEMLGDGITPTVVTYNTVIKG-----L 447

Query: 355 VEEGF--KALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANY 412
           V+ G    AL L   ++     R  TP   +  ++++ F + GD   A  L++E+    +
Sbjct: 448 VDVGSYDDALHLWHLMVE----RGVTPNEISCCTMLDCFFKMGDSDRAMMLWKEILGRGF 503

Query: 413 TKYTFVYNTLIKAYVK-AKINDPN-LLRRMILGGARPDAETYSLL 455
           TK T  +NT+I    K  K+ +   +  RM   G  PD  TY  L
Sbjct: 504 TKSTVAFNTMISGLCKMGKLMEAGAVFDRMKELGLSPDEITYRTL 548



 Score = 56.6 bits (135), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 66/280 (23%), Positives = 121/280 (43%), Gaps = 28/280 (10%)

Query: 186 KVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILY 245
           +V+  M    ++P+  SY  L   +   R   V++ ++  L + M G+  +     ++ Y
Sbjct: 388 RVFVGMVDWNLKPDCYSYNTLLDGYC--REGKVSKAFM--LCEEMLGDGITPT---VVTY 440

Query: 246 GYLAKG-------KDLERIWATVQE---LPNVRSKSYVLAIEAFGRIAQVSRAEELWLEM 295
             + KG        D   +W  + E    PN    S    ++ F ++    RA  LW E+
Sbjct: 441 NTVIKGLVDVGSYDDALHLWHLMVERGVTPN--EISCCTMLDCFFKMGDSDRAMMLWKEI 498

Query: 296 QSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLV 355
                 K+T  +N++IS  CK G + +A  +   M   G  P+ ITYR L+ G  K+  V
Sbjct: 499 LGRGFTKSTVAFNTMISGLCKMGKLMEAGAVFDRMKELGLSPDEITYRTLSDGYCKNGNV 558

Query: 356 EEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKY 415
           +E F+     +K +  ++  S++  +E   S+I+   +   + +  +L  E++    +  
Sbjct: 559 QEAFQ-----IKGVMERQAMSAS--IEMYNSLIDGLFKIRKLNDVTDLLVEMQTRGLSPN 611

Query: 416 TFVYNTLIKAYVKAKINDP--NLLRRMILGGARPDAETYS 453
              Y TLI  +   +  D   +L   MI  G  P+    S
Sbjct: 612 VVTYGTLISGWCDEQKLDKAFHLYFEMIERGFTPNVVVCS 651



 Score = 47.0 bits (110), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 73/354 (20%), Positives = 131/354 (37%), Gaps = 71/354 (20%)

Query: 125 GHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGL 184
           G + S + FN +I      G+      +  +MK   ++P   T+  L      + N++  
Sbjct: 502 GFTKSTVAFNTMISGLCKMGKLMEAGAVFDRMKELGLSPDEITYRTLSDGYCKNGNVQEA 561

Query: 185 MKVYSDMKRSEVEPN-EVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLII 243
            ++   M+R  +  + E+   ++     + +L  V +  VE   + ++ N        ++
Sbjct: 562 FQIKGVMERQAMSASIEMYNSLIDGLFKIRKLNDVTDLLVEMQTRGLSPN--------VV 613

Query: 244 LYGYLAKG----KDLERIWATVQEL------PNVRSKSYVLAIEAFGRIAQVSRA----- 288
            YG L  G    + L++ +    E+      PNV   S +  + +  R  ++S A     
Sbjct: 614 TYGTLISGWCDEQKLDKAFHLYFEMIERGFTPNVVVCSKI--VSSLYRDDRISEATVILD 671

Query: 289 --------------------EELWLEMQSV----------KQLKATEQYNSVISVYCKNG 318
                                +L LE Q +            L     YN  I   CK+G
Sbjct: 672 KMLDFDILAVHNKCSDKLVKNDLTLEAQKIADSLDKSDICNSLSNNIVYNIAIDGLCKSG 731

Query: 319 FIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFK----ALELGMKLITTKKV 374
            +D+A  +L  +   G  P+  TY  L   C  S  V+E FK     LE G+        
Sbjct: 732 KLDEARSVLSVLMSRGFLPDNFTYCTLIHACSVSGNVDEAFKLRDEMLEKGL-------- 783

Query: 375 RSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVK 428
               P +    ++I    + G++  A+ LF +L +         YN LI  Y +
Sbjct: 784 ---IPNITIYNALINGLCKLGNIDRAQRLFYKLYQKGLVPNAVTYNILIGCYCR 834



 Score = 45.1 bits (105), Expect = 0.073,   Method: Compositional matrix adjust.
 Identities = 55/265 (20%), Positives = 112/265 (42%), Gaps = 41/265 (15%)

Query: 192 KRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVL---------- 241
           + S   P+ +SY IL      ARL+  A T +  L      NN+    V           
Sbjct: 93  QNSHYRPHSLSYSILLHILTHARLFPEATTVLRQLMDLHCTNNYRAYAVCNHVFSVYKEF 152

Query: 242 --------IILYGYLAKGKDLERIW-----ATVQELPNVRSKSYVLA---IEAFGRIAQV 285
                   +++  +  +G     ++     + +  +P +RS S++L     +  GR+A +
Sbjct: 153 GFCSGVFDMLMKAFAERGMTKHALYVFDEMSRIGRVPGLRSCSFLLGKLVQKGEGRVAVM 212

Query: 286 SRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHL 345
                ++ ++     +      + V++ +C+ G +D A  +L++M   G +PN +TY  L
Sbjct: 213 -----VFDQIVGTGIVPDVYMCSIVVNAHCQVGRVDVAMEVLEKMVKEGLEPNVVTYNGL 267

Query: 346 ALGCFKSNLVEEG-FKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLF 404
             G      V  G F+ +E  ++L++ + V  +   + T   ++  + +KG +  AE L 
Sbjct: 268 VNG-----YVGRGDFEGVERVLRLMSERGVSRN---VVTCTMLMRGYCKKGKMDEAEKLL 319

Query: 405 EELKKANYTKYT-FVYNTLIKAYVK 428
            E+++         VY  L+  Y +
Sbjct: 320 REVEEDELLVVDERVYGVLVDGYCQ 344



 Score = 44.3 bits (103), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 76/342 (22%), Positives = 146/342 (42%), Gaps = 45/342 (13%)

Query: 152 ILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHA 211
           +  +M  D + P V T++ ++K   +  + +  + ++  M    V PNE+S C +     
Sbjct: 424 LCEEMLGDGITPTVVTYNTVIKGLVDVGSYDDALHLWHLMVERGVTPNEISCCTMLDC-- 481

Query: 212 VARLYTVAET-YVEALEKSMTGNNW--STLDVLIILYGYLAKGKDLER--IWATVQEL-- 264
               + + ++     L K + G  +  ST+    ++ G    GK +E   ++  ++EL  
Sbjct: 482 ---FFKMGDSDRAMMLWKEILGRGFTKSTVAFNTMISGLCKMGKLMEAGAVFDRMKELGL 538

Query: 265 -PNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKA 323
            P+    +Y    + + +   V  A ++   M+      + E YNS+I    K   ++  
Sbjct: 539 SPD--EITYRTLSDGYCKNGNVQEAFQIKGVMERQAMSASIEMYNSLIDGLFKIRKLNDV 596

Query: 324 SGLLKEMSMNGCKPNAITYRHLALG-CFKSNL----------VEEGFKA-LELGMKLITT 371
           + LL EM   G  PN +TY  L  G C +  L          +E GF   + +  K++++
Sbjct: 597 TDLLVEMQTRGLSPNVVTYGTLISGWCDEQKLDKAFHLYFEMIERGFTPNVVVCSKIVSS 656

Query: 372 ----KKVRSSTPWLETTL--SIIEIFAEKGD--VGN-----AENLFEELKKA---NYTKY 415
                ++  +T  L+  L   I+ +  +  D  V N     A+ + + L K+   N    
Sbjct: 657 LYRDDRISEATVILDKMLDFDILAVHNKCSDKLVKNDLTLEAQKIADSLDKSDICNSLSN 716

Query: 416 TFVYNTLIKAYVKA-KINDP-NLLRRMILGGARPDAETYSLL 455
             VYN  I    K+ K+++  ++L  ++  G  PD  TY  L
Sbjct: 717 NIVYNIAIDGLCKSGKLDEARSVLSVLMSRGFLPDNFTYCTL 758


>gi|302761054|ref|XP_002963949.1| hypothetical protein SELMODRAFT_166434 [Selaginella moellendorffii]
 gi|300167678|gb|EFJ34282.1| hypothetical protein SELMODRAFT_166434 [Selaginella moellendorffii]
          Length = 1365

 Score = 75.5 bits (184), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 71/330 (21%), Positives = 150/330 (45%), Gaps = 15/330 (4%)

Query: 132 VFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMK-VYSD 190
           V+N L+ + +  G   ++  +L +M+     P + TF+I++K        EGL   +  D
Sbjct: 127 VYNSLMSVYARHGDWNSVQQLLCRMQDRGCRPDLVTFNIVIKARTRGGMQEGLASSLLQD 186

Query: 191 MKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAK 250
           +  + + P+ ++Y  L +A ++    + A    E +++     +  T + +I +YG   +
Sbjct: 187 VYAAGLRPDTITYNTLISACSLNNRLSDAILIFEEMQRQGCDPDIWTYNAMISVYGRAGR 246

Query: 251 GKDLERIWATVQE---LPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQY 307
            +    I+  +QE    P+  + + VL   AF R  ++   E +   M+  +       Y
Sbjct: 247 VEAASSIFRIMQEQGFTPDAVTYNSVL--HAFARDGRIEEVERIRGMMRDARCSSDEITY 304

Query: 308 NSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMK 367
           N++I +Y K G   KA  L  +M   G  P+++T+  L     K+  V E     E  +K
Sbjct: 305 NTMIHMYGKAGMHRKAEELYVQMKEEGRCPDSVTFTVLIDTLGKAGFVNEAAAMFEDMLK 364

Query: 368 LITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYV 427
                +VR   P L+   ++I  +A+     +AE+ +  + +A        Y+ ++  + 
Sbjct: 365 ----SQVR---PTLQAFSAMICAYAKADMFTDAEHTYSCMLRAGVRPDLLAYSVMLDVFF 417

Query: 428 KAKINDPNLL--RRMILGGARPDAETYSLL 455
           KA + +  ++  + M+  G +P+   Y+++
Sbjct: 418 KAGMPEKCIILYKAMVGSGLKPELSVYAIM 447



 Score = 65.1 bits (157), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 74/359 (20%), Positives = 151/359 (42%), Gaps = 14/359 (3%)

Query: 94   NELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNIL 153
            N   Y+ L+ A  + G  + +   +  M   G   +    N ++      G+ K I    
Sbjct: 680  NTSAYSALLSAYAETGNFERATRALDNMVAAGLQPNATCANYVLEAFGRAGKAKEISEFF 739

Query: 154  RQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVA 213
            +++    ++P+  TF ++    + + N+E    +Y  MK +   P+   +  L   ++  
Sbjct: 740  QRLPEMGISPNSRTFVVIFHAFSRNGNLEEARSMYRQMKEAGFSPSIQVFKALLALYSRE 799

Query: 214  RLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQEL---PNVRSK 270
             +   AE  V+ ++K+    +    + +I LY  L   ++   ++  +QE+   P+  + 
Sbjct: 800  TVEIDAEELVKDIKKAGLELDIDIYNHMISLYSKLGSYRNAALVFKGMQEIGCSPD--AT 857

Query: 271  SYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEM 330
            ++   I  + R   V  A+ L  EM           Y ++IS Y +    + A  + K +
Sbjct: 858  TFNTLIMLYSRNQMVQEAQALLREMIKTGNAPNISTYTTLISAYGRLQAYEDAELVFKSI 917

Query: 331  SMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEI 390
            +  GCKP+A  Y ++ +  ++     E  K  E    +I   KV    P L T   +++ 
Sbjct: 918  AETGCKPDATAY-NVMINVYRK--AGEHRKIEE----IIEQMKVDGFEPSLTTIHMLMDS 970

Query: 391  FAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAK--INDPNLLRRMILGGARP 447
            + + G  G AE + E L +   +     Y ++I +++  K  ++    LR+M     RP
Sbjct: 971  YGKGGATGKAEEVLETLPEIGMSPDAIHYTSIINSHLNNKDYLSAVIWLRKMTDACVRP 1029



 Score = 55.5 bits (132), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 59/320 (18%), Positives = 126/320 (39%), Gaps = 53/320 (16%)

Query: 94  NELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNIL 153
           + + YN L+ AC     +  ++   ++M+  G       +N +I +    GR +   +I 
Sbjct: 195 DTITYNTLISACSLNNRLSDAILIFEEMQRQGCDPDIWTYNAMISVYGRAGRVEAASSIF 254

Query: 154 RQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVA 213
           R M+     P   T++ ++   A D  IE + ++   M+ +    +E++Y          
Sbjct: 255 RIMQEQGFTPDAVTYNSVLHAFARDGRIEEVERIRGMMRDARCSSDEITY---------- 304

Query: 214 RLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQE---LPNVRSK 270
                                    + +I +YG     +  E ++  ++E    P+  S 
Sbjct: 305 -------------------------NTMIHMYGKAGMHRKAEELYVQMKEEGRCPD--SV 337

Query: 271 SYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEM 330
           ++ + I+  G+   V+ A  ++ +M   +     + ++++I  Y K      A      M
Sbjct: 338 TFTVLIDTLGKAGFVNEAAAMFEDMLKSQVRPTLQAFSAMICAYAKADMFTDAEHTYSCM 397

Query: 331 SMNGCKPNAITYRHLALGCFKSNLVEEG---FKALELGMKLITTKKVRSSTPWLETTLSI 387
              G +P+ + Y  +    FK+ + E+    +KA+ +G  L          P L     +
Sbjct: 398 LRAGVRPDLLAYSVMLDVFFKAGMPEKCIILYKAM-VGSGL---------KPELSVYAIM 447

Query: 388 IEIFAEKGDVGNAENLFEEL 407
           + +F +K  V   ENL +E+
Sbjct: 448 VRVFYQKSSVAEIENLSKEM 467



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 60/271 (22%), Positives = 118/271 (43%), Gaps = 25/271 (9%)

Query: 195 EVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDL 254
           +V+ + +   I+A+ +   +L+  AE     L++     N S    L+  Y   A+  + 
Sbjct: 642 DVKDSAMHVAIIAS-YGKLKLWQNAEIVFRDLQQHGFAGNTSAYSALLSAY---AETGNF 697

Query: 255 ERIWATVQEL------PNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYN 308
           ER    +  +      PN    +YVL  EAFGR  +     E +  +  +     +  + 
Sbjct: 698 ERATRALDNMVAAGLQPNATCANYVL--EAFGRAGKAKEISEFFQRLPEMGISPNSRTFV 755

Query: 309 SVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKL 368
            +   + +NG +++A  + ++M   G  P+   ++ L L  +    VE    A EL    
Sbjct: 756 VIFHAFSRNGNLEEARSMYRQMKEAGFSPSIQVFKAL-LALYSRETVE--IDAEEL---- 808

Query: 369 ITTKKVRSSTPWLETTL--SIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAY 426
              K ++ +   L+  +   +I ++++ G   NA  +F+ +++   +     +NTLI  Y
Sbjct: 809 --VKDIKKAGLELDIDIYNHMISLYSKLGSYRNAALVFKGMQEIGCSPDATTFNTLIMLY 866

Query: 427 VKAKI--NDPNLLRRMILGGARPDAETYSLL 455
            + ++      LLR MI  G  P+  TY+ L
Sbjct: 867 SRNQMVQEAQALLREMIKTGNAPNISTYTTL 897



 Score = 50.1 bits (118), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 47/252 (18%), Positives = 114/252 (45%), Gaps = 8/252 (3%)

Query: 116  EYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIE 175
            E +K ++  G  +   ++N +I L S  G  +    + + M+    +P  +TF+ L+ + 
Sbjct: 807  ELVKDIKKAGLELDIDIYNHMISLYSKLGSYRNAALVFKGMQEIGCSPDATTFNTLIMLY 866

Query: 176  ANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNW 235
            + +  ++    +  +M ++   PN  +Y  L +A+   + Y  AE   +++ ++    + 
Sbjct: 867  SRNQMVQEAQALLREMIKTGNAPNISTYTTLISAYGRLQAYEDAELVFKSIAETGCKPDA 926

Query: 236  STLDVLIILYGYLAKGKDLERIWATVQELPNVRSKSYV-LAIEAFGRIAQVSRAEELWLE 294
            +  +V+I +Y    + + +E I   ++      S + + + ++++G+     +AEE+   
Sbjct: 927  TAYNVMINVYRKAGEHRKIEEIIEQMKVDGFEPSLTTIHMLMDSYGKGGATGKAEEVLET 986

Query: 295  MQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCF--KS 352
            +  +        Y S+I+ +  N     A   L++M+    +P      H+ + CF   +
Sbjct: 987  LPEIGMSPDAIHYTSIINSHLNNKDYLSAVIWLRKMTDACVRPT-----HVTITCFVGAA 1041

Query: 353  NLVEEGFKALEL 364
            ++ E    AL L
Sbjct: 1042 SVCERSSHALML 1053



 Score = 41.6 bits (96), Expect = 0.92,   Method: Compositional matrix adjust.
 Identities = 46/208 (22%), Positives = 93/208 (44%), Gaps = 15/208 (7%)

Query: 246 GYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATE 305
           G L+  +DL    ++++  P+V +  Y        +  + S AEE     Q+  Q++ ++
Sbjct: 520 GKLSDARDLVHAVSSIE--PSVAAHLYKRLAVMLAKAGRFSEAEEEMRTSQTYGQVQVSD 577

Query: 306 QYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFK--ALE 363
               +++ Y + G  D+A     +M+  G + +A   +  A+ C+      +GF   A E
Sbjct: 578 FLKVLVASYDRAGMQDEALARFLDMTTEGLEMDAEVLQ-TAVMCY----CRKGFAFVAHE 632

Query: 364 LGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLI 423
           L +  +    V+ S       ++II  + +     NAE +F +L++  +   T  Y+ L+
Sbjct: 633 LLIDCLHAFDVKDSA----MHVAIIASYGKLKLWQNAEIVFRDLQQHGFAGNTSAYSALL 688

Query: 424 KAYVKAKIND--PNLLRRMILGGARPDA 449
            AY +    +     L  M+  G +P+A
Sbjct: 689 SAYAETGNFERATRALDNMVAAGLQPNA 716


>gi|125558723|gb|EAZ04259.1| hypothetical protein OsI_26403 [Oryza sativa Indica Group]
          Length = 528

 Score = 75.5 bits (184), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 80/415 (19%), Positives = 170/415 (40%), Gaps = 57/415 (13%)

Query: 59  RPKELDYSYLLEFTIKNHGISQGEKLF-----CCIPKDYQNELLYNNLVIACLDKGVIKL 113
           +P+   Y+ LL+  +K   +   E++      C +  D   E  Y+ LV A    G  + 
Sbjct: 156 KPRTRAYNALLKGYVKIGSLKNAEQVLDEMSQCGVAPD---EATYSLLVDAYTRAGRWES 212

Query: 114 SLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMK 173
           +   +K+M   G   S  VF+R++      G  +    +LR+M A  V P    +++++ 
Sbjct: 213 ARILLKEMEADGVKPSSYVFSRILAGFRDRGEWQKAFAVLREMHASGVRPDRHFYNVMID 272

Query: 174 IEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGN 233
                + +   M  +  M+   +EP+ V++  L  AH     +  A    + + +S    
Sbjct: 273 TFGKYNCLGHAMDAFDRMREEGIEPDVVTWNTLIDAHCKGGRHDRAIELFDEMRESNCPL 332

Query: 234 NWSTLDVLIILYGYLAKGKDLERIWATVQE---LPNVRSKSYVLAIEAFGRIAQVSRAEE 290
             +T +++I L G   + + +E + A ++E   +PN+   +Y   ++ +GR  +   A +
Sbjct: 333 GTTTYNIMINLLGEEQRWEGVEAMLAEMKEQGLVPNI--ITYTTLVDVYGRSGRFKEAVD 390

Query: 291 LWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCF 350
               M++     ++  Y+++++ Y + G  D A  ++K M  +G + + +          
Sbjct: 391 CIEAMKADGLKPSSTMYHALVNAYAQRGLADHALNVVKAMRADGLEASTVVLN------- 443

Query: 351 KSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKA 410
                                              S+I  F E   +  A ++ + +K+ 
Sbjct: 444 -----------------------------------SLINAFGEDRRIAEAFSVLQFMKEN 468

Query: 411 NYTKYTFVYNTLIKAYVKAKIND--PNLLRRMILGGARPDAETYSLLKLAEQFQK 463
                   Y TL+KA ++ +  +  P +   MI  G  PD +  ++L+ A ++ K
Sbjct: 469 GLRPDVITYTTLMKALIRVEQFEKVPVIYEEMITSGCAPDRKARAMLRSALRYMK 523



 Score = 65.5 bits (158), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 72/348 (20%), Positives = 149/348 (42%), Gaps = 21/348 (6%)

Query: 97  LYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPN----I 152
           L+++L+ A     +   +LE +   + +G +      N +  L SS G  + +       
Sbjct: 90  LFSDLISAFARARLPDAALELLASAQAIGLTPRS---NAVTALISSLGSARRVAEAEALF 146

Query: 153 LRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAV 212
           L    A ++ P    ++ L+K      +++   +V  +M +  V P+E +Y +L  A+  
Sbjct: 147 LEFFLAGEIKPRTRAYNALLKGYVKIGSLKNAEQVLDEMSQCGVAPDEATYSLLVDAYTR 206

Query: 213 ARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQEL--PNVRSK 270
           A  +  A   ++ +E    G   S+     IL G+  +G + ++ +A ++E+    VR  
Sbjct: 207 AGRWESARILLKEMEAD--GVKPSSYVFSRILAGFRDRG-EWQKAFAVLREMHASGVRPD 263

Query: 271 S--YVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLK 328
              Y + I+ FG+   +  A + +  M+          +N++I  +CK G  D+A  L  
Sbjct: 264 RHFYNVMIDTFGKYNCLGHAMDAFDRMREEGIEPDVVTWNTLIDAHCKGGRHDRAIELFD 323

Query: 329 EMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSII 388
           EM  + C     TY ++ +         EG +A      ++   K +   P + T  +++
Sbjct: 324 EMRESNCPLGTTTY-NIMINLLGEEQRWEGVEA------MLAEMKEQGLVPNIITYTTLV 376

Query: 389 EIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKINDPNL 436
           +++   G    A +  E +K       + +Y+ L+ AY +  + D  L
Sbjct: 377 DVYGRSGRFKEAVDCIEAMKADGLKPSSTMYHALVNAYAQRGLADHAL 424


>gi|115458970|ref|NP_001053085.1| Os04g0477200 [Oryza sativa Japonica Group]
 gi|113564656|dbj|BAF14999.1| Os04g0477200, partial [Oryza sativa Japonica Group]
          Length = 528

 Score = 75.5 bits (184), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 76/362 (20%), Positives = 141/362 (38%), Gaps = 84/362 (23%)

Query: 96  LLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQ 155
           ++YN L+    D+G +  +L Y  +M   G +++   +N L+      GR      ++ +
Sbjct: 218 VMYNALIGGYCDQGKLDTALLYRDRMVERGVAMTVATYNLLVHALFMDGRGTEAYELVEE 277

Query: 156 MKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARL 215
           M    +AP V T++IL+     + N++  ++++ +M R  V    V+Y  L   +A+++ 
Sbjct: 278 MGGKGLAPDVFTYNILINGHCKEGNVKKALEIFENMSRRGVRATVVTYTAL--IYALSKK 335

Query: 216 YTVAET---YVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSKSY 272
             V ET   + EA+ + +  +        ++LY  L                        
Sbjct: 336 GQVQETDKLFDEAVRRGIRPD--------LVLYNAL------------------------ 363

Query: 273 VLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSM 332
              I +      + RA E+  EM+  +       YN+++   C  G +D+A  L+ EM+ 
Sbjct: 364 ---INSHSTSGNIDRAFEIMGEMEKKRIAPDDVTYNTLMRGLCLLGRVDEARKLIDEMTE 420

Query: 333 NGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFA 392
            G +P+ +TY  L  G                                          ++
Sbjct: 421 RGIQPDLVTYNTLISG------------------------------------------YS 438

Query: 393 EKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKINDP--NLLRRMILGGARPDAE 450
            KGDV +A  +  E+    +      YN LI+   K    D   N+++ M+  G  PD  
Sbjct: 439 MKGDVKDALRIRNEMMNKGFNPTLLTYNALIQGLCKNGQGDDAENMVKEMVENGITPDDS 498

Query: 451 TY 452
           TY
Sbjct: 499 TY 500


>gi|414882142|tpg|DAA59273.1| TPA: hypothetical protein ZEAMMB73_713491 [Zea mays]
          Length = 987

 Score = 75.5 bits (184), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 97/413 (23%), Positives = 167/413 (40%), Gaps = 55/413 (13%)

Query: 93  QNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNI 152
           +NE  Y  L+    +   ++ +L  +  M   G S++   +  LI      GR      +
Sbjct: 247 RNEYSYTILIQGLCEARCVREALVLVFMMVHDGCSLNLHTYTLLIKGLCKEGRIHDARGL 306

Query: 153 LRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAV 212
           L +M    V P V T++ ++        ++  + + + M+++   P++ +Y  L      
Sbjct: 307 LDEMPLRGVVPSVWTYNAMIDGYCKSGRMKDALGIKALMEQNGCNPDDWTYNSLIYGLCG 366

Query: 213 ARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSKSY 272
            +L    E    A+ +  T    + +    ++ GY       ERI   ++   N+ S + 
Sbjct: 367 GKLDEAEELLNGAIARGFTP---TVITFTNLINGYCKA----ERIDDALRVKSNMISSNC 419

Query: 273 VLAIEAFGRIAQV-------SRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASG 325
            L ++A+G +  V         A+E   EM +         Y S+I  YCK G +  A  
Sbjct: 420 KLDLQAYGVLINVLIKKCRLKEAKETLNEMFANGLAPNVVTYTSIIDGYCKVGMVGAALE 479

Query: 326 LLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTL 385
           + K M   GC PNA TY  L  G     L+++  K L   M LIT  +    TP + T  
Sbjct: 480 VFKLMEHEGCHPNAWTYGSLIYG-----LIQD--KKLHKAMALITKMQEDGITPGVITYT 532

Query: 386 SIIEIFAEKGDVGNAENLFEELKKANYT---------------------KYTFV------ 418
           ++I+   +K +  NA  LFE +++   T                      Y+F+      
Sbjct: 533 TLIQGQCKKHEFDNAFRLFEMMEQNGLTPDEQAYNVLTDALCKSGRAEEAYSFLVRKGVV 592

Query: 419 -----YNTLIKAYVKAKIND--PNLLRRMILGGARPDAETYSLLKLAEQFQKK 464
                Y +L+  + KA   D    L+ +M+  G + D  TYS+L  A   QKK
Sbjct: 593 LTKVTYTSLVDGFSKAGNTDFAAVLIEKMVNEGCKADLYTYSVLLQALCKQKK 645



 Score = 68.2 bits (165), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 88/418 (21%), Positives = 158/418 (37%), Gaps = 68/418 (16%)

Query: 94  NELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNIL 153
           N + Y +++      G++  +LE  K M   G   +   +  LI       +      ++
Sbjct: 457 NVVTYTSIIDGYCKVGMVGAALEVFKLMEHEGCHPNAWTYGSLIYGLIQDKKLHKAMALI 516

Query: 154 RQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHA-- 211
            +M+ D + P V T+  L++ +   H  +   +++  M+++ + P+E +Y +L  A    
Sbjct: 517 TKMQEDGITPGVITYTTLIQGQCKKHEFDNAFRLFEMMEQNGLTPDEQAYNVLTDALCKS 576

Query: 212 ---------VARLYTVAE--TYVEALEKSMTGNNWSTLDVLI----------ILYGY--- 247
                    + R   V    TY   ++      N     VLI           LY Y   
Sbjct: 577 GRAEEAYSFLVRKGVVLTKVTYTSLVDGFSKAGNTDFAAVLIEKMVNEGCKADLYTYSVL 636

Query: 248 ---LAKGKDLERIWATVQELPNVRSK----SYVLAIEAFGRIAQVSRAEELWLEMQSVKQ 300
              L K K L    + + ++     K    +Y + I    +  +   A+ L+ EM S   
Sbjct: 637 LQALCKQKKLNEALSILDQMTVSGVKCNIVAYTIIISEMIKEGKHDHAKSLFNEMISSGH 696

Query: 301 LKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFK 360
             +   Y   IS YCK G I++A  L+ EM  +G  P+ +TY     GC     ++  F 
Sbjct: 697 KPSATTYTVFISSYCKIGRIEEAEHLIGEMERDGVTPDVVTYNIFINGCGHMGYIDRAFS 756

Query: 361 ALE---------------------LGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGN 399
            L+                     L M LI    V +S  W    L+++           
Sbjct: 757 TLKRMVDASCEPNCWTYWLLLKHFLKMSLINAHYVDTSGMWNWIELNMV----------- 805

Query: 400 AENLFEELKKANYTKYTFVYNTLIKAYVKA-KINDPNLLRRMILG-GARPDAETYSLL 455
              L E + K         Y+++I  + KA ++ +  +L   +LG    P+ E Y++L
Sbjct: 806 -WQLLERMMKHGLNPTVVTYSSIIAGFCKATRLEEACVLLDHMLGKDISPNEEIYTML 862



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 70/280 (25%), Positives = 112/280 (40%), Gaps = 17/280 (6%)

Query: 182 EGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVL 241
           E + K+YS + +  + P+ V+Y  +  A+       +A  Y   L +S  G    T    
Sbjct: 161 EYMGKLYSHLVQEGLLPDTVTYNTMIMAYCKKGSLAIAHRYFCLLRES--GMQMDTYTCN 218

Query: 242 IILYGYLAKGKDLERIWATVQELPNVRSK----SYVLAIEAFGRIAQVSRAEELWLEMQS 297
            +L GY  +  DL +    +  +P +  +    SY + I+       V  A  L   M  
Sbjct: 219 ALLLGY-CRTSDLRKACWLLMMMPLMGCRRNEYSYTILIQGLCEARCVREALVLVFMMVH 277

Query: 298 VKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEE 357
                    Y  +I   CK G I  A GLL EM + G  P+  TY  +  G  KS  +++
Sbjct: 278 DGCSLNLHTYTLLIKGLCKEGRIHDARGLLDEMPLRGVVPSVWTYNAMIDGYCKSGRMKD 337

Query: 358 GFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTF 417
                 LG+K +  +   +   W   +L I  +   K D   AE L        +T    
Sbjct: 338 A-----LGIKALMEQNGCNPDDWTYNSL-IYGLCGGKLD--EAEELLNGAIARGFTPTVI 389

Query: 418 VYNTLIKAYVKA-KINDPNLLR-RMILGGARPDAETYSLL 455
            +  LI  Y KA +I+D   ++  MI    + D + Y +L
Sbjct: 390 TFTNLINGYCKAERIDDALRVKSNMISSNCKLDLQAYGVL 429



 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 68/338 (20%), Positives = 139/338 (41%), Gaps = 54/338 (15%)

Query: 151 NILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAH 210
           +IL QM    V  ++  + I++     +   +    ++++M  S  +P+  +Y +  +++
Sbjct: 651 SILDQMTVSGVKCNIVAYTIIISEMIKEGKHDHAKSLFNEMISSGHKPSATTYTVFISSY 710

Query: 211 AVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSK 270
                   AE  +  +E+     +  T ++ I   G++     ++R ++T++ + +   +
Sbjct: 711 CKIGRIEEAEHLIGEMERDGVTPDVVTYNIFINGCGHMGY---IDRAFSTLKRMVDASCE 767

Query: 271 ----SYVLAIEAFGRIAQV------SRAEELWLEMQSVKQL----------KATEQYNSV 310
               +Y L ++ F +++ +      +     W+E+  V QL               Y+S+
Sbjct: 768 PNCWTYWLLLKHFLKMSLINAHYVDTSGMWNWIELNMVWQLLERMMKHGLNPTVVTYSSI 827

Query: 311 ISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGC-----------FKSNLVEEGF 359
           I+ +CK   +++A  LL  M      PN   Y  L   C           F ++++E GF
Sbjct: 828 IAGFCKATRLEEACVLLDHMLGKDISPNEEIYTMLIKCCCDIKLFGKAVSFVTDMIEFGF 887

Query: 360 KALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVY 419
           +                  P LE+   +I    ++GD   A++LF +L   +Y      +
Sbjct: 888 Q------------------PQLESYHYLIVGLCDEGDYDRAKSLFCDLLGMDYNHNEVAW 929

Query: 420 NTLIKAYVKAKIND--PNLLRRMILGGARPDAETYSLL 455
             L    +KA   D    LL  M     R D+E+YS+L
Sbjct: 930 KILNDGLLKAGHVDFCSQLLAAMDNRHCRIDSESYSML 967


>gi|359475386|ref|XP_003631674.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39710-like [Vitis vinifera]
          Length = 762

 Score = 75.1 bits (183), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 89/372 (23%), Positives = 151/372 (40%), Gaps = 49/372 (13%)

Query: 87  CIPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRR 146
           C+P    N + YN L+ A    G I  +   +K M   G   + + +N +I      G  
Sbjct: 245 CLP----NVVTYNTLIDAYCKMGRIDEAFGLLKSMSSKGMQPNLISYNVIINGLCREGSM 300

Query: 147 KTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCIL 206
           K    IL +M      P   T++ L+     + N    + ++++M R+ V P+ V+Y  L
Sbjct: 301 KEAWEILEEMGYKGFTPDEVTYNTLLNGYCKEGNFHQALVIHAEMVRNGVSPSVVTYTAL 360

Query: 207 ATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPN 266
             +   AR    A  + + +                             RI       PN
Sbjct: 361 INSMCKARNLNRAMEFFDQM-----------------------------RIRGL---RPN 388

Query: 267 VRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGL 326
            R  +Y   I+ F R   ++ A  +  EM       +   YN+ I  +C    +++A G+
Sbjct: 389 ER--TYTTLIDGFSRQGLLNEAYRILNEMTESGFSPSVVTYNAFIHGHCVLERMEEALGV 446

Query: 327 LKEMSMNGCKPNAITYRHLALG-CFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTL 385
           ++EM   G  P+ ++Y  +  G C K  L     +A ++  +++     +  +P   T  
Sbjct: 447 VQEMVEKGLAPDVVSYSTIISGFCRKGELD----RAFQMKQEMVE----KGVSPDAVTYS 498

Query: 386 SIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAY-VKAKINDP-NLLRRMILG 443
           S+I+   E   +  A +L +E+         F Y TLI AY V+  +N   +L   MI  
Sbjct: 499 SLIQGLCEMRRLTEACDLSQEMLDMGLPPDEFTYTTLINAYCVEGDLNKALHLHDEMIHK 558

Query: 444 GARPDAETYSLL 455
           G  PDA TYS+L
Sbjct: 559 GFLPDAVTYSVL 570



 Score = 72.8 bits (177), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 55/194 (28%), Positives = 94/194 (48%), Gaps = 13/194 (6%)

Query: 265 PNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKAS 324
           PNV +  Y + I  F  + ++ +    + EM+    L     YN++I  YCK G ID+A 
Sbjct: 212 PNVYT--YNILIRGFCSVGELQKGLGCFGEMERNGCLPNVVTYNTLIDAYCKMGRIDEAF 269

Query: 325 GLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKAL-ELGMKLITTKKVRSSTPWLET 383
           GLLK MS  G +PN I+Y  +  G  +   ++E ++ L E+G K  T  +V  +T     
Sbjct: 270 GLLKSMSSKGMQPNLISYNVIINGLCREGSMKEAWEILEEMGYKGFTPDEVTYNT----- 324

Query: 384 TLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAK-INDP-NLLRRMI 441
              ++  + ++G+   A  +  E+ +   +     Y  LI +  KA+ +N       +M 
Sbjct: 325 ---LLNGYCKEGNFHQALVIHAEMVRNGVSPSVVTYTALINSMCKARNLNRAMEFFDQMR 381

Query: 442 LGGARPDAETYSLL 455
           + G RP+  TY+ L
Sbjct: 382 IRGLRPNERTYTTL 395



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 80/384 (20%), Positives = 163/384 (42%), Gaps = 49/384 (12%)

Query: 80  QGEKLFCCIPKDYQ----NELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNR 135
            G  +F C+   Y     +  +++ +V +     +I  ++  +   +  G     L +N 
Sbjct: 123 SGSSIFQCLKDSYHVYNSSSAVFDLMVKSYSHLNMIDQAVNTINLAKSSGFMPGVLSYNS 182

Query: 136 LI--ILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKR 193
           ++  I+ S    + +   + R+M   +V+P+V T++IL++   +   ++  +  + +M+R
Sbjct: 183 VLDAIVRSRGSVKLSAEEVYREMIRSRVSPNVYTYNILIRGFCSVGELQKGLGCFGEMER 242

Query: 194 SEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKD 253
           +   PN V+Y  L  A+   ++  + E +   L KSM+                 +KG  
Sbjct: 243 NGCLPNVVTYNTLIDAY--CKMGRIDEAF--GLLKSMS-----------------SKGMQ 281

Query: 254 LERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISV 313
                      PN+   SY + I    R   +  A E+  EM           YN++++ 
Sbjct: 282 -----------PNL--ISYNVIINGLCREGSMKEAWEILEEMGYKGFTPDEVTYNTLLNG 328

Query: 314 YCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKK 373
           YCK G   +A  +  EM  NG  P+ +TY  L     K+       + L   M+     +
Sbjct: 329 YCKEGNFHQALVIHAEMVRNGVSPSVVTYTALINSMCKA-------RNLNRAMEFFDQMR 381

Query: 374 VRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAY-VKAKIN 432
           +R   P   T  ++I+ F+ +G +  A  +  E+ ++ ++     YN  I  + V  ++ 
Sbjct: 382 IRGLRPNERTYTTLIDGFSRQGLLNEAYRILNEMTESGFSPSVVTYNAFIHGHCVLERME 441

Query: 433 DP-NLLRRMILGGARPDAETYSLL 455
           +   +++ M+  G  PD  +YS +
Sbjct: 442 EALGVVQEMVEKGLAPDVVSYSTI 465



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 70/279 (25%), Positives = 114/279 (40%), Gaps = 32/279 (11%)

Query: 202 SYCILATAHAVAR--LYTVAETYVEALEKSMTGNNWSTL------------------DVL 241
           S+C   + H + R  LY  A+T  + L  S +  + S++                  D++
Sbjct: 89  SHCKCLSLHILTRFKLYKTAQTLAQELALSASDPSGSSIFQCLKDSYHVYNSSSAVFDLM 148

Query: 242 IILYGYL---AKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSV 298
           +  Y +L    +  +   +  +   +P V S + VL      R +    AEE++ EM   
Sbjct: 149 VKSYSHLNMIDQAVNTINLAKSSGFMPGVLSYNSVLDAIVRSRGSVKLSAEEVYREMIRS 208

Query: 299 KQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEG 358
           +       YN +I  +C  G + K  G   EM  NGC PN +TY  L     K   ++E 
Sbjct: 209 RVSPNVYTYNILIRGFCSVGELQKGLGCFGEMERNGCLPNVVTYNTLIDAYCKMGRIDEA 268

Query: 359 FKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFV 418
           F  L    K +++K ++   P L +   II     +G +  A  + EE+    +T     
Sbjct: 269 FGLL----KSMSSKGMQ---PNLISYNVIINGLCREGSMKEAWEILEEMGYKGFTPDEVT 321

Query: 419 YNTLIKAYVKAKINDPNLL--RRMILGGARPDAETYSLL 455
           YNTL+  Y K       L+    M+  G  P   TY+ L
Sbjct: 322 YNTLLNGYCKEGNFHQALVIHAEMVRNGVSPSVVTYTAL 360



 Score = 59.3 bits (142), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 92/427 (21%), Positives = 163/427 (38%), Gaps = 95/427 (22%)

Query: 94  NELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNIL 153
           N + YN ++     +G +K + E +++M   G +   + +N L+      G       I 
Sbjct: 283 NLISYNVIINGLCREGSMKEAWEILEEMGYKGFTPDEVTYNTLLNGYCKEGNFHQALVIH 342

Query: 154 RQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVA 213
            +M  + V+P V T+  L+       N+   M+ +  M+   + PNE +Y  L      +
Sbjct: 343 AEMVRNGVSPSVVTYTALINSMCKARNLNRAMEFFDQMRIRGLRPNERTYTTLIDG--FS 400

Query: 214 RLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQEL------PNV 267
           R   + E Y    E + +G + S +     ++G+    + +E     VQE+      P+V
Sbjct: 401 RQGLLNEAYRILNEMTESGFSPSVVTYNAFIHGHCVLER-MEEALGVVQEMVEKGLAPDV 459

Query: 268 RSKSYVLAIEAFGRIAQVSRAEELWLEM----------------QSVKQLKATEQ----- 306
            S S +  I  F R  ++ RA ++  EM                Q + +++   +     
Sbjct: 460 VSYSTI--ISGFCRKGELDRAFQMKQEMVEKGVSPDAVTYSSLIQGLCEMRRLTEACDLS 517

Query: 307 --------------YNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKS 352
                         Y ++I+ YC  G ++KA  L  EM   G  P+A+TY  L  G  K 
Sbjct: 518 QEMLDMGLPPDEFTYTTLINAYCVEGDLNKALHLHDEMIHKGFLPDAVTYSVLINGLNKQ 577

Query: 353 NLVEEGFKALELGMKLITTKKVRSSTPW-----------LETTLSIIEIFAEKGDVGNAE 401
               E  + L    KLI  + V S   +            ++ +++I+ F  KG +  A+
Sbjct: 578 ARTREAKRLL---FKLIYEESVPSDVTYDTLIENCSNIEFKSVVALIKGFCMKGLMHEAD 634

Query: 402 NLFEELKKANYTKYTFVYN-----------------------------------TLIKAY 426
            +FE + + N+     VYN                                   TLIKA 
Sbjct: 635 RVFESMVERNHKPGEAVYNVIIHGHCRGGNLPKAFNLYKEMIHSGFVPHTVTVITLIKAL 694

Query: 427 VKAKIND 433
            K  +N+
Sbjct: 695 FKEGMNE 701



 Score = 43.5 bits (101), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 59/315 (18%), Positives = 114/315 (36%), Gaps = 51/315 (16%)

Query: 94  NELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNIL 153
           NE  Y  L+     +G++  +   + +M   G S S + +N  I  +    R +    ++
Sbjct: 388 NERTYTTLIDGFSRQGLLNEAYRILNEMTESGFSPSVVTYNAFIHGHCVLERMEEALGVV 447

Query: 154 RQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHA-V 212
           ++M    +AP V ++  ++        ++   ++  +M    V P+ V+Y  L      +
Sbjct: 448 QEMVEKGLAPDVVSYSTIISGFCRKGELDRAFQMKQEMVEKGVSPDAVTYSSLIQGLCEM 507

Query: 213 ARLYTVAETYVEALEKSMTGNNWS----------------------------------TL 238
            RL    +   E L+  +  + ++                                  T 
Sbjct: 508 RRLTEACDLSQEMLDMGLPPDEFTYTTLINAYCVEGDLNKALHLHDEMIHKGFLPDAVTY 567

Query: 239 DVLIILYGYLAKGKDLERIW----------------ATVQELPNVRSKSYVLAIEAFGRI 282
            VLI      A+ ++ +R+                   ++   N+  KS V  I+ F   
Sbjct: 568 SVLINGLNKQARTREAKRLLFKLIYEESVPSDVTYDTLIENCSNIEFKSVVALIKGFCMK 627

Query: 283 AQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITY 342
             +  A+ ++  M           YN +I  +C+ G + KA  L KEM  +G  P+ +T 
Sbjct: 628 GLMHEADRVFESMVERNHKPGEAVYNVIIHGHCRGGNLPKAFNLYKEMIHSGFVPHTVTV 687

Query: 343 RHLALGCFKSNLVEE 357
             L    FK  + EE
Sbjct: 688 ITLIKALFKEGMNEE 702


>gi|26449475|dbj|BAC41864.1| unknown protein [Arabidopsis thaliana]
 gi|29028966|gb|AAO64862.1| At5g25630 [Arabidopsis thaliana]
          Length = 574

 Score = 75.1 bits (183), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 83/376 (22%), Positives = 168/376 (44%), Gaps = 22/376 (5%)

Query: 94  NELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLII---LNSSPGRRKTIP 150
           + + +N ++ A  + G ++ +++ + KM+ LG + +   +N LI    +   P R   + 
Sbjct: 114 DSIFFNAVINAFSESGNMEDAVQALLKMKELGLNPTTSTYNTLIKGYGIAGKPERSSELL 173

Query: 151 NILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAH 210
           +++ +     V P++ TF++L++       +E   +V   M+   V P+ V+Y  +AT +
Sbjct: 174 DLMLEEGNVDVGPNIRTFNVLVQAWCKKKKVEEAWEVVKKMEECGVRPDTVTYNTIATCY 233

Query: 211 AVARLYTVAETYV--EALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVR 268
                   AE+ V  + + K     N  T  +++  Y    + +D  R    V+ +  +R
Sbjct: 234 VQKGETVRAESEVVEKMVMKEKAKPNGRTCGIVVGGYCREGRVRDGLRF---VRRMKEMR 290

Query: 269 SKSYVLA----IEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKAS 324
            ++ ++     I  F  +      +E+   M+          Y++V++ +   G+++KA+
Sbjct: 291 VEANLVVFNSLINGFVEVMDRDGIDEVLTLMKECNVKADVITYSTVMNAWSSAGYMEKAA 350

Query: 325 GLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETT 384
            + KEM   G KP+A  Y  LA G  ++   +   KA EL   LI       S P +   
Sbjct: 351 QVFKEMVKAGVKPDAHAYSILAKGYVRAKGPK---KAEELLETLIV-----ESRPNVVIF 402

Query: 385 LSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAY--VKAKINDPNLLRRMIL 442
            ++I  +   G + +A  +F ++ K   +     + TL+  Y  VK       +L+ M  
Sbjct: 403 TTVISGWCSNGSMDDAMRVFNKMCKFGVSPNIKTFETLMWGYLEVKQPWKAEEVLQMMRG 462

Query: 443 GGARPDAETYSLLKLA 458
            G +P+  T+ LL  A
Sbjct: 463 CGVKPENSTFLLLAEA 478


>gi|125561476|gb|EAZ06924.1| hypothetical protein OsI_29163 [Oryza sativa Indica Group]
          Length = 687

 Score = 75.1 bits (183), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 76/368 (20%), Positives = 147/368 (39%), Gaps = 51/368 (13%)

Query: 94  NELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNIL 153
           N + YN ++   +  G ++       +M   G   + + +N L+      GR      +L
Sbjct: 230 NHITYNTMIDGHIKGGDLEAGFSLRDQMVCHGLKPNAITYNVLLSGLCRAGRMGETSALL 289

Query: 154 RQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVA 213
            +M + K+ P   T+ IL    + + + + ++ ++    ++ V   + +  IL       
Sbjct: 290 DEMASQKMVPDGFTYSILFDGLSRNGDSKAMLSLFGKSLKNGVTIGDYTCSILLNGLCKD 349

Query: 214 RLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSK--- 270
              ++AE  +++L  +         + LI   GY   G +LE  ++T  ++ +   K   
Sbjct: 350 GKVSIAEEVLQSLVNAGLVPTRVIYNTLI--NGYCQTG-ELEGAFSTFGQMKSRHIKPDH 406

Query: 271 -SYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKE 329
            +Y   I    +  +++ A++L +EMQ        E +N++I  Y + G ++K   +L E
Sbjct: 407 ITYNALINGLCKAERITNAQDLLMEMQDNGVNPTVETFNTLIDAYGRTGQLEKCFIVLSE 466

Query: 330 MSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIE 389
           M  NG KPN ++Y                                           SI+ 
Sbjct: 467 MQENGLKPNVVSYG------------------------------------------SIVN 484

Query: 390 IFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKINDPN--LLRRMILGGARP 447
            F + G +  A  + +++   +      VYN +I AYV+   ND    L+ +M   G  P
Sbjct: 485 AFCKNGKIPEAVAILDDMFHKDVLPNAQVYNAIIDAYVEHGPNDQAFILVEKMKSNGISP 544

Query: 448 DAETYSLL 455
              TY+LL
Sbjct: 545 SIVTYNLL 552



 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 74/383 (19%), Positives = 151/383 (39%), Gaps = 59/383 (15%)

Query: 88  IPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRK 147
           +P  +   +L++ L      K ++ L  + +K    +G     ++ N L       G+  
Sbjct: 298 VPDGFTYSILFDGLSRNGDSKAMLSLFGKSLKNGVTIGDYTCSILLNGLC----KDGKVS 353

Query: 148 TIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILA 207
               +L+ +    + P    ++ L+        +EG    +  MK   ++P+ ++Y  L 
Sbjct: 354 IAEEVLQSLVNAGLVPTRVIYNTLINGYCQTGELEGAFSTFGQMKSRHIKPDHITYNALI 413

Query: 208 TAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQEL--- 264
                A   T A+  +  ++ +       T + LI  YG   +   LE+ +  + E+   
Sbjct: 414 NGLCKAERITNAQDLLMEMQDNGVNPTVETFNTLIDAYGRTGQ---LEKCFIVLSEMQEN 470

Query: 265 ---PNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFID 321
              PNV   SY   + AF +  ++  A  +  +M     L   + YN++I  Y ++G  D
Sbjct: 471 GLKPNV--VSYGSIVNAFCKNGKIPEAVAILDDMFHKDVLPNAQVYNAIIDAYVEHGPND 528

Query: 322 KASGLLKEMSMNGCKPNAITYRHLALG--------------------------------- 348
           +A  L+++M  NG  P+ +TY  L  G                                 
Sbjct: 529 QAFILVEKMKSNGISPSIVTYNLLIKGLCNQSQISEAEEIINSLSNHRLIPDAVSYNTLI 588

Query: 349 ---CFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFE 405
              C++ N+     KAL+L  ++     ++S+   + T   +I      G +   E L++
Sbjct: 589 SACCYRGNI----DKALDLQQRM-HKYGIKST---VRTYHQLISGLGGAGRLIEMEYLYQ 640

Query: 406 ELKKANYTKYTFVYNTLIKAYVK 428
           ++ + N      ++N +++AY K
Sbjct: 641 KMMQNNVVPSNAIHNIMVEAYSK 663



 Score = 49.7 bits (117), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 48/192 (25%), Positives = 75/192 (39%), Gaps = 28/192 (14%)

Query: 265 PNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKAS 324
           P   + SY + I    R  +   A E++ EM     L     YN++I  + K G ++   
Sbjct: 192 PPPNAFSYNVVIAGMWRAGRGGDAVEVFDEMTERAVLPNHITYNTMIDGHIKGGDLEAGF 251

Query: 325 GLLKEMSMNGCKPNAITYRHLALGCFKSN----------------LVEEGFKALEL---- 364
            L  +M  +G KPNAITY  L  G  ++                 +V +GF    L    
Sbjct: 252 SLRDQMVCHGLKPNAITYNVLLSGLCRAGRMGETSALLDEMASQKMVPDGFTYSILFDGL 311

Query: 365 -------GMKLITTKKVRSSTPWLETTLSI-IEIFAEKGDVGNAENLFEELKKANYTKYT 416
                   M  +  K +++     + T SI +    + G V  AE + + L  A      
Sbjct: 312 SRNGDSKAMLSLFGKSLKNGVTIGDYTCSILLNGLCKDGKVSIAEEVLQSLVNAGLVPTR 371

Query: 417 FVYNTLIKAYVK 428
            +YNTLI  Y +
Sbjct: 372 VIYNTLINGYCQ 383


>gi|242050202|ref|XP_002462845.1| hypothetical protein SORBIDRAFT_02g033010 [Sorghum bicolor]
 gi|241926222|gb|EER99366.1| hypothetical protein SORBIDRAFT_02g033010 [Sorghum bicolor]
          Length = 798

 Score = 75.1 bits (183), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 81/360 (22%), Positives = 145/360 (40%), Gaps = 20/360 (5%)

Query: 89  PKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKT 148
           P+  +  + YN L+      G +K +L+    M   G       FN LI +    G    
Sbjct: 179 PRKPKLVVTYNTLIDLYGKAGRLKNALDMFLDMPAHGVMPDTYTFNTLINIFGLSGNSAQ 238

Query: 149 IPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILAT 208
              +   M    V P   T++++M + A+  ++E ++K Y  + ++ + P+ VSY IL  
Sbjct: 239 AEVLFASMMVRGVKPDTKTYNVMMTVFASIGDLERVLKYYYQIGKACLHPDAVSYRILLQ 298

Query: 209 AHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVR 268
                ++    E  +E +  S    +  +L +++ +Y  L    +    +        + 
Sbjct: 299 LLCERKMAHEVEDLIEGILSSGCSVHEQSLPIVMKMYVDLGLLDEAIAFFERHCRGKGIS 358

Query: 269 SKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLK 328
           SK++   ++AF        AE ++   + V   K   +YN +I  Y +    D+ S LL+
Sbjct: 359 SKNFSAIMDAFAEKGLWEEAEHIFCSERGVGNEKDIVEYNVMIKAYGQAKQYDRVSSLLE 418

Query: 329 EMSMNGCKPNAITYRHL----ALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETT 384
            M  +G   +  TY  L    ++G F                KL+   K     P  ET 
Sbjct: 419 SMEESGVSSDECTYNSLIQMFSVGGFPHR-----------AKKLLGKMKDAGFEPKCETY 467

Query: 385 LSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAY-----VKAKINDPNLLRR 439
            +II  ++    V  A +LF E+K +       VY  LI  +     VK  ++  NLL +
Sbjct: 468 SAIIRSYSCHCLVPEAIDLFNEMKTSGVEPNVIVYGILIDMFAETGNVKEALHYSNLLEQ 527



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 73/342 (21%), Positives = 138/342 (40%), Gaps = 24/342 (7%)

Query: 118 MKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEAN 177
           ++ M   G S     +N LI + S  G       +L +MK     P   T+  +++  + 
Sbjct: 417 LESMEESGVSSDECTYNSLIQMFSVGGFPHRAKKLLGKMKDAGFEPKCETYSAIIRSYSC 476

Query: 178 DHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWST 237
              +   + ++++MK S VEPN + Y IL    A       A  Y   LE+S    N   
Sbjct: 477 HCLVPEAIDLFNEMKTSGVEPNVIVYGILIDMFAETGNVKEALHYSNLLEQSGISPNHIV 536

Query: 238 LDVLIILYGYLAKGKDLERIWATVQEL---PNVRSKSYVLAIEAFGRIAQVSRAEELWLE 294
           L  LI  Y      K+ + +++ + ++   P++ + + +L +  + ++  V+ A+E++  
Sbjct: 537 LTSLIKAYSKFNSWKEAQDLYSRMNDMDGGPDIIASNAMLNL--YAKLEMVTEAKEIF-- 592

Query: 295 MQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKE---MSMNGCKPNAITYRHLALGCFK 351
               + L+     ++V   Y    ++ K+ GLL+E   ++    KP  ++       C  
Sbjct: 593 ----ESLRGNSCADAV--SYTTMAYLYKSMGLLRESIRITHKLQKPGLLS------DCAS 640

Query: 352 SNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKAN 411
            N V      LE+  K++  +   +          +  +F+  G    A  + E++    
Sbjct: 641 CNAVMALRATLEIVQKVLQLESAYNDGKKSAKQAIVAFLFSIAGMHAAALEICEKMLMPQ 700

Query: 412 YTKYTFVYNTLIKAYVK-AKINDP-NLLRRMILGGARPDAET 451
            T     YN   K Y    K+     L  RM   G +PD  T
Sbjct: 701 LTMDACAYNVCFKVYASCGKVEKAFGLFMRMRDLGLKPDTST 742


>gi|326510087|dbj|BAJ87260.1| predicted protein [Hordeum vulgare subsp. vulgare]
 gi|326520816|dbj|BAJ92771.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 1092

 Score = 75.1 bits (183), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 80/345 (23%), Positives = 138/345 (40%), Gaps = 20/345 (5%)

Query: 116  EYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIE 175
            E +KK   LG S+    +N LI              +  +MK     P   T+H+++   
Sbjct: 752  ELVKKFENLGVSLKTGSYNALICGLVDEDLIDIAEELFSEMKRLGCDPDEFTYHLILDAM 811

Query: 176  ANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVA-ETYVEALEKSMTGNN 234
                 IE ++K+  +M     +   V+Y  + +    +++   A   Y + + +   G +
Sbjct: 812  GKSMRIEDMLKIQEEMHNKGYKSTYVTYNTIISGLVKSKMLDEAINLYYQLMSE---GFS 868

Query: 235  WSTLDVLIILYGYLAKG--KDLERIWATVQEL---PNVRSKSYVLAIEAFGRIAQVSRAE 289
             +      +L G L  G  +D E ++  + E    PN     Y + +  +       +  
Sbjct: 869  PTPCTYGPLLDGLLKDGNIEDAEALFDEMLECGCEPNC--AIYNILLNGYRIAGDTEKVC 926

Query: 290  ELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGC 349
            EL+  M         + Y  VI   C +G ++      K+++  G +P+ ITY  L  G 
Sbjct: 927  ELFESMVEQGMNPDIKSYTVVIDTLCADGRLNDGLSYFKQLTDMGLEPDLITYNLLIHGL 986

Query: 350  FKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKK 409
             KS  +EE        + L    + +   P L T  S+I    + G    A  ++EEL  
Sbjct: 987  GKSGRLEEA-------LSLYNDMEKKGIAPNLYTYNSLILYLGKAGKAAEAGKMYEELLA 1039

Query: 410  ANYTKYTFVYNTLIKAY--VKAKINDPNLLRRMILGGARPDAETY 452
              +    F YN LI+ Y    +  N      RMI+GG RP++ TY
Sbjct: 1040 KGWKPNVFTYNALIRGYSVSGSPENAFAAYGRMIVGGCRPNSSTY 1084



 Score = 73.2 bits (178), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 79/358 (22%), Positives = 149/358 (41%), Gaps = 10/358 (2%)

Query: 94  NELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNIL 153
           N   YN L+   +  G  + +++  K M   G   +   ++ L++        +T+  +L
Sbjct: 170 NAYTYNGLIYFLVKSGFDREAMDVYKAMAADGVVPTVRTYSVLMLAFGKRRDAETVVGLL 229

Query: 154 RQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVA 213
            +M+A  V P+V ++ I +++      +E   ++   M+    +P+ V+  +L      A
Sbjct: 230 GEMEARGVRPNVYSYTICIRVLGQAGRLEEAYRILRKMEEEGCKPDVVTNTVLIQILCDA 289

Query: 214 RLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQ-ELPNVRSKSY 272
                A+     ++ S    +  T   L+   G     + +  IW  ++ +  N    SY
Sbjct: 290 GRLADAKDVFWKMKASDQKPDRVTYITLLDKCGDSGDSRSVSEIWNALKADGYNDNVVSY 349

Query: 273 VLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSM 332
             A++A  ++ +V  A +++ EM+    +     YNS+IS + K    ++A  L   M++
Sbjct: 350 TAAVDALCQVGRVDEALDVFDEMKQKGIIPQQYSYNSLISGFLKADRFNRALELFNHMNI 409

Query: 333 NGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFA 392
           +G  PN  T+        KS    E  KAL    K     K +   P +    +++   A
Sbjct: 410 HGPTPNGYTHVLFINYHGKSG---ESLKAL----KRYELMKSKGIVPDVVAGNAVLYGLA 462

Query: 393 EKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKINDP--NLLRRMILGGARPD 448
           + G +G A+ +F ELK    +     Y  +IK   KA   D    +   MI     PD
Sbjct: 463 KTGRLGMAKRVFHELKAMGISPDNITYTMMIKCCSKASNADEAMKIFAEMIENRCAPD 520



 Score = 62.4 bits (150), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 67/313 (21%), Positives = 133/313 (42%), Gaps = 21/313 (6%)

Query: 88  IPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRK 147
           IP+ Y     YN+L+   L       +LE    M +  H  +   +  ++ +N      +
Sbjct: 378 IPQQYS----YNSLISGFLKADRFNRALELFNHMNI--HGPTPNGYTHVLFINYHGKSGE 431

Query: 148 TIPNILRQ--MKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCI 205
           ++  + R   MK+  + P V   + ++   A    +    +V+ ++K   + P+ ++Y +
Sbjct: 432 SLKALKRYELMKSKGIVPDVVAGNAVLYGLAKTGRLGMAKRVFHELKAMGISPDNITYTM 491

Query: 206 LATAHAVARLYTVA-ETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQEL 264
           +    + A     A + + E +E     +  +   ++ +LY    +G +  +I+  ++E+
Sbjct: 492 MIKCCSKASNADEAMKIFAEMIENRCAPDVLAMNSLIDMLY-KAGRGNEAWKIFYELKEM 550

Query: 265 PNVRSK--SYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDK 322
            N+     +Y   +   GR  +V    +L   M S         YN+V+   CKNG ++ 
Sbjct: 551 -NLEPTDCTYNTLLAGLGREGKVKEVMQLLEGMNSNSFPPNIITYNTVLDCLCKNGEVNY 609

Query: 323 ASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLE 382
           A  +L  M+MNGC P+  +Y  +  G  K + ++E F            KKV +  P   
Sbjct: 610 ALDMLYSMTMNGCMPDLSSYNTVMYGLVKEDRLDEAF------WMFCQMKKVLA--PDYA 661

Query: 383 TTLSIIEIFAEKG 395
           T  +I+  F   G
Sbjct: 662 TVCTILPSFVRSG 674



 Score = 56.6 bits (135), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 83/354 (23%), Positives = 140/354 (39%), Gaps = 19/354 (5%)

Query: 36   LRKLQLNKRALEVMEWV--IRERPYRPKELDYSYLLEFTIKNHGISQGEKLFC------C 87
            +R L  +K AL   E V          K   Y+ L+   +    I   E+LF       C
Sbjct: 738  IRHLCKHKEALAAHELVKKFENLGVSLKTGSYNALICGLVDEDLIDIAEELFSEMKRLGC 797

Query: 88   IPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRK 147
             P ++   L+ + +  +   + ++K+  E   K    G+  +Y+ +N +I          
Sbjct: 798  DPDEFTYHLILDAMGKSMRIEDMLKIQEEMHNK----GYKSTYVTYNTIISGLVKSKMLD 853

Query: 148  TIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILA 207
               N+  Q+ ++  +P   T+  L+     D NIE    ++ +M     EPN   Y IL 
Sbjct: 854  EAINLYYQLMSEGFSPTPCTYGPLLDGLLKDGNIEDAEALFDEMLECGCEPNCAIYNILL 913

Query: 208  TAHAVA-RLYTVAETYVEALEKSMTGNNWSTLDVLIILY--GYLAKGKDLERIWATVQEL 264
              + +A     V E +   +E+ M  +  S   V+  L   G L  G    +    +   
Sbjct: 914  NGYRIAGDTEKVCELFESMVEQGMNPDIKSYTVVIDTLCADGRLNDGLSYFKQLTDMGLE 973

Query: 265  PNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKAS 324
            P++   +Y L I   G+  ++  A  L+ +M+          YNS+I    K G   +A 
Sbjct: 974  PDL--ITYNLLIHGLGKSGRLEEALSLYNDMEKKGIAPNLYTYNSLILYLGKAGKAAEAG 1031

Query: 325  GLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSST 378
             + +E+   G KPN  TY  L  G   S   E  F A   G  ++   +  SST
Sbjct: 1032 KMYEELLAKGWKPNVFTYNALIRGYSVSGSPENAFAA--YGRMIVGGCRPNSST 1083



 Score = 53.5 bits (127), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 66/313 (21%), Positives = 121/313 (38%), Gaps = 16/313 (5%)

Query: 118 MKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEAN 177
           ++KM   G     +    LI +    GR     ++  +MKA    P   T+  L+    +
Sbjct: 264 LRKMEEEGCKPDVVTNTVLIQILCDAGRLADAKDVFWKMKASDQKPDRVTYITLLDKCGD 323

Query: 178 DHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHA-VARLYTVAETYVEALEKSMTGNNWS 236
             +   + ++++ +K      N VSY     A   V R+    + + E  +K +    +S
Sbjct: 324 SGDSRSVSEIWNALKADGYNDNVVSYTAAVDALCQVGRVDEALDVFDEMKQKGIIPQQYS 383

Query: 237 TLDVLIILYGYLAKGKDLERIWATVQEL----PNVRSKSYVLAIEAFGRIAQVSRAEELW 292
                 ++ G+L K     R       +    P     ++VL I   G+  +  +A + +
Sbjct: 384 YNS---LISGFL-KADRFNRALELFNHMNIHGPTPNGYTHVLFINYHGKSGESLKALKRY 439

Query: 293 LEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKS 352
             M+S   +      N+V+    K G +  A  +  E+   G  P+ ITY  +   C K+
Sbjct: 440 ELMKSKGIVPDVVAGNAVLYGLAKTGRLGMAKRVFHELKAMGISPDNITYTMMIKCCSKA 499

Query: 353 NLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANY 412
           +  +E        MK+          P +    S+I++  + G    A  +F ELK+ N 
Sbjct: 500 SNADEA-------MKIFAEMIENRCAPDVLAMNSLIDMLYKAGRGNEAWKIFYELKEMNL 552

Query: 413 TKYTFVYNTLIKA 425
                 YNTL+  
Sbjct: 553 EPTDCTYNTLLAG 565



 Score = 49.7 bits (117), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 77/404 (19%), Positives = 160/404 (39%), Gaps = 55/404 (13%)

Query: 95  ELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILR 154
           +  YN L+     +G +K  ++ ++ M       + + +N ++      G      ++L 
Sbjct: 556 DCTYNTLLAGLGREGKVKEVMQLLEGMNSNSFPPNIITYNTVLDCLCKNGEVNYALDMLY 615

Query: 155 QMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVA- 213
            M  +   P +S+++ +M     +  ++    ++  MK+  + P+  + C +  +   + 
Sbjct: 616 SMTMNGCMPDLSSYNTVMYGLVKEDRLDEAFWMFCQMKKV-LAPDYATVCTILPSFVRSG 674

Query: 214 ----RLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRS 269
                L+TV E  ++   K    +  S ++ ++       K    E+   +++   N+ S
Sbjct: 675 LMKEALHTVREYILQPDSKVDRSSVHSLMEGIL-------KRDGTEK---SIEFAENIAS 724

Query: 270 KSYVLA-------IEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDK 322
              +L        I    +  +   A EL  + +++     T  YN++I        ID 
Sbjct: 725 SGLLLDDLFLSPIIRHLCKHKEALAAHELVKKFENLGVSLKTGSYNALICGLVDEDLIDI 784

Query: 323 ASGLLKEMSMNGCKPNAITYRHLALGCF-KSNLVEE-----------GFKALELGMKLIT 370
           A  L  EM   GC P+  TY HL L    KS  +E+           G+K+  +    I 
Sbjct: 785 AEELFSEMKRLGCDPDEFTY-HLILDAMGKSMRIEDMLKIQEEMHNKGYKSTYVTYNTII 843

Query: 371 TKKVRSS-----------------TPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYT 413
           +  V+S                  +P   T   +++   + G++ +AE LF+E+ +    
Sbjct: 844 SGLVKSKMLDEAINLYYQLMSEGFSPTPCTYGPLLDGLLKDGNIEDAEALFDEMLECGCE 903

Query: 414 KYTFVYNTLIKAYVKAKINDP--NLLRRMILGGARPDAETYSLL 455
               +YN L+  Y  A   +    L   M+  G  PD ++Y+++
Sbjct: 904 PNCAIYNILLNGYRIAGDTEKVCELFESMVEQGMNPDIKSYTVV 947



 Score = 40.4 bits (93), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 45/198 (22%), Positives = 82/198 (41%), Gaps = 31/198 (15%)

Query: 271 SYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEM 330
           +Y L ++A G+  ++    ++  EM +         YN++IS   K+  +D+A  L  ++
Sbjct: 803 TYHLILDAMGKSMRIEDMLKIQEEMHNKGYKSTYVTYNTIISGLVKSKMLDEAINLYYQL 862

Query: 331 SMNGCKPNAITYRHLALGCFKSNLVEEG----FKALELGMK--------LITTKKVRSST 378
              G  P   TY  L  G  K   +E+      + LE G +        L+   ++   T
Sbjct: 863 MSEGFSPTPCTYGPLLDGLLKDGNIEDAEALFDEMLECGCEPNCAIYNILLNGYRIAGDT 922

Query: 379 PWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKINDP-NLL 437
                   + E+F         E++ E+    +   YT V +TL       ++ND  +  
Sbjct: 923 E------KVCELF---------ESMVEQGMNPDIKSYTVVIDTLC---ADGRLNDGLSYF 964

Query: 438 RRMILGGARPDAETYSLL 455
           +++   G  PD  TY+LL
Sbjct: 965 KQLTDMGLEPDLITYNLL 982


>gi|296089633|emb|CBI39452.3| unnamed protein product [Vitis vinifera]
          Length = 718

 Score = 75.1 bits (183), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 104/474 (21%), Positives = 195/474 (41%), Gaps = 30/474 (6%)

Query: 1   IERLPRGEPVGSAFQSWMREGFP-VHRGEIFHSINRLRKLQLNKRALEVMEWVIRERPYR 59
           + RL   EP     QS + E  P + +  +  ++  +R      +AL    WV   + + 
Sbjct: 69  MARLINTEPWSHELQSSLAELAPSLSKTTVLQTLQLIRT---PAKALHFFRWV-EAKGFT 124

Query: 60  PKELDYSYLLEFTIKNHGISQGEKLFCCIPKDYQNEL-----LYNNLVIACLDKGVIKLS 114
             E  Y  ++E   ++  ++        I K     +      +N+L+ +    G+ + S
Sbjct: 125 HNEQSYFLMIEILGRSRNLNAARNFVFSIEKKSGGAVKLGDRFFNSLIRSYGWAGLFQES 184

Query: 115 LEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQM-KADKVAPHVSTFHILMK 173
           ++  K M+ +G S S + FN L+ +    GR      +  +M     V P   TF+IL++
Sbjct: 185 IKVFKTMKEIGVSPSVVTFNSLLSIVLKRGRTSMAKQLFDEMLDTYGVTPDTYTFNILIR 244

Query: 174 IEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGN 233
               +  ++     + +M R + +P+ V+Y  L      A    +A   V+ + K     
Sbjct: 245 GFCMNSMVDEGFWFFKEMSRFKCDPDVVTYNTLVDGLCRAGKVKIAHNVVKGMVKKSPNL 304

Query: 234 NWSTLDVLIILYGYLAKGKDLERIWATVQEL------PNVRSKSYVLAIEAFGRIAQVSR 287
           + + +    ++ GY  K +D+    + + E+      PN    +Y   I+      ++ +
Sbjct: 305 SPNVVTYTTLIRGYCMK-QDMAEALSLLAEMVSRGLKPN--KITYNTLIQGLCEAQKLDK 361

Query: 288 AEELWLEMQSVKQ-LKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLA 346
            +E+   M      +  T   N++I  +C  G +++A  + ++MS    +P++ TY  L 
Sbjct: 362 IKEILEGMVGDGGFIPDTCTLNTLIKAHCTMGKLEEAFSVFEKMSELRVQPDSATYSVLV 421

Query: 347 LG-CFKSNL--VEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENL 403
              C + +    EE F   EL  K I    V    P +     + E     G    AE +
Sbjct: 422 RSLCQRGDFRRAEEFFD--ELAEKEILLHDV-GCKPLVAAYNPMFEYLCSNGKTKKAERV 478

Query: 404 FEELKKANYTKYTFVYNTLIKAYVKAKINDP--NLLRRMILGGARPDAETYSLL 455
           F +L K   T+    Y TLI  + +    +   +LL  M+     PDAETY L+
Sbjct: 479 FRQLMKRG-TQDPPSYKTLILGHCREGTPEAGFDLLVLMLRRDFVPDAETYGLM 531


>gi|302141714|emb|CBI18917.3| unnamed protein product [Vitis vinifera]
          Length = 496

 Score = 75.1 bits (183), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 65/278 (23%), Positives = 129/278 (46%), Gaps = 26/278 (9%)

Query: 188 YSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLI---IL 244
           ++ M+    +P+++++ ++ ++ +  R    A+++ ++L+           DV++   ++
Sbjct: 169 FNRMEDYGCKPDKIAFSVVISSLSKKRRAIEAQSFFDSLKDRFEP------DVVVYTSLV 222

Query: 245 YGYLAKG--KDLERIWATVQEL---PNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVK 299
           +G+   G   + ER++  ++     PNV +  Y + I+A  R  Q++RA +++ EM  V 
Sbjct: 223 HGWCRAGNISEAERVFGEMKMAGIQPNVYT--YSIVIDALCRSGQITRAHDVFSEMIDVG 280

Query: 300 QLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGF 359
                  +N+++ V+ K G  +K   +  +M   GC P+AITY  L     + + +EE  
Sbjct: 281 CDPNAITFNNLMRVHVKAGRTEKVLQVYNQMKRLGCPPDAITYNFLIESHCRDDNLEEAV 340

Query: 360 KALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVY 419
           K L   +K        S  P       I    ++ GDV +A  +F ++K       T  Y
Sbjct: 341 KILN-SVKKGCNLNASSFNP-------IFGCISKLGDVNSAHRMFAKMKDLKCRPNTVTY 392

Query: 420 NTLIKAYVKAKINDP--NLLRRMILGGARPDAETYSLL 455
           N L++ +   K  D    L + M      P+A TY +L
Sbjct: 393 NILMRMFADKKSTDMVLKLRKEMDENEIEPNANTYRVL 430



 Score = 55.1 bits (131), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 68/350 (19%), Positives = 141/350 (40%), Gaps = 42/350 (12%)

Query: 59  RPKELDYSYLLEFTIKNHGISQGEKLFCCIPKDYQNELL-YNNLVIACLDKGVIKLSLEY 117
           +P ++ +S ++    K     + +  F  +   ++ +++ Y +LV      G I  +   
Sbjct: 178 KPDKIAFSVVISSLSKKRRAIEAQSFFDSLKDRFEPDVVVYTSLVHGWCRAGNISEAERV 237

Query: 118 MKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEAN 177
             +M++ G   +   ++ +I      G+     ++  +M      P+  TF+ LM++   
Sbjct: 238 FGEMKMAGIQPNVYTYSIVIDALCRSGQITRAHDVFSEMIDVGCDPNAITFNNLMRVHVK 297

Query: 178 DHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWST 237
               E +++VY+ MKR    P+ ++Y  L  +H             + LE+++       
Sbjct: 298 AGRTEKVLQVYNQMKRLGCPPDAITYNFLIESHCRD----------DNLEEAV------- 340

Query: 238 LDVLIILYGYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQS 297
                             +I  +V++  N+ + S+        ++  V+ A  ++ +M+ 
Sbjct: 341 ------------------KILNSVKKGCNLNASSFNPIFGCISKLGDVNSAHRMFAKMKD 382

Query: 298 VKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEE 357
           +K    T  YN ++ ++      D    L KEM  N  +PNA TYR L +  F    +  
Sbjct: 383 LKCRPNTVTYNILMRMFADKKSTDMVLKLRKEMDENEIEPNANTYRVL-ISTFCG--IGH 439

Query: 358 GFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEEL 407
              A     ++I  K +R S P  E  L  +    + G +   E L E++
Sbjct: 440 WNNAYSFFKEMIEEKCLRPSLPVYEMVLQQLR---KAGQLKKHEELVEKM 486



 Score = 45.8 bits (107), Expect = 0.052,   Method: Compositional matrix adjust.
 Identities = 62/315 (19%), Positives = 122/315 (38%), Gaps = 47/315 (14%)

Query: 36  LRKLQLNKRALEVMEWV--IRERPYRPKELDYSYLLEFTIKNHGISQGEKLF--CCIPKD 91
           +  L   +RA+E   +   +++R + P  + Y+ L+    +   IS+ E++F    +   
Sbjct: 188 ISSLSKKRRAIEAQSFFDSLKDR-FEPDVVVYTSLVHGWCRAGNISEAERVFGEMKMAGI 246

Query: 92  YQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPN 151
             N   Y+ ++ A    G I  + +   +M  +G   + + FN L+ ++   GR + +  
Sbjct: 247 QPNVYTYSIVIDALCRSGQITRAHDVFSEMIDVGCDPNAITFNNLMRVHVKAGRTEKVLQ 306

Query: 152 ILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHA 211
           +  QMK     P   T++ L++    D N+E  +K+ + +K+          C L     
Sbjct: 307 VYNQMKRLGCPPDAITYNFLIESHCRDDNLEEAVKILNSVKKG---------CNL----- 352

Query: 212 VARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQEL---PNVR 268
                                 N S+ + +      L       R++A +++L   PN  
Sbjct: 353 ----------------------NASSFNPIFGCISKLGDVNSAHRMFAKMKDLKCRPN-- 388

Query: 269 SKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLK 328
           + +Y + +  F          +L  EM   +       Y  +IS +C  G  + A    K
Sbjct: 389 TVTYNILMRMFADKKSTDMVLKLRKEMDENEIEPNANTYRVLISTFCGIGHWNNAYSFFK 448

Query: 329 EMSMNGC-KPNAITY 342
           EM    C +P+   Y
Sbjct: 449 EMIEEKCLRPSLPVY 463


>gi|255661198|gb|ACU25768.1| pentatricopeptide repeat-containing protein [Priva cordifolia]
          Length = 426

 Score = 75.1 bits (183), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 77/322 (23%), Positives = 151/322 (46%), Gaps = 22/322 (6%)

Query: 98  YNNLVIACLDKGVIKLSLEYMKKM---RVLGHSISYLVFNRLIILNSSPGRRKTIPNILR 154
           Y+ L+     +G+   +L +++KM   RV G  + Y   + LI L+          +I  
Sbjct: 12  YSTLITYFGKEGLFDDALSWLQKMEQDRVRGDLVLY---SNLIELSRKLCDYSKAISIFS 68

Query: 155 QMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVAR 214
           ++K   + P +  ++ ++ +            + S+M+ + V P+ VSY  L T +   +
Sbjct: 69  RLKRSGIMPDLVVYNSMINVFGKAKLFREARSLISEMRTAGVMPDTVSYTALLTMYVENK 128

Query: 215 LYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQEL---PNVRSKS 271
            +  A +    + +     + +T +++I +YG L   K+ ++++ ++++L   PNV S +
Sbjct: 129 KFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWSMRKLGIEPNVVSYN 188

Query: 272 YVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMS 331
            +L +  +G       A  L+  MQ     +    YNS++ +Y K    +KA+ L++EM 
Sbjct: 189 TLLRV--YGDAELFGEAIHLFRLMQRKDIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQ 246

Query: 332 MNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTL--SIIE 389
             G +PNAITY         S ++    K  +L    I  +K+RSS   ++  L  ++I 
Sbjct: 247 SRGIEPNAITY---------STIISIWGKVGKLDRAAILFEKLRSSGIEIDQVLYQTMIV 297

Query: 390 IFAEKGDVGNAENLFEELKKAN 411
            +   G V +A+ L  ELK  +
Sbjct: 298 AYERAGLVSHAKRLLHELKTPD 319



 Score = 42.4 bits (98), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 32/125 (25%), Positives = 57/125 (45%), Gaps = 7/125 (5%)

Query: 307 YNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGM 366
           YNS+I+V+ K     +A  L+ EM   G  P+ ++Y  L        +  E  K LE   
Sbjct: 82  YNSMINVFGKAKLFREARSLISEMRTAGVMPDTVSYTALL------TMYVENKKFLEALS 135

Query: 367 KLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAY 426
                ++++     L T   +I+++ + G    A+ LF  ++K         YNTL++ Y
Sbjct: 136 VFAEMREIKCLLD-LTTCNIMIDVYGQLGMAKEADKLFWSMRKLGIEPNVVSYNTLLRVY 194

Query: 427 VKAKI 431
             A++
Sbjct: 195 GDAEL 199



 Score = 42.4 bits (98), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 54/305 (17%), Positives = 114/305 (37%), Gaps = 78/305 (25%)

Query: 153 LRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAV 212
           L++M+ D+V   +  +  L+++     +    + ++S +KRS + P+ V Y  +      
Sbjct: 32  LQKMEQDRVRGDLVLYSNLIELSRKLCDYSKAISIFSRLKRSGIMPDLVVYNSMINVFGK 91

Query: 213 ARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSKSY 272
           A+L+  A + +  +  +    +  +   L+ +Y                     V +K +
Sbjct: 92  AKLFREARSLISEMRTAGVMPDTVSYTALLTMY---------------------VENKKF 130

Query: 273 VLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSM 332
           + A+  F              EM+ +K L      N +I VY + G   +A  L   M  
Sbjct: 131 LEALSVFA-------------EMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWSMRK 177

Query: 333 NGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFA 392
            G +PN ++Y                                           +++ ++ 
Sbjct: 178 LGIEPNVVSYN------------------------------------------TLLRVYG 195

Query: 393 EKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKINDP--NLLRRMILGGARPDAE 450
           +    G A +LF  +++ +  +    YN+++  Y K   ++   NL++ M   G  P+A 
Sbjct: 196 DAELFGEAIHLFRLMQRKDIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQSRGIEPNAI 255

Query: 451 TYSLL 455
           TYS +
Sbjct: 256 TYSTI 260


>gi|255661172|gb|ACU25755.1| pentatricopeptide repeat-containing protein [Junellia seriphioides]
          Length = 426

 Score = 75.1 bits (183), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 74/322 (22%), Positives = 150/322 (46%), Gaps = 22/322 (6%)

Query: 98  YNNLVIACLDKGVIKLSLEYMKKM---RVLGHSISYLVFNRLIILNSSPGRRKTIPNILR 154
           Y+ L+     +G+   +L +++KM   RV G  + Y   + LI L+          +I  
Sbjct: 12  YSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLY---SNLIELSRKLCDYSKAISIFS 68

Query: 155 QMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVAR 214
           ++K  +  P +  ++ ++ +            + S+M+ + V PN  SY  L T +   +
Sbjct: 69  RLKRSRFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTASYSTLLTMYVENK 128

Query: 215 LYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQEL---PNVRSKS 271
            +  A +    + +     + +T +++I +YG L   K+ ++++  ++++   PNV S +
Sbjct: 129 KFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYN 188

Query: 272 YVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMS 331
            +L +  +G       A  L+  MQ     +    YNS++ +Y K    +KA+ L++EM 
Sbjct: 189 TLLRV--YGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQ 246

Query: 332 MNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTL--SIIE 389
             G +PN+ITY         S ++    K  +L    +  +K+RSS   ++  L  ++I 
Sbjct: 247 NRGIEPNSITY---------STIISIWGKVGKLDRAAMLFQKLRSSGVDIDQVLYQTMIV 297

Query: 390 IFAEKGDVGNAENLFEELKKAN 411
            +   G V +A+ L  ELK+ +
Sbjct: 298 AYERSGLVAHAKRLLHELKRPD 319



 Score = 42.0 bits (97), Expect = 0.73,   Method: Compositional matrix adjust.
 Identities = 36/156 (23%), Positives = 68/156 (43%), Gaps = 7/156 (4%)

Query: 276 IEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGC 335
           IE   ++   S+A  ++  ++  +       YN++I+V+ K     +A  L+ EM   G 
Sbjct: 51  IELSRKLCDYSKAISIFSRLKRSRFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGV 110

Query: 336 KPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKG 395
            PN  +Y  L        +  E  K LE        ++++     L T   +I+++ + G
Sbjct: 111 TPNTASYSTLL------TMYVENKKFLEALSVFAEMREIKCLLD-LTTCNIMIDVYGQLG 163

Query: 396 DVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKI 431
               A+ LF  ++K         YNTL++ Y  A++
Sbjct: 164 MAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAEL 199



 Score = 40.0 bits (92), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 32/126 (25%), Positives = 58/126 (46%), Gaps = 11/126 (8%)

Query: 307 YNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGM 366
           Y+++I+ + K G  D A   L++M  +    + + Y         SNL+E   K  +   
Sbjct: 12  YSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLY---------SNLIELSRKLCDYSK 62

Query: 367 KLITTKKVRSS--TPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIK 424
            +    +++ S  TP L    ++I +F +      A +L  E++ A  T  T  Y+TL+ 
Sbjct: 63  AISIFSRLKRSRFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTASYSTLLT 122

Query: 425 AYVKAK 430
            YV+ K
Sbjct: 123 MYVENK 128


>gi|326523953|dbj|BAJ96987.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 1092

 Score = 75.1 bits (183), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 80/345 (23%), Positives = 138/345 (40%), Gaps = 20/345 (5%)

Query: 116  EYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIE 175
            E +KK   LG S+    +N LI              +  +MK     P   T+H+++   
Sbjct: 752  ELVKKFENLGVSLKTGSYNALICGLVDEDLIDIAEELFSEMKRLGCDPDEFTYHLILDAM 811

Query: 176  ANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVA-ETYVEALEKSMTGNN 234
                 IE ++K+  +M     +   V+Y  + +    +++   A   Y + + +   G +
Sbjct: 812  GKSMRIEDMLKIQEEMHNKGYKSTYVTYNTIISGLVKSKMLDEAINLYYQLMSE---GFS 868

Query: 235  WSTLDVLIILYGYLAKG--KDLERIWATVQEL---PNVRSKSYVLAIEAFGRIAQVSRAE 289
             +      +L G L  G  +D E ++  + E    PN     Y + +  +       +  
Sbjct: 869  PTPCTYGPLLDGLLKDGNIEDAEALFDEMLECGCEPNC--AIYNILLNGYRIAGDTEKVC 926

Query: 290  ELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGC 349
            EL+  M         + Y  VI   C +G ++      K+++  G +P+ ITY  L  G 
Sbjct: 927  ELFESMVEQGMNPDIKSYTVVIDTLCADGRLNDGLSYFKQLTDMGLEPDLITYNLLIHGL 986

Query: 350  FKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKK 409
             KS  +EE        + L    + +   P L T  S+I    + G    A  ++EEL  
Sbjct: 987  GKSGRLEEA-------LSLYNDMEKKGIAPNLYTYNSLILYLGKAGKAAEAGKMYEELLA 1039

Query: 410  ANYTKYTFVYNTLIKAY--VKAKINDPNLLRRMILGGARPDAETY 452
              +    F YN LI+ Y    +  N      RMI+GG RP++ TY
Sbjct: 1040 KGWKPNVFTYNALIRGYSVSGSPENAFAAYGRMIVGGCRPNSSTY 1084



 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 79/358 (22%), Positives = 149/358 (41%), Gaps = 10/358 (2%)

Query: 94  NELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNIL 153
           N   YN L+   +  G  + +++  K M   G   +   ++ L++        +T+  +L
Sbjct: 170 NAYTYNGLIYFLVKSGFDREAMDVYKAMAADGVVPTVRTYSVLMLAFGKRRDAETVVGLL 229

Query: 154 RQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVA 213
            +M+A  V P+V ++ I +++      +E   ++   M+    +P+ V+  +L      A
Sbjct: 230 GEMEARGVRPNVYSYTICIRVLGQAGRLEEAYRILRKMEEEGCKPDVVTNTVLIQILCDA 289

Query: 214 RLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQ-ELPNVRSKSY 272
                A+     ++ S    +  T   L+   G     + +  IW  ++ +  N    SY
Sbjct: 290 GRLADAKDVFWKMKASDQKPDRVTYITLLDKCGDSGDSRSVSEIWNALKADGYNDNVVSY 349

Query: 273 VLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSM 332
             A++A  ++ +V  A +++ EM+    +     YNS+IS + K    ++A  L   M++
Sbjct: 350 TAAVDALCQVGRVDEALDVFDEMKQKGIIPQQYSYNSLISGFLKADRFNRALELFNHMNI 409

Query: 333 NGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFA 392
           +G  PN  T+        KS    E  KAL    K     K +   P +    +++   A
Sbjct: 410 HGPTPNGYTHVLFINYHGKSG---ESLKAL----KRYELMKSKGIVPDVVAGNAVLYGLA 462

Query: 393 EKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKINDP--NLLRRMILGGARPD 448
           + G +G A+ +F ELK    +     Y  +IK   KA   D    +   MI     PD
Sbjct: 463 KTGRLGMAKRVFHELKAMGISPDNITYTMMIKCCSKASNADEAMKIFAEMIENRCAPD 520



 Score = 61.6 bits (148), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 67/313 (21%), Positives = 132/313 (42%), Gaps = 21/313 (6%)

Query: 88  IPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRK 147
           IP+ Y     YN+L+   L       +LE    M +  H  +   +  ++ +N      +
Sbjct: 378 IPQQYS----YNSLISGFLKADRFNRALELFNHMNI--HGPTPNGYTHVLFINYHGKSGE 431

Query: 148 TIPNILRQ--MKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCI 205
           ++  + R   MK+  + P V   + ++   A    +    +V+ ++K   + P+ ++Y +
Sbjct: 432 SLKALKRYELMKSKGIVPDVVAGNAVLYGLAKTGRLGMAKRVFHELKAMGISPDNITYTM 491

Query: 206 LATAHAVARLYTVA-ETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQEL 264
           +    + A     A + + E +E     +  +   ++ +LY    +G +  +I+  ++E+
Sbjct: 492 MIKCCSKASNADEAMKIFAEMIENRCAPDVLAMNSLIDMLY-KAGRGNEAWKIFYELKEM 550

Query: 265 PNVRSK--SYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDK 322
            N+     +Y   +   GR  +V    +L   M S         YN+V+   CKNG ++ 
Sbjct: 551 -NLEPTDCTYNTLLAGLGREGKVKEVMQLLEGMNSNSFPPNIITYNTVLDCLCKNGEVNY 609

Query: 323 ASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLE 382
           A  +L  M+MNGC P+  +Y  +  G  K   ++E F            KKV +  P   
Sbjct: 610 ALDMLYSMTMNGCMPDLSSYNTVMYGLVKEGRLDEAF------WMFCQMKKVLA--PDYA 661

Query: 383 TTLSIIEIFAEKG 395
           T  +I+  F   G
Sbjct: 662 TVCTILPSFVRSG 674



 Score = 56.2 bits (134), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 75/323 (23%), Positives = 130/323 (40%), Gaps = 17/323 (5%)

Query: 65   YSYLLEFTIKNHGISQGEKLFC------CIPKDYQNELLYNNLVIACLDKGVIKLSLEYM 118
            Y+ L+   +    I   E+LF       C P ++   L+ + +  +   + ++K+  E  
Sbjct: 769  YNALICGLVDEDLIDIAEELFSEMKRLGCDPDEFTYHLILDAMGKSMRIEDMLKIQEEMH 828

Query: 119  KKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEAND 178
             K    G+  +Y+ +N +I             N+  Q+ ++  +P   T+  L+     D
Sbjct: 829  NK----GYKSTYVTYNTIISGLVKSKMLDEAINLYYQLMSEGFSPTPCTYGPLLDGLLKD 884

Query: 179  HNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVA-RLYTVAETYVEALEKSMTGNNWST 237
             NIE    ++ +M     EPN   Y IL   + +A     V E +   +E+ M  +  S 
Sbjct: 885  GNIEDAEALFDEMLECGCEPNCAIYNILLNGYRIAGDTEKVCELFESMVEQGMNPDIKSY 944

Query: 238  LDVLIILY--GYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEM 295
              V+  L   G L  G    +    +   P++   +Y L I   G+  ++  A  L+ +M
Sbjct: 945  TVVIDTLCADGRLNDGLSYFKQLTDMGLEPDL--ITYNLLIHGLGKSGRLEEALSLYNDM 1002

Query: 296  QSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLV 355
            +          YNS+I    K G   +A  + +E+   G KPN  TY  L  G   S   
Sbjct: 1003 EKKGIAPNLYTYNSLILYLGKAGKAAEAGKMYEELLAKGWKPNVFTYNALIRGYSVSGSP 1062

Query: 356  EEGFKALELGMKLITTKKVRSST 378
            E  F A   G  ++   +  SST
Sbjct: 1063 ENAFAA--YGRMIVGGCRPNSST 1083



 Score = 53.5 bits (127), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 66/313 (21%), Positives = 121/313 (38%), Gaps = 16/313 (5%)

Query: 118 MKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEAN 177
           ++KM   G     +    LI +    GR     ++  +MKA    P   T+  L+    +
Sbjct: 264 LRKMEEEGCKPDVVTNTVLIQILCDAGRLADAKDVFWKMKASDQKPDRVTYITLLDKCGD 323

Query: 178 DHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHA-VARLYTVAETYVEALEKSMTGNNWS 236
             +   + ++++ +K      N VSY     A   V R+    + + E  +K +    +S
Sbjct: 324 SGDSRSVSEIWNALKADGYNDNVVSYTAAVDALCQVGRVDEALDVFDEMKQKGIIPQQYS 383

Query: 237 TLDVLIILYGYLAKGKDLERIWATVQEL----PNVRSKSYVLAIEAFGRIAQVSRAEELW 292
                 ++ G+L K     R       +    P     ++VL I   G+  +  +A + +
Sbjct: 384 YNS---LISGFL-KADRFNRALELFNHMNIHGPTPNGYTHVLFINYHGKSGESLKALKRY 439

Query: 293 LEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKS 352
             M+S   +      N+V+    K G +  A  +  E+   G  P+ ITY  +   C K+
Sbjct: 440 ELMKSKGIVPDVVAGNAVLYGLAKTGRLGMAKRVFHELKAMGISPDNITYTMMIKCCSKA 499

Query: 353 NLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANY 412
           +  +E        MK+          P +    S+I++  + G    A  +F ELK+ N 
Sbjct: 500 SNADEA-------MKIFAEMIENRCAPDVLAMNSLIDMLYKAGRGNEAWKIFYELKEMNL 552

Query: 413 TKYTFVYNTLIKA 425
                 YNTL+  
Sbjct: 553 EPTDCTYNTLLAG 565



 Score = 51.6 bits (122), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 78/404 (19%), Positives = 161/404 (39%), Gaps = 55/404 (13%)

Query: 95  ELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILR 154
           +  YN L+     +G +K  ++ ++ M       + + +N ++      G      ++L 
Sbjct: 556 DCTYNTLLAGLGREGKVKEVMQLLEGMNSNSFPPNIITYNTVLDCLCKNGEVNYALDMLY 615

Query: 155 QMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVA- 213
            M  +   P +S+++ +M     +  ++    ++  MK+  + P+  + C +  +   + 
Sbjct: 616 SMTMNGCMPDLSSYNTVMYGLVKEGRLDEAFWMFCQMKKV-LAPDYATVCTILPSFVRSG 674

Query: 214 ----RLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRS 269
                L+TV E  ++   K    +  S ++ ++       K    E+   +++   N+ S
Sbjct: 675 LMKEALHTVREYILQPDSKVDRSSVHSLMEGIL-------KRDGTEK---SIEFAENIAS 724

Query: 270 KSYVLA-------IEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDK 322
              +L        I  F +  +   A EL  + +++     T  YN++I        ID 
Sbjct: 725 SGLLLDDLFLSPIIRHFCKHKEALAAHELVKKFENLGVSLKTGSYNALICGLVDEDLIDI 784

Query: 323 ASGLLKEMSMNGCKPNAITYRHLALGCF-KSNLVEE-----------GFKALELGMKLIT 370
           A  L  EM   GC P+  TY HL L    KS  +E+           G+K+  +    I 
Sbjct: 785 AEELFSEMKRLGCDPDEFTY-HLILDAMGKSMRIEDMLKIQEEMHNKGYKSTYVTYNTII 843

Query: 371 TKKVRSS-----------------TPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYT 413
           +  V+S                  +P   T   +++   + G++ +AE LF+E+ +    
Sbjct: 844 SGLVKSKMLDEAINLYYQLMSEGFSPTPCTYGPLLDGLLKDGNIEDAEALFDEMLECGCE 903

Query: 414 KYTFVYNTLIKAYVKAKINDP--NLLRRMILGGARPDAETYSLL 455
               +YN L+  Y  A   +    L   M+  G  PD ++Y+++
Sbjct: 904 PNCAIYNILLNGYRIAGDTEKVCELFESMVEQGMNPDIKSYTVV 947



 Score = 40.4 bits (93), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 45/198 (22%), Positives = 82/198 (41%), Gaps = 31/198 (15%)

Query: 271 SYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEM 330
           +Y L ++A G+  ++    ++  EM +         YN++IS   K+  +D+A  L  ++
Sbjct: 803 TYHLILDAMGKSMRIEDMLKIQEEMHNKGYKSTYVTYNTIISGLVKSKMLDEAINLYYQL 862

Query: 331 SMNGCKPNAITYRHLALGCFKSNLVEEG----FKALELGMK--------LITTKKVRSST 378
              G  P   TY  L  G  K   +E+      + LE G +        L+   ++   T
Sbjct: 863 MSEGFSPTPCTYGPLLDGLLKDGNIEDAEALFDEMLECGCEPNCAIYNILLNGYRIAGDT 922

Query: 379 PWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKINDP-NLL 437
                   + E+F         E++ E+    +   YT V +TL       ++ND  +  
Sbjct: 923 E------KVCELF---------ESMVEQGMNPDIKSYTVVIDTLC---ADGRLNDGLSYF 964

Query: 438 RRMILGGARPDAETYSLL 455
           +++   G  PD  TY+LL
Sbjct: 965 KQLTDMGLEPDLITYNLL 982


>gi|357504477|ref|XP_003622527.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355497542|gb|AES78745.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 721

 Score = 75.1 bits (183), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 88/380 (23%), Positives = 154/380 (40%), Gaps = 49/380 (12%)

Query: 36  LRKLQLNKRALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQGEKLFCCIPKDYQNE 95
           LR +++  +A     W I E+ +      Y  +LE   +   ++        I K    E
Sbjct: 92  LRHIKVPTKAFLFFNW-IHEKGFSHNPQTYFIMLEILGREKNLNIARNFLYSIEKRSNGE 150

Query: 96  L-----LYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIP 150
           +      +N+L+ +  + G+ K S++  + M+++G S   + FN ++++    GR     
Sbjct: 151 VKLEDRFFNSLIRSYGEAGLFKESVKLFENMKLIGVSPGVVTFNSVLLVLLKRGRTNMAK 210

Query: 151 NILRQM-KADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATA 209
            +  +M K   V P   T++IL++    +  ++     + +M   + +P+ V+Y  L   
Sbjct: 211 EVYDEMLKTYGVKPDTYTYNILIRGFCKNSMVDEGFYFFKEMTSFDCDPDVVTYNTLVDG 270

Query: 210 HAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRS 269
              A    VA   V  + K                     K KDL          P+V  
Sbjct: 271 LCRAGKIKVAHNLVNGMSK---------------------KCKDLS---------PDV-- 298

Query: 270 KSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKE 329
            +Y   I  + R  +V  A ++  EM           YN++I   C+    DK   +L++
Sbjct: 299 VTYTTLIRGYCRKQEVDEALDILEEMNGRGLKPNIVTYNTLIKGLCEAQKWDKMKEILEQ 358

Query: 330 MSMNGCK-PNAITYRHLALG-CFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSI 387
           M  +G   P+A T+  L    C   NL +E FK  E        KK+  S      ++ +
Sbjct: 359 MKGDGGSIPDACTFNTLINSHCCAGNL-DEAFKVFE------NMKKLEVSADSASYSV-L 410

Query: 388 IEIFAEKGDVGNAENLFEEL 407
           I    +KGD G AE LF+EL
Sbjct: 411 IRTLCQKGDYGKAEMLFDEL 430



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 51/177 (28%), Positives = 87/177 (49%), Gaps = 9/177 (5%)

Query: 283 AQVSRAEELWLEMQSVKQLKA-TEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAIT 341
            + + A+E++ EM     +K  T  YN +I  +CKN  +D+     KEM+   C P+ +T
Sbjct: 204 GRTNMAKEVYDEMLKTYGVKPDTYTYNILIRGFCKNSMVDEGFYFFKEMTSFDCDPDVVT 263

Query: 342 YRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAE 401
           Y  L  G  ++  ++     +  GM    +KK +  +P + T  ++I  +  K +V  A 
Sbjct: 264 YNTLVDGLCRAGKIKVAHNLVN-GM----SKKCKDLSPDVVTYTTLIRGYCRKQEVDEAL 318

Query: 402 NLFEELKKANYTKYTFVYNTLIKAYVKAKIND--PNLLRRMI-LGGARPDAETYSLL 455
           ++ EE+           YNTLIK   +A+  D    +L +M   GG+ PDA T++ L
Sbjct: 319 DILEEMNGRGLKPNIVTYNTLIKGLCEAQKWDKMKEILEQMKGDGGSIPDACTFNTL 375



 Score = 46.2 bits (108), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 57/253 (22%), Positives = 96/253 (37%), Gaps = 31/253 (12%)

Query: 98  YNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMK 157
           Y  L+     K  +  +L+ +++M   G   + + +N LI       +   +  IL QMK
Sbjct: 301 YTTLIRGYCRKQEVDEALDILEEMNGRGLKPNIVTYNTLIKGLCEAQKWDKMKEILEQMK 360

Query: 158 ADKVA-PHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLY 216
            D  + P   TF+ L+       N++   KV+ +MK+ EV  +  SY +L         Y
Sbjct: 361 GDGGSIPDACTFNTLINSHCCAGNLDEAFKVFENMKKLEVSADSASYSVLIRTLCQKGDY 420

Query: 217 TVAET-YVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSKSYVLA 275
             AE  + E  EK          ++L+  YG                  P   + SY   
Sbjct: 421 GKAEMLFDELFEK----------EILLSSYG------------------PKPLAASYKCM 452

Query: 276 IEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGC 335
            +      +  +AE +  ++   +  +    Y  VI  +CK G  +   GLL  M     
Sbjct: 453 FQYLCENGKTKKAERVLRQLMK-RGTQDPLSYQIVILGHCKEGSYENGYGLLVWMLRRDF 511

Query: 336 KPNAITYRHLALG 348
            P+   Y +L  G
Sbjct: 512 LPDIDIYDYLIDG 524


>gi|357110839|ref|XP_003557223.1| PREDICTED: pentatricopeptide repeat-containing protein At5g61990,
           mitochondrial-like [Brachypodium distachyon]
          Length = 897

 Score = 75.1 bits (183), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 89/400 (22%), Positives = 161/400 (40%), Gaps = 45/400 (11%)

Query: 94  NELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNIL 153
           N ++Y  LV   + +G    + + + +M   G   + ++++ LI      G+      +L
Sbjct: 349 NVVVYATLVDGFMKEGKAAEAFDILNEMISAGVQPNKIMYDNLIRGLCKIGQLGRASKLL 408

Query: 154 RQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVA 213
            +M      P   T+H LM+     ++ +G  ++ ++M+ S + PN  +Y I+       
Sbjct: 409 NEMIKVGHRPDTFTYHPLMQGHFQHYDKDGAFELLNEMRNSGILPNAYTYGIMINGLCQN 468

Query: 214 RLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSKSYV 273
                A   +E +       N      LII  G+  +G     I    + L N+ +K+ V
Sbjct: 469 GESKEAGNLLEEMISEGLKPNAFMYAPLII--GHSKEG----HISLACESLENM-TKANV 521

Query: 274 LA--------IEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASG 325
           L         I+    + ++  AEE + ++Q    +     Y+ +I  YCK   ++KA  
Sbjct: 522 LPDLFCYNSLIKGLSTVGRIEEAEEYYAQVQKRGLVPDEFTYSGLIHGYCKTRNLEKADQ 581

Query: 326 LLKEMSMNGCKPNAITYRHLALGCFKSN-----------LVEEGFKA------------- 361
           LL++M  +G KPNA TY  L  G FKSN           ++  G K              
Sbjct: 582 LLQQMLNSGLKPNADTYTDLLEGYFKSNDHEKVSSILQSMLGSGDKPDNHIYGIVIRNLS 641

Query: 362 ----LELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTF 417
               +E+   ++T  +     P L    S+I    +  D+  A  L +E+ K        
Sbjct: 642 RSENMEVAFMVLTEVEKNGLVPDLHIYSSLISGLCKMADMEKAVGLLDEMAKEGLEPGIV 701

Query: 418 VYNTLIKAYVKAK--INDPNLLRRMILGGARPDAETYSLL 455
            YN LI  + ++       N+   ++  G  P+  TY+ L
Sbjct: 702 CYNALIDGFCRSGDISRARNVFDSILAKGLLPNCVTYTAL 741



 Score = 71.6 bits (174), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 91/405 (22%), Positives = 157/405 (38%), Gaps = 55/405 (13%)

Query: 60  PKELDYSYLLEFTIKNHGISQGEKLF-------CCIPKDYQNELLYNNLVIACLDKGVIK 112
           P    YS  LE   K       +K+F       C +     NE+ YN ++      G ++
Sbjct: 243 PDVYTYSTFLEAHCKARDFDAAKKVFEEMRRRDCAM-----NEVTYNVMISGLCRSGAVE 297

Query: 113 LSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILM 172
            +  + ++M   G S     +  L+      GR K    +L +M    + P+V  +  L+
Sbjct: 298 EAFGFKEEMVDYGLSPDAFTYGALMNGLCKGGRLKEAKALLDEMSCSGLKPNVVVYATLV 357

Query: 173 KIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTG 232
                +        + ++M  + V+PN++ Y                +  +  L K    
Sbjct: 358 DGFMKEGKAAEAFDILNEMISAGVQPNKIMY----------------DNLIRGLCK---- 397

Query: 233 NNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELW 292
                        G L +   L      V   P+  + +Y   ++   +      A EL 
Sbjct: 398 ------------IGQLGRASKLLNEMIKVGHRPD--TFTYHPLMQGHFQHYDKDGAFELL 443

Query: 293 LEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKS 352
            EM++   L     Y  +I+  C+NG   +A  LL+EM   G KPNA  Y  L +G  K 
Sbjct: 444 NEMRNSGILPNAYTYGIMINGLCQNGESKEAGNLLEEMISEGLKPNAFMYAPLIIGHSKE 503

Query: 353 NLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANY 412
             +    ++LE     +T   V    P L    S+I+  +  G +  AE  + +++K   
Sbjct: 504 GHISLACESLE----NMTKANV---LPDLFCYNSLIKGLSTVGRIEEAEEYYAQVQKRGL 556

Query: 413 TKYTFVYNTLIKAYVKAKI--NDPNLLRRMILGGARPDAETYSLL 455
               F Y+ LI  Y K +       LL++M+  G +P+A+TY+ L
Sbjct: 557 VPDEFTYSGLIHGYCKTRNLEKADQLLQQMLNSGLKPNADTYTDL 601



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 74/327 (22%), Positives = 129/327 (39%), Gaps = 45/327 (13%)

Query: 132 VFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDM 191
           V + L+      G  +T   ++  M    +AP     + L+K       +E + K+   M
Sbjct: 177 VLDVLVDTYKKNGSVRTAAQVVLMMGDLGLAPTRRCCNGLLKDLLRADAMELVWKLKGFM 236

Query: 192 KRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKG 251
           + + + P+  +Y     AH  AR +  A+   E + +     N  T +V+I     L + 
Sbjct: 237 EGAGIPPDVYTYSTFLEAHCKARDFDAAKKVFEEMRRRDCAMNEVTYNVMI---SGLCRS 293

Query: 252 KDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVI 311
             +E  +   +E+ +     Y L+ +AF                           Y +++
Sbjct: 294 GAVEEAFGFKEEMVD-----YGLSPDAF--------------------------TYGALM 322

Query: 312 SVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKAL-ELGMKLIT 370
           +  CK G + +A  LL EMS +G KPN + Y  L  G  K     E F  L E+    + 
Sbjct: 323 NGLCKGGRLKEAKALLDEMSCSGLKPNVVVYATLVDGFMKEGKAAEAFDILNEMISAGVQ 382

Query: 371 TKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAK 430
             K+           ++I    + G +G A  L  E+ K  +   TF Y+ L++ + +  
Sbjct: 383 PNKIMYD--------NLIRGLCKIGQLGRASKLLNEMIKVGHRPDTFTYHPLMQGHFQHY 434

Query: 431 INDP--NLLRRMILGGARPDAETYSLL 455
             D    LL  M   G  P+A TY ++
Sbjct: 435 DKDGAFELLNEMRNSGILPNAYTYGIM 461



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 87/398 (21%), Positives = 150/398 (37%), Gaps = 64/398 (16%)

Query: 64  DYSYLLEFTIKNHGISQGEKLFCCIPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMRV 123
           D ++ L   ++N GI         +P  Y   ++ N L       G  K +   +++M  
Sbjct: 437 DGAFELLNEMRNSGI---------LPNAYTYGIMINGLC----QNGESKEAGNLLEEMIS 483

Query: 124 LGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEG 183
            G   +  ++  LII +S  G        L  M    V P +  ++ L+K  +    IE 
Sbjct: 484 EGLKPNAFMYAPLIIGHSKEGHISLACESLENMTKANVLPDLFCYNSLIKGLSTVGRIEE 543

Query: 184 LMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLII 243
             + Y+ +++  + P+E +Y  L   +   R    A+  ++ +  S    N  T   L  
Sbjct: 544 AEEYYAQVQKRGLVPDEFTYSGLIHGYCKTRNLEKADQLLQQMLNSGLKPNADTYTDL-- 601

Query: 244 LYGYLAKGKDLERIWATVQELPNVRSKS----YVLAIEAFGRIAQVSRAEELWLEMQSVK 299
           L GY  K  D E++ + +Q +     K     Y + I    R   +  A  +  E++   
Sbjct: 602 LEGYF-KSNDHEKVSSILQSMLGSGDKPDNHIYGIVIRNLSRSENMEVAFMVLTEVEKNG 660

Query: 300 QLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGF 359
            +     Y+S+IS  CK   ++KA GLL EM+  G +P  + Y                 
Sbjct: 661 LVPDLHIYSSLISGLCKMADMEKAVGLLDEMAKEGLEPGIVCYN---------------- 704

Query: 360 KALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVY 419
                                     ++I+ F   GD+  A N+F+ +           Y
Sbjct: 705 --------------------------ALIDGFCRSGDISRARNVFDSILAKGLLPNCVTY 738

Query: 420 NTLIKAYVK-AKINDP-NLLRRMILGGARPDAETYSLL 455
             LI    K   I D  +L + M+  G  PDA  Y++L
Sbjct: 739 TALIDGNCKNGDITDAFDLYKDMLDRGIAPDAFVYNVL 776



 Score = 63.2 bits (152), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 84/366 (22%), Positives = 147/366 (40%), Gaps = 47/366 (12%)

Query: 98  YNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMK 157
           YN+L+      G I+ + EY  +++  G       ++ LI         +    +L+QM 
Sbjct: 528 YNSLIKGLSTVGRIEEAEEYYAQVQKRGLVPDEFTYSGLIHGYCKTRNLEKADQLLQQML 587

Query: 158 ADKVAPHVSTFHILMK--IEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARL 215
              + P+  T+  L++   ++NDH  E +  +   M  S  +P+   Y I+    + +  
Sbjct: 588 NSGLKPNADTYTDLLEGYFKSNDH--EKVSSILQSMLGSGDKPDNHIYGIVIRNLSRSEN 645

Query: 216 YTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQEL------PNVRS 269
             VA   +  +EK+        L +   L   L K  D+E+    + E+      P +  
Sbjct: 646 MEVAFMVLTEVEKNGL---VPDLHIYSSLISGLCKMADMEKAVGLLDEMAKEGLEPGI-- 700

Query: 270 KSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKE 329
             Y   I+ F R   +SRA  ++  + +   L     Y ++I   CKNG I  A  L K+
Sbjct: 701 VCYNALIDGFCRSGDISRARNVFDSILAKGLLPNCVTYTALIDGNCKNGDITDAFDLYKD 760

Query: 330 MSMNGCKPNAITYRHLALGCFKSNLVEEG-----------------FKALELGM------ 366
           M   G  P+A  Y  LA GC  +  +E+                  F  L  G       
Sbjct: 761 MLDRGIAPDAFVYNVLATGCSDAADLEQALFLTEEMFNRGYAHVSLFSTLVRGFCKRGRL 820

Query: 367 ----KLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEEL--KKANYT---KYTF 417
               KL+     R   P  +T  ++I  F + G +  A  +F EL  KKA+ +   +++ 
Sbjct: 821 QETEKLLHVMMDREIVPNAQTVENVITEFGKAGKLCEAHRVFAELQQKKASQSSTDRFSL 880

Query: 418 VYNTLI 423
           ++  +I
Sbjct: 881 LFTDMI 886


>gi|147840312|emb|CAN63985.1| hypothetical protein VITISV_001389 [Vitis vinifera]
          Length = 850

 Score = 75.1 bits (183), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 82/369 (22%), Positives = 155/369 (42%), Gaps = 14/369 (3%)

Query: 92  YQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPN 151
           + + + YN L+ A   +G+++ + E M  M   G       +N +I      G+      
Sbjct: 390 FPDVVTYNTLINAYCRQGLLEEAFELMDSMSGKGLKPCVFTYNAIINGLCKTGKYLRAKG 449

Query: 152 ILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHA 211
           +L +M    ++P  +T++IL+     + N+    +++ +M    V P+ VS+  L    +
Sbjct: 450 VLDEMLKIGMSPDTATYNILLVECCRNDNMMDAERIFDEMPSQGVVPDLVSFSALIGLLS 509

Query: 212 VARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPN---VR 268
                  A  Y   ++ +  G     +   I++ G+   G   E +    + L     + 
Sbjct: 510 KNGCLDQALKYFRDMKNA--GLAPDNVIYTILIGGFCRNGVMSEALKVRDEMLEQGCXLD 567

Query: 269 SKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLK 328
             +Y   +    +   +S A+EL+ EM           + ++I+ Y K+G ++KA  L +
Sbjct: 568 VVTYNTILNGLCKEKMLSEADELFTEMTERGVFPDFYTFTTLINGYXKDGNMNKAVTLFE 627

Query: 329 EMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSII 388
            M     KP+ +TY  L  G  K + +E   K  EL   +I+    R   P   +   +I
Sbjct: 628 MMIQRNLKPDVVTYNTLIDGFCKGSEME---KVNELWNDMIS----RRIYPNHISYGILI 680

Query: 389 EIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKA--KINDPNLLRRMILGGAR 446
             +   G V  A  L++E+ +  +       NT++K Y +A   +     L  M+L G  
Sbjct: 681 NGYCNMGCVSEAFRLWDEMVEKGFEATIITCNTIVKGYCRAGNAVKADEFLSNMLLKGIV 740

Query: 447 PDAETYSLL 455
           PD  TY+ L
Sbjct: 741 PDGITYNTL 749



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 74/364 (20%), Positives = 151/364 (41%), Gaps = 18/364 (4%)

Query: 99  NNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKA 158
           N+L+   +  G + L+ E  +++   G  ++    N +I       + +   + L  M+ 
Sbjct: 327 NSLLGGLVKVGWVDLAWEIYQEVVRSGVQVNVYTLNIMINALCKNQKIENTKSFLSDMEE 386

Query: 159 DKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTV 218
             V P V T++ L+        +E   ++   M    ++P   +Y  +         Y  
Sbjct: 387 KGVFPDVVTYNTLINAYCRQGLLEEAFELMDSMSGKGLKPCVFTYNAIINGLCKTGKYLR 446

Query: 219 AETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQE---LPNVRSKSYVLA 275
           A+  ++ + K     + +T ++L++         D ERI+  +     +P++ S S ++ 
Sbjct: 447 AKGVLDEMLKIGMSPDTATYNILLVECCRNDNMMDAERIFDEMPSQGVVPDLVSFSALIG 506

Query: 276 IEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGC 335
           +    +   + +A + + +M++         Y  +I  +C+NG + +A  +  EM   GC
Sbjct: 507 L--LSKNGCLDQALKYFRDMKNAGLAPDNVIYTILIGGFCRNGVMSEALKVRDEMLEQGC 564

Query: 336 KPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKG 395
             + +TY  +  G  K  ++ E         +L T    R   P   T  ++I  + + G
Sbjct: 565 XLDVVTYNTILNGLCKEKMLSEA-------DELFTEMTERGVFPDFYTFTTLINGYXKDG 617

Query: 396 DVGNAENLFEELKKANYTKYTFVYNTLIKAYVKA----KINDPNLLRRMILGGARPDAET 451
           ++  A  LFE + + N       YNTLI  + K     K+N+  L   MI     P+  +
Sbjct: 618 NMNKAVTLFEMMIQRNLKPDVVTYNTLIDGFCKGSEMEKVNE--LWNDMISRRIYPNHIS 675

Query: 452 YSLL 455
           Y +L
Sbjct: 676 YGIL 679



 Score = 62.8 bits (151), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 77/361 (21%), Positives = 147/361 (40%), Gaps = 50/361 (13%)

Query: 118 MKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEAN 177
           + +M  +G S     +N L++             I  +M +  V P + +F  L+ + + 
Sbjct: 451 LDEMLKIGMSPDTATYNILLVECCRNDNMMDAERIFDEMPSQGVVPDLVSFSALIGLLSK 510

Query: 178 DHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVA-ETYVEALEKSMTGNNWS 236
           +  ++  +K + DMK + + P+ V Y IL        + + A +   E LE+        
Sbjct: 511 NGCLDQALKYFRDMKNAGLAPDNVIYTILIGGFCRNGVMSEALKVRDEMLEQG------C 564

Query: 237 TLDVLIILYGYLAKGKDLERIWATVQELPNVRSK--------SYVLAIEAFGRIAQVSRA 288
            LDV  + Y  +  G   E++ +   EL    ++        ++   I  + +   +++A
Sbjct: 565 XLDV--VTYNTILNGLCKEKMLSEADELFTEMTERGVFPDFYTFTTLINGYXKDGNMNKA 622

Query: 289 EELWLEMQSVKQLKA-TEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYR---- 343
             L+ EM   + LK     YN++I  +CK   ++K + L  +M      PN I+Y     
Sbjct: 623 VTLF-EMMIQRNLKPDVVTYNTLIDGFCKGSEMEKVNELWNDMISRRIYPNHISYGILIN 681

Query: 344 -HLALGCFK------SNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGD 396
            +  +GC          +VE+GF+A      +IT               +I++ +   G+
Sbjct: 682 GYCNMGCVSEAFRLWDEMVEKGFEA-----TIITCN-------------TIVKGYCRAGN 723

Query: 397 VGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKINDP--NLLRRMILGGARPDAETYSL 454
              A+     +           YNTLI  ++K +  D    L+ +M   G  PD  TY++
Sbjct: 724 AVKADEFLSNMLLKGIVPDGITYNTLINGFIKEENMDRAFALVNKMENSGLLPDVITYNV 783

Query: 455 L 455
           +
Sbjct: 784 I 784



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 79/375 (21%), Positives = 153/375 (40%), Gaps = 18/375 (4%)

Query: 60  PKELDYSYLLEFTIKNHGISQGEKLFCCIP-KDYQNELLYNNLVIACLDK-GVIKLSLEY 117
           P    Y+ LL    +N  +   E++F  +P +    +L+  + +I  L K G +  +L+Y
Sbjct: 461 PDTATYNILLVECCRNDNMMDAERIFDEMPSQGVVPDLVSFSALIGLLSKNGCLDQALKY 520

Query: 118 MKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEAN 177
            + M+  G +   +++  LI      G       +  +M        V T++ ++     
Sbjct: 521 FRDMKNAGLAPDNVIYTILIGGFCRNGVMSEALKVRDEMLEQGCXLDVVTYNTILNGLCK 580

Query: 178 DHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWST 237
           +  +    +++++M    V P+  ++  L   +        A T  E + +     +  T
Sbjct: 581 EKMLSEADELFTEMTERGVFPDFYTFTTLINGYXKDGNMNKAVTLFEMMIQRNLKPDVVT 640

Query: 238 LDVLIILYGYLAKGKDLERIWATVQELPNVR----SKSYVLAIEAFGRIAQVSRAEELWL 293
            + LI  +    KG ++E++     ++ + R      SY + I  +  +  VS A  LW 
Sbjct: 641 YNTLIDGF---CKGSEMEKVNELWNDMISRRIYPNHISYGILINGYCNMGCVSEAFRLWD 697

Query: 294 EMQSVKQLKATE-QYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKS 352
           EM   K  +AT    N+++  YC+ G   KA   L  M + G  P+ ITY  L  G  K 
Sbjct: 698 EMVE-KGFEATIITCNTIVKGYCRAGNAVKADEFLSNMLLKGIVPDGITYNTLINGFIKE 756

Query: 353 NLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANY 412
             ++  F        L+   +     P + T   I+  F+ +G +  AE +  ++ +   
Sbjct: 757 ENMDRAF-------ALVNKMENSGLLPDVITYNVILNGFSRQGRMQEAELIMLKMIERGV 809

Query: 413 TKYTFVYNTLIKAYV 427
                 Y +LI  +V
Sbjct: 810 NPDRSTYTSLINGHV 824



 Score = 47.4 bits (111), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 56/271 (20%), Positives = 108/271 (39%), Gaps = 13/271 (4%)

Query: 98  YNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMK 157
           YN ++     + ++  + E   +M   G    +  F  LI      G       +   M 
Sbjct: 571 YNTILNGLCKEKMLSEADELFTEMTERGVFPDFYTFTTLINGYXKDGNMNKAVTLFEMMI 630

Query: 158 ADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYT 217
              + P V T++ L+        +E + ++++DM    + PN +SY IL   +    +  
Sbjct: 631 QRNLKPDVVTYNTLIDGFCKGSEMEKVNELWNDMISRRIYPNHISYGILINGYC--NMGC 688

Query: 218 VAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSK------- 270
           V+E +    E    G   + +    I+ GY   G  ++      + L N+  K       
Sbjct: 689 VSEAFRLWDEMVEKGFEATIITCNTIVKGYCRAGNAVK----ADEFLSNMLLKGIVPDGI 744

Query: 271 SYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEM 330
           +Y   I  F +   + RA  L  +M++   L     YN +++ + + G + +A  ++ +M
Sbjct: 745 TYNTLINGFIKEENMDRAFALVNKMENSGLLPDVITYNVILNGFSRQGRMQEAELIMLKM 804

Query: 331 SMNGCKPNAITYRHLALGCFKSNLVEEGFKA 361
              G  P+  TY  L  G    N ++E F+ 
Sbjct: 805 IERGVNPDRSTYTSLINGHVTQNNLKEAFRV 835


>gi|410110087|gb|AFV61123.1| pentatricopeptide repeat-containing protein 123, partial [Lantana
           urticoides]
          Length = 423

 Score = 75.1 bits (183), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 72/319 (22%), Positives = 148/319 (46%), Gaps = 16/319 (5%)

Query: 98  YNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMK 157
           Y+ L+     +G+   +L +++KM         ++++ LI L+          +I  ++K
Sbjct: 2   YSTLITHFGKEGLFDAALSWLQKMEQDQVPGDLVLYSNLIELSRKLCDYSKAISIFSRLK 61

Query: 158 ADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYT 217
           +    P +  ++ ++ +            + S+MK + V PN  SY  L T +   + + 
Sbjct: 62  SSGFTPDLVAYNAMINVFGKAKLFREARSLISEMKTAGVMPNTTSYSTLLTMYVENKKFL 121

Query: 218 VAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQEL---PNVRSKSYVL 274
            A +    + +     + +T +++I +YG L   K+ ++++  ++++   PNV S + +L
Sbjct: 122 EALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTLL 181

Query: 275 AIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNG 334
            +  +G       A  L+  MQ     +    YNS+I +Y K    +KA+ L++EM   G
Sbjct: 182 RV--YGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMIMIYGKTLEHEKANNLIQEMQSRG 239

Query: 335 CKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTL--SIIEIFA 392
            +PN+ITY         S ++    K  +L    +  +K+RSS   ++  L  ++I  + 
Sbjct: 240 IEPNSITY---------STIISIWGKVGKLDRAAMLFQKLRSSGVEIDQILFQTMIVAYE 290

Query: 393 EKGDVGNAENLFEELKKAN 411
             G V +A+ L  ELK+ +
Sbjct: 291 RAGLVAHAKRLLHELKRPD 309



 Score = 42.0 bits (97), Expect = 0.65,   Method: Compositional matrix adjust.
 Identities = 39/158 (24%), Positives = 69/158 (43%), Gaps = 11/158 (6%)

Query: 276 IEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGC 335
           IE   ++   S+A  ++  ++S         YN++I+V+ K     +A  L+ EM   G 
Sbjct: 41  IELSRKLCDYSKAISIFSRLKSSGFTPDLVAYNAMINVFGKAKLFREARSLISEMKTAGV 100

Query: 336 KPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLS--IIEIFAE 393
            PN  +Y  L        +  E  K LE    L    ++R     L+ T    +I+++ +
Sbjct: 101 MPNTTSYSTLL------TMYVENKKFLE---ALSVFSEMREIKCLLDLTTCNIMIDVYGQ 151

Query: 394 KGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKI 431
            G    A+ LF  ++K         YNTL++ Y  A++
Sbjct: 152 LGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAEL 189



 Score = 40.8 bits (94), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 33/126 (26%), Positives = 58/126 (46%), Gaps = 11/126 (8%)

Query: 307 YNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGM 366
           Y+++I+ + K G  D A   L++M  +    + + Y         SNL+E   K  +   
Sbjct: 2   YSTLITHFGKEGLFDAALSWLQKMEQDQVPGDLVLY---------SNLIELSRKLCDYSK 52

Query: 367 KLITTKKVRSS--TPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIK 424
            +    +++SS  TP L    ++I +F +      A +L  E+K A     T  Y+TL+ 
Sbjct: 53  AISIFSRLKSSGFTPDLVAYNAMINVFGKAKLFREARSLISEMKTAGVMPNTTSYSTLLT 112

Query: 425 AYVKAK 430
            YV+ K
Sbjct: 113 MYVENK 118


>gi|125538899|gb|EAY85294.1| hypothetical protein OsI_06665 [Oryza sativa Indica Group]
          Length = 632

 Score = 75.1 bits (183), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 77/367 (20%), Positives = 155/367 (42%), Gaps = 20/367 (5%)

Query: 98  YNNLVIACLDKGVIKLSLEYMKKMRVLGHS-ISYLVFNRLIILNSSPGRRKTIPNILRQM 156
           YN+++I  + +G  +   E   +M   GH     + ++ LI      GR+ +   +L +M
Sbjct: 197 YNSMIIMLIHEGQYEKVHELYNEMSNEGHCQPDTVTYSALISAFCKLGRQDSAIRLLNEM 256

Query: 157 KADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLY 216
           K + + P    + +++ +     N+ G + ++ +M+     P+  +Y  L      A   
Sbjct: 257 KENGMQPTAKIYTMIISLFFKLDNVHGALSLFEEMRYMYCRPDVFTYTELIRGLGKAGRI 316

Query: 217 TVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIW---ATVQELPNVRSKSYV 273
             A  +   +++     +   ++ +I   G   +  D  +++        +PNV + + +
Sbjct: 317 DEAYHFYHEMQREGCKPDTVVMNNMINFLGKAGRLDDGLKLFEEMGVSHCIPNVVTYNTI 376

Query: 274 LA--IEAFGRIAQVSRAEELWLE-MQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEM 330
           +    E+  R+++V      W E M+      +   Y+ +I  +CK   I+KA  LL+EM
Sbjct: 377 IKALFESKSRVSEVFS----WFERMKGSGISPSPFTYSILIDGFCKTNRIEKAMMLLEEM 432

Query: 331 SMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEI 390
              G  P    Y  L     K+       K  +L  +L    K    +        +I+ 
Sbjct: 433 DEKGFPPCPAAYCSLIDALGKA-------KRYDLACELFQELKENCGSSSARVYAVMIKH 485

Query: 391 FAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKINDPNL--LRRMILGGARPD 448
             + G + +A NLF+E+ K   T   + YN L+    +A + D  L  +R+M   G  PD
Sbjct: 486 LGKAGRLDDAINLFDEMSKLGCTPNVYAYNALMSGLARACMLDEALTTMRKMQEHGCLPD 545

Query: 449 AETYSLL 455
             +Y+++
Sbjct: 546 INSYNII 552



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 65/283 (22%), Positives = 116/283 (40%), Gaps = 27/283 (9%)

Query: 186 KVYSDMKRSE---VEPNEVSYCI--LATAHAVARLYTVAETYVEALEKSMTGNNWSTLDV 240
           K+  +M RS    V P E+S  I  L  A  + +  T+    ++A +   T   ++++ +
Sbjct: 144 KMIQEMVRSPICVVTPMELSQVIRMLGNAKMIGKAITIFYQ-IKARKCQPTAQAYNSMII 202

Query: 241 LIILYGYLAKGKDLERIWATVQELPN-----VRSKSYVLAIEAFGRIAQVSRAEELWLEM 295
           ++I  G        E++     E+ N       + +Y   I AF ++ +   A  L  EM
Sbjct: 203 MLIHEG------QYEKVHELYNEMSNEGHCQPDTVTYSALISAFCKLGRQDSAIRLLNEM 256

Query: 296 QSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLV 355
           +        + Y  +IS++ K   +  A  L +EM    C+P+  TY  L  G  K+  +
Sbjct: 257 KENGMQPTAKIYTMIISLFFKLDNVHGALSLFEEMRYMYCRPDVFTYTELIRGLGKAGRI 316

Query: 356 EEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKY 415
           +E +             +     P      ++I    + G + +   LFEE+  ++    
Sbjct: 317 DEAY-------HFYHEMQREGCKPDTVVMNNMINFLGKAGRLDDGLKLFEEMGVSHCIPN 369

Query: 416 TFVYNTLIKAYVKAKINDPNL---LRRMILGGARPDAETYSLL 455
              YNT+IKA  ++K     +     RM   G  P   TYS+L
Sbjct: 370 VVTYNTIIKALFESKSRVSEVFSWFERMKGSGISPSPFTYSIL 412



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 77/351 (21%), Positives = 144/351 (41%), Gaps = 25/351 (7%)

Query: 114 SLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMK 173
           +L   ++MR +        +  LI      GR     +   +M+ +   P     + ++ 
Sbjct: 284 ALSLFEEMRYMYCRPDVFTYTELIRGLGKAGRIDEAYHFYHEMQREGCKPDTVVMNNMIN 343

Query: 174 IEANDHNIEGLMKVYSDMKRSEVEPNEVSY--CILATAHAVARLYTVAETYVEALEKSMT 231
                  ++  +K++ +M  S   PN V+Y   I A   + +R+  V  ++ E ++ S  
Sbjct: 344 FLGKAGRLDDGLKLFEEMGVSHCIPNVVTYNTIIKALFESKSRVSEVF-SWFERMKGS-- 400

Query: 232 GNNWSTLDVLIILYGYLAKGKDLERIWATVQEL-----PNVRSKSYVLAIEAFGRIAQVS 286
           G + S     I++ G+  K   +E+    ++E+     P   + +Y   I+A G+  +  
Sbjct: 401 GISPSPFTYSILIDGF-CKTNRIEKAMMLLEEMDEKGFPPCPA-AYCSLIDALGKAKRYD 458

Query: 287 RAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLA 346
            A EL+ E++      +   Y  +I    K G +D A  L  EMS  GC PN   Y  L 
Sbjct: 459 LACELFQELKENCGSSSARVYAVMIKHLGKAGRLDDAINLFDEMSKLGCTPNVYAYNALM 518

Query: 347 LGCFKSNLVEEGFKALELGMKLITTKKVR--SSTPWLETTLSIIEIFAEKGDVGNAENLF 404
            G  ++ +++E          L T +K++     P + +   I+   A+ G    A  + 
Sbjct: 519 SGLARACMLDEA---------LTTMRKMQEHGCLPDINSYNIILNGLAKTGGPHRAMEML 569

Query: 405 EELKKANYTKYTFVYNTLIKAYVKAKIND--PNLLRRMILGGARPDAETYS 453
             +K +        YNT++ A   A + +    L++ M   G   D  TYS
Sbjct: 570 TNMKNSTIKPDAVSYNTVLSALSHAGMFEEAAELMKEMNALGFEYDLITYS 620


>gi|356495305|ref|XP_003516519.1| PREDICTED: pentatricopeptide repeat-containing protein At2g17525,
           mitochondrial-like [Glycine max]
          Length = 618

 Score = 75.1 bits (183), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 68/323 (21%), Positives = 138/323 (42%), Gaps = 8/323 (2%)

Query: 116 EYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIE 175
           E ++++  +G  +  + +N LI      G+ K   + L+QM+     P+V T+++L+   
Sbjct: 297 EVLERVESMGGLLDVVAYNTLIKGFCGAGKVKVGLHFLKQMENKGCLPNVDTYNVLISGF 356

Query: 176 ANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNW 235
           +    ++  + +++DMK   ++ N V++  L              + +E +E+S  G+  
Sbjct: 357 SESGMLDLALDLFNDMKTDGIKWNFVTFDTLIRGLCSEERIEDGFSILELMEESKEGSRG 416

Query: 236 STLDVLIILYGYLAK-GKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLE 294
                  I+YG L K G D    + T       R+    L I    +   +  A+ ++ +
Sbjct: 417 HISPYNSIIYGLLKKNGFDESAEFLTKMGNLFPRAVDRSLMILEHCKKGAIEDAKRVYDQ 476

Query: 295 MQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNL 354
           M     + +   YN ++  + K G + +A  L+ EM  N C P   T+  +  G  +   
Sbjct: 477 MIDEGGIPSILVYNCLVHGFSKQGNVREAVELMNEMIANNCFPIPSTFNAVITGFCRQGK 536

Query: 355 VEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTK 414
           VE         +KL+     R   P  ET   +I++    GD+  A  +F ++       
Sbjct: 537 VESA-------LKLVEDITARGCVPNTETYSPLIDVLCRNGDLQKAMQVFMQMVDKGILP 589

Query: 415 YTFVYNTLIKAYVKAKINDPNLL 437
             F++N+L+ +  + +    N+L
Sbjct: 590 DLFIWNSLLLSLSQERHFSKNML 612



 Score = 63.2 bits (152), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 67/304 (22%), Positives = 130/304 (42%), Gaps = 30/304 (9%)

Query: 98  YNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMK 157
           YN L+      G +K+ L ++K+M   G   +   +N LI   S  G      ++   MK
Sbjct: 314 YNTLIKGFCGAGKVKVGLHFLKQMENKGCLPNVDTYNVLISGFSESGMLDLALDLFNDMK 373

Query: 158 ADKVAPHVSTFHILMKIEANDHNIEG------LMKVYSDMKRSEVEP-NEVSYCIL---A 207
            D +  +  TF  L++   ++  IE       LM+   +  R  + P N + Y +L    
Sbjct: 374 TDGIKWNFVTFDTLIRGLCSEERIEDGFSILELMEESKEGSRGHISPYNSIIYGLLKKNG 433

Query: 208 TAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKG--KDLERIWATVQELP 265
              +   L  +   +  A+++S+            ++  +  KG  +D +R++  + +  
Sbjct: 434 FDESAEFLTKMGNLFPRAVDRSL------------MILEHCKKGAIEDAKRVYDQMIDEG 481

Query: 266 NVRS-KSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKAS 324
            + S   Y   +  F +   V  A EL  EM +         +N+VI+ +C+ G ++ A 
Sbjct: 482 GIPSILVYNCLVHGFSKQGNVREAVELMNEMIANNCFPIPSTFNAVITGFCRQGKVESAL 541

Query: 325 GLLKEMSMNGCKPNAITYRHL-ALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLET 383
            L+++++  GC PN  TY  L  + C   +L     KA+++ M+++    +     W   
Sbjct: 542 KLVEDITARGCVPNTETYSPLIDVLCRNGDLQ----KAMQVFMQMVDKGILPDLFIWNSL 597

Query: 384 TLSI 387
            LS+
Sbjct: 598 LLSL 601



 Score = 52.0 bits (123), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 52/220 (23%), Positives = 99/220 (45%), Gaps = 17/220 (7%)

Query: 152 ILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHA 211
           +L+ +K+  VAP+   ++ L+     +  +     + ++M+    +PN+V++ IL +   
Sbjct: 197 LLQLIKSRGVAPNTVVYNTLLHALCRNGKVGRARNLMNEME----DPNDVTFNILISG-- 250

Query: 212 VARLYTVAETYVEAL---EKSMT-GNNWSTLDVLIILYGYLAKGKDLE--RIWATVQELP 265
               Y      V+AL   EKS + G     + V  +L      G+ +E   +   V+ + 
Sbjct: 251 ----YCKEGNSVQALVLLEKSFSMGFVPDVVSVTKVLEILCNAGRTMEAAEVLERVESMG 306

Query: 266 NVRSK-SYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKAS 324
            +    +Y   I+ F    +V        +M++   L   + YN +IS + ++G +D A 
Sbjct: 307 GLLDVVAYNTLIKGFCGAGKVKVGLHFLKQMENKGCLPNVDTYNVLISGFSESGMLDLAL 366

Query: 325 GLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALEL 364
            L  +M  +G K N +T+  L  G      +E+GF  LEL
Sbjct: 367 DLFNDMKTDGIKWNFVTFDTLIRGLCSEERIEDGFSILEL 406



 Score = 49.7 bits (117), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 44/156 (28%), Positives = 72/156 (46%), Gaps = 17/156 (10%)

Query: 304 TEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALG-CFKSNLVEEGFKAL 362
           T  YN+++   C+NG + +A  L+ EM      PN +T+  L  G C + N V+    AL
Sbjct: 210 TVVYNTLLHALCRNGKVGRARNLMNEME----DPNDVTFNILISGYCKEGNSVQ----AL 261

Query: 363 ELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTL 422
            L  K  +   V    P + +   ++EI    G    A  + E ++          YNTL
Sbjct: 262 VLLEKSFSMGFV----PDVVSVTKVLEILCNAGRTMEAAEVLERVESMGGLLDVVAYNTL 317

Query: 423 IKAYV---KAKINDPNLLRRMILGGARPDAETYSLL 455
           IK +    K K+   + L++M   G  P+ +TY++L
Sbjct: 318 IKGFCGAGKVKVG-LHFLKQMENKGCLPNVDTYNVL 352


>gi|115482780|ref|NP_001064983.1| Os10g0501000 [Oryza sativa Japonica Group]
 gi|113639592|dbj|BAF26897.1| Os10g0501000, partial [Oryza sativa Japonica Group]
          Length = 451

 Score = 75.1 bits (183), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 101/451 (22%), Positives = 176/451 (39%), Gaps = 77/451 (17%)

Query: 9   PVGSAFQSW-MREGFPVHRGEIFHSINRLRKLQLNKRALEVMEWVIRERPYRPKELDYSY 67
           P+    + W + E   V + E+   I  L + +   +AL++  W+           D + 
Sbjct: 69  PLSPVLEQWCLAEERHVAKPEVQSIIKYLCRRRRFSQALQLSMWMTERLHLHLSPGDVAN 128

Query: 68  LLEFTIKNHGISQGEKLFCCIPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHS 127
            LE   K +G+ +  + F  +P   + +  Y +L+    +   ++ + E  +KMR +G +
Sbjct: 129 RLELITKVYGLDRAVEYFDSMPDQLKQQQCYGSLLKCYAEANCVEKAEELFEKMRGMGMA 188

Query: 128 ISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKV 187
            SY                                     ++++M++   +  +E +  +
Sbjct: 189 SSY------------------------------------AYNVMMRLYLQNGQVERVHSM 212

Query: 188 YSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGY 247
           +  M+ S + P+      ++T H          T V  L K  T         L+  Y  
Sbjct: 213 HQAMEESGIVPD------VSTTH----------TLVAVLRKKKT---------LVAAYVV 247

Query: 248 LAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQY 307
               K +E     V E  N  +  Y+  I    ++  +  AE+ + E +S      +   
Sbjct: 248 AEDIKAIE----NVLEKANSCNSMYMCRIGVLLKMNDMVGAEKAYEEWESKHVYHDSRLI 303

Query: 308 NSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMK 367
           N ++  YCK G +DKA  L+ +    G  P A T   LA G FK   V    KA +L  K
Sbjct: 304 NLLVDAYCKEGLMDKAEALVDQFIKKGRMPFANTCYKLAGGYFKVGQVS---KAADLTKK 360

Query: 368 LITTKKVRSSTPW---LETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIK 424
            + +    +S  W   L   L  +  FAE+ +V  AE +   L++   T    +Y+ L+K
Sbjct: 361 ALAS----ASNEWIPDLTNVLMSLNYFAEQKNVEAAEEMMSLLQRL-VTPTRDIYHGLLK 415

Query: 425 AYVKAKINDPNLLRRMILGGARPDAETYSLL 455
            YV A     +LL RM   G   D ET  +L
Sbjct: 416 TYVNAGKPVSDLLHRMKKDGMEADEETEKIL 446


>gi|224086515|ref|XP_002307901.1| predicted protein [Populus trichocarpa]
 gi|222853877|gb|EEE91424.1| predicted protein [Populus trichocarpa]
          Length = 724

 Score = 74.7 bits (182), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 103/422 (24%), Positives = 174/422 (41%), Gaps = 23/422 (5%)

Query: 44  RALEVMEWVIRE--RPYRPKELDYSYLLEFTIKNHGISQGEKLFCCIPKDYQNELLYNNL 101
           R LE  + V R   + + P ++ Y YL+    K   I + + L   +P    N + +N L
Sbjct: 295 RVLEGAKLVDRMILKGFTPNDMTYGYLMHGLCKTCRIDEAQALLSKVPG--PNVVHFNTL 352

Query: 102 VIACLDKGVIKLSLEYM-KKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADK 160
           V   +  G +  +  ++  KM   G+      F+ L+      G   +   ++  M A  
Sbjct: 353 VNGFVRNGRLNEATAFVYDKMINNGYVPDVFTFSTLVNGLCKKGLFGSALELVNDMDAKG 412

Query: 161 VAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAV-ARLYTVA 219
             P+++T+ IL+        +E    +  +M       N V Y  L +A     +++   
Sbjct: 413 CKPNLNTYTILIDGFCKKGQLEEAGLILREMLTKGFSLNTVGYNALISALCKHGKIHEAL 472

Query: 220 ETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWA----TVQELPNVRSKSYVLA 275
           + + E   K    + + T + LI  +G L +  ++E   A     V E     S ++   
Sbjct: 473 DMFGEMSSKGCKPDIF-TFNSLI--FG-LCRVDEMEDALALYRDMVLEGVIANSVTFNTL 528

Query: 276 IEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGC 335
           I AF R  ++  A +L  +M           YN +I   CK G ++K  GL +EM   G 
Sbjct: 529 IHAFLRRGEIQEALKLVNDMLFRGCPLDEITYNGLIKALCKTGAVEKGLGLFEEMIRKGL 588

Query: 336 KPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKG 395
            P+ IT   L  G   +  V     ALE    +I     R  +P + T  S+I    ++G
Sbjct: 589 TPSIITCNILINGFCTAGKVH---NALEFMRDMIH----RGFSPDIVTYNSLINGLCKRG 641

Query: 396 DVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKINDPN--LLRRMILGGARPDAETYS 453
            +  A NLFE+L+       +  YNTLI    +    D    LL R +  G  P+  T++
Sbjct: 642 RIQEALNLFEKLQAEGIQPDSITYNTLICWLCREGAFDDACFLLYRGVENGFVPNDVTWN 701

Query: 454 LL 455
           +L
Sbjct: 702 IL 703



 Score = 72.4 bits (176), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 103/435 (23%), Positives = 170/435 (39%), Gaps = 67/435 (15%)

Query: 62  ELDYSYLLEFTIKNHGISQGEKLFCCIPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKM 121
           E+D + LL   +  HG         C+P    N ++Y  L+ A   +  +  +L+ +++M
Sbjct: 225 EVDNACLLLRDMTKHG---------CVP----NSMIYQTLIDALSKRDRVDEALKLLEEM 271

Query: 122 RVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNI 181
            ++G       FN +I       R      ++ +M      P+  T+  LM        I
Sbjct: 272 FLMGCPPDVNTFNTVIYGFCRLNRVLEGAKLVDRMILKGFTPNDMTYGYLMHGLCKTCRI 331

Query: 182 EGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVL 241
           +    + S +      PN V +  L   +   R   + E      +K +  NN    DV 
Sbjct: 332 DEAQALLSKVP----GPNVVHFNTLV--NGFVRNGRLNEATAFVYDKMI--NNGYVPDVF 383

Query: 242 IILYGYLAKGKDLERIWATVQEL----------PNVRSKSYVLAIEAFGRIAQVSRAEEL 291
              +  L  G   + ++ +  EL          PN+   +Y + I+ F +  Q+  A  +
Sbjct: 384 T--FSTLVNGLCKKGLFGSALELVNDMDAKGCKPNL--NTYTILIDGFCKKGQLEEAGLI 439

Query: 292 WLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFK 351
             EM +      T  YN++IS  CK+G I +A  +  EMS  GCKP+  T+  L  G  +
Sbjct: 440 LREMLTKGFSLNTVGYNALISALCKHGKIHEALDMFGEMSSKGCKPDIFTFNSLIFGLCR 499

Query: 352 -----------SNLVEEGFKA-----------------LELGMKLITTKKVRSSTPWLET 383
                       ++V EG  A                 ++  +KL+     R   P  E 
Sbjct: 500 VDEMEDALALYRDMVLEGVIANSVTFNTLIHAFLRRGEIQEALKLVNDMLFRGC-PLDEI 558

Query: 384 TLS-IIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKA-KI-NDPNLLRRM 440
           T + +I+   + G V     LFEE+ +   T      N LI  +  A K+ N    +R M
Sbjct: 559 TYNGLIKALCKTGAVEKGLGLFEEMIRKGLTPSIITCNILINGFCTAGKVHNALEFMRDM 618

Query: 441 ILGGARPDAETYSLL 455
           I  G  PD  TY+ L
Sbjct: 619 IHRGFSPDIVTYNSL 633



 Score = 56.6 bits (135), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 76/335 (22%), Positives = 132/335 (39%), Gaps = 49/335 (14%)

Query: 125 GHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGL 184
           G+  S+ V+  LI    +    K I  +L QMK + +    S F ++MK           
Sbjct: 99  GYCHSFSVYYLLIDKLGAAAGFKVIDRLLLQMKEEGIVFRESLFILIMKYYGRAGLPGQA 158

Query: 185 MKVYSDMKRSEV-EPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLII 243
            ++  DMK     EP+  SY ++     V    +VA                       +
Sbjct: 159 TRLLLDMKGVYCCEPSFRSYNVVLDVLVVGNCPSVASN---------------------V 197

Query: 244 LYGYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKA 303
            Y  L+KG             PN    ++ L ++A   + +V  A  L  +M     +  
Sbjct: 198 FYDMLSKGVS-----------PN--DYTFGLVMKALCMVNEVDNACLLLRDMTKHGCVPN 244

Query: 304 TEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALE 363
           +  Y ++I    K   +D+A  LL+EM + GC P+  T+  +  G  + N V E      
Sbjct: 245 SMIYQTLIDALSKRDRVDEALKLLEEMFLMGCPPDVNTFNTVIYGFCRLNRVLE------ 298

Query: 364 LGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLI 423
            G KL+    ++  TP   T   ++    +   +  A+ L  ++   N       +NTL+
Sbjct: 299 -GAKLVDRMILKGFTPNDMTYGYLMHGLCKTCRIDEAQALLSKVPGPNVVH----FNTLV 353

Query: 424 KAYVK-AKINDPN--LLRRMILGGARPDAETYSLL 455
             +V+  ++N+    +  +MI  G  PD  T+S L
Sbjct: 354 NGFVRNGRLNEATAFVYDKMINNGYVPDVFTFSTL 388


>gi|125600636|gb|EAZ40212.1| hypothetical protein OsJ_24656 [Oryza sativa Japonica Group]
          Length = 661

 Score = 74.7 bits (182), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 80/415 (19%), Positives = 169/415 (40%), Gaps = 57/415 (13%)

Query: 59  RPKELDYSYLLEFTIKNHGISQGEKLF-----CCIPKDYQNELLYNNLVIACLDKGVIKL 113
           +P+   Y+ LL+  +K   +   E++      C +  D   E  Y+ LV A    G  + 
Sbjct: 289 KPRTRAYNALLKGYVKIGSLKNAEQVLDEMSQCGVAPD---EATYSLLVDAYTRAGRWES 345

Query: 114 SLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMK 173
           +   +K+M   G   S  VF+R++      G  +    +LR+M A  V P    +++++ 
Sbjct: 346 ARILLKEMEADGVKPSSYVFSRILAGFRDRGEWQKAFAVLREMHASGVRPDRHFYNVMID 405

Query: 174 IEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGN 233
                + +   M  +  M+   +EP+ V++  L  AH     +  A    + + +S    
Sbjct: 406 TFGKYNCLGHAMDAFDRMREEGIEPDVVTWNTLIDAHCKGGRHDRAIELFDEMRESNCPL 465

Query: 234 NWSTLDVLIILYGYLAKGKDLERIWATVQE---LPNVRSKSYVLAIEAFGRIAQVSRAEE 290
             +T +++I L G   + + +E + A ++E   +PN+   +Y   ++ +GR  +   A +
Sbjct: 466 GTTTYNIMINLLGEEQRWEGVEAMLAEMKEQGLVPNI--ITYTTLVDVYGRSGRFKEAVD 523

Query: 291 LWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCF 350
               M++     +   Y+++++ Y + G  D A  ++K M  +G + + +          
Sbjct: 524 CIEAMKADGLKPSPTMYHALVNAYAQRGLADHALNVVKAMRADGLEASTVVLN------- 576

Query: 351 KSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKA 410
                                              S+I  F E   +  A ++ + +K+ 
Sbjct: 577 -----------------------------------SLINAFGEDRRIAEAFSVLQFMKEN 601

Query: 411 NYTKYTFVYNTLIKAYVKAKIND--PNLLRRMILGGARPDAETYSLLKLAEQFQK 463
                   Y TL+KA ++ +  +  P +   MI  G  PD +  ++L+ A ++ K
Sbjct: 602 GLRPDVITYTTLMKALIRVEQFEKVPVIYEEMITSGCAPDRKARAMLRSALRYMK 656



 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 80/395 (20%), Positives = 165/395 (41%), Gaps = 26/395 (6%)

Query: 52  VIRERPYRPKELDYSYLLEFTIKNHGISQGEKLFCCIPKDYQNEL-----LYNNLVIACL 106
           ++RE  + P    YS+LL   +      +   L   +    ++ L     L+++L+ A  
Sbjct: 173 LLREHSFLPDLASYSHLLALLLNTRDPPEAALLDRLLGDLRESRLEPDAPLFSDLISAFA 232

Query: 107 DKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPN----ILRQMKADKVA 162
              +   +LE +   + +G +      N +  L SS G  + +       L    A ++ 
Sbjct: 233 RARLPDAALELLASAQAIGLTPRS---NAVTALISSLGSARRVAEAEALFLEFFLAGEIK 289

Query: 163 PHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETY 222
           P    ++ L+K      +++   +V  +M +  V P+E +Y +L  A+  A  +  A   
Sbjct: 290 PRTRAYNALLKGYVKIGSLKNAEQVLDEMSQCGVAPDEATYSLLVDAYTRAGRWESARIL 349

Query: 223 VEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQEL--PNVRSKS--YVLAIEA 278
           ++ +E    G   S+     IL G+  +G + ++ +A ++E+    VR     Y + I+ 
Sbjct: 350 LKEMEAD--GVKPSSYVFSRILAGFRDRG-EWQKAFAVLREMHASGVRPDRHFYNVMIDT 406

Query: 279 FGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPN 338
           FG+   +  A + +  M+          +N++I  +CK G  D+A  L  EM  + C   
Sbjct: 407 FGKYNCLGHAMDAFDRMREEGIEPDVVTWNTLIDAHCKGGRHDRAIELFDEMRESNCPLG 466

Query: 339 AITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVG 398
             TY ++ +         EG +A      ++   K +   P + T  ++++++   G   
Sbjct: 467 TTTY-NIMINLLGEEQRWEGVEA------MLAEMKEQGLVPNIITYTTLVDVYGRSGRFK 519

Query: 399 NAENLFEELKKANYTKYTFVYNTLIKAYVKAKIND 433
            A +  E +K         +Y+ L+ AY +  + D
Sbjct: 520 EAVDCIEAMKADGLKPSPTMYHALVNAYAQRGLAD 554


>gi|125542535|gb|EAY88674.1| hypothetical protein OsI_10149 [Oryza sativa Indica Group]
          Length = 333

 Score = 74.7 bits (182), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 71/306 (23%), Positives = 127/306 (41%), Gaps = 16/306 (5%)

Query: 153 LRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAV 212
           LR+M+   + P    + +++        +   ++V  +M      P+ V+Y  L      
Sbjct: 4   LREMRCFGLVPDGVIYTMVIGGFCRAGLMSDALRVRDEMVGCGCLPDVVTYNTLLNGLCK 63

Query: 213 ARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSK-- 270
            R    AE  +  + +     +  T   LI  +GY  +GK L++       + N R +  
Sbjct: 64  ERRLLDAEGLLNEMRERGVPPDLCTFTTLI--HGYCIEGK-LDKALQLFDTMLNQRLRPD 120

Query: 271 --SYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLK 328
             +Y   I+   R   + +A +LW +M S +       Y+ +I  +C+ G ++ A G L 
Sbjct: 121 IVTYNTLIDGMCRQGDLDKANDLWDDMHSREIFPNHVTYSILIDSHCEKGQVEDAFGFLD 180

Query: 329 EMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSII 388
           EM   G  PN +TY  +  G  +S  V +G K L+  M       V   +P L T  ++I
Sbjct: 181 EMINKGILPNIMTYNSIIKGYCRSGNVSKGQKFLQKMM-------VNKVSPDLITYNTLI 233

Query: 389 EIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAY-VKAKINDPN-LLRRMILGGAR 446
             + ++  + +A  L   ++K         YN LI  + V   + +   +  +M   G  
Sbjct: 234 HGYIKEDKMHDAFKLLNMMEKEKVQPDVVTYNMLINGFSVHGNVQEAGWIFEKMCAKGIE 293

Query: 447 PDAETY 452
           PD  TY
Sbjct: 294 PDRYTY 299



 Score = 73.2 bits (178), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 70/318 (22%), Positives = 136/318 (42%), Gaps = 12/318 (3%)

Query: 115 LEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKI 174
           + Y+++MR  G     +++  +I      G       +  +M      P V T++ L+  
Sbjct: 1   MAYLREMRCFGLVPDGVIYTMVIGGFCRAGLMSDALRVRDEMVGCGCLPDVVTYNTLLNG 60

Query: 175 EANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAV-ARLYTVAETYVEALEKSMTGN 233
              +  +     + ++M+   V P+  ++  L   + +  +L    + +   L + +  +
Sbjct: 61  LCKERRLLDAEGLLNEMRERGVPPDLCTFTTLIHGYCIEGKLDKALQLFDTMLNQRLRPD 120

Query: 234 --NWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEEL 291
              ++TL   +   G L K  DL     + +  PN    +Y + I++     QV  A   
Sbjct: 121 IVTYNTLIDGMCRQGDLDKANDLWDDMHSREIFPN--HVTYSILIDSHCEKGQVEDAFGF 178

Query: 292 WLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFK 351
             EM +   L     YNS+I  YC++G + K    L++M +N   P+ ITY  L  G  K
Sbjct: 179 LDEMINKGILPNIMTYNSIIKGYCRSGNVSKGQKFLQKMMVNKVSPDLITYNTLIHGYIK 238

Query: 352 SNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKAN 411
            + + + FK L     ++  +KV+   P + T   +I  F+  G+V  A  +FE++    
Sbjct: 239 EDKMHDAFKLL----NMMEKEKVQ---PDVVTYNMLINGFSVHGNVQEAGWIFEKMCAKG 291

Query: 412 YTKYTFVYNTLIKAYVKA 429
                + Y ++I  +V A
Sbjct: 292 IEPDRYTYMSMINGHVTA 309



 Score = 48.9 bits (115), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 65/297 (21%), Positives = 111/297 (37%), Gaps = 43/297 (14%)

Query: 118 MKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEAN 177
           + +MR  G       F  LI      G+      +   M   ++ P + T++ L+     
Sbjct: 74  LNEMRERGVPPDLCTFTTLIHGYCIEGKLDKALQLFDTMLNQRLRPDIVTYNTLIDGMCR 133

Query: 178 DHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWST 237
             +++    ++ DM   E+ PN V+Y IL  +H                EK    + +  
Sbjct: 134 QGDLDKANDLWDDMHSREIFPNHVTYSILIDSHC---------------EKGQVEDAFGF 178

Query: 238 LDVLIILYGYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQS 297
           LD +I       KG            LPN+   +Y   I+ + R   VS+ ++   +M  
Sbjct: 179 LDEMI------NKGI-----------LPNIM--TYNSIIKGYCRSGNVSKGQKFLQKMMV 219

Query: 298 VKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALG-CFKSNLVE 356
            K       YN++I  Y K   +  A  LL  M     +P+ +TY  L  G     N+ E
Sbjct: 220 NKVSPDLITYNTLIHGYIKEDKMHDAFKLLNMMEKEKVQPDVVTYNMLINGFSVHGNVQE 279

Query: 357 EGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYT 413
            G+   ++  K I         P   T +S+I      G+   A  L +E+ +  + 
Sbjct: 280 AGWIFEKMCAKGI--------EPDRYTYMSMINGHVTAGNSKEAFQLHDEMLQRGFA 328



 Score = 43.5 bits (101), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 33/171 (19%), Positives = 85/171 (49%), Gaps = 3/171 (1%)

Query: 44  RALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQGEKLFCCIPKD--YQNELLYNNL 101
           +AL++ + ++ +R  RP  + Y+ L++   +   + +   L+  +     + N + Y+ L
Sbjct: 104 KALQLFDTMLNQR-LRPDIVTYNTLIDGMCRQGDLDKANDLWDDMHSREIFPNHVTYSIL 162

Query: 102 VIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKV 161
           + +  +KG ++ +  ++ +M   G   + + +N +I      G        L++M  +KV
Sbjct: 163 IDSHCEKGQVEDAFGFLDEMINKGILPNIMTYNSIIKGYCRSGNVSKGQKFLQKMMVNKV 222

Query: 162 APHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAV 212
           +P + T++ L+     +  +    K+ + M++ +V+P+ V+Y +L    +V
Sbjct: 223 SPDLITYNTLIHGYIKEDKMHDAFKLLNMMEKEKVQPDVVTYNMLINGFSV 273


>gi|115445449|ref|NP_001046504.1| Os02g0266200 [Oryza sativa Japonica Group]
 gi|50251963|dbj|BAD27898.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|113536035|dbj|BAF08418.1| Os02g0266200 [Oryza sativa Japonica Group]
 gi|125581581|gb|EAZ22512.1| hypothetical protein OsJ_06176 [Oryza sativa Japonica Group]
 gi|215704610|dbj|BAG94238.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|215737116|dbj|BAG96045.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 632

 Score = 74.7 bits (182), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 77/367 (20%), Positives = 155/367 (42%), Gaps = 20/367 (5%)

Query: 98  YNNLVIACLDKGVIKLSLEYMKKMRVLGHS-ISYLVFNRLIILNSSPGRRKTIPNILRQM 156
           YN+++I  + +G  +   E   +M   GH     + ++ LI      GR+ +   +L +M
Sbjct: 197 YNSMIIMLIHEGQYEKVHELYNEMSNEGHCHPDTVTYSALISAFCKLGRQDSAIRLLNEM 256

Query: 157 KADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLY 216
           K + + P    + +++ +     N+ G + ++ +M+     P+  +Y  L      A   
Sbjct: 257 KENGMQPTAKIYTMIISLFFKLDNVHGALSLFEEMRYMYCRPDVFTYTELIRGLGKAGRI 316

Query: 217 TVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIW---ATVQELPNVRSKSYV 273
             A  +   +++     +   ++ +I   G   +  D  +++        +PNV + + +
Sbjct: 317 DEAYHFYHEMQREDCKPDTVVMNNMINFLGKAGRLDDGLKLFEEMGVSHCIPNVVTYNTI 376

Query: 274 LA--IEAFGRIAQVSRAEELWLE-MQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEM 330
           +    E+  R+++V      W E M+      +   Y+ +I  +CK   I+KA  LL+EM
Sbjct: 377 IKALFESKSRVSEVFS----WFERMKGSGISPSPFTYSILIDGFCKTNRIEKAMMLLEEM 432

Query: 331 SMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEI 390
              G  P    Y  L     K+       K  +L  +L    K    +        +I+ 
Sbjct: 433 DEKGFPPCPAAYCSLIDALGKA-------KRYDLACELFQELKENCGSSSARVYAVMIKH 485

Query: 391 FAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKINDPNL--LRRMILGGARPD 448
             + G + +A NLF+E+ K   T   + YN L+    +A + D  L  +R+M   G  PD
Sbjct: 486 LGKAGRLDDAINLFDEMSKLGCTPNVYAYNALMSGLARACMLDEALTTMRKMQEHGCLPD 545

Query: 449 AETYSLL 455
             +Y+++
Sbjct: 546 INSYNII 552



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 65/283 (22%), Positives = 116/283 (40%), Gaps = 27/283 (9%)

Query: 186 KVYSDMKRSE---VEPNEVSYCI--LATAHAVARLYTVAETYVEALEKSMTGNNWSTLDV 240
           K+  +M RS    V P E+S  I  L  A  + +  T+    ++A +   T   ++++ +
Sbjct: 144 KMIQEMVRSPICVVTPMELSQVIRMLGNAKMIGKAITIFYQ-IKARKCQPTAQAYNSMII 202

Query: 241 LIILYGYLAKGKDLERIWATVQELPN-----VRSKSYVLAIEAFGRIAQVSRAEELWLEM 295
           ++I  G        E++     E+ N       + +Y   I AF ++ +   A  L  EM
Sbjct: 203 MLIHEG------QYEKVHELYNEMSNEGHCHPDTVTYSALISAFCKLGRQDSAIRLLNEM 256

Query: 296 QSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLV 355
           +        + Y  +IS++ K   +  A  L +EM    C+P+  TY  L  G  K+  +
Sbjct: 257 KENGMQPTAKIYTMIISLFFKLDNVHGALSLFEEMRYMYCRPDVFTYTELIRGLGKAGRI 316

Query: 356 EEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKY 415
           +E +             +     P      ++I    + G + +   LFEE+  ++    
Sbjct: 317 DEAY-------HFYHEMQREDCKPDTVVMNNMINFLGKAGRLDDGLKLFEEMGVSHCIPN 369

Query: 416 TFVYNTLIKAYVKAKINDPNL---LRRMILGGARPDAETYSLL 455
              YNT+IKA  ++K     +     RM   G  P   TYS+L
Sbjct: 370 VVTYNTIIKALFESKSRVSEVFSWFERMKGSGISPSPFTYSIL 412



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 77/351 (21%), Positives = 144/351 (41%), Gaps = 25/351 (7%)

Query: 114 SLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMK 173
           +L   ++MR +        +  LI      GR     +   +M+ +   P     + ++ 
Sbjct: 284 ALSLFEEMRYMYCRPDVFTYTELIRGLGKAGRIDEAYHFYHEMQREDCKPDTVVMNNMIN 343

Query: 174 IEANDHNIEGLMKVYSDMKRSEVEPNEVSY--CILATAHAVARLYTVAETYVEALEKSMT 231
                  ++  +K++ +M  S   PN V+Y   I A   + +R+  V  ++ E ++ S  
Sbjct: 344 FLGKAGRLDDGLKLFEEMGVSHCIPNVVTYNTIIKALFESKSRVSEVF-SWFERMKGS-- 400

Query: 232 GNNWSTLDVLIILYGYLAKGKDLERIWATVQEL-----PNVRSKSYVLAIEAFGRIAQVS 286
           G + S     I++ G+  K   +E+    ++E+     P   + +Y   I+A G+  +  
Sbjct: 401 GISPSPFTYSILIDGF-CKTNRIEKAMMLLEEMDEKGFPPCPA-AYCSLIDALGKAKRYD 458

Query: 287 RAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLA 346
            A EL+ E++      +   Y  +I    K G +D A  L  EMS  GC PN   Y  L 
Sbjct: 459 LACELFQELKENCGSSSARVYAVMIKHLGKAGRLDDAINLFDEMSKLGCTPNVYAYNALM 518

Query: 347 LGCFKSNLVEEGFKALELGMKLITTKKVR--SSTPWLETTLSIIEIFAEKGDVGNAENLF 404
            G  ++ +++E          L T +K++     P + +   I+   A+ G    A  + 
Sbjct: 519 SGLARACMLDEA---------LTTMRKMQEHGCLPDINSYNIILNGLAKTGGPHRAMEML 569

Query: 405 EELKKANYTKYTFVYNTLIKAYVKAKIND--PNLLRRMILGGARPDAETYS 453
             +K +        YNT++ A   A + +    L++ M   G   D  TYS
Sbjct: 570 TNMKNSTIKPDAVSYNTVLSALSHAGMFEEAAELMKEMNALGFEYDLITYS 620


>gi|145360025|ref|NP_179305.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|122223754|sp|Q0WPZ6.1|PP158_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g17140
 gi|110737729|dbj|BAF00803.1| hypothetical protein [Arabidopsis thaliana]
 gi|330251496|gb|AEC06590.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 874

 Score = 74.7 bits (182), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 97/475 (20%), Positives = 199/475 (41%), Gaps = 47/475 (9%)

Query: 18  MREGFPVHRGEIFHSINRLRKLQLNKRALEVMEWVIRER---PYRPKELDYSYLLEFTIK 74
           +R  FP ++  ++   N L +  + +R +E + W+ ++       P+   ++ L+     
Sbjct: 101 VRSRFPENKPSVYL-YNLLLESCIKERRVEFVSWLYKDMVLCGIAPQTYTFNLLIRALCD 159

Query: 75  NHGISQGEKLFCCIPKD--YQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLV 132
           +  +    +LF  +P+     NE  +  LV      G+    LE +  M   G   + ++
Sbjct: 160 SSCVDAARELFDEMPEKGCKPNEFTFGILVRGYCKAGLTDKGLELLNAMESFGVLPNKVI 219

Query: 133 FNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMK 192
           +N ++      GR      ++ +M+ + + P + TF+  +     +  +    +++SDM+
Sbjct: 220 YNTIVSSFCREGRNDDSEKMVEKMREEGLVPDIVTFNSRISALCKEGKVLDASRIFSDME 279

Query: 193 RSEV----EPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVL-IILYGY 247
             E      PN ++Y ++        L   A+T  E++ ++   ++ ++L    I L G 
Sbjct: 280 LDEYLGLPRPNSITYNLMLKGFCKVGLLEDAKTLFESIREN---DDLASLQSYNIWLQGL 336

Query: 248 LAKGKDLERIWATVQEL-----PNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLK 302
           +  GK +E      Q       P++ S  Y + ++   ++  +S A+ +   M+      
Sbjct: 337 VRHGKFIEAETVLKQMTDKGIGPSIYS--YNILMDGLCKLGMLSDAKTIVGLMKRNGVCP 394

Query: 303 ATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKAL 362
               Y  ++  YC  G +D A  LL+EM  N C PNA T   L    +K   + E  + L
Sbjct: 395 DAVTYGCLLHGYCSVGKVDAAKSLLQEMMRNNCLPNAYTCNILLHSLWKMGRISEAEELL 454

Query: 363 E------LGMKLITTKKVRS---STPWLETTLSIIEIF-----AEKGDVGNA------EN 402
                   G+  +T   +      +  L+  + I++       A  G++GN+      ++
Sbjct: 455 RKMNEKGYGLDTVTCNIIVDGLCGSGELDKAIEIVKGMRVHGSAALGNLGNSYIGLVDDS 514

Query: 403 LFEELKKANYTKYTFVYNTLIKA--YVKAKINDPNLLRRMILGGARPDAETYSLL 455
           L E     +   Y+ + N L KA  + +AK    NL   M+    +PD+  Y++ 
Sbjct: 515 LIENNCLPDLITYSTLLNGLCKAGRFAEAK----NLFAEMMGEKLQPDSVAYNIF 565



 Score = 62.4 bits (150), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 91/403 (22%), Positives = 158/403 (39%), Gaps = 47/403 (11%)

Query: 59  RPKELDYSYLLEFTIKNHGISQGEKLFCCIPK--DYQNELLYNNLVIACLDKGVIKLSLE 116
           RP  + Y+ +L+   K   +   + LF  I +  D  +   YN  +   +  G    +  
Sbjct: 288 RPNSITYNLMLKGFCKVGLLEDAKTLFESIRENDDLASLQSYNIWLQGLVRHGKFIEAET 347

Query: 117 YMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEA 176
            +K+M   G   S   +N L+      G       I+  MK + V P   T+  L+    
Sbjct: 348 VLKQMTDKGIGPSIYSYNILMDGLCKLGMLSDAKTIVGLMKRNGVCPDAVTYGCLLHGYC 407

Query: 177 NDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMT--GNN 234
           +   ++    +  +M R+   PN  +  IL   H++ ++  ++E   E L + M   G  
Sbjct: 408 SVGKVDAAKSLLQEMMRNNCLPNAYTCNILL--HSLWKMGRISEA--EELLRKMNEKGYG 463

Query: 235 WSTLDVLIILYGYLAKGKDLERIWATVQE-----------------------------LP 265
             T+   II+ G    G +L++    V+                              LP
Sbjct: 464 LDTVTCNIIVDGLCGSG-ELDKAIEIVKGMRVHGSAALGNLGNSYIGLVDDSLIENNCLP 522

Query: 266 NVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASG 325
           ++ + S +L      +  + + A+ L+ EM   K    +  YN  I  +CK G I  A  
Sbjct: 523 DLITYSTLL--NGLCKAGRFAEAKNLFAEMMGEKLQPDSVAYNIFIHHFCKQGKISSAFR 580

Query: 326 LLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTL 385
           +LK+M   GC  +  TY  L LG    N + E          L+   K +  +P + T  
Sbjct: 581 VLKDMEKKGCHKSLETYNSLILGLGIKNQIFEIH-------GLMDEMKEKGISPNICTYN 633

Query: 386 SIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVK 428
           + I+   E   V +A NL +E+ + N     F +  LI+A+ K
Sbjct: 634 TAIQYLCEGEKVEDATNLLDEMMQKNIAPNVFSFKYLIEAFCK 676



 Score = 55.8 bits (133), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 65/284 (22%), Positives = 121/284 (42%), Gaps = 30/284 (10%)

Query: 192 KRSEVEPNEVSYCI-LATAHAVARLYTVAETYVEA-------LEKSMTGNNWSTLDVLII 243
           KR    P+E S+ I L     +AR+   A+ + E        L  S+     S+L  ++ 
Sbjct: 24  KRIFSSPSEESHGISLDATPTIARILVRAKMHEEIQELHNLILSSSIQKTKLSSLLSVVS 83

Query: 244 LYGYLAKGKDLERIWATVQ----ELPNVRSKSYV--LAIEAFGRIAQVSRAEELWLEMQS 297
           ++   AK   +++ +   Q      P  +   Y+  L +E+  +  +V     L+ +M  
Sbjct: 84  IF---AKSNHIDKAFPQFQLVRSRFPENKPSVYLYNLLLESCIKERRVEFVSWLYKDMVL 140

Query: 298 VKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEE 357
                 T  +N +I   C +  +D A  L  EM   GCKPN  T+  L  G  K+ L ++
Sbjct: 141 CGIAPQTYTFNLLIRALCDSSCVDAARELFDEMPEKGCKPNEFTFGILVRGYCKAGLTDK 200

Query: 358 GFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTF 417
                  G++L+   +     P      +I+  F  +G   ++E + E++++        
Sbjct: 201 -------GLELLNAMESFGVLPNKVIYNTIVSSFCREGRNDDSEKMVEKMREEGLVPDIV 253

Query: 418 VYNTLIKAYVK-AKINDPNLLRRMI-----LGGARPDAETYSLL 455
            +N+ I A  K  K+ D + +   +     LG  RP++ TY+L+
Sbjct: 254 TFNSRISALCKEGKVLDASRIFSDMELDEYLGLPRPNSITYNLM 297



 Score = 45.8 bits (107), Expect = 0.042,   Method: Compositional matrix adjust.
 Identities = 57/228 (25%), Positives = 98/228 (42%), Gaps = 23/228 (10%)

Query: 210 HAVARLYTVAETYVEALEKSMTGNN-------WSTLDVLIILYGYLAKGKDL--ERIWAT 260
           H  A L  +  +Y+  ++ S+  NN       +STL   +   G  A+ K+L  E +   
Sbjct: 495 HGSAALGNLGNSYIGLVDDSLIENNCLPDLITYSTLLNGLCKAGRFAEAKNLFAEMMGEK 554

Query: 261 VQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFI 320
           +Q  P+  S +Y + I  F +  ++S A  +  +M+     K+ E YNS+I        I
Sbjct: 555 LQ--PD--SVAYNIFIHHFCKQGKISSAFRVLKDMEKKGCHKSLETYNSLILGLGIKNQI 610

Query: 321 DKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPW 380
            +  GL+ EM   G  PN  TY        +   VE+    L+  M+       ++  P 
Sbjct: 611 FEIHGLMDEMKEKGISPNICTYNTAIQYLCEGEKVEDATNLLDEMMQ-------KNIAPN 663

Query: 381 LETTLSIIEIFAEKGDVGNAENLFEELKKANYTK---YTFVYNTLIKA 425
           + +   +IE F +  D   A+ +FE        K   Y+ ++N L+ A
Sbjct: 664 VFSFKYLIEAFCKVPDFDMAQEVFETAVSICGQKEGLYSLMFNELLAA 711



 Score = 39.7 bits (91), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 68/306 (22%), Positives = 118/306 (38%), Gaps = 71/306 (23%)

Query: 90  KDYQNELLYNNLVIACL-DKGVIKLSLEYMKKMRV--------LGHSISYLVFNRLIILN 140
           K Y  + +  N+++  L   G +  ++E +K MRV        LG+S   LV + LI  N
Sbjct: 460 KGYGLDTVTCNIIVDGLCGSGELDKAIEIVKGMRVHGSAALGNLGNSYIGLVDDSLIENN 519

Query: 141 SSP---------------GRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLM 185
             P               GR     N+  +M  +K+ P    ++I +        I    
Sbjct: 520 CLPDLITYSTLLNGLCKAGRFAEAKNLFAEMMGEKLQPDSVAYNIFIHHFCKQGKISSAF 579

Query: 186 KVYSDMKRSEVEPNEVSYCILATAHAVA-RLYTVAETYVEALEKSMTGNNWSTLDVLIIL 244
           +V  DM++     +  +Y  L     +  +++ +     E  EK ++  N  T +  I  
Sbjct: 580 RVLKDMEKKGCHKSLETYNSLILGLGIKNQIFEIHGLMDEMKEKGIS-PNICTYNTAI-- 636

Query: 245 YGYLAKGKDLERIWATVQEL------PNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSV 298
             YL +G+ +E     + E+      PNV S  Y+  IEAF ++     A+E++    S+
Sbjct: 637 -QYLCEGEKVEDATNLLDEMMQKNIAPNVFSFKYL--IEAFCKVPDFDMAQEVFETAVSI 693

Query: 299 -------------------KQLKATEQ---------------YNSVISVYCKNGFIDKAS 324
                              + LKATE                Y  ++   CK   ++ AS
Sbjct: 694 CGQKEGLYSLMFNELLAAGQLLKATELLEAVLDRGFELGTFLYKDLVESLCKKDELEVAS 753

Query: 325 GLLKEM 330
           G+L +M
Sbjct: 754 GILHKM 759


>gi|357123295|ref|XP_003563347.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g18940-like [Brachypodium distachyon]
          Length = 800

 Score = 74.7 bits (182), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 72/309 (23%), Positives = 129/309 (41%), Gaps = 55/309 (17%)

Query: 87  CIPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRR 146
           C P    N + +N ++  C  +G+       +++M+  G  +    FN LI      G R
Sbjct: 429 CTP----NRVTWNTMLAVCGKRGMEGYVTRVLERMKSCGVELCRDTFNTLISAYGRCGSR 484

Query: 147 KTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCIL 206
                +  +M A    P ++T++ L+ + +   +      + + MK    +PN++SY +L
Sbjct: 485 ANAFKMYDEMTAAGFTPCLTTYNALLSVLSRQGDWTAAQSIINKMKNEGFKPNDMSYSLL 544

Query: 207 ATAHAVARLYTVAETYVEALEKSMTGN----NWSTLDVLIILYGYLAKGKDLERIWATVQ 262
              HA           +EA+EK +       +W  L  L+I      K + LE I    Q
Sbjct: 545 LQCHAKGG----NAAGIEAIEKEVYEGTVFPSWVILRTLVISN---FKCRRLEGIERAFQ 597

Query: 263 EL------PNV-----------RSKSYVLAIEAFGRIAQ----------------VSRAE 289
           E+      P++           ++  Y  A E F  I Q                 +++ 
Sbjct: 598 EVMARGHKPDLVIFNSMLSMYAKNGMYRKAGEMFDSIKQGGLSPDLITYNSMMDMYAKSN 657

Query: 290 ELWLEMQSVKQLKATE------QYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYR 343
           E W   + +K+LK ++       YN+V++ +CK G I +A  +L EM  +G +P  +TY 
Sbjct: 658 ESWEAEKILKRLKTSQLKPDVVSYNTVMNGFCKQGLIKEAQRILSEMIADGVRPCVVTY- 716

Query: 344 HLALGCFKS 352
           H  +G + S
Sbjct: 717 HTLVGGYAS 725



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 54/191 (28%), Positives = 93/191 (48%), Gaps = 17/191 (8%)

Query: 239 DVLIILYGYLAKGKDLERIWATVQEL------PNVRSKSYVLAIEAFGRIAQVSRAEELW 292
           +V++ +YG +  G+   +I A ++E+      P+  + S V+A  A GR   V  A   +
Sbjct: 226 NVMLDVYGRM--GRSWPQIVAMLEEMRAAGVEPDGFTASTVIA--ACGRDGLVDEAVAFF 281

Query: 293 LEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKS 352
            +++S   +     YN+++ V+ K G   +A  +LKEM  +GCKP+A+TY  LA    ++
Sbjct: 282 EDLKSRGHVPCVVTYNALLQVFGKAGNYMEALRVLKEMEESGCKPDAVTYNELAGSYARA 341

Query: 353 NLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANY 412
              EE  K L+       T   +   P   T  +I+  +   G V  A  LF+ +KK  +
Sbjct: 342 GFYEEAAKCLD-------TMVSKGILPNAFTYNTIMTAYGNAGKVDEALALFDWMKKNGF 394

Query: 413 TKYTFVYNTLI 423
             Y   YN ++
Sbjct: 395 IPYVNTYNLIL 405



 Score = 69.3 bits (168), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 83/368 (22%), Positives = 160/368 (43%), Gaps = 23/368 (6%)

Query: 98  YNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRR-KTIPNILRQM 156
           Y  ++ A   +G  + +LE   +++  G + +++++N ++ +    GR    I  +L +M
Sbjct: 190 YTTVLHALSHEGRYERALELFAELKREGVAPTHVMYNVMLDVYGRMGRSWPQIVAMLEEM 249

Query: 157 KADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLY 216
           +A  V P   T   ++     D  ++  +  + D+K     P  V+Y  L      A  Y
Sbjct: 250 RAAGVEPDGFTASTVIAACGRDGLVDEAVAFFEDLKSRGHVPCVVTYNALLQVFGKAGNY 309

Query: 217 TVAETYVEALEKSMTGNNWSTLDVLIILY---GYLAKGKDLERIWATVQELPNVRSKSYV 273
             A   ++ +E+S    +  T + L   Y   G+  +         +   LPN  + +Y 
Sbjct: 310 MEALRVLKEMEESGCKPDAVTYNELAGSYARAGFYEEAAKCLDTMVSKGILPN--AFTYN 367

Query: 274 LAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMN 333
             + A+G   +V  A  L+  M+    +     YN ++ +  K    +    +L EMS +
Sbjct: 368 TIMTAYGNAGKVDEALALFDWMKKNGFIPYVNTYNLILGMLGKKSRFNVMLEMLGEMSRS 427

Query: 334 GCKPNAITYRHLALGCFKSNLVEEGF--KALELGMKLITTKKVRSSTPWLETTLSIIEIF 391
           GC PN +T+  +   C K  +  EG+  + LE  MK    +  R      +T  ++I  +
Sbjct: 428 GCTPNRVTWNTMLAVCGKRGM--EGYVTRVLER-MKSCGVELCR------DTFNTLISAY 478

Query: 392 AEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKIND----PNLLRRMILGGARP 447
              G   NA  +++E+  A +T     YN L+   V ++  D     +++ +M   G +P
Sbjct: 479 GRCGSRANAFKMYDEMTAAGFTPCLTTYNALLS--VLSRQGDWTAAQSIINKMKNEGFKP 536

Query: 448 DAETYSLL 455
           +  +YSLL
Sbjct: 537 NDMSYSLL 544



 Score = 59.3 bits (142), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 45/197 (22%), Positives = 85/197 (43%), Gaps = 10/197 (5%)

Query: 265 PNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNG-FIDKA 323
           P +  ++Y   + A     +  RA EL+ E++          YN ++ VY + G    + 
Sbjct: 183 PGLDVRAYTTVLHALSHEGRYERALELFAELKREGVAPTHVMYNVMLDVYGRMGRSWPQI 242

