BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 044770
(464 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2BPT|A Chain A, Structure Of The Nup1p:kap95p Complex
pdb|2BKU|B Chain B, Kap95p:rangtp Complex
pdb|2BKU|D Chain D, Kap95p:rangtp Complex
pdb|3EA5|B Chain B, Kap95p Binding Induces The Switch Loops Of Rangdp To Adopt
The Gtp- Bound Conformation: Implications For Nuclear
Import Complex Assembly Dynamics
pdb|3EA5|D Chain D, Kap95p Binding Induces The Switch Loops Of Rangdp To Adopt
The Gtp- Bound Conformation: Implications For Nuclear
Import Complex Assembly Dynamics
Length = 861
Score = 35.0 bits (79), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 18/84 (21%), Positives = 43/84 (51%), Gaps = 7/84 (8%)
Query: 191 MKRSEVEPNEVSYCILATAHAVARLYT------VAETYVEALEKSMTGNNWSTLDVLIIL 244
+ R +P + + + +A A +L+ + E +E +E+++T +NW + ++
Sbjct: 333 LTRQNEDPEDDDWNVSMSAGACLQLFAQNCGNHILEPVLEFVEQNITADNWRNREAAVMA 392
Query: 245 YGYLAKGKD-LERIWATVQELPNV 267
+G + G D ++R + Q LP++
Sbjct: 393 FGSIMDGPDKVQRTYYVHQALPSI 416
>pdb|3ND2|A Chain A, Structure Of Yeast Importin-Beta (Kap95p)
Length = 861
Score = 35.0 bits (79), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 18/84 (21%), Positives = 43/84 (51%), Gaps = 7/84 (8%)
Query: 191 MKRSEVEPNEVSYCILATAHAVARLYT------VAETYVEALEKSMTGNNWSTLDVLIIL 244
+ R +P + + + +A A +L+ + E +E +E+++T +NW + ++
Sbjct: 333 LTRQNEDPEDDDWNVSMSAGACLQLFAQNCGNHILEPVLEFVEQNITADNWRNREAAVMA 392
Query: 245 YGYLAKGKD-LERIWATVQELPNV 267
+G + G D ++R + Q LP++
Sbjct: 393 FGSIMDGPDKVQRTYYVHQALPSI 416
>pdb|2AVU|E Chain E, Structure Of The Escherichia Coli Flhdc Complex, A
Prokaryotic Heteromeric Regulator Of Transcription
pdb|2AVU|F Chain F, Structure Of The Escherichia Coli Flhdc Complex, A
Prokaryotic Heteromeric Regulator Of Transcription
Length = 192
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 23/40 (57%)
Query: 324 SGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALE 363
SGLL+ S N C N IT+ H +G F +L + +A++
Sbjct: 129 SGLLQLSSCNCCGGNFITHAHQPVGSFACSLCQPPSRAVK 168
>pdb|4G24|A Chain A, Crystal Structure Of Proteinaceous Rnase P 1 (Prorp1) From
A. Thaliana With Mn
pdb|4G26|A Chain A, Crystal Structure Of Proteinaceous Rnase P 1 (Prorp1) From
A. Thaliana With Ca
Length = 501
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 29/119 (24%), Positives = 49/119 (41%), Gaps = 11/119 (9%)
Query: 95 ELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNS----------SPG 144
E L + C KG + +L + R G +S +N L+ + S +PG
Sbjct: 26 EALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPG 85
Query: 145 RRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSY 203
+ +I +QM DKV P+ +TF ++ + E + MK ++P SY
Sbjct: 86 LSRGF-DIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSY 143
>pdb|2PTF|A Chain A, Crystal Structure Of Protein Mth_863 From Methanobacterium
Thermoautotrophicum Bound To Fmn
pdb|2PTF|B Chain B, Crystal Structure Of Protein Mth_863 From Methanobacterium
Thermoautotrophicum Bound To Fmn
Length = 233
Score = 30.0 bits (66), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 40/75 (53%), Gaps = 7/75 (9%)
Query: 367 KLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAY 426
++++ KK+ + E+ L +++ A GDV AE+ L + Y V +LI AY
Sbjct: 127 EVVSVKKLVKRDRFGESELHVVK--ARAGDVMRAESFRMALNRGIYA----VIESLI-AY 179
Query: 427 VKAKINDPNLLRRMI 441
+A+ +DP +LR I
Sbjct: 180 TRAEFSDPLVLRERI 194
>pdb|2Q8N|A Chain A, Crystal Structure Of Glucose-6-Phosphate Isomerase (Ec
5.3.1.9) (Tm1385) From Thermotoga Maritima At 1.82 A
Resolution
pdb|2Q8N|B Chain B, Crystal Structure Of Glucose-6-Phosphate Isomerase (Ec
5.3.1.9) (Tm1385) From Thermotoga Maritima At 1.82 A
Resolution
pdb|2Q8N|C Chain C, Crystal Structure Of Glucose-6-Phosphate Isomerase (Ec
5.3.1.9) (Tm1385) From Thermotoga Maritima At 1.82 A
Resolution
Length = 460
Score = 28.5 bits (62), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 42/89 (47%), Gaps = 3/89 (3%)
Query: 224 EALEKSMTGNNWSTLDVLIIL--YGYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGR 281
+A EKSM N +I L Y YL KGK + + A + + L E+ G+
Sbjct: 238 DAFEKSMKENILENPAAMIALTHYLYLNKGKSISVMMAYSNRMIYLVDWYRQLWAESLGK 297
Query: 282 IAQVSRAEELWLEMQSVKQLKATEQYNSV 310
+ + EE++ VK L AT+Q++ +
Sbjct: 298 RYNL-KGEEVFTGQTPVKALGATDQHSQI 325
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.135 0.392
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,294,486
Number of Sequences: 62578
Number of extensions: 523953
Number of successful extensions: 1269
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 1263
Number of HSP's gapped (non-prelim): 15
length of query: 464
length of database: 14,973,337
effective HSP length: 102
effective length of query: 362
effective length of database: 8,590,381
effective search space: 3109717922
effective search space used: 3109717922
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)