BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 044770
(464 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q940Q2|PPR19_ARATH Pentatricopeptide repeat-containing protein At1g07590,
mitochondrial OS=Arabidopsis thaliana GN=At1g07590 PE=2
SV=1
Length = 534
Score = 678 bits (1749), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 315/462 (68%), Positives = 387/462 (83%)
Query: 1 IERLPRGEPVGSAFQSWMREGFPVHRGEIFHSINRLRKLQLNKRALEVMEWVIRERPYRP 60
IE+LP+G VGSA QSWM +GFPVH G+++H+INRLRKL NKRALE+MEW+IRERPYR
Sbjct: 72 IEKLPKGVTVGSALQSWMGDGFPVHGGDVYHAINRLRKLGRNKRALELMEWIIRERPYRL 131
Query: 61 KELDYSYLLEFTIKNHGISQGEKLFCCIPKDYQNELLYNNLVIACLDKGVIKLSLEYMKK 120
EL+YSYLLEFT+K HG+SQGEKLF +P+++QNELLYNNLVIACLD+GVI+L+LEYMKK
Sbjct: 132 GELEYSYLLEFTVKLHGVSQGEKLFTRVPQEFQNELLYNNLVIACLDQGVIRLALEYMKK 191
Query: 121 MRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHN 180
MR LG+ S+LV+NRLII NS+PGRRK I L MKADK PHVST+HILMK+EAN+HN
Sbjct: 192 MRELGYRTSHLVYNRLIIRNSAPGRRKLIAKDLALMKADKATPHVSTYHILMKLEANEHN 251
Query: 181 IEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDV 240
I+G++K + MK++ VEPNEVSYCILA AHAVARLYTVAE Y E +EKS+TG+NWSTLD+
Sbjct: 252 IDGVLKAFDGMKKAGVEPNEVSYCILAMAHAVARLYTVAEAYTEEIEKSITGDNWSTLDI 311
Query: 241 LIILYGYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQ 300
L+ILYG L K K+L R W ++ +VRSKSY+LA EAF R+ + RAEELWLEM++VK
Sbjct: 312 LMILYGRLGKEKELARTWNVIRGFHHVRSKSYLLATEAFARVGNLDRAEELWLEMKNVKG 371
Query: 301 LKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFK 360
LK TEQ+NS++SVYCK+G I+KA G+ +EM+ NG KPN+ITYRHLALGC K+ L++E K
Sbjct: 372 LKETEQFNSLLSVYCKDGLIEKAIGVFREMTGNGFKPNSITYRHLALGCAKAKLMKEALK 431
Query: 361 ALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYN 420
+E+G+ L T+K + SSTPWLETTLSIIE FAEKGDV N+E LFEE+K A Y +Y FVYN
Sbjct: 432 NIEMGLNLKTSKSIGSSTPWLETTLSIIECFAEKGDVENSEKLFEEVKNAKYNRYAFVYN 491
Query: 421 TLIKAYVKAKINDPNLLRRMILGGARPDAETYSLLKLAEQFQ 462
L KAYVKAK+ DPNL +RM+LGGARPDAE+YSLLKL EQ++
Sbjct: 492 ALFKAYVKAKVYDPNLFKRMVLGGARPDAESYSLLKLVEQYK 533
>sp|Q9XI21|PPR44_ARATH Pentatricopeptide repeat-containing protein At1g15480,
mitochondrial OS=Arabidopsis thaliana GN=At1g15480 PE=2
SV=2
Length = 594
Score = 183 bits (464), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 122/457 (26%), Positives = 236/457 (51%), Gaps = 9/457 (1%)
Query: 7 GEPVGSAFQSWMREGFPVHRGEIFHSINRLRKLQLNKRALEVMEWVIRERPYRPKELDYS 66
G VGSA W+ +G +R E ++ +LRK ++ RAL++ EW+ + + +E DY+
Sbjct: 139 GLSVGSALDKWVEQGKDTNRKEFESAMLQLRKRRMFGRALQMTEWLDENKQFEMEERDYA 198
Query: 67 YLLEFTIKNHGISQGEKLFCCIPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGH 126
L+ K G +GE IP+ ++ EL+Y L+ + ++ + KM+ LG
Sbjct: 199 CRLDLISKVRGWYKGEAYIKTIPESFRGELVYRTLLANHVATSNVRTAEAVFNKMKDLGF 258
Query: 127 SISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMK 186
+S N+++IL ++K I ++L ++ + + P+++T+ IL+ + + ++I G+ +
Sbjct: 259 PLSTFTCNQMLILYKRVDKKK-IADVLLLLEKENLKPNLNTYKILIDTKGSSNDITGMEQ 317
Query: 187 VYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYG 246
+ MK VE + + ++A +A A L AE ++ +E N L+ +YG
Sbjct: 318 IVETMKSEGVELDLRARALIARHYASAGLKEKAEKVLKEMEGESLEENRHMCKDLLSVYG 377
Query: 247 YLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQ 306
YL + ++ R+W +E P R + AI AFG+I +V AE ++ ++ + ++
Sbjct: 378 YLQREDEVRRVWKICEENP--RYNEVLAAILAFGKIDKVKDAEAVFEKVLKMSHRVSSNV 435
Query: 307 YNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGM 366
Y+ ++ VY + + + L+K+MS +GC A+T+ + ++ VE+ +L
Sbjct: 436 YSVLLRVYVDHKMVSEGKDLVKQMSDSGCNIGALTWDAVIKLYVEAGEVEKAESSLS--- 492
Query: 367 KLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAY 426
K I +K+++ P + + + ++ + +GDV N E +F+ +K+A Y + Y TLI+AY
Sbjct: 493 KAIQSKQIK---PLMSSFMYLMHEYVRRGDVHNTEKIFQRMKQAGYQSRFWAYQTLIQAY 549
Query: 427 VKAKINDPNLLRRMILGGARPDAETYSLLKLAEQFQK 463
V AK + RM P+ + L A+ F+K
Sbjct: 550 VNAKAPAYGMKERMKADNIFPNKRLAAQLAKADPFKK 586
>sp|Q9C977|PP135_ARATH Pentatricopeptide repeat-containing protein At1g80270,
mitochondrial OS=Arabidopsis thaliana GN=At1g80270 PE=1
SV=1
Length = 596
Score = 181 bits (459), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 119/457 (26%), Positives = 234/457 (51%), Gaps = 9/457 (1%)
Query: 7 GEPVGSAFQSWMREGFPVHRGEIFHSINRLRKLQLNKRALEVMEWVIRERPYRPKELDYS 66
G +GSA W+ EG + R EI ++ +LR+ ++ RAL++ EW+ + E DY+
Sbjct: 141 GLSIGSALDKWVEEGNEITRVEIAKAMLQLRRRRMYGRALQMSEWLEANKKIEMTERDYA 200
Query: 67 YLLEFTIKNHGISQGEKLFCCIPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGH 126
L+ T+K G+ +GE IPK ++ E+LY L+ C+ G +K S KM+ LG
Sbjct: 201 SRLDLTVKIRGLEKGEACMQKIPKSFKGEVLYRTLLANCVAAGNVKKSELVFNKMKDLGF 260
Query: 127 SISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMK 186
+S +++++L+ R+K I ++L M+ + + P + T+ IL+ ++ ++I G+ +
Sbjct: 261 PLSGFTCDQMLLLHKRIDRKK-IADVLLLMEKENIKPSLLTYKILIDVKGATNDISGMEQ 319
Query: 187 VYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYG 246
+ MK VE + + + A ++ A L AE ++ +E N L+ +Y
Sbjct: 320 ILETMKDEGVELDFQTQALTARHYSGAGLKDKAEKVLKEMEGESLEANRRAFKDLLSIYA 379
Query: 247 YLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQ 306
L + +++RIW + P + + AI+AFG++ +V AE ++ ++ + + ++
Sbjct: 380 SLGREDEVKRIWKICESKPYF--EESLAAIQAFGKLNKVQEAEAIFEKIVKMDRRASSST 437
Query: 307 YNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGM 366
Y+ ++ VY + + K L+K M+ +GC+ A T+ L ++ VE+ L+
Sbjct: 438 YSVLLRVYVDHKMLSKGKDLVKRMAESGCRIEATTWDALIKLYVEAGEVEKADSLLDKAS 497
Query: 367 KLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAY 426
K TK + +S + I++ ++++GDV N E +F ++++A YT + L++AY
Sbjct: 498 KQSHTKLMMNSFMY------IMDEYSKRGDVHNTEKIFLKMREAGYTSRLRQFQALMQAY 551
Query: 427 VKAKINDPNLLRRMILGGARPDAETYSLLKLAEQFQK 463
+ AK + R+ P+ + L + F+K
Sbjct: 552 INAKSPAYGMRDRLKADNIFPNKSMAAQLAQGDPFKK 588
>sp|O22714|PPR86_ARATH Pentatricopeptide repeat-containing protein At1g60770
OS=Arabidopsis thaliana GN=At1g60770 PE=2 SV=1
Length = 491
Score = 146 bits (368), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 124/445 (27%), Positives = 212/445 (47%), Gaps = 16/445 (3%)
Query: 24 VHRGEIFHSINRLRKLQLNKRALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQGEK 83
V + E+ +I +LR L AL++ E V+ ER D + L+ K I+ GE
Sbjct: 53 VFKWEVGDTIKKLRNRGLYYPALKLSE-VMEERGMNKTVSDQAIHLDLVAKAREITAGEN 111
Query: 84 LFCCIPKDYQNELLYNNLVIACLDKGVIKLSLE-YMKKMRVLGHSISYLVFNRLIILNSS 142
F +P+ + EL Y +L + C K ++ E + KM+ L + S + +N L+ L +
Sbjct: 112 YFVDLPETSKTELTYGSL-LNCYCKELLTEKAEGLLNKMKELNITPSSMSYNSLMTLYTK 170
Query: 143 PGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRS-EVEPNEV 201
G + +P +++++KA+ V P T+++ M+ A ++I G+ +V +M R V P+
Sbjct: 171 TGETEKVPAMIQELKAENVMPDSYTYNVWMRALAATNDISGVERVIEEMNRDGRVAPDWT 230
Query: 202 SYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATV 261
+Y +A+ + A L AE ++ LE T +++ LI LYG L K ++ RIW ++
Sbjct: 231 TYSNMASIYVDAGLSQKAEKALQELEMKNTQRDFTAYQFLITLYGRLGKLTEVYRIWRSL 290
Query: 262 Q-ELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFI 320
+ +P + +Y+ I+ ++ + AE L+ E Q+ N +I Y + G I
Sbjct: 291 RLAIPKTSNVAYLNMIQVLVKLNDLPGAETLFKEWQANCSTYDIRIVNVLIGAYAQEGLI 350