Query: 324 SGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLET 383
             +L+EM   G +P+  T   +   C +  LV+E     E         K R   P + T
Sbjct: 243 VAMLEEMRAAGVEPDGFTASTVIAACGRDGLVDEAVAFFE-------DLKSRGHVPCVVT 295

Query: 384 TLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKIND--PNLLRRMI 441
             +++++F + G+   A  + +E++++        YN L  +Y +A   +     L  M+
Sbjct: 296 YNALLQVFGKAGNYMEALRVLKEMEESGCKPDAVTYNELAGSYARAGFYEEAAKCLDTMV 355

Query: 442 LGGARPDAETYSLLKLA 458
             G  P+A TY+ +  A
Sbjct: 356 SKGILPNAFTYNTIMTA 372



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 69/333 (20%), Positives = 140/333 (42%), Gaps = 15/333 (4%)

Query: 100 NLVIACLDK-GVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKA 158
           NL++  L K     + LE + +M   G + + + +N ++ +    G    +  +L +MK+
Sbjct: 402 NLILGMLGKKSRFNVMLEMLGEMSRSGCTPNRVTWNTMLAVCGKRGMEGYVTRVLERMKS 461

Query: 159 DKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTV 218
             V     TF+ L+       +     K+Y +M  +   P   +Y  L +  +    +T 
Sbjct: 462 CGVELCRDTFNTLISAYGRCGSRANAFKMYDEMTAAGFTPCLTTYNALLSVLSRQGDWTA 521

Query: 219 AETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQE---LPN-VRSKSYVL 274
           A++ +  ++      N  +  +L+  +        +E I   V E    P+ V  ++ V+
Sbjct: 522 AQSIINKMKNEGFKPNDMSYSLLLQCHAKGGNAAGIEAIEKEVYEGTVFPSWVILRTLVI 581

Query: 275 AIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNG 334
           +     R+  + RA   + E+ +         +NS++S+Y KNG   KA  +   +   G
Sbjct: 582 SNFKCRRLEGIERA---FQEVMARGHKPDLVIFNSMLSMYAKNGMYRKAGEMFDSIKQGG 638

Query: 335 CKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEK 394
             P+ ITY  +     KSN   E  K L    K + T +++   P + +  +++  F ++
Sbjct: 639 LSPDLITYNSMMDMYAKSNESWEAEKIL----KRLKTSQLK---PDVVSYNTVMNGFCKQ 691

Query: 395 GDVGNAENLFEELKKANYTKYTFVYNTLIKAYV 427
           G +  A+ +  E+           Y+TL+  Y 
Sbjct: 692 GLIKEAQRILSEMIADGVRPCVVTYHTLVGGYA 724


>gi|225442663|ref|XP_002279821.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g16010-like [Vitis vinifera]
          Length = 725

 Score = 74.7 bits (182), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 60/229 (26%), Positives = 107/229 (46%), Gaps = 13/229 (5%)

Query: 231 TGNNWSTLDVLIILYGYLAKGKDL-ERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAE 289
           T N ++++ ++++  G+  K  +L   +      LP+  + S ++A  AFG++ +   A 
Sbjct: 193 TSNTYNSMILMLMQEGHHEKVHELYNEMCNEGDCLPDTVTYSALIA--AFGKLGRDDSAI 250

Query: 290 ELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGC 349
            L+ EM+        + Y +++ +Y K G ++KA GL++EM   GC     TY  L  G 
Sbjct: 251 SLFDEMKENGLHPTAKIYTTILGIYFKLGRVEKALGLVQEMKEKGCALTVYTYTELIKGV 310

Query: 350 FKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKK 409
            K+  VEE +      +K           P +    ++I +  + G + +A  LFEE++ 
Sbjct: 311 GKAGKVEEAYSIFMNMLK-------EGCKPDVVLINNLINLLGKAGRLADAIKLFEEMES 363

Query: 410 ANYTKYTFVYNTLIKAYVKAKINDPNLL---RRMILGGARPDAETYSLL 455
              T     YNT+IKA  ++K           +M   G  P + TYS+L
Sbjct: 364 LQCTPNVVTYNTVIKALFESKARASEAFLWYEKMKENGVVPSSFTYSIL 412



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 76/353 (21%), Positives = 144/353 (40%), Gaps = 19/353 (5%)

Query: 109 GVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTF 168
           G ++ +L  +++M+  G +++   +  LI      G+ +   +I   M  +   P V   
Sbjct: 279 GRVEKALGLVQEMKEKGCALTVYTYTELIKGVGKAGKVEEAYSIFMNMLKEGCKPDVVLI 338

Query: 169 HILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSY--CILATAHAVARLYTVAETYVEAL 226
           + L+ +      +   +K++ +M+  +  PN V+Y   I A   + AR    +E ++   
Sbjct: 339 NNLINLLGKAGRLADAIKLFEEMESLQCTPNVVTYNTVIKALFESKAR---ASEAFLWYE 395

Query: 227 EKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVR----SKSYVLAIEAFGRI 282
           +    G   S+    I++ G+  K   +E+    ++E+          +Y   I A G+ 
Sbjct: 396 KMKENGVVPSSFTYSILIDGF-CKTNRVEKALLLLEEMDEKGFAPCPAAYCSLINALGKA 454

Query: 283 AQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITY 342
            +   A EL+ E++      +   Y  +I    K G + +A  L  EM   GC P+   Y
Sbjct: 455 KRYEAANELFQELRENCGYSSARVYAVMIKHLGKCGRLSEAVDLFNEMKKLGCNPDVYAY 514

Query: 343 RHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAEN 402
             L  G  +  + +E          L+ T +    TP L +   I+  FA  G    A  
Sbjct: 515 NALMSGMVRVGMTDEAH-------SLLRTMEENGCTPDLNSHNIILNGFARTGGPKGAIE 567

Query: 403 LFEELKKANYTKYTFVYNTLIKAYVKAKIND--PNLLRRMILGGARPDAETYS 453
           +F  +K +        YNT++    +A + +    L++ M   G   D  TYS
Sbjct: 568 MFTRMKNSKIKPDVVSYNTVLGCLSRAGMFEEAAKLMKEMNSKGFEYDLITYS 620



 Score = 58.9 bits (141), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 67/313 (21%), Positives = 129/313 (41%), Gaps = 23/313 (7%)

Query: 125 GHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMK--IEANDHNIE 182
           G     ++ N LI L    GR      +  +M++ +  P+V T++ ++K   E+     E
Sbjct: 330 GCKPDVVLINNLINLLGKAGRLADAIKLFEEMESLQCTPNVVTYNTVIKALFESKARASE 389

Query: 183 GLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLI 242
             +  Y  MK + V P+  +Y IL            A   +E +++       +    LI
Sbjct: 390 AFL-WYEKMKENGVVPSSFTYSILIDGFCKTNRVEKALLLLEEMDEKGFAPCPAAYCSLI 448

Query: 243 ILYGYLAKGKDLERIWATVQELPN----VRSKSYVLAIEAFGRIAQVSRAEELWLEMQSV 298
                L K K  E      QEL        ++ Y + I+  G+  ++S A +L+ EM+ +
Sbjct: 449 ---NALGKAKRYEAANELFQELRENCGYSSARVYAVMIKHLGKCGRLSEAVDLFNEMKKL 505

Query: 299 KQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEG 358
                   YN+++S   + G  D+A  LL+ M  NGC P+  ++          N++  G
Sbjct: 506 GCNPDVYAYNALMSGMVRVGMTDEAHSLLRTMEENGCTPDLNSH----------NIILNG 555

Query: 359 FK---ALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKY 415
           F      +  +++ T  K     P + +  +++   +  G    A  L +E+    +   
Sbjct: 556 FARTGGPKGAIEMFTRMKNSKIKPDVVSYNTVLGCLSRAGMFEEAAKLMKEMNSKGFEYD 615

Query: 416 TFVYNTLIKAYVK 428
              Y+++++A  K
Sbjct: 616 LITYSSILEAVGK 628


>gi|356560325|ref|XP_003548443.1| PREDICTED: pentatricopeptide repeat-containing protein At3g61520,
           mitochondrial-like [Glycine max]
          Length = 746

 Score = 74.7 bits (182), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 87/365 (23%), Positives = 142/365 (38%), Gaps = 44/365 (12%)

Query: 94  NELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNIL 153
           N + YN L+      G    + E  ++M   G   + +  N L+      GR        
Sbjct: 392 NTVTYNCLIDGFFKAGNFDRAHELFRQMNEEGVQPNVITLNTLVDGLCKHGRVHRAVEFF 451

Query: 154 RQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVA 213
            +MK   +  + +T+  L+      +NI   M+ + +M  S   P+ V Y  L +   +A
Sbjct: 452 NEMKGKGLKGNAATYTALISAFCGVNNINRAMQCFEEMLSSGCSPDAVVYYSLISGLCIA 511

Query: 214 RLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSKSYV 273
                A   V  L+ +    + S  +VLI  +    K K LER++               
Sbjct: 512 GRMNDASVVVSKLKLAGFSLDRSCYNVLISGF---CKKKKLERVY--------------- 553

Query: 274 LAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMN 333
                           EL  EM+       T  YN++IS   K G    AS ++++M   
Sbjct: 554 ----------------ELLTEMEETGVKPDTITYNTLISYLGKTGDFATASKVMEKMIKE 597

Query: 334 GCKPNAITYRHLALG-CFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFA 392
           G +P+ +TY  +    C K N V+EG K      ++ +T KV  +T        +I+   
Sbjct: 598 GLRPSVVTYGAIIHAYCSKKN-VDEGMKIFG---EMCSTSKVPPNTVIYNI---LIDALC 650

Query: 393 EKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKI--NDPNLLRRMILGGARPDAE 450
              DV  A +L E++K       T  YN ++K     K+      L+ RM+    RPD  
Sbjct: 651 RNNDVDRAISLMEDMKVKRVRPNTTTYNAILKGVRDKKMLHKAFELMDRMVEEACRPDYI 710

Query: 451 TYSLL 455
           T  +L
Sbjct: 711 TMEVL 715



 Score = 38.9 bits (89), Expect = 6.3,   Method: Compositional matrix adjust.
 Identities = 42/185 (22%), Positives = 73/185 (39%), Gaps = 14/185 (7%)

Query: 279 FGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMN----- 333
            GR   + R  EL  EM+  K   +   +  +++  CK   ID+A  +   +        
Sbjct: 291 LGRGRDIKRMNELLAEMEKRKIRPSVVTFGILVNHLCKARRIDEALQVFDRLRGKGGSNW 350

Query: 334 -GCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFA 392
            G +P+ + +  L  G  K    E+G   LE  MK+    +     P   T   +I+ F 
Sbjct: 351 VGVEPDVVLFNTLIDGLCKVGKEEDGLSLLE-EMKMGNINR-----PNTVTYNCLIDGFF 404

Query: 393 EKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVK-AKINDP-NLLRRMILGGARPDAE 450
           + G+   A  LF ++ +          NTL+    K  +++        M   G + +A 
Sbjct: 405 KAGNFDRAHELFRQMNEEGVQPNVITLNTLVDGLCKHGRVHRAVEFFNEMKGKGLKGNAA 464

Query: 451 TYSLL 455
           TY+ L
Sbjct: 465 TYTAL 469


>gi|255661132|gb|ACU25735.1| pentatricopeptide repeat-containing protein [Verbena perennis]
          Length = 426

 Score = 74.7 bits (182), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 75/322 (23%), Positives = 149/322 (46%), Gaps = 22/322 (6%)

Query: 98  YNNLVIACLDKGVIKLSLEYMKKM---RVLGHSISYLVFNRLIILNSSPGRRKTIPNILR 154
           Y+ L+     +G+   +L +++KM   RV G  + Y   + LI L+          +I  
Sbjct: 12  YSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLY---SNLIELSRKLCDYSKAISIFS 68

Query: 155 QMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVAR 214
           ++K     P +  ++ ++ +            + S+M+ + V PN  SY  L T +   R
Sbjct: 69  RLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTASYSTLLTMYVENR 128

Query: 215 LYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQEL---PNVRSKS 271
            +  A +    + +     + +T +++I +YG L   K+ ++++  ++++   PNV S +
Sbjct: 129 KFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYN 188

Query: 272 YVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMS 331
            +L +  +G       A  L+  MQ     +    YNS++ +Y K    +KA+ L++EM 
Sbjct: 189 TLLRV--YGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQ 246

Query: 332 MNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTL--SIIE 389
             G +PN+ITY         S ++    K  +L    +  +K+RSS   ++  L  ++I 
Sbjct: 247 NRGIEPNSITY---------STIISIWGKVGKLDRAAMLFQKLRSSGVDIDQVLYQTMIV 297

Query: 390 IFAEKGDVGNAENLFEELKKAN 411
            +   G V +A+ L  ELK+ +
Sbjct: 298 AYERAGLVAHAKRLLHELKRPD 319



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 75/370 (20%), Positives = 161/370 (43%), Gaps = 20/370 (5%)

Query: 65  YSYLLEFTIKNHGISQGEKLFCCIPKD-YQNELLYNNLVIACLDKG-VIKLSLEYMKKMR 122
           YS L+E + K    S+   +F  + +  +  +L+  N +I    K  + + +   + +MR
Sbjct: 47  YSNLIELSRKLCDYSKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMR 106

Query: 123 VLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIE 182
             G + +   ++ L+ +     +     ++  +M+  K    ++T +I++ +       +
Sbjct: 107 TAGVTPNTASYSTLLTMYVENRKFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAK 166

Query: 183 GLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLI 242
              K++  M++  +EPN VSY  L   +  A L+  A      +++     N  T + ++
Sbjct: 167 EADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMM 226

Query: 243 ILYGYLAKGKDLERIWATVQELPN----VRSKSYVLAIEAFGRIAQVSRAEELWLEMQSV 298
           ++YG   K  + E+    +QE+ N      S +Y   I  +G++ ++ RA  L+ +++S 
Sbjct: 227 MIYG---KTLEHEKANNLIQEMQNRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSS 283

Query: 299 KQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEG 358
                   Y ++I  Y + G +  A  LL E+      P  I    LA     +  +EE 
Sbjct: 284 GVDIDQVLYQTMIVAYERAGLVAHAKRLLHELKRPDNIPRDIAIHILA----GAGRIEE- 338

Query: 359 FKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFV 418
             A  +  + I   +V+     +     +I +F++    GN   +F++++   Y   + V
Sbjct: 339 --ATWVFRQAIDAGEVKD----IXVFERMIHLFSKYKKYGNVVEVFDKMRGLGYFPDSNV 392

Query: 419 YNTLIKAYVK 428
              ++ AY K
Sbjct: 393 IALILNAYGK 402



 Score = 41.6 bits (96), Expect = 0.85,   Method: Compositional matrix adjust.
 Identities = 32/125 (25%), Positives = 56/125 (44%), Gaps = 7/125 (5%)

Query: 307 YNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGM 366
           YN++I+V+ K     +A  L+ EM   G  PN  +Y  L        +  E  K LE   
Sbjct: 82  YNAMINVFGKAKLFREARSLISEMRTAGVTPNTASYSTLL------TMYVENRKFLEALS 135

Query: 367 KLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAY 426
                ++++     L T   +I+++ + G    A+ LF  ++K         YNTL++ Y
Sbjct: 136 VFAEMREIKCLLD-LTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVY 194

Query: 427 VKAKI 431
             A++
Sbjct: 195 GDAEL 199


>gi|449438016|ref|XP_004136786.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g41720-like [Cucumis sativus]
          Length = 707

 Score = 74.7 bits (182), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 76/311 (24%), Positives = 139/311 (44%), Gaps = 26/311 (8%)

Query: 131 LVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSD 190
           + F  +I L S  G+ +    +   M A+ + P++ +++ L+   A+    +    V+ +
Sbjct: 208 VTFTSIIHLYSVRGQIEDCKAVFSTMLAEGIKPNIVSYNALISAYASHGMDKEAFSVFDE 267

Query: 191 MKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYG---Y 247
           MKRS   P+ VSY  L +    ++    A    + ++++    N  + + L+  YG   Y
Sbjct: 268 MKRSGFCPDVVSYTSLISTFGRSQQPARAREVFDMMKRNKCKPNLVSYNALMDAYGSNGY 327

Query: 248 LAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKA---- 303
           L +  D+ R        PNV S   +LA  A GR  Q    + +     S  +L+     
Sbjct: 328 LPQAVDILREMEQDGIHPNVVSICTLLA--ACGRFGQKVNIDSVL----SAAELRGIHLN 381

Query: 304 TEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEG---FK 360
           T   NS I  Y   G  +KA  L + M     KP+++T+  L  GC + +  EE    FK
Sbjct: 382 TIACNSAIGSYMNIGEYEKAINLYRSMENKTTKPDSVTFTILISGCCRMSKYEEALCFFK 441

Query: 361 ALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYN 420
            + L +++  + ++ SS         +I  ++++G +  AE+LF  LK +        Y 
Sbjct: 442 EM-LDLRIPLSSEIYSS---------MICAYSKQGQLVKAESLFNSLKGSGCCPDLVTYT 491

Query: 421 TLIKAYVKAKI 431
            +I AY  +++
Sbjct: 492 AMINAYSASEM 502



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 77/353 (21%), Positives = 139/353 (39%), Gaps = 52/353 (14%)

Query: 43  KRALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQGEKLFC------CIPK-DYQNE 95
           +  ++V +W+  +R Y  +   Y+ ++    +++ I Q   LF       C P  +  N 
Sbjct: 11  EHCVQVFDWMKNQRNYCARNDIYNMMIRLHARHNRIDQARGLFFEMQKWRCKPDVETYNA 70

Query: 96  LL------------------------------YNNLVIACLDKGVIKLSLEYMKKMRVLG 125
           L+                              +NNL+ AC   G  + +L   KKM   G
Sbjct: 71  LINAHGRAGQWRWATNIMEDMLRAAIPPSRSTFNNLINACGSCGNWREALRVCKKMTDNG 130

Query: 126 HSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTF----HILMKIEANDHNI 181
                +  N ++    S  +     +    MK   + P  +T     H L+K++     I
Sbjct: 131 VGPDLVTHNIVLSAYKSGAQYSKALSYFELMKGTNIRPDTTTLNIVIHCLIKVKQYGQAI 190

Query: 182 EGLMKVYSDM--KRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLD 239
           E    ++S M  KRSE  P+ V++  +   ++V       +     +       N  + +
Sbjct: 191 E----IFSSMREKRSECRPDVVTFTSIIHLYSVRGQIEDCKAVFSTMLAEGIKPNIVSYN 246

Query: 240 VLIILYGYLAKGKDLERIWATVQE---LPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQ 296
            LI  Y      K+   ++  ++     P+V   SY   I  FGR  Q +RA E++  M+
Sbjct: 247 ALISAYASHGMDKEAFSVFDEMKRSGFCPDV--VSYTSLISTFGRSQQPARAREVFDMMK 304

Query: 297 SVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGC 349
             K       YN+++  Y  NG++ +A  +L+EM  +G  PN ++   L   C
Sbjct: 305 RNKCKPNLVSYNALMDAYGSNGYLPQAVDILREMEQDGIHPNVVSICTLLAAC 357



 Score = 62.4 bits (150), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 73/335 (21%), Positives = 143/335 (42%), Gaps = 24/335 (7%)

Query: 94  NELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIIL---NSSPGRRKTIP 150
           N + YN L+ A    G+ K +     +M+  G     + +  LI     +  P R + + 
Sbjct: 241 NIVSYNALISAYASHGMDKEAFSVFDEMKRSGFCPDVVSYTSLISTFGRSQQPARAREVF 300

Query: 151 NILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAH 210
           ++   MK +K  P++ +++ LM    ++  +   + +  +M++  + PN VS C L  A 
Sbjct: 301 DM---MKRNKCKPNLVSYNALMDAYGSNGYLPQAVDILREMEQDGIHPNVVSICTLLAAC 357

Query: 211 AVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSK 270
                    ++ + A E  + G + +T+     +  Y+  G + E+     + + N  +K
Sbjct: 358 GRFGQKVNIDSVLSAAE--LRGIHLNTIACNSAIGSYMNIG-EYEKAINLYRSMENKTTK 414

Query: 271 ----SYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGL 326
               ++ + I    R+++   A   + EM  ++   ++E Y+S+I  Y K G + KA  L
Sbjct: 415 PDSVTFTILISGCCRMSKYEEALCFFKEMLDLRIPLSSEIYSSMICAYSKQGQLVKAESL 474

Query: 327 LKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKAL--ELGMKLITTKKVRSST------ 378
              +  +GC P+ +TY  + +  + ++ + E   AL  E+    I    +  S       
Sbjct: 475 FNSLKGSGCCPDLVTYTAM-INAYSASEMWEKVCALYQEMEANNIQLDSIACSALMKAFN 533

Query: 379 --PWLETTLSIIEIFAEKGDVGNAENLFEELKKAN 411
                   L + EI  EKG   N  N FE L   +
Sbjct: 534 KGNQASNVLILAEIMKEKGIPFNDANFFEMLSACS 568



 Score = 40.4 bits (93), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 39/173 (22%), Positives = 68/173 (39%), Gaps = 7/173 (4%)

Query: 258 WATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKN 317
           W   Q     R+  Y + I    R  ++ +A  L+ EMQ  +     E YN++I+ + + 
Sbjct: 19  WMKNQRNYCARNDIYNMMIRLHARHNRIDQARGLFFEMQKWRCKPDVETYNALINAHGRA 78

Query: 318 GFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSS 377
           G    A+ ++++M      P+  T+ +L   C       E  +      K +T   V   
Sbjct: 79  GQWRWATNIMEDMLRAAIPPSRSTFNNLINACGSCGNWREALRVC----KKMTDNGV--- 131

Query: 378 TPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAK 430
            P L T   ++  +        A + FE +K  N    T   N +I   +K K
Sbjct: 132 GPDLVTHNIVLSAYKSGAQYSKALSYFELMKGTNIRPDTTTLNIVIHCLIKVK 184


>gi|255557937|ref|XP_002519997.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223540761|gb|EEF42321.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 1429

 Score = 74.7 bits (182), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 92/424 (21%), Positives = 168/424 (39%), Gaps = 58/424 (13%)

Query: 43  KRALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQGEKLFCCIPKDYQNEL-LYNNL 101
           +RALEV EW+     Y P     + +L    K +  +   ++F        N + +YN +
Sbjct: 157 QRALEVFEWLNLRHWYSPNARMLATILAVLGKANQEALAVEIFIRAESTVDNTVQVYNAM 216

Query: 102 VIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNI----LRQMK 157
           +      G        +  MR  G     + FN LI  N+        PN+    L +++
Sbjct: 217 MGVYARTGRFNKVQGMLDLMRERGCEPDLVSFNTLI--NARLKAGAMTPNVAIELLNEVR 274

Query: 158 ADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYT 217
              + P + T++ L+   + + N+E  +KV+ DM+    +P+  +Y  + + +       
Sbjct: 275 RSGLRPDIITYNTLISACSRESNLEEAVKVFDDMEAHYCQPDLWTYNAMISVYGRCGFSG 334

Query: 218 VAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSKSYVLAIE 277
            AE   + LE                  GY                 P+  + +Y   + 
Sbjct: 335 KAEQLFKELESK----------------GYF----------------PD--AVTYNSLLY 360

Query: 278 AFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKP 337
           AF R   V + +E+  EM  +  ++    YN++I +Y K G    A  L ++M ++G  P
Sbjct: 361 AFAREGNVDKVKEICNEMVQMGFIRDEMTYNTIIHMYGKQGQHGLALQLYRDMKLSGRTP 420

Query: 338 NAITYRHLALGCFKSNLVEEGF----KALELGMKLITTKKVRSSTPWLETTLSIIEIFAE 393
           +AITY  L     K+N + E      + L +G+K           P L T  ++I  +A 
Sbjct: 421 DAITYTVLIDSLGKANKMVEAANVMSEMLNIGVK-----------PTLRTYSALICGYAR 469

Query: 394 KGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVK--AKINDPNLLRRMILGGARPDAET 451
            G    AE  F+ ++++        Y+ ++  +++         L R M+  G  PD   
Sbjct: 470 AGQRLEAEETFDCMRRSGIRPDQLAYSVMLDVFLRFDEATKAMMLYREMVRDGITPDPTV 529

Query: 452 YSLL 455
           Y  +
Sbjct: 530 YGAM 533



 Score = 49.3 bits (116), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 50/210 (23%), Positives = 94/210 (44%), Gaps = 15/210 (7%)

Query: 146  RKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCI 205
            RKT+  I +++K D + P   T++ L+ +   DH  E    +  +M+R  +EP   +Y  
Sbjct: 927  RKTV-QIYQRIKEDGLQPDEDTYNTLIVMYCRDHRPEEGCSLMHEMRRIGLEPKLDTYKS 985

Query: 206  LATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQEL- 264
            L  A    +L   AE   E L    +  + S   +++ +Y         E++ + +++  
Sbjct: 986  LIAAFGKQQLVVDAEELFEELLSKGSKLDRSFYHIMMKIYRNSGNHSKAEKLLSMMKDAG 1045

Query: 265  --PNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDK 322
              P + +   ++   ++G   Q   AE++   ++ +    +T  Y+SVI  Y KN   D 
Sbjct: 1046 VEPTIATMHLLMV--SYGSSGQPQEAEKVLTNLKEMGLSLSTLPYSSVIDAYLKNK--DY 1101

Query: 323  ASGLLK--EMSMNGCKPNAITYRHLALGCF 350
            + G+ K  EM   G +P+     H    CF
Sbjct: 1102 SVGIQKLVEMKKEGLEPD-----HRIWTCF 1126



 Score = 49.3 bits (116), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 63/288 (21%), Positives = 116/288 (40%), Gaps = 39/288 (13%)

Query: 206  LATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELP 265
            L  A+A +  Y  A      +   M      T+D +  L   L     LE ++   QE+ 
Sbjct: 776  LIQAYAASGCYEQARAVFNTM---MRDGPSPTVDSINGLLQALIVDGRLEELYVVTQEIQ 832

Query: 266  N----VRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFID 321
            +    +   S +L ++AF R++ ++ A++++  M++         Y  +I + CK   + 
Sbjct: 833  DMGFQISKSSILLILDAFARVSNIAEAKKIYQGMKAAGYFPTMHLYRIMIGLLCKGKRVR 892

Query: 322  KASGLLKEMSMNGCKP-----NAITYRHLALGCFKSN------LVEEGFKA--------- 361
                ++ EM   G +P     N++   +  +  F+        + E+G +          
Sbjct: 893  DVEAMVTEMEEAGFRPDLSIWNSMLRLYTGIDDFRKTVQIYQRIKEDGLQPDEDTYNTLI 952

Query: 362  --------LELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEE-LKKANY 412
                     E G  L+   +     P L+T  S+I  F ++  V +AE LFEE L K + 
Sbjct: 953  VMYCRDHRPEEGCSLMHEMRRIGLEPKLDTYKSLIAAFGKQQLVVDAEELFEELLSKGSK 1012

Query: 413  TKYTFVYNTLIKAYVKAKIND--PNLLRRMILGGARPDAETYSLLKLA 458
               +F Y+ ++K Y  +  +     LL  M   G  P   T  LL ++
Sbjct: 1013 LDRSF-YHIMMKIYRNSGNHSKAEKLLSMMKDAGVEPTIATMHLLMVS 1059



 Score = 42.4 bits (98), Expect = 0.54,   Method: Compositional matrix adjust.
 Identities = 63/298 (21%), Positives = 119/298 (39%), Gaps = 48/298 (16%)

Query: 152 ILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHA 211
           + R+M  D + P  + +  +++    ++ +E + ++  DM+           C +    A
Sbjct: 514 LYREMVRDGITPDPTVYGAMLRNLGRENKVEDIQRIIRDME---------EVCGM-NPQA 563

Query: 212 VARLYTVAETYVEA---LEKSMTGN------NWSTLDVLIILYGYLAKGKDLERIWATVQ 262
           +A +    E Y +A   L  +++G+      N  ++       G  A+  DL      +Q
Sbjct: 564 IASILVKGECYEDAAGMLRLAISGSDEIDSENLLSILSSYSSSGRQAEALDL------LQ 617

Query: 263 ELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLK-------ATEQYNSVISVYC 315
            L    SKS  L  EA   I  + +A++L   ++     +       +   Y S+I    
Sbjct: 618 FLKGHVSKSNQLVAEA--SIVTLCKAKQLDAALKEYNDTREFDWFTGSCTMYESLIQCCE 675

Query: 316 KNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALEL----GMKLITT 371
           +N F  +AS +  +M  NG KP+   YR + L   K    E     ++L    GM     
Sbjct: 676 ENEFTAEASQIFSDMRFNGVKPSKSLYRSMVLMYCKMGFPETAHYLIDLAEIEGMPFDK- 734

Query: 372 KKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKA 429
                    +   +++IE + +      AE+L   L++        V+N LI+AY  +
Sbjct: 735 ---------ISIDVAVIETYGKLKLWQKAESLVGNLRQRCTNVDRKVWNALIQAYAAS 783



 Score = 40.0 bits (92), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 60/288 (20%), Positives = 118/288 (40%), Gaps = 34/288 (11%)

Query: 152  ILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHA 211
            I + MKA    P +  + I++ +      +  +  + ++M+ +   P+      L+  ++
Sbjct: 862  IYQGMKAAGYFPTMHLYRIMIGLLCKGKRVRDVEAMVTEMEEAGFRPD------LSIWNS 915

Query: 212  VARLYTVAETY------VEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELP 265
            + RLYT  + +       + +++     +  T + LI++Y    +    E   + + E+ 
Sbjct: 916  MLRLYTGIDDFRKTVQIYQRIKEDGLQPDEDTYNTLIVMY---CRDHRPEEGCSLMHEMR 972

Query: 266  NV----RSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFID 321
             +    +  +Y   I AFG+   V  AEEL+ E+ S         Y+ ++ +Y  +G   
Sbjct: 973  RIGLEPKLDTYKSLIAAFGKQQLVVDAEELFEELLSKGSKLDRSFYHIMMKIYRNSGNHS 1032

Query: 322  KASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKAL----ELGMKLITTKKVRSS 377
            KA  LL  M   G +P   T   L +    S   +E  K L    E+G+ L       S+
Sbjct: 1033 KAEKLLSMMKDAGVEPTIATMHLLMVSYGSSGQPQEAEKVLTNLKEMGLSL-------ST 1085

Query: 378  TPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKA 425
             P+     S+I+ + +  D         E+KK        ++   I+A
Sbjct: 1086 LPY----SSVIDAYLKNKDYSVGIQKLVEMKKEGLEPDHRIWTCFIRA 1129



 Score = 39.3 bits (90), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 49/266 (18%), Positives = 107/266 (40%), Gaps = 7/266 (2%)

Query: 96  LLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQ 155
           + YN L+ AC  +  ++ +++    M           +N +I +    G       + ++
Sbjct: 283 ITYNTLISACSRESNLEEAVKVFDDMEAHYCQPDLWTYNAMISVYGRCGFSGKAEQLFKE 342

Query: 156 MKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARL 215
           +++    P   T++ L+   A + N++ + ++ ++M +     +E++Y  +   +     
Sbjct: 343 LESKGYFPDAVTYNSLLYAFAREGNVDKVKEICNEMVQMGFIRDEMTYNTIIHMYGKQGQ 402

Query: 216 YTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSK----S 271
           + +A      ++ S    +  T  VLI     L K   +      + E+ N+  K    +
Sbjct: 403 HGLALQLYRDMKLSGRTPDAITYTVLI---DSLGKANKMVEAANVMSEMLNIGVKPTLRT 459

Query: 272 YVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMS 331
           Y   I  + R  Q   AEE +  M+          Y+ ++ V+ +     KA  L +EM 
Sbjct: 460 YSALICGYARAGQRLEAEETFDCMRRSGIRPDQLAYSVMLDVFLRFDEATKAMMLYREMV 519

Query: 332 MNGCKPNAITYRHLALGCFKSNLVEE 357
            +G  P+   Y  +     + N VE+
Sbjct: 520 RDGITPDPTVYGAMLRNLGRENKVED 545


>gi|449523013|ref|XP_004168519.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g41720-like, partial [Cucumis sativus]
          Length = 594

 Score = 74.7 bits (182), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 76/311 (24%), Positives = 139/311 (44%), Gaps = 26/311 (8%)

Query: 131 LVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSD 190
           + F  +I L S  G+ +    +   M A+ + P++ +++ L+   A+    +    V+ +
Sbjct: 113 VTFTSIIHLYSVRGQIEDCKAVFSTMLAEGIKPNIVSYNALISAYASHGMDKEAFSVFDE 172

Query: 191 MKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYG---Y 247
           MKRS   P+ VSY  L +    ++    A    + ++++    N  + + L+  YG   Y
Sbjct: 173 MKRSGFCPDVVSYTSLISTFGRSQQPARAREVFDMMKRNKCKPNLVSYNALMDAYGSNGY 232

Query: 248 LAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKA---- 303
           L +  D+ R        PNV S   +LA  A GR  Q    + +     S  +L+     
Sbjct: 233 LPQAVDILREMEQDGIHPNVVSICTLLA--ACGRFGQKVNIDSVL----SAAELRGIHLN 286

Query: 304 TEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEG---FK 360
           T   NS I  Y   G  +KA  L + M     KP+++T+  L  GC + +  EE    FK
Sbjct: 287 TIACNSAIGSYMNIGEYEKAINLYRSMENKTTKPDSVTFTILISGCCRMSKYEEALCFFK 346

Query: 361 ALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYN 420
            + L +++  + ++ SS         +I  ++++G +  AE+LF  LK +        Y 
Sbjct: 347 EM-LDLRIPLSSEIYSS---------MICAYSKQGQLVKAESLFNSLKGSGCCPDLVTYT 396

Query: 421 TLIKAYVKAKI 431
            +I AY  +++
Sbjct: 397 AMINAYSASEM 407



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 64/261 (24%), Positives = 111/261 (42%), Gaps = 15/261 (5%)

Query: 98  YNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMK 157
           +NNL+ AC   G  + +L   KKM   G     +  N ++    S  +     +    MK
Sbjct: 8   FNNLINACGSCGNWREALRVCKKMTDNGVGPDLVTHNIVLSAYKSGAQYSKALSYFELMK 67

Query: 158 ADKVAPHVSTF----HILMKIEANDHNIEGLMKVYSDM--KRSEVEPNEVSYCILATAHA 211
              + P  +T     H L+K++     IE    ++S M  KRSE  P+ V++  +   ++
Sbjct: 68  GTNIRPDTTTLNIVIHCLIKVKQYGQAIE----IFSSMREKRSECRPDVVTFTSIIHLYS 123

Query: 212 VARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQE---LPNVR 268
           V       +     +       N  + + LI  Y      K+   ++  ++     P+V 
Sbjct: 124 VRGQIEDCKAVFSTMLAEGIKPNIVSYNALISAYASHGMDKEAFSVFDEMKRSGFCPDV- 182

Query: 269 SKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLK 328
             SY   I  FGR  Q +RA E++  M+  K       YN+++  Y  NG++ +A  +L+
Sbjct: 183 -VSYTSLISTFGRSQQPARAREVFDMMKRNKCKPNLVSYNALMDAYGSNGYLPQAVDILR 241

Query: 329 EMSMNGCKPNAITYRHLALGC 349
           EM  +G  PN ++   L   C
Sbjct: 242 EMEQDGIHPNVVSICTLLAAC 262



 Score = 62.4 bits (150), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 73/335 (21%), Positives = 141/335 (42%), Gaps = 24/335 (7%)

Query: 94  NELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIIL---NSSPGRRKTIP 150
           N + YN L+ A    G+ K +     +M+  G     + +  LI     +  P R +   
Sbjct: 146 NIVSYNALISAYASHGMDKEAFSVFDEMKRSGFCPDVVSYTSLISTFGRSQQPARAR--- 202

Query: 151 NILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAH 210
            +   MK +K  P++ +++ LM    ++  +   + +  +M++  + PN VS C L  A 
Sbjct: 203 EVFDMMKRNKCKPNLVSYNALMDAYGSNGYLPQAVDILREMEQDGIHPNVVSICTLLAAC 262

Query: 211 AVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSK 270
                    ++ + A E  + G + +T+     +  Y+  G + E+     + + N  +K
Sbjct: 263 GRFGQKVNIDSVLSAAE--LRGIHLNTIACNSAIGSYMNIG-EYEKAINLYRSMENKTTK 319

Query: 271 ----SYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGL 326
               ++ + I    R+++   A   + EM  ++   ++E Y+S+I  Y K G + KA  L
Sbjct: 320 PDSVTFTILISGCCRMSKYEEALCFFKEMLDLRIPLSSEIYSSMICAYSKQGQLVKAESL 379

Query: 327 LKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKAL--ELGMKLITTKKVRSST------ 378
              +  +GC P+ +TY  + +  + ++ + E   AL  E+    I    +  S       
Sbjct: 380 FNSLKGSGCCPDLVTYTAM-INAYSASEMWEKVCALYQEMEANNIQLDSIACSALMKAFN 438

Query: 379 --PWLETTLSIIEIFAEKGDVGNAENLFEELKKAN 411
                   L + EI  EKG   N  N FE L   +
Sbjct: 439 KGNQASNVLILAEIMKEKGIPFNDANFFEMLSACS 473



 Score = 50.1 bits (118), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 63/307 (20%), Positives = 118/307 (38%), Gaps = 42/307 (13%)

Query: 161 VAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAE 220
           + P  STF+ L+    +  N    ++V   M  + V P+ V++ I+ +A+     Y+ A 
Sbjct: 1   IPPSRSTFNNLINACGSCGNWREALRVCKKMTDNGVGPDLVTHNIVLSAYKSGAQYSKAL 60

Query: 221 TYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFG 280
           +Y E ++ +    + +TL+++I                        ++ K Y  AIE F 
Sbjct: 61  SYFELMKGTNIRPDTTTLNIVIHCL---------------------IKVKQYGQAIEIFS 99

Query: 281 RIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAI 340
            + +  +  E   ++ +         + S+I +Y   G I+    +   M   G KPN +
Sbjct: 100 SMRE--KRSECRPDVVT---------FTSIIHLYSVRGQIEDCKAVFSTMLAEGIKPNIV 148

Query: 341 TYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNA 400
           +Y  L        + +E F   +         K     P + +  S+I  F        A
Sbjct: 149 SYNALISAYASHGMDKEAFSVFD-------EMKRSGFCPDVVSYTSLISTFGRSQQPARA 201

Query: 401 ENLFEELKKANYTKYTFVYNTLIKAYVKAKI--NDPNLLRRMILGGARPD-AETYSLLKL 457
             +F+ +K+         YN L+ AY          ++LR M   G  P+     +LL  
Sbjct: 202 REVFDMMKRNKCKPNLVSYNALMDAYGSNGYLPQAVDILREMEQDGIHPNVVSICTLLAA 261

Query: 458 AEQFQKK 464
             +F +K
Sbjct: 262 CGRFGQK 268


>gi|77556780|gb|ABA99576.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
          Length = 696

 Score = 74.7 bits (182), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 106/490 (21%), Positives = 191/490 (38%), Gaps = 68/490 (13%)

Query: 8   EPVGSAFQSWMREGFPVHRGEIFHSINRLRKLQLNKRALEVMEWVIRERPYRPKELDYSY 67
           E V +  +SW R G   +  E+F  + RL                      RP    Y+ 
Sbjct: 154 ELVCALVESWGRLGLARYAHEVFVQMPRL--------------------GLRPSTAVYNA 193

Query: 68  LLEFTIKNHGISQGEKLFCCIPKD--YQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLG 125
           L+  +++   +      F  +P D    +   YN+LV     +G++  ++  +++M   G
Sbjct: 194 LIAASVRAGAVDTAYLRFQQMPADGCRPDHFTYNSLVHGVCRRGIVDEAVRLVRQMEGEG 253

Query: 126 HSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHIL-------------- 171
              +   +  L+    + GR +    +L +MK   VAP  +T+  L              
Sbjct: 254 IRPNVFTYTMLVDGFCNAGRVEEAFRMLDKMKEKGVAPSEATYRTLVHGVFRCLERDKAY 313

Query: 172 ------MKIEANDHNIEGLMKVYS----DMKRSEVE----PNEVSYCILATAHAVARLYT 217
                 +  E + H       +Y     DM +  VE     +   Y + +TA  +     
Sbjct: 314 RMLSDWLGHETSLHPSACHTMLYCLSKKDMAKEAVEFEKRMSARGYLLDSTAFGIVMSCA 373

Query: 218 V----AETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERI--WATVQELPNVRSK- 270
           +         E L+  +        DV I++   L   K+  +   +     L  + S  
Sbjct: 374 LKCLEVSDLCELLDSFIKNGGNPGFDVYIMVIKSLLNCKNFSKANHYLGHMVLKGLLSSV 433

Query: 271 -SYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKE 329
            SY + I+ F +   V +AEE+  EMQ    L     +N++IS Y K G +  A  +LK 
Sbjct: 434 MSYNMVIDCFVKAGAVDKAEEIVKEMQDKGFLPNLVTFNTLISGYSKLGNVHNAKVVLKM 493

Query: 330 MSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIE 389
           +  +G  P+ IT+  L  G   ++ +++ F   E     +    VR   P  +T   ++ 
Sbjct: 494 LMEHGFMPDIITFTSLIDGLCNTHQLDDAFVCFE----EMAEWGVR---PNAQTYNVLMH 546

Query: 390 IFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKINDP--NLLRRMILGGARP 447
                G V  A +L  ++K    T   + +N LI ++ + +  D   ++   M+  G  P
Sbjct: 547 TLCSAGHVNKAIDLLNKMKIDGVTPDAYSFNALILSFCRMRKVDKAEDIFNDMVRFGVVP 606

Query: 448 DAETY-SLLK 456
           D+ TY SL+K
Sbjct: 607 DSYTYNSLIK 616



 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 89/402 (22%), Positives = 152/402 (37%), Gaps = 49/402 (12%)

Query: 97  LYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQM 156
           +YN L+ A +  G +  +    ++M   G    +  +N L+      G       ++RQM
Sbjct: 190 VYNALIAASVRAGAVDTAYLRFQQMPADGCRPDHFTYNSLVHGVCRRGIVDEAVRLVRQM 249

Query: 157 KADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLY 216
           + + + P+V T+ +L+    N   +E   ++   MK   V P+E +Y  L   H V R  
Sbjct: 250 EGEGIRPNVFTYTMLVDGFCNAGRVEEAFRMLDKMKEKGVAPSEATYRTL--VHGVFRCL 307

Query: 217 ---------------------TVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKG---- 251
                                +   T +  L K          +  +   GYL       
Sbjct: 308 ERDKAYRMLSDWLGHETSLHPSACHTMLYCLSKKDMAKEAVEFEKRMSARGYLLDSTAFG 367

Query: 252 ------------KDL-ERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSV 298
                        DL E + + ++   N     Y++ I++       S+A      M   
Sbjct: 368 IVMSCALKCLEVSDLCELLDSFIKNGGNPGFDVYIMVIKSLLNCKNFSKANHYLGHMVLK 427

Query: 299 KQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEG 358
             L +   YN VI  + K G +DKA  ++KEM   G  PN +T+  L  G  K   V   
Sbjct: 428 GLLSSVMSYNMVIDCFVKAGAVDKAEEIVKEMQDKGFLPNLVTFNTLISGYSKLGNVHNA 487

Query: 359 FKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFV 418
              L++ M+           P + T  S+I+       + +A   FEE+ +         
Sbjct: 488 KVVLKMLME-------HGFMPDIITFTSLIDGLCNTHQLDDAFVCFEEMAEWGVRPNAQT 540

Query: 419 YNTLIKAYVKA-KINDP-NLLRRMILGGARPDAETYSLLKLA 458
           YN L+     A  +N   +LL +M + G  PDA +++ L L+
Sbjct: 541 YNVLMHTLCSAGHVNKAIDLLNKMKIDGVTPDAYSFNALILS 582



 Score = 52.0 bits (123), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 53/237 (22%), Positives = 95/237 (40%), Gaps = 35/237 (14%)

Query: 100 NLVIACLDK-GVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKA 158
           N+VI C  K G +  + E +K+M+  G   + + FN LI   S  G       +L+ +  
Sbjct: 437 NMVIDCFVKAGAVDKAEEIVKEMQDKGFLPNLVTFNTLISGYSKLGNVHNAKVVLKMLME 496

Query: 159 DKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTV 218
               P + TF  L+    N H ++     + +M    V PN  +Y +L        ++T+
Sbjct: 497 HGFMPDIITFTSLIDGLCNTHQLDDAFVCFEEMAEWGVRPNAQTYNVL--------MHTL 548

Query: 219 AETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSKSYVLAIEA 278
                                      G++ K  DL          P+  + S+   I +
Sbjct: 549 CSA------------------------GHVNKAIDLLNKMKIDGVTPD--AYSFNALILS 582

Query: 279 FGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGC 335
           F R+ +V +AE+++ +M     +  +  YNS+I   C    ++KA  +L     +GC
Sbjct: 583 FCRMRKVDKAEDIFNDMVRFGVVPDSYTYNSLIKALCDERRVNKAKEILFARERSGC 639


>gi|296083846|emb|CBI24234.3| unnamed protein product [Vitis vinifera]
          Length = 589

 Score = 74.7 bits (182), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 82/369 (22%), Positives = 155/369 (42%), Gaps = 14/369 (3%)

Query: 92  YQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPN 151
           + + + YN L+ A   +G+++ + E M  M   G       +N +I      G+      
Sbjct: 129 FPDVVTYNTLINAYCRQGLLEEAFELMDSMSGKGLKPCVFTYNAIINGLCKTGKYLRAKG 188

Query: 152 ILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHA 211
           +L +M    ++P  +T++IL+     + N+    +++ +M    V P+ VS+  L    +
Sbjct: 189 VLDEMLKIGMSPDTATYNILLVECCRNDNMMDAERIFDEMPSQGVVPDLVSFSALIGLLS 248

Query: 212 VARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPN---VR 268
                  A  Y   ++ +  G     +   I++ G+   G   E +    + L     + 
Sbjct: 249 KNGCLDQALKYFRDMKNA--GLAPDNVIYTILIGGFCRNGVMSEALKVRDEMLEQGCVLD 306

Query: 269 SKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLK 328
             +Y   +    +   +S A+EL+ EM           + ++I+ Y K+G ++KA  L +
Sbjct: 307 VVTYNTILNGLCKEKMLSEADELFTEMTERGVFPDFYTFTTLINGYSKDGNMNKAVTLFE 366

Query: 329 EMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSII 388
            M     KP+ +TY  L  G  K + +E   K  EL   +I+    R   P   +   +I
Sbjct: 367 MMIQRNLKPDVVTYNTLIDGFCKGSEME---KVNELWNDMIS----RRIYPNHISYGILI 419

Query: 389 EIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKA--KINDPNLLRRMILGGAR 446
             +   G V  A  L++E+ +  +       NT++K Y +A   +     L  M+L G  
Sbjct: 420 NGYCNMGCVSEAFRLWDEMVEKGFEATIITCNTIVKGYCRAGNAVKADEFLSNMLLKGIV 479

Query: 447 PDAETYSLL 455
           PD  TY+ L
Sbjct: 480 PDGITYNTL 488



 Score = 63.2 bits (152), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 77/361 (21%), Positives = 147/361 (40%), Gaps = 50/361 (13%)

Query: 118 MKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEAN 177
           + +M  +G S     +N L++             I  +M +  V P + +F  L+ + + 
Sbjct: 190 LDEMLKIGMSPDTATYNILLVECCRNDNMMDAERIFDEMPSQGVVPDLVSFSALIGLLSK 249

Query: 178 DHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVA-ETYVEALEKSMTGNNWS 236
           +  ++  +K + DMK + + P+ V Y IL        + + A +   E LE+        
Sbjct: 250 NGCLDQALKYFRDMKNAGLAPDNVIYTILIGGFCRNGVMSEALKVRDEMLEQG------C 303

Query: 237 TLDVLIILYGYLAKGKDLERIWATVQELPNVRSK--------SYVLAIEAFGRIAQVSRA 288
            LDV  + Y  +  G   E++ +   EL    ++        ++   I  + +   +++A
Sbjct: 304 VLDV--VTYNTILNGLCKEKMLSEADELFTEMTERGVFPDFYTFTTLINGYSKDGNMNKA 361

Query: 289 EELWLEMQSVKQLKA-TEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYR---- 343
             L+ EM   + LK     YN++I  +CK   ++K + L  +M      PN I+Y     
Sbjct: 362 VTLF-EMMIQRNLKPDVVTYNTLIDGFCKGSEMEKVNELWNDMISRRIYPNHISYGILIN 420

Query: 344 -HLALGCFK------SNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGD 396
            +  +GC          +VE+GF+A      +IT               +I++ +   G+
Sbjct: 421 GYCNMGCVSEAFRLWDEMVEKGFEA-----TIITCN-------------TIVKGYCRAGN 462

Query: 397 VGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKINDP--NLLRRMILGGARPDAETYSL 454
              A+     +           YNTLI  ++K +  D    L+ +M   G  PD  TY++
Sbjct: 463 AVKADEFLSNMLLKGIVPDGITYNTLINGFIKEENMDRAFALVNKMENSGLLPDVITYNV 522

Query: 455 L 455
           +
Sbjct: 523 I 523



 Score = 63.2 bits (152), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 74/364 (20%), Positives = 152/364 (41%), Gaps = 18/364 (4%)

Query: 99  NNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKA 158
           N+L+   +  G + L+ E  +++   G  ++    N +I       + +   + L  M+ 
Sbjct: 66  NSLLGGLVKVGWVDLAWEIYQEVVRSGVQVNVYTLNIMINALCKNQKIENTKSFLSDMEE 125

Query: 159 DKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTV 218
             V P V T++ L+        +E   ++   M    ++P   +Y  +         Y  
Sbjct: 126 KGVFPDVVTYNTLINAYCRQGLLEEAFELMDSMSGKGLKPCVFTYNAIINGLCKTGKYLR 185

Query: 219 AETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQE---LPNVRSKSYVLA 275
           A+  ++ + K     + +T ++L++         D ERI+  +     +P++ S S ++ 
Sbjct: 186 AKGVLDEMLKIGMSPDTATYNILLVECCRNDNMMDAERIFDEMPSQGVVPDLVSFSALIG 245

Query: 276 IEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGC 335
           +    +   + +A + + +M++         Y  +I  +C+NG + +A  +  EM   GC
Sbjct: 246 L--LSKNGCLDQALKYFRDMKNAGLAPDNVIYTILIGGFCRNGVMSEALKVRDEMLEQGC 303

Query: 336 KPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKG 395
             + +TY  +  G  K  ++ E         +L T    R   P   T  ++I  +++ G
Sbjct: 304 VLDVVTYNTILNGLCKEKMLSEA-------DELFTEMTERGVFPDFYTFTTLINGYSKDG 356

Query: 396 DVGNAENLFEELKKANYTKYTFVYNTLIKAYVKA----KINDPNLLRRMILGGARPDAET 451
           ++  A  LFE + + N       YNTLI  + K     K+N+  L   MI     P+  +
Sbjct: 357 NMNKAVTLFEMMIQRNLKPDVVTYNTLIDGFCKGSEMEKVNE--LWNDMISRRIYPNHIS 414

Query: 452 YSLL 455
           Y +L
Sbjct: 415 YGIL 418



 Score = 58.2 bits (139), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 79/375 (21%), Positives = 154/375 (41%), Gaps = 18/375 (4%)

Query: 60  PKELDYSYLLEFTIKNHGISQGEKLFCCIP-KDYQNELLYNNLVIACLDK-GVIKLSLEY 117
           P    Y+ LL    +N  +   E++F  +P +    +L+  + +I  L K G +  +L+Y
Sbjct: 200 PDTATYNILLVECCRNDNMMDAERIFDEMPSQGVVPDLVSFSALIGLLSKNGCLDQALKY 259

Query: 118 MKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEAN 177
            + M+  G +   +++  LI      G       +  +M        V T++ ++     
Sbjct: 260 FRDMKNAGLAPDNVIYTILIGGFCRNGVMSEALKVRDEMLEQGCVLDVVTYNTILNGLCK 319

Query: 178 DHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWST 237
           +  +    +++++M    V P+  ++  L   ++       A T  E + +     +  T
Sbjct: 320 EKMLSEADELFTEMTERGVFPDFYTFTTLINGYSKDGNMNKAVTLFEMMIQRNLKPDVVT 379

Query: 238 LDVLIILYGYLAKGKDLERIWATVQELPNVR----SKSYVLAIEAFGRIAQVSRAEELWL 293
            + LI  +    KG ++E++     ++ + R      SY + I  +  +  VS A  LW 
Sbjct: 380 YNTLIDGF---CKGSEMEKVNELWNDMISRRIYPNHISYGILINGYCNMGCVSEAFRLWD 436

Query: 294 EMQSVKQLKATE-QYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKS 352
           EM   K  +AT    N+++  YC+ G   KA   L  M + G  P+ ITY  L  G  K 
Sbjct: 437 EMVE-KGFEATIITCNTIVKGYCRAGNAVKADEFLSNMLLKGIVPDGITYNTLINGFIKE 495

Query: 353 NLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANY 412
             ++  F        L+   +     P + T   I+  F+ +G +  AE +  ++ +   
Sbjct: 496 ENMDRAF-------ALVNKMENSGLLPDVITYNVILNGFSRQGRMQEAELIMLKMIERGV 548

Query: 413 TKYTFVYNTLIKAYV 427
                 Y +LI  +V
Sbjct: 549 NPDRSTYTSLINGHV 563



 Score = 48.5 bits (114), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 57/271 (21%), Positives = 109/271 (40%), Gaps = 13/271 (4%)

Query: 98  YNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMK 157
           YN ++     + ++  + E   +M   G    +  F  LI   S  G       +   M 
Sbjct: 310 YNTILNGLCKEKMLSEADELFTEMTERGVFPDFYTFTTLINGYSKDGNMNKAVTLFEMMI 369

Query: 158 ADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYT 217
              + P V T++ L+        +E + ++++DM    + PN +SY IL   +    +  
Sbjct: 370 QRNLKPDVVTYNTLIDGFCKGSEMEKVNELWNDMISRRIYPNHISYGILINGYC--NMGC 427

Query: 218 VAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSK------- 270
           V+E +    E    G   + +    I+ GY   G  ++      + L N+  K       
Sbjct: 428 VSEAFRLWDEMVEKGFEATIITCNTIVKGYCRAGNAVK----ADEFLSNMLLKGIVPDGI 483

Query: 271 SYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEM 330
           +Y   I  F +   + RA  L  +M++   L     YN +++ + + G + +A  ++ +M
Sbjct: 484 TYNTLINGFIKEENMDRAFALVNKMENSGLLPDVITYNVILNGFSRQGRMQEAELIMLKM 543

Query: 331 SMNGCKPNAITYRHLALGCFKSNLVEEGFKA 361
              G  P+  TY  L  G    N ++E F+ 
Sbjct: 544 IERGVNPDRSTYTSLINGHVTQNNLKEAFRV 574


>gi|414587035|tpg|DAA37606.1| TPA: hypothetical protein ZEAMMB73_100135 [Zea mays]
          Length = 547

 Score = 74.7 bits (182), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 90/375 (24%), Positives = 155/375 (41%), Gaps = 54/375 (14%)

Query: 30  FHSINRLRKLQLNKRALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGI--------SQG 81
            H I  L +   ++ AL++ + ++ +  Y P+   +S++   +  N G+        ++G
Sbjct: 112 IHVIAFLCRSGRHRDALKLFDQMMDQSGYLPEAGFFSFVAG-SCTNAGLLDAASTLLTKG 170

Query: 82  EKLFCCIPKDYQNELLYNNLV--------IACLD-------------------KGVIKL- 113
            +L CCI + Y    L N+L+        +A  +                   KGV ++ 
Sbjct: 171 SRLGCCI-EPYAYNYLLNSLIAHGRAQDAVALFESWIQDGLYSPDVWSFNVVIKGVCRMG 229

Query: 114 ----SLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTI---PNILRQMKADKVA-PHV 165
               +LE +++M   G S   +  N   IL     R K +     +LR+++ D V  P+ 
Sbjct: 230 NFQKALELVERMTEFGCSPDTITHN---ILVDGLCRAKQVNKGHEVLRRLQRDGVCMPNA 286

Query: 166 STFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEA 225
            T+  ++        +E  M VY+DM  S   PN V+Y +L   +  A     A      
Sbjct: 287 VTYTSVISGYCKAGKMEDAMSVYNDMLESGTRPNTVTYNVLINGYGKALDMESAVRMYRQ 346

Query: 226 LEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQV 285
           L       +  T   LI  Y    +  D +RIW  +  L +++   Y  +I       Q 
Sbjct: 347 LILRHCPPDVVTFSSLIDGYCRCGQLDDAKRIWKEMG-LHHIQPNVYTFSIIIHSLCKQN 405

Query: 286 SRAEELWLEMQSVKQLKATEQ---YNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITY 342
             AE L +  +   +     Q   YN VI + CK G +D+A+ ++ +M   GC P+  TY
Sbjct: 406 RSAEALDILRELNMRTDIAPQTFIYNPVIDILCKGGKVDEANLIVTDMKEKGCHPDKYTY 465

Query: 343 RHLALG-CFKSNLVE 356
             L +G C K  + E
Sbjct: 466 TILIIGHCMKGRIPE 480



 Score = 67.4 bits (163), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 83/400 (20%), Positives = 164/400 (41%), Gaps = 20/400 (5%)

Query: 60  PKELDYSYLLEFTIKNHGISQGEKLFCCI--PKDYQNELLYNNLVI-ACLDKGVIKLSLE 116
           P E  Y +++ F  ++       KLF  +     Y  E  + + V  +C + G++  +  
Sbjct: 106 PSEQSYIHVIAFLCRSGRHRDALKLFDQMMDQSGYLPEAGFFSFVAGSCTNAGLLDAAST 165

Query: 117 YMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKV-APHVSTFHILMKIE 175
            + K   LG  I    +N L+    + GR +    +      D + +P V +F++++K  
Sbjct: 166 LLTKGSRLGCCIEPYAYNYLLNSLIAHGRAQDAVALFESWIQDGLYSPDVWSFNVVIKGV 225

Query: 176 ANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEK-SMTGNN 234
               N +  +++   M      P+ +++ IL      A+        +  L++  +   N
Sbjct: 226 CRMGNFQKALELVERMTEFGCSPDTITHNILVDGLCRAKQVNKGHEVLRRLQRDGVCMPN 285

Query: 235 WSTLDVLIILYGYLAKGKDLERIWATVQEL---PNVRSKSYVLAIEAFGRIAQVSRAEEL 291
             T   +I  Y    K +D   ++  + E    PN  + +Y + I  +G+   +  A  +
Sbjct: 286 AVTYTSVISGYCKAGKMEDAMSVYNDMLESGTRPN--TVTYNVLINGYGKALDMESAVRM 343

Query: 292 WLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFK 351
           + ++           ++S+I  YC+ G +D A  + KEM ++  +PN  T+  +     K
Sbjct: 344 YRQLILRHCPPDVVTFSSLIDGYCRCGQLDDAKRIWKEMGLHHIQPNVYTFSIIIHSLCK 403

Query: 352 SNLVEEGFKAL-ELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKA 410
            N   E    L EL M+     +     P       +I+I  + G V  A  +  ++K+ 
Sbjct: 404 QNRSAEALDILRELNMRTDIAPQTFIYNP-------VIDILCKGGKVDEANLIVTDMKEK 456

Query: 411 NYTKYTFVYNTLIKAY-VKAKINDP-NLLRRMILGGARPD 448
                 + Y  LI  + +K +I +   L  +M+  G RPD
Sbjct: 457 GCHPDKYTYTILIIGHCMKGRIPEAITLFHKMVEAGCRPD 496



 Score = 56.6 bits (135), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 41/152 (26%), Positives = 71/152 (46%), Gaps = 8/152 (5%)

Query: 306 QYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELG 365
            +N VI   C+ G   KA  L++ M+  GC P+ IT+  L  G  ++  V +G + L   
Sbjct: 217 SFNVVIKGVCRMGNFQKALELVERMTEFGCSPDTITHNILVDGLCRAKQVNKGHEVLR-- 274

Query: 366 MKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKA 425
                 ++     P   T  S+I  + + G + +A +++ ++ ++     T  YN LI  
Sbjct: 275 ----RLQRDGVCMPNAVTYTSVISGYCKAGKMEDAMSVYNDMLESGTRPNTVTYNVLING 330

Query: 426 YVKAKINDP--NLLRRMILGGARPDAETYSLL 455
           Y KA   +    + R++IL    PD  T+S L
Sbjct: 331 YGKALDMESAVRMYRQLILRHCPPDVVTFSSL 362


>gi|357122161|ref|XP_003562784.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g02860-like [Brachypodium distachyon]
          Length = 791

 Score = 74.7 bits (182), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 79/334 (23%), Positives = 151/334 (45%), Gaps = 27/334 (8%)

Query: 132 VFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEAN-DHNIEGLMKVYSD 190
            +  LI   S   R +    + R+M A+ V P + T+++++ + +      + ++ +   
Sbjct: 178 AYTALISALSRASRFRDAVAVFRRMVANGVCPALVTYNVVLHVYSKIAVPWKEVLALVDS 237

Query: 191 MKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAK 250
           M++  +  +  +Y  L +      LY  A    + +  +    +  TL+ L+ +YG   K
Sbjct: 238 MRKDGIPLDRYTYNTLISCCRRRALYKEAAKVFDEMRAAGFEPDKVTLNSLLDVYG---K 294

Query: 251 GKDLERIWATVQEL------PNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKAT 304
            +  +     ++E+      P+V   +Y   I ++ +   +  A +L  EM+ VK ++  
Sbjct: 295 ARRYDEAIGVLKEMEQGGCPPSV--VTYNSLISSYVKDGLLEEATQLKEEME-VKGIEPD 351

Query: 305 E-QYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALE 363
              Y +++S   + G ID A G   EM  NGCKPN  TY  L     K + V   F  + 
Sbjct: 352 VITYTTLVSGLDRAGKIDAAIGTYNEMLRNGCKPNLCTYNAL----IKLHGVRGKFPEM- 406

Query: 364 LGMKLITTKKVRSS--TPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNT 421
               +I   ++RS+   P + T  +++ +F + G       +F+E+KK+ Y      Y +
Sbjct: 407 ----MIVFDEIRSAGFVPDVVTWNTLLAVFGQNGLDTEVSGVFKEMKKSGYVPERDTYVS 462

Query: 422 LIKAYVKAKINDP--NLLRRMILGGARPDAETYS 453
           LI +Y +  + D    + +RMI  G  PD  TY+
Sbjct: 463 LISSYSRCGLFDQAMEIYKRMIEAGIHPDISTYN 496



 Score = 72.4 bits (176), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 73/334 (21%), Positives = 138/334 (41%), Gaps = 43/334 (12%)

Query: 98  YNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMK 157
           YN L+  C  + + K + +   +MR  G     +  N L+ +     R      +L++M+
Sbjct: 250 YNTLISCCRRRALYKEAAKVFDEMRAAGFEPDKVTLNSLLDVYGKARRYDEAIGVLKEME 309

Query: 158 ADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATA-HAVARLY 216
                P V T++ L+     D  +E   ++  +M+   +EP+ ++Y  L +      ++ 
Sbjct: 310 QGGCPPSVVTYNSLISSYVKDGLLEEATQLKEEMEVKGIEPDVITYTTLVSGLDRAGKID 369

Query: 217 TVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSKSYVLAI 276
               TY E L ++    N  T + LI L+G                    VR K   + I
Sbjct: 370 AAIGTYNEML-RNGCKPNLCTYNALIKLHG--------------------VRGKFPEMMI 408

Query: 277 EAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCK 336
                         ++ E++S   +     +N++++V+ +NG   + SG+ KEM  +G  
Sbjct: 409 --------------VFDEIRSAGFVPDVVTWNTLLAVFGQNGLDTEVSGVFKEMKKSGYV 454

Query: 337 PNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGD 396
           P   TY  L     +  L ++   A+E+  ++I         P + T  +++   A  G 
Sbjct: 455 PERDTYVSLISSYSRCGLFDQ---AMEIYKRMIEA----GIHPDISTYNAVLSALARGGR 507

Query: 397 VGNAENLFEELKKANYTKYTFVYNTLIKAYVKAK 430
              AE LF E++  +       Y++L+ AY  AK
Sbjct: 508 WEQAEKLFAEMENLDSRPDELSYSSLLHAYANAK 541



 Score = 65.5 bits (158), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 83/405 (20%), Positives = 165/405 (40%), Gaps = 59/405 (14%)

Query: 96  LLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQ 155
           + Y  LV      G I  ++    +M   G   +   +N LI L+   G+   +  +  +
Sbjct: 353 ITYTTLVSGLDRAGKIDAAIGTYNEMLRNGCKPNLCTYNALIKLHGVRGKFPEMMIVFDE 412

Query: 156 MKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARL 215
           +++    P V T++ L+ +   +     +  V+ +MK+S   P   +Y  L ++++   L
Sbjct: 413 IRSAGFVPDVVTWNTLLAVFGQNGLDTEVSGVFKEMKKSGYVPERDTYVSLISSYSRCGL 472

Query: 216 YTVA----------------ETYVEALEKSMTGNNWSTLDVLI----------------- 242
           +  A                 TY   L     G  W   + L                  
Sbjct: 473 FDQAMEIYKRMIEAGIHPDISTYNAVLSALARGGRWEQAEKLFAEMENLDSRPDELSYSS 532

Query: 243 ILYGYLAKGKDLERIWATVQELPNVRSKSYVLAIEAF----GRIAQVSRAEELWLEMQSV 298
           +L+ Y A  K L+++ +  +++   R +S+   ++       ++  +S  E+ +LE++  
Sbjct: 533 LLHAY-ANAKKLDKMKSLSEDIYAERIESHNGLVKTLVLVNSKVNNLSDTEKAFLELRRR 591

Query: 299 KQLKATEQYNSVISVYCKNGFIDKAS---GLLKEMSMN--GCKPNAITYRHLALG-CFKS 352
           +        N++IS+Y KNG + K      L+KE S+N      N++ + +  LG C K 
Sbjct: 592 RCSLDINVLNAMISIYGKNGMVKKVEEILSLMKESSINLSTATYNSLMHMYSRLGDCEKC 651

Query: 353 NLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANY 412
                          ++T  K   + P   +  ++I  +  KG +  A  LF E+K +  
Sbjct: 652 E-------------NILTEIKSSRARPDRYSYNTMIYAYGRKGQMKEASRLFSEMKCSGL 698

Query: 413 TKYTFVYNTLIKAYVKAKINDP--NLLRRMILGGARPDAETYSLL 455
                 YN  +K+YV   + +   +L+R M+  G +P+  TY+ +
Sbjct: 699 VPDIVTYNIFVKSYVANSMFEEAIDLVRYMVTHGCKPNERTYNTI 743



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 64/293 (21%), Positives = 128/293 (43%), Gaps = 45/293 (15%)

Query: 152 ILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHA 211
           I ++M    + P +ST++ ++   A     E   K++++M+  +  P+E+SY  L  A+A
Sbjct: 479 IYKRMIEAGIHPDISTYNAVLSALARGGRWEQAEKLFAEMENLDSRPDELSYSSLLHAYA 538

Query: 212 VAR----LYTVAET-YVEALEKSMTG------------NNWS------------------ 236
            A+    + +++E  Y E +E S  G            NN S                  
Sbjct: 539 NAKKLDKMKSLSEDIYAERIE-SHNGLVKTLVLVNSKVNNLSDTEKAFLELRRRRCSLDI 597

Query: 237 -TLDVLIILYGYLAKGKDLERIWATVQELP-NVRSKSYVLAIEAFGRIAQVSRAEELWLE 294
             L+ +I +YG     K +E I + ++E   N+ + +Y   +  + R+    + E +  E
Sbjct: 598 NVLNAMISIYGKNGMVKKVEEILSLMKESSINLSTATYNSLMHMYSRLGDCEKCENILTE 657

Query: 295 MQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNL 354
           ++S +       YN++I  Y + G + +AS L  EM  +G  P+ +TY         +++
Sbjct: 658 IKSSRARPDRYSYNTMIYAYGRKGQMKEASRLFSEMKCSGLVPDIVTYNIFVKSYVANSM 717

Query: 355 VEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEEL 407
            EE   A++L   ++T        P   T  +I++ +   G + + ++    L
Sbjct: 718 FEE---AIDLVRYMVT----HGCKPNERTYNTILQEYCSHGRIADGKSFISNL 763



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 98/480 (20%), Positives = 197/480 (41%), Gaps = 46/480 (9%)

Query: 15  QSWMREGFPVHRGEIFHSINRLRKLQLNKRALEVMEWVIRERPYRPKELDYSYLLEFTIK 74
            S  ++G P+ R      I+  R+  L K A +V +  +R   + P ++  + LL+   K
Sbjct: 236 DSMRKDGIPLDRYTYNTLISCCRRRALYKEAAKVFDE-MRAAGFEPDKVTLNSLLDVYGK 294

Query: 75  NH------GISQGEKLFCCIPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSI 128
                   G+ +  +   C P    + + YN+L+ + +  G+++ + +  ++M V G   
Sbjct: 295 ARRYDEAIGVLKEMEQGGCPP----SVVTYNSLISSYVKDGLLEEATQLKEEMEVKGIEP 350

Query: 129 SYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVY 188
             + +  L+      G+         +M  +   P++ T++ L+K+         +M V+
Sbjct: 351 DVITYTTLVSGLDRAGKIDAAIGTYNEMLRNGCKPNLCTYNALIKLHGVRGKFPEMMIVF 410

Query: 189 SDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYL 248
            +++ +   P+ V++  L        L T      + ++KS       T   LI  Y   
Sbjct: 411 DEIRSAGFVPDVVTWNTLLAVFGQNGLDTEVSGVFKEMKKSGYVPERDTYVSLISSYSRC 470

Query: 249 AKGKDLERIWATVQEL---PNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATE 305
                   I+  + E    P++ + + VL+  A  R  +  +AE+L+ EM+++       
Sbjct: 471 GLFDQAMEIYKRMIEAGIHPDISTYNAVLS--ALARGGRWEQAEKLFAEMENLDSRPDEL 528

Query: 306 QYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKA-LEL 364
            Y+S++  Y     +DK   L +++     + +    + L L   K N + +  KA LEL
Sbjct: 529 SYSSLLHAYANAKKLDKMKSLSEDIYAERIESHNGLVKTLVLVNSKVNNLSDTEKAFLEL 588

Query: 365 ----------------------GM-----KLITTKKVRSSTPWLETTLSIIEIFAEKGDV 397
                                 GM     ++++  K  S      T  S++ +++  GD 
Sbjct: 589 RRRRCSLDINVLNAMISIYGKNGMVKKVEEILSLMKESSINLSTATYNSLMHMYSRLGDC 648

Query: 398 GNAENLFEELKKANYTKYTFVYNTLIKAY-VKAKINDPN-LLRRMILGGARPDAETYSLL 455
              EN+  E+K +      + YNT+I AY  K ++ + + L   M   G  PD  TY++ 
Sbjct: 649 EKCENILTEIKSSRARPDRYSYNTMIYAYGRKGQMKEASRLFSEMKCSGLVPDIVTYNIF 708



 Score = 45.1 bits (105), Expect = 0.072,   Method: Compositional matrix adjust.
 Identities = 44/194 (22%), Positives = 77/194 (39%), Gaps = 10/194 (5%)

Query: 265 PNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFI-DKA 323
           P+  + +Y   I A  R ++   A  ++  M +     A   YN V+ VY K      + 
Sbjct: 172 PDPDASAYTALISALSRASRFRDAVAVFRRMVANGVCPALVTYNVVLHVYSKIAVPWKEV 231

Query: 324 SGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLET 383
             L+  M  +G   +  TY  L   C +  L +E  K  +         +     P   T
Sbjct: 232 LALVDSMRKDGIPLDRYTYNTLISCCRRRALYKEAAKVFD-------EMRAAGFEPDKVT 284

Query: 384 TLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKI--NDPNLLRRMI 441
             S+++++ +      A  + +E+++         YN+LI +YVK  +      L   M 
Sbjct: 285 LNSLLDVYGKARRYDEAIGVLKEMEQGGCPPSVVTYNSLISSYVKDGLLEEATQLKEEME 344

Query: 442 LGGARPDAETYSLL 455
           + G  PD  TY+ L
Sbjct: 345 VKGIEPDVITYTTL 358


>gi|297733951|emb|CBI15198.3| unnamed protein product [Vitis vinifera]
          Length = 948

 Score = 74.7 bits (182), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 76/350 (21%), Positives = 147/350 (42%), Gaps = 25/350 (7%)

Query: 94  NELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILN------SSPGRRK 147
           N + Y  L+  C  +G      +++K  R+    I   +F  ++I            R  
Sbjct: 192 NVVTYGTLIDGCCRQG------DFLKAFRLFDEMIEKKIFPTVVIYTILIRGLCGESRIS 245

Query: 148 TIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILA 207
              ++ R M+   + P++ T++ +M       +++  +++Y +M    + PN V++ IL 
Sbjct: 246 EAESMFRTMRNSGMLPNLYTYNTMMDGYCKIAHVKKALELYQEMLGDGLLPNVVTFGILI 305

Query: 208 TAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILY---GYLAKGKDLERIWATVQEL 264
                      A  ++  +       N    + LI  Y   G L++   L       + L
Sbjct: 306 DGLCKTDEMVSARKFLIDMASFGVVPNIFVYNCLIDGYCKAGNLSEALSLHSEIEKHEIL 365

Query: 265 PNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKAS 324
           P+V +  Y + I+    + ++  A+ L  EM+    L     YN++I  YCK G ++KA 
Sbjct: 366 PDVFT--YSILIKGLCGVDRMEEADGLLQEMKKKGFLPNAVTYNTLIDGYCKEGNMEKAI 423

Query: 325 GLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETT 384
            +  +M+  G +PN IT+  L  G  K+         +E  M L T   ++   P +   
Sbjct: 424 EVCSQMTEKGIEPNIITFSTLIDGYCKAG-------KMEAAMGLYTEMVIKGLLPDVVAY 476

Query: 385 LSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVK-AKIND 433
            ++I+   + G+   A  L +E+++A      F  + LI    K  +I+D
Sbjct: 477 TALIDGHFKDGNTKEAFRLHKEMQEAGLHPNVFTLSCLIDGLCKDGRISD 526



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 80/338 (23%), Positives = 133/338 (39%), Gaps = 35/338 (10%)

Query: 132 VFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDM 191
           VF  LII  S  G  +    +  +M    V P +   ++++         + + KVY DM
Sbjct: 128 VFGVLIIAFSEMGLVEEALWVYYKMD---VLPAMQACNMVLDGLVKKGRFDTMWKVYGDM 184

Query: 192 KRSEVEPNEVSYCILATAHAVARLYTVA-ETYVEALEKSMTGNNWSTLDVLIILYGYLAK 250
                 PN V+Y  L         +  A   + E +EK +           +++Y  L +
Sbjct: 185 VARGASPNVVTYGTLIDGCCRQGDFLKAFRLFDEMIEKKIFPT--------VVIYTILIR 236

Query: 251 G-------KDLERIWATVQE---LPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQ 300
           G        + E ++ T++    LPN+   +Y   ++ + +IA V +A EL+ EM     
Sbjct: 237 GLCGESRISEAESMFRTMRNSGMLPNLY--TYNTMMDGYCKIAHVKKALELYQEMLGDGL 294

Query: 301 LKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALG-CFKSNLVEEGF 359
           L     +  +I   CK   +  A   L +M+  G  PN   Y  L  G C   NL E   
Sbjct: 295 LPNVVTFGILIDGLCKTDEMVSARKFLIDMASFGVVPNIFVYNCLIDGYCKAGNLSE--- 351

Query: 360 KALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVY 419
                 + L +  +     P + T   +I+       +  A+ L +E+KK  +      Y
Sbjct: 352 -----ALSLHSEIEKHEILPDVFTYSILIKGLCGVDRMEEADGLLQEMKKKGFLPNAVTY 406

Query: 420 NTLIKAYVKAKINDP--NLLRRMILGGARPDAETYSLL 455
           NTLI  Y K    +    +  +M   G  P+  T+S L
Sbjct: 407 NTLIDGYCKEGNMEKAIEVCSQMTEKGIEPNIITFSTL 444



 Score = 51.6 bits (122), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 75/352 (21%), Positives = 147/352 (41%), Gaps = 21/352 (5%)

Query: 44  RALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQGEKLFCCIPKD--YQNELLYNNL 101
           +A  + + +I ++ + P  + Y+ L+        IS+ E +F  +       N   YN +
Sbjct: 211 KAFRLFDEMIEKKIF-PTVVIYTILIRGLCGESRISEAESMFRTMRNSGMLPNLYTYNTM 269

Query: 102 VIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKV 161
           +        +K +LE  ++M   G   + + F  LI          +    L  M +  V
Sbjct: 270 MDGYCKIAHVKKALELYQEMLGDGLLPNVVTFGILIDGLCKTDEMVSARKFLIDMASFGV 329

Query: 162 APHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAET 221
            P++  ++ L+       N+   + ++S++++ E+ P+  +Y IL            A+ 
Sbjct: 330 VPNIFVYNCLIDGYCKAGNLSEALSLHSEIEKHEILPDVFTYSILIKGLCGVDRMEEADG 389

Query: 222 YVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQEL------PNVRSKSYVLA 275
            ++ ++K     N  T + LI   GY  +G ++E+      ++      PN+ + S +  
Sbjct: 390 LLQEMKKKGFLPNAVTYNTLI--DGYCKEG-NMEKAIEVCSQMTEKGIEPNIITFSTL-- 444

Query: 276 IEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGC 335
           I+ + +  ++  A  L+ EM     L     Y ++I  + K+G   +A  L KEM   G 
Sbjct: 445 IDGYCKAGKMEAAMGLYTEMVIKGLLPDVVAYTALIDGHFKDGNTKEAFRLHKEMQEAGL 504

Query: 336 KPNAITYRHLALGCFKSNLVEEG--FKALELGMKLITTKKVRSSTPWLETTL 385
            PN  T     L C    L ++G    A++L +    T    S T  L+ +L
Sbjct: 505 HPNVFT-----LSCLIDGLCKDGRISDAIKLFLAKTGTDTTGSKTNELDRSL 551



 Score = 48.5 bits (114), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 48/193 (24%), Positives = 81/193 (41%), Gaps = 16/193 (8%)

Query: 265 PNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKAS 324
           PNV    + + I AF  +  V   E LW+  + +  L A +  N V+    K G  D   
Sbjct: 126 PNV----FGVLIIAFSEMGLVE--EALWVYYK-MDVLPAMQACNMVLDGLVKKGRFDTMW 178

Query: 325 GLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETT 384
            +  +M   G  PN +TY  L  GC +     +  KA  L  ++I  K      P +   
Sbjct: 179 KVYGDMVARGASPNVVTYGTLIDGCCRQG---DFLKAFRLFDEMIEKKIF----PTVVIY 231

Query: 385 LSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVK-AKINDP-NLLRRMIL 442
             +I     +  +  AE++F  ++ +      + YNT++  Y K A +     L + M+ 
Sbjct: 232 TILIRGLCGESRISEAESMFRTMRNSGMLPNLYTYNTMMDGYCKIAHVKKALELYQEMLG 291

Query: 443 GGARPDAETYSLL 455
            G  P+  T+ +L
Sbjct: 292 DGLLPNVVTFGIL 304


>gi|125537003|gb|EAY83491.1| hypothetical protein OsI_38705 [Oryza sativa Indica Group]
          Length = 696

 Score = 74.7 bits (182), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 106/490 (21%), Positives = 192/490 (39%), Gaps = 68/490 (13%)

Query: 8   EPVGSAFQSWMREGFPVHRGEIFHSINRLRKLQLNKRALEVMEWVIRERPYRPKELDYSY 67
           E V +  +SW R G   +  E+F  + RL                      RP    Y+ 
Sbjct: 154 ELVCALVESWGRLGLARYAHEVFVQMPRL--------------------GLRPSTAVYNA 193

Query: 68  LLEFTIKNHGISQGEKLFCCIPKD--YQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLG 125
           L+  +++   +      F  +P D    +   YN+LV     +G++  ++  +++M   G
Sbjct: 194 LIAASVRAGAVDTAYLRFQQMPADGCRPDRFTYNSLVHGVCRRGIVDEAVRLVRQMEGEG 253

Query: 126 HSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHIL-------------- 171
              +   +  L+    + GR +    +L +MK   VAP  +T+  L              
Sbjct: 254 IRPNVFTYTMLVDGFCNAGRVEEAFRMLDKMKEKGVAPSEATYRTLVHGVFRCLERDKAY 313

Query: 172 ------MKIEANDHNIEGLMKVYS----DMKRSEVE----PNEVSYCILATAHAVARLYT 217
                 +  E + H       +Y     DM +  VE     +   Y + +TA  +    +
Sbjct: 314 RMLSDWLGHETSLHPSACHTMLYCLSKKDMAKEAVEFAKRMSARGYLLDSTAFGIVMSCS 373

Query: 218 V----AETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERI--WATVQELPNVRSK- 270
           +         E L+  +        DV I++   L   K+  +   +     L  + S  
Sbjct: 374 LKCLEVSDLCELLDSFIKNGGNPGFDVYIMVIKSLLNCKNFSKANHYLGHMVLKGLLSSV 433

Query: 271 -SYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKE 329
            SY + I+ F +   V +AEE+  EMQ    L     +N++IS Y K G +  A  +LK 
Sbjct: 434 MSYNMVIDCFVKAGAVDKAEEIVKEMQDKGFLPNLVTFNTLISGYSKLGNVHNAKVVLKM 493

Query: 330 MSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIE 389
           +  +G  P+ IT+  L  G   ++ +++ F   E     +    VR   P  +T   ++ 
Sbjct: 494 LMEHGFMPDIITFTSLIDGLCNTHQLDDAFVCFE----EMAEWGVR---PNAQTYNVLMH 546

Query: 390 IFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKINDP--NLLRRMILGGARP 447
                G V  A +L  ++K    T   + +N LI ++ + +  D   ++   M+  G  P
Sbjct: 547 TLCSAGHVNKAIDLLNKMKIDGVTPDAYSFNALILSFCRMRKVDKAEDIFNDMVRFGVVP 606

Query: 448 DAETY-SLLK 456
           D+ TY SL+K
Sbjct: 607 DSYTYNSLIK 616



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 90/402 (22%), Positives = 160/402 (39%), Gaps = 49/402 (12%)

Query: 97  LYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQM 156
           +YN L+ A +  G +  +    ++M   G       +N L+      G       ++RQM
Sbjct: 190 VYNALIAASVRAGAVDTAYLRFQQMPADGCRPDRFTYNSLVHGVCRRGIVDEAVRLVRQM 249

Query: 157 KADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVAR-- 214
           + + + P+V T+ +L+    N   +E   ++   MK   V P+E +Y  L   H V R  
Sbjct: 250 EGEGIRPNVFTYTMLVDGFCNAGRVEEAFRMLDKMKEKGVAPSEATYRTL--VHGVFRCL 307

Query: 215 ---------------------------LYTVAETYV--EALE--KSMTGNNW----STLD 239
                                      LY +++  +  EA+E  K M+   +    +   
Sbjct: 308 ERDKAYRMLSDWLGHETSLHPSACHTMLYCLSKKDMAKEAVEFAKRMSARGYLLDSTAFG 367

Query: 240 VLIILYGYLAKGKDL-ERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSV 298
           +++       +  DL E + + ++   N     Y++ I++       S+A      M   
Sbjct: 368 IVMSCSLKCLEVSDLCELLDSFIKNGGNPGFDVYIMVIKSLLNCKNFSKANHYLGHMVLK 427

Query: 299 KQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEG 358
             L +   YN VI  + K G +DKA  ++KEM   G  PN +T+  L  G  K   V   
Sbjct: 428 GLLSSVMSYNMVIDCFVKAGAVDKAEEIVKEMQDKGFLPNLVTFNTLISGYSKLGNVHNA 487

Query: 359 FKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFV 418
              L++ M+           P + T  S+I+       + +A   FEE+ +         
Sbjct: 488 KVVLKMLME-------HGFMPDIITFTSLIDGLCNTHQLDDAFVCFEEMAEWGVRPNAQT 540

Query: 419 YNTLIKAYVKA-KINDP-NLLRRMILGGARPDAETYSLLKLA 458
           YN L+     A  +N   +LL +M + G  PDA +++ L L+
Sbjct: 541 YNVLMHTLCSAGHVNKAIDLLNKMKIDGVTPDAYSFNALILS 582



 Score = 51.6 bits (122), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 53/237 (22%), Positives = 95/237 (40%), Gaps = 35/237 (14%)

Query: 100 NLVIACLDK-GVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKA 158
           N+VI C  K G +  + E +K+M+  G   + + FN LI   S  G       +L+ +  
Sbjct: 437 NMVIDCFVKAGAVDKAEEIVKEMQDKGFLPNLVTFNTLISGYSKLGNVHNAKVVLKMLME 496

Query: 159 DKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTV 218
               P + TF  L+    N H ++     + +M    V PN  +Y +L        ++T+
Sbjct: 497 HGFMPDIITFTSLIDGLCNTHQLDDAFVCFEEMAEWGVRPNAQTYNVL--------MHTL 548

Query: 219 AETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSKSYVLAIEA 278
                                      G++ K  DL          P+  + S+   I +
Sbjct: 549 CSA------------------------GHVNKAIDLLNKMKIDGVTPD--AYSFNALILS 582

Query: 279 FGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGC 335
           F R+ +V +AE+++ +M     +  +  YNS+I   C    ++KA  +L     +GC
Sbjct: 583 FCRMRKVDKAEDIFNDMVRFGVVPDSYTYNSLIKALCDERRVNKAKEILFARERSGC 639


>gi|22135795|gb|AAM91084.1| AT4g28010/T13J8_120 [Arabidopsis thaliana]
          Length = 704

 Score = 74.7 bits (182), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 91/397 (22%), Positives = 169/397 (42%), Gaps = 53/397 (13%)

Query: 96  LLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQ 155
           ++Y +L+    D G +        ++   G S   + +N LI      G+ K    I   
Sbjct: 248 VVYTSLIRGFCDCGELDRGKALFDEVLERGDSPCAITYNTLIRGFCKLGQLKEASEIFEF 307

Query: 156 MKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARL 215
           M    V P+V T+  L+         +  ++  + M   + EPN V+Y I+        L
Sbjct: 308 MIERGVRPNVYTYTGLIDGLCGVGKTKEALQPLNLMIEKDEEPNAVTYNIIINKLCKDGL 367

Query: 216 YTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLER----IWATVQEL----PNV 267
              A   VE ++K  T  +  T ++L  L G  AKG DL+     ++  +++     P+V
Sbjct: 368 VADAVEIVELMKKRRTRPDNITYNIL--LGGLCAKG-DLDEASKLLYLMLKDSSYTDPDV 424

Query: 268 RSKS------------------YVLAIEAFG---------------RIAQVSRAEELWLE 294
            S +                  Y L +E  G               +   V++A ELW +
Sbjct: 425 ISYNALIHGLCKENRLHQALDIYDLLVEKLGAGDRVTTNILLNSTLKAGDVNKAMELWKQ 484

Query: 295 MQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNL 354
           +   K ++ ++ Y ++I  +CK G ++ A GLL +M ++  +P+   Y      C  S+L
Sbjct: 485 ISDSKIVRNSDTYTAMIDGFCKTGMLNVAKGLLCKMRVSELQPSVFDYN-----CLLSSL 539

Query: 355 VEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTK 414
            +EG  +L+   +L    +  ++ P + +   +I+   + GD+ +AE+L   + +A  + 
Sbjct: 540 CKEG--SLDQAWRLFEEMQRDNNFPDVVSFNIMIDGSLKAGDIKSAESLLVGMSRAGLSP 597

Query: 415 YTFVYNTLIKAYVKAKINDP--NLLRRMILGGARPDA 449
             F Y+ LI  ++K    D   +   +M+  G  PDA
Sbjct: 598 DLFTYSKLINRFLKLGYLDEAISFFDKMVDSGFEPDA 634



 Score = 53.5 bits (127), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 45/182 (24%), Positives = 82/182 (45%), Gaps = 9/182 (4%)

Query: 276 IEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGC 335
           ++   R  +  +A  L  EM+    +     YN+VI  +C+   ++KA  L  EM  +GC
Sbjct: 149 LKGLCRNLECGKAVSLLREMRRNSLMPDVFSYNTVIRGFCEGKELEKALELANEMKGSGC 208

Query: 336 KPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKG 395
             + +T+  L     K+  ++E        M  +   K       L    S+I  F + G
Sbjct: 209 SWSLVTWGILIDAFCKAGKMDE-------AMGFLKEMKFMGLEADLVVYTSLIRGFCDCG 261

Query: 396 DVGNAENLFEELKKANYTKYTFVYNTLIKAYVK-AKINDPN-LLRRMILGGARPDAETYS 453
           ++   + LF+E+ +   +     YNTLI+ + K  ++ + + +   MI  G RP+  TY+
Sbjct: 262 ELDRGKALFDEVLERGDSPCAITYNTLIRGFCKLGQLKEASEIFEFMIERGVRPNVYTYT 321

Query: 454 LL 455
            L
Sbjct: 322 GL 323



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 50/194 (25%), Positives = 80/194 (41%), Gaps = 11/194 (5%)

Query: 264 LPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKA 323
           +P+V S  Y   I  F    ++ +A EL  EM+      +   +  +I  +CK G +D+A
Sbjct: 174 MPDVFS--YNTVIRGFCEGKELEKALELANEMKGSGCSWSLVTWGILIDAFCKAGKMDEA 231

Query: 324 SGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLET 383
            G LKEM   G + + + Y  L  G       + G   L+ G  L      R  +P   T
Sbjct: 232 MGFLKEMKFMGLEADLVVYTSLIRG-----FCDCG--ELDRGKALFDEVLERGDSPCAIT 284

Query: 384 TLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKINDPNL--LRRMI 441
             ++I  F + G +  A  +FE + +       + Y  LI            L  L  MI
Sbjct: 285 YNTLIRGFCKLGQLKEASEIFEFMIERGVRPNVYTYTGLIDGLCGVGKTKEALQPLNLMI 344

Query: 442 LGGARPDAETYSLL 455
                P+A TY+++
Sbjct: 345 EKDEEPNAVTYNII 358



 Score = 48.9 bits (115), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 62/309 (20%), Positives = 126/309 (40%), Gaps = 45/309 (14%)

Query: 151 NILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAH 210
           ++LR+M+ + + P V +++ +++       +E  +++ ++MK S    + V++ IL  A 
Sbjct: 163 SLLREMRRNSLMPDVFSYNTVIRGFCEGKELEKALELANEMKGSGCSWSLVTWGILIDAF 222

Query: 211 AVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSK 270
             A     A  +++ ++       +  L+  +++Y  L +G                   
Sbjct: 223 CKAGKMDEAMGFLKEMK-------FMGLEADLVVYTSLIRG------------------- 256

Query: 271 SYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEM 330
                   F    ++ R + L+ E+           YN++I  +CK G + +AS + + M
Sbjct: 257 --------FCDCGELDRGKALFDEVLERGDSPCAITYNTLIRGFCKLGQLKEASEIFEFM 308

Query: 331 SMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEI 390
              G +PN  TY  L  G       +E  + L L ++       +   P   T   II  
Sbjct: 309 IERGVRPNVYTYTGLIDGLCGVGKTKEALQPLNLMIE-------KDEEPNAVTYNIIINK 361

Query: 391 FAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYV-KAKINDPNLLRRMILGGAR--- 446
             + G V +A  + E +KK         YN L+     K  +++ + L  ++L  +    
Sbjct: 362 LCKDGLVADAVEIVELMKKRRTRPDNITYNILLGGLCAKGDLDEASKLLYLMLKDSSYTD 421

Query: 447 PDAETYSLL 455
           PD  +Y+ L
Sbjct: 422 PDVISYNAL 430


>gi|255661136|gb|ACU25737.1| pentatricopeptide repeat-containing protein [Verbena macdougalii]
          Length = 426

 Score = 74.7 bits (182), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 83/376 (22%), Positives = 171/376 (45%), Gaps = 27/376 (7%)

Query: 98  YNNLVIACLDKGVIKLSLEYMKKM---RVLGHSISYLVFNRLIILNSSPGRRKTIPNILR 154
           Y+ L+     +G+   +L +++KM   RV G  + Y   + LI L+          +I  
Sbjct: 12  YSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLY---SNLIELSRKLCDYSKAISIFS 68

Query: 155 QMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVAR 214
           ++K     P +  ++ ++ +            + S+M+ + V PN  SY  L T +   +
Sbjct: 69  RLKRSGFTPDIVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTASYSTLLTMYVENK 128

Query: 215 LYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQEL---PNVRSKS 271
            +  A +    + +     + +T +++I +YG L   K+ ++++  ++++   PNV S +
Sbjct: 129 KFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYN 188

Query: 272 YVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMS 331
            +L +  +G       A  L+  MQ     +    YNS++ +Y K    +KA+ L++EM 
Sbjct: 189 TLLRV--YGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQ 246

Query: 332 MNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTL--SIIE 389
             G +PN+ITY         S ++    K  +L    +  +K+RSS   ++  L  ++I 
Sbjct: 247 NRGIEPNSITY---------STIISIWSKVGKLDRAAMLFQKLRSSGVDIDQVLYQTMIV 297

Query: 390 IFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKINDPN-LLRRMILGGARPD 448
            + + G V +A+ L  ELK+ +        + L+ A    +I +   + R+ I  G   D
Sbjct: 298 AYEKAGLVAHAKRLLHELKRPDNIPRDIAIHILVGA---GRIEEATWVFRQAIDAGEVKD 354

Query: 449 AETYS-LLKLAEQFQK 463
              +  ++ L  +++K
Sbjct: 355 ITVFERMIHLFSKYKK 370


>gi|9502388|gb|AAF88095.1|AC025417_23 T12C24.15 [Arabidopsis thaliana]
          Length = 735

 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 82/386 (21%), Positives = 163/386 (42%), Gaps = 40/386 (10%)

Query: 105 CLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPH 164
           CL+ G +  +LE + +M  +GH  + +  N L+      G+      ++ +M      P+
Sbjct: 153 CLE-GRVSEALELVDRMVEMGHKPTLITLNALVNGLCLNGKVSDAVLLIDRMVETGFQPN 211

Query: 165 VSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVE 224
             T+  ++K+          M++   M+  +++ + V Y I+     + +  ++   +  
Sbjct: 212 EVTYGPVLKVMCKSGQTALAMELLRKMEERKIKLDAVKYSIII--DGLCKDGSLDNAFNL 269

Query: 225 ALEKSMTGNNWSTLDVLIILYGYLAKGK-----DLERIWATVQELPNVRSKSYVLAIEAF 279
             E  + G     +    ++ G+   G+      L R     +  P+V + S +  I+ F
Sbjct: 270 FNEMEIKGFKADIIIYTTLIRGFCYAGRWDDGAKLLRDMIKRKITPDVVAFSAL--IDCF 327

Query: 280 GRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNA 339
            +  ++  AEEL  EM        T  Y S+I  +CK   +DKA+ +L  M   GC PN 
Sbjct: 328 VKEGKLREAEELHKEMIQRGISPDTVTYTSLIDGFCKENQLDKANHMLDLMVSKGCGPNI 387

Query: 340 ITYRHLALGCFKSNLVEEGFK----------------------------ALELGMKLITT 371
            T+  L  G  K+NL+++G +                             LE+  +L   
Sbjct: 388 RTFNILINGYCKANLIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKLEVAKELFQE 447

Query: 372 KKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKA-K 430
              R   P + +   +++   + G+   A  +FE+++K+       +YN +I     A K
Sbjct: 448 MVSRRVRPDIVSYKILLDGLCDNGEPEKALEIFEKIEKSKMELDIGIYNIIIHGMCNASK 507

Query: 431 INDP-NLLRRMILGGARPDAETYSLL 455
           ++D  +L   + L G +PD +TY+++
Sbjct: 508 VDDAWDLFCSLPLKGVKPDVKTYNIM 533



 Score = 62.4 bits (150), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 87/448 (19%), Positives = 183/448 (40%), Gaps = 40/448 (8%)

Query: 39  LQLNKRALEVMEWVIR--ERPYRPKELDYSYLLEFTIKNHGISQGEKLFCCIP--KDYQN 94
           L LN +  + +  + R  E  ++P E+ Y  +L+   K+   +   +L   +   K   +
Sbjct: 187 LCLNGKVSDAVLLIDRMVETGFQPNEVTYGPVLKVMCKSGQTALAMELLRKMEERKIKLD 246

Query: 95  ELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILR 154
            + Y+ ++      G +  +     +M + G     +++  LI      GR      +LR
Sbjct: 247 AVKYSIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIIIYTTLIRGFCYAGRWDDGAKLLR 306

Query: 155 QMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVAR 214
            M   K+ P V  F  L+     +  +    +++ +M +  + P+ V+Y  L        
Sbjct: 307 DMIKRKITPDVVAFSALIDCFVKEGKLREAEELHKEMIQRGISPDTVTYTSLIDGFCKEN 366

Query: 215 LYTVAETYVEALEKSMTGNNWSTLDVLIILY---GYLAKGKDLERIWATVQELPNVRSKS 271
               A   ++ +     G N  T ++LI  Y     +  G +L R  +    + +  + +
Sbjct: 367 QLDKANHMLDLMVSKGCGPNIRTFNILINGYCKANLIDDGLELFRKMSLRGVVAD--TVT 424

Query: 272 YVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMS 331
           Y   I+ F  + ++  A+EL+ EM S +       Y  ++   C NG  +KA  + +++ 
Sbjct: 425 YNTLIQGFCELGKLEVAKELFQEMVSRRVRPDIVSYKILLDGLCDNGEPEKALEIFEKIE 484

Query: 332 MNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIF 391
            +  + +   Y  +  G   ++ V++ +        L  +  ++   P ++T   +I   
Sbjct: 485 KSKMELDIGIYNIIIHGMCNASKVDDAW-------DLFCSLPLKGVKPDVKTYNIMIGGL 537

Query: 392 AEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYV-------KAKI----------NDP 434
            +KG +  A+ LF ++++  ++     YN LI+A++        AK+           D 
Sbjct: 538 CKKGSLSEADLLFRKMEEDGHSPNGCTYNILIRAHLGEGDATKSAKLIEEIKRCGFSVDA 597

Query: 435 NLLR-------RMILGGARPDAETYSLL 455
           + LR       RM+  G  PD  T++ L
Sbjct: 598 STLRFALSTLARMLKAGHEPDVFTFTTL 625



 Score = 62.4 bits (150), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 91/384 (23%), Positives = 162/384 (42%), Gaps = 36/384 (9%)

Query: 98  YNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMK 157
           ++ L+   + +G ++ + E  K+M   G S   + +  LI       +     ++L  M 
Sbjct: 320 FSALIDCFVKEGKLREAEELHKEMIQRGISPDTVTYTSLIDGFCKENQLDKANHMLDLMV 379

Query: 158 ADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHA-VARLY 216
           +    P++ TF+IL+      + I+  ++++  M    V  + V+Y  L      + +L 
Sbjct: 380 SKGCGPNIRTFNILINGYCKANLIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKLE 439

Query: 217 TVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKD------LERIWATVQELPNVRSK 270
              E + E + + +  +  S     I+L G    G+        E+I  +  EL      
Sbjct: 440 VAKELFQEMVSRRVRPDIVS---YKILLDGLCDNGEPEKALEIFEKIEKSKMELD---IG 493

Query: 271 SYVLAIEAFGRIAQVSRAEELW--LEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLK 328
            Y + I      ++V  A +L+  L ++ VK     + YN +I   CK G + +A  L +
Sbjct: 494 IYNIIIHGMCNASKVDDAWDLFCSLPLKGVKP--DVKTYNIMIGGLCKKGSLSEADLLFR 551

Query: 329 EMSMNGCKPNAITYR-----HLALG--CFKSNLVEE----GF--KALELGMKLITTKKVR 375
           +M  +G  PN  TY      HL  G     + L+EE    GF   A  L   L T  ++ 
Sbjct: 552 KMEEDGHSPNGCTYNILIRAHLGEGDATKSAKLIEEIKRCGFSVDASTLRFALSTLARML 611

Query: 376 SST--PWLETTLSIIEIFA--EKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKI 431
            +   P + T  +++  F   E   V +A  LF+ +K   Y      YNT+IK  +   +
Sbjct: 612 KAGHEPDVFTFTTLLRPFCLEENASVYDAPTLFKNMKAMGYKPNVVTYNTVIKGLLNGNM 671

Query: 432 --NDPNLLRRMILGGARPDAETYS 453
               P +L +M   G +P+A T S
Sbjct: 672 ISQVPGVLDQMFERGCQPNAVTKS 695



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 63/277 (22%), Positives = 113/277 (40%), Gaps = 16/277 (5%)

Query: 185 MKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIIL 244
           + ++ +M RS   P  + +  L +  A  + Y +     + +E     +N  TL ++I  
Sbjct: 57  VDLFQEMTRSRPRPRLIDFSRLFSVVARTKQYDLVLDLCKQMELKGIAHNLYTLSIMI-- 114

Query: 245 YGYLAKGKDLERIWATVQELPNV----RSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQ 300
                + + L   ++ + ++  +     + ++   I       +VS A EL   M  +  
Sbjct: 115 -NCCCRCRKLSLAFSAMGKIIKLGYEPDTVTFSTLINGLCLEGRVSEALELVDRMVEMGH 173

Query: 301 LKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFK 360
                  N++++  C NG +  A  L+  M   G +PN +TY     G     + + G  
Sbjct: 174 KPTLITLNALVNGLCLNGKVSDAVLLIDRMVETGFQPNEVTY-----GPVLKVMCKSGQT 228

Query: 361 ALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYN 420
           A  L M+L+   + R           II+   + G + NA NLF E++   +     +Y 
Sbjct: 229 A--LAMELLRKMEERKIKLDAVKYSIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIIIYT 286

Query: 421 TLIKAYVKAKINDPN--LLRRMILGGARPDAETYSLL 455
           TLI+ +  A   D    LLR MI     PD   +S L
Sbjct: 287 TLIRGFCYAGRWDDGAKLLRDMIKRKITPDVVAFSAL 323



 Score = 49.3 bits (116), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 55/257 (21%), Positives = 102/257 (39%), Gaps = 10/257 (3%)

Query: 98  YNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMK 157
           Y  L+    D G  + +LE  +K+      +   ++N +I    +  +     ++   + 
Sbjct: 460 YKILLDGLCDNGEPEKALEIFEKIEKSKMELDIGIYNIIIHGMCNASKVDDAWDLFCSLP 519

Query: 158 ADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYT 217
              V P V T++I++       ++     ++  M+     PN  +Y IL  AH      T
Sbjct: 520 LKGVKPDVKTYNIMIGGLCKKGSLSEADLLFRKMEEDGHSPNGCTYNILIRAHLGEGDAT 579

Query: 218 VAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSKSYVLAIE 277
            +   +E +++     + STL   +           L R+     E P+V + + +L   
Sbjct: 580 KSAKLIEEIKRCGFSVDASTLRFAL---------STLARMLKAGHE-PDVFTFTTLLRPF 629

Query: 278 AFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKP 337
                A V  A  L+  M+++        YN+VI        I +  G+L +M   GC+P
Sbjct: 630 CLEENASVYDAPTLFKNMKAMGYKPNVVTYNTVIKGLLNGNMISQVPGVLDQMFERGCQP 689

Query: 338 NAITYRHLALGCFKSNL 354
           NA+T      G  K +L
Sbjct: 690 NAVTKSTFISGLCKQDL 706


>gi|359491317|ref|XP_003634263.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g61400-like [Vitis vinifera]
          Length = 665

 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 76/350 (21%), Positives = 147/350 (42%), Gaps = 25/350 (7%)

Query: 94  NELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILN------SSPGRRK 147
           N + Y  L+  C  +G      +++K  R+    I   +F  ++I            R  
Sbjct: 192 NVVTYGTLIDGCCRQG------DFLKAFRLFDEMIEKKIFPTVVIYTILIRGLCGESRIS 245

Query: 148 TIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILA 207
              ++ R M+   + P++ T++ +M       +++  +++Y +M    + PN V++ IL 
Sbjct: 246 EAESMFRTMRNSGMLPNLYTYNTMMDGYCKIAHVKKALELYQEMLGDGLLPNVVTFGILI 305

Query: 208 TAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILY---GYLAKGKDLERIWATVQEL 264
                      A  ++  +       N    + LI  Y   G L++   L       + L
Sbjct: 306 DGLCKTDEMVSARKFLIDMASFGVVPNIFVYNCLIDGYCKAGNLSEALSLHSEIEKHEIL 365

Query: 265 PNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKAS 324
           P+V +  Y + I+    + ++  A+ L  EM+    L     YN++I  YCK G ++KA 
Sbjct: 366 PDVFT--YSILIKGLCGVDRMEEADGLLQEMKKKGFLPNAVTYNTLIDGYCKEGNMEKAI 423

Query: 325 GLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETT 384
            +  +M+  G +PN IT+  L  G  K+         +E  M L T   ++   P +   
Sbjct: 424 EVCSQMTEKGIEPNIITFSTLIDGYCKAG-------KMEAAMGLYTEMVIKGLLPDVVAY 476

Query: 385 LSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVK-AKIND 433
            ++I+   + G+   A  L +E+++A      F  + LI    K  +I+D
Sbjct: 477 TALIDGHFKDGNTKEAFRLHKEMQEAGLHPNVFTLSCLIDGLCKDGRISD 526



 Score = 61.6 bits (148), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 90/433 (20%), Positives = 180/433 (41%), Gaps = 32/433 (7%)

Query: 44  RALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQGEKLFCCIPKD--YQNELLYNNL 101
           +A  + + +I ++ + P  + Y+ L+        IS+ E +F  +       N   YN +
Sbjct: 211 KAFRLFDEMIEKKIF-PTVVIYTILIRGLCGESRISEAESMFRTMRNSGMLPNLYTYNTM 269

Query: 102 VIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKV 161
           +        +K +LE  ++M   G   + + F  LI          +    L  M +  V
Sbjct: 270 MDGYCKIAHVKKALELYQEMLGDGLLPNVVTFGILIDGLCKTDEMVSARKFLIDMASFGV 329

Query: 162 APHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAET 221
            P++  ++ L+       N+   + ++S++++ E+ P+  +Y IL            A+ 
Sbjct: 330 VPNIFVYNCLIDGYCKAGNLSEALSLHSEIEKHEILPDVFTYSILIKGLCGVDRMEEADG 389

Query: 222 YVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQEL------PNVRSKSYVLA 275
            ++ ++K     N  T + LI   GY  +G ++E+      ++      PN+ + S +  
Sbjct: 390 LLQEMKKKGFLPNAVTYNTLI--DGYCKEG-NMEKAIEVCSQMTEKGIEPNIITFSTL-- 444

Query: 276 IEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGC 335
           I+ + +  ++  A  L+ EM     L     Y ++I  + K+G   +A  L KEM   G 
Sbjct: 445 IDGYCKAGKMEAAMGLYTEMVIKGLLPDVVAYTALIDGHFKDGNTKEAFRLHKEMQEAGL 504

Query: 336 KPNAITYRHLALGCFKSNLVEEG--FKALELGMKLITTKKVRSSTPWLETTL-------- 385
            PN  T     L C    L ++G    A++L +    T    S T  L+ +L        
Sbjct: 505 HPNVFT-----LSCLIDGLCKDGRISDAIKLFLAKTGTDTTGSKTNELDRSLCSPNHVMY 559

Query: 386 -SIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKA-KINDPNLLRRMILG 443
            ++I+     G +  A   F +++ +      F    +I+ + +A  + D  +L+  IL 
Sbjct: 560 TALIQGLCTDGRIFKASKFFSDMRCSGLRPDVFTCIVIIQGHFRAMHLRDVMMLQADILK 619

Query: 444 -GARPDAETYSLL 455
            G  P++  Y +L
Sbjct: 620 MGIIPNSSVYRVL 632



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 81/338 (23%), Positives = 135/338 (39%), Gaps = 35/338 (10%)

Query: 132 VFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDM 191
           VF  LII  S  G  +    +  +M    V P +   ++++         + + KVY DM
Sbjct: 128 VFGVLIIAFSEMGLVEEALWVYYKMD---VLPAMQACNMVLDGLVKKGRFDTMWKVYGDM 184

Query: 192 KRSEVEPNEVSYCILATAHAVARLYTVA-ETYVEALEKSMTGNNWSTLDVLIILYGYLAK 250
                 PN V+Y  L         +  A   + E +EK +    + T    +++Y  L +
Sbjct: 185 VARGASPNVVTYGTLIDGCCRQGDFLKAFRLFDEMIEKKI----FPT----VVIYTILIR 236

Query: 251 G-------KDLERIWATVQE---LPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQ 300
           G        + E ++ T++    LPN+   +Y   ++ + +IA V +A EL+ EM     
Sbjct: 237 GLCGESRISEAESMFRTMRNSGMLPNLY--TYNTMMDGYCKIAHVKKALELYQEMLGDGL 294

Query: 301 LKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALG-CFKSNLVEEGF 359
           L     +  +I   CK   +  A   L +M+  G  PN   Y  L  G C   NL E   
Sbjct: 295 LPNVVTFGILIDGLCKTDEMVSARKFLIDMASFGVVPNIFVYNCLIDGYCKAGNLSE--- 351

Query: 360 KALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVY 419
                 + L +  +     P + T   +I+       +  A+ L +E+KK  +      Y
Sbjct: 352 -----ALSLHSEIEKHEILPDVFTYSILIKGLCGVDRMEEADGLLQEMKKKGFLPNAVTY 406

Query: 420 NTLIKAYVKAKINDP--NLLRRMILGGARPDAETYSLL 455
           NTLI  Y K    +    +  +M   G  P+  T+S L
Sbjct: 407 NTLIDGYCKEGNMEKAIEVCSQMTEKGIEPNIITFSTL 444



 Score = 47.8 bits (112), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 48/193 (24%), Positives = 81/193 (41%), Gaps = 16/193 (8%)

Query: 265 PNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKAS 324
           PNV    + + I AF  +  V   E LW+  + +  L A +  N V+    K G  D   
Sbjct: 126 PNV----FGVLIIAFSEMGLVE--EALWVYYK-MDVLPAMQACNMVLDGLVKKGRFDTMW 178

Query: 325 GLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETT 384
            +  +M   G  PN +TY  L  GC +     +  KA  L  ++I  K      P +   
Sbjct: 179 KVYGDMVARGASPNVVTYGTLIDGCCRQG---DFLKAFRLFDEMIEKKIF----PTVVIY 231

Query: 385 LSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVK-AKINDP-NLLRRMIL 442
             +I     +  +  AE++F  ++ +      + YNT++  Y K A +     L + M+ 
Sbjct: 232 TILIRGLCGESRISEAESMFRTMRNSGMLPNLYTYNTMMDGYCKIAHVKKALELYQEMLG 291

Query: 443 GGARPDAETYSLL 455
            G  P+  T+ +L
Sbjct: 292 DGLLPNVVTFGIL 304


>gi|255661194|gb|ACU25766.1| pentatricopeptide repeat-containing protein [Neosparton
           ephedroides]
          Length = 426

 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 74/322 (22%), Positives = 151/322 (46%), Gaps = 22/322 (6%)

Query: 98  YNNLVIACLDKGVIKLSLEYMKKM---RVLGHSISYLVFNRLIILNSSPGRRKTIPNILR 154
           Y+ L+     +G+   +L +++KM   RV G  + Y   + LI L+          +I  
Sbjct: 12  YSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLY---SNLIELSRKLCDYSKAISIFS 68

Query: 155 QMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVAR 214
           ++K    AP +  ++ ++ +            + ++M+ + V P+ VSY  L T H   +
Sbjct: 69  RLKRSGFAPDLVAYNSMINVFXKAKLFREARSLINEMRTAGVMPDTVSYTTLLTMHVENK 128

Query: 215 LYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQEL---PNVRSKS 271
            +  A +    + +     + +T +++I +YG L   K+ ++++  ++++   PNV S +
Sbjct: 129 RFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKIGIEPNVVSYN 188

Query: 272 YVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMS 331
            +L +  +G       A  L+  MQ     +    YNS++ +Y K    +KA+ L++EM 
Sbjct: 189 TLLRV--YGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQ 246

Query: 332 MNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTL--SIIE 389
             G +PN+ITY         S ++    K  +L    +  +K+R+S   ++  L  ++I 
Sbjct: 247 NRGIEPNSITY---------STIISIWVKVGKLDRAAMLFQKLRNSGVEIDQVLYQTMIV 297

Query: 390 IFAEKGDVGNAENLFEELKKAN 411
            +   G V +A+ L  ELK+ +
Sbjct: 298 AYERAGLVAHAKRLLHELKRPD 319



 Score = 40.8 bits (94), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 50/236 (21%), Positives = 94/236 (39%), Gaps = 41/236 (17%)

Query: 196 VEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLE 255
           + P+  +Y  L T      L+  A ++++ +E+     +       ++LY  L    +L 
Sbjct: 5   LSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGD-------LVLYSNLI---ELS 54

Query: 256 RIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYC 315
           R           +   Y  AI  F R+ +   A +L               YNS+I+V+ 
Sbjct: 55  R-----------KLCDYSKAISIFSRLKRSGFAPDLV-------------AYNSMINVFX 90

Query: 316 KNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVR 375
           K     +A  L+ EM   G  P+ ++Y  L        +  E  + LE        ++++
Sbjct: 91  KAKLFREARSLINEMRTAGVMPDTVSYTTLL------TMHVENKRFLEALSVFAEMREIK 144

Query: 376 SSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKI 431
                L T   +I+++ + G    A+ LF  ++K         YNTL++ Y  A++
Sbjct: 145 CLLD-LTTCNIMIDVYGQLGMAKEADKLFWGMRKIGIEPNVVSYNTLLRVYGDAEL 199


>gi|255551975|ref|XP_002517032.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223543667|gb|EEF45195.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 875

 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 95/404 (23%), Positives = 170/404 (42%), Gaps = 70/404 (17%)

Query: 98  YNNLVIACLDKGVIKLSLEYMKKM---RVLGHSISYLVFNRLIILNSSPGRRKTIPNILR 154
           YN ++      G IK + +   +M   R+L  +++   FN +I +  + G+ + +  +++
Sbjct: 333 YNTMIDTYGKAGQIKEASDIFAEMLRKRILPTTVT---FNTMIHICGNQGQLEEVALLMQ 389

Query: 155 QMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVAR 214
           +M+  +  P   T++IL+ I A  ++I      +  MK+ +++P+ VSY  L  A ++  
Sbjct: 390 KMEELRCPPDTRTYNILIFIHAKHNDINMAASYFKRMKKDQLQPDLVSYRTLLYAFSIRH 449

Query: 215 LYTVAET-----------------------YVEA--LEKS--------MTGNNWS-TLDV 240
           +   AE                        Y+EA  LEKS        + GN  S     
Sbjct: 450 MVNDAENLVSEMDEKGIEIDEYTQSALTRMYIEAGMLEKSWLWFWRFHLAGNMSSECYSA 509

Query: 241 LIILYGYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQ 300
            I  YG     K+  R++A   E   +    + + I+A+G      +A +L+  M+S   
Sbjct: 510 NIDAYGERGHVKEAARVFACRLEQNKLTVLEFNVMIKAYGFGKNYEKACDLFDSMESHGV 569

Query: 301 LKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITY-----RHLALGCFKSNLV 355
           +     Y+S++ +       DKA   LK+M   G   + + Y       + LG  K  + 
Sbjct: 570 VPDKCSYSSLVQILASADLPDKAKHYLKKMQEAGLVSDCVQYCAVISSFVKLG--KLEMA 627

Query: 356 EEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKY 415
           EE +K + +G  +          P +     +I  FA+ G V  A +  + +K A     
Sbjct: 628 EEVYKEM-VGFDV---------KPDIIVYGVLINAFADSGCVKEAISYIDAMKGAGLPGN 677

Query: 416 TFVYNTLIKAYVKAKINDPNLLRRMILGGARPDAETYSLLKLAE 459
           T +YN+LIK Y K             +G  R   ETY LL+ ++
Sbjct: 678 TVIYNSLIKLYTK-------------VGYLREAQETYKLLQSSD 708



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 76/351 (21%), Positives = 153/351 (43%), Gaps = 23/351 (6%)

Query: 35  RLRKLQLNKRALEVMEWVIRERPYR-PKELDYSYLLEFTIKNHGISQGEKLFCCIPKDYQ 93
           R+   +L +  L V+E+ +  + Y   K  + +  L  ++++HG+         +P    
Sbjct: 525 RVFACRLEQNKLTVLEFNVMIKAYGFGKNYEKACDLFDSMESHGV---------VP---- 571

Query: 94  NELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNIL 153
           ++  Y++LV       +   +  Y+KKM+  G     + +  +I      G+ +    + 
Sbjct: 572 DKCSYSSLVQILASADLPDKAKHYLKKMQEAGLVSDCVQYCAVISSFVKLGKLEMAEEVY 631

Query: 154 RQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHA-V 212
           ++M    V P +  + +L+   A+   ++  +     MK + +  N V Y  L   +  V
Sbjct: 632 KEMVGFDVKPDIIVYGVLINAFADSGCVKEAISYIDAMKGAGLPGNTVIYNSLIKLYTKV 691

Query: 213 ARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSKSY 272
             L    ETY + L+ S  G    + + +I LY   +  K  E I+ +++   +    +Y
Sbjct: 692 GYLREAQETY-KLLQSSDVGPETYSSNCMIDLYSEQSMVKPAEEIFESMKRKGDANEFTY 750

Query: 273 VLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSM 332
            + +  + R+    +A ++  +M+ +  L     YN+V+ +Y  +G   +A G  KEM  
Sbjct: 751 AMMLCMYKRLGWFEQAIQIAKQMRELGLLTYLLSYNNVLGLYALDGRFKEAVGTFKEMVG 810

Query: 333 NGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSS--TPWL 381
            G +P+  T++ L +   K  + ++    LE      TTKK R S    WL
Sbjct: 811 AGIQPDDCTFKSLGIVLVKCGISKQAVGKLE-----ATTKKDRHSGLQTWL 856



 Score = 58.9 bits (141), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 60/306 (19%), Positives = 134/306 (43%), Gaps = 24/306 (7%)

Query: 126 HSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLM 185
           + ++ + +N +I +     + + +  +  +M   +++P  ST+  L+ + +     E  +
Sbjct: 200 YELNVIHYNIMIRILGKAKQWRYLECLCNEMSFKRISPINSTYGTLIDVYSKGGLREKAL 259

Query: 186 KVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILY 245
                M +  +EP+EV+  I+   +  A  +  AE + +          WS  + L    
Sbjct: 260 DWLEKMNKQGMEPDEVTMGIVVQMYKKAGEFQKAEEFFK---------KWSLREAL---- 306

Query: 246 GYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATE 305
            +   GK   R+    Q   ++ S +Y   I+ +G+  Q+  A +++ EM   + L  T 
Sbjct: 307 RHKVTGKASVRVENERQMDVSLSSHTYNTMIDTYGKAGQIKEASDIFAEMLRKRILPTTV 366

Query: 306 QYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELG 365
            +N++I +    G +++ + L+++M    C P+  TY  L     K N         ++ 
Sbjct: 367 TFNTMIHICGNQGQLEEVALLMQKMEELRCPPDTRTYNILIFIHAKHN---------DIN 417

Query: 366 MKLITTKKVRSS--TPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLI 423
           M     K+++     P L +  +++  F+ +  V +AENL  E+ +       +  + L 
Sbjct: 418 MAASYFKRMKKDQLQPDLVSYRTLLYAFSIRHMVNDAENLVSEMDEKGIEIDEYTQSALT 477

Query: 424 KAYVKA 429
           + Y++A
Sbjct: 478 RMYIEA 483


>gi|225437600|ref|XP_002271180.1| PREDICTED: pentatricopeptide repeat-containing protein At2g31400,
           chloroplastic [Vitis vinifera]
          Length = 867

 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 78/339 (23%), Positives = 149/339 (43%), Gaps = 23/339 (6%)

Query: 125 GHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDH-NIEG 183
           G+  +   F+ LI      G       +   MK+  + P++ T++ ++        +   
Sbjct: 215 GYGNTVYAFSALISAYGRSGYCDEAIKVFETMKSSGLKPNLVTYNAVIDACGKGGVDFNR 274

Query: 184 LMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAET-YVEALEKSMTGNNWSTLDVLI 242
             +++ +M R+ V+P+ +++  L        L+  A   + E L + +  + + T + L+
Sbjct: 275 AAEIFDEMLRNGVQPDRITFNSLLAVCGRGGLWEAARNLFSEMLYRGIEQDIF-TYNTLL 333

Query: 243 ILYGYLAKGKDLERIWATVQELP------NVRSKSYVLAIEAFGRIAQVSRAEELWLEMQ 296
                + KG  ++  +  + E+P      NV + S V  I+ + +  ++  A  L+ EM+
Sbjct: 334 ---DAVCKGGQMDLAFQIMSEMPRKHIMPNVVTYSTV--IDGYAKAGRLDEALNLFNEMK 388

Query: 297 SVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVE 356
                     YN+++S+Y K G  ++A  + KEM  +G K +A+TY  L  G  K    E
Sbjct: 389 FASIGLDRVSYNTLLSIYAKLGRFEEALNVCKEMESSGIKKDAVTYNALLGGYGKQGKYE 448

Query: 357 EGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYT 416
           E  +  E         K     P L T  ++I+++++ G    A  +F E KKA      
Sbjct: 449 EVKRVFE-------EMKAERIFPNLLTYSTLIDVYSKGGLYQEAMEVFREFKKAGLKADV 501

Query: 417 FVYNTLIKAYVKAKINDP--NLLRRMILGGARPDAETYS 453
            +Y+ LI A  K  + +   + L  M   G RP+  TY+
Sbjct: 502 VLYSALIDALCKNGLVESAVSFLDEMTKEGIRPNVVTYN 540



 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 54/255 (21%), Positives = 118/255 (46%), Gaps = 5/255 (1%)

Query: 94  NELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNIL 153
           + + +N+L+  C   G+ + +     +M   G       +N L+      G+      I+
Sbjct: 290 DRITFNSLLAVCGRGGLWEAARNLFSEMLYRGIEQDIFTYNTLLDAVCKGGQMDLAFQIM 349

Query: 154 RQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVA 213
            +M    + P+V T+  ++   A    ++  + ++++MK + +  + VSY  L + +A  
Sbjct: 350 SEMPRKHIMPNVVTYSTVIDGYAKAGRLDEALNLFNEMKFASIGLDRVSYNTLLSIYAKL 409

Query: 214 RLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQE---LPNVRSK 270
             +  A    + +E S    +  T + L+  YG   K ++++R++  ++     PN+ + 
Sbjct: 410 GRFEEALNVCKEMESSGIKKDAVTYNALLGGYGKQGKYEEVKRVFEEMKAERIFPNLLTY 469

Query: 271 SYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEM 330
           S ++ + + G + Q   A E++ E +          Y+++I   CKNG ++ A   L EM
Sbjct: 470 STLIDVYSKGGLYQ--EAMEVFREFKKAGLKADVVLYSALIDALCKNGLVESAVSFLDEM 527

Query: 331 SMNGCKPNAITYRHL 345
           +  G +PN +TY  +
Sbjct: 528 TKEGIRPNVVTYNSI 542



 Score = 42.0 bits (97), Expect = 0.59,   Method: Compositional matrix adjust.
 Identities = 61/330 (18%), Positives = 136/330 (41%), Gaps = 24/330 (7%)

Query: 98  YNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMK 157
           YN L+      G  + +L   K+M   G     + +N L+      G+ + +  +  +MK
Sbjct: 399 YNTLLSIYAKLGRFEEALNVCKEMESSGIKKDAVTYNALLGGYGKQGKYEEVKRVFEEMK 458

Query: 158 ADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYT 217
           A+++ P++ T+  L+ + +     +  M+V+ + K++ ++ + V Y  L  A     L  
Sbjct: 459 AERIFPNLLTYSTLIDVYSKGGLYQEAMEVFREFKKAGLKADVVLYSALIDALCKNGLVE 518

Query: 218 VAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSKSYVLAIE 277
            A ++++ + K     N  T + +I  +G   +    E +     E    +  S  L + 
Sbjct: 519 SAVSFLDEMTKEGIRPNVVTYNSIIDAFG---RSGSAECVIDPPYETNVSKMSSSSLKVV 575

Query: 278 AFGRIAQVSRAEE-----LWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSM 332
                ++V   E+     ++ ++ + K   A ++      + C      K    + E+ +
Sbjct: 576 EDATESEVGDKEDNQIIKIFGQLAAEKTCHAKKENRGRQEILCILAVFHK----MHELDI 631

Query: 333 NGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFA 392
              KPN +T+  +   C + N  E+    LE  ++L   +    +   L      + +  
Sbjct: 632 ---KPNVVTFSAILNACSRCNSFEDASMLLE-ELRLFDNQVYGVAHGLLMGYGDNVWV-- 685

Query: 393 EKGDVGNAENLFEELKKANYTKYTFVYNTL 422
                  A++LF+E+K+ + +  +  YN L
Sbjct: 686 ------QAQSLFDEVKQMDSSTASAFYNAL 709


>gi|297743291|emb|CBI36158.3| unnamed protein product [Vitis vinifera]
          Length = 638

 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 60/229 (26%), Positives = 107/229 (46%), Gaps = 13/229 (5%)

Query: 231 TGNNWSTLDVLIILYGYLAKGKDL-ERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAE 289
           T N ++++ ++++  G+  K  +L   +      LP+  + S ++A  AFG++ +   A 
Sbjct: 193 TSNTYNSMILMLMQEGHHEKVHELYNEMCNEGDCLPDTVTYSALIA--AFGKLGRDDSAI 250

Query: 290 ELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGC 349
            L+ EM+        + Y +++ +Y K G ++KA GL++EM   GC     TY  L  G 
Sbjct: 251 SLFDEMKENGLHPTAKIYTTILGIYFKLGRVEKALGLVQEMKEKGCALTVYTYTELIKGV 310

Query: 350 FKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKK 409
            K+  VEE +      +K           P +    ++I +  + G + +A  LFEE++ 
Sbjct: 311 GKAGKVEEAYSIFMNMLK-------EGCKPDVVLINNLINLLGKAGRLADAIKLFEEMES 363

Query: 410 ANYTKYTFVYNTLIKAYVKAKINDPNLL---RRMILGGARPDAETYSLL 455
              T     YNT+IKA  ++K           +M   G  P + TYS+L
Sbjct: 364 LQCTPNVVTYNTVIKALFESKARASEAFLWYEKMKENGVVPSSFTYSIL 412



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 76/353 (21%), Positives = 144/353 (40%), Gaps = 19/353 (5%)

Query: 109 GVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTF 168
           G ++ +L  +++M+  G +++   +  LI      G+ +   +I   M  +   P V   
Sbjct: 279 GRVEKALGLVQEMKEKGCALTVYTYTELIKGVGKAGKVEEAYSIFMNMLKEGCKPDVVLI 338

Query: 169 HILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSY--CILATAHAVARLYTVAETYVEAL 226
           + L+ +      +   +K++ +M+  +  PN V+Y   I A   + AR    +E ++   
Sbjct: 339 NNLINLLGKAGRLADAIKLFEEMESLQCTPNVVTYNTVIKALFESKAR---ASEAFLWYE 395

Query: 227 EKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVR----SKSYVLAIEAFGRI 282
           +    G   S+    I++ G+  K   +E+    ++E+          +Y   I A G+ 
Sbjct: 396 KMKENGVVPSSFTYSILIDGF-CKTNRVEKALLLLEEMDEKGFAPCPAAYCSLINALGKA 454

Query: 283 AQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITY 342
            +   A EL+ E++      +   Y  +I    K G + +A  L  EM   GC P+   Y
Sbjct: 455 KRYEAANELFQELRENCGYSSARVYAVMIKHLGKCGRLSEAVDLFNEMKKLGCNPDVYAY 514

Query: 343 RHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAEN 402
             L  G  +  + +E          L+ T +    TP L +   I+  FA  G    A  
Sbjct: 515 NALMSGMVRVGMTDEAH-------SLLRTMEENGCTPDLNSHNIILNGFARTGGPKGAIE 567

Query: 403 LFEELKKANYTKYTFVYNTLIKAYVKAKIND--PNLLRRMILGGARPDAETYS 453
           +F  +K +        YNT++    +A + +    L++ M   G   D  TYS
Sbjct: 568 MFTRMKNSKIKPDVVSYNTVLGCLSRAGMFEEAAKLMKEMNSKGFEYDLITYS 620



 Score = 59.3 bits (142), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 71/340 (20%), Positives = 137/340 (40%), Gaps = 23/340 (6%)

Query: 98  YNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMK 157
           Y  L+      G ++ +      M   G     ++ N LI L    GR      +  +M+
Sbjct: 303 YTELIKGVGKAGKVEEAYSIFMNMLKEGCKPDVVLINNLINLLGKAGRLADAIKLFEEME 362

Query: 158 ADKVAPHVSTFHILMK--IEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARL 215
           + +  P+V T++ ++K   E+     E  +  Y  MK + V P+  +Y IL         
Sbjct: 363 SLQCTPNVVTYNTVIKALFESKARASEAFL-WYEKMKENGVVPSSFTYSILIDGFCKTNR 421

Query: 216 YTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPN----VRSKS 271
              A   +E +++       +    LI     L K K  E      QEL        ++ 
Sbjct: 422 VEKALLLLEEMDEKGFAPCPAAYCSLI---NALGKAKRYEAANELFQELRENCGYSSARV 478

Query: 272 YVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMS 331
           Y + I+  G+  ++S A +L+ EM+ +        YN+++S   + G  D+A  LL+ M 
Sbjct: 479 YAVMIKHLGKCGRLSEAVDLFNEMKKLGCNPDVYAYNALMSGMVRVGMTDEAHSLLRTME 538

Query: 332 MNGCKPNAITYRHLALGCFKSNLVEEGFK---ALELGMKLITTKKVRSSTPWLETTLSII 388
            NGC P+  ++          N++  GF      +  +++ T  K     P + +  +++
Sbjct: 539 ENGCTPDLNSH----------NIILNGFARTGGPKGAIEMFTRMKNSKIKPDVVSYNTVL 588

Query: 389 EIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVK 428
              +  G    A  L +E+    +      Y+++++A  K
Sbjct: 589 GCLSRAGMFEEAAKLMKEMNSKGFEYDLITYSSILEAVGK 628


>gi|356536609|ref|XP_003536829.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g23020-like [Glycine max]
          Length = 787

 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 87/394 (22%), Positives = 159/394 (40%), Gaps = 48/394 (12%)

Query: 98  YNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMK 157
           Y  L+      G    + E   ++   G +++ +  N +I L  + GR +    + ++M 
Sbjct: 249 YATLIDTYGKGGQFHAACETFARIIRQGRALNTVTLNTMIHLYGNCGRLRQACLLFQKMG 308

Query: 158 ADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYT 217
             +  P   T++IL+ +   ++ ++   K ++ MK++ +EP+ VSY  L  A++  ++  
Sbjct: 309 EFRCVPDTWTYNILISLNIKNNKVKLAAKYFARMKKAFLEPDVVSYRTLLYAYSTRKMVR 368

Query: 218 VAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQEL---PNVRSKSYVL 274
            AE  +  +++     +  T   L  +Y    +   LE+ W   +      N+ S  Y  
Sbjct: 369 EAEELIREMDERDLEIDEFTQSALTRMY---VESGMLEQSWLWFRRFHLAGNISSDCYSA 425

Query: 275 AIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNG 334
            I+A+G       AE++++  +  K+L   E +N +I  Y      DKA  L   M   G
Sbjct: 426 NIDAYGEWGYTLAAEKVFICCKEKKKLTVLE-FNVMIKAYGIGKCYDKACQLFDSMKKFG 484

Query: 335 CKPNAITYR------------HLALG-------------CFKSNLVEEGFKAL---ELGM 366
              +  +Y             HLA               C    +V   F  L   E+  
Sbjct: 485 VVADKCSYSSLIHILASADKPHLAKSYLKKMQEAGLVSDCVPYCVVISSFTKLGQFEMAE 544

Query: 367 KLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAY 426
           +L       +  P +      I  FA+ G V  A N   E++KA       +YN+LIK Y
Sbjct: 545 ELYKEMLGYAVQPDVIIYGVFINAFADAGSVKEAINYVNEMRKAGLPGNPAIYNSLIKLY 604

Query: 427 VKAKINDPNLLRRMILGGARPDAETYSLLKLAEQ 460
            K             +G  +   ETY L++L+++
Sbjct: 605 TK-------------VGYLKEAQETYKLIQLSDE 625



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 67/307 (21%), Positives = 126/307 (41%), Gaps = 46/307 (14%)

Query: 81  GEKLF-CCIPKDYQNELLYNNLVIA-----CLDKGVIKLSLEYMKKMRVLGHSISYLVFN 134
            EK+F CC  K     L +N ++ A     C DK       + MKK  V+    SY   +
Sbjct: 439 AEKVFICCKEKKKLTVLEFNVMIKAYGIGKCYDKAC--QLFDSMKKFGVVADKCSY---S 493

Query: 135 RLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRS 194
            LI + +S  +     + L++M+   +      + +++         E   ++Y +M   
Sbjct: 494 SLIHILASADKPHLAKSYLKKMQEAGLVSDCVPYCVVISSFTKLGQFEMAEELYKEMLGY 553

Query: 195 EVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILY---GYLAKG 251
            V+P+ + Y +   A A A     A  YV  + K+    N +  + LI LY   GYL + 
Sbjct: 554 AVQPDVIIYGVFINAFADAGSVKEAINYVNEMRKAGLPGNPAIYNSLIKLYTKVGYLKEA 613

Query: 252 KDLERIWATVQELPNVRSK--------------------------------SYVLAIEAF 279
           ++  ++     E P++ S                                 SY + +  +
Sbjct: 614 QETYKLIQLSDEGPSLFSSNCMIDLYTERLMVEQAKEIFESLMKNEVANEFSYAMMLCMY 673

Query: 280 GRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNA 339
            +I ++  A ++  +M+ +  L     YN+V+ +Y  +  + +A+   KEM  +G +P+ 
Sbjct: 674 KKIGRLDEAIQIATQMRRLGFLTDILSYNNVLGLYSMDRRLREATETFKEMIKSGVQPDD 733

Query: 340 ITYRHLA 346
            T+R LA
Sbjct: 734 FTFRALA 740



 Score = 45.4 bits (106), Expect = 0.059,   Method: Compositional matrix adjust.
 Identities = 61/278 (21%), Positives = 118/278 (42%), Gaps = 29/278 (10%)

Query: 187 VYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILY- 245
           ++++M    V P   +Y  L  A++   L   A  +++ ++      +  T+ ++++LY 
Sbjct: 148 LWTEMNAKGVAPVNSTYGTLIDAYSKGGLKEEALAWLQRMQSQGMEPDEVTMGIVVLLYK 207

Query: 246 --GYLAKGKDLERIWA-----------TVQELPNV--RSKSYVLAIEAFGRIAQVSRAEE 290
             G   K ++  R W             V    NV   S +Y   I+ +G+  Q   A E
Sbjct: 208 RAGEFQKAQEFFRRWMRGAPFRLGVDDKVVSHTNVCLSSHTYATLIDTYGKGGQFHAACE 267

Query: 291 LWLEMQSVKQLKA--TEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALG 348
            +  +  ++Q +A  T   N++I +Y   G + +A  L ++M    C P+  TY  L   
Sbjct: 268 TFARI--IRQGRALNTVTLNTMIHLYGNCGRLRQACLLFQKMGEFRCVPDTWTYNILISL 325

Query: 349 CFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELK 408
             K+N V       +L  K     K     P + +  +++  ++ +  V  AE L  E+ 
Sbjct: 326 NIKNNKV-------KLAAKYFARMKKAFLEPDVVSYRTLLYAYSTRKMVREAEELIREMD 378

Query: 409 KANYTKYTFVYNTLIKAYVKAKINDPNLL--RRMILGG 444
           + +     F  + L + YV++ + + + L  RR  L G
Sbjct: 379 ERDLEIDEFTQSALTRMYVESGMLEQSWLWFRRFHLAG 416



 Score = 43.1 bits (100), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 48/196 (24%), Positives = 76/196 (38%), Gaps = 14/196 (7%)

Query: 272 YVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMS 331
           Y + +   GR  +    E LW EM +         Y ++I  Y K G  ++A   L+ M 
Sbjct: 129 YNIMLCTLGRARKWDLVESLWTEMNAKGVAPVNSTYGTLIDAYSKGGLKEEALAWLQRMQ 188

Query: 332 MNGCKPNAITYRHLAL-----GCFKSNLVEEGFKALELG--MKLITTKKVRSSTPWL--- 381
             G +P+ +T   + L     G F+    +E F+    G   +L    KV S T      
Sbjct: 189 SQGMEPDEVTMGIVVLLYKRAGEFQK--AQEFFRRWMRGAPFRLGVDDKVVSHTNVCLSS 246

Query: 382 ETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKINDPNLLRRMI 441
            T  ++I+ + + G    A   F  + +      T   NT+I  Y          L    
Sbjct: 247 HTYATLIDTYGKGGQFHAACETFARIIRQGRALNTVTLNTMIHLYGNCGRLRQACLLFQK 306

Query: 442 LGGAR--PDAETYSLL 455
           +G  R  PD  TY++L
Sbjct: 307 MGEFRCVPDTWTYNIL 322


>gi|297746120|emb|CBI16176.3| unnamed protein product [Vitis vinifera]
          Length = 819

 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 93/448 (20%), Positives = 184/448 (41%), Gaps = 57/448 (12%)

Query: 21  GFPVHRGEIFHSINRLRKLQLNKRALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQ 80
           GF      + + ++ LRK      A +++  V ++    P    Y+ L+    K+  + +
Sbjct: 315 GFVPSEAAVSNLVDGLRKKGNIGSAFDLVNKV-KKFGVAPSLFVYNALINSMCKDGKLDE 373

Query: 81  GEKLFCCIPKD--YQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLII 138
            E LF  +     + N++ Y+ L+ +   +G + ++L ++ KM  +G   +   ++ LI 
Sbjct: 374 AESLFNNMGHKGLFPNDVTYSILIDSFCKRGKLDVALHFLGKMTEVGIKATVYPYSSLIS 433

Query: 139 LNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEP 198
            +   G+ +   ++  +M A+ + P+V  +  L+     +  +    ++Y +M    + P
Sbjct: 434 GHCKLGKLRAAKSLFDEMIANGLKPNVVIYTSLISGYCKEGELHNAFRLYHEMTGKGISP 493

Query: 199 NEVSYCILATAHAVA-RLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERI 257
           N  ++  L +    A R+    + + E +E       W+                     
Sbjct: 494 NTYTFTALISGLCHANRMAEANKLFGEMVE-------WNV-------------------- 526

Query: 258 WATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKN 317
                 +PN    +Y + IE   +     RA EL  EM     +  T  Y  +IS  C  
Sbjct: 527 ------IPN--EVTYNVLIEGHCKEGNTVRAFELLDEMVEKGLVPDTYTYRPLISGLCST 578

Query: 318 GFIDKASGLLKEMS--------MNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLI 369
           G + +A   + ++         + GC PN +TY  L  G  K  L++   KA  L  +++
Sbjct: 579 GRVSEAREFMNDLQGEQQKLNEIEGCLPNVVTYTALINGLCKIGLMD---KAELLCREML 635

Query: 370 TTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVK- 428
            +    +S P   T    ++    +G++  A  L + L +  +   T  YN LI+ + K 
Sbjct: 636 AS----NSLPNQNTYACFLDYLTSEGNIEKAIQLHDVLLEG-FLANTVTYNILIRGFCKL 690

Query: 429 AKIND-PNLLRRMILGGARPDAETYSLL 455
            +I +   +L  MI  G  PD  +YS +
Sbjct: 691 GRIQEAAEVLVNMIDSGISPDCISYSTI 718



 Score = 53.5 bits (127), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 50/186 (26%), Positives = 83/186 (44%), Gaps = 9/186 (4%)

Query: 272 YVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMS 331
           Y   + +   +    RA E+   M+S     +   YN  I   CKN  + +A  +   +S
Sbjct: 218 YTAVVRSLCELKDFIRAREVIGRMESSGCDLSVATYNVFIRGLCKNQRVWEAVEIKNLLS 277

Query: 332 MNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIF 391
             G + +  TY  L LG  K   VEE     E G +++         P      ++++  
Sbjct: 278 YKGLRADVGTYCTLVLGLCK---VEE----FEAGEEMMNEMIEFGFVPSEAAVSNLVDGL 330

Query: 392 AEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVK-AKINDP-NLLRRMILGGARPDA 449
            +KG++G+A +L  ++KK       FVYN LI +  K  K+++  +L   M   G  P+ 
Sbjct: 331 RKKGNIGSAFDLVNKVKKFGVAPSLFVYNALINSMCKDGKLDEAESLFNNMGHKGLFPND 390

Query: 450 ETYSLL 455
            TYS+L
Sbjct: 391 VTYSIL 396



 Score = 43.1 bits (100), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 49/241 (20%), Positives = 96/241 (39%), Gaps = 14/241 (5%)

Query: 131 LVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSD 190
           + +N LI  +   G       +L +M    + P   T+  L+    +   +    +  +D
Sbjct: 531 VTYNVLIEGHCKEGNTVRAFELLDEMVEKGLVPDTYTYRPLISGLCSTGRVSEAREFMND 590

Query: 191 M-----KRSEVE---PNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLI 242
           +     K +E+E   PN V+Y  L        L   AE     +  S +  N +T    +
Sbjct: 591 LQGEQQKLNEIEGCLPNVVTYTALINGLCKIGLMDKAELLCREMLASNSLPNQNTYACFL 650

Query: 243 ILYGYLAKGKDLER---IWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVK 299
               YL    ++E+   +   + E     + +Y + I  F ++ ++  A E+ + M    
Sbjct: 651 ---DYLTSEGNIEKAIQLHDVLLEGFLANTVTYNILIRGFCKLGRIQEAAEVLVNMIDSG 707

Query: 300 QLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGF 359
                  Y+++I  YC+ G + +A  L + M   G  P+ + Y  L  GC  +  + + F
Sbjct: 708 ISPDCISYSTIIYEYCRRGDLKEAIKLWESMLNRGVNPDTVAYNFLIYGCCVTGELTKAF 767

Query: 360 K 360
           +
Sbjct: 768 E 768



 Score = 40.0 bits (92), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 72/336 (21%), Positives = 125/336 (37%), Gaps = 65/336 (19%)

Query: 37  RKLQLNKRALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQGEKLF------CCIPK 90
           R  + NK   E++EW +      P E+ Y+ L+E   K     +  +L         +P 
Sbjct: 510 RMAEANKLFGEMVEWNVI-----PNEVTYNVLIEGHCKEGNTVRAFELLDEMVEKGLVPD 564

Query: 91  DYQNELLYNNLVIACLDKGVIKLSLEYMKKMR--------VLGHSISYLVFNRLIILNSS 142
            Y     Y  L+      G +  + E+M  ++        + G   + + +  LI     
Sbjct: 565 TYT----YRPLISGLCSTGRVSEAREFMNDLQGEQQKLNEIEGCLPNVVTYTALINGLCK 620

Query: 143 PGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVS 202
            G       + R+M A    P+ +T+   +    ++ NIE  ++++ D+       N V+
Sbjct: 621 IGLMDKAELLCREMLASNSLPNQNTYACFLDYLTSEGNIEKAIQLH-DVLLEGFLANTVT 679

Query: 203 YCILATAHA-VARLYTVAETYVEALEKSMTGN--NWSTLDVLIILYGYLAKGKDLERIWA 259
           Y IL      + R+   AE  V  ++  ++ +  ++ST     I+Y Y  +G        
Sbjct: 680 YNILIRGFCKLGRIQEAAEVLVNMIDSGISPDCISYST-----IIYEYCRRG-------- 726

Query: 260 TVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGF 319
                                    +  A +LW  M +      T  YN +I   C  G 
Sbjct: 727 ------------------------DLKEAIKLWESMLNRGVNPDTVAYNFLIYGCCVTGE 762

Query: 320 IDKASGLLKEMSMNGCKPNAITYRHLALG-CFKSNL 354
           + KA  L  +M   G KPN  TY  L  G C  S++
Sbjct: 763 LTKAFELRDDMMRRGVKPNRATYNSLIHGTCLMSSV 798


>gi|255555231|ref|XP_002518652.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223542033|gb|EEF43577.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 827

 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 68/337 (20%), Positives = 142/337 (42%), Gaps = 16/337 (4%)

Query: 74  KNHGISQGEKLFCCIPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVF 133
           K  G+  G K     P DY     YN L+  C    + + + +  ++M++ G S   + F
Sbjct: 271 KISGLVHGMKSSGVAPDDYT----YNTLISCCRRGSLYEEAAQVFEEMKLSGFSPDKVTF 326

Query: 134 NRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKR 193
           N L+ +     R K    +L++M+    +P + T++ L+   A D  +   M++   M  
Sbjct: 327 NTLLDVYGKSRRPKEAMEVLKEMEFSGFSPSIVTYNSLISAYARDGLLREAMELKDQMVE 386

Query: 194 SEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKD 253
             ++P+  +Y  L +    A +   A      +  +    N  T + LI ++G   +  +
Sbjct: 387 KGIKPDVFTYTTLLSGFEKAGMDEPAMRIFGEMRAAGCKPNICTFNALIKMHGNRGRFAE 446

Query: 254 LERIWATVQEL---PNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSV 310
           + +++  ++     P++ + + +LA+  FG+    S    ++ EM+    +   + +N++
Sbjct: 447 MMKVFEEIEICNCAPDIVTWNTLLAV--FGQNGMDSEVSGVFKEMKRAGFVPERDTFNTL 504

Query: 311 ISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLIT 370
           IS Y + G   +A  + K M   G  P+  +Y  +     +  L E+         K+  
Sbjct: 505 ISAYSRCGSFQQAMAVYKRMLEAGVTPDLSSYNAVLAALARGGLWEQ-------SEKVFA 557

Query: 371 TKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEEL 407
             K     P   T  S++  +A   ++     L EE+
Sbjct: 558 EMKDGRCKPNELTYCSLLHAYANSKEIERMHTLAEEI 594



 Score = 67.4 bits (163), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 65/278 (23%), Positives = 114/278 (41%), Gaps = 39/278 (14%)

Query: 118 MKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEAN 177
            K+M+  G       FN LI   S  G  +    + ++M    V P +S+++ ++   A 
Sbjct: 486 FKEMKRAGFVPERDTFNTLISAYSRCGSFQQAMAVYKRMLEAGVTPDLSSYNAVLAALAR 545

Query: 178 DHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHA----VARLYTVAETYVEALE------ 227
               E   KV+++MK    +PNE++YC L  A+A    + R++T+AE     L       
Sbjct: 546 GGLWEQSEKVFAEMKDGRCKPNELTYCSLLHAYANSKEIERMHTLAEEIYSGLTEPVPVL 605

Query: 228 ------------------------KSMTGNNWSTLDVLIILYG---YLAKGKDLERIWAT 260
                                   K     + STL+ +I +YG    +AK  ++      
Sbjct: 606 LKTLVLVNSKCDLLMETEHAFEELKKKGSPDLSTLNAMIAIYGRRQMVAKANEILNFMNE 665

Query: 261 VQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFI 320
               P++ + + ++ + +  R     R+EE+  E+ +         YN+VI  YC+NG +
Sbjct: 666 SGFSPSLATYNSLMYMHS--RSENFERSEEVLKEILAKGLKPDLISYNTVIFAYCRNGRM 723

Query: 321 DKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEG 358
             AS +   M   G  P+ ITY          +L E+ 
Sbjct: 724 KDASRIFSYMKTYGLVPDVITYNTFVASYAADSLFEDA 761



 Score = 53.5 bits (127), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 66/358 (18%), Positives = 137/358 (38%), Gaps = 69/358 (19%)

Query: 164 HVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYV 223
           + S   +++ +   +  +     + +++++   + +  +Y  L TA+A    Y  A    
Sbjct: 181 NCSVVAVIITMLGKEGKVSAASSILNNLRKDGFDLDVYAYTSLITAYASNGRYRDAVLVF 240

Query: 224 EALEKSMTGNNWSTLDVLIILYGYLA---------------------------------K 250
           + +E+        T +V++ +YG +                                  +
Sbjct: 241 KKMEEEGCKPTLITYNVILNVYGKMGMPWSKISGLVHGMKSSGVAPDDYTYNTLISCCRR 300

Query: 251 GKDLERIWATVQELP----NVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQ 306
           G   E      +E+     +    ++   ++ +G+  +   A E+  EM+      +   
Sbjct: 301 GSLYEEAAQVFEEMKLSGFSPDKVTFNTLLDVYGKSRRPKEAMEVLKEMEFSGFSPSIVT 360

Query: 307 YNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEG-------- 358
           YNS+IS Y ++G + +A  L  +M   G KP+  TY  L  G  K+ + E          
Sbjct: 361 YNSLISAYARDGLLREAMELKDQMVEKGIKPDVFTYTTLLSGFEKAGMDEPAMRIFGEMR 420

Query: 359 ----------FKAL-----------ELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDV 397
                     F AL           E+ MK+    ++ +  P + T  +++ +F + G  
Sbjct: 421 AAGCKPNICTFNALIKMHGNRGRFAEM-MKVFEEIEICNCAPDIVTWNTLLAVFGQNGMD 479

Query: 398 GNAENLFEELKKANYTKYTFVYNTLIKAYVKAKINDPNL--LRRMILGGARPDAETYS 453
                +F+E+K+A +      +NTLI AY +       +   +RM+  G  PD  +Y+
Sbjct: 480 SEVSGVFKEMKRAGFVPERDTFNTLISAYSRCGSFQQAMAVYKRMLEAGVTPDLSSYN 537



 Score = 50.8 bits (120), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 60/244 (24%), Positives = 97/244 (39%), Gaps = 16/244 (6%)

Query: 222 YVEALEKSMTGNNWSTL--DVLIIL--YGYLAKGKDLERIWATVQELPNVRS----KSYV 273
           Y    E S++   W++L  DVL I+   G+  K      +++ V+E  +  S        
Sbjct: 127 YYHKEELSLSSGTWNSLSMDVLGIIKGLGFYKKCDMAMSVFSWVREREDFESVLNCSVVA 186

Query: 274 LAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMN 333
           + I   G+  +VS A  +   ++          Y S+I+ Y  NG    A  + K+M   
Sbjct: 187 VIITMLGKEGKVSAASSILNNLRKDGFDLDVYAYTSLITAYASNGRYRDAVLVFKKMEEE 246

Query: 334 GCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAE 393
           GCKP  ITY  +     K  +       L  GM      K     P   T  ++I     
Sbjct: 247 GCKPTLITYNVILNVYGKMGMPWSKISGLVHGM------KSSGVAPDDYTYNTLISCCRR 300

Query: 394 KGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKINDPNL--LRRMILGGARPDAET 451
                 A  +FEE+K + ++     +NTL+  Y K++     +  L+ M   G  P   T
Sbjct: 301 GSLYEEAAQVFEEMKLSGFSPDKVTFNTLLDVYGKSRRPKEAMEVLKEMEFSGFSPSIVT 360

Query: 452 YSLL 455
           Y+ L
Sbjct: 361 YNSL 364



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 60/260 (23%), Positives = 108/260 (41%), Gaps = 44/260 (16%)

Query: 234 NWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRI----AQVSRAE 289
           N S + V+I + G   K      + A    L N+R   + L + A+  +    A   R  
Sbjct: 181 NCSVVAVIITMLGKEGK------VSAASSILNNLRKDGFDLDVYAYTSLITAYASNGRYR 234

Query: 290 ELWLEMQSVKQ--LKATE-QYNSVISVYCKNGFI-DKASGLLKEMSMNGCKPNAITYRHL 345
           +  L  + +++   K T   YN +++VY K G    K SGL+  M  +G  P+  TY  L
Sbjct: 235 DAVLVFKKMEEEGCKPTLITYNVILNVYGKMGMPWSKISGLVHGMKSSGVAPDDYTYNTL 294

Query: 346 ALGCFKSNLVEEG---FKALEL-------------------------GMKLITTKKVRSS 377
              C + +L EE    F+ ++L                          M+++   +    
Sbjct: 295 ISCCRRGSLYEEAAQVFEEMKLSGFSPDKVTFNTLLDVYGKSRRPKEAMEVLKEMEFSGF 354

Query: 378 TPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKINDP--N 435
           +P + T  S+I  +A  G +  A  L +++ +       F Y TL+  + KA +++P   
Sbjct: 355 SPSIVTYNSLISAYARDGLLREAMELKDQMVEKGIKPDVFTYTTLLSGFEKAGMDEPAMR 414

Query: 436 LLRRMILGGARPDAETYSLL 455
           +   M   G +P+  T++ L
Sbjct: 415 IFGEMRAAGCKPNICTFNAL 434


>gi|147742764|gb|ABQ50546.1| hypothetical protein [Brassica rapa]
          Length = 650

 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 89/431 (20%), Positives = 182/431 (42%), Gaps = 68/431 (15%)

Query: 58  YRPKELDYSYLLE-FTIKNHGISQGEKLFCCIPKDYQNELLYNNLVI--ACLDKGVIKLS 114
           Y P  + ++ LL    ++       E + C +   +  +L+  N ++   CL K  +  +
Sbjct: 156 YEPNTVTFNTLLNGLCLEGRVFEAVELVDCMVLSQHVPDLITLNTIVNGLCL-KDRVSEA 214

Query: 115 LEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKI 174
           ++ + +M   G   +   +  ++      G   +  ++LR+M+  K+ PHV T+ I++  
Sbjct: 215 VDLIARMMANGCQPNQFTYGPILNRMCKSGNTASALDLLRKMEHRKIKPHVVTYTIIIDN 274

Query: 175 EANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNN 234
              D  ++  +  +S+M+   ++ N  +Y                         S+ G+ 
Sbjct: 275 LCKDGRLDDALSFFSEMETKGIKANVFTY------------------------NSLIGSF 310

Query: 235 WSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLE 294
            S        +G    G  L R   T +  PNV + S +  I++  +  +++ A++L+ E
Sbjct: 311 CS--------FGRWDDGAQLLRDMITRKITPNVVTFSAL--IDSLVKEGKLTEAKDLYNE 360

Query: 295 MQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNL 354
           M +      T  YNS+I   C +  +D+A+ ++  M   GC P+  TY  L  G  K+  
Sbjct: 361 MITRGIEPNTITYNSLIYGLCNDKRLDEANQMMDLMVSKGCDPDIWTYNILINGFCKAKQ 420

Query: 355 VEEG---FKALEL-GM------------------KLITTKKV------RSSTPWLETTLS 386
           V++G   F+ + L GM                  KLI  KKV      +   P + T   
Sbjct: 421 VDDGMRLFRKMSLRGMIADTVTYSTLIQGFCQSRKLIVAKKVFQEMVSQGVHPGIMTYAI 480

Query: 387 IIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKA-KINDP-NLLRRMILGG 444
           +++   + G++  A  + +++ K        +YN +I     A K++D  +L   +   G
Sbjct: 481 LLDGLCDNGELEEALGILDQMHKCKMELDIGIYNIIIHGMCNANKVDDAWSLFCSLPSKG 540

Query: 445 ARPDAETYSLL 455
            + D ++Y+++
Sbjct: 541 VKRDIQSYNIM 551



 Score = 63.9 bits (154), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 74/354 (20%), Positives = 146/354 (41%), Gaps = 11/354 (3%)

Query: 105 CLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPH 164
           C D G +  +L +  +M   G   +   +N LI    S GR      +LR M   K+ P+
Sbjct: 276 CKD-GRLDDALSFFSEMETKGIKANVFTYNSLIGSFCSFGRWDDGAQLLRDMITRKITPN 334

Query: 165 VSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVE 224
           V TF  L+     +  +     +Y++M    +EPN ++Y  L       +    A   ++
Sbjct: 335 VVTFSALIDSLVKEGKLTEAKDLYNEMITRGIEPNTITYNSLIYGLCNDKRLDEANQMMD 394

Query: 225 ALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSK-SYVLAIEAFGRIA 283
            +       +  T ++LI  +    +  D  R++  +     +    +Y   I+ F +  
Sbjct: 395 LMVSKGCDPDIWTYNILINGFCKAKQVDDGMRLFRKMSLRGMIADTVTYSTLIQGFCQSR 454

Query: 284 QVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYR 343
           ++  A++++ EM S         Y  ++   C NG +++A G+L +M     + +   Y 
Sbjct: 455 KLIVAKKVFQEMVSQGVHPGIMTYAILLDGLCDNGELEEALGILDQMHKCKMELDIGIYN 514

Query: 344 HLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENL 403
            +  G   +N V++ +         + +K V+         LS +    ++  +  A+ L
Sbjct: 515 IIIHGMCNANKVDDAWSLF----CSLPSKGVKRDIQSYNIMLSGL---CKRSSLSEADAL 567

Query: 404 FEELKKANYTKYTFVYNTLIKAYVKAK--INDPNLLRRMILGGARPDAETYSLL 455
           F ++K+  Y      YNTLI+A+++         L+  M   G   DA T  ++
Sbjct: 568 FRKMKEDGYEPDGCTYNTLIRAHLRGNDITTSVQLIEEMKRCGFSSDASTVKIV 621


>gi|224125496|ref|XP_002319601.1| predicted protein [Populus trichocarpa]
 gi|222857977|gb|EEE95524.1| predicted protein [Populus trichocarpa]
          Length = 460

 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 76/367 (20%), Positives = 157/367 (42%), Gaps = 22/367 (5%)

Query: 98  YNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMK 157
           +N L+     K  I  +++   +M  +GH    + ++ +I      G       +L++M+
Sbjct: 13  FNTLLSGLCSKAKIMDAVKLFDEMVKMGHEPDVITYSTIINGLCKMGNTTMALQLLKKME 72

Query: 158 ADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYC-ILATAHAVARLY 216
                P+V  ++ ++     D  +   M  +S+M +  + P+  +Y  IL     + R+ 
Sbjct: 73  EKGCKPNVVAYNTIIDSLCKDRLVTEAMDFFSEMVKEGIPPDVFTYSSILHGFCNLGRVN 132

Query: 217 TVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQEL------PNVRSK 270
                + + +E+++  N  +      IL   L K + +   W   + +      P+V + 
Sbjct: 133 EATSLFKQMVERNVIPNKVT----FTILIDGLCKKRMISEAWLVFETMTEKGLEPDVYT- 187

Query: 271 SYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEM 330
            Y   ++ +   +Q+  A++L+  M           YN +I+ +CK+G ID+A GLL EM
Sbjct: 188 -YNALVDGYCSRSQMDEAQKLFNIMDRKGCAPNVRSYNILINGHCKSGRIDEAKGLLAEM 246

Query: 331 SMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEI 390
           S     P+  TY  L  G  +    +E   A EL  ++ +   +    P L T   +++ 
Sbjct: 247 SHKSLTPDIFTYSTLMRGFCQVGRPQE---AQELLKEMCSYGLL----PNLITYSIVLDG 299

Query: 391 FAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVK-AKINDP-NLLRRMILGGARPD 448
             + G +  A  L + ++++      F+Y  LI+      K+     L   + + G +P 
Sbjct: 300 LCKHGHLDEAFELLKAMQESKIEPNIFIYTILIEGMCTFGKLEAARELFSNLFVKGIQPT 359

Query: 449 AETYSLL 455
             TY+++
Sbjct: 360 VVTYTVM 366



 Score = 73.2 bits (178), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 79/371 (21%), Positives = 152/371 (40%), Gaps = 22/371 (5%)

Query: 94  NELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNIL 153
           N + YN ++ +     ++  ++++  +M   G       ++ ++    + GR     ++ 
Sbjct: 79  NVVAYNTIIDSLCKDRLVTEAMDFFSEMVKEGIPPDVFTYSSILHGFCNLGRVNEATSLF 138

Query: 154 RQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVA 213
           +QM    V P+  TF IL+        I     V+  M    +EP+  +Y  L   +   
Sbjct: 139 KQMVERNVIPNKVTFTILIDGLCKKRMISEAWLVFETMTEKGLEPDVYTYNALVDGYCSR 198

Query: 214 RLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQEL------PNV 267
                A+     +++     N  + ++LI   G+   G+ ++     + E+      P++
Sbjct: 199 SQMDEAQKLFNIMDRKGCAPNVRSYNILI--NGHCKSGR-IDEAKGLLAEMSHKSLTPDI 255

Query: 268 RSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLL 327
            +  Y   +  F ++ +   A+EL  EM S   L     Y+ V+   CK+G +D+A  LL
Sbjct: 256 FT--YSTLMRGFCQVGRPQEAQELLKEMCSYGLLPNLITYSIVLDGLCKHGHLDEAFELL 313

Query: 328 KEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSI 387
           K M  +  +PN   Y  L  G          F  LE   +L +   V+   P + T   +
Sbjct: 314 KAMQESKIEPNIFIYTILIEGMCT-------FGKLEAARELFSNLFVKGIQPTVVTYTVM 366

Query: 388 IEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKINDPN---LLRRMILGG 444
           I    + G    A  LF E+        +  YN +I+ +++   + PN   L+  M+  G
Sbjct: 367 ISGLLKGGLSNEACELFREMAVNGCLPNSCTYNVIIQGFLRNG-DTPNAVRLIEEMVGKG 425

Query: 445 ARPDAETYSLL 455
              D+ T+ +L
Sbjct: 426 FSADSSTFRML 436



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 64/304 (21%), Positives = 125/304 (41%), Gaps = 26/304 (8%)

Query: 163 PHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETY 222
           P + TF+ L+    +   I   +K++ +M +   EP+ ++Y  +          T+A   
Sbjct: 8   PTLVTFNTLLSGLCSKAKIMDAVKLFDEMVKMGHEPDVITYSTIINGLCKMGNTTMALQL 67

Query: 223 VEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQEL------PNVRSKSYVLAI 276
           ++ +E+     N    + +I     L K + +        E+      P+V + S +L  
Sbjct: 68  LKKMEEKGCKPNVVAYNTII---DSLCKDRLVTEAMDFFSEMVKEGIPPDVFTYSSIL-- 122

Query: 277 EAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCK 336
             F  + +V+ A  L+ +M     +     +  +I   CK   I +A  + + M+  G +
Sbjct: 123 HGFCNLGRVNEATSLFKQMVERNVIPNKVTFTILIDGLCKKRMISEAWLVFETMTEKGLE 182

Query: 337 PNAITYRHLALG-CFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKG 395
           P+  TY  L  G C +S + E          KL      +   P + +   +I    + G
Sbjct: 183 PDVYTYNALVDGYCSRSQMDE--------AQKLFNIMDRKGCAPNVRSYNILINGHCKSG 234

Query: 396 DVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKINDPN----LLRRMILGGARPDAET 451
            +  A+ L  E+   + T   F Y+TL++ +   ++  P     LL+ M   G  P+  T
Sbjct: 235 RIDEAKGLLAEMSHKSLTPDIFTYSTLMRGF--CQVGRPQEAQELLKEMCSYGLLPNLIT 292

Query: 452 YSLL 455
           YS++
Sbjct: 293 YSIV 296



 Score = 55.1 bits (131), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 83/388 (21%), Positives = 156/388 (40%), Gaps = 70/388 (18%)

Query: 33  INRLRKLQLNKRALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQGEKLFC-----C 87
           IN L K+     AL++++  + E+  +P  + Y+ +++   K+  +++    F       
Sbjct: 52  INGLCKMGNTTMALQLLKK-MEEKGCKPNVVAYNTIIDSLCKDRLVTEAMDFFSEMVKEG 110

Query: 88  IPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKM---RVLGHSISYLVFNRLIILNSSPG 144
           IP D      Y++++    + G +  +    K+M    V+ + +++       IL     
Sbjct: 111 IPPDV---FTYSSILHGFCNLGRVNEATSLFKQMVERNVIPNKVTF------TILIDGLC 161

Query: 145 RRKTIPN---ILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEV 201
           +++ I     +   M    + P V T++ L+    +   ++   K+++ M R    PN  
Sbjct: 162 KKRMISEAWLVFETMTEKGLEPDVYTYNALVDGYCSRSQMDEAQKLFNIMDRKGCAPNVR 221

Query: 202 SYCILATAHA-VARLYTVAETYVEALEKSMTGN--NWSTLDVLIILYGYLAKGKDLERIW 258
           SY IL   H    R+        E   KS+T +   +STL       G   + ++L +  
Sbjct: 222 SYNILINGHCKSGRIDEAKGLLAEMSHKSLTPDIFTYSTLMRGFCQVGRPQEAQELLKEM 281

Query: 259 ATVQELPNVRSKS---------------------------------YVLAIEAFGRIAQV 285
            +   LPN+ + S                                 Y + IE      ++
Sbjct: 282 CSYGLLPNLITYSIVLDGLCKHGHLDEAFELLKAMQESKIEPNIFIYTILIEGMCTFGKL 341

Query: 286 SRAEELWLEMQSVKQLKATE-QYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRH 344
             A EL+  +  VK ++ T   Y  +IS   K G  ++A  L +EM++NGC PN+ TY  
Sbjct: 342 EAARELFSNL-FVKGIQPTVVTYTVMISGLLKGGLSNEACELFREMAVNGCLPNSCTYNV 400

Query: 345 LALGCFKSN-------LVEE----GFKA 361
           +  G  ++        L+EE    GF A
Sbjct: 401 IIQGFLRNGDTPNAVRLIEEMVGKGFSA 428



 Score = 44.7 bits (104), Expect = 0.093,   Method: Compositional matrix adjust.
 Identities = 72/345 (20%), Positives = 135/345 (39%), Gaps = 22/345 (6%)

Query: 14  FQSWMREGFP---VHRGEIFHSINRLRKLQLNKRALEVMEWVIRERPYRPKELDYSYLLE 70
           F   ++EG P        I H    L ++     A  + + ++ ER   P ++ ++ L++
Sbjct: 103 FSEMVKEGIPPDVFTYSSILHGFCNLGRVN---EATSLFKQMV-ERNVIPNKVTFTILID 158

Query: 71  FTIKNHGISQGEKLFCCI------PKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMRVL 124
              K   IS+   +F  +      P  Y     YN LV     +  +  + +    M   
Sbjct: 159 GLCKKRMISEAWLVFETMTEKGLEPDVYT----YNALVDGYCSRSQMDEAQKLFNIMDRK 214

Query: 125 GHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGL 184
           G + +   +N LI  +   GR      +L +M    + P + T+  LM+        +  
Sbjct: 215 GCAPNVRSYNILINGHCKSGRIDEAKGLLAEMSHKSLTPDIFTYSTLMRGFCQVGRPQEA 274

Query: 185 MKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLI-- 242
            ++  +M    + PN ++Y I+            A   ++A+++S    N     +LI  
Sbjct: 275 QELLKEMCSYGLLPNLITYSIVLDGLCKHGHLDEAFELLKAMQESKIEPNIFIYTILIEG 334

Query: 243 -ILYGYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQL 301
              +G L   ++L          P V +  Y + I    +    + A EL+ EM     L
Sbjct: 335 MCTFGKLEAARELFSNLFVKGIQPTVVT--YTVMISGLLKGGLSNEACELFREMAVNGCL 392

Query: 302 KATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLA 346
             +  YN +I  + +NG    A  L++EM   G   ++ T+R L+
Sbjct: 393 PNSCTYNVIIQGFLRNGDTPNAVRLIEEMVGKGFSADSSTFRMLS 437


>gi|357122970|ref|XP_003563186.1| PREDICTED: pentatricopeptide repeat-containing protein At5g42310,
           mitochondrial-like [Brachypodium distachyon]
          Length = 675

 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 84/416 (20%), Positives = 172/416 (41%), Gaps = 59/416 (14%)

Query: 59  RPKELDYSYLLEFTIKNHGISQGEKLF-----CCIPKDYQNELLYNNLVIACLDKGVIKL 113
           +P+   Y+ LL+  +K   +   E++      C +  D   E  Y+ LV A    G  + 
Sbjct: 303 KPRTRAYNALLKGYVKIGSLKNAEQVLDEMSDCGVAPD---EATYSLLVDAYTRAGRWES 359

Query: 114 SLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMK 173
           +   +K+M   G   S  VF+R++      G  +    +LR+M A  V P    +++++ 
Sbjct: 360 ARILLKEMEADGVKPSSYVFSRILAGFRDRGDWQKAFAVLREMHASGVQPDRHFYNVMID 419

Query: 174 IEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGN 233
                + +   M  ++ M+   +EP+ V++  L  AH     +  A    E + +S    
Sbjct: 420 TFGKYNCLGHAMDAFNRMREEGIEPDVVTWNTLIDAHRKGGRHDRAMELFEEMRESNCPP 479

Query: 234 NWSTLDVLIILYGYLAKGKDLERIWATVQE---LPNVRSKSYVLAIEAFGRIAQVSRAEE 290
             +T +++I L G   +   +E + + ++E   +PN+   +Y   ++ +GR  +   A E
Sbjct: 480 GTTTYNIMINLLGEQERWVGVETMLSEMKEQGLVPNI--ITYTTLVDVYGRSGRFKEAIE 537

Query: 291 LWLEMQSVKQLKATE-QYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGC 349
             +E+     LK +   Y+++++ Y + G  D A  ++K M  +G + + +         
Sbjct: 538 C-IEVMKADGLKPSPTMYHALVNAYAQRGLADHALNVVKAMRADGLEASTVVLN------ 590

Query: 350 FKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKK 409
                                               S++  F E   V  A ++ + +K+
Sbjct: 591 ------------------------------------SLMNAFGEDRRVVEAFSVLQFMKE 614

Query: 410 ANYTKYTFVYNTLIKAYVKAKIND--PNLLRRMILGGARPDAETYSLLKLAEQFQK 463
            +       Y TL+KA ++ +  D  P +   MI  G  PD +  ++L+ A ++ K
Sbjct: 615 NDLRPDVITYTTLMKALIRIEQFDKVPVIYEEMITSGCAPDRKARAMLRSALRYMK 670



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 55/276 (19%), Positives = 114/276 (41%), Gaps = 11/276 (3%)

Query: 184 LMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLII 243
           L ++  D++ S +EP+   +  L +A A A L   A   + + +        + +  LI 
Sbjct: 219 LERLLGDLRESRLEPDAPLFSDLISAFARAALPDAALDLLASAQAIGLTPRSNAVTALIS 278

Query: 244 LYGYLAKGKDLERIWATVQELPNV--RSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQL 301
             G   +  + E ++        +  R+++Y   ++ + +I  +  AE++  EM      
Sbjct: 279 ALGGAGRVAEAEALFLEFFLAGEIKPRTRAYNALLKGYVKIGSLKNAEQVLDEMSDCGVA 338

Query: 302 KATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKA 361
                Y+ ++  Y + G  + A  LLKEM  +G KP++  +  +  G       ++ F  
Sbjct: 339 PDEATYSLLVDAYTRAGRWESARILLKEMEADGVKPSSYVFSRILAGFRDRGDWQKAFAV 398

Query: 362 LELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNT 421
           L    + +    V+    +      +I+ F +   +G+A + F  +++         +NT
Sbjct: 399 L----REMHASGVQPDRHFYNV---MIDTFGKYNCLGHAMDAFNRMREEGIEPDVVTWNT 451

Query: 422 LIKAYVKAKINDP--NLLRRMILGGARPDAETYSLL 455
           LI A+ K   +D    L   M      P   TY+++
Sbjct: 452 LIDAHRKGGRHDRAMELFEEMRESNCPPGTTTYNIM 487


>gi|297837161|ref|XP_002886462.1| binding protein [Arabidopsis lyrata subsp. lyrata]
 gi|297332303|gb|EFH62721.1| binding protein [Arabidopsis lyrata subsp. lyrata]
          Length = 550

 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 87/398 (21%), Positives = 164/398 (41%), Gaps = 53/398 (13%)

Query: 32  SINRLRKLQLNKRALEVMEWVIRERPYRPKELDYSYLLEFTIK----NHGISQGEKLFCC 87
           S  RLR ++L+  A+ +   +++ RP+ P  +D++ LL   +K    +  IS G+K+   
Sbjct: 57  SKTRLRDIKLHD-AINLFREMVKTRPF-PSIVDFNRLLSAIVKMKKYDVVISLGKKMEVL 114

Query: 88  IPKDYQNELLYNNLVIACLDKGV-IKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRR 146
                +N+L   N+VI C      + L+L  + KM  LG+    +    L+       R 
Sbjct: 115 ---GIRNDLYTFNIVINCFCCCFQVSLALSVLGKMLKLGYEPDRVTIGSLVNGFCRRNRV 171

Query: 147 KTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCIL 206
               +++ +M      P +  ++ ++        +   +  + ++ R  + PN V+Y  L
Sbjct: 172 SDAVSLVDKMVEIGYRPDIVAYNAIIDSLCKTRRVNDALDFFKEIGRKGIRPNVVTYTAL 231

Query: 207 ATAHA-VARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELP 265
                   R    A    + +++ +T                                 P
Sbjct: 232 VNGLCNSGRWNDAARLLRDMIKRKIT---------------------------------P 258

Query: 266 NVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASG 325
           NV + S +L  +AF +  +V  A+E++ EM  +        Y+S+I+  C +  ID+A+ 
Sbjct: 259 NVITYSALL--DAFVKNGKVLEAKEIFEEMVRMSIDPDIVTYSSLINGLCLHDRIDEANQ 316

Query: 326 LLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTL 385
           +   M   GC P+ ++Y  L  G  K+  VE+G       MKL      R       T  
Sbjct: 317 MFDLMVSKGCFPDVVSYNTLINGFCKAKRVEDG-------MKLFRKMSQRGLVNNTVTYN 369

Query: 386 SIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLI 423
           ++I+ F + GDV  A+  F ++     +   + YN L+
Sbjct: 370 TLIQGFFQVGDVDKAQEFFSQMDSFGVSPDIWTYNILL 407



 Score = 60.8 bits (146), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 47/182 (25%), Positives = 82/182 (45%), Gaps = 9/182 (4%)

Query: 276 IEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGC 335
           +  F R  +VS A  L  +M  +        YN++I   CK   ++ A    KE+   G 
Sbjct: 162 VNGFCRRNRVSDAVSLVDKMVEIGYRPDIVAYNAIIDSLCKTRRVNDALDFFKEIGRKGI 221

Query: 336 KPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKG 395
           +PN +TY  L  G   S    +  + L   +K       R  TP + T  ++++ F + G
Sbjct: 222 RPNVVTYTALVNGLCNSGRWNDAARLLRDMIK-------RKITPNVITYSALLDAFVKNG 274

Query: 396 DVGNAENLFEELKKANYTKYTFVYNTLIKAY-VKAKINDPN-LLRRMILGGARPDAETYS 453
            V  A+ +FEE+ + +       Y++LI    +  +I++ N +   M+  G  PD  +Y+
Sbjct: 275 KVLEAKEIFEEMVRMSIDPDIVTYSSLINGLCLHDRIDEANQMFDLMVSKGCFPDVVSYN 334

Query: 454 LL 455
            L
Sbjct: 335 TL 336



 Score = 59.3 bits (142), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 58/318 (18%), Positives = 135/318 (42%), Gaps = 8/318 (2%)

Query: 98  YNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMK 157
           YN ++ +      +  +L++ K++   G   + + +  L+    + GR      +LR M 
Sbjct: 193 YNAIIDSLCKTRRVNDALDFFKEIGRKGIRPNVVTYTALVNGLCNSGRWNDAARLLRDMI 252

Query: 158 ADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYT 217
             K+ P+V T+  L+     +  +    +++ +M R  ++P+ V+Y  L     +     
Sbjct: 253 KRKITPNVITYSALLDAFVKNGKVLEAKEIFEEMVRMSIDPDIVTYSSLINGLCLHDRID 312

Query: 218 VAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSK-SYVLAI 276
            A    + +       +  + + LI  +    + +D  +++  + +   V +  +Y   I
Sbjct: 313 EANQMFDLMVSKGCFPDVVSYNTLINGFCKAKRVEDGMKLFRKMSQRGLVNNTVTYNTLI 372

Query: 277 EAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCK 336
           + F ++  V +A+E + +M S         YN ++   C NG ++KA  + ++M  +   
Sbjct: 373 QGFFQVGDVDKAQEFFSQMDSFGVSPDIWTYNILLGGLCDNGLLEKALVIFEDMQKSEMD 432

Query: 337 PNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGD 396
            + +TY  +  G  K+  VE+ +        L  +  ++   P + T  +++     KG 
Sbjct: 433 LDIVTYTTVIQGMCKTGKVEDAW-------GLFCSLSLKGLKPDIVTYTTMMSGLCTKGL 485

Query: 397 VGNAENLFEELKKANYTK 414
               E L+ ++K+    K
Sbjct: 486 QHEVEALYTKMKQEGLMK 503


>gi|242056139|ref|XP_002457215.1| hypothetical protein SORBIDRAFT_03g003430 [Sorghum bicolor]
 gi|241929190|gb|EES02335.1| hypothetical protein SORBIDRAFT_03g003430 [Sorghum bicolor]
          Length = 573

 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 97/374 (25%), Positives = 164/374 (43%), Gaps = 37/374 (9%)

Query: 100 NLVIACLDK-GVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNI---LRQ 155
           N+VI+ L K G ++ + +  K MR  G   S + +N LI      GR   + ++   L++
Sbjct: 192 NIVISGLCKTGQLRKAGDVAKDMRGWGLMPSVVTYNTLIDGYYKWGRAGKMYHVDMLLKE 251

Query: 156 MKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARL 215
           M    ++P+V TF++L+     + NI   +KV+ +M++  +  N V+Y  L +       
Sbjct: 252 MNQAGISPNVVTFNVLINGYCKESNITAAIKVFEEMRQHGIPANMVTYTSLVSGLCREGK 311

Query: 216 YTVAETYVEALEKSMTGNNWSTLDVL-IILYGYLAKGKDLE-RIW----ATVQELPNVRS 269
              +   VE +E+       +TL  L  +L G+  KG  +E   W    A     PNV  
Sbjct: 312 VEDSMKLVEEMEEL----GLATLPTLNSVLNGFCKKGMMVEAEGWVDGMAQKGMKPNV-- 365

Query: 270 KSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKE 329
            +Y   I+ + R+ ++  A      M         + YN +I+ +  +      SGLL E
Sbjct: 366 VTYNTLIDGYQRLGKMKEATAAKGAMAGKGISPDVKTYNCLITGFTTSTDWRSVSGLLDE 425

Query: 330 MSMNGCKPNAITYRHL--ALGCFKSNLVEEGFKAL----ELGMKLITTKKVRSSTPWLET 383
           M   G K + +TY  L  AL C     V +  K L    E+G++           P   T
Sbjct: 426 MKETGVKADLVTYNVLIGALCC--KGEVRKAVKLLDEMVEVGLE-----------PKHRT 472

Query: 384 TLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVK-AKINDPN-LLRRMI 441
             +II  F EKGD   A ++   ++K          N  +K + K  K+++ N +L  M+
Sbjct: 473 YNAIINGFCEKGDAKGAHDIRIRMEKCKKRANVVTCNVFLKYFCKMGKMDEANVVLNEML 532

Query: 442 LGGARPDAETYSLL 455
             G  P+  TY ++
Sbjct: 533 EKGLVPNRITYEII 546



 Score = 47.4 bits (111), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 61/309 (19%), Positives = 125/309 (40%), Gaps = 21/309 (6%)

Query: 60  PKELDYSYLLEFTIKNHGISQGEKLF-----CCIPKDYQNELLYNNLVIACLDKGVIKLS 114
           P  + ++ L+    K   I+   K+F       IP    N + Y +LV     +G ++ S
Sbjct: 259 PNVVTFNVLINGYCKESNITAAIKVFEEMRQHGIP---ANMVTYTSLVSGLCREGKVEDS 315

Query: 115 LEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKI 174
           ++ +++M  LG + +    N ++      G        +  M    + P+V T++ L+  
Sbjct: 316 MKLVEEMEELGLA-TLPTLNSVLNGFCKKGMMVEAEGWVDGMAQKGMKPNVVTYNTLIDG 374

Query: 175 EANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNN 234
                 ++        M    + P+  +Y  L T    +  +      ++ ++++    +
Sbjct: 375 YQRLGKMKEATAAKGAMAGKGISPDVKTYNCLITGFTTSTDWRSVSGLLDEMKETGVKAD 434

Query: 235 WSTLDVLIILYGYLAKGKDLERIWATVQELPNV----RSKSYVLAIEAFGRIAQVSRAEE 290
             T +VLI   G L    ++ +    + E+  V    + ++Y   I  F        A +
Sbjct: 435 LVTYNVLI---GALCCKGEVRKAVKLLDEMVEVGLEPKHRTYNAIINGFCEKGDAKGAHD 491

Query: 291 LWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCF 350
           + + M+  K+       N  +  +CK G +D+A+ +L EM   G  PN ITY        
Sbjct: 492 IRIRMEKCKKRANVVTCNVFLKYFCKMGKMDEANVVLNEMLEKGLVPNRITYE-----II 546