Query: 321 DKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEG--FKALELGMKLITTKKVRSST 378
KA+ L ++ G K NA T+ F V+ G +ALE K ++ K
Sbjct: 351 QKANELKEKAPRRGGKLNAKTWE-----IFMDYYVKSGDMARALECMSKAVSIGK-GDGG 404
Query: 379 PWL---ETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKINDPN 435
WL ET +++ F +K DV AENL E LK ++ LI+ Y A + P
Sbjct: 405 KWLPSPETVRALMSYFEQKKDVNGAENLLEILKNGTDNIGAEIFEPLIRTYAAAGKSHPA 464
Query: 436 LLRRMILGGARPDAETYSLLKLAEQ 460
+ RR+ + + T LL Q
Sbjct: 465 MRRRLKMENVEVNEATKKLLDEVSQ 489
>sp|Q9LRP6|PP234_ARATH Pentatricopeptide repeat-containing protein At3g15590,
mitochondrial OS=Arabidopsis thaliana GN=At3g15590 PE=2
SV=1
Length = 610
Score = 132 bits (333), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 113/458 (24%), Positives = 217/458 (47%), Gaps = 17/458 (3%)
Query: 10 VGSAFQSWMREGFPVHRGEIFHSINRLRKLQLNKRALEVMEWVIRERPYRPKELDYSYLL 69
V + W++EG + + E+ +I+ LRK + L++ EW+ + E +Y+ L
Sbjct: 157 VKHVLEKWVKEGKDLSQAEVTLAIHNLRKRKSYAMCLQLWEWLGANTQFEFTEANYASQL 216
Query: 70 EFTIKNHGISQGEKLFCCIPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSIS 129
+ K H + + E IP+ + E++Y L+ C+ K + + + KM+ L S
Sbjct: 217 DLVAKVHSLQKAEIFLKDIPESSRGEVVYRTLLANCVLKHHVNKAEDIFNKMKELKFPTS 276
Query: 130 YLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYS 189
N+L++L S R+K I ++L M+ + + P +T+H L+ + +I G+ K+
Sbjct: 277 VFACNQLLLLYSMHDRKK-ISDVLLLMERENIKPSRATYHFLINSKGLAGDITGMEKIVE 335
Query: 190 DMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALE-KSMTGNNWSTLDVLIILYGYL 248
+K +E + ILA + A L A+ ++ +E K + W L+ LY +
Sbjct: 336 TIKEEGIELDPELQSILAKYYIRAGLKERAQDLMKEIEGKGLQQTPW-VCRSLLPLYADI 394
Query: 249 AKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYN 308
++ R+ V + P R + + AI+A+G++ +V AE ++ + ++ Y
Sbjct: 395 GDSDNVRRLSRFVDQNP--RYDNCISAIKAWGKLKEVEEAEAVFERLVEKYKIFPMMPYF 452
Query: 309 SVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELG-MK 367
+++ +Y +N + K L+K M G T+ LV+ KA E+G +
Sbjct: 453 ALMEIYTENKMLAKGRDLVKRMGNAGIAIGPSTWHA---------LVKLYIKAGEVGKAE 503
Query: 368 LITTKKVRSST--PWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKA 425
LI + + + P T ++I+E +A++GDV N E +F ++K+A+Y Y T++ A
Sbjct: 504 LILNRATKDNKMRPMFTTYMAILEEYAKRGDVHNTEKVFMKMKRASYAAQLMQYETVLLA 563
Query: 426 YVKAKINDPNLLRRMILGGARPDAETYSLLKLAEQFQK 463
Y+ AK ++ RM P+ + L F+K
Sbjct: 564 YINAKTPAYGMIERMKADNVFPNKSLAAKLAQVNPFKK 601
>sp|Q9SY07|PP302_ARATH Pentatricopeptide repeat-containing protein At4g02820,
mitochondrial OS=Arabidopsis thaliana GN=At4g02820 PE=2
SV=1
Length = 532
Score = 118 bits (295), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 105/451 (23%), Positives = 201/451 (44%), Gaps = 8/451 (1%)
Query: 13 AFQSWMREGFPVHRGEIFHSINRLRKLQLNKRALEVMEWVIRERPYRPKELDYSYLLEFT 72
+ W EG V + E+ + LRK++ K ALE+ EW++ + + + DY+ L+
Sbjct: 80 TIRKWKEEGHSVRKYELNRIVRELRKIKRYKHALEICEWMVVQEDIKLQAGDYAVHLDLI 139
Query: 73 IKNHGISQGEKLFCCIPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLV 132
K G++ EK F +P + +L+ + + + + +KM G S L
Sbjct: 140 SKIRGLNSAEKFFEDMPDQMRGHAACTSLLHSYVQNKLSDKAEALFEKMGECGFLKSCLP 199
Query: 133 FNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMK 192
+N ++ + S G+ + +P +++++K + +P + T+++ + A+ +++EG KVY K
Sbjct: 200 YNHMLSMYISRGQFEKVPVLIKELKI-RTSPDIVTYNLWLTAFASGNDVEGAEKVYLKAK 258
Query: 193 RSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGK 252
++ P+ V+Y +L +A A ++ +EK ++ N LI L+ L
Sbjct: 259 EEKLNPDWVTYSVLTNLYAKTDNVEKARLALKEMEKLVSKKNRVAYASLISLHANLGDKD 318
Query: 253 DLERIWATVQ-ELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVI 311
+ W V+ + Y+ I A ++ + +A+ L+ E +SV N ++
Sbjct: 319 GVNLTWKKVKSSFKKMNDAEYLSMISAVVKLGEFEQAKGLYDEWESVSGTGDARIPNLIL 378
Query: 312 SVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITT 371
+ Y + + + G P+ T+ L K +E K L+ K I +
Sbjct: 379 AEYMNRDEVLLGEKFYERIVEKGINPSYSTWEILTWAYLKRKDME---KVLDCFGKAIDS 435
Query: 372 KKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKI 431
V+ T + + E+G+V AE L L+KA Y T +YN+L++ Y KA
Sbjct: 436 --VKKWTVNVRLVKGACKELEEQGNVKGAEKLMTLLQKAGYVN-TQLYNSLLRTYAKAGE 492
Query: 432 NDPNLLRRMILGGARPDAETYSLLKLAEQFQ 462
+ RM D ET L++L Q +
Sbjct: 493 MALIVEERMAKDNVELDEETKELIRLTSQMR 523
>sp|Q8LPS6|PPR3_ARATH Pentatricopeptide repeat-containing protein At1g02150
OS=Arabidopsis thaliana GN=At1g02150 PE=2 SV=2
Length = 524
Score = 113 bits (283), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 94/407 (23%), Positives = 182/407 (44%), Gaps = 12/407 (2%)
Query: 10 VGSAFQSWMREGFPVHRGEIFHSINRLRKLQLNKRALEVMEWVI-RERPYRPKELDYSYL 68
S W + G + + E+ + LRK + +ALEV +W+ R +R D +
Sbjct: 83 AASVLNQWEKAGRKLTKWELCRVVKELRKYKRANQALEVYDWMNNRGERFRLSASDAAIQ 142
Query: 69 LEFTIKNHGISQGEKLFCCIPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSI 128
L+ K GI E+ F +P+++++ +Y +L+ A + + + + MR G+++
Sbjct: 143 LDLIGKVRGIPDAEEFFLQLPENFKDRRVYGSLLNAYVRAKSREKAEALLNTMRDKGYAL 202
Query: 129 SYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVY 188
L FN ++ L + + ++ +MK + + +++I + + ++E + VY
Sbjct: 203 HPLPFNVMMTLYMNLREYDKVDAMVFEMKQKDIRLDIYSYNIWLSSCGSLGSVEKMELVY 262
Query: 189 SDMKRS-EVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGY 247
MK + PN ++ +AT + AE + +E +TG N L+ LYG
Sbjct: 263 QQMKSDVSIYPNWTTFSTMATMYIKMGETEKAEDALRKVEARITGRNRIPYHYLLSLYGS 322
Query: 248 LAKGKDLERIWATVQEL-PNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQ 306
L K+L R+W + + P++ + Y + + R+ + AE+++ E VK
Sbjct: 323 LGNKKELYRVWHVYKSVVPSIPNLGYHALVSSLVRMGDIEGAEKVYEEWLPVKSSYDPRI 382
Query: 307 YNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGM 366
N +++ Y KN ++ A GL M G KP++ T+ LA+G + + E L
Sbjct: 383 PNLLMNAYVKNDQLETAEGLFDHMVEMGGKPSSSTWEILAVGHTRKRCISEALTCLRNAF 442
Query: 367 KLITTKKVRSSTPWLETTLSIIEIFA---EKGDVGNAENLFEELKKA 410
S+ W L + F E+ DV + E + E L+++
Sbjct: 443 ------SAEGSSNWRPKVLMLSGFFKLCEEESDVTSKEAVLELLRQS 483
Score = 38.9 bits (89), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 49/194 (25%), Positives = 85/194 (43%), Gaps = 16/194 (8%)
Query: 271 SYVLAIEAFGRIAQVSRAEELWLEMQS-VKQLKATEQYNSVISVYCKNGFIDKASGLLKE 329
SY + + + G + V + E ++ +M+S V ++++ ++Y K G +KA L++
Sbjct: 241 SYNIWLSSCGSLGSVEKMELVYQQMKSDVSIYPNWTTFSTMATMYIKMGETEKAEDALRK 300
Query: 330 MSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIE 389
+ N I Y +L L + S G K EL K V S P L +++
Sbjct: 301 VEARITGRNRIPYHYL-LSLYGS----LGNKK-ELYRVWHVYKSVVPSIPNLGYH-ALVS 353
Query: 390 IFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKINDP-----NLLRRMILGG 444
GD+ AE ++EE + + N L+ AYVK ND L M+ G
Sbjct: 354 SLVRMGDIEGAEKVYEEWLPVKSSYDPRIPNLLMNAYVK---NDQLETAEGLFDHMVEMG 410
Query: 445 ARPDAETYSLLKLA 458
+P + T+ +L +
Sbjct: 411 GKPSSSTWEILAVG 424
>sp|Q84JR3|PP334_ARATH Pentatricopeptide repeat-containing protein At4g21705,
mitochondrial OS=Arabidopsis thaliana GN=At4g21705 PE=2
SV=1
Length = 492
Score = 108 bits (269), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 99/458 (21%), Positives = 210/458 (45%), Gaps = 11/458 (2%)
Query: 5 PRGEPVGSAF---QSWMREGFPVHRGEIFHSINRLRKLQLNKRALEVMEWVIRERPYRPK 61
P G+P S + Q+W++ G V E+ ++ LR+ + ALEV +W+
Sbjct: 33 PLGDPKSSVYPELQNWVQCGKKVSVAELIRIVHDLRRRKRFLHALEVSKWMNETGVCVFS 92
Query: 62 ELDYSYLLEFTIKNHGISQGEKLFCCIPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKM 121
+++ L+ + +G E+ F + + Y+N+ Y L+ + + ++ SL + +KM
Sbjct: 93 PTEHAVHLDLIGRVYGFVTAEEYFENLKEQYKNDKTYGALLNCYVRQQNVEKSLLHFEKM 152
Query: 122 RVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNI 181
+ +G S L +N ++ L ++ G+ + +P +L +MK + VAP ++ I + +++
Sbjct: 153 KEMGFVTSSLTYNNIMCLYTNIGQHEKVPKVLEEMKEENVAPDNYSYRICINAFGAMYDL 212
Query: 182 EGLMKVYSDM-KRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDV 240
E + DM +R ++ + +Y + A + A ++ E + + +
Sbjct: 213 ERIGGTLRDMERRQDITMDWNTYAVAAKFYIDGGDCDRAVELLKMSENRLEKKDGEGYNH 272
Query: 241 LIILYGYLAKGKDLERIWATVQELPNVR-SKSYVLAIEAFGRIAQVSRAEELWLEMQSVK 299
LI LY L K ++ R+W +++ R ++ Y+ +++ +I + AEE+ E +S
Sbjct: 273 LITLYARLGKKIEVLRLWDLEKDVCKRRINQDYLTVLQSLVKIDALVEAEEVLTEWKSSG 332
Query: 300 QLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGF 359
N+VI Y +KA +L++++ G ++ +A + +E F
Sbjct: 333 NCYDFRVPNTVIRGYIGKSMEEKAEAMLEDLARRGKATTPESWELVATAYAEKGTLENAF 392
Query: 360 KALELGMKL-ITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFV 418
K ++ + + + ++K R P L S++ ++G + E+ L+ +
Sbjct: 393 KCMKTALGVEVGSRKWR---PGLTLVTSVLSWVGDEGSLKEVESFVASLRNCIGVNKQ-M 448
Query: 419 YNTLIKAYVK-AKINDPNLLRRMILGGARPDAETYSLL 455
Y+ L+KA ++ N LL+RM D ET +L
Sbjct: 449 YHALVKADIREGGRNIDTLLQRMKDDKIEIDEETTVIL 486
>sp|Q93WC5|PP300_ARATH Pentatricopeptide repeat-containing protein At4g01990,
mitochondrial OS=Arabidopsis thaliana GN=At4g01990 PE=2
SV=1
Length = 502
Score = 107 bits (268), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 107/455 (23%), Positives = 195/455 (42%), Gaps = 16/455 (3%)
Query: 7 GEPVGSAFQSWMREGFPVHRGEIFHSINRLRKLQLNKRALEVMEWVIRERPYRPKELDYS 66
G + ++ EG PV + ++ LRK + +RALE+ EW+ R+ D++
Sbjct: 53 GGKMEETLNQFVMEGVPVKKHDLIRYAKDLRKFRQPQRALEIFEWMERKEIAFTGS-DHA 111
Query: 67 YLLEFTIKNHGISQGEKLFCCIPKDYQNELLYNNLV-IACLDKGVIKLSLEYMKKMRVLG 125
L K+ G+ E F + +N+ Y +L+ C++K +K + + M L
Sbjct: 112 IRLNLIAKSKGLEAAETYFNSLDDSIKNQSTYGSLLNCYCVEKEEVKAKAHF-ENMVDLN 170
Query: 126 HSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLM 185
H + L FN L+ + G+ + +P ++ MK + P T+ + ++ + +++G+
Sbjct: 171 HVSNSLPFNNLMAMYMGLGQPEKVPALVVAMKEKSITPCDITYSMWIQSCGSLKDLDGVE 230
Query: 186 KVYSDMK-RSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIIL 244
KV +MK E + ++ LA + LY AE +++LE +M + LI L
Sbjct: 231 KVLDEMKAEGEGIFSWNTFANLAAIYIKVGLYGKAEEALKSLENNMNPDVRDCYHFLINL 290
Query: 245 YGYLAKGKDLERIWATVQE-LPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKA 303
Y +A ++ R+W +++ PNV + SY+ + A ++ + ++++ E +S
Sbjct: 291 YTGIANASEVYRVWDLLKKRYPNVNNSSYLTMLRALSKLDDIDGVKKVFAEWESTCWTYD 350
Query: 304 TEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALE 363
N IS Y K ++A + +M CK R L + N +
Sbjct: 351 MRMANVAISSYLKQNMYEEAEAVFNG-AMKKCKGQFSKARQLLMMHLLKN------DQAD 403
Query: 364 LGMKLITTKKVRSSTPWL---ETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYN 420
L +K + W E S F E DV AE + L K + + Y
Sbjct: 404 LALKHFEAAVLDQDKNWTWSSELISSFFLHFEEAKDVDGAEEFCKTLTKWSPLS-SETYT 462
Query: 421 TLIKAYVKAKINDPNLLRRMILGGARPDAETYSLL 455
L+K Y+ A P++ +R+ G D E LL
Sbjct: 463 LLMKTYLAAGKACPDMKKRLEEQGILVDEEQECLL 497
>sp|Q9FZ24|PPR4_ARATH Pentatricopeptide repeat-containing protein At1g02370,
mitochondrial OS=Arabidopsis thaliana GN=At1g02370 PE=2
SV=1
Length = 537
Score = 105 bits (263), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 100/460 (21%), Positives = 204/460 (44%), Gaps = 20/460 (4%)
Query: 7 GEPVGSAFQSWMREGFPVHRGEIFHSINRLRKLQLNKRALEVMEWVIRERPYRPKELDYS 66
G V ++ EG V + ++F LRK + + A E+ +W + +R D++
Sbjct: 84 GGTVAETLNQFIMEGITVRKDDLFRCAKTLRKFRRPQHAFEIFDW-MEKRKMTFSVSDHA 142
Query: 67 YLLEFTIKNHGISQGEKLFCCIPKDYQNELLYNNLVIAC----LDKGVIKLSLEYMKKMR 122
L+ K G+ E F + +N ++ C L++ K E M ++
Sbjct: 143 ICLDLIGKTKGLEAAENYFNNLDPSAKNHQSTYGALMNCYCVELEEEKAKAHFEIMDELN 202
Query: 123 VLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIE 182
+ +S L FN ++ + + + +P ++ MK ++P T+ I M+ + ++++
Sbjct: 203 FVNNS---LPFNNMMSMYMRLSQPEKVPVLVDAMKQRGISPCGVTYSIWMQSCGSLNDLD 259
Query: 183 GLMKVYSDM-KRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVL 241
GL K+ +M K SE + ++ LA + A LY A++ ++++E+ M NN + L
Sbjct: 260 GLEKIIDEMGKDSEAKTTWNTFSNLAAIYTKAGLYEKADSALKSMEEKMNPNNRDSHHFL 319
Query: 242 IILYGYLAKGKDLERIWATVQEL-PNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQ 300
+ LY ++KG ++ R+W ++++ P V + SY++ ++A ++ + ++++ E +S
Sbjct: 320 MSLYAGISKGPEVYRVWESLKKARPEVNNLSYLVMLQAMSKLGDLDGIKKIFTEWESKCW 379
Query: 301 LKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFK 360
N I+ Y K ++A +L P + + L + +++ + K
Sbjct: 380 AYDMRLANIAINTYLKGNMYEEAEKILDGAMKKSKGPFSKARQLLMIHLLENDKADLAMK 439
Query: 361 ALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKG-DVGNAEN---LFEELKKANYTKYT 416
LE + + + + W +S+ + EK DV AE+ + K + T
Sbjct: 440 HLEAAVS--DSAENKDEWGWSSELVSLFFLHFEKAKDVDGAEDFCKILSNWKPLDSETMT 497
Query: 417 FVYNTLIKAYVKAKINDPNLLRRMILGGARPDAETYSLLK 456
F LIK Y A+ P++ R+ E LLK
Sbjct: 498 F----LIKTYAAAEKTSPDMRERLSQQQIEVSEEIQDLLK 533
>sp|Q9SKU6|PP166_ARATH Pentatricopeptide repeat-containing protein At2g20710,
mitochondrial OS=Arabidopsis thaliana GN=At2g20710 PE=2
SV=1
Length = 490
Score = 100 bits (250), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 86/353 (24%), Positives = 157/353 (44%), Gaps = 17/353 (4%)
Query: 7 GEPVGS---AFQSWMREGFPVHRGEIFHSINRLRKLQLNKRALEVMEWVIRERPYRPKEL 63
G+P S W+ +G V E+ I LRK AL++ +W+ R + E
Sbjct: 48 GDPSASIIKVLDGWLDQGNLVKTSELHSIIKMLRKFSRFSHALQISDWMSEHRVHEISEG 107
Query: 64 DYSYLLEFTIKNHGISQGEKLFCCIPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMRV 123
D + L+ K G+ + EK F IP + +N LY L+ K V+ + + ++M+
Sbjct: 108 DVAIRLDLIAKVGGLGEAEKFFETIPMERRNYHLYGALLNCYASKKVLHKAEQVFQEMKE 167
Query: 124 LGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEG 183
LG L +N ++ L G+ + +LR+M+ + V P + T + + + ++EG
Sbjct: 168 LGFLKGCLPYNVMLNLYVRTGKYTMVEKLLREMEDETVKPDIFTVNTRLHAYSVVSDVEG 227
Query: 184 LMKVYSDMKRSEVEP----NEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWS--- 236
+ K + R E + + +Y A + A L E +E L KS N
Sbjct: 228 MEKF---LMRCEADQGLHLDWRTYADTANGYIKAGL---TEKALEMLRKSEQMVNAQKRK 281
Query: 237 -TLDVLIILYGYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEM 295
+VL+ YG K +++ R+W+ +EL + Y+ I A ++ + E++ E
Sbjct: 282 HAYEVLMSFYGAAGKKEEVYRLWSLYKELDGFYNTGYISVISALLKMDDIEEVEKIMEEW 341
Query: 296 QSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALG 348
++ L + +I+ YCK G ++KA ++ + + T+ LALG
Sbjct: 342 EAGHSLFDIRIPHLLITGYCKKGMMEKAEEVVNILVQKWRVEDTSTWERLALG 394
>sp|Q94B59|PP372_ARATH Pentatricopeptide repeat-containing protein At5g09450,
mitochondrial OS=Arabidopsis thaliana GN=At5g09450 PE=2
SV=1
Length = 409
Score = 98.2 bits (243), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 87/345 (25%), Positives = 166/345 (48%), Gaps = 20/345 (5%)
Query: 3 RLPRGEPVGSAFQSWMREGFPVHRGEIFHSINRLRKLQLNKRALEVMEWVIRERPYRPKE 62