Query: 351 KSNLVEEGF 359
            S ++E+G+
Sbjct: 547 NSGMIEKGY 555


>gi|115472657|ref|NP_001059927.1| Os07g0548300 [Oryza sativa Japonica Group]
 gi|28564790|dbj|BAC57720.1| putative crp1 protein [Oryza sativa Japonica Group]
 gi|113611463|dbj|BAF21841.1| Os07g0548300 [Oryza sativa Japonica Group]
          Length = 661

 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 80/415 (19%), Positives = 169/415 (40%), Gaps = 57/415 (13%)

Query: 59  RPKELDYSYLLEFTIKNHGISQGEKLF-----CCIPKDYQNELLYNNLVIACLDKGVIKL 113
           +P+   Y+ LL+  +K   +   E++      C +  D   E  Y+ LV A    G  + 
Sbjct: 289 KPRTRAYNALLKGYVKIGSLKNAEQVLDEMSQCGVAPD---EATYSLLVDAYTRAGRWES 345

Query: 114 SLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMK 173
           +   +K+M   G   S  VF+R++      G  +    +LR+M A  V P    +++++ 
Sbjct: 346 ARILLKEMEADGVKPSSYVFSRILAGFRDRGEWQKAFAVLREMHASGVRPDRHFYNVMID 405

Query: 174 IEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGN 233
                + +   M  +  M+   +EP+ V++  L  AH     +  A    + + +S    
Sbjct: 406 TFGKYNCLGHAMDAFDRMREEGIEPDVVTWNTLIDAHCKGGRHDRAIELFDEMRESNCPL 465

Query: 234 NWSTLDVLIILYGYLAKGKDLERIWATVQE---LPNVRSKSYVLAIEAFGRIAQVSRAEE 290
             +T +++I L G   + + +E + A ++E   +PN+   +Y   ++ +GR  +   A +
Sbjct: 466 GTTTYNIMINLLGEEQRWEGVEAMLAEMKEQGLVPNI--ITYTTLVDVYGRSGRFKEAVD 523

Query: 291 LWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCF 350
               M++     +   Y+++++ Y + G  D A  ++K M  +G + + +          
Sbjct: 524 CIEAMKADGLKPSPTMYHALVNAYAQRGLADHALNVVKAMRADGLEASTVVLN------- 576

Query: 351 KSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKA 410
                                              S+I  F E   +  A ++ + +K+ 
Sbjct: 577 -----------------------------------SLINAFGEDRRIAEAFSVLQFMKEN 601

Query: 411 NYTKYTFVYNTLIKAYVKAKIND--PNLLRRMILGGARPDAETYSLLKLAEQFQK 463
                   Y TL+KA ++ +  +  P +   MI  G  PD +  ++L+ A ++ K
Sbjct: 602 GLRPDVITYTTLMKALIRVEQFEKVPVIYEEMITSGCAPDRKARAMLRSALRYMK 656



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 80/395 (20%), Positives = 164/395 (41%), Gaps = 26/395 (6%)

Query: 52  VIRERPYRPKELDYSYLLEFTIKNHGISQGEKLFCCIPKDYQNEL-----LYNNLVIACL 106
           ++RE  + P    YS+LL   +          L   +    ++ L     L+++L+ A  
Sbjct: 173 LLREHSFLPDLASYSHLLASLLNTRDPPDAALLDRLLGDLRESRLEPDAPLFSDLISAFA 232

Query: 107 DKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPN----ILRQMKADKVA 162
              +   +LE +   + +G +      N +  L SS G  + +       L    A ++ 
Sbjct: 233 RARLPDAALELLASAQAIGLTPRS---NAVTALISSLGSARRVAEAEALFLEFFLAGEIK 289

Query: 163 PHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETY 222
           P    ++ L+K      +++   +V  +M +  V P+E +Y +L  A+  A  +  A   
Sbjct: 290 PRTRAYNALLKGYVKIGSLKNAEQVLDEMSQCGVAPDEATYSLLVDAYTRAGRWESARIL 349

Query: 223 VEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQEL--PNVRSKS--YVLAIEA 278
           ++ +E    G   S+     IL G+  +G + ++ +A ++E+    VR     Y + I+ 
Sbjct: 350 LKEMEAD--GVKPSSYVFSRILAGFRDRG-EWQKAFAVLREMHASGVRPDRHFYNVMIDT 406

Query: 279 FGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPN 338
           FG+   +  A + +  M+          +N++I  +CK G  D+A  L  EM  + C   
Sbjct: 407 FGKYNCLGHAMDAFDRMREEGIEPDVVTWNTLIDAHCKGGRHDRAIELFDEMRESNCPLG 466

Query: 339 AITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVG 398
             TY ++ +         EG +A      ++   K +   P + T  ++++++   G   
Sbjct: 467 TTTY-NIMINLLGEEQRWEGVEA------MLAEMKEQGLVPNIITYTTLVDVYGRSGRFK 519

Query: 399 NAENLFEELKKANYTKYTFVYNTLIKAYVKAKIND 433
            A +  E +K         +Y+ L+ AY +  + D
Sbjct: 520 EAVDCIEAMKADGLKPSPTMYHALVNAYAQRGLAD 554


>gi|224136310|ref|XP_002326829.1| predicted protein [Populus trichocarpa]
 gi|222835144|gb|EEE73579.1| predicted protein [Populus trichocarpa]
          Length = 664

 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 100/475 (21%), Positives = 188/475 (39%), Gaps = 32/475 (6%)

Query: 1   IERLPRGEPVGSAFQSWMREGFPVHRGEIFHSINRLRKLQLNKRALEVMEWVIRERPYRP 60
           + RL   +P  +  +S +    P      F  +  LR +    +A E   W  R   +  
Sbjct: 1   MARLINSKPWSTELESSLFSLSPSISKTTFFQV--LRFIASPPKAFEFFNWASRN-GFAH 57

Query: 61  KELDYSYLLEFTIKNHGISQGEKLFCCIPKDYQNEL-----LYNNLVIACLDKGVIKLSL 115
               Y  +L+   +N  ++        I +     +       N L+ +  + G+   ++
Sbjct: 58  DSRSYFMMLDILGRNGNLNIARNFLFSIERRSNGSVKIEDRFCNTLLRSYGNAGLFNEAI 117

Query: 116 EYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKAD-KVAPHVSTFHILMKI 174
           +    M+  G S S + FN L+++    GR     ++  +M     V P   TF+IL++ 
Sbjct: 118 KLFSLMKSSGVSPSVITFNSLLLILLKRGRTNMAHSVFDEMCGTYGVTPDTYTFNILIRG 177

Query: 175 EANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNN 234
              +  ++   + + +M R   EP+ V+Y  L      A    +A   V+ + K M   +
Sbjct: 178 FCKNSMVDEGFRFFKEMSRFNCEPDVVTYNTLVDGLCRAGKVRIAHNVVKGMVKKMKDLS 237

Query: 235 WSTLDVLIILYGYLAKGKDLERIWATVQEL------PNVRSKSYVLAIEAFGRIAQVSRA 288
              +    ++ GY  K ++++      +E+      PN    +Y   I+    + +  + 
Sbjct: 238 PDVVTYTTLVRGYCMK-QEIDEALVVFEEMVSRGLKPN--DITYNTLIKGLCEVQKFDKI 294

Query: 289 EE-LWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLAL 347
           +E L   +     +  T  YN++++  C  G  D+A  + K+M     +P++ TY  L  
Sbjct: 295 KEILGGAVGGRGFVPDTCTYNTLMNAQCDAGNFDEALKMFKKMKELKVQPDSATYSVLI- 353

Query: 348 GCFKSNLVEEG-FKALELGMKLITTKKV----RSSTPWLETTLSIIEIFAEKGDVGNAEN 402
                NL + G F+  E     ++ + +       TP +     I +   + G    AE 
Sbjct: 354 ----RNLCQRGDFERAEQLFDKLSDEDILLRDDGCTPLVAAYNPIFDFLCKNGKTHKAER 409

Query: 403 LFEELKKANYTKYTFVYNTLIKAYVKAKINDPN--LLRRMILGGARPDAETYSLL 455
           +F +L K   T+    Y TLI  + K    +    LL  M+     PD ETY LL
Sbjct: 410 VFRQLMKKG-TQDPPSYKTLIIGHCKEGTFEAGYKLLLFMLRRDYVPDFETYVLL 463



 Score = 62.4 bits (150), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 69/344 (20%), Positives = 144/344 (41%), Gaps = 23/344 (6%)

Query: 98  YNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQM- 156
           +N L+       ++     + K+M         + +N L+      G+ +   N+++ M 
Sbjct: 171 FNILIRGFCKNSMVDEGFRFFKEMSRFNCEPDVVTYNTLVDGLCRAGKVRIAHNVVKGMV 230

Query: 157 -KADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHA-VAR 214
            K   ++P V T+  L++       I+  + V+ +M    ++PN+++Y  L      V +
Sbjct: 231 KKMKDLSPDVVTYTTLVRGYCMKQEIDEALVVFEEMVSRGLKPNDITYNTLIKGLCEVQK 290

Query: 215 LYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQEL---PNVRSKS 271
              + E    A+       +  T + L+          +  +++  ++EL   P+  S +
Sbjct: 291 FDKIKEILGGAVGGRGFVPDTCTYNTLMNAQCDAGNFDEALKMFKKMKELKVQPD--SAT 348

Query: 272 YVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATE-------QYNSVISVYCKNGFIDKAS 324
           Y + I    +     RAE+L+ ++     L   +        YN +    CKNG   KA 
Sbjct: 349 YSVLIRNLCQRGDFERAEQLFDKLSDEDILLRDDGCTPLVAAYNPIFDFLCKNGKTHKAE 408

Query: 325 GLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETT 384
            + +++   G + +  +Y+ L +G  K    E G+K L   ++       R   P  ET 
Sbjct: 409 RVFRQLMKKGTQ-DPPSYKTLIIGHCKEGTFEAGYKLLLFMLR-------RDYVPDFETY 460

Query: 385 LSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVK 428
           + +I  F +KG+   A    E + K++Y   T V+++++   +K
Sbjct: 461 VLLINGFLQKGEPILAYKTLERMLKSSYLPKTSVFHSILSELLK 504



 Score = 62.0 bits (149), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 47/162 (29%), Positives = 76/162 (46%), Gaps = 14/162 (8%)

Query: 304 TEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALE 363
           T  +N +I  +CKN  +D+     KEMS   C+P+ +TY  L  G  ++  V      ++
Sbjct: 168 TYTFNILIRGFCKNSMVDEGFRFFKEMSRFNCEPDVVTYNTLVDGLCRAGKVRIAHNVVK 227

Query: 364 LGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLI 423
            GM     KK++  +P + T  +++  +  K ++  A  +FEE+           YNTLI
Sbjct: 228 -GM----VKKMKDLSPDVVTYTTLVRGYCMKQEIDEALVVFEEMVSRGLKPNDITYNTLI 282

Query: 424 KAYVKAKINDPNLLRRMILGGA------RPDAETYSLLKLAE 459
           K   + +  D     + ILGGA       PD  TY+ L  A+
Sbjct: 283 KGLCEVQKFDK---IKEILGGAVGGRGFVPDTCTYNTLMNAQ 321


>gi|297829236|ref|XP_002882500.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297328340|gb|EFH58759.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 871

 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 88/397 (22%), Positives = 164/397 (41%), Gaps = 51/397 (12%)

Query: 100 NLVIACLDK-GVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKA 158
           N ++ CL K G +  +L   ++M+    + +   +N LI +    G+      +   M+ 
Sbjct: 347 NCILTCLRKMGKVDEALRVFEEMKK-DAAPNLSTYNILIDMLCRAGKLDCAFELRDSMQK 405

Query: 159 DKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHA-VARLYT 217
             + P+V T +I++        ++    ++  M      P+E+++C L      V R+  
Sbjct: 406 AGLFPNVRTVNIMVDRLCKSQKLDEACAIFEQMDYKVCTPDEITFCSLIDGLGKVGRVDD 465

Query: 218 VAETYVEALE------------------------------KSMTGNNWS-TLDVLIILYG 246
             + Y + L+                              K M   N S  L +L     
Sbjct: 466 AYKIYEKMLDSDCRTNSIVYTSLIKNFFNHGRKEDGHKIYKDMVNQNCSPDLQLLNTYMD 525

Query: 247 YLAKGKDLERIWATVQELPNVR----SKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLK 302
            + K  + E+  A  +E+ + R    ++SY + I    +    +   EL+  M+    + 
Sbjct: 526 CMFKAGEPEKGRAMFEEIKSRRFVPDARSYSILIHGLIKAGFANETYELFYSMKEQGCVL 585

Query: 303 ATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKAL 362
            T  YN VI  +CK G ++KA  LL+EM   G +P  +TY  +  G  K + ++E +   
Sbjct: 586 DTRAYNIVIDGFCKCGKVNKAYQLLEEMKTKGFEPTVVTYGSVIDGLAKIDRLDEAYMLF 645

Query: 363 ELGMKLITTKKVRSSTPWLETTL--SIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYN 420
           E         + +S    L   +  S+I+ F + G +  A  + EEL +   T   + +N
Sbjct: 646 E---------EAKSKRIELNVVIYSSLIDGFGKVGRIDEAYLILEELMQKGLTPNVYTWN 696

Query: 421 TLIKAYVKA-KINDPNL-LRRMILGGARPDAETYSLL 455
           +L+ A VKA +IN+  +  + M      P+  TY +L
Sbjct: 697 SLLDALVKAEEINEALVCFQSMKELKCTPNQVTYGIL 733



 Score = 61.2 bits (147), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 73/342 (21%), Positives = 145/342 (42%), Gaps = 17/342 (4%)

Query: 113 LSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILM 172
           + L   ++M+ LG+  +  +F  LI   +  GR  +  ++L +MK+  +   +  +++ +
Sbjct: 186 MMLTLFQQMQELGYEPTVHLFTTLIRGFAKEGRVDSALSLLDEMKSSSLDADIVLYNVCI 245

Query: 173 KIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTG 232
                   ++   K + +++ + ++P+EV+Y  +      A     A    E LEK+   
Sbjct: 246 DSFGKVGKVDMAWKFFHEIEANGLKPDEVTYTSMIGVLCKANRLDEAVEMFEHLEKNRRV 305

Query: 233 NNWSTLDVLIILYGYLAKGKD----LERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRA 288
                 + +I+ YG   K  +    LER  A    +P+V + + +L      ++ +V  A
Sbjct: 306 PCTYAYNTMIMGYGSAGKFDEAYSLLERQRAK-GSIPSVIAYNCILT--CLRKMGKVDEA 362

Query: 289 EELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALG 348
             ++ EM+          YN +I + C+ G +D A  L   M   G  PN  T   +   
Sbjct: 363 LRVFEEMKK-DAAPNLSTYNILIDMLCRAGKLDCAFELRDSMQKAGLFPNVRTVNIMVDR 421

Query: 349 CFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELK 408
             KS  ++E     E           +  TP   T  S+I+   + G V +A  ++E++ 
Sbjct: 422 LCKSQKLDEACAIFE-------QMDYKVCTPDEITFCSLIDGLGKVGRVDDAYKIYEKML 474

Query: 409 KANYTKYTFVYNTLIKAYVKA--KINDPNLLRRMILGGARPD 448
            ++    + VY +LIK +     K +   + + M+     PD
Sbjct: 475 DSDCRTNSIVYTSLIKNFFNHGRKEDGHKIYKDMVNQNCSPD 516



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 85/442 (19%), Positives = 164/442 (37%), Gaps = 76/442 (17%)

Query: 33  INRLRKLQLNKRALEVMEWVIR--ERPYRPKELDYSYLLEFTIKN-HGISQ--------- 80
           I  LR+L+   RA+E   W  R  E P+ P+  +   L+    +N   + Q         
Sbjct: 69  IGVLRRLKDVNRAIEYFRWYERRTELPHCPESYNSLLLVMARCRNFDALDQILGEMSVAG 128

Query: 81  -GEKLFCCIPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIIL 139
            G  +  CI            +V++C+    ++   + ++ MR      ++  +  LI  
Sbjct: 129 FGPSVNTCI-----------EMVLSCVKANKLREGFDVVQNMRKFKFRPAFSAYTTLIGA 177

Query: 140 NSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPN 199
            S+      +  + +QM+     P V  F  L++  A +  ++  + +  +MK S ++ +
Sbjct: 178 FSAVNHSDMMLTLFQQMQELGYEPTVHLFTTLIRGFAKEGRVDSALSLLDEMKSSSLDAD 237

Query: 200 EVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWA 259
            V Y                                   +V I  +G + K   ++  W 
Sbjct: 238 IVLY-----------------------------------NVCIDSFGKVGK---VDMAWK 259

Query: 260 TVQELPNVRSK----SYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYC 315
              E+     K    +Y   I    +  ++  A E++  ++  +++  T  YN++I  Y 
Sbjct: 260 FFHEIEANGLKPDEVTYTSMIGVLCKANRLDEAVEMFEHLEKNRRVPCTYAYNTMIMGYG 319

Query: 316 KNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVR 375
             G  D+A  LL+     G  P+ I Y  +     K   V+E  +  E  MK       +
Sbjct: 320 SAGKFDEAYSLLERQRAKGSIPSVIAYNCILTCLRKMGKVDEALRVFE-EMK-------K 371

Query: 376 SSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKINDP- 434
            + P L T   +I++    G +  A  L + ++KA         N ++    K++  D  
Sbjct: 372 DAAPNLSTYNILIDMLCRAGKLDCAFELRDSMQKAGLFPNVRTVNIMVDRLCKSQKLDEA 431

Query: 435 -NLLRRMILGGARPDAETYSLL 455
             +  +M      PD  T+  L
Sbjct: 432 CAIFEQMDYKVCTPDEITFCSL 453



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 76/374 (20%), Positives = 145/374 (38%), Gaps = 45/374 (12%)

Query: 87  CIPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRR 146
           C P    +E+ + +L+      G +  + +  +KM       + +V+  LI    + GR+
Sbjct: 443 CTP----DEITFCSLIDGLGKVGRVDDAYKIYEKMLDSDCRTNSIVYTSLIKNFFNHGRK 498

Query: 147 KTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCIL 206
           +    I + M     +P +   +  M         E    ++ ++K     P+  SY IL
Sbjct: 499 EDGHKIYKDMVNQNCSPDLQLLNTYMDCMFKAGEPEKGRAMFEEIKSRRFVPDARSYSIL 558

Query: 207 ATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPN 266
              H + +     ETY         G    T    I++ G+   GK    +    Q L  
Sbjct: 559 I--HGLIKAGFANETYELFYSMKEQGCVLDTRAYNIVIDGFCKCGK----VNKAYQLLEE 612

Query: 267 VRSKSYVLAIEAFGRI----AQVSRAEELWLEMQSVKQLKATEQ---YNSVISVYCKNGF 319
           +++K +   +  +G +    A++ R +E ++  +  K  +       Y+S+I  + K G 
Sbjct: 613 MKTKGFEPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKRIELNVVIYSSLIDGFGKVGR 672

Query: 320 IDKASGLLKEMSMNGCKPNAITYRHL------------ALGCFKS--------NLVEEGF 359
           ID+A  +L+E+   G  PN  T+  L            AL CF+S        N V  G 
Sbjct: 673 IDEAYLILEELMQKGLTPNVYTWNSLLDALVKAEEINEALVCFQSMKELKCTPNQVTYGI 732

Query: 360 ------KALELGMKLITTKKVRSS--TPWLETTLSIIEIFAEKGDVGNAENLFEELKKAN 411
                 K  +     +  ++++     P   +  ++I   A+ G++  A  LF+  K   
Sbjct: 733 LINGLCKVRKFNKAFVFWQEMQKQGMKPSTISYTTMISGLAKAGNIAEAGALFDRFKANG 792

Query: 412 YTKYTFVYNTLIKA 425
               +  YN +I+ 
Sbjct: 793 GVPDSACYNAMIEG 806



 Score = 39.7 bits (91), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 68/322 (21%), Positives = 116/322 (36%), Gaps = 61/322 (18%)

Query: 98  YNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMK 157
           Y+ L+   +  G    + E    M+  G  +    +N +I      G+      +L +MK
Sbjct: 555 YSILIHGLIKAGFANETYELFYSMKEQGCVLDTRAYNIVIDGFCKCGKVNKAYQLLEEMK 614

Query: 158 ADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYT 217
                P V T+  ++   A    ++    ++ + K   +E N V Y  L       ++  
Sbjct: 615 TKGFEPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKRIELNVVIYSSLI--DGFGKVGR 672

Query: 218 VAETYV---EALEKSMTGN--NW-STLDVLIILYGYLAKGKDLERIWATVQELPNVRSKS 271
           + E Y+   E ++K +T N   W S LD L+                             
Sbjct: 673 IDEAYLILEELMQKGLTPNVYTWNSLLDALV----------------------------- 703

Query: 272 YVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQ---YNSVISVYCKNGFIDKASGLLK 328
                       +     E  +  QS+K+LK T     Y  +I+  CK    +KA    +
Sbjct: 704 ------------KAEEINEALVCFQSMKELKCTPNQVTYGILINGLCKVRKFNKAFVFWQ 751

Query: 329 EMSMNGCKPNAITYRHLALGCFKS-NLVEEGFKALELGMKLITTKKVRSSTPWLETTLSI 387
           EM   G KP+ I+Y  +  G  K+ N+ E G         L    K     P      ++
Sbjct: 752 EMQKQGMKPSTISYTTMISGLAKAGNIAEAG--------ALFDRFKANGGVPDSACYNAM 803

Query: 388 IEIFAEKGDVGNAENLFEELKK 409
           IE  +      +A +LFEE ++
Sbjct: 804 IEGLSNGNRAMDAFSLFEETRR 825


>gi|326491875|dbj|BAJ98162.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 628

 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 82/370 (22%), Positives = 163/370 (44%), Gaps = 26/370 (7%)

Query: 98  YNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLV-FNRLIILNSSPGRRKTIPNILRQM 156
           YN+++I  + +G  +   E   +M   G      V ++ LI      GR+ +   +L +M
Sbjct: 193 YNSMIIMLMHEGEYEKVHELYNEMSNEGQCFPDTVTYSALISAFCKLGRQDSAIWLLNEM 252

Query: 157 KADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLY 216
           K + + P    + +LM +     N+ G + ++ +M+     P+  +Y  L      A   
Sbjct: 253 KDNGMQPTAKIYTMLMALLFKLDNVHGALGLFEEMRHQYCRPDVFTYTELIRGLGKAGRL 312

Query: 217 TVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIW---ATVQELPNVRSKSYV 273
             A  +   + +     +   ++ +I   G   +  D  +++    T++ +P+V + + +
Sbjct: 313 DEAYNFFHEMRREGCRPDTVLMNNMINFLGKAGRLDDAIKLFEEMETLRCIPSVVTYNTI 372

Query: 274 LA--IEAFGRIAQVSRAEELWLE-MQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEM 330
           +    E+  R++++S     W E M+      +   Y+ +I  +CK    +KA  LL+EM
Sbjct: 373 IKALFESKSRVSEISS----WFERMKGSGISPSPFTYSILIDGFCKTNRTEKAMMLLEEM 428

Query: 331 SMNGCKPNAITYRHL--ALGCFKS-NLVEEGFKALELGMKLITTKKVRSSTPWLETTLSI 387
              G  P    Y  L  ALG  K  +L  E F+ L+        +   SS+  +   +  
Sbjct: 429 DEKGFPPCPAAYCSLIDALGKAKRYDLANELFQELK--------ENCGSSSARVYAVM-- 478

Query: 388 IEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKINDPNL--LRRMILGGA 445
           I+   + G + +A +LF+E+ +   T   + YN L+    +A + D  L  +RRM   G 
Sbjct: 479 IKHLGKAGRLDDAVDLFDEMNRLGCTPNVYAYNALMSGLARAGMLDEALTTMRRMQDHGC 538

Query: 446 RPDAETYSLL 455
            PD  +Y+++
Sbjct: 539 IPDINSYNII 548



 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 69/321 (21%), Positives = 129/321 (40%), Gaps = 16/321 (4%)

Query: 53  IRERPYRPKELDYSYLLEFTIKNHGISQGEKLF------CCIPKDYQNELLYNNLVIACL 106
           +R +  RP    Y+ L+    K   + +    F       C P    + +L NN++    
Sbjct: 287 MRHQYCRPDVFTYTELIRGLGKAGRLDEAYNFFHEMRREGCRP----DTVLMNNMINFLG 342

Query: 107 DKGVIKLSLEYMKKMRVLGHSISYLVFNRLI-ILNSSPGRRKTIPNILRQMKADKVAPHV 165
             G +  +++  ++M  L    S + +N +I  L  S  R   I +   +MK   ++P  
Sbjct: 343 KAGRLDDAIKLFEEMETLRCIPSVVTYNTIIKALFESKSRVSEISSWFERMKGSGISPSP 402

Query: 166 STFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEA 225
            T+ IL+      +  E  M +  +M      P   +YC L  A   A+ Y +A    + 
Sbjct: 403 FTYSILIDGFCKTNRTEKAMMLLEEMDEKGFPPCPAAYCSLIDALGKAKRYDLANELFQE 462

Query: 226 LEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQEL---PNVRSKSYVLAIEAFGRI 282
           L+++   ++     V+I   G   +  D   ++  +  L   PNV   +Y   +    R 
Sbjct: 463 LKENCGSSSARVYAVMIKHLGKAGRLDDAVDLFDEMNRLGCTPNVY--AYNALMSGLARA 520

Query: 283 AQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITY 342
             +  A      MQ    +     YN +++   K G  D+A G+L  M  +  KP+A++Y
Sbjct: 521 GMLDEALTTMRRMQDHGCIPDINSYNIILNALAKTGGPDRAMGMLCNMKQSAIKPDAVSY 580

Query: 343 RHLALGCFKSNLVEEGFKALE 363
             +      + + EE  K ++
Sbjct: 581 NTVLGALSHAGMFEEAAKLMK 601



 Score = 56.2 bits (134), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 64/267 (23%), Positives = 115/267 (43%), Gaps = 18/267 (6%)

Query: 196 VEPNEVSYCILATAHAVARLYTVAETY-VEALEKSMTGNNWSTLDVLIILYGYLAKGKDL 254
           V P E+S  I    +A      VA  Y ++A +   T + ++++ ++++  G   K  +L
Sbjct: 153 VTPMELSDIIRMLGNAKMISKAVAIFYQIKARKCQPTAHAYNSMIIMLMHEGEYEKVHEL 212

Query: 255 -ERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISV 313
              +    Q  P+  + +Y   I AF ++ +   A  L  EM+        + Y  ++++
Sbjct: 213 YNEMSNEGQCFPD--TVTYSALISAFCKLGRQDSAIWLLNEMKDNGMQPTAKIYTMLMAL 270

Query: 314 YCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKK 373
             K   +  A GL +EM    C+P+  TY  L  G  K+  ++E +             +
Sbjct: 271 LFKLDNVHGALGLFEEMRHQYCRPDVFTYTELIRGLGKAGRLDEAYNFFH---------E 321

Query: 374 VRSSTPWLETTL--SIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKI 431
           +R      +T L  ++I    + G + +A  LFEE++          YNT+IKA  ++K 
Sbjct: 322 MRREGCRPDTVLMNNMINFLGKAGRLDDAIKLFEEMETLRCIPSVVTYNTIIKALFESKS 381

Query: 432 NDPNL---LRRMILGGARPDAETYSLL 455
               +     RM   G  P   TYS+L
Sbjct: 382 RVSEISSWFERMKGSGISPSPFTYSIL 408



 Score = 54.7 bits (130), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 79/408 (19%), Positives = 151/408 (37%), Gaps = 50/408 (12%)

Query: 53  IRERPYRPKELDYSYLLEFTIKNHGISQGEKLFCCIPKDY--QNELLYNNLVIACLDKGV 110
           +++   +P    Y+ L+    K   +     LF  +   Y   +   Y  L+      G 
Sbjct: 252 MKDNGMQPTAKIYTMLMALLFKLDNVHGALGLFEEMRHQYCRPDVFTYTELIRGLGKAGR 311

Query: 111 IKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHI 170
           +  +  +  +MR  G     ++ N +I      GR      +  +M+  +  P V T++ 
Sbjct: 312 LDEAYNFFHEMRREGCRPDTVLMNNMINFLGKAGRLDDAIKLFEEMETLRCIPSVVTYNT 371

Query: 171 LMK-IEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKS 229
           ++K +  +   +  +   +  MK S + P+  +Y IL            A   +E +++ 
Sbjct: 372 IIKALFESKSRVSEISSWFERMKGSGISPSPFTYSILIDGFCKTNRTEKAMMLLEEMDE- 430

Query: 230 MTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAE 289
                               KG             P   + +Y   I+A G+  +   A 
Sbjct: 431 --------------------KG------------FPPCPA-AYCSLIDALGKAKRYDLAN 457

Query: 290 ELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGC 349
           EL+ E++      +   Y  +I    K G +D A  L  EM+  GC PN   Y  L  G 
Sbjct: 458 ELFQELKENCGSSSARVYAVMIKHLGKAGRLDDAVDLFDEMNRLGCTPNVYAYNALMSGL 517

Query: 350 FKSNLVEEGFKALELGMKLITTKKVRS--STPWLETTLSIIEIFAEKGDVGNAENLFEEL 407
            ++ +++E          L T ++++     P + +   I+   A+ G    A  +   +
Sbjct: 518 ARAGMLDEA---------LTTMRRMQDHGCIPDINSYNIILNALAKTGGPDRAMGMLCNM 568

Query: 408 KKANYTKYTFVYNTLIKAYVKAKIND--PNLLRRMILGGARPDAETYS 453
           K++        YNT++ A   A + +    L++ M   G   D  TYS
Sbjct: 569 KQSAIKPDAVSYNTVLGALSHAGMFEEAAKLMKEMNAIGFDYDLITYS 616


>gi|255661192|gb|ACU25765.1| pentatricopeptide repeat-containing protein [Lampayo castellani]
          Length = 426

 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 74/322 (22%), Positives = 151/322 (46%), Gaps = 22/322 (6%)

Query: 98  YNNLVIACLDKGVIKLSLEYMKKM---RVLGHSISYLVFNRLIILNSSPGRRKTIPNILR 154
           Y+ L+     +G+   +L +++KM   RV G  + Y   + LI L+          +I  
Sbjct: 12  YSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLY---SNLIELSRKLCDYSKAISIFS 68

Query: 155 QMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVAR 214
           ++K    AP +  ++ ++ +            + ++M+ + V P+ VSY  L T H   +
Sbjct: 69  RLKRSGFAPDLVAYNSMINVFGKAKLFREARSLINEMRTAGVMPDTVSYTTLLTMHVENK 128

Query: 215 LYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQEL---PNVRSKS 271
            +  A +    + +     + +T +++I +YG L   K+ ++++  ++++   PNV S +
Sbjct: 129 RFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKIGIEPNVVSYN 188

Query: 272 YVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMS 331
            +L +  +G       A  L+  MQ     +    YNS++ +Y K    +KA+ L++EM 
Sbjct: 189 TLLRV--YGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQ 246

Query: 332 MNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTL--SIIE 389
             G +PN+ITY         S ++    K  +L    +  +K+R+S   ++  L  ++I 
Sbjct: 247 NRGIEPNSITY---------STIISIWGKVGKLDRAAMLFQKLRNSGVEIDQVLYQTMIV 297

Query: 390 IFAEKGDVGNAENLFEELKKAN 411
            +   G V +A+ L  ELK+ +
Sbjct: 298 AYERAGLVAHAKRLLHELKRPD 319



 Score = 40.8 bits (94), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 50/236 (21%), Positives = 94/236 (39%), Gaps = 41/236 (17%)

Query: 196 VEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLE 255
           + P+  +Y  L T      L+  A ++++ +E+     +       ++LY  L    +L 
Sbjct: 5   LSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGD-------LVLYSNLI---ELS 54

Query: 256 RIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYC 315
           R           +   Y  AI  F R+ +   A +L               YNS+I+V+ 
Sbjct: 55  R-----------KLCDYSKAISIFSRLKRSGFAPDLV-------------AYNSMINVFG 90

Query: 316 KNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVR 375
           K     +A  L+ EM   G  P+ ++Y  L        +  E  + LE        ++++
Sbjct: 91  KAKLFREARSLINEMRTAGVMPDTVSYTTLL------TMHVENKRFLEALSVFAEMREIK 144

Query: 376 SSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKI 431
                L T   +I+++ + G    A+ LF  ++K         YNTL++ Y  A++
Sbjct: 145 CLLD-LTTCNIMIDVYGQLGMAKEADKLFWGMRKIGIEPNVVSYNTLLRVYGDAEL 199


>gi|357159762|ref|XP_003578551.1| PREDICTED: pentatricopeptide repeat-containing protein At1g20300,
           mitochondrial-like [Brachypodium distachyon]
          Length = 534

 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 76/286 (26%), Positives = 124/286 (43%), Gaps = 24/286 (8%)

Query: 183 GLMKVYSDMKRSEVE-----PNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNN--W 235
           G+    SD+ RS  E     P+      L  A +  RL + A+   ++ +   T +   +
Sbjct: 183 GMSSEASDLFRSMEEYGGGVPDPAVLASLLGALSKKRLASEAQALFDSYKSVFTPDVVLY 242

Query: 236 STLDVLIILYGYLAKGKDLERIWATVQE---LPNVRSKSYVLAIEAFGRIAQVSRAEELW 292
           +TL       G L K    E+++A +Q+   +PNV +  Y   I+A  R  QV RA+EL 
Sbjct: 243 TTLVHAWCRSGCLDKA---EQVFAEMQQAGIMPNVYT--YTAVIDAMYRAGQVPRAQELL 297

Query: 293 LEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLA-LGCFK 351
            +M        T  +N+++  + K G  ++   +  +M   GC P+ ITY  L    C K
Sbjct: 298 CQMIDSGCPPNTATFNAIMRAHVKAGRSEQVLQVHNQMRQLGCDPDIITYNFLMETHCGK 357

Query: 352 SNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKAN 411
                 G   L+  MKL+     +  TP   T   ++++    G+V  A  L+E +++  
Sbjct: 358 ------GQSNLDAAMKLLLKMIAKGCTPDCHTFNPMLKLVVVLGNVDAAHKLYERMQELQ 411

Query: 412 YTKYTFVYNTLIKAYVKAKINDPNLL--RRMILGGARPDAETYSLL 455
                  YN L+K + K K  D  L   + M   G  P+  TY  L
Sbjct: 412 CKPNVITYNLLMKLFGKDKSMDMVLRIKKDMDAQGVEPNVNTYGAL 457



 Score = 48.9 bits (115), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 52/254 (20%), Positives = 106/254 (41%), Gaps = 10/254 (3%)

Query: 96  LLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQ 155
           +LY  LV A    G +  + +   +M+  G   +   +  +I      G+      +L Q
Sbjct: 240 VLYTTLVHAWCRSGCLDKAEQVFAEMQQAGIMPNVYTYTAVIDAMYRAGQVPRAQELLCQ 299

Query: 156 MKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAH---AV 212
           M      P+ +TF+ +M+        E +++V++ M++   +P+ ++Y  L   H     
Sbjct: 300 MIDSGCPPNTATFNAIMRAHVKAGRSEQVLQVHNQMRQLGCDPDIITYNFLMETHCGKGQ 359

Query: 213 ARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQEL---PNVRS 269
           + L    +  ++ + K  T  +  T + ++ L   L       +++  +QEL   PNV  
Sbjct: 360 SNLDAAMKLLLKMIAKGCT-PDCHTFNPMLKLVVVLGNVDAAHKLYERMQELQCKPNV-- 416

Query: 270 KSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKE 329
            +Y L ++ FG+   +     +  +M +         Y ++I  +C  G   +A   L+E
Sbjct: 417 ITYNLLMKLFGKDKSMDMVLRIKKDMDAQGVEPNVNTYGALIETFCGRGNWKRAYATLRE 476

Query: 330 M-SMNGCKPNAITY 342
           M  +   KP    Y
Sbjct: 477 MLEVKSLKPKKPVY 490



 Score = 42.4 bits (98), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 62/295 (21%), Positives = 122/295 (41%), Gaps = 30/295 (10%)

Query: 58  YRPKELDYSYLLEFTIKNHGISQGEKLFCCIPKD--YQNELLYNNLVIACLDKGVIKLSL 115
           + P  + Y+ L+    ++  + + E++F  + +     N   Y  ++ A    G +  + 
Sbjct: 235 FTPDVVLYTTLVHAWCRSGCLDKAEQVFAEMQQAGIMPNVYTYTAVIDAMYRAGQVPRAQ 294

Query: 116 EYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIE 175
           E + +M   G   +   FN ++  +   GR + +  +  QM+     P + T++ LM+  
Sbjct: 295 ELLCQMIDSGCPPNTATFNAIMRAHVKAGRSEQVLQVHNQMRQLGCDPDIITYNFLMETH 354

Query: 176 A--NDHNIEGLMKVYSDMKRSEVEPNEVSY-------CILATAHAVARLYTVAETYVEAL 226
                 N++  MK+   M      P+  ++        +L    A  +LY       E +
Sbjct: 355 CGKGQSNLDAAMKLLLKMIAKGCTPDCHTFNPMLKLVVVLGNVDAAHKLY-------ERM 407

Query: 227 EKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQEL------PNVRSKSYVLAIEAFG 280
           ++     N  T ++L+ L+G   K K ++ +    +++      PNV   +Y   IE F 
Sbjct: 408 QELQCKPNVITYNLLMKLFG---KDKSMDMVLRIKKDMDAQGVEPNV--NTYGALIETFC 462

Query: 281 RIAQVSRAEELWLEMQSVKQLKATEQ-YNSVISVYCKNGFIDKASGLLKEMSMNG 334
                 RA     EM  VK LK  +  Y+ V+ +  K G + K   L++ M+  G
Sbjct: 463 GRGNWKRAYATLREMLEVKSLKPKKPVYDMVLVLLRKAGQLRKHEELVELMADRG 517


>gi|255764587|gb|ACU33853.1| PPR1 protein [Capsicum annuum]
          Length = 577

 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 57/221 (25%), Positives = 105/221 (47%), Gaps = 18/221 (8%)

Query: 145 RRKTIPNILRQMKADK-VAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSY 203
           R + + N+LR    DK + P++ ++ IL+       N+   M+++ ++ +  ++P+ V+Y
Sbjct: 326 RARRVFNVLR----DKGIKPNIFSYSILINGYCKKKNLAKAMQLFGEISQKGLKPDTVTY 381

Query: 204 -CILATAHAVARLYTVAETYVEALEKSMTGNNW--STLDVLIILYGYLAKGKDLERIWAT 260
             IL     V R+    + + E L    T +    STL     L+GY   G  +E     
Sbjct: 382 STILHGLIEVGRIGDAKKIFDEMLRVGPTPDICLHSTL-----LFGYFKYGL-VEEAMLL 435

Query: 261 VQELPNVRSKS----YVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCK 316
             +L   R  +    Y + I    +  +V  A  ++ ++ S+  +     YN +I+ +C+
Sbjct: 436 FSKLERNREDTNISFYTVVINGLCKNDRVREAHAIFEKLPSIGLIPDVRTYNVMITGFCR 495

Query: 317 NGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEE 357
            G  D+  G+L++M  NGC  N ITY  +  G F+SN + E
Sbjct: 496 EGLFDEVKGILRKMEDNGCPANNITYNVIMQGFFRSNKISE 536



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 68/323 (21%), Positives = 139/323 (43%), Gaps = 20/323 (6%)

Query: 141 SSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNE 200
           S  G  +   ++LR M+     P V T+ I++     D N++  + + ++MK+  + PN 
Sbjct: 179 SKRGHTEKTLSLLRIMEQGNTKPDVRTYSIVIDALCKDINLDAAINLLNEMKQKNIPPNI 238

Query: 201 VSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWAT 260
            +Y  L         +   +T +  +       N  T  +LI       K +D + +   
Sbjct: 239 FTYNSLIDGLCKLGQWEKVKTLLSEMVNLNINPNVHTFSILIDGLCKEGKVEDADEVMRH 298

Query: 261 VQEL---PNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKN 317
           + E    P++ + S ++  + +    QV RA  ++  ++          Y+ +I+ YCK 
Sbjct: 299 MIEKGVEPDIITYSAIM--DGYCLRGQVDRARRVFNVLRDKGIKPNIFSYSILINGYCKK 356

Query: 318 GFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSS 377
             + KA  L  E+S  G KP+ +TY  +  G  +   + +  K  +  +++         
Sbjct: 357 KNLAKAMQLFGEISQKGLKPDTVTYSTILHGLIEVGRIGDAKKIFDEMLRV-------GP 409

Query: 378 TPWLETTLSIIEIFAEKGDVGNAENLFEELKK----ANYTKYTFVYNTLIKAYVKAKIND 433
           TP +    +++  + + G V  A  LF +L++     N + YT V N L K     ++ +
Sbjct: 410 TPDICLHSTLLFGYFKYGLVEEAMLLFSKLERNREDTNISFYTVVINGLCK---NDRVRE 466

Query: 434 PN-LLRRMILGGARPDAETYSLL 455
            + +  ++   G  PD  TY+++
Sbjct: 467 AHAIFEKLPSIGLIPDVRTYNVM 489



 Score = 38.5 bits (88), Expect = 8.3,   Method: Compositional matrix adjust.
 Identities = 48/203 (23%), Positives = 76/203 (37%), Gaps = 35/203 (17%)

Query: 286 SRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHL 345
           S    L+ EM+ +    +    N V + YC    ID A  +L      G   N +T+  L
Sbjct: 79  SAVVSLFREMRILGIPISDSILNIVTNSYCLRHRIDCAFSVLPIYLKTGIPFNVVTFNTL 138

Query: 346 ALGCFKSNLVEEG---FKAL--------------------------ELGMKLITTKKVRS 376
             G F  N V +    FK L                          E  + L+   +  +
Sbjct: 139 LGGLFAENKVTDAVVLFKKLVREKICEPNEVMYGTVMNGLSKRGHTEKTLSLLRIMEQGN 198

Query: 377 STPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVK----AKIN 432
           + P + T   +I+   +  ++  A NL  E+K+ N     F YN+LI    K     K+ 
Sbjct: 199 TKPDVRTYSIVIDALCKDINLDAAINLLNEMKQKNIPPNIFTYNSLIDGLCKLGQWEKVK 258

Query: 433 DPNLLRRMILGGARPDAETYSLL 455
              LL  M+     P+  T+S+L
Sbjct: 259 --TLLSEMVNLNINPNVHTFSIL 279


>gi|357499781|ref|XP_003620179.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355495194|gb|AES76397.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 517

 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 79/362 (21%), Positives = 146/362 (40%), Gaps = 53/362 (14%)

Query: 109 GVIKLSLEYMKKMRVLGHSISYLVFNRLI---ILNSS-------PGRRKTIPNILRQMKA 158
           G I  +   + K+  +G+  + +  N LI    LN          G+ K   ++  +M  
Sbjct: 111 GHIPSAFSVLTKILKMGYKPNTITLNTLIKGLCLNGKIHDKHCIVGKLKDAVDLFNKMIL 170

Query: 159 DKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTV 218
           + + P V TF IL+     +  ++    V + M    ++P  V+Y  L   + + +    
Sbjct: 171 ENINPDVYTFTILVDGFCKEGRVKEAKNVLAMMMIQGIKPGVVTYNSLMDGYFLVK---- 226

Query: 219 AETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSKSYVLAIEA 278
                                        + K K +    A +   P+++S  Y + I  
Sbjct: 227 ----------------------------QVNKAKSIFNTMAQLGVSPDIQS--YSILING 256

Query: 279 FGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPN 338
           F +I  +  A EL  EM   + +     Y+S+I   CK+G I  A  L+ EM   G  PN
Sbjct: 257 FCKIKMMDEAMELLKEMHHKQIIPNVVTYSSLIDGLCKSGKISYALKLVDEMHDRGQPPN 316

Query: 339 AITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVG 398
            +TY  +     K++ V+         + L+T  K +   P + T   +I+   + G + 
Sbjct: 317 IVTYSSILDALCKNHQVDNA-------IALLTQMKNQGIQPNMYTYTILIKGLCQSGKLE 369

Query: 399 NAENLFEELKKANYTKYTFVYNTLIKAYVKAKINDP--NLLRRMILGGARPDAETYSLLK 456
           +A  +FE+L    +    + Y  +I+ +    + D    LL +M   G  P+A+TY ++ 
Sbjct: 370 DARKVFEDLLVKGHNLNVYTYTVMIQGFCDKGLFDEALTLLSKMEDNGCIPNAKTYEIII 429

Query: 457 LA 458
           L+
Sbjct: 430 LS 431



 Score = 55.1 bits (131), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 63/298 (21%), Positives = 122/298 (40%), Gaps = 25/298 (8%)

Query: 101 LVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLI---ILNSSPGRRKTIPNILRQMK 157
           LV     +G +K +   +  M + G     + +N L+    L     + K+I N + Q+ 
Sbjct: 183 LVDGFCKEGRVKEAKNVLAMMMIQGIKPGVVTYNSLMDGYFLVKQVNKAKSIFNTMAQLG 242

Query: 158 ADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYT 217
              V+P + ++ IL+        ++  M++  +M   ++ PN V+Y  L      +   +
Sbjct: 243 ---VSPDIQSYSILINGFCKIKMMDEAMELLKEMHHKQIIPNVVTYSSLIDGLCKSGKIS 299

Query: 218 VAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSK----SYV 273
            A   V+ +       N  T   ++     L K   ++   A + ++ N   +    +Y 
Sbjct: 300 YALKLVDEMHDRGQPPNIVTYSSIL---DALCKNHQVDNAIALLTQMKNQGIQPNMYTYT 356

Query: 274 LAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMN 333
           + I+   +  ++  A +++ ++           Y  +I  +C  G  D+A  LL +M  N
Sbjct: 357 ILIKGLCQSGKLEDARKVFEDLLVKGHNLNVYTYTVMIQGFCDKGLFDEALTLLSKMEDN 416

Query: 334 GCKPNAITYRHLALGCFKSN-----------LVEEGFKA-LELGMKLITTKKVRSSTP 379
           GC PNA TY  + L  FK +           ++E  F   + L   LI +  V  S+P
Sbjct: 417 GCIPNAKTYEIIILSLFKKDENEMAEKLLCEMIETNFDGRVALTNDLIASIWVTGSSP 474


>gi|414591138|tpg|DAA41709.1| TPA: hypothetical protein ZEAMMB73_028111 [Zea mays]
          Length = 583

 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 90/353 (25%), Positives = 150/353 (42%), Gaps = 39/353 (11%)

Query: 122 RVLGH---SISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKI---E 175
           R LG    S+S L  + ++      GR      +L  M    V+ +   ++ L+     +
Sbjct: 166 RALGSCPGSVSPLAASVVVDGLCKSGRVDDARRLLDDMPRHGVSLNALCYNSLLDCYVRQ 225

Query: 176 ANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNW 235
            +D  ++ ++++   M+   +E    +Y IL  + + AR  +     VEAL   M  NN 
Sbjct: 226 KDDGRVQEILEI---MENEGIEATVGTYTILVDSLSTARDIS----KVEALFNEMKANNV 278

Query: 236 STLDVLI---ILYGYLAKGKDLERIWATVQEL------PNVRSKSYVLAIEAFGRIAQVS 286
              DV +   ++  Y   G ++ R    + E       PN R+  Y + I  F +I Q+ 
Sbjct: 279 VG-DVYLYTAVINAYCRAG-NMRRAAKVLDECVGNGVEPNERT--YGVLINGFCKIGQME 334

Query: 287 RAEELWLEMQSVKQLKATEQ--YNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRH 344
            AE L  +MQ   Q     Q  +N++I  YC+ G +D A  +   M   G + +  TY  
Sbjct: 335 AAEMLLADMQG--QGVGLNQIIFNTMIDGYCRKGMVDDALKIKAAMEKMGVELDIYTYNT 392

Query: 345 LALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLF 404
           LA G  + N ++E    L + +++          P   T  ++I I  + GD+  A  LF
Sbjct: 393 LACGLCRVNRLDEAKTLLHIMIEM-------GVVPNYVTYTTLISIHCKDGDMVEARRLF 445

Query: 405 EELKKANYTKYTFVYNTLIKAYV-KAKINDPNLLRR-MILGGARPDAETYSLL 455
            E+ +   T     YN +I  Y  K  I +    R+ M   G  PD  TY+ L
Sbjct: 446 REMAEKGATPSVVTYNVMIDGYTKKGSIREAERFRKEMEKKGFVPDVYTYASL 498



 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 98/424 (23%), Positives = 170/424 (40%), Gaps = 28/424 (6%)

Query: 45  ALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQGEKLFCCIPKD--YQNELLYNNLV 102
           A  ++E  +   P     L  S +++   K+  +    +L   +P+     N L YN+L+
Sbjct: 160 AAGLLERALGSCPGSVSPLAASVVVDGLCKSGRVDDARRLLDDMPRHGVSLNALCYNSLL 219

Query: 103 IACL---DKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKT--IPNILRQMK 157
              +   D G ++  LE M+        I   V    I+++S    R    +  +  +MK
Sbjct: 220 DCYVRQKDDGRVQEILEIMEN-----EGIEATVGTYTILVDSLSTARDISKVEALFNEMK 274

Query: 158 ADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYT 217
           A+ V   V  +  ++       N+    KV  +   + VEPNE +Y +L           
Sbjct: 275 ANNVVGDVYLYTAVINAYCRAGNMRRAAKVLDECVGNGVEPNERTYGVLINGFCKIGQME 334

Query: 218 VAETYVEALEKSMTGNNWSTLDVLIILYGYLAKG--KDLERIWATVQELPNVRSKSYVLA 275
            AE  +  ++    G N    + +I   GY  KG   D  +I A ++++  V    Y   
Sbjct: 335 AAEMLLADMQGQGVGLNQIIFNTMI--DGYCRKGMVDDALKIKAAMEKM-GVELDIYTYN 391

Query: 276 IEAFG--RIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMN 333
             A G  R+ ++  A+ L   M  +  +     Y ++IS++CK+G + +A  L +EM+  
Sbjct: 392 TLACGLCRVNRLDEAKTLLHIMIEMGVVPNYVTYTTLISIHCKDGDMVEARRLFREMAEK 451

Query: 334 GCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAE 393
           G  P+ +TY  +  G  K   + E         +     + +   P + T  S++     
Sbjct: 452 GATPSVVTYNVMIDGYTKKGSIREA-------ERFRKEMEKKGFVPDVYTYASLVHGHCV 504

Query: 394 KGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKINDP--NLLRRMILGGARPDAET 451
            G V  A  LFEE+K+         Y  LI    K   ++    L   M+  G  PD   
Sbjct: 505 NGKVDVALKLFEEMKQRGTEPNVVAYTALISGLAKEGRSEAAFQLYDDMLKAGLIPDDSL 564

Query: 452 YSLL 455
           YS L
Sbjct: 565 YSAL 568


>gi|302757529|ref|XP_002962188.1| hypothetical protein SELMODRAFT_60915 [Selaginella moellendorffii]
 gi|300170847|gb|EFJ37448.1| hypothetical protein SELMODRAFT_60915 [Selaginella moellendorffii]
          Length = 535

 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 89/406 (21%), Positives = 178/406 (43%), Gaps = 27/406 (6%)

Query: 60  PKELDYSYLLEFTIKNHGISQGEKLFC-CIPKDYQNELL-YNNLVIACLDKGVIKLSLEY 117
           P  L Y+ L++   K H + +   +F   I K ++ +++ Y++L+      G +  + + 
Sbjct: 139 PTLLTYTVLVDGLCKAHKVERACDVFEEMIRKGHKPDIIAYSSLIDGLSKAGRVDEARKL 198

Query: 118 MKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEAN 177
           +  M   G   + + +  ++      GR +     +++M+  ++ P V T+  ++     
Sbjct: 199 VDLMIARGPPPTAVAYTSIVAGLCKCGRIQEAVKTIQEMRRRRLRPRVDTYSFIVTGYIG 258

Query: 178 DHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTV-----AETYVEALEKSMTG 232
              +E    V  +M   +  P+ +SY +   A     LY++     AE   E + +    
Sbjct: 259 MGKVEEAFAVMEEMADRDCAPDTISYTMFIEA-----LYSIGRREEAEKVFETMVEKGCK 313

Query: 233 NNWSTLDVLIILY---GYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAE 289
            +  T  ++I  +   G +A    + R+       PN     Y + ++ F + +++  A 
Sbjct: 314 PDMHTYGIIIDNFCKEGSMAAATHVLRLMDKAAVKPN--RYIYTMIMDGFVKSSRLEEAL 371

Query: 290 ELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNG--CKPNAITYRHLAL 347
           EL+  +     L +T  YN+VI+  CK   +D+A  LL+EM       +P+ +TY  +  
Sbjct: 372 ELYQRILKDGILPSTVTYNTVINALCKLKKMDEALELLREMQRRKEELEPSIVTYSMIIH 431

Query: 348 GCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEEL 407
           G  K  + E   +A +L  ++I    +    P   T  S+I+  A  G V  A  L EE+
Sbjct: 432 GLGKVGMEE---RAFDLLAEMIDNGVI----PDCFTYTSLIQTLAGAGKVSRAMELLEEM 484

Query: 408 KKANYTKYTFVYNTLIKAYVKAKINDP-NLLRRMILGGARPDAETY 452
            KA        Y TL++   ++ ++   +LL+ M+  G  P+  T+
Sbjct: 485 LKAGIFPDDHTYGTLVQILCRSDVDAAWDLLQEMMRNGHTPNEFTF 530



 Score = 58.9 bits (141), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 78/344 (22%), Positives = 140/344 (40%), Gaps = 53/344 (15%)

Query: 155 QMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATA----- 209
           +M A K  P + T+ +L+      H +E    V+ +M R   +P+ ++Y  L        
Sbjct: 131 KMVASKCEPTLLTYTVLVDGLCKAHKVERACDVFEEMIRKGHKPDIIAYSSLIDGLSKAG 190

Query: 210 -------------------HAVARLYTVA--------ETYVEALEKSMTGNNWSTLDVL- 241
                               AVA    VA        +  V+ +++         +D   
Sbjct: 191 RVDEARKLVDLMIARGPPPTAVAYTSIVAGLCKCGRIQEAVKTIQEMRRRRLRPRVDTYS 250

Query: 242 IILYGYLAKGKDLERIWATVQELPN----VRSKSYVLAIEAFGRIAQVSRAEELWLEMQS 297
            I+ GY+  GK +E  +A ++E+ +      + SY + IEA   I +   AE+++  M  
Sbjct: 251 FIVTGYIGMGK-VEEAFAVMEEMADRDCAPDTISYTMFIEALYSIGRREEAEKVFETMVE 309

Query: 298 VKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEE 357
                    Y  +I  +CK G +  A+ +L+ M     KPN   Y  +  G  KS+ +EE
Sbjct: 310 KGCKPDMHTYGIIIDNFCKEGSMAAATHVLRLMDKAAVKPNRYIYTMIMDGFVKSSRLEE 369

Query: 358 GFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKK------AN 411
              ALEL  +++    + S+  +     ++I    +   +  A  L  E+++       +
Sbjct: 370 ---ALELYQRILKDGILPSTVTY----NTVINALCKLKKMDEALELLREMQRRKEELEPS 422

Query: 412 YTKYTFVYNTLIKAYVKAKINDPNLLRRMILGGARPDAETYSLL 455
              Y+ + + L K  ++ +  D  LL  MI  G  PD  TY+ L
Sbjct: 423 IVTYSMIIHGLGKVGMEERAFD--LLAEMIDNGVIPDCFTYTSL 464



 Score = 47.0 bits (110), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 57/295 (19%), Positives = 119/295 (40%), Gaps = 36/295 (12%)

Query: 163 PHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETY 222
           P+VS+F+IL++  A   + E +  +  +MK   +  N  ++ ++ +A    R        
Sbjct: 27  PNVSSFNILLRGFAARDDFEVVNALLREMKARGITSNGATHGVILSALCARR-------- 78

Query: 223 VEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRI 282
              L+K+++  N  T +                R++  + E P+  S +Y   ++   + 
Sbjct: 79  --DLDKAVSYFNSRTEEAC--------------RLFEAI-EAPD--SVTYTAIVDGLFKA 119

Query: 283 AQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITY 342
                  E + +M + K       Y  ++   CK   +++A  + +EM   G KP+ I Y
Sbjct: 120 GNYDAGLEYYEKMVASKCEPTLLTYTVLVDGLCKAHKVERACDVFEEMIRKGHKPDIIAY 179

Query: 343 RHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAEN 402
             L  G  K+  V+E  K ++L +        R   P      SI+    + G +  A  
Sbjct: 180 SSLIDGLSKAGRVDEARKLVDLMI-------ARGPPPTAVAYTSIVAGLCKCGRIQEAVK 232

Query: 403 LFEELKKANYTKYTFVYNTLIKAYVK-AKINDP-NLLRRMILGGARPDAETYSLL 455
             +E+++         Y+ ++  Y+   K+ +   ++  M      PD  +Y++ 
Sbjct: 233 TIQEMRRRRLRPRVDTYSFIVTGYIGMGKVEEAFAVMEEMADRDCAPDTISYTMF 287


>gi|410110071|gb|AFV61115.1| pentatricopeptide repeat-containing protein 123, partial [Aloysia
           macrostachya]
          Length = 437

 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 74/322 (22%), Positives = 149/322 (46%), Gaps = 22/322 (6%)

Query: 98  YNNLVIACLDKGVIKLSLEYMKKM---RVLGHSISYLVFNRLIILNSSPGRRKTIPNILR 154
           Y+ L+     +G+   +L +++KM   RV G  + Y   + LI L+          +I  
Sbjct: 15  YSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLY---SNLIELSRKLCDYSKAISIFS 71

Query: 155 QMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVAR 214
           ++K     P +  ++ ++ +            + S+M+ + V PN  SY  L T +   +
Sbjct: 72  RLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVMPNTASYSTLLTMYVENK 131

Query: 215 LYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQEL---PNVRSKS 271
            +  A +    + +     + +T +++I +YG L   K+ ++++  ++++   PNV S +
Sbjct: 132 KFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYN 191

Query: 272 YVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMS 331
            +L +  +G       A  L+  MQ    ++    YNS++ +Y K    +KA+ L++EM 
Sbjct: 192 TLLRV--YGDAELFGEAIHLFXLMQRKNIVQNVVTYNSMMMIYGKTLEHEKANNLIQEMQ 249

Query: 332 MNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTL--SIIE 389
             G +PN+ITY         S ++    K  +L    +  +K+RSS   ++  L  ++I 
Sbjct: 250 NRGIEPNSITY---------STIISIWGKVGKLDRAAMLFQKLRSSGVEIDQVLYQTMIV 300

Query: 390 IFAEKGDVGNAENLFEELKKAN 411
            +   G V +A+ L  ELK  +
Sbjct: 301 AYERAGLVAHAKRLLHELKSPD 322



 Score = 42.7 bits (99), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 53/245 (21%), Positives = 97/245 (39%), Gaps = 45/245 (18%)

Query: 189 SDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYL 248
            +M++  + P+  +Y  L T      L+  A ++++ +E+     +       ++LY  L
Sbjct: 1   DEMRQRALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGD-------LVLYSNL 53

Query: 249 AKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYN 308
               +L R           +   Y  AI  F R+ +     +L               YN
Sbjct: 54  I---ELSR-----------KLCDYSKAISIFSRLKRSGFTPDLV-------------AYN 86

Query: 309 SVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKL 368
           ++I+V+ K     +A  L+ EM   G  PN  +Y  L        +  E  K LE    L
Sbjct: 87  AMINVFGKAKLFREARSLISEMRTAGVMPNTASYSTLL------TMYVENKKFLE---AL 137

Query: 369 ITTKKVRSSTPWLETTLS--IIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAY 426
               ++R     L+ T    +I+++ + G    A+ LF  ++K         YNTL++ Y
Sbjct: 138 SVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVY 197

Query: 427 VKAKI 431
             A++
Sbjct: 198 GDAEL 202


>gi|359492699|ref|XP_002280968.2| PREDICTED: pentatricopeptide repeat-containing protein
           At1g19720-like [Vitis vinifera]
          Length = 1545

 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 85/400 (21%), Positives = 176/400 (44%), Gaps = 52/400 (13%)

Query: 91  DYQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIP 150
           DY++ + +N+++     KG ++ S +  +KM+  G     + +N LI   S  G+     
Sbjct: 247 DYRDRVSWNSIITGYCQKGELEKSHQLFEKMQEEGIEPGLVTWNILINSYSQSGKCDDAM 306

Query: 151 NILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAH 210
            ++++M++ ++ P V T+  ++   A ++     ++++ +M  + +EPN V+     +A 
Sbjct: 307 ELMKKMESFRIVPDVFTWTSMISGFAQNNRRSQALELFREMLLAGIEPNGVTVTSGISAC 366

Query: 211 AVAR-------LYTVAETYVEALEKSMTGNN----------------------------W 235
           A  +       L++VA   +  +E  + GN+                            W
Sbjct: 367 ASLKALKKGMELHSVA-VKIGCVEDLLVGNSLIDMYSKSGELEDARRVFDMILKKDVYTW 425

Query: 236 STLDVLIILYGYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEM 295
           +++       GY  K  DL          PNV   ++   I  + +     +A +L+  M
Sbjct: 426 NSMIGGYCQAGYCGKAYDLFIKMHESDVPPNV--VTWNAMISGYIQNGDEDQAMDLFHRM 483

Query: 296 QSVKQLK-ATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNL 354
           +    +K  T  +NS+I+ Y +NG  +KA G+ ++M     +PN++T   +   C  +NL
Sbjct: 484 EKDGLIKRDTASWNSLIAGYLQNGHKNKALGIFRQMQSFCIRPNSVTMLSILPAC--ANL 541

Query: 355 VEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTK 414
           V    K ++     I  + + S    L     +I+ +A+ G++  A+ +F+ +     +K
Sbjct: 542 VAA--KKVKEIHGCILRRNLGSE---LSVANCLIDTYAKSGNIVYAQTIFQGIS----SK 592

Query: 415 YTFVYNTLIKAYVKAKINDP--NLLRRMILGGARPDAETY 452
               +N+LI  YV    +D   +L  +M   G +P   T+
Sbjct: 593 DIISWNSLIAGYVLHGCSDSALDLFDQMTKMGVKPSRGTF 632



 Score = 40.4 bits (93), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 34/120 (28%), Positives = 60/120 (50%), Gaps = 18/120 (15%)

Query: 315 CKNGFIDKASGLLKEMSMNGC--KPNAITYRHLALGCFKSNLVEEGFKALELGMKL-ITT 371
           CKNG +  A   L  ++  G   KPN  TY  L   C     +++G  + ELG KL    
Sbjct: 61  CKNGRLADAIACLDAIAQGGSNVKPN--TYMQLLQSC-----IDQG--SAELGRKLHARI 111

Query: 372 KKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKI 431
             +    P++ET L  + ++A+ G +G A  +F E+++ N     + ++ +I AY + ++
Sbjct: 112 GLLEEMNPFVETKL--VSMYAKCGSLGEARKVFGEMRERNL----YAWSAMIGAYSREQM 165


>gi|168047776|ref|XP_001776345.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162672305|gb|EDQ58844.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 503

 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 70/274 (25%), Positives = 126/274 (45%), Gaps = 7/274 (2%)

Query: 94  NELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLII--LNSSPGRRKTIP- 150
           N ++YN L+ A    G ++ +   M +MR  G   +   +N LI   L + P R+  +  
Sbjct: 208 NVVIYNILIDAYGRVGQLEEAEGLMTEMRERGIQPNVGTYNALITGYLEAKPKRQFVVAE 267

Query: 151 NILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAH 210
            ++ +M+A  + P V TF +L+    ++   E   +V++ MK   V+PN  SY  L  A+
Sbjct: 268 GLIEEMEASGLYPDVVTFTMLLGAYGHEGLTEQAEQVFNRMKARGVQPNSYSYTALINAY 327

Query: 211 AVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSK 270
           A  R    A    E + K        T   L+  Y      + ++ +W +++    V ++
Sbjct: 328 AERRCPEKAARAFEMIRKQGVNPTVETYTALLDAYRRAGDLEMVQAVWKSMKVEGCVATR 387

Query: 271 -SYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKE 329
            +Y+  ++AF +  +   A +L  E ++         YN +++ Y + G   KAS +L E
Sbjct: 388 VTYMTILDAFQKQGRYKEARDLIEEFKNQGHKPDLMVYNMLLNSYMRGGRHVKASDILLE 447

Query: 330 MSMNGCKPNAITYRHLALGCFKSNLVEEGFKALE 363
           M   G  P++ TY  L  G  +   V +  KAL+
Sbjct: 448 MKTAGFLPDSFTYCTLIYGFLR---VRDQTKALK 478



 Score = 73.2 bits (178), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 106/463 (22%), Positives = 176/463 (38%), Gaps = 59/463 (12%)

Query: 41  LNKRALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQGEKLFCCIPKDYQ------- 93
           L ++ L    WV    P       ++ L  F  +     Q    F  +PKD Q       
Sbjct: 49  LTEQVLSFFRWVRLHEPCLCDPRSFTILFTFLGRMAMPDQALVFFGMLPKDKQFHSVHVY 108

Query: 94  NEL-------------LYNNLVI----------------ACLDKGVIKLSLEYMKKMRVL 124
           N L             LY+NL                  A    G +K      + M   
Sbjct: 109 NTLITCLTNCNRYDLELYHNLAFYEVFPDSVTFSVLMNSAVKGGGSLKEVWALYQDMVQR 168

Query: 125 GHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGL 184
           G S S  VF   I      GR K    I  +M+   V  +V  ++IL+        +E  
Sbjct: 169 GISPSVSVFGTFIKAFCDAGRLKEALLITTEMEKLNVPFNVVIYNILIDAYGRVGQLEEA 228

Query: 185 MKVYSDMKRSEVEPNEVSYCILATAHAVA---RLYTVAETYVEALEKSMTGNNWSTLDVL 241
             + ++M+   ++PN  +Y  L T +  A   R + VAE  +E +E S    +  T  +L
Sbjct: 229 EGLMTEMRERGIQPNVGTYNALITGYLEAKPKRQFVVAEGLIEEMEASGLYPDVVTFTML 288

Query: 242 IILYGYLAKGKDLERIWATVQE---LPNVRSKSYVLAIEAFGR---IAQVSRAEELWLEM 295
           +  YG+    +  E+++  ++     PN  S SY   I A+       + +RA E+ +  
Sbjct: 289 LGAYGHEGLTEQAEQVFNRMKARGVQPN--SYSYTALINAYAERRCPEKAARAFEM-IRK 345

Query: 296 QSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLV 355
           Q V      E Y +++  Y + G ++    + K M + GC    +TY  +     K    
Sbjct: 346 QGVN--PTVETYTALLDAYRRAGDLEMVQAVWKSMKVEGCVATRVTYMTILDAFQKQGRY 403

Query: 356 EEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKY 415
           +E          LI   K +   P L     ++  +   G    A ++  E+K A +   
Sbjct: 404 KEA-------RDLIEEFKNQGHKPDLMVYNMLLNSYMRGGRHVKASDILLEMKTAGFLPD 456

Query: 416 TFVYNTLIKAYVKAKINDPNL--LRRMILGGARPDAETYSLLK 456
           +F Y TLI  +++ +     L   R M+  G  PD +TY+ L+
Sbjct: 457 SFTYCTLIYGFLRVRDQTKALKYHREMMNRGQLPDPKTYAKLR 499


>gi|302759535|ref|XP_002963190.1| hypothetical protein SELMODRAFT_79513 [Selaginella moellendorffii]
 gi|300168458|gb|EFJ35061.1| hypothetical protein SELMODRAFT_79513 [Selaginella moellendorffii]
          Length = 573

 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 90/372 (24%), Positives = 153/372 (41%), Gaps = 20/372 (5%)

Query: 94  NELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILN--SSPGRRKTIPN 151
           NE  YN +V       +   + E +K+MR  G S++  +     ++N     G       
Sbjct: 40  NERTYNVVVNGLCKARLTSKAYEVLKEMRD-GKSVAPDLVTYSTVINGFCKQGEMDRACE 98

Query: 152 ILRQMKA-DKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAH 210
           ILR+M   D +AP V T+  ++     D  ++   ++  +MK   VEP++ ++  L T  
Sbjct: 99  ILREMVTRDGIAPDVVTYTSVVDGLCRDGKMDRACEMVREMKLKGVEPDKFTFSALITGW 158

Query: 211 AVARLYTVA-ETYVEALEKSMTGNNWSTLDVLIILY---GYLAKGKDLERIWATVQELPN 266
             AR    A + Y E L  S    +  T   LI  +   G L K   +  +    + +PN
Sbjct: 159 CNARKVDEALKLYKEILTSSSWKPDVVTYTALIDGFCKSGNLEKAMKMLGVMEGRKCVPN 218

Query: 267 VRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGL 326
           V + S +L      +   + +A +L+  M S   +     Y ++I   C    +D A  L
Sbjct: 219 VVTYSSLL--HGLCKAGDLDQALDLFRRMTSKGCVPNVVTYTTLIHGLCAAHKVDAARLL 276

Query: 327 LKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLS 386
           + EM+   C P+ ++Y  L  G  +   +EE         +L      +S  P   T   
Sbjct: 277 MDEMTATCCPPDTVSYNALLDGYCRLGRIEE-------AKQLFKEMATKSCLPDRITYTC 329

Query: 387 IIEIFAEKGDVGNAENLFEELKKANYTKYTFV-YNTLIKAYVKAK--INDPNLLRRMILG 443
           ++  F     +  A  L E +K A       V Y+ ++  Y +AK  +     ++ MI  
Sbjct: 330 LVRGFCNASRLEEARFLLENMKTAAGIDPDVVTYSIVVAGYSRAKRFVEAAEFIQEMIAR 389

Query: 444 GARPDAETYSLL 455
              P+A TYS L
Sbjct: 390 NVAPNAVTYSSL 401



 Score = 67.4 bits (163), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 63/269 (23%), Positives = 122/269 (45%), Gaps = 18/269 (6%)

Query: 195 EVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDL 254
           E +P  V++ I+      A     A    E + +     N  T +V++     L K +  
Sbjct: 2   ECQPTVVTWTIIIDGFCKANQLKQALACFEKM-REFVAPNERTYNVVV---NGLCKARLT 57

Query: 255 ERIWATVQELPNVRSK-----SYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKA-TEQYN 308
            + +  ++E+ + +S      +Y   I  F +  ++ RA E+  EM +   +      Y 
Sbjct: 58  SKAYEVLKEMRDGKSVAPDLVTYSTVINGFCKQGEMDRACEILREMVTRDGIAPDVVTYT 117

Query: 309 SVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKL 368
           SV+   C++G +D+A  +++EM + G +P+  T+  L  G   +  V+E   AL+L  ++
Sbjct: 118 SVVDGLCRDGKMDRACEMVREMKLKGVEPDKFTFSALITGWCNARKVDE---ALKLYKEI 174

Query: 369 ITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVK 428
           +T+    S  P + T  ++I+ F + G++  A  +   ++          Y++L+    K
Sbjct: 175 LTSS---SWKPDVVTYTALIDGFCKSGNLEKAMKMLGVMEGRKCVPNVVTYSSLLHGLCK 231

Query: 429 AKINDP--NLLRRMILGGARPDAETYSLL 455
           A   D   +L RRM   G  P+  TY+ L
Sbjct: 232 AGDLDQALDLFRRMTSKGCVPNVVTYTTL 260



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 70/335 (20%), Positives = 145/335 (43%), Gaps = 26/335 (7%)

Query: 45  ALEVMEWVIRERPYRPKELDYSYL---------LEFTIKNHGISQGEKLFCCIPKDYQNE 95
           AL++ + ++    ++P  + Y+ L         LE  +K  G+ +G K   C+P    N 
Sbjct: 167 ALKLYKEILTSSSWKPDVVTYTALIDGFCKSGNLEKAMKMLGVMEGRK---CVP----NV 219

Query: 96  LLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQ 155
           + Y++L+      G +  +L+  ++M   G   + + +  LI    +  +      ++ +
Sbjct: 220 VTYSSLLHGLCKAGDLDQALDLFRRMTSKGCVPNVVTYTTLIHGLCAAHKVDAARLLMDE 279

Query: 156 MKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARL 215
           M A    P   +++ L+        IE   +++ +M      P+ ++Y  L      A  
Sbjct: 280 MTATCCPPDTVSYNALLDGYCRLGRIEEAKQLFKEMATKSCLPDRITYTCLVRGFCNASR 339

Query: 216 YTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQEL------PNVRS 269
              A   +E + K+  G +   +   I++ GY ++ K        +QE+      PN  +
Sbjct: 340 LEEARFLLENM-KTAAGIDPDVVTYSIVVAGY-SRAKRFVEAAEFIQEMIARNVAPN--A 395

Query: 270 KSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKE 329
            +Y   I+   +  +V  A E+   M + +   +   +NSVI   C+ G +D+A  LL  
Sbjct: 396 VTYSSLIDGLCKAGRVDHAMEVLKNMVNKRVEPSVGTFNSVIGALCRLGDMDEAWKLLVA 455

Query: 330 MSMNGCKPNAITYRHLALGCFKSNLVEEGFKALEL 364
           M+ +G +P  +TY  L  G  ++  +E  ++  E+
Sbjct: 456 MAAHGLEPGMVTYTTLLEGFSRTGRMEIAYELFEV 490



 Score = 45.8 bits (107), Expect = 0.041,   Method: Compositional matrix adjust.
 Identities = 69/364 (18%), Positives = 131/364 (35%), Gaps = 58/364 (15%)

Query: 49  MEWVIRERPYRPKELDYSYLLEFTIKNHGISQGEKLF------CCIPKDYQNELLYNNLV 102
           M  V+  R   P  + YS LL    K   + Q   LF       C+P    N + Y  L+
Sbjct: 206 MLGVMEGRKCVPNVVTYSSLLHGLCKAGDLDQALDLFRRMTSKGCVP----NVVTYTTLI 261

Query: 103 IACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVA 162
                   +  +   M +M         + +N L+      GR +    + ++M      
Sbjct: 262 HGLCAAHKVDAARLLMDEMTATCCPPDTVSYNALLDGYCRLGRIEEAKQLFKEMATKSCL 321

Query: 163 PHVSTFHILMKIEANDHNIEGLMKVYSDMKRSE-VEPNEVSYCILATAHAVARLYTVAET 221
           P   T+  L++   N   +E    +  +MK +  ++P+ V+Y I+   ++ A+ +  A  
Sbjct: 322 PDRITYTCLVRGFCNASRLEEARFLLENMKTAAGIDPDVVTYSIVVAGYSRAKRFVEAAE 381

Query: 222 YVEALEKSMTGNNWSTLDVLI--------------------------------ILYGYLA 249
           +++ +       N  T   LI                                 + G L 
Sbjct: 382 FIQEMIARNVAPNAVTYSSLIDGLCKAGRVDHAMEVLKNMVNKRVEPSVGTFNSVIGALC 441

Query: 250 KGKDLERIWATVQEL------PNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVK---- 299
           +  D++  W  +  +      P +   +Y   +E F R  ++  A EL+  M+       
Sbjct: 442 RLGDMDEAWKLLVAMAAHGLEPGM--VTYTTLLEGFSRTGRMEIAYELFEVMRKKAKKSS 499

Query: 300 ---QLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVE 356
               L   + ++++I   CK   IDKA  +++E+    C+P       +  G  ++   E
Sbjct: 500 SAANLVPEQAFSALIRGLCKAREIDKAMAVVEELRSRECEPAEEDCLAIVDGLLRAGRTE 559

Query: 357 EGFK 360
           E  K
Sbjct: 560 EAGK 563


>gi|224145829|ref|XP_002325779.1| predicted protein [Populus trichocarpa]
 gi|222862654|gb|EEF00161.1| predicted protein [Populus trichocarpa]
          Length = 586

 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 83/363 (22%), Positives = 154/363 (42%), Gaps = 49/363 (13%)

Query: 98  YNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMK 157
           Y+ L+ +     ++  +L+    M+  G S + + +  LI    S  R K    +L +M 
Sbjct: 234 YSTLIDSLCKDRLVNEALDIFSYMKAKGISPTVVSYTSLIQGLCSFSRWKEASAMLNEMT 293

Query: 158 ADKVAPHVSTFHILMKIEANDHNI---EGLMKVYSDMKRSEVEPNEVSYCILATAHAVAR 214
           +  + P + TF +L+ I   + N+   +G++K  ++M    VEPN ++Y      +++  
Sbjct: 294 SLNIMPDIVTFSLLIDIFCKEGNVLEAQGVLKTMTEMG---VEPNVITY------NSLMH 344

Query: 215 LYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSKSYVL 274
            Y++    VEA +           DV+I       +G             P+V S  Y +
Sbjct: 345 GYSLQMEVVEARK---------LFDVMI------TRGCK-----------PDVFS--YSI 376

Query: 275 AIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNG 334
            I  +  + ++  A++L+ EM        T  Y ++I  +C+ G + +A  L K+M  NG
Sbjct: 377 LINGYCMVKRIDEAKQLFNEMIHQGLTPNTVSYTTLIHAFCQLGKLREARELFKDMHTNG 436

Query: 335 CKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEK 394
             P+  TY  L  G  K   + + F       +L    +     P L     +I+   + 
Sbjct: 437 YLPDLCTYSVLLEGFCKQGYLGKAF-------RLFRAMQGTYLKPNLVMYTILIDSMCKS 489

Query: 395 GDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKINDPNL--LRRMILGGARPDAETY 452
           G++ +A  LF EL          +Y T+I    K  + D  L   R+M   G  P+  +Y
Sbjct: 490 GNLNHARKLFSELFVHGLQPDVQIYTTIINGLCKEGLLDEALEAFRKMEEDGCPPNEFSY 549

Query: 453 SLL 455
           +++
Sbjct: 550 NVI 552



 Score = 55.8 bits (133), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 53/194 (27%), Positives = 89/194 (45%), Gaps = 15/194 (7%)

Query: 163 PHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETY 222
           P V ++ IL+        I+   +++++M    + PN VSY  L   HA  +L  + E  
Sbjct: 369 PDVFSYSILINGYCMVKRIDEAKQLFNEMIHQGLTPNTVSYTTLI--HAFCQLGKLREA- 425

Query: 223 VEALEKSMTGNNW----STLDVLIILY---GYLAKGKDLERIWATVQELPNVRSKSYVLA 275
              L K M  N +     T  VL+  +   GYL K   L R        PN+    Y + 
Sbjct: 426 -RELFKDMHTNGYLPDLCTYSVLLEGFCKQGYLGKAFRLFRAMQGTYLKPNL--VMYTIL 482

Query: 276 IEAFGRIAQVSRAEELWLEMQSVKQLKATEQ-YNSVISVYCKNGFIDKASGLLKEMSMNG 334
           I++  +   ++ A +L+ E+  V  L+   Q Y ++I+  CK G +D+A    ++M  +G
Sbjct: 483 IDSMCKSGNLNHARKLFSEL-FVHGLQPDVQIYTTIINGLCKEGLLDEALEAFRKMEEDG 541

Query: 335 CKPNAITYRHLALG 348
           C PN  +Y  +  G
Sbjct: 542 CPPNEFSYNVIIRG 555



 Score = 44.7 bits (104), Expect = 0.094,   Method: Compositional matrix adjust.
 Identities = 41/161 (25%), Positives = 67/161 (41%), Gaps = 12/161 (7%)

Query: 299 KQLKATEQYNSVISVYCK-NGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFK-SNLVE 356
           K L    Q+N ++S   +   + D    L K+M + G  PN  T  ++ + CF     V+
Sbjct: 85  KPLPCIIQFNKLLSAIVRMRQYYDAVISLSKQMELAGLSPNTCTL-NILINCFCLMQHVD 143

Query: 357 EGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYT 416
            GF  L   +KL          P + T  ++I    + G+   A  LF+++         
Sbjct: 144 LGFSVLAKVIKL-------GLQPTIITFTTLINGLCKAGEFAQALELFDDMVARGCQPDV 196

Query: 417 FVYNTLIKAYVKA--KINDPNLLRRMILGGARPDAETYSLL 455
           + Y T+I    K         L+++M   G +PD  TYS L
Sbjct: 197 YTYTTIINGLCKMGETAAAAGLIKKMGEVGCQPDVVTYSTL 237


>gi|218188645|gb|EEC71072.1| hypothetical protein OsI_02831 [Oryza sativa Indica Group]
          Length = 800

 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 83/374 (22%), Positives = 156/374 (41%), Gaps = 31/374 (8%)

Query: 95  ELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLI--ILNSSPGRRKTIPNI 152
           ++ Y  L+  C ++G+ + + E  ++MR  G   S   FN +I  +LN      K   ++
Sbjct: 317 DVTYTVLIRGCTEEGMPEKAYELCRQMRDHGLLPSTNEFNMVIKGLLNDK--LWKDAVSL 374

Query: 153 LRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAV 212
            ++M AD   P   T++IL+        I   + ++  M  + V+P  V+Y  L   + V
Sbjct: 375 FKEM-ADSGIPDAFTYNILIHWLCQRRKIREALNLWEKMNETGVKPYIVTYHSLLLCYCV 433

Query: 213 -ARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKG----KDLERIWATVQELP-- 265
              +    + Y E   K  T N        ++ Y  L KG       ++ +A + E+   
Sbjct: 434 NGCMDEAVKLYTEMPGKGFTPN--------VVTYTTLMKGHINKAAFDKAYALLAEMKQN 485

Query: 266 --NVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKA 323
             +    +Y   I     + +V    E+    ++   +     YNS+I+ + K G +  A
Sbjct: 486 GVSCNDYTYNTLINGLCVVGRVCEVGEMLKRFETEGFVPTAMTYNSIINGFIKAGMMGSA 545

Query: 324 SGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLET 383
             + ++M   G  PN +TY     G  K++         +L +K++   + +   P +  
Sbjct: 546 FAVYQQMCAKGIPPNIVTYTSFIDGYCKTS-------CCDLALKMLNDVRCKGLRPDIAA 598

Query: 384 TLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKINDPNL--LRRMI 441
             S+I  F ++G++ +A  +   + K        VYN+ I  Y   K+ +  L    +MI
Sbjct: 599 YNSLIYGFCQEGNMSHALQVLVLMLKDGLLPNISVYNSFITGYKNLKMMEEALRFYEKMI 658

Query: 442 LGGARPDAETYSLL 455
             G   D  TY+ L
Sbjct: 659 KEGIDLDTATYTTL 672



 Score = 60.1 bits (144), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 91/492 (18%), Positives = 189/492 (38%), Gaps = 92/492 (18%)

Query: 43  KRALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQGEKLFCCIPKDY-----QNELL 97
           ++AL++ E  +R+    P ++ Y+ L+    +  G+ +     C   +D+      NE  
Sbjct: 299 RKALDIFEETLRDG-LVPTDVTYTVLIRGCTE-EGMPEKAYELCRQMRDHGLLPSTNE-- 354

Query: 98  YNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMK 157
           +N ++   L+  + K ++   K+M   G   ++  +N LI       + +   N+  +M 
Sbjct: 355 FNMVIKGLLNDKLWKDAVSLFKEMADSGIPDAF-TYNILIHWLCQRRKIREALNLWEKMN 413

Query: 158 ADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYT 217
              V P++ T+H L+     +  ++  +K+Y++M      PN V+Y  L   H     + 
Sbjct: 414 ETGVKPYIVTYHSLLLCYCVNGCMDEAVKLYTEMPGKGFTPNVVTYTTLMKGHINKAAFD 473

Query: 218 VAETYVEALEKSMTGNNWSTLDVLI---------------------------------IL 244
            A   +  ++++    N  T + LI                                 I+
Sbjct: 474 KAYALLAEMKQNGVSCNDYTYNTLINGLCVVGRVCEVGEMLKRFETEGFVPTAMTYNSII 533

Query: 245 YGYLAKGKDLERIWATVQEL------PNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSV 298
            G++  G  +   +A  Q++      PN+   +Y   I+ + + +    A ++  +++  
Sbjct: 534 NGFIKAGM-MGSAFAVYQQMCAKGIPPNI--VTYTSFIDGYCKTSCCDLALKMLNDVRCK 590

Query: 299 KQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEG 358
                   YNS+I  +C+ G +  A  +L  M  +G  PN   Y     G     ++EE 
Sbjct: 591 GLRPDIAAYNSLIYGFCQEGNMSHALQVLVLMLKDGLLPNISVYNSFITGYKNLKMMEEA 650

Query: 359 FKALE----------------------------LGMKLITTKKVRSSTPWLETTLSIIEI 390
            +  E                              +KL +    + + P   T  ++   
Sbjct: 651 LRFYEKMIKEGIDLDTATYTTLIDGFSKDGNVTFALKLYSEMVAKGNIPDHITFTALTHG 710

Query: 391 FAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKA-------KINDPNLLRRMILG 443
               GD+ +A  L +E+ + +      +YN LI  Y++        +++D  L R+++  
Sbjct: 711 LCRNGDIDDARKLLDEMNRLDIRPNVLMYNMLINGYLRNGKLQEAFRLHDEMLERKIM-- 768

Query: 444 GARPDAETYSLL 455
              PD  TY +L
Sbjct: 769 ---PDDTTYDIL 777



 Score = 50.1 bits (118), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 75/375 (20%), Positives = 137/375 (36%), Gaps = 36/375 (9%)

Query: 114 SLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMK 173
           +L  ++KM+  G       FN ++ +    GR +   +I  ++ A      V     LM 
Sbjct: 231 ALLVLRKMQDAGFVPWDFTFNSVVDVLVKGGRMEEALHIKDELLATGKKMSVVLATTLMH 290

Query: 174 IEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGN 233
                  +   + ++ +  R  + P +V+Y +L        +   A      +     G 
Sbjct: 291 GYCLQREVRKALDIFEETLRDGLVPTDVTYTVLIRGCTEEGMPEKAYELCRQMRDH--GL 348

Query: 234 NWSTLDVLIILYGYLAKG--KDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEEL 291
             ST +  +++ G L     KD   ++  + +     + +Y + I    +  ++  A  L
Sbjct: 349 LPSTNEFNMVIKGLLNDKLWKDAVSLFKEMADSGIPDAFTYNILIHWLCQRRKIREALNL 408

Query: 292 WLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFK 351
           W +M           Y+S++  YC NG +D+A  L  EM   G  PN +TY  L  G   
Sbjct: 409 WEKMNETGVKPYIVTYHSLLLCYCVNGCMDEAVKLYTEMPGKGFTPNVVTYTTLMKGHIN 468

Query: 352 SNLVEEGFKAL-----------------------------ELGMKLITTKKVRSSTPWLE 382
               ++ +  L                             E+G +++   +     P   
Sbjct: 469 KAAFDKAYALLAEMKQNGVSCNDYTYNTLINGLCVVGRVCEVG-EMLKRFETEGFVPTAM 527

Query: 383 TTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKINDPNL--LRRM 440
           T  SII  F + G +G+A  +++++           Y + I  Y K    D  L  L  +
Sbjct: 528 TYNSIINGFIKAGMMGSAFAVYQQMCAKGIPPNIVTYTSFIDGYCKTSCCDLALKMLNDV 587

Query: 441 ILGGARPDAETYSLL 455
              G RPD   Y+ L
Sbjct: 588 RCKGLRPDIAAYNSL 602


>gi|359479250|ref|XP_002275790.2| PREDICTED: pentatricopeptide repeat-containing protein
           At5g01110-like [Vitis vinifera]
          Length = 746

 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 82/369 (22%), Positives = 155/369 (42%), Gaps = 14/369 (3%)

Query: 92  YQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPN 151
           + + + YN L+ A   +G+++ + E M  M   G       +N +I      G+      
Sbjct: 286 FPDVVTYNTLINAYCRQGLLEEAFELMDSMSGKGLKPCVFTYNAIINGLCKTGKYLRAKG 345

Query: 152 ILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHA 211
           +L +M    ++P  +T++IL+     + N+    +++ +M    V P+ VS+  L    +
Sbjct: 346 VLDEMLKIGMSPDTATYNILLVECCRNDNMMDAERIFDEMPSQGVVPDLVSFSALIGLLS 405

Query: 212 VARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPN---VR 268
                  A  Y   ++ +  G     +   I++ G+   G   E +    + L     + 
Sbjct: 406 KNGCLDQALKYFRDMKNA--GLAPDNVIYTILIGGFCRNGVMSEALKVRDEMLEQGCVLD 463

Query: 269 SKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLK 328
             +Y   +    +   +S A+EL+ EM           + ++I+ Y K+G ++KA  L +
Sbjct: 464 VVTYNTILNGLCKEKMLSEADELFTEMTERGVFPDFYTFTTLINGYSKDGNMNKAVTLFE 523

Query: 329 EMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSII 388
            M     KP+ +TY  L  G  K + +E   K  EL   +I+    R   P   +   +I
Sbjct: 524 MMIQRNLKPDVVTYNTLIDGFCKGSEME---KVNELWNDMIS----RRIYPNHISYGILI 576

Query: 389 EIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKA--KINDPNLLRRMILGGAR 446
             +   G V  A  L++E+ +  +       NT++K Y +A   +     L  M+L G  
Sbjct: 577 NGYCNMGCVSEAFRLWDEMVEKGFEATIITCNTIVKGYCRAGNAVKADEFLSNMLLKGIV 636

Query: 447 PDAETYSLL 455
           PD  TY+ L
Sbjct: 637 PDGITYNTL 645



 Score = 62.8 bits (151), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 77/361 (21%), Positives = 147/361 (40%), Gaps = 50/361 (13%)

Query: 118 MKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEAN 177
           + +M  +G S     +N L++             I  +M +  V P + +F  L+ + + 
Sbjct: 347 LDEMLKIGMSPDTATYNILLVECCRNDNMMDAERIFDEMPSQGVVPDLVSFSALIGLLSK 406

Query: 178 DHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVA-ETYVEALEKSMTGNNWS 236
           +  ++  +K + DMK + + P+ V Y IL        + + A +   E LE+        
Sbjct: 407 NGCLDQALKYFRDMKNAGLAPDNVIYTILIGGFCRNGVMSEALKVRDEMLEQG------C 460

Query: 237 TLDVLIILYGYLAKGKDLERIWATVQELPNVRSK--------SYVLAIEAFGRIAQVSRA 288
            LDV  + Y  +  G   E++ +   EL    ++        ++   I  + +   +++A
Sbjct: 461 VLDV--VTYNTILNGLCKEKMLSEADELFTEMTERGVFPDFYTFTTLINGYSKDGNMNKA 518

Query: 289 EELWLEMQSVKQLKA-TEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYR---- 343
             L+ EM   + LK     YN++I  +CK   ++K + L  +M      PN I+Y     
Sbjct: 519 VTLF-EMMIQRNLKPDVVTYNTLIDGFCKGSEMEKVNELWNDMISRRIYPNHISYGILIN 577

Query: 344 -HLALGCFK------SNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGD 396
            +  +GC          +VE+GF+A      +IT               +I++ +   G+
Sbjct: 578 GYCNMGCVSEAFRLWDEMVEKGFEA-----TIITCN-------------TIVKGYCRAGN 619

Query: 397 VGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKINDP--NLLRRMILGGARPDAETYSL 454
              A+     +           YNTLI  ++K +  D    L+ +M   G  PD  TY++
Sbjct: 620 AVKADEFLSNMLLKGIVPDGITYNTLINGFIKEENMDRAFALVNKMENSGLLPDVITYNV 679

Query: 455 L 455
           +
Sbjct: 680 I 680



 Score = 62.8 bits (151), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 74/364 (20%), Positives = 152/364 (41%), Gaps = 18/364 (4%)

Query: 99  NNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKA 158
           N+L+   +  G + L+ E  +++   G  ++    N +I       + +   + L  M+ 
Sbjct: 223 NSLLGGLVKVGWVDLAWEIYQEVVRSGVQVNVYTLNIMINALCKNQKIENTKSFLSDMEE 282

Query: 159 DKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTV 218
             V P V T++ L+        +E   ++   M    ++P   +Y  +         Y  
Sbjct: 283 KGVFPDVVTYNTLINAYCRQGLLEEAFELMDSMSGKGLKPCVFTYNAIINGLCKTGKYLR 342

Query: 219 AETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQE---LPNVRSKSYVLA 275
           A+  ++ + K     + +T ++L++         D ERI+  +     +P++ S S ++ 
Sbjct: 343 AKGVLDEMLKIGMSPDTATYNILLVECCRNDNMMDAERIFDEMPSQGVVPDLVSFSALIG 402

Query: 276 IEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGC 335
           +    +   + +A + + +M++         Y  +I  +C+NG + +A  +  EM   GC
Sbjct: 403 L--LSKNGCLDQALKYFRDMKNAGLAPDNVIYTILIGGFCRNGVMSEALKVRDEMLEQGC 460

Query: 336 KPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKG 395
             + +TY  +  G  K  ++ E         +L T    R   P   T  ++I  +++ G
Sbjct: 461 VLDVVTYNTILNGLCKEKMLSEA-------DELFTEMTERGVFPDFYTFTTLINGYSKDG 513

Query: 396 DVGNAENLFEELKKANYTKYTFVYNTLIKAYVKA----KINDPNLLRRMILGGARPDAET 451
           ++  A  LFE + + N       YNTLI  + K     K+N+  L   MI     P+  +
Sbjct: 514 NMNKAVTLFEMMIQRNLKPDVVTYNTLIDGFCKGSEMEKVNE--LWNDMISRRIYPNHIS 571

Query: 452 YSLL 455
           Y +L
Sbjct: 572 YGIL 575



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 79/375 (21%), Positives = 154/375 (41%), Gaps = 18/375 (4%)

Query: 60  PKELDYSYLLEFTIKNHGISQGEKLFCCIP-KDYQNELLYNNLVIACLDK-GVIKLSLEY 117
           P    Y+ LL    +N  +   E++F  +P +    +L+  + +I  L K G +  +L+Y
Sbjct: 357 PDTATYNILLVECCRNDNMMDAERIFDEMPSQGVVPDLVSFSALIGLLSKNGCLDQALKY 416

Query: 118 MKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEAN 177
            + M+  G +   +++  LI      G       +  +M        V T++ ++     
Sbjct: 417 FRDMKNAGLAPDNVIYTILIGGFCRNGVMSEALKVRDEMLEQGCVLDVVTYNTILNGLCK 476

Query: 178 DHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWST 237
           +  +    +++++M    V P+  ++  L   ++       A T  E + +     +  T
Sbjct: 477 EKMLSEADELFTEMTERGVFPDFYTFTTLINGYSKDGNMNKAVTLFEMMIQRNLKPDVVT 536

Query: 238 LDVLIILYGYLAKGKDLERIWATVQELPNVR----SKSYVLAIEAFGRIAQVSRAEELWL 293
            + LI  +    KG ++E++     ++ + R      SY + I  +  +  VS A  LW 
Sbjct: 537 YNTLIDGF---CKGSEMEKVNELWNDMISRRIYPNHISYGILINGYCNMGCVSEAFRLWD 593

Query: 294 EMQSVKQLKATE-QYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKS 352
           EM   K  +AT    N+++  YC+ G   KA   L  M + G  P+ ITY  L  G  K 
Sbjct: 594 EMVE-KGFEATIITCNTIVKGYCRAGNAVKADEFLSNMLLKGIVPDGITYNTLINGFIKE 652

Query: 353 NLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANY 412
             ++  F        L+   +     P + T   I+  F+ +G +  AE +  ++ +   
Sbjct: 653 ENMDRAF-------ALVNKMENSGLLPDVITYNVILNGFSRQGRMQEAELIMLKMIERGV 705

Query: 413 TKYTFVYNTLIKAYV 427
                 Y +LI  +V
Sbjct: 706 NPDRSTYTSLINGHV 720



 Score = 48.5 bits (114), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 57/271 (21%), Positives = 109/271 (40%), Gaps = 13/271 (4%)

Query: 98  YNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMK 157
           YN ++     + ++  + E   +M   G    +  F  LI   S  G       +   M 
Sbjct: 467 YNTILNGLCKEKMLSEADELFTEMTERGVFPDFYTFTTLINGYSKDGNMNKAVTLFEMMI 526

Query: 158 ADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYT 217
              + P V T++ L+        +E + ++++DM    + PN +SY IL   +    +  
Sbjct: 527 QRNLKPDVVTYNTLIDGFCKGSEMEKVNELWNDMISRRIYPNHISYGILINGYC--NMGC 584

Query: 218 VAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSK------- 270
           V+E +    E    G   + +    I+ GY   G  ++      + L N+  K       
Sbjct: 585 VSEAFRLWDEMVEKGFEATIITCNTIVKGYCRAGNAVK----ADEFLSNMLLKGIVPDGI 640

Query: 271 SYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEM 330
           +Y   I  F +   + RA  L  +M++   L     YN +++ + + G + +A  ++ +M
Sbjct: 641 TYNTLINGFIKEENMDRAFALVNKMENSGLLPDVITYNVILNGFSRQGRMQEAELIMLKM 700

Query: 331 SMNGCKPNAITYRHLALGCFKSNLVEEGFKA 361
              G  P+  TY  L  G    N ++E F+ 
Sbjct: 701 IERGVNPDRSTYTSLINGHVTQNNLKEAFRV 731


>gi|356499433|ref|XP_003518545.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g06920-like [Glycine max]
          Length = 905

 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 93/414 (22%), Positives = 176/414 (42%), Gaps = 64/414 (15%)

Query: 87  CIPKDYQNELLYNNLVIACLD-KGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGR 145
           CIP      ++  N ++ CL  KG ++ +L  ++ M+ +  + +   +N LI +    G 
Sbjct: 373 CIP-----SVIAYNCILTCLGRKGKVEEALRILEAMK-MDAAPNLTSYNILIDMLCKAGE 426

Query: 146 RKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCI 205
            +    +   MK   + P++ T +I++        ++    ++  +      P+ V++C 
Sbjct: 427 LEAALKVQDSMKEAGLFPNIITVNIMIDRLCKAQRLDEACSIFLGLDHKVCTPDSVTFCS 486

Query: 206 LATAHAVARLYTVAETYV---EALEKSMTGNN--WSTL---------------------- 238
           L     + R   V + Y+   + L+   T N   +++L                      
Sbjct: 487 LI--DGLGRHGKVNDAYMLYEKMLDSGQTPNAVVYTSLIRNFFKCGRKEDGHKIYKEMMH 544

Query: 239 ----DVLIILYGYLA---KGKDLERIWATVQEL------PNVRSKSYVLAIEAFGRIAQV 285
                 L++L  Y+    K  ++E+  A  +E+      P+VRS  Y + I    +    
Sbjct: 545 RGCSPDLMLLNNYMDCVFKAGEIEKGRALFEEIKAQGLTPDVRS--YSILIHGLVKGGFS 602

Query: 286 SRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHL 345
               +L+ EM+       T  YN VI  +CK+G ++KA  LL+EM   G +P  +TY  +
Sbjct: 603 KDTYKLFYEMKEQGLHLDTRAYNIVIDGFCKSGKVNKAYQLLEEMKTKGLQPTVVTYGSV 662

Query: 346 ALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTL--SIIEIFAEKGDVGNAENL 403
             G  K + ++E +   E         + +S    L   +  S+I+ F + G +  A  +
Sbjct: 663 IDGLAKIDRLDEAYMLFE---------EAKSKAVDLNVVVYSSLIDGFGKVGRIDEAYLI 713

Query: 404 FEELKKANYTKYTFVYNTLIKAYVKAKINDPNLL--RRMILGGARPDAETYSLL 455
            EEL +   T  T+ +N L+ A VKA+  D  L+  + M      P+  TYS++
Sbjct: 714 LEELMQKGLTPNTYTWNCLLDALVKAEEIDEALVCFQNMKNLKCPPNEVTYSIM 767



 Score = 51.6 bits (122), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 57/284 (20%), Positives = 113/284 (39%), Gaps = 15/284 (5%)

Query: 151 NILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAH 210
            ++  M+  K  P  S +  L+   +  H  + ++ +   M+    E     +  L    
Sbjct: 188 GVIETMRKFKFRPAYSAYTTLIGALSAAHEADPMLTLLRQMQEIGYEVTVHLFTTLICVF 247

Query: 211 AVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNV--- 267
           A       A + ++ ++ +    +    +V I  +G + K   ++  W    EL +    
Sbjct: 248 AREGRVDAALSLLDEMKSNSFNADLVLYNVCIDCFGKVGK---VDMAWKFFHELKSQGLV 304

Query: 268 -RSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGL 326
               ++   I    +  +V  A EL+ E+ S K +     YN++I  Y   G  ++A  L
Sbjct: 305 PDDVTFTSMIGVLCKAERVDEAVELFEELDSNKSVPCVYAYNTMIMGYGSVGKFNEAYSL 364

Query: 327 LKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLS 386
           L+     GC P+ I Y  +     +   VEE  + LE  MK+        + P L +   
Sbjct: 365 LERQKRKGCIPSVIAYNCILTCLGRKGKVEEALRILE-AMKM-------DAAPNLTSYNI 416

Query: 387 IIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAK 430
           +I++  + G++  A  + + +K+A         N +I    KA+
Sbjct: 417 LIDMLCKAGELEAALKVQDSMKEAGLFPNIITVNIMIDRLCKAQ 460



 Score = 50.8 bits (120), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 73/365 (20%), Positives = 141/365 (38%), Gaps = 38/365 (10%)

Query: 118 MKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEAN 177
           ++ MR      +Y  +  LI   S+      +  +LRQM+       V  F  L+ + A 
Sbjct: 190 IETMRKFKFRPAYSAYTTLIGALSAAHEADPMLTLLRQMQEIGYEVTVHLFTTLICVFAR 249

Query: 178 DHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWST 237
           +  ++  + +  +MK +    + V Y +            +A  +   L+      +  T
Sbjct: 250 EGRVDAALSLLDEMKSNSFNADLVLYNVCIDCFGKVGKVDMAWKFFHELKSQGLVPDDVT 309

Query: 238 LDVLIILYGYLAKGKDLERIWATVQELPNVRSKSYVLA----IEAFGRIAQVSRAEELWL 293
              +I   G L K + ++      +EL + +S   V A    I  +G + + + A  L  
Sbjct: 310 FTSMI---GVLCKAERVDEAVELFEELDSNKSVPCVYAYNTMIMGYGSVGKFNEAYSLLE 366

Query: 294 EMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHL-ALGCFKS 352
             +    + +   YN +++   + G +++A  +L+ M M+   PN  +Y  L  + C   
Sbjct: 367 RQKRKGCIPSVIAYNCILTCLGRKGKVEEALRILEAMKMDA-APNLTSYNILIDMLCKAG 425

Query: 353 NL-----VEEGFKALELGMKLITTKKV----------------------RSSTPWLETTL 385
            L     V++  K   L   +IT   +                      +  TP   T  
Sbjct: 426 ELEAALKVQDSMKEAGLFPNIITVNIMIDRLCKAQRLDEACSIFLGLDHKVCTPDSVTFC 485

Query: 386 SIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKA--KINDPNLLRRMILG 443
           S+I+     G V +A  L+E++  +  T    VY +LI+ + K   K +   + + M+  
Sbjct: 486 SLIDGLGRHGKVNDAYMLYEKMLDSGQTPNAVVYTSLIRNFFKCGRKEDGHKIYKEMMHR 545

Query: 444 GARPD 448
           G  PD
Sbjct: 546 GCSPD 550



 Score = 48.9 bits (115), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 78/363 (21%), Positives = 140/363 (38%), Gaps = 59/363 (16%)

Query: 112 KLSLEYM--KKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFH 169
           K++  YM  +KM   G + + +V+  LI      GR++    I ++M     +P +   +
Sbjct: 496 KVNDAYMLYEKMLDSGQTPNAVVYTSLIRNFFKCGRKEDGHKIYKEMMHRGCSPDLMLLN 555

Query: 170 ILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKS 229
             M        IE    ++ ++K   + P+  SY IL   H + +     +TY    E  
Sbjct: 556 NYMDCVFKAGEIEKGRALFEEIKAQGLTPDVRSYSILI--HGLVKGGFSKDTYKLFYEMK 613

Query: 230 MTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRI----AQV 285
             G +  T    I++ G+   GK    +    Q L  +++K     +  +G +    A++
Sbjct: 614 EQGLHLDTRAYNIVIDGFCKSGK----VNKAYQLLEEMKTKGLQPTVVTYGSVIDGLAKI 669

Query: 286 SRAEELWLEMQSVKQLKATE----QYNSVISVYCKNGFIDKASGLLKEMSMNG------- 334
            R +E ++  +  K  KA +     Y+S+I  + K G ID+A  +L+E+   G       
Sbjct: 670 DRLDEAYMLFEEAKS-KAVDLNVVVYSSLIDGFGKVGRIDEAYLILEELMQKGLTPNTYT 728

Query: 335 ----------------------------CKPNAITYRHLALGCFKSNLVEEGFKALELGM 366
                                       C PN +TY  +  G  K     + F   +   
Sbjct: 729 WNCLLDALVKAEEIDEALVCFQNMKNLKCPPNEVTYSIMVNGLCKVRKFNKAFVFWQEMQ 788

Query: 367 KLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAY 426
           K       +   P   T  ++I   A  G+V  A++LFE  K +     +  YN +I+  
Sbjct: 789 K-------QGLKPNTITYTTMISGLARVGNVLEAKDLFERFKSSGGIPDSACYNAMIEGL 841

Query: 427 VKA 429
             A
Sbjct: 842 SNA 844



 Score = 42.7 bits (99), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 56/235 (23%), Positives = 92/235 (39%), Gaps = 38/235 (16%)

Query: 251 GKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEEL--WLEMQSVKQLKATEQYN 308
           G  LE    T  E+P        L +    R+  V  A     W+E ++ KQL + E YN
Sbjct: 83  GAALEDALNTFDEMPQPE-----LVVGVIRRLKDVRVALHYFRWVERKT-KQLHSPEAYN 136

Query: 309 SVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKL 368
           +++ +  +   ++    +L+EMSM G  P+  T   +     KS  + E F  +E   K 
Sbjct: 137 ALLMLMARTRNLEYLEQILEEMSMAGFGPSNNTCIEMVASFVKSRKLREAFGVIETMRKF 196

Query: 369 --------ITT-----KKVRSSTPWL-----------ETTL----SIIEIFAEKGDVGNA 400
                    TT          + P L           E T+    ++I +FA +G V  A
Sbjct: 197 KFRPAYSAYTTLIGALSAAHEADPMLTLLRQMQEIGYEVTVHLFTTLICVFAREGRVDAA 256

Query: 401 ENLFEELKKANYTKYTFVYNTLIKAYVKAKINDP--NLLRRMILGGARPDAETYS 453
            +L +E+K  ++     +YN  I  + K    D        +   G  PD  T++
Sbjct: 257 LSLLDEMKSNSFNADLVLYNVCIDCFGKVGKVDMAWKFFHELKSQGLVPDDVTFT 311


>gi|297839237|ref|XP_002887500.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297333341|gb|EFH63759.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 989

 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 74/344 (21%), Positives = 146/344 (42%), Gaps = 26/344 (7%)

Query: 98  YNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMK 157
           +N L+      G +  +     +M   G  I  + FN +I    + G      ++L++M+
Sbjct: 305 FNTLIDLYGKAGRLNDAANLFSEMLKSGVPIDTVTFNTMIHTCGTHGHLSEAESLLKKME 364

Query: 158 ADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYT 217
              ++P   T++IL+ + A+  +IE  +K Y ++++  + P+ V++   A  H + +   
Sbjct: 365 EKGISPDTKTYNILLSLHADAGDIEAALKYYRNIRKVGLFPDTVTH--RAVLHILCQRKM 422

Query: 218 VAETYVEALEKSMTGNNWSTLD--VLIILYGYLAKGKDLERIWATVQELPNVRSKSYVLA 275
           VAE   EA+   M  N+    +  V +I+  Y+ +G     +    + L        VL+
Sbjct: 423 VAE--AEAVMAEMDRNSIRIDEHSVPVIMQMYVNEG-----LVGQAKALFERFQLDCVLS 475

Query: 276 IEAFGRIAQVSRAEELWLEMQSV--------KQLKATEQYNSVISVYCKNGFIDKASGLL 327
                 +  V   + LW+E ++V         Q     +YN +I  Y K    +KA  + 
Sbjct: 476 STTLAAVMDVYAEKGLWVEAETVFYGKRNMTGQRNDVLEYNVMIKAYGKAKLHEKALSIF 535

Query: 328 KEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSI 387
           K M   G  P+  TY  L       +LV++         +++         P  +T  ++
Sbjct: 536 KGMKNQGTWPDECTYNSLIQMLAGVDLVDD-------AQRILAEMLDSGCKPGCKTYAAL 588

Query: 388 IEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKI 431
           I  +   G + +A +L+E +KK        VY +LI  + ++ +
Sbjct: 589 IASYVRLGLLSDAVDLYEAMKKTGVKPNEVVYGSLINGFAESGM 632



 Score = 49.3 bits (116), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 56/265 (21%), Positives = 120/265 (45%), Gaps = 8/265 (3%)

Query: 93  QNELLYNNLVIACLDKGVI-KLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPN 151
           +N++L  N++I    K  + + +L   K M+  G       +N LI + +          
Sbjct: 509 RNDVLEYNVMIKAYGKAKLHEKALSIFKGMKNQGTWPDECTYNSLIQMLAGVDLVDDAQR 568

Query: 152 ILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHA 211
           IL +M      P   T+  L+        +   + +Y  MK++ V+PNEV Y  L    A
Sbjct: 569 ILAEMLDSGCKPGCKTYAALIASYVRLGLLSDAVDLYEAMKKTGVKPNEVVYGSLINGFA 628

Query: 212 VARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQEL---PNVR 268
            + +   A  Y + +E+    +N   L  LI  Y  +   ++  R++  +++    P+V 
Sbjct: 629 ESGMVEEAIQYFKLMEEHGVQSNHIVLTSLIKAYSKVGCLEEARRVYDKMKDSGGGPDVA 688

Query: 269 SKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLK 328
           + + +L++ A   +  VS AE ++ +++  K       + +++ +Y   G +D+A  + +
Sbjct: 689 ASNSMLSLCA--DLGIVSEAESIFNDLRE-KGTCDVISFATMMYLYKGMGMLDEAIEVAE 745

Query: 329 EMSMNGCKPNAITYRHLALGCFKSN 353
           EM  +G   +  ++  + L C+ ++
Sbjct: 746 EMRESGLLRDCTSFNQV-LACYAAD 769


>gi|302804526|ref|XP_002984015.1| hypothetical protein SELMODRAFT_445726 [Selaginella moellendorffii]
 gi|300148367|gb|EFJ15027.1| hypothetical protein SELMODRAFT_445726 [Selaginella moellendorffii]
          Length = 310

 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 65/226 (28%), Positives = 108/226 (47%), Gaps = 17/226 (7%)

Query: 220 ETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATV-QELPNVRSKSYVLAIEA 278
           E    A    ++  N   L  L+ ++GYL     +  IW+ V Q  P +   SY  AI+A
Sbjct: 92  EALAAAKSVDLSTANERDLANLMEIHGYLHDPDSVGAIWSIVKQRSPRLLHDSYAAAIKA 151

Query: 279 FGRIAQVSRAEELWLEMQSVKQLK-ATEQYNSVISVYCKNGFIDKASGLLKEMSMNGC-K 336
           FG + +V +AE +  E  + K ++     Y+ +I VY + G +D+A   L+  + N   +
Sbjct: 152 FGLVGEVEKAEVVLEETIASKSVRYGINPYHGIIEVYARVGLLDRAEETLRRKTDNSVFQ 211

Query: 337 PNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGD 396
           P    +  L LG    N +    + LE G +    +++ SS  +L TT+ ++ +FA + D
Sbjct: 212 P----FNSLILGYLARNDIARALQLLEEGWE---KRQIDSSLGYL-TTIKLLRVFAARRD 263

Query: 397 VGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKINDPN--LLRRM 440
           VG+AE L    +  N    T   N ++  Y  A+   PN  LLR +
Sbjct: 264 VGSAEKLIAMYR--NRGDSTLC-NAIVNVYAAAQ-QPPNFQLLRTL 305


>gi|293334951|ref|NP_001170632.1| uncharacterized protein LOC100384682 [Zea mays]
 gi|238006488|gb|ACR34279.1| unknown [Zea mays]
 gi|413925463|gb|AFW65395.1| hypothetical protein ZEAMMB73_565010 [Zea mays]
          Length = 462

 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 72/297 (24%), Positives = 131/297 (44%), Gaps = 12/297 (4%)

Query: 163 PHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVA-ET 221
           P V T++ L+        ++  + V   M+ + V P+ V+Y  L T    + L   A + 
Sbjct: 45  PDVVTYNTLLAAYCRVDGLDAGLAVVHRMREAGVRPDAVTYNSLITGADRSGLTVRALDL 104

Query: 222 YVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVR-SKSYVLAIEAFG 280
           + E L   +  ++WS   ++  L+      +   R++A + +      + +Y   ++   
Sbjct: 105 FDEMLRSGVAPDSWSYNALMHCLF-RSGHPEHAYRVFADMADRGVAPCATTYNTLLDGLL 163

Query: 281 RIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAI 340
           +   V+ A  ++  +Q          YN++I+  CK+G +  A  +LKE+      PNA+
Sbjct: 164 KAGHVTNAFRMFRYLQRAGLPVGIVTYNTMINGLCKSGKVGYARMVLKELGRTEHAPNAV 223

Query: 341 TYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNA 400
           TY  +   CF+    E+G   LE  + L+    +  + P+     ++I    +KG +  A
Sbjct: 224 TYTTVMKCCFRYGRFEQG---LETFLSLLEGGYISDAFPY----TTVISALVKKGRMQEA 276

Query: 401 ENLFEELKKANYTKYTFVYNTLIKAYVK-AKINDP-NLLRRMILGGARPDAETYSLL 455
               E + ++  T     YNTLI    +  KIND   LL  M  GG   D  T+S+L
Sbjct: 277 NTYCELMIQSGSTLDNACYNTLIHLRCQEGKINDAFELLNMMEEGGLESDEYTFSIL 333



 Score = 38.1 bits (87), Expect = 9.7,   Method: Compositional matrix adjust.
 Identities = 55/296 (18%), Positives = 114/296 (38%), Gaps = 6/296 (2%)

Query: 41  LNKRALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQGEKLFCCIPKD--YQNELLY 98
           L  RAL++ + ++R     P    Y+ L+    ++       ++F  +           Y
Sbjct: 97  LTVRALDLFDEMLRS-GVAPDSWSYNALMHCLFRSGHPEHAYRVFADMADRGVAPCATTY 155

Query: 99  NNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKA 158
           N L+   L  G +  +    + ++  G  +  + +N +I      G+      +L+++  
Sbjct: 156 NTLLDGLLKAGHVTNAFRMFRYLQRAGLPVGIVTYNTMINGLCKSGKVGYARMVLKELGR 215

Query: 159 DKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTV 218
            + AP+  T+  +MK        E  ++ +  +       +   Y  + +A         
Sbjct: 216 TEHAPNAVTYTTVMKCCFRYGRFEQGLETFLSLLEGGYISDAFPYTTVISALVKKGRMQE 275

Query: 219 AETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSKSYVLAIEA 278
           A TY E + +S +  + +  + LI L     K  D   +   ++E   + S  Y  +I  
Sbjct: 276 ANTYCELMIQSGSTLDNACYNTLIHLRCQEGKINDAFELLNMMEE-GGLESDEYTFSILV 334

Query: 279 FG--RIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSM 332
            G  ++ Q+  AE+    M+ +        YN +I   CK   +D A  +L  M +
Sbjct: 335 NGLCKMGQIEAAEKQIWSMEMMGMQSNVVAYNCLIDALCKCHEVDAAIKILHSMKL 390


>gi|255549482|ref|XP_002515794.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223545122|gb|EEF46633.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 924

 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 72/308 (23%), Positives = 132/308 (42%), Gaps = 12/308 (3%)

Query: 96  LLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQ 155
           +LYNN++ A    G +  ++  +K+M+   H  +   F  +I   +  G  K   ++   
Sbjct: 552 VLYNNIIRAFCGMGTMDRAICMVKEMQKERHRPTSRTFMPIIHGFARAGEMKRALDVFDM 611

Query: 156 MKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARL 215
           M+     P V TF+ L+        +E  +++  +M  + V PNE +Y  +   +A    
Sbjct: 612 MRRSGCIPTVHTFNALILGLVEKRQMEKAIEILDEMALAGVSPNEHTYTTIMHGYAALGD 671

Query: 216 YTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELP--NVRSKSYV 273
              A  Y   L       +  T + L+       K   ++   A  +E+   N+   ++V
Sbjct: 672 TGKAFEYFTKLRDEGLQLDVYTYEALL---KACCKSGRMQSALAVTKEMSAQNIPRNTFV 728

Query: 274 --LAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMS 331
             + I+ + R   V  A +L  +M+          Y S I+  CK G + +AS +++EM 
Sbjct: 729 YNILIDGWARRGDVWEAADLMQQMKQGGVKPDIHTYTSFINACCKAGDMLRASKMMEEME 788

Query: 332 MNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTL----SI 387
            +G KPN  TY  L  G  +++L E+  +  +  MKL   K  ++    L T L    ++
Sbjct: 789 TSGVKPNVKTYTTLIHGWARASLPEKALRCFQ-EMKLAGLKPDKAVYHCLMTALLSRATV 847

Query: 388 IEIFAEKG 395
            E +   G
Sbjct: 848 TEAYVRPG 855



 Score = 68.9 bits (167), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 66/282 (23%), Positives = 123/282 (43%), Gaps = 14/282 (4%)

Query: 152 ILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHA 211
           ++R+M+ + +   +  +H +M       N E  + V+  +K     P+ VSY  L   +A
Sbjct: 433 LVREMEGEGIDAPIDIYHTMMDGYTMVGNEEKCLTVFERLKECGFAPSVVSYGCLINLYA 492

Query: 212 VARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSKS 271
                + A    + +E +   +N  T  +LI   G+L K KD    +A  +++     K 
Sbjct: 493 KVGKISKALEVSKMMESAGIKHNMKTYSMLI--NGFL-KLKDWANAFAIFEDVVKDGLKP 549

Query: 272 YVL----AIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLL 327
            V+     I AF  +  + RA  +  EMQ  +    +  +  +I  + + G + +A  + 
Sbjct: 550 DVVLYNNIIRAFCGMGTMDRAICMVKEMQKERHRPTSRTFMPIIHGFARAGEMKRALDVF 609

Query: 328 KEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSI 387
             M  +GC P   T+  L LG     LVE+  + +E  ++++    +   +P   T  +I
Sbjct: 610 DMMRRSGCIPTVHTFNALILG-----LVEK--RQMEKAIEILDEMALAGVSPNEHTYTTI 662

Query: 388 IEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKA 429
           +  +A  GD G A   F +L+        + Y  L+KA  K+
Sbjct: 663 MHGYAALGDTGKAFEYFTKLRDEGLQLDVYTYEALLKACCKS 704



 Score = 49.3 bits (116), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 66/344 (19%), Positives = 132/344 (38%), Gaps = 51/344 (14%)

Query: 153 LRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCIL------ 206
              M+A  + P    +  L+   A   ++E  +     MK   VE + V+Y I+      
Sbjct: 329 FESMRARGIEPTSHVYTSLIHAYAVGRDMEEALSCARKMKEEGVEMSLVTYSIIVGGFAK 388

Query: 207 -ATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELP 265
              A A  R +  A+     +   + GN         ++Y Y  +  ++++  A V+E+ 
Sbjct: 389 IGNADAADRWFKEAKDRHSHMNAIIYGN---------MIYAY-CQTCNMDQAEALVREME 438

Query: 266 ----NVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFID 321
               +     Y   ++ +  +    +   ++  ++      +   Y  +I++Y K G I 
Sbjct: 439 GEGIDAPIDIYHTMMDGYTMVGNEEKCLTVFERLKECGFAPSVVSYGCLINLYAKVGKIS 498

Query: 322 KASGLLKEMSMNGCKPNAITYRHLALGCFK-----------SNLVEEGFK---------- 360
           KA  + K M   G K N  TY  L  G  K            ++V++G K          
Sbjct: 499 KALEVSKMMESAGIKHNMKTYSMLINGFLKLKDWANAFAIFEDVVKDGLKPDVVLYNNII 558

Query: 361 -------ALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYT 413
                   ++  + ++   +     P   T + II  FA  G++  A ++F+ ++++   
Sbjct: 559 RAFCGMGTMDRAICMVKEMQKERHRPTSRTFMPIIHGFARAGEMKRALDVFDMMRRSGCI 618

Query: 414 KYTFVYNTLIKAYVKAKINDP--NLLRRMILGGARPDAETYSLL 455
                +N LI   V+ +  +    +L  M L G  P+  TY+ +
Sbjct: 619 PTVHTFNALILGLVEKRQMEKAIEILDEMALAGVSPNEHTYTTI 662


>gi|449523421|ref|XP_004168722.1| PREDICTED: pentatricopeptide repeat-containing protein At2g15630,
           mitochondrial-like [Cucumis sativus]
          Length = 628

 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 89/394 (22%), Positives = 157/394 (39%), Gaps = 41/394 (10%)

Query: 98  YNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMK 157
           +N ++     +G +K + +++  M   G   + + +N ++    S GR +    IL  MK
Sbjct: 224 FNIMINVLCKEGKLKKAKDFVGHMETSGVKPNIVTYNTIVHGYCSSGRVEAADAILTTMK 283

Query: 158 ADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYT 217
             K+ P   T+  L+        +E   K++ +M +  + P+ V Y  L           
Sbjct: 284 RQKIEPDSFTYGSLISGMCKQGRLEEASKIFEEMVQKGLRPSAVIYNTLIDGFCNKGNLD 343

Query: 218 VAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQE---LPNVRSKSYVL 274
           +A  Y + + K       ST + LI       +  + E +   +QE    P+  + +Y +
Sbjct: 344 MASAYKDEMLKKGISPTMSTYNSLIHALFMEQRTDEAECMIKEIQEKGISPD--AITYNI 401

Query: 275 AIEAFGRIAQVSRAEELWLEM--QSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSM 332
            I  + R A   +A  L  EM    +K  K T  Y S++ V  K   + +A  L K+++ 
Sbjct: 402 LINGYCRCANAKKAFLLHDEMLASGIKPTKKT--YTSLLHVLSKKNRMKEADDLFKKITS 459

Query: 333 NGCKPNAITYRHLALG-CFKSNLVEEGFKAL----------------------------E 363
            G  P+AI +  L  G C  SN V+  F+ L                            E
Sbjct: 460 EGVLPDAIMFNALIDGHCSNSN-VKGAFELLKDMDRMKVPPDEVTFNTIMQGHCREGKVE 518

Query: 364 LGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLI 423
              +L    K R   P   +  ++I  ++ +GD+ +A  +  E+    +      YN L+
Sbjct: 519 EARELFDEMKRRGIKPDHISFNTLISGYSRRGDIKDAFRVRNEMLDTGFNPTVLTYNALV 578

Query: 424 KAYVKAKIND--PNLLRRMILGGARPDAETYSLL 455
           +   K +  D    LL+ M+  G  PD  TY  L
Sbjct: 579 QGLCKNQEGDLAEELLKEMVSKGMTPDDTTYFTL 612



 Score = 63.2 bits (152), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 59/225 (26%), Positives = 104/225 (46%), Gaps = 21/225 (9%)

Query: 243 ILYGYLAKGK-DLER------IWATVQE---LPNVRSKSYVLAIEAFGRIAQVSRAEELW 292
           I++ YL K   D+ R       + T++E   LP + + + +L++  F ++ +   A  L+
Sbjct: 152 IVFDYLIKSCCDMNRADEAFECFYTMKEKGVLPTIETCNSLLSL--FLKLNRTEAAWVLY 209

Query: 293 LEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKS 352
            EM  ++   +   +N +I+V CK G + KA   +  M  +G KPN +TY  +  G   S
Sbjct: 210 AEMFRLRIKSSVYTFNIMINVLCKEGKLKKAKDFVGHMETSGVKPNIVTYNTIVHGYCSS 269

Query: 353 NLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANY 412
             VE           ++TT K +   P   T  S+I    ++G +  A  +FEE+ +   
Sbjct: 270 GRVEA-------ADAILTTMKRQKIEPDSFTYGSLISGMCKQGRLEEASKIFEEMVQKGL 322

Query: 413 TKYTFVYNTLIKAYV-KAKINDPNLLR-RMILGGARPDAETYSLL 455
                +YNTLI  +  K  ++  +  +  M+  G  P   TY+ L
Sbjct: 323 RPSAVIYNTLIDGFCNKGNLDMASAYKDEMLKKGISPTMSTYNSL 367



 Score = 56.6 bits (135), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 75/397 (18%), Positives = 157/397 (39%), Gaps = 51/397 (12%)

Query: 45  ALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQGEKLFC-CIPKDYQ-NELLYNNLV 102
           A + +   ++ +   P    Y  L+    K   + +  K+F   + K  + + ++YN L+
Sbjct: 274 AADAILTTMKRQKIEPDSFTYGSLISGMCKQGRLEEASKIFEEMVQKGLRPSAVIYNTLI 333

Query: 103 IACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVA 162
               +KG + ++  Y  +M   G S +   +N LI       R      ++++++   ++
Sbjct: 334 DGFCNKGNLDMASAYKDEMLKKGISPTMSTYNSLIHALFMEQRTDEAECMIKEIQEKGIS 393

Query: 163 PHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETY 222
           P   T++IL+       N +    ++ +M  S ++P + +Y  L   H +++   + E  
Sbjct: 394 PDAITYNILINGYCRCANAKKAFLLHDEMLASGIKPTKKTYTSLL--HVLSKKNRMKE-- 449

Query: 223 VEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRI 282
                                         DL +   +   LP+  +  +   I+     
Sbjct: 450 ----------------------------ADDLFKKITSEGVLPD--AIMFNALIDGHCSN 479

Query: 283 AQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITY 342
           + V  A EL  +M  +K       +N+++  +C+ G +++A  L  EM   G KP+ I++
Sbjct: 480 SNVKGAFELLKDMDRMKVPPDEVTFNTIMQGHCREGKVEEARELFDEMKRRGIKPDHISF 539

Query: 343 RHLALGCFKSNLVEEGFKA----LELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVG 398
             L  G  +   +++ F+     L+ G             P + T  ++++   +  +  
Sbjct: 540 NTLISGYSRRGDIKDAFRVRNEMLDTGF-----------NPTVLTYNALVQGLCKNQEGD 588

Query: 399 NAENLFEELKKANYTKYTFVYNTLIKAYVKAKINDPN 435
            AE L +E+     T     Y TLI+   K  I D N
Sbjct: 589 LAEELLKEMVSKGMTPDDTTYFTLIEGIAKVNIPDEN 625



 Score = 53.1 bits (126), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 76/377 (20%), Positives = 151/377 (40%), Gaps = 30/377 (7%)

Query: 92  YQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPN 151
           +++ ++++ L+ +C D      + E    M+  G   +    N L+ L     R +    
Sbjct: 148 FKSSIVFDYLIKSCCDMNRADEAFECFYTMKEKGVLPTIETCNSLLSLFLKLNRTEAAWV 207

Query: 152 ILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHA 211
           +  +M   ++   V TF+I++ +   +  ++        M+ S V+PN V+Y  +   + 
Sbjct: 208 LYAEMFRLRIKSSVYTFNIMINVLCKEGKLKKAKDFVGHMETSGVKPNIVTYNTIVHGYC 267

Query: 212 VARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQEL--PNVRS 269
            +     A+  +  +++     +  T   LI   G   +G+ LE      +E+    +R 
Sbjct: 268 SSGRVEAADAILTTMKRQKIEPDSFTYGSLI--SGMCKQGR-LEEASKIFEEMVQKGLRP 324

Query: 270 KS--YVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLL 327
            +  Y   I+ F     +  A     EM           YNS+I         D+A  ++
Sbjct: 325 SAVIYNTLIDGFCNKGNLDMASAYKDEMLKKGISPTMSTYNSLIHALFMEQRTDEAECMI 384

Query: 328 KEMSMNGCKPNAITYRHLALGCFKSNLVEEGF----KALELGMKLITTKKVRSSTPWLET 383
           KE+   G  P+AITY  L  G  +    ++ F    + L  G+K           P  +T
Sbjct: 385 KEIQEKGISPDAITYNILINGYCRCANAKKAFLLHDEMLASGIK-----------PTKKT 433

Query: 384 TLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAY-----VKAKINDPNLLR 438
             S++ + ++K  +  A++LF+++          ++N LI  +     VK       LL+
Sbjct: 434 YTSLLHVLSKKNRMKEADDLFKKITSEGVLPDAIMFNALIDGHCSNSNVKGAF---ELLK 490

Query: 439 RMILGGARPDAETYSLL 455
            M      PD  T++ +
Sbjct: 491 DMDRMKVPPDEVTFNTI 507


>gi|255553861|ref|XP_002517971.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223542953|gb|EEF44489.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 1029

 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 76/335 (22%), Positives = 141/335 (42%), Gaps = 14/335 (4%)

Query: 98  YNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMK 157
           YN L+      G +  + +    M   G ++  + FN +I    S G       +L +M+
Sbjct: 345 YNTLIDLYGKAGRLGDAADIFSDMMKSGVAMDTITFNTMIYTCGSHGHLSEAETLLNKME 404

Query: 158 ADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYT 217
              V+P   T++I + + A++ NI+  +K Y  ++   + P+ VS+  +        +  
Sbjct: 405 DRGVSPDTRTYNIFLSLYADEGNIDAAIKCYKKIREVGLLPDTVSHRAILHELCERNMVK 464

Query: 218 VAETYVEALEKSMTGNNWSTLDVLIILY---GYLAKGKDLERIWATVQELPNVRSKSYVL 274
            AE  +E +EKS    +  +L  L+ +Y   G   +  DL       Q    + +K+   
Sbjct: 465 EAEAIIEEIEKSSKQVDEHSLPGLVKMYINKGLFDRANDL---LNKCQFGGGLSAKTNAA 521

Query: 275 AIEAFGRIAQVSRAEELWLEMQS-VKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMN 333
            I+A+      + AE ++   +  V Q     +YN +I  Y K    +KA  L + M  +
Sbjct: 522 IIDAYAENGLWAEAEAVFYRKRDLVGQKTDILEYNVMIKAYGKGKLYEKAFTLFRSMRHH 581

Query: 334 GCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAE 393
           G  P+  TY  L      ++L+++          L+T  +     P   T  SII  +A 
Sbjct: 582 GTWPDECTYNSLIQMFSGADLMDQ-------ARDLLTEMQGVGFKPQCATFSSIIACYAR 634

Query: 394 KGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVK 428
            G + +A  +++E+ K        VY  +I  Y +
Sbjct: 635 LGQLSDAAGVYQEMVKVGVKPNEVVYGAIINGYAE 669



 Score = 56.6 bits (135), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 79/418 (18%), Positives = 165/418 (39%), Gaps = 25/418 (5%)

Query: 37  RKLQLNKRALEVMEWVIRERPYRPKEL-DYSYLLEFTIKNHGISQGEKLFCCIPKDYQNE 95
           RK  L  +  +++E+ +  + Y   +L + ++ L  ++++HG              + +E
Sbjct: 541 RKRDLVGQKTDILEYNVMIKAYGKGKLYEKAFTLFRSMRHHGT-------------WPDE 587

Query: 96  LLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQ 155
             YN+L+       ++  + + + +M+ +G       F+ +I   +  G+      + ++
Sbjct: 588 CTYNSLIQMFSGADLMDQARDLLTEMQGVGFKPQCATFSSIIACYARLGQLSDAAGVYQE 647

Query: 156 MKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARL 215
           M    V P+   +  ++   A + N++  +K +  M+   +  N++    L   ++    
Sbjct: 648 MVKVGVKPNEVVYGAIINGYAEEGNVKEALKYFHMMEEYGISANQIVLTSLIKVYSKLGC 707

Query: 216 YTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSKSYVLA 275
           +  A+   + +     G +    + +I LY  L    + E ++  ++E  +    SY   
Sbjct: 708 FDSAKQLYQKMMCLEGGPDIIASNSMISLYADLGMISEAELVFNNLREKGSADGVSYATM 767

Query: 276 IEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGC 335
           +  +  +  +  A ++  EM+    L+ +  YN V++ Y  NG + +   LL EM     
Sbjct: 768 MYLYKGMGMLDEAIDVAEEMKLSGLLRDSVSYNKVMTCYATNGQLLECGELLHEMIKKKL 827

Query: 336 KPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKG 395
            P+  T++ L     K  L  E    LE               P+    + I  +F+  G
Sbjct: 828 FPDGGTFKILFTVLKKGGLPTEAVMQLE--------SSYHEGKPYARQAV-ITSVFSLVG 878

Query: 396 DVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKINDP--NLLRRMILGGARPDAET 451
               A    +   KA+     F YN  I AY  +   D   N   +M   G  PD  T
Sbjct: 879 LHALAMESCKIFTKADIALDLFAYNVAIFAYGSSGEIDKALNTFMKMQDEGLEPDLVT 936



 Score = 54.7 bits (130), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 57/246 (23%), Positives = 97/246 (39%), Gaps = 59/246 (23%)

Query: 264 LPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKA 323
           +PNV    Y + + A GR  +       W+EM     L     Y  ++ VY K G + +A
Sbjct: 178 VPNV--IHYNIVLRALGRAQKWDDLRRCWIEMAKSGVLPTNNTYGMLVDVYGKAGLVTEA 235

Query: 324 SGLLKEMSMNGCKPNAIT--------------------YRHLALG--------------- 348
              +K M + G  P+ +T                    Y+   +G               
Sbjct: 236 LLWIKHMKLRGLFPDEVTMNTVVKVLKDAGEFDRAHSFYKDWCIGKIELDDLELNSMGDI 295

Query: 349 ---------CFKSNLVEEGFKALELGMKLITTKKVRSST-------PWLETTL-SIIEIF 391
                     FK  L  E FK   +G ++ T K V SS        P L +T  ++I+++
Sbjct: 296 EHGSGSGPVSFKHFLSTELFK---IGGRIRTPKIVGSSDAEKIVRKPRLTSTYNTLIDLY 352

Query: 392 AEKGDVGNAENLFEELKKANYTKYTFVYNTLI-KAYVKAKINDP-NLLRRMILGGARPDA 449
            + G +G+A ++F ++ K+     T  +NT+I        +++   LL +M   G  PD 
Sbjct: 353 GKAGRLGDAADIFSDMMKSGVAMDTITFNTMIYTCGSHGHLSEAETLLNKMEDRGVSPDT 412

Query: 450 ETYSLL 455
            TY++ 
Sbjct: 413 RTYNIF 418



 Score = 48.9 bits (115), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 67/372 (18%), Positives = 149/372 (40%), Gaps = 47/372 (12%)

Query: 94  NELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNIL 153
           + + +N ++  C   G +  +   + KM   G S     +N  + L +  G         
Sbjct: 376 DTITFNTMIYTCGSHGHLSEAETLLNKMEDRGVSPDTRTYNIFLSLYADEGNIDAAIKCY 435

Query: 154 RQMKADKVAP----HVSTFHILMK------------------IEANDHNIEGLMKVYSDM 191
           ++++   + P    H +  H L +                   + ++H++ GL+K+Y + 
Sbjct: 436 KKIREVGLLPDTVSHRAILHELCERNMVKEAEAIIEEIEKSSKQVDEHSLPGLVKMYINK 495

Query: 192 KRSEVEPNEVSYCILA------TAHAVARLYTVAETYVEA-----LEKSMTGNNWSTLDV 240
              +   + ++ C         T  A+   Y     + EA      ++ + G     L+ 
Sbjct: 496 GLFDRANDLLNKCQFGGGLSAKTNAAIIDAYAENGLWAEAEAVFYRKRDLVGQKTDILEY 555

Query: 241 LIILYGYLAKGKDLERIWATVQELPNVRS----KSYVLAIEAFGRIAQVSRAEELWLEMQ 296
            +++  Y  KGK  E+ +   + + +  +     +Y   I+ F     + +A +L  EMQ
Sbjct: 556 NVMIKAY-GKGKLYEKAFTLFRSMRHHGTWPDECTYNSLIQMFSGADLMDQARDLLTEMQ 614

Query: 297 SVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVE 356
            V        ++S+I+ Y + G +  A+G+ +EM   G KPN + Y  +  G  +   V+
Sbjct: 615 GVGFKPQCATFSSIIACYARLGQLSDAAGVYQEMVKVGVKPNEVVYGAIINGYAEEGNVK 674

Query: 357 EGFKALELGMKL-ITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKY 415
           E  K   +  +  I+  ++           S+I+++++ G   +A+ L++++        
Sbjct: 675 EALKYFHMMEEYGISANQI--------VLTSLIKVYSKLGCFDSAKQLYQKMMCLEGGPD 726

Query: 416 TFVYNTLIKAYV 427
               N++I  Y 
Sbjct: 727 IIASNSMISLYA 738



 Score = 40.8 bits (94), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 51/275 (18%), Positives = 116/275 (42%), Gaps = 41/275 (14%)

Query: 163 PHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETY 222
           P+V  ++I+++        + L + + +M +S V P   +Y +L   +  A L T A  +
Sbjct: 179 PNVIHYNIVLRALGRAQKWDDLRRCWIEMAKSGVLPTNNTYGMLVDVYGKAGLVTEALLW 238

Query: 223 VEALEKSMTGNNWSTLDVLIILY---GYLAKGKDLERIWATVQ-ELPNVRSKS------- 271
           ++ ++      +  T++ ++ +    G   +     + W   + EL ++   S       
Sbjct: 239 IKHMKLRGLFPDEVTMNTVVKVLKDAGEFDRAHSFYKDWCIGKIELDDLELNSMGDIEHG 298

Query: 272 ---------YVLAIEAF---GRI-----AQVSRAEELWLEMQSVKQLKATEQYNSVISVY 314
                    + L+ E F   GRI        S AE++      V++ + T  YN++I +Y
Sbjct: 299 SGSGPVSFKHFLSTELFKIGGRIRTPKIVGSSDAEKI------VRKPRLTSTYNTLIDLY 352

Query: 315 CKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKV 374
            K G +  A+ +  +M  +G   + IT+  +   C     + E          L+   + 
Sbjct: 353 GKAGRLGDAADIFSDMMKSGVAMDTITFNTMIYTCGSHGHLSE-------AETLLNKMED 405

Query: 375 RSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKK 409
           R  +P   T    + ++A++G++  A   ++++++
Sbjct: 406 RGVSPDTRTYNIFLSLYADEGNIDAAIKCYKKIRE 440


>gi|356518398|ref|XP_003527866.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09900-like [Glycine max]
          Length = 603

 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 76/367 (20%), Positives = 155/367 (42%), Gaps = 22/367 (5%)

Query: 98  YNNLVIACLDKGVIKLSLEYMKKM---RVLGHSISYLVFNRLIILNSSPGRRKTIPNILR 154
           YN ++ +  D G +K ++E + +          I+Y +       +S  G+      +L 
Sbjct: 212 YNTILRSLCDSGKLKEAMEVLDRQMQRECYPDVITYTILIEATCNDSGVGQAM---KLLD 268

Query: 155 QMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVAR 214
           +M+     P V T+++L+     +  ++  +K  ++M     +PN +++ I+  +     
Sbjct: 269 EMRKKGCKPDVVTYNVLINGICKEGRLDEAIKFLNNMPLYGCQPNVITHNIILRSMCSTG 328

Query: 215 LYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPN----VRSK 270
            +  AE  +  + +     +  T ++LI    +L + + L R    ++++P       S 
Sbjct: 329 RWMDAERLLADMLRKGCSPSVVTFNILI---NFLCRKRLLGRAIDVLEKMPKHGCMPNSL 385

Query: 271 SYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEM 330
           SY   +  F +  ++ RA E    M S         YN++++  CK+G  D A  +L ++
Sbjct: 386 SYNPLLHGFCQEKKMDRAIEYLEIMVSRGCYPDIVTYNTLLTALCKDGKADAAVEILNQL 445

Query: 331 SMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEI 390
           S  GC P  ITY  +  G  K    E   + LE         + +   P + T  +++  
Sbjct: 446 SSKGCSPVLITYNTVIDGLTKVGKTEYAAELLE-------EMRRKGLKPDIITYSTLLRG 498

Query: 391 FAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKINDP--NLLRRMILGGARPD 448
              +G V  A  +F +++  +       YN ++    KA+      + L  M+  G +P 
Sbjct: 499 LGCEGKVDEAIKIFHDMEGLSIKPSAVTYNAIMLGLCKAQQTSRAIDFLAYMVEKGCKPT 558

Query: 449 AETYSLL 455
             TY++L
Sbjct: 559 KATYTIL 565



 Score = 61.6 bits (148), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 56/213 (26%), Positives = 99/213 (46%), Gaps = 16/213 (7%)

Query: 246 GYLAKG-KDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKAT 304
           G L +G K LER+     ++P+V + + +  I  F R  +  +A  +   +++   +   
Sbjct: 121 GELEEGLKFLERMIYQ-GDIPDVIACTSL--IRGFCRSGKTRKATRIMEILENSGAVPDV 177

Query: 305 EQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALEL 364
             YN +I  YCK+G IDKA  +L+ MS+    P+ +TY  +      S  ++E  + L+ 
Sbjct: 178 ITYNVLIGGYCKSGEIDKALQVLERMSV---APDVVTYNTILRSLCDSGKLKEAMEVLDR 234

Query: 365 GMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIK 424
            M+       R   P + T   +IE       VG A  L +E++K         YN LI 
Sbjct: 235 QMQ-------RECYPDVITYTILIEATCNDSGVGQAMKLLDEMRKKGCKPDVVTYNVLIN 287

Query: 425 AYVK-AKINDP-NLLRRMILGGARPDAETYSLL 455
              K  ++++    L  M L G +P+  T++++
Sbjct: 288 GICKEGRLDEAIKFLNNMPLYGCQPNVITHNII 320



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 78/355 (21%), Positives = 145/355 (40%), Gaps = 52/355 (14%)

Query: 109 GVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTF 168
           G ++  L+++++M   G     +    LI      G+ +    I+  ++     P V T+
Sbjct: 121 GELEEGLKFLERMIYQGDIPDVIACTSLIRGFCRSGKTRKATRIMEILENSGAVPDVITY 180

Query: 169 HILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEK 228
           ++L+        I+  ++V   ++R  V P+ V+Y      + + R    +    EA+E 
Sbjct: 181 NVLIGGYCKSGEIDKALQV---LERMSVAPDVVTY------NTILRSLCDSGKLKEAME- 230

Query: 229 SMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRA 288
                    LD            + ++R     +  P+V   +Y + IEA    + V +A
Sbjct: 231 --------VLD------------RQMQR-----ECYPDV--ITYTILIEATCNDSGVGQA 263

Query: 289 EELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALG 348
            +L  EM+          YN +I+  CK G +D+A   L  M + GC+PN IT+      
Sbjct: 264 MKLLDEMRKKGCKPDVVTYNVLINGICKEGRLDEAIKFLNNMPLYGCQPNVITH------ 317

Query: 349 CFKSNLVEEGFKALELGM---KLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFE 405
               N++     +    M   +L+     +  +P + T   +I     K  +G A ++ E
Sbjct: 318 ----NIILRSMCSTGRWMDAERLLADMLRKGCSPSVVTFNILINFLCRKRLLGRAIDVLE 373

Query: 406 ELKKANYTKYTFVYNTLIKAYVKAKINDPNL--LRRMILGGARPDAETYSLLKLA 458
           ++ K      +  YN L+  + + K  D  +  L  M+  G  PD  TY+ L  A
Sbjct: 374 KMPKHGCMPNSLSYNPLLHGFCQEKKMDRAIEYLEIMVSRGCYPDIVTYNTLLTA 428



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 75/348 (21%), Positives = 133/348 (38%), Gaps = 47/348 (13%)

Query: 43  KRALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQGEKLF------CCIPKDYQNEL 96
           K A+EV++  ++   Y P  + Y+ L+E T  + G+ Q  KL        C P    + +
Sbjct: 226 KEAMEVLDRQMQRECY-PDVITYTILIEATCNDSGVGQAMKLLDEMRKKGCKP----DVV 280

Query: 97  LYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQM 156
            YN L+     +G +  +++++  M + G   + +  N ++    S GR      +L  M
Sbjct: 281 TYNVLINGICKEGRLDEAIKFLNNMPLYGCQPNVITHNIILRSMCSTGRWMDAERLLADM 340

Query: 157 KADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLY 216
                +P V TF+IL+        +   + V   M +    PN +SY  L       +  
Sbjct: 341 LRKGCSPSVVTFNILINFLCRKRLLGRAIDVLEKMPKHGCMPNSLSYNPLLHGFCQEKKM 400

Query: 217 TVAETYVEALEKSMTGNNWSTLDVLI--------------ILYGYLAKG----------- 251
             A  Y+E +       +  T + L+              IL    +KG           
Sbjct: 401 DRAIEYLEIMVSRGCYPDIVTYNTLLTALCKDGKADAAVEILNQLSSKGCSPVLITYNTV 460

Query: 252 -KDLERIWAT---VQELPNVRSK-------SYVLAIEAFGRIAQVSRAEELWLEMQSVKQ 300
              L ++  T    + L  +R K       +Y   +   G   +V  A +++ +M+ +  
Sbjct: 461 IDGLTKVGKTEYAAELLEEMRRKGLKPDIITYSTLLRGLGCEGKVDEAIKIFHDMEGLSI 520

Query: 301 LKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALG 348
             +   YN+++   CK     +A   L  M   GCKP   TY  L  G
Sbjct: 521 KPSAVTYNAIMLGLCKAQQTSRAIDFLAYMVEKGCKPTKATYTILIEG 568



 Score = 48.9 bits (115), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 41/179 (22%), Positives = 84/179 (46%), Gaps = 15/179 (8%)

Query: 33  INRLRKLQLNKRALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQGEKLFCCIP--- 89
           IN L + +L  RA++V+E + +     P  L Y+ LL      HG  Q +K+   I    
Sbjct: 356 INFLCRKRLLGRAIDVLEKMPKH-GCMPNSLSYNPLL------HGFCQEKKMDRAIEYLE 408

Query: 90  -----KDYQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPG 144
                  Y + + YN L+ A    G    ++E + ++   G S   + +N +I   +  G
Sbjct: 409 IMVSRGCYPDIVTYNTLLTALCKDGKADAAVEILNQLSSKGCSPVLITYNTVIDGLTKVG 468

Query: 145 RRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSY 203
           + +    +L +M+   + P + T+  L++    +  ++  +K++ DM+   ++P+ V+Y
Sbjct: 469 KTEYAAELLEEMRRKGLKPDIITYSTLLRGLGCEGKVDEAIKIFHDMEGLSIKPSAVTY 527



 Score = 38.1 bits (87), Expect = 9.7,   Method: Compositional matrix adjust.
 Identities = 36/143 (25%), Positives = 54/143 (37%), Gaps = 11/143 (7%)

Query: 319 FIDKASGLLKEMSMNGCKPNAI----TYRHLALGCFKSNLVEEGFKALELGMKLITTKKV 374
            +   +G L  + M    PN +    ++   A       LV  G   LE G+K +     
Sbjct: 78  IVSTPNGDLNGIGMESSSPNGVNGSRSFEEFASNIHLRKLVRNG--ELEEGLKFLERMIY 135

Query: 375 RSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKINDP 434
           +   P +    S+I  F   G    A  + E L+ +        YN LI  Y K+   D 
Sbjct: 136 QGDIPDVIACTSLIRGFCRSGKTRKATRIMEILENSGAVPDVITYNVLIGGYCKSGEIDK 195

Query: 435 NL--LRRMILGGARPDAETYSLL 455
            L  L RM +    PD  TY+ +
Sbjct: 196 ALQVLERMSVA---PDVVTYNTI 215


>gi|62319738|dbj|BAD95295.1| hypothetical protein [Arabidopsis thaliana]
          Length = 216

 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 50/216 (23%), Positives = 107/216 (49%), Gaps = 8/216 (3%)

Query: 248 LAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQY 307
           L +  +++RIW   +  P       + AI+AFG++ +V  AE ++ ++  + +  ++  Y
Sbjct: 1   LGREDEVKRIWKICESKPYFEES--LAAIQAFGKLNKVQEAEAIFEKIVKMDRRASSSTY 58

Query: 308 NSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMK 367
           + ++ VY  +  + K   L+K M+ +GC+  A T+  L     ++  VE+    L+   K
Sbjct: 59  SVLLRVYVDHKMLSKGKDLVKRMAESGCRIEATTWDALIKLYVEAGEVEKADSLLDKASK 118

Query: 368 LITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYV 427
              TK +      + + + I++ ++++GDV N E +F ++++A YT     +  L++AY+
Sbjct: 119 QSHTKLM------MNSFMYIMDEYSKRGDVHNTEKIFLKMREAGYTSRLRQFQALMQAYI 172

Query: 428 KAKINDPNLLRRMILGGARPDAETYSLLKLAEQFQK 463
             K     +  R+      P+    + L   + F+K
Sbjct: 173 NTKSPAYGMRDRLKADNIFPNKSMAAQLAQGDPFKK 208


>gi|15234269|ref|NP_192906.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75213756|sp|Q9T0D6.1|PP306_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g11690
 gi|4539460|emb|CAB39940.1| putative protein [Arabidopsis thaliana]
 gi|7267869|emb|CAB78212.1| putative protein [Arabidopsis thaliana]
 gi|91806660|gb|ABE66057.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332657639|gb|AEE83039.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 566

 Score = 73.9 bits (180), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 85/387 (21%), Positives = 171/387 (44%), Gaps = 31/387 (8%)

Query: 55  ERPYRPKELDYSYLLEFTIKNHGISQGEKLFCCIPKDYQNELL-----YNNLVIACLDKG 109
           +  + P    ++YLL F + +   +Q    F     + +++++     +  L+  C + G
Sbjct: 122 DNGFVPGSNCFNYLLTFVVGSSSFNQWWSFF----NENKSKVVLDVYSFGILIKGCCEAG 177

Query: 110 VIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFH 169
            I+ S + + ++   G S + +++  LI      G  +   ++  +M    +  +  T+ 
Sbjct: 178 EIEKSFDLLIELTEFGFSPNVVIYTTLIDGCCKKGEIEKAKDLFFEMGKLGLVANERTYT 237

Query: 170 ILMK-IEANDHNIEGLMKVYSDMKRSEVEPNEVSY-CILATAHAVARLYTVAETYVEALE 227
           +L+  +  N    +G  ++Y  M+   V PN  +Y C++       R     + + E  E
Sbjct: 238 VLINGLFKNGVKKQGF-EMYEKMQEDGVFPNLYTYNCVMNQLCKDGRTKDAFQVFDEMRE 296

Query: 228 KSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQEL------PNVRSKSYVLAIEAFGR 281
           + ++ N   T + LI   G L +   L      V ++      PN+ +  Y   I+ F  
Sbjct: 297 RGVSCN-IVTYNTLI---GGLCREMKLNEANKVVDQMKSDGINPNLIT--YNTLIDGFCG 350

Query: 282 IAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAIT 341
           + ++ +A  L  +++S     +   YN ++S +C+ G    A+ ++KEM   G KP+ +T
Sbjct: 351 VGKLGKALSLCRDLKSRGLSPSLVTYNILVSGFCRKGDTSGAAKMVKEMEERGIKPSKVT 410

Query: 342 YRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAE 401
           Y  L     +S+ +E   KA++L + +     V    P + T   +I  F  KG +  A 
Sbjct: 411 YTILIDTFARSDNME---KAIQLRLSMEELGLV----PDVHTYSVLIHGFCIKGQMNEAS 463

Query: 402 NLFEELKKANYTKYTFVYNTLIKAYVK 428
            LF+ + + N      +YNT+I  Y K
Sbjct: 464 RLFKSMVEKNCEPNEVIYNTMILGYCK 490



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 72/293 (24%), Positives = 134/293 (45%), Gaps = 15/293 (5%)

Query: 62  ELDYSYLLEFTIKNHGISQGEKLFCCIPKD--YQNELLYNNLVIACLDKGVIKLSLEYMK 119
           E  Y+ L+    KN    QG +++  + +D  + N   YN ++      G  K + +   
Sbjct: 233 ERTYTVLINGLFKNGVKKQGFEMYEKMQEDGVFPNLYTYNCVMNQLCKDGRTKDAFQVFD 292

Query: 120 KMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDH 179
           +MR  G S + + +N LI       +      ++ QMK+D + P++ T++ L+       
Sbjct: 293 EMRERGVSCNIVTYNTLIGGLCREMKLNEANKVVDQMKSDGINPNLITYNTLIDGFCGVG 352

Query: 180 NIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLD 239
            +   + +  D+K   + P+ V+Y IL +        + A   V+ +E+     +  T  
Sbjct: 353 KLGKALSLCRDLKSRGLSPSLVTYNILVSGFCRKGDTSGAAKMVKEMEERGIKPSKVTYT 412

Query: 240 VLIILYGYLAKGKDLER---IWATVQEL---PNVRSKSYVLAIEAFGRIAQVSRAEELWL 293
           +LI  +   A+  ++E+   +  +++EL   P+V +  Y + I  F    Q++ A  L+ 
Sbjct: 413 ILIDTF---ARSDNMEKAIQLRLSMEELGLVPDVHT--YSVLIHGFCIKGQMNEASRLFK 467

Query: 294 EMQSVKQLKATEQ-YNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHL 345
            M   K  +  E  YN++I  YCK G   +A  LLKEM      PN  +YR++
Sbjct: 468 SMVE-KNCEPNEVIYNTMILGYCKEGSSYRALKLLKEMEEKELAPNVASYRYM 519



 Score = 45.1 bits (105), Expect = 0.080,   Method: Compositional matrix adjust.
 Identities = 54/250 (21%), Positives = 112/250 (44%), Gaps = 7/250 (2%)

Query: 94  NELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNIL 153
           N + YN L+     +  +  + + + +M+  G + + + +N LI      G+     ++ 
Sbjct: 302 NIVTYNTLIGGLCREMKLNEANKVVDQMKSDGINPNLITYNTLIDGFCGVGKLGKALSLC 361

Query: 154 RQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVA 213
           R +K+  ++P + T++IL+       +  G  K+  +M+   ++P++V+Y IL    A +
Sbjct: 362 RDLKSRGLSPSLVTYNILVSGFCRKGDTSGAAKMVKEMEERGIKPSKVTYTILIDTFARS 421

Query: 214 RLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGK--DLERIWATVQELPNVRSKS 271
                A     ++E+     +  T  VLI  +G+  KG+  +  R++ ++ E  N     
Sbjct: 422 DNMEKAIQLRLSMEELGLVPDVHTYSVLI--HGFCIKGQMNEASRLFKSMVE-KNCEPNE 478

Query: 272 YVLAIEAFGRIAQVS--RAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKE 329
            +      G   + S  RA +L  EM+  +       Y  +I V CK     +A  L+++
Sbjct: 479 VIYNTMILGYCKEGSSYRALKLLKEMEEKELAPNVASYRYMIEVLCKERKSKEAERLVEK 538

Query: 330 MSMNGCKPNA 339
           M  +G  P+ 
Sbjct: 539 MIDSGIDPST 548


>gi|356530056|ref|XP_003533600.1| PREDICTED: pentatricopeptide repeat-containing protein At1g62670,
           mitochondrial-like [Glycine max]
          Length = 694

 Score = 73.9 bits (180), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 77/304 (25%), Positives = 127/304 (41%), Gaps = 10/304 (3%)

Query: 155 QMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVAR 214
           +M +  + P V T+  L+        + G   + ++M    + P+  +Y IL  A     
Sbjct: 297 EMNSRGIFPDVITYSTLICGFCLAGQLMGAFSLLNEMTLKNINPDVYTYTILIDALCKEG 356

Query: 215 LYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIW-ATVQELPNVRSKSYV 273
               A+  +  + K     N  T   L+  Y  + +  + ++I+ A VQ   N    SY 
Sbjct: 357 KLKEAKNLLGVMTKEGVKPNVVTYSTLMDGYCLVGEVHNAKQIFHAMVQTEVNPSVCSYN 416

Query: 274 LAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMN 333
           + I    +   V  A  L  EM     +  T  YNS+I   CK+G I  A  L+KE+   
Sbjct: 417 IMINGLCKGKSVDEAMNLLREMLHKNVVPNTVTYNSLIDGLCKSGRITSALDLMKELHHR 476

Query: 334 GCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAE 393
           G   + ITY  L  G  K+  ++   KA+ L MK+    K R   P   T  ++I+   +
Sbjct: 477 GQPADVITYTSLLDGLCKNQNLD---KAIALFMKM----KERGIQPNKYTYTALIDGLCK 529

Query: 394 KGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKINDPNLL--RRMILGGARPDAET 451
              + NA+ LF+ +         + YN +I    K  + D  L    +M   G  PDA T
Sbjct: 530 GARLKNAQKLFQHILVKGCCIDVYTYNVMIGGLCKEGMLDEALAMKSKMEDNGCIPDAVT 589

Query: 452 YSLL 455
           + ++
Sbjct: 590 FEII 593



 Score = 58.2 bits (139), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 72/363 (19%), Positives = 151/363 (41%), Gaps = 43/363 (11%)

Query: 20  EGFPVHRGEIFHSINRLRKLQLNKRALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGIS 79
           +GF +++      +N L K+   + A++++  +I +R  RP  + Y+ +++   K+  ++
Sbjct: 231 QGFQMNQVSYGTLLNGLCKIGETRCAIKLLR-MIEDRSTRPDVVMYNTIIDGLCKDKLVN 289

Query: 80  QGEKLFCCIPKD--YQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLI 137
           +    +  +     + + + Y+ L+      G +  +   + +M +   +     +  LI
Sbjct: 290 EAYDFYTEMNSRGIFPDVITYSTLICGFCLAGQLMGAFSLLNEMTLKNINPDVYTYTILI 349

Query: 138 ILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVE 197
                 G+ K   N+L  M  + V P+V T+  LM        +    +++  M ++EV 
Sbjct: 350 DALCKEGKLKEAKNLLGVMTKEGVKPNVVTYSTLMDGYCLVGEVHNAKQIFHAMVQTEVN 409

Query: 198 PNEVSYCILATAHAVARLYTVAETYV-EALEKSMTGNN----------------WSTLDV 240
           P+  SY I+       +    A   + E L K++  N                  S LD+
Sbjct: 410 PSVCSYNIMINGLCKGKSVDEAMNLLREMLHKNVVPNTVTYNSLIDGLCKSGRITSALDL 469

Query: 241 L-----------IILYGYLAKG----KDLERIWATVQEL------PNVRSKSYVLAIEAF 279
           +           +I Y  L  G    ++L++  A   ++      PN    +Y   I+  
Sbjct: 470 MKELHHRGQPADVITYTSLLDGLCKNQNLDKAIALFMKMKERGIQPN--KYTYTALIDGL 527

Query: 280 GRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNA 339
            + A++  A++L+  +           YN +I   CK G +D+A  +  +M  NGC P+A
Sbjct: 528 CKGARLKNAQKLFQHILVKGCCIDVYTYNVMIGGLCKEGMLDEALAMKSKMEDNGCIPDA 587

Query: 340 ITY 342
           +T+
Sbjct: 588 VTF 590


>gi|293333874|ref|NP_001167998.1| hypothetical protein [Zea mays]
 gi|223945411|gb|ACN26789.1| unknown [Zea mays]
 gi|223946291|gb|ACN27229.1| unknown [Zea mays]
 gi|414584797|tpg|DAA35368.1| TPA: hypothetical protein ZEAMMB73_806553 [Zea mays]
          Length = 532

 Score = 73.9 bits (180), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 74/334 (22%), Positives = 141/334 (42%), Gaps = 23/334 (6%)

Query: 133 FNRLIILNSSPGRRKTIPNILRQMK--ADKVAPHVSTFHILMKIEANDHNIEGLMKVYSD 190
           FNRL+   +  G       +LR+M+  +   AP  +++   M   A          ++ D
Sbjct: 48  FNRLLAALARDGDGDAALRVLRRMRLSSPACAPTAASYTSAMSALAKAGRPADAASLFDD 107

Query: 191 MKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAK 250
           M  + V P+  ++ +L   ++ + L+  A  +   L  +  G   + +D   +++ +   
Sbjct: 108 MLANGVAPDRAAFSLLLHVYS-SHLHLPAAAHSVLLWMTGLGLPPTPIDYTDLIFSFCRA 166

Query: 251 GKDLERIWATVQELPNVRSKSYVLAIEAFGRI-------AQVSRAEELWLEMQSVKQLKA 303
           G    R+    Q L  +R+ +Y L   AF  I       A +  A+ L   M+S   L  
Sbjct: 167 G----RLHNAFQLLDEMRALNYPLTPHAFAPILKAVCDNADIQAADALISSMRSSGCLPD 222

Query: 304 TEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALE 363
              YN  I   CK G  D    ++ E + NG +P+A+TY    +G   S  +EE F+ LE
Sbjct: 223 VVVYNIYIHGLCKIGDFDAVERVIYESARNGWEPDAVTYSTYIVGLCCSGHIEEAFRQLE 282

Query: 364 LGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLI 423
               ++  K ++ +   L   L  +   A+  D+   + + E  ++  +      YNT++
Sbjct: 283 ----IVVAKGLQLTAVGLNILLDHV---AQNLDMWVGKEVLERCQELGFVVDVVTYNTVM 335

Query: 424 KAYVKAK--INDPNLLRRMILGGARPDAETYSLL 455
             + K    +    L   ++     P+ +TY++L
Sbjct: 336 DHFCKKGKWLRVLKLFTDLLKKPIAPNVQTYNIL 369


>gi|30840221|emb|CAD61285.1| fertility restorer [Raphanus sativus]
 gi|32452380|emb|CAD80165.1| restorer of fertility pentatricopeptide repeat [Raphanus sativus]
 gi|32527602|gb|AAP86198.1| pentatricopeptide repeat-containing protein [Raphanus sativus]
 gi|90903522|gb|ABE02309.1| Rf [Raphanus sativus]
 gi|90903524|gb|ABE02310.1| Rf [Raphanus sativus]
 gi|157931524|gb|ABW04886.1| PPR [Raphanus sativus]
          Length = 687

 Score = 73.9 bits (180), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 104/435 (23%), Positives = 177/435 (40%), Gaps = 61/435 (14%)

Query: 30  FHSINRLRKLQLNKRALEVMEWVIRERPYRPKELDYSYLLEFTIK----NHGISQGEKLF 85
           FH I  L        A+++   ++R RP  P  +D+  L+   ++    +  IS  +K+ 
Sbjct: 54  FHEIKGLED------AIDLFSDMLRSRPL-PSVVDFCKLMGVVVRMERPDLVISLYQKM- 105

Query: 86  CCIPKDYQNELLYNNLVIACL-DKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPG 144
               K  + ++   N++I C      +  +L    K+  LG     + F  L+       
Sbjct: 106 --ERKQIRCDIYSFNILIKCFCSCSKLPFALSTFGKITKLGLHPDVVTFTTLLHGLCVED 163

Query: 145 RRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYC 204
           R     +   QM      P+V TF  LM     +  I   + +   M    ++P +++Y 
Sbjct: 164 RVSEALDFFHQMFETTCRPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITY- 222

Query: 205 ILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQEL 264
                           T V+ + K   G+  S L++L          + +E +   +   
Sbjct: 223 ---------------GTIVDGMCKK--GDTVSALNLL----------RKMEEVSHII--- 252

Query: 265 PNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKAS 324
           PNV   S +  I++  +  + S A+ L+ EMQ          YNS+I  +C +G    A 
Sbjct: 253 PNVVIYSAI--IDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVGFCSSGRWSDAE 310

Query: 325 GLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEG--FKALELGMKLITTKKVRSSTPWLE 382
            LL+EM      P+ +TY  L      +  V+EG  F+A EL  +++     R   P   
Sbjct: 311 QLLQEMLERKISPDVVTYNALI-----NAFVKEGKFFEAEELYDEMLP----RGIIPNTI 361

Query: 383 TTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAK-INDP-NLLRRM 440
           T  S+I+ F ++  +  AE++F  +     +     +NTLI  Y  AK I+D   LL  M
Sbjct: 362 TYSSMIDGFCKQNRLDAAEHMFYLMATKGCSPNLITFNTLIDGYCGAKRIDDGMELLHEM 421

Query: 441 ILGGARPDAETYSLL 455
              G   D  TY+ L
Sbjct: 422 TETGLVADTTTYNTL 436



 Score = 66.2 bits (160), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 69/294 (23%), Positives = 133/294 (45%), Gaps = 20/294 (6%)

Query: 172 MKIEANDHNIEGL---MKVYSDMKRSEVEPNEVSYC-ILATAHAVARLYTVAETYVEALE 227
           +K+++  H I+GL   + ++SDM RS   P+ V +C ++     + R   V   Y + +E
Sbjct: 48  LKLQSGFHEIKGLEDAIDLFSDMLRSRPLPSVVDFCKLMGVVVRMERPDLVISLY-QKME 106

Query: 228 KSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQEL---PNVRSKSYVLAIEAFGRIAQ 284
           +     +  + ++LI  +   +K       +  + +L   P+V   ++   +       +
Sbjct: 107 RKQIRCDIYSFNILIKCFCSCSKLPFALSTFGKITKLGLHPDV--VTFTTLLHGLCVEDR 164

Query: 285 VSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRH 344
           VS A + + +M           + ++++  C+ G I +A  LL  M  +G +P  ITY  
Sbjct: 165 VSEALDFFHQMFETTCRPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGT 224

Query: 345 LALG-CFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENL 403
           +  G C K + V     AL L  K+   ++V    P +    +II+   + G   +A+NL
Sbjct: 225 IVDGMCKKGDTV----SALNLLRKM---EEVSHIIPNVVIYSAIIDSLCKDGRHSDAQNL 277

Query: 404 FEELKKANYTKYTFVYNTLIKAYVKAK--INDPNLLRRMILGGARPDAETYSLL 455
           F E+++       F YN++I  +  +    +   LL+ M+     PD  TY+ L
Sbjct: 278 FTEMQEKGIFPDLFTYNSMIVGFCSSGRWSDAEQLLQEMLERKISPDVVTYNAL 331



 Score = 61.2 bits (147), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 70/318 (22%), Positives = 122/318 (38%), Gaps = 19/318 (5%)

Query: 131 LVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSD 190
             +N +I+   S GR      +L++M   K++P V T++ L+     +       ++Y +
Sbjct: 291 FTYNSMIVGFCSSGRWSDAEQLLQEMLERKISPDVVTYNALINAFVKEGKFFEAEELYDE 350

Query: 191 MKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAK 250
           M    + PN ++Y  +            AE     +       N  T + LI  Y    +
Sbjct: 351 MLPRGIIPNTITYSSMIDGFCKQNRLDAAEHMFYLMATKGCSPNLITFNTLIDGYCGAKR 410

Query: 251 GKDLERIWATVQELPNV-RSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNS 309
             D   +   + E   V  + +Y   I  F  +  ++ A +L  EM S          ++
Sbjct: 411 IDDGMELLHEMTETGLVADTTTYNTLIHGFYLVGDLNAALDLLQEMISSGLCPDIVTCDT 470

Query: 310 VISVYCKNGFIDKASGLLKEMS-----------MNGCKPNAITYRHLALGCFKSNLVEEG 358
           ++   C NG +  A  + K M             NG +P+  TY  L      S L+ EG
Sbjct: 471 LLDGLCDNGKLKDALEMFKVMQKSKKDLDASHPFNGVEPDVQTYNILI-----SGLINEG 525

Query: 359 FKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFV 418
            K LE   +L      R   P   T  S+I+   ++  +  A  +F+ +   +++     
Sbjct: 526 -KFLE-AEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFDSMGSKSFSPNVVT 583

Query: 419 YNTLIKAYVKAKINDPNL 436
           + TLI  Y KA   D  L
Sbjct: 584 FTTLINGYCKAGRVDDGL 601



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 70/350 (20%), Positives = 142/350 (40%), Gaps = 26/350 (7%)

Query: 98  YNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMK 157
           YN L+ A + +G    + E   +M   G   + + ++ +I       R     ++   M 
Sbjct: 328 YNALINAFVKEGKFFEAEELYDEMLPRGIIPNTITYSSMIDGFCKQNRLDAAEHMFYLMA 387

Query: 158 ADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYT 217
               +P++ TF+ L+        I+  M++  +M  + +  +  +Y  L     +     
Sbjct: 388 TKGCSPNLITFNTLIDGYCGAKRIDDGMELLHEMTETGLVADTTTYNTLIHGFYLVGDLN 447

Query: 218 VAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQEL------------- 264
            A   ++ +  S    +  T D L+       K KD   ++  +Q+              
Sbjct: 448 AALDLLQEMISSGLCPDIVTCDTLLDGLCDNGKLKDALEMFKVMQKSKKDLDASHPFNGV 507

Query: 265 -PNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKA 323
            P+V  ++Y + I       +   AEEL+ EM     +  T  Y+S+I   CK   +D+A
Sbjct: 508 EPDV--QTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEA 565

Query: 324 SGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKAL-ELGMKLITTKKVRSSTPWLE 382
           + +   M      PN +T+  L  G  K+  V++G +   E+G + I    +        
Sbjct: 566 TQMFDSMGSKSFSPNVVTFTTLINGYCKAGRVDDGLELFCEMGRRGIVANAI-------- 617

Query: 383 TTLSIIEIFAEKGDVGNAENLFEELKKAN-YTKYTFVYNTLIKAYVKAKI 431
           T +++I  F + G++  A ++F+E+  +  Y     + N L   + K ++
Sbjct: 618 TYITLICGFRKVGNINGALDIFQEMISSGVYPDTITIRNMLTGLWSKEEL 667


>gi|224103543|ref|XP_002313097.1| predicted protein [Populus trichocarpa]
 gi|222849505|gb|EEE87052.1| predicted protein [Populus trichocarpa]
          Length = 751

 Score = 73.9 bits (180), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 90/387 (23%), Positives = 166/387 (42%), Gaps = 56/387 (14%)

Query: 80  QGEKLFCCIPKDY----QNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNR 135
           +G   F C+   Y     +  +++ +V +C     I+ +L  +   ++ G     L +N 
Sbjct: 113 KGNYFFQCLKDTYFMCNSSSAVFDLVVKSCSYLNFIEKALNIVDLAKLNGFMPGVLSYNA 172

Query: 136 LIILNSSPGRRKTI---PNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMK 192
             IL+S    RK +     + R+M A  V+ +V +++IL++      N+E  ++ + +M+
Sbjct: 173 --ILDSIVRCRKPVIFAEKVYREMIASGVSLNVFSYNILIRGFCAAGNLEMGLRFFEEME 230

Query: 193 RSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGK 252
           R+   PN V+Y  +  A+   +L  + E +   L +SM                      
Sbjct: 231 RNRCLPNVVTYNTVIGAY--CKLKRIDEAF--KLLRSM---------------------- 264

Query: 253 DLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVIS 312
            LE +       PN+   +Y + I    R+ ++     +  EM           YN++++
Sbjct: 265 GLEGLE------PNLL--TYNMVINGLCRVGRIEETSGVLAEMDRKGFAPDGVTYNTLVN 316

Query: 313 VYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKA--LELGMKLIT 370
            YCK G   +A  L  EM  NG  P+ +TY         ++L+    KA  L   M+   
Sbjct: 317 GYCKVGNFHQALVLHSEMLRNGLPPDVVTY---------TSLINTMCKAGNLNRAMEFFD 367

Query: 371 TKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAY-VKA 429
              VR   P   T  S+I  F++KG +  A  +++E+ ++ +      YN L+  + V  
Sbjct: 368 QMHVRGLRPNGVTYTSLINGFSQKGFMDEAYRIWDEMIRSGFPPTIVTYNALLNGHCVSG 427

Query: 430 KINDP-NLLRRMILGGARPDAETYSLL 455
           ++ +   LLR M   G  PD  +YS +
Sbjct: 428 RMEEAIGLLRGMEGKGLSPDVVSYSTI 454



 Score = 72.8 bits (177), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 81/377 (21%), Positives = 152/377 (40%), Gaps = 59/377 (15%)

Query: 87  CIPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRR 146
           C+P    N + YN ++ A      I  + + ++ M + G   + L +N +I      GR 
Sbjct: 234 CLP----NVVTYNTVIGAYCKLKRIDEAFKLLRSMGLEGLEPNLLTYNMVINGLCRVGRI 289

Query: 147 KTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCIL 206
           +    +L +M     AP   T++ L+       N    + ++S+M R+ + P+ V+Y  L
Sbjct: 290 EETSGVLAEMDRKGFAPDGVTYNTLVNGYCKVGNFHQALVLHSEMLRNGLPPDVVTYTSL 349

Query: 207 ATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQEL-- 264
                                                    + K  +L R      ++  
Sbjct: 350 INT--------------------------------------MCKAGNLNRAMEFFDQMHV 371

Query: 265 ----PNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFI 320
               PN    +Y   I  F +   +  A  +W EM           YN++++ +C +G +
Sbjct: 372 RGLRPN--GVTYTSLINGFSQKGFMDEAYRIWDEMIRSGFPPTIVTYNALLNGHCVSGRM 429

Query: 321 DKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPW 380
           ++A GLL+ M   G  P+ ++Y  +  G  +    +E  +A ++  +++     +  +P 
Sbjct: 430 EEAIGLLRGMEGKGLSPDVVSYSTIIAGFCR---YQELDRAFQMNAEMVE----KGVSPD 482

Query: 381 LETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVK-AKINDP-NLLR 438
             T  S+I+   E+  +  A +LF+E+   +     F Y +LI  Y K   +N+  NL  
Sbjct: 483 AITYSSLIQGLCEQRRLNEACDLFQEMLNKSLLPDEFTYTSLINGYCKEGDLNEALNLHD 542

Query: 439 RMILGGARPDAETYSLL 455
            MI  G  PD  TY++L
Sbjct: 543 EMIKKGFLPDTVTYNVL 559



 Score = 62.4 bits (150), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 76/348 (21%), Positives = 141/348 (40%), Gaps = 25/348 (7%)

Query: 98  YNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMK 157
           YN LV      G    +L    +M   G     + +  LI      G          QM 
Sbjct: 311 YNTLVNGYCKVGNFHQALVLHSEMLRNGLPPDVVTYTSLINTMCKAGNLNRAMEFFDQMH 370

Query: 158 ADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYT 217
              + P+  T+  L+   +    ++   +++ +M RS   P  V+Y  L   H V+    
Sbjct: 371 VRGLRPNGVTYTSLINGFSQKGFMDEAYRIWDEMIRSGFPPTIVTYNALLNGHCVSGRME 430

Query: 218 VAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQEL------PNVRSKS 271
            A   +  +E    G +   +    I+ G+  + ++L+R +    E+      P+  + +
Sbjct: 431 EAIGLLRGMEGK--GLSPDVVSYSTIIAGF-CRYQELDRAFQMNAEMVEKGVSPD--AIT 485

Query: 272 YVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMS 331
           Y   I+      +++ A +L+ EM +   L     Y S+I+ YCK G +++A  L  EM 
Sbjct: 486 YSSLIQGLCEQRRLNEACDLFQEMLNKSLLPDEFTYTSLINGYCKEGDLNEALNLHDEMI 545

Query: 332 MNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPW----------- 380
             G  P+ +TY  L  G  K     E  + L   +KL   + + +   +           
Sbjct: 546 KKGFLPDTVTYNVLINGLNKQARTREAKRLL---LKLFYDESIPNGITYDTLIESCSDIE 602

Query: 381 LETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVK 428
            ++ +++I+ F  KG +  A+ +FE + K N      VYN +I  + +
Sbjct: 603 FKSVVALIKGFCMKGLMNEADQVFESMIKRNQKPNEAVYNVIIHGHCR 650



 Score = 49.7 bits (117), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 69/371 (18%), Positives = 145/371 (39%), Gaps = 60/371 (16%)

Query: 94  NELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNIL 153
           N + Y +L+     KG +  +     +M   G   + + +N L+  +   GR +    +L
Sbjct: 377 NGVTYTSLINGFSQKGFMDEAYRIWDEMIRSGFPPTIVTYNALLNGHCVSGRMEEAIGLL 436

Query: 154 RQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVA 213
           R M+   ++P V ++  ++        ++   ++ ++M    V P+ ++Y  L       
Sbjct: 437 RGMEGKGLSPDVVSYSTIIAGFCRYQELDRAFQMNAEMVEKGVSPDAITYSSLIQGLCEQ 496

Query: 214 R-LYTVAETYVEALEKSMTGNNWS----------------------------------TL 238
           R L    + + E L KS+  + ++                                  T 
Sbjct: 497 RRLNEACDLFQEMLNKSLLPDEFTYTSLINGYCKEGDLNEALNLHDEMIKKGFLPDTVTY 556

Query: 239 DVLIILYGYLAKGKDLERIWATV---QELPN-------------VRSKSYVLAIEAFGRI 282
           +VLI      A+ ++ +R+   +   + +PN             +  KS V  I+ F   
Sbjct: 557 NVLINGLNKQARTREAKRLLLKLFYDESIPNGITYDTLIESCSDIEFKSVVALIKGFCMK 616

Query: 283 AQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITY 342
             ++ A++++  M    Q      YN +I  +C++G + KA  L KEM   G  P+ +T 
Sbjct: 617 GLMNEADQVFESMIKRNQKPNEAVYNVIIHGHCRDGNVHKAHKLYKEMVDFGFIPHTVTI 676

Query: 343 RHLALGCFKSNLVEEGFKALELGMKLITTKKVRSST-PWLETTLSIIEIFAEKGDVGNAE 401
             L    +   + E+        + L+    +RS      E + ++++I  ++G++    
Sbjct: 677 IALVKALYSEGMDEQ--------LNLVIRDILRSCKLSDAELSKALVQINHKEGNIDAVF 728

Query: 402 NLFEELKKANY 412
           NL  E+ K  +
Sbjct: 729 NLLTEMAKDGF 739



 Score = 47.0 bits (110), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 89/377 (23%), Positives = 147/377 (38%), Gaps = 37/377 (9%)

Query: 98  YNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMK 157
           Y +L+      G +  ++E+  +M V G   + + +  LI   S  G       I  +M 
Sbjct: 346 YTSLINTMCKAGNLNRAMEFFDQMHVRGLRPNGVTYTSLINGFSQKGFMDEAYRIWDEMI 405

Query: 158 ADKVAPHVSTFHILMKIEANDHNIEGLMK----VYSDMKRSEVEPNEVSY-CILATAHAV 212
                P + T++ L+    N H + G M+    +   M+   + P+ VSY  I+A     
Sbjct: 406 RSGFPPTIVTYNALL----NGHCVSGRMEEAIGLLRGMEGKGLSPDVVSYSTIIAGFCRY 461

Query: 213 ARLYTVAETYVEALEKSMTGN--NWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSK 270
             L    +   E +EK ++ +   +S+L   +     L +  DL +       LP+    
Sbjct: 462 QELDRAFQMNAEMVEKGVSPDAITYSSLIQGLCEQRRLNEACDLFQEMLNKSLLPD--EF 519

Query: 271 SYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEM 330
           +Y   I  + +   ++ A  L  EM     L  T  YN +I+   K     +A  LL ++
Sbjct: 520 TYTSLINGYCKEGDLNEALNLHDEMIKKGFLPDTVTYNVLINGLNKQARTREAKRLLLKL 579

Query: 331 SMNGCKPNAITYRHLALGC----FKS-----------NLVEEGFKALELGMKLITTKKVR 375
             +   PN ITY  L   C    FKS            L+ E  +  E  +K       R
Sbjct: 580 FYDESIPNGITYDTLIESCSDIEFKSVVALIKGFCMKGLMNEADQVFESMIK-------R 632

Query: 376 SSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKA-YVKAKINDP 434
           +  P       II      G+V  A  L++E+    +  +T     L+KA Y +      
Sbjct: 633 NQKPNEAVYNVIIHGHCRDGNVHKAHKLYKEMVDFGFIPHTVTIIALVKALYSEGMDEQL 692

Query: 435 NLLRRMILGGAR-PDAE 450
           NL+ R IL   +  DAE
Sbjct: 693 NLVIRDILRSCKLSDAE 709


>gi|388513011|gb|AFK44567.1| unknown [Medicago truncatula]
          Length = 348

 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 74/353 (20%), Positives = 146/353 (41%), Gaps = 45/353 (12%)

Query: 92  YQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPN 151
           + N +  N L+     KG I  +  +  K+  LG  +  + +  LI      G  +   +
Sbjct: 4   HPNTITLNTLIKGLCLKGQIHQAFLFHDKLVALGFHLDQVSYGTLIHGLCKVGETRAALD 63

Query: 152 ILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATA-H 210
           +L+++    V  +   ++ ++     D ++     +YS+M    + PN V+Y  L +   
Sbjct: 64  LLQRVDGKLVQLNAVMYNTVIYGMCKDKHVNDAFDLYSEMVSKGISPNVVTYSALISGFF 123

Query: 211 AVARLYTVAETYVEALEKSMTGNNWSTLDVL----------------------------I 242
            V +L    + + + + +++  + + T ++L                            +
Sbjct: 124 VVGKLKDAIDLFNKIILENIKPDGY-TFNILVDGFCKDRKMKEGKTVFAMMMKQGIIPDV 182