RLP+ + + W+ EG + E+ LR+ + K ALEV EW+++ + +
Sbjct: 65 RLPK-RSATTVLEKWIGEGNQMTINELREISKELRRTRRYKHALEVTEWMVQHEESKISD 123
Query: 63 LDYSYLLEFTIKNHGISQGEKLFCCIPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMR 122
DY+ ++ K GI E+ F + D + Y +L+ A + + K++
Sbjct: 124 ADYASRIDLISKVFGIDAAERYFEGLDIDSKTAETYTSLLHAYAASKQTERAEALFKRI- 182
Query: 123 VLGHSISY--LVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHN 180
+ S+++ + +N ++ L S G+ + +P ++ +K KV+P + T+++ + A N
Sbjct: 183 IESDSLTFGAITYNEMMTLYMSVGQVEKVPEVIEVLKQKKVSPDIFTYNLWLSSCAATFN 242
Query: 181 IEGLMKVYSDMKRSEVEPNE--VSYCILATAHAVARLYTVAETY--VEALEKSMTGNNWS 236
I+ L K+ +M R + NE V Y L + + + T AE+ VEA EKS++ W
Sbjct: 243 IDELRKILEEM-RHDASSNEGWVRYIDLTSIYINSSRVTNAESTLPVEA-EKSISQREWI 300
Query: 237 TLDVLIILYGYLAKGKDLERIWATVQELPNV-RSKSYVLAIEAFGRIAQVSRAEELWLEM 295
T D L+IL+ L +++IW +++ + S+SY+ + ++ + + AEE+ +
Sbjct: 301 TYDFLMILHTGLGNKVMIDQIWKSLRNTNQILSSRSYICVLSSYLMLGHLREAEEI---I 357
Query: 296 QSVKQLKATEQYNSVISVYCKNGFIDK-----ASGLLKEMSMNGC 335
K+ K TE +++ + N F D ASG + N C
Sbjct: 358 HQWKESKTTE-FDASACLRILNAFRDVGLEGIASGFHLILVHNKC 401
>sp|Q9S7Q2|PP124_ARATH Pentatricopeptide repeat-containing protein At1g74850,
chloroplastic OS=Arabidopsis thaliana GN=PTAC2 PE=2 SV=1
Length = 862
Score = 95.9 bits (237), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 104/435 (23%), Positives = 185/435 (42%), Gaps = 69/435 (15%)
Query: 26 RGEIFHSINRLR-KLQLNKRALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQGEKL 84
RG I ++ + KL LN AL E+ R R L + Y+ ++
Sbjct: 89 RGSIARCLDIFKNKLSLNDFALVFKEFAGRGDWQRSLRL-FKYM-------------QRQ 134
Query: 85 FCCIPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPG 144
C P NE +Y ++ +G++ LE +M G S S + LI G
Sbjct: 135 IWCKP----NEHIYTIMISLLGREGLLDKCLEVFDEMPSQGVSRSVFSYTALINAYGRNG 190
Query: 145 RRKTIPNILRQMKADKVAPHVSTFHILMKIEANDH-NIEGLMKVYSDMKRSEVEPNEVSY 203
R +T +L +MK +K++P + T++ ++ A + EGL+ ++++M+ ++P+ V+Y
Sbjct: 191 RYETSLELLDRMKNEKISPSILTYNTVINACARGGLDWEGLLGLFAEMRHEGIQPDIVTY 250
Query: 204 CILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQE 263
L +A A+ L G + E ++ T+ +
Sbjct: 251 NTLLSACAIRGL-----------------------------------GDEAEMVFRTMND 275
Query: 264 ---LPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFI 320
+P++ + S++ +E FG++ ++ + +L EM S L YN ++ Y K+G I
Sbjct: 276 GGIVPDLTTYSHL--VETFGKLRRLEKVCDLLGEMASGGSLPDITSYNVLLEAYAKSGSI 333
Query: 321 DKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPW 380
+A G+ +M GC PNA TY L L F + + + L L MK T P
Sbjct: 334 KEAMGVFHQMQAAGCTPNANTYSVL-LNLFGQSGRYDDVRQLFLEMKSSNTD------PD 386
Query: 381 LETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKINDP--NLLR 438
T +IE+F E G LF ++ + N Y +I A K +++ +L+
Sbjct: 387 AATYNILIEVFGEGGYFKEVVTLFHDMVEENIEPDMETYEGIIFACGKGGLHEDARKILQ 446
Query: 439 RMILGGARPDAETYS 453
M P ++ Y+
Sbjct: 447 YMTANDIVPSSKAYT 461
Score = 60.8 bits (146), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 64/314 (20%), Positives = 130/314 (41%), Gaps = 14/314 (4%)
Query: 133 FNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMK 192
+N L+ + G K + QM+A P+ +T+ +L+ + + + +++ +MK
Sbjct: 320 YNVLLEAYAKSGSIKEAMGVFHQMQAAGCTPNANTYSVLLNLFGQSGRYDDVRQLFLEMK 379
Query: 193 RSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGK 252
S +P+ +Y IL + T + + + T + +I G +
Sbjct: 380 SSNTDPDAATYNILIEVFGEGGYFKEVVTLFHDMVEENIEPDMETYEGIIFACGKGGLHE 439
Query: 253 DLERI--WATVQEL-PNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNS 309
D +I + T ++ P+ SK+Y IEAFG+ A A + M V + E ++S
Sbjct: 440 DARKILQYMTANDIVPS--SKAYTGVIEAFGQAALYEEALVAFNTMHEVGSNPSIETFHS 497
Query: 310 VISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLI 369
++ + + G + ++ +L + +G N T+ + EE K +
Sbjct: 498 LLYSFARGGLVKESEAILSRLVDSGIPRNRDTFNAQIEAYKQGGKFEEAVKT------YV 551
Query: 370 TTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKA 429
+K R P T +++ +++ V FEE+K ++ Y ++ Y K
Sbjct: 552 DMEKSRCD-PDERTLEAVLSVYSFARLVDECREQFEEMKASDILPSIMCYCMMLAVYGKT 610
Query: 430 -KINDPN-LLRRMI 441
+ +D N LL M+
Sbjct: 611 ERWDDVNELLEEML 624
Score = 59.7 bits (143), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 59/224 (26%), Positives = 97/224 (43%), Gaps = 16/224 (7%)
Query: 240 VLIILYGYLAKGKDLERIWATVQELPN---VRSK-SYVLAIEAFGRIAQVSRAEELWLEM 295
+ I+ L + L++ E+P+ RS SY I A+GR + + EL M
Sbjct: 143 IYTIMISLLGREGLLDKCLEVFDEMPSQGVSRSVFSYTALINAYGRNGRYETSLELLDRM 202
Query: 296 QSVKQLKATEQYNSVISVYCKNGFIDKAS--GLLKEMSMNGCKPNAITYRHLALGCFKSN 353
++ K + YN+VI+ C G +D GL EM G +P+ +TY L C
Sbjct: 203 KNEKISPSILTYNTVINA-CARGGLDWEGLLGLFAEMRHEGIQPDIVTYNTLLSACAIRG 261
Query: 354 LVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYT 413
L +E E+ + + + P L T ++E F + + +L E+
Sbjct: 262 LGDEA----EMVFRTMNDGGI---VPDLTTYSHLVETFGKLRRLEKVCDLLGEMASGGSL 314
Query: 414 KYTFVYNTLIKAYVKA-KINDP-NLLRRMILGGARPDAETYSLL 455
YN L++AY K+ I + + +M G P+A TYS+L
Sbjct: 315 PDITSYNVLLEAYAKSGSIKEAMGVFHQMQAAGCTPNANTYSVL 358
Score = 32.7 bits (73), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 27/132 (20%), Positives = 56/132 (42%)
Query: 98 YNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMK 157
Y ++ A + + +L M +G + S F+ L+ + G K IL ++
Sbjct: 460 YTGVIEAFGQAALYEEALVAFNTMHEVGSNPSIETFHSLLYSFARGGLVKESEAILSRLV 519
Query: 158 ADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYT 217
+ + TF+ ++ E +K Y DM++S +P+E + + + ++ ARL
Sbjct: 520 DSGIPRNRDTFNAQIEAYKQGGKFEEAVKTYVDMEKSRCDPDERTLEAVLSVYSFARLVD 579
Query: 218 VAETYVEALEKS 229
E ++ S
Sbjct: 580 ECREQFEEMKAS 591
>sp|Q9LS88|PP250_ARATH Pentatricopeptide repeat-containing protein At3g23020
OS=Arabidopsis thaliana GN=At3g23020 PE=2 SV=1
Length = 842
Score = 94.7 bits (234), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 82/333 (24%), Positives = 152/333 (45%), Gaps = 15/333 (4%)
Query: 98 YNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMK 157
YN ++ G IK + E K+M G + + FN +I + + G+ + ++++ MK
Sbjct: 301 YNTMIDTYGKSGQIKEASETFKRMLEEGIVPTTVTFNTMIHIYGNNGQLGEVTSLMKTMK 360
Query: 158 ADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYT 217
AP T++IL+ + +++IE + +MK ++P+ VSY L A ++ +
Sbjct: 361 L-HCAPDTRTYNILISLHTKNNDIERAGAYFKEMKDDGLKPDPVSYRTLLYAFSIRHMVE 419
Query: 218 VAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQEL---PNVRSKSYVL 274
AE + ++ + T L +Y + + LE+ W+ + N+ S+ Y
Sbjct: 420 EAEGLIAEMDDDNVEIDEYTQSALTRMY---VEAEMLEKSWSWFKRFHVAGNMSSEGYSA 476
Query: 275 AIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNG 334
I+A+G +S AE +++ Q V + E YN +I Y + +KA L + M G
Sbjct: 477 NIDAYGERGYLSEAERVFICCQEVNKRTVIE-YNVMIKAYGISKSCEKACELFESMMSYG 535
Query: 335 CKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEK 394
P+ TY L +++ +G LE K+ T V P+ ++I F +
Sbjct: 536 VTPDKCTYNTLVQILASADMPHKGRCYLE---KMRETGYVSDCIPY----CAVISSFVKL 588
Query: 395 GDVGNAENLFEELKKANYTKYTFVYNTLIKAYV 427
G + AE +++E+ + N VY LI A+
Sbjct: 589 GQLNMAEEVYKEMVEYNIEPDVVVYGVLINAFA 621
Score = 60.1 bits (144), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 81/372 (21%), Positives = 156/372 (41%), Gaps = 50/372 (13%)