Query: 243 ILYGYLAKGKDLERIWATVQELPNVRS--------KSYVLAIEAFGRIAQVSRAEELWLE 294
           + Y  L  G  L +   T + + N  +        +SY + I  F +I +V +A  L+ E
Sbjct: 183 VTYNSLVDGYRLVKEVNTAKSIFNTMAQGGVNPDIRSYNILINGFCKIKKVDKAMNLFNE 242

Query: 295 MQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNL 354
           M     +     YNS+I    K+G I  A  L+ +M   G  PN +TY  +    FK++ 
Sbjct: 243 MHCKNIIPNVVTYNSLIDGLSKSGRISYALQLVDQMHDRGVPPNILTYNSIIDALFKTHQ 302

Query: 355 VEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEEL 407
           V++        + LIT  K +   P + T   +I+   + G + +A N+FE+L
Sbjct: 303 VDK-------AIALITKFKDQGIQPSMYTYTILIDGLCKGGRLKDARNIFEDL 348



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 48/188 (25%), Positives = 82/188 (43%), Gaps = 11/188 (5%)

Query: 271 SYVLAIEAFGRIAQVSRAEELWLEMQS-VKQLKATEQYNSVISVYCKNGFIDKASGLLKE 329
           SY   I    ++ +   A +L   +   + QL A   YN+VI   CK+  ++ A  L  E
Sbjct: 44  SYGTLIHGLCKVGETRAALDLLQRVDGKLVQLNAV-MYNTVIYGMCKDKHVNDAFDLYSE 102

Query: 330 MSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIE 389
           M   G  PN +TY  L  G F    +++   A++L  K+I    + +  P   T   +++
Sbjct: 103 MVSKGISPNVVTYSALISGFFVVGKLKD---AIDLFNKII----LENIKPDGYTFNILVD 155

Query: 390 IFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAY--VKAKINDPNLLRRMILGGARP 447
            F +   +   + +F  + K         YN+L+  Y  VK      ++   M  GG  P
Sbjct: 156 GFCKDRKMKEGKTVFAMMMKQGIIPDVVTYNSLVDGYRLVKEVNTAKSIFNTMAQGGVNP 215

Query: 448 DAETYSLL 455
           D  +Y++L
Sbjct: 216 DIRSYNIL 223


>gi|115438490|ref|NP_001043552.1| Os01g0611900 [Oryza sativa Japonica Group]
 gi|21104680|dbj|BAB93270.1| fertility restorer homologue-like [Oryza sativa Japonica Group]
 gi|113533083|dbj|BAF05466.1| Os01g0611900 [Oryza sativa Japonica Group]
 gi|125571150|gb|EAZ12665.1| hypothetical protein OsJ_02580 [Oryza sativa Japonica Group]
 gi|215767882|dbj|BAH00111.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 800

 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 83/374 (22%), Positives = 156/374 (41%), Gaps = 31/374 (8%)

Query: 95  ELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLI--ILNSSPGRRKTIPNI 152
           ++ Y  L+  C ++G+ + + E  ++MR  G   S   FN +I  +LN      K   ++
Sbjct: 317 DVTYTVLIRGCTEEGMPEKAYELCRQMRDHGLLPSTNEFNMVIKGLLNDK--LWKDAVSL 374

Query: 153 LRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAV 212
            ++M AD   P   T++IL+        I   + ++  M  + V+P  V+Y  L   + V
Sbjct: 375 FKEM-ADSGIPDAFTYNILIHWLCQRRKIREALNLWEKMNETGVKPYIVTYHSLLLCYCV 433

Query: 213 -ARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKG----KDLERIWATVQELP-- 265
              +    + Y E   K  T N        ++ Y  L KG       ++ +A + E+   
Sbjct: 434 NGCMDEAVKLYTEMPGKGFTPN--------VVTYTTLMKGHINKAAFDKAYALLAEMKQN 485

Query: 266 --NVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKA 323
             +    +Y   I     + +V    E+    ++   +     YNS+I+ + K G +  A
Sbjct: 486 GVSCNDYTYNTLINGLCVVGRVCEVGEMLKRFETEGFVPTAMTYNSIINGFIKAGMMGSA 545

Query: 324 SGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLET 383
             + ++M   G  PN +TY     G  K++         +L +K++   + +   P +  
Sbjct: 546 FAVYQQMCAKGIPPNIVTYTSFIDGYCKTS-------CCDLALKMLNDVRCKGLRPDIAA 598

Query: 384 TLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKINDP--NLLRRMI 441
             S+I  F ++G++ +A  +   + K        VYN+ I  Y   K+ +    L  +MI
Sbjct: 599 YNSLIFGFCQEGNMSHALQVLVLMLKDGLLPNISVYNSFITGYKNLKMMEEALRLYEKMI 658

Query: 442 LGGARPDAETYSLL 455
             G   D  TY+ L
Sbjct: 659 KEGIDLDTATYTTL 672



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 62/299 (20%), Positives = 125/299 (41%), Gaps = 14/299 (4%)

Query: 63  LDYSYLLEFTIKNHGISQGEKLFCCIPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMR 122
            D +Y L   +K +G+S       C      N+  YN L+      G +    E +K+  
Sbjct: 472 FDKAYALLAEMKQNGVS-------C------NDYTYNTLINGLCVVGRVCEVGEMLKRFE 518

Query: 123 VLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIE 182
             G   + + +N +I      G   +   + +QM A  + P++ T+   +         +
Sbjct: 519 TEGFVPTAMTYNSIINGFIKAGMMGSAFAVYQQMCAKGIPPNIVTYTSFIDGYCKTSCCD 578

Query: 183 GLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLI 242
             +K+ +D++   + P+  +Y  L          + A   +  + K     N S  +  I
Sbjct: 579 LALKMLNDVRCKGLRPDIAAYNSLIFGFCQEGNMSHALQVLVLMLKDGLLPNISVYNSFI 638

Query: 243 ILYGYLAKGKDLERIW-ATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQL 301
             Y  L   ++  R++   ++E  ++ + +Y   I+ F +   V+ A +L+ EM +   +
Sbjct: 639 TGYKNLKMMEEALRLYEKMIKEGIDLDTATYTTLIDGFSKDGNVTFALKLYSEMVAKGNI 698

Query: 302 KATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFK 360
                + ++    C+NG ID A  LL EM+    +PN + Y  L  G  ++  ++E F+
Sbjct: 699 PDHITFTALTHGLCRNGDIDDARKLLDEMNRLDIRPNVLMYNMLINGYLRNGKLQEAFR 757



 Score = 60.1 bits (144), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 91/492 (18%), Positives = 189/492 (38%), Gaps = 92/492 (18%)

Query: 43  KRALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQGEKLFCCIPKDY-----QNELL 97
           ++AL++ E  +R+    P ++ Y+ L+    +  G+ +     C   +D+      NE  
Sbjct: 299 RKALDIFEETLRDG-LVPTDVTYTVLIRGCTE-EGMPEKAYELCRQMRDHGLLPSTNE-- 354

Query: 98  YNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMK 157
           +N ++   L+  + K ++   K+M   G   ++  +N LI       + +   N+  +M 
Sbjct: 355 FNMVIKGLLNDKLWKDAVSLFKEMADSGIPDAF-TYNILIHWLCQRRKIREALNLWEKMN 413

Query: 158 ADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYT 217
              V P++ T+H L+     +  ++  +K+Y++M      PN V+Y  L   H     + 
Sbjct: 414 ETGVKPYIVTYHSLLLCYCVNGCMDEAVKLYTEMPGKGFTPNVVTYTTLMKGHINKAAFD 473

Query: 218 VAETYVEALEKSMTGNNWSTLDVLI---------------------------------IL 244
            A   +  ++++    N  T + LI                                 I+
Sbjct: 474 KAYALLAEMKQNGVSCNDYTYNTLINGLCVVGRVCEVGEMLKRFETEGFVPTAMTYNSII 533

Query: 245 YGYLAKGKDLERIWATVQEL------PNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSV 298
            G++  G  +   +A  Q++      PN+   +Y   I+ + + +    A ++  +++  
Sbjct: 534 NGFIKAGM-MGSAFAVYQQMCAKGIPPNI--VTYTSFIDGYCKTSCCDLALKMLNDVRCK 590

Query: 299 KQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEG 358
                   YNS+I  +C+ G +  A  +L  M  +G  PN   Y     G     ++EE 
Sbjct: 591 GLRPDIAAYNSLIFGFCQEGNMSHALQVLVLMLKDGLLPNISVYNSFITGYKNLKMMEEA 650

Query: 359 FKALE----------------------------LGMKLITTKKVRSSTPWLETTLSIIEI 390
            +  E                              +KL +    + + P   T  ++   
Sbjct: 651 LRLYEKMIKEGIDLDTATYTTLIDGFSKDGNVTFALKLYSEMVAKGNIPDHITFTALTHG 710

Query: 391 FAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKA-------KINDPNLLRRMILG 443
               GD+ +A  L +E+ + +      +YN LI  Y++        +++D  L R+++  
Sbjct: 711 LCRNGDIDDARKLLDEMNRLDIRPNVLMYNMLINGYLRNGKLQEAFRLHDEMLERKIM-- 768

Query: 444 GARPDAETYSLL 455
              PD  TY +L
Sbjct: 769 ---PDDTTYDIL 777



 Score = 50.1 bits (118), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 75/375 (20%), Positives = 137/375 (36%), Gaps = 36/375 (9%)

Query: 114 SLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMK 173
           +L  ++KM+  G       FN ++ +    GR +   +I  ++ A      V     LM 
Sbjct: 231 ALLVLRKMQDAGFVPWDFTFNSVVDVLVKGGRMEEALHIKDELLATGKKMSVVLATTLMH 290

Query: 174 IEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGN 233
                  +   + ++ +  R  + P +V+Y +L        +   A      +     G 
Sbjct: 291 GYCLQREVRKALDIFEETLRDGLVPTDVTYTVLIRGCTEEGMPEKAYELCRQMRDH--GL 348

Query: 234 NWSTLDVLIILYGYLAKG--KDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEEL 291
             ST +  +++ G L     KD   ++  + +     + +Y + I    +  ++  A  L
Sbjct: 349 LPSTNEFNMVIKGLLNDKLWKDAVSLFKEMADSGIPDAFTYNILIHWLCQRRKIREALNL 408

Query: 292 WLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFK 351
           W +M           Y+S++  YC NG +D+A  L  EM   G  PN +TY  L  G   
Sbjct: 409 WEKMNETGVKPYIVTYHSLLLCYCVNGCMDEAVKLYTEMPGKGFTPNVVTYTTLMKGHIN 468

Query: 352 SNLVEEGFKAL-----------------------------ELGMKLITTKKVRSSTPWLE 382
               ++ +  L                             E+G +++   +     P   
Sbjct: 469 KAAFDKAYALLAEMKQNGVSCNDYTYNTLINGLCVVGRVCEVG-EMLKRFETEGFVPTAM 527

Query: 383 TTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKINDPNL--LRRM 440
           T  SII  F + G +G+A  +++++           Y + I  Y K    D  L  L  +
Sbjct: 528 TYNSIINGFIKAGMMGSAFAVYQQMCAKGIPPNIVTYTSFIDGYCKTSCCDLALKMLNDV 587

Query: 441 ILGGARPDAETYSLL 455
              G RPD   Y+ L
Sbjct: 588 RCKGLRPDIAAYNSL 602


>gi|255547341|ref|XP_002514728.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223546332|gb|EEF47834.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 517

 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 66/260 (25%), Positives = 116/260 (44%), Gaps = 11/260 (4%)

Query: 98  YNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMK 157
           YN LV AC  +G +  +   + +M   G   + +++  LI    S  +     ++ RQMK
Sbjct: 189 YNVLVDACCRQGDVLRAKSLISEMVKKGIEPTVVIYTTLIHGLCSESKLMEAESMFRQMK 248

Query: 158 ADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYT 217
              V P++ T+++LM       N++  + +Y  M    ++PN V++ IL  A    R   
Sbjct: 249 DSGVFPNLYTYNVLMDGYCKTANVKQALHLYQGMLDDGLQPNVVTFGILIDALCKVRELL 308

Query: 218 VAETYVEALEKSMTGNNWSTLDVLIILY---GYLAKGKDLERIWATVQELPNVRSKSYVL 274
            A  +   + K     N    + LI  Y   G  ++  DL       +  P+V   +Y +
Sbjct: 309 AARRFFVQMAKFGVVPNVVVFNSLIDGYSKAGNCSEATDLLLEMEKFKISPDVF--TYSI 366

Query: 275 AIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLK------ 328
            I+   R+  V  A+++   M+       +  YNS+I  YCK G ++KA  + K      
Sbjct: 367 LIKNACRLGTVEEADDILKRMEKEGVPANSVVYNSLIDGYCKEGNMEKALEIFKATKFFS 426

Query: 329 EMSMNGCKPNAITYRHLALG 348
           +M  NG +P+A+ Y  +  G
Sbjct: 427 DMRRNGLRPDALAYAVMLQG 446



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 92/431 (21%), Positives = 177/431 (41%), Gaps = 46/431 (10%)

Query: 43  KRALEVMEWVIRERPYRP-KELD-YSYLLEFTIKNHGISQGEKLFC---CIPKDYQNELL 97
           ++AL+    V+++ P  P K+L  YS ++ +         G K++    C+ KD     L
Sbjct: 41  EQALDTFTSVLKQNPNNPTKKLHLYSAVIHYL-------TGAKVYPTARCLTKD-----L 88

Query: 98  YNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMK 157
              L+ +C  + V  L    + ++R  G   +  VF  LII  S  G    +   LR   
Sbjct: 89  IQTLLQSCTPRRVNSLVFNALSQLR--GSKFNPSVFGVLIIAFSEVG---LVDEALRVYL 143

Query: 158 ADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYT 217
                P V   + L+       + + + ++Y++M    + P  V+Y +L  A        
Sbjct: 144 KVGAFPAVQACNALLNGLLKKSSFDIMWELYNNMVSRRLFPTVVTYNVLVDACCRQGDVL 203

Query: 218 VAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGK--DLERIWATVQE---LPNVRSKSY 272
            A++ +  + K   G   + +    +++G  ++ K  + E ++  +++    PN+ +  Y
Sbjct: 204 RAKSLISEMVKK--GIEPTVVIYTTLIHGLCSESKLMEAESMFRQMKDSGVFPNLYT--Y 259

Query: 273 VLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSM 332
            + ++ + + A V +A  L+  M           +  +I   CK   +  A     +M+ 
Sbjct: 260 NVLMDGYCKTANVKQALHLYQGMLDDGLQPNVVTFGILIDALCKVRELLAARRFFVQMAK 319

Query: 333 NGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFA 392
            G  PN + +  L  G  K+    E   A +L   L+  +K + S P + T   +I+   
Sbjct: 320 FGVVPNVVVFNSLIDGYSKAGNCSE---ATDL---LLEMEKFKIS-PDVFTYSILIKNAC 372

Query: 393 EKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAK--------INDPNLLRRMILGG 444
             G V  A+++ + ++K      + VYN+LI  Y K                   M   G
Sbjct: 373 RLGTVEEADDILKRMEKEGVPANSVVYNSLIDGYCKEGNMEKALEIFKATKFFSDMRRNG 432

Query: 445 ARPDAETYSLL 455
            RPDA  Y+++
Sbjct: 433 LRPDALAYAVM 443


>gi|15221691|ref|NP_176501.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75169915|sp|Q9CAN0.1|PPR99_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g63130, mitochondrial; Flags: Precursor
 gi|12323261|gb|AAG51613.1|AC010795_17 unknown protein; 64081-65973 [Arabidopsis thaliana]
 gi|22136016|gb|AAM91590.1| unknown protein [Arabidopsis thaliana]
 gi|23197834|gb|AAN15444.1| unknown protein [Arabidopsis thaliana]
 gi|332195938|gb|AEE34059.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 630

 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 118/525 (22%), Positives = 211/525 (40%), Gaps = 90/525 (17%)

Query: 9   PVGSAFQSWMREGFPVHRGEIFHSINRLRKLQLNKRALEVMEWVIRERPYRPKELDYSYL 68
           P  S    W+R+   V       SINRL  L+L+  A+ +   +++ RP+ P  +++S L
Sbjct: 30  PSFSHCSFWVRDFSGVRYDYRKISINRLNDLKLDD-AVNLFGDMVKSRPF-PSIVEFSKL 87

Query: 69  LEFTIKNHG----ISQGEKLFCCIPKDYQNELLYNNL-----VIACL-DKGVIKLSLEYM 118
           L    K +     IS GE++        QN  + +NL     +I C   +  + L+L  +
Sbjct: 88  LSAIAKMNKFDLVISLGEQM--------QNLGISHNLYTYSILINCFCRRSQLSLALAVL 139

Query: 119 KKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQM---------------------- 156
            KM  LG+    +  N L+       R     +++ QM                      
Sbjct: 140 AKMMKLGYEPDIVTLNSLLNGFCHGNRISDAVSLVGQMVEMGYQPDSFTFNTLIHGLFRH 199

Query: 157 --KADKVA-----------PHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSY 203
              ++ VA           P + T+ I++       +I+  + +   M++ ++EP  V Y
Sbjct: 200 NRASEAVALVDRMVVKGCQPDLVTYGIVVNGLCKRGDIDLALSLLKKMEQGKIEPGVVIY 259

Query: 204 CILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQE 263
             +  A    +    A      ++      N  T + LI       +  D  R+ + + E
Sbjct: 260 NTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIE 319

Query: 264 L---PNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFI 320
               PNV + S +  I+AF +  ++  AE+L+ EM           Y+S+I+ +C +  +
Sbjct: 320 RKINPNVVTFSAL--IDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRL 377

Query: 321 DKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEG---------------------- 358
           D+A  + + M    C PN +TY  L  G  K+  V+EG                      
Sbjct: 378 DEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVDEGMELFREMSQRGLVGNTVTYTTL 437

Query: 359 ----FKALELGMKLITTKKVRSST--PWLETTLSIIEIFAEKGDVGNAENLFEELKKANY 412
               F+A E     I  K++ S    P + T   +++     G V  A  +FE L+++  
Sbjct: 438 IHGFFQARECDNAQIVFKQMVSDGVLPDIMTYSILLDGLCNNGKVETALVVFEYLQRSKM 497

Query: 413 TKYTFVYNTLIKAYVKA-KINDP-NLLRRMILGGARPDAETYSLL 455
               + YN +I+   KA K+ D  +L   + L G +P+  TY+ +
Sbjct: 498 EPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVVTYTTM 542



 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 80/366 (21%), Positives = 154/366 (42%), Gaps = 16/366 (4%)

Query: 96  LLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQ 155
           ++YN ++ A  +   +  +L    +M   G   + + +N LI    + GR      +L  
Sbjct: 257 VIYNTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSD 316

Query: 156 MKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARL 215
           M   K+ P+V TF  L+     +  +    K+Y +M +  ++P+  +Y  L     +   
Sbjct: 317 MIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDR 376

Query: 216 YTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPN----VRSKS 271
              A+   E +       N  T + LI   G+  K K ++      +E+        + +
Sbjct: 377 LDEAKHMFELMISKDCFPNVVTYNTLI--KGF-CKAKRVDEGMELFREMSQRGLVGNTVT 433

Query: 272 YVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMS 331
           Y   I  F +  +   A+ ++ +M S   L     Y+ ++   C NG ++ A  + + + 
Sbjct: 434 YTTLIHGFFQARECDNAQIVFKQMVSDGVLPDIMTYSILLDGLCNNGKVETALVVFEYLQ 493

Query: 332 MNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIF 391
            +  +P+  TY  +  G  K+  VE+G+        L  +  ++   P + T  +++  F
Sbjct: 494 RSKMEPDIYTYNIMIEGMCKAGKVEDGW-------DLFCSLSLKGVKPNVVTYTTMMSGF 546

Query: 392 AEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVK--AKINDPNLLRRMILGGARPDA 449
             KG    A+ LF E+K+      +  YNTLI+A+++   K     L+R M       DA
Sbjct: 547 CRKGLKEEADALFREMKEEGPLPDSGTYNTLIRAHLRDGDKAASAELIREMRSCRFVGDA 606

Query: 450 ETYSLL 455
            T  L+
Sbjct: 607 STIGLV 612


>gi|449520325|ref|XP_004167184.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
           mitochondrial-like [Cucumis sativus]
          Length = 605

 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 83/319 (26%), Positives = 137/319 (42%), Gaps = 31/319 (9%)

Query: 155 QMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVAR 214
           QM+   ++    T +IL+    N + +      ++ + R    PN V+Y  L     +  
Sbjct: 94  QMRLSGLSSDRCTLNILLNCLCNVNRLREGFAAFAGILRRGYSPNIVTYNTLIKGLCMEH 153

Query: 215 LYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKG----KDLERIWATVQELPNVRSK 270
             + A      ++K        T DV  + YG L KG     ++       QE+ N  S+
Sbjct: 154 RISEATRLFLRMQKL-----GCTPDV--VTYGTLIKGLCGTGNINIALKLHQEMLNDISR 206

Query: 271 ----------SYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFI 320
                     +Y + ++   ++ +   A++L+ EM++   + +   YNS+I  +C  G  
Sbjct: 207 YEINCKPNVITYNIIVDGLCKVGREDEAKQLFEEMKTQGMIPSIISYNSLIHGFCCAGKW 266

Query: 321 DKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPW 380
           +++  LL EM   G +P+ +T+  L        L +EG K +E   KL+         P 
Sbjct: 267 EESKRLLDEMLDQGLQPDMVTFNVLI-----DTLCKEG-KVIE-AKKLLGVMIESGIVPD 319

Query: 381 LETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKA-KINDP-NLLR 438
           L T  S+IE F   GD+ +A  LF  +           YN LI  Y K  K+ +   L  
Sbjct: 320 LVTYNSLIEGFCMVGDLNSARELFVSMPSKGCEPDVISYNVLINGYSKTLKVEEAMKLYN 379

Query: 439 RMILGGARPDAETY-SLLK 456
            M+L G RP+  TY SLLK
Sbjct: 380 EMLLVGKRPNVITYDSLLK 398



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 102/472 (21%), Positives = 182/472 (38%), Gaps = 99/472 (20%)

Query: 32  SINRLRKLQLNKRALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQGEKLFC----- 86
           ++NRLR+             ++R R Y P  + Y+ L++     H IS+  +LF      
Sbjct: 116 NVNRLRE------GFAAFAGILR-RGYSPNIVTYNTLIKGLCMEHRISEATRLFLRMQKL 168

Query: 87  -CIPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGR 145
            C P    + + Y  L+      G I ++L+  ++M    + IS    N           
Sbjct: 169 GCTP----DVVTYGTLIKGLCGTGNINIALKLHQEML---NDISRYEIN----------- 210

Query: 146 RKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKV---------YSDMKRSEV 196
                            P+V T++I+         ++GL KV         + +MK   +
Sbjct: 211 ---------------CKPNVITYNII---------VDGLCKVGREDEAKQLFEEMKTQGM 246

Query: 197 EPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILY---GYLAKGKD 253
            P+ +SY  L      A  +  ++  ++ +       +  T +VLI      G + + K 
Sbjct: 247 IPSIISYNSLIHGFCCAGKWEESKRLLDEMLDQGLQPDMVTFNVLIDTLCKEGKVIEAKK 306

Query: 254 LERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISV 313
           L  +      +P++ +  Y   IE F  +  ++ A EL++ M S         YN +I+ 
Sbjct: 307 LLGVMIESGIVPDLVT--YNSLIEGFCMVGDLNSARELFVSMPSKGCEPDVISYNVLING 364

Query: 314 YCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALEL--------- 364
           Y K   +++A  L  EM + G +PN ITY  L  G F +  V++  K   +         
Sbjct: 365 YSKTLKVEEAMKLYNEMLLVGKRPNVITYDSLLKGIFLAGKVDDAKKLFSVMKAHGIAEN 424

Query: 365 -------------------GMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFE 405
                               MKL T  K  +    +E    +I+   + G +  A  LFE
Sbjct: 425 SYTYGIFLDGLCKNDCLFEAMKLFTELKSSNFKLEIENLNCLIDGLCKAGKLETAWELFE 484

Query: 406 ELKKANYTKYTFVYNTLIKAYVK-AKINDPN-LLRRMILGGARPDAETYSLL 455
           +L    +      Y  +I  + +  +++  N L+++M   G  PD  TY+ L
Sbjct: 485 KLSNEGHEPNVVTYTIMIHGFCREGQVDKANVLIQKMEANGCTPDIITYNTL 536



 Score = 59.3 bits (142), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 54/236 (22%), Positives = 104/236 (44%), Gaps = 17/236 (7%)

Query: 131 LVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSD 190
           + +N LI      G   +   +   M +    P V ++++L+   +    +E  MK+Y++
Sbjct: 321 VTYNSLIEGFCMVGDLNSARELFVSMPSKGCEPDVISYNVLINGYSKTLKVEEAMKLYNE 380

Query: 191 MKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAK 250
           M      PN ++Y  L     +A     A+     ++      N  T       YG    
Sbjct: 381 MLLVGKRPNVITYDSLLKGIFLAGKVDDAKKLFSVMKAHGIAENSYT-------YGIFLD 433

Query: 251 G--KDLERIWATVQELPNVRSKSYVLAIE-------AFGRIAQVSRAEELWLEMQSVKQL 301
           G  K+ + ++  ++    ++S ++ L IE          +  ++  A EL+ ++ +    
Sbjct: 434 GLCKN-DCLFEAMKLFTELKSSNFKLEIENLNCLIDGLCKAGKLETAWELFEKLSNEGHE 492

Query: 302 KATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEE 357
                Y  +I  +C+ G +DKA+ L+++M  NGC P+ ITY  L  G ++SN +EE
Sbjct: 493 PNVVTYTIMIHGFCREGQVDKANVLIQKMEANGCTPDIITYNTLMRGFYESNKLEE 548


>gi|224130702|ref|XP_002328355.1| predicted protein [Populus trichocarpa]
 gi|222838070|gb|EEE76435.1| predicted protein [Populus trichocarpa]
          Length = 608

 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 88/402 (21%), Positives = 170/402 (42%), Gaps = 57/402 (14%)

Query: 98  YNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMK 157
           +N L+    ++G IK ++E   +M   GH  + + +N +I      G      ++ ++M+
Sbjct: 161 FNALINGLCNEGKIKEAVELFNEMVRRGHEPNVISYNTIINGLCKTGNTSMAVDVFKKME 220

Query: 158 ADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSY-------CILATAH 210
            +   P V T++ ++     D  +   M+  S+M    + PN  +Y       CIL   +
Sbjct: 221 QNGCKPDVVTYNTIIDSLCKDRLVNDAMEFLSEMLDRGIPPNVFTYNCMVHGFCILGQLN 280

Query: 211 AVARLYTVAETYVEALEKSMTGNNW--STLDVLIILYGYLAKG--KDLERIWATVQEL-- 264
              RL+           K M G +    T+ + I++ G   +G   +   ++ T+ E   
Sbjct: 281 EATRLF-----------KEMVGRDVMPDTVTLTILVDGLCKEGMVSEARLVFETMTEKGV 329

Query: 265 -PNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKA 323
            PN+ + + ++      R+  ++ A++++  M           YN +I+ +CK+  +D+A
Sbjct: 330 EPNISTYNALMDGYCLQRL--MNEAKKVFEIMIRQGCAPGVHSYNILINGFCKSRRMDEA 387

Query: 324 SGLLKEMSMNGCKPNAITYRHL------------ALGCFKS--------NLVE-----EG 358
             LL EM      P+ +TY  L            AL  FK         NLV      +G
Sbjct: 388 KSLLAEMYHKALNPDTVTYSTLMQGLCQFGRPKEALNIFKEMCSYGLLPNLVTYSILLDG 447

Query: 359 F---KALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKY 415
           F     L+  +KL+ + + +   P +     +IE     G +  A+ LF +L        
Sbjct: 448 FCKHGHLDEALKLLKSMQEKKLEPNIVHHTILIEGMFIAGKLEVAKELFSKLFADGIRPT 507

Query: 416 TFVYNTLIKAYVKAKINDP--NLLRRMILGGARPDAETYSLL 455
              Y  +IK  +K  ++D   +L R+M   G  P++ +Y+++
Sbjct: 508 IRTYTVMIKGLLKEGLSDEAYDLFRKMEDDGFLPNSCSYNVM 549



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 76/396 (19%), Positives = 163/396 (41%), Gaps = 25/396 (6%)

Query: 43  KRALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQGEKLF------CCIPKDYQNEL 96
           K A+E+   ++R R + P  + Y+ ++    K    S    +F       C P    + +
Sbjct: 175 KEAVELFNEMVR-RGHEPNVISYNTIINGLCKTGNTSMAVDVFKKMEQNGCKP----DVV 229

Query: 97  LYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQM 156
            YN ++ +     ++  ++E++ +M   G   +   +N ++      G+      + ++M
Sbjct: 230 TYNTIIDSLCKDRLVNDAMEFLSEMLDRGIPPNVFTYNCMVHGFCILGQLNEATRLFKEM 289

Query: 157 KADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLY 216
               V P   T  IL+     +  +     V+  M    VEPN  +Y  L   + + RL 
Sbjct: 290 VGRDVMPDTVTLTILVDGLCKEGMVSEARLVFETMTEKGVEPNISTYNALMDGYCLQRLM 349

Query: 217 TVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQEL----PNVRSKSY 272
             A+   E + +        + ++LI       K + ++   + + E+     N  + +Y
Sbjct: 350 NEAKKVFEIMIRQGCAPGVHSYNILI---NGFCKSRRMDEAKSLLAEMYHKALNPDTVTY 406

Query: 273 VLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSM 332
              ++   +  +   A  ++ EM S   L     Y+ ++  +CK+G +D+A  LLK M  
Sbjct: 407 STLMQGLCQFGRPKEALNIFKEMCSYGLLPNLVTYSILLDGFCKHGHLDEALKLLKSMQE 466

Query: 333 NGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFA 392
              +PN + +  L  G F +         LE+  +L +        P + T   +I+   
Sbjct: 467 KKLEPNIVHHTILIEGMFIAG-------KLEVAKELFSKLFADGIRPTIRTYTVMIKGLL 519

Query: 393 EKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVK 428
           ++G    A +LF +++   +   +  YN +I+ +++
Sbjct: 520 KEGLSDEAYDLFRKMEDDGFLPNSCSYNVMIQGFLQ 555



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 70/315 (22%), Positives = 134/315 (42%), Gaps = 24/315 (7%)

Query: 151 NILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAH 210
           +IL +M    + P  STF+ L+    N+  I+  ++++++M R   EPN +SY  +    
Sbjct: 144 SILGKMFKLGIHPTASTFNALINGLCNEGKIKEAVELFNEMVRRGHEPNVISYNTIINGL 203

Query: 211 AVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQEL------ 264
                 ++A    + +E++    +  T + +I     L K + +      + E+      
Sbjct: 204 CKTGNTSMAVDVFKKMEQNGCKPDVVTYNTII---DSLCKDRLVNDAMEFLSEMLDRGIP 260

Query: 265 PNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKAS 324
           PNV   +Y   +  F  + Q++ A  L+ EM     +  T     ++   CK G + +A 
Sbjct: 261 PNVF--TYNCMVHGFCILGQLNEATRLFKEMVGRDVMPDTVTLTILVDGLCKEGMVSEAR 318

Query: 325 GLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETT 384
            + + M+  G +PN  TY  L  G     L+ E  K  E+ ++       +   P + + 
Sbjct: 319 LVFETMTEKGVEPNISTYNALMDGYCLQRLMNEAKKVFEIMIR-------QGCAPGVHSY 371

Query: 385 LSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKINDP----NLLRRM 440
             +I  F +   +  A++L  E+        T  Y+TL++     +   P    N+ + M
Sbjct: 372 NILINGFCKSRRMDEAKSLLAEMYHKALNPDTVTYSTLMQGL--CQFGRPKEALNIFKEM 429

Query: 441 ILGGARPDAETYSLL 455
              G  P+  TYS+L
Sbjct: 430 CSYGLLPNLVTYSIL 444


>gi|356506793|ref|XP_003522160.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At4g17915-like [Glycine max]
          Length = 461

 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 76/324 (23%), Positives = 141/324 (43%), Gaps = 20/324 (6%)

Query: 141 SSPGRRKTIPN----ILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEV 196
           SS  + K IPN    I+  ++   V P V T++ L+        ++    V + M  + +
Sbjct: 21  SSLCKAKQIPNAETAIVDGIRL-GVLPDVVTYNTLIDAYCRFATLDVAYSVLARMHDAGI 79

Query: 197 EPNEVSYCILATAHAVARLYTVA-ETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLE 255
            P+ VS+  L +      L++ + + + E L++ +  + WS  ++L+     L K  +  
Sbjct: 80  PPDVVSFNTLISGAVRKSLFSKSLDLFDEMLKRGINPDAWSH-NILMNCLFQLGKPDEAN 138

Query: 256 RIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYC 315
           R++  +     V   +Y + I    +   V  A  L+  +Q    +     YN++I+  C
Sbjct: 139 RVFKEIVLRDEVHPATYNIMINGLCKNGYVGNALSLFRNLQRHGFVPQVLTYNALINGLC 198

Query: 316 KNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVR 375
           K   +  A  +LKE    G +PNA+TY  +   CF+  L EEG + L          ++R
Sbjct: 199 KARRLKDARRVLKEFGETGNEPNAVTYTTVMTCCFRCRLFEEGLEILS---------EMR 249

Query: 376 SSTPWLE--TTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVK-AKIN 432
           S     +     ++I    + G +  AE + E +  +        YNTLI  Y +  +++
Sbjct: 250 SLGFTFDGFAYCTVIAAMIKTGRMQEAEEIVEMMVSSGVRPDLVSYNTLINLYCRQGRLD 309

Query: 433 DPNLLRRMILG-GARPDAETYSLL 455
           D   L   I G G   D  T++++
Sbjct: 310 DALRLLDEIEGEGLECDQYTHTII 333



 Score = 49.7 bits (117), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 49/230 (21%), Positives = 92/230 (40%), Gaps = 41/230 (17%)

Query: 258 WATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKN 317
           WA ++   ++ +K   + + +  +  Q+  AE   ++   +  L     YN++I  YC+ 
Sbjct: 4   WAPLKS--SLSTKLLNITVSSLCKAKQIPNAETAIVDGIRLGVLPDVVTYNTLIDAYCRF 61

Query: 318 GFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSS 377
             +D A  +L  M   G  P+ +++  L  G  + +L     K+L+L  +++  K+  + 
Sbjct: 62  ATLDVAYSVLARMHDAGIPPDVVSFNTLISGAVRKSLFS---KSLDLFDEML--KRGINP 116

Query: 378 TPWLETTLS--------------------------------IIEIFAEKGDVGNAENLFE 405
             W    L                                 +I    + G VGNA +LF 
Sbjct: 117 DAWSHNILMNCLFQLGKPDEANRVFKEIVLRDEVHPATYNIMINGLCKNGYVGNALSLFR 176

Query: 406 ELKKANYTKYTFVYNTLIKAYVKA-KINDP-NLLRRMILGGARPDAETYS 453
            L++  +      YN LI    KA ++ D   +L+     G  P+A TY+
Sbjct: 177 NLQRHGFVPQVLTYNALINGLCKARRLKDARRVLKEFGETGNEPNAVTYT 226



 Score = 44.7 bits (104), Expect = 0.093,   Method: Compositional matrix adjust.
 Identities = 55/275 (20%), Positives = 105/275 (38%), Gaps = 41/275 (14%)

Query: 151 NILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAH 210
           ++ R ++     P V T++ L+        ++   +V  +   +  EPN V+Y  + T  
Sbjct: 173 SLFRNLQRHGFVPQVLTYNALINGLCKARRLKDARRVLKEFGETGNEPNAVTYTTVMTCC 232

Query: 211 AVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSK 270
              RL+   E  +E L +  +              G+   G                   
Sbjct: 233 FRCRLF---EEGLEILSEMRS-------------LGFTFDGF------------------ 258

Query: 271 SYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEM 330
           +Y   I A  +  ++  AEE+   M S         YN++I++YC+ G +D A  LL E+
Sbjct: 259 AYCTVIAAMIKTGRMQEAEEIVEMMVSSGVRPDLVSYNTLINLYCRQGRLDDALRLLDEI 318

Query: 331 SMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEI 390
              G + +  T+  +  G  K+   +   + L     L     + +   +L+        
Sbjct: 319 EGEGLECDQYTHTIIVDGLCKAGNFDGAQRHLNYMNSLGFGSNLVAFNCFLDG------- 371

Query: 391 FAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKA 425
             + G + +A  LFE ++  +   YT V + L +A
Sbjct: 372 LGKAGHIDHALRLFEVMEVKDSFTYTIVVHNLCRA 406


>gi|414875530|tpg|DAA52661.1| TPA: hypothetical protein ZEAMMB73_467633 [Zea mays]
          Length = 987

 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 97/413 (23%), Positives = 167/413 (40%), Gaps = 55/413 (13%)

Query: 93  QNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNI 152
           +NE  Y  L+    +   ++ +L  +  M   G S++  ++  LI      GR      +
Sbjct: 247 RNEYSYTILIQGLYEARCVREALVLVFMMVQDGCSLNLHMYTLLIKGLCKEGRIHDARGL 306

Query: 153 LRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAV 212
           L +M    V P V T++ ++        ++  + + + M+++   P++ +Y  L      
Sbjct: 307 LDEMPLRGVVPSVWTYNAMIDGYCKSGRMKDALGIKALMEQNGCNPDDWTYNSLIYGLCG 366

Query: 213 ARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSKSY 272
            +L    E    A+ +  T    + +    ++ GY       ERI   ++   N+ S + 
Sbjct: 367 GKLDEAEELLNGAIARGFTP---TVITFTNLINGYCKA----ERIDDALRVKSNMISSNC 419

Query: 273 VLAIEAFGRIAQV-------SRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASG 325
            L ++A+G +  V         A+E   EM +         Y S+I  YCK G +  A  
Sbjct: 420 KLDLQAYGVLINVLIKKCRLKEAKETLNEMFANGLAPNVVIYTSIIDGYCKVGMVGAALE 479

Query: 326 LLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTL 385
           + K M   GC PNA TY  L  G     L+++  K L   M LIT  +    TP +    
Sbjct: 480 VFKLMEHEGCHPNAWTYGSLIYG-----LIQD--KKLHKAMALITKMQEDGITPGVIAYT 532

Query: 386 SIIEIFAEKGDVGNAENLFEELKKANYT---------------------KYTFV------ 418
           ++I+   +K +  NA  LFE ++K   T                      Y+F+      
Sbjct: 533 TLIQGQCKKHEFDNAFRLFEMMEKNGLTPDEQAYNVLTDALCKSGRAEEAYSFLVRKGVV 592

Query: 419 -----YNTLIKAYVKAKIND--PNLLRRMILGGARPDAETYSLLKLAEQFQKK 464
                Y +L+  + KA   D    L+ +M+  G + D  TYS+L  A   QKK
Sbjct: 593 LTKVTYTSLVDGFSKAGNTDFAAVLIEKMVNEGCKADLYTYSVLLQALCKQKK 645



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 87/418 (20%), Positives = 158/418 (37%), Gaps = 68/418 (16%)

Query: 94  NELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNIL 153
           N ++Y +++      G++  +LE  K M   G   +   +  LI       +      ++
Sbjct: 457 NVVIYTSIIDGYCKVGMVGAALEVFKLMEHEGCHPNAWTYGSLIYGLIQDKKLHKAMALI 516

Query: 154 RQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHA-- 211
            +M+ D + P V  +  L++ +   H  +   +++  M+++ + P+E +Y +L  A    
Sbjct: 517 TKMQEDGITPGVIAYTTLIQGQCKKHEFDNAFRLFEMMEKNGLTPDEQAYNVLTDALCKS 576

Query: 212 ---------VARLYTVAE--TYVEALEKSMTGNNWSTLDVLI----------ILYGY--- 247
                    + R   V    TY   ++      N     VLI           LY Y   
Sbjct: 577 GRAEEAYSFLVRKGVVLTKVTYTSLVDGFSKAGNTDFAAVLIEKMVNEGCKADLYTYSVL 636

Query: 248 ---LAKGKDLERIWATVQELPNVRSK----SYVLAIEAFGRIAQVSRAEELWLEMQSVKQ 300
              L K K L    + + ++     K    +Y + I    +  +   A+ L+ EM S   
Sbjct: 637 LQALCKQKKLNEALSILDQMTVSGVKCNIVAYTIIISEMIKEGKHDHAKSLFNEMISSGH 696

Query: 301 LKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFK 360
             +   Y   IS YCK G I++A  L+ EM  +G  P+ +TY     GC     ++  F 
Sbjct: 697 KPSATTYTVFISSYCKIGQIEEAEHLIGEMERDGVTPDVVTYHIFINGCGHMGYMDRAFS 756

Query: 361 ALE---------------------LGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGN 399
            L+                     L M LI    + +S  W    L+ +           
Sbjct: 757 TLKRMVDASCEPNCWTYWLLLKHFLKMSLINAHYIDTSGMWNWIELNTV----------- 805

Query: 400 AENLFEELKKANYTKYTFVYNTLIKAYVKA-KINDPNLLRRMILGGA-RPDAETYSLL 455
              L E + K         Y+++I  + KA ++ +  +L   +LG A  P+ E Y++L
Sbjct: 806 -WQLLERMMKHGLNPTVVTYSSIIAGFCKATRLEEACVLLDHMLGKAISPNEEIYTML 862



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 70/280 (25%), Positives = 112/280 (40%), Gaps = 17/280 (6%)

Query: 182 EGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVL 241
           E + K+YS + +  + P+ V+Y  +  A+       +A  Y   L +S  G    T    
Sbjct: 161 EYMGKLYSHLVQEGLLPDTVTYNTMIMAYCKKGSLAIAHRYFCLLRES--GMQMDTYTCN 218

Query: 242 IILYGYLAKGKDLERIWATVQELPNVRSK----SYVLAIEAFGRIAQVSRAEELWLEMQS 297
            +L GY  +  DL +    +  +P +  +    SY + I+       V  A  L   M  
Sbjct: 219 ALLLGY-CRTSDLRKACWLLMMMPLMGCRRNEYSYTILIQGLYEARCVREALVLVFMMVQ 277

Query: 298 VKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEE 357
                    Y  +I   CK G I  A GLL EM + G  P+  TY  +  G  KS  +++
Sbjct: 278 DGCSLNLHMYTLLIKGLCKEGRIHDARGLLDEMPLRGVVPSVWTYNAMIDGYCKSGRMKD 337

Query: 358 GFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTF 417
                 LG+K +  +   +   W   +L I  +   K D   AE L        +T    
Sbjct: 338 A-----LGIKALMEQNGCNPDDWTYNSL-IYGLCGGKLD--EAEELLNGAIARGFTPTVI 389

Query: 418 VYNTLIKAYVKA-KINDPNLLR-RMILGGARPDAETYSLL 455
            +  LI  Y KA +I+D   ++  MI    + D + Y +L
Sbjct: 390 TFTNLINGYCKAERIDDALRVKSNMISSNCKLDLQAYGVL 429



 Score = 55.5 bits (132), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 68/338 (20%), Positives = 139/338 (41%), Gaps = 54/338 (15%)

Query: 151 NILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAH 210
           +IL QM    V  ++  + I++     +   +    ++++M  S  +P+  +Y +  +++
Sbjct: 651 SILDQMTVSGVKCNIVAYTIIISEMIKEGKHDHAKSLFNEMISSGHKPSATTYTVFISSY 710

Query: 211 AVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSK 270
                   AE  +  +E+     +  T  + I   G++     ++R ++T++ + +   +
Sbjct: 711 CKIGQIEEAEHLIGEMERDGVTPDVVTYHIFINGCGHMGY---MDRAFSTLKRMVDASCE 767

Query: 271 ----SYVLAIEAFGRIAQV------SRAEELWLEMQSVKQL----------KATEQYNSV 310
               +Y L ++ F +++ +      +     W+E+ +V QL               Y+S+
Sbjct: 768 PNCWTYWLLLKHFLKMSLINAHYIDTSGMWNWIELNTVWQLLERMMKHGLNPTVVTYSSI 827

Query: 311 ISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGC-----------FKSNLVEEGF 359
           I+ +CK   +++A  LL  M      PN   Y  L   C           F ++++E GF
Sbjct: 828 IAGFCKATRLEEACVLLDHMLGKAISPNEEIYTMLIKCCCDIKLFGKDVSFVTDMIEFGF 887

Query: 360 KALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVY 419
           +                  P LE+   +I    ++GD   A++LF +L   +Y      +
Sbjct: 888 Q------------------PQLESYHYLIVGLCDEGDYDRAKSLFCDLLGMDYNHNEVAW 929

Query: 420 NTLIKAYVKAKIND--PNLLRRMILGGARPDAETYSLL 455
             L    +KA   D    LL  M     R D+E+YS+L
Sbjct: 930 KILNDGLLKAGHVDFCSQLLAAMDNRHCRIDSESYSML 967


>gi|449508067|ref|XP_004163208.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Cucumis sativus]
          Length = 830

 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 101/467 (21%), Positives = 185/467 (39%), Gaps = 54/467 (11%)

Query: 33  INRLRKLQLNKRALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQGEKLFCCIPKDY 92
           IN L K    + A  +M  + R   Y P    Y+ L+    +NH +     +F  + KD 
Sbjct: 209 INILCKKGRVQEAKLIMSHIFRYDAY-PNAFTYTSLILGHCRNHNLDLAFAMFDRMVKDG 267

Query: 93  --QNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIP 150
              N + Y+ L+     +G ++ +++ +++M   G   +   +   ++     G      
Sbjct: 268 CDPNSVTYSTLINGLCSEGRLEEAMDMLEEMVQKGIEPTVYTYTIPLVSLCDAGCSSEAV 327

Query: 151 NILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAH 210
            +L +MK     P++ TF  L+   + D   E  + +Y  M    + P  V+Y  L    
Sbjct: 328 ELLGKMKKRGCVPNIQTFTALISGLSRDGKFEIAIGLYHKMLADGLVPTTVTYNALINQL 387

Query: 211 AVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQEL------ 264
            V   +  A T  + +    +  +  T + +I  +  +    D+++      ++      
Sbjct: 388 CVEGRFETAFTIFKWMLSHGSLPSTQTYNEIIKCFCLMG---DIQKAMVIFDKMLKAGSS 444

Query: 265 PNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATE-QYNSVISVYCKNGFIDKA 323
           PNV   +Y   I  + +   ++ A  L LE+     LK     Y  +IS + + G ++ A
Sbjct: 445 PNV--ITYNTLIYGYCKQGNLNNAMRL-LEIMKGNGLKPDAWTYTELISGFSRGGKLEHA 501

Query: 324 SGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSST----- 378
           + L   M  +G  PN +TY  +  G F    V++   AL L  K++ +  + SS      
Sbjct: 502 TSLFYGMMEHGISPNHVTYTAIIDGYFNLAKVDD---ALALFWKMVESGNLPSSQTYNVM 558

Query: 379 --------------------------PWLETTLSIIEIFAEKGDVGNAENLFEELKKANY 412
                                     P + T  S I+     G  G A  +F E++K NY
Sbjct: 559 ISGFSKTNSISEAENFCGKMVKQGLLPNVITYTSFIDGLCRNGRTGLAFKIFHEMEKRNY 618

Query: 413 TKYTFVYNTLIKAYVK-AKINDP---NLLRRMILGGARPDAETYSLL 455
               + Y++LI    +  +  D    NLL R+   G  P+ +TY+ L
Sbjct: 619 FPNLYTYSSLIYGLCQEGRAEDAEMYNLLARLTHYGCEPNVDTYTTL 665



 Score = 72.0 bits (175), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 83/361 (22%), Positives = 141/361 (39%), Gaps = 45/361 (12%)

Query: 98  YNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMK 157
           +  L+I      ++ L+ +   KM   G   S L FN +I +    GR +    I+  + 
Sbjct: 170 FTTLLIQLGKFDMVDLARDMYIKMLNSGIRPSLLTFNTMINILCKKGRVQEAKLIMSHIF 229

Query: 158 ADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATA-HAVARLY 216
                P+  T+  L+     +HN++    ++  M +   +PN V+Y  L     +  RL 
Sbjct: 230 RYDAYPNAFTYTSLILGHCRNHNLDLAFAMFDRMVKDGCDPNSVTYSTLINGLCSEGRLE 289

Query: 217 TVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSKSYVLAI 276
              +   E ++K +                                  P V   +Y + +
Sbjct: 290 EAMDMLEEMVQKGIE---------------------------------PTVY--TYTIPL 314

Query: 277 EAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCK 336
            +       S A EL  +M+    +   + + ++IS   ++G  + A GL  +M  +G  
Sbjct: 315 VSLCDAGCSSEAVELLGKMKKRGCVPNIQTFTALISGLSRDGKFEIAIGLYHKMLADGLV 374

Query: 337 PNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGD 396
           P  +TY  L      + L  EG    E    +        S P  +T   II+ F   GD
Sbjct: 375 PTTVTYNALI-----NQLCVEG--RFETAFTIFKWMLSHGSLPSTQTYNEIIKCFCLMGD 427

Query: 397 VGNAENLFEELKKANYTKYTFVYNTLIKAYVK-AKINDP-NLLRRMILGGARPDAETYSL 454
           +  A  +F+++ KA  +     YNTLI  Y K   +N+   LL  M   G +PDA TY+ 
Sbjct: 428 IQKAMVIFDKMLKAGSSPNVITYNTLIYGYCKQGNLNNAMRLLEIMKGNGLKPDAWTYTE 487

Query: 455 L 455
           L
Sbjct: 488 L 488



 Score = 45.8 bits (107), Expect = 0.040,   Method: Compositional matrix adjust.
 Identities = 37/187 (19%), Positives = 81/187 (43%), Gaps = 9/187 (4%)

Query: 271 SYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEM 330
           S+   +   G+   V  A +++++M +     +   +N++I++ CK G + +A  ++  +
Sbjct: 169 SFTTLLIQLGKFDMVDLARDMYIKMLNSGIRPSLLTFNTMINILCKKGRVQEAKLIMSHI 228

Query: 331 SMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEI 390
                 PNA TY  L LG  +++ ++  F   +  +K           P   T  ++I  
Sbjct: 229 FRYDAYPNAFTYTSLILGHCRNHNLDLAFAMFDRMVK-------DGCDPNSVTYSTLING 281

Query: 391 FAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKINDP--NLLRRMILGGARPD 448
              +G +  A ++ EE+ +       + Y   + +   A  +     LL +M   G  P+
Sbjct: 282 LCSEGRLEEAMDMLEEMVQKGIEPTVYTYTIPLVSLCDAGCSSEAVELLGKMKKRGCVPN 341

Query: 449 AETYSLL 455
            +T++ L
Sbjct: 342 IQTFTAL 348


>gi|356513139|ref|XP_003525271.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g21222-like [Glycine max]
          Length = 621

 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 73/316 (23%), Positives = 130/316 (41%), Gaps = 27/316 (8%)

Query: 125 GHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGL 184
           GH  + + +  L+   +   R K+IP +L ++  + + P     + ++   ++   ++  
Sbjct: 90  GHKPTLITYTTLVAALTRQKRFKSIPALLSKVADNGMKPDSILLNAMINAFSDSGKVDEA 149

Query: 185 MKVYSDMKRSEVEPNEVSYCILATAHA-VARLYTVAETYVEALEKSMTGNNWSTLDVLII 243
           MK++  MK    +P   +Y  L      V R Y   +      +      N  T ++LI 
Sbjct: 150 MKIFQKMKEYGCKPTTSTYNTLIKGFGIVGRPYESMKLLEMMGQDENVKPNDRTYNILIQ 209

Query: 244 LYGYLAKGKDLERIWATVQEL------PNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQS 297
            +      K LE  W  + ++      P+V +  Y     A+ +  +  +AE L L+MQ 
Sbjct: 210 AW---CTKKKLEEAWNVLHKMVASGIQPDVVT--YNTMARAYAQNGETEKAERLILKMQY 264

Query: 298 VKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALG---CFKSNL 354
            K          +IS YCK G + +A   L  M   G  PN + +  L  G      +N 
Sbjct: 265 NKVKPNERTCGIIISGYCKEGNMTEALRFLYRMKELGVHPNPVVFNSLIKGYLDATDTNG 324

Query: 355 VEEGFKAL-ELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYT 413
           V+E    + E G+K           P + T  +I+  ++  G + N E +F ++ KA   
Sbjct: 325 VDEALTLMEEFGIK-----------PDVVTFSTIMNAWSSAGLMDNCEEIFNDMVKAGIE 373

Query: 414 KYTFVYNTLIKAYVKA 429
                Y+ L K YV+A
Sbjct: 374 PDIHAYSILAKGYVRA 389



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 53/258 (20%), Positives = 105/258 (40%), Gaps = 5/258 (1%)

Query: 94  NELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNIL 153
           N+  YN L+ A   K  ++ +   + KM   G     + +N +    +  G  +    ++
Sbjct: 200 NDRTYNILIQAWCTKKKLEEAWNVLHKMVASGIQPDVVTYNTMARAYAQNGETEKAERLI 259

Query: 154 RQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVA 213
            +M+ +KV P+  T  I++     + N+   ++    MK   V PN V +  L   +  A
Sbjct: 260 LKMQYNKVKPNERTCGIIISGYCKEGNMTEALRFLYRMKELGVHPNPVVFNSLIKGYLDA 319

Query: 214 RLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQEL---PNVRSK 270
                 +  +  +E+     +  T   ++  +       + E I+  + +    P++ + 
Sbjct: 320 TDTNGVDEALTLMEEFGIKPDVVTFSTIMNAWSSAGLMDNCEEIFNDMVKAGIEPDIHA- 378

Query: 271 SYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEM 330
            Y +  + + R  Q  +AE L   M           + ++IS +C  G +D+A  L ++M
Sbjct: 379 -YSILAKGYVRAGQPRKAESLLTSMSKYGVQTNVVIFTTIISGWCAAGKMDRAFSLCEKM 437

Query: 331 SMNGCKPNAITYRHLALG 348
              G  PN  TY  L  G
Sbjct: 438 HEMGTSPNLKTYETLIWG 455



 Score = 40.8 bits (94), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 38/155 (24%), Positives = 67/155 (43%), Gaps = 10/155 (6%)

Query: 307 YNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGM 366
           Y ++++   +         LL +++ NG KP++I    +      S  V+E        M
Sbjct: 98  YTTLVAALTRQKRFKSIPALLSKVADNGMKPDSILLNAMINAFSDSGKVDEA-------M 150

Query: 367 KLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEEL-KKANYTKYTFVYNTLIKA 425
           K+    K     P   T  ++I+ F   G    +  L E + +  N       YN LI+A
Sbjct: 151 KIFQKMKEYGCKPTTSTYNTLIKGFGIVGRPYESMKLLEMMGQDENVKPNDRTYNILIQA 210

Query: 426 Y-VKAKINDP-NLLRRMILGGARPDAETYSLLKLA 458
           +  K K+ +  N+L +M+  G +PD  TY+ +  A
Sbjct: 211 WCTKKKLEEAWNVLHKMVASGIQPDVVTYNTMARA 245


>gi|356524104|ref|XP_003530672.1| PREDICTED: pentatricopeptide repeat-containing protein At1g05670,
           mitochondrial-like [Glycine max]
          Length = 742

 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 84/354 (23%), Positives = 154/354 (43%), Gaps = 30/354 (8%)

Query: 115 LEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKI 174
           L+ M++++  G   +   +N +I      GR      +LR MK  ++ P    +  L+  
Sbjct: 307 LKLMEELQRKGLKPNQYTYNSIISFLCKTGRVVEAEQVLRVMKNQRIFPDNVVYTTLISG 366

Query: 175 EANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAET---YVEALEKSMT 231
                N+    K++ +MKR ++ P+ V+Y   +  H + +   V E    + E L K + 
Sbjct: 367 FGKSGNVSVEYKLFDEMKRKKIVPDFVTYT--SMIHGLCQAGKVVEARKLFSEMLSKGLK 424

Query: 232 GNNWSTLDVLIILYGYLAKGKDLERIWATVQEL-----PNVRSKSYVLAIEAFGRIAQVS 286
            +    +    ++ GY   G+  E      Q +     PNV   +Y   ++   +  +V 
Sbjct: 425 PDE---VTYTALIDGYCKAGEMKEAFSLHNQMVEKGLTPNV--VTYTALVDGLCKCGEVD 479

Query: 287 RAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLA 346
            A EL  EM           YN++I+  CK G I++A  L++EM + G  P+ ITY  + 
Sbjct: 480 IANELLHEMSEKGLQPNVCTYNALINGLCKVGNIEQAVKLMEEMDLAGFFPDTITYTTIM 539

Query: 347 LGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEE 406
               K   + E  KA EL ++++  K ++   P + T   ++  F   G + + E L + 
Sbjct: 540 DAYCK---MGEMAKAHEL-LRIMLDKGLQ---PTIVTFNVLMNGFCMSGMLEDGERLIKW 592

Query: 407 LKKANYTKYTFVYNTLIKAY-----VKAKINDPNLLRRMILGGARPDAETYSLL 455
           +           +N+L+K Y     ++A I    + + M   G  PD  TY++L
Sbjct: 593 MLDKGIMPNATTFNSLMKQYCIRNNMRATI---EIYKGMHAQGVVPDTNTYNIL 643



 Score = 68.9 bits (167), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 66/263 (25%), Positives = 115/263 (43%), Gaps = 14/263 (5%)

Query: 198 PNEVSYCILATAHA-VARLYTVAETYVEALEKSMTGNNWSTLDVLIIL--YGYLAKGKDL 254
           P+ VSY ++   +  V +L  V +   E   K +  N ++   ++  L   G + + + +
Sbjct: 285 PDVVSYSVIVDGYCQVEQLGKVLKLMEELQRKGLKPNQYTYNSIISFLCKTGRVVEAEQV 344

Query: 255 ERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVY 314
            R+    +  P+  +  Y   I  FG+   VS   +L+ EM+  K +     Y S+I   
Sbjct: 345 LRVMKNQRIFPD--NVVYTTLISGFGKSGNVSVEYKLFDEMKRKKIVPDFVTYTSMIHGL 402

Query: 315 CKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKV 374
           C+ G + +A  L  EM   G KP+ +TY  L  G  K+  ++E F    L  +++     
Sbjct: 403 CQAGKVVEARKLFSEMLSKGLKPDEVTYTALIDGYCKAGEMKEAF---SLHNQMVE---- 455

Query: 375 RSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVK-AKIND 433
           +  TP + T  ++++   + G+V  A  L  E+ +         YN LI    K   I  
Sbjct: 456 KGLTPNVVTYTALVDGLCKCGEVDIANELLHEMSEKGLQPNVCTYNALINGLCKVGNIEQ 515

Query: 434 P-NLLRRMILGGARPDAETYSLL 455
              L+  M L G  PD  TY+ +
Sbjct: 516 AVKLMEEMDLAGFFPDTITYTTI 538



 Score = 66.2 bits (160), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 75/343 (21%), Positives = 143/343 (41%), Gaps = 18/343 (5%)

Query: 94  NELLYNNLV-IACLDKGVIKLS--LEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIP 150
           N+  YN+++   C    V++    L  MK  R+   ++   V+  LI      G      
Sbjct: 321 NQYTYNSIISFLCKTGRVVEAEQVLRVMKNQRIFPDNV---VYTTLISGFGKSGNVSVEY 377

Query: 151 NILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAH 210
            +  +MK  K+ P   T+  ++        +    K++S+M    ++P+EV+Y  L   +
Sbjct: 378 KLFDEMKRKKIVPDFVTYTSMIHGLCQAGKVVEARKLFSEMLSKGLKPDEVTYTALIDGY 437

Query: 211 AVA-RLYTVAETYVEALEKSMTGN--NWSTLDVLIILYGYLAKGKDLERIWATVQELPNV 267
             A  +      + + +EK +T N   ++ L   +   G +    +L    +     PNV
Sbjct: 438 CKAGEMKEAFSLHNQMVEKGLTPNVVTYTALVDGLCKCGEVDIANELLHEMSEKGLQPNV 497

Query: 268 RSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLL 327
              +Y   I    ++  + +A +L  EM        T  Y +++  YCK G + KA  LL
Sbjct: 498 --CTYNALINGLCKVGNIEQAVKLMEEMDLAGFFPDTITYTTIMDAYCKMGEMAKAHELL 555

Query: 328 KEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSI 387
           + M   G +P  +T+  L  G   S ++E+       G +LI     +   P   T  S+
Sbjct: 556 RIMLDKGLQPTIVTFNVLMNGFCMSGMLED-------GERLIKWMLDKGIMPNATTFNSL 608

Query: 388 IEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAK 430
           ++ +  + ++     +++ +        T  YN LIK + KA+
Sbjct: 609 MKQYCIRNNMRATIEIYKGMHAQGVVPDTNTYNILIKGHCKAR 651



 Score = 46.2 bits (108), Expect = 0.036,   Method: Compositional matrix adjust.
 Identities = 84/428 (19%), Positives = 180/428 (42%), Gaps = 59/428 (13%)

Query: 40  QLNKRALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQGEKLFCCIPKDYQNELLY- 98
           QL K  L++ME + R +  +P +  Y+ ++ F  K   + + E++     +  +N+ ++ 
Sbjct: 302 QLGK-VLKLMEELQR-KGLKPNQYTYNSIISFLCKTGRVVEAEQVL----RVMKNQRIFP 355

Query: 99  NNLVIACLDKGVIK---LSLEY-----MKKMRVLGHSISYLVFNRLIILNSSPGRRKTIP 150
           +N+V   L  G  K   +S+EY     MK+ +++   ++Y     +I      G+     
Sbjct: 356 DNVVYTTLISGFGKSGNVSVEYKLFDEMKRKKIVPDFVTY---TSMIHGLCQAGKVVEAR 412

Query: 151 NILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAH 210
            +  +M +  + P   T+  L+        ++    +++ M    + PN V+Y  L    
Sbjct: 413 KLFSEMLSKGLKPDEVTYTALIDGYCKAGEMKEAFSLHNQMVEKGLTPNVVTYTALVDGL 472

Query: 211 AVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQEL------ 264
                  +A   +  + +     N  T + LI     L K  ++E+    ++E+      
Sbjct: 473 CKCGEVDIANELLHEMSEKGLQPNVCTYNALI---NGLCKVGNIEQAVKLMEEMDLAGFF 529

Query: 265 PNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKAT-EQYNSVISVYCKNGFIDKA 323
           P+  + +Y   ++A+ ++ ++++A EL L +   K L+ T   +N +++ +C +G ++  
Sbjct: 530 PD--TITYTTIMDAYCKMGEMAKAHEL-LRIMLDKGLQPTIVTFNVLMNGFCMSGMLEDG 586

Query: 324 SGLLKEMSMNGCKPNAITYRHLALG-CFKSNL--VEEGFKALELGMKLITTK-------- 372
             L+K M   G  PNA T+  L    C ++N+    E +K +     +  T         
Sbjct: 587 ERLIKWMLDKGIMPNATTFNSLMKQYCIRNNMRATIEIYKGMHAQGVVPDTNTYNILIKG 646

Query: 373 --KVRS-STPWL--------------ETTLSIIEIFAEKGDVGNAENLFEELKKANYTKY 415
             K R+    W                +  S+I+ F ++     A  LFEE++   +   
Sbjct: 647 HCKARNMKEAWFLHKEMVEKGFSLTAASYNSLIKGFYKRKKFEEARKLFEEMRTHGFIAE 706

Query: 416 TFVYNTLI 423
             +Y+  +
Sbjct: 707 KEIYDIFV 714


>gi|255539805|ref|XP_002510967.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223550082|gb|EEF51569.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 774

 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 94/397 (23%), Positives = 163/397 (41%), Gaps = 39/397 (9%)

Query: 69  LEFTIKNHGISQGEKLFCCIPKDYQNELLYNNLVIACLD-KGVIKLSLEYMKKMRVLGHS 127
           L   IK  GI+  E LF CI K Y    L        LD KGV      +          
Sbjct: 124 LLLQIKEEGIAFRESLFICIMKYYGRANLPGQATRMLLDMKGVYCCEPTFK--------- 174

Query: 128 ISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKV 187
            SY V   +++  + P       N+  +M +  V P V TF ++MK     + ++    +
Sbjct: 175 -SYNVVLDILVSANCP---SVAANVFYEMLSKGVIPTVYTFGVVMKALCMVNEVDNACSL 230

Query: 188 YSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVL-IILYG 246
             DM +    PN V Y  L   HA+++   V E  ++ LE+         +D    ++YG
Sbjct: 231 LRDMTKHGCVPNSVVYQTL--IHALSKRDRVNEA-LKLLEEMFLMGCLPDVDTFNDVIYG 287

Query: 247 Y-----LAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQL 301
                 + +G  L          PN    +Y + +    R+ +V  A+ L  ++ +   +
Sbjct: 288 LCRLNRIHEGAKLVDRMLFRGFTPN--DITYGVLMNGLCRVGKVDEAQVLLNKVPTPNDV 345

Query: 302 KATEQYNSVISVYCKNGFIDKASGLL-KEMSMNGCKPNAITYRHLALGCFKSNLVEEGFK 360
                +  +I+ Y K+G +D+A+  L  +M  NGC+P+  T+  L  G  K  L+     
Sbjct: 346 ----HFTILINGYVKSGRLDEANAFLYDKMIKNGCRPDVFTFNTLIHGLCKKGLMGS--- 398

Query: 361 ALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYN 420
                + ++        TP L T  ++++ F +K  +  A  +  E+    +      YN
Sbjct: 399 ----AVDMVNDMSANGCTPNLITYTTLLDGFCKKNQLEEAGYVLNEMSAKGFELNIMGYN 454

Query: 421 TLIKAYVK-AKINDP-NLLRRMILGGARPDAETYSLL 455
            L++A  K  K+    ++L  M   G +PD  T++ L
Sbjct: 455 VLLRALCKNGKVPKALDMLGEMSDKGCKPDIFTFNTL 491



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 98/435 (22%), Positives = 176/435 (40%), Gaps = 23/435 (5%)

Query: 28  EIFHSINRLRKLQLNKRALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQGEKLFCC 87
           ++ + + RL ++    + ++ M +    R + P ++ Y  L+    +   + + + L   
Sbjct: 283 DVIYGLCRLNRIHEGAKLVDRMLF----RGFTPNDITYGVLMNGLCRVGKVDEAQVLLNK 338

Query: 88  IPKDYQNELLYNNLVIACLDKGVIKLSLEYM-KKMRVLGHSISYLVFNRLIILNSSPGRR 146
           +P    N++ +  L+   +  G +  +  ++  KM   G       FN LI      G  
Sbjct: 339 VPT--PNDVHFTILINGYVKSGRLDEANAFLYDKMIKNGCRPDVFTFNTLIHGLCKKGLM 396

Query: 147 KTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCIL 206
            +  +++  M A+   P++ T+  L+      + +E    V ++M     E N + Y +L
Sbjct: 397 GSAVDMVNDMSANGCTPNLITYTTLLDGFCKKNQLEEAGYVLNEMSAKGFELNIMGYNVL 456

Query: 207 ATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQE--L 264
               A+ +   V +      E S  G          +++G L K    E   A  ++  L
Sbjct: 457 L--RALCKNGKVPKALDMLGEMSDKGCKPDIFTFNTLIFG-LCKVDRKEDALALYRDMLL 513

Query: 265 PNV--RSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDK 322
             V   + +Y   I AF R   +  A +L  +M           YN +I  +CK G  +K
Sbjct: 514 DGVIANTVTYNTLIHAFLRGGAIQEALKLVNDMLFRGCPLDEITYNGLIKAFCKLGATEK 573

Query: 323 ASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLE 382
           A GL  EM      P+ I+   L  G  +   V +   ALEL   +I     R   P + 
Sbjct: 574 ALGLFDEMVRKDLVPSNISCNLLINGLCR---VGKVCNALELLRDMIH----RGLAPDVV 626

Query: 383 TTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKINDPN--LLRRM 440
           T  S+I    + G++  A NLF +L+          YNTLI  + +A + D    LL R 
Sbjct: 627 TYNSLINGLCKMGNIREAFNLFNKLQAEGIQPDAITYNTLICWHCRAGMFDDAYLLLLRG 686

Query: 441 ILGGARPDAETYSLL 455
           +     P+  T+ +L
Sbjct: 687 VENAFIPNDVTWYIL 701



 Score = 47.8 bits (112), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 78/329 (23%), Positives = 131/329 (39%), Gaps = 28/329 (8%)

Query: 60  PKELDYSYLLE-FTIKNHGISQGEKLFCCIPKDYQ-NELLYNNLVIACLDKGVIKLSLEY 117
           P  + Y+ LL+ F  KN     G  L     K ++ N + YN L+ A    G +  +L+ 
Sbjct: 413 PNLITYTTLLDGFCKKNQLEEAGYVLNEMSAKGFELNIMGYNVLLRALCKNGKVPKALDM 472

Query: 118 MKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEAN 177
           + +M   G       FN LI       R++    + R M  D V  +  T++ L+     
Sbjct: 473 LGEMSDKGCKPDIFTFNTLIFGLCKVDRKEDALALYRDMLLDGVIANTVTYNTLIHAFLR 532

Query: 178 DHNIEGLMKVYSDMKRSEVEPNEVSY-------CILATAHAVARLYTVAETYVEALEKSM 230
              I+  +K+ +DM       +E++Y       C L        L+       E + K +
Sbjct: 533 GGAIQEALKLVNDMLFRGCPLDEITYNGLIKAFCKLGATEKALGLFD------EMVRKDL 586

Query: 231 TGNNWSTLDVLI---ILYGYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSR 287
             +N S  ++LI      G +    +L R        P+V   +Y   I    ++  +  
Sbjct: 587 VPSNISC-NLLINGLCRVGKVCNALELLRDMIHRGLAPDV--VTYNSLINGLCKMGNIRE 643

Query: 288 AEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLAL 347
           A  L+ ++Q+         YN++I  +C+ G  D A  LL     N   PN +T+  L  
Sbjct: 644 AFNLFNKLQAEGIQPDAITYNTLICWHCRAGMFDDAYLLLLRGVENAFIPNDVTWYILV- 702

Query: 348 GCFKSNLVEEGFKALELGMKLITTKKVRS 376
               SN ++E  K  E G+   T K + S
Sbjct: 703 ----SNFIKEIGK--ENGISFGTAKVIPS 725


>gi|229914885|gb|ACQ90610.1| putative PPR repeat protein [Eutrema halophilum]
          Length = 1023

 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 77/311 (24%), Positives = 135/311 (43%), Gaps = 19/311 (6%)

Query: 118 MKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEAN 177
           MK+ RV   + S    N L+   +  G+   +    + M      P V T++I++     
Sbjct: 89  MKRCRVFPKTRSC---NGLLHKFARLGKTDGMKRFFKDMIGAGSKPTVFTYNIMIDCMCK 145

Query: 178 DHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHA-VARLYTVAETYVEALEKSMTGN--- 233
           + +IE    ++ +MK   + P+ V+Y  +   +  V RL      + E   KSM+     
Sbjct: 146 EGDIEAASGLFEEMKFRGLIPDTVTYNSMIDGYGKVGRLDDTVYFFEEM--KSMSCEPDV 203

Query: 234 -NWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELW 292
             ++TL      +G L KG +  R        PNV   SY   ++AF +   + +A + +
Sbjct: 204 ITYNTLINCFCKFGKLPKGLEFFREMKQSGLKPNV--VSYSTLVDAFCKEDMMQQALKFY 261

Query: 293 LEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKS 352
           ++M+ +  +     Y S++  YCK G +  A  L  EMS  G + N +TY  L  G    
Sbjct: 262 VDMRRLGLVPNEHTYTSLVDAYCKIGNLSDAFRLADEMSQVGVEWNVVTYTALIDGLCDV 321

Query: 353 NLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANY 412
             ++E   A EL  K++T   +    P L +  ++I  F +  ++  A  L +E+K    
Sbjct: 322 ERIKE---AEELFGKMVTAGVI----PNLASYTALIHGFVKAKNMDRALELLDEMKGRGI 374

Query: 413 TKYTFVYNTLI 423
                +Y T I
Sbjct: 375 KPDLLLYGTFI 385



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 83/349 (23%), Positives = 139/349 (39%), Gaps = 35/349 (10%)

Query: 22  FPVHRG--EIFHSINRLRKLQLNKRALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGIS 79
           FP  R    + H   RL K    KR  + M         +P    Y+ +++   K   I 
Sbjct: 95  FPKTRSCNGLLHKFARLGKTDGMKRFFKDMIGA----GSKPTVFTYNIMIDCMCKEGDIE 150

Query: 80  QGEKLF------CCIPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVF 133
               LF        IP    + + YN+++      G +  ++ + ++M+ +      + +
Sbjct: 151 AASGLFEEMKFRGLIP----DTVTYNSMIDGYGKVGRLDDTVYFFEEMKSMSCEPDVITY 206

Query: 134 NRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKR 193
           N LI      G+        R+MK   + P+V ++  L+     +  ++  +K Y DM+R
Sbjct: 207 NTLINCFCKFGKLPKGLEFFREMKQSGLKPNVVSYSTLVDAFCKEDMMQQALKFYVDMRR 266

Query: 194 SEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKG-K 252
             + PNE +Y  L  A+   ++  +++ +  A E S  G  W+     ++ Y  L  G  
Sbjct: 267 LGLVPNEHTYTSLVDAY--CKIGNLSDAFRLADEMSQVGVEWN-----VVTYTALIDGLC 319

Query: 253 DLERI---------WATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKA 303
           D+ERI           T   +PN+   SY   I  F +   + RA EL  EM+       
Sbjct: 320 DVERIKEAEELFGKMVTAGVIPNL--ASYTALIHGFVKAKNMDRALELLDEMKGRGIKPD 377

Query: 304 TEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKS 352
              Y + I   C    I+ A  ++ EM   G K N   Y  L    FKS
Sbjct: 378 LLLYGTFIWSLCGLEKIEAAKVVMNEMQEKGIKANTFIYTTLMDAYFKS 426



 Score = 68.6 bits (166), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 66/302 (21%), Positives = 126/302 (41%), Gaps = 22/302 (7%)

Query: 163 PHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETY 222
           P    F  L  +   +   E  ++ +S MKR  V P   S   L   H  ARL       
Sbjct: 61  PGFGVFDALFSVLIEEDMFEEALQCFSKMKRCRVFPKTRSCNGLL--HKFARLGKTDG-- 116

Query: 223 VEALEKSMTG-NNWSTLDVLIILYGYLAKGKDLERIWATVQEL------PNVRSKSYVLA 275
           ++   K M G  +  T+    I+   + K  D+E      +E+      P+  + +Y   
Sbjct: 117 MKRFFKDMIGAGSKPTVFTYNIMIDCMCKEGDIEAASGLFEEMKFRGLIPD--TVTYNSM 174

Query: 276 IEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGC 335
           I+ +G++ ++      + EM+S+        YN++I+ +CK G + K     +EM  +G 
Sbjct: 175 IDGYGKVGRLDDTVYFFEEMKSMSCEPDVITYNTLINCFCKFGKLPKGLEFFREMKQSGL 234

Query: 336 KPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKG 395
           KPN ++Y  L     K +++++        +K     +     P   T  S+++ + + G
Sbjct: 235 KPNVVSYSTLVDAFCKEDMMQQ-------ALKFYVDMRRLGLVPNEHTYTSLVDAYCKIG 287

Query: 396 DVGNAENLFEELKKANYTKYTFVYNTLIKAYVKA-KINDP-NLLRRMILGGARPDAETYS 453
           ++ +A  L +E+ +         Y  LI       +I +   L  +M+  G  P+  +Y+
Sbjct: 288 NLSDAFRLADEMSQVGVEWNVVTYTALIDGLCDVERIKEAEELFGKMVTAGVIPNLASYT 347

Query: 454 LL 455
            L
Sbjct: 348 AL 349


>gi|255582955|ref|XP_002532248.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223528066|gb|EEF30142.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 521

 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 59/209 (28%), Positives = 100/209 (47%), Gaps = 7/209 (3%)

Query: 160 KVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVE-PNEVSYCILATA-HAVARLYT 217
           KV P+   F+IL+K      ++E  ++V  +MK+S    PN ++Y  L        RL  
Sbjct: 194 KVRPNTCIFNILVKHHCKSGDLESALEVMHEMKKSRRSYPNVITYSTLIDGLCGNGRLKE 253

Query: 218 VAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQE---LPNVRSKSYVL 274
             E + E + K     +  T  VLI  + +  K     +I   ++     PNV +  Y +
Sbjct: 254 AIELFEEMVSKDQILPDALTYSVLIKGFCHGGKADRARKIMEFMRSNGCDPNVFN--YSV 311

Query: 275 AIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNG 334
            +  F +  ++  A+E++ EM+S      T  Y ++I+ +C  G ID+A  LLKEM+   
Sbjct: 312 LMNGFCKEGRLEEAKEVFDEMKSSGLKPDTVGYTTLINCFCGVGRIDEAMELLKEMTEMK 371

Query: 335 CKPNAITYRHLALGCFKSNLVEEGFKALE 363
           CK +A+T+  L  G  +    +E  + LE
Sbjct: 372 CKADAVTFNVLLKGLCREGRFDEALRMLE 400



 Score = 52.0 bits (123), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 52/221 (23%), Positives = 84/221 (38%), Gaps = 50/221 (22%)

Query: 243 ILYGYLAKGKDLERIWATVQELPNVRSK-----SYVLAIEAFGRIAQVSRAEELWLEMQS 297
           IL  +  K  DLE     + E+   R       +Y   I+      ++  A EL+ EM S
Sbjct: 204 ILVKHHCKSGDLESALEVMHEMKKSRRSYPNVITYSTLIDGLCGNGRLKEAIELFEEMVS 263

Query: 298 VKQ-LKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVE 356
             Q L     Y+ +I  +C  G  D+A  +++ M  NGC PN   Y  L  G        
Sbjct: 264 KDQILPDALTYSVLIKGFCHGGKADRARKIMEFMRSNGCDPNVFNYSVLMNG-------- 315

Query: 357 EGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYT 416
                                             F ++G +  A+ +F+E+K +     T
Sbjct: 316 ----------------------------------FCKEGRLEEAKEVFDEMKSSGLKPDT 341

Query: 417 FVYNTLIKAYVK-AKINDP-NLLRRMILGGARPDAETYSLL 455
             Y TLI  +    +I++   LL+ M     + DA T+++L
Sbjct: 342 VGYTTLINCFCGVGRIDEAMELLKEMTEMKCKADAVTFNVL 382



 Score = 52.0 bits (123), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 57/288 (19%), Positives = 123/288 (42%), Gaps = 16/288 (5%)

Query: 132 VFNRLIILNSSPGRRKTIPNILRQMKADKVA-PHVSTFHILMKIEANDHNIEGLMKVYSD 190
           +FN L+  +   G  ++   ++ +MK  + + P+V T+  L+     +  ++  ++++ +
Sbjct: 201 IFNILVKHHCKSGDLESALEVMHEMKKSRRSYPNVITYSTLIDGLCGNGRLKEAIELFEE 260

Query: 191 M-KRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLA 249
           M  + ++ P+ ++Y +L            A   +E +  +  G + +  +  +++ G+  
Sbjct: 261 MVSKDQILPDALTYSVLIKGFCHGGKADRARKIMEFMRSN--GCDPNVFNYSVLMNGFCK 318

Query: 250 KGKDLERIWATVQELPNVRSK----SYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATE 305
           +G+ LE       E+ +   K     Y   I  F  + ++  A EL  EM  +K      
Sbjct: 319 EGR-LEEAKEVFDEMKSSGLKPDTVGYTTLINCFCGVGRIDEAMELLKEMTEMKCKADAV 377

Query: 306 QYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELG 365
            +N ++   C+ G  D+A  +L+ ++  G   N  +YR +      + L ++G   LE  
Sbjct: 378 TFNVLLKGLCREGRFDEALRMLENLAYEGVYLNKGSYRIVL-----NFLCQKG--ELEKS 430

Query: 366 MKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYT 413
             L+     R   P   T+  ++    E G V NA      L +  +T
Sbjct: 431 CALLGLMLSRGFVPHYATSNELLVCLCEAGMVDNAVTALFGLTQMGFT 478


>gi|115453829|ref|NP_001050515.1| Os03g0569800 [Oryza sativa Japonica Group]
 gi|113548986|dbj|BAF12429.1| Os03g0569800 [Oryza sativa Japonica Group]
          Length = 773

 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 82/377 (21%), Positives = 163/377 (43%), Gaps = 24/377 (6%)

Query: 87  CIPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRR 146
           C P    N + +N L+      G+ +   E + +M   G +    ++  +I      G  
Sbjct: 247 CAP----NIVTFNTLIGYLCRNGLFERVHEVLAQMSEHGCTPDIRMYATIIDGICKEGHL 302

Query: 147 KTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCIL 206
           +    IL +M +  + P+V  ++ ++K   +    +   ++ S+M + +   ++V++ IL
Sbjct: 303 EVANEILNRMPSYGLKPNVVCYNTVLKGLCSAERWKEAEELLSEMFQKDCPLDDVTFNIL 362

Query: 207 ATAHAVARLYTVAETYVEALEKSMT-GNNWSTLDVLIILYGYLAKGKDLERI-----WAT 260
                   L    +  +E LE+ ++ G     +    ++ G+  +G   E +      ++
Sbjct: 363 VDFFCQNGL---VDRVIELLEQMLSHGCMPDVITYTTVINGFCKEGLIDEAVMLLKSMSS 419

Query: 261 VQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFI 320
               PN  + SY + ++      +   AEEL  +M           +N++I+  CK G +
Sbjct: 420 CGCKPN--TVSYTIVLKGLCSAGRWVDAEELMSQMIQQGCPPNPVTFNTLINFLCKKGLV 477

Query: 321 DKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPW 380
           ++A  LLK+M +NGC P+ I+Y  +  G  K+   EE   ALEL + ++  K +  +T  
Sbjct: 478 EQAIELLKQMLVNGCSPDLISYSTVIDGLGKAGKTEE---ALEL-LNVMVNKGISPNTII 533

Query: 381 LETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKINDP--NLLR 438
                SI    + +G V     +F+ +K         +YN +I +  K    D   +   
Sbjct: 534 YS---SIACALSREGRVNKVIQMFDNIKDTTIRSDAVLYNAVISSLCKRWETDRAIDFFA 590

Query: 439 RMILGGARPDAETYSLL 455
            M+  G  P+  TY++L
Sbjct: 591 YMVSNGCMPNESTYTML 607



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 84/371 (22%), Positives = 153/371 (41%), Gaps = 27/371 (7%)

Query: 100 NLVI-ACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKA 158
           NLV+ A  ++G +  ++  ++K+   G     + +N ++       R   +  ++ +M  
Sbjct: 185 NLVLNAICEQGCVDEAVGLLRKLAFFGCEADIVSYNAVLKGLCMAKRWGDVEELMDEMVR 244

Query: 159 DKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTV 218
              AP++ TF+ L+     +   E + +V + M      P+   Y  +            
Sbjct: 245 VDCAPNIVTFNTLIGYLCRNGLFERVHEVLAQMSEHGCTPDIRMYATIIDG-------IC 297

Query: 219 AETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPN--------VRSK 270
            E ++E   + +       L   ++ Y  + KG      W   +EL +        +   
Sbjct: 298 KEGHLEVANEILNRMPSYGLKPNVVCYNTVLKGLCSAERWKEAEELLSEMFQKDCPLDDV 357

Query: 271 SYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEM 330
           ++ + ++ F +   V R  EL  +M S   +     Y +VI+ +CK G ID+A  LLK M
Sbjct: 358 TFNILVDFFCQNGLVDRVIELLEQMLSHGCMPDVITYTTVINGFCKEGLIDEAVMLLKSM 417

Query: 331 SMNGCKPNAITYRHLALG-CFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIE 389
           S  GCKPN ++Y  +  G C     V+    A EL  ++I     +   P   T  ++I 
Sbjct: 418 SSCGCKPNTVSYTIVLKGLCSAGRWVD----AEELMSQMIQ----QGCPPNPVTFNTLIN 469

Query: 390 IFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKINDP--NLLRRMILGGARP 447
              +KG V  A  L +++     +     Y+T+I    KA   +    LL  M+  G  P
Sbjct: 470 FLCKKGLVEQAIELLKQMLVNGCSPDLISYSTVIDGLGKAGKTEEALELLNVMVNKGISP 529

Query: 448 DAETYSLLKLA 458
           +   YS +  A
Sbjct: 530 NTIIYSSIACA 540



 Score = 49.3 bits (116), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 65/267 (24%), Positives = 94/267 (35%), Gaps = 42/267 (15%)

Query: 131 LVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSD 190
           + FN L+      G    +  +L QM +    P V T+  ++     +  I+  + +   
Sbjct: 357 VTFNILVDFFCQNGLVDRVIELLEQMLSHGCMPDVITYTTVINGFCKEGLIDEAVMLLKS 416

Query: 191 MKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAK 250
           M     +PN VSY I+      A  +  AE  +  + +     N  T + LI    +L K
Sbjct: 417 MSSCGCKPNTVSYTIVLKGLCSAGRWVDAEELMSQMIQQGCPPNPVTFNTLI---NFLCK 473

Query: 251 GKDLER-IWATVQELPNVRSK---SYVLAIEAFGRIAQVSRAEELWLEM----------- 295
              +E+ I    Q L N  S    SY   I+  G+  +   A EL   M           
Sbjct: 474 KGLVEQAIELLKQMLVNGCSPDLISYSTVIDGLGKAGKTEEALELLNVMVNKGISPNTII 533

Query: 296 ------------------QSVKQLKATE------QYNSVISVYCKNGFIDKASGLLKEMS 331
                             Q    +K T        YN+VIS  CK    D+A      M 
Sbjct: 534 YSSIACALSREGRVNKVIQMFDNIKDTTIRSDAVLYNAVISSLCKRWETDRAIDFFAYMV 593

Query: 332 MNGCKPNAITYRHLALGCFKSNLVEEG 358
            NGC PN  TY  L  G     L +E 
Sbjct: 594 SNGCMPNESTYTMLIKGLASEGLAKEA 620


>gi|410110137|gb|AFV61148.1| pentatricopeptide repeat-containing protein 123, partial [Lippia
           rubella]
          Length = 440

 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 75/322 (23%), Positives = 150/322 (46%), Gaps = 22/322 (6%)

Query: 98  YNNLVIACLDKGVIKLSLEYMKKM---RVLGHSISYLVFNRLIILNSSPGRRKTIPNILR 154
           Y+ L+     +G+   +L +++KM   RV G  + Y   + LI L+          +I  
Sbjct: 18  YSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLY---SNLIELSRKLCDYSKAISIFS 74

Query: 155 QMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVAR 214
           ++K     P +  ++ ++ +            + S+MK + V PN  SY  L T +   +
Sbjct: 75  RLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMKTAGVMPNTTSYSTLLTMYVENK 134

Query: 215 LYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQEL---PNVRSKS 271
            +  A +    + +     + +T +++I +YG L+  K+ ++++  ++++   P+V S +
Sbjct: 135 KFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLSMAKEADKLFWGMRKMGIEPSVVSFN 194

Query: 272 YVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMS 331
            +L +  +G       A  L+  MQ     +    YNS+I +Y K    +KA+ L++EM 
Sbjct: 195 TLLRV--YGDAELFGEAIHLFRLMQRKNIEQTVVTYNSMIMIYGKTLEHEKANNLIQEMQ 252

Query: 332 MNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTL--SIIE 389
             G +PN+ITY         S ++    K  +L    +  +K+RSS   ++  L  ++I 
Sbjct: 253 SRGIEPNSITY---------STIISIWGKVGKLDRAAMLFQKLRSSGVEIDQILFQTMIV 303

Query: 390 IFAEKGDVGNAENLFEELKKAN 411
            +   G V +A+ L  ELK+ +
Sbjct: 304 AYERAGLVAHAKRLLHELKRPD 325



 Score = 40.4 bits (93), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 35/134 (26%), Positives = 55/134 (41%), Gaps = 11/134 (8%)

Query: 325 GLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPW-LET 383
           GL  EM      P+  TY  L     K  L +     L+        K  +   P  L  
Sbjct: 1   GLFDEMRQRALSPDRYTYSTLITHFGKEGLFDAALSWLQ--------KMEQDRVPGDLVL 52

Query: 384 TLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKI--NDPNLLRRMI 441
             ++IE+  +  D   A ++F  LK++ +T     YN +I  + KAK+     +L+  M 
Sbjct: 53  YSNLIELSRKLCDYSKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMK 112

Query: 442 LGGARPDAETYSLL 455
             G  P+  +YS L
Sbjct: 113 TAGVMPNTTSYSTL 126



 Score = 38.9 bits (89), Expect = 5.6,   Method: Compositional matrix adjust.
 Identities = 32/126 (25%), Positives = 57/126 (45%), Gaps = 11/126 (8%)

Query: 307 YNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGM 366
           Y+++I+ + K G  D A   L++M  +    + + Y         SNL+E   K  +   
Sbjct: 18  YSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLY---------SNLIELSRKLCDYSK 68

Query: 367 KLITTKKVRSS--TPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIK 424
            +    +++ S  TP L    ++I +F +      A +L  E+K A     T  Y+TL+ 
Sbjct: 69  AISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMKTAGVMPNTTSYSTLLT 128

Query: 425 AYVKAK 430
            YV+ K
Sbjct: 129 MYVENK 134


>gi|410110069|gb|AFV61114.1| pentatricopeptide repeat-containing protein 123, partial [Aloysia
           lycioides]
          Length = 429

 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 74/322 (22%), Positives = 149/322 (46%), Gaps = 22/322 (6%)

Query: 98  YNNLVIACLDKGVIKLSLEYMKKM---RVLGHSISYLVFNRLIILNSSPGRRKTIPNILR 154
           Y+ L+     +G+   +L +++KM   RV G  + Y   + LI L+          +I  
Sbjct: 14  YSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLY---SNLIELSRKLCDYSKAISIFS 70

Query: 155 QMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVAR 214
           ++K     P +  ++ ++ +            + S+M+ + V PN  SY  L T +   +
Sbjct: 71  RLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVMPNTASYSTLLTMYVENK 130

Query: 215 LYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQEL---PNVRSKS 271
            +  A +    + +     + +T +++I +YG L   K+ ++++  ++++   PNV S +
Sbjct: 131 KFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYN 190

Query: 272 YVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMS 331
            +L +  +G       A  L+  MQ    ++    YNS++ +Y K    +KA+ L++EM 
Sbjct: 191 TLLRV--YGDAELFGEAIHLFRLMQRKNIVQNVVTYNSMMMIYGKTLEHEKANNLIQEMQ 248

Query: 332 MNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTL--SIIE 389
             G +PN+ITY         S ++    K  +L    +  +K+RSS   ++  L  ++I 
Sbjct: 249 NRGIEPNSITY---------STIISIWGKVGKLDRAAMLFQKLRSSGVEIDQVLYQTMIV 299

Query: 390 IFAEKGDVGNAENLFEELKKAN 411
            +   G V +A+ L  ELK  +
Sbjct: 300 AYERAGLVAHAKRLLHELKSPD 321



 Score = 42.4 bits (98), Expect = 0.52,   Method: Compositional matrix adjust.
 Identities = 53/244 (21%), Positives = 97/244 (39%), Gaps = 45/244 (18%)

Query: 190 DMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLA 249
           +M++  + P+  +Y  L T      L+  A ++++ +E+     +       ++LY  L 
Sbjct: 1   EMRQRALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGD-------LVLYSNLI 53

Query: 250 KGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNS 309
              +L R           +   Y  AI  F R+ +     +L               YN+
Sbjct: 54  ---ELSR-----------KLCDYSKAISIFSRLKRSGFTPDLV-------------AYNA 86

Query: 310 VISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLI 369
           +I+V+ K     +A  L+ EM   G  PN  +Y  L        +  E  K LE    L 
Sbjct: 87  MINVFGKAKLFREARSLISEMRTAGVMPNTASYSTLL------TMYVENKKFLE---ALS 137

Query: 370 TTKKVRSSTPWLETTLS--IIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYV 427
              ++R     L+ T    +I+++ + G    A+ LF  ++K         YNTL++ Y 
Sbjct: 138 VFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYG 197

Query: 428 KAKI 431
            A++
Sbjct: 198 DAEL 201


>gi|449463386|ref|XP_004149415.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Cucumis sativus]
          Length = 830

 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 101/467 (21%), Positives = 185/467 (39%), Gaps = 54/467 (11%)

Query: 33  INRLRKLQLNKRALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQGEKLFCCIPKDY 92
           IN L K    + A  +M  + R   Y P    Y+ L+    +NH +     +F  + KD 
Sbjct: 209 INILCKKGRVQEAKLIMSHIFRYDAY-PNAFTYTSLILGHCRNHNLDLAFAMFDRMVKDG 267

Query: 93  --QNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIP 150
              N + Y+ L+     +G ++ +++ +++M   G   +   +   ++     G      
Sbjct: 268 CDPNSVTYSTLINGLCSEGRLEEAMDMLEEMVQKGIEPTVYTYTIPLVSLCDAGCSSEAV 327

Query: 151 NILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAH 210
            +L +MK     P++ TF  L+   + D   E  + +Y  M    + P  V+Y  L    
Sbjct: 328 ELLGKMKKRGCVPNIQTFTALISGLSRDGKFEIAIGLYHKMLADGLVPTTVTYNALINQL 387

Query: 211 AVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQEL------ 264
            V   +  A T  + +    +  +  T + +I  +  +    D+++      ++      
Sbjct: 388 CVEGRFETAFTIFKWMLSHGSLPSTQTYNEIIKCFCLMG---DIQKAMVIFDKMLKAGSS 444

Query: 265 PNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATE-QYNSVISVYCKNGFIDKA 323
           PNV   +Y   I  + +   ++ A  L LE+     LK     Y  +IS + + G ++ A
Sbjct: 445 PNV--ITYNTLIYGYCKQGNLNNAMRL-LEIMKGNGLKPDAWTYTELISGFSRGGKLEHA 501

Query: 324 SGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSST----- 378
           + L   M  +G  PN +TY  +  G F    V++   AL L  K++ +  + SS      
Sbjct: 502 TSLFYGMMEHGISPNHVTYTAIIDGYFNLAKVDD---ALALFWKMVESGNLPSSQTYNVM 558

Query: 379 --------------------------PWLETTLSIIEIFAEKGDVGNAENLFEELKKANY 412
                                     P + T  S I+     G  G A  +F E++K NY
Sbjct: 559 ISGFSKTNSISEAENFCGKMVKQGLLPNVITYTSFIDGLCRNGRTGLAFKIFHEMEKRNY 618

Query: 413 TKYTFVYNTLIKAYVK-AKINDP---NLLRRMILGGARPDAETYSLL 455
               + Y++LI    +  +  D    NLL R+   G  P+ +TY+ L
Sbjct: 619 FPNLYTYSSLIYGLCQEGRAEDAEMYNLLARLTHYGCEPNVDTYTTL 665



 Score = 71.6 bits (174), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 83/361 (22%), Positives = 141/361 (39%), Gaps = 45/361 (12%)

Query: 98  YNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMK 157
           +  L+I      ++ L+ +   KM   G   S L FN +I +    GR +    I+  + 
Sbjct: 170 FTTLLIQLGKFDMVDLARDMYIKMLNSGIRPSLLTFNTMINILCKKGRVQEAKLIMSHIF 229

Query: 158 ADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATA-HAVARLY 216
                P+  T+  L+     +HN++    ++  M +   +PN V+Y  L     +  RL 
Sbjct: 230 RYDAYPNAFTYTSLILGHCRNHNLDLAFAMFDRMVKDGCDPNSVTYSTLINGLCSEGRLE 289

Query: 217 TVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSKSYVLAI 276
              +   E ++K +                                  P V   +Y + +
Sbjct: 290 EAMDMLEEMVQKGIE---------------------------------PTVY--TYTIPL 314

Query: 277 EAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCK 336
            +       S A EL  +M+    +   + + ++IS   ++G  + A GL  +M  +G  
Sbjct: 315 VSLCDAGCSSEAVELLGKMKKRGCVPNIQTFTALISGLSRDGKFEIAIGLYHKMLADGLV 374

Query: 337 PNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGD 396
           P  +TY  L      + L  EG    E    +        S P  +T   II+ F   GD
Sbjct: 375 PTTVTYNALI-----NQLCVEG--RFETAFTIFKWMLSHGSLPSTQTYNEIIKCFCLMGD 427

Query: 397 VGNAENLFEELKKANYTKYTFVYNTLIKAYVK-AKINDP-NLLRRMILGGARPDAETYSL 454
           +  A  +F+++ KA  +     YNTLI  Y K   +N+   LL  M   G +PDA TY+ 
Sbjct: 428 IQKAMVIFDKMLKAGSSPNVITYNTLIYGYCKQGNLNNAMRLLEIMKGNGLKPDAWTYTE 487

Query: 455 L 455
           L
Sbjct: 488 L 488



 Score = 45.8 bits (107), Expect = 0.041,   Method: Compositional matrix adjust.
 Identities = 37/187 (19%), Positives = 81/187 (43%), Gaps = 9/187 (4%)

Query: 271 SYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEM 330
           S+   +   G+   V  A +++++M +     +   +N++I++ CK G + +A  ++  +
Sbjct: 169 SFTTLLIQLGKFDMVDLARDMYIKMLNSGIRPSLLTFNTMINILCKKGRVQEAKLIMSHI 228

Query: 331 SMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEI 390
                 PNA TY  L LG  +++ ++  F   +  +K           P   T  ++I  
Sbjct: 229 FRYDAYPNAFTYTSLILGHCRNHNLDLAFAMFDRMVK-------DGCDPNSVTYSTLING 281

Query: 391 FAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKINDP--NLLRRMILGGARPD 448
              +G +  A ++ EE+ +       + Y   + +   A  +     LL +M   G  P+
Sbjct: 282 LCSEGRLEEAMDMLEEMVQKGIEPTVYTYTIPLVSLCDAGCSSEAVELLGKMKKRGCVPN 341

Query: 449 AETYSLL 455
            +T++ L
Sbjct: 342 IQTFTAL 348


>gi|449460383|ref|XP_004147925.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g09060-like [Cucumis sativus]
 gi|449516585|ref|XP_004165327.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g09060-like [Cucumis sativus]
          Length = 701

 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 98/409 (23%), Positives = 184/409 (44%), Gaps = 28/409 (6%)

Query: 60  PKELDYSYLLEFTIKNHGISQGEKLFCCIPKDYQNE--LLYNNLVIACLDKGVIKLSLEY 117
           P    Y+ L++ + K     +G+ L   + ++  N   L Y  L+ A    G +  ++E 
Sbjct: 147 PNLQTYNILIKISCKKRQFEKGKGLLTWMFENGLNPDILSYGTLINALAKSGNLLDAVEL 206

Query: 118 MKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADK-VAPHVSTFHILMKIEA 176
             +M V G +   + +N LI      G       I +++  +  V P V T++I++    
Sbjct: 207 FDEMSVRGVNPDVMCYNILIDGFLRKGDFVKANEIWKRLLTESSVYPSVETYNIMINGLC 266

Query: 177 NDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWS 236
               ++  M++++ MK++E  P+  ++  +    + A  +  AE   + + +S    +  
Sbjct: 267 KLGKLDESMEMWNRMKKNEKSPDLFTFSSMIHGLSKAGNFNAAEKVFQEMIESGLSPDVR 326

Query: 237 TLDVLIILYGYLAKGKDLERIWATVQELPNVRSK-------SYVLAIEAFGRIAQVSRAE 289
           T + +  L G    GK L + +    EL NV SK       SY + I+      +V +A 
Sbjct: 327 TYNAM--LSGLFRTGK-LNKCF----ELWNVMSKNNCCNIVSYNMLIQGLLDNKKVEQAI 379

Query: 290 ELWLEMQSVKQLKA-TEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALG 348
             W ++   + LKA +  Y  +I+  CKNG+++KA  +L+E    G   +   Y  +  G
Sbjct: 380 CYW-QLLHERGLKADSTTYGLLINGLCKNGYLNKALRILEEAENEGADLDTFAYSSMVHG 438

Query: 349 CFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELK 408
             K  ++E+   A+EL  ++   ++  +S        S+I  +     +  A ++  E+K
Sbjct: 439 LCKKGMLEQ---AVELIHQMKKNRRKLNS----HVFNSLINGYVRAFKLEEAISVLREMK 491

Query: 409 KANYTKYTFVYNTLIKAYVKA-KINDPNL-LRRMILGGARPDAETYSLL 455
             +       YNT+I    KA + +D  L L+ M+  G +PD  TYSLL
Sbjct: 492 SKDCAPTVVSYNTIINGLCKAERFSDAYLSLKEMLEEGLKPDMITYSLL 540



 Score = 50.8 bits (120), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 74/390 (18%), Positives = 154/390 (39%), Gaps = 36/390 (9%)

Query: 98  YNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMK 157
           YN ++      G +  S+E   +M+    S     F+ +I   S  G       + ++M 
Sbjct: 258 YNIMINGLCKLGKLDESMEMWNRMKKNEKSPDLFTFSSMIHGLSKAGNFNAAEKVFQEMI 317

Query: 158 ADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYT 217
              ++P V T++ ++        +    ++++ M ++    N VSY +L       +   
Sbjct: 318 ESGLSPDVRTYNAMLSGLFRTGKLNKCFELWNVMSKNNC-CNIVSYNMLIQGLLDNKKVE 376

Query: 218 VAETYVEALEKSMTGNNWSTLDVLI---ILYGYLAKGKDLERIWATVQELPNVRSKSYVL 274
            A  Y + L +     + +T  +LI      GYL K   L  +     E  ++ + +Y  
Sbjct: 377 QAICYWQLLHERGLKADSTTYGLLINGLCKNGYLNKA--LRILEEAENEGADLDTFAYSS 434

Query: 275 AIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNG 334
            +    +   + +A EL  +M+  ++   +  +NS+I+ Y +   +++A  +L+EM    
Sbjct: 435 MVHGLCKKGMLEQAVELIHQMKKNRRKLNSHVFNSLINGYVRAFKLEEAISVLREMKSKD 494

Query: 335 CKPNAITYRHLALGCFKS-----------NLVEEGFKALELGMKLITTKKVRSS------ 377
           C P  ++Y  +  G  K+            ++EEG K   +   L+     R        
Sbjct: 495 CAPTVVSYNTIINGLCKAERFSDAYLSLKEMLEEGLKPDMITYSLLIDGLCRGEKVDMAL 554

Query: 378 -----------TPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAY 426
                       P L+    II        V  A  +F ++++ N       +NT+++  
Sbjct: 555 NLWHQCINKRLKPDLQMHNIIIHGLCTAQKVDVALEIFTQMRQVNCVPDLVTHNTIMEGL 614

Query: 427 VKAK--INDPNLLRRMILGGARPDAETYSL 454
            KA   +    +  R++  G +PD  +Y++
Sbjct: 615 YKAGDCVEALKIWDRILEAGLQPDIISYNI 644



 Score = 48.5 bits (114), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 54/225 (24%), Positives = 90/225 (40%), Gaps = 39/225 (17%)

Query: 265 PNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKAS 324
           P +RS + +L   AF    Q   AE  +   Q+       + YN +I + CK    +K  
Sbjct: 112 PGIRSFNSML--NAFIESNQWREAELFFTYFQTAGMSPNLQTYNILIKISCKKRQFEKGK 169

Query: 325 GLLKEMSMNGCKPNAITYRHLALGCFKS-------------------------NLVEEGF 359
           GLL  M  NG  P+ ++Y  L     KS                         N++ +GF
Sbjct: 170 GLLTWMFENGLNPDILSYGTLINALAKSGNLLDAVELFDEMSVRGVNPDVMCYNILIDGF 229

Query: 360 -------KALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANY 412
                  KA E+  +L+T   V    P +ET   +I    + G +  +  ++  +KK   
Sbjct: 230 LRKGDFVKANEIWKRLLTESSVY---PSVETYNIMINGLCKLGKLDESMEMWNRMKKNEK 286

Query: 413 TKYTFVYNTLIKAYVKAKINDP--NLLRRMILGGARPDAETYSLL 455
           +   F ++++I    KA   +    + + MI  G  PD  TY+ +
Sbjct: 287 SPDLFTFSSMIHGLSKAGNFNAAEKVFQEMIESGLSPDVRTYNAM 331



 Score = 44.3 bits (103), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 58/258 (22%), Positives = 104/258 (40%), Gaps = 35/258 (13%)

Query: 232 GNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSK--SYVL--AIEAFGRIAQVSR 287
           G +  T     +++G   KG  LE+    + ++   R K  S+V    I  + R  ++  
Sbjct: 424 GADLDTFAYSSMVHGLCKKGM-LEQAVELIHQMKKNRRKLNSHVFNSLINGYVRAFKLEE 482

Query: 288 AEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLAL 347
           A  +  EM+S         YN++I+  CK      A   LKEM   G KP+ ITY  L  
Sbjct: 483 AISVLREMKSKDCAPTVVSYNTIINGLCKAERFSDAYLSLKEMLEEGLKPDMITYSLLID 542

Query: 348 GCFKS-------------------------NLVEEGF---KALELGMKLITTKKVRSSTP 379
           G  +                          N++  G    + +++ +++ T  +  +  P
Sbjct: 543 GLCRGEKVDMALNLWHQCINKRLKPDLQMHNIIIHGLCTAQKVDVALEIFTQMRQVNCVP 602

Query: 380 WLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVK-AKINDP-NLL 437
            L T  +I+E   + GD   A  +++ + +A        YN   K     A+++D    L
Sbjct: 603 DLVTHNTIMEGLYKAGDCVEALKIWDRILEAGLQPDIISYNITFKGLCSCARVSDAIEFL 662

Query: 438 RRMILGGARPDAETYSLL 455
              +  G  P+A T+++L
Sbjct: 663 YDALDRGILPNAPTWNVL 680


>gi|18391414|ref|NP_563911.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75167758|sp|Q9ASZ8.1|PPR37_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g12620
 gi|13605505|gb|AAK32746.1|AF361578_1 At1g12620/T12C24_25 [Arabidopsis thaliana]
 gi|24111307|gb|AAN46777.1| At1g12620/T12C24_25 [Arabidopsis thaliana]
 gi|332190781|gb|AEE28902.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 621

 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 82/386 (21%), Positives = 163/386 (42%), Gaps = 40/386 (10%)

Query: 105 CLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPH 164
           CL+ G +  +LE + +M  +GH  + +  N L+      G+      ++ +M      P+
Sbjct: 153 CLE-GRVSEALELVDRMVEMGHKPTLITLNALVNGLCLNGKVSDAVLLIDRMVETGFQPN 211

Query: 165 VSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVE 224
             T+  ++K+          M++   M+  +++ + V Y I+     + +  ++   +  
Sbjct: 212 EVTYGPVLKVMCKSGQTALAMELLRKMEERKIKLDAVKYSIII--DGLCKDGSLDNAFNL 269

Query: 225 ALEKSMTGNNWSTLDVLIILYGYLAKGK-----DLERIWATVQELPNVRSKSYVLAIEAF 279
             E  + G     +    ++ G+   G+      L R     +  P+V + S +  I+ F
Sbjct: 270 FNEMEIKGFKADIIIYTTLIRGFCYAGRWDDGAKLLRDMIKRKITPDVVAFSAL--IDCF 327

Query: 280 GRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNA 339
            +  ++  AEEL  EM        T  Y S+I  +CK   +DKA+ +L  M   GC PN 
Sbjct: 328 VKEGKLREAEELHKEMIQRGISPDTVTYTSLIDGFCKENQLDKANHMLDLMVSKGCGPNI 387

Query: 340 ITYRHLALGCFKSNLVEEGFK----------------------------ALELGMKLITT 371
            T+  L  G  K+NL+++G +                             LE+  +L   
Sbjct: 388 RTFNILINGYCKANLIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKLEVAKELFQE 447

Query: 372 KKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKA-K 430
              R   P + +   +++   + G+   A  +FE+++K+       +YN +I     A K
Sbjct: 448 MVSRRVRPDIVSYKILLDGLCDNGEPEKALEIFEKIEKSKMELDIGIYNIIIHGMCNASK 507

Query: 431 INDP-NLLRRMILGGARPDAETYSLL 455
           ++D  +L   + L G +PD +TY+++
Sbjct: 508 VDDAWDLFCSLPLKGVKPDVKTYNIM 533



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 75/396 (18%), Positives = 166/396 (41%), Gaps = 16/396 (4%)

Query: 39  LQLNKRALEVMEWVIR--ERPYRPKELDYSYLLEFTIKNHGISQGEKLFCCIP--KDYQN 94
           L LN +  + +  + R  E  ++P E+ Y  +L+   K+   +   +L   +   K   +
Sbjct: 187 LCLNGKVSDAVLLIDRMVETGFQPNEVTYGPVLKVMCKSGQTALAMELLRKMEERKIKLD 246

Query: 95  ELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILR 154
            + Y+ ++      G +  +     +M + G     +++  LI      GR      +LR
Sbjct: 247 AVKYSIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIIIYTTLIRGFCYAGRWDDGAKLLR 306

Query: 155 QMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVAR 214
            M   K+ P V  F  L+     +  +    +++ +M +  + P+ V+Y  L        
Sbjct: 307 DMIKRKITPDVVAFSALIDCFVKEGKLREAEELHKEMIQRGISPDTVTYTSLIDGFCKEN 366

Query: 215 LYTVAETYVEALEKSMTGNNWSTLDVLIILY---GYLAKGKDLERIWATVQELPNVRSKS 271
               A   ++ +     G N  T ++LI  Y     +  G +L R  +    + +  + +
Sbjct: 367 QLDKANHMLDLMVSKGCGPNIRTFNILINGYCKANLIDDGLELFRKMSLRGVVAD--TVT 424

Query: 272 YVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMS 331
           Y   I+ F  + ++  A+EL+ EM S +       Y  ++   C NG  +KA  + +++ 
Sbjct: 425 YNTLIQGFCELGKLEVAKELFQEMVSRRVRPDIVSYKILLDGLCDNGEPEKALEIFEKIE 484

Query: 332 MNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIF 391
            +  + +   Y  +  G   ++ V++ +        L  +  ++   P ++T   +I   
Sbjct: 485 KSKMELDIGIYNIIIHGMCNASKVDDAW-------DLFCSLPLKGVKPDVKTYNIMIGGL 537

Query: 392 AEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYV 427
            +KG +  A+ LF ++++  ++     YN LI+A++
Sbjct: 538 CKKGSLSEADLLFRKMEEDGHSPNGCTYNILIRAHL 573



 Score = 56.6 bits (135), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 63/277 (22%), Positives = 113/277 (40%), Gaps = 16/277 (5%)

Query: 185 MKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIIL 244
           + ++ +M RS   P  + +  L +  A  + Y +     + +E     +N  TL ++I  
Sbjct: 57  VDLFQEMTRSRPRPRLIDFSRLFSVVARTKQYDLVLDLCKQMELKGIAHNLYTLSIMI-- 114

Query: 245 YGYLAKGKDLERIWATVQELPNV----RSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQ 300
                + + L   ++ + ++  +     + ++   I       +VS A EL   M  +  
Sbjct: 115 -NCCCRCRKLSLAFSAMGKIIKLGYEPDTVTFSTLINGLCLEGRVSEALELVDRMVEMGH 173

Query: 301 LKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFK 360
                  N++++  C NG +  A  L+  M   G +PN +TY     G     + + G  
Sbjct: 174 KPTLITLNALVNGLCLNGKVSDAVLLIDRMVETGFQPNEVTY-----GPVLKVMCKSGQT 228

Query: 361 ALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYN 420
           A  L M+L+   + R           II+   + G + NA NLF E++   +     +Y 
Sbjct: 229 A--LAMELLRKMEERKIKLDAVKYSIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIIIYT 286

Query: 421 TLIKAYVKAKINDPN--LLRRMILGGARPDAETYSLL 455
           TLI+ +  A   D    LLR MI     PD   +S L
Sbjct: 287 TLIRGFCYAGRWDDGAKLLRDMIKRKITPDVVAFSAL 323


>gi|255661188|gb|ACU25763.1| pentatricopeptide repeat-containing protein [Aloysia virgata]
          Length = 426

 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 74/322 (22%), Positives = 149/322 (46%), Gaps = 22/322 (6%)

Query: 98  YNNLVIACLDKGVIKLSLEYMKKM---RVLGHSISYLVFNRLIILNSSPGRRKTIPNILR 154
           Y+ L+     +G+   +L +++KM   RV G  + Y   + LI L+          +I  
Sbjct: 12  YSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLY---SNLIELSRKLCDYSKAISIFS 68

Query: 155 QMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVAR 214
           ++K     P +  ++ ++ +            + S+M+ + V PN  SY  L T +   +
Sbjct: 69  RLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVMPNTASYSTLLTMYVENK 128

Query: 215 LYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQEL---PNVRSKS 271
            +  A +    + +     + +T +++I +YG L   K+ ++++  ++++   PNV S +
Sbjct: 129 KFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYN 188

Query: 272 YVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMS 331
            +L +  +G       A  L+  MQ    ++    YNS++ +Y K    +KA+ L++EM 
Sbjct: 189 TLLRV--YGDAELFGEAIHLFRLMQRKNIVQNVVTYNSMMMIYGKTLEHEKANNLIQEMQ 246

Query: 332 MNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTL--SIIE 389
             G +PN+ITY         S ++    K  +L    +  +K+RSS   ++  L  ++I 
Sbjct: 247 NRGIEPNSITY---------STIISIWGKVGKLDRAAMLFQKLRSSGVEIDQVLYQTMIV 297

Query: 390 IFAEKGDVGNAENLFEELKKAN 411
            +   G V +A+ L  ELK  +
Sbjct: 298 AYERAGLVAHAKRLLHELKSPD 319



 Score = 41.2 bits (95), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 34/127 (26%), Positives = 57/127 (44%), Gaps = 11/127 (8%)

Query: 307 YNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGM 366
           YN++I+V+ K     +A  L+ EM   G  PN  +Y  L        +  E  K LE   
Sbjct: 82  YNAMINVFGKAKLFREARSLISEMRTAGVMPNTASYSTLL------TMYVENKKFLE--- 132

Query: 367 KLITTKKVRSSTPWLETTLS--IIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIK 424
            L    ++R     L+ T    +I+++ + G    A+ LF  ++K         YNTL++
Sbjct: 133 ALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTLLR 192

Query: 425 AYVKAKI 431
            Y  A++
Sbjct: 193 VYGDAEL 199


>gi|224056220|ref|XP_002298762.1| predicted protein [Populus trichocarpa]
 gi|222846020|gb|EEE83567.1| predicted protein [Populus trichocarpa]
          Length = 643

 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 85/361 (23%), Positives = 143/361 (39%), Gaps = 48/361 (13%)

Query: 98  YNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRR-KTIPNILRQM 156
           Y +L+ AC+  G  + ++   KKM   G   + + +N ++ +    G     I  +   M
Sbjct: 36  YTSLITACVSNGRYREAVMVFKKMEEEGCKPTLITYNVILNVYGKMGMPWNKIKGLFEGM 95

Query: 157 KADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLY 216
           K   V P   T++ L+         E    V+ DMK     P++V+Y      +A+  +Y
Sbjct: 96  KNAGVLPDEYTYNTLITCCRRGSLHEEAAAVFKDMKSMGFVPDKVTY------NALLDVY 149

Query: 217 TVAETYVEALE--KSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSKSYVL 274
             +    EA+E  + M  N  S     I+ Y  L                          
Sbjct: 150 GKSRRTKEAMEVLREMEVNGCSP---SIVTYNSL-------------------------- 180

Query: 275 AIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNG 334
            I A+ R   +  A EL  +M           Y +++S + + G  + A  +  EM   G
Sbjct: 181 -ISAYARDGLLKEAMELKNQMVEGGINLDVFTYTTLLSGFVRAGKDESAMRVFAEMRAAG 239

Query: 335 CKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEK 394
           CKPN  T+  L     K +     F  +   MK+    K     P + T  +++ +F + 
Sbjct: 240 CKPNICTFNAL----IKMHGNRGKFAEM---MKVFEEIKNSCCVPDIVTWNTLLAVFGQN 292

Query: 395 GDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKINDP--NLLRRMILGGARPDAETY 452
           G       +F+E+K+A +      YNTLI AY +    D   ++ +RM+  G  PD  TY
Sbjct: 293 GMDSEVSGVFKEMKRAGFVPERDTYNTLISAYSRCGSFDQAMDIYKRMLEAGITPDLSTY 352

Query: 453 S 453
           +
Sbjct: 353 N 353



 Score = 72.8 bits (177), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 86/438 (19%), Positives = 190/438 (43%), Gaps = 27/438 (6%)

Query: 33  INRLRKLQLNKRALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQGEKLF------C 86
           I   R+  L++ A  V +  ++   + P ++ Y+ LL+   K+    +  ++        
Sbjct: 111 ITCCRRGSLHEEAAAVFK-DMKSMGFVPDKVTYNALLDVYGKSRRTKEAMEVLREMEVNG 169

Query: 87  CIPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRR 146
           C P    + + YN+L+ A    G++K ++E   +M   G ++    +  L+      G+ 
Sbjct: 170 CSP----SIVTYNSLISAYARDGLLKEAMELKNQMVEGGINLDVFTYTTLLSGFVRAGKD 225

Query: 147 KTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCIL 206
           ++   +  +M+A    P++ TF+ L+K+  N      +MKV+ ++K S   P+ V++  L
Sbjct: 226 ESAMRVFAEMRAAGCKPNICTFNALIKMHGNRGKFAEMMKVFEEIKNSCCVPDIVTWNTL 285

Query: 207 ATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILY---GYLAKGKDLERIWATVQE 263
                   + +      + ++++       T + LI  Y   G   +  D+ +       
Sbjct: 286 LAVFGQNGMDSEVSGVFKEMKRAGFVPERDTYNTLISAYSRCGSFDQAMDIYKRMLEAGI 345

Query: 264 LPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKA 323
            P++ + + VLA  A  R     ++E+++ EM+  +       Y S++  Y     I + 
Sbjct: 346 TPDLSTYNAVLA--ALARGGLWEQSEKIFAEMKDGRCKPNELTYCSLLHAYANGKEIGRM 403

Query: 324 SGLLKEMSMNGCKPNAITYRHLALGCFKSN-LVEEGFKALELGMKLITTKKVRSSTPWLE 382
             L +E+     +P+A+  + L L   K + LVE     LEL        K +  +P L 
Sbjct: 404 LALAEEICSGVIEPHAVLLKTLVLVNSKCDLLVEAEVAFLEL--------KRKGFSPDLS 455

Query: 383 TTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKI--NDPNLLRRM 440
           T  +++ I+  +        +   + ++ +T     YN+L+  + +++       +L+ +
Sbjct: 456 TLNAMLSIYGRRQMFTKTNEILNFMNESGFTPSLATYNSLMYMHSRSENFERSEEVLKEI 515

Query: 441 ILGGARPDAETYSLLKLA 458
           +  G +PD  +Y+ +  A
Sbjct: 516 LAKGIKPDTISYNTVIFA 533



 Score = 72.4 bits (176), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 77/374 (20%), Positives = 152/374 (40%), Gaps = 55/374 (14%)

Query: 86  CCIPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGR 145
           CC+P    + + +N L+      G+        K+M+  G       +N LI   S  G 
Sbjct: 274 CCVP----DIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPERDTYNTLISAYSRCGS 329

Query: 146 RKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCI 205
                +I ++M    + P +ST++ ++   A     E   K++++MK    +PNE++YC 
Sbjct: 330 FDQAMDIYKRMLEAGITPDLSTYNAVLAALARGGLWEQSEKIFAEMKDGRCKPNELTYCS 389

Query: 206 LATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELP 265
           L  A+A                                       GK++ R+ A  +E+ 
Sbjct: 390 LLHAYA--------------------------------------NGKEIGRMLALAEEIC 411

Query: 266 NVRSKSYVLAIEAF----GRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFID 321
           +   + + + ++       +   +  AE  +LE++           N+++S+Y +     
Sbjct: 412 SGVIEPHAVLLKTLVLVNSKCDLLVEAEVAFLELKRKGFSPDLSTLNAMLSIYGRRQMFT 471

Query: 322 KASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWL 381
           K + +L  M+ +G  P+  TY  L     +S    E F+  E  +K I  K ++  T   
Sbjct: 472 KTNEILNFMNESGFTPSLATYNSLMYMHSRS----ENFERSEEVLKEILAKGIKPDTISY 527

Query: 382 ETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKINDP--NLLRR 439
            T   +I  +   G +  A  +F E++++        YNT + +Y    + +   +++R 
Sbjct: 528 NT---VIFAYCRNGRMKEASRIFSEMRESGLVPDVITYNTFVASYAADSMFEDAIDVVRY 584

Query: 440 MILGGARPDAETYS 453
           MI  G +P+  TY+
Sbjct: 585 MIKHGCKPNQNTYN 598



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 62/301 (20%), Positives = 120/301 (39%), Gaps = 36/301 (11%)

Query: 189 SDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYL 248
           +D+ +     +  +Y  L TA      Y  A    + +E+        T +V++ +YG +
Sbjct: 22  NDLHKDGFGLDVYAYTSLITACVSNGRYREAVMVFKKMEEEGCKPTLITYNVILNVYGKM 81

Query: 249 A----KGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKAT 304
                K K L         LP+    +Y   I    R +    A  ++ +M+S+  +   
Sbjct: 82  GMPWNKIKGLFEGMKNAGVLPD--EYTYNTLITCCRRGSLHEEAAAVFKDMKSMGFVPDK 139

Query: 305 EQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEE------- 357
             YN+++ VY K+    +A  +L+EM +NGC P+ +TY  L     +  L++E       
Sbjct: 140 VTYNALLDVYGKSRRTKEAMEVLREMEVNGCSPSIVTYNSLISAYARDGLLKEAMELKNQ 199

Query: 358 ------------------GF---KALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGD 396
                             GF      E  M++    +     P + T  ++I++   +G 
Sbjct: 200 MVEGGINLDVFTYTTLLSGFVRAGKDESAMRVFAEMRAAGCKPNICTFNALIKMHGNRGK 259

Query: 397 VGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKIND--PNLLRRMILGGARPDAETYSL 454
                 +FEE+K +        +NTL+  + +  ++     + + M   G  P+ +TY+ 
Sbjct: 260 FAEMMKVFEEIKNSCCVPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPERDTYNT 319

Query: 455 L 455
           L
Sbjct: 320 L 320


>gi|302806388|ref|XP_002984944.1| hypothetical protein SELMODRAFT_121294 [Selaginella moellendorffii]
 gi|300147530|gb|EFJ14194.1| hypothetical protein SELMODRAFT_121294 [Selaginella moellendorffii]
          Length = 468

 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 77/325 (23%), Positives = 141/325 (43%), Gaps = 12/325 (3%)

Query: 33  INRLRKLQLNKRALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQGEKLFCCIPKDY 92
           +  L K  +  +ALEV E  ++     P  + Y+ L+          +   LF  + ++ 
Sbjct: 17  VQSLAKAGMLAQALEVFE-TMKSESCVPSLVTYNVLINSRCNAGEFGKALDLFQSMKREK 75

Query: 93  QNE---LLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTI 149
           + E     YN L+      G  + + + + +MR    + +   ++ +I       + +  
Sbjct: 76  RVEPDRWTYNTLISGLCSSGNTEGARKLLSEMRDKNIAANVFTYSSIIKSLVKEAKPEES 135

Query: 150 PNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATA 209
             +L +M A    P V  F+ +M+  A  +N+E   +VY  M  S  +P+ VSY IL   
Sbjct: 136 YKVLEEMMAAGCNPDVFAFNGVMQGFARSNNMEKAREVYQHMVESGYKPDNVSYHIL--I 193

Query: 210 HAVARLYTVAETYVEALEKSMTGNNW--STLDVLIILYGYLAKG---KDLERIWATVQEL 264
           H +A++  + E+     E +M    +  + +    +++G    G   K LE   + ++  
Sbjct: 194 HGLAKIGKLDESLKILSEMAMRAAGYVPNVITFSTLIHGLCRTGELEKALEVFGSMLEAG 253

Query: 265 PNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKAS 324
                 +Y   I    R  +V +A EL+ +M           YNS+I+ YCK G +D+A 
Sbjct: 254 CKPNKYTYTTLIAGLCRAEKVIQARELFEKMTQACIPPDAVAYNSLIAGYCKRGSMDEAE 313

Query: 325 GLLKEMSMN-GCKPNAITYRHLALG 348
            L +EMS   G +P  +T+  L  G
Sbjct: 314 KLYREMSGGAGLQPTIVTFNTLIDG 338



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 73/314 (23%), Positives = 129/314 (41%), Gaps = 20/314 (6%)

Query: 152 ILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSE-VEPNEVSYCILATAH 210
           +   MK++   P + T+++L+    N       + ++  MKR + VEP+  +Y  L +  
Sbjct: 32  VFETMKSESCVPSLVTYNVLINSRCNAGEFGKALDLFQSMKREKRVEPDRWTYNTLISGL 91

Query: 211 AVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSK 270
             +     A   +  +       N  T   +I     L K    E  +  ++E+      
Sbjct: 92  CSSGNTEGARKLLSEMRDKNIAANVFTYSSII---KSLVKEAKPEESYKVLEEMMAAGCN 148

Query: 271 SYVLA----IEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGL 326
             V A    ++ F R   + +A E++  M           Y+ +I    K G +D++  +
Sbjct: 149 PDVFAFNGVMQGFARSNNMEKAREVYQHMVESGYKPDNVSYHILIHGLAKIGKLDESLKI 208

Query: 327 LKEMSMN--GCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETT 384
           L EM+M   G  PN IT+  L  G  ++  +E   KALE+   ++         P   T 
Sbjct: 209 LSEMAMRAAGYVPNVITFSTLIHGLCRTGELE---KALEVFGSMLEA----GCKPNKYTY 261

Query: 385 LSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVK-AKINDPNLLRRMILG 443
            ++I        V  A  LFE++ +A        YN+LI  Y K   +++   L R + G
Sbjct: 262 TTLIAGLCRAEKVIQARELFEKMTQACIPPDAVAYNSLIAGYCKRGSMDEAEKLYREMSG 321

Query: 444 GA--RPDAETYSLL 455
           GA  +P   T++ L
Sbjct: 322 GAGLQPTIVTFNTL 335



 Score = 47.8 bits (112), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 44/156 (28%), Positives = 67/156 (42%), Gaps = 8/156 (5%)

Query: 295 MQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNL 354
           M   K     + Y+ V+    K G + +A  + + M    C P+ +TY  L     + N 
Sbjct: 1   MSKAKCAIGGDAYDFVVQSLAKAGMLAQALEVFETMKSESCVPSLVTYNVLINS--RCNA 58

Query: 355 VEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTK 414
            E G KAL+L   +   K+V     W   TL  I      G+   A  L  E++  N   
Sbjct: 59  GEFG-KALDLFQSMKREKRVEPDR-WTYNTL--ISGLCSSGNTEGARKLLSEMRDKNIAA 114

Query: 415 YTFVYNTLIKAYVK-AKINDP-NLLRRMILGGARPD 448
             F Y+++IK+ VK AK  +   +L  M+  G  PD
Sbjct: 115 NVFTYSSIIKSLVKEAKPEESYKVLEEMMAAGCNPD 150



 Score = 45.8 bits (107), Expect = 0.046,   Method: Compositional matrix adjust.
 Identities = 53/247 (21%), Positives = 96/247 (38%), Gaps = 41/247 (16%)

Query: 156 MKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARL 215
           M+A    P+V TF  L+        +E  ++V+  M  +  +PN+ +Y  L      A  
Sbjct: 214 MRAAGYVPNVITFSTLIHGLCRTGELEKALEVFGSMLEAGCKPNKYTYTTLIAGLCRAEK 273

Query: 216 YTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGK--DLERIWATVQELPNVRSK--S 271
              A    E + ++    +    + LI   GY  +G   + E+++  +     ++    +
Sbjct: 274 VIQARELFEKMTQACIPPDAVAYNSLIA--GYCKRGSMDEAEKLYREMSGGAGLQPTIVT 331

Query: 272 YVLAIEAFGRIAQVSRAEELWLEM--------------------QSVKQLKATEQYN--- 308
           +   I+ F ++ ++ RA EL  EM                    ++ K  +A E Y    
Sbjct: 332 FNTLIDGFCKLGKLGRANELVAEMGTKGLAADTCTYRILIAGLSRATKLDEALEVYKQMR 391

Query: 309 ------------SVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVE 356
                       S +   CK G ID+A  + +    +G  PN  T+R L+    K   VE
Sbjct: 392 EKKFLLDPVSCVSFVGGLCKTGNIDQAYAVFEATRKSGAVPNPETFRILSESLIKLGRVE 451

Query: 357 EGFKALE 363
           +  K +E
Sbjct: 452 DAQKLME 458


>gi|224102411|ref|XP_002312667.1| predicted protein [Populus trichocarpa]
 gi|222852487|gb|EEE90034.1| predicted protein [Populus trichocarpa]
          Length = 512

 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 88/391 (22%), Positives = 152/391 (38%), Gaps = 69/391 (17%)

Query: 98  YNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMK 157
           YN  +   +      L+  Y  KM  LG S+S   ++R I           I N+L+ M+
Sbjct: 47  YNRFIGVLIRHSRFDLAHHYYSKMAPLGFSLSSFTYSRFISGLCQTKEFTFIDNLLKDME 106

Query: 158 ADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYT 217
                P +  F+I + +   ++  E  ++V+  M     EP+ V++ I+       + + 
Sbjct: 107 KLHCVPDIWAFNIYLNLLFRENREESALEVFGRMVERGREPDVVTFTIIIDGLCKMKKFD 166

Query: 218 VA-ETYVEALEKSMTGNNWSTLDVLIILYGYLAKGK-DLERIWATVQELPNVRSKSYVLA 275
            A + ++  L+K +  +N + + + +   G    G+ DL                +Y L 
Sbjct: 167 AAVQFWLNMLDKGIRPDNKACVALAV---GLCDGGQVDL----------------AYELI 207

Query: 276 IEAF-GRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNG 334
           I    G +++VS                 T  YN++IS +C+ G IDKA  ++  MS  G
Sbjct: 208 IGVISGGLSEVS-----------------TLVYNALISGFCRAGRIDKALAMVSFMSRTG 250

Query: 335 CKPNAITYRHLALGCFKSNLVEEGFKAL----------------------------ELGM 366
           CKP+ +TY  L   C    + EE  K L                            +   
Sbjct: 251 CKPDLVTYNVLLNYCCNEFMFEEAVKLLKKMECSAIEPDVYSYNQLLKAHCKANHPDKAY 310

Query: 367 KLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAY 426
             + TK V      + +  +II+ F    +   A  LFEE+ +         +  LIKA+
Sbjct: 311 LFMVTKMVPKGFCDVVSYNTIIKAFCSISNNRRAYKLFEEMGRKGIAPDVVTFTILIKAF 370

Query: 427 VKAKIND--PNLLRRMILGGARPDAETYSLL 455
           ++   +D    LL  M   G  PD   Y+ +
Sbjct: 371 LREGNSDMAKKLLDLMAGMGLLPDRIFYTTI 401



 Score = 59.7 bits (143), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 63/264 (23%), Positives = 114/264 (43%), Gaps = 12/264 (4%)

Query: 101 LVIACLDKGVIKLSLEYMKKMRVLGHS-ISYLVFNRLIILNSSPGRRKTIPNILRQMKAD 159
           L +   D G + L+ E +  +   G S +S LV+N LI      GR      ++  M   
Sbjct: 190 LAVGLCDGGQVDLAYELIIGVISGGLSEVSTLVYNALISGFCRAGRIDKALAMVSFMSRT 249

Query: 160 KVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVA 219
              P + T+++L+    N+   E  +K+   M+ S +EP+  SY  L  AH  A      
Sbjct: 250 GCKPDLVTYNVLLNYCCNEFMFEEAVKLLKKMECSAIEPDVYSYNQLLKAHCKAN--HPD 307

Query: 220 ETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQEL------PNVRSKSYV 273
           + Y+  + K +       +    I+  + +   +  R +   +E+      P+V   ++ 
Sbjct: 308 KAYLFMVTKMVPKGFCDVVSYNTIIKAFCSISNN-RRAYKLFEEMGRKGIAPDV--VTFT 364

Query: 274 LAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMN 333
           + I+AF R      A++L   M  +  L     Y ++I  +CK+G ++ A  +  +M   
Sbjct: 365 ILIKAFLREGNSDMAKKLLDLMAGMGLLPDRIFYTTIIDHHCKSGKVEMAHSIFCDMVEK 424

Query: 334 GCKPNAITYRHLALGCFKSNLVEE 357
           G  P+ ++Y  L  G  KS  V E
Sbjct: 425 GITPDVVSYNALINGFCKSLRVGE 448


>gi|12583808|gb|AAG59660.1|AC084319_18 putative membrane-associated salt-inducible protein [Oryza sativa
           Japonica Group]
          Length = 772

 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 82/377 (21%), Positives = 163/377 (43%), Gaps = 24/377 (6%)

Query: 87  CIPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRR 146
           C P    N + +N L+      G+ +   E + +M   G +    ++  +I      G  
Sbjct: 247 CAP----NIVTFNTLIGYLCRNGLFERVHEVLAQMSEHGCTPDIRMYATIIDGICKEGHL 302

Query: 147 KTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCIL 206
           +    IL +M +  + P+V  ++ ++K   +    +   ++ S+M + +   ++V++ IL
Sbjct: 303 EVANEILNRMPSYGLKPNVVCYNTVLKGLCSAERWKEAEELLSEMFQKDCPLDDVTFNIL 362

Query: 207 ATAHAVARLYTVAETYVEALEKSMT-GNNWSTLDVLIILYGYLAKGKDLERI-----WAT 260
                   L    +  +E LE+ ++ G     +    ++ G+  +G   E +      ++
Sbjct: 363 VDFFCQNGL---VDRVIELLEQMLSHGCMPDVITYTTVINGFCKEGLIDEAVMLLKSMSS 419

Query: 261 VQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFI 320
               PN  + SY + ++      +   AEEL  +M           +N++I+  CK G +
Sbjct: 420 CGCKPN--TVSYTIVLKGLCSAGRWVDAEELMSQMIQQGCPPNPVTFNTLINFLCKKGLV 477

Query: 321 DKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPW 380
           ++A  LLK+M +NGC P+ I+Y  +  G  K+   EE   ALEL + ++  K +  +T  
Sbjct: 478 EQAIELLKQMLVNGCSPDLISYSTVIDGLGKAGKTEE---ALEL-LNVMVNKGISPNTII 533

Query: 381 LETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKINDP--NLLR 438
                SI    + +G V     +F+ +K         +YN +I +  K    D   +   
Sbjct: 534 YS---SIACALSREGRVNKVIQMFDNIKDTTIRSDAVLYNAVISSLCKRWETDRAIDFFA 590

Query: 439 RMILGGARPDAETYSLL 455
            M+  G  P+  TY++L
Sbjct: 591 YMVSNGCMPNESTYTML 607



 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 84/371 (22%), Positives = 153/371 (41%), Gaps = 27/371 (7%)

Query: 100 NLVI-ACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKA 158
           NLV+ A  ++G +  ++  ++K+   G     + +N ++       R   +  ++ +M  
Sbjct: 185 NLVLNAICEQGCVDEAVGLLRKLAFFGCEADIVSYNAVLKGLCMAKRWGDVEELMDEMVR 244

Query: 159 DKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTV 218
              AP++ TF+ L+     +   E + +V + M      P+   Y  +            
Sbjct: 245 VDCAPNIVTFNTLIGYLCRNGLFERVHEVLAQMSEHGCTPDIRMYATIIDG-------IC 297

Query: 219 AETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPN--------VRSK 270
            E ++E   + +       L   ++ Y  + KG      W   +EL +        +   
Sbjct: 298 KEGHLEVANEILNRMPSYGLKPNVVCYNTVLKGLCSAERWKEAEELLSEMFQKDCPLDDV 357

Query: 271 SYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEM 330
           ++ + ++ F +   V R  EL  +M S   +     Y +VI+ +CK G ID+A  LLK M
Sbjct: 358 TFNILVDFFCQNGLVDRVIELLEQMLSHGCMPDVITYTTVINGFCKEGLIDEAVMLLKSM 417

Query: 331 SMNGCKPNAITYRHLALG-CFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIE 389
           S  GCKPN ++Y  +  G C     V+    A EL  ++I     +   P   T  ++I 
Sbjct: 418 SSCGCKPNTVSYTIVLKGLCSAGRWVD----AEELMSQMIQ----QGCPPNPVTFNTLIN 469

Query: 390 IFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKINDP--NLLRRMILGGARP 447
              +KG V  A  L +++     +     Y+T+I    KA   +    LL  M+  G  P
Sbjct: 470 FLCKKGLVEQAIELLKQMLVNGCSPDLISYSTVIDGLGKAGKTEEALELLNVMVNKGISP 529

Query: 448 DAETYSLLKLA 458
           +   YS +  A
Sbjct: 530 NTIIYSSIACA 540



 Score = 48.9 bits (115), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 70/284 (24%), Positives = 102/284 (35%), Gaps = 45/284 (15%)

Query: 131 LVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSD 190
           + FN L+      G    +  +L QM +    P V T+  ++     +  I+  + +   
Sbjct: 357 VTFNILVDFFCQNGLVDRVIELLEQMLSHGCMPDVITYTTVINGFCKEGLIDEAVMLLKS 416

Query: 191 MKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAK 250
           M     +PN VSY I+      A  +  AE  +  + +     N  T + LI    +L K
Sbjct: 417 MSSCGCKPNTVSYTIVLKGLCSAGRWVDAEELMSQMIQQGCPPNPVTFNTLI---NFLCK 473

Query: 251 GKDLER-IWATVQELPNVRSK---SYVLAIEAFGRIAQVSRAEELWLEM----------- 295
              +E+ I    Q L N  S    SY   I+  G+  +   A EL   M           
Sbjct: 474 KGLVEQAIELLKQMLVNGCSPDLISYSTVIDGLGKAGKTEEALELLNVMVNKGISPNTII 533

Query: 296 ------------------QSVKQLKATE------QYNSVISVYCKNGFIDKASGLLKEMS 331
                             Q    +K T        YN+VIS  CK    D+A      M 
Sbjct: 534 YSSIACALSREGRVNKVIQMFDNIKDTTIRSDAVLYNAVISSLCKRWETDRAIDFFAYMV 593

Query: 332 MNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVR 375
            NGC PN  TY  L  G     L +E   A EL  +L +   +R
Sbjct: 594 SNGCMPNESTYTMLIKGLASEGLAKE---AQELLSELCSRGALR 634


>gi|410110141|gb|AFV61150.1| pentatricopeptide repeat-containing protein 123, partial [Lippia
           turbinata]
          Length = 441

 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 75/341 (21%), Positives = 153/341 (44%), Gaps = 20/341 (5%)

Query: 76  HGISQGEKLFCCIPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNR 135
           HG+    +     P  Y     Y+ L+     +G+   +L +++KM         ++++ 
Sbjct: 1   HGLFDEMRQRALSPDRYT----YSTLITHFGKEGLFDAALSWLQKMEQDQVPGDLVLYSN 56

Query: 136 LIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSE 195
           LI L+          +I  ++K     P +  ++ ++ +            + S+MK + 
Sbjct: 57  LIELSRKLCDYSKAISIFSRLKXSGFXPDLVAYNAMINVFGKAKLFREARSLISEMKTAG 116

Query: 196 VEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLE 255
           V PN  SY  L T +   + +  A +    + +     + +T +++I +YG L   K+ +
Sbjct: 117 VMPNTTSYSTLLTMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEAD 176

Query: 256 RIWATVQEL---PNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVIS 312
           +++  ++++   PNV S + +L +  +G       A  L+  MQ     +    YNS++ 
Sbjct: 177 KLFWGMRKMGIEPNVVSYNTLLRV--YGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMM 234

Query: 313 VYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTK 372
           +Y K    +KA+ L++EM   G +PN+ITY         S ++    K  +L    +  +
Sbjct: 235 IYGKTLEHEKANNLIQEMQSRGVEPNSITY---------STIISIWGKVGKLDRAAMLFQ 285

Query: 373 KVRSSTPWLETTL--SIIEIFAEKGDVGNAENLFEELKKAN 411
           K+RSS   ++  L  ++I  +   G V +A+ L  ELK+ +
Sbjct: 286 KLRSSGVEIDQILFQTMIVAYERAGLVAHAKRLLHELKRPD 326



 Score = 44.7 bits (104), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 53/247 (21%), Positives = 98/247 (39%), Gaps = 45/247 (18%)

Query: 187 VYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYG 246
           ++ +M++  + P+  +Y  L T      L+  A ++++ +E+     +       ++LY 
Sbjct: 3   LFDEMRQRALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDQVPGD-------LVLYS 55

Query: 247 YLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQ 306
            L    +L R           +   Y  AI  F R+       +L               
Sbjct: 56  NLI---ELSR-----------KLCDYSKAISIFSRLKXSGFXPDLV-------------A 88

Query: 307 YNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGM 366
           YN++I+V+ K     +A  L+ EM   G  PN  +Y  L        +  E  K LE   
Sbjct: 89  YNAMINVFGKAKLFREARSLISEMKTAGVMPNTTSYSTLL------TMYVENKKFLE--- 139

Query: 367 KLITTKKVRSSTPWLETTLS--IIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIK 424
            L    ++R     L+ T    +I+++ + G    A+ LF  ++K         YNTL++
Sbjct: 140 ALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTLLR 199

Query: 425 AYVKAKI 431
            Y  A++
Sbjct: 200 VYGDAEL 206


>gi|302818229|ref|XP_002990788.1| hypothetical protein SELMODRAFT_132337 [Selaginella moellendorffii]
 gi|300141349|gb|EFJ08061.1| hypothetical protein SELMODRAFT_132337 [Selaginella moellendorffii]
          Length = 624

 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 73/322 (22%), Positives = 135/322 (41%), Gaps = 25/322 (7%)

Query: 151 NILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAH 210
            +L +MK     P  + ++ L+   +   +     K  ++M ++   P  V+Y  +    
Sbjct: 31  QLLGRMKEMGCVPDDAIYNALISGYSKAKDFGQAFKFLAEMVKNHCLPTVVTYTNIVDGL 90

Query: 211 AVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQEL------ 264
             A     A   ++ +       N  T +V++     L + + L+     ++E+      
Sbjct: 91  CKAGRTKDAVKLLDEMRDKGCSPNIYTYNVIV---EGLCEERKLDEAKKMLEEMAVRGYF 147

Query: 265 PNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKAS 324
           P+V   +Y   I+   +  +V  A +    M     + +   Y +VI+  CK+G +D AS
Sbjct: 148 PDV--VTYNSFIKGLCKCDRVDEARKFLARMPVTPDVVS---YTTVINGLCKSGDLDSAS 202

Query: 325 GLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETT 384
            +L +M+  GC P+ +TY  L  G  K   VE     L+  +KL          P +   
Sbjct: 203 RMLDQMTNRGCTPDVVTYSSLIDGFCKGGEVERAMGLLDSMLKL-------GCRPNMVAY 255

Query: 385 LSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAK--INDPNLLRRMIL 442
            S++      G +G AE++  E+++  +T     YN  I    KA+       +  RM+ 
Sbjct: 256 NSLLGALHRLGHIGKAEDMLVEMERRGFTPDVVSYNACIDGLCKAERVKKAKAVFDRMVE 315

Query: 443 GGARPDAETYSLLKLAEQFQKK 464
            G  P+A +YS+  L E+  KK
Sbjct: 316 RGCTPNASSYSM--LVEELCKK 335



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 84/383 (21%), Positives = 150/383 (39%), Gaps = 45/383 (11%)

Query: 65  YSYLLEFTIKNHGISQGEKLFCCIPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMRVL 124
           + +L E  +KNH          C+P      + Y N+V      G  K +++ + +MR  
Sbjct: 65  FKFLAEM-VKNH----------CLP----TVVTYTNIVDGLCKAGRTKDAVKLLDEMRDK 109

Query: 125 GHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGL 184
           G S +   +N ++       +      +L +M      P V T++  +K       ++  
Sbjct: 110 GCSPNIYTYNVIVEGLCEERKLDEAKKMLEEMAVRGYFPDVVTYNSFIKGLCKCDRVDEA 169

Query: 185 MKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLII- 243
            K    + R  V P+ VSY  +      +     A   ++ +      N   T DV+   
Sbjct: 170 RKF---LARMPVTPDVVSYTTVINGLCKSGDLDSASRMLDQMT-----NRGCTPDVVTYS 221

Query: 244 -LYGYLAKGKDLERIWATVQEL------PNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQ 296
            L     KG ++ER    +  +      PN+ + + +L   A  R+  + +AE++ +EM+
Sbjct: 222 SLIDGFCKGGEVERAMGLLDSMLKLGCRPNMVAYNSLLG--ALHRLGHIGKAEDMLVEME 279

Query: 297 SVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVE 356
                     YN+ I   CK   + KA  +   M   GC PNA +Y         S LVE
Sbjct: 280 RRGFTPDVVSYNACIDGLCKAERVKKAKAVFDRMVERGCTPNASSY---------SMLVE 330

Query: 357 EGFKALELGMKLITTKKVRSSTPWLETTL--SIIEIFAEKGDVGNAENLFEE-LKKANYT 413
           E  K  EL   +   ++ R     ++  L   +++   + G    A  LF + L +    
Sbjct: 331 ELCKKKELDDAITLVEQAREKYQIVDILLYTVLLDGLCKGGRFDEACALFSKVLDEKICE 390

Query: 414 KYTFVYNTLIKAYVKAKINDPNL 436
              F YN ++ ++ K +  D  L
Sbjct: 391 PDVFFYNVMLDSHCKRRQIDKAL 413



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 45/185 (24%), Positives = 80/185 (43%), Gaps = 12/185 (6%)

Query: 271 SYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEM 330
           ++ + +    R  Q+ +A +L   M+ +  +     YN++IS Y K     +A   L EM
Sbjct: 12  TFAILLRGLCRSNQLEKARQLLGRMKEMGCVPDDAIYNALISGYSKAKDFGQAFKFLAEM 71

Query: 331 SMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEI 390
             N C P  +TY ++  G  K+   ++        +KL+   + +  +P + T   I+E 
Sbjct: 72  VKNHCLPTVVTYTNIVDGLCKAGRTKD-------AVKLLDEMRDKGCSPNIYTYNVIVEG 124

Query: 391 FAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKINDP--NLLRRMILGGARPD 448
             E+  +  A+ + EE+    Y      YN+ IK   K    D     L RM +    PD
Sbjct: 125 LCEERKLDEAKKMLEEMAVRGYFPDVVTYNSFIKGLCKCDRVDEARKFLARMPV---TPD 181

Query: 449 AETYS 453
             +Y+
Sbjct: 182 VVSYT 186



 Score = 49.3 bits (116), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 90/457 (19%), Positives = 161/457 (35%), Gaps = 86/457 (18%)

Query: 57  PYRPKELDYSYLLEFTIKNHGISQGEKLF------CCIPKDYQNELLYNNLVIACLDKGV 110
           P  P  + Y+ ++    K+  +    ++        C P    + + Y++L+      G 
Sbjct: 177 PVTPDVVSYTTVINGLCKSGDLDSASRMLDQMTNRGCTP----DVVTYSSLIDGFCKGGE 232

Query: 111 IKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHI 170
           ++ ++  +  M  LG   + + +N L+      G      ++L +M+     P V +++ 
Sbjct: 233 VERAMGLLDSMLKLGCRPNMVAYNSLLGALHRLGHIGKAEDMLVEMERRGFTPDVVSYNA 292

Query: 171 LMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVE-ALEKS 229
            +        ++    V+  M      PN  SY +L       +    A T VE A EK 
Sbjct: 293 CIDGLCKAERVKKAKAVFDRMVERGCTPNASSYSMLVEELCKKKELDDAITLVEQAREK- 351

Query: 230 MTGNNWSTLDVLI--ILYGYLAKGKDLERIWATVQEL-------PNV------------- 267
                +  +D+L+  +L   L KG   +   A   ++       P+V             
Sbjct: 352 -----YQIVDILLYTVLLDGLCKGGRFDEACALFSKVLDEKICEPDVFFYNVMLDSHCKR 406

Query: 268 ---------------RSKSYVLA----IEAFGRIAQVSRAEELWLEMQSVKQLKATEQYN 308
                          R+   V+     +       ++S AE + L M     +     Y 
Sbjct: 407 RQIDKALQIHKQMLERNCCNVVTWNILVHGLCVDDRLSDAETMLLTMVDEGFIPDFVTYG 466

Query: 309 SVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGF--------- 359
           +++   CK G    A  L +E    GC P+ +TY  L  G    N+ EE +         
Sbjct: 467 TLVDAMCKCGKSAAALELFEEAVKGGCVPDVVTYSALITGLVHENMAEEAYLLFTKLDVA 526

Query: 360 ------------KALELGMKL---ITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLF 404
                        + +LG+KL   +    V  +       +S   + AE   +G A  LF
Sbjct: 527 LWNAMILGYAENGSGDLGLKLFVELIESDVEPNARTFGKEISGKLVKAES--LGKARGLF 584

Query: 405 EELKKANYTKYTFVYNTLIKAYVKAKINDPNLLRRMI 441
           +   K  +    FV NTLI  +  AK  D    RR+ 
Sbjct: 585 DRAVKGGFFPDLFVANTLIDVF--AKCGDLEEARRIF 619



 Score = 48.1 bits (113), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 82/436 (18%), Positives = 168/436 (38%), Gaps = 32/436 (7%)

Query: 33  INRLRKLQLNKRALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQGEKLF--CCIPK 90
           ++ L K    K A+++++  +R++   P    Y+ ++E   +   + + +K+     +  
Sbjct: 87  VDGLCKAGRTKDAVKLLDE-MRDKGCSPNIYTYNVIVEGLCEERKLDEAKKMLEEMAVRG 145

Query: 91  DYQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYL-VFNRLIILNSSPGRRKTI 149
            + + + YN+ +        +  + +++ +M V    +SY  V N L       G   + 
Sbjct: 146 YFPDVVTYNSFIKGLCKCDRVDEARKFLARMPVTPDVVSYTTVINGL----CKSGDLDSA 201

Query: 150 PNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSY-CILAT 208
             +L QM      P V T+  L+        +E  M +   M +    PN V+Y  +L  
Sbjct: 202 SRMLDQMTNRGCTPDVVTYSSLIDGFCKGGEVERAMGLLDSMLKLGCRPNMVAYNSLLGA 261

Query: 209 AHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQEL---- 264
            H +  +    +  VE   +  T +  S    +      L K + +++  A    +    
Sbjct: 262 LHRLGHIGKAEDMLVEMERRGFTPDVVSYNACI----DGLCKAERVKKAKAVFDRMVERG 317

Query: 265 --PNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDK 322
             PN  + SY + +E   +  ++  A  L  + +   Q+     Y  ++   CK G  D+
Sbjct: 318 CTPN--ASSYSMLVEELCKKKELDDAITLVEQAREKYQIVDILLYTVLLDGLCKGGRFDE 375

Query: 323 ASGLL-KEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWL 381
           A  L  K +    C+P+   Y  +     K   ++   KAL++  +++  +   +   W 
Sbjct: 376 ACALFSKVLDEKICEPDVFFYNVMLDSHCKRRQID---KALQIHKQMLE-RNCCNVVTWN 431

Query: 382 ETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKINDP--NLLRR 439
                ++        + +AE +   +    +      Y TL+ A  K   +     L   
Sbjct: 432 ----ILVHGLCVDDRLSDAETMLLTMVDEGFIPDFVTYGTLVDAMCKCGKSAAALELFEE 487

Query: 440 MILGGARPDAETYSLL 455
            + GG  PD  TYS L
Sbjct: 488 AVKGGCVPDVVTYSAL 503



 Score = 42.4 bits (98), Expect = 0.54,   Method: Compositional matrix adjust.
 Identities = 86/410 (20%), Positives = 150/410 (36%), Gaps = 33/410 (8%)

Query: 29  IFHSINRLRKLQLNKRALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQGEKLFCCI 88
           I   +   RKL   K+ LE M      R Y P  + Y+  ++   K   + +  K    +
Sbjct: 121 IVEGLCEERKLDEAKKMLEEMAV----RGYFPDVVTYNSFIKGLCKCDRVDEARKFLARM 176

Query: 89  PKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKT 148
           P    + + Y  ++      G +  +   + +M   G +   + ++ LI      G  + 
Sbjct: 177 PV-TPDVVSYTTVINGLCKSGDLDSASRMLDQMTNRGCTPDVVTYSSLIDGFCKGGEVER 235

Query: 149 IPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSY--CIL 206
              +L  M      P++  ++ L+       +I     +  +M+R    P+ VSY  CI 
Sbjct: 236 AMGLLDSMLKLGCRPNMVAYNSLLGALHRLGHIGKAEDMLVEMERRGFTPDVVSYNACID 295

Query: 207 ATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPN 266
               A  R+      +   +E+  T N  S      +L   L K K+L+     V++   
Sbjct: 296 GLCKA-ERVKKAKAVFDRMVERGCTPNASS----YSMLVEELCKKKELDDAITLVEQ--- 347

Query: 267 VRSKSYVLAIEAF----GRIAQVSRAEELWLEMQSVKQLKATEQ----YNSVISVYCKNG 318
            R K  ++ I  +      + +  R +E       V   K  E     YN ++  +CK  
Sbjct: 348 AREKYQIVDILLYTVLLDGLCKGGRFDEACALFSKVLDEKICEPDVFFYNVMLDSHCKRR 407

Query: 319 FIDKASGLLKEMSMNGCKPNAITYRHLALG-CFKSNLVEEGFKALELGMKLITTKKVRSS 377
            IDKA  + K+M    C  N +T+  L  G C    L +           ++ T      
Sbjct: 408 QIDKALQIHKQMLERNC-CNVVTWNILVHGLCVDDRLSD--------AETMLLTMVDEGF 458

Query: 378 TPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYV 427
            P   T  ++++   + G    A  LFEE  K         Y+ LI   V
Sbjct: 459 IPDFVTYGTLVDAMCKCGKSAAALELFEEAVKGGCVPDVVTYSALITGLV 508


>gi|125541439|gb|EAY87834.1| hypothetical protein OsI_09254 [Oryza sativa Indica Group]
          Length = 502

 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 71/299 (23%), Positives = 129/299 (43%), Gaps = 16/299 (5%)

Query: 163 PHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVA-ET 221
           P V T++ L+        +E  + V   M+ + VEP+ V+Y  L    A   L   A + 
Sbjct: 45  PDVVTYNTLLAAHCRAAGLEAGLAVMGRMREAGVEPDAVTYNSLIAGAARRGLPIHALDL 104

Query: 222 YVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQE---LPNVRSKSYVLAIEA 278
           + E L   +  ++WS   ++  L+      +D  R++A + E    P     +Y   ++ 
Sbjct: 105 FDEMLRAGIAPDSWSYNPLMHCLF-RSGHPEDAYRVFADMAEKGIAPC--DTTYNTLLDG 161

Query: 279 FGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPN 338
             R      A  ++  +Q      +   YN++I+  C +G +  A  +L+E+      PN
Sbjct: 162 MFRAGYAMNAYRMFRYLQRAGLPVSIVTYNTMINGLCSSGKVGYARMVLRELGRTDHAPN 221

Query: 339 AITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVG 398
            ITY  +   CFK    E+G   L+  + L+    +    P+     ++I    +KG +G
Sbjct: 222 IITYTAVMKCCFKYGRFEQG---LDTFLSLLDRGYISDVYPY----CTVISALVKKGRLG 274

Query: 399 NAENLFEELKKANYTKYTFVYNTLIKAYVK-AKINDP-NLLRRMILGGARPDAETYSLL 455
            A N  + + +      +  YNTLI    +  K++D   L+  M  GG   D  T+++L
Sbjct: 275 EANNYCDLMLQNGSRLDSVCYNTLIHMRCQEGKLDDAFELVSMMEDGGLESDEYTFAIL 333



 Score = 43.1 bits (100), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 52/256 (20%), Positives = 101/256 (39%), Gaps = 15/256 (5%)

Query: 98  YNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIP----NIL 153
           YN L+ A      ++  L  M +MR  G     + +N LI    +   R+ +P    ++ 
Sbjct: 50  YNTLLAAHCRAAGLEAGLAVMGRMREAGVEPDAVTYNSLI----AGAARRGLPIHALDLF 105

Query: 154 RQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVA 213
            +M    +AP   +++ LM       + E   +V++DM    + P + +Y  L      A
Sbjct: 106 DEMLRAGIAPDSWSYNPLMHCLFRSGHPEDAYRVFADMAEKGIAPCDTTYNTLLDGMFRA 165

Query: 214 RLYTVAETYVEALEKSMTGNNWSTLDVLI---ILYGYLAKGKDLERIWATVQELPNVRSK 270
                A      L+++    +  T + +I      G +   + + R        PN+ + 
Sbjct: 166 GYAMNAYRMFRYLQRAGLPVSIVTYNTMINGLCSSGKVGYARMVLRELGRTDHAPNIITY 225

Query: 271 SYVL-AIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKE 329
           + V+     +GR  Q     + +L +     +     Y +VIS   K G + +A+     
Sbjct: 226 TAVMKCCFKYGRFEQ---GLDTFLSLLDRGYISDVYPYCTVISALVKKGRLGEANNYCDL 282

Query: 330 MSMNGCKPNAITYRHL 345
           M  NG + +++ Y  L
Sbjct: 283 MLQNGSRLDSVCYNTL 298


>gi|168030898|ref|XP_001767959.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162680801|gb|EDQ67234.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 957

 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 96/414 (23%), Positives = 167/414 (40%), Gaps = 56/414 (13%)

Query: 94  NELLYNNLVIACLDK-GVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNI 152
           N +LY  ++I  L+K G  + ++   K MR  GH    L++N +I      GR +    +
Sbjct: 211 NFVLYA-IIIHILNKEGRTEDAVHTFKDMRAAGHLPDELLYNTIICALGKLGRYQESEAL 269

Query: 153 LRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAV 212
              MK   + P   T+ I++ + +         +  ++M+RS    +EV YC +   +  
Sbjct: 270 YLDMKKQGIVPSKFTYTIMINVWSKAGRFASAAETLAEMQRSGCIADEVVYCSIINMYGK 329

Query: 213 ARLYTVAET-----------------------------YVEAL-------EKSM--TGNN 234
           A LY  AE                              + EAL       EK +  T   
Sbjct: 330 AGLYEEAEKIFKEMDTLGLLSHEKSYTSMAKVRAEAGRHAEALKLFDVMAEKGLLTTRMT 389

Query: 235 WSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLE 294
           W+TL    +  G + +     +++  + E  +    +Y   I  + +   V  AE L  E
Sbjct: 390 WNTLLHCFVRIGDVEQAT---KVYNDMVEAGSANVVTYGNMINLYSKFQMVEDAENLLAE 446

Query: 295 MQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNL 354
           M+          Y S + +YC +  IDKA+ +++EM  +G +          LG    + 
Sbjct: 447 MRESGVKPDEYIYGSFVKLYCNSDMIDKATMVVQEMKDDGLESVCNEREMFPLGQALQSP 506

Query: 355 VEEG------FKALELG----MKLITTKKVRSSTPWLET-TLSIIEIFAEKGDVGNAENL 403
           ++         K  E G     +L+  K V +    ++T  + +I ++  +G    A++L
Sbjct: 507 IDTQILNQLLIKRAEAGELREAELLLDKLVEAGGCIVDTAAVLMINLYGRRGLFQKAKSL 566

Query: 404 FEELKKANYTKYTFVYNTLIK--AYVKAKINDPNLLRRMILGGARPDAETYSLL 455
           F  L+K ++    +VYNT+IK  A  K       +  RM   G   DA T S+L
Sbjct: 567 FNSLQKKDHPPSLYVYNTMIKLCAVCKELEEAIFVFDRMEENGRMFDAVTVSIL 620



 Score = 65.5 bits (158), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 91/436 (20%), Positives = 171/436 (39%), Gaps = 79/436 (18%)

Query: 43  KRALEVMEWVIRERPYRPKELDYSYLL------------EFTIK---NHGISQGEKLFCC 87
           ++A E  EW+  + PY P  + Y+ LL            E T+    + G+   E    C
Sbjct: 88  RQAREFFEWMKLQIPYSPSVIAYTTLLGIYGQAGKLTLAEETLSEMLDAGVEPDEVAGGC 147

Query: 88  IPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRK 147
           + + Y     Y+ L             LE+ + MR  G   S  V+  +I+      R  
Sbjct: 148 MLEAYARWERYDTL-------------LEFYEAMRQRGLVPSAHVYRTMIVTLYKAERHS 194

Query: 148 TIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILA 207
               +   +  +K+ P+   + I++ I   +   E  +  + DM+ +   P+E+ Y    
Sbjct: 195 DALMLWEDLLVEKLEPNFVLYAIIIHILNKEGRTEDAVHTFKDMRAAGHLPDELLY---- 250

Query: 208 TAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNV 267
                                          + +I   G L + ++ E ++  +++   V
Sbjct: 251 -------------------------------NTIICALGKLGRYQESEALYLDMKKQGIV 279

Query: 268 RSK-SYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGL 326
            SK +Y + I  + +  + + A E   EMQ    +     Y S+I++Y K G  ++A  +
Sbjct: 280 PSKFTYTIMINVWSKAGRFASAAETLAEMQRSGCIADEVVYCSIINMYGKAGLYEEAEKI 339

Query: 327 LKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMK--LITTKKVRSSTPWLETT 384
            KEM   G   +  +Y  +A    ++    E  K  ++  +  L+TT+          T 
Sbjct: 340 FKEMDTLGLLSHEKSYTSMAKVRAEAGRHAEALKLFDVMAEKGLLTTRM---------TW 390

Query: 385 LSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKI--NDPNLLRRMIL 442
            +++  F   GDV  A  ++ ++ +A  +     Y  +I  Y K ++  +  NLL  M  
Sbjct: 391 NTLLHCFVRIGDVEQATKVYNDMVEAG-SANVVTYGNMINLYSKFQMVEDAENLLAEMRE 449

Query: 443 GGARPDAETY-SLLKL 457
            G +PD   Y S +KL
Sbjct: 450 SGVKPDEYIYGSFVKL 465



 Score = 60.8 bits (146), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 69/340 (20%), Positives = 135/340 (39%), Gaps = 44/340 (12%)

Query: 90  KDYQNEL-LYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKT 148
           KD+   L +YN ++  C     ++ ++    +M   G     +  + L+   +  GR K 
Sbjct: 573 KDHPPSLYVYNTMIKLCAVCKELEEAIFVFDRMEENGRMFDAVTVSILVHAYTKEGRFKD 632

Query: 149 IPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILAT 208
              ++++ K   VA     ++  +K      N++G ++VY +M+ +++EP+  +Y IL +
Sbjct: 633 AAGLMKRAKKVGVAMDTVAYNTSLKANLKSGNLKGALEVYGEMQEADIEPSAKTYTILIS 692

Query: 209 AHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVR 268
             +       A    E L  S  G +      +I  YG   + K+               
Sbjct: 693 LFSKLGDLGRAVQAFEVLNSSEVGADEIAYSQMIHCYGCAGRPKE--------------- 737

Query: 269 SKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQ-YNSVISVYCKNGFIDKASGLL 327
                              A +L+ EM++ K  K  E  YN+++  + + G   +A  LL
Sbjct: 738 -------------------AADLFQEMET-KGFKPNEVIYNNLLDAFARAGLFAEARLLL 777

Query: 328 KEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSI 387
            +M   GC P+++TY  L +  + S       ++      L+   + R   P       +
Sbjct: 778 SDMRRKGCPPSSVTYL-LLMSAYGSKGKPADAES------LLHLMQDRGLYPDCRHYNEV 830

Query: 388 IEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYV 427
           I  +   G + +A  +F ELK          + TL+K ++
Sbjct: 831 IRAYGNVGKLSDACRIFYELKTVGIGLELGCFRTLVKIHL 870



 Score = 52.0 bits (123), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 72/342 (21%), Positives = 142/342 (41%), Gaps = 17/342 (4%)

Query: 89  PKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKT 148
           P D Q   + N L+I   + G ++ +   + K+   G  I       +I L    G  + 
Sbjct: 506 PIDTQ---ILNQLLIKRAEAGELREAELLLDKLVEAGGCIVDTAAVLMINLYGRRGLFQK 562

Query: 149 IPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILAT 208
             ++   ++     P +  ++ ++K+ A    +E  + V+  M+ +    + V+  IL  
Sbjct: 563 AKSLFNSLQKKDHPPSLYVYNTMIKLCAVCKELEEAIFVFDRMEENGRMFDAVTVSILVH 622

Query: 209 AHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKG--KDLERIWATVQELP- 265
           A+     +  A   ++  +K   G    T+     L   L  G  K    ++  +QE   
Sbjct: 623 AYTKEGRFKDAAGLMKRAKK--VGVAMDTVAYNTSLKANLKSGNLKGALEVYGEMQEADI 680

Query: 266 NVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATE-QYNSVISVYCKNGFIDKAS 324
              +K+Y + I  F ++  + RA + + E+ +  ++ A E  Y+ +I  Y   G   +A+
Sbjct: 681 EPSAKTYTILISLFSKLGDLGRAVQAF-EVLNSSEVGADEIAYSQMIHCYGCAGRPKEAA 739

Query: 325 GLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETT 384
            L +EM   G KPN + Y +L     ++ L  E          L++  + +   P   T 
Sbjct: 740 DLFQEMETKGFKPNEVIYNNLLDAFARAGLFAE-------ARLLLSDMRRKGCPPSSVTY 792

Query: 385 LSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAY 426
           L ++  +  KG   +AE+L   ++          YN +I+AY
Sbjct: 793 LLLMSAYGSKGKPADAESLLHLMQDRGLYPDCRHYNEVIRAY 834


>gi|242044666|ref|XP_002460204.1| hypothetical protein SORBIDRAFT_02g024500 [Sorghum bicolor]
 gi|241923581|gb|EER96725.1| hypothetical protein SORBIDRAFT_02g024500 [Sorghum bicolor]
          Length = 637

 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 92/411 (22%), Positives = 163/411 (39%), Gaps = 24/411 (5%)

Query: 33  INRLRKLQLNKRALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQGEKLFCCIPKD- 91
           IN  R      +A E+ + ++  R   P  + Y+ ++    +   I   E+LF  + +  
Sbjct: 185 INACRYQGAVAKAQEMWDQMV-ARQIDPNVITYTSMICVLCEEGCIGDAERLFDAMKEAG 243

Query: 92  -YQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIP 150
              N+  YN L+        +  +    +++   G   + +VF  LI       R     
Sbjct: 244 MRPNQYTYNVLMSGHCQGDDVNSAFVLYQELLNSGLIPNAVVFTTLIDGFCKAKRFSEAK 303

Query: 151 NILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAH 210
           ++ R M    VAP V  ++ LM       + +  + +Y +M R  + P+E +  I+    
Sbjct: 304 DMFRDMPRFGVAPTVPVYNSLMDGAFRSGDAQEALSLYQEMTRLGLCPDEFTCSIVVRGL 363

Query: 211 AVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQEL------ 264
                  VA  ++E + +     N +  + LI  Y    +  +LE   AT   +      
Sbjct: 364 CDGGQIQVAARFLEGVREDGVNLNAAAYNALIDEY---CRNGNLEEALATCTRMTEVGVE 420

Query: 265 PNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKAS 324
           PNV S S +  I+   ++ ++  A  ++ EM +         Y ++I  + KNG ID A 
Sbjct: 421 PNVVSYSSL--IDGHSKLGKMQIAMAIYTEMVAKGIEPNVVTYTALIHGHAKNGGIDAAF 478

Query: 325 GLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKAL--ELGMKLITTKKVRSS----- 377
              KEM  NG  PNAIT   L  G  + N V++  + +    G+K        S+     
Sbjct: 479 RFHKEMIENGISPNAITVSVLVDGLCRENRVQDAVRFVMEHSGIKYSDIHSFFSNFTTEE 538

Query: 378 ---TPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKA 425
               P     +++I      G    A  LF  ++K+     +F Y  LI+ 
Sbjct: 539 EPLIPNSAIYMTLIYGLYLDGQHYEAGKLFSYMRKSGMISDSFTYTLLIRG 589



 Score = 49.3 bits (116), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 45/176 (25%), Positives = 79/176 (44%), Gaps = 9/176 (5%)

Query: 282 IAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAIT 341
           ++Q+   +E     + +  L A    N+V+    K      A  L  EM   G  P+ +T
Sbjct: 121 LSQMGLLDEALYVFRRLWTLPALPACNAVLDGLVKARRSRCAWELFDEMLRRGMVPSVVT 180

Query: 342 YRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAE 401
           Y  L   C     V    KA E+  +++     R   P + T  S+I +  E+G +G+AE
Sbjct: 181 YNTLINACRYQGAVA---KAQEMWDQMVA----RQIDPNVITYTSMICVLCEEGCIGDAE 233

Query: 402 NLFEELKKANYTKYTFVYNTLIKAYVKA-KINDPNLLRRMIL-GGARPDAETYSLL 455
            LF+ +K+A      + YN L+  + +   +N   +L + +L  G  P+A  ++ L
Sbjct: 234 RLFDAMKEAGMRPNQYTYNVLMSGHCQGDDVNSAFVLYQELLNSGLIPNAVVFTTL 289



 Score = 47.0 bits (110), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 68/348 (19%), Positives = 136/348 (39%), Gaps = 40/348 (11%)

Query: 132 VFNRLIILNSSPG------------RRKTIPNILRQMKADKVAPHVSTFHILMKIEANDH 179
           VF RL  L + P             R +    +  +M    + P V T++ L+       
Sbjct: 133 VFRRLWTLPALPACNAVLDGLVKARRSRCAWELFDEMLRRGMVPSVVTYNTLINACRYQG 192

Query: 180 NIEGLMKVYSDMKRSEVEPNEVSY----CILATAHAVARLYTVAETYVEALEKSMTGNNW 235
            +    +++  M   +++PN ++Y    C+L     +      AE   +A++++    N 
Sbjct: 193 AVAKAQEMWDQMVARQIDPNVITYTSMICVLCEEGCIGD----AERLFDAMKEAGMRPNQ 248

Query: 236 STLDVLIILYGYLAKGKDLERIWATVQELPNV----RSKSYVLAIEAFGRIAQVSRAEEL 291
            T +VL  + G+  +G D+   +   QEL N      +  +   I+ F +  + S A+++
Sbjct: 249 YTYNVL--MSGH-CQGDDVNSAFVLYQELLNSGLIPNAVVFTTLIDGFCKAKRFSEAKDM 305

Query: 292 WLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFK 351
           + +M           YNS++    ++G   +A  L +EM+  G  P+  T   +  G   
Sbjct: 306 FRDMPRFGVAPTVPVYNSLMDGAFRSGDAQEALSLYQEMTRLGLCPDEFTCSIVVRGLCD 365

Query: 352 SNLVEEGFKALELGMKLITTKKVRSSTPWLETTL--SIIEIFAEKGDVGNAENLFEELKK 409
              ++   + LE          VR     L      ++I+ +   G++  A      + +
Sbjct: 366 GGQIQVAARFLE---------GVREDGVNLNAAAYNALIDEYCRNGNLEEALATCTRMTE 416

Query: 410 ANYTKYTFVYNTLIKAYVK-AKINDP-NLLRRMILGGARPDAETYSLL 455
                    Y++LI  + K  K+     +   M+  G  P+  TY+ L
Sbjct: 417 VGVEPNVVSYSSLIDGHSKLGKMQIAMAIYTEMVAKGIEPNVVTYTAL 464



 Score = 40.4 bits (93), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 54/262 (20%), Positives = 106/262 (40%), Gaps = 18/262 (6%)

Query: 94  NELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNIL 153
           +E   + +V    D G I+++  +++ +R  G +++   +N LI      G  +      
Sbjct: 352 DEFTCSIVVRGLCDGGQIQVAARFLEGVREDGVNLNAAAYNALIDEYCRNGNLEEALATC 411

Query: 154 RQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVA 213
            +M    V P+V ++  L+   +    ++  M +Y++M    +EPN V+Y  L   HA  
Sbjct: 412 TRMTEVGVEPNVVSYSSLIDGHSKLGKMQIAMAIYTEMVAKGIEPNVVTYTALIHGHAKN 471

Query: 214 RLYTVAETYVEALEKSMTGNNWSTLDVLI---------------ILYGYLAKGKDLERIW 258
                A  + + + ++    N  T+ VL+               ++     K  D+   +
Sbjct: 472 GGIDAAFRFHKEMIENGISPNAITVSVLVDGLCRENRVQDAVRFVMEHSGIKYSDIHSFF 531

Query: 259 A--TVQELPNV-RSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYC 315
           +  T +E P +  S  Y+  I       Q   A +L+  M+    +  +  Y  +I   C
Sbjct: 532 SNFTTEEEPLIPNSAIYMTLIYGLYLDGQHYEAGKLFSYMRKSGMISDSFTYTLLIRGQC 591

Query: 316 KNGFIDKASGLLKEMSMNGCKP 337
             G++  A  L  +M   G KP
Sbjct: 592 MLGYVLNAMMLYADMMKIGVKP 613


>gi|326514834|dbj|BAJ99778.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 609

 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 81/373 (21%), Positives = 142/373 (38%), Gaps = 55/373 (14%)

Query: 98  YNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMK 157
           +N L+      G ++ +L   ++MR  G  +  + +N L+      G       +L  MK
Sbjct: 204 WNALLDGYCKSGDMEAALTAAQRMRTQGVGVDVVGYNTLVAGLCRAGEADAARGMLETMK 263

Query: 158 ADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYT 217
            D V P+V T+   +      + ++    +Y +M R  V P+ V+   L      A  ++
Sbjct: 264 GDGVEPNVVTYTTFIAECCRTNAVDDAFSLYEEMVRMGVLPDVVTLSALVDGLCRAGRFS 323

Query: 218 VAETYVEALEKSMTGNNWSTLDVLI----------------------------ILY---- 245
            A      +EK     N  T   LI                            ++Y    
Sbjct: 324 EAYALFREMEKIGAAPNHVTYCTLIDSLWKARRGSESHGLLGEVVSRGVVMDLVMYTSLM 383

Query: 246 ------GYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVK 299
                 G + + KD+     +    PN    +Y + I+A  R   V  AE++ LEM+   
Sbjct: 384 DWLGKQGKIDEVKDMFHCALSDNHTPN--GVTYTVLIDALCRAGNVDGAEQMLLEMEDKS 441

Query: 300 QLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGF 359
                  ++S+I+   K G + KA+  +++M   G  PN +TY  +  G FK    +E  
Sbjct: 442 VHPNVVTFSSIINGLTKQGLLGKAADYMRKMKERGIDPNVVTYGTVMDGFFK---CQEQE 498

Query: 360 KALELGMKLITTKKVRSSTPWLETTLSIIEIFA----EKGDVGNAENLFEELKKANYTKY 415
            AL+L  +++           +E    I+++      + G +  AE LF ++ K      
Sbjct: 499 SALDLYHEMLCE--------GVEVNKFIVDLLVNGLRKNGKMEEAEALFRDMNKRGMLLD 550

Query: 416 TFVYNTLIKAYVK 428
              Y TLI    K
Sbjct: 551 HVNYTTLIDGLFK 563



 Score = 58.5 bits (140), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 35/125 (28%), Positives = 59/125 (47%), Gaps = 9/125 (7%)

Query: 307 YNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGM 366
           YN++++  C+ G  D A G+L+ M  +G +PN +TY      C ++N V++ F   E   
Sbjct: 239 YNTLVAGLCRAGEADAARGMLETMKGDGVEPNVVTYTTFIAECCRTNAVDDAFSLYE--- 295

Query: 367 KLITTKKVRSST-PWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKA 425
                + VR    P + T  ++++     G    A  LF E++K         Y TLI +
Sbjct: 296 -----EMVRMGVLPDVVTLSALVDGLCRAGRFSEAYALFREMEKIGAAPNHVTYCTLIDS 350

Query: 426 YVKAK 430
             KA+
Sbjct: 351 LWKAR 355


>gi|449463537|ref|XP_004149490.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g02150-like [Cucumis sativus]
          Length = 786

 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 78/366 (21%), Positives = 152/366 (41%), Gaps = 20/366 (5%)

Query: 98  YNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMK 157
           YN ++     +G ++ S     +MR +G S   + +N LI      G  + + ++  +MK
Sbjct: 292 YNVMIDYLCKEGDLENSRRLFVQMREMGLSPDVVTYNSLIDGYGKVGSLEEVASLFNEMK 351

Query: 158 ADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYT 217
                P + T++ L+        +    + +S+MK + ++PN V+Y  L  A     +  
Sbjct: 352 DVGCVPDIITYNGLINCYCKFEKMPRAFEYFSEMKNNGLKPNVVTYSTLIDAFCKEGMMQ 411

Query: 218 VA-ETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSK----SY 272
            A + +V+     +  N ++       L     K  +L   W  + ++     K    +Y
Sbjct: 412 GAIKLFVDMRRTGLLPNEFTYTS----LIDANCKAGNLTEAWKLLNDMLQAGVKLNIVTY 467

Query: 273 VLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSM 332
              ++   +  ++  AEE++  M         + Y +++  Y K   ++ A  +LK+M+ 
Sbjct: 468 TALLDGLCKAGRMIEAEEVFRSMLKDGISPNQQVYTALVHGYIKAERMEDAMKILKQMTE 527

Query: 333 NGCKPNAITYRHLALG-CFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIF 391
              KP+ I Y  +  G C +  L E      E+  + I+   V S+T        II+ +
Sbjct: 528 CNIKPDLILYGSIIWGHCSQRKLEETKLILEEMKSRGISANPVISTT--------IIDAY 579

Query: 392 AEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKIND--PNLLRRMILGGARPDA 449
            + G   +A N F+E++          Y  LI    KA I +   +   RM+  G +P+ 
Sbjct: 580 FKAGKSSDALNFFQEMQDVGVEATIVTYCVLIDGLCKAGIVELAVDYFCRMLSLGLQPNV 639

Query: 450 ETYSLL 455
             Y+ L
Sbjct: 640 AVYTSL 645



 Score = 68.6 bits (166), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 80/379 (21%), Positives = 146/379 (38%), Gaps = 13/379 (3%)

Query: 33  INRLRKLQLNKRALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQGE-KLFCCIPKD 91
           IN   K +   RA E     ++    +P  + YS L++   K  G+ QG  KLF  + + 
Sbjct: 366 INCYCKFEKMPRAFEYFSE-MKNNGLKPNVVTYSTLIDAFCK-EGMMQGAIKLFVDMRRT 423

Query: 92  --YQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTI 149
               NE  Y +L+ A    G +  + + +  M   G  ++ + +  L+      GR    
Sbjct: 424 GLLPNEFTYTSLIDANCKAGNLTEAWKLLNDMLQAGVKLNIVTYTALLDGLCKAGRMIEA 483

Query: 150 PNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATA 209
             + R M  D ++P+   +  L+        +E  MK+   M    ++P+ + Y  +   
Sbjct: 484 EEVFRSMLKDGISPNQQVYTALVHGYIKAERMEDAMKILKQMTECNIKPDLILYGSIIWG 543

Query: 210 HAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELP-NVR 268
           H   R     +  +E ++      N      +I  Y    K  D    +  +Q++     
Sbjct: 544 HCSQRKLEETKLILEEMKSRGISANPVISTTIIDAYFKAGKSSDALNFFQEMQDVGVEAT 603

Query: 269 SKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLK 328
             +Y + I+   +   V  A + +  M S+        Y S+I   CKN  I+ A  L  
Sbjct: 604 IVTYCVLIDGLCKAGIVELAVDYFCRMLSLGLQPNVAVYTSLIDGLCKNNCIESAKKLFD 663

Query: 329 EMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSII 388
           EM   G  P+   +  L  G  K   ++E        + LI+     +    L    S++
Sbjct: 664 EMQCRGMTPDITAFTALIDGNLKHGNLQE-------ALVLISRMTELAIEFDLHVYTSLV 716

Query: 389 EIFAEKGDVGNAENLFEEL 407
             F++ G++  A   F E+
Sbjct: 717 SGFSQCGELHQARKFFNEM 735



 Score = 59.3 bits (142), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 46/187 (24%), Positives = 85/187 (45%), Gaps = 9/187 (4%)

Query: 271 SYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEM 330
           +Y + I+   +   +  +  L+++M+ +        YNS+I  Y K G +++ + L  EM
Sbjct: 291 TYNVMIDYLCKEGDLENSRRLFVQMREMGLSPDVVTYNSLIDGYGKVGSLEEVASLFNEM 350

Query: 331 SMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEI 390
              GC P+ ITY  L + C+        F+ +    +  +  K     P + T  ++I+ 
Sbjct: 351 KDVGCVPDIITYNGL-INCYCK------FEKMPRAFEYFSEMKNNGLKPNVVTYSTLIDA 403

Query: 391 FAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAK--INDPNLLRRMILGGARPD 448
           F ++G +  A  LF ++++       F Y +LI A  KA        LL  M+  G + +
Sbjct: 404 FCKEGMMQGAIKLFVDMRRTGLLPNEFTYTSLIDANCKAGNLTEAWKLLNDMLQAGVKLN 463

Query: 449 AETYSLL 455
             TY+ L
Sbjct: 464 IVTYTAL 470



 Score = 45.8 bits (107), Expect = 0.047,   Method: Compositional matrix adjust.
 Identities = 56/257 (21%), Positives = 97/257 (37%), Gaps = 24/257 (9%)

Query: 202 SYCILATAHAVARLYTVA-ETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWAT 260
           SYCI+      AR+YT A +T  E +  S     +   ++              + +W+T
Sbjct: 165 SYCIIVHLVFRARMYTDAHDTVKEVIMNSRMDMGFPVCNIF-------------DMLWST 211

Query: 261 VQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFI 320
            + +    S  + +    F  +  +  A E +  M++ + L      N ++    K+G  
Sbjct: 212 -RNICVSGSGVFDVLFSVFVELGLLEEANECFSRMRNFRTLPKARSCNFLLHRLSKSGNG 270

Query: 321 DKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPW 380
                   +M   G  P+  TY  +        L +EG   LE   +L    +    +P 
Sbjct: 271 QLVRKFFNDMIGAGIAPSVFTYNVMI-----DYLCKEG--DLENSRRLFVQMREMGLSPD 323

Query: 381 LETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKINDPNL--LR 438
           + T  S+I+ + + G +    +LF E+K          YN LI  Y K +          
Sbjct: 324 VVTYNSLIDGYGKVGSLEEVASLFNEMKDVGCVPDIITYNGLINCYCKFEKMPRAFEYFS 383

Query: 439 RMILGGARPDAETYSLL 455
            M   G +P+  TYS L
Sbjct: 384 EMKNNGLKPNVVTYSTL 400


>gi|359497206|ref|XP_002262853.2| PREDICTED: pentatricopeptide repeat-containing protein At2g20710,
           mitochondrial-like [Vitis vinifera]
          Length = 494

 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 84/366 (22%), Positives = 162/366 (44%), Gaps = 23/366 (6%)

Query: 33  INRLRKLQLNKRALEVMEWVIRER--PYRPKELDYSYLLEFTIKNHGISQGEKLFCCIPK 90
           + RLR L        + +W+  +R  P  P+  D +  +   +K HG+ Q E  F  I K
Sbjct: 93  MQRLRDLGF------ISQWMSDKRYIPLMPR--DIALRMNLILKVHGLEQVENYFNNIHK 144

Query: 91  DYQNELLYNNLV-IACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTI 149
           + +   +Y  L+    L+K V K     M+++R LG   + L +N L+ +    G  + +
Sbjct: 145 NLKTYQVYIALLNCYALEKSVDKAE-AIMQRLRDLGFVRTALGYNTLMNVYYRMGNWEKL 203

Query: 150 PNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEV----SYCI 205
             ++ +M+   +     T  I +   A   NI G+  + +   R E +P  +    SY +
Sbjct: 204 DILMHEMEEKGIFCDKFTLAIRLSAYAAASNIVGIDNIVT---RMESDPRIILDWNSYAV 260

Query: 206 LATAHAVARLYTVAETYVEALEK--SMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQE 263
           +A  +    L       ++ LE+     G+N    D L+ LY    +  +L+R+W   ++
Sbjct: 261 VAHGYLKVGLVDKTLVMMKKLEELIDAKGSN-VAFDNLLKLYAETRQRDELDRVWMLYKK 319

Query: 264 LPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKA 323
              + +K Y+  I +  +   +  AE++  E +S +        N +I  YC+ G  +KA
Sbjct: 320 KEKIYNKGYMAMISSLLKFDDIDAAEKVLEEWESRRLSYDFRVPNFLIDAYCRKGLTEKA 379

Query: 324 SGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLET 383
             L+ ++   G  P   T+ +LA G  + + + +  +AL+  + ++     + S   L T
Sbjct: 380 EALVNKILTKGGNPLVDTWFYLANGYLEDSQIPKAVEALKKAV-VVCPPNWKPSKNTLAT 438

Query: 384 TLSIIE 389
            L  +E
Sbjct: 439 CLEYLE 444


>gi|357159753|ref|XP_003578548.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At4g17915-like [Brachypodium distachyon]
          Length = 460

 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 71/299 (23%), Positives = 129/299 (43%), Gaps = 16/299 (5%)

Query: 163 PHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSY-CILATAHAVARLYTVAET 221
           P V T++ L+        ++    V   M+ + V PN V+Y  ++  A  V       + 
Sbjct: 43  PDVVTYNTLLAAHCRAAGLDAGFAVLRRMREAGVWPNAVTYNSLIVAASRVGLTMRALDL 102

Query: 222 YVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQE---LPNVRSKSYVLAIEA 278
           + E L   +  + WS  +VL+         +D  R++A + E    P   + +Y   ++ 
Sbjct: 103 FDEMLRAGIAPDAWS-YNVLMHCLFRSGHPEDAYRVFADMAEKGVTPC--TTTYNTLLDG 159

Query: 279 FGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPN 338
             +    + A  ++  +Q V        YN++I+  C++G +  A  +L+E+      PN
Sbjct: 160 LFKAGHATNAYRMFRYLQRVGLPVGIVTYNTMINGLCRSGKVGYARMILRELGRTEHTPN 219

Query: 339 AITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVG 398
           A+TY  +   CF+    ++G   LE  + L+    +    P+     ++I    +KG V 
Sbjct: 220 AVTYTTVMKCCFRYGRFDQG---LETFLSLLEGGHIPDVFPY----CTVISALVKKGRVE 272

Query: 399 NAENLFEELKKANYTKYTFVYNTLIKAYVK-AKINDP-NLLRRMILGGARPDAETYSLL 455
            A    E + ++     T  YNTLI    +  K++D   LL  M  GG   D  T+S+L
Sbjct: 273 EANAYSELMIQSGSRLDTACYNTLIHLRCQEGKLDDAFELLSMMEEGGLESDEYTFSIL 331



 Score = 46.6 bits (109), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 70/344 (20%), Positives = 133/344 (38%), Gaps = 16/344 (4%)

Query: 98  YNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMK 157
           YN L+ A      +      +++MR  G   + + +N LI+  S  G      ++  +M 
Sbjct: 48  YNTLLAAHCRAAGLDAGFAVLRRMREAGVWPNAVTYNSLIVAASRVGLTMRALDLFDEML 107

Query: 158 ADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYT 217
              +AP   ++++LM       + E   +V++DM    V P   +Y  L      A   T
Sbjct: 108 RAGIAPDAWSYNVLMHCLFRSGHPEDAYRVFADMAEKGVTPCTTTYNTLLDGLFKAGHAT 167

Query: 218 VAETYVEALEKSMTGNNWSTLDVLI---ILYGYLAKGKDLERIWATVQELPNVRSKSYVL 274
            A      L++        T + +I      G +   + + R     +  PN  + +Y  
Sbjct: 168 NAYRMFRYLQRVGLPVGIVTYNTMINGLCRSGKVGYARMILRELGRTEHTPN--AVTYTT 225

Query: 275 AIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNG 334
            ++   R  +  +  E +L +     +     Y +VIS   K G +++A+   + M  +G
Sbjct: 226 VMKCCFRYGRFDQGLETFLSLLEGGHIPDVFPYCTVISALVKKGRVEEANAYSELMIQSG 285

Query: 335 CKPNAITYRHLA-LGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSI-IEIFA 392
            + +   Y  L  L C +  L +    A EL + ++    + S     E T SI +    
Sbjct: 286 SRLDTACYNTLIHLRCQEGKLDD----AFEL-LSMMEEGGLESD----EYTFSILVNGLC 336

Query: 393 EKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKINDPNL 436
           + G +  AE     ++  +       YN L+ A  K+   D  +
Sbjct: 337 KLGHIEAAEKQLCYMEMRDMESNVVAYNCLVDALCKSDQVDAAI 380



 Score = 40.4 bits (93), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 35/165 (21%), Positives = 70/165 (42%), Gaps = 13/165 (7%)

Query: 295 MQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNL 354
           M   +   +T   N  ++  C++G +++A  +L +  + G  P+ +TY  L     ++  
Sbjct: 1   MARARAQLSTRLMNVCLAALCRSGSLERAESVLIDAILLGMPPDVVTYNTLLAAHCRAAG 60

Query: 355 VEEGFKALELGMKLITTKKVRSSTPWLE--TTLSIIEIFAEKGDVGNAENLFEELKKANY 412
           ++ GF  L         +++R +  W    T  S+I   +  G    A +LF+E+ +A  
Sbjct: 61  LDAGFAVL---------RRMREAGVWPNAVTYNSLIVAASRVGLTMRALDLFDEMLRAGI 111

Query: 413 TKYTFVYNTLIKAYVKAKINDP--NLLRRMILGGARPDAETYSLL 455
               + YN L+    ++   +    +   M   G  P   TY+ L
Sbjct: 112 APDAWSYNVLMHCLFRSGHPEDAYRVFADMAEKGVTPCTTTYNTL 156



 Score = 40.4 bits (93), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 58/315 (18%), Positives = 122/315 (38%), Gaps = 10/315 (3%)

Query: 38  KLQLNKRALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQGEKLFCCIPKDYQNELL 97
           ++ L  RAL++ + ++R     P    Y+ L+    ++       ++F  + +       
Sbjct: 92  RVGLTMRALDLFDEMLRA-GIAPDAWSYNVLMHCLFRSGHPEDAYRVFADMAEKGVTPCT 150

Query: 98  --YNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQ 155
             YN L+      G    +    + ++ +G  +  + +N +I      G+      ILR+
Sbjct: 151 TTYNTLLDGLFKAGHATNAYRMFRYLQRVGLPVGIVTYNTMINGLCRSGKVGYARMILRE 210

Query: 156 MKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARL 215
           +   +  P+  T+  +MK        +  ++ +  +      P+   YC + +A      
Sbjct: 211 LGRTEHTPNAVTYTTVMKCCFRYGRFDQGLETFLSLLEGGHIPDVFPYCTVISALVKKGR 270

Query: 216 YTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSKSYVLA 275
              A  Y E + +S +  + +  + LI L     K  D   + + ++E   + S  Y  +
Sbjct: 271 VEEANAYSELMIQSGSRLDTACYNTLIHLRCQEGKLDDAFELLSMMEE-GGLESDEYTFS 329

Query: 276 IEAFG--RIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMN 333
           I   G  ++  +  AE+    M+          YN ++   CK+  +D A  LL +M + 
Sbjct: 330 ILVNGLCKLGHIEAAEKQLCYMEMRDMESNVVAYNCLVDALCKSDQVDAAIRLLHDMKLK 389

Query: 334 GCKPNAITYRHLALG 348
               +  TY  L  G
Sbjct: 390 ----DDFTYTSLVHG 400


>gi|302753732|ref|XP_002960290.1| hypothetical protein SELMODRAFT_73828 [Selaginella moellendorffii]
 gi|300171229|gb|EFJ37829.1| hypothetical protein SELMODRAFT_73828 [Selaginella moellendorffii]
          Length = 546

 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 90/445 (20%), Positives = 198/445 (44%), Gaps = 33/445 (7%)

Query: 43  KRALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQGEKLFC-CIPKDY-QNELLYNN 100
           +R+L + +W+I +  Y P    Y+ +L+  ++       E L    + KD   ++  ++ 
Sbjct: 6   QRSLALHDWMIEKGGYAPSIFAYNVVLKNVLRARQWELAEGLVLEMVEKDLVPDKFTFST 65

Query: 101 LVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADK 160
           L+        ++ ++ ++++M   G     ++F+ LI L           ++  ++KA  
Sbjct: 66  LISGYGRANRLEDAMGWLQEMEAGGIKPDLVIFSTLIELAGKVKDYSKATSLFSKLKASG 125

Query: 161 VAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAE 220
           +AP    ++ ++ +       +    + ++MK + + P+ VSY IL  A+A ++ Y  A+
Sbjct: 126 IAPDKVIYNSMINLYGKAKFYKEAQGLLAEMKEAGLMPDTVSYTILINAYAESQKYLEAK 185

Query: 221 TYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSK--SYVLAIEA 278
                ++      + +T +++I +YG L   +D E ++ ++ +   ++    +Y   I+ 
Sbjct: 186 QVFLEMKTKGIQLDVTTCNMMIDVYGKLEMVRDAEELFWSMSKTLGIQQNVVTYNTMIKV 245

Query: 279 FGRIAQVSRAEELWLEMQSVKQLKATE-QYNSVISVYCKNGFIDKASGLLKEMSMNGCKP 337
           +     +S A  ++  MQ+   ++     YN+++ ++      +KA  L+++M   G +P
Sbjct: 246 YKEAELLSEAFNVFYYMQNKGGVEPNVITYNTILFLHGLTLQHEKAMRLVRKMQQRGIEP 305

Query: 338 NAITYRHL------------ALGCFKSNLVEEGFKALELGMKLITTKKVRSS-------- 377
           NA+TY  L            A   FK+ L E+GF+  E+  + +     R+         
Sbjct: 306 NAVTYSTLISIYGKTGKYDRAAFLFKT-LREKGFEMDEILYQSMIVVYERAGLVAHAKRL 364

Query: 378 -----TPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAK-- 430
                 P +    + I I A+   +  A  L+    +A   K +  Y ++I+ +V+ K  
Sbjct: 365 LEELKQPDIVPRDTAISILAKAEKLEEAAKLYWRSHEAGEIKESVTYKSMIQLFVRNKRS 424

Query: 431 INDPNLLRRMILGGARPDAETYSLL 455
            N  ++   M   G  PD+ET  +L
Sbjct: 425 KNAIDVFENMRESGFLPDSETTVVL 449


>gi|356529495|ref|XP_003533326.1| PREDICTED: uncharacterized protein LOC100779660 [Glycine max]
          Length = 1205

 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 78/367 (21%), Positives = 150/367 (40%), Gaps = 43/367 (11%)

Query: 94  NELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNIL 153
           N ++Y+ ++ A     ++  +     +M V G S   + ++ LI      G+ K    +L
Sbjct: 198 NVVMYSTIIDALCKYQLVSEAYGLFSEMTVKGISADVVTYSTLIYGFCIEGKLKEAIGLL 257

Query: 154 RQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVA 213
            +M    + P+V T++IL+     +  ++    V + M ++ V+P+ ++Y  L       
Sbjct: 258 NEMVLKTINPNVYTYNILVDALCKEGKVKEAKSVLAVMLKACVKPDVITYSTL------- 310

Query: 214 RLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSKSYV 273
                                   +D   ++Y  + K + +    + +   P+V   +Y 
Sbjct: 311 ------------------------MDGYFLVY-EVKKAQHVFNAMSLMGVTPDVH--TYT 343

Query: 274 LAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMN 333
           + I  F +   V  A  L+ EM     +     Y+S+I   CK+G I     L+ EM   
Sbjct: 344 ILINGFCKNKMVDEALNLFKEMHQKNMVPGIVTYSSLIDGLCKSGRIPYVWDLIDEMHDR 403

Query: 334 GCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAE 393
           G   N ITY  L  G  K+         L+  + L    K +   P   T   +++   +
Sbjct: 404 GQPANVITYSSLIDGLCKNG-------HLDRAIALFNKMKDQGIRPNTFTFTILLDGLCK 456

Query: 394 KGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKINDPNL--LRRMILGGARPDAET 451
            G + +A+ +F++L    Y    + YN +I  + K  + +  L  L +M   G  PDA T
Sbjct: 457 GGRLKDAQEVFQDLLTKGYHLNVYTYNVMIDGHCKQGLLEEALTMLSKMEDNGCIPDAVT 516

Query: 452 YSLLKLA 458
           + ++ +A
Sbjct: 517 FEIIIIA 523



 Score = 58.5 bits (140), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 73/374 (19%), Positives = 158/374 (42%), Gaps = 39/374 (10%)

Query: 18  MREGFPVHRGEIFHSINRLRKLQLNKRALEVMEWVIRERPYRPKELDYSYLLEFTIKNHG 77
           + +GF +++      IN + K+   + A+++++  I  R  +P  + YS +++   K   
Sbjct: 156 LAQGFQLNQVSYGTLINGVCKIGDTRAAIKLLQK-IDGRLTKPNVVMYSTIIDALCKYQL 214

Query: 78  ISQGEKLFC--CIPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNR 135
           +S+   LF    +     + + Y+ L+     +G +K ++  + +M +   + +   +N 
Sbjct: 215 VSEAYGLFSEMTVKGISADVVTYSTLIYGFCIEGKLKEAIGLLNEMVLKTINPNVYTYNI 274

Query: 136 LIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSE 195
           L+      G+ K   ++L  M    V P V T+  LM      + ++    V++ M    
Sbjct: 275 LVDALCKEGKVKEAKSVLAVMLKACVKPDVITYSTLMDGYFLVYEVKKAQHVFNAMSLMG 334

Query: 196 VEPNEVSYCILATAHAVARLYTVA-ETYVEALEKSMTGN-------------------NW 235
           V P+  +Y IL       ++   A   + E  +K+M                       W
Sbjct: 335 VTPDVHTYTILINGFCKNKMVDEALNLFKEMHQKNMVPGIVTYSSLIDGLCKSGRIPYVW 394

Query: 236 STLDVL--------IILYGYLAKG----KDLERIWATVQELPN--VRSKSYVLAI--EAF 279
             +D +        +I Y  L  G      L+R  A   ++ +  +R  ++   I  +  
Sbjct: 395 DLIDEMHDRGQPANVITYSSLIDGLCKNGHLDRAIALFNKMKDQGIRPNTFTFTILLDGL 454

Query: 280 GRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNA 339
            +  ++  A+E++ ++ +         YN +I  +CK G +++A  +L +M  NGC P+A
Sbjct: 455 CKGGRLKDAQEVFQDLLTKGYHLNVYTYNVMIDGHCKQGLLEEALTMLSKMEDNGCIPDA 514

Query: 340 ITYRHLALGCFKSN 353
           +T+  + +  FK +
Sbjct: 515 VTFEIIIIALFKKD 528



 Score = 38.9 bits (89), Expect = 6.1,   Method: Compositional matrix adjust.
 Identities = 25/87 (28%), Positives = 37/87 (42%), Gaps = 1/87 (1%)

Query: 271  SYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEM 330
            SY   I    +I     A +L  ++           YN++I   CK+  + KA GL  EM
Sbjct: 1033 SYGTLINGVCKIGDTRAAIKLLRKIDGRLTKPDVVMYNTIIDALCKHQLVSKAYGLFFEM 1092

Query: 331  SMNGCKPNAITYRHLALG-CFKSNLVE 356
            ++ G   + +TY  L  G C    L E
Sbjct: 1093 NVKGISADVVTYNTLIYGFCIVGKLKE 1119



 Score = 38.9 bits (89), Expect = 6.2,   Method: Compositional matrix adjust.
 Identities = 42/178 (23%), Positives = 73/178 (41%), Gaps = 30/178 (16%)

Query: 308  NSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALG-C----------FKSNLVE 356
            N +I+ +C  G I     +L ++   G  P+ IT+  L  G C          F   L+ 
Sbjct: 965  NILINCFCHMGQITFNFSILAKILKRGYHPDTITFTTLINGLCLKGQVNKALHFHDKLLA 1024

Query: 357  EGFKALEL-----------------GMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGN 399
            +GF+  ++                  +KL+     R + P +    +II+   +   V  
Sbjct: 1025 QGFQLNQVSYGTLINGVCKIGDTRAAIKLLRKIDGRLTKPDVVMYNTIIDALCKHQLVSK 1084

Query: 400  AENLFEELKKANYTKYTFVYNTLIKAY-VKAKINDP-NLLRRMILGGARPDAETYSLL 455
            A  LF E+     +     YNTLI  + +  K+ +   LL +M+L    P+  TY++L
Sbjct: 1085 AYGLFFEMNVKGISADVVTYNTLIYGFCIVGKLKEAIGLLNKMVLKTINPNVRTYNIL 1142


>gi|224130706|ref|XP_002328356.1| predicted protein [Populus trichocarpa]
 gi|222838071|gb|EEE76436.1| predicted protein [Populus trichocarpa]
          Length = 613

 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 78/396 (19%), Positives = 168/396 (42%), Gaps = 25/396 (6%)

Query: 43  KRALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQGEKLF------CCIPKDYQNEL 96
           K A+E+   +++ R + P  + Y+ ++    K    S    +F       C P    N +
Sbjct: 180 KEAVELFNEMVK-RGHEPNVISYTTVINGLCKTGNTSMAVDVFKKMEQNGCKP----NVV 234

Query: 97  LYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQM 156
            Y+ ++ +     ++  ++E++ +M   G   +   +N ++    + G+      + ++M
Sbjct: 235 TYSTIIDSLCKDRLVNDAMEFLSEMVERGIPPNVFTYNSIVHGFCNLGQLNEATRLFKEM 294

Query: 157 KADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLY 216
               V P+  TF IL+     +  +     V+  M    VEP+  +Y  L   + + RL 
Sbjct: 295 VGRDVMPNTVTFTILVDGLCKEGMVSEARLVFETMTEKGVEPDISTYNALMDGYCLQRLM 354

Query: 217 TVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQEL----PNVRSKSY 272
             A+   E + +        + ++LI   GY  K + ++   + + E+     N  + +Y
Sbjct: 355 NEAKKVFEIMIRKGCAPGAHSYNILI--NGY-CKSRRMDEAKSLLAEMYHKALNPDTVTY 411

Query: 273 VLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSM 332
              ++   ++ +   A  L+ EM S         Y  ++  +CK+G +D+A  LLK M  
Sbjct: 412 STLMQGLCQLGRPKEALNLFKEMCSYGPHPNLVTYVILLDGFCKHGHLDEALKLLKSMKE 471

Query: 333 NGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFA 392
              +PN + Y  L  G F +         LE+  +L +      + P + T   +I+   
Sbjct: 472 KKLEPNIVHYTILIEGMFIAG-------KLEVAKELFSKLFGDGTRPDIRTYTVMIKGLL 524

Query: 393 EKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVK 428
           ++G    A +LF +++   +   +  YN +I+ +++
Sbjct: 525 KEGLSDEAYDLFRKMEDDGFLPNSCSYNVMIQGFLQ 560



 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 79/373 (21%), Positives = 163/373 (43%), Gaps = 22/373 (5%)

Query: 92  YQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPN 151
           + + + +N L+    ++G IK ++E   +M   GH  + + +  +I      G      +
Sbjct: 160 HPDAITFNALINGLCNEGKIKEAVELFNEMVKRGHEPNVISYTTVINGLCKTGNTSMAVD 219

Query: 152 ILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHA 211
           + ++M+ +   P+V T+  ++     D  +   M+  S+M    + PN  +Y   +  H 
Sbjct: 220 VFKKMEQNGCKPNVVTYSTIIDSLCKDRLVNDAMEFLSEMVERGIPPNVFTYN--SIVHG 277

Query: 212 VARLYTVAETYVEALEKSMTGNNW--STLDVLIILYGYLAKG--KDLERIWATVQEL--- 264
              L  + E     L K M G +   +T+   I++ G   +G   +   ++ T+ E    
Sbjct: 278 FCNLGQLNEA--TRLFKEMVGRDVMPNTVTFTILVDGLCKEGMVSEARLVFETMTEKGVE 335

Query: 265 PNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKAS 324
           P++ + + ++      R+  ++ A++++  M           YN +I+ YCK+  +D+A 
Sbjct: 336 PDISTYNALMDGYCLQRL--MNEAKKVFEIMIRKGCAPGAHSYNILINGYCKSRRMDEAK 393

Query: 325 GLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETT 384
            LL EM      P+ +TY  L  G  +    +E   AL L  ++ +        P L T 
Sbjct: 394 SLLAEMYHKALNPDTVTYSTLMQGLCQLGRPKE---ALNLFKEMCS----YGPHPNLVTY 446

Query: 385 LSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKA-YVKAKIN-DPNLLRRMIL 442
           + +++ F + G +  A  L + +K+         Y  LI+  ++  K+     L  ++  
Sbjct: 447 VILLDGFCKHGHLDEALKLLKSMKEKKLEPNIVHYTILIEGMFIAGKLEVAKELFSKLFG 506

Query: 443 GGARPDAETYSLL 455
            G RPD  TY+++
Sbjct: 507 DGTRPDIRTYTVM 519



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 66/315 (20%), Positives = 132/315 (41%), Gaps = 24/315 (7%)

Query: 151 NILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAH 210
           ++L +M    + P   TF+ L+    N+  I+  ++++++M +   EPN +SY  +    
Sbjct: 149 SVLGKMFKLGIHPDAITFNALINGLCNEGKIKEAVELFNEMVKRGHEPNVISYTTVINGL 208

Query: 211 AVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQEL------ 264
                 ++A    + +E++    N  T   +I     L K + +      + E+      
Sbjct: 209 CKTGNTSMAVDVFKKMEQNGCKPNVVTYSTII---DSLCKDRLVNDAMEFLSEMVERGIP 265

Query: 265 PNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKAS 324
           PNV +  Y   +  F  + Q++ A  L+ EM     +  T  +  ++   CK G + +A 
Sbjct: 266 PNVFT--YNSIVHGFCNLGQLNEATRLFKEMVGRDVMPNTVTFTILVDGLCKEGMVSEAR 323

Query: 325 GLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETT 384
            + + M+  G +P+  TY  L  G     L+ E  K  E+ ++       +   P   + 
Sbjct: 324 LVFETMTEKGVEPDISTYNALMDGYCLQRLMNEAKKVFEIMIR-------KGCAPGAHSY 376

Query: 385 LSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKINDP----NLLRRM 440
             +I  + +   +  A++L  E+        T  Y+TL++     ++  P    NL + M
Sbjct: 377 NILINGYCKSRRMDEAKSLLAEMYHKALNPDTVTYSTLMQGL--CQLGRPKEALNLFKEM 434

Query: 441 ILGGARPDAETYSLL 455
              G  P+  TY +L
Sbjct: 435 CSYGPHPNLVTYVIL 449



 Score = 45.4 bits (106), Expect = 0.056,   Method: Compositional matrix adjust.
 Identities = 40/178 (22%), Positives = 80/178 (44%), Gaps = 9/178 (5%)

Query: 278 AFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKP 337
           +F +  Q S    L  +M   +        N +I+  C+   +D +  +L +M   G  P
Sbjct: 102 SFAKKKQYSTVVSLCNQMDLFRVTHNVYSLNILINCLCRLNHVDFSVSVLGKMFKLGIHP 161

Query: 338 NAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDV 397
           +AIT+  L  G      ++E   A+EL  +++     R   P + +  ++I    + G+ 
Sbjct: 162 DAITFNALINGLCNEGKIKE---AVELFNEMVK----RGHEPNVISYTTVINGLCKTGNT 214

Query: 398 GNAENLFEELKKANYTKYTFVYNTLIKAYVKAK-INDP-NLLRRMILGGARPDAETYS 453
             A ++F+++++         Y+T+I +  K + +ND    L  M+  G  P+  TY+
Sbjct: 215 SMAVDVFKKMEQNGCKPNVVTYSTIIDSLCKDRLVNDAMEFLSEMVERGIPPNVFTYN 272


>gi|262316881|emb|CAZ44330.1| homologue to restoring pentatricopeptide repeat protein [Raphanus
           sativus]
          Length = 686

 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 104/483 (21%), Positives = 193/483 (39%), Gaps = 80/483 (16%)

Query: 30  FHSINRLRKLQLNKRALEVMEWVIRERPYRPKELDYSYLLEFTIK----NHGISQGEKL- 84
           FH I  L        A+++  +++R RP  P  +D+  L+   ++    +  IS  +K+ 
Sbjct: 56  FHEIKGLDD------AIDLFGYMVRSRPL-PSVIDFCKLMGVVVRMGRPDVVISLHKKME 108

Query: 85  FCCIPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPG 144
              +P +  +  +      +C     +  +L    K+  LG   + + FN L+       
Sbjct: 109 MLRMPCNAYSFTILMKCFCSC---SKLPFALSTFGKITKLGFHPTVVTFNTLLHGLCVED 165

Query: 145 RRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSY- 203
           R     ++  QM      P+V TF  LM     +  +   + +   M    ++PN+++Y 
Sbjct: 166 RISEALDLFHQM----CKPNVVTFTTLMNGLCREGRVVEAVALLDRMLEDGLQPNQITYG 221

Query: 204 ------CILA-TAHAVARLYTVAE------------TYVEALEKSMTGNNWSTLDV---- 240
                 C +  T  A+  L  + E            T ++ L K    ++   L +    
Sbjct: 222 TIVDGMCKMGDTVSALNLLRKMEEVSHIIPNVVIYNTIIDGLWKDGRHSDAHNLFIEMQE 281

Query: 241 -----LIILYGYLAKGKDLERIWATVQEL----------PNVRSKSYVLAIEAFGRIAQV 285
                 I+ Y  +  G  +   W+  ++L          P+V + S +  I AF +  + 
Sbjct: 282 KEIFPDIVTYNCMINGFCISGRWSDAEQLLQEMLERKINPDVVTFSAL--INAFVKEGKF 339

Query: 286 SRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHL 345
             AEEL+ EM     + +T  Y+S+I  +CK   +D A  +       GC P+ IT+  L
Sbjct: 340 FEAEELYDEMLPRSIIPSTVTYSSMIDGFCKQNRLDAAEHMFYLTPTKGCSPDIITFNTL 399

Query: 346 ALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFE 405
             G  ++  V++G K L    ++     V ++  +  TTL  I  F + GD+  A++L +
Sbjct: 400 IAGYCRAKRVDDGIKLLH---EMTEAGLVANTITY--TTL--IHGFCQVGDLNAAQDLLQ 452

Query: 406 ELKKANYTKYTFVYNTLIKAYVK-AKINDP-NLLRRM-----------ILGGARPDAETY 452
           E+  +         NTL+       K+ D   + + M              G  PD +TY
Sbjct: 453 EMISSGVCPNVVTCNTLLDGLCDNGKLKDALEMFKAMQKSKMDIDASRPFNGVEPDVQTY 512

Query: 453 SLL 455
           ++L
Sbjct: 513 NIL 515



 Score = 67.4 bits (163), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 91/413 (22%), Positives = 169/413 (40%), Gaps = 59/413 (14%)

Query: 94  NELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSI-SYLVFNRLIILNSSPGRRKTIPNI 152
           N++ Y  +V      G    +L  ++KM  + H I + +++N +I      GR     N+
Sbjct: 216 NQITYGTIVDGMCKMGDTVSALNLLRKMEEVSHIIPNVVIYNTIIDGLWKDGRHSDAHNL 275

Query: 153 LRQMKADKVAPHVSTFHILMK---IEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATA 209
             +M+  ++ P + T++ ++    I     + E L++   +M   ++ P+ V++  L  A
Sbjct: 276 FIEMQEKEIFPDIVTYNCMINGFCISGRWSDAEQLLQ---EMLERKINPDVVTFSALINA 332

Query: 210 HAV-ARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGY-----LAKGKDLERIWATVQE 263
                + +   E Y E L +S+     ST+    ++ G+     L   + +  +  T   
Sbjct: 333 FVKEGKFFEAEELYDEMLPRSIIP---STVTYSSMIDGFCKQNRLDAAEHMFYLTPTKGC 389

Query: 264 LPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKA 323
            P++ + + ++A   + R  +V    +L  EM     +  T  Y ++I  +C+ G ++ A
Sbjct: 390 SPDIITFNTLIA--GYCRAKRVDDGIKLLHEMTEAGLVANTITYTTLIHGFCQVGDLNAA 447

Query: 324 SGLLKEMSMNGCKPNAITYRHLALG-CFKSNLVE--EGFKALE----------------- 363
             LL+EM  +G  PN +T   L  G C    L +  E FKA++                 
Sbjct: 448 QDLLQEMISSGVCPNVVTCNTLLDGLCDNGKLKDALEMFKAMQKSKMDIDASRPFNGVEP 507

Query: 364 -------LGMKLITTKKV------------RSSTPWLETTLSIIEIFAEKGDVGNAENLF 404
                  L   LI   K             R   P   T  S+I+   ++  +  A  +F
Sbjct: 508 DVQTYNILICGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMF 567

Query: 405 EELKKANYTKYTFVYNTLIKAYVKAKINDPNLLRRMILG--GARPDAETYSLL 455
           + +   +++     +NTLI  Y KA + D  L     +G  G   DA TY  L
Sbjct: 568 DSMGSKSFSPDVVTFNTLITGYCKAGMVDDGLELFCEMGQRGIVADAITYITL 620



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 78/385 (20%), Positives = 159/385 (41%), Gaps = 80/385 (20%)

Query: 56  RPYRPKELDYSYLLEFTIKNHGISQGEKLFCCIP-KDYQNELLYNNLVIA--C----LDK 108
           R   P  + YS +++   K + +   E +F   P K    +++  N +IA  C    +D 
Sbjct: 352 RSIIPSTVTYSSMIDGFCKQNRLDAAEHMFYLTPTKGCSPDIITFNTLIAGYCRAKRVDD 411

Query: 109 GVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTF 168
           G IKL L  M +  ++ ++I+Y     LI      G      ++L++M +  V P+V T 
Sbjct: 412 G-IKL-LHEMTEAGLVANTITY---TTLIHGFCQVGDLNAAQDLLQEMISSGVCPNVVTC 466

Query: 169 HILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEK 228
           + L+    ++  ++  ++++  M++S+++ +             +R +   E  V+    
Sbjct: 467 NTLLDGLCDNGKLKDALEMFKAMQKSKMDID------------ASRPFNGVEPDVQTYN- 513

Query: 229 SMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRA 288
                        I++ G + +GK LE                                A
Sbjct: 514 -------------ILICGLINEGKFLE--------------------------------A 528

Query: 289 EELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALG 348
           EEL+ EM     +  T  Y+S+I   CK   +D+A+ +   M      P+ +T+  L  G
Sbjct: 529 EELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFDSMGSKSFSPDVVTFNTLITG 588

Query: 349 CFKSNLVEEGFKAL-ELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEEL 407
             K+ +V++G +   E+G + I    +        T +++I  F +  ++  A ++F+E+
Sbjct: 589 YCKAGMVDDGLELFCEMGQRGIVADAI--------TYITLIYGFRKVDNIDGALDIFQEM 640

Query: 408 KKAN-YTKYTFVYNTLIKAYVKAKI 431
             +  Y     + N L   + K ++
Sbjct: 641 ISSGVYPDTITIRNMLTGLWSKEEL 665


>gi|297807691|ref|XP_002871729.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297317566|gb|EFH47988.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 504

 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 72/321 (22%), Positives = 147/321 (45%), Gaps = 16/321 (4%)

Query: 94  NELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNIL 153
           N ++YN ++        +  +L+ + +M V G     + +N LI    + GR      ++
Sbjct: 185 NVVIYNTIIDGLCKSKQVDNALDLLNRMEVDGIRPDAVTYNSLISGLCNSGRWDDATRMV 244

Query: 154 RQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAV- 212
             M   ++ P V TF+ L+     +  I    ++Y +M R  ++P+ V+Y +L     + 
Sbjct: 245 SCMTKREIYPDVFTFNALIDACVKEGRISEAEELYEEMIRRSLDPDIVTYSLLIYGLCMY 304

Query: 213 ARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLE---RIWATVQELPNVRS 269
           +RL    + +   + K   G     +   I++ GY  K K +E   +++  + +   VR+
Sbjct: 305 SRLDEAEQMFGFMVSK---GCFPDVVTYSILINGY-CKSKKVEHGMKLFCEMSQRGVVRN 360

Query: 270 K-SYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLK 328
             +Y + I+ + R  +++ AEE++  M           YN ++   C NG I+KA  +L 
Sbjct: 361 TVTYTVLIQGYCRAGKLNVAEEIFKWMVFCGVPPNIITYNVLLHGLCDNGKIEKALVILA 420

Query: 329 EMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSII 388
           +M  +G   + +TY  +  G  K+  V + +        L  +  ++  TP + T  +++
Sbjct: 421 DMQKSGMDADIVTYNIIIRGMCKAGEVADAW-------DLYCSLNLKGLTPDIWTYTAMM 473

Query: 389 EIFAEKGDVGNAENLFEELKK 409
               +KG  G A+ LF ++K+
Sbjct: 474 LGLYKKGLRGEADALFRKMKE 494



 Score = 52.4 bits (124), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 60/286 (20%), Positives = 115/286 (40%), Gaps = 9/286 (3%)

Query: 59  RPKELDYSYLLEFTIKNHGISQGEKLFCCIPKD--YQNELLYNNLVIACLDKGVIKLSLE 116
           RP  + Y+ L+     +       ++  C+ K   Y +   +N L+ AC+ +G I  + E
Sbjct: 218 RPDAVTYNSLISGLCNSGRWDDATRMVSCMTKREIYPDVFTFNALIDACVKEGRISEAEE 277

Query: 117 YMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEA 176
             ++M         + ++ LI       R      +   M +    P V T+ IL+    
Sbjct: 278 LYEEMIRRSLDPDIVTYSLLIYGLCMYSRLDEAEQMFGFMVSKGCFPDVVTYSILINGYC 337

Query: 177 NDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWS 236
               +E  MK++ +M +  V  N V+Y +L   +  A    VAE   + +       N  
Sbjct: 338 KSKKVEHGMKLFCEMSQRGVVRNTVTYTVLIQGYCRAGKLNVAEEIFKWMVFCGVPPNII 397

Query: 237 TLDVLIILYGYLAKGKDLERIWATVQELP----NVRSKSYVLAIEAFGRIAQVSRAEELW 292
           T +VL  L+G    GK +E+    + ++     +    +Y + I    +  +V+ A +L+
Sbjct: 398 TYNVL--LHGLCDNGK-IEKALVILADMQKSGMDADIVTYNIIIRGMCKAGEVADAWDLY 454

Query: 293 LEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPN 338
             +           Y +++    K G   +A  L ++M  +G  PN
Sbjct: 455 CSLNLKGLTPDIWTYTAMMLGLYKKGLRGEADALFRKMKEDGILPN 500



 Score = 49.3 bits (116), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 51/203 (25%), Positives = 82/203 (40%), Gaps = 12/203 (5%)

Query: 257 IWATVQEL--PNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVY 314
           +W  +Q L  P+      +L +  F R +Q+S A     +M  +        + S+++ +
Sbjct: 103 LWEQMQMLGIPHNLCTCNIL-LNCFCRCSQLSLALSFLGKMMKLGHEPDIVTFGSLLNGF 161

Query: 315 CKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKV 374
           C+   I  A  +   M   G +PN + Y  +  G  KS  V+         + L+   +V
Sbjct: 162 CRGDRIYDALYMFDRMVEMGYEPNVVIYNTIIDGLCKSKQVDN-------ALDLLNRMEV 214

Query: 375 RSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVK-AKIND 433
               P   T  S+I      G   +A  +   + K       F +N LI A VK  +I++
Sbjct: 215 DGIRPDAVTYNSLISGLCNSGRWDDATRMVSCMTKREIYPDVFTFNALIDACVKEGRISE 274

Query: 434 P-NLLRRMILGGARPDAETYSLL 455
              L   MI     PD  TYSLL
Sbjct: 275 AEELYEEMIRRSLDPDIVTYSLL 297


>gi|293332227|ref|NP_001169164.1| uncharacterized protein LOC100383014 [Zea mays]
 gi|223975267|gb|ACN31821.1| unknown [Zea mays]
          Length = 469

 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 82/365 (22%), Positives = 157/365 (43%), Gaps = 22/365 (6%)

Query: 98  YNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMK 157
           YN LV     +G++  +L  +K+M   G   + + +  L+    +  R +    +L +MK
Sbjct: 13  YNTLVHGVCRRGIVDEALRLVKQMERAGIRPNVVTYTMLVDGFCNASRVEEAVCVLERMK 72

Query: 158 ADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYT 217
              V+   +T+  L+         E   ++ S+   S+   + ++Y      H +    +
Sbjct: 73  EKGVSATEATYRSLVHGAFRCLEKERAYRMLSEWIESDPTLHSIAY------HTLLYCLS 126

Query: 218 VAETYVEALE--KSMTGNNW----STLDVLIILYGYLAKGKDL-ERIWATVQELPNVRSK 270
             +   EA+E  K M+   +    +T  ++I     + +  DL E +   +++  N+   
Sbjct: 127 KNDMDKEAVELAKKMSKRGYLLGSTTFSIVIPCAVKVLESSDLCELVDDFIKKGGNLGFD 186

Query: 271 SYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEM 330
            Y++ I++F R   +S+A + + +M S   L + E YN VI  + K G +++A   +K M
Sbjct: 187 MYIMIIKSFLRCKDISKANKYFSQMVSDGLLSSVESYNIVIDCFAKAGEVERALETIKVM 246

Query: 331 SMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEI 390
             +G  PN +T+  L  G  K   V +    L++ M+           P + T  S+I+ 
Sbjct: 247 QESGFSPNLVTFNTLINGYLKLGNVHDAKAFLKMVME-------HGLMPDVITFTSLIDG 299

Query: 391 FAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAK--INDPNLLRRMILGGARPD 448
                 + +A N F E+ +         YN LI     A        LL +M + G  PD
Sbjct: 300 LCHTHQLDDAFNCFSEMSEWGVRPNVQTYNVLIHGLCSAGHVSKAIELLNKMKMDGITPD 359

Query: 449 AETYS 453
           A +++
Sbjct: 360 AYSFN 364



 Score = 49.7 bits (117), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 71/308 (23%), Positives = 130/308 (42%), Gaps = 22/308 (7%)

Query: 100 NLVIACLDK-----GVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNI-- 152
           ++VI C  K      + +L  +++KK   LG       F+  I++  S  R K I     
Sbjct: 154 SIVIPCAVKVLESSDLCELVDDFIKKGGNLG-------FDMYIMIIKSFLRCKDISKANK 206

Query: 153 -LRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHA 211
              QM +D +   V +++I++   A    +E  ++    M+ S   PN V++  L   + 
Sbjct: 207 YFSQMVSDGLLSSVESYNIVIDCFAKAGEVERALETIKVMQESGFSPNLVTFNTLINGYL 266

Query: 212 VARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQEL---PNVR 268
                  A+ +++ + +     +  T   LI    +  +  D    ++ + E    PNV 
Sbjct: 267 KLGNVHDAKAFLKMVMEHGLMPDVITFTSLIDGLCHTHQLDDAFNCFSEMSEWGVRPNV- 325

Query: 269 SKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLK 328
            ++Y + I        VS+A EL  +M+          +N+ I  +C+   I+KA  L  
Sbjct: 326 -QTYNVLIHGLCSAGHVSKAIELLNKMKMDGITPDAYSFNAPILSFCRMRKIEKAQKLFN 384

Query: 329 EMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPW-LETTLSI 387
           +MS  G  P++ TY  L         V+E  K + L M+ I+    +  T W +   L+ 
Sbjct: 385 DMSRYGVSPDSYTYNALIKALCDERRVDEA-KEIILAMESISCIGTKQHTYWPVVGALTK 443

Query: 388 IEIFAEKG 395
           +  F+E G
Sbjct: 444 MGRFSEAG 451



 Score = 43.5 bits (101), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 63/320 (19%), Positives = 128/320 (40%), Gaps = 44/320 (13%)

Query: 156 MKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARL 215
           M AD   P   T++ L+        ++  +++   M+R+ + PN V+Y +L      A  
Sbjct: 1   MPADGCRPDCFTYNTLVHGVCRRGIVDEALRLVKQMERAGIRPNVVTYTMLVDGFCNASR 60

Query: 216 YTVAETYVEAL-EKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSKSYVL 274
              A   +E + EK ++    +   ++   +  L K +    +   ++  P + S +Y  
Sbjct: 61  VEEAVCVLERMKEKGVSATEATYRSLVHGAFRCLEKERAYRMLSEWIESDPTLHSIAYHT 120

Query: 275 AIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCK-----------NGFIDKA 323
            +    +      A EL  +M     L  +  ++ VI    K           + FI K 
Sbjct: 121 LLYCLSKNDMDKEAVELAKKMSKRGYLLGSTTFSIVIPCAVKVLESSDLCELVDDFIKKG 180

Query: 324 SGLLKEM------SMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSS 377
             L  +M      S   CK  +   ++       S +V +G         L+++      
Sbjct: 181 GNLGFDMYIMIIKSFLRCKDISKANKYF------SQMVSDG---------LLSS------ 219

Query: 378 TPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVK-AKINDPNL 436
              +E+   +I+ FA+ G+V  A    + ++++ ++     +NTLI  Y+K   ++D   
Sbjct: 220 ---VESYNIVIDCFAKAGEVERALETIKVMQESGFSPNLVTFNTLINGYLKLGNVHDAKA 276

Query: 437 LRRMIL-GGARPDAETYSLL 455
             +M++  G  PD  T++ L
Sbjct: 277 FLKMVMEHGLMPDVITFTSL 296


>gi|255661158|gb|ACU25748.1| pentatricopeptide repeat-containing protein [Glandularia
           microphylla]
          Length = 426

 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 74/322 (22%), Positives = 149/322 (46%), Gaps = 22/322 (6%)

Query: 98  YNNLVIACLDKGVIKLSLEYMKKM---RVLGHSISYLVFNRLIILNSSPGRRKTIPNILR 154
           Y+ L+     +G+   +L +++KM   RV G  + Y   + LI L+          +I  
Sbjct: 12  YSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLY---SNLIELSRKLCDYSKAISIFS 68

Query: 155 QMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVAR 214
           ++K     P +  ++ ++ +            + S+M+ + V PN  SY  L T +   +
Sbjct: 69  RLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTASYSTLLTMYVENK 128

Query: 215 LYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQEL---PNVRSKS 271
            +  A +    + +     + +T +++I +YG L   K+ ++++  ++++   PNV S +
Sbjct: 129 KFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYN 188

Query: 272 YVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMS 331
            +L +  +G       A  L+  MQ     +    YNS++ +Y K    +KA+ L++EM 
Sbjct: 189 TLLRV--YGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQ 246

Query: 332 MNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTL--SIIE 389
             G +PN+ITY         S ++    K  +L    +  +K+RSS   ++  L  ++I 
Sbjct: 247 NRGIEPNSITY---------STIISIWGKVGKLDRAAMLFQKLRSSGVDIDQVLYQTMIV 297

Query: 390 IFAEKGDVGNAENLFEELKKAN 411
            +   G V +A+ L  ELK+ +
Sbjct: 298 AYERAGLVAHAKRLLHELKRPD 319



 Score = 55.8 bits (133), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 76/370 (20%), Positives = 162/370 (43%), Gaps = 20/370 (5%)

Query: 65  YSYLLEFTIKNHGISQGEKLFCCIPKD-YQNELLYNNLVIACLDKG-VIKLSLEYMKKMR 122
           YS L+E + K    S+   +F  + +  +  +L+  N +I    K  + + +   + +MR
Sbjct: 47  YSNLIELSRKLCDYSKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMR 106

Query: 123 VLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIE 182
             G + +   ++ L+ +     +     ++  +M+  K    ++T +I++ +       +
Sbjct: 107 TAGVTPNTASYSTLLTMYVENKKFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAK 166

Query: 183 GLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLI 242
              K++  M++  +EPN VSY  L   +  A L+  A      +++     N  T + ++
Sbjct: 167 EADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMM 226

Query: 243 ILYGYLAKGKDLERIWATVQELPN----VRSKSYVLAIEAFGRIAQVSRAEELWLEMQSV 298
           ++YG   K  + E+    +QE+ N      S +Y   I  +G++ ++ RA  L+ +++S 
Sbjct: 227 MIYG---KTLEHEKANNLIQEMQNRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSS 283

Query: 299 KQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEG 358
                   Y ++I  Y + G +  A  LL E+      P  I    LA     +  +EE 
Sbjct: 284 GVDIDQVLYQTMIVAYERAGLVAHAKRLLHELKRPDNIPRDIAIHILA----GAGRIEE- 338

Query: 359 FKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFV 418
             A  +  + I   +V+  T +      +I +F++    GN   +F++++   Y   + V
Sbjct: 339 --ATWVFRQAIDAGEVKDITVFER----MIHLFSKYKKYGNVVEVFDKMRGLGYFPDSNV 392

Query: 419 YNTLIKAYVK 428
              ++ AY K
Sbjct: 393 IALVLNAYGK 402



 Score = 41.6 bits (96), Expect = 0.98,   Method: Compositional matrix adjust.
 Identities = 32/125 (25%), Positives = 56/125 (44%), Gaps = 7/125 (5%)

Query: 307 YNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGM 366
           YN++I+V+ K     +A  L+ EM   G  PN  +Y  L        +  E  K LE   
Sbjct: 82  YNAMINVFGKAKLFREARSLISEMRTAGVTPNTASYSTLL------TMYVENKKFLEALS 135

Query: 367 KLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAY 426
                ++++     L T   +I+++ + G    A+ LF  ++K         YNTL++ Y
Sbjct: 136 VFAEMREIKCLLD-LTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVY 194

Query: 427 VKAKI 431
             A++
Sbjct: 195 GDAEL 199



 Score = 40.0 bits (92), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 32/126 (25%), Positives = 58/126 (46%), Gaps = 11/126 (8%)

Query: 307 YNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGM 366
           Y+++I+ + K G  D A   L++M  +    + + Y         SNL+E   K  +   
Sbjct: 12  YSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLY---------SNLIELSRKLCDYSK 62

Query: 367 KLITTKKVRSS--TPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIK 424
            +    +++ S  TP L    ++I +F +      A +L  E++ A  T  T  Y+TL+ 
Sbjct: 63  AISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTASYSTLLT 122

Query: 425 AYVKAK 430
            YV+ K
Sbjct: 123 MYVENK 128


>gi|255661176|gb|ACU25757.1| pentatricopeptide repeat-containing protein [Mulguraea
           asparagoides]
          Length = 426

 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 74/322 (22%), Positives = 149/322 (46%), Gaps = 22/322 (6%)

Query: 98  YNNLVIACLDKGVIKLSLEYMKKM---RVLGHSISYLVFNRLIILNSSPGRRKTIPNILR 154
           Y+ L+     +G+   +L +++KM   RV G  + Y   + LI L+          +I  
Sbjct: 12  YSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLY---SNLIELSRKLCDYSKAISIFS 68

Query: 155 QMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVAR 214
           ++K     P +  ++ ++ +            + S+M+ + V PN  SY  L T +   +
Sbjct: 69  RLKRSGFMPDLVAYNAMINVFGXAKLFREARSLISEMRTAGVMPNTASYSTLLTMYVENK 128

Query: 215 LYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQEL---PNVRSKS 271
            +  A +    + +     + +T +++I +YG L   K+ ++++  ++++   PNV S +
Sbjct: 129 KFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYN 188

Query: 272 YVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMS 331
            +L +  +G       A  L+  MQ     +    YNS++ +Y K    +KA+ L++EM 
Sbjct: 189 TLLRV--YGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQ 246

Query: 332 MNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTL--SIIE 389
             G +PN+ITY         S ++    K  +L    +  +K+RSS   ++  L  ++I 
Sbjct: 247 HRGIEPNSITY---------STIISIWGKVGKLDRAAVLFQKLRSSGVEIDQVLYQTMIV 297

Query: 390 IFAEKGDVGNAENLFEELKKAN 411
            +   G V +A+ L  ELK+ +
Sbjct: 298 AYERAGLVAHAKRLLHELKRPD 319



 Score = 52.0 bits (123), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 80/374 (21%), Positives = 162/374 (43%), Gaps = 28/374 (7%)

Query: 65  YSYLLEFTIKNHGISQGEKLFCCIPKD-YQNELLYNNLVIACLDKGVIKLSLE---YMKK 120
           YS L+E + K    S+   +F  + +  +  +L+  N +I     G  KL  E    + +
Sbjct: 47  YSNLIELSRKLCDYSKAISIFSRLKRSGFMPDLVAYNAMINVF--GXAKLFREARSLISE 104

Query: 121 MRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHN 180
           MR  G   +   ++ L+ +     +     ++  +M+  K    ++T +I++ +      
Sbjct: 105 MRTAGVMPNTASYSTLLTMYVENKKFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQLGM 164

Query: 181 IEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDV 240
            +   K++  M++  +EPN VSY  L   +  A L+  A      +++     N  T + 
Sbjct: 165 AKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNS 224

Query: 241 LIILYGYLAKGKDLERIWATVQEL------PNVRSKSYVLAIEAFGRIAQVSRAEELWLE 294
           ++++YG   K  + E+    +QE+      PN  S +Y   I  +G++ ++ RA  L+ +
Sbjct: 225 MMMIYG---KTLEHEKANNLIQEMQHRGIEPN--SITYSTIISIWGKVGKLDRAAVLFQK 279

Query: 295 MQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNL 354
           ++S         Y ++I  Y + G +  A  LL E+      P  I    LA     +  
Sbjct: 280 LRSSGVEIDQVLYQTMIVAYERAGLVAHAKRLLHELKRPDNIPRDIAIHILA----GAGR 335

Query: 355 VEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTK 414
           +EE   A  +  + I   +V+  T +      +I +F++    GN   +F++++   Y  
Sbjct: 336 IEE---ATWVFRQAIDAGEVKDITVFER----MIHLFSKYKKYGNVVEVFDKMRGLGYFP 388

Query: 415 YTFVYNTLIKAYVK 428
            + V   ++ AY K
Sbjct: 389 DSNVIALVLNAYGK 402



 Score = 39.3 bits (90), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 35/156 (22%), Positives = 67/156 (42%), Gaps = 7/156 (4%)

Query: 276 IEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGC 335
           IE   ++   S+A  ++  ++    +     YN++I+V+       +A  L+ EM   G 
Sbjct: 51  IELSRKLCDYSKAISIFSRLKRSGFMPDLVAYNAMINVFGXAKLFREARSLISEMRTAGV 110

Query: 336 KPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKG 395
            PN  +Y  L        +  E  K LE        ++++     L T   +I+++ + G
Sbjct: 111 MPNTASYSTLL------TMYVENKKFLEALSVFAEMREIKCLLD-LTTCNIMIDVYGQLG 163

Query: 396 DVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKI 431
               A+ LF  ++K         YNTL++ Y  A++
Sbjct: 164 MAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAEL 199


>gi|224142151|ref|XP_002324422.1| predicted protein [Populus trichocarpa]
 gi|222865856|gb|EEF02987.1| predicted protein [Populus trichocarpa]
          Length = 453

 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 79/334 (23%), Positives = 135/334 (40%), Gaps = 41/334 (12%)

Query: 96  LLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQ 155
           + Y  LV A   + + K  L  + K+   G     ++FN +I   S  G  K    + R+
Sbjct: 49  ITYTTLVAALTRQKLFKSILRLISKVEENGMKPDSILFNSIINAFSESGNMKEAMKLFRK 108

Query: 156 MKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARL 215
           MK     P  STF+ L+K   N    E  +K+   ++   V+PN+ +Y IL       R 
Sbjct: 109 MKESGCKPTTSTFNTLIKGYGNAGKTEEALKLLEFLQDGGVKPNQRTYNIL------VRA 162

Query: 216 YTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSKSYVLA 275
           +   E   EA         W+      ++Y  +A G   + +             +Y   
Sbjct: 163 WCNKENMEEA---------WN------MVYKMVASGMQPDAV-------------TYNTL 194

Query: 276 IEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGC 335
             A+    +  RAEE+ LEM + +        + +++ YCK G +  AS  +  M   G 
Sbjct: 195 ARAYAEKGETIRAEEMILEMLNRRVTPNERTCSIIVNGYCKEGNMVDASRFVFRMKELGV 254

Query: 336 KPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKG 395
            PN   +  L  G F   +  EG   +   + L+    VR   P + T  +I+  ++  G
Sbjct: 255 LPNLFVFNSLIKG-FLDTMDTEGVDEV---LTLMEENGVR---PDVVTFSTIMNAWSSAG 307

Query: 396 DVGNAENLFEELKKANYTKYTFVYNTLIKAYVKA 429
            +   + +F ++ KA        ++ L K YV+A
Sbjct: 308 RMDKCKEIFNDMVKAEIEPDIHAFSILAKGYVRA 341



 Score = 68.6 bits (166), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 82/375 (21%), Positives = 164/375 (43%), Gaps = 24/375 (6%)

Query: 94  NELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNIL 153
           + +L+N+++ A  + G +K +++  +KM+  G   +   FN LI    + G+ +    +L
Sbjct: 82  DSILFNSIINAFSESGNMKEAMKLFRKMKESGCKPTTSTFNTLIKGYGNAGKTEEALKLL 141

Query: 154 RQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHA-V 212
             ++   V P+  T++IL++   N  N+E    +   M  S ++P+ V+Y  LA A+A  
Sbjct: 142 EFLQDGGVKPNQRTYNILVRAWCNKENMEEAWNMVYKMVASGMQPDAVTYNTLARAYAEK 201

Query: 213 ARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGK--DLERIWATVQE---LPNV 267
                  E  +E L + +T N  +     II+ GY  +G   D  R    ++E   LPN+
Sbjct: 202 GETIRAEEMILEMLNRRVTPNERT---CSIIVNGYCKEGNMVDASRFVFRMKELGVLPNL 258

Query: 268 RSKSYVLA--IEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASG 325
               +V    I+ F         +E+   M+          ++++++ +   G +DK   
Sbjct: 259 ----FVFNSLIKGFLDTMDTEGVDEVLTLMEENGVRPDVVTFSTIMNAWSSAGRMDKCKE 314

Query: 326 LLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTL 385
           +  +M     +P+   +  LA G  ++   E+          ++T+ +     P +    
Sbjct: 315 IFNDMVKAEIEPDIHAFSILAKGYVRAGEPEK-------AESILTSMRKYGVHPNVVICT 367

Query: 386 SIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAK--INDPNLLRRMILG 443
           ++I  +   G + +A  ++E++ +   +     Y TLI  Y +AK  +    LL+ M   
Sbjct: 368 TVISGWCSAGKMEHAMKVYEKMCEIGVSPNLKTYETLIWGYGEAKQPLKAEELLQVMEEK 427

Query: 444 GARPDAETYSLLKLA 458
           G  P   T  L+  A
Sbjct: 428 GVFPKKGTMQLIADA 442



 Score = 43.9 bits (102), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 36/154 (23%), Positives = 67/154 (43%), Gaps = 9/154 (5%)

Query: 307 YNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGM 366
           Y ++++   +         L+ ++  NG KP++I +  +     +S  ++E        M
Sbjct: 51  YTTLVAALTRQKLFKSILRLISKVEENGMKPDSILFNSIINAFSESGNMKEA-------M 103

Query: 367 KLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAY 426
           KL    K     P   T  ++I+ +   G    A  L E L+          YN L++A+
Sbjct: 104 KLFRKMKESGCKPTTSTFNTLIKGYGNAGKTEEALKLLEFLQDGGVKPNQRTYNILVRAW 163

Query: 427 V-KAKINDP-NLLRRMILGGARPDAETYSLLKLA 458
             K  + +  N++ +M+  G +PDA TY+ L  A
Sbjct: 164 CNKENMEEAWNMVYKMVASGMQPDAVTYNTLARA 197


>gi|148906470|gb|ABR16388.1| unknown [Picea sitchensis]
          Length = 700

 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 85/384 (22%), Positives = 165/384 (42%), Gaps = 41/384 (10%)

Query: 109 GVIKLSLEYMKKMRVLGHSISYL--VFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVS 166
           G  K SLE    M+ +G+    +   +N +++      +     N+  QM  + V+ +  
Sbjct: 265 GRFKESLEAFNLMKEMGYEPGLIDTAYNSVLVSLVKNKKLDMAENLFAQMINNGVSCNNL 324

Query: 167 TFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEAL 226
           T+  +++       +E  MK+  DM ++   P+ V+Y I+ +A    ++   A   ++ +
Sbjct: 325 TYTSMIQCFFLKEKMEDAMKLLDDMIQNNYAPDVVTYTIVISALCKRKMIEQAYGVLQKM 384

Query: 227 EKSMTGNNWSTLDVLIILYGYLAKGKDLERI-WATVQELPNVRSKSYVLAIEAFG--RIA 283
            ++    N  T + LI   G  A  +  E +   T+ E   V    Y   I   G  ++ 
Sbjct: 385 RENGCEPNIYTYNALI--QGLCAVRRPEEALELVTLMEQGGVPPNIYTYTILTHGLCKLR 442

Query: 284 QVSRAEELWLEM--QSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAIT 341
           ++ RA+E++ E   + +K  + T  YN++++ YC+   + +A  +LKEM  N C P+ +T
Sbjct: 443 RLDRAKEMFNEALARGLKPNRVT--YNTLLNGYCRGSRLIEAMDILKEMHQNDCTPDHVT 500

Query: 342 YRHLALGCFKSNLVEEGFKA------------------LELGMKLITTKKV------RSS 377
           Y  L  G  + N + +  +                   L  G+  +   K       R  
Sbjct: 501 YTTLIQGLVQGNQLPDALRMHDEMENKGYDVNFDTLNILARGLARVGNHKDASIFYRRMK 560

Query: 378 TPWLETTLS----IIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVK-AKIN 432
                 + S     I   +  G++  A+ L  E+    Y+     YNT+IK + +  +++
Sbjct: 561 DRGFAYSASDYYLAIHCLSTAGEMEEAQALLYEMINKGYSPNLTTYNTMIKGFCRQGRLD 620

Query: 433 DPN-LLRRMILGGARPDAETYSLL 455
           D + +L  MI  G  PD  +Y++L
Sbjct: 621 DADAMLNFMIENGIGPDTGSYNIL 644



 Score = 48.9 bits (115), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 50/204 (24%), Positives = 89/204 (43%), Gaps = 10/204 (4%)

Query: 254 LERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISV 313
           L+++    +E+      S+V++    GR  +   A  L  EM     L  T  YNSV+  
Sbjct: 239 LQKMQTQGREITRSMLHSFVMSYGRSGRFKESLEAFNLMKEMGYEPGLIDTA-YNSVLVS 297

Query: 314 YCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKK 373
             KN  +D A  L  +M  NG   N +TY  + + CF    ++E    +E  MKL+    
Sbjct: 298 LVKNKKLDMAENLFAQMINNGVSCNNLTYTSM-IQCF---FLKE---KMEDAMKLLDDMI 350

Query: 374 VRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKIND 433
             +  P + T   +I    ++  +  A  + +++++       + YN LI+     +  +
Sbjct: 351 QNNYAPDVVTYTIVISALCKRKMIEQAYGVLQKMRENGCEPNIYTYNALIQGLCAVRRPE 410

Query: 434 P--NLLRRMILGGARPDAETYSLL 455
               L+  M  GG  P+  TY++L
Sbjct: 411 EALELVTLMEQGGVPPNIYTYTIL 434



 Score = 45.4 bits (106), Expect = 0.053,   Method: Compositional matrix adjust.
 Identities = 85/400 (21%), Positives = 170/400 (42%), Gaps = 35/400 (8%)

Query: 43  KRALEVMEWVIRERPYRPKELDYSY--LLEFTIKNHGISQGEKLFCCIPKD--YQNELLY 98
           K +LE    +++E  Y P  +D +Y  +L   +KN  +   E LF  +  +    N L Y
Sbjct: 268 KESLEAFN-LMKEMGYEPGLIDTAYNSVLVSLVKNKKLDMAENLFAQMINNGVSCNNLTY 326

Query: 99  NNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIP---NILRQ 155
            +++     K  ++ +++ +  M    ++   + +  +I   S+  +RK I     +L++
Sbjct: 327 TSMIQCFFLKEKMEDAMKLLDDMIQNNYAPDVVTYTIVI---SALCKRKMIEQAYGVLQK 383

Query: 156 MKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVA-- 213
           M+ +   P++ T++ L++        E  +++ + M++  V PN  +Y IL   H +   
Sbjct: 384 MRENGCEPNIYTYNALIQGLCAVRRPEEALELVTLMEQGGVPPNIYTYTILT--HGLCKL 441

Query: 214 -RLYTVAETYVEALEKSMTGN--NWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSK 270
            RL    E + EAL + +  N   ++TL     L GY  +G  L      ++E+      
Sbjct: 442 RRLDRAKEMFNEALARGLKPNRVTYNTL-----LNGY-CRGSRLIEAMDILKEMHQNDCT 495

Query: 271 ----SYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGL 326
               +Y   I+   +  Q+  A  +  EM++       +  N +     + G    AS  
Sbjct: 496 PDHVTYTTLIQGLVQGNQLPDALRMHDEMENKGYDVNFDTLNILARGLARVGNHKDASIF 555

Query: 327 LKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLS 386
            + M   G   +A  Y +LA+ C  +         +E    L+     +  +P L T  +
Sbjct: 556 YRRMKDRGFAYSASDY-YLAIHCLST------AGEMEEAQALLYEMINKGYSPNLTTYNT 608

Query: 387 IIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAY 426
           +I+ F  +G + +A+ +   + +      T  YN LIK +
Sbjct: 609 MIKGFCRQGRLDDADAMLNFMIENGIGPDTGSYNILIKEF 648


>gi|297844992|ref|XP_002890377.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297336219|gb|EFH66636.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 537

 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 72/313 (23%), Positives = 138/313 (44%), Gaps = 31/313 (9%)

Query: 156 MKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARL 215
           MK+  V   + TF IL++           +  ++ M+     P+++++ I+ +  +  R 
Sbjct: 177 MKSRNVEISIETFTILIRRYVRAGLASEAVHCFNRMEDYGCVPDQIAFSIVISNLSRKRR 236

Query: 216 YTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKG-------KDLERIWATVQEL---P 265
            + A+++ ++L+     +        +I+Y  L +G        + E+++  ++     P
Sbjct: 237 ASEAQSFFDSLKDRFEPD--------VIVYTNLVRGWCRAGEISEAEKVFKDMKLAGIEP 288

Query: 266 NVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASG 325
           NV +  Y + I+A  R  Q+SRA +++ +M           +N+++ V+ K G  +K   
Sbjct: 289 NVYT--YSIVIDALCRCGQISRAHDVFADMLDSGCAPNAITFNNLMRVHVKAGRPEKVLQ 346

Query: 326 LLKEMSMNGCKPNAITYRHL-ALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETT 384
           +  +M   GC+P+ ITY  L    C   NL E   K L   +K    KK   +     T 
Sbjct: 347 VYNQMKKLGCEPDTITYNFLIETHCRDENL-ENAVKVLNTMIK----KKCEVNASTFNTI 401

Query: 385 LSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKINDP--NLLRRMIL 442
              IE   +K DV  A  ++ ++ +A     T  YN L++ +  +K  D    + + M  
Sbjct: 402 FRYIE---KKRDVNGAHRMYSKMMEAKCEPNTVTYNILMRMFAGSKSTDMVLKMKKDMDD 458

Query: 443 GGARPDAETYSLL 455
               P+  TY LL
Sbjct: 459 KEVEPNVNTYRLL 471



 Score = 60.8 bits (146), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 56/294 (19%), Positives = 123/294 (41%), Gaps = 8/294 (2%)

Query: 60  PKELDYSYLLEFTIKNHGISQGEKLFCCIPKDYQNELL-YNNLVIACLDKGVIKLSLEYM 118
           P ++ +S ++    +    S+ +  F  +   ++ +++ Y NLV      G I  + +  
Sbjct: 219 PDQIAFSIVISNLSRKRRASEAQSFFDSLKDRFEPDVIVYTNLVRGWCRAGEISEAEKVF 278

Query: 119 KKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEAND 178
           K M++ G   +   ++ +I      G+     ++   M     AP+  TF+ LM++    
Sbjct: 279 KDMKLAGIEPNVYTYSIVIDALCRCGQISRAHDVFADMLDSGCAPNAITFNNLMRVHVKA 338

Query: 179 HNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTL 238
              E +++VY+ MK+   EP+ ++Y  L   H        A   +  + K     N ST 
Sbjct: 339 GRPEKVLQVYNQMKKLGCEPDTITYNFLIETHCRDENLENAVKVLNTMIKKKCEVNASTF 398

Query: 239 DVLIILYGYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSV 298
           +    ++ Y+ K +D+        ++   + +   +      R+   S++ ++ L+M+  
Sbjct: 399 NT---IFRYIEKKRDVNGAHRMYSKMMEAKCEPNTVTYNILMRMFAGSKSTDMVLKMKKD 455

Query: 299 KQLKATE----QYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALG 348
              K  E     Y  +++++C  G  + A  L KEM    C   +++   + L 
Sbjct: 456 MDDKEVEPNVNTYRLLVTMFCGMGHWNNAYKLFKEMVEEKCLTPSLSLYEMVLA 509



 Score = 50.1 bits (118), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 52/246 (21%), Positives = 104/246 (42%), Gaps = 16/246 (6%)

Query: 60  PKELDYSYLLEFTIKNHGISQGEKLFC------CIPKDYQNELLYNNLVIACLDKGVIKL 113
           P    YS +++   +   IS+   +F       C P    N + +NNL+   +  G  + 
Sbjct: 288 PNVYTYSIVIDALCRCGQISRAHDVFADMLDSGCAP----NAITFNNLMRVHVKAGRPEK 343

Query: 114 SLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMK 173
            L+   +M+ LG     + +N LI  +      +    +L  M   K   + STF+ + +
Sbjct: 344 VLQVYNQMKKLGCEPDTITYNFLIETHCRDENLENAVKVLNTMIKKKCEVNASTFNTIFR 403

Query: 174 IEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGN 233
                 ++ G  ++YS M  ++ EPN V+Y IL    A ++   +     + ++      
Sbjct: 404 YIEKKRDVNGAHRMYSKMMEAKCEPNTVTYNILMRMFAGSKSTDMVLKMKKDMDDKEVEP 463

Query: 234 NWSTLDVLIILYGYLAKGKDLERIWATVQE----LPNVRSKSYVLAIEAFGRIAQVSRAE 289
           N +T  +L+ ++  +    +  +++  + E     P++     VLA     R  Q+ + E
Sbjct: 464 NVNTYRLLVTMFCGMGHWNNAYKLFKEMVEEKCLTPSLSLYEMVLA--QLRRAGQLKKHE 521

Query: 290 ELWLEM 295
           EL  +M
Sbjct: 522 ELVEKM 527


>gi|357521009|ref|XP_003630793.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355524815|gb|AET05269.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 584

 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 78/361 (21%), Positives = 148/361 (40%), Gaps = 25/361 (6%)

Query: 84  LFCCIPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSP 143
           L C      Q  +    L+   + KG    ++     +   GH  + + +  L+   +  
Sbjct: 32  LICMGSNSCQTVISRTKLMSTLIRKGKPHEAVTIFNSLTEEGHKPTIITYTTLVAALTRL 91

Query: 144 GRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSY 203
            R  +IP++L +++ + V P    F+ ++   ++   +   MK++  MK    +P   ++
Sbjct: 92  KRFNSIPSLLSKVEENGVKPDSILFNAMINAFSDSGKVHEAMKIFRKMKECGCKPTTSTF 151

Query: 204 CILATAHA-VARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQ 262
             L      V R +   +     ++      N  T ++LI  +       +LE  W  + 
Sbjct: 152 NTLIKGFGIVGRPHEAMKLLEMMIQDGNVKPNERTYNILIQAW---CTKNELEEAWNVMH 208

Query: 263 ELPNVRSK----SYVLAIEAFGRIAQVSRAEELWLEMQSV-KQLKATEQYNS-VISVYCK 316
           ++ N   +    +Y     AF +  +   AE L L+MQ    ++K  E+    +I  YCK
Sbjct: 209 KMVNSGMQPDIVTYNTLARAFAQNGETDNAERLILKMQQYNNKVKPNERTCGIIIRGYCK 268

Query: 317 NGFIDKASGLLKEMSMNGCKPNAITYRHLALGCF---KSNLVEEGFKAL-ELGMKLITTK 372
            G + +A   L +M   G  PN + +  L  G      ++ VEE    + E G+K     
Sbjct: 269 EGNMTEALRFLYKMKELGVHPNPVVFNSLIKGYLDITDTDGVEEALTLMEEFGIK----- 323

Query: 373 KVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKIN 432
                 P + T  +I+  ++  G + N E +F+++ KA        Y+ L K YV+A   
Sbjct: 324 ------PDVVTYSTIMNAWSSSGLMDNCEEIFDDMVKAEIEPDIQAYSILAKGYVRAGQP 377

Query: 433 D 433
           D
Sbjct: 378 D 378



 Score = 59.7 bits (143), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 84/373 (22%), Positives = 153/373 (41%), Gaps = 19/373 (5%)

Query: 94  NELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNIL 153
           + +L+N ++ A  D G +  +++  +KM+  G   +   FN LI      GR      +L
Sbjct: 112 DSILFNAMINAFSDSGKVHEAMKIFRKMKECGCKPTTSTFNTLIKGFGIVGRPHEAMKLL 171

Query: 154 RQMKAD-KVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAV 212
             M  D  V P+  T++IL++     + +E    V   M  S ++P+ V+Y  LA A A 
Sbjct: 172 EMMIQDGNVKPNERTYNILIQAWCTKNELEEAWNVMHKMVNSGMQPDIVTYNTLARAFAQ 231

Query: 213 ARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLE--RIWATVQELPNVRSK 270
                 AE  +  +++       +     II+ GY  +G   E  R    ++EL  V   
Sbjct: 232 NGETDNAERLILKMQQYNNKVKPNERTCGIIIRGYCKEGNMTEALRFLYKMKEL-GVHPN 290

Query: 271 SYVLA--IEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLK 328
             V    I+ +  I      EE    M+          Y+++++ +  +G +D    +  
Sbjct: 291 PVVFNSLIKGYLDITDTDGVEEALTLMEEFGIKPDVVTYSTIMNAWSSSGLMDNCEEIFD 350

Query: 329 EMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSII 388
           +M     +P+   Y  LA G  ++   ++     E  +  +T   ++++     T   II
Sbjct: 351 DMVKAEIEPDIQAYSILAKGYVRAGQPDKA----EALLNSMTKYGLQANVVIFTT---II 403

Query: 389 EIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKINDP----NLLRRMILGG 444
             +   G +  A  L+E++ +         Y TLI  Y +AK   P     LL  M   G
Sbjct: 404 SGWCAAGKMDCALRLYEKMNEMGTPLNLKTYETLIWGYGEAK--QPWKAEELLVTMEESG 461

Query: 445 ARPDAETYSLLKL 457
             P+  T  L+++
Sbjct: 462 VAPEMSTIELVQM 474



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 63/248 (25%), Positives = 112/248 (45%), Gaps = 15/248 (6%)

Query: 59  RPKELDYSYLLEFTIKNHGISQGEKLFCCIPKDYQNELLYNNLVIACLDKGVIKL----- 113
           +P  + Y+ L     +N      E+L   + + Y N++  N      + +G  K      
Sbjct: 216 QPDIVTYNTLARAFAQNGETDNAERLILKM-QQYNNKVKPNERTCGIIIRGYCKEGNMTE 274

Query: 114 SLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMK 173
           +L ++ KM+ LG   + +VFN LI           +   L  M+   + P V T+  +M 
Sbjct: 275 ALRFLYKMKELGVHPNPVVFNSLIKGYLDITDTDGVEEALTLMEEFGIKPDVVTYSTIMN 334

Query: 174 IEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMT-- 231
             ++   ++   +++ DM ++E+EP+  +Y ILA  +  A     A    EAL  SMT  
Sbjct: 335 AWSSSGLMDNCEEIFDDMVKAEIEPDIQAYSILAKGYVRAGQPDKA----EALLNSMTKY 390

Query: 232 GNNWSTLDVLIILYGYLAKGK-DLE-RIWATVQELPN-VRSKSYVLAIEAFGRIAQVSRA 288
           G   + +    I+ G+ A GK D   R++  + E+   +  K+Y   I  +G   Q  +A
Sbjct: 391 GLQANVVIFTTIISGWCAAGKMDCALRLYEKMNEMGTPLNLKTYETLIWGYGEAKQPWKA 450

Query: 289 EELWLEMQ 296
           EEL + M+
Sbjct: 451 EELLVTME 458



 Score = 38.9 bits (89), Expect = 6.4,   Method: Compositional matrix adjust.
 Identities = 38/155 (24%), Positives = 67/155 (43%), Gaps = 10/155 (6%)

Query: 307 YNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGM 366
           Y ++++   +    +    LL ++  NG KP++I +  +      S  V E        M
Sbjct: 81  YTTLVAALTRLKRFNSIPSLLSKVEENGVKPDSILFNAMINAFSDSGKVHEA-------M 133

Query: 367 KLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEEL-KKANYTKYTFVYNTLIKA 425
           K+    K     P   T  ++I+ F   G    A  L E + +  N       YN LI+A
Sbjct: 134 KIFRKMKECGCKPTTSTFNTLIKGFGIVGRPHEAMKLLEMMIQDGNVKPNERTYNILIQA 193

Query: 426 Y-VKAKINDP-NLLRRMILGGARPDAETYSLLKLA 458
           +  K ++ +  N++ +M+  G +PD  TY+ L  A
Sbjct: 194 WCTKNELEEAWNVMHKMVNSGMQPDIVTYNTLARA 228


>gi|255661216|gb|ACU25777.1| pentatricopeptide repeat-containing protein [Petrea racemosa]
          Length = 426

 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 74/322 (22%), Positives = 152/322 (47%), Gaps = 22/322 (6%)

Query: 98  YNNLVIACLDKGVIKLSLEYMKKM---RVLGHSISYLVFNRLIILNSSPGRRKTIPNILR 154
           Y+ L+     +G+   +L +++KM   RV G  + Y   + LI L+          +I  
Sbjct: 12  YSTLITHFGKEGLFDDALSWLQKMEQDRVPGDLVLY---SNLIELSRKLCDYSKAISIFS 68

Query: 155 QMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVAR 214
           ++K   + P +  ++ ++ +       +    + S+M+ + V P+ VSY  + T +    
Sbjct: 69  RLKRSGITPDLVAYNSMINVFGKAKLFKEARSLISEMRVAGVMPDTVSYSTILTMYVENH 128

Query: 215 LYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQEL---PNVRSKS 271
            +  A +    + +     + +T +++I +YG L   K+ +R++ +++++   PNV S +
Sbjct: 129 KFLEALSVFREMREINCLLDLTTCNIMIDVYGQLDMAKEADRLFWSMRKMGIEPNVVSYN 188

Query: 272 YVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMS 331
            +L +  +G       A  L+  MQ     +    YN+++ +Y K    +KA+ L++EM 
Sbjct: 189 TLLRV--YGDAELFGEAIHLFRLMQRKNIEQNVVTYNTMMMIYGKTLEHEKANNLIQEMQ 246

Query: 332 MNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTL--SIIE 389
             G +PNAITY         S ++    K  +L    +  +K+RSS   ++  L  ++I 
Sbjct: 247 NRGIEPNAITY---------STIISIWGKVGKLDRAAMLFQKLRSSGVEIDQVLYQTMIV 297

Query: 390 IFAEKGDVGNAENLFEELKKAN 411
            +   G V +A+ L  ELK+ +
Sbjct: 298 AYERAGLVAHAKRLLHELKRPD 319



 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 75/375 (20%), Positives = 168/375 (44%), Gaps = 30/375 (8%)

Query: 65  YSYLLEFTIKNHGISQGEKLFCCIPKD--YQNELLYNNLVIACLDKGVIKLSLEYMKKMR 122
           YS L+E + K    S+   +F  + +     + + YN+++       + K +   + +MR
Sbjct: 47  YSNLIELSRKLCDYSKAISIFSRLKRSGITPDLVAYNSMINVFGKAKLFKEARSLISEMR 106

Query: 123 VLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIE 182
           V G     + ++ ++ +     +     ++ R+M+       ++T +I++ +       +
Sbjct: 107 VAGVMPDTVSYSTILTMYVENHKFLEALSVFREMREINCLLDLTTCNIMIDVYGQLDMAK 166

Query: 183 GLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLI 242
              +++  M++  +EPN VSY  L   +  A L+  A      +++     N  T + ++
Sbjct: 167 EADRLFWSMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNTMM 226

Query: 243 ILYGYLAKGKDLERIWATVQEL------PNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQ 296
           ++YG   K  + E+    +QE+      PN  + S +++I  +G++ ++ RA  L+ +++
Sbjct: 227 MIYG---KTLEHEKANNLIQEMQNRGIEPNAITYSTIISI--WGKVGKLDRAAMLFQKLR 281

Query: 297 SVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAI---TYRHLALGCFKSN 353
           S         Y ++I  Y + G +  A  LL E+     +P+ I   T  H+  G  +  
Sbjct: 282 SSGVEIDQVLYQTMIVAYERAGLVAHAKRLLHELK----RPDNIPRDTAIHILAGAGR-- 335

Query: 354 LVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYT 413
            +EE   A  +  + I   +V+  T +      +I++F++     N   +FE+++   Y 
Sbjct: 336 -IEE---ATWVFRQAIDAGEVKDITVFER----MIDLFSKYRKYTNVGEVFEKMRGLGYF 387

Query: 414 KYTFVYNTLIKAYVK 428
             + V   ++ AY K
Sbjct: 388 PDSNVIALVLNAYGK 402



 Score = 45.1 bits (105), Expect = 0.085,   Method: Compositional matrix adjust.
 Identities = 39/179 (21%), Positives = 80/179 (44%), Gaps = 30/179 (16%)

Query: 307 YNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHL------------ALGCFKS-- 352
           YNS+I+V+ K     +A  L+ EM + G  P+ ++Y  +            AL  F+   
Sbjct: 82  YNSMINVFGKAKLFKEARSLISEMRVAGVMPDTVSYSTILTMYVENHKFLEALSVFREMR 141

Query: 353 -----------NLVEEGFKALELGM---KLITTKKVRSSTPWLETTLSIIEIFAEKGDVG 398
                      N++ + +  L++     +L  + +     P + +  +++ ++ +    G
Sbjct: 142 EINCLLDLTTCNIMIDVYGQLDMAKEADRLFWSMRKMGIEPNVVSYNTLLRVYGDAELFG 201

Query: 399 NAENLFEELKKANYTKYTFVYNTLIKAYVKAKINDP--NLLRRMILGGARPDAETYSLL 455
            A +LF  +++ N  +    YNT++  Y K   ++   NL++ M   G  P+A TYS +
Sbjct: 202 EAIHLFRLMQRKNIEQNVVTYNTMMMIYGKTLEHEKANNLIQEMQNRGIEPNAITYSTI 260



 Score = 38.1 bits (87), Expect = 9.3,   Method: Compositional matrix adjust.
 Identities = 45/245 (18%), Positives = 103/245 (42%), Gaps = 9/245 (3%)

Query: 94  NELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNIL 153
           N + YN L+    D  +   ++   + M+      + + +N ++++       +   N++
Sbjct: 183 NVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNTMMMIYGKTLEHEKANNLI 242

Query: 154 RQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVA 213
           ++M+   + P+  T+  ++ I      ++    ++  ++ S VE ++V Y  +  A+  A
Sbjct: 243 QEMQNRGIEPNAITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQVLYQTMIVAYERA 302

Query: 214 RLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSKSYV 273
            L   A+  +  L++    +N      + IL G    G+  E  W   Q +     K   
Sbjct: 303 GLVAHAKRLLHELKRP---DNIPRDTAIHILAG---AGRIEEATWVFRQAIDAGEVKDIT 356

Query: 274 L---AIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEM 330
           +    I+ F +  + +   E++ +M+ +     +     V++ Y K    DKA+ +  EM
Sbjct: 357 VFERMIDLFSKYRKYTNVGEVFEKMRGLGYFPDSNVIALVLNAYGKLHEFDKANEVYMEM 416

Query: 331 SMNGC 335
              GC
Sbjct: 417 QDEGC 421


>gi|255661162|gb|ACU25750.1| pentatricopeptide repeat-containing protein [Glandularia flava]
          Length = 426

 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 74/322 (22%), Positives = 149/322 (46%), Gaps = 22/322 (6%)

Query: 98  YNNLVIACLDKGVIKLSLEYMKKM---RVLGHSISYLVFNRLIILNSSPGRRKTIPNILR 154
           Y+ L+     +G+   +L +++KM   RV G  + Y   + LI L+          +I  
Sbjct: 12  YSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLY---SNLIELSRKLCDYSKAISIFS 68

Query: 155 QMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVAR 214
           ++K     P +  ++ ++ +            + S+M+ + V PN  SY  L T +   +
Sbjct: 69  RLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTASYSTLLTMYVENK 128

Query: 215 LYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQEL---PNVRSKS 271
            +  A +    + +     + +T +++I +YG L   K+ ++++  ++++   PNV S +
Sbjct: 129 KFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYN 188

Query: 272 YVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMS 331
            +L +  +G       A  L+  MQ     +    YNS++ +Y K    +KA+ L++EM 
Sbjct: 189 TLLRV--YGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQ 246

Query: 332 MNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTL--SIIE 389
             G +PN+ITY         S ++    K  +L    +  +K+RSS   ++  L  ++I 
Sbjct: 247 NRGIEPNSITY---------STIISIWGKVGKLDRAAMLFQKLRSSGVDIDQVLYQTMIV 297

Query: 390 IFAEKGDVGNAENLFEELKKAN 411
            +   G V +A+ L  ELK+ +
Sbjct: 298 AYERAGLVAHAKRLLHELKRPD 319



 Score = 55.1 bits (131), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 74/370 (20%), Positives = 160/370 (43%), Gaps = 20/370 (5%)

Query: 65  YSYLLEFTIKNHGISQGEKLFCCIPKD-YQNELLYNNLVIACLDKG-VIKLSLEYMKKMR 122
           YS L+E + K    S+   +F  + +  +  +L+  N +I    K  + + +   + +MR
Sbjct: 47  YSNLIELSRKLCDYSKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMR 106

Query: 123 VLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIE 182
             G + +   ++ L+ +     +     ++  +M+  K    ++T +I++ +       +
Sbjct: 107 TAGVTPNTASYSTLLTMYVENKKFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAK 166

Query: 183 GLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLI 242
              K++  M++  +EPN VSY  L   +  A L+  A      +++     N  T + ++
Sbjct: 167 EADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMM 226

Query: 243 ILYGYLAKGKDLERIWATVQELPN----VRSKSYVLAIEAFGRIAQVSRAEELWLEMQSV 298
           ++YG   K  + E+    +QE+ N      S +Y   I  +G++ ++ RA  L+ +++S 
Sbjct: 227 MIYG---KTLEHEKANNLIQEMQNRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSS 283

Query: 299 KQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEG 358
                   Y ++I  Y + G +  A  LL E+      P  I   H+  G  +       
Sbjct: 284 GVDIDQVLYQTMIVAYERAGLVAHAKRLLHELKRPDNIPRDIAI-HILAGAGRXEEATWV 342

Query: 359 FKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFV 418
           F+      + I   +V+  T +      +I +F++    GN   +F++++   Y   + V
Sbjct: 343 FR------QAIDAGEVKDITVFER----MIHLFSKYKKYGNVVEVFDKMRGLGYFPDSNV 392

Query: 419 YNTLIKAYVK 428
              ++ AY K
Sbjct: 393 IALVLNAYGK 402



 Score = 41.2 bits (95), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 32/125 (25%), Positives = 56/125 (44%), Gaps = 7/125 (5%)

Query: 307 YNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGM 366
           YN++I+V+ K     +A  L+ EM   G  PN  +Y  L        +  E  K LE   
Sbjct: 82  YNAMINVFGKAKLFREARSLISEMRTAGVTPNTASYSTLL------TMYVENKKFLEALS 135

Query: 367 KLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAY 426
                ++++     L T   +I+++ + G    A+ LF  ++K         YNTL++ Y
Sbjct: 136 VFAEMREIKCLLD-LTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVY 194

Query: 427 VKAKI 431
             A++
Sbjct: 195 GDAEL 199



 Score = 40.0 bits (92), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 32/126 (25%), Positives = 58/126 (46%), Gaps = 11/126 (8%)

Query: 307 YNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGM 366
           Y+++I+ + K G  D A   L++M  +    + + Y         SNL+E   K  +   
Sbjct: 12  YSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLY---------SNLIELSRKLCDYSK 62

Query: 367 KLITTKKVRSS--TPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIK 424
            +    +++ S  TP L    ++I +F +      A +L  E++ A  T  T  Y+TL+ 
Sbjct: 63  AISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTASYSTLLT 122

Query: 425 AYVKAK 430
            YV+ K
Sbjct: 123 MYVENK 128


>gi|410110099|gb|AFV61129.1| pentatricopeptide repeat-containing protein 123, partial [Lantana
           trifolia]
          Length = 440

 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 74/322 (22%), Positives = 148/322 (45%), Gaps = 22/322 (6%)

Query: 98  YNNLVIACLDKGVIKLSLEYMKKM---RVLGHSISYLVFNRLIILNSSPGRRKTIPNILR 154
           Y+ L+     +G+   +L +++KM   RV G  + Y   + LI L+          +I  
Sbjct: 18  YSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLY---SNLIELSRKXCDYSKAISIFS 74

Query: 155 QMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVAR 214
           ++K     P +  ++ ++ +            +  +MK + V PN  SY  L T +   +
Sbjct: 75  RLKRSGFTPDLVAYNAMINVFGKAKLFREARSLIGEMKXAGVMPNTASYSTLLTMYVENK 134

Query: 215 LYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQEL---PNVRSKS 271
            +  A +    + +     + +T +++I +YG L   K+ ++++  ++++   PNV S +
Sbjct: 135 KFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYN 194

Query: 272 YVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMS 331
            +L +  +G       A  L+  MQ     +    YNS++ +Y K    +KA+ L++EM 
Sbjct: 195 TLLRV--YGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQ 252

Query: 332 MNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTL--SIIE 389
             G +PN+ITY         S ++    K  +L    +  +K+RSS   ++  L  ++I 
Sbjct: 253 SRGIEPNSITY---------STIISIWGKVGKLDRAAMLFQKLRSSGXEIDQILFQTMIV 303

Query: 390 IFAEKGDVGNAENLFEELKKAN 411
            +   G V +A+ L  ELK+ +
Sbjct: 304 AYERAGLVAHAKRLLHELKRPD 325



 Score = 45.1 bits (105), Expect = 0.080,   Method: Compositional matrix adjust.
 Identities = 53/247 (21%), Positives = 99/247 (40%), Gaps = 45/247 (18%)

Query: 187 VYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYG 246
           ++ +M++  + P+  +Y  L T      L+  A ++++ +E+     +       ++LY 
Sbjct: 2   LFDEMRQRALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGD-------LVLYS 54

Query: 247 YLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQ 306
            L    +L R           +   Y  AI  F R+ +     +L               
Sbjct: 55  NLI---ELSR-----------KXCDYSKAISIFSRLKRSGFTPDLV-------------A 87

Query: 307 YNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGM 366
           YN++I+V+ K     +A  L+ EM   G  PN  +Y  L        +  E  K LE   
Sbjct: 88  YNAMINVFGKAKLFREARSLIGEMKXAGVMPNTASYSTLL------TMYVENKKFLE--- 138

Query: 367 KLITTKKVRSSTPWLETTLS--IIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIK 424
            L    ++R     L+ T    +I+++ + G    A+ LF  ++K         YNTL++
Sbjct: 139 ALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTLLR 198

Query: 425 AYVKAKI 431
            Y  A++
Sbjct: 199 VYGDAEL 205



 Score = 40.8 bits (94), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 35/134 (26%), Positives = 55/134 (41%), Gaps = 11/134 (8%)

Query: 325 GLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPW-LET 383
           GL  EM      P+  TY  L     K  L +     L+        K  +   P  L  
Sbjct: 1   GLFDEMRQRALSPDRYTYSTLITHFGKEGLFDAALSWLQ--------KMEQDRVPGDLVL 52

Query: 384 TLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKI--NDPNLLRRMI 441
             ++IE+  +  D   A ++F  LK++ +T     YN +I  + KAK+     +L+  M 
Sbjct: 53  YSNLIELSRKXCDYSKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLIGEMK 112

Query: 442 LGGARPDAETYSLL 455
             G  P+  +YS L
Sbjct: 113 XAGVMPNTASYSTL 126


>gi|255661164|gb|ACU25751.1| pentatricopeptide repeat-containing protein [Glandularia subincana]
          Length = 426

 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 74/322 (22%), Positives = 149/322 (46%), Gaps = 22/322 (6%)

Query: 98  YNNLVIACLDKGVIKLSLEYMKKM---RVLGHSISYLVFNRLIILNSSPGRRKTIPNILR 154
           Y+ L+     +G+   +L +++KM   RV G  + Y   + LI L+          +I  
Sbjct: 12  YSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLY---SNLIELSRKLCDYSKAISIFS 68

Query: 155 QMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVAR 214
           ++K     P +  ++ ++ +            + S+M+ + V PN  SY  L T +   +
Sbjct: 69  RLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTASYSTLLTMYVENK 128

Query: 215 LYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQEL---PNVRSKS 271
            +  A +    + +     + +T +++I +YG L   K+ ++++  ++++   PNV S +
Sbjct: 129 KFLEALSXFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYN 188

Query: 272 YVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMS 331
            +L +  +G       A  L+  MQ     +    YNS++ +Y K    +KA+ L++EM 
Sbjct: 189 TLLRV--YGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQ 246

Query: 332 MNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTL--SIIE 389
             G +PN+ITY         S ++    K  +L    +  +K+RSS   ++  L  ++I 
Sbjct: 247 NRGIEPNSITY---------STIISIWGKVGKLDRAAMLFQKLRSSGVDIDQVLYQTMIV 297

Query: 390 IFAEKGDVGNAENLFEELKKAN 411
            +   G V +A+ L  ELK+ +
Sbjct: 298 AYERAGLVAHAKRLLHELKRPD 319



 Score = 53.9 bits (128), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 76/370 (20%), Positives = 161/370 (43%), Gaps = 20/370 (5%)

Query: 65  YSYLLEFTIKNHGISQGEKLFCCIPKD-YQNELLYNNLVIACLDKG-VIKLSLEYMKKMR 122
           YS L+E + K    S+   +F  + +  +  +L+  N +I    K  + + +   + +MR
Sbjct: 47  YSNLIELSRKLCDYSKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMR 106

Query: 123 VLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIE 182
             G + +   ++ L+ +     +     +   +M+  K    ++T +I++ +       +
Sbjct: 107 TAGVTPNTASYSTLLTMYVENKKFLEALSXFAEMREIKCLLDLTTCNIMIDVYGQLGMAK 166

Query: 183 GLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLI 242
              K++  M++  +EPN VSY  L   +  A L+  A      +++     N  T + ++
Sbjct: 167 EADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMM 226

Query: 243 ILYGYLAKGKDLERIWATVQELPN----VRSKSYVLAIEAFGRIAQVSRAEELWLEMQSV 298
           ++YG   K  + E+    +QE+ N      S +Y   I  +G++ ++ RA  L+ +++S 
Sbjct: 227 MIYG---KTLEHEKANNLIQEMQNRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSS 283

Query: 299 KQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEG 358
                   Y ++I  Y + G +  A  LL E+      P  I    LA     +  +EE 
Sbjct: 284 GVDIDQVLYQTMIVAYERAGLVAHAKRLLHELKRPDNIPRDIAIHILA----GAGRIEE- 338

Query: 359 FKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFV 418
             A  +  + I   +V+  T +      +I +F++    GN   +F++++   Y   + V
Sbjct: 339 --ATWVFRQAIDAGEVKDITVFER----MIHLFSKYKKYGNVVEVFDKMRGLGYFPDSNV 392

Query: 419 YNTLIKAYVK 428
              ++ AY K
Sbjct: 393 IALVLNAYGK 402



 Score = 42.0 bits (97), Expect = 0.64,   Method: Compositional matrix adjust.
 Identities = 32/125 (25%), Positives = 56/125 (44%), Gaps = 7/125 (5%)

Query: 307 YNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGM 366
           YN++I+V+ K     +A  L+ EM   G  PN  +Y  L        +  E  K LE   
Sbjct: 82  YNAMINVFGKAKLFREARSLISEMRTAGVTPNTASYSTLL------TMYVENKKFLEALS 135

Query: 367 KLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAY 426
                ++++     L T   +I+++ + G    A+ LF  ++K         YNTL++ Y
Sbjct: 136 XFAEMREIKCLLD-LTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVY 194

Query: 427 VKAKI 431
             A++
Sbjct: 195 GDAEL 199



 Score = 40.0 bits (92), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 32/126 (25%), Positives = 58/126 (46%), Gaps = 11/126 (8%)

Query: 307 YNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGM 366
           Y+++I+ + K G  D A   L++M  +    + + Y         SNL+E   K  +   
Sbjct: 12  YSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLY---------SNLIELSRKLCDYSK 62

Query: 367 KLITTKKVRSS--TPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIK 424
            +    +++ S  TP L    ++I +F +      A +L  E++ A  T  T  Y+TL+ 
Sbjct: 63  AISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTASYSTLLT 122

Query: 425 AYVKAK 430
            YV+ K
Sbjct: 123 MYVENK 128


>gi|255661180|gb|ACU25759.1| pentatricopeptide repeat-containing protein [Mulguraea aspera]
          Length = 426

 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 74/322 (22%), Positives = 149/322 (46%), Gaps = 22/322 (6%)

Query: 98  YNNLVIACLDKGVIKLSLEYMKKM---RVLGHSISYLVFNRLIILNSSPGRRKTIPNILR 154
           Y+ L+     +G+   +L +++KM   RV G  + Y   + LI L+          +I  
Sbjct: 12  YSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLY---SNLIELSRKLCDYSKAISIFS 68

Query: 155 QMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVAR 214
           ++K     P +  ++ ++ +            + S+M+ + V PN  SY  L T +   +
Sbjct: 69  RLKKSGFMPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVMPNTASYSTLLTMYVENK 128

Query: 215 LYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQEL---PNVRSKS 271
            +  A +    + +     + +T +++I +YG L   K+ ++++  ++++   PNV S +
Sbjct: 129 KFLEALSVFAEMREIKCFLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYN 188

Query: 272 YVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMS 331
            +L +  +G       A  L+  MQ     +    YNS++ +Y K    +KA+ L++EM 
Sbjct: 189 TLLRV--YGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQ 246

Query: 332 MNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTL--SIIE 389
             G +PN+ITY         S ++    K  +L    +  +K+RSS   ++  L  ++I 
Sbjct: 247 NRGIEPNSITY---------STIISIWGKVGKLDRAAMLFQKLRSSGVEIDQVLYQTMIV 297

Query: 390 IFAEKGDVGNAENLFEELKKAN 411
            +   G V +A+ L  ELK+ +
Sbjct: 298 AYERAGLVAHAKRLLHELKRPD 319



 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 77/370 (20%), Positives = 161/370 (43%), Gaps = 20/370 (5%)

Query: 65  YSYLLEFTIKNHGISQGEKLFCCIPKD-YQNELLYNNLVIACLDKG-VIKLSLEYMKKMR 122
           YS L+E + K    S+   +F  + K  +  +L+  N +I    K  + + +   + +MR
Sbjct: 47  YSNLIELSRKLCDYSKAISIFSRLKKSGFMPDLVAYNAMINVFGKAKLFREARSLISEMR 106

Query: 123 VLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIE 182
             G   +   ++ L+ +     +     ++  +M+  K    ++T +I++ +       +
Sbjct: 107 TAGVMPNTASYSTLLTMYVENKKFLEALSVFAEMREIKCFLDLTTCNIMIDVYGQLGMAK 166

Query: 183 GLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLI 242
              K++  M++  +EPN VSY  L   +  A L+  A      +++     N  T + ++
Sbjct: 167 EADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMM 226

Query: 243 ILYGYLAKGKDLERIWATVQELPN----VRSKSYVLAIEAFGRIAQVSRAEELWLEMQSV 298
           ++YG   K  + E+    +QE+ N      S +Y   I  +G++ ++ RA  L+ +++S 
Sbjct: 227 MIYG---KTLEHEKANNLIQEMQNRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSS 283

Query: 299 KQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEG 358
                   Y ++I  Y + G +  A  LL E+      P  I    LA     +  +EE 
Sbjct: 284 GVEIDQVLYQTMIVAYERAGLVAHAKRLLHELKRPDNIPRDIAIHILA----GAGRIEE- 338

Query: 359 FKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFV 418
             A  +  + I   +V+  T +      +I +F++    GN   +F++++   Y   + V
Sbjct: 339 --ATWVFRQAIDAGEVKDITVFER----MIYLFSKYKKYGNVVEVFDKMRGLGYFPDSNV 392

Query: 419 YNTLIKAYVK 428
              ++ AY K
Sbjct: 393 IALVLNAYGK 402



 Score = 42.7 bits (99), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 38/158 (24%), Positives = 70/158 (44%), Gaps = 11/158 (6%)

Query: 276 IEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGC 335
           IE   ++   S+A  ++  ++    +     YN++I+V+ K     +A  L+ EM   G 
Sbjct: 51  IELSRKLCDYSKAISIFSRLKKSGFMPDLVAYNAMINVFGKAKLFREARSLISEMRTAGV 110

Query: 336 KPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLS--IIEIFAE 393
            PN  +Y  L        +  E  K LE    L    ++R    +L+ T    +I+++ +
Sbjct: 111 MPNTASYSTLL------TMYVENKKFLE---ALSVFAEMREIKCFLDLTTCNIMIDVYGQ 161

Query: 394 KGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKI 431
            G    A+ LF  ++K         YNTL++ Y  A++
Sbjct: 162 LGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAEL 199


>gi|357480939|ref|XP_003610755.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355512090|gb|AES93713.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 596

 Score = 73.2 bits (178), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 73/309 (23%), Positives = 130/309 (42%), Gaps = 24/309 (7%)

Query: 158 ADKVAPHVST---FHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVAR 214
           A K  P+V +   +++++ I       + + K+  +MKR E       Y  L T   V R
Sbjct: 201 AKKQTPYVHSPEVYNLMVDILGKAKEFDLMWKLVKEMKRIE------GYVCLDTMSKVMR 254

Query: 215 LYTVAETYVEALEKSMTGNNWST---LDVLIILYGYLAKGKDLERIWATVQELPN---VR 268
            +  A+ + +A+E       +        L  L   L KG+ +E     + E  +   + 
Sbjct: 255 RFAKAQRHEDAVEAFRGMGKYGVEKDTAALNKLLDALVKGQSIEIAHNVLDEFKSSVPLS 314

Query: 269 SKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLK 328
           S S+ + I  + ++    +A ++  E +          YN+ I  YC +    K   +L+
Sbjct: 315 SPSFNILINGWCKVRNFEKARKVMEERKEHGFEPDVFTYNNFIESYCHDKDFRKVDEVLE 374

Query: 329 EMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSII 388
           EM  NGC PNA+TY  L LG  K+  + +  +  E   K      +   TP+     S++
Sbjct: 375 EMRGNGCPPNAVTYTILLLGYGKAGQLSKALEEYERMKK----DGIVPDTPFYS---SLM 427

Query: 389 EIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKINDP--NLLRRMILGGAR 446
            I  + G + +A  +F+++ K    +    YNT+I         +    LL+ M     +
Sbjct: 428 YILGKAGRLKDACEVFDDMPKQGVVRDVVTYNTMISTACAHSKEETALRLLKEMEETSCK 487

Query: 447 PDAETYSLL 455
           PD +TY  L
Sbjct: 488 PDLQTYHPL 496



 Score = 52.4 bits (124), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 51/201 (25%), Positives = 90/201 (44%), Gaps = 12/201 (5%)

Query: 151 NILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAH 210
           N+L + K+  V     +F+IL+       N E   KV  + K    EP+  +Y     ++
Sbjct: 302 NVLDEFKS-SVPLSSPSFNILINGWCKVRNFEKARKVMEERKEHGFEPDVFTYNNFIESY 360

Query: 211 AVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYG---YLAKG-KDLERIW--ATVQEL 264
              + +   +  +E +  +    N  T  +L++ YG    L+K  ++ ER+     V + 
Sbjct: 361 CHDKDFRKVDEVLEEMRGNGCPPNAVTYTILLLGYGKAGQLSKALEEYERMKKDGIVPDT 420

Query: 265 PNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKAS 324
           P   S  Y+L     G+  ++  A E++ +M     ++    YN++IS  C +   + A 
Sbjct: 421 PFYSSLMYIL-----GKAGRLKDACEVFDDMPKQGVVRDVVTYNTMISTACAHSKEETAL 475

Query: 325 GLLKEMSMNGCKPNAITYRHL 345
            LLKEM    CKP+  TY  L
Sbjct: 476 RLLKEMEETSCKPDLQTYHPL 496


>gi|297807255|ref|XP_002871511.1| hypothetical protein ARALYDRAFT_350399 [Arabidopsis lyrata subsp.
            lyrata]
 gi|297317348|gb|EFH47770.1| hypothetical protein ARALYDRAFT_350399 [Arabidopsis lyrata subsp.
            lyrata]
          Length = 1202

 Score = 73.2 bits (178), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 91/369 (24%), Positives = 159/369 (43%), Gaps = 22/369 (5%)

Query: 94   NELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNIL 153
            NE+LYN ++     KG +  +   +  M   G    +L +N LI      G  +     +
Sbjct: 761  NEVLYNTMIDGYSRKGDLVGARMKIDAMEKQGMKPDHLAYNCLIRTFCELGDMENAEQEV 820

Query: 154  RQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVA 213
             +MK   V+P V T++IL+      +  +    +  +M+ +   PN VSY  L       
Sbjct: 821  NKMKLKGVSPSVETYNILIGGYGRKYEFDKCFDLLKEMEDNGTMPNVVSYGTLINCLCKG 880

Query: 214  RLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQEL----PNVRS 269
                 A+     +E      N    ++LI   G  +KGK +E  +   +E+      +  
Sbjct: 881  SKLLEAQIVKRDMEDRGVSPNVRIYNMLID--GCCSKGK-IEDAFRFSEEMFKKGIELNL 937

Query: 270  KSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATE-QYNSVISVYCKNGFIDKASGLLK 328
             +Y   I+      +++ AE++ LE+ S K LK     YNS+IS Y   G + +   L +
Sbjct: 938  VTYNTLIDGLSMNGKLAEAEDMLLEI-SRKGLKPDVFTYNSLISGYRFAGNVQRCIALYE 996

Query: 329  EMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSII 388
            EM  +G KP   TY  L   C K        + +EL  K+     ++   P L     ++
Sbjct: 997  EMKTSGIKPTLKTYHLLISLCTK--------EGIELTKKIFGEMSLQ---PDLLVYNGVL 1045

Query: 389  EIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVK-AKIND-PNLLRRMILGGAR 446
              +A  GD+  A NL +++ + +       YN+LI   +K  K+ +  +L+  M      
Sbjct: 1046 HCYAVHGDMDKAFNLQKQMIEKSIGLDKTTYNSLILGQLKVGKLCEVRSLIDEMKAREME 1105

Query: 447  PDAETYSLL 455
            P+A+TY ++
Sbjct: 1106 PEADTYDII 1114



 Score = 72.8 bits (177), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 104/481 (21%), Positives = 182/481 (37%), Gaps = 82/481 (17%)

Query: 32   SINRLRKLQLNKRALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQGEKLFCCIPKD 91
            +I    KL    + LE+   +  +R   P    Y+ L++   K   +   E+LF      
Sbjct: 558  AIQAAVKLSDVGKGLELFNRMKHDR-ISPTVFIYNVLIDGLCKVRQMKDAEQLF------ 610

Query: 92   YQNELL----------YNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNS 141
              +E+L          YN L+      G  + S +  ++M+      S + FN L+    
Sbjct: 611  --DEMLARRLLPSLITYNTLIDGYCKDGNPEKSFKVRERMKADNIEPSLITFNTLLKGLF 668

Query: 142  SPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSD----------- 190
              G  +   N+L +MK     P   TF IL    +++   +  + VY             
Sbjct: 669  KAGMVEDAENVLTEMKDQGFVPDAFTFSILFDGYSSNDKADAALGVYETAVDSGLKMNAY 728

Query: 191  ---------MKRSEVE---------------PNEVSYCILATAHAVARLYTVAETYVEAL 226
                      K  ++E               PNEV Y  +   ++       A   ++A+
Sbjct: 729  TCSILLNALCKEGQIEKAEEILGREMAKGLVPNEVLYNTMIDGYSRKGDLVGARMKIDAM 788

Query: 227  EKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQEL------PNVRSKSYVLAIEAFG 280
            EK     +    + LI  +  L    D+E     V ++      P+V  ++Y + I  +G
Sbjct: 789  EKQGMKPDHLAYNCLIRTFCELG---DMENAEQEVNKMKLKGVSPSV--ETYNILIGGYG 843

Query: 281  RIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAI 340
            R  +  +  +L  EM+    +     Y ++I+  CK   + +A  + ++M   G  PN  
Sbjct: 844  RKYEFDKCFDLLKEMEDNGTMPNVVSYGTLINCLCKGSKLLEAQIVKRDMEDRGVSPNVR 903

Query: 341  TYRHLALGCFKSNLVEEGFK-ALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGN 399
             Y  L  GC     +E+ F+ + E+  K I    V  +T        +I+  +  G +  
Sbjct: 904  IYNMLIDGCCSKGKIEDAFRFSEEMFKKGIELNLVTYNT--------LIDGLSMNGKLAE 955

Query: 400  AENLFEELKKANYTKYTFVYNTLIKAY-----VKAKINDPNLLRRMILGGARPDAETYSL 454
            AE++  E+ +       F YN+LI  Y     V+  I    L   M   G +P  +TY L
Sbjct: 956  AEDMLLEISRKGLKPDVFTYNSLISGYRFAGNVQRCI---ALYEEMKTSGIKPTLKTYHL 1012

Query: 455  L 455
            L
Sbjct: 1013 L 1013



 Score = 49.7 bits (117), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 58/227 (25%), Positives = 93/227 (40%), Gaps = 13/227 (5%)

Query: 235 WSTLDVLIILYGYLAKGKDLE---RIWATVQELPNVRSK-SYVLAIEAFGRIAQVSRAEE 290
           + + D L +L  +L K K       ++  + E     SK  Y  AI+A  +++ V +  E
Sbjct: 514 FPSSDSLTLLLDHLVKTKQFRVTINVFLNILESDFRPSKFMYGKAIQAAVKLSDVGKGLE 573

Query: 291 LWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCF 350
           L+  M+  +       YN +I   CK   +  A  L  EM      P+ ITY  L  G  
Sbjct: 574 LFNRMKHDRISPTVFIYNVLIDGLCKVRQMKDAEQLFDEMLARRLLPSLITYNTLIDGYC 633

Query: 351 KSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKA 410
           K    E+ FK  E         K  +  P L T  ++++   + G V +AEN+  E+K  
Sbjct: 634 KDGNPEKSFKVRE-------RMKADNIEPSLITFNTLLKGLFKAGMVEDAENVLTEMKDQ 686

Query: 411 NYTKYTFVYNTLIKAYVKAKINDPNL--LRRMILGGARPDAETYSLL 455
            +    F ++ L   Y      D  L      +  G + +A T S+L
Sbjct: 687 GFVPDAFTFSILFDGYSSNDKADAALGVYETAVDSGLKMNAYTCSIL 733



 Score = 44.7 bits (104), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 51/233 (21%), Positives = 105/233 (45%), Gaps = 23/233 (9%)

Query: 94   NELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNIL 153
            N  +YN L+  C  KG I+ +  + ++M   G  ++ + +N LI   S  G+     ++L
Sbjct: 901  NVRIYNMLIDGCCSKGKIEDAFRFSEEMFKKGIELNLVTYNTLIDGLSMNGKLAEAEDML 960

Query: 154  RQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVA 213
             ++    + P V T++ L+       N++  + +Y +MK S ++P       L T H + 
Sbjct: 961  LEISRKGLKPDVFTYNSLISGYRFAGNVQRCIALYEEMKTSGIKPT------LKTYHLLI 1014

Query: 214  RLYTVAETYVEALEKSMTGNNWSTLDVLI---ILYGYLAKGKDLERIWATVQE------- 263
             L T  +  +E L K + G      D+L+   +L+ Y   G D+++ +   ++       
Sbjct: 1015 SLCT--KEGIE-LTKKIFGEMSLQPDLLVYNGVLHCYAVHG-DMDKAFNLQKQMIEKSIG 1070

Query: 264  LPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCK 316
            L      S +L     G++ +V     L  EM++ +     + Y+ ++  +C+
Sbjct: 1071 LDKTTYNSLILGQLKVGKLCEV---RSLIDEMKAREMEPEADTYDIIVKGHCE 1120


>gi|449449675|ref|XP_004142590.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04760,
           chloroplastic-like [Cucumis sativus]
          Length = 581

 Score = 73.2 bits (178), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 85/336 (25%), Positives = 155/336 (46%), Gaps = 23/336 (6%)

Query: 38  KLQLNKRALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQGEKLFC-CIPKDYQNEL 96
           KL+L   A EVM+ ++++   +P  + Y+ L+E TI    I++  +LF   + +  + +L
Sbjct: 181 KLEL---AFEVMDELLKDG-CKPSVITYTILIEATILEGRINEALELFDELVSRGLRPDL 236

Query: 97  -LYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLI--ILNSSPGRRKTIPNIL 153
             YN ++     +G+   +L++++ +   G +   + +N L+   LN S  R +    ++
Sbjct: 237 YTYNAIIRGICKEGMEDRALDFVRHLSARGCNPDVVSYNILLRSFLNKS--RWEDGERLM 294

Query: 154 RQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVA 213
           + M      P+V T  IL+     +  +   + V   MK   + P+  SY  L +A    
Sbjct: 295 KDMVLSGCEPNVVTHSILISSFCREGRVREAVNVLEVMKEKGLTPDSYSYDPLISAFCKE 354

Query: 214 RLYTVAETYVEALEKSMTGN------NWSTLDVLIILYGYLAKGKDLERIWATVQELPNV 267
               +A   +E LEK ++        N++T+   +  +G      D+      V   P V
Sbjct: 355 GRLDLA---IEYLEKMVSDGCLPDIVNYNTILATLCKFGCADLALDVFEKLDEVGCPPTV 411

Query: 268 RSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATE-QYNSVISVYCKNGFIDKASGL 326
           R+  Y     A        +A E+  EM   K +   E  YNS+IS  C++G +D+A GL
Sbjct: 412 RA--YNTMFSALWSCGNKIKALEMISEMIR-KGIDPDEITYNSLISCLCRDGLVDEAIGL 468

Query: 327 LKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKAL 362
           L +M     +P  I++  + LG  K++ V EG + L
Sbjct: 469 LVDMEATRFQPTVISFNIVLLGMCKAHRVFEGIELL 504



 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 71/299 (23%), Positives = 127/299 (42%), Gaps = 17/299 (5%)

Query: 163 PHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETY 222
           P V     L+K   N  N++  M+V  ++  +  +P+  SY  + +  + A     A   
Sbjct: 95  PDVVLCTKLIKGFFNSRNLKKAMRVM-EILETYGDPDVYSYNAMISGFSKANQIDSANQV 153

Query: 223 VEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSK----SYVLAIEA 278
            + +       +  T +++I   G L     LE  +  + EL     K    +Y + IEA
Sbjct: 154 FDRMRSRGFSPDVVTYNIMI---GSLCSRGKLELAFEVMDELLKDGCKPSVITYTILIEA 210

Query: 279 FGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPN 338
                +++ A EL+ E+ S         YN++I   CK G  D+A   ++ +S  GC P+
Sbjct: 211 TILEGRINEALELFDELVSRGLRPDLYTYNAIIRGICKEGMEDRALDFVRHLSARGCNPD 270

Query: 339 AITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVG 398
            ++Y  L       +  E+       G +L+    +    P + T   +I  F  +G V 
Sbjct: 271 VVSYNILLRSFLNKSRWED-------GERLMKDMVLSGCEPNVVTHSILISSFCREGRVR 323

Query: 399 NAENLFEELKKANYTKYTFVYNTLIKAYVKAKINDPNL--LRRMILGGARPDAETYSLL 455
            A N+ E +K+   T  ++ Y+ LI A+ K    D  +  L +M+  G  PD   Y+ +
Sbjct: 324 EAVNVLEVMKEKGLTPDSYSYDPLISAFCKEGRLDLAIEYLEKMVSDGCLPDIVNYNTI 382



 Score = 62.0 bits (149), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 89/394 (22%), Positives = 158/394 (40%), Gaps = 41/394 (10%)

Query: 98  YNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMK 157
           YN ++        I  + +   +MR  G S   + +N +I    S G+ +    ++ ++ 
Sbjct: 134 YNAMISGFSKANQIDSANQVFDRMRSRGFSPDVVTYNIMIGSLCSRGKLELAFEVMDELL 193

Query: 158 ADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYT 217
            D   P V T+ IL++    +  I   ++++ ++    + P+  +Y  +        +  
Sbjct: 194 KDGCKPSVITYTILIEATILEGRINEALELFDELVSRGLRPDLYTYNAIIRGICKEGMED 253

Query: 218 VAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGK--DLERIWATV---QELPNVRSKSY 272
            A  +V  L  S  G N   +   I+L  +L K +  D ER+   +      PNV + S 
Sbjct: 254 RALDFVRHL--SARGCNPDVVSYNILLRSFLNKSRWEDGERLMKDMVLSGCEPNVVTHS- 310

Query: 273 VLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSM 332
            + I +F R  +V  A  +   M+       +  Y+ +IS +CK G +D A   L++M  
Sbjct: 311 -ILISSFCREGRVREAVNVLEVMKEKGLTPDSYSYDPLISAFCKEGRLDLAIEYLEKMVS 369

Query: 333 NGCKPNAITYR------------HLALGCFKSNLVEEG-----------FKAL-ELGMKL 368
           +GC P+ + Y              LAL  F+  L E G           F AL   G K+
Sbjct: 370 DGCLPDIVNYNTILATLCKFGCADLALDVFE-KLDEVGCPPTVRAYNTMFSALWSCGNKI 428

Query: 369 ----ITTKKVRSSTPWLETTL-SIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLI 423
               + ++ +R      E T  S+I      G V  A  L  +++   +      +N ++
Sbjct: 429 KALEMISEMIRKGIDPDEITYNSLISCLCRDGLVDEAIGLLVDMEATRFQPTVISFNIVL 488

Query: 424 KAYVKAK--INDPNLLRRMILGGARPDAETYSLL 455
               KA        LL  M+  G  P+  +Y LL
Sbjct: 489 LGMCKAHRVFEGIELLITMVEKGCLPNETSYVLL 522


>gi|307135890|gb|ADN33755.1| pentatricopeptide repeat-containing protein [Cucumis melo subsp.
           melo]
          Length = 566

 Score = 73.2 bits (178), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 89/372 (23%), Positives = 151/372 (40%), Gaps = 28/372 (7%)

Query: 98  YNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMK 157
           Y  LV +   KG +  +++ + KM   G+  + + +N L+      G       +L ++ 
Sbjct: 135 YTFLVSSLCRKGNVGYAMQLVDKMEEYGYPTNTVTYNSLVRGLCMHGNLTQSLQLLDRLI 194

Query: 158 ADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAV-ARLY 216
              + P+  T+  L++    +   +   K+  ++     EPN VSY +L T      R  
Sbjct: 195 QKGLVPNAYTYSFLLEAAYKERGADEASKLLDEIIAKGGEPNLVSYNVLLTGLCKEGRTE 254

Query: 217 TVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQEL-----PNVRSKS 271
                + E   K  + N        ++ Y  L +    E  W     L      + RS S
Sbjct: 255 DAIRLFRELPSKGFSPN--------VVSYNILLRSLCNEGRWEEANVLLAEMNGDERSPS 306

Query: 272 YVLAIEAFGRIAQVSRAE---ELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLK 328
            V      G +A   R E   E+  EM   +       YN +I+  CK+G +D     L 
Sbjct: 307 TVTYNILIGSLALHGRTEHALEVLEEMIRARFKPTASSYNPIIAHLCKDGKLDLVVKCLD 366

Query: 329 EMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALE-LGMKLITTKKVRSSTPWLETTLSI 387
           +M    C PN  TY  +A  C +  +V+E F  ++ LG       K  SST   E    +
Sbjct: 367 QMMYRHCNPNEGTYNAIATLC-EEGMVQEAFSIIQSLG------NKQHSSTQ--EFYKIV 417

Query: 388 IEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAY-VKAKINDPNLLRRMILGGAR 446
           I     KG+   A  L  E+ K  +T  +F Y++LI+   ++  +N+   +  ++    +
Sbjct: 418 ITSLCRKGNTYPAFQLLYEMTKYGFTPDSFTYSSLIRGLCMEGMLNEAIEIFSVMEENNK 477

Query: 447 PDAETYSLLKLA 458
           PD E Y+ L L 
Sbjct: 478 PDTENYNSLILG 489



 Score = 68.6 bits (166), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 95/385 (24%), Positives = 159/385 (41%), Gaps = 39/385 (10%)

Query: 1   IERLPRGEPVGSAFQ--SWMRE-GFPVH--------RGEIFHSINRLRKLQLNKRALEVM 49
           +  L R   VG A Q    M E G+P +        RG   H  N  + LQL  R ++  
Sbjct: 139 VSSLCRKGNVGYAMQLVDKMEEYGYPTNTVTYNSLVRGLCMHG-NLTQSLQLLDRLIQ-- 195

Query: 50  EWVIRERPYRPKELDYSYLLEFTIKNHGISQGEKLFC-CIPKDYQNELL-YNNLVIACLD 107
                 +   P    YS+LLE   K  G  +  KL    I K  +  L+ YN L+     
Sbjct: 196 ------KGLVPNAYTYSFLLEAAYKERGADEASKLLDEIIAKGGEPNLVSYNVLLTGLCK 249

Query: 108 KGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVST 167
           +G  + ++   +++   G S + + +N L+    + GR +    +L +M  D+ +P   T
Sbjct: 250 EGRTEDAIRLFRELPSKGFSPNVVSYNILLRSLCNEGRWEEANVLLAEMNGDERSPSTVT 309

Query: 168 FHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSY-CILATAHAVARLYTVAETYVEAL 226
           ++IL+   A     E  ++V  +M R+  +P   SY  I+A      +L  V    V+ L
Sbjct: 310 YNILIGSLALHGRTEHALEVLEEMIRARFKPTASSYNPIIAHLCKDGKLDLV----VKCL 365

Query: 227 EKSM---TGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSKS----YVLAIEAF 279
           ++ M      N  T + +      L +   ++  ++ +Q L N +  S    Y + I + 
Sbjct: 366 DQMMYRHCNPNEGTYNAI----ATLCEEGMVQEAFSIIQSLGNKQHSSTQEFYKIVITSL 421

Query: 280 GRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNA 339
            R      A +L  EM        +  Y+S+I   C  G +++A  +   M  N  KP+ 
Sbjct: 422 CRKGNTYPAFQLLYEMTKYGFTPDSFTYSSLIRGLCMEGMLNEAIEIFSVMEENN-KPDT 480

Query: 340 ITYRHLALGCFKSNLVEEGFKALEL 364
             Y  L LGC KS   +      E+
Sbjct: 481 ENYNSLILGCCKSRRTDLALDVFEI 505



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 46/189 (24%), Positives = 83/189 (43%), Gaps = 9/189 (4%)

Query: 269 SKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLK 328
           + SY   + +  R   V  A +L  +M+       T  YNS++   C +G + ++  LL 
Sbjct: 132 ASSYTFLVSSLCRKGNVGYAMQLVDKMEEYGYPTNTVTYNSLVRGLCMHGNLTQSLQLLD 191

Query: 329 EMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSII 388
            +   G  PNA TY  L    +K    +E  K L+   ++I     +   P L +   ++
Sbjct: 192 RLIQKGLVPNAYTYSFLLEAAYKERGADEASKLLD---EII----AKGGEPNLVSYNVLL 244

Query: 389 EIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYV-KAKINDPNLLRRMILGGAR- 446
               ++G   +A  LF EL    ++     YN L+++   + +  + N+L   + G  R 
Sbjct: 245 TGLCKEGRTEDAIRLFRELPSKGFSPNVVSYNILLRSLCNEGRWEEANVLLAEMNGDERS 304

Query: 447 PDAETYSLL 455
           P   TY++L
Sbjct: 305 PSTVTYNIL 313


>gi|15239874|ref|NP_196771.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75171712|sp|Q9FMQ1.1|PP376_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g12100, mitochondrial; Flags: Precursor
 gi|9759377|dbj|BAB10028.1| unnamed protein product [Arabidopsis thaliana]
 gi|28973713|gb|AAO64173.1| unknown protein [Arabidopsis thaliana]
 gi|29824237|gb|AAP04079.1| unknown protein [Arabidopsis thaliana]
 gi|110737169|dbj|BAF00534.1| hypothetical protein [Arabidopsis thaliana]
 gi|332004380|gb|AED91763.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 816

 Score = 73.2 bits (178), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 93/372 (25%), Positives = 163/372 (43%), Gaps = 28/372 (7%)

Query: 94  NELLYNNLVIACLDKGVI---KLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIP 150
           NE++YN ++     KG +   ++ +E M+K    G    +L +N LI      G  +   
Sbjct: 388 NEVIYNTMIDGYCRKGDLVGARMKIEAMEKQ---GMKPDHLAYNCLIRRFCELGEMENAE 444

Query: 151 NILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAH 210
             + +MK   V+P V T++IL+      +  +    +  +M+ +   PN VSY  L    
Sbjct: 445 KEVNKMKLKGVSPSVETYNILIGGYGRKYEFDKCFDILKEMEDNGTMPNVVSYGTLINCL 504

Query: 211 AVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQEL----PN 266
                   A+     +E           ++LI   G  +KGK +E  +   +E+      
Sbjct: 505 CKGSKLLEAQIVKRDMEDRGVSPKVRIYNMLI--DGCCSKGK-IEDAFRFSKEMLKKGIE 561

Query: 267 VRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATE-QYNSVISVYCKNGFIDKASG 325
           +   +Y   I+      ++S AE+L LE+ S K LK     YNS+IS Y   G + +   
Sbjct: 562 LNLVTYNTLIDGLSMTGKLSEAEDLLLEI-SRKGLKPDVFTYNSLISGYGFAGNVQRCIA 620

Query: 326 LLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTL 385
           L +EM  +G KP   TY  L   C K        + +EL  +L     ++   P L    
Sbjct: 621 LYEEMKRSGIKPTLKTYHLLISLCTK--------EGIELTERLFGEMSLK---PDLLVYN 669

Query: 386 SIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVK-AKIND-PNLLRRMILG 443
            ++  +A  GD+  A NL +++ + +       YN+LI   +K  K+ +  +L+  M   
Sbjct: 670 GVLHCYAVHGDMEKAFNLQKQMIEKSIGLDKTTYNSLILGQLKVGKLCEVRSLIDEMNAR 729

Query: 444 GARPDAETYSLL 455
              P+A+TY+++
Sbjct: 730 EMEPEADTYNII 741



 Score = 72.8 bits (177), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 105/437 (24%), Positives = 180/437 (41%), Gaps = 41/437 (9%)

Query: 38  KLQLNKRALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQGEKLFCCIPKDYQNELL 97
           KL    + LE+   +  +R Y P    Y+ L++   K   ++  E+LF        +E+L
Sbjct: 191 KLSDVGKGLELFNRMKHDRIY-PSVFIYNVLIDGLCKGKRMNDAEQLF--------DEML 241

Query: 98  ----------YNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRK 147
                     YN L+      G  + S +  ++M+      S + FN L+      G  +
Sbjct: 242 ARRLLPSLITYNTLIDGYCKAGNPEKSFKVRERMKADHIEPSLITFNTLLKGLFKAGMVE 301

Query: 148 TIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILA 207
              N+L++MK     P   TF IL    +++   E  + VY     S V+ N  +  IL 
Sbjct: 302 DAENVLKEMKDLGFVPDAFTFSILFDGYSSNEKAEAALGVYETAVDSGVKMNAYTCSILL 361

Query: 208 TAHAV-ARLYTVAETYVEALEKSMTGNN--WSTLDVLIILYGYLAKGKDLERIWATVQEL 264
            A     ++    E     + K +  N   ++T+     + GY  KG DL      ++ +
Sbjct: 362 NALCKEGKIEKAEEILGREMAKGLVPNEVIYNTM-----IDGYCRKG-DLVGARMKIEAM 415

Query: 265 PNVRSK----SYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFI 320
                K    +Y   I  F  + ++  AE+   +M+      + E YN +I  Y +    
Sbjct: 416 EKQGMKPDHLAYNCLIRRFCELGEMENAEKEVNKMKLKGVSPSVETYNILIGGYGRKYEF 475

Query: 321 DKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPW 380
           DK   +LKEM  NG  PN ++Y  L       N + +G K LE  + +    + R  +P 
Sbjct: 476 DKCFDILKEMEDNGTMPNVVSYGTLI------NCLCKGSKLLEAQI-VKRDMEDRGVSPK 528

Query: 381 LETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAY-VKAKINDP-NLLR 438
           +     +I+    KG + +A    +E+ K         YNTLI    +  K+++  +LL 
Sbjct: 529 VRIYNMLIDGCCSKGKIEDAFRFSKEMLKKGIELNLVTYNTLIDGLSMTGKLSEAEDLLL 588

Query: 439 RMILGGARPDAETYSLL 455
            +   G +PD  TY+ L
Sbjct: 589 EISRKGLKPDVFTYNSL 605



 Score = 52.8 bits (125), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 51/196 (26%), Positives = 85/196 (43%), Gaps = 11/196 (5%)

Query: 235 WSTLDVLIILYGYLAKGKDLE---RIWATVQELPNVRSK-SYVLAIEAFGRIAQVSRAEE 290
           + + D L +L  +L K K       ++  + E     SK  Y  AI+A  +++ V +  E
Sbjct: 141 YPSSDSLTLLLDHLVKTKQFRVTINVFLNILESDFRPSKFMYGKAIQAAVKLSDVGKGLE 200

Query: 291 LWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCF 350
           L+  M+  +   +   YN +I   CK   ++ A  L  EM      P+ ITY  L  G  
Sbjct: 201 LFNRMKHDRIYPSVFIYNVLIDGLCKGKRMNDAEQLFDEMLARRLLPSLITYNTLIDGYC 260

Query: 351 KSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKA 410
           K+   E+ FK  E         K     P L T  ++++   + G V +AEN+ +E+K  
Sbjct: 261 KAGNPEKSFKVRE-------RMKADHIEPSLITFNTLLKGLFKAGMVEDAENVLKEMKDL 313

Query: 411 NYTKYTFVYNTLIKAY 426
            +    F ++ L   Y
Sbjct: 314 GFVPDAFTFSILFDGY 329



 Score = 51.6 bits (122), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 53/230 (23%), Positives = 104/230 (45%), Gaps = 23/230 (10%)

Query: 97  LYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQM 156
           +YN L+  C  KG I+ +  + K+M   G  ++ + +N LI   S  G+     ++L ++
Sbjct: 531 IYNMLIDGCCSKGKIEDAFRFSKEMLKKGIELNLVTYNTLIDGLSMTGKLSEAEDLLLEI 590

Query: 157 KADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLY 216
               + P V T++ L+       N++  + +Y +MKRS ++P       L T H +  L 
Sbjct: 591 SRKGLKPDVFTYNSLISGYGFAGNVQRCIALYEEMKRSGIKPT------LKTYHLLISLC 644

Query: 217 TVAETYVEALEKSMTGNNWSTLDVLI---ILYGYLAKGKDLERIWATVQE-------LPN 266
           T  +  +E  E+ + G      D+L+   +L+ Y   G D+E+ +   ++       L  
Sbjct: 645 T--KEGIELTER-LFGEMSLKPDLLVYNGVLHCYAVHG-DMEKAFNLQKQMIEKSIGLDK 700

Query: 267 VRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCK 316
               S +L     G++ +V     L  EM + +     + YN ++  +C+
Sbjct: 701 TTYNSLILGQLKVGKLCEV---RSLIDEMNAREMEPEADTYNIIVKGHCE 747


>gi|255661148|gb|ACU25743.1| pentatricopeptide repeat-containing protein [Verbena bonariensis]
          Length = 425

 Score = 73.2 bits (178), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 74/322 (22%), Positives = 149/322 (46%), Gaps = 22/322 (6%)

Query: 98  YNNLVIACLDKGVIKLSLEYMKKM---RVLGHSISYLVFNRLIILNSSPGRRKTIPNILR 154
           Y+ L+     +G+   +L +++KM   RV G  + Y   + LI L+          +I  
Sbjct: 12  YSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLY---SNLIELSRKLCDYSKAISIFS 68

Query: 155 QMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVAR 214
           ++K     P +  ++ ++ +            + S+M+ + V PN  SY  L T +   +
Sbjct: 69  RLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTASYSTLLTMYVENK 128

Query: 215 LYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQEL---PNVRSKS 271
            +  A +    + +     + +T +++I +YG L   K+ ++++  ++++   PNV S +
Sbjct: 129 KFLEALSIFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYN 188

Query: 272 YVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMS 331
            +L +  +G       A  L+  MQ     +    YNS++ +Y K    +KA+ L++EM 
Sbjct: 189 TLLRV--YGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQ 246

Query: 332 MNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTL--SIIE 389
             G +PN+ITY         S ++    K  +L    +  +K+RSS   ++  L  ++I 
Sbjct: 247 NRGIEPNSITY---------STIISIWGKVGKLDRAAMLFQKLRSSGVDIDQVLYQTMIV 297

Query: 390 IFAEKGDVGNAENLFEELKKAN 411
            +   G V +A+ L  ELK+ +
Sbjct: 298 AYERAGLVAHAKRLLHELKRPD 319



 Score = 56.2 bits (134), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 77/370 (20%), Positives = 162/370 (43%), Gaps = 20/370 (5%)

Query: 65  YSYLLEFTIKNHGISQGEKLFCCIPKD-YQNELLYNNLVIACLDKG-VIKLSLEYMKKMR 122
           YS L+E + K    S+   +F  + +  +  +L+  N +I    K  + + +   + +MR
Sbjct: 47  YSNLIELSRKLCDYSKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMR 106

Query: 123 VLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIE 182
             G + +   ++ L+ +     +     +I  +M+  K    ++T +I++ +       +
Sbjct: 107 TAGVTPNTASYSTLLTMYVENKKFLEALSIFAEMREIKCLLDLTTCNIMIDVYGQLGMAK 166

Query: 183 GLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLI 242
              K++  M++  +EPN VSY  L   +  A L+  A      +++     N  T + ++
Sbjct: 167 EADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMM 226

Query: 243 ILYGYLAKGKDLERIWATVQELPN----VRSKSYVLAIEAFGRIAQVSRAEELWLEMQSV 298
           ++YG   K  + E+    +QE+ N      S +Y   I  +G++ ++ RA  L+ +++S 
Sbjct: 227 MIYG---KTLEHEKANNLIQEMQNRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSS 283

Query: 299 KQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEG 358
                   Y ++I  Y + G +  A  LL E+      P  I    LA     +  +EE 
Sbjct: 284 GVDIDQVLYQTMIVAYERAGLVAHAKRLLHELKRPDNIPRDIAIHILA----GAGRIEE- 338

Query: 359 FKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFV 418
             A  +  + I   +V+  T +      +I +F++    GN   +F++++   Y   + V
Sbjct: 339 --ATWVFRQAIDAGEVKDITVFER----MIHLFSKYKKYGNVVEVFDKMRGLGYFPDSNV 392

Query: 419 YNTLIKAYVK 428
              ++ AY K
Sbjct: 393 IALVLNAYGK 402



 Score = 41.6 bits (96), Expect = 0.97,   Method: Compositional matrix adjust.
 Identities = 33/125 (26%), Positives = 60/125 (48%), Gaps = 7/125 (5%)

Query: 307 YNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGM 366
           YN++I+V+ K     +A  L+ EM   G  PN  +Y  L L  +  N  ++  +AL +  
Sbjct: 82  YNAMINVFGKAKLFREARSLISEMRTAGVTPNTASYSTL-LTMYVEN--KKFLEALSIFA 138

Query: 367 KLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAY 426
           ++   K +      L T   +I+++ + G    A+ LF  ++K         YNTL++ Y
Sbjct: 139 EMREIKCLLD----LTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVY 194

Query: 427 VKAKI 431
             A++
Sbjct: 195 GDAEL 199



 Score = 40.0 bits (92), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 32/126 (25%), Positives = 58/126 (46%), Gaps = 11/126 (8%)

Query: 307 YNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGM 366
           Y+++I+ + K G  D A   L++M  +    + + Y         SNL+E   K  +   
Sbjct: 12  YSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLY---------SNLIELSRKLCDYSK 62

Query: 367 KLITTKKVRSS--TPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIK 424
            +    +++ S  TP L    ++I +F +      A +L  E++ A  T  T  Y+TL+ 
Sbjct: 63  AISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTASYSTLLT 122

Query: 425 AYVKAK 430
            YV+ K
Sbjct: 123 MYVENK 128


>gi|410110113|gb|AFV61136.1| pentatricopeptide repeat-containing protein 123, partial [Lippia
           filifolia]
          Length = 439

 Score = 73.2 bits (178), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 71/319 (22%), Positives = 147/319 (46%), Gaps = 16/319 (5%)

Query: 98  YNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMK 157
           Y+ L+     +G+   +L +++KM         ++++ LI L+          +I  ++K
Sbjct: 18  YSTLITHFGKEGLFDAALSWLQKMEQDQVPGDLVLYSNLIELSRKLCDYSKAISIFSRLK 77

Query: 158 ADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYT 217
                P +  ++ ++ +            + S+MK + V PN  SY  L T +   + + 
Sbjct: 78  RSGFTPDLVAYNAMINVFGKAKLFREARSLISEMKTAGVMPNTTSYSTLLTMYVENKKFL 137

Query: 218 VAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQEL---PNVRSKSYVL 274
            A +    + +     + +T +++I +YG L   K+ ++++  ++++   PNV S + +L
Sbjct: 138 EALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTLL 197

Query: 275 AIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNG 334
            +  +G       A  L+  MQ     +    YNS++ +Y K    +KA+ L++EM   G
Sbjct: 198 RV--YGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQSRG 255

Query: 335 CKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTL--SIIEIFA 392
            +PN+ITY         S ++    K  +L    +  +K+RSS   ++  L  ++I  + 
Sbjct: 256 IEPNSITY---------STIISIWGKVGKLDRAAMLFQKLRSSGVEIDQILFQTMIVAYE 306

Query: 393 EKGDVGNAENLFEELKKAN 411
             G V +A+ L  ELK+ +
Sbjct: 307 RAGLVAHAKRLLHELKRPD 325



 Score = 47.0 bits (110), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 54/247 (21%), Positives = 99/247 (40%), Gaps = 45/247 (18%)

Query: 187 VYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYG 246
           ++ +M+R  + P+  +Y  L T      L+  A ++++ +E+     +       ++LY 
Sbjct: 2   LFDEMRRRALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDQVPGD-------LVLYS 54

Query: 247 YLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQ 306
            L    +L R           +   Y  AI  F R+ +     +L               
Sbjct: 55  NLI---ELSR-----------KLCDYSKAISIFSRLKRSGFTPDLV-------------A 87

Query: 307 YNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGM 366
           YN++I+V+ K     +A  L+ EM   G  PN  +Y  L        +  E  K LE   
Sbjct: 88  YNAMINVFGKAKLFREARSLISEMKTAGVMPNTTSYSTLL------TMYVENKKFLE--- 138

Query: 367 KLITTKKVRSSTPWLETTLS--IIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIK 424
            L    ++R     L+ T    +I+++ + G    A+ LF  ++K         YNTL++
Sbjct: 139 ALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTLLR 198

Query: 425 AYVKAKI 431
            Y  A++
Sbjct: 199 VYGDAEL 205



 Score = 40.4 bits (93), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 35/134 (26%), Positives = 55/134 (41%), Gaps = 11/134 (8%)

Query: 325 GLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPW-LET 383
           GL  EM      P+  TY  L     K  L +     L+        K  +   P  L  
Sbjct: 1   GLFDEMRRRALSPDRYTYSTLITHFGKEGLFDAALSWLQ--------KMEQDQVPGDLVL 52

Query: 384 TLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKI--NDPNLLRRMI 441
             ++IE+  +  D   A ++F  LK++ +T     YN +I  + KAK+     +L+  M 
Sbjct: 53  YSNLIELSRKLCDYSKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMK 112

Query: 442 LGGARPDAETYSLL 455
             G  P+  +YS L
Sbjct: 113 TAGVMPNTTSYSTL 126


>gi|224107985|ref|XP_002314678.1| predicted protein [Populus trichocarpa]
 gi|222863718|gb|EEF00849.1| predicted protein [Populus trichocarpa]
          Length = 497

 Score = 73.2 bits (178), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 71/268 (26%), Positives = 116/268 (43%), Gaps = 22/268 (8%)

Query: 203 YCILATAHAVARLYTVAETYVEAL------EKSMTGNNWSTLDVLIILYGYLAKGKDLER 256
           Y  LATA  V R    A  Y +A+      EK     +   L+VL+     L K  D+E 
Sbjct: 154 YVSLATASKVMRRLAKARKYKDAIDVFRGIEKYGASKDREALNVLM---DALVKEGDVED 210

Query: 257 IWATVQELPN---VRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISV 313
             +   E  +   + S S+ + I  + +      A ++  EM+          Y+  I+ 
Sbjct: 211 AHSAFLEFKDCITLDSSSFNILIHGYCKARMFVVARKIMEEMEKHGFHPDVVSYSCFIAA 270

Query: 314 YCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKK 373
           YC+         +  EM   GCKPN ITY  +     K+  + E   ALE+  K+    K
Sbjct: 271 YCEQKDFRNVEAVFDEMQEKGCKPNVITYTTVMHALGKARQLNE---ALEVYEKM----K 323

Query: 374 VRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKIND 433
                P  +   S+I + ++ G + +A ++FE+++K    +  +VYNT+I +        
Sbjct: 324 RNGCLPDSKFYSSLIYVLSQSGRIKDAWDVFEDMEKQGVCRNLWVYNTMISSACAHSQGG 383

Query: 434 P--NLLRRMILGGARPDAETYS-LLKLA 458
               LL RM     +PD +TY+ LLK+ 
Sbjct: 384 SALKLLERMEGDSCKPDVKTYAPLLKMC 411



 Score = 43.9 bits (102), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 51/270 (18%), Positives = 109/270 (40%), Gaps = 41/270 (15%)

Query: 118 MKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEAN 177
           +++M+ L   +S    ++++   +   + K   ++ R ++    +      ++LM     
Sbjct: 145 VEQMKGLNGYVSLATASKVMRRLAKARKYKDAIDVFRGIEKYGASKDREALNVLMDALVK 204

Query: 178 DHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWST 237
           + ++E     + + K   +  +  S+ IL   +  AR++ VA   +E +EK     +  +
Sbjct: 205 EGDVEDAHSAFLEFKDC-ITLDSSSFNILIHGYCKARMFVVARKIMEEMEKHGFHPDVVS 263

Query: 238 LDVLIILYGYLAKGKDLERIWATVQEL---PNVRSKSYVLAIEAFGRIAQVSRAEELWLE 294
               I  Y      +++E ++  +QE    PNV +  Y   + A G+  Q++ A E++ +
Sbjct: 264 YSCFIAAYCEQKDFRNVEAVFDEMQEKGCKPNVIT--YTTVMHALGKARQLNEALEVYEK 321

Query: 295 MQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNG-------------------- 334
           M+    L  ++ Y+S+I V  ++G I  A  + ++M   G                    
Sbjct: 322 MKRNGCLPDSKFYSSLIYVLSQSGRIKDAWDVFEDMEKQGVCRNLWVYNTMISSACAHSQ 381

Query: 335 ---------------CKPNAITYRHLALGC 349
                          CKP+  TY  L   C
Sbjct: 382 GGSALKLLERMEGDSCKPDVKTYAPLLKMC 411


>gi|255661134|gb|ACU25736.1| pentatricopeptide repeat-containing protein [Verbena bracteata]
 gi|255661138|gb|ACU25738.1| pentatricopeptide repeat-containing protein [Verbena halei]
 gi|255661140|gb|ACU25739.1| pentatricopeptide repeat-containing protein [Verbena officinalis]
          Length = 426

 Score = 73.2 bits (178), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 74/322 (22%), Positives = 149/322 (46%), Gaps = 22/322 (6%)

Query: 98  YNNLVIACLDKGVIKLSLEYMKKM---RVLGHSISYLVFNRLIILNSSPGRRKTIPNILR 154
           Y+ L+     +G+   +L +++KM   RV G  + Y   + LI L+          +I  
Sbjct: 12  YSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLY---SNLIELSRKLCDYSKAISIFS 68

Query: 155 QMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVAR 214
           ++K     P +  ++ ++ +            + S+M+ + V PN  SY  L T +   +
Sbjct: 69  RLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTASYSTLLTMYVENK 128

Query: 215 LYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQEL---PNVRSKS 271
            +  A +    + +     + +T +++I +YG L   K+ ++++  ++++   PNV S +
Sbjct: 129 KFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYN 188

Query: 272 YVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMS 331
            +L +  +G       A  L+  MQ     +    YNS++ +Y K    +KA+ L++EM 
Sbjct: 189 TLLRV--YGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQ 246

Query: 332 MNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTL--SIIE 389
             G +PN+ITY         S ++    K  +L    +  +K+RSS   ++  L  ++I 
Sbjct: 247 NRGIEPNSITY---------STIISIWGKVGKLDRAAMLFQKLRSSGVDIDQVLYQTMIV 297

Query: 390 IFAEKGDVGNAENLFEELKKAN 411
            +   G V +A+ L  ELK+ +
Sbjct: 298 AYERAGLVAHAKRLLHELKRPD 319



 Score = 55.8 bits (133), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 76/370 (20%), Positives = 162/370 (43%), Gaps = 20/370 (5%)

Query: 65  YSYLLEFTIKNHGISQGEKLFCCIPKD-YQNELLYNNLVIACLDKG-VIKLSLEYMKKMR 122
           YS L+E + K    S+   +F  + +  +  +L+  N +I    K  + + +   + +MR
Sbjct: 47  YSNLIELSRKLCDYSKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMR 106

Query: 123 VLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIE 182
             G + +   ++ L+ +     +     ++  +M+  K    ++T +I++ +       +
Sbjct: 107 TAGVTPNTASYSTLLTMYVENKKFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAK 166

Query: 183 GLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLI 242
              K++  M++  +EPN VSY  L   +  A L+  A      +++     N  T + ++
Sbjct: 167 EADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMM 226

Query: 243 ILYGYLAKGKDLERIWATVQELPN----VRSKSYVLAIEAFGRIAQVSRAEELWLEMQSV 298
           ++YG   K  + E+    +QE+ N      S +Y   I  +G++ ++ RA  L+ +++S 
Sbjct: 227 MIYG---KTLEHEKANNLIQEMQNRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSS 283

Query: 299 KQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEG 358
                   Y ++I  Y + G +  A  LL E+      P  I    LA     +  +EE 
Sbjct: 284 GVDIDQVLYQTMIVAYERAGLVAHAKRLLHELKRPDNIPRDIAIHILA----GAGRIEE- 338

Query: 359 FKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFV 418
             A  +  + I   +V+  T +      +I +F++    GN   +F++++   Y   + V
Sbjct: 339 --ATWVFRQAIDAGEVKDITVFER----MIHLFSKYKKYGNVVEVFDKMRGLGYFPDSNV 392

Query: 419 YNTLIKAYVK 428
              ++ AY K
Sbjct: 393 IALILNAYGK 402



 Score = 41.2 bits (95), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 32/125 (25%), Positives = 56/125 (44%), Gaps = 7/125 (5%)

Query: 307 YNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGM 366
           YN++I+V+ K     +A  L+ EM   G  PN  +Y  L        +  E  K LE   
Sbjct: 82  YNAMINVFGKAKLFREARSLISEMRTAGVTPNTASYSTLL------TMYVENKKFLEALS 135

Query: 367 KLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAY 426
                ++++     L T   +I+++ + G    A+ LF  ++K         YNTL++ Y
Sbjct: 136 VFAEMREIKCLLD-LTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVY 194

Query: 427 VKAKI 431
             A++
Sbjct: 195 GDAEL 199



 Score = 40.0 bits (92), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 32/126 (25%), Positives = 58/126 (46%), Gaps = 11/126 (8%)

Query: 307 YNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGM 366
           Y+++I+ + K G  D A   L++M  +    + + Y         SNL+E   K  +   
Sbjct: 12  YSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLY---------SNLIELSRKLCDYSK 62

Query: 367 KLITTKKVRSS--TPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIK 424
            +    +++ S  TP L    ++I +F +      A +L  E++ A  T  T  Y+TL+ 
Sbjct: 63  AISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTASYSTLLT 122

Query: 425 AYVKAK 430
            YV+ K
Sbjct: 123 MYVENK 128


>gi|356538593|ref|XP_003537787.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09820-like [Glycine max]
          Length = 583

 Score = 73.2 bits (178), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 93/383 (24%), Positives = 167/383 (43%), Gaps = 26/383 (6%)

Query: 88  IPKDYQNELLYNNLVIACLDK-GVIKLSLEYMKKMRVLGHSISYLVFNRLI---ILNSSP 143
           I +  Q  L   N+ I  L K G +  + + ++ ++  G S + + +N LI       S 
Sbjct: 192 IKRRIQPNLTTFNIFINGLCKAGKLNKAEDVIEDIKAWGFSPNIVTYNTLIDGHCKKGSA 251

Query: 144 GRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSY 203
           G+      IL++M A+K+ P+  TF+ L+     D N+      + +M+R  ++PN V+Y
Sbjct: 252 GKMYRADAILKEMLANKICPNEITFNTLIDGFCKDENVLAAKNAFEEMQRQGLKPNIVTY 311

Query: 204 CILATAHAVARLYTVAETYVEALEKSMTG----NNWSTLDVLIILYGYLAKGKDLERIWA 259
             L   + ++    + E    AL   M G     N  T + LI  +      K+  +++ 
Sbjct: 312 NSL--INGLSNNGKLDEAI--ALWDKMVGLGLKPNIVTFNALINGFCKKKMIKEARKLFD 367

Query: 260 TVQE---LPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCK 316
            + E   +PN  + ++   I+AF +   +     L   M           YN +I+  C+
Sbjct: 368 DIAEQDLVPN--AITFNTMIDAFCKAGMMEEGFALHNSMLDEGIFPNVSTYNCLIAGLCR 425

Query: 317 NGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRS 376
           N  +  A  LL EM     K + +TY  L  G  K     E  KA +L  +++       
Sbjct: 426 NQNVRAAKKLLNEMENYELKADVVTYNILIGGWCKDG---EPSKAEKLLGEMLNV----G 478

Query: 377 STPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVK-AKINDPN 435
             P   T  ++++ +  +G++  A  +  +++K         YN LIK + K  K+ D N
Sbjct: 479 VKPNHVTYNTLMDGYCMEGNLKAALKVRTQMEKEGKRANVVTYNVLIKGFCKTGKLEDAN 538

Query: 436 -LLRRMILGGARPDAETYSLLKL 457
            LL  M+  G  P+  TY +++L
Sbjct: 539 RLLNEMLEKGLNPNRTTYDVVRL 561



 Score = 64.7 bits (156), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 83/377 (22%), Positives = 154/377 (40%), Gaps = 31/377 (8%)

Query: 94  NELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNIL 153
           N L+ + LV+A +    I  + E  ++++  G  +S    N L+           +  + 
Sbjct: 129 NALITDMLVLAYVTNLEIHSACEVFRRVQDYGFKLSLNSCNPLLSALVKGNETGEMQYVY 188

Query: 154 RQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVA 213
           ++M   ++ P+++TF+I +        +     V  D+K     PN V+Y  L   H   
Sbjct: 189 KEMIKRRIQPNLTTFNIFINGLCKAGKLNKAEDVIEDIKAWGFSPNIVTYNTLIDGH--C 246

Query: 214 RLYTVAETY-VEALEKSMTGN----NWSTLDVLIILYGYLAKGKDLERIWATVQEL---- 264
           +  +  + Y  +A+ K M  N    N  T + LI  +    K +++       +E+    
Sbjct: 247 KKGSAGKMYRADAILKEMLANKICPNEITFNTLIDGF---CKDENVLAAKNAFEEMQRQG 303

Query: 265 --PNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDK 322
             PN+   +Y   I       ++  A  LW +M  +        +N++I+ +CK   I +
Sbjct: 304 LKPNIV--TYNSLINGLSNNGKLDEAIALWDKMVGLGLKPNIVTFNALINGFCKKKMIKE 361

Query: 323 ASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLE 382
           A  L  +++     PNAIT+  +     K+ ++EEGF        L  +       P + 
Sbjct: 362 ARKLFDDIAEQDLVPNAITFNTMIDAFCKAGMMEEGF-------ALHNSMLDEGIFPNVS 414

Query: 383 TTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKINDPN----LLR 438
           T   +I       +V  A+ L  E++          YN LI  + K    +P+    LL 
Sbjct: 415 TYNCLIAGLCRNQNVRAAKKLLNEMENYELKADVVTYNILIGGWCKD--GEPSKAEKLLG 472

Query: 439 RMILGGARPDAETYSLL 455
            M+  G +P+  TY+ L
Sbjct: 473 EMLNVGVKPNHVTYNTL 489



 Score = 52.4 bits (124), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 74/312 (23%), Positives = 132/312 (42%), Gaps = 61/312 (19%)

Query: 94  NELLYNNLVIA-CLDKGVI--KLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIP 150
           NE+ +N L+   C D+ V+  K + E M++  +  + ++Y   N LI   S+ G+     
Sbjct: 272 NEITFNTLIDGFCKDENVLAAKNAFEEMQRQGLKPNIVTY---NSLINGLSNNGKLDEAI 328

Query: 151 NILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAH 210
            +  +M    + P++ TF+ L+        I+   K++ D+   ++ PN +++  +  A 
Sbjct: 329 ALWDKMVGLGLKPNIVTFNALINGFCKKKMIKEARKLFDDIAEQDLVPNAITFNTMIDAF 388

Query: 211 AVARLYTVAETYVEALEKSMTGN----NWSTLDVLIILYGYLAKGKDLERIWATVQELPN 266
             A +  + E +  AL  SM       N ST + LI     L + +++      + E+ N
Sbjct: 389 CKAGM--MEEGF--ALHNSMLDEGIFPNVSTYNCLI---AGLCRNQNVRAAKKLLNEMEN 441

Query: 267 VRSK----SYVLAIEAFGRIAQVSRAEELWLEMQSV-----------------------K 299
              K    +Y + I  + +  + S+AE+L  EM +V                        
Sbjct: 442 YELKADVVTYNILIGGWCKDGEPSKAEKLLGEMLNVGVKPNHVTYNTLMDGYCMEGNLKA 501

Query: 300 QLKATEQ------------YNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLAL 347
            LK   Q            YN +I  +CK G ++ A+ LL EM   G  PN  TY  + L
Sbjct: 502 ALKVRTQMEKEGKRANVVTYNVLIKGFCKTGKLEDANRLLNEMLEKGLNPNRTTYDVVRL 561

Query: 348 GCFKSNLVEEGF 359
                 ++E+GF
Sbjct: 562 -----EMLEKGF 568


>gi|224058846|ref|XP_002299640.1| predicted protein [Populus trichocarpa]
 gi|222846898|gb|EEE84445.1| predicted protein [Populus trichocarpa]
          Length = 609

 Score = 73.2 bits (178), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 80/348 (22%), Positives = 148/348 (42%), Gaps = 19/348 (5%)

Query: 114 SLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMK 173
           +L  +++M+  G + +   +  LI      GR +   ++   M  D   P V   + L+ 
Sbjct: 255 ALGLVQEMKDKGCAPTVFTYTELIKGLGKSGRVEDAYSVFLNMLKDGCKPDVVLINNLIN 314

Query: 174 IEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARL-YTVAETYVEALEKSMTG 232
           I      +E  +K++  M+  +  PN V+Y  +  A   ++   + A ++ E ++ +  G
Sbjct: 315 IFGKAGRLEDALKLFDQMRSLKCAPNVVTYNTVIKALFESKAPASEAASWFEKMKAN--G 372

Query: 233 NNWSTLDVLIILYGYLAKGKDLERIWATVQEL-----PNVRSKSYVLAIEAFGRIAQVSR 287
              S+    I++ G+  K   +E+    ++E+     P   + +Y   I A G+  +   
Sbjct: 373 VTPSSFTYSILIDGF-CKTNRVEKALLLLEEMDEKGFPPCPA-AYCSLINALGKAKRYEA 430

Query: 288 AEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLAL 347
           A EL+LE++      +   Y  +I    K G   +A  L  EM   GC P+   Y  L  
Sbjct: 431 ANELFLELKENCGRSSARIYAVMIKNLGKCGRPSEAVDLFNEMKKIGCNPDVYAYNALMS 490

Query: 348 GCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEEL 407
           G  ++ ++EE F AL        T +    TP L +   I+   A  G    A  +F ++
Sbjct: 491 GLVRAGMIEEAFSALR-------TMEENGCTPDLNSHNIILNGLARTGRPEQATEMFMKM 543

Query: 408 KKANYTKYTFVYNTLIKAYVKAKIND--PNLLRRMILGGARPDAETYS 453
           K +        YNT++ +  ++ + +    L+R M   G   D  TYS
Sbjct: 544 KDSLIKPDAVSYNTILGSLSRSGMFEEAAKLMREMGSRGFEYDHITYS 591



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 71/290 (24%), Positives = 119/290 (41%), Gaps = 25/290 (8%)

Query: 151 NILRQMKADKVAPHVSTFH--ILMKIEANDHNIEGLMKVYSDM-KRSEVEPNEVSYCILA 207
           ++  Q+K+ K  P  ST++  ILM ++   H  E + ++Y +M    +  P+ ++Y +L 
Sbjct: 152 SVFYQIKSRKCKPTASTYNSMILMLMQEGHH--EKIHELYHEMCNEGDCFPDTMTYSVLV 209

Query: 208 TAHA-VARLYTVAETYVEALEKSMTGNNW-STLDVLIILYGYLAKGKDLERIWATVQELP 265
           +A   + R     + Y   L   M  N    T  +   L     K  D E+    VQE+ 
Sbjct: 210 SAFVKLGR-----DDYAIRLFDEMKANGLHPTAKIYTTLLAIYFKSGD-EKALGLVQEMK 263

Query: 266 NVRSK----SYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFID 321
           +        +Y   I+  G+  +V  A  ++L M            N++I+++ K G ++
Sbjct: 264 DKGCAPTVFTYTELIKGLGKSGRVEDAYSVFLNMLKDGCKPDVVLINNLINIFGKAGRLE 323

Query: 322 KASGLLKEMSMNGCKPNAITYRHLALGCFKSNL-VEEGFKALELGMKLITTKKVRSSTPW 380
            A  L  +M    C PN +TY  +    F+S     E     E         K    TP 
Sbjct: 324 DALKLFDQMRSLKCAPNVVTYNTVIKALFESKAPASEAASWFE-------KMKANGVTPS 376

Query: 381 LETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAK 430
             T   +I+ F +   V  A  L EE+ +  +      Y +LI A  KAK
Sbjct: 377 SFTYSILIDGFCKTNRVEKALLLLEEMDEKGFPPCPAAYCSLINALGKAK 426


>gi|357494939|ref|XP_003617758.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355519093|gb|AET00717.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 906

 Score = 73.2 bits (178), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 87/376 (23%), Positives = 159/376 (42%), Gaps = 32/376 (8%)

Query: 94  NELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNIL 153
           N   YN L+      G ++ +L+    M+  G   + +  N +I       +     +I 
Sbjct: 411 NLTTYNILIDMLCKAGELEAALKVQDTMKEAGLFPNIMTVNIMIDRLCKAQKLDEACSIF 470

Query: 154 RQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYC-ILATAHAV 212
             +     +P   TF  L+        ++    +Y  M  S+  PN V Y  ++      
Sbjct: 471 LGLDHKVCSPDSRTFCSLIDGLGRRGRVDDAYSLYEKMLDSDQIPNVVVYTSLIQNFFKC 530

Query: 213 ARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLA---KGKDLERIWATVQEL----- 264
            R     + Y E + +  + +       L++L  Y+    K  ++E+  A  +E+     
Sbjct: 531 GRKEDGHKIYKEMVHRGCSPD-------LMLLNSYMDCVFKAGEVEKGRALFEEIKAQGL 583

Query: 265 -PNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKA 323
            P+VRS  Y + I    +        +L+ EM+          YN+VI  +CK+G +DKA
Sbjct: 584 VPDVRS--YSILIHGLVKAGFSRETYKLFYEMKEQGLHLDVLAYNTVIDGFCKSGKVDKA 641

Query: 324 SGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLET 383
             LL+EM   G +P  +TY  +  G  K + ++E +   E         + +S    L  
Sbjct: 642 YQLLEEMKTKGLQPTVVTYGSVVDGLAKIDRLDEAYMLFE---------EAKSIGVDLNV 692

Query: 384 TL--SIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKA-KINDPNL-LRR 439
            +  S+I+ F + G +  A  + EEL +   T  ++ +N L+ A VKA +I++  +  + 
Sbjct: 693 VIYSSLIDGFGKVGRIDEAYLILEELMQKGLTPNSYTWNCLLDALVKAEEIDEAQVCFQN 752

Query: 440 MILGGARPDAETYSLL 455
           M      P+A TYS++
Sbjct: 753 MKNLKCSPNAMTYSIM 768



 Score = 66.2 bits (160), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 71/342 (20%), Positives = 149/342 (43%), Gaps = 21/342 (6%)

Query: 115 LEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKI 174
           L    +M+ +G+  +  +F  L+ + +  GR     ++L +MK++     +  +++ +  
Sbjct: 223 LTLFHQMQEIGYEANVHLFTTLVRVFAREGRIDAALSLLDEMKSNSFTADLVLYNVCIDC 282

Query: 175 EANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNN 234
                 ++   K + +MK   + P++V+Y  L      AR    A    E L+ + +   
Sbjct: 283 FGKVGKVDMAWKFFHEMKAQGLVPDDVTYTTLIGVLCKARRLDEAVELFEELDLNRSVPC 342

Query: 235 WSTLDVLIILYGYLAKGKDLERIWATVQE------LPNVRSKSYVLAIEAFGRIAQVSRA 288
               + +I+ YG   K    +  ++ ++       +P+V + + +L     GR  +V  A
Sbjct: 343 VYAYNTMIMGYGSAGK---FDEAYSLLERQKRKGCIPSVIAYNCILT--CLGRKGKVEEA 397

Query: 289 EELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALG 348
             +  EM+       T  YN +I + CK G ++ A  +   M   G  PN +T   +   
Sbjct: 398 LRIHDEMRQDAAPNLT-TYNILIDMLCKAGELEAALKVQDTMKEAGLFPNIMTVNIMIDR 456

Query: 349 CFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELK 408
             K+  ++E   ++ LG+        +  +P   T  S+I+    +G V +A +L+E++ 
Sbjct: 457 LCKAQKLDEAC-SIFLGLDH------KVCSPDSRTFCSLIDGLGRRGRVDDAYSLYEKML 509

Query: 409 KANYTKYTFVYNTLIKAYVKA--KINDPNLLRRMILGGARPD 448
            ++      VY +LI+ + K   K +   + + M+  G  PD
Sbjct: 510 DSDQIPNVVVYTSLIQNFFKCGRKEDGHKIYKEMVHRGCSPD 551



 Score = 50.8 bits (120), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 71/333 (21%), Positives = 134/333 (40%), Gaps = 39/333 (11%)

Query: 131 LVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSD 190
           +V+  LI      GR++    I ++M     +P +   +  M        +E    ++ +
Sbjct: 518 VVYTSLIQNFFKCGRKEDGHKIYKEMVHRGCSPDLMLLNSYMDCVFKAGEVEKGRALFEE 577

Query: 191 MKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAK 250
           +K   + P+  SY IL   H + +     ETY    E    G +   L    ++ G+   
Sbjct: 578 IKAQGLVPDVRSYSILI--HGLVKAGFSRETYKLFYEMKEQGLHLDVLAYNTVIDGFCKS 635

Query: 251 GKDLERIWATVQEL------PNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKAT 304
           GK +++ +  ++E+      P V   +Y   ++   +I ++  A  L+ E +S+      
Sbjct: 636 GK-VDKAYQLLEEMKTKGLQPTV--VTYGSVVDGLAKIDRLDEAYMLFEEAKSIGVDLNV 692

Query: 305 EQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEG------ 358
             Y+S+I  + K G ID+A  +L+E+   G  PN+ T+  L     K+  ++E       
Sbjct: 693 VIYSSLIDGFGKVGRIDEAYLILEELMQKGLTPNSYTWNCLLDALVKAEEIDEAQVCFQN 752

Query: 359 FKALELGMKLIT-----------TKKVRSSTPWLE-----------TTLSIIEIFAEKGD 396
            K L+     +T            K  ++   W E           T  ++I   A+ G+
Sbjct: 753 MKNLKCSPNAMTYSIMINGLCMIRKFNKAFVFWQEMQKQGLKPNNITYTTMIAGLAKAGN 812

Query: 397 VGNAENLFEELKKANYTKYTFVYNTLIKAYVKA 429
           V  A  LF+  K +     +  YN +I+    A
Sbjct: 813 VMEARGLFDRFKASGGVPDSACYNAMIEGLSSA 845



 Score = 48.5 bits (114), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 60/364 (16%), Positives = 145/364 (39%), Gaps = 9/364 (2%)

Query: 94  NELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNIL 153
           N  L+  LV     +G I  +L  + +M+    +   +++N  I      G+        
Sbjct: 237 NVHLFTTLVRVFAREGRIDAALSLLDEMKSNSFTADLVLYNVCIDCFGKVGKVDMAWKFF 296

Query: 154 RQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVA 213
            +MKA  + P   T+  L+ +      ++  ++++ ++  +   P   +Y  +   +  A
Sbjct: 297 HEMKAQGLVPDDVTYTTLIGVLCKARRLDEAVELFEELDLNRSVPCVYAYNTMIMGYGSA 356

Query: 214 RLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSKSYV 273
             +  A + +E  ++     +    + ++   G   K ++  RI   +++       +Y 
Sbjct: 357 GKFDEAYSLLERQKRKGCIPSVIAYNCILTCLGRKGKVEEALRIHDEMRQDAAPNLTTYN 416

Query: 274 LAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMN 333
           + I+   +  ++  A ++   M+           N +I   CK   +D+A  +   +   
Sbjct: 417 ILIDMLCKAGELEAALKVQDTMKEAGLFPNIMTVNIMIDRLCKAQKLDEACSIFLGLDHK 476

Query: 334 GCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAE 393
            C P++ T+  L  G  +   V++ +   E   K++ + ++    P +    S+I+ F +
Sbjct: 477 VCSPDSRTFCSLIDGLGRRGRVDDAYSLYE---KMLDSDQI----PNVVVYTSLIQNFFK 529

Query: 394 KGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKINDPN--LLRRMILGGARPDAET 451
            G   +   +++E+     +    + N+ +    KA   +    L   +   G  PD  +
Sbjct: 530 CGRKEDGHKIYKEMVHRGCSPDLMLLNSYMDCVFKAGEVEKGRALFEEIKAQGLVPDVRS 589

Query: 452 YSLL 455
           YS+L
Sbjct: 590 YSIL 593



 Score = 39.7 bits (91), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 56/274 (20%), Positives = 105/274 (38%), Gaps = 44/274 (16%)

Query: 88  IPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRK 147
           +P      +L + LV A   +   KL  E    M+  G  +  L +N +I      G+  
Sbjct: 584 VPDVRSYSILIHGLVKAGFSRETYKLFYE----MKEQGLHLDVLAYNTVIDGFCKSGKVD 639

Query: 148 TIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILA 207
               +L +MK   + P V T+  ++   A    ++    ++ + K   V+ N V Y  L 
Sbjct: 640 KAYQLLEEMKTKGLQPTVVTYGSVVDGLAKIDRLDEAYMLFEEAKSIGVDLNVVIYSSLI 699

Query: 208 TAHAVARLYTVAETYV---EALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQEL 264
                 ++  + E Y+   E ++K +T N+++                     W  +   
Sbjct: 700 --DGFGKVGRIDEAYLILEELMQKGLTPNSYT---------------------WNCL--- 733

Query: 265 PNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKAS 324
                      ++A  +  ++  A+  +  M+++K       Y+ +I+  C     +KA 
Sbjct: 734 -----------LDALVKAEEIDEAQVCFQNMKNLKCSPNAMTYSIMINGLCMIRKFNKAF 782

Query: 325 GLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEG 358
              +EM   G KPN ITY  +  G  K+  V E 
Sbjct: 783 VFWQEMQKQGLKPNNITYTTMIAGLAKAGNVMEA 816


>gi|255661160|gb|ACU25749.1| pentatricopeptide repeat-containing protein [Glandularia araucana]
          Length = 426

 Score = 73.2 bits (178), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 74/322 (22%), Positives = 149/322 (46%), Gaps = 22/322 (6%)

Query: 98  YNNLVIACLDKGVIKLSLEYMKKM---RVLGHSISYLVFNRLIILNSSPGRRKTIPNILR 154
           Y+ L+     +G+   +L +++KM   RV G  + Y   + LI L+          +I  
Sbjct: 12  YSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLY---SNLIELSRKLCDYSKAISIFS 68

Query: 155 QMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVAR 214
           ++K     P +  ++ ++ +            + S+M+ + V PN  SY  L T +   +
Sbjct: 69  RLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTASYSTLLTMYVENK 128

Query: 215 LYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQEL---PNVRSKS 271
            +  A +    + +     + +T +++I +YG L   K+ ++++  ++++   PNV S +
Sbjct: 129 KFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYN 188

Query: 272 YVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMS 331
            +L +  +G       A  L+  MQ     +    YNS++ +Y K    +KA+ L++EM 
Sbjct: 189 TLLRV--YGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQ 246

Query: 332 MNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTL--SIIE 389
             G +PN+ITY         S ++    K  +L    +  +K+RSS   ++  L  ++I 
Sbjct: 247 NRGIEPNSITY---------STIISIWGKVGKLDKAAMLFQKLRSSGVDIDQVLYQTMIV 297

Query: 390 IFAEKGDVGNAENLFEELKKAN 411
            +   G V +A+ L  ELK+ +
Sbjct: 298 AYERAGLVAHAKRLLHELKRPD 319



 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 75/370 (20%), Positives = 162/370 (43%), Gaps = 20/370 (5%)

Query: 65  YSYLLEFTIKNHGISQGEKLFCCIPKD-YQNELLYNNLVIACLDKG-VIKLSLEYMKKMR 122
           YS L+E + K    S+   +F  + +  +  +L+  N +I    K  + + +   + +MR
Sbjct: 47  YSNLIELSRKLCDYSKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMR 106

Query: 123 VLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIE 182
             G + +   ++ L+ +     +     ++  +M+  K    ++T +I++ +       +
Sbjct: 107 TAGVTPNTASYSTLLTMYVENKKFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAK 166

Query: 183 GLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLI 242
              K++  M++  +EPN VSY  L   +  A L+  A      +++     N  T + ++
Sbjct: 167 EADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMM 226

Query: 243 ILYGYLAKGKDLERIWATVQELPN----VRSKSYVLAIEAFGRIAQVSRAEELWLEMQSV 298
           ++YG   K  + E+    +QE+ N      S +Y   I  +G++ ++ +A  L+ +++S 
Sbjct: 227 MIYG---KTLEHEKANNLIQEMQNRGIEPNSITYSTIISIWGKVGKLDKAAMLFQKLRSS 283

Query: 299 KQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEG 358
                   Y ++I  Y + G +  A  LL E+      P  I    LA     +  +EE 
Sbjct: 284 GVDIDQVLYQTMIVAYERAGLVAHAKRLLHELKRPDNIPRDIAIHILA----GAGRIEE- 338

Query: 359 FKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFV 418
             A  +  + I   +V+  T +      +I +F++    GN   +F++++   Y   + V
Sbjct: 339 --ATWVFRQAIDAGEVKDITVFER----MIHLFSKYKKYGNVVEVFDKMRGLGYFPESNV 392

Query: 419 YNTLIKAYVK 428
              ++ AY K
Sbjct: 393 IALVLNAYGK 402



 Score = 41.2 bits (95), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 32/125 (25%), Positives = 56/125 (44%), Gaps = 7/125 (5%)

Query: 307 YNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGM 366
           YN++I+V+ K     +A  L+ EM   G  PN  +Y  L        +  E  K LE   
Sbjct: 82  YNAMINVFGKAKLFREARSLISEMRTAGVTPNTASYSTLL------TMYVENKKFLEALS 135

Query: 367 KLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAY 426
                ++++     L T   +I+++ + G    A+ LF  ++K         YNTL++ Y
Sbjct: 136 VFAEMREIKCLLD-LTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVY 194

Query: 427 VKAKI 431
             A++
Sbjct: 195 GDAEL 199



 Score = 40.0 bits (92), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 32/126 (25%), Positives = 58/126 (46%), Gaps = 11/126 (8%)

Query: 307 YNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGM 366
           Y+++I+ + K G  D A   L++M  +    + + Y         SNL+E   K  +   
Sbjct: 12  YSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLY---------SNLIELSRKLCDYSK 62

Query: 367 KLITTKKVRSS--TPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIK 424
            +    +++ S  TP L    ++I +F +      A +L  E++ A  T  T  Y+TL+ 
Sbjct: 63  AISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTASYSTLLT 122

Query: 425 AYVKAK 430
            YV+ K
Sbjct: 123 MYVENK 128


>gi|449446624|ref|XP_004141071.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g06000-like [Cucumis sativus]
          Length = 548

 Score = 73.2 bits (178), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 60/216 (27%), Positives = 98/216 (45%), Gaps = 31/216 (14%)

Query: 271 SYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATE-QYNSVISVYCKNGFIDKASGLLKE 329
           SY   I  F R+ ++S+  +L  E   +K +      Y S+IS YCK G +  AS L  E
Sbjct: 251 SYNTLINGFCRVNEISKGHDLLKEDMLIKGVSPDVITYTSIISGYCKLGDMKAASELFDE 310

Query: 330 MSMNGCKPNAITY---------------------RHLALGCFK-----SNLVEEGFKALE 363
           M  +G KPN  T+                     + L LGC       ++L++   +  E
Sbjct: 311 MVSSGIKPNDFTFNVLIDGFGKVGNMRSAMVMYEKMLLLGCLPDVVTFTSLIDGYCREGE 370

Query: 364 L--GMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNT 421
           +  G+KL    KVR+ +P + T   +I    ++  +  A N    LK +      F+YN 
Sbjct: 371 VNQGLKLWEEMKVRNLSPNVYTYAVLINALCKENRIREARNFLRHLKSSEVVPKPFIYNP 430

Query: 422 LIKAYVKA-KINDPN-LLRRMILGGARPDAETYSLL 455
           +I  + KA K+++ N ++  M     RPD  T+++L
Sbjct: 431 VIDGFCKAGKVDEANFIVAEMQEKKCRPDKITFTIL 466



 Score = 61.2 bits (147), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 78/340 (22%), Positives = 149/340 (43%), Gaps = 29/340 (8%)

Query: 32  SINRLRKLQLNKRAL-EVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQGEKLF----- 85
           S  R+ KL   K  L EV  + I+  P+      Y+ LL   +K + + +   LF     
Sbjct: 153 SYARMGKLDSAKNFLNEVHCYGIKVSPFV-----YNNLLNMLVKQNLVDEAVLLFREHLE 207

Query: 86  -CCIPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPG 144
              +P  Y     +N L+      G I  + E+ + M   G     + +N LI       
Sbjct: 208 PYFVPDVYS----FNILIRGLCRIGEIDKAFEFFQNMGNFGCFPDIVSYNTLINGFCRVN 263

Query: 145 RRKTIPNILRQ-MKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSY 203
                 ++L++ M    V+P V T+  ++       +++   +++ +M  S ++PN+ ++
Sbjct: 264 EISKGHDLLKEDMLIKGVSPDVITYTSIISGYCKLGDMKAASELFDEMVSSGIKPNDFTF 323

Query: 204 CILATAHA-VARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLE--RIW-- 258
            +L      V  + +    Y + L   + G     +    ++ GY  +G+  +  ++W  
Sbjct: 324 NVLIDGFGKVGNMRSAMVMYEKML---LLGCLPDVVTFTSLIDGYCREGEVNQGLKLWEE 380

Query: 259 ATVQEL-PNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKN 317
             V+ L PNV +  Y + I A  +  ++  A      ++S + +     YN VI  +CK 
Sbjct: 381 MKVRNLSPNVYT--YAVLINALCKENRIREARNFLRHLKSSEVVPKPFIYNPVIDGFCKA 438

Query: 318 GFIDKASGLLKEMSMNGCKPNAITYRHLALG-CFKSNLVE 356
           G +D+A+ ++ EM    C+P+ IT+  L +G C K  +VE
Sbjct: 439 GKVDEANFIVAEMQEKKCRPDKITFTILIIGNCMKGRMVE 478


>gi|255661146|gb|ACU25742.1| pentatricopeptide repeat-containing protein [Verbena hispida]
          Length = 426

 Score = 73.2 bits (178), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 74/322 (22%), Positives = 149/322 (46%), Gaps = 22/322 (6%)

Query: 98  YNNLVIACLDKGVIKLSLEYMKKM---RVLGHSISYLVFNRLIILNSSPGRRKTIPNILR 154
           Y+ L+     +G+   +L +++KM   RV G  + Y   + LI L+          +I  
Sbjct: 12  YSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLY---SNLIELSRKLCDYSKAISIFS 68

Query: 155 QMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVAR 214
           ++K     P +  ++ ++ +            + S+M+ + V PN  SY  L T +   +
Sbjct: 69  RLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTASYSTLLTMYVENK 128

Query: 215 LYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQEL---PNVRSKS 271
            +  A +    + +     + +T +++I +YG L   K+ ++++  ++++   PNV S +
Sbjct: 129 KFLEALSIFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYN 188

Query: 272 YVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMS 331
            +L +  +G       A  L+  MQ     +    YNS++ +Y K    +KA+ L++EM 
Sbjct: 189 TLLRV--YGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQ 246

Query: 332 MNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTL--SIIE 389
             G +PN+ITY         S ++    K  +L    +  +K+RSS   ++  L  ++I 
Sbjct: 247 NRGIEPNSITY---------STIISIWGKVGKLDRAAMLFQKLRSSGVDIDQVLYQTMIV 297

Query: 390 IFAEKGDVGNAENLFEELKKAN 411
            +   G V +A+ L  ELK+ +
Sbjct: 298 AYERAGLVAHAKRLLHELKRPD 319



 Score = 55.1 bits (131), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 77/370 (20%), Positives = 161/370 (43%), Gaps = 20/370 (5%)

Query: 65  YSYLLEFTIKNHGISQGEKLFCCIPKD-YQNELLYNNLVIACLDKG-VIKLSLEYMKKMR 122
           YS L+E + K    S+   +F  + +  +  +L+  N +I    K  + + +   + +MR
Sbjct: 47  YSNLIELSRKLCDYSKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMR 106

Query: 123 VLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIE 182
             G + +   ++ L+ +     +     +I  +M+  K    ++T +I++ +       +
Sbjct: 107 TAGVTPNTASYSTLLTMYVENKKFLEALSIFAEMREIKCLLDLTTCNIMIDVYGQLGMAK 166

Query: 183 GLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLI 242
              K++  M++  +EPN VSY  L   +  A L+  A      +++     N  T + ++
Sbjct: 167 EADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMM 226

Query: 243 ILYGYLAKGKDLERIWATVQELPN----VRSKSYVLAIEAFGRIAQVSRAEELWLEMQSV 298
           ++YG   K  + E+    +QE+ N      S +Y   I  +G++ ++ RA  L+ +++S 
Sbjct: 227 MIYG---KTLEHEKANNLIQEMQNRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSS 283

Query: 299 KQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEG 358
                   Y ++I  Y + G +  A  LL E+      P  I    LA     +  +EE 
Sbjct: 284 GVDIDQVLYQTMIVAYERAGLVAHAKRLLHELKRPDNIPRDIAIHILA----GAGRIEE- 338

Query: 359 FKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFV 418
             A  +  + I   +V+  T +      +I +F++    GN   +F +++   Y   + V
Sbjct: 339 --ATWVFRQAIDAGEVKDITVFER----MIHLFSKYKKYGNVVEVFNKMRGLGYFPDSNV 392

Query: 419 YNTLIKAYVK 428
              ++ AY K
Sbjct: 393 IALVLNAYGK 402



 Score = 41.2 bits (95), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 33/125 (26%), Positives = 60/125 (48%), Gaps = 7/125 (5%)

Query: 307 YNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGM 366
           YN++I+V+ K     +A  L+ EM   G  PN  +Y  L L  +  N  ++  +AL +  
Sbjct: 82  YNAMINVFGKAKLFREARSLISEMRTAGVTPNTASYSTL-LTMYVEN--KKFLEALSIFA 138

Query: 367 KLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAY 426
           ++   K +      L T   +I+++ + G    A+ LF  ++K         YNTL++ Y
Sbjct: 139 EMREIKCLLD----LTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVY 194

Query: 427 VKAKI 431
             A++
Sbjct: 195 GDAEL 199



 Score = 40.0 bits (92), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 32/126 (25%), Positives = 58/126 (46%), Gaps = 11/126 (8%)

Query: 307 YNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGM 366
           Y+++I+ + K G  D A   L++M  +    + + Y         SNL+E   K  +   
Sbjct: 12  YSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLY---------SNLIELSRKLCDYSK 62

Query: 367 KLITTKKVRSS--TPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIK 424
            +    +++ S  TP L    ++I +F +      A +L  E++ A  T  T  Y+TL+ 
Sbjct: 63  AISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTASYSTLLT 122