Query: 126 HSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLM 185
+ ++ + +N ++ + + + + ++ +M + P ST+ L+ + + +G +
Sbjct: 183 YELNVIHYNIMLRILGKACKWRYVQSLWDEMIRKGIKPINSTYGTLIDVYS-----KGGL 237
Query: 186 KVYS-----DMKRSEVEPNEVSYCILATAHAVARLYTVAETYV------EALEKSMTGNN 234
KV++ M + ++P+EV+ I+ + AR + AE + E S +
Sbjct: 238 KVHALCWLGKMSKIGMQPDEVTTGIVLQMYKKAREFQKAEEFFKKWSCDENKADSHVCLS 297
Query: 235 WSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSK-SYVLAIEAFGRIAQVSRAEELWL 293
T + +I YG + K+ + + E V + ++ I +G Q+ L
Sbjct: 298 SYTYNTMIDTYGKSGQIKEASETFKRMLEEGIVPTTVTFNTMIHIYGNNGQLGEVTSLMK 357
Query: 294 EMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSN 353
M+ + T YN +IS++ KN I++A KEM +G KP+ ++YR L +
Sbjct: 358 TMK-LHCAPDTRTYNILISLHTKNNDIERAGAYFKEMKDDGLKPDPVSYRTLLYAFSIRH 416
Query: 354 LVEEG----------------FKALELGMKLITTKKVRSSTPWL-----------ETTLS 386
+VEE + L + + + S W E +
Sbjct: 417 MVEEAEGLIAEMDDDNVEIDEYTQSALTRMYVEAEMLEKSWSWFKRFHVAGNMSSEGYSA 476
Query: 387 IIEIFAEKGDVGNAENLFEELKKANYTKYTFV-YNTLIKAYVKAKINDP--NLLRRMILG 443
I+ + E+G + AE +F ++ N K T + YN +IKAY +K + L M+
Sbjct: 477 NIDAYGERGYLSEAERVFICCQEVN--KRTVIEYNVMIKAYGISKSCEKACELFESMMSY 534
Query: 444 GARPDAETYSLL 455
G PD TY+ L
Sbjct: 535 GVTPDKCTYNTL 546
Score = 58.5 bits (140), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 68/342 (19%), Positives = 145/342 (42%), Gaps = 16/342 (4%)
Query: 61 KELDYSYLLEFT--IKNHGISQGEKLFCCIPKDYQ------NELLYNNLVIACLDKGVIK 112
+E++ ++E+ IK +GIS+ + C + + ++ YN LV +
Sbjct: 498 QEVNKRTVIEYNVMIKAYGISKSCEKACELFESMMSYGVTPDKCTYNTLVQILASADMPH 557
Query: 113 LSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILM 172
Y++KMR G+ + + +I G+ + ++M + P V + +L+
Sbjct: 558 KGRCYLEKMRETGYVSDCIPYCAVISSFVKLGQLNMAEEVYKEMVEYNIEPDVVVYGVLI 617
Query: 173 KIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTG 232
A+ N++ M MK + + N V Y L + AE L +S
Sbjct: 618 NAFADTGNVQQAMSYVEAMKEAGIPGNSVIYNSLIKLYTKVGYLDEAEAIYRKLLQSCNK 677
Query: 233 NNWS---TLDVLIILYGYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAE 289
+ T + +I LY + + E I+ ++++ ++ + + + + + A
Sbjct: 678 TQYPDVYTSNCMINLYSERSMVRKAEAIFDSMKQRGEANEFTFAMMLCMYKKNGRFEEAT 737
Query: 290 ELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGC 349
++ +M+ +K L YNSV+ ++ +G +A KEM +G +P+ T++ L
Sbjct: 738 QIAKQMREMKILTDPLSYNSVLGLFALDGRFKEAVETFKEMVSSGIQPDDSTFKSLGTIL 797
Query: 350 FKSNLVEEGFKALELGMKLITTKKV-RSSTPWLETTLSIIEI 390
K + ++ + +E I K++ R W+ T S++ I
Sbjct: 798 MKLGMSKKAVRKIE----EIRKKEIKRGLELWISTLSSLVGI 835
>sp|O82178|PP186_ARATH Pentatricopeptide repeat-containing protein At2g35130
OS=Arabidopsis thaliana GN=At2g35130 PE=2 SV=1
Length = 591
Score = 94.0 bits (232), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 101/437 (23%), Positives = 190/437 (43%), Gaps = 23/437 (5%)
Query: 33 INRLRKLQLNKR---ALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQGEKLFCCI- 88
IN +L+LNK+ + V EW++R+ ++P + ++ L++ + + E L+ +
Sbjct: 123 INVSVQLRLNKKWDSIILVCEWILRKSSFQPDVICFNLLIDAYGQKFQYKEAESLYVQLL 182
Query: 89 -PKDYQNELLYNNLVIACLDKGVIK---LSLEYMKKMRVLGHSISYLVFNRLI-ILNSSP 143
+ E Y L+ A G+I+ + L M+ V +I V+N I L
Sbjct: 183 ESRYVPTEDTYALLIKAYCMAGLIERAEVVLVEMQNHHVSPKTIGVTVYNAYIEGLMKRK 242
Query: 144 GRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSY 203
G + ++ ++MK D+ P T+++++ + K+Y +M+ + +PN +Y
Sbjct: 243 GNTEEAIDVFQRMKRDRCKPTTETYNLMINLYGKASKSYMSWKLYCEMRSHQCKPNICTY 302
Query: 204 CILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQE 263
L A A L AE E L++ + + L+ Y I++ +Q
Sbjct: 303 TALVNAFAREGLCEKAEEIFEQLQEDGLEPDVYVYNALMESYSRAGYPYGAAEIFSLMQH 362
Query: 264 LPNVRSK-SYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDK 322
+ + SY + ++A+GR S AE ++ EM+ + + + ++S Y K + K
Sbjct: 363 MGCEPDRASYNIMVDAYGRAGLHSDAEAVFEEMKRLGIAPTMKSHMLLLSAYSKARDVTK 422
Query: 323 ASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEE--GFKALELGMKLITTKKVRSSTPW 380
++KEMS NG +P+ + NL F +E K++ + T
Sbjct: 423 CEAIVKEMSENGVEPDTFVLNSML------NLYGRLGQFTKME---KILAEMENGPCTAD 473
Query: 381 LETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAK--INDPNLLR 438
+ T +I I+ + G + E LF ELK+ N+ + + I AY + K + +
Sbjct: 474 ISTYNILINIYGKAGFLERIEELFVELKEKNFRPDVVTWTSRIGAYSRKKLYVKCLEVFE 533
Query: 439 RMILGGARPDAETYSLL 455
MI G PD T +L
Sbjct: 534 EMIDSGCAPDGGTAKVL 550
Score = 75.1 bits (183), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 76/340 (22%), Positives = 144/340 (42%), Gaps = 12/340 (3%)
Query: 42 NKRALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQGEKLFC------CIPKDYQNE 95
+ A++V + + R+R +P Y+ ++ K KL+C C P N
Sbjct: 245 TEEAIDVFQRMKRDRC-KPTTETYNLMINLYGKASKSYMSWKLYCEMRSHQCKP----NI 299
Query: 96 LLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQ 155
Y LV A +G+ + + E ++++ G V+N L+ S G I
Sbjct: 300 CTYTALVNAFAREGLCEKAEEIFEQLQEDGLEPDVYVYNALMESYSRAGYPYGAAEIFSL 359
Query: 156 MKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARL 215
M+ P ++++I++ V+ +MKR + P S+ +L +A++ AR
Sbjct: 360 MQHMGCEPDRASYNIMVDAYGRAGLHSDAEAVFEEMKRLGIAPTMKSHMLLLSAYSKARD 419
Query: 216 YTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRS-KSYVL 274
T E V+ + ++ + L+ ++ LYG L + +E+I A ++ P +Y +
Sbjct: 420 VTKCEAIVKEMSENGVEPDTFVLNSMLNLYGRLGQFTKMEKILAEMENGPCTADISTYNI 479
Query: 275 AIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNG 334
I +G+ + R EEL++E++ + S I Y + K + +EM +G
Sbjct: 480 LINIYGKAGFLERIEELFVELKEKNFRPDVVTWTSRIGAYSRKKLYVKCLEVFEEMIDSG 539
Query: 335 CKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKV 374
C P+ T + L C VE+ L K +T +
Sbjct: 540 CAPDGGTAKVLLSACSSEEQVEQVTSVLRTMHKGVTVSSL 579
>sp|Q8L844|PP413_ARATH Pentatricopeptide repeat-containing protein At5g42310,
mitochondrial OS=Arabidopsis thaliana GN=At5g42310 PE=2
SV=1
Length = 709
Score = 92.4 bits (228), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 89/419 (21%), Positives = 181/419 (43%), Gaps = 51/419 (12%)
Query: 53 IRERPYRPKELDYSYLLEFTIKNHGISQGEKLFCCIPKD--YQNELLYNNLVIACLDKGV 110
+R+ +P+ Y+ LL+ +K + E + + K +E Y+ L+ A ++ G
Sbjct: 330 LRQSGIKPRTRAYNALLKGYVKTGPLKDAESMVSEMEKRGVSPDEHTYSLLIDAYVNAGR 389
Query: 111 IKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHI 170
+ + +K+M + VF+RL+ G + +L++MK+ V P +++
Sbjct: 390 WESARIVLKEMEAGDVQPNSFVFSRLLAGFRDRGEWQKTFQVLKEMKSIGVKPDRQFYNV 449
Query: 171 LMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSM 230
++ + ++ M + M +EP+ V++ L H + VAE EA+E+
Sbjct: 450 VIDTFGKFNCLDHAMTTFDRMLSEGIEPDRVTWNTLIDCHCKHGRHIVAEEMFEAMERRG 509
Query: 231 TGNNWSTLDVLIILYGYLAKGKDLERIWATVQE---LPNVRSKSYVLAIEAFGRIAQVSR 287
+T +++I YG + D++R+ ++ LPNV + + + ++ +G+ + +
Sbjct: 510 CLPCATTYNIMINSYGDQERWDDMKRLLGKMKSQGILPNVVTHTTL--VDVYGKSGRFND 567
Query: 288 AEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLAL 347
A E EM+SV ++ YN++I+ Y + G ++A + M+ +G KP+ LAL
Sbjct: 568 AIECLEEMKSVGLKPSSTMYNALINAYAQRGLSEQAVNAFRVMTSDGLKPSL-----LAL 622
Query: 348 GCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEEL 407
S+I F E A + + +
Sbjct: 623 N-------------------------------------SLINAFGEDRRDAEAFAVLQYM 645