Query: 425 AYVKAK 430
            YV+ K
Sbjct: 123 MYVENK 128


>gi|356564752|ref|XP_003550612.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g06000-like [Glycine max]
          Length = 544

 Score = 73.2 bits (178), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 73/347 (21%), Positives = 138/347 (39%), Gaps = 43/347 (12%)

Query: 111 IKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHI 170
             +S E + + +  G  +  +V+N  + +     R      + R++          TF+I
Sbjct: 159 FDVSKELLAEAQCSGVQVDVIVYNNFLNILIKHNRLDDAICLFRELMRSHSCLDAFTFNI 218

Query: 171 LMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSM 230
           L++      +++   ++  DM      P+ V+Y IL   H + R+  V            
Sbjct: 219 LIRGLCTAGDVDEAFELLGDMGSFGCSPDIVTYNILL--HGLCRIDQVD----------- 265

Query: 231 TGNNWSTLDVLIILYGYLAKGKDL-ERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAE 289
                              + +DL E +    +  PNV   SY   I  + R++++  A 
Sbjct: 266 -------------------RARDLLEEVCLKCEFAPNV--VSYTTVISGYCRLSKMDEAS 304

Query: 290 ELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGC 349
            L+ EM           +++++  + K G +  A G+ K++  +GC PN IT   L  G 
Sbjct: 305 SLFYEMVRSGTKPNVFTFSALVDGFVKAGDMASALGMHKKILFHGCAPNVITLTSLINGY 364

Query: 350 FKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKK 409
            ++  V  G       + L      R+    L T   +I    +   +  A NL   LK+
Sbjct: 365 CRAGWVNHG-------LDLWREMNARNIPANLYTYSVLISALCKSNRLQEARNLLRILKQ 417

Query: 410 ANYTKYTFVYNTLIKAYVKA-KINDPNLLRRMILGGARPDAETYSLL 455
           ++     FVYN +I  Y K+  I++ N +   +    +PD  T+++L
Sbjct: 418 SDIVPLAFVYNPVIDGYCKSGNIDEANAIVAEMEEKCKPDKLTFTIL 464



 Score = 49.3 bits (116), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 66/304 (21%), Positives = 121/304 (39%), Gaps = 49/304 (16%)

Query: 96  LLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQ 155
           ++YNN +   +    +  ++   +++      +    FN LI    + G       +L  
Sbjct: 179 IVYNNFLNILIKHNRLDDAICLFRELMRSHSCLDAFTFNILIRGLCTAGDVDEAFELLGD 238

Query: 156 MKADKVAPHVSTFHILM----KIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHA 211
           M +   +P + T++IL+    +I+  D   + L +V     + E  PN VSY  + + + 
Sbjct: 239 MGSFGCSPDIVTYNILLHGLCRIDQVDRARDLLEEV---CLKCEFAPNVVSYTTVISGYC 295

Query: 212 VARLYTVAETYVEALEKSMTGNNWSTLDVLI---ILYGYLAKGKDLERIWATVQELPNVR 268
                  A +    + +S T  N  T   L+   +  G +A    + +        PNV 
Sbjct: 296 RLSKMDEASSLFYEMVRSGTKPNVFTFSALVDGFVKAGDMASALGMHKKILFHGCAPNVI 355

Query: 269 SKSYVLAIEAFGRIAQVSRAEELWLEMQS-----------------------------VK 299
           + + +  I  + R   V+   +LW EM +                             ++
Sbjct: 356 TLTSL--INGYCRAGWVNHGLDLWREMNARNIPANLYTYSVLISALCKSNRLQEARNLLR 413

Query: 300 QLKATE------QYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALG-CFKS 352
            LK ++       YN VI  YCK+G ID+A+ ++ EM    CKP+ +T+  L +G C K 
Sbjct: 414 ILKQSDIVPLAFVYNPVIDGYCKSGNIDEANAIVAEME-EKCKPDKLTFTILIIGHCMKG 472

Query: 353 NLVE 356
              E
Sbjct: 473 RTPE 476


>gi|326499175|dbj|BAK06078.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 566

 Score = 73.2 bits (178), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 75/277 (27%), Positives = 127/277 (45%), Gaps = 19/277 (6%)

Query: 92  YQNELLYNNLVIACLDK-GVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIP 150
           Y  ++   N+VI  + K G ++ +LE +++M   G S   +  N   IL +   R K + 
Sbjct: 230 YSPDVWSFNVVIKGVCKVGDVQKALELVERMDEFGCSPDTVTHN---ILVNGLCRAKEVS 286

Query: 151 N---ILRQMKADKVA-PHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCIL 206
               +LR+++ D V  P+V T+  ++        +E  M VY+DM      PN V+Y +L
Sbjct: 287 KGREVLRRLQRDGVCMPNVVTYTSVISGYCKAGRMEDAMAVYNDMVAVGTSPNVVTYNVL 346

Query: 207 ATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQEL-- 264
              +  A     A    + +       +  T   LI  Y    +  D  +IW  + +   
Sbjct: 347 INGYGKAGNMGSAVAVYQQMILRRCLPDVVTFSSLIDGYCRCGQLDDAMKIWTEMAQYHI 406

Query: 265 -PNVRSKSYVLAIEAFGRIAQVSRAEEL-WLEMQSVKQLKATEQ--YNSVISVYCKNGFI 320
            PN  + ++ + I  F +  Q    E L +L+  +++   A +   YN VI V CK G +
Sbjct: 407 QPN--AHTFCIIIHTFCK--QNRSGEALHFLKKMNMRTDIAPQAFIYNPVIDVLCKGGKV 462

Query: 321 DKASGLLKEMSMNGCKPNAITYRHLALG-CFKSNLVE 356
           D+A+ +L EM   GC+P+  TY  L +G C K  + E
Sbjct: 463 DEANMILIEMEEKGCRPDKYTYTILIIGHCMKGRIAE 499



 Score = 62.4 bits (150), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 70/351 (19%), Positives = 142/351 (40%), Gaps = 46/351 (13%)

Query: 119 KKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQ-MKADKVAPHVSTFHILMKIEAN 177
            K    G SI    +N+L+ L    GR +    +    ++    +P V +F++++K    
Sbjct: 187 SKASQFGCSIEAYAYNKLMDLFIGHGRVQDAVALFEGWIQGGVYSPDVWSFNVVIKGVCK 246

Query: 178 DHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWST 237
             +++  +++   M      P+ V++ IL      A+                       
Sbjct: 247 VGDVQKALELVERMDEFGCSPDTVTHNILVNGLCRAK----------------------- 283

Query: 238 LDVLIILYGYLAKGKD-LERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQ 296
                     ++KG++ L R+      +PNV   +Y   I  + +  ++  A  ++ +M 
Sbjct: 284 ---------EVSKGREVLRRLQRDGVCMPNV--VTYTSVISGYCKAGRMEDAMAVYNDMV 332

Query: 297 SVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVE 356
           +V        YN +I+ Y K G +  A  + ++M +  C P+ +T+  L  G  +   ++
Sbjct: 333 AVGTSPNVVTYNVLINGYGKAGNMGSAVAVYQQMILRRCLPDVVTFSSLIDGYCRCGQLD 392

Query: 357 EGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELK-KANYTKY 415
           +        MK+ T        P   T   II  F ++   G A +  +++  + +    
Sbjct: 393 D-------AMKIWTEMAQYHIQPNAHTFCIIIHTFCKQNRSGEALHFLKKMNMRTDIAPQ 445

Query: 416 TFVYNTLIKAYVK-AKINDPNL-LRRMILGGARPDAETYSLLKLAEQFQKK 464
            F+YN +I    K  K+++ N+ L  M   G RPD  TY++L +    + +
Sbjct: 446 AFIYNPVIDVLCKGGKVDEANMILIEMEEKGCRPDKYTYTILIIGHCMKGR 496


>gi|255661168|gb|ACU25753.1| pentatricopeptide repeat-containing protein [Glandularia incisa]
          Length = 352

 Score = 73.2 bits (178), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 74/322 (22%), Positives = 149/322 (46%), Gaps = 22/322 (6%)

Query: 98  YNNLVIACLDKGVIKLSLEYMKKM---RVLGHSISYLVFNRLIILNSSPGRRKTIPNILR 154
           Y+ L+     +G+   +L +++KM   RV G  + Y   + LI L+          +I  
Sbjct: 12  YSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLY---SNLIELSRKLCDYSKAISIFS 68

Query: 155 QMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVAR 214
           ++K     P +  ++ ++ +            + S+M+ + V PN  SY  L T +   +
Sbjct: 69  RLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTTSYSTLLTMYVENK 128

Query: 215 LYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQEL---PNVRSKS 271
            +  A +    + +     + +T +++I +YG L   K+ ++++  ++++   PNV S +
Sbjct: 129 KFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYN 188

Query: 272 YVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMS 331
            +L +  +G       A  L+  MQ     +    YNS++ +Y K    +KA+ L++EM 
Sbjct: 189 TLLRV--YGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQ 246

Query: 332 MNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTL--SIIE 389
             G +PN+ITY         S ++    K  +L    +  +K+RSS   ++  L  ++I 
Sbjct: 247 NRGIEPNSITY---------STIISIWGKVGKLDRAAMLFQKLRSSGVDIDQVLYQTMIV 297

Query: 390 IFAEKGDVGNAENLFEELKKAN 411
            +   G V +A+ L  ELK+ +
Sbjct: 298 AYERAGLVAHAKRLLHELKRPD 319



 Score = 42.0 bits (97), Expect = 0.62,   Method: Compositional matrix adjust.
 Identities = 32/125 (25%), Positives = 56/125 (44%), Gaps = 7/125 (5%)

Query: 307 YNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGM 366
           YN++I+V+ K     +A  L+ EM   G  PN  +Y  L        +  E  K LE   
Sbjct: 82  YNAMINVFGKAKLFREARSLISEMRTAGVTPNTTSYSTLL------TMYVENKKFLEALS 135

Query: 367 KLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAY 426
                ++++     L T   +I+++ + G    A+ LF  ++K         YNTL++ Y
Sbjct: 136 VFAEMREIKCLLD-LTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVY 194

Query: 427 VKAKI 431
             A++
Sbjct: 195 GDAEL 199



 Score = 40.8 bits (94), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 32/126 (25%), Positives = 58/126 (46%), Gaps = 11/126 (8%)

Query: 307 YNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGM 366
           Y+++I+ + K G  D A   L++M  +    + + Y         SNL+E   K  +   
Sbjct: 12  YSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLY---------SNLIELSRKLCDYSK 62

Query: 367 KLITTKKVRSS--TPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIK 424
            +    +++ S  TP L    ++I +F +      A +L  E++ A  T  T  Y+TL+ 
Sbjct: 63  AISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTTSYSTLLT 122

Query: 425 AYVKAK 430
            YV+ K
Sbjct: 123 MYVENK 128


>gi|449488099|ref|XP_004157939.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g06000-like [Cucumis sativus]
          Length = 548

 Score = 73.2 bits (178), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 60/216 (27%), Positives = 98/216 (45%), Gaps = 31/216 (14%)

Query: 271 SYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATE-QYNSVISVYCKNGFIDKASGLLKE 329
           SY   I  F R+ ++S+  +L  E   +K +      Y S+IS YCK G +  AS L  E
Sbjct: 251 SYNTLINGFCRVNEISKGHDLLKEDMLIKGVSPDVITYTSIISGYCKLGDMKAASELFDE 310

Query: 330 MSMNGCKPNAITY---------------------RHLALGCFK-----SNLVEEGFKALE 363
           M  +G KPN  T+                     + L LGC       ++L++   +  E
Sbjct: 311 MVSSGIKPNDFTFNVLIDGFGKVGNMRSAMVMYEKMLLLGCLPDVVTFTSLIDGYCREGE 370

Query: 364 L--GMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNT 421
           +  G+KL    KVR+ +P + T   +I    ++  +  A N    LK +      F+YN 
Sbjct: 371 VNQGLKLWEEMKVRNLSPNVYTYAVLINALCKENRIREARNFLRHLKSSEVVPKPFIYNP 430

Query: 422 LIKAYVKA-KINDPN-LLRRMILGGARPDAETYSLL 455
           +I  + KA K+++ N ++  M     RPD  T+++L
Sbjct: 431 VIDGFCKAGKVDEANFIVAEMQEKKCRPDKITFTIL 466



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 78/340 (22%), Positives = 149/340 (43%), Gaps = 29/340 (8%)

Query: 32  SINRLRKLQLNKRAL-EVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQGEKLF----- 85
           S  R+ KL   K  L EV  + I+  P+      Y+ LL   +K + + +   LF     
Sbjct: 153 SYARMGKLDSAKNFLNEVHCYGIKVSPFV-----YNNLLNMLVKQNLVDEAVLLFREHLE 207

Query: 86  -CCIPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPG 144
              +P  Y     +N L+      G I  + E+ + M   G     + +N LI       
Sbjct: 208 PYFVPDVYS----FNILIRGLCRIGEIDKAFEFFQNMGNFGCFPDIVSYNTLINGFCRVN 263

Query: 145 RRKTIPNILRQ-MKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSY 203
                 ++L++ M    V+P V T+  ++       +++   +++ +M  S ++PN+ ++
Sbjct: 264 EISKGHDLLKEDMLIKGVSPDVITYTSIISGYCKLGDMKAASELFDEMVSSGIKPNDFTF 323

Query: 204 CILATAHA-VARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLE--RIW-- 258
            +L      V  + +    Y + L   + G     +    ++ GY  +G+  +  ++W  
Sbjct: 324 NVLIDGFGKVGNMRSAMVMYEKML---LLGCLPDVVTFTSLIDGYCREGEVNQGLKLWEE 380

Query: 259 ATVQEL-PNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKN 317
             V+ L PNV +  Y + I A  +  ++  A      ++S + +     YN VI  +CK 
Sbjct: 381 MKVRNLSPNVYT--YAVLINALCKENRIREARNFLRHLKSSEVVPKPFIYNPVIDGFCKA 438

Query: 318 GFIDKASGLLKEMSMNGCKPNAITYRHLALG-CFKSNLVE 356
           G +D+A+ ++ EM    C+P+ IT+  L +G C K  +VE
Sbjct: 439 GKVDEANFIVAEMQEKKCRPDKITFTILIIGNCMKGRMVE 478


>gi|356522850|ref|XP_003530056.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
           mitochondrial-like [Glycine max]
          Length = 545

 Score = 73.2 bits (178), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 94/389 (24%), Positives = 153/389 (39%), Gaps = 47/389 (12%)

Query: 105 CLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPH 164
           CL KG +K +L +  K+   G  +  + +  LI      G  +    +LR++      P+
Sbjct: 144 CL-KGQVKKALHFHDKLLAQGFRLDQVSYGTLINGVCKIGETRAAIQLLRRIDGRLTEPN 202

Query: 165 VSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSY-------CILA---------- 207
           V  ++ ++        +     ++S+M    +  N V+Y       CI+           
Sbjct: 203 VVMYNTIIDCLCKRKLVSEACNLFSEMSVKGISANVVTYSAIIHGFCIVGKLTEALGFLN 262

Query: 208 --TAHAVARLYTVAETYVEALEKSMTGNNWSTLDVL-----------IILYGYLAKG--K 252
                A+     +  T V+AL K   G      +VL           +I Y  L  G  K
Sbjct: 263 EMVLKAINPDVYIYNTLVDALHKE--GKVKEAKNVLAVIVKTCLKPNVITYNTLIDGYAK 320

Query: 253 DLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVIS 312
            +      +   P+V   SY + I    +I +V  A  L+ EM     +  T  YNS+I 
Sbjct: 321 HVFNAVGLMGVTPDVW--SYNIMINRLCKIKRVEEALNLYKEMHQKNMVPNTVTYNSLID 378

Query: 313 VYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTK 372
             CK+G I  A  L+ EM   G   N ITY  L  G  K+         L+  + LI   
Sbjct: 379 GLCKSGRISYAWDLIDEMHDRGHHANVITYNSLINGLCKNG-------QLDKAIALINKM 431

Query: 373 KVRSSTPWLETTLSIIEIFAEKGD-VGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKI 431
           K +   P + T   ++     KG  + NA+ LF++L    Y    + YN +I  + K  +
Sbjct: 432 KDQGIQPDMYTLNILLHGLLCKGKRLKNAQGLFQDLLDKGYHPNVYTYNIIIYGHCKEGL 491

Query: 432 NDP--NLLRRMILGGARPDAETYSLLKLA 458
            D    L  +M   G  P+A T+ ++  A
Sbjct: 492 LDEAYALQSKMEDSGCSPNAITFKIIICA 520



 Score = 58.2 bits (139), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 59/252 (23%), Positives = 110/252 (43%), Gaps = 16/252 (6%)

Query: 97  LYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQM 156
           +YN LV A   +G +K +   +  +       + + +N LI      G  K + N +  M
Sbjct: 275 IYNTLVDALHKEGKVKEAKNVLAVIVKTCLKPNVITYNTLI-----DGYAKHVFNAVGLM 329

Query: 157 KADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLY 216
               V P V +++I++        +E  + +Y +M +  + PN V+Y  L      +   
Sbjct: 330 G---VTPDVWSYNIMINRLCKIKRVEEALNLYKEMHQKNMVPNTVTYNSLIDGLCKSGRI 386

Query: 217 TVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPN--VRSKSYVL 274
           + A   ++ +       N  T + LI     L K   L++  A + ++ +  ++   Y L
Sbjct: 387 SYAWDLIDEMHDRGHHANVITYNSLI---NGLCKNGQLDKAIALINKMKDQGIQPDMYTL 443

Query: 275 AIEAFGRIAQVSR---AEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMS 331
            I   G + +  R   A+ L+ ++           YN +I  +CK G +D+A  L  +M 
Sbjct: 444 NILLHGLLCKGKRLKNAQGLFQDLLDKGYHPNVYTYNIIIYGHCKEGLLDEAYALQSKME 503

Query: 332 MNGCKPNAITYR 343
            +GC PNAIT++
Sbjct: 504 DSGCSPNAITFK 515


>gi|242067341|ref|XP_002448947.1| hypothetical protein SORBIDRAFT_05g002250 [Sorghum bicolor]
 gi|241934790|gb|EES07935.1| hypothetical protein SORBIDRAFT_05g002250 [Sorghum bicolor]
          Length = 797

 Score = 73.2 bits (178), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 94/406 (23%), Positives = 166/406 (40%), Gaps = 20/406 (4%)

Query: 59  RPKELDYSYLLEFTIKNHGISQGEKLF-CCIPKDYQ-NELLYNNLVIACLDKGVIKLSLE 116
           +P    Y  LL +   N    +    F   I K  + N  +Y  L+     KG +    +
Sbjct: 305 KPDCYTYGSLLNYLCNNGRCREARFFFDSMIRKGIKPNVAIYGILIHGYATKGALSEMHD 364

Query: 117 YMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEA 176
            +  M   G S  + +FN +    +         +I  +MK   ++P V  F  L+    
Sbjct: 365 LLNLMVENGLSPDHHIFNIIFTAYAKKAMIDEAMHIFNKMKQQGLSPDVVNFGALIDALC 424

Query: 177 NDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVA-ETYVEALEKSMTGN-- 233
               ++  +  ++ M    V PN   +  L         +  A E Y E L + +  +  
Sbjct: 425 KLGRVDDAVLKFNQMMNEGVAPNIFVFNSLVYGLCTVDKWEKAKEFYFEMLNQGIRPDVV 484

Query: 234 NWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSKSYVLAIEAF-GRIAQVSRAEELW 292
            ++T+   +   G + K + L  +   V   P+V S + ++      GRI + +++ ++ 
Sbjct: 485 FFNTILCNLCTKGQVMKAQRLIDLMERVGTRPDVISYTTLIGGHCLVGRIDEAAKSLDVM 544

Query: 293 LEMQSVKQLKATE-QYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFK 351
           L +     LK  E  YN+++  YC+ G ID A G+ +EM  NG  P  +TY  +  G F 
Sbjct: 545 LSVG----LKPDEWTYNTLLHGYCRAGRIDDAYGVFREMLRNGITPGVVTYSTILHGLFT 600

Query: 352 SNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKAN 411
           +    E   A EL + +IT+ K      W+     I+   ++   V  A  LF+ L   +
Sbjct: 601 TRRFSE---AKELYLNMITSGK--QWNIWIYNI--ILNGLSKNNCVDEAFKLFQSLCSKD 653

Query: 412 YTKYTFVYNTLIKAYVKAKINDP--NLLRRMILGGARPDAETYSLL 455
           +      +N +I A  K+  N+   +L   +   G  PD  TY L+
Sbjct: 654 FQLEITTFNIMIGALFKSGRNEDAMHLFATISSYGLVPDVFTYCLI 699



 Score = 60.8 bits (146), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 41/132 (31%), Positives = 64/132 (48%), Gaps = 6/132 (4%)

Query: 326 LLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTL 385
           L+K M   GC P+ ++Y  L  G       EE   ALEL + ++   + RS  P + +  
Sbjct: 152 LIKRMPELGCTPDVVSYNTLLKGFCNEKRAEE---ALEL-LHMMADSQGRSCPPNVVSYA 207

Query: 386 SIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKIND--PNLLRRMILG 443
           ++I  F  +G V  A NLF E+           Y T+I    KA++ D    + ++MI  
Sbjct: 208 TVINGFFTEGQVDKAYNLFLEMMDRGIQPNVVTYTTVIDGLCKAQVVDRAEGVFQQMIDK 267

Query: 444 GARPDAETYSLL 455
           G +PD +TY+ L
Sbjct: 268 GVKPDNDTYNCL 279



 Score = 57.4 bits (137), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 51/196 (26%), Positives = 77/196 (39%), Gaps = 11/196 (5%)

Query: 265 PNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKAS 324
           PNV   SY   I  F    QV +A  L+LEM           Y +VI   CK   +D+A 
Sbjct: 201 PNV--VSYATVINGFFTEGQVDKAYNLFLEMMDRGIQPNVVTYTTVIDGLCKAQVVDRAE 258

Query: 325 GLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETT 384
           G+ ++M   G KP+  TY  L  G       +E  + LE               P   T 
Sbjct: 259 GVFQQMIDKGVKPDNDTYNCLIHGYLSIGKWKEVVRMLE-------EMSAHGLKPDCYTY 311

Query: 385 LSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAY-VKAKIND-PNLLRRMIL 442
            S++      G    A   F+ + +        +Y  LI  Y  K  +++  +LL  M+ 
Sbjct: 312 GSLLNYLCNNGRCREARFFFDSMIRKGIKPNVAIYGILIHGYATKGALSEMHDLLNLMVE 371

Query: 443 GGARPDAETYSLLKLA 458
            G  PD   ++++  A
Sbjct: 372 NGLSPDHHIFNIIFTA 387



 Score = 44.7 bits (104), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 68/319 (21%), Positives = 119/319 (37%), Gaps = 43/319 (13%)

Query: 96  LLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQ 155
           + +N ++     KG +  +   +  M  +G     + +  LI  +   GR       L  
Sbjct: 484 VFFNTILCNLCTKGQVMKAQRLIDLMERVGTRPDVISYTTLIGGHCLVGRIDEAAKSLDV 543

Query: 156 MKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSY-CILATAHAVAR 214
           M +  + P   T++ L+        I+    V+ +M R+ + P  V+Y  IL       R
Sbjct: 544 MLSVGLKPDEWTYNTLLHGYCRAGRIDDAYGVFREMLRNGITPGVVTYSTILHGLFTTRR 603

Query: 215 LYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSKSYVL 274
                E Y+  +    +G  W+     IIL G L+K   ++  +   Q L    SK + L
Sbjct: 604 FSEAKELYLNMIT---SGKQWNIWIYNIILNG-LSKNNCVDEAFKLFQSLC---SKDFQL 656

Query: 275 AIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNG 334
            I  F                            N +I    K+G  + A  L   +S  G
Sbjct: 657 EITTF----------------------------NIMIGALFKSGRNEDAMHLFATISSYG 688

Query: 335 CKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEK 394
             P+  TY  +A      NL+EEG+  LE    L +  +   +TP      +++     +
Sbjct: 689 LVPDVFTYCLIA-----ENLIEEGY--LEEFDDLFSAMEKSGTTPNSRMLNALVRRLLHR 741

Query: 395 GDVGNAENLFEELKKANYT 413
           GD+  A     +L + N++
Sbjct: 742 GDITRAGAYLSKLDEKNFS 760



 Score = 44.3 bits (103), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 82/406 (20%), Positives = 156/406 (38%), Gaps = 53/406 (13%)

Query: 60  PKELDYSYLLEFTIKNHGISQGEKLFCCIPKD--YQNELLYNNLVIACLDKGVIKLSLEY 117
           P    YS L+    +   +  G   F  I K     N ++ N L+    D   ++ +++ 
Sbjct: 92  PDLCTYSILIGCFCRMGRLEHGFATFGLILKSGWRVNNIVINQLLKGLCDAKRLREAMDI 151

Query: 118 M-KKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQM---KADKVAPHVSTFHILMK 173
           + K+M  LG +   + +N L+    +  R +    +L  M   +     P+V ++  ++ 
Sbjct: 152 LIKRMPELGCTPDVVSYNTLLKGFCNEKRAEEALELLHMMADSQGRSCPPNVVSYATVIN 211

Query: 174 IEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAE-TYVEALEKSMTG 232
               +  ++    ++ +M    ++PN V+Y  +      A++   AE  + + ++K +  
Sbjct: 212 GFFTEGQVDKAYNLFLEMMDRGIQPNVVTYTTVIDGLCKAQVVDRAEGVFQQMIDKGVKP 271

Query: 233 NNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELW 292
           +N  T + LI  +GYL+ GK     W  V  +                            
Sbjct: 272 DN-DTYNCLI--HGYLSIGK-----WKEVVRM---------------------------- 295

Query: 293 LEMQSVKQLKA-TEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFK 351
           LE  S   LK     Y S+++  C NG   +A      M   G KPN   Y  L  G   
Sbjct: 296 LEEMSAHGLKPDCYTYGSLLNYLCNNGRCREARFFFDSMIRKGIKPNVAIYGILIHGYAT 355

Query: 352 SNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKAN 411
              + E    L L ++          +P       I   +A+K  +  A ++F ++K+  
Sbjct: 356 KGALSEMHDLLNLMVE-------NGLSPDHHIFNIIFTAYAKKAMIDEAMHIFNKMKQQG 408

Query: 412 YTKYTFVYNTLIKAYVK-AKINDPNL-LRRMILGGARPDAETYSLL 455
            +     +  LI A  K  +++D  L   +M+  G  P+   ++ L
Sbjct: 409 LSPDVVNFGALIDALCKLGRVDDAVLKFNQMMNEGVAPNIFVFNSL 454


>gi|410110135|gb|AFV61147.1| pentatricopeptide repeat-containing protein 123, partial [Lippia
           rotundifolia]
          Length = 440

 Score = 73.2 bits (178), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 75/341 (21%), Positives = 153/341 (44%), Gaps = 20/341 (5%)

Query: 76  HGISQGEKLFCCIPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNR 135
           HG+    +     P  Y     Y+ L+     +G+   +L +++KM         ++++ 
Sbjct: 1   HGLFDEMRQRALSPDRYT----YSTLITHFGKEGLFDAALSWLQKMEQDQVPGDLVLYSN 56

Query: 136 LIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSE 195
           LI L+          +I  ++K     P +  ++ ++ +            + S+MK + 
Sbjct: 57  LIELSRKLCDYSKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMKTAG 116

Query: 196 VEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLE 255
           V PN  SY  L T +   + +  A +    + +     + +T +++I +YG L   K+ +
Sbjct: 117 VMPNTTSYSTLLTMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEAD 176

Query: 256 RIWATVQEL---PNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVIS 312
           +++  ++++   PNV S + +L +  +G       A  L+  MQ     +    YNS++ 
Sbjct: 177 KLFWGMRKMGIEPNVVSYNTLLRV--YGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMM 234

Query: 313 VYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTK 372
           +Y K    +KA+ L++EM   G +PN+ITY         S ++    K  +L    +  +
Sbjct: 235 IYGKTLEHEKANNLIQEMQSRGIEPNSITY---------STIISIWGKVGKLDRAAMLFQ 285

Query: 373 KVRSSTPWLETTL--SIIEIFAEKGDVGNAENLFEELKKAN 411
           K+RSS   ++  L  ++I  +   G V +A+ L  ELK+ +
Sbjct: 286 KLRSSGVEIDQILFQTMIVAYERAGLVAHAKRLLHELKRPD 326



 Score = 44.7 bits (104), Expect = 0.093,   Method: Compositional matrix adjust.
 Identities = 53/247 (21%), Positives = 99/247 (40%), Gaps = 45/247 (18%)

Query: 187 VYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYG 246
           ++ +M++  + P+  +Y  L T      L+  A ++++ +E+     +       ++LY 
Sbjct: 3   LFDEMRQRALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDQVPGD-------LVLYS 55

Query: 247 YLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQ 306
            L    +L R           +   Y  AI  F R+ +     +L               
Sbjct: 56  NLI---ELSR-----------KLCDYSKAISIFSRLKRSGFTPDLV-------------A 88

Query: 307 YNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGM 366
           YN++I+V+ K     +A  L+ EM   G  PN  +Y  L        +  E  K LE   
Sbjct: 89  YNAMINVFGKAKLFREARSLISEMKTAGVMPNTTSYSTLL------TMYVENKKFLE--- 139

Query: 367 KLITTKKVRSSTPWLETTLS--IIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIK 424
            L    ++R     L+ T    +I+++ + G    A+ LF  ++K         YNTL++
Sbjct: 140 ALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTLLR 199

Query: 425 AYVKAKI 431
            Y  A++
Sbjct: 200 VYGDAEL 206



 Score = 40.4 bits (93), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 35/134 (26%), Positives = 55/134 (41%), Gaps = 11/134 (8%)

Query: 325 GLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPW-LET 383
           GL  EM      P+  TY  L     K  L +     L+        K  +   P  L  
Sbjct: 2   GLFDEMRQRALSPDRYTYSTLITHFGKEGLFDAALSWLQ--------KMEQDQVPGDLVL 53

Query: 384 TLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKI--NDPNLLRRMI 441
             ++IE+  +  D   A ++F  LK++ +T     YN +I  + KAK+     +L+  M 
Sbjct: 54  YSNLIELSRKLCDYSKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMK 113

Query: 442 LGGARPDAETYSLL 455
             G  P+  +YS L
Sbjct: 114 TAGVMPNTTSYSTL 127


>gi|90399139|emb|CAJ86163.1| H0913C04.4 [Oryza sativa Indica Group]
 gi|125550286|gb|EAY96108.1| hypothetical protein OsI_17985 [Oryza sativa Indica Group]
          Length = 900

 Score = 73.2 bits (178), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 67/309 (21%), Positives = 131/309 (42%), Gaps = 18/309 (5%)

Query: 127 SISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMK 186
           S++ ++++ +I  +   G  +    ++ +M+ D +   +  +H +M       N    + 
Sbjct: 365 SLNGIIYSNIIHAHCQSGNMERAEELVCEMEEDGIDAPIDVYHSMMHGYTIIQNENKCLV 424

Query: 187 VYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYG 246
           V+  +K    +P+ +SY  L   +        A +  + +E     +N  T  +LI  + 
Sbjct: 425 VFERLKECGFKPSIISYGCLLNLYVKIGKVAKALSISKEMESCGIKHNNKTYSMLINGFI 484

Query: 247 YLAKGKDLERIWATVQELPNVRS------KSYVLAIEAFGRIAQVSRAEELWLEMQSVKQ 300
           +L    D    +A  +E+  +RS        Y L IEAF ++  + RA  +  +MQ  + 
Sbjct: 485 HL---HDFANAFAIFEEM--LRSGLQPDRAIYNLLIEAFCKMGNMDRAICILEKMQKERM 539

Query: 301 LKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFK 360
             +   +  +I  Y   G +  A   L  M  +GC P  +TY  L  G  + + V+    
Sbjct: 540 QPSNRAFRPIIEGYAVAGDMKSALDTLDLMRRSGCVPTVMTYNALIHGLVRKHKVQRAVS 599

Query: 361 ALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYN 420
            L+          +   TP   T   I+  +A  GD+G A   F ++K++      ++Y 
Sbjct: 600 VLD-------KMSIAGITPNEHTYTIIMRGYAASGDIGKAFEYFTKIKESGLKLDVYIYE 652

Query: 421 TLIKAYVKA 429
           TL++A  K+
Sbjct: 653 TLLRACCKS 661



 Score = 68.9 bits (167), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 74/298 (24%), Positives = 125/298 (41%), Gaps = 12/298 (4%)

Query: 94  NELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNIL 153
           +  +YN L+ A    G +  ++  ++KM+      S   F  +I   +  G  K+  + L
Sbjct: 507 DRAIYNLLIEAFCKMGNMDRAICILEKMQKERMQPSNRAFRPIIEGYAVAGDMKSALDTL 566

Query: 154 RQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVA 213
             M+     P V T++ L+      H ++  + V   M  + + PNE +Y I+   +A +
Sbjct: 567 DLMRRSGCVPTVMTYNALIHGLVRKHKVQRAVSVLDKMSIAGITPNEHTYTIIMRGYAAS 626

Query: 214 RLYTVAETYVEALEKSMTGNNWSTLDVLI--ILYGYLAKGKDLERIWATVQELPNVRSKS 271
                A  Y   +++S        LDV I   L     K   ++   A  +E+   +   
Sbjct: 627 GDIGKAFEYFTKIKESGL-----KLDVYIYETLLRACCKSGRMQSALAVTREMSFQKIPR 681

Query: 272 ----YVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLL 327
               Y + I+ + R   V  AE+L  +M+          Y S I+  CK G + +A  ++
Sbjct: 682 NTFIYNILIDGWARRGDVWEAEDLMKQMKEDGVPPNIHTYTSYINACCKAGDMQRAEKVI 741

Query: 328 KEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTL 385
           +EM   G KPN  TY  L  G  + +L +   K  E  MKL   K   +S   L T+L
Sbjct: 742 EEMVDVGLKPNVKTYTTLIKGWARVSLPDRALKCFE-EMKLAGLKPDEASYHCLVTSL 798



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 95/437 (21%), Positives = 171/437 (39%), Gaps = 55/437 (12%)

Query: 28  EIFHSINRLRKLQLNKRALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQGEKLFCC 87
           +++HS+     +  N+    V+   ++E  ++P  + Y  LL   +K   +++       
Sbjct: 404 DVYHSMMHGYTIIQNENKCLVVFERLKECGFKPSIISYGCLLNLYVKIGKVAKA----LS 459

Query: 88  IPKDYQN-ELLYNNLVIACLDKGVIKL-----SLEYMKKMRVLGHSISYLVFNRLIILNS 141
           I K+ ++  + +NN   + L  G I L     +    ++M   G      ++N LI    
Sbjct: 460 ISKEMESCGIKHNNKTYSMLINGFIHLHDFANAFAIFEEMLRSGLQPDRAIYNLLIEAFC 519

Query: 142 SPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEV 201
             G       IL +M+ +++ P    F  +++  A   +++  +     M+RS   P  +
Sbjct: 520 KMGNMDRAICILEKMQKERMQPSNRAFRPIIEGYAVAGDMKSALDTLDLMRRSGCVPTVM 579

Query: 202 SYCILATAHAVARLYTVAETYVEALEK-SMTGNNWSTLDVLIILYGYLAKGKDLERIWAT 260
           +Y  L   H + R + V +  V  L+K S+ G   +     II+ GY A G D+ +    
Sbjct: 580 TYNALI--HGLVRKHKV-QRAVSVLDKMSIAGITPNEHTYTIIMRGYAASG-DIGK---- 631

Query: 261 VQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFI 320
                         A E F +I +     ++++             Y +++   CK+G +
Sbjct: 632 --------------AFEYFTKIKESGLKLDVYI-------------YETLLRACCKSGRM 664

Query: 321 DKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPW 380
             A  + +EMS      N   Y  L  G  +   V E          L+   K     P 
Sbjct: 665 QSALAVTREMSFQKIPRNTFIYNILIDGWARRGDVWEA-------EDLMKQMKEDGVPPN 717

Query: 381 LETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKINDPNL--LR 438
           + T  S I    + GD+  AE + EE+           Y TLIK + +  + D  L    
Sbjct: 718 IHTYTSYINACCKAGDMQRAEKVIEEMVDVGLKPNVKTYTTLIKGWARVSLPDRALKCFE 777

Query: 439 RMILGGARPDAETYSLL 455
            M L G +PD  +Y  L
Sbjct: 778 EMKLAGLKPDEASYHCL 794



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 77/366 (21%), Positives = 141/366 (38%), Gaps = 55/366 (15%)

Query: 133 FNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMK 192
           F  +I+  +  G +         M+A  + P+   F  L+   A   ++ G +    +MK
Sbjct: 266 FGLMIVYYAKRGDKHHARATFENMRARGIEPNAFVFTSLVHAYAVARDMRGALSCVEEMK 325

Query: 193 RSEVEPNEVSYCILATAHA-------VARLYTVAETYVEALE----------KSMTGN-- 233
              +E   V+Y IL +  A          L+  A+T + +L              +GN  
Sbjct: 326 SEGLELTIVTYSILISGFAKINDSQSADNLFKEAKTKLSSLNGIIYSNIIHAHCQSGNME 385

Query: 234 ---------NWSTLDVLIILYGYLAKG----KDLERIWATVQELPNVRSK----SYVLAI 276
                        +D  I +Y  +  G    ++  +     + L     K    SY   +
Sbjct: 386 RAEELVCEMEEDGIDAPIDVYHSMMHGYTIIQNENKCLVVFERLKECGFKPSIISYGCLL 445

Query: 277 EAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFID-----KASGLLKEMS 331
             + +I +V++A  +  EM+S       + Y+ +I     NGFI       A  + +EM 
Sbjct: 446 NLYVKIGKVAKALSISKEMESCGIKHNNKTYSMLI-----NGFIHLHDFANAFAIFEEML 500

Query: 332 MNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIF 391
            +G +P+   Y  L     K   ++     LE   K       R+  P       IIE +
Sbjct: 501 RSGLQPDRAIYNLLIEAFCKMGNMDRAICILEKMQKERMQPSNRAFRP-------IIEGY 553

Query: 392 AEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYV-KAKINDP-NLLRRMILGGARPDA 449
           A  GD+ +A +  + ++++        YN LI   V K K+    ++L +M + G  P+ 
Sbjct: 554 AVAGDMKSALDTLDLMRRSGCVPTVMTYNALIHGLVRKHKVQRAVSVLDKMSIAGITPNE 613

Query: 450 ETYSLL 455
            TY+++
Sbjct: 614 HTYTII 619



 Score = 38.9 bits (89), Expect = 6.0,   Method: Compositional matrix adjust.
 Identities = 27/117 (23%), Positives = 55/117 (47%)

Query: 93  QNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNI 152
           +N  +YN L+     +G +  + + MK+M+  G   +   +   I      G  +    +
Sbjct: 681 RNTFIYNILIDGWARRGDVWEAEDLMKQMKEDGVPPNIHTYTSYINACCKAGDMQRAEKV 740

Query: 153 LRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATA 209
           + +M    + P+V T+  L+K  A     +  +K + +MK + ++P+E SY  L T+
Sbjct: 741 IEEMVDVGLKPNVKTYTTLIKGWARVSLPDRALKCFEEMKLAGLKPDEASYHCLVTS 797


>gi|449436321|ref|XP_004135941.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g53170-like [Cucumis sativus]
 gi|449514880|ref|XP_004164505.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g53170-like [Cucumis sativus]
          Length = 477

 Score = 73.2 bits (178), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 60/281 (21%), Positives = 127/281 (45%), Gaps = 15/281 (5%)

Query: 98  YNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPN----IL 153
           Y+ L+  C       L  + +  M  LG + + + +N +I   +  G+ K        +L
Sbjct: 201 YSILIDCCTRLRRFDLLKKILADMSCLGITCNTVTYNTII---NGFGKAKMFEQMESLLL 257

Query: 154 RQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVA 213
             +++D   P + TF+  ++   N   IE + K Y + +   +EP+  +Y  + +++  A
Sbjct: 258 EMIESDSCPPDLITFNTFIRAYGNSEQIEKMEKWYKEFQLMGIEPDIWTYNSMISSYGKA 317

Query: 214 RLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQ---ELPNVRSK 270
            +Y   ++ +  +EK        T++ +I  +G     +++E  +  ++     PN  S 
Sbjct: 318 GMYDKMKSVLNFMEKRFFSPTIVTMNTIIDSFGRAGNIEEMEEYFKNMKFQGMKPN--SV 375

Query: 271 SYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEM 330
           +Y   + A+G+   + + + +  ++++   +  T  +N +I+VY + G + K   L  EM
Sbjct: 376 TYCSLVNAYGKSGDLEKVDSILRQIENSDVVPDTPLFNCLINVYGQAGNVRKMGELFLEM 435

Query: 331 SMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITT 371
             N C P+ IT+  +        + E+   A  L  KLI T
Sbjct: 436 KENKCVPDGITFATMIRALKAQGMTED---AQRLENKLIAT 473



 Score = 59.3 bits (142), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 59/283 (20%), Positives = 116/283 (40%), Gaps = 13/283 (4%)

Query: 147 KTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCIL 206
           K I  +          P V T+ IL+         + L K+ +DM    +  N V+Y  +
Sbjct: 180 KAISTVDEMKSISDCKPDVHTYSILIDCCTRLRRFDLLKKILADMSCLGITCNTVTYNTI 239

Query: 207 ATAHAVARLYTVAET-YVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQEL- 264
                 A+++   E+  +E +E      +  T +  I  YG   + + +E+ +   Q + 
Sbjct: 240 INGFGKAKMFEQMESLLLEMIESDSCPPDLITFNTFIRAYGNSEQIEKMEKWYKEFQLMG 299

Query: 265 --PNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDK 322
             P++   +Y   I ++G+     + + +   M+           N++I  + + G I++
Sbjct: 300 IEPDIW--TYNSMISSYGKAGMYDKMKSVLNFMEKRFFSPTIVTMNTIIDSFGRAGNIEE 357

Query: 323 ASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLE 382
                K M   G KPN++TY  L     KS  +E+    ++  ++ I    V   TP   
Sbjct: 358 MEEYFKNMKFQGMKPNSVTYCSLVNAYGKSGDLEK----VDSILRQIENSDVVPDTPLFN 413

Query: 383 TTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKA 425
               +I ++ + G+V     LF E+K+         + T+I+A
Sbjct: 414 C---LINVYGQAGNVRKMGELFLEMKENKCVPDGITFATMIRA 453



 Score = 44.7 bits (104), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 37/198 (18%), Positives = 88/198 (44%), Gaps = 4/198 (2%)

Query: 96  LLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQ 155
           + +N  + A  +   I+   ++ K+ +++G       +N +I      G    + ++L  
Sbjct: 270 ITFNTFIRAYGNSEQIEKMEKWYKEFQLMGIEPDIWTYNSMISSYGKAGMYDKMKSVLNF 329

Query: 156 MKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARL 215
           M+    +P + T + ++       NIE + + + +MK   ++PN V+YC L  A+  +  
Sbjct: 330 MEKRFFSPTIVTMNTIIDSFGRAGNIEEMEEYFKNMKFQGMKPNSVTYCSLVNAYGKSGD 389

Query: 216 YTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQE---LPN-VRSKS 271
               ++ +  +E S    +    + LI +YG     + +  ++  ++E   +P+ +   +
Sbjct: 390 LEKVDSILRQIENSDVVPDTPLFNCLINVYGQAGNVRKMGELFLEMKENKCVPDGITFAT 449

Query: 272 YVLAIEAFGRIAQVSRAE 289
            + A++A G      R E
Sbjct: 450 MIRALKAQGMTEDAQRLE 467


>gi|255661170|gb|ACU25754.1| pentatricopeptide repeat-containing protein [Junellia spathulata]
          Length = 426

 Score = 73.2 bits (178), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 74/322 (22%), Positives = 149/322 (46%), Gaps = 22/322 (6%)

Query: 98  YNNLVIACLDKGVIKLSLEYMKKM---RVLGHSISYLVFNRLIILNSSPGRRKTIPNILR 154
           Y+ L+     +G+   +L +++KM   RV G  + Y   + LI L+          +I  
Sbjct: 12  YSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLY---SNLIELSRKLCDYSKAISIFS 68

Query: 155 QMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVAR 214
           ++K     P +  ++ ++ +            + S+M+ + V PN  SY  L T +   +
Sbjct: 69  RLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTASYSTLLTMYVENK 128

Query: 215 LYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQEL---PNVRSKS 271
            +  A +    + +     + +T +++I +YG L   K+ ++++  ++++   PNV S +
Sbjct: 129 KFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYN 188

Query: 272 YVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMS 331
            +L +  +G       A  L+  MQ     +    YNS++ +Y K    +KA+ L++EM 
Sbjct: 189 TLLRV--YGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQ 246

Query: 332 MNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTL--SIIE 389
             G +PN+ITY         S ++    K  +L    +  +K+RSS   ++  L  ++I 
Sbjct: 247 NRGIEPNSITY---------STIISIWGKVGKLDRAAMLFQKLRSSGVDIDQVLYQTMIV 297

Query: 390 IFAEKGDVGNAENLFEELKKAN 411
            +   G V +A+ L  ELK+ +
Sbjct: 298 AYERAGLVAHAKRLLHELKRPD 319



 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 76/370 (20%), Positives = 162/370 (43%), Gaps = 20/370 (5%)

Query: 65  YSYLLEFTIKNHGISQGEKLFCCIPKD-YQNELLYNNLVIACLDKG-VIKLSLEYMKKMR 122
           YS L+E + K    S+   +F  + +  +  +L+  N +I    K  + + +   + +MR
Sbjct: 47  YSNLIELSRKLCDYSKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMR 106

Query: 123 VLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIE 182
             G + +   ++ L+ +     +     ++  +M+  K    ++T +I++ +       +
Sbjct: 107 TAGVTPNTASYSTLLTMYVENKKFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAK 166

Query: 183 GLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLI 242
              K++  M++  +EPN VSY  L   +  A L+  A      +++     N  T + ++
Sbjct: 167 EADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMM 226

Query: 243 ILYGYLAKGKDLERIWATVQELPN----VRSKSYVLAIEAFGRIAQVSRAEELWLEMQSV 298
           ++YG   K  + E+    +QE+ N      S +Y   I  +G++ ++ RA  L+ +++S 
Sbjct: 227 MIYG---KTLEHEKANNLIQEMQNRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSS 283

Query: 299 KQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEG 358
                   Y ++I  Y + G +  A  LL E+      P  I    LA     +  +EE 
Sbjct: 284 GVDIDQVLYQTMIVAYERAGLVAHAKRLLHELKRPDNIPRDIAIHILA----GAGRIEE- 338

Query: 359 FKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFV 418
             A  +  + I   +V+  T +      +I +F++    GN   +F++++   Y   + V
Sbjct: 339 --ATWVFRQAIDAGEVKDITVFER----MIHLFSKYKKYGNVVVVFDKMRGLGYFPDSNV 392

Query: 419 YNTLIKAYVK 428
              ++ AY K
Sbjct: 393 IALVLNAYGK 402



 Score = 41.2 bits (95), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 32/125 (25%), Positives = 56/125 (44%), Gaps = 7/125 (5%)

Query: 307 YNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGM 366
           YN++I+V+ K     +A  L+ EM   G  PN  +Y  L        +  E  K LE   
Sbjct: 82  YNAMINVFGKAKLFREARSLISEMRTAGVTPNTASYSTLL------TMYVENKKFLEALS 135

Query: 367 KLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAY 426
                ++++     L T   +I+++ + G    A+ LF  ++K         YNTL++ Y
Sbjct: 136 VFAEMREIKCLLD-LTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVY 194

Query: 427 VKAKI 431
             A++
Sbjct: 195 GDAEL 199



 Score = 40.0 bits (92), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 32/126 (25%), Positives = 58/126 (46%), Gaps = 11/126 (8%)

Query: 307 YNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGM 366
           Y+++I+ + K G  D A   L++M  +    + + Y         SNL+E   K  +   
Sbjct: 12  YSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLY---------SNLIELSRKLCDYSK 62

Query: 367 KLITTKKVRSS--TPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIK 424
            +    +++ S  TP L    ++I +F +      A +L  E++ A  T  T  Y+TL+ 
Sbjct: 63  AISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTASYSTLLT 122

Query: 425 AYVKAK 430
            YV+ K
Sbjct: 123 MYVENK 128


>gi|255556711|ref|XP_002519389.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223541456|gb|EEF43006.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 634

 Score = 73.2 bits (178), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 92/455 (20%), Positives = 177/455 (38%), Gaps = 93/455 (20%)

Query: 92  YQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLI-------------- 137
           Y + +++N+LV A    G    + + +KKM + G+   Y+V+N LI              
Sbjct: 8   YPSPMIFNSLVHAYCRSGDYFYAYKLLKKMVICGYQPGYVVYNILIGGICSTEDLPSMEV 67

Query: 138 ----------------ILN-----------SSPGRRKTIPNILRQMKADKVAPHVSTFHI 170
                           +LN              G+ +   N++R+M +    P  ST+  
Sbjct: 68  IGLAERAYNEMLEMGVVLNKVNVCNFTRCLCCIGKFEKAYNVIREMMSKGFIPDSSTYSK 127

Query: 171 LMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSM 230
           ++    N   +E   +++ +MKR+ + P+  +Y  L        L   A  + + +++  
Sbjct: 128 VIGYLCNASKVEKAFQLFQEMKRNGITPDVYTYTTLLDRFCKVGLIEQARNWFDEMQQDG 187

Query: 231 TGNNWSTLDVLIILY---GYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSR 287
              N  T   LI  Y     L++  ++  +  +   +PN+   +Y   I+   +  +  +
Sbjct: 188 CAPNVVTYTALIHAYLKTRKLSRANEIFEMMLSNGCVPNIV--TYTALIDGHCKAGETEK 245

Query: 288 AEELWLEMQSVK---------------QLKATE--QYNSVISVYCKNGFIDKASGLLKEM 330
           A +++  M++ K               +LK      Y +++   CK   + +A  LL+ M
Sbjct: 246 ACQIYARMKNDKVDIPDVDIYFRIVDSELKEPNVVTYGALVDGLCKAHKVKEARDLLETM 305

Query: 331 SMNGCKPNAITY---------------------RHLALGCFK-----SNLVEEGFKA--L 362
           S+ GC+PN I Y                     + L  GC       S+L+++ FK   L
Sbjct: 306 SLEGCEPNQIIYDALIDGFCKVGKLDEAQEVFTKMLGHGCSPNVYTYSSLIDKLFKDKRL 365

Query: 363 ELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTL 422
           +L +K++T     S  P +     +++   + G    A  L   +++         Y  +
Sbjct: 366 DLALKVLTKMLENSCAPNVVIYTEMVDGLCKVGKTDEAYRLMLMMEEKGCYPNVVTYTAM 425

Query: 423 IKAYVKAKINDP--NLLRRMILGGARPDAETYSLL 455
           I  + KA   D    LL+ M   G  P+  TY +L
Sbjct: 426 IDGFGKAGRVDRCLELLQLMTSKGCAPNFITYRVL 460



 Score = 61.6 bits (148), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 76/330 (23%), Positives = 129/330 (39%), Gaps = 32/330 (9%)

Query: 60  PKELDYSYLLEFTIKNHGISQGEKLFCCIPKD--YQNELLYNNLVIACLDKGVIKLSLEY 117
           P    Y+ LL+   K   I Q    F  + +D    N + Y  L+ A L    +  + E 
Sbjct: 155 PDVYTYTTLLDRFCKVGLIEQARNWFDEMQQDGCAPNVVTYTALIHAYLKTRKLSRANEI 214

Query: 118 MKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKV---------------- 161
            + M   G   + + +  LI  +   G  +    I  +MK DKV                
Sbjct: 215 FEMMLSNGCVPNIVTYTALIDGHCKAGETEKACQIYARMKNDKVDIPDVDIYFRIVDSEL 274

Query: 162 -APHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHA-VARLYTVA 219
             P+V T+  L+      H ++    +   M     EPN++ Y  L      V +L    
Sbjct: 275 KEPNVVTYGALVDGLCKAHKVKEARDLLETMSLEGCEPNQIIYDALIDGFCKVGKLDEAQ 334

Query: 220 ETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQEL------PNVRSKSYV 273
           E + + L    + N ++   ++  L+    K K L+     + ++      PNV    Y 
Sbjct: 335 EVFTKMLGHGCSPNVYTYSSLIDKLF----KDKRLDLALKVLTKMLENSCAPNVVI--YT 388

Query: 274 LAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMN 333
             ++   ++ +   A  L L M+          Y ++I  + K G +D+   LL+ M+  
Sbjct: 389 EMVDGLCKVGKTDEAYRLMLMMEEKGCYPNVVTYTAMIDGFGKAGRVDRCLELLQLMTSK 448

Query: 334 GCKPNAITYRHLALGCFKSNLVEEGFKALE 363
           GC PN ITYR L   C  + L+++  K LE
Sbjct: 449 GCAPNFITYRVLINHCCAAGLLDDAHKLLE 478


>gi|449467657|ref|XP_004151539.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g16010-like [Cucumis sativus]
          Length = 637

 Score = 73.2 bits (178), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 87/404 (21%), Positives = 167/404 (41%), Gaps = 44/404 (10%)

Query: 64  DYSYLLEFTIKNHGISQGEKLFCCIPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMRV 123
           D+++ L   +K +G+   EK++  I   Y             L+K  ++ +L  +++M+ 
Sbjct: 247 DFAFRLFDEMKENGLHPTEKIYTTILAMYFK-----------LNK--VEAALRLVEEMKG 293

Query: 124 LGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEG 183
            G + +   +  LI      GR     ++   M  D   P V   + L+ I      +E 
Sbjct: 294 KGCAPTVFTYTELIKGLGKVGRVDDAYSLFFNMLKDGCKPDVVLINNLINILGRAGRLED 353

Query: 184 LMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSM-------TGNNWS 236
            +K++  M   +  PN V+Y  +  A        + E+   A E ++        G   S
Sbjct: 354 ALKLFGKMDSLQCAPNVVTYNTVIKA--------IFESKAPASEAALWFEKMKANGIAPS 405

Query: 237 TLDVLIILYGYLAKGKDLERIWATVQEL-----PNVRSKSYVLAIEAFGRIAQVSRAEEL 291
           +    I++ G+  K   +E+    ++E+     P   + +Y   I++ GR  +   A EL
Sbjct: 406 SFTYAILIDGF-CKTNRVEKALLLLEEMDEKGFPPCPA-AYCSLIDSLGRAKRYEAANEL 463

Query: 292 WLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFK 351
           + E++      +   Y  +I  +   G +  A  L  EM   GC P+  TY  L  G  +
Sbjct: 464 FQELKENCGRSSARVYAVMIKHFGNCGRLSDAVDLFCEMKKLGCSPDVYTYNALMSGMIR 523

Query: 352 SNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKAN 411
           + +++E          L+   +    TP +++   I+   A+ G    A  +F ++K++ 
Sbjct: 524 AGMIDEAH-------SLMRNMRENGCTPDIKSHNIILNGLAKTGGPKRAIEMFTKMKESE 576

Query: 412 YTKYTFVYNTLIKAYVKAKIND--PNLLRRMILGGARPDAETYS 453
                  YNT++    +A + +    L+R M L G   D+ TYS
Sbjct: 577 IMPDAVSYNTILSCLSRAGMFEMAAKLMREMKLKGFEYDSITYS 620



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 83/399 (20%), Positives = 164/399 (41%), Gaps = 52/399 (13%)

Query: 35  RLRKLQLNKRALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQGEKLFCCIPKD--Y 92
           +L K++   R +E M    + +   P    Y+ L++   K   +     LF  + KD   
Sbjct: 277 KLNKVEAALRLVEEM----KGKGCAPTVFTYTELIKGLGKVGRVDDAYSLFFNMLKDGCK 332

Query: 93  QNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLI--ILNS-SPGRRKTI 149
            + +L NNL+      G ++ +L+   KM  L  + + + +N +I  I  S +P     +
Sbjct: 333 PDVVLINNLINILGRAGRLEDALKLFGKMDSLQCAPNVVTYNTVIKAIFESKAPASEAAL 392

Query: 150 PNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATA 209
                +MKA+ +AP   T+ IL+      + +E  + +  +M      P   +YC L  +
Sbjct: 393 --WFEKMKANGIAPSSFTYAILIDGFCKTNRVEKALLLLEEMDEKGFPPCPAAYCSLIDS 450

Query: 210 HAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRS 269
              A+ Y  A    + L+++                     G+   R++A +        
Sbjct: 451 LGRAKRYEAANELFQELKENC--------------------GRSSARVYAVM-------- 482

Query: 270 KSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKE 329
                 I+ FG   ++S A +L+ EM+ +        YN+++S   + G ID+A  L++ 
Sbjct: 483 ------IKHFGNCGRLSDAVDLFCEMKKLGCSPDVYTYNALMSGMIRAGMIDEAHSLMRN 536

Query: 330 MSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIE 389
           M  NGC P+  ++  +  G  K+          +  +++ T  K     P   +  +I+ 
Sbjct: 537 MRENGCTPDIKSHNIILNGLAKTG-------GPKRAIEMFTKMKESEIMPDAVSYNTILS 589

Query: 390 IFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVK 428
             +  G    A  L  E+K   +   +  Y+++++A  K
Sbjct: 590 CLSRAGMFEMAAKLMREMKLKGFEYDSITYSSILEAVGK 628



 Score = 58.5 bits (140), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 77/303 (25%), Positives = 135/303 (44%), Gaps = 28/303 (9%)

Query: 166 STFHILMKIEANDHNIEGLMKVYSDMKRS--EVEPNEVSYC--ILATAHAVARLYTVAET 221
           +T+  L++       ++ + +   DM RS   V P E S    IL  A  V +  +V   
Sbjct: 125 TTYMALIRCLEESGLVDEMWRTIQDMIRSPCSVGPAEWSEILKILGKAKMVNKALSVF-Y 183

Query: 222 YVEALEKSMTGNNWSTLDVLIILYGYLAKGKDL-ERIWATVQELPNVRSKSYVLAIEAFG 280
            ++  + + T   ++TL ++++  G+  K  +L   I +     P+  + +Y   I AFG
Sbjct: 184 QIKGRKCNPTATVYNTLILMLMHEGHHEKIHELYNEICSEGNCSPD--TITYSALISAFG 241

Query: 281 RIAQVSRAEELWLEMQSVKQLKATEQ-YNSVISVYCKNGFIDKASGLLKEMSMNGCKPNA 339
           ++ +   A  L+ EM+    L  TE+ Y +++++Y K   ++ A  L++EM   GC P  
Sbjct: 242 KLERYDFAFRLFDEMKE-NGLHPTEKIYTTILAMYFKLNKVEAALRLVEEMKGKGCAPTV 300

Query: 340 ITYRHLALGCFKSNLVEEG----FKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKG 395
            TY  L  G  K   V++     F  L+ G K           P +    ++I I    G
Sbjct: 301 FTYTELIKGLGKVGRVDDAYSLFFNMLKDGCK-----------PDVVLINNLINILGRAG 349

Query: 396 DVGNAENLFEELKKANYTKYTFVYNTLIKAYV--KAKINDPNL-LRRMILGGARPDAETY 452
            + +A  LF ++           YNT+IKA    KA  ++  L   +M   G  P + TY
Sbjct: 350 RLEDALKLFGKMDSLQCAPNVVTYNTVIKAIFESKAPASEAALWFEKMKANGIAPSSFTY 409

Query: 453 SLL 455
           ++L
Sbjct: 410 AIL 412


>gi|224131362|ref|XP_002328520.1| predicted protein [Populus trichocarpa]
 gi|222838235|gb|EEE76600.1| predicted protein [Populus trichocarpa]
          Length = 501

 Score = 73.2 bits (178), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 71/310 (22%), Positives = 136/310 (43%), Gaps = 14/310 (4%)

Query: 151 NILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAH 210
           ++L +M    + P   TF  L+    N+  I+  ++++++M   +  PN V++ IL    
Sbjct: 142 SVLSKMFKLGIQPDSVTFTTLINGLCNEGRIKEAVELFNEMAGRDAMPNTVTFTILVDVL 201

Query: 211 AVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQE---LPNV 267
               + + A    E + +     N  T + L+  Y    +  D  +++  +      P+V
Sbjct: 202 CKKGMVSEARCVFETMTEKGVEPNIYTYNALMNGYCLRLEMNDASKVFEIMVGKGCAPSV 261

Query: 268 RSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLL 327
            S  Y + I  + +  ++  A+ L  +M   + +  T  YN+++   C    + +A  L 
Sbjct: 262 HS--YSILINGYCKSRRIDEAKALLTQMSEKELIPNTVTYNTLMQGLCHASSLLEAQELF 319

Query: 328 KEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSI 387
           K+M  +G  PN  TY  L  G  K   +EE        +KL+T+ + R   P +     +
Sbjct: 320 KKMCSSGMLPNLRTYSILLDGLCKHGHLEE-------ALKLLTSMQERKLEPDIVLYNIL 372

Query: 388 IEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKINDP--NLLRRMILGGA 445
           I+     G +  A+ LF +L           YN +IK  +K  ++D    L R+M   G 
Sbjct: 373 IQGMFIAGKLEVAKELFSKLFANGIRPSVRTYNIMIKGLLKEGLSDEAYKLFRKMEDDGF 432

Query: 446 RPDAETYSLL 455
            PD+ +Y+++
Sbjct: 433 LPDSCSYNVI 442



 Score = 40.0 bits (92), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 41/216 (18%), Positives = 82/216 (37%), Gaps = 48/216 (22%)

Query: 246 GYLAKGKDLERIWATVQELP--NVRSKSYVL--AIEAFGRIAQVSRAEELWLEMQSVKQL 301
           G +AK K    + +   ++    V    Y L   I +  R++ +  A  +  +M  +   
Sbjct: 94  GSIAKKKQYSTVVSLCNQMDLFGVAHNDYTLNILINSLCRLSHIHFAVSVLSKMFKLGIQ 153

Query: 302 KATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKA 361
             +  + ++I+  C  G I +A  L  EM+     PN +T+  L                
Sbjct: 154 PDSVTFTTLINGLCNEGRIKEAVELFNEMAGRDAMPNTVTFTIL---------------- 197

Query: 362 LELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNT 421
                                     +++  +KG V  A  +FE + +       + YN 
Sbjct: 198 --------------------------VDVLCKKGMVSEARCVFETMTEKGVEPNIYTYNA 231

Query: 422 LIKAY-VKAKINDPNLLRRMILG-GARPDAETYSLL 455
           L+  Y ++ ++ND + +  +++G G  P   +YS+L
Sbjct: 232 LMNGYCLRLEMNDASKVFEIMVGKGCAPSVHSYSIL 267



 Score = 39.7 bits (91), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 48/201 (23%), Positives = 84/201 (41%), Gaps = 15/201 (7%)

Query: 156 MKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCIL--ATAHAVA 213
           M     AP V ++ IL+        I+    + + M   E+ PN V+Y  L     HA +
Sbjct: 252 MVGKGCAPSVHSYSILINGYCKSRRIDEAKALLTQMSEKELIPNTVTYNTLMQGLCHA-S 310

Query: 214 RLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLE---RIWATVQEL---PNV 267
            L    E + +     M  N    L    IL   L K   LE   ++  ++QE    P++
Sbjct: 311 SLLEAQELFKKMCSSGMLPN----LRTYSILLDGLCKHGHLEEALKLLTSMQERKLEPDI 366

Query: 268 RSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLL 327
               Y + I+      ++  A+EL+ ++ +     +   YN +I    K G  D+A  L 
Sbjct: 367 --VLYNILIQGMFIAGKLEVAKELFSKLFANGIRPSVRTYNIMIKGLLKEGLSDEAYKLF 424

Query: 328 KEMSMNGCKPNAITYRHLALG 348
           ++M  +G  P++ +Y  +  G
Sbjct: 425 RKMEDDGFLPDSCSYNVIIQG 445


>gi|356565994|ref|XP_003551220.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At1g60770-like [Glycine max]
          Length = 469

 Score = 73.2 bits (178), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 97/457 (21%), Positives = 190/457 (41%), Gaps = 60/457 (13%)

Query: 15  QSWMREGFPVHRGEIFHSINRLRKLQLNKRALEVMEWVIRERPYRPKELDYSYLLEFTIK 74
           QS  R  +   + E+  ++ +L   +L + AL++ E  + +R       D++  L+   K
Sbjct: 53  QSGRRSTWRRRKWEVNDTLKKLDDRKLYQLALKLSE-TMAKRNMIKTVRDHAIHLDLLAK 111

Query: 75  NHGISQGEKLFCCIPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFN 134
             GI+  +  F  +P+  +N L +  ++     + +I+ +  +M+KM+ L   +S + +N
Sbjct: 112 ARGITAAKNYFVNLPESAKNHLCHGAILNCYCKEPMIEKAEGFMEKMKELSLPLSSMPYN 171

Query: 135 RLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRS 194
            LI+L +  G+ + + +++++MK   +     T+++ M+  A  ++I  + +V+ +M   
Sbjct: 172 SLIMLYTKVGQPEKVSSLIQEMKTSNIMLDSYTYNVWMRALAAVNDISSVERVHDEM--- 228

Query: 195 EVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDL 254
                                       +  LEK     + +    LI  YG  +   ++
Sbjct: 229 --------------------------MALTELEKRNAFKDLTAYQFLITFYGXTSNLYEV 262

Query: 255 ERIWATVQ-ELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQY-----N 308
            R+W +++   P   + SY+  I        V   + L  E    +       Y     N
Sbjct: 263 FRVWRSLRLAFPKTANISYLNMIRVL-----VKSKDLLGEEKCFXEXECGCPTYDIRVVN 317

Query: 309 SVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYR-----HLALGCFKSNLVEEGFKALE 363
            +I  Y K   ++KA  L +     G KPN  T       +L  G FKS  V+   +A+ 
Sbjct: 318 VLIRAYAKLDMLEKAEELKEHARRRGAKPNGKTLEIFMDYYLQKGNFKST-VDCLDEAIS 376

Query: 364 LGMKLITTKKVRSSTPWLETTLSIIEI----FAEKGDVGNAENLFEELKKANYTKYTFVY 419
           +G          +   W+  +  II+I    F ++ DV  AE   E LKK+  +    V+
Sbjct: 377 MGR--------WNGEKWVPXS-KIIDIMMRNFEQEKDVDGAEEFLEILKKSMESPGVEVF 427

Query: 420 NTLIKAYVKAKINDPNLLRRMILGGARPDAETYSLLK 456
            +L + Y         +LRR+ +   +    T  LL+
Sbjct: 428 ESLTRTYAATGRISSAMLRRLKMENVQVSEGTQKLLE 464


>gi|224138172|ref|XP_002326536.1| predicted protein [Populus trichocarpa]
 gi|222833858|gb|EEE72335.1| predicted protein [Populus trichocarpa]
          Length = 697

 Score = 73.2 bits (178), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 77/339 (22%), Positives = 142/339 (41%), Gaps = 16/339 (4%)

Query: 90  KDYQNELL-YNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKT 148
           K Y+++L+ Y+ L+   L    +K +   + +MR  G    Y+++  LI      G  K 
Sbjct: 359 KGYKHDLISYSTLIHGFLKGHNVKSANNLVHEMRKNGLVPDYIIYISLIREYCRKGCLKE 418

Query: 149 IPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILAT 208
                  M  D + P + T + ++    +    E  +   + MK   + PN  +Y ++  
Sbjct: 419 ALKNFYTMLQDGLQPDIITCNHIVDQYCSRGQFEEALIYINQMKDQNILPNSYTYSVIIN 478

Query: 209 AHAVARLYTVAETYVEALEKSMTGNNW-STLDVLIILYGYLAKGKDLERIWATVQELPNV 267
                  Y   E   E L      N + S +    I+ GY  + K+  + W   +++P +
Sbjct: 479 WLCK---YQAVEKAWEVLPVMFKDNIFPSVIHYTTIMDGYAKQFKNPMKAWKLYRKMPKL 535

Query: 268 RSK----SYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKA 323
             K    +  + ++ F +  ++S+A  L+ EM      +    + ++I  YC+ G + +A
Sbjct: 536 GCKPDNVTLTVLVDMFSKRGKMSKALNLFKEMAEEGLSRDEFAFTAIIDGYCRVGNVKRA 595

Query: 324 SGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLET 383
             + K+M  N   PN  TY  L  G  K        K L++   LI   K  S TP ++T
Sbjct: 596 WSMYKKMKRNNVTPNVKTYTCLVDGFCK-------LKRLDMATMLIDDMKRNSVTPDVKT 648

Query: 384 TLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTL 422
             ++I  +    ++  A  +F+E+KK         Y TL
Sbjct: 649 YTALIAGYQRIENIDRAYEVFDEMKKKGTLPDHIAYLTL 687



 Score = 71.2 bits (173), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 80/326 (24%), Positives = 128/326 (39%), Gaps = 38/326 (11%)

Query: 129 SYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVY 188
           S  V + LI + +S        ++  Q K   V  ++S+ + L+K  A    +E +  ++
Sbjct: 114 SATVLSLLIKVFASNKMLADAKDVFMQAKKIGVELNISSCNFLLKCLAEGDKLEAVRSLF 173

Query: 189 SDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYL 248
            D+K S   PN  +Y I+   +   R                 G N       +IL    
Sbjct: 174 DDLKNSGPSPNVYTYTIMINFYCKER----------------HGQNIDMEQASLILEEME 217

Query: 249 AKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYN 308
            KG++           P V +  Y + I    R+  +  A     +++S  Q      YN
Sbjct: 218 EKGEN-----------PTVVT--YGVYIHGLCRVGSIEDAWNKIQDLRSSNQPLNIYCYN 264

Query: 309 SVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKL 368
           ++I  +C+ G  D+A  LL+EM   G  P+  +Y  L      +    EG   +E GM L
Sbjct: 265 ALIQGFCQKGRPDEALKLLEEMKDEGISPDIYSYSILV-----NAFCTEG--DIESGMNL 317

Query: 369 ITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVK 428
           I   +  +  P L    S++     KG V +  N F EL    Y      Y+TLI  ++K
Sbjct: 318 IQEMEHCNKKPPLVCCTSVLMGLRTKGLVNDCLNFFHELSAKGYKHDLISYSTLIHGFLK 377

Query: 429 AK--INDPNLLRRMILGGARPDAETY 452
                +  NL+  M   G  PD   Y
Sbjct: 378 GHNVKSANNLVHEMRKNGLVPDYIIY 403



 Score = 53.1 bits (126), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 58/297 (19%), Positives = 122/297 (41%), Gaps = 4/297 (1%)

Query: 56  RPYRPKELDYSYLLEFTIKNHGISQGEKLFCCIPKD--YQNELLYNNLVIACLDKGVIKL 113
           + Y+   + YS L+   +K H +     L   + K+    + ++Y +L+     KG +K 
Sbjct: 359 KGYKHDLISYSTLIHGFLKGHNVKSANNLVHEMRKNGLVPDYIIYISLIREYCRKGCLKE 418

Query: 114 SLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMK 173
           +L+    M   G     +  N ++    S G+ +     + QMK   + P+  T+ +++ 
Sbjct: 419 ALKNFYTMLQDGLQPDIITCNHIVDQYCSRGQFEEALIYINQMKDQNILPNSYTYSVIIN 478

Query: 174 IEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVA-RLYTVAETYVEALEKSMTG 232
                  +E   +V   M +  + P+ + Y  +   +A   +    A      + K    
Sbjct: 479 WLCKYQAVEKAWEVLPVMFKDNIFPSVIHYTTIMDGYAKQFKNPMKAWKLYRKMPKLGCK 538

Query: 233 NNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSK-SYVLAIEAFGRIAQVSRAEEL 291
            +  TL VL+ ++    K      ++  + E    R + ++   I+ + R+  V RA  +
Sbjct: 539 PDNVTLTVLVDMFSKRGKMSKALNLFKEMAEEGLSRDEFAFTAIIDGYCRVGNVKRAWSM 598

Query: 292 WLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALG 348
           + +M+        + Y  ++  +CK   +D A+ L+ +M  N   P+  TY  L  G
Sbjct: 599 YKKMKRNNVTPNVKTYTCLVDGFCKLKRLDMATMLIDDMKRNSVTPDVKTYTALIAG 655



 Score = 52.0 bits (123), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 71/382 (18%), Positives = 151/382 (39%), Gaps = 38/382 (9%)

Query: 109 GVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTF 168
           G I+ +   ++ +R     ++   +N LI      GR      +L +MK + ++P + ++
Sbjct: 239 GSIEDAWNKIQDLRSSNQPLNIYCYNALIQGFCQKGRPDEALKLLEEMKDEGISPDIYSY 298

Query: 169 HILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEK 228
            IL+     + +IE  M +  +M+    +P  V  C  +    +     V +      E 
Sbjct: 299 SILVNAFCTEGDIESGMNLIQEMEHCNKKPPLV--CCTSVLMGLRTKGLVNDCLNFFHEL 356

Query: 229 SMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQEL-PNVRSKSYVL---AIEAFGRIAQ 284
           S  G     +    +++G+L KG +++     V E+  N     Y++    I  + R   
Sbjct: 357 SAKGYKHDLISYSTLIHGFL-KGHNVKSANNLVHEMRKNGLVPDYIIYISLIREYCRKGC 415

Query: 285 VSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRH 344
           +  A + +  M            N ++  YC  G  ++A   + +M      PN+ TY  
Sbjct: 416 LKEALKNFYTMLQDGLQPDIITCNHIVDQYCSRGQFEEALIYINQMKDQNILPNSYTYSV 475

Query: 345 LALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLE---------------------- 382
           +     K   VE+ ++ L +  K      V   T  ++                      
Sbjct: 476 IINWLCKYQAVEKAWEVLPVMFKDNIFPSVIHYTTIMDGYAKQFKNPMKAWKLYRKMPKL 535

Query: 383 ------TTLSI-IEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVK-AKINDP 434
                  TL++ +++F+++G +  A NLF+E+ +   ++  F +  +I  Y +   +   
Sbjct: 536 GCKPDNVTLTVLVDMFSKRGKMSKALNLFKEMAEEGLSRDEFAFTAIIDGYCRVGNVKRA 595

Query: 435 -NLLRRMILGGARPDAETYSLL 455
            ++ ++M      P+ +TY+ L
Sbjct: 596 WSMYKKMKRNNVTPNVKTYTCL 617



 Score = 50.1 bits (118), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 56/262 (21%), Positives = 118/262 (45%), Gaps = 22/262 (8%)

Query: 99  NNLVIACLDKGVIKLSLEYMKKMR---VLGHSISY-LVFNRLIILNSSPGRRKTIPNILR 154
           N++V     +G  + +L Y+ +M+   +L +S +Y ++ N L    +     + +P + +
Sbjct: 439 NHIVDQYCSRGQFEEALIYINQMKDQNILPNSYTYSVIINWLCKYQAVEKAWEVLPVMFK 498

Query: 155 QMKADKVAPHVSTFHILMKIEANDH-NIEGLMKVYSDMKRSEVEPNEVSYCILATAHAV- 212
               D + P V  +  +M   A    N     K+Y  M +   +P+ V+  +L    +  
Sbjct: 499 ----DNIFPSVIHYTTIMDGYAKQFKNPMKAWKLYRKMPKLGCKPDNVTLTVLVDMFSKR 554

Query: 213 ARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQEL------PN 266
            ++      + E  E+ ++ + ++      I+ GY   G +++R W+  +++      PN
Sbjct: 555 GKMSKALNLFKEMAEEGLSRDEFA---FTAIIDGYCRVG-NVKRAWSMYKKMKRNNVTPN 610

Query: 267 VRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGL 326
           V  K+Y   ++ F ++ ++  A  L  +M+        + Y ++I+ Y +   ID+A  +
Sbjct: 611 V--KTYTCLVDGFCKLKRLDMATMLIDDMKRNSVTPDVKTYTALIAGYQRIENIDRAYEV 668

Query: 327 LKEMSMNGCKPNAITYRHLALG 348
             EM   G  P+ I Y  L LG
Sbjct: 669 FDEMKKKGTLPDHIAYLTLGLG 690


>gi|125544564|gb|EAY90703.1| hypothetical protein OsI_12306 [Oryza sativa Indica Group]
          Length = 644

 Score = 73.2 bits (178), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 80/370 (21%), Positives = 161/370 (43%), Gaps = 20/370 (5%)

Query: 94  NELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNIL 153
           N + +N L+      G+ +   E + +M   G +    ++  +I      G  +    IL
Sbjct: 250 NIVTFNTLIGYLCRNGLFERVHEVLAQMSEHGCTPDIRMYATIIDGICKEGHLEVANEIL 309

Query: 154 RQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVA 213
            +M +  + P+V  ++ ++K   +    +   ++ S+M + +   ++V++ IL       
Sbjct: 310 NRMPSYGLKPNVVCYNTVLKGLCSAERWKEAEELLSEMFQKDCPLDDVTFNILVDFFCQN 369

Query: 214 RLYTVAETYVEALEKSMT-GNNWSTLDVLIILYGYLAKGKDLERI-----WATVQELPNV 267
            L    +  +E LE+ ++ G     +    ++ G+  +G   E +      ++    PN 
Sbjct: 370 GL---VDRVIELLEQMLSHGCMPDVITYTTVINGFCKEGLIDEAVMLLKSMSSCGCKPN- 425

Query: 268 RSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLL 327
            + SY + ++      +   AEEL  +M           +N++I+  CK G +++A  LL
Sbjct: 426 -TVSYTIVLKGLCSAGRWVDAEELMSQMIQQGCPPNPVTFNTLINFLCKKGLVEQAIELL 484

Query: 328 KEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSI 387
           K+M +NGC P+ I+Y  +  G  K+   EE   ALEL + ++  K +  +T       SI
Sbjct: 485 KQMLVNGCSPDLISYSTVIDGLGKAGKTEE---ALEL-LNVMVNKGISPNTIIYS---SI 537

Query: 388 IEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKINDP--NLLRRMILGGA 445
               + +G V     +F+ +K         +YN +I +  K    D   +    M+  G 
Sbjct: 538 ACALSREGRVNKVIQMFDNIKDTTIRSDAVLYNAVISSLCKRWETDRAIDFFAYMVSNGC 597

Query: 446 RPDAETYSLL 455
            P+  TY++L
Sbjct: 598 MPNESTYTML 607



 Score = 73.2 bits (178), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 84/371 (22%), Positives = 153/371 (41%), Gaps = 27/371 (7%)

Query: 100 NLVI-ACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKA 158
           NLV+ A  ++G +  ++  ++K+   G     + +N ++       R   +  ++ +M  
Sbjct: 185 NLVLNAICEQGCVDEAVGLLRKLAFFGCEADIVSYNAVLKGLCMAKRWGDVEELMDEMVR 244

Query: 159 DKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTV 218
              AP++ TF+ L+     +   E + +V + M      P+   Y  +            
Sbjct: 245 VDCAPNIVTFNTLIGYLCRNGLFERVHEVLAQMSEHGCTPDIRMYATIIDG-------IC 297

Query: 219 AETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPN--------VRSK 270
            E ++E   + +       L   ++ Y  + KG      W   +EL +        +   
Sbjct: 298 KEGHLEVANEILNRMPSYGLKPNVVCYNTVLKGLCSAERWKEAEELLSEMFQKDCPLDDV 357

Query: 271 SYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEM 330
           ++ + ++ F +   V R  EL  +M S   +     Y +VI+ +CK G ID+A  LLK M
Sbjct: 358 TFNILVDFFCQNGLVDRVIELLEQMLSHGCMPDVITYTTVINGFCKEGLIDEAVMLLKSM 417

Query: 331 SMNGCKPNAITYRHLALG-CFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIE 389
           S  GCKPN ++Y  +  G C     V+    A EL  ++I     +   P   T  ++I 
Sbjct: 418 SSCGCKPNTVSYTIVLKGLCSAGRWVD----AEELMSQMIQ----QGCPPNPVTFNTLIN 469

Query: 390 IFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKINDP--NLLRRMILGGARP 447
              +KG V  A  L +++     +     Y+T+I    KA   +    LL  M+  G  P
Sbjct: 470 FLCKKGLVEQAIELLKQMLVNGCSPDLISYSTVIDGLGKAGKTEEALELLNVMVNKGISP 529

Query: 448 DAETYSLLKLA 458
           +   YS +  A
Sbjct: 530 NTIIYSSIACA 540



 Score = 48.5 bits (114), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 65/266 (24%), Positives = 94/266 (35%), Gaps = 42/266 (15%)

Query: 131 LVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSD 190
           + FN L+      G    +  +L QM +    P V T+  ++     +  I+  + +   
Sbjct: 357 VTFNILVDFFCQNGLVDRVIELLEQMLSHGCMPDVITYTTVINGFCKEGLIDEAVMLLKS 416

Query: 191 MKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAK 250
           M     +PN VSY I+      A  +  AE  +  + +     N  T + LI    +L K
Sbjct: 417 MSSCGCKPNTVSYTIVLKGLCSAGRWVDAEELMSQMIQQGCPPNPVTFNTLI---NFLCK 473

Query: 251 GKDLER-IWATVQELPNVRSK---SYVLAIEAFGRIAQVSRAEELWLEM----------- 295
              +E+ I    Q L N  S    SY   I+  G+  +   A EL   M           
Sbjct: 474 KGLVEQAIELLKQMLVNGCSPDLISYSTVIDGLGKAGKTEEALELLNVMVNKGISPNTII 533

Query: 296 ------------------QSVKQLKATE------QYNSVISVYCKNGFIDKASGLLKEMS 331
                             Q    +K T        YN+VIS  CK    D+A      M 
Sbjct: 534 YSSIACALSREGRVNKVIQMFDNIKDTTIRSDAVLYNAVISSLCKRWETDRAIDFFAYMV 593

Query: 332 MNGCKPNAITYRHLALGCFKSNLVEE 357
            NGC PN  TY  L  G     L +E
Sbjct: 594 SNGCMPNESTYTMLIKGLASEGLAKE 619


>gi|108709396|gb|ABF97191.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|215687193|dbj|BAG91758.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|222625245|gb|EEE59377.1| hypothetical protein OsJ_11489 [Oryza sativa Japonica Group]
          Length = 644

 Score = 73.2 bits (178), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 80/370 (21%), Positives = 161/370 (43%), Gaps = 20/370 (5%)

Query: 94  NELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNIL 153
           N + +N L+      G+ +   E + +M   G +    ++  +I      G  +    IL
Sbjct: 250 NIVTFNTLIGYLCRNGLFERVHEVLAQMSEHGCTPDIRMYATIIDGICKEGHLEVANEIL 309

Query: 154 RQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVA 213
            +M +  + P+V  ++ ++K   +    +   ++ S+M + +   ++V++ IL       
Sbjct: 310 NRMPSYGLKPNVVCYNTVLKGLCSAERWKEAEELLSEMFQKDCPLDDVTFNILVDFFCQN 369

Query: 214 RLYTVAETYVEALEKSMT-GNNWSTLDVLIILYGYLAKGKDLERI-----WATVQELPNV 267
            L    +  +E LE+ ++ G     +    ++ G+  +G   E +      ++    PN 
Sbjct: 370 GL---VDRVIELLEQMLSHGCMPDVITYTTVINGFCKEGLIDEAVMLLKSMSSCGCKPN- 425

Query: 268 RSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLL 327
            + SY + ++      +   AEEL  +M           +N++I+  CK G +++A  LL
Sbjct: 426 -TVSYTIVLKGLCSAGRWVDAEELMSQMIQQGCPPNPVTFNTLINFLCKKGLVEQAIELL 484

Query: 328 KEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSI 387
           K+M +NGC P+ I+Y  +  G  K+   EE   ALEL + ++  K +  +T       SI
Sbjct: 485 KQMLVNGCSPDLISYSTVIDGLGKAGKTEE---ALEL-LNVMVNKGISPNTIIYS---SI 537

Query: 388 IEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKINDP--NLLRRMILGGA 445
               + +G V     +F+ +K         +YN +I +  K    D   +    M+  G 
Sbjct: 538 ACALSREGRVNKVIQMFDNIKDTTIRSDAVLYNAVISSLCKRWETDRAIDFFAYMVSNGC 597

Query: 446 RPDAETYSLL 455
            P+  TY++L
Sbjct: 598 MPNESTYTML 607



 Score = 73.2 bits (178), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 84/371 (22%), Positives = 153/371 (41%), Gaps = 27/371 (7%)

Query: 100 NLVI-ACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKA 158
           NLV+ A  ++G +  ++  ++K+   G     + +N ++       R   +  ++ +M  
Sbjct: 185 NLVLNAICEQGCVDEAVGLLRKLAFFGCEADIVSYNAVLKGLCMAKRWGDVEELMDEMVR 244

Query: 159 DKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTV 218
              AP++ TF+ L+     +   E + +V + M      P+   Y  +            
Sbjct: 245 VDCAPNIVTFNTLIGYLCRNGLFERVHEVLAQMSEHGCTPDIRMYATIIDG-------IC 297

Query: 219 AETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPN--------VRSK 270
            E ++E   + +       L   ++ Y  + KG      W   +EL +        +   
Sbjct: 298 KEGHLEVANEILNRMPSYGLKPNVVCYNTVLKGLCSAERWKEAEELLSEMFQKDCPLDDV 357

Query: 271 SYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEM 330
           ++ + ++ F +   V R  EL  +M S   +     Y +VI+ +CK G ID+A  LLK M
Sbjct: 358 TFNILVDFFCQNGLVDRVIELLEQMLSHGCMPDVITYTTVINGFCKEGLIDEAVMLLKSM 417

Query: 331 SMNGCKPNAITYRHLALG-CFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIE 389
           S  GCKPN ++Y  +  G C     V+    A EL  ++I     +   P   T  ++I 
Sbjct: 418 SSCGCKPNTVSYTIVLKGLCSAGRWVD----AEELMSQMIQ----QGCPPNPVTFNTLIN 469

Query: 390 IFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKINDP--NLLRRMILGGARP 447
              +KG V  A  L +++     +     Y+T+I    KA   +    LL  M+  G  P
Sbjct: 470 FLCKKGLVEQAIELLKQMLVNGCSPDLISYSTVIDGLGKAGKTEEALELLNVMVNKGISP 529

Query: 448 DAETYSLLKLA 458
           +   YS +  A
Sbjct: 530 NTIIYSSIACA 540



 Score = 48.5 bits (114), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 65/266 (24%), Positives = 94/266 (35%), Gaps = 42/266 (15%)

Query: 131 LVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSD 190
           + FN L+      G    +  +L QM +    P V T+  ++     +  I+  + +   
Sbjct: 357 VTFNILVDFFCQNGLVDRVIELLEQMLSHGCMPDVITYTTVINGFCKEGLIDEAVMLLKS 416

Query: 191 MKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAK 250
           M     +PN VSY I+      A  +  AE  +  + +     N  T + LI    +L K
Sbjct: 417 MSSCGCKPNTVSYTIVLKGLCSAGRWVDAEELMSQMIQQGCPPNPVTFNTLI---NFLCK 473

Query: 251 GKDLER-IWATVQELPNVRSK---SYVLAIEAFGRIAQVSRAEELWLEM----------- 295
              +E+ I    Q L N  S    SY   I+  G+  +   A EL   M           
Sbjct: 474 KGLVEQAIELLKQMLVNGCSPDLISYSTVIDGLGKAGKTEEALELLNVMVNKGISPNTII 533

Query: 296 ------------------QSVKQLKATE------QYNSVISVYCKNGFIDKASGLLKEMS 331
                             Q    +K T        YN+VIS  CK    D+A      M 
Sbjct: 534 YSSIACALSREGRVNKVIQMFDNIKDTTIRSDAVLYNAVISSLCKRWETDRAIDFFAYMV 593

Query: 332 MNGCKPNAITYRHLALGCFKSNLVEE 357
            NGC PN  TY  L  G     L +E
Sbjct: 594 SNGCMPNESTYTMLIKGLASEGLAKE 619


>gi|60390261|sp|Q76C99.1|RF1_ORYSI RecName: Full=Protein Rf1, mitochondrial; AltName: Full=Fertility
           restorer; AltName: Full=Protein PPR; AltName:
           Full=Restorer for CMS; Flags: Precursor
 gi|33859440|dbj|BAC77665.2| PPR protein [Oryza sativa Indica Group]
 gi|33859442|dbj|BAC77666.2| Rf1 [Oryza sativa Indica Group]
 gi|41152689|dbj|BAD08214.1| fertility restorer [Oryza sativa Indica Group]
 gi|46091159|dbj|BAD13708.1| PPR protein [Oryza sativa Indica Group]
 gi|47550657|dbj|BAD20283.1| restorer for CMS [Oryza sativa Indica Group]
          Length = 791

 Score = 73.2 bits (178), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 82/362 (22%), Positives = 147/362 (40%), Gaps = 47/362 (12%)

Query: 98  YNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMK 157
           YN+++ A      +  ++E +  M   G     + +N ++    S G+ K     L++M+
Sbjct: 234 YNSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGFLKKMR 293

Query: 158 ADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYT 217
           +D V P V T+ +LM     +       K++  M +  ++P   +Y  L   +A      
Sbjct: 294 SDGVEPDVVTYSLLMDYLCKNGRCMEARKIFDSMTKRGLKPEITTYGTLLQGYA------ 347

Query: 218 VAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSKSYVLA-- 275
                              T   L+ ++G L            +     +    YV +  
Sbjct: 348 -------------------TKGALVEMHGLL-----------DLMVRNGIHPDHYVFSIL 377

Query: 276 IEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGC 335
           I A+ +  +V +A  ++ +M+          Y +VI + CK+G ++ A    ++M   G 
Sbjct: 378 ICAYAKQGKVDQAMLVFSKMRQQGLNPNAVTYGAVIGILCKSGRVEDAMLYFEQMIDEGL 437

Query: 336 KPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKG 395
            P  I Y  L  G    N  E   +A EL ++++  + +  +T +     SII+   ++G
Sbjct: 438 SPGNIVYNSLIHGLCTCNKWE---RAEELILEML-DRGICLNTIFFN---SIIDSHCKEG 490

Query: 396 DVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKINDP--NLLRRMILGGARPDAETYS 453
            V  +E LFE + +         YNTLI  Y  A   D    LL  M+  G +P+  TYS
Sbjct: 491 RVIESEKLFELMVRIGVKPNVITYNTLINGYCLAGKMDEAMKLLSGMVSVGLKPNTVTYS 550

Query: 454 LL 455
            L
Sbjct: 551 TL 552



 Score = 66.6 bits (161), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 87/409 (21%), Positives = 166/409 (40%), Gaps = 18/409 (4%)

Query: 55  ERPYRPKELDYSYLLEFTIKNHGISQGEKLFCCIPKD--YQNELLYNNLVIACLDKGVIK 112
           +R   P  + Y+ ++    K   + +  ++   + K+    + + YN+++      G  K
Sbjct: 224 DRGILPDVVTYNSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTYNSILHGYCSSGQPK 283

Query: 113 LSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILM 172
            ++ ++KKMR  G     + ++ L+      GR      I   M    + P ++T+  L+
Sbjct: 284 EAIGFLKKMRSDGVEPDVVTYSLLMDYLCKNGRCMEARKIFDSMTKRGLKPEITTYGTLL 343

Query: 173 KIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTG 232
           +  A    +  +  +   M R+ + P+   + IL  A+A       A      + +    
Sbjct: 344 QGYATKGALVEMHGLLDLMVRNGIHPDHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLN 403

Query: 233 NNWSTLDVLIILYGYLAKGKDLERIW----ATVQELPNVRSKSYVLAIEAFGRIAQVSRA 288
            N  T   +I   G L K   +E         + E  +  +  Y   I       +  RA
Sbjct: 404 PNAVTYGAVI---GILCKSGRVEDAMLYFEQMIDEGLSPGNIVYNSLIHGLCTCNKWERA 460

Query: 289 EELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALG 348
           EEL LEM        T  +NS+I  +CK G + ++  L + M   G KPN ITY  L  G
Sbjct: 461 EELILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFELMVRIGVKPNVITYNTLING 520

Query: 349 CFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELK 408
              +  ++E  K L  GM  +  K      P   T  ++I  + +   + +A  LF+E++
Sbjct: 521 YCLAGKMDEAMKLLS-GMVSVGLK------PNTVTYSTLINGYCKISRMEDALVLFKEME 573

Query: 409 KANYTKYTFVYNTLIKAYVKAKINDP--NLLRRMILGGARPDAETYSLL 455
            +  +     YN +++   + +       L  R+   G + +  TY+++
Sbjct: 574 SSGVSPDIITYNIILQGLFQTRRTAAAKELYVRITESGTQIELSTYNII 622



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 54/198 (27%), Positives = 80/198 (40%), Gaps = 13/198 (6%)

Query: 271 SYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEM 330
           SY   I  F +     +A   + EM     L     YNS+I+  CK   +DKA  +L  M
Sbjct: 198 SYTTVINGFFKEGDSDKAYSTYHEMLDRGILPDVVTYNSIIAALCKAQAMDKAMEVLNTM 257

Query: 331 SMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSST--PWLETTLSII 388
             NG  P+ +TY  +  G   S   +E    L         KK+RS    P + T   ++
Sbjct: 258 VKNGVMPDCMTYNSILHGYCSSGQPKEAIGFL---------KKMRSDGVEPDVVTYSLLM 308

Query: 389 EIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVK--AKINDPNLLRRMILGGAR 446
           +   + G    A  +F+ + K         Y TL++ Y    A +    LL  M+  G  
Sbjct: 309 DYLCKNGRCMEARKIFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIH 368

Query: 447 PDAETYSLLKLAEQFQKK 464
           PD   +S+L  A   Q K
Sbjct: 369 PDHYVFSILICAYAKQGK 386



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 70/318 (22%), Positives = 133/318 (41%), Gaps = 30/318 (9%)

Query: 151 NILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSY-CILATA 209
            +L  M  + + P    F IL+   A    ++  M V+S M++  + PN V+Y  ++   
Sbjct: 357 GLLDLMVRNGIHPDHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPNAVTYGAVIGIL 416

Query: 210 HAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELP-NVR 268
               R+      + + +++ ++  N        I+Y  L  G      W   +EL   + 
Sbjct: 417 CKSGRVEDAMLYFEQMIDEGLSPGN--------IVYNSLIHGLCTCNKWERAEELILEML 468

Query: 269 SKSYVLAIEAFGRI-------AQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFID 321
            +   L    F  I        +V  +E+L+  M  +        YN++I+ YC  G +D
Sbjct: 469 DRGICLNTIFFNSIIDSHCKEGRVIESEKLFELMVRIGVKPNVITYNTLINGYCLAGKMD 528

Query: 322 KASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSS--TP 379
           +A  LL  M   G KPN +TY  L  G  K + +E+          L+  K++ SS  +P
Sbjct: 529 EAMKLLSGMVSVGLKPNTVTYSTLINGYCKISRMEDA---------LVLFKEMESSGVSP 579

Query: 380 WLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKINDPNL--L 437
            + T   I++   +      A+ L+  + ++        YN ++    K K+ D  L   
Sbjct: 580 DIITYNIILQGLFQTRRTAAAKELYVRITESGTQIELSTYNIILHGLCKNKLTDDALQMF 639

Query: 438 RRMILGGARPDAETYSLL 455
           + + L   + +A T++++
Sbjct: 640 QNLCLMDLKLEARTFNIM 657



 Score = 51.6 bits (122), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 38/135 (28%), Positives = 62/135 (45%), Gaps = 6/135 (4%)

Query: 321 DKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPW 380
           D    +L+ M+  GC PN  +Y  L  G    N  +E   ALEL + ++   +   S P 
Sbjct: 140 DAMDIVLRRMTELGCIPNVFSYNILLKGLCDENRSQE---ALEL-LHMMADDRGGGSPPD 195

Query: 381 LETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKINDPNL--LR 438
           + +  ++I  F ++GD   A + + E+           YN++I A  KA+  D  +  L 
Sbjct: 196 VVSYTTVINGFFKEGDSDKAYSTYHEMLDRGILPDVVTYNSIIAALCKAQAMDKAMEVLN 255

Query: 439 RMILGGARPDAETYS 453
            M+  G  PD  TY+
Sbjct: 256 TMVKNGVMPDCMTYN 270



 Score = 43.5 bits (101), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 58/270 (21%), Positives = 104/270 (38%), Gaps = 15/270 (5%)

Query: 96  LLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQ 155
           ++YN+L+         + + E + +M   G  ++ + FN +I  +   GR      +   
Sbjct: 442 IVYNSLIHGLCTCNKWERAEELILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFEL 501

Query: 156 MKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARL 215
           M    V P+V T++ L+        ++  MK+ S M    ++PN V+Y  L   +     
Sbjct: 502 MVRIGVKPNVITYNTLINGYCLAGKMDEAMKLLSGMVSVGLKPNTVTYSTLINGYCKISR 561

Query: 216 YTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQEL--------PNV 267
              A    + +E S    +       II Y  + +G    R  A  +EL          +
Sbjct: 562 MEDALVLFKEMESSGVSPD-------IITYNIILQGLFQTRRTAAAKELYVRITESGTQI 614

Query: 268 RSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLL 327
              +Y + +    +      A +++  +  +        +N +I    K G  D+A  L 
Sbjct: 615 ELSTYNIILHGLCKNKLTDDALQMFQNLCLMDLKLEARTFNIMIDALLKVGRNDEAKDLF 674

Query: 328 KEMSMNGCKPNAITYRHLALGCFKSNLVEE 357
              S NG  PN  TYR +A       L+EE
Sbjct: 675 VAFSSNGLVPNYWTYRLMAENIIGQGLLEE 704



 Score = 42.4 bits (98), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 53/251 (21%), Positives = 107/251 (42%), Gaps = 9/251 (3%)

Query: 94  NELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNIL 153
           N + +N+++ +   +G +  S +  + M  +G   + + +N LI      G+      +L
Sbjct: 475 NTIFFNSIIDSHCKEGRVIESEKLFELMVRIGVKPNVITYNTLINGYCLAGKMDEAMKLL 534

Query: 154 RQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSY-CILATAHAV 212
             M +  + P+  T+  L+        +E  + ++ +M+ S V P+ ++Y  IL      
Sbjct: 535 SGMVSVGLKPNTVTYSTLINGYCKISRMEDALVLFKEMESSGVSPDIITYNIILQGLFQT 594

Query: 213 ARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELP----NVR 268
            R     E YV   E S T    ST +  IIL+G L K K  +      Q L      + 
Sbjct: 595 RRTAAAKELYVRITE-SGTQIELSTYN--IILHG-LCKNKLTDDALQMFQNLCLMDLKLE 650

Query: 269 SKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLK 328
           ++++ + I+A  ++ +   A++L++   S   +     Y  +       G +++   L  
Sbjct: 651 ARTFNIMIDALLKVGRNDEAKDLFVAFSSNGLVPNYWTYRLMAENIIGQGLLEELDQLFL 710

Query: 329 EMSMNGCKPNA 339
            M  NGC  ++
Sbjct: 711 SMEDNGCTVDS 721


>gi|357111163|ref|XP_003557384.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g41720-like [Brachypodium distachyon]
          Length = 821

 Score = 73.2 bits (178), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 101/473 (21%), Positives = 167/473 (35%), Gaps = 64/473 (13%)

Query: 4   LPRGEP--VGSAFQSWM----REGFPVHRGEIFHSINRLRKLQLNKRALEVMEWVIRERP 57
           LPR E   V +    W     R  FP+    +   I     LQ    A+ V  W+  +  
Sbjct: 98  LPRAEAHAVDAVLNCWAGRFARRNFPL----LIREITFAGSLQ---HAVHVFRWMKNQEN 150

Query: 58  YRPKELDYSYLLEFTIKNHGISQGEKLF-------CCIPKDYQNELL------------- 97
           Y  +   Y  ++    ++  I Q   LF       C    D  N L+             
Sbjct: 151 YCARNDIYGMMIRLHARHSQIDQARGLFFEMQEWRCKPDADIYNSLIHAHARAGQWRWAI 210

Query: 98  -----------------YNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILN 140
                            YNN++ AC   G  K +LE  KKM   G     +  N ++   
Sbjct: 211 NIMDDMLRAAIPPSRTTYNNVINACGAAGNWKKALELCKKMTRNGVGPDLVTHNIVLSAF 270

Query: 141 SSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDM--KRSEVEP 198
            +  +          MK   +AP   T +I++     D      +++ + M  KR++  P
Sbjct: 271 KNGSQYSKAIAYFEMMKGANIAPDTFTLNIVIHCLVKDGQYGEAIELLNSMREKRTQCPP 330

Query: 199 NEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIW 258
           + V+Y  +  ++ V       +   + +       N  + + L+  Y       D   I+
Sbjct: 331 DVVTYTSIMHSYYVCGKVEDCKAVFDMMVAEGVKPNIVSYNALLGAYASRGMHADALGIF 390

Query: 259 ATVQE---LPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYC 315
             +++    P+V   SY   + A+GR  Q  +A E + EM+          YN++I  Y 
Sbjct: 391 KLLKQNGLRPDV--VSYTTLLNAYGRSGQPEKAREAFKEMRKNSCRPNIVSYNALIDAYG 448

Query: 316 KNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVR 375
             G   +A  LL EM  +G  P+ ++   L   C +   + +    LE         K R
Sbjct: 449 SAGMFKEAISLLHEMEKDGIPPDVVSISTLLTACGRCRQITKIDTILE-------AAKSR 501

Query: 376 SSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVK 428
                +    S I  +   GD G A  L+  +  +N       YN LI    K
Sbjct: 502 GIKLNIVCYNSGIGSYLNFGDYGKALELYAVMMASNVNPDAVTYNILISGLCK 554



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 88/361 (24%), Positives = 157/361 (43%), Gaps = 23/361 (6%)

Query: 100 NLVIACLDK-GVIKLSLEYMKKMRVLGHSISYLVFNRLIILNS--SPGRRKTIPNILRQM 156
           N+VI CL K G    ++E +  MR         V     I++S    G+ +    +   M
Sbjct: 299 NIVIHCLVKDGQYGEAIELLNSMREKRTQCPPDVVTYTSIMHSYYVCGKVEDCKAVFDMM 358

Query: 157 KADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLY 216
            A+ V P++ +++ L+   A+       + ++  +K++ + P+ VSY  L  A+  +   
Sbjct: 359 VAEGVKPNIVSYNALLGAYASRGMHADALGIFKLLKQNGLRPDVVSYTTLLNAYGRSGQP 418

Query: 217 TVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQE---LPNVRSKSYV 273
             A    + + K+    N  + + LI  YG     K+   +   +++    P+V S S +
Sbjct: 419 EKAREAFKEMRKNSCRPNIVSYNALIDAYGSAGMFKEAISLLHEMEKDGIPPDVVSISTL 478

Query: 274 LAIEAFGRIAQVSRAEELWLEMQSVKQLKAT-EQYNSVISVYCKNGFIDKASGLLKEMSM 332
           L   A GR  Q+++ + + LE    + +K     YNS I  Y   G   KA  L   M  
Sbjct: 479 LT--ACGRCRQITKIDTI-LEAAKSRGIKLNIVCYNSGIGSYLNFGDYGKALELYAVMMA 535

Query: 333 NGCKPNAITYRHLALGCFKSNLVEEGFKALE--LGMKLITTKKVRSSTPWLETTLSIIEI 390
           +   P+A+TY  L  G  K     E  K  E  + +++  TK+V S         S+I  
Sbjct: 536 SNVNPDAVTYNILISGLCKVGKYAESLKFFEDMVDLRIPLTKEVYS---------SLICS 586

Query: 391 FAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVK--AKINDPNLLRRMILGGARPD 448
           + ++G +  AE+ F  +K++        Y  +I+AY    +  N  +L + M     +PD
Sbjct: 587 YVKQGKLTEAESTFSSMKESGCLPDVLTYTAMIEAYNDDGSWRNAWDLFKEMEGNTVQPD 646

Query: 449 A 449
           A
Sbjct: 647 A 647



 Score = 59.3 bits (142), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 72/330 (21%), Positives = 132/330 (40%), Gaps = 43/330 (13%)

Query: 132 VFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDM 191
           ++N LI  ++  G+ +   NI+  M    + P  +T++ ++       N +  +++   M
Sbjct: 192 IYNSLIHAHARAGQWRWAINIMDDMLRAAIPPSRTTYNNVINACGAAGNWKKALELCKKM 251

Query: 192 KRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKG 251
            R+ V P+ V++ I+ +A      Y+ A  Y E ++ +    +  TL+++I         
Sbjct: 252 TRNGVGPDLVTHNIVLSAFKNGSQYSKAIAYFEMMKGANIAPDTFTLNIVIHCL------ 305

Query: 252 KDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVI 311
                          V+   Y  AIE    + +           +  +       Y S++
Sbjct: 306 ---------------VKDGQYGEAIELLNSMRE-----------KRTQCPPDVVTYTSIM 339

Query: 312 SVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGM-KLIT 370
             Y   G ++    +   M   G KPN ++Y  L LG + S     G  A  LG+ KL+ 
Sbjct: 340 HSYYVCGKVEDCKAVFDMMVAEGVKPNIVSYNAL-LGAYAS----RGMHADALGIFKLLK 394

Query: 371 TKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAK 430
              +R   P + +  +++  +   G    A   F+E++K +       YN LI AY  A 
Sbjct: 395 QNGLR---PDVVSYTTLLNAYGRSGQPEKAREAFKEMRKNSCRPNIVSYNALIDAYGSAG 451

Query: 431 I--NDPNLLRRMILGGARPDAETYSLLKLA 458
           +     +LL  M   G  PD  + S L  A
Sbjct: 452 MFKEAISLLHEMEKDGIPPDVVSISTLLTA 481



 Score = 55.1 bits (131), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 51/250 (20%), Positives = 108/250 (43%), Gaps = 1/250 (0%)

Query: 94  NELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNIL 153
           N + YN L+ A   +G+   +L   K ++  G     + +  L+      G+ +      
Sbjct: 366 NIVSYNALLGAYASRGMHADALGIFKLLKQNGLRPDVVSYTTLLNAYGRSGQPEKAREAF 425

Query: 154 RQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVA 213
           ++M+ +   P++ +++ L+    +    +  + +  +M++  + P+ VS   L TA    
Sbjct: 426 KEMRKNSCRPNIVSYNALIDAYGSAGMFKEAISLLHEMEKDGIPPDVVSISTLLTACGRC 485

Query: 214 RLYTVAETYVEALEKSMTGNNWSTLDVLIILY-GYLAKGKDLERIWATVQELPNVRSKSY 272
           R  T  +T +EA +      N    +  I  Y  +   GK LE     +    N  + +Y
Sbjct: 486 RQITKIDTILEAAKSRGIKLNIVCYNSGIGSYLNFGDYGKALELYAVMMASNVNPDAVTY 545

Query: 273 VLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSM 332
            + I    ++ + + + + + +M  ++     E Y+S+I  Y K G + +A      M  
Sbjct: 546 NILISGLCKVGKYAESLKFFEDMVDLRIPLTKEVYSSLICSYVKQGKLTEAESTFSSMKE 605

Query: 333 NGCKPNAITY 342
           +GC P+ +TY
Sbjct: 606 SGCLPDVLTY 615



 Score = 39.3 bits (90), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 62/275 (22%), Positives = 110/275 (40%), Gaps = 15/275 (5%)

Query: 98  YNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMK 157
           Y  L+ A    G  + + E  K+MR      + + +N LI    S G  K   ++L +M+
Sbjct: 405 YTTLLNAYGRSGQPEKAREAFKEMRKNSCRPNIVSYNALIDAYGSAGMFKEAISLLHEME 464

Query: 158 ADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYT 217
            D + P V +   L+        I  +  +    K   ++ N V Y      ++    Y 
Sbjct: 465 KDGIPPDVVSISTLLTACGRCRQITKIDTILEAAKSRGIKLNIVCY------NSGIGSYL 518

Query: 218 VAETYVEALE---KSMTGN-NWSTLDVLIILYGYLAKGKDLERIWATVQELPNVR----S 269
               Y +ALE     M  N N   +   I++ G    GK  E +    +++ ++R     
Sbjct: 519 NFGDYGKALELYAVMMASNVNPDAVTYNILISGLCKVGKYAESL-KFFEDMVDLRIPLTK 577

Query: 270 KSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKE 329
           + Y   I ++ +  +++ AE  +  M+    L     Y ++I  Y  +G    A  L KE
Sbjct: 578 EVYSSLICSYVKQGKLTEAESTFSSMKESGCLPDVLTYTAMIEAYNDDGSWRNAWDLFKE 637

Query: 330 MSMNGCKPNAITYRHLALGCFKSNLVEEGFKALEL 364
           M  N  +P+AI    L     + +  E   + +EL
Sbjct: 638 MEGNTVQPDAIICSSLMEALNRGSQHERVLQLMEL 672


>gi|302766812|ref|XP_002966826.1| hypothetical protein SELMODRAFT_11024 [Selaginella moellendorffii]
 gi|300164817|gb|EFJ31425.1| hypothetical protein SELMODRAFT_11024 [Selaginella moellendorffii]
          Length = 484

 Score = 73.2 bits (178), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 74/323 (22%), Positives = 142/323 (43%), Gaps = 27/323 (8%)

Query: 152 ILRQMKA-DKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAH 210
           +L+QM+  D +AP    F+ ++    N+  +E  M+V  +M++    P   +Y  L   +
Sbjct: 73  LLKQMEEEDGLAPDSVCFNTVINGWCNEGQMEEAMRVVQEMRQKNCRPTTSTYNTLIKGY 132

Query: 211 AVARLYTVAETYVEALEKSMTGNNWSTLDVL------------IILYGYLAKGKDLERIW 258
            VA     A+  V  L  + T N+ S+ D L             +L  +  +G+ LE  W
Sbjct: 133 GVAGQAEQAQQLVLHL-LNKTRNSPSSEDGLEPVARPNLRTMNTLLNAWCREGR-LEEAW 190

Query: 259 ATVQELPNVRSK----SYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVY 314
             V  + +   +    +Y    +A+    +V+  E+L  +M++ +       Y  +IS Y
Sbjct: 191 RVVAMIKSAGMQPDAVTYNTLAKAYAAAGRVAELEDLIADMKNARLKPNLRTYAILISCY 250

Query: 315 CKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKV 374
           C+NG  ++   LL  +   G  P+ + +  L  G  + N  ++  K LE+ + L+    V
Sbjct: 251 CQNGMPERGLQLLSRLKFEGLHPDVVAFNTLLKGYSQEN--DQQLK-LEMVLDLMAANGV 307

Query: 375 RSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKIND- 433
           R   P + T  +I+  ++  G    A+ +  E+++         +  L K YV++     
Sbjct: 308 R---PDVTTYSTIMNWWSSAGMADKAQTILLEMQQDRVKPDVRAFAILAKGYVRSGRTHE 364

Query: 434 -PNLLRRMILGGARPDAETYSLL 455
             +LL+ M L G  P+   Y+ +
Sbjct: 365 AESLLQDMSLHGVAPNVVVYTTI 387



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 56/262 (21%), Positives = 110/262 (41%), Gaps = 29/262 (11%)

Query: 144 GRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSY 203
           GR +    ++  +K+  + P   T++ L K  A    +  L  + +DMK + ++PN  +Y
Sbjct: 184 GRLEEAWRVVAMIKSAGMQPDAVTYNTLAKAYAAAGRVAELEDLIADMKNARLKPNLRTY 243

Query: 204 CILATAHAV-----ARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIW 258
            IL + +         L  ++    E L   +   N        +L GY ++  D +   
Sbjct: 244 AILISCYCQNGMPERGLQLLSRLKFEGLHPDVVAFN-------TLLKGY-SQENDQQLKL 295

Query: 259 ATVQEL-------PNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVI 311
             V +L       P+V + S ++    +       +A+ + LEMQ  +       +  + 
Sbjct: 296 EMVLDLMAANGVRPDVTTYSTIM--NWWSSAGMADKAQTILLEMQQDRVKPDVRAFAILA 353

Query: 312 SVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITT 371
             Y ++G   +A  LL++MS++G  PN + Y  +  G      +++  + LEL ++    
Sbjct: 354 KGYVRSGRTHEAESLLQDMSLHGVAPNVVVYTTIISGWCSMGRMDDALRVLELMLE---- 409

Query: 372 KKVRSSTPWLETTLSIIEIFAE 393
              R   P L T  +++  F E
Sbjct: 410 ---RGEAPNLNTVQTLVWGFCE 428


>gi|357450749|ref|XP_003595651.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355484699|gb|AES65902.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 785

 Score = 72.8 bits (177), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 84/322 (26%), Positives = 144/322 (44%), Gaps = 33/322 (10%)

Query: 128 ISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKV 187
           ++Y +FN LI  +S  G  K      R M    V P+V+TF +LM++   + N+E    V
Sbjct: 83  LTYQIFNTLIYASSKRGLVKLTSKWFRMMLDCNVTPNVATFGMLMRLYQKNWNVEEAEFV 142

Query: 188 YSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKS---MTGNNWSTLDVLIIL 244
            S MKR  V   E +Y  + T +    LY  AE+ VE +EK    +   NW     L+IL
Sbjct: 143 MSHMKRFSV-VCESAYSSMITIYTRLGLYAKAESVVELMEKEVMVLNVENW-----LVIL 196

Query: 245 YGYLAKGK--DLERIWATVQELPNVRSKSYVL---AIEAFGRIAQVSRAEELWLEMQSVK 299
             Y  +GK  + ER+ A ++E      ++ V+    I  +G+ + +  AE ++L +    
Sbjct: 197 NLYCQQGKMVEAERVLAIMEEEAGFCVENIVVYNTMITGYGKASNMDGAESVFLRLGGRI 256

Query: 300 QLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAIT-YRHLALGCFKSNLVEEG 358
           +   T  Y S+I  + + G  +KA    +E+   G KP++   +  + L   + +L    
Sbjct: 257 EPDET-SYRSMIEGWGRAGNYEKARWYYEELKRLGFKPSSSNLFTMIKLQANEDDLD--- 312

Query: 359 FKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFV 418
                 G+       VR    +     +++ ++   G V     L     K ++ +Y  V
Sbjct: 313 ------GVVGTLDDMVRCGCHYSSIIGTLVSVYERAGKVYELPRLL----KGSFYRYILV 362

Query: 419 ----YNTLIKAYVKAKINDPNL 436
                +T++ AYVK K+ D  L
Sbjct: 363 NQSCCSTVVMAYVKNKLVDDAL 384



 Score = 52.4 bits (124), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 61/302 (20%), Positives = 119/302 (39%), Gaps = 46/302 (15%)

Query: 157 KADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSY-CILATAHAVARL 215
           K   + P V     +++I    + ++ L +VY  + +  +  ++  Y C++        +
Sbjct: 502 KRPDIVPDVFLLRDMLRIYQRRNMVDKLAQVYYKILKDRLNWDQEFYNCVINCCARALPI 561

Query: 216 YTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSKSYVLA 275
             ++  + E L++    N + T +V++ ++G     K + R++   ++   V   +Y   
Sbjct: 562 DELSRLFDEMLQRGFMPNTF-TYNVMLNVFGKAKLFKKVRRLYFMAKKQGLVDVITYNTI 620

Query: 276 IEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGC 335
           I+++G+            +MQ      + E YNS++  Y K+  +D    +LK M  + C
Sbjct: 621 IDSYGKKKDFRNMSRTVRKMQFDGFSVSLEAYNSMLDAYGKDSQMDAFRSVLKMMKESNC 680

Query: 336 KPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKG 395
             +  TY          N+V                                I I+ E+G
Sbjct: 681 ASDLYTY----------NIV--------------------------------INIYGEQG 698

Query: 396 DVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKINDP--NLLRRMILGGARPDAETYS 453
            +    ++  EL +         YNTLIKAY  A + +    L++ M   G  PD  TY+
Sbjct: 699 WIEEVSDVLAELNECGLRPDLCSYNTLIKAYGIAGMVEEAVELIKEMRKNGIEPDQTTYT 758

Query: 454 LL 455
            L
Sbjct: 759 NL 760



 Score = 40.8 bits (94), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 34/176 (19%), Positives = 77/176 (43%), Gaps = 1/176 (0%)

Query: 55  ERPYRPKELDYSYLLEFTIKNHGISQGEKLFCCIPKDYQNELL-YNNLVIACLDKGVIKL 113
           +R + P    Y+ +L    K     +  +L+    K    +++ YN ++ +   K   + 
Sbjct: 573 QRGFMPNTFTYNVMLNVFGKAKLFKKVRRLYFMAKKQGLVDVITYNTIIDSYGKKKDFRN 632

Query: 114 SLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMK 173
               ++KM+  G S+S   +N ++       +     ++L+ MK    A  + T++I++ 
Sbjct: 633 MSRTVRKMQFDGFSVSLEAYNSMLDAYGKDSQMDAFRSVLKMMKESNCASDLYTYNIVIN 692

Query: 174 IEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKS 229
           I      IE +  V +++    + P+  SY  L  A+ +A +   A   ++ + K+
Sbjct: 693 IYGEQGWIEEVSDVLAELNECGLRPDLCSYNTLIKAYGIAGMVEEAVELIKEMRKN 748


>gi|225434476|ref|XP_002278184.1| PREDICTED: pentatricopeptide repeat-containing protein At3g09060
           [Vitis vinifera]
          Length = 691

 Score = 72.8 bits (177), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 96/432 (22%), Positives = 189/432 (43%), Gaps = 30/432 (6%)

Query: 37  RKLQLNKRALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQGEKLFCCIPKD--YQN 94
           RK Q +K A E++ W + E+ + P    Y  L+    KN  +S   KLF  +P+     +
Sbjct: 161 RKKQFDK-AKELLNW-MWEQGFSPDVFSYGTLINSLAKNGYMSDALKLFDEMPERGVTPD 218

Query: 95  ELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNS--SPGRRKTIPNI 152
              YN L+     KG I  + E  +++ + G S+   + +  +++N     G+      I
Sbjct: 219 VACYNILIDGFFKKGDILNASEIWERL-LKGPSVYPNIPSYNVMINGLCKCGKFDESFEI 277

Query: 153 LRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAV 212
             +MK ++    + T+  L+       N++G  +VY +M  + V P+ V Y  +   +  
Sbjct: 278 WHRMKKNERGQDLYTYSTLIHGLCGSGNLDGATRVYKEMAENGVSPDVVVYNTMLNGYLR 337

Query: 213 A-RLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYL--AKGKDLERIWATVQELPNV-R 268
           A R+    E + + +EK       + +   I++ G    AK  +   IW  + E      
Sbjct: 338 AGRIEECLELW-KVMEKEGCR---TVVSYNILIRGLFENAKVDEAISIWELLPEKDCCAD 393

Query: 269 SKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLK 328
           S +Y + +    +   +++A  +  E ++ +    T  Y+S+I+  C+ G +D+ +G+L 
Sbjct: 394 SMTYGVLVHGLCKNGYLNKALSILEEAENGRGDLDTFAYSSMINGLCREGRLDEVAGVLD 453

Query: 329 EMSMNGCKPNAITYRHLALGCFKSNLVEEGF---KALELGMKLITTKKVRSSTPWLETTL 385
           +M+ +GCKPN     H+       N V  GF     LE  ++       +   P + T  
Sbjct: 454 QMTKHGCKPNP----HVC------NAVINGFVRASKLEDALRFFGNMVSKGCFPTVVTYN 503

Query: 386 SIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKINDP--NLLRRMILG 443
           ++I   ++      A  L +E+    +      Y+ L+    + K  D   NL  + +  
Sbjct: 504 TLINGLSKAERFSEAYALVKEMLHKGWKPNMITYSLLMNGLCQGKKLDMALNLWCQALEK 563

Query: 444 GARPDAETYSLL 455
           G +PD + ++++
Sbjct: 564 GFKPDVKMHNII 575



 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 68/325 (20%), Positives = 137/325 (42%), Gaps = 43/325 (13%)

Query: 161 VAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAE 220
           ++P++ T++IL+KI       +   ++ + M      P+  SY  L  + A     + A 
Sbjct: 145 LSPNLQTYNILIKISCRKKQFDKAKELLNWMWEQGFSPDVFSYGTLINSLAKNGYMSDAL 204

Query: 221 TYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDL--ERIWATVQELPNVRSK--SYVLAI 276
              + + +     + +  ++LI   G+  KG  L    IW  + + P+V     SY + I
Sbjct: 205 KLFDEMPERGVTPDVACYNILID--GFFKKGDILNASEIWERLLKGPSVYPNIPSYNVMI 262

Query: 277 EAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCK 336
               +  +   + E+W  M+  ++ +    Y+++I   C +G +D A+ + KEM+ NG  
Sbjct: 263 NGLCKCGKFDESFEIWHRMKKNERGQDLYTYSTLIHGLCGSGNLDGATRVYKEMAENGVS 322

Query: 337 PNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPW------------LETT 384
           P+ + Y  +  G  ++  +EE    LEL  K++  +  R+   +            ++  
Sbjct: 323 PDVVVYNTMLNGYLRAGRIEE---CLEL-WKVMEKEGCRTVVSYNILIRGLFENAKVDEA 378

Query: 385 LSIIEIFAEK-------------------GDVGNAENLFEELKKANYTKYTFVYNTLIKA 425
           +SI E+  EK                   G +  A ++ EE +       TF Y+++I  
Sbjct: 379 ISIWELLPEKDCCADSMTYGVLVHGLCKNGYLNKALSILEEAENGRGDLDTFAYSSMING 438

Query: 426 YVKAKIND--PNLLRRMILGGARPD 448
             +    D    +L +M   G +P+
Sbjct: 439 LCREGRLDEVAGVLDQMTKHGCKPN 463



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 44/166 (26%), Positives = 72/166 (43%), Gaps = 14/166 (8%)

Query: 265 PNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKAS 324
           P +RS + +L   A     +   AE  +L  +++      + YN +I + C+    DKA 
Sbjct: 112 PGIRSYNSLL--NALIESNKWDEAESFFLYFETMGLSPNLQTYNILIKISCRKKQFDKAK 169

Query: 325 GLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETT 384
            LL  M   G  P+  +Y     G   ++L + G+  +   +KL      R  TP +   
Sbjct: 170 ELLNWMWEQGFSPDVFSY-----GTLINSLAKNGY--MSDALKLFDEMPERGVTPDVACY 222

Query: 385 LSIIEIFAEKGDVGNAENLFEELKKA-----NYTKYTFVYNTLIKA 425
             +I+ F +KGD+ NA  ++E L K      N   Y  + N L K 
Sbjct: 223 NILIDGFFKKGDILNASEIWERLLKGPSVYPNIPSYNVMINGLCKC 268



 Score = 40.0 bits (92), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 43/200 (21%), Positives = 82/200 (41%), Gaps = 17/200 (8%)

Query: 155 QMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVAR 214
            M +    P V T++ L+   +          +  +M     +PN ++Y +L       +
Sbjct: 489 NMVSKGCFPTVVTYNTLINGLSKAERFSEAYALVKEMLHKGWKPNMITYSLLMNGLCQGK 548

Query: 215 LYTVA-ETYVEALEKSMTGNNWSTLDVL---IILYGYLAKGK--DLERIWATVQE---LP 265
              +A   + +ALEK          DV    II++G  + GK  D  ++++ +++   +P
Sbjct: 549 KLDMALNLWCQALEKGFKP------DVKMHNIIIHGLCSSGKVEDALQLYSEMKQRKCVP 602

Query: 266 NVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASG 325
           N+ + + ++  E F ++    RA ++W  +           YN  +   C    I  A G
Sbjct: 603 NLVTHNTLM--EGFYKVRDFERASKIWDHILQYGPQPDIISYNITLKGLCSCHRISDAVG 660

Query: 326 LLKEMSMNGCKPNAITYRHL 345
            L +    G  P AIT+  L
Sbjct: 661 FLNDAVDRGVLPTAITWNIL 680


>gi|242069877|ref|XP_002450215.1| hypothetical protein SORBIDRAFT_05g002040 [Sorghum bicolor]
 gi|241936058|gb|EES09203.1| hypothetical protein SORBIDRAFT_05g002040 [Sorghum bicolor]
          Length = 862

 Score = 72.8 bits (177), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 104/428 (24%), Positives = 168/428 (39%), Gaps = 30/428 (7%)

Query: 46  LEVMEW--VIRE------RPYRPKELDYSYLLEFTIKNHGISQGEKLF-CCIPKDYQ-NE 95
           L   EW  V+R       R   P  + YS LL++  KN   ++  K+F C I K  + N 
Sbjct: 350 LSTGEWKEVVRRLEEMYARGLDPDVVTYSLLLDYLCKNGKCTEARKIFYCMIRKGIKPNV 409

Query: 96  LLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQ 155
            +Y  L+     +G I    + +  M   G S +  +FN ++   +         +I  +
Sbjct: 410 TIYGILLHGYAARGAIADLTDLLDLMVANGISPNNYIFNIVLCAYAKKAMIDEAMHIFSR 469

Query: 156 MKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATA-HAVAR 214
           M    ++P V T+ IL+        ++  +  ++ M    V PN V +  L      V R
Sbjct: 470 MSQHGLSPDVVTYGILIDALCKLGRVDDAVLKFNQMINDGVTPNSVVFNSLVYGLCTVDR 529

Query: 215 LYTVAETYVEALEKSMTGNN--WSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSKSY 272
                E + E  ++ +  N   ++T+   +   G +   + L      V   PNV   SY
Sbjct: 530 WEKAEELFFEMWDQGVRPNVVFFNTIMCNLCNEGQVMVAQRLIDSMERVGVRPNV--ISY 587

Query: 273 VLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSM 332
              I       +   A +L   M SV        Y++++  YCK G ID A  L +EM  
Sbjct: 588 NTLIGGHCLAGRTDEAAQLLDVMVSVGLKPDLISYDTLLRGYCKTGRIDNAYCLFREMLR 647

Query: 333 NGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSII-EIF 391
            G  P A+TY  +  G F +    E  K L L M       ++S   W   T +II    
Sbjct: 648 KGVTPGAVTYSTILQGLFHTRRFSEA-KELYLNM-------IKSGQQWDIYTYNIILNGL 699

Query: 392 AEKGDVGNAENLFEELK----KANYTKYTFVYNTLIKAYVKAKINDPNLLRRMILGGARP 447
            +   V  A  +F+ L     + N   +T + + L K   K    D  L   +   G  P
Sbjct: 700 CKTNCVDEAFKIFQSLCSKDLRPNIITFTIMIDVLFKGGRKKDAMD--LFASIPSHGLVP 757

Query: 448 DAETYSLL 455
           +  TY ++
Sbjct: 758 NVVTYCIM 765



 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 99/439 (22%), Positives = 186/439 (42%), Gaps = 35/439 (7%)

Query: 33  INRLRKLQLNKRALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQGEKLF-CCIPKD 91
           I+ L K Q   RA  V++ +I ++  +P  + Y+ +++   K   + + E +    I K 
Sbjct: 241 IDGLCKAQAVDRAEGVLQHMI-DKGVKPDVVTYNTIIDGLCKAQAVDRAEGVLQHMIDKG 299

Query: 92  YQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLV------FNRLIILNSSPGR 145
            + +++  N +I  L K     +    +   VL H I   V      +N LI    S G 
Sbjct: 300 VKPDVVTYNTIIDGLCK-----AQAVDRADGVLQHMIDKDVKPDIQTYNCLIHGYLSTGE 354

Query: 146 RKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCI 205
            K +   L +M A  + P V T+ +L+     +       K++  M R  ++PN   Y I
Sbjct: 355 WKEVVRRLEEMYARGLDPDVVTYSLLLDYLCKNGKCTEARKIFYCMIRKGIKPNVTIYGI 414

Query: 206 L----ATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATV 261
           L    A   A+A L  + +  V      ++ NN+   ++++  Y   A   +   I++ +
Sbjct: 415 LLHGYAARGAIADLTDLLDLMV---ANGISPNNY-IFNIVLCAYAKKAMIDEAMHIFSRM 470

Query: 262 QE---LPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNG 318
            +    P+V   +Y + I+A  ++ +V  A   + +M +      +  +NS++   C   
Sbjct: 471 SQHGLSPDV--VTYGILIDALCKLGRVDDAVLKFNQMINDGVTPNSVVFNSLVYGLCTVD 528

Query: 319 FIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSST 378
             +KA  L  EM   G +PN + +  +       NL  EG   + +  +LI + +     
Sbjct: 529 RWEKAEELFFEMWDQGVRPNVVFFNTIM-----CNLCNEG--QVMVAQRLIDSMERVGVR 581

Query: 379 PWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVK-AKINDP-NL 436
           P + +  ++I      G    A  L + +           Y+TL++ Y K  +I++   L
Sbjct: 582 PNVISYNTLIGGHCLAGRTDEAAQLLDVMVSVGLKPDLISYDTLLRGYCKTGRIDNAYCL 641

Query: 437 LRRMILGGARPDAETYSLL 455
            R M+  G  P A TYS +
Sbjct: 642 FREMLRKGVTPGAVTYSTI 660



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 53/197 (26%), Positives = 87/197 (44%), Gaps = 14/197 (7%)

Query: 264 LPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQ---YNSVISVYCKNGFI 320
           +PNV S + +L  +      +V  A EL   M        T     YN++I   CK   +
Sbjct: 158 MPNVVSCNTLL--KGLCNEKRVEEALELLHTMAEDGGGNCTPNVVTYNTIIDGLCKAQAV 215

Query: 321 DKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPW 380
           D+A G+L+ M   G K + +TY  +  G  K+  V+      E  ++ +  K V+   P 
Sbjct: 216 DRAEGVLQHMIDKGVKLDVVTYSTIIDGLCKAQAVDRA----EGVLQHMIDKGVK---PD 268

Query: 381 LETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKIND--PNLLR 438
           + T  +II+   +   V  AE + + +           YNT+I    KA+  D    +L+
Sbjct: 269 VVTYNTIIDGLCKAQAVDRAEGVLQHMIDKGVKPDVVTYNTIIDGLCKAQAVDRADGVLQ 328

Query: 439 RMILGGARPDAETYSLL 455
            MI    +PD +TY+ L
Sbjct: 329 HMIDKDVKPDIQTYNCL 345



 Score = 50.8 bits (120), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 65/309 (21%), Positives = 116/309 (37%), Gaps = 46/309 (14%)

Query: 152 ILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRS---EVEPNEVSYCILAT 208
           +LR+M      P+V + + L+K   N+  +E  +++   M         PN V+Y     
Sbjct: 148 LLRRMPEFGCMPNVVSCNTLLKGLCNEKRVEEALELLHTMAEDGGGNCTPNVVTY----- 202

Query: 209 AHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVR 268
                       T ++ L K+   +         +L   + KG  L+ +           
Sbjct: 203 -----------NTIIDGLCKAQAVDRAEG-----VLQHMIDKGVKLDVV----------- 235

Query: 269 SKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLK 328
             +Y   I+   +   V RAE +   M           YN++I   CK   +D+A G+L+
Sbjct: 236 --TYSTIIDGLCKAQAVDRAEGVLQHMIDKGVKPDVVTYNTIIDGLCKAQAVDRAEGVLQ 293

Query: 329 EMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSII 388
            M   G KP+ +TY  +  G  K+  V+     L+     +  K V+   P ++T   +I
Sbjct: 294 HMIDKGVKPDVVTYNTIIDGLCKAQAVDRADGVLQ----HMIDKDVK---PDIQTYNCLI 346

Query: 389 EIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVK-AKINDP-NLLRRMILGGAR 446
             +   G+        EE+           Y+ L+    K  K  +   +   MI  G +
Sbjct: 347 HGYLSTGEWKEVVRRLEEMYARGLDPDVVTYSLLLDYLCKNGKCTEARKIFYCMIRKGIK 406

Query: 447 PDAETYSLL 455
           P+   Y +L
Sbjct: 407 PNVTIYGIL 415



 Score = 49.3 bits (116), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 42/151 (27%), Positives = 68/151 (45%), Gaps = 7/151 (4%)

Query: 308 NSVISVYCKNGFIDKASG-LLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGM 366
           N +++  C    +D+A   LL+ M   GC PN ++   L  G      VEE   ALEL +
Sbjct: 129 NQLLNGLCDAKRVDEAMDILLRRMPEFGCMPNVVSCNTLLKGLCNEKRVEE---ALEL-L 184

Query: 367 KLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAY 426
             +      + TP + T  +II+   +   V  AE + + +           Y+T+I   
Sbjct: 185 HTMAEDGGGNCTPNVVTYNTIIDGLCKAQAVDRAEGVLQHMIDKGVKLDVVTYSTIIDGL 244

Query: 427 VKAKIND--PNLLRRMILGGARPDAETYSLL 455
            KA+  D    +L+ MI  G +PD  TY+ +
Sbjct: 245 CKAQAVDRAEGVLQHMIDKGVKPDVVTYNTI 275


>gi|359481971|ref|XP_003632699.1| PREDICTED: pentatricopeptide repeat-containing protein At5g12100,
           mitochondrial-like [Vitis vinifera]
          Length = 819

 Score = 72.8 bits (177), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 86/368 (23%), Positives = 157/368 (42%), Gaps = 21/368 (5%)

Query: 96  LLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQ 155
           + +N +V      G I  +   ++KM  +G   +++ +N L+         +     +++
Sbjct: 393 VFFNTIVNGYCQVGDINKAYTTIEKMEAVGLRPNHVTYNSLVKKFCEMKNMEEAEKCIKK 452

Query: 156 MKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSY-CILATAHAVAR 214
           M    V P+V T++ L+         +   ++  +M++  ++PN +SY C++      A 
Sbjct: 453 MVEKGVLPNVETYNTLIDGYGRSCLFDRCFQILEEMEKKGLKPNVISYGCLINCLCKDAN 512

Query: 215 LYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATV---QELPNVRSKS 271
           +   AE  +  +       N    ++LI       K KD  R +  +   + +P + +  
Sbjct: 513 ILE-AEVILGDMVHRGVVPNAQIYNMLIDGSCIAGKLKDAFRFFDEMVAREIVPTLVT-- 569

Query: 272 YVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMS 331
           Y + I    +  +V  AE L  E+           YNS+IS Y   G + KA  L + M 
Sbjct: 570 YNILINGLCKKGKVMEAENLASEITRKGLSFDVITYNSLISGYSSAGNVQKALELYETMK 629

Query: 332 MNGCKPNAITYRHLALGCFKSN--LVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIE 389
            +G KP   TY  L  GC K    LVE+ ++ + L M L+  + + +         ++I 
Sbjct: 630 KSGIKPTLNTYHRLIAGCGKEGLVLVEKIYQEM-LQMNLVPDRVIYN---------ALIH 679

Query: 390 IFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVK-AKIND-PNLLRRMILGGARP 447
            + E GDV  A +L   ++          YN LI  + K  +++   NL+  M + G  P
Sbjct: 680 CYVEHGDVQKACSLHSAMEAQGIQPDKMTYNCLILGHFKEGRMHKVKNLVNDMKIRGLIP 739

Query: 448 DAETYSLL 455
             ETY +L
Sbjct: 740 KTETYDIL 747



 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 84/371 (22%), Positives = 153/371 (41%), Gaps = 22/371 (5%)

Query: 94  NELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNIL 153
           ++ +Y   + A +  G +K ++E M  M+  G S    V+N +I       R K    + 
Sbjct: 181 DQFMYGKAIQAAVKLGDLKRAIELMTCMKRGGVSPGVFVYNVVIGGLCKEKRMKDAEKLF 240

Query: 154 RQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVA 213
            +M   +VAP+  T++ L+        +E    +   MK   VEP  +++  L      A
Sbjct: 241 DEMLDRRVAPNRITYNTLIDGYCKVGQLEEAFNIRERMKVENVEPTIITFNSLLNGLCRA 300

Query: 214 RLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQEL-PNVRSKSY 272
           ++   A+  +E +E  + G          +  G+L  G     I  + + +   V+   Y
Sbjct: 301 QMMEEAQRVLEEME--VYGFVPDRFTYTTLFDGHLKCGNVDASITLSEEAVRKGVQILDY 358

Query: 273 VLAI--EAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEM 330
             +I   A  +   + +AEE+  +            +N++++ YC+ G I+KA   +++M
Sbjct: 359 TCSILLNALCKEGNMEKAEEVLKKFLENGLAPVGVFFNTIVNGYCQVGDINKAYTTIEKM 418

Query: 331 SMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEI 390
              G +PN +TY  L          E   K +E   K I     +   P +ET  ++I+ 
Sbjct: 419 EAVGLRPNHVTYNSLV-----KKFCE--MKNMEEAEKCIKKMVEKGVLPNVETYNTLIDG 471

Query: 391 FAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKINDPNLLR-RMILG-----G 444
           +           + EE++K         Y  LI    K    D N+L   +ILG     G
Sbjct: 472 YGRSCLFDRCFQILEEMEKKGLKPNVISYGCLINCLCK----DANILEAEVILGDMVHRG 527

Query: 445 ARPDAETYSLL 455
             P+A+ Y++L
Sbjct: 528 VVPNAQIYNML 538



 Score = 44.3 bits (103), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 66/326 (20%), Positives = 134/326 (41%), Gaps = 20/326 (6%)

Query: 41  LNKRALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQGEKLFC------CIPKDYQN 94
           L  R  +++E  + ++  +P  + Y  L+    K+  I + E +         +P    N
Sbjct: 477 LFDRCFQILEE-MEKKGLKPNVISYGCLINCLCKDANILEAEVILGDMVHRGVVP----N 531

Query: 95  ELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILR 154
             +YN L+      G +K +  +  +M       + + +N LI      G+     N+  
Sbjct: 532 AQIYNMLIDGSCIAGKLKDAFRFFDEMVAREIVPTLVTYNILINGLCKKGKVMEAENLAS 591

Query: 155 QMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVAR 214
           ++    ++  V T++ L+   ++  N++  +++Y  MK+S ++P   +Y  L        
Sbjct: 592 EITRKGLSFDVITYNSLISGYSSAGNVQKALELYETMKKSGIKPTLNTYHRLIAGCGKEG 651

Query: 215 LYTVAETYVEALEKSMTGNN--WSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSKSY 272
           L  V + Y E L+ ++  +   ++ L    + +G + K   L          P+    +Y
Sbjct: 652 LVLVEKIYQEMLQMNLVPDRVIYNALIHCYVEHGDVQKACSLHSAMEAQGIQPD--KMTY 709

Query: 273 VLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSM 332
              I    +  ++ + + L  +M+    +  TE Y+ +I  +CK    D A    +EM  
Sbjct: 710 NCLILGHFKEGRMHKVKNLVNDMKIRGLIPKTETYDILIVGHCKLKDFDGAYVWYREMFE 769

Query: 333 NGCKPNAITYRHLALGCFKSNLVEEG 358
           NG  P+     +L  G     L EEG
Sbjct: 770 NGFTPSVSICDNLITG-----LREEG 790


>gi|326528911|dbj|BAJ97477.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 913

 Score = 72.8 bits (177), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 62/300 (20%), Positives = 127/300 (42%), Gaps = 8/300 (2%)

Query: 131 LVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSD 190
           ++++ +I  +   G       ++ +M+ D +   +  +H +M       + +  + V+  
Sbjct: 383 IIYSNIIHAHCQSGNMDRAEELVHEMEEDGIDAPIDAYHSMMHGYTIIQDEKKCLIVFER 442

Query: 191 MKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAK 250
           +K     P+ +SY  L   +        A    + +E S   +N  T  +LI  + +L  
Sbjct: 443 LKECCFTPSIISYGCLINLYVKIGKVAKAIAISKEMESSGIKHNNKTYSMLISGFIHLHD 502

Query: 251 GKDLERIWATVQELPNVRSKS-YVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNS 309
             +  RI+  + +      ++ Y L IEAF ++  + RA  +  +MQ  +   +   +  
Sbjct: 503 FTNAFRIFEEMLKSGLQPDRAIYNLLIEAFCKMGNMDRAIRILEKMQKERMQPSNRAFRP 562

Query: 310 VISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLI 369
           +I  +   G + +A  +L  M  +GC P  +TY  L  G  + N VE         + ++
Sbjct: 563 IIEGFAVAGDMKRALDILDLMRRSGCAPTVMTYNALIHGLIRKNQVER-------AVSVL 615

Query: 370 TTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKA 429
               +   TP   T   I+  +A  GD+  A   F ++K+       ++Y TL++A  K+
Sbjct: 616 NKMSIAGITPNEHTYTIIMRGYAATGDIAKAFEYFTKIKEGGLKLDVYIYETLLRACCKS 675



 Score = 71.6 bits (174), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 81/329 (24%), Positives = 139/329 (42%), Gaps = 14/329 (4%)

Query: 65  YSYLLEFTIKNHGISQGEKLFCCIPKD--YQNELLYNNLVIACLDKGVIKLSLEYMKKMR 122
           YS L+   I  H  +   ++F  + K     +  +YN L+ A    G +  ++  ++KM+
Sbjct: 490 YSMLISGFIHLHDFTNAFRIFEEMLKSGLQPDRAIYNLLIEAFCKMGNMDRAIRILEKMQ 549

Query: 123 VLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIE 182
                 S   F  +I   +  G  K   +IL  M+    AP V T++ L+      + +E
Sbjct: 550 KERMQPSNRAFRPIIEGFAVAGDMKRALDILDLMRRSGCAPTVMTYNALIHGLIRKNQVE 609

Query: 183 GLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLI 242
             + V + M  + + PNE +Y I+   +A       A  Y   +++         LDV I
Sbjct: 610 RAVSVLNKMSIAGITPNEHTYTIIMRGYAATGDIAKAFEYFTKIKEGGL-----KLDVYI 664

Query: 243 --ILYGYLAKGKDLERIWATVQELPNVR----SKSYVLAIEAFGRIAQVSRAEELWLEMQ 296
              L     K   ++   A  +E+ + +    +  Y + I+ + R   V  A +L  +M+
Sbjct: 665 YETLLRACCKSGRMQSALAVTREMSSQKIARNTFVYNILIDGWARRGDVWEAADLMKQMK 724

Query: 297 SVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVE 356
                     Y S I+  CK G + +A  ++ EMS  G KPN  TY  L  G  +++L +
Sbjct: 725 EDGVPPNIHTYTSYINACCKAGDMQRAQTVIDEMSDVGLKPNLKTYTTLIKGWARASLPD 784

Query: 357 EGFKALELGMKLITTKKVRSSTPWLETTL 385
              K  E  MKL   K   ++   L T+L
Sbjct: 785 RALKCFE-EMKLAGLKPDEAAYHCLVTSL 812



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 96/430 (22%), Positives = 166/430 (38%), Gaps = 64/430 (14%)

Query: 39  LQLNKRALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQGEKLFCCIPKDYQNE-LL 97
           +Q  K+ L V E  ++E  + P  + Y  L+   +K   +++       I K+ ++  + 
Sbjct: 430 IQDEKKCLIVFE-RLKECCFTPSIISYGCLINLYVKIGKVAKA----IAISKEMESSGIK 484

Query: 98  YNNLVIACLDKGVIKL-----SLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNI 152
           +NN   + L  G I L     +    ++M   G      ++N LI      G       I
Sbjct: 485 HNNKTYSMLISGFIHLHDFTNAFRIFEEMLKSGLQPDRAIYNLLIEAFCKMGNMDRAIRI 544

Query: 153 LRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAV 212
           L +M+ +++ P    F  +++  A   +++  + +   M+RS   P  ++Y  L   H +
Sbjct: 545 LEKMQKERMQPSNRAFRPIIEGFAVAGDMKRALDILDLMRRSGCAPTVMTYNALI--HGL 602

Query: 213 ARLYTVAETYVEALEK-SMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSKS 271
            R   V E  V  L K S+ G   +     II+ GY A G D+ + +    ++     K 
Sbjct: 603 IRKNQV-ERAVSVLNKMSIAGITPNEHTYTIIMRGYAATG-DIAKAFEYFTKIKEGGLKL 660

Query: 272 YVLAIEAFGRI----AQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLL 327
            V   E   R      ++  A  +  EM S K  + T  YN +I  + + G + +A+ L+
Sbjct: 661 DVYIYETLLRACCKSGRMQSALAVTREMSSQKIARNTFVYNILIDGWARRGDVWEAADLM 720

Query: 328 KEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSI 387
           K+M  +G  PN  TY      C K+                                   
Sbjct: 721 KQMKEDGVPPNIHTYTSYINACCKA----------------------------------- 745

Query: 388 IEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKINDPNL--LRRMILGGA 445
                  GD+  A+ + +E+           Y TLIK + +A + D  L     M L G 
Sbjct: 746 -------GDMQRAQTVIDEMSDVGLKPNLKTYTTLIKGWARASLPDRALKCFEEMKLAGL 798

Query: 446 RPDAETYSLL 455
           +PD   Y  L
Sbjct: 799 KPDEAAYHCL 808



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 71/364 (19%), Positives = 141/364 (38%), Gaps = 51/364 (14%)

Query: 133 FNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMK 192
           F  +I+  +  G +         M+A  + P+   F  L+   A   ++ G +    +MK
Sbjct: 280 FGLMIVYYAKRGDKHHARATFENMRARGIEPNAFVFTSLVHAYAVARDMRGALSCTEEMK 339

Query: 193 RSEVEPNEVSYCILATA-------HAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILY 245
              +E   V+Y IL +         +   L+  A+T +  L   +  N         I++
Sbjct: 340 AEGIELTIVTYSILISGFGKINDTQSADNLFKEAKTNLGDLNGIIYSN---------IIH 390

Query: 246 GYLAKGKDLERIWATVQELP----NVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQL 301
            +   G +++R    V E+     +    +Y   +  +  I    +   ++  ++     
Sbjct: 391 AHCQSG-NMDRAEELVHEMEEDGIDAPIDAYHSMMHGYTIIQDEKKCLIVFERLKECCFT 449

Query: 302 KATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALG------------- 348
            +   Y  +I++Y K G + KA  + KEM  +G K N  TY  L  G             
Sbjct: 450 PSIISYGCLINLYVKIGKVAKAIAISKEMESSGIKHNNKTYSMLISGFIHLHDFTNAFRI 509

Query: 349 ---CFKS---------NLVEEGF---KALELGMKLITTKKVRSSTPWLETTLSIIEIFAE 393
                KS         NL+ E F     ++  ++++   +     P       IIE FA 
Sbjct: 510 FEEMLKSGLQPDRAIYNLLIEAFCKMGNMDRAIRILEKMQKERMQPSNRAFRPIIEGFAV 569

Query: 394 KGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKINDP--NLLRRMILGGARPDAET 451
            GD+  A ++ + ++++        YN LI   ++    +   ++L +M + G  P+  T
Sbjct: 570 AGDMKRALDILDLMRRSGCAPTVMTYNALIHGLIRKNQVERAVSVLNKMSIAGITPNEHT 629

Query: 452 YSLL 455
           Y+++
Sbjct: 630 YTII 633


>gi|297745840|emb|CBI15896.3| unnamed protein product [Vitis vinifera]
          Length = 650

 Score = 72.8 bits (177), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 96/432 (22%), Positives = 188/432 (43%), Gaps = 30/432 (6%)

Query: 37  RKLQLNKRALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQGEKLFCCIPKD--YQN 94
           RK Q +K A E++ W + E+ + P    Y  L+    KN  +S   KLF  +P+     +
Sbjct: 161 RKKQFDK-AKELLNW-MWEQGFSPDVFSYGTLINSLAKNGYMSDALKLFDEMPERGVTPD 218

Query: 95  ELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNS--SPGRRKTIPNI 152
              YN L+     KG I  + E  +++ + G S+   + +  +++N     G+      I
Sbjct: 219 VACYNILIDGFFKKGDILNASEIWERL-LKGPSVYPNIPSYNVMINGLCKCGKFDESFEI 277

Query: 153 LRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAV 212
             +MK ++    + T+  L+       N++G  +VY +M  + V P+ V Y  +   +  
Sbjct: 278 WHRMKKNERGQDLYTYSTLIHGLCGSGNLDGATRVYKEMAENGVSPDVVVYNTMLNGYLR 337

Query: 213 A-RLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLE--RIWATVQELPNV-R 268
           A R+    E + + +EK       + +   I++ G     K  E   IW  + E      
Sbjct: 338 AGRIEECLELW-KVMEKEGCR---TVVSYNILIRGLFENAKVDEAISIWELLPEKDCCAD 393

Query: 269 SKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLK 328
           S +Y + +    +   +++A  +  E ++ +    T  Y+S+I+  C+ G +D+ +G+L 
Sbjct: 394 SMTYGVLVHGLCKNGYLNKALSILEEAENGRGDLDTFAYSSMINGLCREGRLDEVAGVLD 453

Query: 329 EMSMNGCKPNAITYRHLALGCFKSNLVEEGF---KALELGMKLITTKKVRSSTPWLETTL 385
           +M+ +GCKPN     H+       N V  GF     LE  ++       +   P + T  
Sbjct: 454 QMTKHGCKPNP----HVC------NAVINGFVRASKLEDALRFFGNMVSKGCFPTVVTYN 503

Query: 386 SIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKINDP--NLLRRMILG 443
           ++I   ++      A  L +E+    +      Y+ L+    + K  D   NL  + +  
Sbjct: 504 TLINGLSKAERFSEAYALVKEMLHKGWKPNMITYSLLMNGLCQGKKLDMALNLWCQALEK 563

Query: 444 GARPDAETYSLL 455
           G +PD + ++++
Sbjct: 564 GFKPDVKMHNII 575



 Score = 63.9 bits (154), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 68/325 (20%), Positives = 137/325 (42%), Gaps = 43/325 (13%)

Query: 161 VAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAE 220
           ++P++ T++IL+KI       +   ++ + M      P+  SY  L  + A     + A 
Sbjct: 145 LSPNLQTYNILIKISCRKKQFDKAKELLNWMWEQGFSPDVFSYGTLINSLAKNGYMSDAL 204

Query: 221 TYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDL--ERIWATVQELPNVRSK--SYVLAI 276
              + + +     + +  ++LI   G+  KG  L    IW  + + P+V     SY + I
Sbjct: 205 KLFDEMPERGVTPDVACYNILID--GFFKKGDILNASEIWERLLKGPSVYPNIPSYNVMI 262

Query: 277 EAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCK 336
               +  +   + E+W  M+  ++ +    Y+++I   C +G +D A+ + KEM+ NG  
Sbjct: 263 NGLCKCGKFDESFEIWHRMKKNERGQDLYTYSTLIHGLCGSGNLDGATRVYKEMAENGVS 322

Query: 337 PNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPW------------LETT 384
           P+ + Y  +  G  ++  +EE    LEL  K++  +  R+   +            ++  
Sbjct: 323 PDVVVYNTMLNGYLRAGRIEE---CLEL-WKVMEKEGCRTVVSYNILIRGLFENAKVDEA 378

Query: 385 LSIIEIFAEK-------------------GDVGNAENLFEELKKANYTKYTFVYNTLIKA 425
           +SI E+  EK                   G +  A ++ EE +       TF Y+++I  
Sbjct: 379 ISIWELLPEKDCCADSMTYGVLVHGLCKNGYLNKALSILEEAENGRGDLDTFAYSSMING 438

Query: 426 YVKAKIND--PNLLRRMILGGARPD 448
             +    D    +L +M   G +P+
Sbjct: 439 LCREGRLDEVAGVLDQMTKHGCKPN 463



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 44/166 (26%), Positives = 71/166 (42%), Gaps = 14/166 (8%)

Query: 265 PNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKAS 324
           P +RS  Y   + A     +   AE  +L  +++      + YN +I + C+    DKA 
Sbjct: 112 PGIRS--YNSLLNALIESNKWDEAESFFLYFETMGLSPNLQTYNILIKISCRKKQFDKAK 169

Query: 325 GLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETT 384
            LL  M   G  P+  +Y     G   ++L + G+  +   +KL      R  TP +   
Sbjct: 170 ELLNWMWEQGFSPDVFSY-----GTLINSLAKNGY--MSDALKLFDEMPERGVTPDVACY 222

Query: 385 LSIIEIFAEKGDVGNAENLFEELKKA-----NYTKYTFVYNTLIKA 425
             +I+ F +KGD+ NA  ++E L K      N   Y  + N L K 
Sbjct: 223 NILIDGFFKKGDILNASEIWERLLKGPSVYPNIPSYNVMINGLCKC 268


>gi|115449175|ref|NP_001048367.1| Os02g0793200 [Oryza sativa Japonica Group]
 gi|113537898|dbj|BAF10281.1| Os02g0793200 [Oryza sativa Japonica Group]
 gi|215704904|dbj|BAG94932.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 473

 Score = 72.8 bits (177), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 71/299 (23%), Positives = 129/299 (43%), Gaps = 16/299 (5%)

Query: 163 PHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVA-ET 221
           P V T++ L+        +E  + V   M+ + VEP+ V+Y  L    A   L   A + 
Sbjct: 56  PDVVTYNTLLAAHCRAAGLEAGLVVMGRMREAGVEPDAVTYNSLIAGAARRGLPIHALDL 115

Query: 222 YVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQE---LPNVRSKSYVLAIEA 278
           + E L   +  ++WS   ++  L+      +D  R++A + E    P     +Y   ++ 
Sbjct: 116 FDEMLRSGIAPDSWSYNPLMHCLF-RSGHPEDAYRVFADMAEKGIAPC--DTTYNTLLDG 172

Query: 279 FGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPN 338
             R      A  ++  +Q      +   YN++I+  C +G +  A  +L+E+      PN
Sbjct: 173 MFRAGYAMNAYRMFRYLQRAGLPVSIVTYNTMINGLCSSGKVGYARMVLRELGRTDHAPN 232

Query: 339 AITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVG 398
            ITY  +   CFK    E+G   L+  + L+    +    P+     ++I    +KG +G
Sbjct: 233 IITYTAVMKCCFKYGRFEQG---LDTFLSLLDRGYISDVYPY----CTVISALVKKGRLG 285

Query: 399 NAENLFEELKKANYTKYTFVYNTLIKAYVK-AKINDP-NLLRRMILGGARPDAETYSLL 455
            A N  + + +      +  YNTLI    +  K++D   L+  M  GG   D  T+++L
Sbjct: 286 EANNYCDLMLQNGSRLDSVCYNTLIHMRCQEGKLDDAFELVSMMEDGGLESDEYTFAIL 344



 Score = 42.7 bits (99), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 52/256 (20%), Positives = 101/256 (39%), Gaps = 15/256 (5%)

Query: 98  YNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIP----NIL 153
           YN L+ A      ++  L  M +MR  G     + +N LI    +   R+ +P    ++ 
Sbjct: 61  YNTLLAAHCRAAGLEAGLVVMGRMREAGVEPDAVTYNSLI----AGAARRGLPIHALDLF 116

Query: 154 RQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVA 213
            +M    +AP   +++ LM       + E   +V++DM    + P + +Y  L      A
Sbjct: 117 DEMLRSGIAPDSWSYNPLMHCLFRSGHPEDAYRVFADMAEKGIAPCDTTYNTLLDGMFRA 176

Query: 214 RLYTVAETYVEALEKSMTGNNWSTLDVLI---ILYGYLAKGKDLERIWATVQELPNVRSK 270
                A      L+++    +  T + +I      G +   + + R        PN+ + 
Sbjct: 177 GYAMNAYRMFRYLQRAGLPVSIVTYNTMINGLCSSGKVGYARMVLRELGRTDHAPNIITY 236

Query: 271 SYVL-AIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKE 329
           + V+     +GR  Q     + +L +     +     Y +VIS   K G + +A+     
Sbjct: 237 TAVMKCCFKYGRFEQ---GLDTFLSLLDRGYISDVYPYCTVISALVKKGRLGEANNYCDL 293

Query: 330 MSMNGCKPNAITYRHL 345
           M  NG + +++ Y  L
Sbjct: 294 MLQNGSRLDSVCYNTL 309


>gi|326487476|dbj|BAJ89722.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 805

 Score = 72.8 bits (177), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 81/342 (23%), Positives = 138/342 (40%), Gaps = 47/342 (13%)

Query: 118 MKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEAN 177
           +  MR  G        + +I      G           +KA   AP V T++ L+++   
Sbjct: 242 LADMRAAGVEPDGFTASTVIAAAGRDGLVDEAVAFFEDLKARGHAPCVVTYNALLQVFGK 301

Query: 178 DHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWST 237
             N    ++V  +M+ +  +P+ V+Y  LA ++A A  Y  A                  
Sbjct: 302 AGNYTEALRVLREMEDAGCKPDAVTYNELAGSYARAGFYQEAA---------------KC 346

Query: 238 LDVLIILYGYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQS 297
           +D +I        GK L         LPN  + +Y   + A+G   +V  A  L+  M+ 
Sbjct: 347 IDTMI--------GKGL---------LPN--TFTYNTIMTAYGNAGKVDEALALFDRMKK 387

Query: 298 VKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEE 357
              +  T  YN V+ +  K         +L EMS +GC PN +T+  L   C K  +   
Sbjct: 388 NGFIPYTNTYNLVLGMLGKKSRFAAMLEMLGEMSRSGCTPNRVTWNTLLAVCGKRGMESY 447

Query: 358 GFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTF 417
             + LE GMK    +  R      +T  ++I  +   G   NA  +++E+  A +     
Sbjct: 448 VTRVLE-GMKSCKVELCR------DTYNTLICAYGRCGSRANAFKMYDEMTAAGFAPCLT 500

Query: 418 VYNTLIKAYVKAKIND----PNLLRRMILGGARPDAETYSLL 455
            YN L+   V ++  D     +++ +M   G +P+  +YSLL
Sbjct: 501 TYNALLN--VLSRQGDWTAARSIVSKMKSEGFKPNDMSYSLL 540



 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 75/318 (23%), Positives = 132/318 (41%), Gaps = 64/318 (20%)

Query: 87  CIPKDYQNELLYNNLVIACLDKGV---IKLSLEYMKKMRVLGHSISYLVFNRLIILNSSP 143
           C P    N + +N L+  C  +G+   +   LE MK  +V    +    +N LI      
Sbjct: 425 CTP----NRVTWNTLLAVCGKRGMESYVTRVLEGMKSCKV---ELCRDTYNTLICAYGRC 477

Query: 144 GRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSY 203
           G R     +  +M A   AP ++T++ L+ + +   +      + S MK    +PN++SY
Sbjct: 478 GSRANAFKMYDEMTAAGFAPCLTTYNALLNVLSRQGDWTAARSIVSKMKSEGFKPNDMSY 537

Query: 204 CILATAHAVARLYTVAETYVEALEKSMTGNN----WSTLDVLIILYGYLAKGKDLERIWA 259
            +L   HA           +EA+EK +   N    W  L  L+I      + + +ER + 
Sbjct: 538 SLLLQCHAKGG----NAAGIEAIEKEVYQGNIFPSWVILRTLVIANFKCRRLEGIERAFQ 593

Query: 260 TVQ---ELPNV-----------RSKSYVLAIEAFGRIAQV----------------SRAE 289
            V+     P++           ++  Y  A+E F  I Q+                +++ 
Sbjct: 594 EVKARGHKPDLVILNSMLSIYAKNGLYSKAMEMFESIEQLGLSPDLITYNSLMDMYAKSN 653

Query: 290 ELWLEMQSVKQLKATE---------------QYNSVISVYCKNGFIDKASGLLKEMSMNG 334
           E W   + + +L++++                YN+VI+ +CK G I +A  +L EM  +G
Sbjct: 654 EPWEAEKILNRLRSSQSQQQQQQQQLKPDVVSYNTVINGFCKEGLIKEAQRVLSEMIADG 713

Query: 335 CKPNAITYRHLALGCFKS 352
             P  ITY H  +G + S
Sbjct: 714 VAPCVITY-HTLVGGYAS 730



 Score = 68.6 bits (166), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 58/224 (25%), Positives = 104/224 (46%), Gaps = 23/224 (10%)

Query: 210 HAVAR--LYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQEL--- 264
           HA++R   Y  A    + L +        T +V++ +YG +  G+   R+ A + ++   
Sbjct: 191 HALSREGRYERALRLFDELRREGVAPTRVTYNVVLDVYGRM--GRSWPRVVALLADMRAA 248

Query: 265 ---PNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFID 321
              P+  + S V+A  A GR   V  A   + ++++         YN+++ V+ K G   
Sbjct: 249 GVEPDGFTASTVIA--AAGRDGLVDEAVAFFEDLKARGHAPCVVTYNALLQVFGKAGNYT 306

Query: 322 KASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALE--LGMKLITTKKVRSSTP 379
           +A  +L+EM   GCKP+A+TY  LA    ++   +E  K ++  +G  L+         P
Sbjct: 307 EALRVLREMEDAGCKPDAVTYNELAGSYARAGFYQEAAKCIDTMIGKGLL---------P 357

Query: 380 WLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLI 423
              T  +I+  +   G V  A  LF+ +KK  +  YT  YN ++
Sbjct: 358 NTFTYNTIMTAYGNAGKVDEALALFDRMKKNGFIPYTNTYNLVL 401



 Score = 59.3 bits (142), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 73/368 (19%), Positives = 142/368 (38%), Gaps = 35/368 (9%)

Query: 98  YNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMK 157
           YN L+      G    +L  +++M   G     + +N L    +  G  +     +  M 
Sbjct: 292 YNALLQVFGKAGNYTEALRVLREMEDAGCKPDAVTYNELAGSYARAGFYQEAAKCIDTMI 351

Query: 158 ADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSY-CILATAHAVARLY 216
              + P+  T++ +M    N   ++  + ++  MK++   P   +Y  +L      +R  
Sbjct: 352 GKGLLPNTFTYNTIMTAYGNAGKVDEALALFDRMKKNGFIPYTNTYNLVLGMLGKKSRFA 411

Query: 217 TVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELP-NVRSKSYVLA 275
            + E   E + +S    N  T + L+ + G       + R+   ++     +   +Y   
Sbjct: 412 AMLEMLGE-MSRSGCTPNRVTWNTLLAVCGKRGMESYVTRVLEGMKSCKVELCRDTYNTL 470

Query: 276 IEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGC 335
           I A+GR    + A +++ EM +         YN++++V  + G    A  ++ +M   G 
Sbjct: 471 ICAYGRCGSRANAFKMYDEMTAAGFAPCLTTYNALLNVLSRQGDWTAARSIVSKMKSEGF 530

Query: 336 KPNAITYRHLALGCFKSNLVEEGFKALELGM----------------------------- 366
           KPN ++Y  L L C        G +A+E  +                             
Sbjct: 531 KPNDMSY-SLLLQCHAKGGNAAGIEAIEKEVYQGNIFPSWVILRTLVIANFKCRRLEGIE 589

Query: 367 KLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAY 426
           +     K R   P L    S++ I+A+ G    A  +FE +++   +     YN+L+  Y
Sbjct: 590 RAFQEVKARGHKPDLVILNSMLSIYAKNGLYSKAMEMFESIEQLGLSPDLITYNSLMDMY 649

Query: 427 VKAKINDP 434
             AK N+P
Sbjct: 650 --AKSNEP 655


>gi|125600921|gb|EAZ40497.1| hypothetical protein OsJ_24952 [Oryza sativa Japonica Group]
          Length = 766

 Score = 72.8 bits (177), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 75/352 (21%), Positives = 142/352 (40%), Gaps = 65/352 (18%)

Query: 133 FNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDH-NIEGLMKVYSDM 191
           +  L+   S  GR +    + R+M    V P + T+++++ + +      + ++++ + M
Sbjct: 157 YTALVSAFSRAGRFRDAVAVFRRMVDSGVQPAIVTYNVVLHVYSKMAVPWKEVVELVASM 216

Query: 192 KRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKG 251
           K   V P+  +Y  L +      LY  A    + ++ S    +  T + L+ +YG     
Sbjct: 217 KEHGVAPDRYTYNTLISCCRRRALYKEAAQVFDEMKASGFEPDKVTFNSLLDVYG----- 271

Query: 252 KDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVI 311
                           +++ +  AIE                EM+ V    +   YNS+I
Sbjct: 272 ----------------KARRHDEAIEVIQ-------------EMERVGCPPSVVTYNSLI 302

Query: 312 SVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGF----KALELGMK 367
           S Y K+G +++A  L +EM + G KP+ +TY  L  G  ++  ++       + +  G K
Sbjct: 303 SSYVKDGLLEQAVALKQEMEVKGMKPDVVTYTTLISGLDRAGKIDAAIVEYDEMVRNGCK 362

Query: 368 --------LITTKKVRSSTPWLETTL----------------SIIEIFAEKGDVGNAENL 403
                   LI    VR   P +                    +++ +F + G       +
Sbjct: 363 PNLCTYNALIKMHGVRGKFPEMMAVFDEFRSAGFVPDIVTWNTLLAVFGQNGLDSEVSGV 422

Query: 404 FEELKKANYTKYTFVYNTLIKAYVKAKIND--PNLLRRMILGGARPDAETYS 453
           F+E+KKA Y      Y +LI +Y +  + D    + +RM+  G  PD  TY+
Sbjct: 423 FKEMKKAGYIPERDTYVSLISSYSRCGLFDLAMQIYKRMMEAGIYPDVSTYN 474



 Score = 69.3 bits (168), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 71/362 (19%), Positives = 143/362 (39%), Gaps = 60/362 (16%)

Query: 72  TIKNHGISQGEKLFCCIPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYL 131
           ++K HG++         P  Y     YN L+  C  + + K + +   +M+  G     +
Sbjct: 215 SMKEHGVA---------PDRYT----YNTLISCCRRRALYKEAAQVFDEMKASGFEPDKV 261

Query: 132 VFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDM 191
            FN L+ +     R      ++++M+     P V T++ L+     D  +E  + +  +M
Sbjct: 262 TFNSLLDVYGKARRHDEAIEVIQEMERVGCPPSVVTYNSLISSYVKDGLLEQAVALKQEM 321

Query: 192 KRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKG 251
           +   ++P+ V+Y  L +    A     A    + + ++    N  T + LI ++G   K 
Sbjct: 322 EVKGMKPDVVTYTTLISGLDRAGKIDAAIVEYDEMVRNGCKPNLCTYNALIKMHGVRGKF 381

Query: 252 KDLERIWATVQE---LPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYN 308
            ++  ++   +    +P++ + + +LA+  FG+    S    ++ EM+    +   + Y 
Sbjct: 382 PEMMAVFDEFRSAGFVPDIVTWNTLLAV--FGQNGLDSEVSGVFKEMKKAGYIPERDTYV 439

Query: 309 SVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKL 368
           S+IS Y + G  D A  + K M   G  P+  TY                          
Sbjct: 440 SLISSYSRCGLFDLAMQIYKRMMEAGIYPDVSTYN------------------------- 474

Query: 369 ITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVK 428
                            +++   A  G    AE LF E+++ +     + Y++L+ AY  
Sbjct: 475 -----------------AVLSALARGGRWEQAEKLFAEMEERDCKPDEYSYSSLLHAYAN 517

Query: 429 AK 430
           AK
Sbjct: 518 AK 519



 Score = 68.2 bits (165), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 63/303 (20%), Positives = 134/303 (44%), Gaps = 10/303 (3%)

Query: 109 GVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTF 168
           G+  L+++  K+M   G       +N ++   +  GR +    +  +M+     P   ++
Sbjct: 449 GLFDLAMQIYKRMMEAGIYPDVSTYNAVLSALARGGRWEQAEKLFAEMEERDCKPDEYSY 508

Query: 169 HILMKIEANDHNIEGLMKVYSDMKRSEVEP-NEVSYCILATAHAVARLYTVAETYVEALE 227
             L+   AN   ++ +  +  D+    +EP N +   ++     V  L    + ++E L 
Sbjct: 509 SSLLHAYANAKRLDKMKALSDDIYSERIEPHNWLVKTLVLVNSKVNNLAEAEKAFLE-LR 567

Query: 228 KSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELP-NVRSKSYVLAIEAFGRIAQVS 286
           +     + + L+ ++ +YG     + +E+I + ++E   N+ + +Y   +  + R+    
Sbjct: 568 QKRCSLDINVLNAMVSIYGKNRMVRKVEKILSLMKESAINLSAATYNSLMHMYSRLGDCE 627

Query: 287 RAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLA 346
           + E +  E++S         YN+VI  Y + G + +AS L  EM  +G KP+ +TY    
Sbjct: 628 KCENILTEIKSSGVRPDRYSYNTVIYAYGRKGQMKEASRLFSEMKCSGLKPDVVTYNIFV 687

Query: 347 LGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEE 406
                +++ EE   A+EL   ++T    +   P   T  SI+E +   G + +A+     
Sbjct: 688 KSYVSNSMFEE---AIELVRYMVT----QGCKPNERTYNSIVEGYCRNGKLTDAKIFVSN 740

Query: 407 LKK 409
           L +
Sbjct: 741 LPQ 743



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 78/374 (20%), Positives = 155/374 (41%), Gaps = 22/374 (5%)

Query: 87  CIPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRR 146
           C P    N   YN L+     +G     +    + R  G     + +N L+ +    G  
Sbjct: 361 CKP----NLCTYNALIKMHGVRGKFPEMMAVFDEFRSAGFVPDIVTWNTLLAVFGQNGLD 416

Query: 147 KTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCIL 206
             +  + ++MK     P   T+  L+   +     +  M++Y  M  + + P+  +Y  +
Sbjct: 417 SEVSGVFKEMKKAGYIPERDTYVSLISSYSRCGLFDLAMQIYKRMMEAGIYPDVSTYNAV 476

Query: 207 ATAHAVARLYTVAET-YVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELP 265
            +A A    +  AE  + E  E+    + +S      +L+ Y A  K L+++ A   ++ 
Sbjct: 477 LSALARGGRWEQAEKLFAEMEERDCKPDEYSYSS---LLHAY-ANAKRLDKMKALSDDIY 532

Query: 266 NVRSKSYVLAIEAF----GRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFID 321
           + R + +   ++       ++  ++ AE+ +LE++  +        N+++S+Y KN  + 
Sbjct: 533 SERIEPHNWLVKTLVLVNSKVNNLAEAEKAFLELRQKRCSLDINVLNAMVSIYGKNRMVR 592

Query: 322 KASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWL 381
           K   +L  M  +    +A TY  L      S L +      E    ++T  K     P  
Sbjct: 593 KVEKILSLMKESAINLSAATYNSLMH--MYSRLGD-----CEKCENILTEIKSSGVRPDR 645

Query: 382 ETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKINDP--NLLRR 439
            +  ++I  +  KG +  A  LF E+K +        YN  +K+YV   + +    L+R 
Sbjct: 646 YSYNTVIYAYGRKGQMKEASRLFSEMKCSGLKPDVVTYNIFVKSYVSNSMFEEAIELVRY 705

Query: 440 MILGGARPDAETYS 453
           M+  G +P+  TY+
Sbjct: 706 MVTQGCKPNERTYN 719



 Score = 58.5 bits (140), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 97/464 (20%), Positives = 192/464 (41%), Gaps = 50/464 (10%)

Query: 33  INRLRKLQLNKRALEVMEWVIRERPYRPKELDYSYLLEF--TIKNHG-----ISQGEKLF 85
           I+  R+  L K A +V +  ++   + P ++ ++ LL+     + H      I + E++ 
Sbjct: 232 ISCCRRRALYKEAAQVFDE-MKASGFEPDKVTFNSLLDVYGKARRHDEAIEVIQEMERVG 290

Query: 86  CCIPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGR 145
           C       + + YN+L+ + +  G+++ ++   ++M V G     + +  LI      G+
Sbjct: 291 CP-----PSVVTYNSLISSYVKDGLLEQAVALKQEMEVKGMKPDVVTYTTLISGLDRAGK 345

Query: 146 RKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCI 205
                    +M  +   P++ T++ L+K+         +M V+ + + +   P+ V++  
Sbjct: 346 IDAAIVEYDEMVRNGCKPNLCTYNALIKMHGVRGKFPEMMAVFDEFRSAGFVPDIVTWNT 405

Query: 206 LATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQEL- 264
           L        L +      + ++K+       T   LI  Y          +I+  + E  
Sbjct: 406 LLAVFGQNGLDSEVSGVFKEMKKAGYIPERDTYVSLISSYSRCGLFDLAMQIYKRMMEAG 465

Query: 265 --PNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATE-QYNSVISVYCKNGFID 321
             P+V + + VL+  A  R  +  +AE+L+ EM+  +  K  E  Y+S++  Y     +D
Sbjct: 466 IYPDVSTYNAVLS--ALARGGRWEQAEKLFAEMEE-RDCKPDEYSYSSLLHAYANAKRLD 522

Query: 322 KASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKA-LELGMKLIT---------- 370
           K   L  ++     +P+    + L L   K N + E  KA LEL  K  +          
Sbjct: 523 KMKALSDDIYSERIEPHNWLVKTLVLVNSKVNNLAEAEKAFLELRQKRCSLDINVLNAMV 582

Query: 371 -----TKKVRSSTPWLE------------TTLSIIEIFAEKGDVGNAENLFEELKKANYT 413
                 + VR     L             T  S++ +++  GD    EN+  E+K +   
Sbjct: 583 SIYGKNRMVRKVEKILSLMKESAINLSAATYNSLMHMYSRLGDCEKCENILTEIKSSGVR 642

Query: 414 KYTFVYNTLIKAY-VKAKINDPN-LLRRMILGGARPDAETYSLL 455
              + YNT+I AY  K ++ + + L   M   G +PD  TY++ 
Sbjct: 643 PDRYSYNTVIYAYGRKGQMKEASRLFSEMKCSGLKPDVVTYNIF 686



 Score = 52.0 bits (123), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 48/211 (22%), Positives = 85/211 (40%), Gaps = 10/211 (4%)

Query: 248 LAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQY 307
           +A+   L    A +   P   + +Y   + AF R  +   A  ++  M       A   Y
Sbjct: 133 MARAGRLAEASALLDAAPGPDAGAYTALVSAFSRAGRFRDAVAVFRRMVDSGVQPAIVTY 192

Query: 308 NSVISVYCKNGFI-DKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGM 366
           N V+ VY K      +   L+  M  +G  P+  TY  L   C +  L +E  +  +   
Sbjct: 193 NVVLHVYSKMAVPWKEVVELVASMKEHGVAPDRYTYNTLISCCRRRALYKEAAQVFD--- 249

Query: 367 KLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAY 426
                 K     P   T  S+++++ +      A  + +E+++         YN+LI +Y
Sbjct: 250 ----EMKASGFEPDKVTFNSLLDVYGKARRHDEAIEVIQEMERVGCPPSVVTYNSLISSY 305

Query: 427 VKAKINDP--NLLRRMILGGARPDAETYSLL 455
           VK  + +    L + M + G +PD  TY+ L
Sbjct: 306 VKDGLLEQAVALKQEMEVKGMKPDVVTYTTL 336


>gi|358344944|ref|XP_003636545.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355502480|gb|AES83683.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1280

 Score = 72.8 bits (177), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 105/475 (22%), Positives = 191/475 (40%), Gaps = 70/475 (14%)

Query: 32  SINRLRKLQLNKRALE---VMEWVIRERPYRPKELDYSYLLEFTIKNHGISQGEKLFCCI 88
           S NR+R+++     +E   ++ ++I+ + + P  L  S  +E       +     L  C 
Sbjct: 53  SFNRMRQIRQTPSIVEFNKILTYLIKTKNHYPTVLSLSTQMESKGVKPDLFTLSILINCY 112

Query: 89  PKDYQNELLYNNLVIA-------CLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNS 141
              +  ++ +   V A       CL+ G +  +L +   +  LG  ++++ +  LI    
Sbjct: 113 C--HLGQMTFAFSVFAKILKMGLCLN-GKVNEALLFHDHVLALGFHLNHVTYGILINGLC 169

Query: 142 SPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEV 201
             G+ +    +LRQ++   V  +V  +  ++     D  +     +YS+M    + P  V
Sbjct: 170 KMGQTRAALQVLRQIEGKLVNTNVVMYSTIIDGLCKDKLVTDAYGLYSEMIVKRIPPTVV 229

Query: 202 S-------YCILATAHAVARLY---------------------------------TVAET 221
           +       +CI+       RL+                                  +A  
Sbjct: 230 TFSSLIYGFCIVGKFKDAFRLFNEMVMKNINPDAYTFNILVDALCKEGKIKEAKNVIAVM 289

Query: 222 YVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGR 281
             E +E ++    ++TL     L   + K K +  I + ++  PN  S+SY + I  F +
Sbjct: 290 MKEGVEPTVV--TYNTLMDGYCLVNEVGKAKHVLSIISRMRVAPN--SRSYNIMINGFCK 345

Query: 282 IAQVSRAEELWLEM--QSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNA 339
           I  V  A  L+ EM  + +   K T  YNS+I   CK G I  A  L+ EM  N    + 
Sbjct: 346 IKMVDEALCLFHEMCCRGIAPHKVT--YNSLIDGLCKAGRIPYAWELVDEMHNNCIPADI 403

Query: 340 ITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGN 399
           +TY  L +  F  N      + ++  + L+   K     P + T   +I+   + G + N
Sbjct: 404 VTYNSL-IDVFCKN------QHVDKAIALVKKIKEHGIQPNMCTYNILIDGLCKGGQLKN 456

Query: 400 AENLFEELKKANYTKYTFVYNTLIKAYVKAKINDPN--LLRRMILGGARPDAETY 452
           A+++F++L    Y    + YN +I    K  + D    LL +M   G  PDA TY
Sbjct: 457 AQDVFQDLLIKGYNVNAWTYNIMINGLCKEGLFDEAEVLLSKMEDNGIIPDAVTY 511



 Score = 39.7 bits (91), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 64/284 (22%), Positives = 113/284 (39%), Gaps = 32/284 (11%)

Query: 98  YNNLVIA-CL--DKGVIKLSLEYMKKMRVLGHSISYLV----FNRLIILNSSPGRRKTIP 150
           YN L+   CL  + G  K  L  + +MRV  +S SY +    F ++ +++ +        
Sbjct: 301 YNTLMDGYCLVNEVGKAKHVLSIISRMRVAPNSRSYNIMINGFCKIKMVDEALC------ 354

Query: 151 NILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAH 210
            +  +M    +APH  T++ L+        I    ++  +M  + +  + V+Y  L    
Sbjct: 355 -LFHEMCCRGIAPHKVTYNSLIDGLCKAGRIPYAWELVDEMHNNCIPADIVTYNSLIDVF 413

Query: 211 AVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELP----N 266
              +    A   V+ +++     N  T ++LI     L KG  L+      Q+L     N
Sbjct: 414 CKNQHVDKAIALVKKIKEHGIQPNMCTYNILI---DGLCKGGQLKNAQDVFQDLLIKGYN 470

Query: 267 VRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGL 326
           V + +Y + I    +      AE L  +M+    +     Y ++I         +KA  L
Sbjct: 471 VNAWTYNIMINGLCKEGLFDEAEVLLSKMEDNGIIPDAVTYETIIQALFHKDENEKAQKL 530

Query: 327 LKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLIT 370
           L+EM + G    A   R   +G           + L LGM LI+
Sbjct: 531 LREMVIKGVVVYAFEIRRTLVG-----------RTLNLGMNLIS 563


>gi|357436823|ref|XP_003588687.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355477735|gb|AES58938.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 587

 Score = 72.8 bits (177), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 59/217 (27%), Positives = 104/217 (47%), Gaps = 28/217 (12%)

Query: 247 YLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQ 306
           YL + K+ +  W     +P++R   Y + +  + R  ++  AE LW EM++     +   
Sbjct: 239 YLLRRKETDLGW-----VPSIRV--YNIMLNGWFRARKLKHAERLWEEMKNENVRPSVVT 291

Query: 307 YNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHL--AL---GCFKSNL-VEEGFK 360
           Y +++  YC+   ++KA  ++ EM+  G KPNAI Y  +  AL   G FK  L + E F 
Sbjct: 292 YGTLVEGYCRMRRVEKALEMVGEMTKEGIKPNAIVYNPIIDALAEAGRFKEALGMMERFH 351

Query: 361 ALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYN 420
            L++G             P L T  S+++ F + GD+  A  + +++    +      YN
Sbjct: 352 VLQIG-------------PTLSTYNSLVKGFCKAGDIEGASKILKKMISRGFLPIPTTYN 398

Query: 421 TLIKAYVK-AKINDP-NLLRRMILGGARPDAETYSLL 455
              + + +  K+++  NL  +MI  G  PD  TY L+
Sbjct: 399 YFFRYFSRCGKVDEGMNLYTKMIESGHNPDRLTYHLV 435



 Score = 38.9 bits (89), Expect = 5.8,   Method: Compositional matrix adjust.
 Identities = 52/251 (20%), Positives = 105/251 (41%), Gaps = 12/251 (4%)

Query: 104 ACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLII--LNSSPGRRKTIPNILRQMKAD-K 160
           A + K  I+ + E+ K  + +  S+S +    ++I  L      R+    +LR+ + D  
Sbjct: 191 AGMHKAAIR-TFEFAKDKKSIVDSVSEMSLFEILIDSLCKEGSAREASEYLLRRKETDLG 249

Query: 161 VAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAE 220
             P +  ++I++        ++   +++ +MK   V P+ V+Y  L   +   R    A 
Sbjct: 250 WVPSIRVYNIMLNGWFRARKLKHAERLWEEMKNENVRPSVVTYGTLVEGYCRMRRVEKAL 309