Query: 408 KKANYTKYTFVYNTLIKAYVKAKIND--PNLLRRMILGGARPDAETYSLLKLAEQFQKK 464
K+ Y TL+KA ++ P + MI+ G +PD + S+L+ A ++ K+
Sbjct: 646 KENGVKPDVVTYTTLMKALIRVDKFQKVPVVYEEMIMSGCKPDRKARSMLRSALRYMKQ 704
Score = 76.3 bits (186), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 81/406 (19%), Positives = 176/406 (43%), Gaps = 22/406 (5%)
Query: 53 IRERPYRPKELDYSYLLEFTIKNHGISQGE--KLFCCIPKDYQNEL---LYNNLVIACLD 107
+R+ Y+ ++YS +++ +++ I +L+ I +D + EL L N++++
Sbjct: 223 MRQDGYQSDFVNYSLVIQSLTRSNKIDSVMLLRLYKEIERD-KLELDVQLVNDIIMGFAK 281
Query: 108 KGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVST 167
G +L+ + + G S +I + GR + +++ + P
Sbjct: 282 SGDPSKALQLLGMAQATGLSAKTATLVSIISALADSGRTLEAEALFEELRQSGIKPRTRA 341
Query: 168 FHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALE 227
++ L+K ++ + S+M++ V P+E +Y +L A+ A + A ++ +E
Sbjct: 342 YNALLKGYVKTGPLKDAESMVSEMEKRGVSPDEHTYSLLIDAYVNAGRWESARIVLKEME 401
Query: 228 KSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSKS----YVLAIEAFGRIA 283
N L L G+ +G + ++ + ++E+ ++ K Y + I+ FG+
Sbjct: 402 AGDVQPNSFVFSRL--LAGFRDRG-EWQKTFQVLKEMKSIGVKPDRQFYNVVIDTFGKFN 458
Query: 284 QVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYR 343
+ A + M S +N++I +CK+G A + + M GC P A TY
Sbjct: 459 CLDHAMTTFDRMLSEGIEPDRVTWNTLIDCHCKHGRHIVAEEMFEAMERRGCLPCATTY- 517
Query: 344 HLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENL 403
++ + + + K +L+ K + P + T ++++++ + G +A
Sbjct: 518 NIMINSYGDQERWDDMK------RLLGKMKSQGILPNVVTHTTLVDVYGKSGRFNDAIEC 571
Query: 404 FEELKKANYTKYTFVYNTLIKAYVKAKINDP--NLLRRMILGGARP 447
EE+K + +YN LI AY + +++ N R M G +P
Sbjct: 572 LEEMKSVGLKPSSTMYNALINAYAQRGLSEQAVNAFRVMTSDGLKP 617
Score = 62.4 bits (150), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 63/221 (28%), Positives = 94/221 (42%), Gaps = 47/221 (21%)
Query: 272 YVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMS 331
Y + I A GR ++ A L S KQ YN++I +N I+KA L+ +M
Sbjct: 170 YSILIHALGRSEKLYEAFLL-----SQKQTLTPLTYNALIGACARNNDIEKALNLIAKMR 224
Query: 332 MNGCKPNAITYRHLALGCFKSNLVEE---------------------------GF----- 359
+G + + + Y + +SN ++ GF
Sbjct: 225 QDGYQSDFVNYSLVIQSLTRSNKIDSVMLLRLYKEIERDKLELDVQLVNDIIMGFAKSGD 284
Query: 360 --KALEL-GMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYT 416
KAL+L GM T +++T +SII A+ G AE LFEEL+++ T
Sbjct: 285 PSKALQLLGMAQATGLSAKTAT-----LVSIISALADSGRTLEAEALFEELRQSGIKPRT 339
Query: 417 FVYNTLIKAYVK-AKINDP-NLLRRMILGGARPDAETYSLL 455
YN L+K YVK + D +++ M G PD TYSLL
Sbjct: 340 RAYNALLKGYVKTGPLKDAESMVSEMEKRGVSPDEHTYSLL 380
Score = 42.7 bits (99), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 61/298 (20%), Positives = 125/298 (41%), Gaps = 20/298 (6%)
Query: 167 TFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEAL 226
T++ L+ A +++IE + + + M++ + + V+Y ++ ++ R + + L
Sbjct: 199 TYNALIGACARNNDIEKALNLIAKMRQDGYQSDFVNYSLVI--QSLTRSNKIDSVMLLRL 256
Query: 227 EKSMTGNNWSTLDVLI---ILYGYLAKG---KDLERIWATVQELPNVRSKSYVLAIEAFG 280
K + + LDV + I+ G+ G K L+ + + ++ + V I A
Sbjct: 257 YKEIERDKLE-LDVQLVNDIIMGFAKSGDPSKALQLLGMAQATGLSAKTATLVSIISALA 315
Query: 281 RIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAI 340
+ AE L+ E++ T YN+++ Y K G + A ++ EM G P+
Sbjct: 316 DSGRTLEAEALFEELRQSGIKPRTRAYNALLKGYVKTGPLKDAESMVSEMEKRGVSPDEH 375
Query: 341 TYRHLALGCFKSNLVEEG-FKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGN 399
TY L V G +++ + +K + V+ ++ L+ F ++G+
Sbjct: 376 TYSLLI-----DAYVNAGRWESARIVLKEMEAGDVQPNSFVFSRLLA---GFRDRGEWQK 427
Query: 400 AENLFEELKKANYTKYTFVYNTLIKAYVKAKINDPNL--LRRMILGGARPDAETYSLL 455
+ +E+K YN +I + K D + RM+ G PD T++ L
Sbjct: 428 TFQVLKEMKSIGVKPDRQFYNVVIDTFGKFNCLDHAMTTFDRMLSEGIEPDRVTWNTL 485
>sp|Q9FLD8|PP408_ARATH Pentatricopeptide repeat-containing protein At5g39980,
chloroplastic OS=Arabidopsis thaliana GN=At5g39980 PE=2
SV=1
Length = 678
Score = 90.5 bits (223), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 88/378 (23%), Positives = 174/378 (46%), Gaps = 28/378 (7%)
Query: 43 KRALEVMEWVIRERPYRPKELDYSYLL-------EFTIKNHGISQGEKLFCCIPKDYQNE 95
+R+L +++WV E Y P Y+ +L +F I HG+ + P Y
Sbjct: 136 QRSLALLDWVHEEAKYTPSVFAYNVVLRNVLRAKQFDIA-HGLFDEMRQRALAPDRYT-- 192
Query: 96 LLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQ 155
Y+ L+ + +G+ +L +++KM S ++++ LI L+ +I +
Sbjct: 193 --YSTLITSFGKEGMFDSALSWLQKMEQDRVSGDLVLYSNLIELSRRLCDYSKAISIFSR 250
Query: 156 MKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARL 215
+K + P + ++ ++ + + +M + V PN VSY L + +
Sbjct: 251 LKRSGITPDLVAYNSMINVYGKAKLFREARLLIKEMNEAGVLPNTVSYSTLLSVYVENHK 310
Query: 216 YTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQEL---PNVRSKSY 272
+ A + +++ + +T +++I +YG L K+ +R++ +++++ PNV S +
Sbjct: 311 FLEALSVFAEMKEVNCALDLTTCNIMIDVYGQLDMVKEADRLFWSLRKMDIEPNVVSYNT 370
Query: 273 VLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSM 332
+L + +G A L+ MQ + YN++I +Y K +KA+ L++EM
Sbjct: 371 ILRV--YGEAELFGEAIHLFRLMQRKDIEQNVVTYNTMIKIYGKTMEHEKATNLVQEMQS 428
Query: 333 NGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTL--SIIEI 390
G +PNAITY S ++ KA +L +K+RSS ++ L ++I
Sbjct: 429 RGIEPNAITY---------STIISIWGKAGKLDRAATLFQKLRSSGVEIDQVLYQTMIVA 479
Query: 391 FAEKGDVGNAENLFEELK 408
+ G +G+A+ L ELK
Sbjct: 480 YERVGLMGHAKRLLHELK 497
Score = 58.2 bits (139), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 67/326 (20%), Positives = 133/326 (40%), Gaps = 64/326 (19%)
Query: 160 KVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVA 219
K P V ++++++ + ++ +M++ + P+ +Y L T+ ++ A
Sbjct: 150 KYTPSVFAYNVVLRNVLRAKQFDIAHGLFDEMRQRALAPDRYTYSTLITSFGKEGMFDSA 209
Query: 220 ETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSKSYVLAIEAF 279
++++ +E+ + ++LY L +L R R Y AI F
Sbjct: 210 LSWLQKMEQDRVSGD-------LVLYSNLI---ELSR-----------RLCDYSKAISIF 248
Query: 280 GRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNA 339
R+ + +L YNS+I+VY K +A L+KEM+ G PN
Sbjct: 249 SRLKRSGITPDLV-------------AYNSMINVYGKAKLFREARLLIKEMNEAGVLPNT 295
Query: 340 ITYRHL-------------------------ALGCFKSNLVEEGFKALEL---GMKLITT 371
++Y L AL N++ + + L++ +L +
Sbjct: 296 VSYSTLLSVYVENHKFLEALSVFAEMKEVNCALDLTTCNIMIDVYGQLDMVKEADRLFWS 355
Query: 372 KKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKI 431
+ P + + +I+ ++ E G A +LF +++ + + YNT+IK Y K
Sbjct: 356 LRKMDIEPNVVSYNTILRVYGEAELFGEAIHLFRLMQRKDIEQNVVTYNTMIKIYGKTME 415
Query: 432 ND--PNLLRRMILGGARPDAETYSLL 455
++ NL++ M G P+A TYS +
Sbjct: 416 HEKATNLVQEMQSRGIEPNAITYSTI 441
Score = 39.3 bits (90), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 46/239 (19%), Positives = 101/239 (42%), Gaps = 12/239 (5%)
Query: 131 LVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSD 190
+ +N +I + + N++++M++ + P+ T+ ++ I ++ ++
Sbjct: 401 VTYNTMIKIYGKTMEHEKATNLVQEMQSRGIEPNAITYSTIISIWGKAGKLDRAATLFQK 460
Query: 191 MKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAK 250
++ S VE ++V Y + A+ L A+ + L+ +N + IL
Sbjct: 461 LRSSGVEIDQVLYQTMIVAYERVGLMGHAKRLLHELK---LPDNIPRETAITIL---AKA 514
Query: 251 GKDLERIWATVQELPNVRSKS---YVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQY 307