Query: 221 TYVEALEKSMTGNNWSTLDVLIILYGYLAKGKD----LERIWATVQELPNVRSKSYVLAI 276
             V  + K     N    + +I       + K+    +ER +  +Q  P +   +Y   +
Sbjct: 310 EMVGEMTKEGIKPNAIVYNPIIDALAEAGRFKEALGMMER-FHVLQIGPTL--STYNSLV 366

Query: 277 EAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCK 336
           + F +   +  A ++  +M S   L     YN     + + G +D+   L  +M  +G  
Sbjct: 367 KGFCKAGDIEGASKILKKMISRGFLPIPTTYNYFFRYFSRCGKVDEGMNLYTKMIESGHN 426

Query: 337 PNAITYRHLAL 347
           P+ +TY HL L
Sbjct: 427 PDRLTY-HLVL 436


>gi|125575301|gb|EAZ16585.1| hypothetical protein OsJ_32057 [Oryza sativa Japonica Group]
          Length = 400

 Score = 72.8 bits (177), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 99/447 (22%), Positives = 178/447 (39%), Gaps = 76/447 (17%)

Query: 12  SAFQSWMREGFPVHRGEIFHSINRLRKLQLNKRALEVMEWVIRERPYRPKELDYSYLLEF 71
           ++F   + E   V + E+   I  L + +   +AL++  W+           D +  LE 
Sbjct: 22  NSFNGALAEERHVAKPEVQSIIKYLCRRRRFSQALQLSMWMTERLHLHLSPGDVANRLEL 81

Query: 72  TIKNHGISQGEKLFCCIPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYL 131
             K +G+ +  + F  +P   + +  Y +L+    +   ++ + E  +KMR +G + SY 
Sbjct: 82  ITKVYGLDRAVEYFDSMPDQLKQQQCYGSLLKCYAEANCVEKAEELFEKMRGMGMASSY- 140

Query: 132 VFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDM 191
                                               ++++M++   +  +E +  ++  M
Sbjct: 141 -----------------------------------AYNVMMRLYLQNGQVERVHSMHQAM 165

Query: 192 KRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKG 251
           + S + P+      ++T H          T V  L K  T           ++  Y+   
Sbjct: 166 EESGIVPD------VSTTH----------TLVAVLRKKKT-----------LVAAYVV-A 197

Query: 252 KDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVI 311
           +D++ I   V E  N  +  Y+  I    ++  +  AE+ + E +S      +   N ++
Sbjct: 198 EDIKAI-ENVLEKANSCNSMYMCRIGVLLKMNDMVGAEKAYEEWESKHVYHDSRLINLLV 256

Query: 312 SVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITT 371
             YCK G +DKA  L+ +    G  P A T   LA G FK   V    KA +L  K + +
Sbjct: 257 DAYCKEGLMDKAEALVDQFIKKGRMPFANTCYKLAGGYFKVGQVS---KAADLTKKALAS 313

Query: 372 KKVRSSTPW---LETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVK 428
               +S  W   L   L  +  FAE+ +V  AE +   L++   T    +Y+ L+K YV 
Sbjct: 314 ----ASNEWIPDLTNVLMSLNYFAEQKNVEAAEEMMSLLQRL-VTPTRDIYHGLLKTYVN 368

Query: 429 AKINDPNLLRRMILGGARPDAETYSLL 455
           A     +LL RM   G   D ET  +L
Sbjct: 369 AGKPVSDLLHRMKKDGMEADEETEKIL 395


>gi|125558386|gb|EAZ03922.1| hypothetical protein OsI_26055 [Oryza sativa Indica Group]
          Length = 658

 Score = 72.8 bits (177), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 77/344 (22%), Positives = 144/344 (41%), Gaps = 14/344 (4%)

Query: 119 KKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKA-DKVAPHVSTFHILMKIEAN 177
           K MR+ G   S L++N L+    + G   T  N+   M   D+V P V +++IL+K    
Sbjct: 211 KAMRLAGVEPSRLIYNCLLDGLVNAGLLDTAVNVFDAMSTEDQVRPDVVSYNILIKGYCR 270

Query: 178 DHNIEGLMKVYSDMK-RSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWS 236
                  M   S+M+ ++++ P++V+Y  L   H     + V     + +E+   GN+  
Sbjct: 271 AGRAHDAMARLSEMQEQAKLTPDKVTYLTLMQCHYSEGTFPVCIGLFQEMEERGMGNDIP 330

Query: 237 TLDVLIILYGYLAKGKDLERIWATVQELPN---VRSKSYVLAIEAFGRIAQVSRAEELWL 293
               ++++      GK  E +    + L       +  Y   I++ G+  +   A  L+ 
Sbjct: 331 QHAYVLVIGALCKDGKPFEGMAVFERMLKRGCAANAAIYTALIDSMGKFGREKEAMALFE 390

Query: 294 EMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSN 353
            M+       +  Y  +++  C+ G +D+A    +     G   NAI Y  L  G  K+ 
Sbjct: 391 RMKDSGLKLDSVTYGVIVNCLCRFGKLDEAVACFRSCQEKGIAVNAIFYTSLIDGFGKAG 450

Query: 354 LVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYT 413
           +V++   + EL  ++I    V  S  +      +I+  A+ G + +A  L++ ++     
Sbjct: 451 MVDQ---SKELFEEMIAKGFVPDSYCY----NVLIDGLAKSGRMDDACALYKRMEDDGCD 503

Query: 414 KYTFVYNTLIKAYVKAKINDPNL--LRRMILGGARPDAETYSLL 455
           +  + Y  LI    K   N+  L     MI  G  P A  +  L
Sbjct: 504 QTVYTYTILIDGLFKEHKNEEALKFWDAMIDKGITPTAAAFRTL 547


>gi|410110067|gb|AFV61113.1| pentatricopeptide repeat-containing protein 123, partial [Aloysia
           herrerae]
          Length = 433

 Score = 72.8 bits (177), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 75/322 (23%), Positives = 148/322 (45%), Gaps = 22/322 (6%)

Query: 98  YNNLVIACLDKGVIKLSLEYMKKM---RVLGHSISYLVFNRLIILNSSPGRRKTIPNILR 154
           Y+ L+     +G+   +L +++KM   RV G  + Y   + LI L+          +I  
Sbjct: 15  YSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLY---SNLIELSRKLCDYSKAISIFS 71

Query: 155 QMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVAR 214
           ++K     P +  ++ ++ +            + S+MK + V PN  SY  L T +   +
Sbjct: 72  RLKRSGFMPDLVAYNAMINVFGKAKLFREARALISEMKTAGVMPNTASYSTLLTMYVENK 131

Query: 215 LYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQEL---PNVRSKS 271
            +  A +    + +     + +T +++I +YG L   K+ ++++  ++++   PNV S +
Sbjct: 132 KFIEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYN 191

Query: 272 YVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMS 331
            +L +  +G       A  L+  MQ     +    YNS++ +Y K    +KA+ L++EM 
Sbjct: 192 TLLRV--YGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQ 249

Query: 332 MNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTL--SIIE 389
             G +PN+ITY         S ++    K  +L    +  +K+RSS   ++  L  ++I 
Sbjct: 250 NRGIEPNSITY---------STIISIWGKVGKLDRAAMLFQKLRSSGVEIDQVLYQTMIV 300

Query: 390 IFAEKGDVGNAENLFEELKKAN 411
            +   G V +A+ L  ELK  +
Sbjct: 301 AYERAGLVAHAKRLLHELKSPD 322



 Score = 41.2 bits (95), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 52/243 (21%), Positives = 99/243 (40%), Gaps = 41/243 (16%)

Query: 189 SDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYL 248
            +M+   + P+  +Y  L T      L+  A ++++ +E+     +       ++LY  L
Sbjct: 1   DEMRERALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGD-------LVLYSNL 53

Query: 249 AKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYN 308
               +L R           +   Y  AI  F R+ +     +L               YN
Sbjct: 54  I---ELSR-----------KLCDYSKAISIFSRLKRSGFMPDLV-------------AYN 86

Query: 309 SVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKL 368
           ++I+V+ K     +A  L+ EM   G  PN  +Y  L L  +  N  ++  +AL +  ++
Sbjct: 87  AMINVFGKAKLFREARALISEMKTAGVMPNTASYSTL-LTMYVEN--KKFIEALSVFSEM 143

Query: 369 ITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVK 428
              K +      L T   +I+++ + G    A+ LF  ++K         YNTL++ Y  
Sbjct: 144 REIKCLLD----LTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGD 199

Query: 429 AKI 431
           A++
Sbjct: 200 AEL 202


>gi|115473111|ref|NP_001060154.1| Os07g0590600 [Oryza sativa Japonica Group]
 gi|34393454|dbj|BAC82993.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|113611690|dbj|BAF22068.1| Os07g0590600 [Oryza sativa Japonica Group]
          Length = 784

 Score = 72.8 bits (177), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 75/352 (21%), Positives = 142/352 (40%), Gaps = 65/352 (18%)

Query: 133 FNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDH-NIEGLMKVYSDM 191
           +  L+   S  GR +    + R+M    V P + T+++++ + +      + ++++ + M
Sbjct: 175 YTALVSAFSRAGRFRDAVAVFRRMVDSGVQPAIVTYNVVLHVYSKMAVPWKEVVELVASM 234

Query: 192 KRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKG 251
           K   V P+  +Y  L +      LY  A    + ++ S    +  T + L+ +YG     
Sbjct: 235 KEHGVAPDRYTYNTLISCCRRRALYKEAAQVFDEMKASGFEPDKVTFNSLLDVYG----- 289

Query: 252 KDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVI 311
                           +++ +  AIE                EM+ V    +   YNS+I
Sbjct: 290 ----------------KARRHDEAIEVIQ-------------EMERVGCPPSVVTYNSLI 320

Query: 312 SVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGF----KALELGMK 367
           S Y K+G +++A  L +EM + G KP+ +TY  L  G  ++  ++       + +  G K
Sbjct: 321 SSYVKDGLLEQAVALKQEMEVKGMKPDVVTYTTLISGLDRAGKIDAAIVEYDEMVRNGCK 380

Query: 368 --------LITTKKVRSSTPWLETTL----------------SIIEIFAEKGDVGNAENL 403
                   LI    VR   P +                    +++ +F + G       +
Sbjct: 381 PNLCTYNALIKMHGVRGKFPEMMAVFDEFRSAGFVPDIVTWNTLLAVFGQNGLDSEVSGV 440

Query: 404 FEELKKANYTKYTFVYNTLIKAYVKAKIND--PNLLRRMILGGARPDAETYS 453
           F+E+KKA Y      Y +LI +Y +  + D    + +RM+  G  PD  TY+
Sbjct: 441 FKEMKKAGYIPERDTYVSLISSYSRCGLFDLAMQIYKRMMEAGIYPDVSTYN 492



 Score = 68.9 bits (167), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 71/362 (19%), Positives = 143/362 (39%), Gaps = 60/362 (16%)

Query: 72  TIKNHGISQGEKLFCCIPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYL 131
           ++K HG++         P  Y     YN L+  C  + + K + +   +M+  G     +
Sbjct: 233 SMKEHGVA---------PDRYT----YNTLISCCRRRALYKEAAQVFDEMKASGFEPDKV 279

Query: 132 VFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDM 191
            FN L+ +     R      ++++M+     P V T++ L+     D  +E  + +  +M
Sbjct: 280 TFNSLLDVYGKARRHDEAIEVIQEMERVGCPPSVVTYNSLISSYVKDGLLEQAVALKQEM 339

Query: 192 KRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKG 251
           +   ++P+ V+Y  L +    A     A    + + ++    N  T + LI ++G   K 
Sbjct: 340 EVKGMKPDVVTYTTLISGLDRAGKIDAAIVEYDEMVRNGCKPNLCTYNALIKMHGVRGKF 399

Query: 252 KDLERIWATVQE---LPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYN 308
            ++  ++   +    +P++ + + +LA+  FG+    S    ++ EM+    +   + Y 
Sbjct: 400 PEMMAVFDEFRSAGFVPDIVTWNTLLAV--FGQNGLDSEVSGVFKEMKKAGYIPERDTYV 457

Query: 309 SVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKL 368
           S+IS Y + G  D A  + K M   G  P+  TY                          
Sbjct: 458 SLISSYSRCGLFDLAMQIYKRMMEAGIYPDVSTYN------------------------- 492

Query: 369 ITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVK 428
                            +++   A  G    AE LF E+++ +     + Y++L+ AY  
Sbjct: 493 -----------------AVLSALARGGRWEQAEKLFAEMEERDCKPDEYSYSSLLHAYAN 535

Query: 429 AK 430
           AK
Sbjct: 536 AK 537



 Score = 68.2 bits (165), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 65/314 (20%), Positives = 139/314 (44%), Gaps = 10/314 (3%)

Query: 98  YNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMK 157
           Y +L+ +    G+  L+++  K+M   G       +N ++   +  GR +    +  +M+
Sbjct: 456 YVSLISSYSRCGLFDLAMQIYKRMMEAGIYPDVSTYNAVLSALARGGRWEQAEKLFAEME 515

Query: 158 ADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEP-NEVSYCILATAHAVARLY 216
                P   ++  L+   AN   ++ +  +  D+    +EP N +   ++     V  L 
Sbjct: 516 ERDCKPDEYSYSSLLHAYANAKRLDKMKALSDDIYSERIEPHNWLVKTLVLVNSKVNNLA 575

Query: 217 TVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELP-NVRSKSYVLA 275
              + ++E L +     + + L+ ++ +YG     + +E+I + ++E   N+ + +Y   
Sbjct: 576 EAEKAFLE-LRQKRCSLDINVLNAMVSIYGKNRMVRKVEKILSLMKESAINLSAATYNSL 634

Query: 276 IEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGC 335
           +  + R+    + E +  E++S         YN+VI  Y + G + +AS L  EM  +G 
Sbjct: 635 MHMYSRLGDCEKCENILTEIKSSGVRPDRYSYNTVIYAYGRKGQMKEASRLFSEMKCSGL 694

Query: 336 KPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKG 395
           KP+ +TY         +++ EE   A+EL   ++T    +   P   T  SI+E +   G
Sbjct: 695 KPDVVTYNIFVKSYVSNSMFEE---AIELVRYMVT----QGCKPNERTYNSIVEGYCRNG 747

Query: 396 DVGNAENLFEELKK 409
            + +A+     L +
Sbjct: 748 KLTDAKIFVSNLPQ 761



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 78/374 (20%), Positives = 155/374 (41%), Gaps = 22/374 (5%)

Query: 87  CIPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRR 146
           C P    N   YN L+     +G     +    + R  G     + +N L+ +    G  
Sbjct: 379 CKP----NLCTYNALIKMHGVRGKFPEMMAVFDEFRSAGFVPDIVTWNTLLAVFGQNGLD 434

Query: 147 KTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCIL 206
             +  + ++MK     P   T+  L+   +     +  M++Y  M  + + P+  +Y  +
Sbjct: 435 SEVSGVFKEMKKAGYIPERDTYVSLISSYSRCGLFDLAMQIYKRMMEAGIYPDVSTYNAV 494

Query: 207 ATAHAVARLYTVAET-YVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELP 265
            +A A    +  AE  + E  E+    + +S      +L+ Y A  K L+++ A   ++ 
Sbjct: 495 LSALARGGRWEQAEKLFAEMEERDCKPDEYSYSS---LLHAY-ANAKRLDKMKALSDDIY 550

Query: 266 NVRSKSYVLAIEAF----GRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFID 321
           + R + +   ++       ++  ++ AE+ +LE++  +        N+++S+Y KN  + 
Sbjct: 551 SERIEPHNWLVKTLVLVNSKVNNLAEAEKAFLELRQKRCSLDINVLNAMVSIYGKNRMVR 610

Query: 322 KASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWL 381
           K   +L  M  +    +A TY  L      S L +      E    ++T  K     P  
Sbjct: 611 KVEKILSLMKESAINLSAATYNSLMH--MYSRLGD-----CEKCENILTEIKSSGVRPDR 663

Query: 382 ETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKINDP--NLLRR 439
            +  ++I  +  KG +  A  LF E+K +        YN  +K+YV   + +    L+R 
Sbjct: 664 YSYNTVIYAYGRKGQMKEASRLFSEMKCSGLKPDVVTYNIFVKSYVSNSMFEEAIELVRY 723

Query: 440 MILGGARPDAETYS 453
           M+  G +P+  TY+
Sbjct: 724 MVTQGCKPNERTYN 737



 Score = 58.2 bits (139), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 97/464 (20%), Positives = 192/464 (41%), Gaps = 50/464 (10%)

Query: 33  INRLRKLQLNKRALEVMEWVIRERPYRPKELDYSYLLEF--TIKNHG-----ISQGEKLF 85
           I+  R+  L K A +V +  ++   + P ++ ++ LL+     + H      I + E++ 
Sbjct: 250 ISCCRRRALYKEAAQVFDE-MKASGFEPDKVTFNSLLDVYGKARRHDEAIEVIQEMERVG 308

Query: 86  CCIPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGR 145
           C       + + YN+L+ + +  G+++ ++   ++M V G     + +  LI      G+
Sbjct: 309 CP-----PSVVTYNSLISSYVKDGLLEQAVALKQEMEVKGMKPDVVTYTTLISGLDRAGK 363

Query: 146 RKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCI 205
                    +M  +   P++ T++ L+K+         +M V+ + + +   P+ V++  
Sbjct: 364 IDAAIVEYDEMVRNGCKPNLCTYNALIKMHGVRGKFPEMMAVFDEFRSAGFVPDIVTWNT 423

Query: 206 LATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQEL- 264
           L        L +      + ++K+       T   LI  Y          +I+  + E  
Sbjct: 424 LLAVFGQNGLDSEVSGVFKEMKKAGYIPERDTYVSLISSYSRCGLFDLAMQIYKRMMEAG 483

Query: 265 --PNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATE-QYNSVISVYCKNGFID 321
             P+V + + VL+  A  R  +  +AE+L+ EM+  +  K  E  Y+S++  Y     +D
Sbjct: 484 IYPDVSTYNAVLS--ALARGGRWEQAEKLFAEMEE-RDCKPDEYSYSSLLHAYANAKRLD 540

Query: 322 KASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKA-LELGMKLIT---------- 370
           K   L  ++     +P+    + L L   K N + E  KA LEL  K  +          
Sbjct: 541 KMKALSDDIYSERIEPHNWLVKTLVLVNSKVNNLAEAEKAFLELRQKRCSLDINVLNAMV 600

Query: 371 -----TKKVRSSTPWLE------------TTLSIIEIFAEKGDVGNAENLFEELKKANYT 413
                 + VR     L             T  S++ +++  GD    EN+  E+K +   
Sbjct: 601 SIYGKNRMVRKVEKILSLMKESAINLSAATYNSLMHMYSRLGDCEKCENILTEIKSSGVR 660

Query: 414 KYTFVYNTLIKAY-VKAKINDPN-LLRRMILGGARPDAETYSLL 455
              + YNT+I AY  K ++ + + L   M   G +PD  TY++ 
Sbjct: 661 PDRYSYNTVIYAYGRKGQMKEASRLFSEMKCSGLKPDVVTYNIF 704



 Score = 52.0 bits (123), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 48/211 (22%), Positives = 85/211 (40%), Gaps = 10/211 (4%)

Query: 248 LAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQY 307
           +A+   L    A +   P   + +Y   + AF R  +   A  ++  M       A   Y
Sbjct: 151 MARAGRLAEASALLDAAPGPDAGAYTALVSAFSRAGRFRDAVAVFRRMVDSGVQPAIVTY 210

Query: 308 NSVISVYCKNGFI-DKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGM 366
           N V+ VY K      +   L+  M  +G  P+  TY  L   C +  L +E  +  +   
Sbjct: 211 NVVLHVYSKMAVPWKEVVELVASMKEHGVAPDRYTYNTLISCCRRRALYKEAAQVFD--- 267

Query: 367 KLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAY 426
                 K     P   T  S+++++ +      A  + +E+++         YN+LI +Y
Sbjct: 268 ----EMKASGFEPDKVTFNSLLDVYGKARRHDEAIEVIQEMERVGCPPSVVTYNSLISSY 323

Query: 427 VKAKINDP--NLLRRMILGGARPDAETYSLL 455
           VK  + +    L + M + G +PD  TY+ L
Sbjct: 324 VKDGLLEQAVALKQEMEVKGMKPDVVTYTTL 354


>gi|297725689|ref|NP_001175208.1| Os07g0491500 [Oryza sativa Japonica Group]
 gi|255677777|dbj|BAH93936.1| Os07g0491500, partial [Oryza sativa Japonica Group]
          Length = 654

 Score = 72.8 bits (177), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 77/344 (22%), Positives = 144/344 (41%), Gaps = 14/344 (4%)

Query: 119 KKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKA-DKVAPHVSTFHILMKIEAN 177
           K MR+ G   S L++N L+    + G   T  N+   M   D+V P V +++IL+K    
Sbjct: 207 KAMRLAGVEPSRLIYNCLLDGLVNAGLLDTAVNVFDAMSTEDQVRPDVVSYNILIKGYCR 266

Query: 178 DHNIEGLMKVYSDMK-RSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWS 236
                  M   S+M+ ++++ P++V+Y  L   H     + V     + +E+   GN+  
Sbjct: 267 AGRAHDAMARLSEMQEQAKLTPDKVTYLTLMQCHYSEGTFPVCIGLFQEMEERGMGNDIP 326

Query: 237 TLDVLIILYGYLAKGKDLERIWATVQELPN---VRSKSYVLAIEAFGRIAQVSRAEELWL 293
               ++++      GK  E +    + L       +  Y   I++ G+  +   A  L+ 
Sbjct: 327 QHAYVLVIGALCKDGKPFEGMAVFERMLKRGCAANAAIYTALIDSMGKFGREKEAMALFE 386

Query: 294 EMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSN 353
            M+       +  Y  +++  C+ G +D+A    +     G   NAI Y  L  G  K+ 
Sbjct: 387 RMKDSGLKLDSVTYGVIVNCLCRFGKLDEAVACFRSCQEKGIAVNAIFYTSLIDGFGKAG 446

Query: 354 LVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYT 413
           +V++   + EL  ++I    V  S  +      +I+  A+ G + +A  L++ ++     
Sbjct: 447 MVDQ---SKELFEEMIAKGFVPDSYCY----NVLIDGLAKSGRMDDACALYKRMEDDGCD 499

Query: 414 KYTFVYNTLIKAYVKAKINDPNL--LRRMILGGARPDAETYSLL 455
           +  + Y  LI    K   N+  L     MI  G  P A  +  L
Sbjct: 500 QTVYTYTILIDGLFKEHKNEEALKFWDAMIDKGITPTAAAFRTL 543


>gi|302757245|ref|XP_002962046.1| hypothetical protein SELMODRAFT_76034 [Selaginella moellendorffii]
 gi|300170705|gb|EFJ37306.1| hypothetical protein SELMODRAFT_76034 [Selaginella moellendorffii]
          Length = 465

 Score = 72.8 bits (177), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 65/335 (19%), Positives = 132/335 (39%), Gaps = 37/335 (11%)

Query: 96  LLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQ 155
           + +N L+  C  +  ++++   ++KM   G     + +N L+      GR +    +L +
Sbjct: 153 ITFNTLISGCCREKNLEMADSLLQKMAASGVKADVVTYNTLMDGLCKAGRLQEAEQLLER 212

Query: 156 MKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSY-CILATAHAVAR 214
           MKA   AP V  +   +        +    +V   M+ S  +PN V+Y  IL       +
Sbjct: 213 MKASGCAPDVVAYSSFVYGLCKSGKVLDAHQVLEQMRDSHHDPNVVTYNTILDGLCKSGK 272

Query: 215 LYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSKSYVL 274
           +    +T +E +E+ M  ++   L+V+                              Y  
Sbjct: 273 I----DTALEMMEQ-MASSDGCGLNVV-----------------------------GYST 298

Query: 275 AIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNG 334
            ++   ++ +   A  +   M           Y+S+++  CK G I++A   ++EM+M G
Sbjct: 299 VVDGLCKLGRTQEARSVMEAMARAGCRPDVVTYSSLVNGLCKAGKIEEAVEAVREMAMEG 358

Query: 335 CKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEK 394
           CKPNA+TY  L  G      + E  + +E               P + T  ++I    + 
Sbjct: 359 CKPNAVTYCSLVHGLCSCGRLAEAERMVE--EMSSGGGGGHHCPPSVSTYNALIGGLCKA 416

Query: 395 GDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKA 429
           G + +A   F+ ++          Y+T+++   ++
Sbjct: 417 GRIDDALKFFQRMRSQGCDPDGVSYSTIVEGLARS 451



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 77/349 (22%), Positives = 144/349 (41%), Gaps = 37/349 (10%)

Query: 125 GHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILM----KIEANDHN 180
           G   + + FN L+   S  GR      +L  M A  + P+V +++ L+    K+E   H 
Sbjct: 5   GCPPNSVTFNALVNGFSKQGRPGDCERLLETMAARDIQPNVVSYNGLLEGLCKLE-RWHE 63

Query: 181 IEGLMKVYSDM--KRSEVEPNEVSYCILATAHAVA-RLYTVAETYVEALEKSMTGNNWST 237
            E L++   DM  +     P+ V+Y  L + +  A ++    E   E + + +  +    
Sbjct: 64  AEELVR---DMISRGGRSTPDMVTYSTLLSGYCKAGKVEESRELLKEVISRGLRPDALMY 120

Query: 238 LDVLIILYGYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQS 297
             V+  L       K      A       +R+      I     I+   R + L +    
Sbjct: 121 TKVVASLC------KSARLGEALELLEEMIRAGCCPTLITFNTLISGCCREKNLEMADSL 174

Query: 298 VKQLKATE------QYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFK 351
           ++++ A+        YN+++   CK G + +A  LL+ M  +GC P+ + Y     G  K
Sbjct: 175 LQKMAASGVKADVVTYNTLMDGLCKAGRLQEAEQLLERMKASGCAPDVVAYSSFVYGLCK 234

Query: 352 SNLVEEGFKALELGMKLITTKKVRSS--TPWLETTLSIIEIFAEKGDVGNAENLFEELKK 409
           S  V +  + LE         ++R S   P + T  +I++   + G +  A  + E++  
Sbjct: 235 SGKVLDAHQVLE---------QMRDSHHDPNVVTYNTILDGLCKSGKIDTALEMMEQMAS 285

Query: 410 ANYTKYTFV-YNTLIKAYVK-AKINDP-NLLRRMILGGARPDAETYSLL 455
           ++      V Y+T++    K  +  +  +++  M   G RPD  TYS L
Sbjct: 286 SDGCGLNVVGYSTVVDGLCKLGRTQEARSVMEAMARAGCRPDVVTYSSL 334


>gi|357477483|ref|XP_003609027.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355510082|gb|AES91224.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 583

 Score = 72.8 bits (177), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 86/362 (23%), Positives = 153/362 (42%), Gaps = 41/362 (11%)

Query: 116 EYMKKMRVLGHSISYLVFNRLI---ILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILM 172
           + ++ M+  G S + + +N L+       S G+       +++M A+K+ P+  TF+ L+
Sbjct: 221 DAIEDMKAWGISPNVVTYNTLVDGYCKRGSAGKMYKAEAFMKEMLANKICPNEVTFNTLI 280

Query: 173 KIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHA-VARLYTVAETYVEALEKSMT 231
                D N+    K + +M++  ++PN V+Y  L        +L    + + + +   + 
Sbjct: 281 DGFCKDENVAAAKKAFEEMQKQGLKPNIVTYNSLINGLCNNGKLEEAIDLWDKMVGLGLK 340

Query: 232 GNNWSTLDVLIILYGYLAKG-------KDLERIWATV--QEL-PNVRSKSYVLAIEAFGR 281
            N        I+ Y  L  G       K+  +++  V  QEL PNV   ++   I+A+ +
Sbjct: 341 PN--------IVTYNALINGFCKKKMMKEATKVFDDVSKQELVPNVI--TFNTMIDAYCK 390

Query: 282 IAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAIT 341
              +     L   M     L     YN +I+  C+   +  A  LL EM   G K + +T
Sbjct: 391 EGMMEEGFSLCSSMLDEGILPNVSTYNCLIAGLCRKQDLQAAKELLNEMENKGLKGDVVT 450

Query: 342 YRHLALGCFKSNLVEEGFKAL----ELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDV 397
           Y  L  G  K++      K L     LG+K           P   T  ++++ +  +G +
Sbjct: 451 YNILIDGLCKNDKSRNAEKLLNEMFNLGLK-----------PNHVTYNTLMDGYCMEGKL 499

Query: 398 GNAENLFEELKKANYTKYTFVYNTLIKAYVKA-KINDPN-LLRRMILGGARPDAETYSLL 455
             A N+   ++K         YN LIK Y K  K+   N LL  M+  G  P+  TY ++
Sbjct: 500 KAALNVRTRMEKERKQPNVVTYNVLIKGYCKINKLEAANGLLNEMLEKGLNPNRTTYDIV 559

Query: 456 KL 457
           +L
Sbjct: 560 RL 561



 Score = 58.9 bits (141), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 82/383 (21%), Positives = 143/383 (37%), Gaps = 56/383 (14%)

Query: 126 HSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPH-----------------VSTF 168
           H++S  VF+ L++    PG    I ++L       +  H                 +++ 
Sbjct: 110 HTVSS-VFHSLLLDGGRPGATALIIDMLVLAYVKNLELHCAYEAFTRAKDYGFKLSLTSC 168

Query: 169 HILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEK 228
           + L+     ++ I  +  VY +M +  +  N  ++ I       A     AE  +E ++ 
Sbjct: 169 NPLLSALVKENKIGDVEYVYKEMIKRRIHTNLNTFNIFINGLCRAGKLNKAEDAIEDMKA 228

Query: 229 SMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQEL------PNVRSKSYVLAIEAFGRI 282
                N  T + L+  Y        + +  A ++E+      PN    ++   I+ F + 
Sbjct: 229 WGISPNVVTYNTLVDGYCKRGSAGKMYKAEAFMKEMLANKICPN--EVTFNTLIDGFCKD 286

Query: 283 AQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITY 342
             V+ A++ + EMQ          YNS+I+  C NG +++A  L  +M   G KPN +TY
Sbjct: 287 ENVAAAKKAFEEMQKQGLKPNIVTYNSLINGLCNNGKLEEAIDLWDKMVGLGLKPNIVTY 346

Query: 343 RHLALGCFKSNLVEEGFKA----------------------------LELGMKLITTKKV 374
             L  G  K  +++E  K                             +E G  L ++   
Sbjct: 347 NALINGFCKKKMMKEATKVFDDVSKQELVPNVITFNTMIDAYCKEGMMEEGFSLCSSMLD 406

Query: 375 RSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVK--AKIN 432
               P + T   +I     K D+  A+ L  E++          YN LI    K     N
Sbjct: 407 EGILPNVSTYNCLIAGLCRKQDLQAAKELLNEMENKGLKGDVVTYNILIDGLCKNDKSRN 466

Query: 433 DPNLLRRMILGGARPDAETYSLL 455
              LL  M   G +P+  TY+ L
Sbjct: 467 AEKLLNEMFNLGLKPNHVTYNTL 489


>gi|224095732|ref|XP_002310456.1| predicted protein [Populus trichocarpa]
 gi|222853359|gb|EEE90906.1| predicted protein [Populus trichocarpa]
          Length = 721

 Score = 72.8 bits (177), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 80/389 (20%), Positives = 152/389 (39%), Gaps = 36/389 (9%)

Query: 94  NELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNIL 153
           + +LY  ++    +  + + +++++ +MR      + L +  L+    +  +      IL
Sbjct: 41  DTVLYTKMISGLCEASLFEEAMDFLTRMRASSCLPNVLTYRILLCGCLNKEKLGRCKRIL 100

Query: 154 RQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVA 213
             M  +   P    F+ L+       +     K+   M +   +P  V Y IL      +
Sbjct: 101 SMMITEGCYPSPRIFNSLVHAYCRSGDYAYAYKLLKKMVQCGCQPGYVVYNILIGGICSS 160

Query: 214 R------LYTVAETYVEALEKSMTGN--NWSTLDVLIILYGYLAKGKDLERIWATVQELP 265
                  L    + Y E LE  +  N  N S     +   G   K  ++ R   +   +P
Sbjct: 161 EEPGKDVLDLAEKAYGEMLEAGVVLNKVNISNFSRCLCGIGKFEKAYNVIREMMSKGFIP 220

Query: 266 NVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASG 325
           +  + S V+        ++V +A +L+ EM+          Y ++I  +CK GFI++A  
Sbjct: 221 DTSTYSKVIGY--LCNASKVEKAFQLFQEMKRNGIAPDVYVYTTLIDSFCKAGFIEQARN 278

Query: 326 LLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTL 385
              EM  +GC PN +TY  L     KS  V +  +  E+ +        +  TP + T  
Sbjct: 279 WFDEMERDGCAPNVVTYTALIHAYLKSRKVSKANEVYEMMLS-------KGCTPNIVTYT 331

Query: 386 SIIEIFAEKGDVGNAENLFEELKKANY-----------------TKYTFVYNTLIKAYVK 428
           ++I+   + G +  A  +++ +KK N                      F Y  L+    K
Sbjct: 332 ALIDGLCKAGKIEKASQIYKIMKKENVEIPDVDMHFRVVDGASNEPNVFTYGALVDGLCK 391

Query: 429 A-KINDP-NLLRRMILGGARPDAETYSLL 455
           A ++ +  +LL+ M + G  P+   Y  L
Sbjct: 392 AYQVKEARDLLKSMSVEGCEPNHVVYDAL 420



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 77/330 (23%), Positives = 133/330 (40%), Gaps = 32/330 (9%)

Query: 60  PKELDYSYLLEFTIKNHGISQGEKLFCCIPKD--YQNELLYNNLVIACLDKGVIKLSLEY 117
           P    Y+ L++   K   I Q    F  + +D    N + Y  L+ A L    +  + E 
Sbjct: 255 PDVYVYTTLIDSFCKAGFIEQARNWFDEMERDGCAPNVVTYTALIHAYLKSRKVSKANEV 314

Query: 118 MKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVA-PHVSTFHILMKIEA 176
            + M   G + + + +  LI      G+ +    I + MK + V  P V     ++   +
Sbjct: 315 YEMMLSKGCTPNIVTYTALIDGLCKAGKIEKASQIYKIMKKENVEIPDVDMHFRVVDGAS 374

Query: 177 NDHNI-------EGLMKVYS---------DMKRSEVEPNEVSY-CILATAHAVARLYTVA 219
           N+ N+       +GL K Y           M     EPN V Y  ++       +L    
Sbjct: 375 NEPNVFTYGALVDGLCKAYQVKEARDLLKSMSVEGCEPNHVVYDALIDGCCKAGKLDEAQ 434

Query: 220 ETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQEL------PNVRSKSYV 273
           E +   LE     N ++   ++  L+    K K L+     + ++      PNV    Y 
Sbjct: 435 EVFTTMLECGYDPNVYTYSSLIDRLF----KDKRLDLALKVLSKMLENSCAPNVVI--YT 488

Query: 274 LAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMN 333
             I+   ++ +   A +L + M+          Y ++I  + K+G ++K   LL++MS  
Sbjct: 489 EMIDGLCKVGKTDEAYKLMVMMEEKGCNPNVVTYTAMIDGFGKSGRVEKCLELLQQMSSK 548

Query: 334 GCKPNAITYRHLALGCFKSNLVEEGFKALE 363
           GC PN +TYR L   C  + L++E  K LE
Sbjct: 549 GCAPNFVTYRVLINHCCSTGLLDEAHKLLE 578



 Score = 45.8 bits (107), Expect = 0.048,   Method: Compositional matrix adjust.
 Identities = 68/314 (21%), Positives = 111/314 (35%), Gaps = 43/314 (13%)

Query: 94  NELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNIL 153
           N   Y  LV        +K + + +K M V G   +++V++ LI      G+      + 
Sbjct: 378 NVFTYGALVDGLCKAYQVKEARDLLKSMSVEGCEPNHVVYDALIDGCCKAGKLDEAQEVF 437

Query: 154 RQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVA 213
             M      P+V T+  L+     D  ++  +KV S M  +   PN V Y        + 
Sbjct: 438 TTMLECGYDPNVYTYSSLIDRLFKDKRLDLALKVLSKMLENSCAPNVVIY--TEMIDGLC 495

Query: 214 RLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSKSYV 273
           ++    E Y   +     G N                              PNV +  Y 
Sbjct: 496 KVGKTDEAYKLMVMMEEKGCN------------------------------PNVVT--YT 523

Query: 274 LAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMN 333
             I+ FG+  +V +  EL  +M S         Y  +I+  C  G +D+A  LL+EM   
Sbjct: 524 AMIDGFGKSGRVEKCLELLQQMSSKGCAPNFVTYRVLINHCCSTGLLDEAHKLLEEMKQT 583

Query: 334 GCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAE 393
               +   YR +  G F    +   + + E+            S P       +I+ F +
Sbjct: 584 YWPRHVAGYRKVIEG-FNREFIASLYLSFEISE--------NDSVPVAPVYRVLIDNFIK 634

Query: 394 KGDVGNAENLFEEL 407
            G +  A  L EEL
Sbjct: 635 AGRLEIALELNEEL 648


>gi|255661144|gb|ACU25741.1| pentatricopeptide repeat-containing protein [Verbena hastata]
          Length = 426

 Score = 72.8 bits (177), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 74/322 (22%), Positives = 149/322 (46%), Gaps = 22/322 (6%)

Query: 98  YNNLVIACLDKGVIKLSLEYMKKM---RVLGHSISYLVFNRLIILNSSPGRRKTIPNILR 154
           Y+ L+     +G+   +L +++KM   RV G  + Y   + LI L+          +I  
Sbjct: 12  YSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLY---SNLIELSRKLCDYSKAISIFS 68

Query: 155 QMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVAR 214
           ++K     P +  ++ ++ +            + S+M+ + V PN  SY  L T +   +
Sbjct: 69  RLKRSGFMPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTASYSTLLTMYVENK 128

Query: 215 LYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQEL---PNVRSKS 271
            +  A +    + +     + +T +++I +YG L   K+ ++++  ++++   PNV S +
Sbjct: 129 KFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYN 188

Query: 272 YVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMS 331
            +L +  +G       A  L+  MQ     +    YNS++ +Y K    +KA+ L++EM 
Sbjct: 189 TLLRV--YGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQ 246

Query: 332 MNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTL--SIIE 389
             G +PN+ITY         S ++    K  +L    +  +K+RSS   ++  L  ++I 
Sbjct: 247 NRGIEPNSITY---------STIISIWGKVGKLDRAAMLFQKLRSSGVDIDQVLYQTMIV 297

Query: 390 IFAEKGDVGNAENLFEELKKAN 411
            +   G V +A+ L  ELK+ +
Sbjct: 298 AYERAGLVAHAKRLLHELKRPD 319



 Score = 55.8 bits (133), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 76/370 (20%), Positives = 162/370 (43%), Gaps = 20/370 (5%)

Query: 65  YSYLLEFTIKNHGISQGEKLFCCIPKD-YQNELLYNNLVIACLDKG-VIKLSLEYMKKMR 122
           YS L+E + K    S+   +F  + +  +  +L+  N +I    K  + + +   + +MR
Sbjct: 47  YSNLIELSRKLCDYSKAISIFSRLKRSGFMPDLVAYNAMINVFGKAKLFREARSLISEMR 106

Query: 123 VLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIE 182
             G + +   ++ L+ +     +     ++  +M+  K    ++T +I++ +       +
Sbjct: 107 TAGVTPNTASYSTLLTMYVENKKFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAK 166

Query: 183 GLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLI 242
              K++  M++  +EPN VSY  L   +  A L+  A      +++     N  T + ++
Sbjct: 167 EADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMM 226

Query: 243 ILYGYLAKGKDLERIWATVQELPN----VRSKSYVLAIEAFGRIAQVSRAEELWLEMQSV 298
           ++YG   K  + E+    +QE+ N      S +Y   I  +G++ ++ RA  L+ +++S 
Sbjct: 227 MIYG---KTLEHEKANNLIQEMQNRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSS 283

Query: 299 KQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEG 358
                   Y ++I  Y + G +  A  LL E+      P  I    LA     +  +EE 
Sbjct: 284 GVDIDQVLYQTMIVAYERAGLVAHAKRLLHELKRPDNIPRDIAIHILA----GAGRIEE- 338

Query: 359 FKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFV 418
             A  +  + I   +V+  T +      +I +F++    GN   +F++++   Y   + V
Sbjct: 339 --ATWVFRQAIDAGEVKDITVFER----MIHLFSKYKKYGNVVEVFDKMRGLGYFPDSNV 392

Query: 419 YNTLIKAYVK 428
              ++ AY K
Sbjct: 393 IALILNAYGK 402



 Score = 41.6 bits (96), Expect = 0.85,   Method: Compositional matrix adjust.
 Identities = 36/156 (23%), Positives = 68/156 (43%), Gaps = 7/156 (4%)

Query: 276 IEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGC 335
           IE   ++   S+A  ++  ++    +     YN++I+V+ K     +A  L+ EM   G 
Sbjct: 51  IELSRKLCDYSKAISIFSRLKRSGFMPDLVAYNAMINVFGKAKLFREARSLISEMRTAGV 110

Query: 336 KPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKG 395
            PN  +Y  L        +  E  K LE        ++++     L T   +I+++ + G
Sbjct: 111 TPNTASYSTLL------TMYVENKKFLEALSVFAEMREIKCLLD-LTTCNIMIDVYGQLG 163

Query: 396 DVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKI 431
               A+ LF  ++K         YNTL++ Y  A++
Sbjct: 164 MAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAEL 199


>gi|449481246|ref|XP_004156125.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At2g02150-like [Cucumis
           sativus]
          Length = 822

 Score = 72.8 bits (177), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 78/365 (21%), Positives = 151/365 (41%), Gaps = 18/365 (4%)

Query: 98  YNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMK 157
           YN ++     +G ++ S     +MR +G S   + +N LI      G  + + ++  +MK
Sbjct: 233 YNVMIDYLCKEGDLENSRRLFVQMREMGLSPDVVTYNSLIDGYGKVGSLEEVASLFNEMK 292

Query: 158 ADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYT 217
                P + T++ L+        +    + +S+MK + ++PN V+Y  L  A     +  
Sbjct: 293 DVGCVPDIITYNGLINCYCKFEKMPRAFEYFSEMKNNGLKPNVVTYSTLIDAFCKEGMMQ 352

Query: 218 VAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSK----SYV 273
            A   +  + ++    N  T   LI       K  +L   W  + ++     K    +Y 
Sbjct: 353 GAIKLLXDMRRTGLLPNEFTYTSLI---DANCKAGNLTEAWKLLNDMLQAGVKLNIVTYT 409

Query: 274 LAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMN 333
             ++   +  ++  AEE++  M         + Y +++  Y K   ++ A  +LK+M+  
Sbjct: 410 ALLDGLCKAGRMIEAEEVFRSMLKDGISPNQQVYTALVHGYIKAERMEDAMKILKQMTEC 469

Query: 334 GCKPNAITYRHLALG-CFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFA 392
             KP+ I Y  +  G C +  L E      E+  + I+   V S+T        II+ + 
Sbjct: 470 NIKPDLILYGSIIWGHCSQRKLEETKLILEEMKSRGISANPVISTT--------IIDAYF 521

Query: 393 EKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKIND--PNLLRRMILGGARPDAE 450
           + G   +A N F+E++          Y  LI    +A I +   +   RM+  G +P+  
Sbjct: 522 KAGKSSDALNFFQEMQDVGVEATIVTYCVLIDGLCEAGIVELAVDYFCRMLSLGLQPNVA 581

Query: 451 TYSLL 455
            Y+ L
Sbjct: 582 VYTSL 586



 Score = 63.2 bits (152), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 82/382 (21%), Positives = 149/382 (39%), Gaps = 19/382 (4%)

Query: 33  INRLRKLQLNKRALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQGE-KLFCCIPKD 91
           IN   K +   RA E     ++    +P  + YS L++   K  G+ QG  KL   + + 
Sbjct: 307 INCYCKFEKMPRAFEYFS-EMKNNGLKPNVVTYSTLIDAFCK-EGMMQGAIKLLXDMRRT 364

Query: 92  --YQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTI 149
               NE  Y +L+ A    G +  + + +  M   G  ++ + +  L+      GR    
Sbjct: 365 GLLPNEFTYTSLIDANCKAGNLTEAWKLLNDMLQAGVKLNIVTYTALLDGLCKAGRMIEA 424

Query: 150 PNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATA 209
             + R M  D ++P+   +  L+        +E  MK+   M    ++P+ + Y  +   
Sbjct: 425 EEVFRSMLKDGISPNQQVYTALVHGYIKAERMEDAMKILKQMTECNIKPDLILYGSIIWG 484

Query: 210 HAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRS 269
           H   R   + ET +   E    G + + +    I+  Y   GK  + +    QE+ +V  
Sbjct: 485 HCSQR--KLEETKLILEEMKSRGISANPVISTTIIDAYFKAGKSSDAL-NFFQEMQDVGV 541

Query: 270 K----SYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASG 325
           +    +Y + I+       V  A + +  M S+        Y S+I   C N  I+ A  
Sbjct: 542 EATIVTYCVLIDGLCEAGIVELAVDYFCRMLSLGLQPNVAVYTSLIDGLCXNNCIESAKK 601

Query: 326 LLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTL 385
           L  EM   G  P+   +  L  G  K   ++E        + LI+     +    L    
Sbjct: 602 LFDEMQCRGMTPDITAFTALIDGNLKHGNLQE-------ALVLISRMTELAIEFDLHVYT 654

Query: 386 SIIEIFAEKGDVGNAENLFEEL 407
           S++  F++ G++  A   F E+
Sbjct: 655 SLVSGFSQCGELHQARKFFNEM 676



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 45/187 (24%), Positives = 84/187 (44%), Gaps = 9/187 (4%)

Query: 271 SYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEM 330
           +Y + I+   +   +  +  L+++M+ +        YNS+I  Y K G +++ + L  EM
Sbjct: 232 TYNVMIDYLCKEGDLENSRRLFVQMREMGLSPDVVTYNSLIDGYGKVGSLEEVASLFNEM 291

Query: 331 SMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEI 390
              GC P+ ITY  L + C+        F+ +    +  +  K     P + T  ++I+ 
Sbjct: 292 KDVGCVPDIITYNGL-INCYCK------FEKMPRAFEYFSEMKNNGLKPNVVTYSTLIDA 344

Query: 391 FAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAK--INDPNLLRRMILGGARPD 448
           F ++G +  A  L  ++++       F Y +LI A  KA        LL  M+  G + +
Sbjct: 345 FCKEGMMQGAIKLLXDMRRTGLLPNEFTYTSLIDANCKAGNLTEAWKLLNDMLQAGVKLN 404

Query: 449 AETYSLL 455
             TY+ L
Sbjct: 405 IVTYTAL 411



 Score = 45.4 bits (106), Expect = 0.063,   Method: Compositional matrix adjust.
 Identities = 56/257 (21%), Positives = 97/257 (37%), Gaps = 24/257 (9%)

Query: 202 SYCILATAHAVARLYTVA-ETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWAT 260
           SYCI+      AR+YT A +T  E +  S     +   ++              + +W+T
Sbjct: 106 SYCIIVHLVFRARMYTDAHDTVKEVIMNSRMDMGFPVCNIF-------------DMLWST 152

Query: 261 VQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFI 320
            + +    S  + +    F  +  +  A E +  M++ + L      N ++    K+G  
Sbjct: 153 -RNICVSGSGVFDVLFSVFVELGLLEEANECFSRMRNFRTLPKARSCNFLLHRLSKSGNG 211

Query: 321 DKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPW 380
                   +M   G  P+  TY  +        L +EG   LE   +L    +    +P 
Sbjct: 212 QLVRKFFNDMIGAGIAPSVFTYNVMI-----DYLCKEG--DLENSRRLFVQMREMGLSPD 264

Query: 381 LETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKINDPNL--LR 438
           + T  S+I+ + + G +    +LF E+K          YN LI  Y K +          
Sbjct: 265 VVTYNSLIDGYGKVGSLEEVASLFNEMKDVGCVPDIITYNGLINCYCKFEKMPRAFEYFS 324

Query: 439 RMILGGARPDAETYSLL 455
            M   G +P+  TYS L
Sbjct: 325 EMKNNGLKPNVVTYSTL 341


>gi|255661182|gb|ACU25760.1| pentatricopeptide repeat-containing protein [Phyla dulcis]
          Length = 426

 Score = 72.8 bits (177), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 72/319 (22%), Positives = 147/319 (46%), Gaps = 16/319 (5%)

Query: 98  YNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMK 157
           Y+ L+     +G+   +L +++KM         ++++ LI L+          +I  ++K
Sbjct: 12  YSTLITHFGKEGLFDAALSWLQKMEQDQVPGDLVLYSNLIELSRKLCDYSKAISIFSRLK 71

Query: 158 ADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYT 217
                P +  ++ ++ +            + S+MK + V PN  SY  L T +   + + 
Sbjct: 72  NSGYTPDLVAYNAMIIVFGKAKLFREARSLISEMKTAGVIPNTTSYSTLLTMYVENKKFL 131

Query: 218 VAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQEL---PNVRSKSYVL 274
            A +    + +     + +T +++I +YG L   K+ ++++  ++++   PNV S + +L
Sbjct: 132 EALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTLL 191

Query: 275 AIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNG 334
            +  +G       A  L+  MQ     +    YNS+I +Y K    +KA+ L++EM   G
Sbjct: 192 RV--YGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMIMIYGKTLEHEKANNLIQEMQSRG 249

Query: 335 CKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTL--SIIEIFA 392
            +PN+ITY         S ++    K  +L    +  +K+RSS   ++  L  ++I  + 
Sbjct: 250 IEPNSITY---------STIISIWGKVGKLDRAAMLFQKLRSSGVEIDQILFQTMIVAYE 300

Query: 393 EKGDVGNAENLFEELKKAN 411
             G V +A+ L  ELK+ +
Sbjct: 301 RAGLVAHAKRLLHELKRPD 319



 Score = 39.7 bits (91), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 38/158 (24%), Positives = 68/158 (43%), Gaps = 11/158 (6%)

Query: 276 IEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGC 335
           IE   ++   S+A  ++  +++         YN++I V+ K     +A  L+ EM   G 
Sbjct: 51  IELSRKLCDYSKAISIFSRLKNSGYTPDLVAYNAMIIVFGKAKLFREARSLISEMKTAGV 110

Query: 336 KPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLS--IIEIFAE 393
            PN  +Y  L        +  E  K LE    L    ++R     L+ T    +I+++ +
Sbjct: 111 IPNTTSYSTLL------TMYVENKKFLE---ALSVFSEMREIKCLLDLTTCNIMIDVYGQ 161

Query: 394 KGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKI 431
            G    A+ LF  ++K         YNTL++ Y  A++
Sbjct: 162 LGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAEL 199


>gi|34393621|dbj|BAC83297.1| putative fertility restorer homologue [Oryza sativa Japonica Group]
          Length = 657

 Score = 72.8 bits (177), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 77/344 (22%), Positives = 144/344 (41%), Gaps = 14/344 (4%)

Query: 119 KKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKA-DKVAPHVSTFHILMKIEAN 177
           K MR+ G   S L++N L+    + G   T  N+   M   D+V P V +++IL+K    
Sbjct: 210 KAMRLAGVEPSRLIYNCLLDGLVNAGLLDTAVNVFDAMSTEDQVRPDVVSYNILIKGYCR 269

Query: 178 DHNIEGLMKVYSDMK-RSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWS 236
                  M   S+M+ ++++ P++V+Y  L   H     + V     + +E+   GN+  
Sbjct: 270 AGRAHDAMARLSEMQEQAKLTPDKVTYLTLMQCHYSEGTFPVCIGLFQEMEERGMGNDIP 329

Query: 237 TLDVLIILYGYLAKGKDLERIWATVQELPN---VRSKSYVLAIEAFGRIAQVSRAEELWL 293
               ++++      GK  E +    + L       +  Y   I++ G+  +   A  L+ 
Sbjct: 330 QHAYVLVIGALCKDGKPFEGMAVFERMLKRGCAANAAIYTALIDSMGKFGREKEAMALFE 389

Query: 294 EMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSN 353
            M+       +  Y  +++  C+ G +D+A    +     G   NAI Y  L  G  K+ 
Sbjct: 390 RMKDSGLKLDSVTYGVIVNCLCRFGKLDEAVACFRSCQEKGIAVNAIFYTSLIDGFGKAG 449

Query: 354 LVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYT 413
           +V++   + EL  ++I    V  S  +      +I+  A+ G + +A  L++ ++     
Sbjct: 450 MVDQ---SKELFEEMIAKGFVPDSYCY----NVLIDGLAKSGRMDDACALYKRMEDDGCD 502

Query: 414 KYTFVYNTLIKAYVKAKINDPNL--LRRMILGGARPDAETYSLL 455
           +  + Y  LI    K   N+  L     MI  G  P A  +  L
Sbjct: 503 QTVYTYTILIDGLFKEHKNEEALKFWDAMIDKGITPTAAAFRTL 546


>gi|255661178|gb|ACU25758.1| pentatricopeptide repeat-containing protein [Mulguraea scoparia]
          Length = 352

 Score = 72.8 bits (177), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 74/322 (22%), Positives = 149/322 (46%), Gaps = 22/322 (6%)

Query: 98  YNNLVIACLDKGVIKLSLEYMKKM---RVLGHSISYLVFNRLIILNSSPGRRKTIPNILR 154
           Y+ L+     +G+   +L +++KM   RV G  + Y   + LI L+          +I  
Sbjct: 12  YSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLY---SNLIELSXKLCDYSKAISIFS 68

Query: 155 QMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVAR 214
           ++K     P +  ++ ++ +            + S+M+ + V PN  SY  L T +   +
Sbjct: 69  RLKRSGFMPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVMPNTASYSTLLTMYVENK 128

Query: 215 LYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQEL---PNVRSKS 271
            +  A +    + +     + +T +++I +YG L   K+ ++++  ++++   PNV S +
Sbjct: 129 KFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYN 188

Query: 272 YVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMS 331
            +L +  +G       A  L+  MQ     +    YNS++ +Y K    +KA+ L++EM 
Sbjct: 189 TLLRV--YGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQ 246

Query: 332 MNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTL--SIIE 389
             G +PN+ITY         S ++    K  +L    +  +K+RSS   ++  L  ++I 
Sbjct: 247 NRGIEPNSITY---------STIISIWGKVGKLDRAAMLFQKLRSSGVEIDQVLYQTMIV 297

Query: 390 IFAEKGDVGNAENLFEELKKAN 411
            +   G V +A+ L  ELK+ +
Sbjct: 298 AYERAGLVAHAKRLLHELKRPD 319



 Score = 42.0 bits (97), Expect = 0.72,   Method: Compositional matrix adjust.
 Identities = 36/156 (23%), Positives = 68/156 (43%), Gaps = 7/156 (4%)

Query: 276 IEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGC 335
           IE   ++   S+A  ++  ++    +     YN++I+V+ K     +A  L+ EM   G 
Sbjct: 51  IELSXKLCDYSKAISIFSRLKRSGFMPDLVAYNAMINVFGKAKLFREARSLISEMRTAGV 110

Query: 336 KPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKG 395
            PN  +Y  L        +  E  K LE        ++++     L T   +I+++ + G
Sbjct: 111 MPNTASYSTLL------TMYVENKKFLEALSVFAEMREIKCLLD-LTTCNIMIDVYGQLG 163

Query: 396 DVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKI 431
               A+ LF  ++K         YNTL++ Y  A++
Sbjct: 164 MAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAEL 199


>gi|413948659|gb|AFW81308.1| hypothetical protein ZEAMMB73_549819 [Zea mays]
          Length = 795

 Score = 72.8 bits (177), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 87/404 (21%), Positives = 175/404 (43%), Gaps = 16/404 (3%)

Query: 59  RPKELDYSYLLEFTIKNHGISQGEKLFCCIPKDYQ--NELLYNNLVIACLDKGVIKLSLE 116
           +P  + YS L+++  K    ++   +F  + +  Q  N  +Y+ L+     KG +    +
Sbjct: 302 QPDVVTYSLLIQYYCKIGRCAEARSVFDSMVRKGQKPNSTIYHILLHGYATKGALIDVRD 361

Query: 117 YMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEA 176
            +  M   G    +  FN LI   +  G          +M+ + + P V ++  ++ I  
Sbjct: 362 LLDLMIRDGIPFEHRAFNILICAYAKHGAVDKAMTAFTEMRQNGLRPDVVSYSTVIHILC 421

Query: 177 NDHNIEGLMKVYSDMKRSEVEPNEVSYCILATA-HAVARLYTVAETYVEALEKSMTGNN- 234
               +E  +  ++ M    + PN +S+  L     ++     V E   E + + +  +  
Sbjct: 422 KTGRVEDAVYHFNQMVSEGLSPNIISFTSLIHGLCSIGEWKKVEELAFEMINRGIHPDAI 481

Query: 235 -WSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWL 293
             +T+   +   G + + +D   +   +   P+V   SY   I+ +  + ++  + +   
Sbjct: 482 FMNTIMDNLCKEGRVVEAQDFFDMVIHIGVKPDV--VSYNTLIDGYCFVGKMDESIKQLD 539

Query: 294 EMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSN 353
            M S+     +  YNS+++ Y KNG ++ A  L +EM     K  AIT   +  G F++ 
Sbjct: 540 RMVSIGLRPDSWTYNSLLNGYFKNGRVEDALALYREMFRKDVKFCAITSNIMLHGLFQAG 599

Query: 354 LVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYT 413
            +     A EL MK++     R +   +ET  +++    E   V  A  +FE+L+   + 
Sbjct: 600 RI---VAARELYMKMVD----RGTQLRIETYNTVLGGLCENSCVDEALRMFEDLRSKEFE 652

Query: 414 KYTFVYNTLIKAYVK-AKINDP-NLLRRMILGGARPDAETYSLL 455
                ++ +I A +K  +I++  +L   M+L G  PD  TYSL+
Sbjct: 653 LDVRTFSIVINALLKVGRIDEAKSLFSAMVLRGPVPDVITYSLM 696



 Score = 54.7 bits (130), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 52/198 (26%), Positives = 86/198 (43%), Gaps = 15/198 (7%)

Query: 265 PNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKAS 324
           PNV   SY   I+ F +  +V +A  L+ EM           YNS+I   CK   +DKA 
Sbjct: 198 PNV--VSYNTVIDGFFKEGEVDKAYFLFHEMMGQGLPPDVVTYNSLIDGLCKAQAMDKAV 255

Query: 325 GLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSS--TPWLE 382
            +L+ M   G  P+  TY  +  G      +EE  + L         KK+  S   P + 
Sbjct: 256 AILQHMFDKGVMPDTRTYNIMIRGYCSLGQLEEAVRLL---------KKMSGSGLQPDVV 306

Query: 383 TTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVK--AKINDPNLLRRM 440
           T   +I+ + + G    A ++F+ + +      + +Y+ L+  Y    A I+  +LL  M
Sbjct: 307 TYSLLIQYYCKIGRCAEARSVFDSMVRKGQKPNSTIYHILLHGYATKGALIDVRDLLDLM 366

Query: 441 ILGGARPDAETYSLLKLA 458
           I  G   +   +++L  A
Sbjct: 367 IRDGIPFEHRAFNILICA 384



 Score = 44.3 bits (103), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 39/155 (25%), Positives = 67/155 (43%), Gaps = 12/155 (7%)

Query: 306 QYNSVISVYCKNGFIDKASGLLKEMSMNG---CKPNAITYRHLALGCFKSNLVEEGFKAL 362
            YN++I   C      +A  LL  M+ +G   C PN ++Y  +  G FK   V++ +   
Sbjct: 164 SYNALIKGLCVEKKSQEALELLIHMTADGGYNCSPNVVSYNTVIDGFFKEGEVDKAYFLF 223

Query: 363 ELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTL 422
              M        +   P + T  S+I+   +   +  A  + + +        T  YN +
Sbjct: 224 HEMMG-------QGLPPDVVTYNSLIDGLCKAQAMDKAVAILQHMFDKGVMPDTRTYNIM 276

Query: 423 IKAYVK-AKINDP-NLLRRMILGGARPDAETYSLL 455
           I+ Y    ++ +   LL++M   G +PD  TYSLL
Sbjct: 277 IRGYCSLGQLEEAVRLLKKMSGSGLQPDVVTYSLL 311


>gi|47497141|dbj|BAD19190.1| zinc finger (CCCH-type) protein-like [Oryza sativa Japonica Group]
 gi|47497588|dbj|BAD19658.1| zinc finger (CCCH-type) protein-like [Oryza sativa Japonica Group]
          Length = 462

 Score = 72.4 bits (176), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 71/299 (23%), Positives = 129/299 (43%), Gaps = 16/299 (5%)

Query: 163 PHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVA-ET 221
           P V T++ L+        +E  + V   M+ + VEP+ V+Y  L    A   L   A + 
Sbjct: 45  PDVVTYNTLLAAHCRAAGLEAGLVVMGRMREAGVEPDAVTYNSLIAGAARRGLPIHALDL 104

Query: 222 YVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQE---LPNVRSKSYVLAIEA 278
           + E L   +  ++WS   ++  L+      +D  R++A + E    P     +Y   ++ 
Sbjct: 105 FDEMLRSGIAPDSWSYNPLMHCLF-RSGHPEDAYRVFADMAEKGIAPC--DTTYNTLLDG 161

Query: 279 FGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPN 338
             R      A  ++  +Q      +   YN++I+  C +G +  A  +L+E+      PN
Sbjct: 162 MFRAGYAMNAYRMFRYLQRAGLPVSIVTYNTMINGLCSSGKVGYARMVLRELGRTDHAPN 221

Query: 339 AITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVG 398
            ITY  +   CFK    E+G   L+  + L+    +    P+     ++I    +KG +G
Sbjct: 222 IITYTAVMKCCFKYGRFEQG---LDTFLSLLDRGYISDVYPY----CTVISALVKKGRLG 274

Query: 399 NAENLFEELKKANYTKYTFVYNTLIKAYVK-AKINDP-NLLRRMILGGARPDAETYSLL 455
            A N  + + +      +  YNTLI    +  K++D   L+  M  GG   D  T+++L
Sbjct: 275 EANNYCDLMLQNGSRLDSVCYNTLIHMRCQEGKLDDAFELVSMMEDGGLESDEYTFAIL 333



 Score = 42.4 bits (98), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 52/256 (20%), Positives = 101/256 (39%), Gaps = 15/256 (5%)

Query: 98  YNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIP----NIL 153
           YN L+ A      ++  L  M +MR  G     + +N LI    +   R+ +P    ++ 
Sbjct: 50  YNTLLAAHCRAAGLEAGLVVMGRMREAGVEPDAVTYNSLI----AGAARRGLPIHALDLF 105

Query: 154 RQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVA 213
            +M    +AP   +++ LM       + E   +V++DM    + P + +Y  L      A
Sbjct: 106 DEMLRSGIAPDSWSYNPLMHCLFRSGHPEDAYRVFADMAEKGIAPCDTTYNTLLDGMFRA 165

Query: 214 RLYTVAETYVEALEKSMTGNNWSTLDVLI---ILYGYLAKGKDLERIWATVQELPNVRSK 270
                A      L+++    +  T + +I      G +   + + R        PN+ + 
Sbjct: 166 GYAMNAYRMFRYLQRAGLPVSIVTYNTMINGLCSSGKVGYARMVLRELGRTDHAPNIITY 225

Query: 271 SYVL-AIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKE 329
           + V+     +GR  Q     + +L +     +     Y +VIS   K G + +A+     
Sbjct: 226 TAVMKCCFKYGRFEQ---GLDTFLSLLDRGYISDVYPYCTVISALVKKGRLGEANNYCDL 282

Query: 330 MSMNGCKPNAITYRHL 345
           M  NG + +++ Y  L
Sbjct: 283 MLQNGSRLDSVCYNTL 298


>gi|356549285|ref|XP_003543024.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g46100-like [Glycine max]
          Length = 479

 Score = 72.4 bits (176), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 80/340 (23%), Positives = 142/340 (41%), Gaps = 29/340 (8%)

Query: 126 HSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLM 185
           H    L+ +RL+ +N    + +    +L +MK +K       F  + +     H     +
Sbjct: 50  HETFGLIISRLVTVN----QFRPAEGMLERMKQEKCMVTEDIFLSICRGYGRVHRPLDAI 105

Query: 186 KVYSDMKRSEVEPNEVSYC----ILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVL 241
           +V+  M+  ++ P + +Y     IL   + V R       Y E  E  +     S++  L
Sbjct: 106 RVFHKMEGFQLRPTQKAYLTILDILVEENHVKRAIGF---YREMRELGIP----SSVVSL 158

Query: 242 IILYGYLAKGKD-LERIWATVQELPN----VRSKSYVLAIEAFGRIAQVSRAEELWLEMQ 296
            IL   L K K+ ++      QE+PN      S +Y   I    R+  +S A+EL+ EM+
Sbjct: 159 NILIKALCKNKETVDSALRIFQEMPNRGCQPDSYTYGTLINGLCRLGNISEAKELFKEME 218

Query: 297 SVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVE 356
                 +   Y S+I   C++  +D+A GLL+EM  N  +PN  TY  L  G  K     
Sbjct: 219 QKGFSASVVTYTSLIHGLCQSNNLDEAIGLLEEMKRNDIEPNVFTYSSLMDGLCKGGHSS 278

Query: 357 EGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYT 416
           +  + LE+  K       +   P + T  ++I    ++  +  A  + + ++        
Sbjct: 279 QAMQLLEVMDK-------KHHLPNMVTYSTLINGLCKERKLREAVEILDRMRIQGLKPNA 331

Query: 417 FVYNTLIKAYVKAKI--NDPNLLRRMILGGARPDAETYSL 454
            +Y  +I     A       N +  M+LGG  P+  ++SL
Sbjct: 332 GLYGKIISGLCAAGSYQEAANFIDEMVLGGISPNRASWSL 371



 Score = 52.0 bits (123), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 68/297 (22%), Positives = 118/297 (39%), Gaps = 22/297 (7%)

Query: 87  CIPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRR 146
           C P  Y     Y  L+      G I  + E  K+M   G S S + +  LI         
Sbjct: 187 CQPDSYT----YGTLINGLCRLGNISEAKELFKEMEQKGFSASVVTYTSLIHGLCQSNNL 242

Query: 147 KTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCIL 206
                +L +MK + + P+V T+  LM       +    M++   M +    PN V+Y  L
Sbjct: 243 DEAIGLLEEMKRNDIEPNVFTYSSLMDGLCKGGHSSQAMQLLEVMDKKHHLPNMVTYSTL 302

Query: 207 ATAHAVARLYTVAETYVEALEK-SMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQEL- 264
                  R    A   VE L++  + G   +      I+ G  A G   +     + E+ 
Sbjct: 303 INGLCKERKLREA---VEILDRMRIQGLKPNAGLYGKIISGLCAAGS-YQEAANFIDEMV 358

Query: 265 -----PNVRSKS-----YVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVY 314
                PN  S S     + + ++         RA +L+L M++       + ++ ++  +
Sbjct: 359 LGGISPNRASWSLHVRMHNMVVQGLCNNVDPPRAFQLYLSMRTRCISVEIDTFDCLVKCF 418

Query: 315 CKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKAL--ELGMKLI 369
           CK G + KA+ +L+EM ++GC P+   +  +  G +    V E  + L  EL  K +
Sbjct: 419 CKRGDLHKAARILEEMVLDGCIPDEGVWNVVIGGLWDRKKVREATEQLLVELQQKFV 475



 Score = 48.9 bits (115), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 66/327 (20%), Positives = 141/327 (43%), Gaps = 26/327 (7%)

Query: 111 IKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILR---QMKADKVAPHVST 167
           +K ++ + ++MR LG   S +  N  I++ +    ++T+ + LR   +M      P   T
Sbjct: 136 VKRAIGFYREMRELGIPSSVVSLN--ILIKALCKNKETVDSALRIFQEMPNRGCQPDSYT 193

Query: 168 FHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALE 227
           +  L+       NI    +++ +M++     + V+Y  L      +     A   +E ++
Sbjct: 194 YGTLINGLCRLGNISEAKELFKEMEQKGFSASVVTYTSLIHGLCQSNNLDEAIGLLEEMK 253

Query: 228 KSMTGNN---WSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQ 284
           ++    N   +S+L   +   G+ ++   L  +      LPN+   +Y   I    +  +
Sbjct: 254 RNDIEPNVFTYSSLMDGLCKGGHSSQAMQLLEVMDKKHHLPNM--VTYSTLINGLCKERK 311

Query: 285 VSRAEELWLEMQSVKQLKATEQ-YNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYR 343
           +  A E+ L+   ++ LK     Y  +IS  C  G   +A+  + EM + G  PN  ++ 
Sbjct: 312 LREAVEI-LDRMRIQGLKPNAGLYGKIISGLCAAGSYQEAANFIDEMVLGGISPNRASW- 369

Query: 344 HLALGCFKSNLVEEGF-------KALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGD 396
             +L     N+V +G        +A +L + +    + R  +  ++T   +++ F ++GD
Sbjct: 370 --SLHVRMHNMVVQGLCNNVDPPRAFQLYLSM----RTRCISVEIDTFDCLVKCFCKRGD 423

Query: 397 VGNAENLFEELKKANYTKYTFVYNTLI 423
           +  A  + EE+          V+N +I
Sbjct: 424 LHKAARILEEMVLDGCIPDEGVWNVVI 450


>gi|302809589|ref|XP_002986487.1| hypothetical protein SELMODRAFT_182414 [Selaginella moellendorffii]
 gi|300145670|gb|EFJ12344.1| hypothetical protein SELMODRAFT_182414 [Selaginella moellendorffii]
          Length = 773

 Score = 72.4 bits (176), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 67/327 (20%), Positives = 124/327 (37%), Gaps = 79/327 (24%)

Query: 132 VFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFH-ILMKIEANDHNIEGLMKVYSD 190
            F  LI      G+ +   ++L +MK ++V P++ T++ +L        + EGL+ +++ 
Sbjct: 119 AFTALINAYGRNGQYEASLHLLARMKKERVEPNLITYNTVLNACSKGGLDWEGLLNLFAQ 178

Query: 191 MKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAK 250
           M+   ++P+ ++Y  L +A +   L   A    + + +S                G +A 
Sbjct: 179 MRHEGIQPDLITYNTLLSACSSRGLVEQAAMVFKTMNES----------------GVVAD 222

Query: 251 GKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSV 310
                             + +Y   ++ F    Q+ R EEL  EM+          YNS+
Sbjct: 223 ------------------AVTYKSLVDTFAGSNQLGRVEELLREMEDEGNSPDIAGYNSL 264

Query: 311 ISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLIT 370
           I  Y   G +  A+G+ K+M   GC P+  TY                            
Sbjct: 265 IEAYADAGNVHGAAGVFKQMQRGGCAPDVETYS--------------------------- 297

Query: 371 TKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAK 430
                          +++ I+  +G      +LF ++K+ +       YN+LI+ + +  
Sbjct: 298 ---------------TLLRIYGNQGCFEQVRSLFSDMKELSTPPTVATYNSLIQVFGEGG 342

Query: 431 I--NDPNLLRRMILGGARPDAETYSLL 455
                 NL   M+  G +PD  TYS L
Sbjct: 343 YFQESINLFHDMVDSGVKPDDATYSAL 369



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 71/306 (23%), Positives = 122/306 (39%), Gaps = 33/306 (10%)

Query: 132 VFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDM 191
           ++  +I +    G  +    I   M  + V  +V  F  L+     +   E  + + + M
Sbjct: 84  IYTIMIGIMGREGLLEKCSEIFEDMPENDVKWNVYAFTALINAYGRNGQYEASLHLLARM 143

Query: 192 KRSEVEPNEVSY------CILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILY 245
           K+  VEPN ++Y      C          L   A+   E ++  +   N        +L 
Sbjct: 144 KKERVEPNLITYNTVLNACSKGGLDWEGLLNLFAQMRHEGIQPDLITYN-------TLLS 196

Query: 246 GYLAKG--KDLERIWATVQELPNVRSK-SYVLAIEAFGRIAQVSRAEELWLEMQSVKQLK 302
              ++G  +    ++ T+ E   V    +Y   ++ F    Q+ R EEL  EM+      
Sbjct: 197 ACSSRGLVEQAAMVFKTMNESGVVADAVTYKSLVDTFAGSNQLGRVEELLREMEDEGNSP 256

Query: 303 ATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLA-----LGCFKSNLVEE 357
               YNS+I  Y   G +  A+G+ K+M   GC P+  TY  L       GCF      E
Sbjct: 257 DIAGYNSLIEAYADAGNVHGAAGVFKQMQRGGCAPDVETYSTLLRIYGNQGCF------E 310

Query: 358 GFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTF 417
             ++L   MK ++T       P + T  S+I++F E G    + NLF ++  +       
Sbjct: 311 QVRSLFSDMKELSTP------PTVATYNSLIQVFGEGGYFQESINLFHDMVDSGVKPDDA 364

Query: 418 VYNTLI 423
            Y+ L+
Sbjct: 365 TYSALL 370



 Score = 59.3 bits (142), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 63/317 (19%), Positives = 127/317 (40%), Gaps = 12/317 (3%)

Query: 96  LLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQ 155
           + YN L+ AC  +G+++ +    K M   G     + +  L+   +   +   +  +LR+
Sbjct: 189 ITYNTLLSACSSRGLVEQAAMVFKTMNESGVVADAVTYKSLVDTFAGSNQLGRVEELLRE 248

Query: 156 MKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARL 215
           M+ +  +P ++ ++ L++  A+  N+ G   V+  M+R    P+  +Y  L   +     
Sbjct: 249 MEDEGNSPDIAGYNSLIEAYADAGNVHGAAGVFKQMQRGGCAPDVETYSTLLRIYGNQGC 308

Query: 216 YTVAETYVEALEKSMTGNNWSTLDVLIILY---GYLAKGKDLERIWATVQELPNVRSKSY 272
           +    +    +++  T    +T + LI ++   GY  +  +L          P+  + S 
Sbjct: 309 FEQVRSLFSDMKELSTPPTVATYNSLIQVFGEGGYFQESINLFHDMVDSGVKPDDATYSA 368

Query: 273 VLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSM 332
           +L++   GR      A ++   M + +   + E    +IS Y K      A      +  
Sbjct: 369 LLSV--CGRGGLTREAAKIHQHMLTNESTPSLEASAGLISSYGKMAMYKDALVSYYRIRE 426

Query: 333 NGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFA 392
            G  P    Y  L  G  K  L       +E G  L    K     P + +  S++E ++
Sbjct: 427 AGLDPQVSAYDALIQGYAKGGLY------VEAGSTLYAMNKAGFQAP-VSSVNSVMEAYS 479

Query: 393 EKGDVGNAENLFEELKK 409
           + G    A   F EL++
Sbjct: 480 KVGLHDEALEFFSELQQ 496



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 56/215 (26%), Positives = 86/215 (40%), Gaps = 31/215 (14%)

Query: 272 YVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMS 331
           Y + I   GR   + +  E++ +M           + ++I+ Y +NG  + +  LL  M 
Sbjct: 85  YTIMIGIMGREGLLEKCSEIFEDMPENDVKWNVYAFTALINAYGRNGQYEASLHLLARMK 144

Query: 332 MNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMK-------LITTKKVR---SSTPWL 381
               +PN ITY  +   C K  L  EG   L   M+       LIT   +    SS   +
Sbjct: 145 KERVEPNLITYNTVLNACSKGGLDWEGLLNLFAQMRHEGIQPDLITYNTLLSACSSRGLV 204

Query: 382 E-------------------TTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTL 422
           E                   T  S+++ FA    +G  E L  E++    +     YN+L
Sbjct: 205 EQAAMVFKTMNESGVVADAVTYKSLVDTFAGSNQLGRVEELLREMEDEGNSPDIAGYNSL 264

Query: 423 IKAYVKAK--INDPNLLRRMILGGARPDAETYSLL 455
           I+AY  A        + ++M  GG  PD ETYS L
Sbjct: 265 IEAYADAGNVHGAAGVFKQMQRGGCAPDVETYSTL 299


>gi|125559009|gb|EAZ04545.1| hypothetical protein OsI_26694 [Oryza sativa Indica Group]
          Length = 784

 Score = 72.4 bits (176), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 75/352 (21%), Positives = 142/352 (40%), Gaps = 65/352 (18%)

Query: 133 FNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDH-NIEGLMKVYSDM 191
           +  L+   S  GR +    + R+M    V P + T+++++ + +      + ++++ + M
Sbjct: 175 YTALVSAFSRAGRFRDAVAVFRRMVDSGVQPAIVTYNVVLHVYSKMAVPWKEVVELVASM 234

Query: 192 KRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKG 251
           K   V P+  +Y  L +      LY  A    + ++ S    +  T + L+ +YG     
Sbjct: 235 KEHGVAPDRYTYNTLISCCRRRALYKEAAQVFDEMKASGFEPDKVTFNSLLDVYG----- 289

Query: 252 KDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVI 311
                           +++ +  AIE                EM+ V    +   YNS+I
Sbjct: 290 ----------------KARRHDEAIEVIQ-------------EMERVGCPPSVVTYNSLI 320

Query: 312 SVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGF----KALELGMK 367
           S Y K+G +++A  L +EM + G KP+ +TY  L  G  ++  ++       + +  G K
Sbjct: 321 SSYVKDGLLEQAVALKQEMEVKGIKPDVVTYTTLISGLDRAGKIDAAIVEYDEMVRNGCK 380

Query: 368 --------LITTKKVRSSTPWLETTL----------------SIIEIFAEKGDVGNAENL 403
                   LI    VR   P +                    +++ +F + G       +
Sbjct: 381 PNLCTYNALIKMHGVRGKFPEMMAVFDELRSAGFVPDIVTWNTLLAVFGQNGLDSEVSGV 440

Query: 404 FEELKKANYTKYTFVYNTLIKAYVKAKIND--PNLLRRMILGGARPDAETYS 453
           F+E+KKA Y      Y +LI +Y +  + D    + +RM+  G  PD  TY+
Sbjct: 441 FKEMKKAGYIPERDTYVSLISSYSRCGLFDLAMQIYKRMMEAGIYPDVSTYN 492



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 76/359 (21%), Positives = 143/359 (39%), Gaps = 54/359 (15%)

Query: 72  TIKNHGISQGEKLFCCIPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYL 131
           ++K HG++         P  Y     YN L+  C  + + K + +   +M+  G     +
Sbjct: 233 SMKEHGVA---------PDRYT----YNTLISCCRRRALYKEAAQVFDEMKASGFEPDKV 279

Query: 132 VFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDM 191
            FN L+ +     R      ++++M+     P V T++ L+     D  +E  + +  +M
Sbjct: 280 TFNSLLDVYGKARRHDEAIEVIQEMERVGCPPSVVTYNSLISSYVKDGLLEQAVALKQEM 339

Query: 192 KRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKG 251
           +   ++P+ V+Y  L +    A     A    + + ++    N  T + LI ++G   +G
Sbjct: 340 EVKGIKPDVVTYTTLISGLDRAGKIDAAIVEYDEMVRNGCKPNLCTYNALIKMHG--VRG 397

Query: 252 KDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVI 311
           K    + A   EL   RS  +V  I                              +N+++
Sbjct: 398 K-FPEMMAVFDEL---RSAGFVPDIVT----------------------------WNTLL 425

Query: 312 SVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITT 371
           +V+ +NG   + SG+ KEM   G  P   TY  L     +  L        +L M++   
Sbjct: 426 AVFGQNGLDSEVSGVFKEMKKAGYIPERDTYVSLISSYSRCGL-------FDLAMQIYKR 478

Query: 372 KKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAK 430
                  P + T  +++   A  G    AE LF E+++ +     + Y++L+ AY  AK
Sbjct: 479 MMEAGIYPDVSTYNAVLSALARGGRWEQAEKLFAEMEERDCKPDEYSYSSLLHAYANAK 537



 Score = 67.4 bits (163), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 65/314 (20%), Positives = 139/314 (44%), Gaps = 10/314 (3%)

Query: 98  YNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMK 157
           Y +L+ +    G+  L+++  K+M   G       +N ++   +  GR +    +  +M+
Sbjct: 456 YVSLISSYSRCGLFDLAMQIYKRMMEAGIYPDVSTYNAVLSALARGGRWEQAEKLFAEME 515

Query: 158 ADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEP-NEVSYCILATAHAVARLY 216
                P   ++  L+   AN   ++ +  +  D+    +EP N +   ++     V  L 
Sbjct: 516 ERDCKPDEYSYSSLLHAYANAKRLDKMKALSDDIYSERIEPHNWLVKTLVLVNSKVNNLA 575

Query: 217 TVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELP-NVRSKSYVLA 275
              + ++E L +     + + L+ ++ +YG     + +E+I + ++E   N+ + +Y   
Sbjct: 576 EAEKAFLE-LRQKRCSLDINVLNAMVSIYGKNRMVRKVEKILSLMKESAINLSAATYNSL 634

Query: 276 IEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGC 335
           +  + R+    + E +  E++S         YN+VI  Y + G + +AS L  EM  +G 
Sbjct: 635 MHMYSRLGDCEKCENILTEIKSSGVRPDRYSYNTVIYAYGRKGQMKEASRLFSEMKCSGL 694

Query: 336 KPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKG 395
           KP+ +TY         +++ EE   A+EL   ++T    +   P   T  SI+E +   G
Sbjct: 695 KPDVVTYNIFVKSYVSNSMFEE---AIELVRYMVT----QGCKPNERTYNSIVEGYCRNG 747

Query: 396 DVGNAENLFEELKK 409
            + +A+     L +
Sbjct: 748 KLTDAKIFVSNLPQ 761



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 78/374 (20%), Positives = 156/374 (41%), Gaps = 22/374 (5%)

Query: 87  CIPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRR 146
           C P    N   YN L+     +G     +    ++R  G     + +N L+ +    G  
Sbjct: 379 CKP----NLCTYNALIKMHGVRGKFPEMMAVFDELRSAGFVPDIVTWNTLLAVFGQNGLD 434

Query: 147 KTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCIL 206
             +  + ++MK     P   T+  L+   +     +  M++Y  M  + + P+  +Y  +
Sbjct: 435 SEVSGVFKEMKKAGYIPERDTYVSLISSYSRCGLFDLAMQIYKRMMEAGIYPDVSTYNAV 494

Query: 207 ATAHAVARLYTVAET-YVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELP 265
            +A A    +  AE  + E  E+    + +S      +L+ Y A  K L+++ A   ++ 
Sbjct: 495 LSALARGGRWEQAEKLFAEMEERDCKPDEYSYSS---LLHAY-ANAKRLDKMKALSDDIY 550

Query: 266 NVRSKSYVLAIEAF----GRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFID 321
           + R + +   ++       ++  ++ AE+ +LE++  +        N+++S+Y KN  + 
Sbjct: 551 SERIEPHNWLVKTLVLVNSKVNNLAEAEKAFLELRQKRCSLDINVLNAMVSIYGKNRMVR 610

Query: 322 KASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWL 381
           K   +L  M  +    +A TY  L      S L +      E    ++T  K     P  
Sbjct: 611 KVEKILSLMKESAINLSAATYNSLMH--MYSRLGD-----CEKCENILTEIKSSGVRPDR 663

Query: 382 ETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKINDP--NLLRR 439
            +  ++I  +  KG +  A  LF E+K +        YN  +K+YV   + +    L+R 
Sbjct: 664 YSYNTVIYAYGRKGQMKEASRLFSEMKCSGLKPDVVTYNIFVKSYVSNSMFEEAIELVRY 723

Query: 440 MILGGARPDAETYS 453
           M+  G +P+  TY+
Sbjct: 724 MVTQGCKPNERTYN 737



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 97/464 (20%), Positives = 193/464 (41%), Gaps = 50/464 (10%)

Query: 33  INRLRKLQLNKRALEVMEWVIRERPYRPKELDYSYLLEF--TIKNHG-----ISQGEKLF 85
           I+  R+  L K A +V +  ++   + P ++ ++ LL+     + H      I + E++ 
Sbjct: 250 ISCCRRRALYKEAAQVFDE-MKASGFEPDKVTFNSLLDVYGKARRHDEAIEVIQEMERVG 308

Query: 86  CCIPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGR 145
           C       + + YN+L+ + +  G+++ ++   ++M V G     + +  LI      G+
Sbjct: 309 CP-----PSVVTYNSLISSYVKDGLLEQAVALKQEMEVKGIKPDVVTYTTLISGLDRAGK 363

Query: 146 RKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCI 205
                    +M  +   P++ T++ L+K+         +M V+ +++ +   P+ V++  
Sbjct: 364 IDAAIVEYDEMVRNGCKPNLCTYNALIKMHGVRGKFPEMMAVFDELRSAGFVPDIVTWNT 423

Query: 206 LATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQEL- 264
           L        L +      + ++K+       T   LI  Y          +I+  + E  
Sbjct: 424 LLAVFGQNGLDSEVSGVFKEMKKAGYIPERDTYVSLISSYSRCGLFDLAMQIYKRMMEAG 483

Query: 265 --PNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATE-QYNSVISVYCKNGFID 321
             P+V + + VL+  A  R  +  +AE+L+ EM+  +  K  E  Y+S++  Y     +D
Sbjct: 484 IYPDVSTYNAVLS--ALARGGRWEQAEKLFAEMEE-RDCKPDEYSYSSLLHAYANAKRLD 540

Query: 322 KASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKA-LELGMKLIT---------- 370
           K   L  ++     +P+    + L L   K N + E  KA LEL  K  +          
Sbjct: 541 KMKALSDDIYSERIEPHNWLVKTLVLVNSKVNNLAEAEKAFLELRQKRCSLDINVLNAMV 600

Query: 371 -----TKKVRSSTPWLE------------TTLSIIEIFAEKGDVGNAENLFEELKKANYT 413
                 + VR     L             T  S++ +++  GD    EN+  E+K +   
Sbjct: 601 SIYGKNRMVRKVEKILSLMKESAINLSAATYNSLMHMYSRLGDCEKCENILTEIKSSGVR 660

Query: 414 KYTFVYNTLIKAY-VKAKINDPN-LLRRMILGGARPDAETYSLL 455
              + YNT+I AY  K ++ + + L   M   G +PD  TY++ 
Sbjct: 661 PDRYSYNTVIYAYGRKGQMKEASRLFSEMKCSGLKPDVVTYNIF 704



 Score = 51.6 bits (122), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 48/211 (22%), Positives = 85/211 (40%), Gaps = 10/211 (4%)

Query: 248 LAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQY 307
           +A+   L    A +   P   + +Y   + AF R  +   A  ++  M       A   Y
Sbjct: 151 MARAGRLAEASALLDAAPGPDAGAYTALVSAFSRAGRFRDAVAVFRRMVDSGVQPAIVTY 210

Query: 308 NSVISVYCKNGFI-DKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGM 366
           N V+ VY K      +   L+  M  +G  P+  TY  L   C +  L +E  +  +   
Sbjct: 211 NVVLHVYSKMAVPWKEVVELVASMKEHGVAPDRYTYNTLISCCRRRALYKEAAQVFD--- 267

Query: 367 KLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAY 426
                 K     P   T  S+++++ +      A  + +E+++         YN+LI +Y
Sbjct: 268 ----EMKASGFEPDKVTFNSLLDVYGKARRHDEAIEVIQEMERVGCPPSVVTYNSLISSY 323

Query: 427 VKAKINDP--NLLRRMILGGARPDAETYSLL 455
           VK  + +    L + M + G +PD  TY+ L
Sbjct: 324 VKDGLLEQAVALKQEMEVKGIKPDVVTYTTL 354


>gi|147768816|emb|CAN62673.1| hypothetical protein VITISV_031897 [Vitis vinifera]
          Length = 653

 Score = 72.4 bits (176), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 89/396 (22%), Positives = 148/396 (37%), Gaps = 45/396 (11%)

Query: 98  YNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMK 157
           +  L+     +G I  +L    KM   G   + + +  LI      G       +LR M+
Sbjct: 143 FTTLIRGLCVEGKIGEALHLFDKMIGEGFQPNVVTYGTLINGLCKVGNTSAAIRLLRSME 202

Query: 158 ADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSY-------CILATAH 210
                P+V  F  L+     D  +     ++S+M    + PN V+Y       C L    
Sbjct: 203 QGNCQPNVVVFSTLIDSLCKDRQVTEAFNIFSEMITKGISPNIVTYNSLIHGLCKLCEWK 262

Query: 211 AVARLYT------------VAETYVEALEK-SMTGNNWSTLDVLI--------ILYGYLA 249
            V  L                 T V+AL K  M       +D++I        + Y  L 
Sbjct: 263 HVTTLMNEMVDSKIMPDVFTLNTVVDALCKEGMVAEAHDVVDMMIHRGVEPNVVTYNALM 322

Query: 250 KGKDLE-------RIWATVQELPNVRSK-SYVLAIEAFGRIAQVSRAEELWLEMQSVKQL 301
            G  L        +++ T+     V +  SY   I  + +I  V +A  L+ EM   +  
Sbjct: 323 DGHCLRNEVDVAVKVFDTMVHKDCVANVISYNTLINGYCKIQSVDKAMYLFEEMSRQELT 382

Query: 302 KATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKA 361
             T  YN++I   C  G +  A  L  EM   G  P+ +TYR L+    K+       + 
Sbjct: 383 PNTVTYNTLIHGLCHVGRLQDAISLFHEMVARGQIPDLVTYRTLSDYLCKN-------RH 435

Query: 362 LELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNT 421
           L+  M L+   +  +  P ++   +I++     G++ +A +LF  L         + YN 
Sbjct: 436 LDKAMALLKAIEGSNWDPDIQIYTTILDGMCRAGELEDARDLFSNLSSKGLQPNVWTYNI 495

Query: 422 LIKAYVKAKI--NDPNLLRRMILGGARPDAETYSLL 455
           +I    K  +      L   M   G  P+  TY+L+
Sbjct: 496 MIHGLCKQGLLAEASKLFSEMNKNGCSPNDCTYNLI 531



 Score = 69.3 bits (168), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 97/438 (22%), Positives = 167/438 (38%), Gaps = 64/438 (14%)

Query: 30  FHSINRLRKLQLN--KRALEVMEWVIRERPYRPKELDYSYLLEFT--IKNHG----ISQG 81
           FHS    + L  N    AL     ++ ++P  P  +D++ LL      K+H     +S+ 
Sbjct: 41  FHS----KPLHFNTLDEALSTFNRMLHKQP-PPSTVDFNRLLTSIAKTKHHSTLLSLSRQ 95

Query: 82  EKLFCCIPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNS 141
              F   P  Y   ++ N+L    L++  +  +   + K+  LGH      F  LI    
Sbjct: 96  MDSFGIPPDVYTLAIVINSL--CHLNR--VDFAFSALAKILKLGHQPDATTFTTLIRGLC 151

Query: 142 SPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEV 201
             G+     ++  +M  +   P+V T+  L+       N    +++   M++   +PN V
Sbjct: 152 VEGKIGEALHLFDKMIGEGFQPNVVTYGTLINGLCKVGNTSAAIRLLRSMEQGNCQPNVV 211

Query: 202 SYCILATAHAVARLYTVA-ETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWAT 260
            +  L  +    R  T A   + E + K ++ N        I+ Y  L  G      W  
Sbjct: 212 VFSTLIDSLCKDRQVTEAFNIFSEMITKGISPN--------IVTYNSLIHGLCKLCEWKH 263

Query: 261 VQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFI 320
           V  L N                           EM   K +      N+V+   CK G +
Sbjct: 264 VTTLMN---------------------------EMVDSKIMPDVFTLNTVVDALCKEGMV 296

Query: 321 DKASGLLKEMSMNGCKPNAITYRHLALG-CFKSNLVEEGFKALELGMKLITTKKVRSSTP 379
            +A  ++  M   G +PN +TY  L  G C ++         +++ +K+  T   +    
Sbjct: 297 AEAHDVVDMMIHRGVEPNVVTYNALMDGHCLRNE--------VDVAVKVFDTMVHKDCVA 348

Query: 380 WLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVK-AKINDP-NLL 437
            + +  ++I  + +   V  A  LFEE+ +   T  T  YNTLI       ++ D  +L 
Sbjct: 349 NVISYNTLINGYCKIQSVDKAMYLFEEMSRQELTPNTVTYNTLIHGLCHVGRLQDAISLF 408

Query: 438 RRMILGGARPDAETYSLL 455
             M+  G  PD  TY  L
Sbjct: 409 HEMVARGQIPDLVTYRTL 426



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 64/304 (21%), Positives = 129/304 (42%), Gaps = 20/304 (6%)

Query: 99  NNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKA 158
           N +V A   +G++  + + +  M   G   + + +N L+  +           +   M  
Sbjct: 284 NTVVDALCKEGMVAEAHDVVDMMIHRGVEPNVVTYNALMDGHCLRNEVDVAVKVFDTMVH 343

Query: 159 DKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHA-VARLYT 217
                +V +++ L+       +++  M ++ +M R E+ PN V+Y  L      V RL  
Sbjct: 344 KDCVANVISYNTLINGYCKIQSVDKAMYLFEEMSRQELTPNTVTYNTLIHGLCHVGRLQD 403

Query: 218 VAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQEL------PNVRSKS 271
               + E + +    +    L     L  YL K + L++  A ++ +      P++  + 
Sbjct: 404 AISLFHEMVARGQIPD----LVTYRTLSDYLCKNRHLDKAMALLKAIEGSNWDPDI--QI 457

Query: 272 YVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMS 331
           Y   ++   R  ++  A +L+  + S         YN +I   CK G + +AS L  EM+
Sbjct: 458 YTTILDGMCRAGELEDARDLFSNLSSKGLQPNVWTYNIMIHGLCKQGLLAEASKLFSEMN 517

Query: 332 MNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIF 391
            NGC PN  TY  +  G  ++N   E  + +EL  +++     R  +  + TT  ++ + 
Sbjct: 518 KNGCSPNDCTYNLITRGFLRNN---EALRTIELLEEML----ARGFSVDVSTTTLLVGML 570

Query: 392 AEKG 395
           ++ G
Sbjct: 571 SDDG 574



 Score = 64.7 bits (156), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 91/426 (21%), Positives = 170/426 (39%), Gaps = 33/426 (7%)

Query: 45  ALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQGEKLF------CCIPKDYQNELLY 98
           AL + + +I E  ++P  + Y  L+    K    S   +L        C P    N +++
Sbjct: 159 ALHLFDKMIGEG-FQPNVVTYGTLINGLCKVGNTSAAIRLLRSMEQGNCQP----NVVVF 213

Query: 99  NNLVIA-CLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMK 157
           + L+ + C D+ V + +     +M   G S + + +N LI         K +  ++ +M 
Sbjct: 214 STLIDSLCKDRQVTE-AFNIFSEMITKGISPNIVTYNSLIHGLCKLCEWKHVTTLMNEMV 272

Query: 158 ADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYT 217
             K+ P V T + ++     +  +     V   M    VEPN V+Y  L   H +     
Sbjct: 273 DSKIMPDVFTLNTVVDALCKEGMVAEAHDVVDMMIHRGVEPNVVTYNALMDGHCLRNEVD 332

Query: 218 VAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQEL------PNVRSKS 271
           VA    + +       N  + + LI   GY  K + +++     +E+      PN  + +
Sbjct: 333 VAVKVFDTMVHKDCVANVISYNTLI--NGY-CKIQSVDKAMYLFEEMSRQELTPN--TVT 387

Query: 272 YVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMS 331
           Y   I     + ++  A  L+ EM +  Q+     Y ++    CKN  +DKA  LLK + 
Sbjct: 388 YNTLIHGLCHVGRLQDAISLFHEMVARGQIPDLVTYRTLSDYLCKNRHLDKAMALLKAIE 447

Query: 332 MNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIF 391
            +   P+   Y  +  G  ++  +E+          L +    +   P + T   +I   
Sbjct: 448 GSNWDPDIQIYTTILDGMCRAGELEDA-------RDLFSNLSSKGLQPNVWTYNIMIHGL 500

Query: 392 AEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAK--INDPNLLRRMILGGARPDA 449
            ++G +  A  LF E+ K   +     YN + + +++    +    LL  M+  G   D 
Sbjct: 501 CKQGLLAEASKLFSEMNKNGCSPNDCTYNLITRGFLRNNEALRTIELLEEMLARGFSVDV 560

Query: 450 ETYSLL 455
            T +LL
Sbjct: 561 STTTLL 566


>gi|255661150|gb|ACU25744.1| pentatricopeptide repeat-containing protein [Verbena montevidensis]
 gi|255661152|gb|ACU25745.1| pentatricopeptide repeat-containing protein [Verbena litoralis]
          Length = 426

 Score = 72.4 bits (176), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 74/322 (22%), Positives = 149/322 (46%), Gaps = 22/322 (6%)

Query: 98  YNNLVIACLDKGVIKLSLEYMKKM---RVLGHSISYLVFNRLIILNSSPGRRKTIPNILR 154
           Y+ L+     +G+   +L +++KM   RV G  + Y   + LI L+          +I  
Sbjct: 12  YSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLY---SNLIELSRKLCDYSKAISIFS 68

Query: 155 QMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVAR 214
           ++K     P +  ++ ++ +            + S+MK + V P+  SY  L T +   +
Sbjct: 69  RLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMKTAGVTPDTASYSTLLTMYVENK 128

Query: 215 LYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQEL---PNVRSKS 271
            +  A +    + +     + +T +++I +YG L   K+ ++++  ++++   PNV S +
Sbjct: 129 KFLEALSIFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYN 188

Query: 272 YVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMS 331
            +L +  +G       A  L+  MQ     +    YNS++ +Y K    +KA+ L++EM 
Sbjct: 189 TLLRV--YGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQ 246

Query: 332 MNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTL--SIIE 389
             G +PN+ITY         S ++    K  +L    +  +K+RSS   ++  L  ++I 
Sbjct: 247 NRGIEPNSITY---------STIISIWGKVGKLDRAAMLFQKLRSSGVDIDQVLYQTMIV 297

Query: 390 IFAEKGDVGNAENLFEELKKAN 411
            +   G V +A+ L  ELK+ +
Sbjct: 298 AYERAGLVAHAKRLLHELKRPD 319



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 76/370 (20%), Positives = 161/370 (43%), Gaps = 20/370 (5%)

Query: 65  YSYLLEFTIKNHGISQGEKLFCCIPKD-YQNELLYNNLVIACLDKG-VIKLSLEYMKKMR 122
           YS L+E + K    S+   +F  + +  +  +L+  N +I    K  + + +   + +M+
Sbjct: 47  YSNLIELSRKLCDYSKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMK 106

Query: 123 VLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIE 182
             G +     ++ L+ +     +     +I  +M+  K    ++T +I++ +       +
Sbjct: 107 TAGVTPDTASYSTLLTMYVENKKFLEALSIFAEMREIKCLLDLTTCNIMIDVYGQLGMAK 166

Query: 183 GLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLI 242
              K++  M++  +EPN VSY  L   +  A L+  A      +++     N  T + ++
Sbjct: 167 EADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMM 226

Query: 243 ILYGYLAKGKDLERIWATVQELPN----VRSKSYVLAIEAFGRIAQVSRAEELWLEMQSV 298
           ++YG   K  + E+    +QE+ N      S +Y   I  +G++ ++ RA  L+ +++S 
Sbjct: 227 MIYG---KTLEHEKANNLIQEMQNRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSS 283

Query: 299 KQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEG 358
                   Y ++I  Y + G +  A  LL E+      P  I    LA     +  +EE 
Sbjct: 284 GVDIDQVLYQTMIVAYERAGLVAHAKRLLHELKRPDNIPRDIAIHILA----GAGRIEE- 338

Query: 359 FKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFV 418
             A  +  + I   +V+  T +      +I +F++    GN   +F++++   Y   + V
Sbjct: 339 --ATWVFRQAIDAGEVKDITVFER----MIHLFSKYKKYGNVVEVFDKMRGLGYFPDSNV 392

Query: 419 YNTLIKAYVK 428
              ++ AY K
Sbjct: 393 IALVLNAYGK 402



 Score = 40.8 bits (94), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 33/126 (26%), Positives = 58/126 (46%), Gaps = 11/126 (8%)

Query: 307 YNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGM 366
           Y+++I+ + K G  D A   L++M  +    + + Y         SNL+E   K  +   
Sbjct: 12  YSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLY---------SNLIELSRKLCDYSK 62

Query: 367 KLITTKKVRSS--TPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIK 424
            +    +++ S  TP L    ++I +F +      A +L  E+K A  T  T  Y+TL+ 
Sbjct: 63  AISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMKTAGVTPDTASYSTLLT 122

Query: 425 AYVKAK 430
            YV+ K
Sbjct: 123 MYVENK 128



 Score = 40.0 bits (92), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 32/125 (25%), Positives = 60/125 (48%), Gaps = 7/125 (5%)

Query: 307 YNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGM 366
           YN++I+V+ K     +A  L+ EM   G  P+  +Y  L L  +  N  ++  +AL +  
Sbjct: 82  YNAMINVFGKAKLFREARSLISEMKTAGVTPDTASYSTL-LTMYVEN--KKFLEALSIFA 138

Query: 367 KLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAY 426
           ++   K +      L T   +I+++ + G    A+ LF  ++K         YNTL++ Y
Sbjct: 139 EMREIKCLLD----LTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVY 194

Query: 427 VKAKI 431
             A++
Sbjct: 195 GDAEL 199


>gi|359474464|ref|XP_003631475.1| PREDICTED: pentatricopeptide repeat-containing protein At1g05670,
           mitochondrial-like [Vitis vinifera]
 gi|297742067|emb|CBI33854.3| unnamed protein product [Vitis vinifera]
          Length = 767

 Score = 72.4 bits (176), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 76/353 (21%), Positives = 151/353 (42%), Gaps = 20/353 (5%)

Query: 109 GVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTF 168
           G ++ +L++++ +      ++   +N +I      G       +L +MK+  ++P V T+
Sbjct: 304 GYVESALDFVRSLISANGLVNVYCYNAIIHGLCKKGELDEALKVLEEMKSCGISPDVYTY 363

Query: 169 HILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEK 228
            IL+       ++E  + +  +MK S +EP+ VSY  L       RL  ++      L  
Sbjct: 364 SILIHGFCKQGDVEKGLYLIEEMKYSNMEPSLVSYSSLFHGLCKKRLSDISLDIFRDLGA 423

Query: 229 SMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRS------KSYVLAIEAFGRI 282
           +  G  +      I++ G+  +G DL+     ++E+  VR+       ++   +  F ++
Sbjct: 424 A--GYKYDQTAYSILIKGFCMQG-DLDSAHKLMEEM--VRNNLAPDPSNFESLVHGFCKM 478

Query: 283 AQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITY 342
                A E +  M     L +    N +I  +C+ G +++A  L+ EM   G  PN  TY
Sbjct: 479 GLWVNALEFFNMMLEGGILPSIATCNVIIDAHCREGRVEEALNLMNEMQTQGIFPNLFTY 538

Query: 343 RHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAEN 402
             +     K    E   +   L +K       R+  P +    ++I+ FA++ +   A  
Sbjct: 539 NAVINRLCKERKSERALELFPLMLK-------RNVLPSVVVYSTLIDGFAKQSNSQKALM 591

Query: 403 LFEELKKANYTKYTFVYNTLIKAYV-KAKINDP-NLLRRMILGGARPDAETYS 453
           L+  + K   T     Y  LI     ++++ +  NL ++M   G  PD  +Y+
Sbjct: 592 LYARMLKIGVTPDMVAYTILINILCHRSRMCEAYNLFKKMTENGMTPDKISYT 644



 Score = 63.9 bits (154), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 75/340 (22%), Positives = 140/340 (41%), Gaps = 24/340 (7%)

Query: 129 SYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVY 188
           S +VF+ LI + ++    +   ++  Q K   +     + + L+K  A  +  E L  ++
Sbjct: 178 SVIVFDLLIKVFAANSMLENAVDVFLQAKKTGLELSTRSCNFLLKCLAEANRREFLRSLF 237

Query: 189 SDMKRSEVEPNEVSYCILATAHAVARLYTV------AETYVEALEK---SMTGNNWSTLD 239
            +MK +   PN  +Y I+   +              A   +E +E+   S T   +ST  
Sbjct: 238 EEMKSTGPPPNVFTYTIMMNFYCKGNFGEADIDTRQATEILEEMERNGESPTVVTYSTYI 297

Query: 240 VLIILYGYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVK 299
             +   GY+    D  R   +   L NV    Y   I    +  ++  A ++  EM+S  
Sbjct: 298 YGLCRVGYVESALDFVRSLISANGLVNVY--CYNAIIHGLCKKGELDEALKVLEEMKSCG 355

Query: 300 QLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGF 359
                  Y+ +I  +CK G ++K   L++EM  +  +P+ ++Y  L  G  K  L +   
Sbjct: 356 ISPDVYTYSILIHGFCKQGDVEKGLYLIEEMKYSNMEPSLVSYSSLFHGLCKKRLSDISL 415

Query: 360 KAL-ELGMKLITTKKVRSSTPWLETTLSI-IEIFAEKGDVGNAENLFEELKKANYTKYTF 417
               +LG          +   + +T  SI I+ F  +GD+ +A  L EE+ + N      
Sbjct: 416 DIFRDLGA---------AGYKYDQTAYSILIKGFCMQGDLDSAHKLMEEMVRNNLAPDPS 466

Query: 418 VYNTLIKAYVKAK--INDPNLLRRMILGGARPDAETYSLL 455
            + +L+  + K    +N       M+ GG  P   T +++
Sbjct: 467 NFESLVHGFCKMGLWVNALEFFNMMLEGGILPSIATCNVI 506



 Score = 59.7 bits (143), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 66/259 (25%), Positives = 116/259 (44%), Gaps = 23/259 (8%)

Query: 99  NNLVIACLDKGVIKLSLEYMKKMRVLG---HSISY-LVFNRLIILNSSPGRRKTIPNILR 154
           N ++ A   +G ++ +L  M +M+  G   +  +Y  V NRL     S    +  P +L+
Sbjct: 504 NVIIDAHCREGRVEEALNLMNEMQTQGIFPNLFTYNAVINRLCKERKSERALELFPLMLK 563

Query: 155 QMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILAT--AHAV 212
           +     V P V  +  L+   A   N +  + +Y+ M +  V P+ V+Y IL     H  
Sbjct: 564 R----NVLPSVVVYSTLIDGFAKQSNSQKALMLYARMLKIGVTPDMVAYTILINILCHR- 618

Query: 213 ARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQE------LPN 266
           +R+      + +  E  MT +  S   V+    G+   G D+ + WA   E      LP 
Sbjct: 619 SRMCEAYNLFKKMTENGMTPDKISYTSVIA---GFCRIG-DMRKAWALFNEMLQRGHLPT 674

Query: 267 VRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGL 326
           V   +Y   ++ + ++ ++  A+ L  EM+          YN +I+ + + G +DKA  +
Sbjct: 675 V--VTYTSLVDGYCKMNRIDIADMLIDEMKRKGITPDVVTYNVLIAAHRRRGNLDKALEM 732

Query: 327 LKEMSMNGCKPNAITYRHL 345
           L EM  NG  P+ +TY  L
Sbjct: 733 LNEMKENGVLPDHMTYMML 751



 Score = 58.9 bits (141), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 74/305 (24%), Positives = 124/305 (40%), Gaps = 20/305 (6%)

Query: 162 APHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAET 221
           A  V  F +L+K+ A +  +E  + V+   K++ +E +  S   L    A A       +
Sbjct: 176 ARSVIVFDLLIKVFAANSMLENAVDVFLQAKKTGLELSTRSCNFLLKCLAEANRREFLRS 235

Query: 222 YVEALEKSMTGNNWSTLDVLIILYGYLAKGK-DLERIWAT--VQEL------PNVRSKSY 272
             E ++ +    N  T  +++  Y     G+ D++   AT  ++E+      P V   +Y
Sbjct: 236 LFEEMKSTGPPPNVFTYTIMMNFYCKGNFGEADIDTRQATEILEEMERNGESPTV--VTY 293

Query: 273 VLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSM 332
              I    R+  V  A +    + S   L     YN++I   CK G +D+A  +L+EM  
Sbjct: 294 STYIYGLCRVGYVESALDFVRSLISANGLVNVYCYNAIIHGLCKKGELDEALKVLEEMKS 353

Query: 333 NGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFA 392
            G  P+  TY  L  G  K   VE+       G+ LI   K  +  P L +  S+     
Sbjct: 354 CGISPDVYTYSILIHGFCKQGDVEK-------GLYLIEEMKYSNMEPSLVSYSSLFHGLC 406

Query: 393 EKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKINDP--NLLRRMILGGARPDAE 450
           +K     + ++F +L  A Y      Y+ LIK +      D    L+  M+     PD  
Sbjct: 407 KKRLSDISLDIFRDLGAAGYKYDQTAYSILIKGFCMQGDLDSAHKLMEEMVRNNLAPDPS 466

Query: 451 TYSLL 455
            +  L
Sbjct: 467 NFESL 471



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 54/233 (23%), Positives = 96/233 (41%), Gaps = 1/233 (0%)

Query: 114 SLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMK 173
           +LE+   M   G   S    N +I  +   GR +   N++ +M+   + P++ T++ ++ 
Sbjct: 484 ALEFFNMMLEGGILPSIATCNVIIDAHCREGRVEEALNLMNEMQTQGIFPNLFTYNAVIN 543

Query: 174 IEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGN 233
               +   E  ++++  M +  V P+ V Y  L    A       A      + K     
Sbjct: 544 RLCKERKSERALELFPLMLKRNVLPSVVVYSTLIDGFAKQSNSQKALMLYARMLKIGVTP 603

Query: 234 NWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSK-SYVLAIEAFGRIAQVSRAEELW 292
           +     +LI +  + ++  +   ++  + E      K SY   I  F RI  + +A  L+
Sbjct: 604 DMVAYTILINILCHRSRMCEAYNLFKKMTENGMTPDKISYTSVIAGFCRIGDMRKAWALF 663

Query: 293 LEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHL 345
            EM     L     Y S++  YCK   ID A  L+ EM   G  P+ +TY  L
Sbjct: 664 NEMLQRGHLPTVVTYTSLVDGYCKMNRIDIADMLIDEMKRKGITPDVVTYNVL 716



 Score = 55.5 bits (132), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 89/424 (20%), Positives = 169/424 (39%), Gaps = 27/424 (6%)

Query: 45  ALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQGEKLFCCIPKDYQNE----LLYNN 100
           AL+V+E  ++     P    YS L+    K   + +G  L+      Y N     + Y++
Sbjct: 344 ALKVLEE-MKSCGISPDVYTYSILIHGFCKQGDVEKG--LYLIEEMKYSNMEPSLVSYSS 400

Query: 101 LVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADK 160
           L      K +  +SL+  + +   G+      ++ LI      G   +   ++ +M  + 
Sbjct: 401 LFHGLCKKRLSDISLDIFRDLGAAGYKYDQTAYSILIKGFCMQGDLDSAHKLMEEMVRNN 460

Query: 161 VAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAE 220
           +AP  S F  L+            ++ ++ M    + P+  +  ++  AH        A 
Sbjct: 461 LAPDPSNFESLVHGFCKMGLWVNALEFFNMMLEGGILPSIATCNVIIDAHCREGRVEEAL 520

Query: 221 TYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLER------IWATVQELPNVRSKSYVL 274
             +  ++      N  T + +I     L K +  ER      +      LP+V    Y  
Sbjct: 521 NLMNEMQTQGIFPNLFTYNAVI---NRLCKERKSERALELFPLMLKRNVLPSV--VVYST 575

Query: 275 AIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNG 334
            I+ F + +   +A  L+  M  +        Y  +I++ C    + +A  L K+M+ NG
Sbjct: 576 LIDGFAKQSNSQKALMLYARMLKIGVTPDMVAYTILINILCHRSRMCEAYNLFKKMTENG 635

Query: 335 CKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEK 394
             P+ I+Y  +  G  +   + +  KA  L  +++     R   P + T  S+++ + + 
Sbjct: 636 MTPDKISYTSVIAGFCR---IGDMRKAWALFNEMLQ----RGHLPTVVTYTSLVDGYCKM 688

Query: 395 GDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKINDPNL--LRRMILGGARPDAETY 452
             +  A+ L +E+K+   T     YN LI A+ +    D  L  L  M   G  PD  TY
Sbjct: 689 NRIDIADMLIDEMKRKGITPDVVTYNVLIAAHRRRGNLDKALEMLNEMKENGVLPDHMTY 748

Query: 453 SLLK 456
            +L+
Sbjct: 749 MMLE 752


>gi|414881814|tpg|DAA58945.1| TPA: hypothetical protein ZEAMMB73_003881 [Zea mays]
          Length = 792

 Score = 72.4 bits (176), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 97/445 (21%), Positives = 179/445 (40%), Gaps = 60/445 (13%)

Query: 32  SINRLRKLQLNKRALEVMEWVIRERPYRPKELDYSYLLEFTIK----------------- 74
           +I+ L KL+   RAL+V+   +RE  + P EL YS +++  +K                 
Sbjct: 226 TISGLCKLRDADRALQVLGK-MREAGFEPWELTYSSVVDVLVKVGRMDEALRLKDQMLLA 284

Query: 75  -------------NHG------ISQGEKLFCCIPKD--YQNELLYNNLVIACLDKGVIKL 113
                         HG      + +   LF  +  D      + Y  L+  C  +G+   
Sbjct: 285 TGKKMDVVLATMLMHGYCLHGEVGKALDLFDEVVSDGVTPTNVTYGVLIKGCDAEGMSDE 344

Query: 114 SLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMK 173
           + +  ++M   G  +S   FN L+I      +R      L ++  D   P V T+  L+ 
Sbjct: 345 TYKLCRQMIEQGLLLSTYEFN-LVIKGLLRDKRWKDAIGLLELVVDTGVPDVFTYGCLIH 403

Query: 174 IEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHA-VARLYTVAETYVEALEKSMTG 232
                  +   + ++  MK + V+P+ V+Y  L   +    R+    + Y E  +K    
Sbjct: 404 WLCKHQKLHEAVNLWDKMKEAGVKPSIVTYHSLLLGYCEKGRMDEALKLYSEMPDKGFPP 463

Query: 233 N--NWSTLDVLIILYGYLAKGKDLERIWATVQEL----PNVRSKSYVLAIEAFGRIAQVS 286
           N   ++TL     + GY+ K K  +  +A + E+     +    +Y + I     + +V 
Sbjct: 464 NEVTYTTL-----MKGYIKK-KAFDNAYALLNEMRQNGVSCGDYTYNILINGLYMVNRVC 517

Query: 287 RAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLA 346
             +E+     S   +  T  YNS+I+ + K G +  A G+ ++M   G  PN +TY    
Sbjct: 518 EVDEMLKRFLSEGFVPTTMTYNSIINGFVKAGMMGSAFGMYRQMRKKGITPNIVTYTSFI 577

Query: 347 LGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEE 406
            G  ++N         +L +KL+   +     P +    + I+ F ++G++  A +    
Sbjct: 578 DGYCRTN-------CCDLAVKLLIYVRRDGIQPDIAAYNAFIDTFCKQGNMSRALHFLVL 630

Query: 407 LKKANYTKYTFVYNTLIKAYVKAKI 431
           L K   T    VYN+ +  Y   K+
Sbjct: 631 LLKDGLTPDVTVYNSFVTGYKNLKM 655



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 58/303 (19%), Positives = 127/303 (41%), Gaps = 14/303 (4%)

Query: 59  RPKELDYSYLLEFTIKNHGISQGEKLFCCIPKDYQNELLYNNLVIACLDKGVIKLSLEYM 118
           + K  D +Y L   ++ +G+S G         DY   +L N L +      V ++  E +
Sbjct: 477 KKKAFDNAYALLNEMRQNGVSCG---------DYTYNILINGLYMV---NRVCEVD-EML 523

Query: 119 KKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEAND 178
           K+    G   + + +N +I      G   +   + RQM+   + P++ T+   +      
Sbjct: 524 KRFLSEGFVPTTMTYNSIINGFVKAGMMGSAFGMYRQMRKKGITPNIVTYTSFIDGYCRT 583

Query: 179 HNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTL 238
           +  +  +K+   ++R  ++P+  +Y             + A  ++  L K     + +  
Sbjct: 584 NCCDLAVKLLIYVRRDGIQPDIAAYNAFIDTFCKQGNMSRALHFLVLLLKDGLTPDVTVY 643

Query: 239 DVLIILYGYLAKGKDLERIW-ATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQS 297
           +  +  Y  L    +  + + + +++     ++ Y   I+ F ++  V+ A EL+ EM +
Sbjct: 644 NSFVTGYKNLKMMAEASKFYYSMIKQRVVADTEIYTTLIDGFSKVGNVAFALELYSEMMA 703

Query: 298 VKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEE 357
              +   + + ++    C++G ID A  LL +M      PN +TY  L   C +   ++E
Sbjct: 704 NHVIPDDKTFTALTHGLCRSGDIDGAKRLLDDMRRLDVSPNIVTYNMLINACVRDGKLQE 763

Query: 358 GFK 360
            F+
Sbjct: 764 AFQ 766



 Score = 49.7 bits (117), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 48/200 (24%), Positives = 79/200 (39%), Gaps = 30/200 (15%)

Query: 284 QVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYR 343
           ++  A  LW +M+      +   Y+S++  YC+ G +D+A  L  EM   G  PN +TY 
Sbjct: 410 KLHEAVNLWDKMKEAGVKPSIVTYHSLLLGYCEKGRMDEALKLYSEMPDKGFPPNEVTYT 469

Query: 344 HLALGCFKSNLVEEGFKALE----------------LGMKLITTKKVRS---------ST 378
            L  G  K    +  +  L                 L   L    +V           S 
Sbjct: 470 TLMKGYIKKKAFDNAYALLNEMRQNGVSCGDYTYNILINGLYMVNRVCEVDEMLKRFLSE 529

Query: 379 PWLETTL---SIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKIND-- 433
            ++ TT+   SII  F + G +G+A  ++ +++K   T     Y + I  Y +    D  
Sbjct: 530 GFVPTTMTYNSIINGFVKAGMMGSAFGMYRQMRKKGITPNIVTYTSFIDGYCRTNCCDLA 589

Query: 434 PNLLRRMILGGARPDAETYS 453
             LL  +   G +PD   Y+
Sbjct: 590 VKLLIYVRRDGIQPDIAAYN 609



 Score = 43.9 bits (102), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 68/310 (21%), Positives = 121/310 (39%), Gaps = 16/310 (5%)

Query: 152 ILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYC-ILATAH 210
           +  +M    V P    + I +       + +  ++V   M+ +  EP E++Y  ++    
Sbjct: 207 LFDEMAGAGVKPDERVYAITISGLCKLRDADRALQVLGKMREAGFEPWELTYSSVVDVLV 266

Query: 211 AVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKG---KDLERIWATVQELPNV 267
            V R+        + L    TG     +   ++++GY   G   K L+     V +    
Sbjct: 267 KVGRMDEALRLKDQMLLA--TGKKMDVVLATMLMHGYCLHGEVGKALDLFDEVVSDGVTP 324

Query: 268 RSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLL 327
            + +Y + I+            +L  +M     L +T ++N VI    ++     A GLL
Sbjct: 325 TNVTYGVLIKGCDAEGMSDETYKLCRQMIEQGLLLSTYEFNLVIKGLLRDKRWKDAIGLL 384

Query: 328 KEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSI 387
            E+ ++   P+  TY     GC    L +   + L   + L    K     P + T  S+
Sbjct: 385 -ELVVDTGVPDVFTY-----GCLIHWLCKH--QKLHEAVNLWDKMKEAGVKPSIVTYHSL 436

Query: 388 IEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKINDP--NLLRRMILGGA 445
           +  + EKG +  A  L+ E+    +      Y TL+K Y+K K  D    LL  M   G 
Sbjct: 437 LLGYCEKGRMDEALKLYSEMPDKGFPPNEVTYTTLMKGYIKKKAFDNAYALLNEMRQNGV 496

Query: 446 RPDAETYSLL 455
                TY++L
Sbjct: 497 SCGDYTYNIL 506



 Score = 42.7 bits (99), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 51/178 (28%), Positives = 74/178 (41%), Gaps = 8/178 (4%)

Query: 269 SKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLK 328
           +K Y + I A  R      A  L+ EM           Y   IS  CK    D+A  +L 
Sbjct: 185 AKMYDVVIRACVRGGMHCDAVRLFDEMAGAGVKPDERVYAITISGLCKLRDADRALQVLG 244

Query: 329 EMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSII 388
           +M   G +P  +TY  +     K   ++E  + L+  M L T KK+      L T L  +
Sbjct: 245 KMREAGFEPWELTYSSVVDVLVKVGRMDEALR-LKDQMLLATGKKMDV---VLATML--M 298

Query: 389 EIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKINDPN--LLRRMILGG 444
             +   G+VG A +LF+E+     T     Y  LIK      ++D    L R+MI  G
Sbjct: 299 HGYCLHGEVGKALDLFDEVVSDGVTPTNVTYGVLIKGCDAEGMSDETYKLCRQMIEQG 356


>gi|255661166|gb|ACU25752.1| pentatricopeptide repeat-containing protein [Glandularia dissecta]
          Length = 426

 Score = 72.4 bits (176), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 74/322 (22%), Positives = 149/322 (46%), Gaps = 22/322 (6%)

Query: 98  YNNLVIACLDKGVIKLSLEYMKKM---RVLGHSISYLVFNRLIILNSSPGRRKTIPNILR 154
           Y+ L+     +G+   +L +++KM   RV G  + Y   + LI L+          +I  
Sbjct: 12  YSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLY---SNLIELSRKLCDYSKAISIFS 68

Query: 155 QMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVAR 214
           ++K     P +  ++ ++ +            + S+M+ + V PN  SY  L T +   +
Sbjct: 69  RLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTASYSTLLTMYVENK 128

Query: 215 LYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQEL---PNVRSKS 271
            +  A +    + +     + +T +++I +YG L   K+ ++++  ++++   PNV S +
Sbjct: 129 KFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYN 188

Query: 272 YVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMS 331
            +L +  +G       A  L+  MQ     +    YNS++ +Y K    +KA+ L++EM 
Sbjct: 189 TLLRV--YGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQ 246

Query: 332 MNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTL--SIIE 389
             G +PN+ITY         S ++    K  +L    +  +K+RSS   ++  L  ++I 
Sbjct: 247 NRGIEPNSITY---------STIISIWGKVGKLDRAAMLFQKLRSSGVDIDQVLYQTMIV 297

Query: 390 IFAEKGDVGNAENLFEELKKAN 411
            +   G V +A+ L  ELK+ +
Sbjct: 298 AYERVGLVAHAKRLLHELKRPD 319



 Score = 55.8 bits (133), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 76/370 (20%), Positives = 162/370 (43%), Gaps = 20/370 (5%)

Query: 65  YSYLLEFTIKNHGISQGEKLFCCIPKD-YQNELLYNNLVIACLDKG-VIKLSLEYMKKMR 122
           YS L+E + K    S+   +F  + +  +  +L+  N +I    K  + + +   + +MR
Sbjct: 47  YSNLIELSRKLCDYSKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMR 106

Query: 123 VLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIE 182
             G + +   ++ L+ +     +     ++  +M+  K    ++T +I++ +       +
Sbjct: 107 TAGVTPNTASYSTLLTMYVENKKFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAK 166

Query: 183 GLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLI 242
              K++  M++  +EPN VSY  L   +  A L+  A      +++     N  T + ++
Sbjct: 167 EADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMM 226

Query: 243 ILYGYLAKGKDLERIWATVQELPN----VRSKSYVLAIEAFGRIAQVSRAEELWLEMQSV 298
           ++YG   K  + E+    +QE+ N      S +Y   I  +G++ ++ RA  L+ +++S 
Sbjct: 227 MIYG---KTLEHEKANNLIQEMQNRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSS 283

Query: 299 KQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEG 358
                   Y ++I  Y + G +  A  LL E+      P  I    LA     +  +EE 
Sbjct: 284 GVDIDQVLYQTMIVAYERVGLVAHAKRLLHELKRPDNIPRDIAIHILA----GAGRIEE- 338

Query: 359 FKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFV 418
             A  +  + I   +V+  T +      +I +F++    GN   +F++++   Y   + V
Sbjct: 339 --ATWVFRQAIDAGEVKDITVFER----MIHLFSKYKKYGNVVEVFDKMRGLGYFPDSXV 392

Query: 419 YNTLIKAYVK 428
              ++ AY K
Sbjct: 393 IALVLNAYGK 402



 Score = 47.4 bits (111), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 55/305 (18%), Positives = 115/305 (37%), Gaps = 78/305 (25%)

Query: 153 LRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAV 212
           L++M+ D+V   +  +  L+++     +    + ++S +KRS   P+ V+Y  +      
Sbjct: 32  LQKMEQDRVPGDLVLYSNLIELSRKLCDYSKAISIFSRLKRSGFTPDLVAYNAMINVFGK 91

Query: 213 ARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSKSY 272
           A+L+  A + +  +  +    N ++   L+ +Y                     V +K +
Sbjct: 92  AKLFREARSLISEMRTAGVTPNTASYSTLLTMY---------------------VENKKF 130

Query: 273 VLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSM 332
           + A+  F              EM+ +K L      N +I VY + G   +A  L   M  
Sbjct: 131 LEALSVFA-------------EMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRK 177

Query: 333 NGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFA 392
            G +PN ++Y                                           +++ ++ 
Sbjct: 178 MGIEPNVVSYN------------------------------------------TLLRVYG 195

Query: 393 EKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKINDP--NLLRRMILGGARPDAE 450
           +    G A +LF  +++ N  +    YN+++  Y K   ++   NL++ M   G  P++ 
Sbjct: 196 DAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQNRGIEPNSI 255

Query: 451 TYSLL 455
           TYS +
Sbjct: 256 TYSTI 260



 Score = 40.0 bits (92), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 32/126 (25%), Positives = 58/126 (46%), Gaps = 11/126 (8%)

Query: 307 YNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGM 366
           Y+++I+ + K G  D A   L++M  +    + + Y         SNL+E   K  +   
Sbjct: 12  YSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLY---------SNLIELSRKLCDYSK 62

Query: 367 KLITTKKVRSS--TPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIK 424
            +    +++ S  TP L    ++I +F +      A +L  E++ A  T  T  Y+TL+ 
Sbjct: 63  AISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTASYSTLLT 122

Query: 425 AYVKAK 430
            YV+ K
Sbjct: 123 MYVENK 128


>gi|293335157|ref|NP_001169529.1| uncharacterized protein LOC100383403 [Zea mays]
 gi|224029903|gb|ACN34027.1| unknown [Zea mays]
 gi|414887232|tpg|DAA63246.1| TPA: hypothetical protein ZEAMMB73_160132 [Zea mays]
          Length = 819

 Score = 72.4 bits (176), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 92/367 (25%), Positives = 157/367 (42%), Gaps = 23/367 (6%)

Query: 100 NLVIACLDK-GVIKLSLEY---MKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQ 155
           N+VI CL K G+   ++E    M++ R   H    + +  ++   S  G+ +    +   
Sbjct: 297 NIVIHCLVKIGLYGEAIELFNSMRERRTTCHP-DVVTYTSIMYSYSVCGQAENCKAVFDI 355

Query: 156 MKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARL 215
           M A+ V P++ +++ L+   A+       ++ +  +K++ + P+ VSY  L  A+  +  
Sbjct: 356 MVAEGVRPNIVSYNALLGAYASHGMHTEALETFKLLKQNGLRPDIVSYTSLLNAYGRSAQ 415

Query: 216 YTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQE---LPNVRSKSY 272
              A      + K+    N  + + LI  YG     K+   +   +++    P+V S S 
Sbjct: 416 PEKAREVFNEMRKNACKPNKVSYNALIDAYGSAGMLKEAISLLHEMEQDGIQPDVISIST 475

Query: 273 VLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSM 332
           +L   A GR  Q+++ + +    +S      T  YNS I  Y   G   KA  L   M  
Sbjct: 476 LLT--ACGRCKQLTKIDIILAAAKSRGIQLNTVAYNSGIGSYLSLGDYKKALVLYTSMRA 533

Query: 333 NGCKPNAITYRHLALGCFKSNLVEEGFKALE--LGMKLITTKKVRSSTPWLETTLSIIEI 390
              KP+A+TY  L  G  K     E  K  E  L + +  TK+V S         S+I  
Sbjct: 534 GNVKPDAVTYNILISGSCKLGRYVESLKFFEDMLDLNIHLTKEVYS---------SVICS 584

Query: 391 FAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVK--AKINDPNLLRRMILGGARPD 448
           + ++G +  A + F  +K+         Y TLIKAY    +     +L + M   G +PD
Sbjct: 585 YVKQGKLTEAASTFNSMKETGCFPDVLTYTTLIKAYSDDGSWRRAWDLFKEMENNGTQPD 644

Query: 449 AETYSLL 455
           A   S L
Sbjct: 645 AIVCSSL 651



 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 88/430 (20%), Positives = 158/430 (36%), Gaps = 55/430 (12%)

Query: 43  KRALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQGEKLFC------CIPKDYQNEL 96
           K A+ V  W+  +  Y  +   Y  ++    +++ + Q   LF       C P    N  
Sbjct: 134 KHAVHVFRWMKNQENYCARNDIYGMMIRLHARHNKVDQARGLFFEMQEWRCKP----NTD 189

Query: 97  LYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQM 156
            YN+L+ A    G    ++  M  M+      S   +N +I    + G  K    + ++M
Sbjct: 190 TYNSLIHAHARAGQWCWAINIMDDMQRAAIPPSRTTYNNVINACGAAGNWKKALELCKKM 249

Query: 157 KADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLY 216
             + V P + T +I++    N       +  +  MK S+V P+  +  I+        LY
Sbjct: 250 TENGVGPDLITHNIVLSAFKNGAQYSKAIAYFEIMKSSKVAPDTCTMNIVIHCLVKIGLY 309

Query: 217 TVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKG-----KDLERIWATVQELPNVRSK- 270
             A     ++ +  T  +   +    I+Y Y   G     K +  I       PN+ S  
Sbjct: 310 GEAIELFNSMRERRTTCHPDVVTYTSIMYSYSVCGQAENCKAVFDIMVAEGVRPNIVSYN 369

Query: 271 --------------------------------SYVLAIEAFGRIAQVSRAEELWLEMQSV 298
                                           SY   + A+GR AQ  +A E++ EM+  
Sbjct: 370 ALLGAYASHGMHTEALETFKLLKQNGLRPDIVSYTSLLNAYGRSAQPEKAREVFNEMRKN 429

Query: 299 KQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEG 358
                   YN++I  Y   G + +A  LL EM  +G +P+ I+   L   C +   + + 
Sbjct: 430 ACKPNKVSYNALIDAYGSAGMLKEAISLLHEMEQDGIQPDVISISTLLTACGRCKQLTK- 488

Query: 359 FKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFV 418
              +++ +    ++ ++ +T       S I  +   GD   A  L+  ++  N       
Sbjct: 489 ---IDIILAAAKSRGIQLNTVAYN---SGIGSYLSLGDYKKALVLYTSMRAGNVKPDAVT 542

Query: 419 YNTLIKAYVK 428
           YN LI    K
Sbjct: 543 YNILISGSCK 552



 Score = 48.5 bits (114), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 84/379 (22%), Positives = 148/379 (39%), Gaps = 64/379 (16%)

Query: 138 ILNSSPGR--RKTIPNILRQMKAD---KVAPHV--------------STFHILMKIEAND 178
           +LN   GR  R+  P ++R++      K A HV                + +++++ A  
Sbjct: 107 VLNCWAGRFARRNFPLLIREIAISGSLKHAVHVFRWMKNQENYCARNDIYGMMIRLHARH 166

Query: 179 HNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTL 238
           + ++    ++ +M+    +PN  +Y  L  AHA A  +  A   ++ ++++    + +T 
Sbjct: 167 NKVDQARGLFFEMQEWRCKPNTDTYNSLIHAHARAGQWCWAINIMDDMQRAAIPPSRTTY 226

Query: 239 DVLIILYGYLAKGKDLERIWATVQE---LPNVRSKSYVLAIEAFGRIAQVSRAEELWLEM 295
           + +I   G     K    +   + E    P++ + + VL+  AF   AQ S+A   +  M
Sbjct: 227 NNVINACGAAGNWKKALELCKKMTENGVGPDLITHNIVLS--AFKNGAQYSKAIAYFEIM 284

Query: 296 QSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEM--SMNGCKPNAITYRHLALG---CF 350
           +S K    T   N VI    K G   +A  L   M      C P+ +TY  +      C 
Sbjct: 285 KSSKVAPDTCTMNIVIHCLVKIGLYGEAIELFNSMRERRTTCHPDVVTYTSIMYSYSVCG 344

Query: 351 KSN--------LVEEGFK---------------------ALELGMKLITTKKVRSSTPWL 381
           ++         +V EG +                     ALE   KL+    +R   P +
Sbjct: 345 QAENCKAVFDIMVAEGVRPNIVSYNALLGAYASHGMHTEALET-FKLLKQNGLR---PDI 400

Query: 382 ETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKI--NDPNLLRR 439
            +  S++  +        A  +F E++K         YN LI AY  A +     +LL  
Sbjct: 401 VSYTSLLNAYGRSAQPEKAREVFNEMRKNACKPNKVSYNALIDAYGSAGMLKEAISLLHE 460

Query: 440 MILGGARPDAETYSLLKLA 458
           M   G +PD  + S L  A
Sbjct: 461 MEQDGIQPDVISISTLLTA 479



 Score = 39.3 bits (90), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 59/311 (18%), Positives = 123/311 (39%), Gaps = 45/311 (14%)

Query: 41  LNKRALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQGEKLF------CCIPKDYQN 94
           ++  ALE  + ++++   RP  + Y+ LL    ++    +  ++F       C P    N
Sbjct: 380 MHTEALETFK-LLKQNGLRPDIVSYTSLLNAYGRSAQPEKAREVFNEMRKNACKP----N 434

Query: 95  ELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILR 154
           ++ YN L+ A    G++K ++  + +M   G     +  + L+       +   I  IL 
Sbjct: 435 KVSYNALIDAYGSAGMLKEAISLLHEMEQDGIQPDVISISTLLTACGRCKQLTKIDIILA 494

Query: 155 QMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVAR 214
             K+  +  +   ++  +    +  + +  + +Y+ M+   V+P+ V+Y IL +      
Sbjct: 495 AAKSRGIQLNTVAYNSGIGSYLSLGDYKKALVLYTSMRAGNVKPDAVTYNILISGSCKLG 554

Query: 215 LYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSKSYVL 274
            Y  +  + E +           LD+ I    +L K                   + Y  
Sbjct: 555 RYVESLKFFEDM-----------LDLNI----HLTK-------------------EVYSS 580

Query: 275 AIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNG 334
            I ++ +  +++ A   +  M+          Y ++I  Y  +G   +A  L KEM  NG
Sbjct: 581 VICSYVKQGKLTEAASTFNSMKETGCFPDVLTYTTLIKAYSDDGSWRRAWDLFKEMENNG 640

Query: 335 CKPNAITYRHL 345
            +P+AI    L
Sbjct: 641 TQPDAIVCSSL 651


>gi|255572227|ref|XP_002527053.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223533615|gb|EEF35353.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 677

 Score = 72.4 bits (176), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 84/400 (21%), Positives = 160/400 (40%), Gaps = 41/400 (10%)

Query: 92  YQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPN 151
           + + + YN L+ A   +G++  + E M  M   G   +   +N +I      GR      
Sbjct: 217 FADIVTYNTLINAYCREGLLGEAFEVMNSMSGKGLKPTLFTYNAVINGLCKKGRYVRAKG 276

Query: 152 ILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHA 211
           +  +M +  ++P  +T++ L+     ++N      ++SDM    V P+ +S+  L    +
Sbjct: 277 VFNEMLSIGLSPDTTTYNTLLVESCRNNNFLEAKDIFSDMLHRGVSPDLISFSSLIGVSS 336

Query: 212 VARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKG---KDLERIWATVQELPNVR 268
                  A  Y   ++ S  G     +   I++ GY   G   + LE     +++   + 
Sbjct: 337 RNGHLDQALMYFRDMKTS--GLVPDNVIYTILINGYCRNGMMSEALEIRDKMLEQGCALD 394

Query: 269 SKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLK 328
             +Y   +    +   ++ A  L+ EM     +     + ++I  +CK G + KA  L  
Sbjct: 395 VVAYNTILNGLCKKKLLADANALFDEMVERGVVPDFCTFTTLIHGHCKEGNMGKALSLFG 454

Query: 329 EMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKV-------------- 374
            M+    KP+ +TY  L  G  K+  +E   KA EL  ++I+ K                
Sbjct: 455 IMTQKNIKPDIVTYNILIDGFCKTTEME---KANELWNEMISRKIFPNHISYAILVNGYC 511

Query: 375 -----------------RSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTF 417
                            +   P L T  ++I+ +   GD+  A+    ++        + 
Sbjct: 512 NLGFVSEAFRLWDEMIRKGIKPTLVTCNTVIKGYCRSGDLSKADEFLGKMISEGVGPDSI 571

Query: 418 VYNTLIKAYVKAKINDPN--LLRRMILGGARPDAETYSLL 455
            YNTLI  +VK +  D    L+ +M   G +PD  TY+++
Sbjct: 572 TYNTLINGFVKGEYMDKAFFLINKMETKGLQPDVVTYNVI 611



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 84/396 (21%), Positives = 158/396 (39%), Gaps = 45/396 (11%)

Query: 98  YNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMK 157
           YN ++     KG    +     +M  +G S     +N L++ +          +I   M 
Sbjct: 258 YNAVINGLCKKGRYVRAKGVFNEMLSIGLSPDTTTYNTLLVESCRNNNFLEAKDIFSDML 317

Query: 158 ADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYT 217
              V+P + +F  L+ + + + +++  +  + DMK S + P+ V Y IL   +    + +
Sbjct: 318 HRGVSPDLISFSSLIGVSSRNGHLDQALMYFRDMKTSGLVPDNVIYTILINGYCRNGMMS 377

Query: 218 VA-------------------ETYVEAL-EKSMTGNNWSTLDVLI-------------IL 244
            A                    T +  L +K +  +  +  D ++             ++
Sbjct: 378 EALEIRDKMLEQGCALDVVAYNTILNGLCKKKLLADANALFDEMVERGVVPDFCTFTTLI 437

Query: 245 YGYLAKG---KDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQL 301
           +G+  +G   K L       Q+       +Y + I+ F +  ++ +A ELW EM S K  
Sbjct: 438 HGHCKEGNMGKALSLFGIMTQKNIKPDIVTYNILIDGFCKTTEMEKANELWNEMISRKIF 497

Query: 302 KATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKA 361
                Y  +++ YC  GF+ +A  L  EM   G KP  +T   +  G  +S  +    KA
Sbjct: 498 PNHISYAILVNGYCNLGFVSEAFRLWDEMIRKGIKPTLVTCNTVIKGYCRSGDLS---KA 554

Query: 362 LELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNT 421
            E   K+I+        P   T  ++I  F +   +  A  L  +++          YN 
Sbjct: 555 DEFLGKMIS----EGVGPDSITYNTLINGFVKGEYMDKAFFLINKMETKGLQPDVVTYNV 610

Query: 422 LIKAYVK-AKINDPNL-LRRMILGGARPDAETYSLL 455
           ++  + +  ++ +  L LR+MI  G  PD  TY+ L
Sbjct: 611 ILNGFCRQGRMQEAELILRKMIERGIDPDRSTYTTL 646



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 81/382 (21%), Positives = 152/382 (39%), Gaps = 59/382 (15%)

Query: 56  RPYRPKELDYSYLLEFTIKNHGISQGEKLFCCIPKDYQ------NELLYNNLVIACLDKG 109
           R   P  + +S L+  + +N  + Q    F    +D +      + ++Y  L+      G
Sbjct: 319 RGVSPDLISFSSLIGVSSRNGHLDQALMYF----RDMKTSGLVPDNVIYTILINGYCRNG 374

Query: 110 VIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPN---ILRQMKADKVAPHVS 166
           ++  +LE   KM   G ++  + +N ++   +   ++K + +   +  +M    V P   
Sbjct: 375 MMSEALEIRDKMLEQGCALDVVAYNTIL---NGLCKKKLLADANALFDEMVERGVVPDFC 431

Query: 167 TFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEAL 226
           TF  L+     + N+   + ++  M +  ++P+ V+Y IL             + + +  
Sbjct: 432 TFTTLIHGHCKEGNMGKALSLFGIMTQKNIKPDIVTYNILI------------DGFCKTT 479

Query: 227 EKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVS 286
           E       W+ +                     + +  PN    SY + +  +  +  VS
Sbjct: 480 EMEKANELWNEM--------------------ISRKIFPN--HISYAILVNGYCNLGFVS 517

Query: 287 RAEELWLEMQSVKQLKAT-EQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHL 345
            A  LW EM   K +K T    N+VI  YC++G + KA   L +M   G  P++ITY  L
Sbjct: 518 EAFRLWDEMIR-KGIKPTLVTCNTVIKGYCRSGDLSKADEFLGKMISEGVGPDSITYNTL 576

Query: 346 ALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFE 405
             G  K   +++ F        LI   + +   P + T   I+  F  +G +  AE +  
Sbjct: 577 INGFVKGEYMDKAFF-------LINKMETKGLQPDVVTYNVILNGFCRQGRMQEAELILR 629

Query: 406 ELKKANYTKYTFVYNTLIKAYV 427
           ++ +         Y TLI  YV
Sbjct: 630 KMIERGIDPDRSTYTTLINGYV 651



 Score = 52.0 bits (123), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 50/235 (21%), Positives = 99/235 (42%), Gaps = 5/235 (2%)

Query: 129 SYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVY 188
            +  F  LI  +   G      ++   M    + P + T++IL+        +E   +++
Sbjct: 429 DFCTFTTLIHGHCKEGNMGKALSLFGIMTQKNIKPDIVTYNILIDGFCKTTEMEKANELW 488

Query: 189 SDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYL 248
           ++M   ++ PN +SY IL   +    L  V+E +    E    G   + +    ++ GY 
Sbjct: 489 NEMISRKIFPNHISYAILVNGYC--NLGFVSEAFRLWDEMIRKGIKPTLVTCNTVIKGYC 546

Query: 249 AKG---KDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATE 305
             G   K  E +   + E     S +Y   I  F +   + +A  L  +M++        
Sbjct: 547 RSGDLSKADEFLGKMISEGVGPDSITYNTLINGFVKGEYMDKAFFLINKMETKGLQPDVV 606

Query: 306 QYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFK 360
            YN +++ +C+ G + +A  +L++M   G  P+  TY  L  G    + ++E F+
Sbjct: 607 TYNVILNGFCRQGRMQEAELILRKMIERGIDPDRSTYTTLINGYVSQDNLKEAFR 661



 Score = 47.4 bits (111), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 64/302 (21%), Positives = 120/302 (39%), Gaps = 43/302 (14%)

Query: 164 HVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYV 223
           +V T +I++     DH I+ +     DM++  +  + V+Y  L  A+    L        
Sbjct: 184 NVYTLNIMVNALCKDHKIDDVKPFLIDMEQKGIFADIVTYNTLINAYCREGLLG------ 237

Query: 224 EALE--KSMTGNNW--STLDVLIILYGYLAKGKDLERIWATVQELPNV----RSKSYVLA 275
           EA E   SM+G     +      ++ G   KG+ + R      E+ ++     + +Y   
Sbjct: 238 EAFEVMNSMSGKGLKPTLFTYNAVINGLCKKGRYV-RAKGVFNEMLSIGLSPDTTTYNTL 296

Query: 276 IEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGC 335
           +    R      A++++ +M           ++S+I V  +NG +D+A    ++M  +G 
Sbjct: 297 LVESCRNNNFLEAKDIFSDMLHRGVSPDLISFSSLIGVSSRNGHLDQALMYFRDMKTSGL 356

Query: 336 KPNAITYRHLALGCFKSNLVEEGF----KALELGMKL-----------ITTKKV------ 374
            P+ + Y  L  G  ++ ++ E      K LE G  L           +  KK+      
Sbjct: 357 VPDNVIYTILINGYCRNGMMSEALEIRDKMLEQGCALDVVAYNTILNGLCKKKLLADANA 416

Query: 375 -------RSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYV 427
                  R   P   T  ++I    ++G++G A +LF  + + N       YN LI  + 
Sbjct: 417 LFDEMVERGVVPDFCTFTTLIHGHCKEGNMGKALSLFGIMTQKNIKPDIVTYNILIDGFC 476

Query: 428 KA 429
           K 
Sbjct: 477 KT 478



 Score = 42.0 bits (97), Expect = 0.61,   Method: Compositional matrix adjust.
 Identities = 46/202 (22%), Positives = 86/202 (42%), Gaps = 24/202 (11%)

Query: 267 VRSKSYVLAIEAFG-------RIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGF 319
           +R K ++++I A         ++  V  A E++ E+            N +++  CK+  
Sbjct: 141 LRRKGFLVSINACNSLLGGLVKMGWVDLAWEVYNEIARSGIELNVYTLNIMVNALCKDHK 200

Query: 320 IDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTP 379
           ID     L +M   G   + +TY  L     +  L+ E F+     M  ++ K ++   P
Sbjct: 201 IDDVKPFLIDMEQKGIFADIVTYNTLINAYCREGLLGEAFEV----MNSMSGKGLK---P 253

Query: 380 WLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLI------KAYVKAKIND 433
            L T  ++I    +KG    A+ +F E+     +  T  YNTL+        +++AK   
Sbjct: 254 TLFTYNAVINGLCKKGRYVRAKGVFNEMLSIGLSPDTTTYNTLLVESCRNNNFLEAK--- 310

Query: 434 PNLLRRMILGGARPDAETYSLL 455
            ++   M+  G  PD  ++S L
Sbjct: 311 -DIFSDMLHRGVSPDLISFSSL 331


>gi|387219245|gb|AFJ69331.1| putative udp-glucosyltransferase, partial [Nannochloropsis gaditana
           CCMP526]
          Length = 521

 Score = 72.4 bits (176), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 66/286 (23%), Positives = 119/286 (41%), Gaps = 25/286 (8%)

Query: 163 PHVSTFHILMKIEANDHNIEGLMKVYSDMKRSE-----------VEPNEVSYCILATAHA 211
           P V T+  LM   A   + EG   V   M   E           V PN ++Y  L TA+A
Sbjct: 226 PDVVTYTTLMHAYAGRGDTEGAEAVLRRMLEGEGGRVREEEVLRVLPNVMTYTTLMTAYA 285

Query: 212 VARLYTVAETYVEALEKSMTGNNWSTLDVLIILY---GYLAKGKDLERIWATVQELPNVR 268
                  +E  +E +E++    N  T  VL+  Y   G +   + + R   +    PN  
Sbjct: 286 AGGDVEGSEAVLERMEEACIAPNVMTYTVLMTAYTLRGDVKGAEGVLRRMISAYVAPN-- 343

Query: 269 SKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLK 328
           + +Y   + A+      + AEE+   M++   L     + ++++VY   G ++ A G+L 
Sbjct: 344 ANTYTTLLHAYTVNGNAAGAEEVLARMEAAGVLPTALTFATLMTVYAARGEVESAKGVLA 403

Query: 329 EMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSII 388
            M   G  P A+ +  L      + +V       E   +++  ++  +   +  T  +++
Sbjct: 404 RMEAAGVGPTAMAFDTL----LNAYVVAGDVGGAE---QVLRRREAEAYPDFPLTYNTLM 456

Query: 389 EIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKINDP 434
             +A+KGDV  AE +   ++           +TL+ AY +A   DP
Sbjct: 457 NGYADKGDVAGAEGVLARMRAKGVGPDETTLSTLLHAYAEA--GDP 500



 Score = 49.3 bits (116), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 54/255 (21%), Positives = 98/255 (38%), Gaps = 40/255 (15%)

Query: 94  NELLYNNLVIACLDKGVIKLS---LEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIP 150
           N + Y  L+ A    G ++ S   LE M++  +  + ++Y V      L    G  K   
Sbjct: 273 NVMTYTTLMTAYAAGGDVEGSEAVLERMEEACIAPNVMTYTVLMTAYTLR---GDVKGAE 329

Query: 151 NILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAH 210
            +LR+M +  VAP+ +T+  L+     + N  G  +V + M+ + V P  +++  L T +
Sbjct: 330 GVLRRMISAYVAPNANTYTTLLHAYTVNGNAAGAEEVLARMEAAGVLPTALTFATLMTVY 389

Query: 211 AVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSK 270
           A       A+  +  +E +  G      D L+                            
Sbjct: 390 AARGEVESAKGVLARMEAAGVGPTAMAFDTLL---------------------------N 422

Query: 271 SYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEM 330
           +YV+A         V  AE++    ++         YN++++ Y   G +  A G+L  M
Sbjct: 423 AYVVA-------GDVGGAEQVLRRREAEAYPDFPLTYNTLMNGYADKGDVAGAEGVLARM 475

Query: 331 SMNGCKPNAITYRHL 345
              G  P+  T   L
Sbjct: 476 RAKGVGPDETTLSTL 490


>gi|242050034|ref|XP_002462761.1| hypothetical protein SORBIDRAFT_02g031520 [Sorghum bicolor]
 gi|241926138|gb|EER99282.1| hypothetical protein SORBIDRAFT_02g031520 [Sorghum bicolor]
          Length = 535

 Score = 72.4 bits (176), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 58/230 (25%), Positives = 107/230 (46%), Gaps = 19/230 (8%)

Query: 237 TLDVLI---ILYGYLAKGK--DLERIWATVQE---LPNVRSKSYVLAIEAFGRIAQVSRA 288
           T DV++   +++ +   G+  + ER++A +Q+   +PNV   +Y   I+A  R  QV RA
Sbjct: 237 TPDVVLYTAVVHAWCRAGQLDEAERVFAEMQQSGIMPNV--YTYTAVIDAMYRAGQVPRA 294

Query: 289 EELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHL-AL 347
           +EL  +M        T  +N+++  + K G  ++   +  +M    C+P+ ITY  L   
Sbjct: 295 QELLCQMIDSGCPPNTATFNAIMRAHVKAGRSEQVLQVHNQMHQLRCEPDIITYNFLIET 354

Query: 348 GCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEEL 407
            C K      G   L+  +K++     +   P   T   +  +    G++G A  L+E++
Sbjct: 355 HCGK------GQGNLDAALKVLDKMIAKKCVPDCHTFNPMFRLLVVLGNIGAAHKLYEKM 408

Query: 408 KKANYTKYTFVYNTLIKAYVKAKINDP--NLLRRMILGGARPDAETYSLL 455
           ++         YN L+K + K K  D    + + M + G  P+  TY+ L
Sbjct: 409 RELQCKPNVVTYNCLLKLFNKEKSMDMVLRMKKNMDVEGIEPNMHTYAAL 458



 Score = 40.8 bits (94), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 63/325 (19%), Positives = 131/325 (40%), Gaps = 19/325 (5%)

Query: 18  MRE-GFPVHRGEIFHSINRLRKLQLNKRALEVMEWVIRERPYRPKELDYSYLLEFTIKNH 76
           MRE   P+    IF  I R  + ++   A ++   +       P+    + LL    K  
Sbjct: 161 MRERAVPISSRLIFALIRRYVRAEMPSEAADLFRRMEEYGSGAPEPATLASLLAALSKKR 220

Query: 77  GISQGEKLF-CCIPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNR 135
             S+ + LF  C      + +LY  +V A    G +  +     +M+  G   +   +  
Sbjct: 221 LASEAQALFDSCRTVFTPDVVLYTAVVHAWCRAGQLDEAERVFAEMQQSGIMPNVYTYTA 280

Query: 136 LIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSE 195
           +I      G+      +L QM      P+ +TF+ +M+        E +++V++ M +  
Sbjct: 281 VIDAMYRAGQVPRAQELLCQMIDSGCPPNTATFNAIMRAHVKAGRSEQVLQVHNQMHQLR 340

Query: 196 VEPNEVSYCILATAHAVARLYTVAETYVEALEKSMT------GNNWSTLDVLIILYGYLA 249
            EP+ ++Y  L   H   +     +  ++ L+K +        + ++ +  L+++ G + 
Sbjct: 341 CEPDIITYNFLIETH-CGKGQGNLDAALKVLDKMIAKKCVPDCHTFNPMFRLLVVLGNIG 399

Query: 250 KGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATE---- 305
               L      +Q  PNV + + +L      ++    ++ ++ L M+    ++  E    
Sbjct: 400 AAHKLYEKMRELQCKPNVVTYNCLL------KLFNKEKSMDMVLRMKKNMDVEGIEPNMH 453

Query: 306 QYNSVISVYCKNGFIDKASGLLKEM 330
            Y ++I  +C  G   +A   LKEM
Sbjct: 454 TYAALIEAFCGRGNWKRAHATLKEM 478


>gi|449438705|ref|XP_004137128.1| PREDICTED: pentatricopeptide repeat-containing protein At2g15630,
           mitochondrial-like [Cucumis sativus]
          Length = 628

 Score = 72.4 bits (176), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 85/392 (21%), Positives = 154/392 (39%), Gaps = 37/392 (9%)

Query: 98  YNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMK 157
           +N ++     +G +K + +++  M   G   + + +N ++    S GR +    IL  MK
Sbjct: 224 FNIMINVLCKEGKLKKAKDFVGHMETSGVKPNIVTYNTIVHGYCSSGRVEAADAILTTMK 283

Query: 158 ADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYT 217
             K+ P   T+  L+        +E   K++ +M +  + P+ V Y  L           
Sbjct: 284 RQKIEPDSFTYGSLISGMCKQGRLEEASKIFEEMVQKGLRPSAVIYNTLIDGFCNKGNLD 343

Query: 218 VAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQE---LPNVRSKSYVL 274
           +A  Y + + K       ST + LI       +  + E +   +QE    P+  + +Y +
Sbjct: 344 MASAYKDEMLKKGISPTMSTYNSLIHALFMEQRTDEAECMIKEIQEKGISPD--AITYNI 401

Query: 275 AIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNG 334
            I  + R A   +A  L  EM +       + Y S++ V  K   + +A  L K+++  G
Sbjct: 402 LINGYCRCANAKKAFLLHDEMLASGIKPTKKTYTSLLHVLSKKNRMKEADDLFKKITSEG 461

Query: 335 CKPNAITYRHLALG-CFKSNLVEEGFKAL----------------------------ELG 365
             P+ I +  L  G C  SN V+  F+ L                            E  
Sbjct: 462 VLPDVIMFNALIDGHCSNSN-VKGAFELLKDMDRMKVPPDEVTFNTIMQGHCREGKVEEA 520

Query: 366 MKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKA 425
            +L    K R   P   +  ++I  ++ +GD+ +A  +  E+    +      YN L++ 
Sbjct: 521 RELFDEMKRRGIKPDHISFNTLISGYSRRGDIKDAFRVRNEMLDTGFNPTVLTYNALVQG 580

Query: 426 YVKAKIND--PNLLRRMILGGARPDAETYSLL 455
             K +  D    LL+ M+  G  PD  TY  L
Sbjct: 581 LCKNQEGDLAEELLKEMVSKGMTPDDTTYFTL 612



 Score = 63.2 bits (152), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 59/225 (26%), Positives = 104/225 (46%), Gaps = 21/225 (9%)

Query: 243 ILYGYLAKGK-DLER------IWATVQE---LPNVRSKSYVLAIEAFGRIAQVSRAEELW 292
           I++ YL K   D+ R       + T++E   LP + + + +L++  F ++ +   A  L+
Sbjct: 152 IVFDYLIKSCCDMNRADEAFECFYTMKEKGVLPTIETCNSLLSL--FLKLNRTEAAWVLY 209

Query: 293 LEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKS 352
            EM  ++   +   +N +I+V CK G + KA   +  M  +G KPN +TY  +  G   S
Sbjct: 210 AEMFRLRIKSSVYTFNIMINVLCKEGKLKKAKDFVGHMETSGVKPNIVTYNTIVHGYCSS 269

Query: 353 NLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANY 412
             VE           ++TT K +   P   T  S+I    ++G +  A  +FEE+ +   
Sbjct: 270 GRVEA-------ADAILTTMKRQKIEPDSFTYGSLISGMCKQGRLEEASKIFEEMVQKGL 322

Query: 413 TKYTFVYNTLIKAYV-KAKINDPNLLR-RMILGGARPDAETYSLL 455
                +YNTLI  +  K  ++  +  +  M+  G  P   TY+ L
Sbjct: 323 RPSAVIYNTLIDGFCNKGNLDMASAYKDEMLKKGISPTMSTYNSL 367



 Score = 58.2 bits (139), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 76/397 (19%), Positives = 157/397 (39%), Gaps = 51/397 (12%)

Query: 45  ALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQGEKLFC-CIPKDYQ-NELLYNNLV 102
           A + +   ++ +   P    Y  L+    K   + +  K+F   + K  + + ++YN L+
Sbjct: 274 AADAILTTMKRQKIEPDSFTYGSLISGMCKQGRLEEASKIFEEMVQKGLRPSAVIYNTLI 333

Query: 103 IACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVA 162
               +KG + ++  Y  +M   G S +   +N LI       R      ++++++   ++
Sbjct: 334 DGFCNKGNLDMASAYKDEMLKKGISPTMSTYNSLIHALFMEQRTDEAECMIKEIQEKGIS 393

Query: 163 PHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETY 222
           P   T++IL+       N +    ++ +M  S ++P + +Y  L   H +++   + E  
Sbjct: 394 PDAITYNILINGYCRCANAKKAFLLHDEMLASGIKPTKKTYTSLL--HVLSKKNRMKE-- 449

Query: 223 VEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRI 282
                                         DL +   +   LP+V    +   I+     
Sbjct: 450 ----------------------------ADDLFKKITSEGVLPDV--IMFNALIDGHCSN 479

Query: 283 AQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITY 342
           + V  A EL  +M  +K       +N+++  +C+ G +++A  L  EM   G KP+ I++
Sbjct: 480 SNVKGAFELLKDMDRMKVPPDEVTFNTIMQGHCREGKVEEARELFDEMKRRGIKPDHISF 539

Query: 343 RHLALGCFKSNLVEEGFKA----LELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVG 398
             L  G  +   +++ F+     L+ G             P + T  ++++   +  +  
Sbjct: 540 NTLISGYSRRGDIKDAFRVRNEMLDTGF-----------NPTVLTYNALVQGLCKNQEGD 588

Query: 399 NAENLFEELKKANYTKYTFVYNTLIKAYVKAKINDPN 435
            AE L +E+     T     Y TLI+   K  I D N
Sbjct: 589 LAEELLKEMVSKGMTPDDTTYFTLIEGIAKVNIPDEN 625



 Score = 53.1 bits (126), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 76/377 (20%), Positives = 151/377 (40%), Gaps = 30/377 (7%)

Query: 92  YQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPN 151
           +++ ++++ L+ +C D      + E    M+  G   +    N L+ L     R +    
Sbjct: 148 FKSSIVFDYLIKSCCDMNRADEAFECFYTMKEKGVLPTIETCNSLLSLFLKLNRTEAAWV 207

Query: 152 ILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHA 211
           +  +M   ++   V TF+I++ +   +  ++        M+ S V+PN V+Y  +   + 
Sbjct: 208 LYAEMFRLRIKSSVYTFNIMINVLCKEGKLKKAKDFVGHMETSGVKPNIVTYNTIVHGYC 267

Query: 212 VARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQEL--PNVRS 269
            +     A+  +  +++     +  T   LI   G   +G+ LE      +E+    +R 
Sbjct: 268 SSGRVEAADAILTTMKRQKIEPDSFTYGSLI--SGMCKQGR-LEEASKIFEEMVQKGLRP 324

Query: 270 KS--YVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLL 327
            +  Y   I+ F     +  A     EM           YNS+I         D+A  ++
Sbjct: 325 SAVIYNTLIDGFCNKGNLDMASAYKDEMLKKGISPTMSTYNSLIHALFMEQRTDEAECMI 384

Query: 328 KEMSMNGCKPNAITYRHLALGCFKSNLVEEGF----KALELGMKLITTKKVRSSTPWLET 383
           KE+   G  P+AITY  L  G  +    ++ F    + L  G+K           P  +T
Sbjct: 385 KEIQEKGISPDAITYNILINGYCRCANAKKAFLLHDEMLASGIK-----------PTKKT 433

Query: 384 TLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAY-----VKAKINDPNLLR 438
             S++ + ++K  +  A++LF+++          ++N LI  +     VK       LL+
Sbjct: 434 YTSLLHVLSKKNRMKEADDLFKKITSEGVLPDVIMFNALIDGHCSNSNVKGAF---ELLK 490

Query: 439 RMILGGARPDAETYSLL 455
            M      PD  T++ +
Sbjct: 491 DMDRMKVPPDEVTFNTI 507


>gi|422294672|gb|EKU21972.1| putative udp-glucosyltransferase, partial [Nannochloropsis gaditana
           CCMP526]
          Length = 535

 Score = 72.4 bits (176), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 66/286 (23%), Positives = 119/286 (41%), Gaps = 25/286 (8%)

Query: 163 PHVSTFHILMKIEANDHNIEGLMKVYSDMKRSE-----------VEPNEVSYCILATAHA 211
           P V T+  LM   A   + EG   V   M   E           V PN ++Y  L TA+A
Sbjct: 240 PDVVTYTTLMHAYAGRGDTEGAEAVLRRMLEGEGGRVREEEVLRVLPNVMTYTTLMTAYA 299

Query: 212 VARLYTVAETYVEALEKSMTGNNWSTLDVLIILY---GYLAKGKDLERIWATVQELPNVR 268
                  +E  +E +E++    N  T  VL+  Y   G +   + + R   +    PN  
Sbjct: 300 AGGDVEGSEAVLERMEEACIAPNVMTYTVLMTAYTLRGDVKGAEGVLRRMISAYVAPN-- 357

Query: 269 SKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLK 328
           + +Y   + A+      + AEE+   M++   L     + ++++VY   G ++ A G+L 
Sbjct: 358 ANTYTTLLHAYTVNGNAAGAEEVLARMEAAGVLPTALTFATLMTVYAARGEVESAKGVLA 417

Query: 329 EMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSII 388
            M   G  P A+ +  L      + +V       E   +++  ++  +   +  T  +++
Sbjct: 418 RMEAAGVGPTAMAFDTL----LNAYVVAGDVGGAE---QVLRRREAEAYPDFPLTYNTLM 470

Query: 389 EIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKINDP 434
             +A+KGDV  AE +   ++           +TL+ AY +A   DP
Sbjct: 471 NGYADKGDVAGAEGVLARMRAKGVGPDETTLSTLLHAYAEA--GDP 514



 Score = 48.9 bits (115), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 54/255 (21%), Positives = 98/255 (38%), Gaps = 40/255 (15%)

Query: 94  NELLYNNLVIACLDKGVIKLS---LEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIP 150
           N + Y  L+ A    G ++ S   LE M++  +  + ++Y V      L    G  K   
Sbjct: 287 NVMTYTTLMTAYAAGGDVEGSEAVLERMEEACIAPNVMTYTVLMTAYTLR---GDVKGAE 343

Query: 151 NILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAH 210
            +LR+M +  VAP+ +T+  L+     + N  G  +V + M+ + V P  +++  L T +
Sbjct: 344 GVLRRMISAYVAPNANTYTTLLHAYTVNGNAAGAEEVLARMEAAGVLPTALTFATLMTVY 403

Query: 211 AVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSK 270
           A       A+  +  +E +  G      D L+                            
Sbjct: 404 AARGEVESAKGVLARMEAAGVGPTAMAFDTLL---------------------------N 436

Query: 271 SYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEM 330
           +YV+A         V  AE++    ++         YN++++ Y   G +  A G+L  M
Sbjct: 437 AYVVA-------GDVGGAEQVLRRREAEAYPDFPLTYNTLMNGYADKGDVAGAEGVLARM 489

Query: 331 SMNGCKPNAITYRHL 345
              G  P+  T   L
Sbjct: 490 RAKGVGPDETTLSTL 504


>gi|224103707|ref|XP_002313163.1| predicted protein [Populus trichocarpa]
 gi|222849571|gb|EEE87118.1| predicted protein [Populus trichocarpa]
          Length = 643

 Score = 72.4 bits (176), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 83/359 (23%), Positives = 141/359 (39%), Gaps = 44/359 (12%)

Query: 98  YNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRR-KTIPNILRQM 156
           Y +L+ AC+  G  + ++   KKM   G   + + +N ++ +    G     I  +   M
Sbjct: 36  YTSLITACVSNGRYREAVMVFKKMEEEGCKPTLITYNVILNVYGKMGMPWNKITGLFEGM 95

Query: 157 KADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLY 216
           K   + P   T++ L+         E    V+ DMK     P++V+Y  L   +  +R  
Sbjct: 96  KNAGILPDEYTYNTLITCCRRGSLYEEAAAVFEDMKSMGFVPDKVTYNTLLDVYGKSRRI 155

Query: 217 TVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSKSYVLAI 276
             A   +E L + M  N  S     I+ Y  L                           I
Sbjct: 156 KEA---IEVL-REMEVNGCSP---SIVTYNSL---------------------------I 181

Query: 277 EAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCK 336
            A+ R   +  A EL  +M           Y +++S + + G  + A  + +EM   GCK
Sbjct: 182 SAYARDGLLEEAMELKNQMVERGIKLDVFTYTAMLSGFVRTGKDESAMRVFEEMRTAGCK 241

Query: 337 PNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGD 396
           PN  T+  L     K +     F  +   MK+    K+    P + T  +++ +F + G 
Sbjct: 242 PNICTFNAL----IKMHGNRGKFAEM---MKVFEEIKICCCVPDIVTWNTLLAVFGQNGM 294

Query: 397 VGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKINDP--NLLRRMILGGARPDAETYS 453
                 +F+E+K+  +      YNTLI AY +    D    + +RM+  G  PD  TY+
Sbjct: 295 DSEVSGVFKEMKRVGFVPERDTYNTLISAYSRCGSFDQAMAMYKRMLDTGITPDLSTYN 353



 Score = 68.9 bits (167), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 70/366 (19%), Positives = 160/366 (43%), Gaps = 16/366 (4%)

Query: 94  NELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNIL 153
           N   +N L+    ++G     ++  +++++       + +N L+ +    G    +  + 
Sbjct: 243 NICTFNALIKMHGNRGKFAEMMKVFEEIKICCCVPDIVTWNTLLAVFGQNGMDSEVSGVF 302

Query: 154 RQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVA 213
           ++MK     P   T++ L+   +   + +  M +Y  M  + + P+  +Y  +  A A  
Sbjct: 303 KEMKRVGFVPERDTYNTLISAYSRCGSFDQAMAMYKRMLDTGITPDLSTYNAVLAALARG 362

Query: 214 RLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSKSYV 273
            L+  +E  +  ++  M   N  T   L+  Y   A GK++ R+ A  +E+ +   + + 
Sbjct: 363 GLWEQSEKILAEMQDGMCKPNELTHCSLLHAY---ANGKEIGRMLALAEEICSGVIEPHA 419

Query: 274 LAIEAF----GRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKE 329
           + ++       +   +  AE  +LE++           N++I++Y +   + K + +L  
Sbjct: 420 VLLKTLVLVNSKCDLLLEAERAFLELKRKGFSPDLSTLNAMIAIYGRRQMVTKTNEILNF 479

Query: 330 MSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIE 389
           M  +G  P+  TY  L     +S    E F+  E  +K I  K ++   P + +  ++I 
Sbjct: 480 MKESGFTPSLATYNSLMYMHSQS----ENFERSEEVLKEILAKGIK---PDIISYNTVIF 532

Query: 390 IFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKINDP--NLLRRMILGGARP 447
            +   G +  A ++F E++++        YNT + +Y    + +   +++  MI  G +P
Sbjct: 533 AYCRNGRMKEASHIFSEMRESGLIPDVITYNTFVASYAADSMFEEAIDVVCYMIKHGCKP 592

Query: 448 DAETYS 453
           +  TY+
Sbjct: 593 NQNTYN 598



 Score = 68.2 bits (165), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 86/463 (18%), Positives = 186/463 (40%), Gaps = 77/463 (16%)

Query: 33  INRLRKLQLNKRALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQGEKLF------C 86
           I   R+  L + A  V E  ++   + P ++ Y+ LL+   K+  I +  ++        
Sbjct: 111 ITCCRRGSLYEEAAAVFE-DMKSMGFVPDKVTYNTLLDVYGKSRRIKEAIEVLREMEVNG 169

Query: 87  CIPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRR 146
           C P    + + YN+L+ A    G+++ ++E   +M   G  +    +  ++      G+ 
Sbjct: 170 CSP----SIVTYNSLISAYARDGLLEEAMELKNQMVERGIKLDVFTYTAMLSGFVRTGKD 225

Query: 147 KTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCIL 206
           ++   +  +M+     P++ TF+ L+K+  N      +MKV+ ++K     P+ V+    
Sbjct: 226 ESAMRVFEEMRTAGCKPNICTFNALIKMHGNRGKFAEMMKVFEEIKICCCVPDIVT---- 281

Query: 207 ATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPN 266
                                       W+T   L+ ++G      ++  ++  ++ +  
Sbjct: 282 ----------------------------WNT---LLAVFGQNGMDSEVSGVFKEMKRVGF 310

Query: 267 VRSK-SYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASG 325
           V  + +Y   I A+ R     +A  ++  M           YN+V++   + G  +++  
Sbjct: 311 VPERDTYNTLISAYSRCGSFDQAMAMYKRMLDTGITPDLSTYNAVLAALARGGLWEQSEK 370

Query: 326 LLKEMSMNGCKPNAITY--------------RHLALGCFKSNLVEEGFKALELGMKLITT 371
           +L EM    CKPN +T+              R LAL     + V E    L   + L+ +
Sbjct: 371 ILAEMQDGMCKPNELTHCSLLHAYANGKEIGRMLALAEEICSGVIEPHAVLLKTLVLVNS 430

Query: 372 K--------------KVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTF 417
           K              K +  +P L T  ++I I+  +  V     +   +K++ +T    
Sbjct: 431 KCDLLLEAERAFLELKRKGFSPDLSTLNAMIAIYGRRQMVTKTNEILNFMKESGFTPSLA 490

Query: 418 VYNTLIKAYVKAKI--NDPNLLRRMILGGARPDAETYSLLKLA 458
            YN+L+  + +++       +L+ ++  G +PD  +Y+ +  A
Sbjct: 491 TYNSLMYMHSQSENFERSEEVLKEILAKGIKPDIISYNTVIFA 533



 Score = 60.1 bits (144), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 58/242 (23%), Positives = 109/242 (45%), Gaps = 13/242 (5%)

Query: 189 SDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYL 248
           +++ +   EP+  +Y  L TA      Y  A    + +E+        T +V++ +YG +
Sbjct: 22  NNLHKDGFEPDVYAYTSLITACVSNGRYREAVMVFKKMEEEGCKPTLITYNVILNVYGKM 81

Query: 249 AKGKDLERIWATVQELPNV----RSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKAT 304
             G    +I    + + N        +Y   I    R +    A  ++ +M+S+  +   
Sbjct: 82  --GMPWNKITGLFEGMKNAGILPDEYTYNTLITCCRRGSLYEEAAAVFEDMKSMGFVPDK 139

Query: 305 EQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALEL 364
             YN+++ VY K+  I +A  +L+EM +NGC P+ +TY  L     +  L+EE   A+EL
Sbjct: 140 VTYNTLLDVYGKSRRIKEAIEVLREMEVNGCSPSIVTYNSLISAYARDGLLEE---AMEL 196

Query: 365 GMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIK 424
             +++     R     + T  +++  F   G   +A  +FEE++ A        +N LIK
Sbjct: 197 KNQMVE----RGIKLDVFTYTAMLSGFVRTGKDESAMRVFEEMRTAGCKPNICTFNALIK 252

Query: 425 AY 426
            +
Sbjct: 253 MH 254



 Score = 55.5 bits (132), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 69/351 (19%), Positives = 136/351 (38%), Gaps = 79/351 (22%)

Query: 83  KLFCCIPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSS 142
           K+ CC+P    + + +N L+      G+        K+M+ +G       +N LI   S 
Sbjct: 271 KICCCVP----DIVTWNTLLAVFGQNGMDSEVSGVFKEMKRVGFVPERDTYNTLISAYSR 326

Query: 143 PGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVS 202
            G       + ++M    + P +ST++ ++   A     E   K+ ++M+    +PNE++
Sbjct: 327 CGSFDQAMAMYKRMLDTGITPDLSTYNAVLAALARGGLWEQSEKILAEMQDGMCKPNELT 386

Query: 203 YCILATAHA----VARLYTVAETYVEA-------------------------------LE 227
           +C L  A+A    + R+  +AE                                    L+
Sbjct: 387 HCSLLHAYANGKEIGRMLALAEEICSGVIEPHAVLLKTLVLVNSKCDLLLEAERAFLELK 446

Query: 228 KSMTGNNWSTLDVLIILYG-------------------------------YL-AKGKDLE 255
           +     + STL+ +I +YG                               Y+ ++ ++ E
Sbjct: 447 RKGFSPDLSTLNAMIAIYGRRQMVTKTNEILNFMKESGFTPSLATYNSLMYMHSQSENFE 506

Query: 256 RIWATVQEL------PNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNS 309
           R    ++E+      P++   SY   I A+ R  ++  A  ++ EM+    +     YN+
Sbjct: 507 RSEEVLKEILAKGIKPDI--ISYNTVIFAYCRNGRMKEASHIFSEMRESGLIPDVITYNT 564

Query: 310 VISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFK 360
            ++ Y  +   ++A  ++  M  +GCKPN  TY  +  G  K N  ++  K
Sbjct: 565 FVASYAADSMFEEAIDVVCYMIKHGCKPNQNTYNSVIDGYCKLNRRDDAIK 615


>gi|41152687|dbj|BAD08212.1| hypothetical protein [Oryza sativa Indica Group]
 gi|46091163|dbj|BAD13710.1| PPR protein [Oryza sativa Indica Group]
 gi|67906116|dbj|BAE00068.1| PPR protein [Oryza sativa Indica Group]
 gi|114437073|gb|ABI74690.1| fertility restorer [Oryza sativa Indica Group]
          Length = 683

 Score = 72.4 bits (176), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 103/466 (22%), Positives = 185/466 (39%), Gaps = 73/466 (15%)

Query: 8   EPVGSAFQSWMREGFPVHRGEIFHS---INRLRKLQLNKRALEVMEWVIRERPYRPKEL- 63
           E     F   +R G P    ++F     +N L     ++ ALE++  +  +    P ++ 
Sbjct: 34  EDARHVFDELLRRGIP----DVFSYNILLNGLCDENRSQEALELLHIMADDGGDCPPDVV 89

Query: 64  DYSYLLEFTIKNHGISQGEKLFCCIPKDYQ--NELL----------YNNLVIACLDKGVI 111
            YS     T+ N    +G+     + K Y   NE+L          YN+++ A      +
Sbjct: 90  SYS-----TVINGFFKEGD-----LDKTYSTYNEMLDQRISPNVVTYNSIIAALCKAQTV 139

Query: 112 KLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHIL 171
             ++E +  M   G     + +N ++    S G+ K     L++M++D V P V T++ L
Sbjct: 140 DKAMEVLTTMVKSGVMPDCMTYNSIVHGFCSSGQPKEAIVFLKKMRSDGVEPDVVTYNSL 199

Query: 172 MKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMT 231
           M     +       K++  M +  ++P   +Y  L   +A           ++ + ++  
Sbjct: 200 MDYLCKNGRCTEARKIFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGI 259

Query: 232 GNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEEL 291
             N     +L+  Y   AK + +E                   A+  F ++ Q       
Sbjct: 260 HPNHYVFSILVCAY---AKQEKVEE------------------AMLVFSKMRQ------- 291

Query: 292 WLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFK 351
               Q +     T  Y +VI + CK+G ++ A    ++M   G  P  I Y  L  G   
Sbjct: 292 ----QGLNPNAVT--YGAVIGILCKSGRVEDAMLYFEQMIDEGLSPGNIVYNSLIHGLCT 345

Query: 352 SNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKAN 411
            N  E   +A EL ++++  + +  +T +     SII+   ++G V  +E LF+ + +  
Sbjct: 346 CNKWE---RAEELILEMLD-RGICLNTIFFN---SIIDSHCKEGRVIESEKLFDLMVRIG 398

Query: 412 YTKYTFVYNTLIKAYVKAKIND--PNLLRRMILGGARPDAETYSLL 455
                  Y+TLI  Y  A   D    LL  M+  G +PD  TYS L
Sbjct: 399 VKPDIITYSTLIDGYCLAGKMDEATKLLASMVSVGMKPDCVTYSTL 444



 Score = 68.9 bits (167), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 79/343 (23%), Positives = 136/343 (39%), Gaps = 22/343 (6%)

Query: 96  LLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQ 155
           + YN++V      G  K ++ ++KKMR  G     + +N L+      GR      I   
Sbjct: 159 MTYNSIVHGFCSSGQPKEAIVFLKKMRSDGVEPDVVTYNSLMDYLCKNGRCTEARKIFDS 218

Query: 156 MKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARL 215
           M    + P ++T+  L++  A    +  +  +   M R+ + PN   + IL  A+A    
Sbjct: 219 MTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILVCAYAKQEK 278

Query: 216 YTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIW----ATVQELPNVRSKS 271
              A      + +     N  T   +I   G L K   +E         + E  +  +  
Sbjct: 279 VEEAMLVFSKMRQQGLNPNAVTYGAVI---GILCKSGRVEDAMLYFEQMIDEGLSPGNIV 335

Query: 272 YVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMS 331
           Y   I       +  RAEEL LEM        T  +NS+I  +CK G + ++  L   M 
Sbjct: 336 YNSLIHGLCTCNKWERAEELILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFDLMV 395

Query: 332 MNGCKPNAITYRHLALGCFKSNLVEEGFKAL----ELGMKLITTKKVRSSTPWLETTLSI 387
             G KP+ ITY  L  G   +  ++E  K L     +GMK           P   T  ++
Sbjct: 396 RIGVKPDIITYSTLIDGYCLAGKMDEATKLLASMVSVGMK-----------PDCVTYSTL 444

Query: 388 IEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAK 430
           I  + +   + +A  LF E++ +  +     YN +++   + +
Sbjct: 445 INGYCKISRMKDALVLFREMESSGVSPDIITYNIILQGLFQTR 487



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 53/204 (25%), Positives = 87/204 (42%), Gaps = 15/204 (7%)

Query: 265 PNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKAS 324
           P+V S S V  I  F +   + +    + EM   +       YNS+I+  CK   +DKA 
Sbjct: 86  PDVVSYSTV--INGFFKEGDLDKTYSTYNEMLDQRISPNVVTYNSIIAALCKAQTVDKAM 143

Query: 325 GLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSST--PWLE 382
            +L  M  +G  P+ +TY  +  G   S   +E          ++  KK+RS    P + 
Sbjct: 144 EVLTTMVKSGVMPDCMTYNSIVHGFCSSGQPKEA---------IVFLKKMRSDGVEPDVV 194

Query: 383 TTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVK--AKINDPNLLRRM 440
           T  S+++   + G    A  +F+ + K         Y TL++ Y    A +    LL  M
Sbjct: 195 TYNSLMDYLCKNGRCTEARKIFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLM 254

Query: 441 ILGGARPDAETYSLLKLAEQFQKK 464
           +  G  P+   +S+L  A   Q+K
Sbjct: 255 VRNGIHPNHYVFSILVCAYAKQEK 278



 Score = 38.5 bits (88), Expect = 7.9,   Method: Compositional matrix adjust.
 Identities = 47/250 (18%), Positives = 103/250 (41%), Gaps = 7/250 (2%)

Query: 94  NELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNIL 153
           N + +N+++ +   +G +  S +    M  +G     + ++ LI      G+      +L
Sbjct: 367 NTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMDEATKLL 426

Query: 154 RQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVA 213
             M +  + P   T+  L+        ++  + ++ +M+ S V P+ ++Y I+       
Sbjct: 427 ASMVSVGMKPDCVTYSTLINGYCKISRMKDALVLFREMESSGVSPDIITYNIILQGLFQT 486

Query: 214 RLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELP----NVRS 269
           R    A+     + KS      ST +  IIL+G L K K  +      Q L      + +
Sbjct: 487 RRTAAAKELYVGITKSGRQLELSTYN--IILHG-LCKNKLTDDALRMFQNLCLMDLKLEA 543

Query: 270 KSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKE 329
           +++ + I+A  ++ +   A++L++   S   +     Y  +       G +++   L   
Sbjct: 544 RTFNIMIDALLKVGRNDEAKDLFVAFSSNGLVPNYWTYRLMAENIIGQGLLEELDQLFLS 603

Query: 330 MSMNGCKPNA 339
           M  NGC  ++
Sbjct: 604 MEDNGCTVDS 613


>gi|326527525|dbj|BAK08037.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 460

 Score = 72.4 bits (176), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 70/299 (23%), Positives = 129/299 (43%), Gaps = 16/299 (5%)

Query: 163 PHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVA-ET 221
           P V T++ L+        ++    V   M+ + V P+ ++Y  L    A   L   A + 
Sbjct: 43  PDVVTYNTLLAAHCRASGLDAGFAVLHRMREAGVSPDAITYNSLIAGAARRGLTMRALDL 102