G+ E W Q + K + I + R + E++ +M++ +
Sbjct: 515 GRTEEATWVFRQAFESGEVKDISVFGCMINLYSRNQRYVNVIEVFEKMRTAGYFPDSNVI 574
Query: 308 NSVISVYCKNGFIDKASGLLKEMSMNGCK-PNAITYRHLALGCFKSN--LVEEGFKALE 363
V++ Y K +KA + +EM GC P+ + ++ L+L K + +VE F+ LE
Sbjct: 575 AMVLNAYGKQREFEKADTVYREMQEEGCVFPDEVHFQMLSLYSSKKDFEMVESLFQRLE 633
>sp|Q9C6S6|PPR67_ARATH Putative pentatricopeptide repeat-containing protein At1g31840
OS=Arabidopsis thaliana GN=At1g31840 PE=2 SV=2
Length = 840
Score = 88.2 bits (217), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 96/405 (23%), Positives = 177/405 (43%), Gaps = 20/405 (4%)
Query: 53 IRERPYRPKELDYSYLLEFTIKNHGISQGEKLF-CCIPKDYQNEL-LYNNLVIACLDKGV 110
I +R P + YS L++ K + G L+ I Y ++ +Y LV +G+
Sbjct: 417 ILKRGMEPSIVTYSSLIDGFCKCGNLRSGFALYEDMIKMGYPPDVVIYGVLVDGLSKQGL 476
Query: 111 IKLSLEYMKKMRVLGHSI--SYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTF 168
+ ++ + KM LG SI + +VFN LI R + R M + P V+TF
Sbjct: 477 MLHAMRFSVKM--LGQSIRLNVVVFNSLIDGWCRLNRFDEALKVFRLMGIYGIKPDVATF 534
Query: 169 HILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEK 228
+M++ + +E + ++ M + +EP+ ++YC L A T+ + +++
Sbjct: 535 TTVMRVSIMEGRLEEALFLFFRMFKMGLEPDALAYCTLIDAFCKHMKPTIGLQLFDLMQR 594
Query: 229 SMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQEL---PNVRSKSYVLAIEAFGRIAQV 285
+ + + +V+I L + +D + + + E P++ +Y I + + ++
Sbjct: 595 NKISADIAVCNVVIHLLFKCHRIEDASKFFNNLIEGKMEPDI--VTYNTMICGYCSLRRL 652
Query: 286 SRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHL 345
AE ++ ++ T +I V CKN +D A + M+ G KPNA+TY L
Sbjct: 653 DEAERIFELLKVTPFGPNTVTLTILIHVLCKNNDMDGAIRMFSIMAEKGSKPNAVTYGCL 712
Query: 346 ALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFE 405
KS +E FK E + + +P + + II+ ++G V A N+F
Sbjct: 713 MDWFSKSVDIEGSFKLFE-------EMQEKGISPSIVSYSIIIDGLCKRGRVDEATNIFH 765
Query: 406 ELKKANYTKYTFVYNTLIKAYVK-AKINDPNLL-RRMILGGARPD 448
+ A Y LI+ Y K ++ + LL M+ G +PD
Sbjct: 766 QAIDAKLLPDVVAYAILIRGYCKVGRLVEAALLYEHMLRNGVKPD 810
Score = 55.1 bits (131), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 50/229 (21%), Positives = 98/229 (42%), Gaps = 40/229 (17%)
Query: 156 MKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARL 215
M+ +K++ ++ ++++ + H IE K ++++ ++EP+ V+Y + + R
Sbjct: 592 MQRNKISADIAVCNVVIHLLFKCHRIEDASKFFNNLIEGKMEPDIVTYNTMICGYCSLRR 651
Query: 216 YTVAETYVEALEKSMTGNNWSTLDVLI----------------------------ILYG- 246
AE E L+ + G N TL +LI + YG
Sbjct: 652 LDEAERIFELLKVTPFGPNTVTLTILIHVLCKNNDMDGAIRMFSIMAEKGSKPNAVTYGC 711
Query: 247 ---YLAKGKDLERIWATVQEL------PNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQS 297
+ +K D+E + +E+ P++ SY + I+ + +V A ++ +
Sbjct: 712 LMDWFSKSVDIEGSFKLFEEMQEKGISPSI--VSYSIIIDGLCKRGRVDEATNIFHQAID 769
Query: 298 VKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLA 346
K L Y +I YCK G + +A+ L + M NG KP+ + R L+
Sbjct: 770 AKLLPDVVAYAILIRGYCKVGRLVEAALLYEHMLRNGVKPDDLLQRALS 818
Score = 54.3 bits (129), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 68/270 (25%), Positives = 113/270 (41%), Gaps = 25/270 (9%)
Query: 196 VEPNEVSYCILATAHAVARLYTVAETYVE----ALEKSMTGNNWSTLDVLIILYGYLAKG 251
V P + Y +L + R+ +A+ + + +E S + LD L G + K
Sbjct: 178 VIPQDSVYRMLNSLIGSDRVDLIADHFDKLCRGGIEPSGVSAHGFVLDALFC-KGEVTKA 236
Query: 252 KDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVI 311
D R+ + S + VL + +I SR L L+ + + ++I
Sbjct: 237 LDFHRLVMERGFRVGIVSCNKVLKGLSVDQIEVASRLLSLVLDCGPAPNVVT---FCTLI 293
Query: 312 SVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFK----ALELGMK 367
+ +CK G +D+A L K M G +P+ I Y L G FK+ ++ G K AL G+K
Sbjct: 294 NGFCKRGEMDRAFDLFKVMEQRGIEPDLIAYSTLIDGYFKAGMLGMGHKLFSQALHKGVK 353
Query: 368 LITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYV 427
L V SST I+++ + GD+ A +++ + + Y LIK
Sbjct: 354 LDVV--VFSST---------IDVYVKSGDLATASVVYKRMLCQGISPNVVTYTILIKGLC 402
Query: 428 K-AKINDPNLLRRMILG-GARPDAETYSLL 455
+ +I + + IL G P TYS L
Sbjct: 403 QDGRIYEAFGMYGQILKRGMEPSIVTYSSL 432
Score = 50.4 bits (119), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 36/122 (29%), Positives = 56/122 (45%), Gaps = 7/122 (5%)
Query: 307 YNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGM 366
++S I VY K+G + AS + K M G PN +TY L G + + E F GM
Sbjct: 359 FSSTIDVYVKSGDLATASVVYKRMLCQGISPNVVTYTILIKGLCQDGRIYEAF-----GM 413
Query: 367 KLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAY 426
K R P + T S+I+ F + G++ + L+E++ K Y +Y L+
Sbjct: 414 YGQILK--RGMEPSIVTYSSLIDGFCKCGNLRSGFALYEDMIKMGYPPDVVIYGVLVDGL 471
Query: 427 VK 428
K
Sbjct: 472 SK 473
Score = 42.7 bits (99), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 78/409 (19%), Positives = 152/409 (37%), Gaps = 62/409 (15%)
Query: 33 INRLRKLQLNKRALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQGEKLFCCIPKDY 92
IN K RA ++ + V+ +R P + YS L++ K + G KLF
Sbjct: 293 INGFCKRGEMDRAFDLFK-VMEQRGIEPDLIAYSTLIDGYFKAGMLGMGHKLFS------ 345
Query: 93 QNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNI 152
L KGV + +VF+ I + G T +
Sbjct: 346 -----------QALHKGV----------------KLDVVVFSSTIDVYVKSGDLATASVV 378
Query: 153 LRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHA- 211
++M ++P+V T+ IL+K D I +Y + + +EP+ V+Y L
Sbjct: 379 YKRMLCQGISPNVVTYTILIKGLCQDGRIYEAFGMYGQILKRGMEPSIVTYSSLIDGFCK 438
Query: 212 VARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKD-----LERIWATVQEL-P 265
L + Y + ++ + +++YG L G L + +V+ L
Sbjct: 439 CGNLRSGFALYEDMIKMGYPPD--------VVIYGVLVDGLSKQGLMLHAMRFSVKMLGQ 490
Query: 266 NVRSKSYVL--AIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKA 323
++R V I+ + R+ + A +++ M + +V+ V G +++A
Sbjct: 491 SIRLNVVVFNSLIDGWCRLNRFDEALKVFRLMGIYGIKPDVATFTTVMRVSIMEGRLEEA 550
Query: 324 SGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALE--LGMKLITTKKVRSSTPWL 381
L M G +P+A+ Y L++ K ++ +G++L + + +
Sbjct: 551 LFLFFRMFKMGLEPDALAY---------CTLIDAFCKHMKPTIGLQLFDLMQRNKISADI 601
Query: 382 ETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAK 430
+I + + + +A F L + YNT+I Y +
Sbjct: 602 AVCNVVIHLLFKCHRIEDASKFFNNLIEGKMEPDIVTYNTMICGYCSLR 650
Score = 42.0 bits (97), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 60/299 (20%), Positives = 116/299 (38%), Gaps = 35/299 (11%)
Query: 162 APHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVA-E 220
AP+V TF L+ ++ ++ M++ +EP+ ++Y L + A + + +
Sbjct: 283 APNVVTFCTLINGFCKRGEMDRAFDLFKVMEQRGIEPDLIAYSTLIDGYFKAGMLGMGHK 342
Query: 221 TYVEALEKSMTGNNW---STLDVLIILYGYLAKGKDLERIWATVQELPNVRSKSYVLAIE 277
+ +AL K + + ST+DV + G LA + + PNV +Y + I+
Sbjct: 343 LFSQALHKGVKLDVVVFSSTIDVY-VKSGDLATASVVYKRMLCQGISPNV--VTYTILIK 399
Query: 278 AFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKP 337
+ ++ A ++ ++ + Y+S+I +CK G + L ++M G P
Sbjct: 400 GLCQDGRIYEAFGMYGQILKRGMEPSIVTYSSLIDGFCKCGNLRSGFALYEDMIKMGYPP 459
Query: 338 NAITYRHLALGCFKSNLVEEG--FKALELG--------------------------MKLI 369
+ + Y L G K L+ F LG +K+
Sbjct: 460 DVVIYGVLVDGLSKQGLMLHAMRFSVKMLGQSIRLNVVVFNSLIDGWCRLNRFDEALKVF 519
Query: 370 TTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVK 428