Query: 222 YVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQE---LPNVRSKSYVLAIEA 278
           + E L+  +  + WS   ++  L+      +D  R++A + E    P   + +Y   ++ 
Sbjct: 103 FDEMLQAGVAPDAWSYNALMHCLF-RSGHPEDAYRVFADMAEKGVAPC--ATTYNTLLDG 159

Query: 279 FGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPN 338
             R    + A  ++  +Q          YN++I+  CK+G +  A  +L+E+      PN
Sbjct: 160 LFRFGHATNAYRMFRYLQRTGLPVGIVTYNTMINGLCKSGKVGYARMVLRELGRTEHAPN 219

Query: 339 AITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVG 398
            +TY  +   CFK    ++G   LE  + L+    +    P+     ++I    +KG + 
Sbjct: 220 VVTYTTVMKCCFKYGRFDQG---LETFLSLLEGGYIPDLFPY----CTVISALVKKGRME 272

Query: 399 NAENLFEELKKANYTKYTFVYNTLIKAYVK-AKINDP-NLLRRMILGGARPDAETYSLL 455
            A    E + ++ +   +  YNTLI    K  K++D   LL  M  GG   D  T+S+L
Sbjct: 273 EANTYSELMIRSGFRLDSACYNTLIYLRCKEGKLDDAFELLSMMEEGGLESDEYTFSIL 331



 Score = 45.4 bits (106), Expect = 0.057,   Method: Compositional matrix adjust.
 Identities = 34/171 (19%), Positives = 71/171 (41%), Gaps = 11/171 (6%)

Query: 258 WATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKN 317
           WA  Q    + ++   + + A  R   ++RAE + ++   +        YN++++ +C+ 
Sbjct: 3   WARTQ----LSTRLMNVCLAALCRGGGIARAESVLVDAIRLGMPPDVVTYNTLLAAHCRA 58

Query: 318 GFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSS 377
             +D    +L  M   G  P+AITY  L  G  +  L     +AL+L  +++        
Sbjct: 59  SGLDAGFAVLHRMREAGVSPDAITYNSLIAGAARRGLT---MRALDLFDEMLQA----GV 111

Query: 378 TPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVK 428
            P   +  +++      G   +A  +F ++ +         YNTL+    +
Sbjct: 112 APDAWSYNALMHCLFRSGHPEDAYRVFADMAEKGVAPCATTYNTLLDGLFR 162



 Score = 39.7 bits (91), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 56/271 (20%), Positives = 105/271 (38%), Gaps = 7/271 (2%)

Query: 98  YNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMK 157
           YN L+ A      +      + +MR  G S   + +N LI   +  G      ++  +M 
Sbjct: 48  YNTLLAAHCRASGLDAGFAVLHRMREAGVSPDAITYNSLIAGAARRGLTMRALDLFDEML 107

Query: 158 ADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYT 217
              VAP   +++ LM       + E   +V++DM    V P   +Y  L          T
Sbjct: 108 QAGVAPDAWSYNALMHCLFRSGHPEDAYRVFADMAEKGVAPCATTYNTLLDGLFRFGHAT 167

Query: 218 VAETYVEALEKSMTGNNWSTLDVLI---ILYGYLAKGKDLERIWATVQELPNVRSKSYVL 274
            A      L+++       T + +I      G +   + + R     +  PNV + + V+
Sbjct: 168 NAYRMFRYLQRTGLPVGIVTYNTMINGLCKSGKVGYARMVLRELGRTEHAPNVVTYTTVM 227

Query: 275 -AIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMN 333
                +GR  Q     E +L +     +     Y +VIS   K G +++A+   + M  +
Sbjct: 228 KCCFKYGRFDQ---GLETFLSLLEGGYIPDLFPYCTVISALVKKGRMEEANTYSELMIRS 284

Query: 334 GCKPNAITYRHLALGCFKSNLVEEGFKALEL 364
           G + ++  Y  L     K   +++ F+ L +
Sbjct: 285 GFRLDSACYNTLIYLRCKEGKLDDAFELLSM 315


>gi|410110095|gb|AFV61127.1| pentatricopeptide repeat-containing protein 123, partial [Lantana
           montevidensis]
          Length = 418

 Score = 72.4 bits (176), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 74/322 (22%), Positives = 148/322 (45%), Gaps = 22/322 (6%)

Query: 98  YNNLVIACLDKGVIKLSLEYMKKM---RVLGHSISYLVFNRLIILNSSPGRRKTIPNILR 154
           Y+ L+     +G+   +L +++KM   RV G  + Y   + LI L+          +I  
Sbjct: 2   YSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLY---SNLIELSRKLCDYSKAISIFS 58

Query: 155 QMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVAR 214
           ++K     P +  ++ ++ +            +  +MK + V PN  SY  L T +   +
Sbjct: 59  RLKRSGFTPDLVAYNAMINVFGKAKLFREARSLIGEMKAAGVMPNTTSYSTLLTMYVENK 118

Query: 215 LYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQEL---PNVRSKS 271
            +  A +    + +     + +T +++I +YG L   K+ ++++  ++++   PNV S +
Sbjct: 119 KFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYN 178

Query: 272 YVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMS 331
            +L +  +G       A  L+  MQ     +    YNS++ +Y K    +KA+ L++EM 
Sbjct: 179 TLLRV--YGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQ 236

Query: 332 MNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTL--SIIE 389
             G +PN+ITY         S ++    K  +L    +  +K+RSS   ++  L  ++I 
Sbjct: 237 SRGIEPNSITY---------STIISIWGKVGKLDRAAMLFQKLRSSGXEIDQILFQTMIV 287

Query: 390 IFAEKGDVGNAENLFEELKKAN 411
            +   G V +A+ L  ELK+ +
Sbjct: 288 AYERAGLVAHAKRLLHELKRPD 309



 Score = 40.8 bits (94), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 34/127 (26%), Positives = 57/127 (44%), Gaps = 11/127 (8%)

Query: 307 YNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGM 366
           YN++I+V+ K     +A  L+ EM   G  PN  +Y  L        +  E  K LE   
Sbjct: 72  YNAMINVFGKAKLFREARSLIGEMKAAGVMPNTTSYSTLL------TMYVENKKFLE--- 122

Query: 367 KLITTKKVRSSTPWLETTLS--IIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIK 424
            L    ++R     L+ T    +I+++ + G    A+ LF  ++K         YNTL++
Sbjct: 123 ALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTLLR 182

Query: 425 AYVKAKI 431
            Y  A++
Sbjct: 183 VYGDAEL 189


>gi|224108788|ref|XP_002314968.1| predicted protein [Populus trichocarpa]
 gi|222864008|gb|EEF01139.1| predicted protein [Populus trichocarpa]
          Length = 662

 Score = 72.4 bits (176), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 79/404 (19%), Positives = 167/404 (41%), Gaps = 37/404 (9%)

Query: 65  YSYLLEFTIKNHGISQGEKLFC------CIPKDYQNELLYNNLVIACLDKGVIKLSLEYM 118
           Y+ LL+   KN  +    KL        CIP    + + Y  +V +    G ++ + E  
Sbjct: 181 YNMLLKALCKNDRVDAARKLLAEMSYKGCIP----DAVSYTTVVSSMCRLGKVEEARELS 236

Query: 119 KKMRVLGHSISYL-VFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEAN 177
            +++      S++ V+N LI       + + +  +  +M  + + P V T+  ++   + 
Sbjct: 237 MRIK------SFVPVYNALINGFCREHKMEEVFELFNEMAVEGIDPDVITYSTVINTLSE 290

Query: 178 DHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVA-RLYTVAETYVEALEKSMTGNNWS 236
             N+E  + V + M      PN  ++  L   + +  RL    + +   +++   G+  +
Sbjct: 291 MGNVEMALAVLAKMFLRGCSPNVHTFTSLMKGYFMGGRLCEALDLWNRMIQE---GSEPN 347

Query: 237 TLDVLIILYGYLAKGKDLERIWATVQE-----LPNVRSKSYVLAIEAFGRIAQVSRAEEL 291
           T+    +++G  + GK +E +  + +       PN    +Y   I+ F +   +  A E+
Sbjct: 348 TVAYNTLIHGLCSYGKMVEAVSVSQKMERNGVFPN--ETTYSTLIDGFAKAGDLVGASEI 405

Query: 292 WLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFK 351
           W +M +   L     Y  ++ V C+N   + A  L++ M+   C PN IT+     G   
Sbjct: 406 WNKMITNGCLPNVVVYTCMVDVLCRNSMFNHALHLIENMANGNCPPNTITFNTFIKGLCC 465

Query: 352 SNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKAN 411
           S          E  MK++   +     P + T   +++          A  +  E+++  
Sbjct: 466 SG-------KTEWAMKVLNQMRQYGCAPNVTTYNEVLDGLFNAKRTREALQIVGEIEEME 518

Query: 412 YTKYTFVYNTLIKAYVKAKI--NDPNLLRRMILGGARPDAETYS 453
                  YNT++  +  A +      +  ++++GG +PD+ TY+
Sbjct: 519 IKSNLVTYNTILSGFCHAGMFKGALQIAGKLLVGGTKPDSITYN 562



 Score = 62.8 bits (151), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 92/420 (21%), Positives = 165/420 (39%), Gaps = 54/420 (12%)

Query: 67  YLLEFTIKNHGISQGEKLFCCIPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGH 126
           YLL+  +K  GIS  E LF  +   Y+               G+ + +L+   ++   G 
Sbjct: 94  YLLQL-MKLEGISCNEDLFVIVINAYRR-------------AGLAEQALKTFYRIGEFGC 139

Query: 127 SISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMK 186
             S  ++N ++    S  + + I  I   MK D +  +V T+++L+K    +  ++   K
Sbjct: 140 KPSVKIYNHVLDALLSENKFQMINGIYNNMKRDGIELNVYTYNMLLKALCKNDRVDAARK 199

Query: 187 VYSDMKRSEVEPNEVSY-------CILATAHAVARLYTVAETYVEALEKSMTG-NNWSTL 238
           + ++M      P+ VSY       C L        L    +++V      + G      +
Sbjct: 200 LLAEMSYKGCIPDAVSYTTVVSSMCRLGKVEEARELSMRIKSFVPVYNALINGFCREHKM 259

Query: 239 DVLIILYGYLA-KGKDLERIW-----ATVQELPNVRSKSYVLA----------IEAFGRI 282
           + +  L+  +A +G D + I       T+ E+ NV     VLA          +  F  +
Sbjct: 260 EEVFELFNEMAVEGIDPDVITYSTVINTLSEMGNVEMALAVLAKMFLRGCSPNVHTFTSL 319

Query: 283 -------AQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGC 335
                   ++  A +LW  M        T  YN++I   C  G + +A  + ++M  NG 
Sbjct: 320 MKGYFMGGRLCEALDLWNRMIQEGSEPNTVAYNTLIHGLCSYGKMVEAVSVSQKMERNGV 379

Query: 336 KPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKG 395
            PN  TY  L  G  K+    +   A E+  K+IT        P +     ++++     
Sbjct: 380 FPNETTYSTLIDGFAKAG---DLVGASEIWNKMIT----NGCLPNVVVYTCMVDVLCRNS 432

Query: 396 DVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKIND--PNLLRRMILGGARPDAETYS 453
              +A +L E +   N    T  +NT IK    +   +    +L +M   G  P+  TY+
Sbjct: 433 MFNHALHLIENMANGNCPPNTITFNTFIKGLCCSGKTEWAMKVLNQMRQYGCAPNVTTYN 492


>gi|356551942|ref|XP_003544331.1| PREDICTED: pentatricopeptide repeat-containing protein At1g12300,
           mitochondrial-like [Glycine max]
          Length = 545

 Score = 72.4 bits (176), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 86/405 (21%), Positives = 163/405 (40%), Gaps = 50/405 (12%)

Query: 92  YQ-NELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIP 150
           YQ N +  N L+     +G +K +L +  K+   G  +S + +  LI      G  +   
Sbjct: 124 YQPNTITLNTLMKGLCLEGKVKEALRFHDKVLAQGFRLSGISYGILINGVCKIGETRAAI 183

Query: 151 NILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAH 210
            +LR+++   + P+V  + +++     D  ++    +Y++M    + P+ V+Y IL +  
Sbjct: 184 RLLRRIERWSIRPNVVIYSMIIDRLCKDTLVDEAYDLYTEMVGKGISPDVVTYSILVSGF 243

Query: 211 AVA--------------------RLYT--------VAETYVEALEKSMTGNNWSTLDVLI 242
            +                      +YT          E  V+  E  +     + +++ +
Sbjct: 244 CIVGQLNRAIDLLNEMVLENINPDIYTYTILVDALCKEGKVKEAENVLAVMVKACVNLDV 303

Query: 243 ILYGYLAKG-------KDLERIWATVQEL---PNVRSKSYVLAIEAFGRIAQVSRAEELW 292
           ++Y  L  G        + +R++ T+ ++   P+V    Y + I    +I +V  A  L+
Sbjct: 304 VVYSTLMDGYCLVNEVNNAKRVFYTMTQMGVTPDVH--CYSIMINGLCKIKRVDEALNLF 361

Query: 293 LEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKS 352
            E+     +  T  Y S+I   CK+G I     L  EM   G  P+ ITY +L       
Sbjct: 362 EEIHQKNMVPDTVTYTSLIDCLCKSGRISYVWDLFDEMLDRGQPPDVITYNNLI-----D 416

Query: 353 NLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANY 412
            L + G   L+  + L    K ++  P + T   +++   + G + NA   F++L    Y
Sbjct: 417 ALCKNG--HLDRAIALFNKMKDQAIRPNVYTFTILLDGLCKVGRLKNALEFFQDLLTKGY 474

Query: 413 TKYTFVYNTLIKAYVKAKINDPNLL--RRMILGGARPDAETYSLL 455
                 Y  +I    K  + D  L    RM   G   DA T+ ++
Sbjct: 475 CLNVRTYTVMINGLCKEGLLDEALALQSRMEDNGCISDAVTFEIM 519



 Score = 62.8 bits (151), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 72/302 (23%), Positives = 127/302 (42%), Gaps = 20/302 (6%)

Query: 162 APHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAET 221
            PH   F+ ++    N       + +Y  M+ SEVEP+  +  I+           +A +
Sbjct: 55  TPHTFHFNKILISLVNVKRYPTAISLYKQMELSEVEPDYFTLNIIINCFCHFGQVVLAFS 114

Query: 222 YVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPN---VRSKSYVLAIEA 278
            V  + K     N  TL+ L  + G   +GK  E +    + L     +   SY + I  
Sbjct: 115 GVSKILKLGYQPNTITLNTL--MKGLCLEGKVKEALRFHDKVLAQGFRLSGISYGILING 172

Query: 279 FGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPN 338
             +I +   A  L   ++          Y+ +I   CK+  +D+A  L  EM   G  P+
Sbjct: 173 VCKIGETRAAIRLLRRIERWSIRPNVVIYSMIIDRLCKDTLVDEAYDLYTEMVGKGISPD 232

Query: 339 AITYRHLALG-CFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDV 397
            +TY  L  G C    +V +  +A++L  +++    + +  P + T   +++   ++G V
Sbjct: 233 VVTYSILVSGFC----IVGQLNRAIDLLNEMV----LENINPDIYTYTILVDALCKEGKV 284

Query: 398 GNAENLFEELKKANYTKYTFVYNTLIKAYVKAKINDPNLLRR----MILGGARPDAETYS 453
             AEN+   + KA       VY+TL+  Y    +N+ N  +R    M   G  PD   YS
Sbjct: 285 KEAENVLAVMVKACVNLDVVVYSTLMDGY--CLVNEVNNAKRVFYTMTQMGVTPDVHCYS 342

Query: 454 LL 455
           ++
Sbjct: 343 IM 344


>gi|218191892|gb|EEC74319.1| hypothetical protein OsI_09597 [Oryza sativa Indica Group]
          Length = 1167

 Score = 72.4 bits (176), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 85/404 (21%), Positives = 165/404 (40%), Gaps = 19/404 (4%)

Query: 33  INRLRKLQLNKRALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQGEKLFCCIPKD- 91
           +  L K+    RA  +++ ++R+  +RP  + Y+ ++E   ++H      +L   +    
Sbjct: 264 VRGLCKMGQMDRASLLLKQMVRDS-HRPDTITYNLIIEGHFRHHNKKDAFRLLSEMENAG 322

Query: 92  -YQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIP 150
              N   Y+ ++      G  + + + +++M   G   +  V+  LI      G      
Sbjct: 323 ISPNVYTYSIMIHGLCQSGEPEKASDLLEEMTTKGLKPNAFVYAPLISGYCREGNVSLAC 382

Query: 151 NILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAH 210
            I  +M    V P +  ++ L+   +    +E   K ++ M+   + PNE +Y  L   +
Sbjct: 383 EIFDKMTKVNVLPDLYCYNSLIFGLSKVGRVEESTKYFAQMQERGLLPNEFTYSGLIHGY 442

Query: 211 AVARLYTVAETYVE-ALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPN--- 266
                   AE  V+  L+  +  N+   +D+L   +    K  D+E++ +T + + +   
Sbjct: 443 LKNGDLESAEQLVQRMLDTGLKPNDVIYIDLLESYF----KSDDIEKVSSTFKSMLDQGV 498

Query: 267 -VRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASG 325
            + ++ Y + I        +  A  +  E++    +     Y+S+IS  CK    +KA G
Sbjct: 499 MLDNRIYGILIHNLSSSGNMEAAFRVLSEIEKNGSVPDVHVYSSLISGLCKTADREKAFG 558

Query: 326 LLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTL 385
           +L EMS  G  PN + Y  L  G  KS         +     +  +   +   P   T  
Sbjct: 559 ILDEMSKKGVDPNIVCYNALIDGLCKSG-------DISYARNVFNSILAKGLVPNCVTYT 611

Query: 386 SIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKA 429
           S+I+   + GD+ NA  L+ E+     T   FVY+ L      A
Sbjct: 612 SLIDGSCKVGDISNAFYLYNEMLATGITPDAFVYSVLTTGCSSA 655



 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 81/397 (20%), Positives = 160/397 (40%), Gaps = 39/397 (9%)

Query: 94  NELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNIL 153
           N ++Y NL+   + +G    + + +K+M   G   + + ++ L+      G+      +L
Sbjct: 221 NVVVYANLIDGFMREGNADEAFKMIKEMVAAGVQPNKITYDNLVRGLCKMGQMDRASLLL 280

Query: 154 RQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVA 213
           +QM  D   P   T++++++     HN +   ++ S+M+ + + PN  +Y I+      +
Sbjct: 281 KQMVRDSHRPDTITYNLIIEGHFRHHNKKDAFRLLSEMENAGISPNVYTYSIMIHGLCQS 340

Query: 214 RLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGK-----DLERIWATVQELPNVR 268
                A   +E  E +  G   +      ++ GY  +G      ++      V  LP++ 
Sbjct: 341 GEPEKASDLLE--EMTTKGLKPNAFVYAPLISGYCREGNVSLACEIFDKMTKVNVLPDLY 398

Query: 269 SKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLK 328
              Y   I    ++ +V  + + + +MQ    L     Y+ +I  Y KNG ++ A  L++
Sbjct: 399 --CYNSLIFGLSKVGRVEESTKYFAQMQERGLLPNEFTYSGLIHGYLKNGDLESAEQLVQ 456

Query: 329 EMSMNGCKPNAITYRHLALGCFKSNLVEE---GFKA------------------------ 361
            M   G KPN + Y  L    FKS+ +E+    FK+                        
Sbjct: 457 RMLDTGLKPNDVIYIDLLESYFKSDDIEKVSSTFKSMLDQGVMLDNRIYGILIHNLSSSG 516

Query: 362 -LELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYN 420
            +E   ++++  +   S P +    S+I    +  D   A  + +E+ K         YN
Sbjct: 517 NMEAAFRVLSEIEKNGSVPDVHVYSSLISGLCKTADREKAFGILDEMSKKGVDPNIVCYN 576

Query: 421 TLIKAYVKAKIND--PNLLRRMILGGARPDAETYSLL 455
            LI    K+       N+   ++  G  P+  TY+ L
Sbjct: 577 ALIDGLCKSGDISYARNVFNSILAKGLVPNCVTYTSL 613



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 98/444 (22%), Positives = 168/444 (37%), Gaps = 64/444 (14%)

Query: 34  NRLRKLQLNKRALEVMEWVIRE----RPYRPKELDYSYLLEFTIKNHGISQGEKLF---- 85
           N L K  L   A+ ++ W +RE        P    YS L+E   K       +K+     
Sbjct: 86  NALLKDLLRADAMALL-WKVREFMVGAGISPDVYTYSTLIEAYCKVREFDTAKKVLVEMR 144

Query: 86  ---CCIPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSS 142
              C +     N + YN L+      G ++ +  + K M   G       +  LI     
Sbjct: 145 ERGCGL-----NTVTYNVLIAGLCRSGAVEEAFGFKKDMEDYGLVPDGFTYGALINGLCK 199

Query: 143 PGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVS 202
             R      +L +M   ++ P+V  +  L+     + N +   K+  +M  + V+PN+++
Sbjct: 200 SRRSNEAKALLDEMSCAELKPNVVVYANLIDGFMREGNADEAFKMIKEMVAAGVQPNKIT 259

Query: 203 YCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQ 262
           Y                +  V  L K                 G + +   L +      
Sbjct: 260 Y----------------DNLVRGLCK----------------MGQMDRASLLLKQMVRDS 287

Query: 263 ELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDK 322
             P+  + +Y L IE   R      A  L  EM++         Y+ +I   C++G  +K
Sbjct: 288 HRPD--TITYNLIIEGHFRHHNKKDAFRLLSEMENAGISPNVYTYSIMIHGLCQSGEPEK 345

Query: 323 ASGLLKEMSMNGCKPNAITYRHLALG-CFKSNLVEEGFKALELGMKLITTKKVRSSTPWL 381
           AS LL+EM+  G KPNA  Y  L  G C + N        + L  ++       +  P L
Sbjct: 346 ASDLLEEMTTKGLKPNAFVYAPLISGYCREGN--------VSLACEIFDKMTKVNVLPDL 397

Query: 382 ETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKI--NDPNLLRR 439
               S+I   ++ G V  +   F ++++       F Y+ LI  Y+K     +   L++R
Sbjct: 398 YCYNSLIFGLSKVGRVEESTKYFAQMQERGLLPNEFTYSGLIHGYLKNGDLESAEQLVQR 457

Query: 440 MILGGARPDAETYSLLKLAEQFQK 463
           M+  G +P+   Y  + L E + K
Sbjct: 458 MLDTGLKPNDVIY--IDLLESYFK 479



 Score = 53.5 bits (127), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 82/381 (21%), Positives = 140/381 (36%), Gaps = 67/381 (17%)

Query: 94  NELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNIL 153
           N  +Y  L+     +G + L+ E   KM  +        +N LI   S  GR +      
Sbjct: 361 NAFVYAPLISGYCREGNVSLACEIFDKMTKVNVLPDLYCYNSLIFGLSKVGRVEESTKYF 420

Query: 154 RQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYC-ILATAHAV 212
            QM+   + P+  T+  L+     + ++E   ++   M  + ++PN+V Y  +L +    
Sbjct: 421 AQMQERGLLPNEFTYSGLIHGYLKNGDLESAEQLVQRMLDTGLKPNDVIYIDLLESYFKS 480

Query: 213 ARLYTVAETYVEALEK----------------SMTGN-------------NWSTLDVLII 243
             +  V+ T+   L++                S +GN             N S  DV + 
Sbjct: 481 DDIEKVSSTFKSMLDQGVMLDNRIYGILIHNLSSSGNMEAAFRVLSEIEKNGSVPDVHVY 540

Query: 244 --LYGYLAKGKDLERIWATVQEL------PNVRSKSYVLAIEAFGRIAQVSRAEELWLEM 295
             L   L K  D E+ +  + E+      PN+    Y   I+   +   +S A  ++  +
Sbjct: 541 SSLISGLCKTADREKAFGILDEMSKKGVDPNI--VCYNALIDGLCKSGDISYARNVFNSI 598

Query: 296 QSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSN-- 353
            +   +     Y S+I   CK G I  A  L  EM   G  P+A  Y  L  GC  +   
Sbjct: 599 LAKGLVPNCVTYTSLIDGSCKVGDISNAFYLYNEMLATGITPDAFVYSVLTTGCSSAGDL 658

Query: 354 -----LVEEGF--------------------KALELGMKLITTKKVRSSTPWLETTLSII 388
                L+EE F                      ++  +KL+     R   P   T  +II
Sbjct: 659 EQAMFLIEEMFLRGHASISSFNNLVDGFCKRGKMQETLKLLHVIMGRGLVPNALTIENII 718

Query: 389 EIFAEKGDVGNAENLFEELKK 409
              +E G +     +F EL++
Sbjct: 719 SGLSEAGKLSEVHTIFVELQQ 739



 Score = 42.0 bits (97), Expect = 0.62,   Method: Compositional matrix adjust.
 Identities = 60/306 (19%), Positives = 121/306 (39%), Gaps = 18/306 (5%)

Query: 53  IRERPYRPKELDYSYLLEFTIKNHGISQGEKLFCCIPKD--YQNELLYNNLVIACLDKGV 110
           ++ER   P E  YS L+   +KN  +   E+L   +       N+++Y +L+ +      
Sbjct: 423 MQERGLLPNEFTYSGLIHGYLKNGDLESAEQLVQRMLDTGLKPNDVIYIDLLESYFKSDD 482

Query: 111 IKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHI 170
           I+      K M   G  +   ++  LI   SS G  +    +L +++ +   P V  +  
Sbjct: 483 IEKVSSTFKSMLDQGVMLDNRIYGILIHNLSSSGNMEAAFRVLSEIEKNGSVPDVHVYSS 542

Query: 171 LMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEA-LEKS 229
           L+       + E    +  +M +  V+PN V Y  L      +   + A     + L K 
Sbjct: 543 LISGLCKTADREKAFGILDEMSKKGVDPNIVCYNALIDGLCKSGDISYARNVFNSILAKG 602

Query: 230 MTGNNWSTLDVLIILYGYLAKGK----DLERIWATVQEL--PNVRSKSYVLAIEAFGRIA 283
           +  N         + Y  L  G     D+   +    E+    +   ++V ++   G  +
Sbjct: 603 LVPN--------CVTYTSLIDGSCKVGDISNAFYLYNEMLATGITPDAFVYSVLTTGCSS 654

Query: 284 QVSRAEELWL-EMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITY 342
                + ++L E   ++   +   +N+++  +CK G + +   LL  +   G  PNA+T 
Sbjct: 655 AGDLEQAMFLIEEMFLRGHASISSFNNLVDGFCKRGKMQETLKLLHVIMGRGLVPNALTI 714

Query: 343 RHLALG 348
            ++  G
Sbjct: 715 ENIISG 720


>gi|15219527|ref|NP_177512.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75169780|sp|Q9C9U0.1|PP118_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g73710
 gi|12324197|gb|AAG52063.1|AC012679_1 hypothetical protein; 49134-52109 [Arabidopsis thaliana]
 gi|332197379|gb|AEE35500.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 991

 Score = 72.4 bits (176), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 75/344 (21%), Positives = 146/344 (42%), Gaps = 26/344 (7%)

Query: 98  YNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMK 157
           +N L+      G +  +     +M   G  I  + FN +I    + G      ++L++M+
Sbjct: 308 FNTLIDLYGKAGRLNDAANLFSEMLKSGVPIDTVTFNTMIHTCGTHGHLSEAESLLKKME 367

Query: 158 ADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYT 217
              ++P   T++IL+ + A+  +IE  ++ Y  +++  + P+ V++   A  H + +   
Sbjct: 368 EKGISPDTKTYNILLSLHADAGDIEAALEYYRKIRKVGLFPDTVTH--RAVLHILCQRKM 425

Query: 218 VAETYVEALEKSMTGNNWSTLD--VLIILYGYLAKGKDLERIWATVQELPNVRSKSYVLA 275
           VAE  VEA+   M  N+    +  V +I+  Y+ +G     +    + L        VL+
Sbjct: 426 VAE--VEAVIAEMDRNSIRIDEHSVPVIMQMYVNEG-----LVVQAKALFERFQLDCVLS 478

Query: 276 IEAFGRIAQVSRAEELWLEMQSV--------KQLKATEQYNSVISVYCKNGFIDKASGLL 327
                 +  V   + LW+E ++V         Q     +YN +I  Y K    +KA  L 
Sbjct: 479 STTLAAVIDVYAEKGLWVEAETVFYGKRNMSGQRNDVLEYNVMIKAYGKAKLHEKALSLF 538

Query: 328 KEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSI 387
           K M   G  P+  TY  L       +LV+E         +++         P  +T  ++
Sbjct: 539 KGMKNQGTWPDECTYNSLFQMLAGVDLVDE-------AQRILAEMLDSGCKPGCKTYAAM 591

Query: 388 IEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKI 431
           I  +   G + +A +L+E ++K        VY +LI  + ++ +
Sbjct: 592 IASYVRLGLLSDAVDLYEAMEKTGVKPNEVVYGSLINGFAESGM 635



 Score = 53.1 bits (126), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 71/355 (20%), Positives = 152/355 (42%), Gaps = 47/355 (13%)

Query: 94  NELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNIL 153
           + + +N ++  C   G +  +   +KKM   G S     +N L+ L++  G  +      
Sbjct: 339 DTVTFNTMIHTCGTHGHLSEAESLLKKMEEKGISPDTKTYNILLSLHADAGDIEAALEYY 398

Query: 154 RQMKADKVAP----HVSTFHILMK------------------IEANDHNIEGLMKVYSD- 190
           R+++   + P    H +  HIL +                  I  ++H++  +M++Y + 
Sbjct: 399 RKIRKVGLFPDTVTHRAVLHILCQRKMVAEVEAVIAEMDRNSIRIDEHSVPVIMQMYVNE 458

Query: 191 ----MKRSEVEPNEVSYCILA--TAHAVARLYTVAETYVEAL-----EKSMTGNNWSTLD 239
                 ++  E  ++  C+L+  T  AV  +Y     +VEA      +++M+G     L+
Sbjct: 459 GLVVQAKALFERFQLD-CVLSSTTLAAVIDVYAEKGLWVEAETVFYGKRNMSGQRNDVLE 517

Query: 240 VLIILYGYLAKGKDLERIWATVQELPNVRS----KSYVLAIEAFGRIAQVSRAEELWLEM 295
             +++  Y  K K  E+  +  + + N  +     +Y    +    +  V  A+ +  EM
Sbjct: 518 YNVMIKAY-GKAKLHEKALSLFKGMKNQGTWPDECTYNSLFQMLAGVDLVDEAQRILAEM 576

Query: 296 QSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLV 355
                    + Y ++I+ Y + G +  A  L + M   G KPN + Y  L  G  +S +V
Sbjct: 577 LDSGCKPGCKTYAAMIASYVRLGLLSDAVDLYEAMEKTGVKPNEVVYGSLINGFAESGMV 636

Query: 356 EEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKA 410
           EE  +      +++    V+S+   L    S+I+ +++ G +  A  +++++K +
Sbjct: 637 EEAIQYF----RMMEEHGVQSNHIVLT---SLIKAYSKVGCLEEARRVYDKMKDS 684



 Score = 48.9 bits (115), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 61/253 (24%), Positives = 112/253 (44%), Gaps = 35/253 (13%)

Query: 236 STLDVLIILYGYLAKGKDLERIWATV--QELPNVRSKSYVLAIEAFGRIAQVSRAEELWL 293
           ST + LI LYG   +  D   +++ +    +P + + ++   I   G    +S AE L  
Sbjct: 306 STFNTLIDLYGKAGRLNDAANLFSEMLKSGVP-IDTVTFNTMIHTCGTHGHLSEAESLLK 364

Query: 294 EMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSN 353
           +M+       T+ YN ++S++   G I+ A    +++   G  P+ +T+R +     +  
Sbjct: 365 KMEEKGISPDTKTYNILLSLHADAGDIEAALEYYRKIRKVGLFPDTVTHRAVLHILCQRK 424

Query: 354 LVEEGFKALELGMKLITTKKVRSSTPWL---------------------------ETTLS 386
           +V E  +A+   M   + +    S P +                            TTL+
Sbjct: 425 MVAE-VEAVIAEMDRNSIRIDEHSVPVIMQMYVNEGLVVQAKALFERFQLDCVLSSTTLA 483

Query: 387 -IIEIFAEKGDVGNAENLFEELKKANYTKYTFV-YNTLIKAYVKAKINDP--NLLRRMIL 442
            +I+++AEKG    AE +F   +  +  +   + YN +IKAY KAK+++   +L + M  
Sbjct: 484 AVIDVYAEKGLWVEAETVFYGKRNMSGQRNDVLEYNVMIKAYGKAKLHEKALSLFKGMKN 543

Query: 443 GGARPDAETYSLL 455
            G  PD  TY+ L
Sbjct: 544 QGTWPDECTYNSL 556



 Score = 43.5 bits (101), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 52/265 (19%), Positives = 117/265 (44%), Gaps = 8/265 (3%)

Query: 93  QNELLYNNLVIACLDKGVI-KLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPN 151
           +N++L  N++I    K  + + +L   K M+  G       +N L  + +          
Sbjct: 512 RNDVLEYNVMIKAYGKAKLHEKALSLFKGMKNQGTWPDECTYNSLFQMLAGVDLVDEAQR 571

Query: 152 ILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHA 211
           IL +M      P   T+  ++        +   + +Y  M+++ V+PNEV Y  L    A
Sbjct: 572 ILAEMLDSGCKPGCKTYAAMIASYVRLGLLSDAVDLYEAMEKTGVKPNEVVYGSLINGFA 631

Query: 212 VARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQEL---PNVR 268
            + +   A  Y   +E+    +N   L  LI  Y  +   ++  R++  +++    P+V 
Sbjct: 632 ESGMVEEAIQYFRMMEEHGVQSNHIVLTSLIKAYSKVGCLEEARRVYDKMKDSEGGPDVA 691

Query: 269 SKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLK 328
           + + +L++ A   +  VS AE ++  ++  K       + +++ +Y   G +D+A  + +
Sbjct: 692 ASNSMLSLCA--DLGIVSEAESIFNALRE-KGTCDVISFATMMYLYKGMGMLDEAIEVAE 748

Query: 329 EMSMNGCKPNAITYRHLALGCFKSN 353
           EM  +G   +  ++  + + C+ ++
Sbjct: 749 EMRESGLLSDCTSFNQV-MACYAAD 772


>gi|225438599|ref|XP_002276540.1| PREDICTED: pentatricopeptide repeat-containing protein At4g39620,
           chloroplastic [Vitis vinifera]
 gi|296082481|emb|CBI21486.3| unnamed protein product [Vitis vinifera]
          Length = 489

 Score = 72.4 bits (176), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 75/317 (23%), Positives = 140/317 (44%), Gaps = 22/317 (6%)

Query: 44  RALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQGEKLFC------CIPKDYQNELL 97
           + LEV  W+ ++R Y      YS L+    K         LF       C P    +  +
Sbjct: 116 QCLEVFRWMQKQRWYIADNGVYSKLISVMGKKGQTRMAMWLFSEMRNSGCRP----DTSV 171

Query: 98  YNNLVIACL-----DKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNI 152
           YN L+ A L      K +IK +L Y  KM+ +      +V   +++   +  +     N 
Sbjct: 172 YNALITAHLHSRDKSKALIK-ALGYFDKMKGMERCKPNIVTYNILLRAFAQAQNVNQANA 230

Query: 153 L-RQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHA 211
           L +++    V+P + TF+ +M     +  I+ +  V S MK ++ +P+ +++ +L  ++ 
Sbjct: 231 LFKELNESIVSPDIFTFNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNVLIDSYG 290

Query: 212 VARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQEL---PNVR 268
             + +   E   ++L +S       T + +I  YG     +  E ++  + ++   PN  
Sbjct: 291 RRQEFDKMEQVFKSLLRSKEKPTLPTFNSMITNYGKARLKEKAENVFKKMTDMGYAPNF- 349

Query: 269 SKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLK 328
             +Y   I  +G    +SRA E++ EM + K+       N+++ VYC NG   +A  LL+
Sbjct: 350 -ITYESLIMMYGFCDCISRAREIFDEMMASKKEMKVSTLNAMLEVYCMNGLPMEADLLLE 408

Query: 329 EMSMNGCKPNAITYRHL 345
               N   P + TY+ L
Sbjct: 409 RARKNRPFPGSSTYKLL 425



 Score = 69.3 bits (168), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 74/308 (24%), Positives = 145/308 (47%), Gaps = 21/308 (6%)

Query: 132 VFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIE---GLMKV- 187
           V+++LI +    G+ +    +  +M+     P  S ++ L  I A+ H+ +    L+K  
Sbjct: 136 VYSKLISVMGKKGQTRMAMWLFSEMRNSGCRPDTSVYNAL--ITAHLHSRDKSKALIKAL 193

Query: 188 --YSDMKRSE-VEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIIL 244
             +  MK  E  +PN V+Y IL  A A A+    A    + L +S+   +  T + ++  
Sbjct: 194 GYFDKMKGMERCKPNIVTYNILLRAFAQAQNVNQANALFKELNESIVSPDIFTFNGVMDA 253

Query: 245 YGYLAKGKDLERIWATV---QELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQL 301
           YG     K++E + + +   Q  P++   ++ + I+++GR  +  + E+++  +   K+ 
Sbjct: 254 YGKNGMIKEMESVLSRMKSNQCKPDI--ITFNVLIDSYGRRQEFDKMEQVFKSLLRSKEK 311

Query: 302 KATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKA 361
                +NS+I+ Y K    +KA  + K+M+  G  PN ITY  L +     + +    +A
Sbjct: 312 PTLPTFNSMITNYGKARLKEKAENVFKKMTDMGYAPNFITYESLIMMYGFCDCIS---RA 368

Query: 362 LELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNT 421
            E+  +++ +KK       + T  +++E++   G    A+ L E  +K      +  Y  
Sbjct: 369 REIFDEMMASKKEMK----VSTLNAMLEVYCMNGLPMEADLLLERARKNRPFPGSSTYKL 424

Query: 422 LIKAYVKA 429
           L KAY KA
Sbjct: 425 LYKAYTKA 432



 Score = 49.3 bits (116), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 50/193 (25%), Positives = 86/193 (44%), Gaps = 7/193 (3%)

Query: 267 VRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQ-YNSVISVYCKNGFIDKASG 325
           +R++      E  G+  +  +  E++  MQ  +   A    Y+ +ISV  K G    A  
Sbjct: 96  IRTEHCFRLFEELGKTDKWLQCLEVFRWMQKQRWYIADNGVYSKLISVMGKKGQTRMAMW 155

Query: 326 LLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGF-KALELGMKLITTKKVRSSTPWLETT 384
           L  EM  +GC+P+   Y  L      S    +   KAL    K+   K +    P + T 
Sbjct: 156 LFSEMRNSGCRPDTSVYNALITAHLHSRDKSKALIKALGYFDKM---KGMERCKPNIVTY 212

Query: 385 LSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKI--NDPNLLRRMIL 442
             ++  FA+  +V  A  LF+EL ++  +   F +N ++ AY K  +     ++L RM  
Sbjct: 213 NILLRAFAQAQNVNQANALFKELNESIVSPDIFTFNGVMDAYGKNGMIKEMESVLSRMKS 272

Query: 443 GGARPDAETYSLL 455
              +PD  T+++L
Sbjct: 273 NQCKPDIITFNVL 285


>gi|356574297|ref|XP_003555285.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g02860-like [Glycine max]
          Length = 794

 Score = 72.4 bits (176), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 78/347 (22%), Positives = 140/347 (40%), Gaps = 42/347 (12%)

Query: 144 GRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSY 203
           GR     ++L  ++AD     V  +  L+   AN+      +KV+  MK    EP  ++Y
Sbjct: 158 GRVSRAASLLHNLEADGFEVDVYGYTSLITAYANNKKYRDALKVFGKMKEVGCEPTLITY 217

Query: 204 -CILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQ 262
             IL     +   +      V+ ++      +  T + LI        G   E      +
Sbjct: 218 NAILNVYGKMGMPWAKIIALVQDMKCHGLAPDLCTYNTLI---SCCRAGSLYEEALDLFE 274

Query: 263 EL------PNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCK 316
           E+      P+  + +Y   ++ +G+  +   A E+  +M+S     +   YNS++S Y +
Sbjct: 275 EIKVAGFRPD--AVTYNALLDVYGKSRRPKEAMEVLKQMESNSFRPSVVTYNSLVSAYVR 332

Query: 317 NGFIDKASGLLKEMSMNGCKPNAITYRHLALGCF---KSNLVEEGFKAL----------- 362
            G ++ A  L ++M   G KP+  TY  L  G     K  L  E F+ +           
Sbjct: 333 GGLLEDALVLKRKMVDKGIKPDVYTYTTLLSGFVNAGKEELAMEVFEEMRKVGCKPNICT 392

Query: 363 --------------ELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELK 408
                         E  +K+    KV   +P + T  +++ +F + G       +FEE+K
Sbjct: 393 FNALIKMYGDRGKFEEMVKVFKEIKVCKCSPDIVTWNTLLAVFGQNGMDSEVSGVFEEMK 452

Query: 409 KANYTKYTFVYNTLIKAYVKAKINDPNL--LRRMILGGARPDAETYS 453
           ++ +      +NTLI AY +    D  +   +RM+  G  PD  TY+
Sbjct: 453 RSRFAPERDTFNTLISAYGRCGSFDQAMAAYKRMLEAGVSPDLSTYN 499



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 91/461 (19%), Positives = 187/461 (40%), Gaps = 68/461 (14%)

Query: 43  KRALEVMEWVIRERPYRPKELDYSYLLE-----------FTIKNHGISQGEKLFCCIPKD 91
           K A+EV++  +    +RP  + Y+ L+              +K   + +G K     P  
Sbjct: 302 KEAMEVLKQ-MESNSFRPSVVTYNSLVSAYVRGGLLEDALVLKRKMVDKGIK-----PDV 355

Query: 92  YQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPN 151
           Y     Y  L+   ++ G  +L++E  ++MR +G   +   FN LI +    G+ + +  
Sbjct: 356 YT----YTTLLSGFVNAGKEELAMEVFEEMRKVGCKPNICTFNALIKMYGDRGKFEEMVK 411

Query: 152 ILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHA 211
           + +++K  K +P + T++ L+ +   +     +  V+ +MKRS   P   ++  L +A+ 
Sbjct: 412 VFKEIKVCKCSPDIVTWNTLLAVFGQNGMDSEVSGVFEEMKRSRFAPERDTFNTLISAYG 471

Query: 212 VARLYTVA----------------ETYVEALEKSMTGNNWSTLDVLI------------- 242
               +  A                 TY   L     G  W   + ++             
Sbjct: 472 RCGSFDQAMAAYKRMLEAGVSPDLSTYNAVLATLARGGLWEQSEKVLAEMKDGGCKPNEV 531

Query: 243 ----ILYGYLAKGKDLERIWATVQELPNVRSKSYVLAIEAF----GRIAQVSRAEELWLE 294
               +L+ Y A G+++ER+ A  +E+ +   K++ + ++       ++  +   E  +LE
Sbjct: 532 TYSSLLHAY-ANGREVERMNALAEEIYSGTIKTHAVLLKTLVLVNSKVDLLVETERAFLE 590

Query: 295 MQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNL 354
            +           N+++S+Y +   + KA+ +L  M  +G   +  +Y  L     ++  
Sbjct: 591 FRKRGISPDVTTSNAMLSIYGRKKMVPKANEILNFMYESGLTLSLTSYNSLMYMYSRT-- 648

Query: 355 VEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTK 414
             E F   E   + I  K +    P + +   +I  +     +  A+ + EE+K      
Sbjct: 649 --ENFHKSEQIFREILDKGIE---PDVISYNIVIYAYCRNDMMDEAKRIIEEMKVPAPVP 703

Query: 415 YTFVYNTLIKAYVKAK--INDPNLLRRMILGGARPDAETYS 453
               YNT I AY      +   +++R MI  G +P+  TY+
Sbjct: 704 DVVTYNTFIAAYAADSMFVEAIDVIRYMIKQGCKPNHNTYN 744



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 80/412 (19%), Positives = 159/412 (38%), Gaps = 53/412 (12%)

Query: 94  NELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNIL 153
           N   +N L+    D+G  +  ++  K+++V   S   + +N L+ +    G    +  + 
Sbjct: 389 NICTFNALIKMYGDRGKFEEMVKVFKEIKVCKCSPDIVTWNTLLAVFGQNGMDSEVSGVF 448

Query: 154 RQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVA 213
            +MK  + AP   TF+ L+       + +  M  Y  M  + V P+  +Y  +    A  
Sbjct: 449 EEMKRSRFAPERDTFNTLISAYGRCGSFDQAMAAYKRMLEAGVSPDLSTYNAVLATLARG 508

Query: 214 RLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQEL--------- 264
            L+  +E  +  ++      N  T   L+  Y   A G+++ER+ A  +E+         
Sbjct: 509 GLWEQSEKVLAEMKDGGCKPNEVTYSSLLHAY---ANGREVERMNALAEEIYSGTIKTHA 565

Query: 265 --------------------------------PNVRSKSYVLAIEAFGRIAQVSRAEELW 292
                                           P+V + + +L+I  +GR   V +A E+ 
Sbjct: 566 VLLKTLVLVNSKVDLLVETERAFLEFRKRGISPDVTTSNAMLSI--YGRKKMVPKANEIL 623

Query: 293 LEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKS 352
             M       +   YNS++ +Y +     K+  + +E+   G +P+ I+Y  +     ++
Sbjct: 624 NFMYESGLTLSLTSYNSLMYMYSRTENFHKSEQIFREILDKGIEPDVISYNIVIYAYCRN 683

Query: 353 NLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANY 412
           ++++E         ++I   KV +  P + T  + I  +A       A ++   + K   
Sbjct: 684 DMMDEA-------KRIIEEMKVPAPVPDVVTYNTFIAAYAADSMFVEAIDVIRYMIKQGC 736

Query: 413 TKYTFVYNTLIKAYVKAKINDPNLLRRMILGGARPDAETYSLLKLAEQFQKK 464
                 YN+++  Y K K+ D        LG   P        +L E+  KK
Sbjct: 737 KPNHNTYNSIVDWYCKLKLRDEACSFVQNLGDLDPQISEDEKSRLLERIAKK 788



 Score = 58.2 bits (139), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 45/187 (24%), Positives = 87/187 (46%), Gaps = 10/187 (5%)

Query: 272 YVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFI-DKASGLLKEM 330
           Y   I A+    +   A +++ +M+ V        YN++++VY K G    K   L+++M
Sbjct: 182 YTSLITAYANNKKYRDALKVFGKMKEVGCEPTLITYNAILNVYGKMGMPWAKIIALVQDM 241

Query: 331 SMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEI 390
             +G  P+  TY  L   C   +L EE        + L    KV    P   T  +++++
Sbjct: 242 KCHGLAPDLCTYNTLISCCRAGSLYEE-------ALDLFEEIKVAGFRPDAVTYNALLDV 294

Query: 391 FAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKINDPNLL--RRMILGGARPD 448
           + +      A  + ++++  ++      YN+L+ AYV+  + +  L+  R+M+  G +PD
Sbjct: 295 YGKSRRPKEAMEVLKQMESNSFRPSVVTYNSLVSAYVRGGLLEDALVLKRKMVDKGIKPD 354

Query: 449 AETYSLL 455
             TY+ L
Sbjct: 355 VYTYTTL 361



 Score = 45.4 bits (106), Expect = 0.059,   Method: Compositional matrix adjust.
 Identities = 47/188 (25%), Positives = 75/188 (39%), Gaps = 20/188 (10%)

Query: 276 IEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGC 335
           +   G+  +VSRA  L   +++         Y S+I+ Y  N     A  +  +M   GC
Sbjct: 151 VSILGKTGRVSRAASLLHNLEADGFEVDVYGYTSLITAYANNKKYRDALKVFGKMKEVGC 210

Query: 336 KPNAITYRHLALGCFKSNLVEEGFKALELGM------KLITTKKVRSSTPWLETTLSIIE 389
           +P  ITY  + L  +            ++GM       L+   K     P L T  ++I 
Sbjct: 211 EPTLITYNAI-LNVYG-----------KMGMPWAKIIALVQDMKCHGLAPDLCTYNTLIS 258

Query: 390 IFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKINDPNL--LRRMILGGARP 447
                     A +LFEE+K A +      YN L+  Y K++     +  L++M     RP
Sbjct: 259 CCRAGSLYEEALDLFEEIKVAGFRPDAVTYNALLDVYGKSRRPKEAMEVLKQMESNSFRP 318

Query: 448 DAETYSLL 455
              TY+ L
Sbjct: 319 SVVTYNSL 326


>gi|302768008|ref|XP_002967424.1| hypothetical protein SELMODRAFT_231012 [Selaginella moellendorffii]
 gi|300165415|gb|EFJ32023.1| hypothetical protein SELMODRAFT_231012 [Selaginella moellendorffii]
          Length = 546

 Score = 72.4 bits (176), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 89/445 (20%), Positives = 198/445 (44%), Gaps = 33/445 (7%)

Query: 43  KRALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQGEKLFC-CIPKDY-QNELLYNN 100
           +R+L + +W+I +  Y P    Y+ +L+  ++       E L    + KD   ++  ++ 
Sbjct: 6   QRSLALHDWMIEKGGYAPSIFAYNVVLKNVLRARQWELAEGLVLEMVEKDLVPDKFTFST 65

Query: 101 LVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADK 160
           L+        ++ ++ ++++M   G     ++F+ LI L           ++  ++KA  
Sbjct: 66  LISGYGRANRLEDAMGWLQEMEAGGIKPDLVIFSTLIELAGKVKDYSKATSLFSKLKASG 125

Query: 161 VAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAE 220
           +AP    ++ ++ +       +    + ++MK + + P+ VSY IL  A+A ++ Y  A+
Sbjct: 126 IAPDKVIYNSMINLYGKAKFYKEAQGLLAEMKEAGLMPDTVSYTILINAYAESQKYLEAK 185

Query: 221 TYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSK--SYVLAIEA 278
                ++      + +T +++I +YG L   +D E ++ ++ +   ++    +Y   I+ 
Sbjct: 186 QVFLEMKTKGIQLDVTTCNMMIDVYGKLEMVRDAEELFWSMSKTLGIQQNVVTYNTMIKV 245

Query: 279 FGRIAQVSRAEELWLEMQSVKQLKATE-QYNSVISVYCKNGFIDKASGLLKEMSMNGCKP 337
           +     +S A  ++  MQ+   ++     YN+++ ++      +KA  L+++M   G +P
Sbjct: 246 YKEAELLSEAFNVFYYMQNKGGVEPNVITYNTILFLHGLTLQHEKAMRLVRKMQQRGIEP 305

Query: 338 NAITYRHL------------ALGCFKSNLVEEGFKALELGMKLITTKKVRSS-------- 377
           NA+TY  L            A   FK+ L E+GF+  E+  + +     R+         
Sbjct: 306 NAVTYSTLISIYGKTGKYDRAAFLFKT-LREKGFEMDEILYQSMIVVYERAGLVAHAKRL 364

Query: 378 -----TPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAK-- 430
                 P +    + I I A+   +  A  L+    +A   K +  Y ++I+ +++ K  
Sbjct: 365 LEELKQPDIVPRDTAISILAKAEKLEEAAKLYWRSHEAGEIKESVTYKSMIQLFMRNKRS 424

Query: 431 INDPNLLRRMILGGARPDAETYSLL 455
            N  ++   M   G  PD+ET  +L
Sbjct: 425 KNAIDVFENMRESGFLPDSETTVVL 449


>gi|299471045|emb|CBN78905.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 755

 Score = 72.4 bits (176), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 94/384 (24%), Positives = 150/384 (39%), Gaps = 50/384 (13%)

Query: 94  NELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNIL 153
           N + +N+ ++AC   G  + ++E ++++  LG +     FN  I   +  GR K    +L
Sbjct: 354 NTIHFNSAIVACGKGGQWEKAVELLREVTALGLTPDATSFNSAIAACTKSGRWKEALELL 413

Query: 154 RQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHA-- 211
           ++M A ++ P   +++  ++        E  +++   M    + PN +S  I   A    
Sbjct: 414 KEMPAKRLKPDAISYNSAIEACGKGGQWEMALELRRQMPTKGLTPNVISSNIAIRACGER 473

Query: 212 --------------VARLYTVAETYVEALEKSMTGNNWS-TLDVLIILYGYLAKGKDLER 256
                            L     TY  A++    G  W   LD+L       AK K+L  
Sbjct: 474 GRWQEGLELLRQMPAQGLTPNVITYNSAIKTCGKGGQWEKALDLL-------AKMKELAM 526

Query: 257 IWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCK 316
                   P+  S +Y  AI A  +  +   A  L  EM           Y + I  Y K
Sbjct: 527 T-------PD--SITYNSAIAACSKRGRWKEAVALLREMPGQGLTPDVISYTAAIDAYGK 577

Query: 317 NGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRS 376
           NG  ++A  LL++M   G  PN ITY  +   C +    E   KAL+L  +L  T    +
Sbjct: 578 NGQWERAVELLRQMPTKGLTPNVITYNSVIKACGRGGEWE---KALDLLKELKET----A 630

Query: 377 STPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKA------YVKAK 430
             P L +    I    ++G    A +L  E+     T     Y + I+A      + KA 
Sbjct: 631 VAPDLMSYNLAISACGKRGRWEEALDLLREMPAEGLTPDVISYTSAIRACNAEGEWEKAL 690

Query: 431 INDPNLLRRMILGGARPDAETYSL 454
                LL  M   G  P A +YSL
Sbjct: 691 ----GLLNLMGAHGVSPTATSYSL 710



 Score = 72.0 bits (175), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 83/362 (22%), Positives = 146/362 (40%), Gaps = 45/362 (12%)

Query: 94  NELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNIL 153
           +E+ YN+ + AC   G  +  +  +++M  +G +   + +N +I      G+ K   ++L
Sbjct: 214 DEISYNSAIKACGRGGQWERVIGLLREMPSVGLTPDAITYNSVITGCGKEGQWKEALSVL 273

Query: 154 RQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVA 213
            +M A  + P   ++++ ++        +  ++V   M+   V P+ +SY          
Sbjct: 274 TEMSAKGLTPETISYNMAIRACGRSGRWKEAVEVLRQMESQGVTPDVISY---------- 323

Query: 214 RLYTVAETYVEALEKSMTGNNWST-LDVLIILYGYLAKGKDLERIWATVQELPNVRSKSY 272
                      A++    G  W T +D+L  + G                  PN  +  +
Sbjct: 324 ---------DAAIKACGGGGQWETSVDLLDEMAGRGVA--------------PN--TIHF 358

Query: 273 VLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSM 332
             AI A G+  Q  +A EL  E+ ++        +NS I+   K+G   +A  LLKEM  
Sbjct: 359 NSAIVACGKGGQWEKAVELLREVTALGLTPDATSFNSAIAACTKSGRWKEALELLKEMPA 418

Query: 333 NGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFA 392
              KP+AI+Y      C K    E    ALEL  ++ T    +  TP + ++   I    
Sbjct: 419 KRLKPDAISYNSAIEACGKGGQWE---MALELRRQMPT----KGLTPNVISSNIAIRACG 471

Query: 393 EKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKINDP--NLLRRMILGGARPDAE 450
           E+G       L  ++     T     YN+ IK   K    +   +LL +M      PD+ 
Sbjct: 472 ERGRWQEGLELLRQMPAQGLTPNVITYNSAIKTCGKGGQWEKALDLLAKMKELAMTPDSI 531

Query: 451 TY 452
           TY
Sbjct: 532 TY 533



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 73/302 (24%), Positives = 120/302 (39%), Gaps = 40/302 (13%)

Query: 94  NELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNIL 153
           + + YN+ + AC   G  +++LE  ++M   G + + +  N  I      GR +    +L
Sbjct: 424 DAISYNSAIEACGKGGQWEMALELRRQMPTKGLTPNVISSNIAIRACGERGRWQEGLELL 483

Query: 154 RQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSY--CILATA-- 209
           RQM A  + P+V T++  +K        E  + + + MK   + P+ ++Y   I A +  
Sbjct: 484 RQMPAQGLTPNVITYNSAIKTCGKGGQWEKALDLLAKMKELAMTPDSITYNSAIAACSKR 543

Query: 210 ----HAVARLYTVAE--------TYVEALEKSMTGNNWS------------TLDVLIILY 245
                AVA L  +          +Y  A++       W              L   +I Y
Sbjct: 544 GRWKEAVALLREMPGQGLTPDVISYTAAIDAYGKNGQWERAVELLRQMPTKGLTPNVITY 603

Query: 246 GYL----AKGKDLERIWATVQEL------PNVRSKSYVLAIEAFGRIAQVSRAEELWLEM 295
             +     +G + E+    ++EL      P++   SY LAI A G+  +   A +L  EM
Sbjct: 604 NSVIKACGRGGEWEKALDLLKELKETAVAPDL--MSYNLAISACGKRGRWEEALDLLREM 661

Query: 296 QSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLV 355
            +         Y S I      G  +KA GLL  M  +G  P A +Y      C K    
Sbjct: 662 PAEGLTPDVISYTSAIRACNAEGEWEKALGLLNLMGAHGVSPTATSYSLAIEACGKGGRR 721

Query: 356 EE 357
           EE
Sbjct: 722 EE 723



 Score = 49.7 bits (117), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 46/162 (28%), Positives = 65/162 (40%), Gaps = 11/162 (6%)

Query: 265 PNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKAS 324
           PNV    Y  AIEA G   Q   A  L  EM   + +     YNS I    + G  ++  
Sbjct: 178 PNVFC--YNSAIEACGSGDQWEIAVSLLREMADREVVPDEISYNSAIKACGRGGQWERVI 235

Query: 325 GLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKAL-ELGMKLITTKKVRSSTPWLET 383
           GLL+EM   G  P+AITY  +  GC K    +E    L E+  K +T + +  +      
Sbjct: 236 GLLREMPSVGLTPDAITYNSVITGCGKEGQWKEALSVLTEMSAKGLTPETISYNM----- 290

Query: 384 TLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKA 425
               I      G    A  +  +++    T     Y+  IKA
Sbjct: 291 ---AIRACGRSGRWKEAVEVLRQMESQGVTPDVISYDAAIKA 329


>gi|242069905|ref|XP_002450229.1| hypothetical protein SORBIDRAFT_05g002220 [Sorghum bicolor]
 gi|241936072|gb|EES09217.1| hypothetical protein SORBIDRAFT_05g002220 [Sorghum bicolor]
          Length = 797

 Score = 72.4 bits (176), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 94/406 (23%), Positives = 166/406 (40%), Gaps = 20/406 (4%)

Query: 59  RPKELDYSYLLEFTIKNHGISQGEKLF-CCIPKDYQ-NELLYNNLVIACLDKGVIKLSLE 116
           +P    Y  LL +   N    +   LF   I K  + N  +Y  L+     KG +    +
Sbjct: 305 KPDCYTYGSLLNYLCNNGRCREARFLFDSMIRKGIKPNVAIYGILIHGYATKGALSEMHD 364

Query: 117 YMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEA 176
            +  M   G S  + +FN +    +         +I  +MK   ++P V  +  L+    
Sbjct: 365 LLNLMVENGLSPDHHIFNIIFTAYAKKAMIDEAMHIFNKMKQQGLSPDVVNYGALIDALC 424

Query: 177 NDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVA-ETYVEALEKSMTGN-- 233
               ++  +  ++ M    V PN   +  L         +  A E Y E L + +  +  
Sbjct: 425 KLGRVDDAVLKFNQMMNEGVAPNIFVFNSLVYGLCTVDKWEKAKEFYFEMLNQGIRPDVV 484

Query: 234 NWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSKSYVLAIEAF-GRIAQVSRAEELW 292
            ++T+   +   G + K + L  +   V   P V S + ++      GRI + +++ ++ 
Sbjct: 485 FFNTILCNLCTKGQVMKAQRLIDLMERVGTRPGVISYTTLIGGHCLVGRIDEAAKSLDVM 544

Query: 293 LEMQSVKQLKATE-QYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFK 351
           L +     LK  E  YN+++  YC+ G ID A G+ +EM  NG  P  +TY  +  G F 
Sbjct: 545 LSVG----LKPDEWTYNTLLHGYCRAGRIDDAYGVFREMLRNGITPGVVTYSTILHGLFT 600

Query: 352 SNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKAN 411
           +    E   A EL + +IT+ K      W+     I+   ++   V  A  LF+ L   +
Sbjct: 601 TRRFSE---AKELYLNMITSGK--QWNIWIYNI--ILNGLSKNNCVDEAFKLFQSLCSKD 653

Query: 412 YTKYTFVYNTLIKAYVKAKINDP--NLLRRMILGGARPDAETYSLL 455
           +      +N +I A  K+  N+   +L   +   G  PD  TY L+
Sbjct: 654 FQLEITTFNIMIGALFKSGRNEDAMHLFATISSYGLVPDVFTYCLI 699



 Score = 60.1 bits (144), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 52/196 (26%), Positives = 79/196 (40%), Gaps = 11/196 (5%)

Query: 265 PNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKAS 324
           PNV   SY + I  F    QV +A  L+LEM           Y +VI   CK   +D+A 
Sbjct: 201 PNV--VSYAIVINGFFTEGQVDKAYNLFLEMMDRGIQPNVVTYTTVIDGLCKAQVVDRAE 258

Query: 325 GLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETT 384
           G+ ++M   G KP+  TY  L  G       +E  + LE               P   T 
Sbjct: 259 GVFQQMIDKGVKPDNDTYNCLIHGYLSIGKWKEVVRMLE-------EMSAHGLKPDCYTY 311

Query: 385 LSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAY-VKAKIND-PNLLRRMIL 442
            S++      G    A  LF+ + +        +Y  LI  Y  K  +++  +LL  M+ 
Sbjct: 312 GSLLNYLCNNGRCREARFLFDSMIRKGIKPNVAIYGILIHGYATKGALSEMHDLLNLMVE 371

Query: 443 GGARPDAETYSLLKLA 458
            G  PD   ++++  A
Sbjct: 372 NGLSPDHHIFNIIFTA 387



 Score = 58.9 bits (141), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 41/132 (31%), Positives = 63/132 (47%), Gaps = 6/132 (4%)

Query: 326 LLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTL 385
           L+K M   GC P+ ++Y  L  G       EE   ALEL + ++   + RS  P + +  
Sbjct: 152 LVKRMPELGCTPDVVSYNTLLKGFCNEKRAEE---ALEL-LHMMADSQGRSCPPNVVSYA 207

Query: 386 SIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKIND--PNLLRRMILG 443
            +I  F  +G V  A NLF E+           Y T+I    KA++ D    + ++MI  
Sbjct: 208 IVINGFFTEGQVDKAYNLFLEMMDRGIQPNVVTYTTVIDGLCKAQVVDRAEGVFQQMIDK 267

Query: 444 GARPDAETYSLL 455
           G +PD +TY+ L
Sbjct: 268 GVKPDNDTYNCL 279



 Score = 46.2 bits (108), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 65/314 (20%), Positives = 117/314 (37%), Gaps = 56/314 (17%)

Query: 152 ILRQMKADKVAPHVSTFHILMKIEANDHNIEG---LMKVYSDMKRSEVEPNEVSYCILA- 207
           ++++M      P V +++ L+K   N+   E    L+ + +D +     PN VSY I+  
Sbjct: 152 LVKRMPELGCTPDVVSYNTLLKGFCNEKRAEEALELLHMMADSQGRSCPPNVVSYAIVIN 211

Query: 208 ---TAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQEL 264
              T   V + Y +   ++E +++ +                                  
Sbjct: 212 GFFTEGQVDKAYNL---FLEMMDRGIQ--------------------------------- 235

Query: 265 PNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKAS 324
           PNV   +Y   I+   +   V RAE ++ +M         + YN +I  Y   G   +  
Sbjct: 236 PNV--VTYTTVIDGLCKAQVVDRAEGVFQQMIDKGVKPDNDTYNCLIHGYLSIGKWKEVV 293

Query: 325 GLLKEMSMNGCKPNAITYRHLA-LGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLET 383
            +L+EMS +G KP+  TY  L    C      E  F        L  +   +   P +  
Sbjct: 294 RMLEEMSAHGLKPDCYTYGSLLNYLCNNGRCREARF--------LFDSMIRKGIKPNVAI 345

Query: 384 TLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKINDP--NLLRRMI 441
              +I  +A KG +    +L   + +   +    ++N +  AY K  + D   ++  +M 
Sbjct: 346 YGILIHGYATKGALSEMHDLLNLMVENGLSPDHHIFNIIFTAYAKKAMIDEAMHIFNKMK 405

Query: 442 LGGARPDAETYSLL 455
             G  PD   Y  L
Sbjct: 406 QQGLSPDVVNYGAL 419



 Score = 43.9 bits (102), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 68/319 (21%), Positives = 119/319 (37%), Gaps = 43/319 (13%)

Query: 96  LLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQ 155
           + +N ++     KG +  +   +  M  +G     + +  LI  +   GR       L  
Sbjct: 484 VFFNTILCNLCTKGQVMKAQRLIDLMERVGTRPGVISYTTLIGGHCLVGRIDEAAKSLDV 543

Query: 156 MKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSY-CILATAHAVAR 214
           M +  + P   T++ L+        I+    V+ +M R+ + P  V+Y  IL       R
Sbjct: 544 MLSVGLKPDEWTYNTLLHGYCRAGRIDDAYGVFREMLRNGITPGVVTYSTILHGLFTTRR 603

Query: 215 LYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSKSYVL 274
                E Y+  +    +G  W+     IIL G L+K   ++  +   Q L    SK + L
Sbjct: 604 FSEAKELYLNMIT---SGKQWNIWIYNIILNG-LSKNNCVDEAFKLFQSLC---SKDFQL 656

Query: 275 AIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNG 334
            I  F                            N +I    K+G  + A  L   +S  G
Sbjct: 657 EITTF----------------------------NIMIGALFKSGRNEDAMHLFATISSYG 688

Query: 335 CKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEK 394
             P+  TY  +A      NL+EEG+  LE    L +  +   +TP      +++     +
Sbjct: 689 LVPDVFTYCLIA-----ENLIEEGY--LEEFDDLFSAMEKSGTTPNSRMLNALVRRLLHR 741

Query: 395 GDVGNAENLFEELKKANYT 413
           GD+  A     +L + N++
Sbjct: 742 GDITRAGAYLCKLDEKNFS 760


>gi|307105412|gb|EFN53661.1| hypothetical protein CHLNCDRAFT_58444 [Chlorella variabilis]
          Length = 1131

 Score = 72.4 bits (176), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 56/252 (22%), Positives = 106/252 (42%), Gaps = 42/252 (16%)

Query: 98  YNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMK 157
           ++ L+  C+  G  KL+L+  + M+  G   + + +N LI +    G+ +    +L QMK
Sbjct: 329 FSALMNVCIKCGQYKLALDVYRDMQAAGCPANVVTYNTLIDVYGKSGQWEEALAVLEQMK 388

Query: 158 ADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYT 217
            +++ P   TF+ LM      +  +  ++VY  M  S   PN  +Y  L +AH       
Sbjct: 389 RERIQPVTRTFNTLMIACNTSNQWQEALRVYEQMAASSHPPNTTTYNALISAH------- 441

Query: 218 VAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSKSYVLA-- 275
                                          +KG DL ++ A  +E+     +  V+   
Sbjct: 442 -------------------------------SKGGDLPKVLAVFKEMVQKGCERSVITYS 470

Query: 276 --IEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMN 333
             I A  +  +   A +L+ EM+    +     YNS+I+   +    +KA+ + ++M   
Sbjct: 471 SLISACEKAGEWKLALQLFEEMRGEGCVPNVISYNSLITACAQGAQWEKAAEVFEQMQRQ 530

Query: 334 GCKPNAITYRHL 345
           GC+P+ ++Y  L
Sbjct: 531 GCRPDVVSYTAL 542



 Score = 58.5 bits (140), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 62/291 (21%), Positives = 120/291 (41%), Gaps = 17/291 (5%)

Query: 143 PGRRKTIPNILRQM-KADKVAPHVS--TFHILMKIEANDHNIEGLMKVYSDMKRSEVEPN 199
           P R   + ++LR++     +AP +   TF  ++       ++   M +  +M+   +E N
Sbjct: 266 PHRGAQLFDLLRRLGPGSPLAPLLDEFTFTSMISNCVAQQDLGRAMALAEEMRDRGIERN 325

Query: 200 EVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWA 259
             ++  L         Y +A      ++ +    N  T + LI +YG   K    E   A
Sbjct: 326 VHTFSALMNVCIKCGQYKLALDVYRDMQAAGCPANVVTYNTLIDVYG---KSGQWEEALA 382

Query: 260 TVQELPNVR----SKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYC 315
            ++++   R    ++++   + A     Q   A  ++ +M +      T  YN++IS + 
Sbjct: 383 VLEQMKRERIQPVTRTFNTLMIACNTSNQWQEALRVYEQMAASSHPPNTTTYNALISAHS 442

Query: 316 KNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVR 375
           K G + K   + KEM   GC+ + ITY  L   C K+          +L ++L    +  
Sbjct: 443 KGGDLPKVLAVFKEMVQKGCERSVITYSSLISACEKAG-------EWKLALQLFEEMRGE 495

Query: 376 SSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAY 426
              P + +  S+I   A+      A  +FE++++         Y  LI+AY
Sbjct: 496 GCVPNVISYNSLITACAQGAQWEKAAEVFEQMQRQGCRPDVVSYTALIQAY 546



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 45/186 (24%), Positives = 82/186 (44%), Gaps = 19/186 (10%)

Query: 252 KDLERIWATVQELPNVRSKSYVLAIEAFG-------RIAQVSRAEELWLEMQSVKQLKAT 304
           +DL R  A  +E+   R +     +  F        +  Q   A +++ +MQ+       
Sbjct: 305 QDLGRAMALAEEM---RDRGIERNVHTFSALMNVCIKCGQYKLALDVYRDMQAAGCPANV 361

Query: 305 EQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALEL 364
             YN++I VY K+G  ++A  +L++M     +P   T+  L + C  SN  +E  +  E 
Sbjct: 362 VTYNTLIDVYGKSGQWEEALAVLEQMKRERIQPVTRTFNTLMIACNTSNQWQEALRVYE- 420

Query: 365 GMKLITTKKVRSSTPWLETTL-SIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLI 423
                  +   SS P   TT  ++I   ++ GD+     +F+E+ +    +    Y++LI
Sbjct: 421 -------QMAASSHPPNTTTYNALISAHSKGGDLPKVLAVFKEMVQKGCERSVITYSSLI 473

Query: 424 KAYVKA 429
            A  KA
Sbjct: 474 SACEKA 479


>gi|413934354|gb|AFW68905.1| hypothetical protein ZEAMMB73_510949 [Zea mays]
          Length = 845

 Score = 72.4 bits (176), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 88/401 (21%), Positives = 159/401 (39%), Gaps = 61/401 (15%)

Query: 98  YNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMK 157
           YN LV     +G +  +     +M  +G  ++ + FN LI   +  G+        R+M+
Sbjct: 291 YNILVDVLCHEGRMPEARRLFDEMAQVGIQVNTITFNVLIDGYAKSGQMDQASAAYREMQ 350

Query: 158 ADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPN--EVSYCILATAHAVARL 215
           A  + P   TF+I+    A+       +    DM  S +  +  ++  C L   H   RL
Sbjct: 351 ARGLVPDSCTFNII-AARAHKFGYAAQLVHDHDMFSSHMSADGLDMLVCRLCWDH---RL 406

Query: 216 YTVAETYVEALEKSM----TGNNWSTLDVLIILY---GYLAKGKDLERIWATVQELPN-- 266
               E  + A+E+ +    TG N      LI  Y   G   +  +L RI   +   P+  
Sbjct: 407 DDAWELLLGAIEQGVPLRVTGFN-----ALIAAYSKEGLHEEASELYRIMNKLGLAPSSS 461

Query: 267 ------------------------------VRSKSYVLAIEAFGRIAQVSRAEELWLEMQ 296
                                           S S+ + ++A+ R      A + W +M 
Sbjct: 462 TFNYLIMGLCNQGRLDEAQLLLEHMVSKGYCLSTSFTICLDAYFRDGNAVGALKCWDDMG 521

Query: 297 SVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALG-CFKSNLV 355
           ++        +++ I+  C+   +++A     EM+  G  PN ITY  +    C   N+ 
Sbjct: 522 NIGLQTDFIAFSAYINGLCRLDCVNEAYQAFAEMTSRGIVPNNITYNSIISALCKAGNMT 581

Query: 356 EEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKY 415
           E         +KL+   +     P + T+  +I+    +G +   +NL  ++     T  
Sbjct: 582 E--------ALKLVQNMRQSGLVPDIYTSNILIDGLCREGKLKMVDNLLLDMCSNGLTPD 633

Query: 416 TFVYNTLIKAYVKAK-INDP-NLLRRMILGGARPDAETYSL 454
           T  YNT+I AY +A+ +N   N + +M++ G  PD  TY++
Sbjct: 634 TVTYNTIINAYCRAQDMNSAMNFMNKMLVAGCEPDIFTYNI 674



 Score = 58.2 bits (139), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 46/178 (25%), Positives = 78/178 (43%), Gaps = 11/178 (6%)

Query: 281 RIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAI 340
           R  +V  A  ++ EM +     +   +N+++  +C  G +  ASGLL  M  +G  P+  
Sbjct: 195 RSGEVRAAWNVFEEMTAEGPRPSLATFNAMLLGFCHRGMVRVASGLLGIMGKSGIAPDVC 254

Query: 341 TYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSST-PWLETTLSIIEIFAEKGDVGN 399
           +Y  L  G        + FK  E GM        RS   P + T   ++++   +G +  
Sbjct: 255 SYNILIKGHCVFGWSRDAFKMFE-GMH-------RSGCEPTVVTYNILVDVLCHEGRMPE 306

Query: 400 AENLFEELKKANYTKYTFVYNTLIKAYVKAKIND--PNLLRRMILGGARPDAETYSLL 455
           A  LF+E+ +      T  +N LI  Y K+   D      R M   G  PD+ T++++
Sbjct: 307 ARRLFDEMAQVGIQVNTITFNVLIDGYAKSGQMDQASAAYREMQARGLVPDSCTFNII 364



 Score = 52.0 bits (123), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 87/417 (20%), Positives = 156/417 (37%), Gaps = 76/417 (18%)

Query: 108 KGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVST 167
            G ++ +    ++M   G   S   FN +++     G  +    +L  M    +AP V +
Sbjct: 196 SGEVRAAWNVFEEMTAEGPRPSLATFNAMLLGFCHRGMVRVASGLLGIMGKSGIAPDVCS 255

Query: 168 FHILMKIEANDHNIEG----LMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYV 223
           ++IL+K     H + G      K++  M RS  EP  V+Y IL            A    
Sbjct: 256 YNILIK----GHCVFGWSRDAFKMFEGMHRSGCEPTVVTYNILVDVLCHEGRMPEARRLF 311

Query: 224 EALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQEL------PNVRSKSYVLA-I 276
           + + +     N  T +VLI  Y   AK   +++  A  +E+      P+  + + + A  
Sbjct: 312 DEMAQVGIQVNTITFNVLIDGY---AKSGQMDQASAAYREMQARGLVPDSCTFNIIAARA 368

Query: 277 EAFGRIAQVSRAEELWLEMQSVKQLK---------------------ATEQ--------Y 307
             FG  AQ+    +++    S   L                      A EQ        +
Sbjct: 369 HKFGYAAQLVHDHDMFSSHMSADGLDMLVCRLCWDHRLDDAWELLLGAIEQGVPLRVTGF 428

Query: 308 NSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALEL--- 364
           N++I+ Y K G  ++AS L + M+  G  P++ T+ +L +G      ++E    LE    
Sbjct: 429 NALIAAYSKEGLHEEASELYRIMNKLGLAPSSSTFNYLIMGLCNQGRLDEAQLLLEHMVS 488

Query: 365 -GMKLITTKKVRSSTPWLE-TTLSIIEIFAEKGDVG----------------------NA 400
            G  L T+  +     + +   +  ++ + + G++G                       A
Sbjct: 489 KGYCLSTSFTICLDAYFRDGNAVGALKCWDDMGNIGLQTDFIAFSAYINGLCRLDCVNEA 548

Query: 401 ENLFEELKKANYTKYTFVYNTLIKAYVKAK--INDPNLLRRMILGGARPDAETYSLL 455
              F E+           YN++I A  KA        L++ M   G  PD  T ++L
Sbjct: 549 YQAFAEMTSRGIVPNNITYNSIISALCKAGNMTEALKLVQNMRQSGLVPDIYTSNIL 605



 Score = 45.1 bits (105), Expect = 0.078,   Method: Compositional matrix adjust.
 Identities = 56/247 (22%), Positives = 101/247 (40%), Gaps = 42/247 (17%)

Query: 104 ACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAP 163
           A L  G+   +L+ + ++R  G++ S    + L+ L    G  +   N+  +M A+   P
Sbjct: 157 AFLAAGMAAEALDVLARVRRSGNTPSLSALSALLRLLFRSGEVRAAWNVFEEMTAEGPRP 216

Query: 164 HVSTFHILMKIEANDHNIEGLMKVYSD----MKRSEVEPNEVSYCILATAHAVARLYTVA 219
            ++TF+ ++    +     G+++V S     M +S + P+  SY IL   H V       
Sbjct: 217 SLATFNAMLLGFCH----RGMVRVASGLLGIMGKSGIAPDVCSYNILIKGHCVF------ 266

Query: 220 ETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSKSYVLAIEAF 279
                          WS  D   +  G    G +           P V   +Y + ++  
Sbjct: 267 --------------GWSR-DAFKMFEGMHRSGCE-----------PTV--VTYNILVDVL 298

Query: 280 GRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNA 339
               ++  A  L+ EM  V     T  +N +I  Y K+G +D+AS   +EM   G  P++
Sbjct: 299 CHEGRMPEARRLFDEMAQVGIQVNTITFNVLIDGYAKSGQMDQASAAYREMQARGLVPDS 358

Query: 340 ITYRHLA 346
            T+  +A
Sbjct: 359 CTFNIIA 365


>gi|358346916|ref|XP_003637510.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355503445|gb|AES84648.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 718

 Score = 72.4 bits (176), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 75/361 (20%), Positives = 151/361 (41%), Gaps = 45/361 (12%)

Query: 98  YNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMK 157
           YN+L+      G  + ++E +++M +   S + + +N LI         +   ++ R + 
Sbjct: 301 YNSLISGMCKLGEFEKAIEILQQMILRECSPNTVTYNTLISALCKENEIEAATDLARILV 360

Query: 158 ADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYT 217
           +  + P V TF+ L++      N +  M+++ +MK    +P+E +Y IL  +    R   
Sbjct: 361 SKGLLPDVCTFNTLIQGLCLSKNQDIAMEMFEEMKNKGCKPDEFTYSILIDSLCYERRLK 420

Query: 218 VAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSKSYVLAIE 277
            A   ++ +E S    N        ++Y  L                           I+
Sbjct: 421 EALMLLKEMESSGCARNA-------VVYNTL---------------------------ID 446

Query: 278 AFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKP 337
              +  ++  AEE++ +M+ +   +++  YN++I   CKN  +++AS L+ +M M G KP
Sbjct: 447 GLCKSRRIEDAEEIFDQMELLGVSRSSVTYNTLIDGLCKNKRVEEASQLMDQMIMEGLKP 506

Query: 338 NAITYRH-LALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGD 396
           +  TY   L   C   ++ + G         ++ T       P + T  ++I      G 
Sbjct: 507 DKFTYNSLLTYFCRVGDIEKAG--------DIVQTMASNGCEPDIFTYGTLIGGLCRAGR 558

Query: 397 VGNAENLFEELKKANYTKYTFVYNTLIKA-YVKAKINDP-NLLRRMILGGARPDAETYSL 454
           V  A  L   ++          YN +I+A +++ +  +   L R M+     PDA T+ +
Sbjct: 559 VDVASKLLRSVQMKGIVLTPHAYNPVIQALFMRKRTKEGMRLFREMMEKSDPPDALTHKI 618

Query: 455 L 455
           +
Sbjct: 619 V 619



 Score = 61.6 bits (148), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 71/316 (22%), Positives = 135/316 (42%), Gaps = 34/316 (10%)

Query: 155 QMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVAR 214
           +M  + +   VSTF++L+K     H +   + +  +M    ++P+E+++           
Sbjct: 148 KMVNEGIVLDVSTFNVLIKALCKAHQLRPAILMLEEMANHGLKPDEITF----------- 196

Query: 215 LYTVAETYVE--------ALEKSMTGNNW--STLDVLIILYGYLAKGK---DLERIWATV 261
             T+ + ++E         ++K M G     + + V +++ G+  +G+    L  +    
Sbjct: 197 -TTLMQGFIEEGDLNGALKMKKQMLGYGCLLTNVSVKVLVNGFCKEGRVEEALRFVLEVS 255

Query: 262 QELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFID 321
           +E  +    ++   +  F RI  V+ A ++   M           YNS+IS  CK G  +
Sbjct: 256 EEGFSPDQVTFNSLVNGFCRIGNVNDALDIVDFMIEKGFDPDVYTYNSLISGMCKLGEFE 315

Query: 322 KASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWL 381
           KA  +L++M +  C PN +TY  L     K N +E    A +L   L++    +   P +
Sbjct: 316 KAIEILQQMILRECSPNTVTYNTLISALCKENEIE---AATDLARILVS----KGLLPDV 368

Query: 382 ETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKA--YVKAKINDPNLLRR 439
            T  ++I+      +   A  +FEE+K        F Y+ LI +  Y +       LL+ 
Sbjct: 369 CTFNTLIQGLCLSKNQDIAMEMFEEMKNKGCKPDEFTYSILIDSLCYERRLKEALMLLKE 428

Query: 440 MILGGARPDAETYSLL 455
           M   G   +A  Y+ L
Sbjct: 429 MESSGCARNAVVYNTL 444



 Score = 58.2 bits (139), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 78/351 (22%), Positives = 141/351 (40%), Gaps = 57/351 (16%)

Query: 148 TIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILA 207
           +I  +L+Q+K+    P+ +TF  L++   N H IE L+K+           NE+ +    
Sbjct: 73  SITTLLKQLKSSGSIPNATTFATLIQSFTNFHEIENLLKILE---------NELGFKPDT 123

Query: 208 TAHAVARLYTVAET---YVEALEKSMTGNNWSTLDV--LIILYGYLAKGKDLERIWATVQ 262
             + +A    V +     VE L   M  N    LDV    +L   L K   L      ++
Sbjct: 124 NFYNIALNALVEDNKLKLVEMLHSKMV-NEGIVLDVSTFNVLIKALCKAHQLRPAILMLE 182

Query: 263 ELPNVRSK----SYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNG 318
           E+ N   K    ++   ++ F     ++ A ++  +M     L        +++ +CK G
Sbjct: 183 EMANHGLKPDEITFTTLMQGFIEEGDLNGALKMKKQMLGYGCLLTNVSVKVLVNGFCKEG 242

Query: 319 FIDKASGLLKEMSMNGCKPNAITYRHLALG-CFKSN----------LVEEGF-------- 359
            +++A   + E+S  G  P+ +T+  L  G C   N          ++E+GF        
Sbjct: 243 RVEEALRFVLEVSEEGFSPDQVTFNSLVNGFCRIGNVNDALDIVDFMIEKGFDPDVYTYN 302

Query: 360 -------------KALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEE 406
                        KA+E+  ++I    +R  +P   T  ++I    ++ ++  A +L   
Sbjct: 303 SLISGMCKLGEFEKAIEILQQMI----LRECSPNTVTYNTLISALCKENEIEAATDLARI 358

Query: 407 LKKANYTKYTFVYNTLIKAYVKAKIND--PNLLRRMILGGARPDAETYSLL 455
           L           +NTLI+    +K  D    +   M   G +PD  TYS+L
Sbjct: 359 LVSKGLLPDVCTFNTLIQGLCLSKNQDIAMEMFEEMKNKGCKPDEFTYSIL 409


>gi|357505881|ref|XP_003623229.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355498244|gb|AES79447.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 770

 Score = 72.4 bits (176), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 54/187 (28%), Positives = 86/187 (45%), Gaps = 9/187 (4%)

Query: 271 SYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEM 330
           ++ L ++ F +     +A +L+  M+    +     YN+VI+  CK   + +A  L KEM
Sbjct: 131 NFNLLLKGFCQSGDSHKAMDLFCMMKRNCLIPDCVSYNTVINGLCKGKRLVEAKELFKEM 190

Query: 331 SMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEI 390
               CKPN++T+  L  G  K+  VEEGF  LE   K+     V   +       ++I  
Sbjct: 191 KGGECKPNSVTFSALIDGFCKNGDVEEGFGLLEEMEKMGLEGDVFVYS-------ALISG 243

Query: 391 FAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAK--INDPNLLRRMILGGARPD 448
           F  KGD+   + LF E+ + N T     Y+ L+ A  K +       +L  M     RPD
Sbjct: 244 FCSKGDIERGKELFNEMLRKNVTPNVVTYSCLMNALCKKQKWKEAAQMLDTMTGCKVRPD 303

Query: 449 AETYSLL 455
              Y++L
Sbjct: 304 VVAYTVL 310



 Score = 59.7 bits (143), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 65/315 (20%), Positives = 136/315 (43%), Gaps = 24/315 (7%)

Query: 152 ILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHA 211
           + ++MK  +  P+  TF  L+     + ++E    +  +M++  +E +   Y  L +   
Sbjct: 186 LFKEMKGGECKPNSVTFSALIDGFCKNGDVEEGFGLLEEMEKMGLEGDVFVYSALISGFC 245

Query: 212 V-ARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSK 270
               +    E + E L K++T N        ++ Y  L      ++ W    ++ +  + 
Sbjct: 246 SKGDIERGKELFNEMLRKNVTPN--------VVTYSCLMNALCKKQKWKEAAQMLDTMTG 297

Query: 271 --------SYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDK 322
                   +Y +  +   +  + S A ++   M    +      YN++I+  CK G +D 
Sbjct: 298 CKVRPDVVAYTVLADGLSKNGRASDAIKVLDLMVKRGEEPNNVTYNAIINGLCKEGRVDD 357

Query: 323 ASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLE 382
           A G+L+ M+  G KP+ +TY  L  G      ++E   A++L + L+ +K+         
Sbjct: 358 ALGILETMAKKGKKPDVVTYSTLVKGLCGVGKIDE---AVDL-LNLLMSKEFHIKPDVFA 413

Query: 383 TTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKA-KINDP-NLLRRM 440
             L I E+  ++  + +A+ ++  + +  +      YN LI  Y+ A K+     L +  
Sbjct: 414 FNLVIQELCKQR-RLRHAKRVYYTMVERGFPSNIVTYNILIDGYLSAGKLTKALELWKDA 472

Query: 441 ILGGARPDAETYSLL 455
           +  G  P+A TY++L
Sbjct: 473 VDSGISPNAATYTVL 487



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 87/404 (21%), Positives = 159/404 (39%), Gaps = 17/404 (4%)

Query: 33  INRLRKLQLNKRALEVMEWV--IRERPYRPKELDYSYLLEFTIKNHGISQGEKLFCCIPK 90
           IN L K    KR +E  E    ++    +P  + +S L++   KN  + +G  L   + K
Sbjct: 171 INGLCK---GKRLVEAKELFKEMKGGECKPNSVTFSALIDGFCKNGDVEEGFGLLEEMEK 227

Query: 91  D--YQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKT 148
                +  +Y+ L+     KG I+   E   +M     + + + ++ L+       + K 
Sbjct: 228 MGLEGDVFVYSALISGFCSKGDIERGKELFNEMLRKNVTPNVVTYSCLMNALCKKQKWKE 287

Query: 149 IPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILAT 208
              +L  M   KV P V  + +L    + +      +KV   M +   EPN V+Y  +  
Sbjct: 288 AAQMLDTMTGCKVRPDVVAYTVLADGLSKNGRASDAIKVLDLMVKRGEEPNNVTYNAIIN 347

Query: 209 AHAVARLYTVAETYVEALEKSMTGNN---WSTLDVLIILYGYLAKGKDLERIWATVQELP 265
                     A   +E + K     +   +STL   +   G + +  DL  +  + +   
Sbjct: 348 GLCKEGRVDDALGILETMAKKGKKPDVVTYSTLVKGLCGVGKIDEAVDLLNLLMSKEFHI 407

Query: 266 NVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASG 325
                ++ L I+   +  ++  A+ ++  M           YN +I  Y   G + KA  
Sbjct: 408 KPDVFAFNLVIQELCKQRRLRHAKRVYYTMVERGFPSNIVTYNILIDGYLSAGKLTKALE 467

Query: 326 LLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTL 385
           L K+   +G  PNA TY  L  G  K        + L +   L   K+   + P +    
Sbjct: 468 LWKDAVDSGISPNAATYTVLINGLCK-------MQMLSIAKGLFNKKRASGTRPTVSEYN 520

Query: 386 SIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKA 429
           +++     +  V  A NLF+E++ AN+      +N +I   +KA
Sbjct: 521 TLMASLCRESSVEQARNLFQEMRNANHDPDVVSFNIIIDGTLKA 564



 Score = 47.4 bits (111), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 64/311 (20%), Positives = 130/311 (41%), Gaps = 22/311 (7%)

Query: 125 GHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMK----IEANDHN 180
           G   + + +N +I      GR      IL  M      P V T+  L+K    +   D  
Sbjct: 334 GEEPNNVTYNAIINGLCKEGRVDDALGILETMAKKGKKPDVVTYSTLVKGLCGVGKIDEA 393

Query: 181 IEGLMKVYSDMKRSEVEPNEVSY-CILATAHAVARLYTVAETYVEALEKSMTGNNWSTLD 239
           ++ L  + S  K   ++P+  ++  ++       RL      Y   +E+    +N  T +
Sbjct: 394 VDLLNLLMS--KEFHIKPDVFAFNLVIQELCKQRRLRHAKRVYYTMVERGFP-SNIVTYN 450

Query: 240 VLIILYGYLAKGK---DLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQ 296
           +LI   GYL+ GK    LE     V    +  + +Y + I    ++  +S A+ L+ + +
Sbjct: 451 ILI--DGYLSAGKLTKALELWKDAVDSGISPNAATYTVLINGLCKMQMLSIAKGLFNKKR 508

Query: 297 SVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVE 356
           +        +YN++++  C+   +++A  L +EM      P+ +++  +  G  K+  VE
Sbjct: 509 ASGTRPTVSEYNTLMASLCRESSVEQARNLFQEMRNANHDPDVVSFNIIIDGTLKAGDVE 568

Query: 357 EGFKALELGMKLITTKKVRSSTPWLETTLSI-IEIFAEKGDVGNAENLFEELKKANYTKY 415
                     K +  + +  +      T SI I  F + G +  A +L+E +    +   
Sbjct: 569 SA--------KELLLEMLNMNLVPDNITFSILINRFLKLGQLDEAASLYERMVSCGHVPD 620

Query: 416 TFVYNTLIKAY 426
             ++++L+K Y
Sbjct: 621 AVLFDSLLKGY 631


>gi|357441365|ref|XP_003590960.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355480008|gb|AES61211.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 590

 Score = 72.4 bits (176), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 99/414 (23%), Positives = 163/414 (39%), Gaps = 78/414 (18%)

Query: 45  ALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQGEKLFCCIPKDYQNELLYNNLVIA 104
           AL VM+ ++++   +P  + Y+ L+E TI   GI +  KL         +E+L   L   
Sbjct: 200 ALRVMDQLLKDN-CKPTVITYTILIEATITQGGIDEAMKLL--------DEMLSRGLRP- 249

Query: 105 CLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPH 164
             D+    + +  M K  +L  +  +L                       ++  +     
Sbjct: 250 --DRYTYNVVVNGMCKEGMLDRAFEFL----------------------SRISKNGCVAG 285

Query: 165 VSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVE 224
           VST++IL++   N+   E   K+ SDM     EPN ++Y  L TA               
Sbjct: 286 VSTYNILLRDLLNEGKWEYGEKLMSDMLVKGCEPNPITYSTLITA--------------- 330

Query: 225 ALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQ 284
                            +   G + + K++ ++       P+    SY   I A  R  +
Sbjct: 331 -----------------LCRDGKIDEAKNVLKVMKEKALAPD--GYSYDPLISALCREGK 371

Query: 285 VSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRH 344
           V  A E   +M S   L     YNS+++  CKNG  D+A  + +++   GC PNA +Y  
Sbjct: 372 VDLAIEFLDDMISGGHLPDILSYNSILASLCKNGNADEALNIFEKLGEVGCPPNAGSYNT 431

Query: 345 LALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLF 404
           L    + S     G K   LGM  I         P   T  S+I      G V  A  L 
Sbjct: 432 LFGALWSS-----GDKIRALGM--ILEMLSNGIDPDEITYNSLISCLCRDGLVDQAIELL 484

Query: 405 EELKKANYTKYTFV-YNTLIKAYVKAK--INDPNLLRRMILGGARPDAETYSLL 455
            ++ ++   + T + YNT++    K +  I+   +L  M+  G  P+  TY+LL
Sbjct: 485 VDMFESEKCQPTVISYNTVLLGLCKVQRIIDAIEVLAAMVNEGCLPNETTYTLL 538


>gi|297607630|ref|NP_001060305.2| Os07g0621100 [Oryza sativa Japonica Group]
 gi|255677977|dbj|BAF22219.2| Os07g0621100 [Oryza sativa Japonica Group]
          Length = 734

 Score = 72.4 bits (176), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 96/423 (22%), Positives = 187/423 (44%), Gaps = 24/423 (5%)

Query: 44  RALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQGEKLFCCIPKD--YQNELLYNNL 101
           +A+E+M  +  E    P  + YS LL+   K+       K+F  + +     + ++Y  L
Sbjct: 168 KAVELMGEMC-ESGIEPNVVVYSSLLQGYCKSGRWEDVGKVFVEMSEKGIEPDVVMYTGL 226

Query: 102 VIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKV 161
           + +    G  K +   M  M   G   + + +N LI      G  K    +L++M    V
Sbjct: 227 IDSLCKVGKAKKAHGVMDMMVRRGLEPNVVTYNVLINCMCKEGSVKEAIGVLKKMSEKGV 286

Query: 162 APHVSTFHILMKIEANDHNIEGLMKVYSDMKRSE--VEPNEVSY-CILATAHAVARLYTV 218
           AP V T++ L+K  ++   ++  M +  +M R +  V+PN V++  ++     + R+   
Sbjct: 287 APDVVTYNTLIKGLSDVLEMDEAMWLLEEMVRGKNIVKPNVVTFNSVIQGLCDIGRMRQA 346

Query: 219 AETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNV----RSKSYVL 274
            +     +E++    N  T ++LI   G L +   + +    + E+ ++     S +Y +
Sbjct: 347 FQVRA-MMEETGCMVNLVTYNLLI---GGLLRVHKVRKAMELMDEMTSLGLEPDSFTYSI 402

Query: 275 AIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNG 334
            I+ F ++ QV RAE+L   M+          Y  ++   C+ G +++A  L  EM  N 
Sbjct: 403 LIKGFCKMWQVDRAEDLLSTMRDRGIEPELFHYIPLLVAMCEQGMMERARNLFNEMD-NN 461

Query: 335 CKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEK 394
              + + Y  +  G  K+         L+   +L+ +      TP   T   +I +FA+ 
Sbjct: 462 FPLDVVAYSTMIHGACKAG-------DLKTAKELLKSIVDEGLTPDAVTYSIVINMFAKS 514

Query: 395 GDVGNAENLFEELKKANYTKYTFVYNTLIKAY-VKAKINDP-NLLRRMILGGARPDAETY 452
           GD+  A  + +++  + +     V+++LI+ Y  K +IN    L+R MI      D++  
Sbjct: 515 GDMEAANGVLKQMTASGFLPDVAVFDSLIQGYSTKGEINKVLELIREMITKNIALDSKII 574

Query: 453 SLL 455
           S L
Sbjct: 575 STL 577



 Score = 60.1 bits (144), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 81/388 (20%), Positives = 161/388 (41%), Gaps = 55/388 (14%)

Query: 78  ISQGEKLFCCIPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGH------SISYL 131
           + +   L   +P   ++ + YN ++ A   +G    +   ++ M +  H      ++SY 
Sbjct: 61  LGEATSLLDALPS-VRDAVSYNTVLTALCRRGHHDRAGALLRAMSLEPHPACRPNAVSYT 119

Query: 132 VFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDM 191
           V  R +  +    +      +LR M++  V   V T+  L++   +   ++  +++  +M
Sbjct: 120 VLMRALCADRLADQ---AVGLLRSMRSAGVRADVVTYGTLIRGLCDAAEVDKAVELMGEM 176

Query: 192 KRSEVEPNEVSYCILATAHA-VARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAK 250
             S +EPN V Y  L   +    R   V + +VE  EK +  +        +++Y  L  
Sbjct: 177 CESGIEPNVVVYSSLLQGYCKSGRWEDVGKVFVEMSEKGIEPD--------VVMYTGL-- 226

Query: 251 GKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKA-TEQYNS 309
                                    I++  ++ +  +A  + ++M   + L+     YN 
Sbjct: 227 -------------------------IDSLCKVGKAKKAHGV-MDMMVRRGLEPNVVTYNV 260

Query: 310 VISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLI 369
           +I+  CK G + +A G+LK+MS  G  P+ +TY  L  G      ++E    LE   +++
Sbjct: 261 LINCMCKEGSVKEAIGVLKKMSEKGVAPDVVTYNTLIKGLSDVLEMDEAMWLLE---EMV 317

Query: 370 TTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKA 429
             K +    P + T  S+I+   + G +  A  +   +++         YN LI   ++ 
Sbjct: 318 RGKNI--VKPNVVTFNSVIQGLCDIGRMRQAFQVRAMMEETGCMVNLVTYNLLIGGLLRV 375

Query: 430 -KINDP-NLLRRMILGGARPDAETYSLL 455
            K+     L+  M   G  PD+ TYS+L
Sbjct: 376 HKVRKAMELMDEMTSLGLEPDSFTYSIL 403



 Score = 44.7 bits (104), Expect = 0.095,   Method: Compositional matrix adjust.
 Identities = 77/373 (20%), Positives = 151/373 (40%), Gaps = 16/373 (4%)

Query: 6   RGEPVGSAFQSWMREGFPVHRGEIFHSINRLRKLQLNKRALEVMEWVIRERPYRPKELDY 65
           R E VG  F     +G           I+ L K+   K+A  VM+ ++R R   P  + Y
Sbjct: 200 RWEDVGKVFVEMSEKGIEPDVVMYTGLIDSLCKVGKAKKAHGVMDMMVR-RGLEPNVVTY 258

Query: 66  SYLLEFTIKNHGISQGEKLFCCIPKD--YQNELLYNNLVIACLDKGVIKLSLEYMKKMRV 123
           + L+    K   + +   +   + +     + + YN L+    D   +  ++  +++M V
Sbjct: 259 NVLINCMCKEGSVKEAIGVLKKMSEKGVAPDVVTYNTLIKGLSDVLEMDEAMWLLEEM-V 317

Query: 124 LGHSI---SYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHN 180
            G +I   + + FN +I      GR +    +   M+      ++ T+++L+      H 
Sbjct: 318 RGKNIVKPNVVTFNSVIQGLCDIGRMRQAFQVRAMMEETGCMVNLVTYNLLIGGLLRVHK 377

Query: 181 IEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDV 240
           +   M++  +M    +EP+  +Y IL            AE  +  +     G        
Sbjct: 378 VRKAMELMDEMTSLGLEPDSFTYSILIKGFCKMWQVDRAEDLLSTMRDR--GIEPELFHY 435

Query: 241 LIILYGYLAKGKDLERIWATVQELPN---VRSKSYVLAIEAFGRIAQVSRAEELWLEMQS 297
           + +L     +G  +ER      E+ N   +   +Y   I    +   +  A+EL   +  
Sbjct: 436 IPLLVAMCEQGM-MERARNLFNEMDNNFPLDVVAYSTMIHGACKAGDLKTAKELLKSIVD 494

Query: 298 VKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEE 357
                    Y+ VI+++ K+G ++ A+G+LK+M+ +G  P+   +  L  G      +  
Sbjct: 495 EGLTPDAVTYSIVINMFAKSGDMEAANGVLKQMTASGFLPDVAVFDSLIQGYSTKGEIN- 553

Query: 358 GFKALELGMKLIT 370
             K LEL  ++IT
Sbjct: 554 --KVLELIREMIT 564


>gi|414872431|tpg|DAA50988.1| TPA: hypothetical protein ZEAMMB73_390723 [Zea mays]
          Length = 1627

 Score = 72.4 bits (176), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 82/368 (22%), Positives = 152/368 (41%), Gaps = 22/368 (5%)

Query: 98   YNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLV-FNRLIILNSSPGRRKTIPNILRQM 156
            YN+++I  + +G  +   +   +M   GH     V ++ LI      GRR +   +L +M
Sbjct: 1187 YNSMIIMLMHEGQYEKVHQLYNEMSTEGHCFPDTVTYSALISAFCKLGRRDSAIQLLNEM 1246

Query: 157  KADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLY 216
            K   + P    + +L+ +    ++  G + ++ +M+     P+  +Y  L     + +  
Sbjct: 1247 KEIGMQPTTKIYTMLIALFFKFNDAHGALSLFEEMRHQYCRPDVFTYTEL--IRGLGKAG 1304

Query: 217  TVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSKSYVLA- 275
             + E Y    E    G    T+  +  +  +L K   L+      QE+  +R    V+  
Sbjct: 1305 RIDEAYHFFCEMQREGCRPDTV-FMNNMINFLGKAGRLDDAMKLFQEMETLRCIPSVVTY 1363

Query: 276  ---IEAFGRIAQVSRAEEL--WLE-MQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKE 329
               I+A       SRA E+  W E M+      ++  Y+ +I  +CK   ++KA  LL+E
Sbjct: 1364 NTIIKAL--FESKSRASEVPSWFERMKESGISPSSFTYSILIDGFCKTNRMEKAMMLLEE 1421

Query: 330  MSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIE 389
            M   G  P    Y  L     K+       K  +L  +L    K    +        +I+
Sbjct: 1422 MDEKGFPPCPAAYCSLIDALGKA-------KRYDLACELFQELKENCGSSSARVYAVMIK 1474

Query: 390  IFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKINDPNL--LRRMILGGARP 447
               + G + +A N+F+E+ K       + YN L+    +  + D  L  +RRM   G  P
Sbjct: 1475 HLGKAGRLDDAINMFDEMNKLGCAPDVYAYNALMSGLARTGMLDEALSTMRRMQEHGCIP 1534

Query: 448  DAETYSLL 455
            D  +Y+++
Sbjct: 1535 DINSYNII 1542



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 68/379 (17%), Positives = 151/379 (39%), Gaps = 44/379 (11%)

Query: 53   IRERPYRPKELDYSYLLEFTIKNHGISQGEKLFCCIPKD--YQNELLYNNLVIACLDKGV 110
            +R +  RP    Y+ L+    K   I +    FC + ++    + +  NN++      G 
Sbjct: 1281 MRHQYCRPDVFTYTELIRGLGKAGRIDEAYHFFCEMQREGCRPDTVFMNNMINFLGKAGR 1340

Query: 111  IKLSLEYMKKMRVLGHSISYLVFNRLI-ILNSSPGRRKTIPNILRQMKADKVAPHVSTFH 169
            +  +++  ++M  L    S + +N +I  L  S  R   +P+   +MK   ++P   T+ 
Sbjct: 1341 LDDAMKLFQEMETLRCIPSVVTYNTIIKALFESKSRASEVPSWFERMKESGISPSSFTYS 1400

Query: 170  ILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKS 229
            IL+      + +E  M +  +M      P   +YC L  A   A+ Y +A    + L+++
Sbjct: 1401 ILIDGFCKTNRMEKAMMLLEEMDEKGFPPCPAAYCSLIDALGKAKRYDLACELFQELKEN 1460

Query: 230  MTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAE 289
               ++                                  ++ Y + I+  G+  ++  A 
Sbjct: 1461 CGSSS----------------------------------ARVYAVMIKHLGKAGRLDDAI 1486

Query: 290  ELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGC 349
             ++ EM  +        YN+++S   + G +D+A   ++ M  +GC P+  +Y  +  G 
Sbjct: 1487 NMFDEMNKLGCAPDVYAYNALMSGLARTGMLDEALSTMRRMQEHGCIPDINSYNIILNGL 1546

Query: 350  FKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKK 409
             K+             M++++  K  +  P + +  +++   +  G    A  L +E+  
Sbjct: 1547 AKTG-------GPHRAMEMLSNMKQSTVRPDVVSYNTVLGALSHAGMFEEASKLMKEMNT 1599

Query: 410  ANYTKYTFVYNTLIKAYVK 428
              +      Y+++++A  K
Sbjct: 1600 LGFEYDLITYSSILEAIGK 1618



 Score = 49.3 bits (116), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 52/206 (25%), Positives = 87/206 (42%), Gaps = 27/206 (13%)

Query: 257  IWATVQELPNVRSKSYVLA-------IEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNS 309
            +W  +QE+  VR+   V+        +   G    V +A  ++ ++++ K     + YNS
Sbjct: 1132 MWKMIQEM--VRNPICVVTPTELSDVVRMLGNAKMVRQAITIFYQIKTRKCQPIAQAYNS 1189

Query: 310  VISVYCKNGFIDKASGLLKEMSMNG-CKPNAITYRHLALGCFKSNLVEEGFKAL----EL 364
            +I +    G  +K   L  EMS  G C P+ +TY  L     K    +   + L    E+
Sbjct: 1190 MIIMLMHEGQYEKVHQLYNEMSTEGHCFPDTVTYSALISAFCKLGRRDSAIQLLNEMKEI 1249

Query: 365  GMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIK 424
            GM+           P  +    +I +F +  D   A +LFEE++        F Y  LI+
Sbjct: 1250 GMQ-----------PTTKIYTMLIALFFKFNDAHGALSLFEEMRHQYCRPDVFTYTELIR 1298

Query: 425  AYVKA-KINDP-NLLRRMILGGARPD 448
               KA +I++  +    M   G RPD
Sbjct: 1299 GLGKAGRIDEAYHFFCEMQREGCRPD 1324



 Score = 47.8 bits (112), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 61/282 (21%), Positives = 121/282 (42%), Gaps = 21/282 (7%)

Query: 181  IEGLMKVYSDMKRSEVEPNEVSY--CILATAHAVARLYTVAETYVEALEKSMTGNNWSTL 238
            ++  MK++ +M+     P+ V+Y   I A   + +R   V  ++ E +++S  G + S+ 
Sbjct: 1341 LDDAMKLFQEMETLRCIPSVVTYNTIIKALFESKSRASEVP-SWFERMKES--GISPSSF 1397

Query: 239  DVLIILYGYLAKGKDLERIWATVQEL-----PNVRSKSYVLAIEAFGRIAQVSRAEELWL 293
               I++ G+  K   +E+    ++E+     P   + +Y   I+A G+  +   A EL+ 
Sbjct: 1398 TYSILIDGF-CKTNRMEKAMMLLEEMDEKGFPPCPA-AYCSLIDALGKAKRYDLACELFQ 1455

Query: 294  EMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSN 353
            E++      +   Y  +I    K G +D A  +  EM+  GC P+   Y  L  G  ++ 
Sbjct: 1456 ELKENCGSSSARVYAVMIKHLGKAGRLDDAINMFDEMNKLGCAPDVYAYNALMSGLARTG 1515

Query: 354  LVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYT 413
            +++E    +          +     P + +   I+   A+ G    A  +   +K++   
Sbjct: 1516 MLDEALSTMR-------RMQEHGCIPDINSYNIILNGLAKTGGPHRAMEMLSNMKQSTVR 1568

Query: 414  KYTFVYNTLIKAYVKAKIND--PNLLRRMILGGARPDAETYS 453
                 YNT++ A   A + +    L++ M   G   D  TYS
Sbjct: 1569 PDVVSYNTVLGALSHAGMFEEASKLMKEMNTLGFEYDLITYS 1610


>gi|358347568|ref|XP_003637828.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355503763|gb|AES84966.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 529

 Score = 72.4 bits (176), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 90/376 (23%), Positives = 158/376 (42%), Gaps = 41/376 (10%)

Query: 105 CLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPH 164
           CL KG I  +L +  K+   G  ++ + +  LI      G+ +     LR++    V P 
Sbjct: 93  CL-KGEIHKALHFHDKVVAQGFKLNQVSYGTLINGLCKVGQTRAALEFLRRIDGKLVQPD 151

Query: 165 VSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSY-------CILAT-AHAVARLY 216
           V  ++ ++     D  +     +Y +M    + P+ V+Y       CI+A    A+  L+
Sbjct: 152 VVMYNTIIDGLCKDKLVNDAFNLYFEMVAKRICPSVVTYNTLICGLCIMAQLKDAIGLLH 211

Query: 217 TVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQE---LPNVRSKSYV 273
              +  +E +  ++      T  +LI  +    K K+ + ++A + +    PN+ + + +
Sbjct: 212 ---KMILEDINPTVY-----TFSILIDAFCKEGKMKEAKNVFAVMMKEDVKPNIVTYNSL 263

Query: 274 L-----------AIEAFGR-IAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFID 321
           +           A   F   I  V  A  L+ EM   +       YNS+I   CK+G   
Sbjct: 264 MDGHHLVNVVKKAKSIFNTMIKMVDEAMNLFEEMHFKQIYPDMVIYNSLIDGLCKSGRTP 323

Query: 322 KASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWL 381
            A   + EM   G  P+  TY  L     K+  V+   KA+EL  KL    K +   P +
Sbjct: 324 YALKFIGEMHYRGQPPDIFTYNSLLDALCKNYHVD---KAIELLTKL----KDQGIQPSV 376

Query: 382 ETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKINDPNL--LRR 439
            T   +I    + G + +AE +FE+L    Y    + YN +IK + K  + D  L  + +
Sbjct: 377 CTYNILINGLCKSGRLKDAEKVFEDLLVKGYNTDVYTYNAMIKGFCKKGLFDETLAMVSK 436

Query: 440 MILGGARPDAETYSLL 455
           M   G  PDA+   ++
Sbjct: 437 MKDSGCSPDAKNCEII 452


>gi|410110093|gb|AFV61126.1| pentatricopeptide repeat-containing protein 123, partial [Lantana
           microcephala]
          Length = 440

 Score = 72.4 bits (176), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 74/322 (22%), Positives = 148/322 (45%), Gaps = 22/322 (6%)

Query: 98  YNNLVIACLDKGVIKLSLEYMKKM---RVLGHSISYLVFNRLIILNSSPGRRKTIPNILR 154
           Y+ L+     +G+   +L +++KM   RV G  + Y   + LI L+          +I  
Sbjct: 18  YSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLY---SNLIELSRKLCDYSKAISIFS 74

Query: 155 QMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVAR 214
           ++K     P +  ++ ++ +            +  +MK + V PN  SY  L T +   +
Sbjct: 75  RLKRSGFTPDLVAYNAMINVFGKAKLFREARSLIGEMKAAGVMPNTASYSTLLTMYVENK 134

Query: 215 LYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQEL---PNVRSKS 271
            +  A +    + +     + +T +++I +YG L   K+ ++++  ++++   PNV S +
Sbjct: 135 KFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYN 194

Query: 272 YVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMS 331
            +L +  +G       A  L+  MQ     +    YNS++ +Y K    +KA+ L++EM 
Sbjct: 195 TLLRV--YGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQ 252

Query: 332 MNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTL--SIIE 389
             G +PN+ITY         S ++    K  +L    +  +K+RSS   ++  L  ++I 
Sbjct: 253 SRGIEPNSITY---------STIISIWGKVGKLDRAAMLFQKLRSSGIEIDQILFQTMIV 303

Query: 390 IFAEKGDVGNAENLFEELKKAN 411
            +   G V +A+ L  ELK+ +
Sbjct: 304 AYERAGLVAHAKRLLHELKRPD 325



 Score = 43.9 bits (102), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 53/247 (21%), Positives = 99/247 (40%), Gaps = 45/247 (18%)

Query: 187 VYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYG 246
           ++ +M++  + P+  +Y  L T      L+  A ++++ +E+     +       ++LY 
Sbjct: 2   LFDEMRQRALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGD-------LVLYS 54

Query: 247 YLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQ 306
            L    +L R           +   Y  AI  F R+ +     +L               
Sbjct: 55  NLI---ELSR-----------KLCDYSKAISIFSRLKRSGFTPDLV-------------A 87

Query: 307 YNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGM 366
           YN++I+V+ K     +A  L+ EM   G  PN  +Y  L        +  E  K LE   
Sbjct: 88  YNAMINVFGKAKLFREARSLIGEMKAAGVMPNTASYSTLL------TMYVENKKFLE--- 138

Query: 367 KLITTKKVRSSTPWLETTLS--IIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIK 424
            L    ++R     L+ T    +I+++ + G    A+ LF  ++K         YNTL++
Sbjct: 139 ALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTLLR 198

Query: 425 AYVKAKI 431
            Y  A++
Sbjct: 199 VYGDAEL 205



 Score = 39.7 bits (91), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 35/134 (26%), Positives = 55/134 (41%), Gaps = 11/134 (8%)

Query: 325 GLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPW-LET 383
           GL  EM      P+  TY  L     K  L +     L+        K  +   P  L  
Sbjct: 1   GLFDEMRQRALSPDRYTYSTLITHFGKEGLFDAALSWLQ--------KMEQDRVPGDLVL 52

Query: 384 TLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKI--NDPNLLRRMI 441
             ++IE+  +  D   A ++F  LK++ +T     YN +I  + KAK+     +L+  M 
Sbjct: 53  YSNLIELSRKLCDYSKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLIGEMK 112

Query: 442 LGGARPDAETYSLL 455
             G  P+  +YS L
Sbjct: 113 AAGVMPNTASYSTL 126


>gi|225462201|ref|XP_002269984.1| PREDICTED: pentatricopeptide repeat-containing protein At1g79080,
           chloroplastic [Vitis vinifera]
 gi|147852271|emb|CAN82234.1| hypothetical protein VITISV_038804 [Vitis vinifera]
          Length = 567

 Score = 72.0 bits (175), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 98/442 (22%), Positives = 177/442 (40%), Gaps = 41/442 (9%)

Query: 35  RLRKLQLNKRALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQGEKLF------CCI 88
           R R L+LN  A   +E++I  + ++P     + L+    K++ + +  K+          
Sbjct: 72  RTRDLRLND-AFLYLEYMIG-KGHKPDGGQATQLMYELCKSNKMRKATKVMELMIGSGTT 129

Query: 89  PKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKT 148
           P       L NNL      +G +  +++ ++KM   G+  + + +N L+      G    
Sbjct: 130 PDPASCTFLVNNLC----KRGNVGYAMQLVEKMEEYGYPTNTVTYNSLVRGLCMHGNLSQ 185

Query: 149 IPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILAT 208
              IL +     + P+V T+  L++    +   +  +++  ++     +PN VSY +L T
Sbjct: 186 SLQILDKFMKKGLVPNVFTYSFLLEAAYKERGADEAIRLLDEIVAKGGKPNLVSYNVLLT 245

Query: 209 AHAV-ARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQEL--- 264
                 R     + + +   K  + N        ++ Y  L +    E  W   +EL   
Sbjct: 246 GLCKEGRTEEAMQFFRDLPSKGFSPN--------VVSYNILLRSLCYEGRWEKAKELLAE 297

Query: 265 --PNVRSKSYVLAIEAFGRIA---QVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGF 319
                RS S V      G +A   Q  +A E+  +M   +       YN +I+  CK G 
Sbjct: 298 MDGGERSPSIVTFNILIGSLALHGQTDQALEVLDDMSRARFKATAASYNPIIARLCKEGK 357

Query: 320 IDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALE-LGMKLITTKKVRSST 378
           +D     L +M    C PN  TY  +A+ C +   V+E F  ++ LG       K  SST
Sbjct: 358 VDLVVKCLDQMMYRRCNPNEGTYNAIAVLC-EEGKVQEAFSIIQSLG------NKQNSST 410

Query: 379 PWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKINDP--NL 436
              +    +I     KG+   A  L  E+ K  +   ++ Y++LI+      + D    +
Sbjct: 411 H--DFYKGVISSLCRKGNTYPAFQLLYEMTKYGFVPDSYTYSSLIRGLCSEGMLDEAMEI 468

Query: 437 LRRMILGGARPDAETYSLLKLA 458
              M     RPD + ++ L L 
Sbjct: 469 FSIMEENYCRPDVDNFNALILG 490



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 74/309 (23%), Positives = 135/309 (43%), Gaps = 23/309 (7%)

Query: 60  PKELDYSYLLEFTIKNHGISQGEKLFCCI--PKDYQNELLYNNLVIACLDKGVIKLSLEY 117
           P    YS+LLE   K  G  +  +L   I       N + YN L+     +G  + ++++
Sbjct: 200 PNVFTYSFLLEAAYKERGADEAIRLLDEIVAKGGKPNLVSYNVLLTGLCKEGRTEEAMQF 259

Query: 118 MKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEAN 177
            + +   G S + + +N L+      GR +    +L +M   + +P + TF+IL+   A 
Sbjct: 260 FRDLPSKGFSPNVVSYNILLRSLCYEGRWEKAKELLAEMDGGERSPSIVTFNILIGSLAL 319

Query: 178 DHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVA--ETYVEALEKSM---TG 232
               +  ++V  DM R+  +    SY  +     +ARL      +  V+ L++ M     
Sbjct: 320 HGQTDQALEVLDDMSRARFKATAASYNPI-----IARLCKEGKVDLVVKCLDQMMYRRCN 374

Query: 233 NNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSKS----YVLAIEAFGRIAQVSRA 288
            N  T + + +L     +GK ++  ++ +Q L N ++ S    Y   I +  R      A
Sbjct: 375 PNEGTYNAIAVL---CEEGK-VQEAFSIIQSLGNKQNSSTHDFYKGVISSLCRKGNTYPA 430

Query: 289 EELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALG 348
            +L  EM     +  +  Y+S+I   C  G +D+A  +   M  N C+P+   +  L LG
Sbjct: 431 FQLLYEMTKYGFVPDSYTYSSLIRGLCSEGMLDEAMEIFSIMEENYCRPDVDNFNALILG 490

Query: 349 ---CFKSNL 354
              C K++L
Sbjct: 491 LCKCRKTDL 499


>gi|413915825|gb|AFW21589.1| hypothetical protein ZEAMMB73_481763 [Zea mays]
 gi|413923991|gb|AFW63923.1| hypothetical protein ZEAMMB73_685382 [Zea mays]
          Length = 953

 Score = 72.0 bits (175), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 92/399 (23%), Positives = 163/399 (40%), Gaps = 71/399 (17%)

Query: 74  KNHGISQGEKLFCCIPKDY-QNELLYNNLVIACLDKGVIKL-----SLEYMKKMRVLGHS 127
           KN  I + E LF    KD  +  LL +++  A L  G+ K      +L+  +++     S
Sbjct: 516 KNGNIEEAEALF----KDMGERGLLLDHVNYATLMDGLFKTGNMPAALKVGQELMERNLS 571

Query: 128 ISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKV 187
              +V+N  I      G+     + L++M+   + P  +T++ ++  +  + N    +K+
Sbjct: 572 PDAVVYNVFINCLCRLGKFSEAKSFLKEMRNTGLEPDQATYNTMISAQCREGNTSKALKL 631

Query: 188 YSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGY 247
            ++MK S ++PN ++Y                                +TL V ++  G 
Sbjct: 632 LNEMKWSSIKPNLITY--------------------------------TTLVVGLLEAGV 659

Query: 248 LAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQ- 306
           + K K L    A+    P   +   VL      +    SR+  + LE+  +         
Sbjct: 660 VEKAKYLLNEMASAGFTPTPLTYRRVL------QACSGSRSPYVILEVHELMMGAGLHAD 713

Query: 307 ---YNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGF---- 359
              YN+++ V C +G   KA+ +L EM   G  P+ IT+  L LG  KS+ ++  F    
Sbjct: 714 ITVYNTLVHVLCCHGMTRKATIVLDEMLGRGIAPDTITFNALILGHCKSSHLDNAFATYA 773

Query: 360 KALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVY 419
           + L  G+           +P + T  +++      G +G A+ +  E+KK         Y
Sbjct: 774 QMLHQGL-----------SPNIATFNTLLGGLESAGRIGEADTVICEMKKMGLEPNNLTY 822

Query: 420 NTLIKAYVKAKINDPNLLR---RMILGGARPDAETYSLL 455
           + L+  Y K K N    LR    M+  G  P A TY+ L
Sbjct: 823 DILVTGYAK-KSNKVEALRLYCEMVSKGFIPKASTYNSL 860



 Score = 65.9 bits (159), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 86/329 (26%), Positives = 134/329 (40%), Gaps = 50/329 (15%)

Query: 153 LRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAV 212
           +R+MK   +AP+V T+  L+         E  + VY DM    VE N  ++ + +  + +
Sbjct: 457 MRKMKDSGIAPNVVTYGTLIDGFFKCQGQEAALDVYRDMLHEGVEAN--NFIVDSLVNGL 514

Query: 213 ARLYTVAETYVEALEKSMTGNNWSTLDVL--IILYGYLAKGKDLERIWATVQEL--PNVR 268
            +   + E   EAL K M G     LD +    L   L K  ++       QEL   N+ 
Sbjct: 515 RKNGNIEEA--EALFKDM-GERGLLLDHVNYATLMDGLFKTGNMPAALKVGQELMERNLS 571

Query: 269 SKS--YVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGL 326
             +  Y + I    R+ + S A+    EM++         YN++IS  C+ G   KA  L
Sbjct: 572 PDAVVYNVFINCLCRLGKFSEAKSFLKEMRNTGLEPDQATYNTMISAQCREGNTSKALKL 631

Query: 327 LKEMSMNGCKPNAITYRHLALGCFKSNLVEE-----------GFKALELGMKLITTKKVR 375
           L EM  +  KPN ITY  L +G  ++ +VE+           GF    L  + +      
Sbjct: 632 LNEMKWSSIKPNLITYTTLVVGLLEAGVVEKAKYLLNEMASAGFTPTPLTYRRVLQACSG 691

Query: 376 SSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYV------KA 429
           S +P++     I+E+              E +  A       VYNTL+          KA
Sbjct: 692 SRSPYV-----ILEV-------------HELMMGAGLHADITVYNTLVHVLCCHGMTRKA 733

Query: 430 KINDPNLLRRMILGGARPDAETYSLLKLA 458
            I    +L  M+  G  PD  T++ L L 
Sbjct: 734 TI----VLDEMLGRGIAPDTITFNALILG 758



 Score = 65.5 bits (158), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 82/364 (22%), Positives = 153/364 (42%), Gaps = 16/364 (4%)

Query: 98  YNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMK 157
           YN LV      G    + E  ++M+  G   S +    LI       R +    +   M 
Sbjct: 227 YNTLVAGFFYSGDADAAWEVAERMKADGVEPSVVTHTTLIGEYCKMKRIEEAFTLYEGMV 286

Query: 158 ADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHA-VARLY 216
              V P V T   L+     D        ++ +M +  V PN V+YC    + A V R+ 
Sbjct: 287 RSGVLPDVVTLSALVDGLCRDGRFSEAYALFREMDKIGVAPNHVTYCTFIDSLAKVQRVN 346

Query: 217 TVAETYVEALEKSMTGN--NWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSKSYVL 274
                  E + + +  +   ++T+   +   G + + KD+ R   +    PN    +Y +
Sbjct: 347 ESLGLLGEMVSRGVAMDLVMYTTVMDRLGKEGKIEEAKDVLRHALSDNITPNC--VTYTV 404

Query: 275 AIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNG 334
            ++A  R   +  AE++ L+M+          ++S+++   K G I KA+G +++M  +G
Sbjct: 405 LVDAHCRAGNIDGAEQMLLQMEEKSVSPNVVTFSSILNGLVKRGCIAKAAGYMRKMKDSG 464

Query: 335 CKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEK 394
             PN +TY  L  G FK    E    AL++   ++  + V ++   ++   S++    + 
Sbjct: 465 IAPNVVTYGTLIDGFFKCQGQE---AALDVYRDML-HEGVEANNFIVD---SLVNGLRKN 517

Query: 395 GDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKINDPNLLR---RMILGGARPDAET 451
           G++  AE LF+++ +         Y TL+    K   N P  L+    ++     PDA  
Sbjct: 518 GNIEEAEALFKDMGERGLLLDHVNYATLMDGLFKTG-NMPAALKVGQELMERNLSPDAVV 576

Query: 452 YSLL 455
           Y++ 
Sbjct: 577 YNVF 580



 Score = 55.5 bits (132), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 67/353 (18%), Positives = 136/353 (38%), Gaps = 53/353 (15%)

Query: 114 SLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMK 173
           SL  + +M   G ++  +++  ++      G+ +   ++LR   +D + P+  T+ +L+ 
Sbjct: 348 SLGLLGEMVSRGVAMDLVMYTTVMDRLGKEGKIEEAKDVLRHALSDNITPNCVTYTVLVD 407

Query: 174 IEANDHNIEGLMKVYSDMKRSEVEPNEVSY-----------CILATAHAVARLYTVA--- 219
                 NI+G  ++   M+   V PN V++           CI   A  + ++       
Sbjct: 408 AHCRAGNIDGAEQMLLQMEEKSVSPNVVTFSSILNGLVKRGCIAKAAGYMRKMKDSGIAP 467

Query: 220 ----------------------ETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERI 257
                                 + Y + L + +  NN+    ++  L   L K  ++E  
Sbjct: 468 NVVTYGTLIDGFFKCQGQEAALDVYRDMLHEGVEANNF----IVDSLVNGLRKNGNIEEA 523

Query: 258 WATVQELPN----VRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISV 313
            A  +++      +   +Y   ++   +   +  A ++  E+           YN  I+ 
Sbjct: 524 EALFKDMGERGLLLDHVNYATLMDGLFKTGNMPAALKVGQELMERNLSPDAVVYNVFINC 583

Query: 314 YCKNGFIDKASGLLKEMSMNGCKPNAITYRHL-ALGCFKSNLVEEGFKALELGMKLITTK 372
            C+ G   +A   LKEM   G +P+  TY  + +  C + N  +         +KL+   
Sbjct: 584 LCRLGKFSEAKSFLKEMRNTGLEPDQATYNTMISAQCREGNTSK--------ALKLLNEM 635

Query: 373 KVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKA 425
           K  S  P L T  +++    E G V  A+ L  E+  A +T     Y  +++A
Sbjct: 636 KWSSIKPNLITYTTLVVGLLEAGVVEKAKYLLNEMASAGFTPTPLTYRRVLQA 688



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 94/433 (21%), Positives = 178/433 (41%), Gaps = 41/433 (9%)

Query: 14  FQSWMREGFPVHRGEIFHSINRLRKLQLNKRALEVMEWVIRERPYRPKELDYSYLLEFTI 73
           ++  + EG   +   +   +N LRK   N    E +   + ER      ++Y+ L++   
Sbjct: 492 YRDMLHEGVEANNFIVDSLVNGLRK-NGNIEEAEALFKDMGERGLLLDHVNYATLMDGLF 550

Query: 74  KNHGISQ----GEKLFCCIPKDYQNELLYNNLVIACLDK-GVIKLSLEYMKKMRVLGHSI 128
           K   +      G++L   + ++   + +  N+ I CL + G    +  ++K+MR  G   
Sbjct: 551 KTGNMPAALKVGQEL---MERNLSPDAVVYNVFINCLCRLGKFSEAKSFLKEMRNTGLEP 607

Query: 129 SYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVY 188
               +N +I      G       +L +MK   + P++ T+  L+        +E    + 
Sbjct: 608 DQATYNTMISAQCREGNTSKALKLLNEMKWSSIKPNLITYTTLVVGLLEAGVVEKAKYLL 667

Query: 189 SDMKRSEVEPNEVSYCILATAHAVARL-YTVAETYVEALEKSMTGN--NWSTLDVLIILY 245
           ++M  +   P  ++Y  +  A + +R  Y + E +   +   +  +   ++TL  ++  +
Sbjct: 668 NEMASAGFTPTPLTYRRVLQACSGSRSPYVILEVHELMMGAGLHADITVYNTLVHVLCCH 727

Query: 246 GYLAK---------GKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQ 296
           G   K         G+ +     T   L     KS  L   AF   AQ+          Q
Sbjct: 728 GMTRKATIVLDEMLGRGIAPDTITFNALILGHCKSSHLD-NAFATYAQMLH--------Q 778

Query: 297 SVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALG-CFKSNLV 355
            +    AT  +N+++      G I +A  ++ EM   G +PN +TY  L  G   KSN V
Sbjct: 779 GLSPNIAT--FNTLLGGLESAGRIGEADTVICEMKKMGLEPNNLTYDILVTGYAKKSNKV 836

Query: 356 EEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKY 415
           E    AL L  ++++    +   P   T  S+I  FA+ G +  A+ LF E+K+      
Sbjct: 837 E----ALRLYCEMVS----KGFIPKASTYNSLISDFAKAGMMNQAKELFSEMKRRGVLHT 888

Query: 416 TFVYNTLIKAYVK 428
           +  Y+ L+  + K
Sbjct: 889 SSTYDILLNGWSK 901



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 60/273 (21%), Positives = 115/273 (42%), Gaps = 9/273 (3%)

Query: 96  LLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQ 155
           L Y  ++ AC       + LE  + M   G      V+N L+ +    G  +    +L +
Sbjct: 680 LTYRRVLQACSGSRSPYVILEVHELMMGAGLHADITVYNTLVHVLCCHGMTRKATIVLDE 739

Query: 156 MKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARL 215
           M    +AP   TF+ L+       +++     Y+ M    + PN  ++  L      A  
Sbjct: 740 MLGRGIAPDTITFNALILGHCKSSHLDNAFATYAQMLHQGLSPNIATFNTLLGGLESAGR 799

Query: 216 YTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLE--RIWATVQE---LPNVRSK 270
              A+T +  ++K     N  T D+L+   GY  K   +E  R++  +     +P  ++ 
Sbjct: 800 IGEADTVICEMKKMGLEPNNLTYDILVT--GYAKKSNKVEALRLYCEMVSKGFIP--KAS 855

Query: 271 SYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEM 330
           +Y   I  F +   +++A+EL+ EM+    L  +  Y+ +++ + K     +   LLK+M
Sbjct: 856 TYNSLISDFAKAGMMNQAKELFSEMKRRGVLHTSSTYDILLNGWSKLRNGTEVRILLKDM 915

Query: 331 SMNGCKPNAITYRHLALGCFKSNLVEEGFKALE 363
              G KP+  T   ++    K  +  E  + L+
Sbjct: 916 KELGFKPSKGTISSMSRAFSKPGMTWEARRLLK 948


>gi|255661210|gb|ACU25774.1| pentatricopeptide repeat-containing protein [Stachytarpheta
           cayennensis]
          Length = 426

 Score = 72.0 bits (175), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 74/322 (22%), Positives = 152/322 (47%), Gaps = 22/322 (6%)

Query: 98  YNNLVIACLDKGVIKLSLEYMKKM---RVLGHSISYLVFNRLIILNSSPGRRKTIPNILR 154
           Y+ L+     +G+   +L +++KM   RV G  + Y   + LI L+          +I  
Sbjct: 12  YSTLITHFGKEGLFDDALSWLQKMEQDRVPGDLVLY---SNLIELSRKLCDYSKAISIFS 68

Query: 155 QMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVAR 214
           ++K   + P +  ++ ++ +            + S+M+ + V P+ VSY  L T +   +
Sbjct: 69  RLKRAGITPDLVAYNSMINVFGKAKLFREARSLISEMREAGVVPDTVSYSTLLTMYVENQ 128

Query: 215 LYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQEL---PNVRSKS 271
            +  A +    + +     + +T +++I +YG L   K+ ++++ +++++   PNV S +
Sbjct: 129 KFLEALSVFAEMREIKCLVDLTTCNIMIDVYGQLDMAKEADKLFWSMRKVGIEPNVVSYN 188

Query: 272 YVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMS 331
            +L +  +G       A  L+  MQ     +    YN+++ +Y K    +KA+ L++EM 
Sbjct: 189 TLLRV--YGDAELFGEAIHLFRLMQRKDIEQNVVTYNTMMMIYGKTLEHEKANNLIQEMH 246

Query: 332 MNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTL--SIIE 389
             G +PNAITY         S ++    K  +L    +  +K+RSS   ++  L  ++I 
Sbjct: 247 NRGIEPNAITY---------STIISIWGKVGKLDRAAMLFQKLRSSGVEIDHVLYQTMIV 297

Query: 390 IFAEKGDVGNAENLFEELKKAN 411
            +   G V +A+ L  ELK+ +
Sbjct: 298 AYERAGLVAHAKRLLHELKRPD 319



 Score = 51.6 bits (122), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 62/287 (21%), Positives = 133/287 (46%), Gaps = 28/287 (9%)

Query: 151 NILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAH 210
           ++  +M+  K    ++T +I++ +       +   K++  M++  +EPN VSY  L   +
Sbjct: 135 SVFAEMREIKCLVDLTTCNIMIDVYGQLDMAKEADKLFWSMRKVGIEPNVVSYNTLLRVY 194

Query: 211 AVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQEL------ 264
             A L+  A      +++     N  T + ++++YG   K  + E+    +QE+      
Sbjct: 195 GDAELFGEAIHLFRLMQRKDIEQNVVTYNTMMMIYG---KTLEHEKANNLIQEMHNRGIE 251

Query: 265 PNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKAS 324
           PN  + S +++I  +G++ ++ RA  L+ +++S         Y ++I  Y + G +  A 
Sbjct: 252 PNAITYSTIISI--WGKVGKLDRAAMLFQKLRSSGVEIDHVLYQTMIVAYERAGLVAHAK 309

Query: 325 GLLKEMSMNGCKPNAI---TYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWL 381
            LL E+     +P+ I   T  H+  G  +   +EE   A  +  + I   +V+  T + 
Sbjct: 310 RLLHELK----RPDNIPRDTAIHILAGAGR---IEE---ATWVFRQAIDAGEVKDITVFE 359

Query: 382 ETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVK 428
                +I++F++     N   +FE+++   Y   + V + ++ AY K
Sbjct: 360 R----MIDLFSKYKKYPNVVEVFEKMRGLGYFPDSNVISLVLNAYGK 402



 Score = 41.6 bits (96), Expect = 0.84,   Method: Compositional matrix adjust.
 Identities = 40/179 (22%), Positives = 78/179 (43%), Gaps = 30/179 (16%)

Query: 307 YNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHL------------ALGCFKS-- 352
           YNS+I+V+ K     +A  L+ EM   G  P+ ++Y  L            AL  F    
Sbjct: 82  YNSMINVFGKAKLFREARSLISEMREAGVVPDTVSYSTLLTMYVENQKFLEALSVFAEMR 141

Query: 353 -----------NLVEEGFKALELGM---KLITTKKVRSSTPWLETTLSIIEIFAEKGDVG 398
                      N++ + +  L++     KL  + +     P + +  +++ ++ +    G
Sbjct: 142 EIKCLVDLTTCNIMIDVYGQLDMAKEADKLFWSMRKVGIEPNVVSYNTLLRVYGDAELFG 201

Query: 399 NAENLFEELKKANYTKYTFVYNTLIKAYVKAKINDP--NLLRRMILGGARPDAETYSLL 455
            A +LF  +++ +  +    YNT++  Y K   ++   NL++ M   G  P+A TYS +
Sbjct: 202 EAIHLFRLMQRKDIEQNVVTYNTMMMIYGKTLEHEKANNLIQEMHNRGIEPNAITYSTI 260


>gi|255558280|ref|XP_002520167.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223540659|gb|EEF42222.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 604

 Score = 72.0 bits (175), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 83/375 (22%), Positives = 157/375 (41%), Gaps = 20/375 (5%)

Query: 87  CIPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRR 146
           CIP    + + Y  ++      G ++  ++ +K+M++ G   +   ++ +I+L    G+ 
Sbjct: 141 CIP----DVVSYTTIIDGYCHVGELQKVVQLVKEMQLKGLKPNLYTYSSIILLLCKSGKV 196

Query: 147 KTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCIL 206
                +LR+M    V P    +  L+       N +   K++S+M+  E+ P+ +++  L
Sbjct: 197 VEGEKVLREMMKRGVFPDHVIYTTLIDGFCKLGNTQAAYKLFSEMEAREIVPDSIAFSAL 256

Query: 207 ATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILY---GYLAKGKDLERIWATVQE 263
               + +     A+     + K     +  T   LI  Y   G + K   L      +  
Sbjct: 257 ICGLSGSGKVVEADKLFNEMIKKGFEPDEVTYTALIDGYCKLGEMKKAFFLHNQMVQIGL 316

Query: 264 LPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKA 323
            PNV +  Y    +   +  ++  A EL  EM           YN++++  CK G I +A
Sbjct: 317 TPNVVT--YTALADGLCKSGELDTANELLHEMCRKGLQLNISTYNTIVNGLCKAGNILQA 374

Query: 324 SGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLET 383
             L++EM   G  P+ ITY  L    +K+    E  KA EL  +++     R   P + T
Sbjct: 375 VKLMEEMKEAGLHPDTITYTTLMDAYYKTG---EMVKARELLREMLD----RGLQPTVVT 427

Query: 384 TLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYV---KAKINDPNLLRRM 440
              ++      G + + E L + + +         YN+++K Y      +I+   + R M
Sbjct: 428 FNVLMNGLCMSGKLEDGERLLKWMLEKGIMPNAATYNSIMKQYCIRNNMRIS-TEIYRGM 486

Query: 441 ILGGARPDAETYSLL 455
              G  PD+ TY++L
Sbjct: 487 CAQGVVPDSNTYNIL 501



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 52/189 (27%), Positives = 82/189 (43%), Gaps = 9/189 (4%)

Query: 269 SKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLK 328
           ++SY + + +  R+ ++  A  L + M+    +     Y ++I  YC  G + K   L+K
Sbjct: 110 TESYNILMNSLFRLGKIREAHHLLMRMEFKGCIPDVVSYTTIIDGYCHVGELQKVVQLVK 169

Query: 329 EMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSII 388
           EM + G KPN  TY  + L   KS  V EG K L   MK       R   P      ++I
Sbjct: 170 EMQLKGLKPNLYTYSSIILLLCKSGKVVEGEKVLREMMK-------RGVFPDHVIYTTLI 222

Query: 389 EIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAK--INDPNLLRRMILGGAR 446
           + F + G+   A  LF E++       +  ++ LI     +   +    L   MI  G  
Sbjct: 223 DGFCKLGNTQAAYKLFSEMEAREIVPDSIAFSALICGLSGSGKVVEADKLFNEMIKKGFE 282

Query: 447 PDAETYSLL 455
           PD  TY+ L
Sbjct: 283 PDEVTYTAL 291



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 86/442 (19%), Positives = 171/442 (38%), Gaps = 36/442 (8%)

Query: 24  VHRGEIFHSINRLRKLQLNKRALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQGEK 83
            H GE+   +  ++++QL              +  +P    YS ++    K+  + +GEK
Sbjct: 156 CHVGELQKVVQLVKEMQL--------------KGLKPNLYTYSSIILLLCKSGKVVEGEK 201

Query: 84  LFCCIPKD--YQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNS 141
           +   + K   + + ++Y  L+      G  + + +   +M         + F+ LI   S
Sbjct: 202 VLREMMKRGVFPDHVIYTTLIDGFCKLGNTQAAYKLFSEMEAREIVPDSIAFSALICGLS 261

Query: 142 SPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEV 201
             G+      +  +M      P   T+  L+        ++    +++ M +  + PN V
Sbjct: 262 GSGKVVEADKLFNEMIKKGFEPDEVTYTALIDGYCKLGEMKKAFFLHNQMVQIGLTPNVV 321

Query: 202 SYCILATAHA-VARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWAT 260
           +Y  LA        L T  E   E   K +   N ST + ++     L K  ++ +    
Sbjct: 322 TYTALADGLCKSGELDTANELLHEMCRKGLQ-LNISTYNTIV---NGLCKAGNILQAVKL 377

Query: 261 VQELPNV----RSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCK 316
           ++E+        + +Y   ++A+ +  ++ +A EL  EM           +N +++  C 
Sbjct: 378 MEEMKEAGLHPDTITYTTLMDAYYKTGEMVKARELLREMLDRGLQPTVVTFNVLMNGLCM 437

Query: 317 NGFIDKASGLLKEMSMNGCKPNAITYRHLALG-CFKSNLVEEGFKALELGMKLITTKKVR 375
           +G ++    LLK M   G  PNA TY  +    C ++N        + +  ++      +
Sbjct: 438 SGKLEDGERLLKWMLEKGIMPNAATYNSIMKQYCIRNN--------MRISTEIYRGMCAQ 489

Query: 376 SSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAK--IND 433
              P   T   +I+   +  ++  A  L +E+ +  +      YN LIK + K K  +  
Sbjct: 490 GVVPDSNTYNILIKGHCKARNMKEAWFLHKEMVEKRFNLTASSYNALIKGFFKRKKLLEA 549

Query: 434 PNLLRRMILGGARPDAETYSLL 455
             L   M   G    AE Y+L 
Sbjct: 550 RQLFEEMRREGLVASAEIYNLF 571



 Score = 41.2 bits (95), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 72/374 (19%), Positives = 145/374 (38%), Gaps = 51/374 (13%)

Query: 56  RPYRPKELDYSYLLEFTIKNHGISQGEKLFC-CIPKDYQ-NELLYNNLVIACLDKGVIKL 113
           R   P  + +S L+     +  + + +KLF   I K ++ +E+ Y  L+      G +K 
Sbjct: 244 REIVPDSIAFSALICGLSGSGKVVEADKLFNEMIKKGFEPDEVTYTALIDGYCKLGEMKK 303

Query: 114 SLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMK 173
           +     +M  +G + + + +  L       G   T   +L +M    +  ++ST++ ++ 
Sbjct: 304 AFFLHNQMVQIGLTPNVVTYTALADGLCKSGELDTANELLHEMCRKGLQLNISTYNTIVN 363

Query: 174 IEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAH-AVARLYTVAETYVEALEKSMTG 232
                 NI   +K+  +MK + + P+ ++Y  L  A+     +    E   E L++   G
Sbjct: 364 GLCKAGNILQAVKLMEEMKEAGLHPDTITYTTLMDAYYKTGEMVKARELLREMLDR---G 420

Query: 233 NNWSTLDVLIILYGYLAKGK--DLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEE 290
              + +   +++ G    GK  D ER+                                 
Sbjct: 421 LQPTVVTFNVLMNGLCMSGKLEDGERLLK------------------------------- 449

Query: 291 LWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALG-C 349
            W+  + +    AT  YNS++  YC    +  ++ + + M   G  P++ TY  L  G C
Sbjct: 450 -WMLEKGIMPNAAT--YNSIMKQYCIRNNMRISTEIYRGMCAQGVVPDSNTYNILIKGHC 506

Query: 350 FKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKK 409
              N+ E  F   E+  K         +        ++I+ F ++  +  A  LFEE+++
Sbjct: 507 KARNMKEAWFLHKEMVEKRFNLTASSYN--------ALIKGFFKRKKLLEARQLFEEMRR 558

Query: 410 ANYTKYTFVYNTLI 423
                   +YN  +
Sbjct: 559 EGLVASAEIYNLFV 572



 Score = 40.8 bits (94), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 45/236 (19%), Positives = 98/236 (41%), Gaps = 7/236 (2%)

Query: 98  YNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMK 157
           YN +V      G I  +++ M++M+  G     + +  L+      G       +LR+M 
Sbjct: 358 YNTIVNGLCKAGNILQAVKLMEEMKEAGLHPDTITYTTLMDAYYKTGEMVKARELLREML 417

Query: 158 ADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYT 217
              + P V TF++LM        +E   ++   M    + PN  +Y  +   + +     
Sbjct: 418 DRGLQPTVVTFNVLMNGLCMSGKLEDGERLLKWMLEKGIMPNAATYNSIMKQYCIRNNMR 477

Query: 218 VAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELP----NVRSKSYV 273
           ++      +       + +T ++LI  +    K ++++  W   +E+     N+ + SY 
Sbjct: 478 ISTEIYRGMCAQGVVPDSNTYNILIKGH---CKARNMKEAWFLHKEMVEKRFNLTASSYN 534

Query: 274 LAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKE 329
             I+ F +  ++  A +L+ EM+    + + E YN  + +  + G ++    L  E
Sbjct: 535 ALIKGFFKRKKLLEARQLFEEMRREGLVASAEIYNLFVDMNYEEGNMETTLELCDE 590


>gi|242064536|ref|XP_002453557.1| hypothetical protein SORBIDRAFT_04g008050 [Sorghum bicolor]
 gi|241933388|gb|EES06533.1| hypothetical protein SORBIDRAFT_04g008050 [Sorghum bicolor]
          Length = 390

 Score = 72.0 bits (175), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 74/360 (20%), Positives = 141/360 (39%), Gaps = 79/360 (21%)

Query: 132 VFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDM 191
            +  LI ++   G+     + L +M +     ++  ++ +++    +  ++  + + S M
Sbjct: 12  TYTILIRMSGKAGKATKFVSFLEEMVSKGCVLNLIAYNTVIEALGKNKMVDKAIFMLSKM 71

Query: 192 KRSEVEPNEVSYCI----LATAHAVARLYTVAETYVEALEKSM----------TGNNWST 237
             S+ +PN+ +Y I    LAT   + RL  + +     L +S+          +G+    
Sbjct: 72  IESDCQPNQFTYSIMLDVLATGGQLHRLNEILDICSGHLNRSVYSYLVKALCKSGHASEA 131

Query: 238 LDVLIILYGYLAKGKDLERIWATVQELPNVRSKS--------------------YVLAIE 277
             V   ++    KG D +   + ++ L N    +                    Y +   
Sbjct: 132 HSVFCRMWSSHEKG-DRDAFVSMLEALCNAEKTAEAIDLLHMMPEKGITTDVGMYNIIFS 190

Query: 278 AFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKP 337
           A G++ QVS    L+ +M++         YN +IS + + G +DKAS L +EM  + CKP
Sbjct: 191 ALGKLKQVSFMSSLYDKMKANGVAPDVFTYNIMISSFGRVGLVDKASELFEEMDDSSCKP 250

Query: 338 NAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDV 397
           + ITY                                           S+I    + GD+
Sbjct: 251 DVITYN------------------------------------------SMINCLGKNGDL 268

Query: 398 GNAENLFEELKKANYTKYTFVYNTLIKAYVKAKIND--PNLLRRMILGGARPDAETYSLL 455
             A  LF+++++  Y    F Y+ LI+ + K+   D   +L   MI  G  P+  TY++L
Sbjct: 269 DEAHMLFKDMQEKGYDPDVFTYSILIECFGKSNKVDMACSLFDEMIAQGCVPNIVTYNIL 328



 Score = 62.4 bits (150), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 45/153 (29%), Positives = 69/153 (45%), Gaps = 9/153 (5%)

Query: 271 SYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEM 330
           +Y + I +FGR+  V +A EL+ EM           YNS+I+   KNG +D+A  L K+M
Sbjct: 219 TYNIMISSFGRVGLVDKASELFEEMDDSSCKPDVITYNSMINCLGKNGDLDEAHMLFKDM 278

Query: 331 SMNGCKPNAITYRHLALGCF-KSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIE 389
              G  P+  TY  L + CF KSN V       ++   L      +   P + T   +++
Sbjct: 279 QEKGYDPDVFTYSIL-IECFGKSNKV-------DMACSLFDEMIAQGCVPNIVTYNILLD 330

Query: 390 IFAEKGDVGNAENLFEELKKANYTKYTFVYNTL 422
                G    A  L+E LK+      +  Y+ L
Sbjct: 331 CLERHGKTREAHKLYETLKQQGLAPDSITYSIL 363


>gi|225445998|ref|XP_002267263.1| PREDICTED: pentatricopeptide repeat-containing protein At2g18940
           [Vitis vinifera]
 gi|297735424|emb|CBI17864.3| unnamed protein product [Vitis vinifera]
          Length = 821

 Score = 72.0 bits (175), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 75/350 (21%), Positives = 141/350 (40%), Gaps = 22/350 (6%)

Query: 87  CIPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRR 146
           C P    N + +N ++  C +KG+ K      ++M+  G   +   FN LI      G +
Sbjct: 451 CAP----NSVTWNTMLAMCGNKGMHKYVNRVFREMKSCGFEPNRDTFNALIGAYGRCGSQ 506

Query: 147 KTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCIL 206
             +  +  +M      P V+T++ L+   A   + E    V  DMK    +PNE SY ++
Sbjct: 507 IDVVKMYEEMIKAGFTPCVTTYNALLNALARRGDWEAAESVILDMKSKGFKPNETSYSLM 566

Query: 207 ATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQEL-- 264
              +A        E   E +       +W  L  L++      K + L  +    QE   
Sbjct: 567 LNCYAKGGNGRGIEKIEEEIYNGHIFPSWILLRTLVLAN---FKRRALMGMERAFQEFCK 623

Query: 265 ----PNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFI 320
               P++   + +L+I  F +     RA E+   ++          YNS++ +Y + G  
Sbjct: 624 HGYKPDLVLFNSMLSI--FAKNKMYDRAHEMLRLIRESGLQPDLVTYNSLMDMYARGGEC 681

Query: 321 DKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPW 380
            K   +LK +  +G KP+ ++Y  +  G  +  L++E  + L      +T   +R   P 
Sbjct: 682 WKGEEILKGIQKSGGKPDLVSYNTVIKGFCRQGLMQEAIRTLS----EMTISGIR---PC 734

Query: 381 LETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAK 430
           + T  + +  ++ KG     E +   + + +       Y  ++  Y K K
Sbjct: 735 IVTYNTFVAGYSGKGMFSEVEEVISYMIQHDCRPNELTYKIVVDGYCKGK 784



 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 73/358 (20%), Positives = 153/358 (42%), Gaps = 25/358 (6%)

Query: 109 GVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRR-KTIPNILRQMKADKVAPHVST 167
           G  + ++   +KMR  G S + + +N ++ +    GR    I  +L +M+++ +     T
Sbjct: 223 GKYERAITMFEKMRKTGLSPTLVTYNVMLDVYGKMGRSWNKILGLLDEMRSNGLEFDEFT 282

Query: 168 FHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALE 227
              ++     +  ++   K ++ +K         +Y  L      A +Y+ A + ++ +E
Sbjct: 283 CSTVISACGREGLLDEARKFFARLKSEGYVAGTFTYNSLLQVFGKAGIYSEALSILKEME 342

Query: 228 KSMTGNNWSTLDVLIILY---GYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQ 284
           K+    +  T + L+  Y   G+  +G D          +PN  + +Y   I A+G+  +
Sbjct: 343 KNNCPPDLVTYNELVAAYVRAGFHEEGADFIDTMIRKGIMPN--AITYTTVINAYGKAGK 400

Query: 285 VSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRH 344
             +A   + +M+    +     YN+++ +  K   +++   +L +M  NGC PN++T+  
Sbjct: 401 EDKALSFFRQMKESGCVPNVCTYNAILGMLGKKSRLEEMIDMLCDMRSNGCAPNSVTWNT 460

Query: 345 LALGCFKSNL---VEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAE 401
           +   C    +   V   F+ +          K     P  +T  ++I  +   G   +  
Sbjct: 461 MLAMCGNKGMHKYVNRVFREM----------KSCGFEPNRDTFNALIGAYGRCGSQIDVV 510

Query: 402 NLFEELKKANYTKYTFVYNTLIKAYVKAKINDPNLLRRMILG----GARPDAETYSLL 455
            ++EE+ KA +T     YN L+ A   A+  D      +IL     G +P+  +YSL+
Sbjct: 511 KMYEEMIKAGFTPCVTTYNALLNAL--ARRGDWEAAESVILDMKSKGFKPNETSYSLM 566



 Score = 68.6 bits (166), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 59/254 (23%), Positives = 112/254 (44%), Gaps = 17/254 (6%)

Query: 210 HAVARL--YTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPN- 266
           HA +R+  Y  A T  E + K+       T +V++ +YG +  G+   +I   + E+ + 
Sbjct: 217 HAYSRIGKYERAITMFEKMRKTGLSPTLVTYNVMLDVYGKM--GRSWNKILGLLDEMRSN 274

Query: 267 ---VRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKA 323
                  +    I A GR   +  A + +  ++S   +  T  YNS++ V+ K G   +A
Sbjct: 275 GLEFDEFTCSTVISACGREGLLDEARKFFARLKSEGYVAGTFTYNSLLQVFGKAGIYSEA 334

Query: 324 SGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLET 383
             +LKEM  N C P+ +TY  L     ++   EE       G   I T   +   P   T
Sbjct: 335 LSILKEMEKNNCPPDLVTYNELVAAYVRAGFHEE-------GADFIDTMIRKGIMPNAIT 387

Query: 384 TLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYV-KAKINDP-NLLRRMI 441
             ++I  + + G    A + F ++K++        YN ++     K+++ +  ++L  M 
Sbjct: 388 YTTVINAYGKAGKEDKALSFFRQMKESGCVPNVCTYNAILGMLGKKSRLEEMIDMLCDMR 447

Query: 442 LGGARPDAETYSLL 455
             G  P++ T++ +
Sbjct: 448 SNGCAPNSVTWNTM 461


>gi|414887035|tpg|DAA63049.1| TPA: crs2 associated factor1 [Zea mays]
          Length = 668

 Score = 72.0 bits (175), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 80/408 (19%), Positives = 169/408 (41%), Gaps = 57/408 (13%)

Query: 59  RPKELDYSYLLEFTIKNHGISQGEKLF-----CCIPKDYQNELLYNNLVIACLDKGVIKL 113
           +P+   Y+ LL+  ++   +   E++      C +  D   E  Y+ LV A    G  + 
Sbjct: 296 KPRTRAYNALLKGYVRIASLKNAEQVLDEMSQCGVAPD---EATYSLLVDAYTRAGRWES 352

Query: 114 SLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMK 173
           +   +K+M   G   S  VF+R++      G  +    +LR+M+A  V P    +++++ 
Sbjct: 353 ARILLKEMEADGVKPSSYVFSRILAGFRDRGDWQKAFAVLREMQASGVRPDRHFYNVMID 412

Query: 174 IEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGN 233
                + +   M  ++ M+   +EP+ V++  L  AH     +  A    E + +S    
Sbjct: 413 TFGKYNCLGHAMDAFNKMREEGIEPDVVTWNTLIDAHCKGGRHDRAAELFEEMRESNCPP 472

Query: 234 NWSTLDVLIILYGYLAKGKDLERIWATVQE---LPNVRSKSYVLAIEAFGRIAQVSRAEE 290
             +T +++I L G     + +E + + ++E   +PN+   +Y   ++ +GR  +   A +
Sbjct: 473 GTTTYNIMINLLGEQEHWEGVEAMLSEMKEQGLVPNI--ITYTTLVDVYGRSGRYKEAID 530

Query: 291 LWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCF 350
               M++     +   Y+++++ Y + G  D A  ++K M  +G                
Sbjct: 531 CIEAMKADGLKPSPTMYHALVNAYAQRGLADHALNVVKAMKADG---------------- 574

Query: 351 KSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKA 410
                      LE+ + ++                S+I  F E   V  A ++ + +++ 
Sbjct: 575 -----------LEVSILVLN---------------SLINAFGEDRRVVEAFSVLQFMREN 608

Query: 411 NYTKYTFVYNTLIKAYVKAKIND--PNLLRRMILGGARPDAETYSLLK 456
                   Y TL+KA ++ +  D  P +   MI  G  PD +  ++L+
Sbjct: 609 GLRPDVITYTTLMKALIRVEQFDKVPVIYEEMITSGCAPDRKARAMLR 656



 Score = 62.0 bits (149), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 63/277 (22%), Positives = 119/277 (42%), Gaps = 13/277 (4%)

Query: 184 LMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVA-ETYVEALEKSMT--GNNWSTLDV 240
           L ++  D++ S +EP+   +  L +A A A L   A E    A    +T   N  + L  
Sbjct: 212 LERLLGDLRESRLEPDAPLFSDLISAFARAALPDAALELLASAQAIGLTPRSNAVTALIS 271

Query: 241 LIILYGYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQ 300
            +   G +A+ + L   +    E+   R+++Y   ++ + RIA +  AE++  EM     
Sbjct: 272 ALGTAGRVAEAEALFLEFFLAGEI-KPRTRAYNALLKGYVRIASLKNAEQVLDEMSQCGV 330

Query: 301 LKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFK 360
                 Y+ ++  Y + G  + A  LLKEM  +G KP++  +  +  G       ++ F 
Sbjct: 331 APDEATYSLLVDAYTRAGRWESARILLKEMEADGVKPSSYVFSRILAGFRDRGDWQKAFA 390

Query: 361 ALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYN 420
            L    + +    VR    +      +I+ F +   +G+A + F ++++         +N
Sbjct: 391 VL----REMQASGVRPDRHFYNV---MIDTFGKYNCLGHAMDAFNKMREEGIEPDVVTWN 443

Query: 421 TLIKAYVKAKIND--PNLLRRMILGGARPDAETYSLL 455
           TLI A+ K   +D    L   M      P   TY+++
Sbjct: 444 TLIDAHCKGGRHDRAAELFEEMRESNCPPGTTTYNIM 480


>gi|125564557|gb|EAZ09937.1| hypothetical protein OsI_32236 [Oryza sativa Indica Group]
          Length = 544

 Score = 72.0 bits (175), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 61/230 (26%), Positives = 106/230 (46%), Gaps = 19/230 (8%)

Query: 237 TLDVLI---ILYGYLAKGK--DLERIWATVQE---LPNVRSKSYVLAIEAFGRIAQVSRA 288
           T DV++   +++ +   G+  + ER++A +Q+    PNV   +Y   I+A  R  QV RA
Sbjct: 247 TPDVVLYTTLVHAWCRSGRLDEAERVFAEMQQAGVTPNV--YTYTAVIDAMYRAGQVPRA 304

Query: 289 EELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLA-L 347
           +EL  +M        T  +N+++  + K G  ++   +  +M   GC+P+ ITY  L   
Sbjct: 305 QELLCQMIDSGCPPNTATFNAIMRAHVKAGRSEQVLQVHNQMRQLGCEPDIITYNFLMET 364

Query: 348 GCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEEL 407
            C K      G   L+  MK++T    +   P   T   ++++    G+V  A  L+E +
Sbjct: 365 HCGK------GQSNLDAAMKMLTRMIAKGCIPDCHTFNPMLKLVLVLGNVNAARKLYERM 418

Query: 408 KKANYTKYTFVYNTLIKAYVKAKINDPNLL--RRMILGGARPDAETYSLL 455
           ++         YN L++ +   K  D  L   R M   G  P+  TY+ L
Sbjct: 419 QELQCKPNVVTYNLLMRLFNLEKSMDMVLRIKRDMDAQGVEPNVNTYAAL 468



 Score = 43.1 bits (100), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 60/313 (19%), Positives = 126/313 (40%), Gaps = 44/313 (14%)

Query: 96  LLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQ 155
           +LY  LV A    G +  +     +M+  G + +   +  +I      G+      +L Q
Sbjct: 251 VLYTTLVHAWCRSGRLDEAERVFAEMQQAGVTPNVYTYTAVIDAMYRAGQVPRAQELLCQ 310

Query: 156 MKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARL 215
           M      P+ +TF+ +M+        E +++V++ M++   EP+ ++Y  L   H     
Sbjct: 311 MIDSGCPPNTATFNAIMRAHVKAGRSEQVLQVHNQMRQLGCEPDIITYNFLMETHC---- 366

Query: 216 YTVAETYVEALEKSMTGNNWSTLDVLI-ILYGYLAKGKDLERIWATVQELPNVRSKSYVL 274
                           G   S LD  + +L   +AKG            +P+  + + +L
Sbjct: 367 ----------------GKGQSNLDAAMKMLTRMIAKGC-----------IPDCHTFNPML 399

Query: 275 AIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNG 334
            +     +  V+ A +L+  MQ ++       YN ++ ++     +D    + ++M   G
Sbjct: 400 KLVLV--LGNVNAARKLYERMQELQCKPNVVTYNLLMRLFNLEKSMDMVLRIKRDMDAQG 457

Query: 335 CKPNAITYRHLALG-CFKSNLVEEGFKALELGMK-LITTKKVRSSTPWLETTLSIIEIFA 392
            +PN  TY  L    C + N     +K   + ++ ++  K ++ + P  +  L+++    
Sbjct: 458 VEPNVNTYAALIEAFCGRGN-----WKRAHMTLREMVEEKALKPTKPVYDMVLALLR--- 509

Query: 393 EKGDVGNAENLFE 405
           + G +   E L E
Sbjct: 510 KAGQLRRHEELVE 522


>gi|224133034|ref|XP_002327945.1| predicted protein [Populus trichocarpa]
 gi|222837354|gb|EEE75733.1| predicted protein [Populus trichocarpa]
          Length = 1450

 Score = 72.0 bits (175), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 95/421 (22%), Positives = 166/421 (39%), Gaps = 54/421 (12%)

Query: 44  RALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQGEKLFCCIPKDYQNEL-LYNNLV 102
           RA EV EW+     Y P     S +L    K +      ++F       +N + +YN ++
Sbjct: 204 RAFEVYEWLNLRHWYSPNARMLSTILAVLGKANQEPLAVEVFTRAEPSVENTVKVYNAMM 263

Query: 103 IACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNI----LRQMKA 158
                 G      E    MR  G     + FN LI  N+     +  PN+    L +++ 
Sbjct: 264 GVYARSGKFNKVQELFDLMRERGCEPDLVSFNTLI--NARLKAGEMTPNLAIELLTEVRR 321

Query: 159 DKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTV 218
             + P + T++ L+   +   N+E  + V+ DM     EP+  +Y  + + +    L   
Sbjct: 322 SGLRPDIITYNTLISACSRASNLEEAVNVFDDMVAHHCEPDLWTYNAMISVYGRCGLSGK 381

Query: 219 AETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSKSYVLAIEA 278
           AE     LE                  G+                 P+  + SY   + A
Sbjct: 382 AEQLFNDLESR----------------GFF----------------PD--AVSYNSFLYA 407

Query: 279 FGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPN 338
           F R   V + +++  EM  +   K    YN++I +Y K G  D A  L ++M  +G  P+
Sbjct: 408 FAREGNVEKVKDICEEMVKIGFGKDEMTYNTMIHMYGKQGQNDLALQLYRDMKSSGRNPD 467

Query: 339 AITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVG 398
            ITY  L     K+N +EE   A  +  +++ T       P L T  ++I  +A+ G   
Sbjct: 468 VITYTVLIDSLGKTNKIEE---AAGMMSEMLNT----GVKPTLRTYSALICGYAKAGKPV 520

Query: 399 NAENLFEELKKANYTKYTFVYNTLIKAYVKAKINDP----NLLRRMILGGARPDAETYSL 454
            AE  F+ + ++        Y+ ++  ++  + N+P       + MI  G  P+   Y L
Sbjct: 521 EAEETFDCMLRSGTRPDQLAYSVMLDIHL--RFNEPKRAMTFYKEMIHDGIMPEHSLYEL 578

Query: 455 L 455
           +
Sbjct: 579 M 579



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 71/363 (19%), Positives = 149/363 (41%), Gaps = 36/363 (9%)

Query: 97   LYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQM 156
            ++  L+  CL+  +   + +    MR  G   S  ++  +++L    G  +T  +++   
Sbjct: 711  MFEALIQCCLENELFTEASQVFSDMRFCGIKASECLYQSMMLLYCKMGFPETAHHLIDLT 770

Query: 157  KAD-KVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARL 215
            + D  V  ++S +  +++        +    V  +M++S +  N   +  L  A+A +  
Sbjct: 771  ETDGTVLNNISVYVDVIEAYGRLKLWQKAESVAGNMRQSCITVNRKVWNALIEAYAASGC 830

Query: 216  YTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSK----S 271
            Y  A      + K        +++ L  L   +  G+ LE ++  VQEL ++  K    S
Sbjct: 831  YERARAVFNTMMKDGPSPTVDSINGL--LQALIVDGR-LEELYVVVQELQDIGFKISKSS 887

Query: 272  YVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMS 331
             +L ++AF R   +   ++++  M++     +   Y  +  + C+   +     +L EM 
Sbjct: 888  ILLMLDAFARAGNIFEVKKIYHGMKAAGYFPSMHLYRVMAQLLCRGKQVRDVEAMLSEME 947

Query: 332  MNGCKP-----NAITYRHLALGCFKSN------LVEEGFKALEL---------------- 364
              G KP     N++   ++A+  F+        + E+G +  E                 
Sbjct: 948  EAGFKPDLSIWNSVLKMYVAIDDFRKTTQIYQRIKEDGLEPDEDTYNILIVMYCRDHRPK 1007

Query: 365  -GMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLI 423
             G+ L+   +     P L+T  S++  F ++  V  AE LFEEL+          Y+ ++
Sbjct: 1008 EGLVLMDEMRTVGLEPKLDTYKSLVASFGKQQLVEQAEELFEELQSTGCKLDRSFYHIMM 1067

Query: 424  KAY 426
            K Y
Sbjct: 1068 KIY 1070



 Score = 45.4 bits (106), Expect = 0.065,   Method: Compositional matrix adjust.
 Identities = 66/331 (19%), Positives = 134/331 (40%), Gaps = 14/331 (4%)

Query: 99   NNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKA 158
            N L+ A +  G ++     +++++ +G  IS      ++   +  G    +  I   MKA
Sbjct: 854  NGLLQALIVDGRLEELYVVVQELQDIGFKISKSSILLMLDAFARAGNIFEVKKIYHGMKA 913

Query: 159  DKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPN-EVSYCILATAHAVARLYT 217
                P +  + ++ ++      +  +  + S+M+ +  +P+  +   +L    A+     
Sbjct: 914  AGYFPSMHLYRVMAQLLCRGKQVRDVEAMLSEMEEAGFKPDLSIWNSVLKMYVAIDDFRK 973

Query: 218  VAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKD---LERIWATVQELPNVRSKSYVL 274
              + Y    E  +  +   T ++LI++Y    + K+   L     TV   P +   +Y  
Sbjct: 974  TTQIYQRIKEDGLEPDE-DTYNILIVMYCRDHRPKEGLVLMDEMRTVGLEPKL--DTYKS 1030

Query: 275  AIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNG 334
             + +FG+   V +AEEL+ E+QS         Y+ ++ +Y  +G   KA  L   M   G
Sbjct: 1031 LVASFGKQQLVEQAEELFEELQSTGCKLDRSFYHIMMKIYRNSGSHSKAQRLFSMMKDEG 1090

Query: 335  CKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEK 394
             +P   T   L +    S   +E  K L     L  T    S+ P+     S+I+ +   
Sbjct: 1091 VEPTIATMHLLMVSYGSSGQPQEAEKVLS---NLKETDANLSTLPY----SSVIDAYVRN 1143

Query: 395  GDVGNAENLFEELKKANYTKYTFVYNTLIKA 425
            GD        +++K+        ++   I+A
Sbjct: 1144 GDYNAGIQKLKQVKEEGLEPDHRIWTCFIRA 1174


>gi|297849294|ref|XP_002892528.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297338370|gb|EFH68787.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 606

 Score = 72.0 bits (175), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 89/397 (22%), Positives = 153/397 (38%), Gaps = 64/397 (16%)

Query: 76  HGISQGEKLFCCIPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNR 135
           H IS  + +  C+     N ++ + LV+A  +    +L  E  K+    G+ +S +    
Sbjct: 141 HAISMCDNV--CV-----NSIIADMLVLAYANNSRFELGFEAFKRSGYYGYKLSAMSCKP 193

Query: 136 LIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSE 195
           L++      R   +  + ++M   K+ P+V TF++++        +     V  DMK   
Sbjct: 194 LMVALLKQNRSADVEYLYKEMIRRKIQPNVFTFNVVINALCKTGKMNKARDVMEDMKVYG 253

Query: 196 VEPNEVSYCILATAH----AVARLYTVAETYVEALEKSMTGNNWSTLDVLI--------- 242
             PN VSY  L   +       ++Y       E +E  ++  N +T ++LI         
Sbjct: 254 YSPNVVSYNTLIDGYCKLGGNGKMYKADAVLKEMVENEVSP-NLTTFNILIDGFWKDDNL 312

Query: 243 ------------------------ILYGYLAKGKDLERIW-------ATVQELPNVRSKS 271
                                   ++ G    GK  E I        A VQ  PN+   +
Sbjct: 313 PGSLKVFKEMLDQDVIPNVITYNSLINGLCNGGKINEAIGMRDKMVSAGVQ--PNL--IT 368

Query: 272 YVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMS 331
           Y   I  F +   +  A +++  ++       T  YN +I  YCK G ID    L +EM 
Sbjct: 369 YHSLINGFCKNGMMKEALDMFDSVKGQGTRPTTRMYNMLIDAYCKLGKIDDGFALKEEME 428

Query: 332 MNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIF 391
             G  P+  TY  L  G  ++  +E   K  +     +T K +    P L T   ++E +
Sbjct: 429 REGIVPDVGTYNCLIAGLCRNGNIEAAKKLFD----QLTNKGL----PDLVTFHILMEGY 480

Query: 392 AEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVK 428
             +G+   A  L +E+ K         YN ++K Y K
Sbjct: 481 CSRGESRKAAMLLKEMSKMGLKPRHLTYNIMMKGYCK 517



 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 89/406 (21%), Positives = 167/406 (41%), Gaps = 87/406 (21%)

Query: 94  NELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLI---ILNSSPGRRKTIP 150
           N   +N ++ A    G +  + + M+ M+V G+S + + +N LI         G+     
Sbjct: 222 NVFTFNVVINALCKTGKMNKARDVMEDMKVYGYSPNVVSYNTLIDGYCKLGGNGKMYKAD 281

Query: 151 NILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAH 210
            +L++M  ++V+P+++TF+IL+     D N+ G +KV+ +M   +V PN ++Y  L    
Sbjct: 282 AVLKEMVENEVSPNLTTFNILIDGFWKDDNLPGSLKVFKEMLDQDVIPNVITYNSLINGL 341

Query: 211 AVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKG--KDLERIWATVQ-ELPNV 267
                   A    + +  +    N  T   LI   G+   G  K+   ++ +V+ +    
Sbjct: 342 CNGGKINEAIGMRDKMVSAGVQPNLITYHSLI--NGFCKNGMMKEALDMFDSVKGQGTRP 399

Query: 268 RSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFID------ 321
            ++ Y + I+A+ ++ ++     L  EM+    +     YN +I+  C+NG I+      
Sbjct: 400 TTRMYNMLIDAYCKLGKIDDGFALKEEMEREGIVPDVGTYNCLIAGLCRNGNIEAAKKLF 459

Query: 322 ----------------------------KASGLLKEMSMNGCKPNAITYRHLALGCFKSN 353
                                       KA+ LLKEMS  G KP  +TY          N
Sbjct: 460 DQLTNKGLPDLVTFHILMEGYCSRGESRKAAMLLKEMSKMGLKPRHLTY----------N 509

Query: 354 LVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYT 413
           ++ +G                                + ++G++  A N+  +++K    
Sbjct: 510 IMMKG--------------------------------YCKEGNLKAATNMRTQMEKERRL 537

Query: 414 KYTFV-YNTLIKAYV-KAKINDPN-LLRRMILGGARPDAETYSLLK 456
           +     YN L++ Y  K K+ D N LL  M+  G  P+  TY ++K
Sbjct: 538 RMNVASYNVLLQGYSQKGKLEDANMLLNEMLEKGLVPNRITYEIVK 583



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 53/272 (19%), Positives = 117/272 (43%), Gaps = 16/272 (5%)

Query: 94  NELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNIL 153
           N + YN+L+    + G I  ++    KM   G   + + ++ LI      G  K   ++ 
Sbjct: 330 NVITYNSLINGLCNGGKINEAIGMRDKMVSAGVQPNLITYHSLINGFCKNGMMKEALDMF 389

Query: 154 RQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSY-CILATAHAV 212
             +K     P    +++L+        I+    +  +M+R  + P+  +Y C++A     
Sbjct: 390 DSVKGQGTRPTTRMYNMLIDAYCKLGKIDDGFALKEEMEREGIVPDVGTYNCLIAGLCRN 449

Query: 213 ARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNV----R 268
             +    + + +   K +       +   I++ GY ++G+   +    ++E+  +    R
Sbjct: 450 GNIEAAKKLFDQLTNKGLP----DLVTFHILMEGYCSRGES-RKAAMLLKEMSKMGLKPR 504

Query: 269 SKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKAT-EQYNSVISVYCKNGFIDKASGLL 327
             +Y + ++ + +   +  A  +  +M+  ++L+     YN ++  Y + G ++ A+ LL
Sbjct: 505 HLTYNIMMKGYCKEGNLKAATNMRTQMEKERRLRMNVASYNVLLQGYSQKGKLEDANMLL 564

Query: 328 KEMSMNGCKPNAITYRHLALGCFKSNLVEEGF 359
            EM   G  PN ITY        K  +V++GF
Sbjct: 565 NEMLEKGLVPNRITYE-----IVKEEMVDKGF 591


>gi|357160857|ref|XP_003578899.1| PREDICTED: pentatricopeptide repeat-containing protein At1g22960,
           mitochondrial-like [Brachypodium distachyon]
          Length = 714

 Score = 72.0 bits (175), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 78/307 (25%), Positives = 127/307 (41%), Gaps = 46/307 (14%)

Query: 153 LRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAV 212
            ++M    VAP V   + ++++  +    + +  VYSDM +  VEP+  +Y         
Sbjct: 182 FQEMARHGVAPFVKECNCVLRVLRDAARWDDMRAVYSDMLQLGVEPSIFTY--------- 232

Query: 213 ARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSKSY 272
               T+ +++ +A            +D  + L       KD+E   A    LPN    +Y
Sbjct: 233 ---NTLLDSFCKA----------GRMDQAVALL------KDMEARAAGC--LPN--DVTY 269

Query: 273 VLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSM 332
            + I    R  ++ +A +L   M+  K+  A   YN +I+      F++KA  LL EM  
Sbjct: 270 NVVINGLARKGELEKAAQLVDIMRLSKKASAF-TYNPLITGLLARDFVEKAGALLLEMEN 328

Query: 333 NGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFA 392
            G  P  +TY  L  G FK+   E      +         + +   P L T  S+I  + 
Sbjct: 329 EGIVPTVVTYNTLIDGLFKTGNAEAAQVKFD-------EMRAKGLLPDLITYNSLINGYC 381

Query: 393 EKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKINDPNLLRR----MILGGARPD 448
           + G++  A  LF +LK+A        YN LI  Y   ++ D    RR    M      PD
Sbjct: 382 KAGNLKQALCLFGDLKRAGLGPTVLTYNILIDGY--CRLGDLEGARRLKEEMTEEDCLPD 439

Query: 449 AETYSLL 455
             TY++L
Sbjct: 440 VCTYTIL 446



 Score = 63.2 bits (152), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 83/378 (21%), Positives = 155/378 (41%), Gaps = 27/378 (7%)

Query: 87  CIPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRR 146
           C+P    N++ YN ++     KG ++ + + +  MR L    S   +N LI    +    
Sbjct: 262 CLP----NDVTYNVVINGLARKGELEKAAQLVDIMR-LSKKASAFTYNPLITGLLARDFV 316

Query: 147 KTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCIL 206
           +    +L +M+ + + P V T++ L+       N E     + +M+   + P+ ++Y  L
Sbjct: 317 EKAGALLLEMENEGIVPTVVTYNTLIDGLFKTGNAEAAQVKFDEMRAKGLLPDLITYNSL 376

Query: 207 ATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQE--- 263
              +  A     A      L+++  G    T ++LI  Y  L   +   R+   + E   
Sbjct: 377 INGYCKAGNLKQALCLFGDLKRAGLGPTVLTYNILIDGYCRLGDLEGARRLKEEMTEEDC 436

Query: 264 LPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKA 323
           LP+V   +Y + +     +  ++     + EM S         YN+ IS     G I  A
Sbjct: 437 LPDV--CTYTILMNGSCMVRNLAMVRIFFDEMLSKGLEPDCFAYNTRISAELTIGAITNA 494

Query: 324 SGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLET 383
             L +EM + G   + +TY  L  G  K+  +++ +    L MK++T            T
Sbjct: 495 FQLREEMMLRGISSDTVTYNVLIDGLCKTGSLKDAYV---LWMKMVTDGLRLDCV----T 547

Query: 384 TLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKINDPNL------L 437
              +I    E+G +  A+N+F+ +  +  +     Y   I  Y +      NL       
Sbjct: 548 YTCLIHAHCERGRLIEAKNIFDGMVASGLSPSVVTYTIFIHTYCRRG----NLYLAYGWF 603

Query: 438 RRMILGGARPDAETYSLL 455
           R+M+  G  P+  TY++L
Sbjct: 604 RKMLEEGVEPNEVTYNVL 621



 Score = 53.9 bits (128), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 71/350 (20%), Positives = 134/350 (38%), Gaps = 9/350 (2%)

Query: 96  LLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQ 155
           + YN+L+      G +K +L     ++  G   + L +N LI      G  +    +  +
Sbjct: 371 ITYNSLINGYCKAGNLKQALCLFGDLKRAGLGPTVLTYNILIDGYCRLGDLEGARRLKEE 430

Query: 156 MKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARL 215
           M  +   P V T+ ILM       N+  +   + +M    +EP+  +Y    +A      
Sbjct: 431 MTEEDCLPDVCTYTILMNGSCMVRNLAMVRIFFDEMLSKGLEPDCFAYNTRISAELTIGA 490

Query: 216 YTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWA-TVQELPNVRSKSYVL 274
            T A    E +      ++  T +VLI         KD   +W   V +   +   +Y  
Sbjct: 491 ITNAFQLREEMMLRGISSDTVTYNVLIDGLCKTGSLKDAYVLWMKMVTDGLRLDCVTYTC 550

Query: 275 AIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNG 334
            I A     ++  A+ ++  M +     +   Y   I  YC+ G +  A G  ++M   G
Sbjct: 551 LIHAHCERGRLIEAKNIFDGMVASGLSPSVVTYTIFIHTYCRRGNLYLAYGWFRKMLEEG 610

Query: 335 CKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEK 394
            +PN +TY  L     +    E  ++     ++       R   P   T   +I+   ++
Sbjct: 611 VEPNEVTYNVLMHALCRMGRTESAYQHFHEMLE-------RGLVPNKYTYTLLIDGSCKE 663

Query: 395 GDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKINDP-NLLRRMILG 443
           G+  +A  L+ E+ +         +N L K + +  + D    L  ++LG
Sbjct: 664 GNWVHAIRLYCEMHQKGIHPDHCTHNALFKGFGEGHMYDAVQYLENVVLG 713


  Database: nr
    Posted date:  Mar 3, 2013 10:45 PM
  Number of letters in database: 999,999,864
  Number of sequences in database:  2,912,245
  
  Database: /local_scratch/syshi//blastdatabase/nr.01
    Posted date:  Mar 3, 2013 10:52 PM
  Number of letters in database: 999,999,666
  Number of sequences in database:  2,912,720
  
  Database: /local_scratch/syshi//blastdatabase/nr.02
    Posted date:  Mar 3, 2013 10:58 PM
  Number of letters in database: 999,999,938
  Number of sequences in database:  3,014,250
  
  Database: /local_scratch/syshi//blastdatabase/nr.03
    Posted date:  Mar 3, 2013 11:03 PM
  Number of letters in database: 999,999,780
  Number of sequences in database:  2,805,020
  
  Database: /local_scratch/syshi//blastdatabase/nr.04
    Posted date:  Mar 3, 2013 11:08 PM
  Number of letters in database: 999,999,551
  Number of sequences in database:  2,816,253
  
  Database: /local_scratch/syshi//blastdatabase/nr.05
    Posted date:  Mar 3, 2013 11:13 PM
  Number of letters in database: 999,999,897
  Number of sequences in database:  2,981,387
  
  Database: /local_scratch/syshi//blastdatabase/nr.06
    Posted date:  Mar 3, 2013 11:18 PM
  Number of letters in database: 999,999,649
  Number of sequences in database:  2,911,476
  
  Database: /local_scratch/syshi//blastdatabase/nr.07
    Posted date:  Mar 3, 2013 11:24 PM
  Number of letters in database: 999,999,452
  Number of sequences in database:  2,920,260
  
  Database: /local_scratch/syshi//blastdatabase/nr.08
    Posted date:  Mar 3, 2013 11:25 PM
  Number of letters in database: 64,230,274
  Number of sequences in database:  189,558
  
Lambda     K      H
   0.320    0.135    0.392 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,912,715,739
Number of Sequences: 23463169
Number of extensions: 271563298
Number of successful extensions: 736207
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 4043
Number of HSP's successfully gapped in prelim test: 3575
Number of HSP's that attempted gapping in prelim test: 662698
Number of HSP's gapped (non-prelim): 36436
length of query: 464
length of database: 8,064,228,071
effective HSP length: 146
effective length of query: 318
effective length of database: 8,933,572,693
effective search space: 2840876116374
effective search space used: 2840876116374
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 79 (35.0 bits)