+ P + T +++ + +G + A LF + K Y TLI A+ K
Sbjct: 520 RLMGIYGIKPDVATFTTVMRVSIMEGRLEEALFLFFRMFKMGLEPDALAYCTLIDAFCK 578
>sp|O04504|PPR27_ARATH Pentatricopeptide repeat-containing protein At1g09820
OS=Arabidopsis thaliana GN=At1g09820 PE=2 SV=1
Length = 606
Score = 87.4 bits (215), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 92/373 (24%), Positives = 177/373 (47%), Gaps = 21/373 (5%)
Query: 94 NELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLI---ILNSSPGRRKTIP 150
N +N ++ A G + + + M+ M+V G S + + +N LI G+
Sbjct: 222 NVFTFNVVINALCKTGKMNKARDVMEDMKVYGCSPNVVSYNTLIDGYCKLGGNGKMYKAD 281
Query: 151 NILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAH 210
+L++M + V+P+++TF+IL+ D N+ G MKV+ +M +V+PN +SY L
Sbjct: 282 AVLKEMVENDVSPNLTTFNILIDGFWKDDNLPGSMKVFKEMLDQDVKPNVISYNSLINGL 341
Query: 211 AVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQ---ELPNV 267
+ A + + + + N T + LI + K+ ++ +V+ +P
Sbjct: 342 CNGGKISEAISMRDKMVSAGVQPNLITYNALINGFCKNDMLKEALDMFGSVKGQGAVPTT 401
Query: 268 RSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLL 327
R Y + I+A+ ++ ++ L EM+ + YN +I+ C+NG I+ A L
Sbjct: 402 R--MYNMLIDAYCKLGKIDDGFALKEEMEREGIVPDVGTYNCLIAGLCRNGNIEAAKKLF 459
Query: 328 KEMSMNGCKPNAITYRHLALG-CFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLS 386
+++ G P+ +T+ L G C K E KA L +K ++ ++ P T
Sbjct: 460 DQLTSKGL-PDLVTFHILMEGYCRKG----ESRKAAML-LKEMSKMGLK---PRHLTYNI 510
Query: 387 IIEIFAEKGDVGNAENLFEELKKANYTKYTFV-YNTLIKAYV-KAKINDPN-LLRRMILG 443
+++ + ++G++ A N+ +++K + YN L++ Y K K+ D N LL M+
Sbjct: 511 VMKGYCKEGNLKAATNMRTQMEKERRLRMNVASYNVLLQGYSQKGKLEDANMLLNEMLEK 570
Query: 444 GARPDAETYSLLK 456
G P+ TY ++K
Sbjct: 571 GLVPNRITYEIVK 583
Score = 76.6 bits (187), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 92/397 (23%), Positives = 155/397 (39%), Gaps = 64/397 (16%)
Query: 76 HGISQGEKLFCCIPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNR 135
H IS + + C+ N ++ + LV+A + +L E K+ G+ +S L
Sbjct: 141 HAISMCDNV--CV-----NSIIADMLVLAYANNSRFELGFEAFKRSGYYGYKLSALSCKP 193
Query: 136 LIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSE 195
L+I R + + ++M K+ P+V TF++++ + V DMK
Sbjct: 194 LMIALLKENRSADVEYVYKEMIRRKIQPNVFTFNVVINALCKTGKMNKARDVMEDMKVYG 253
Query: 196 VEPNEVSYCILATAH----AVARLYTVAETYVEALEKSMTGNNWSTLDVLI--------- 242
PN VSY L + ++Y E +E ++ N +T ++LI
Sbjct: 254 CSPNVVSYNTLIDGYCKLGGNGKMYKADAVLKEMVENDVSP-NLTTFNILIDGFWKDDNL 312
Query: 243 ------------------------ILYGYLAKGKDLERI-------WATVQELPNVRSKS 271
++ G GK E I A VQ PN+ +
Sbjct: 313 PGSMKVFKEMLDQDVKPNVISYNSLINGLCNGGKISEAISMRDKMVSAGVQ--PNL--IT 368
Query: 272 YVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMS 331
Y I F + + A +++ ++ + T YN +I YCK G ID L +EM
Sbjct: 369 YNALINGFCKNDMLKEALDMFGSVKGQGAVPTTRMYNMLIDAYCKLGKIDDGFALKEEME 428
Query: 332 MNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIF 391
G P+ TY L G ++ +E K + +T+K + P L T ++E +
Sbjct: 429 REGIVPDVGTYNCLIAGLCRNGNIEAAKKLFD----QLTSKGL----PDLVTFHILMEGY 480
Query: 392 AEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVK 428
KG+ A L +E+ K YN ++K Y K
Sbjct: 481 CRKGESRKAAMLLKEMSKMGLKPRHLTYNIVMKGYCK 517
>sp|Q3ECK2|PPR92_ARATH Pentatricopeptide repeat-containing protein At1g62680,
mitochondrial OS=Arabidopsis thaliana GN=At1g62680 PE=2
SV=2
Length = 548
Score = 86.7 bits (213), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 99/453 (21%), Positives = 197/453 (43%), Gaps = 26/453 (5%)
Query: 15 QSWMREGFPVHRGEIFHSIN--RLRKLQLNKRALEVMEWVIRERPYRPKELDYSYLLEFT 72
+ W+R V G++ ++ RLR ++LN A+++ +++ RP+ P +D++ LL
Sbjct: 38 RCWVRASSSVSGGDLRERLSKTRLRDIKLND-AIDLFSDMVKSRPF-PSIVDFNRLLSAI 95
Query: 73 IK----NHGISQGEKLFCCIPKDYQNELLYNNLVIACLDKGV-IKLSLEYMKKMRVLGHS 127
+K + IS G+K+ +N+L N+VI C + L+L + KM LG+
Sbjct: 96 VKLKKYDVVISLGKKME---VLGIRNDLYTFNIVINCFCCCFQVSLALSILGKMLKLGYE 152
Query: 128 ISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKV 187
+ L+ R +++ +M P + ++ ++ +
Sbjct: 153 PDRVTIGSLVNGFCRRNRVSDAVSLVDKMVEIGYKPDIVAYNAIIDSLCKTKRVNDAFDF 212
Query: 188 YSDMKRSEVEPNEVSYCILATAHA-VARLYTVAETYVEALEKSMTGN--NWSTLDVLIIL 244
+ +++R + PN V+Y L +R A + ++K +T N +S L +
Sbjct: 213 FKEIERKGIRPNVVTYTALVNGLCNSSRWSDAARLLSDMIKKKITPNVITYSALLDAFVK 272
Query: 245 YGYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKAT 304
G + + K+L + P++ +Y I ++ A +++ M S L
Sbjct: 273 NGKVLEAKELFEEMVRMSIDPDI--VTYSSLINGLCLHDRIDEANQMFDLMVSKGCLADV 330
Query: 305 EQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALEL 364
YN++I+ +CK ++ L +EMS G N +TY L G F++ V+ KA E
Sbjct: 331 VSYNTLINGFCKAKRVEDGMKLFREMSQRGLVSNTVTYNTLIQGFFQAGDVD---KAQE- 386
Query: 365 GMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIK 424
+ +P + T ++ + G++ A +FE+++K Y T+I+
Sbjct: 387 ---FFSQMDFFGISPDIWTYNILLGGLCDNGELEKALVIFEDMQKREMDLDIVTYTTVIR 443
Query: 425 AYVK-AKINDP-NLLRRMILGGARPDAETYSLL 455
K K+ + +L + L G +PD TY+ +
Sbjct: 444 GMCKTGKVEEAWSLFCSLSLKGLKPDIVTYTTM 476
Score = 40.8 bits (94), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 71/357 (19%), Positives = 141/357 (39%), Gaps = 54/357 (15%)
Query: 98 YNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLI--ILNSSPGRRKTIPNILRQ 155
YN ++ + + + ++ K++ G + + + L+ + NSS R +L
Sbjct: 193 YNAIIDSLCKTKRVNDAFDFFKEIERKGIRPNVVTYTALVNGLCNSS--RWSDAARLLSD 250
Query: 156 MKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAV-AR 214
M K+ P+V T+ L+ + + +++ +M R ++P+ V+Y L + R
Sbjct: 251 MIKKKITPNVITYSALLDAFVKNGKVLEAKELFEEMVRMSIDPDIVTYSSLINGLCLHDR 310
Query: 215 LYTVAETYVEALEKSMTGN--NWSTLDVLIILYGYLAKGKDLERIWATVQELPN----VR 268
+ + + + K + +++TL + G+ K K +E +E+
Sbjct: 311 IDEANQMFDLMVSKGCLADVVSYNTL-----INGF-CKAKRVEDGMKLFREMSQRGLVSN 364
Query: 269 SKSYVLAIEAFGRIAQVSRAEELWLEMQSV-----------------------KQLKATE 305
+ +Y I+ F + V +A+E + +M K L E
Sbjct: 365 TVTYNTLIQGFFQAGDVDKAQEFFSQMDFFGISPDIWTYNILLGGLCDNGELEKALVIFE 424
Query: 306 Q------------YNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSN 353
Y +VI CK G +++A L +S+ G KP+ +TY + G
Sbjct: 425 DMQKREMDLDIVTYTTVIRGMCKTGKVEEAWSLFCSLSLKGLKPDIVTYTTMMSGLCTKG 484
Query: 354 LVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKA 410
L+ E +AL MK K + + TLS E+ + G A +L +++K
Sbjct: 485 LLHE-VEALYTKMKQEGLMKNDCTLSDGDITLS-AELIKKMLSCGYAPSLLKDIKSG 539
>sp|O80958|PP194_ARATH Pentatricopeptide repeat-containing protein At2g39230,
mitochondrial OS=Arabidopsis thaliana GN=LOJ PE=1 SV=1
Length = 867
Score = 85.5 bits (210), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 74/273 (27%), Positives = 125/273 (45%), Gaps = 19/273 (6%)
Query: 191 MKRSEVEPNEVSYCILATAHAVARLYTVAET-YVEALEKSMTGNNWSTLDVLIILYGYLA 249
M++ +EPN V Y + AH + +A + + E LEK + NN++ I++ G+
Sbjct: 475 MEQKGIEPNVVFYNNMMLAHCRMKNMDLARSIFSEMLEKGLEPNNFT---YSILIDGFF- 530
Query: 250 KGKDLERIWATVQEL--PNVRSKS--YVLAIEAFGRIAQVSRAEELWLEMQSVKQLK-AT 304
K KD + W + ++ N + Y I ++ Q S+A+E+ + K+ +
Sbjct: 531 KNKDEQNAWDVINQMNASNFEANEVIYNTIINGLCKVGQTSKAKEMLQNLIKEKRYSMSC 590
Query: 305 EQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALEL 364
YNS+I + K G D A +EMS NG PN +T+ L G KSN ++L
Sbjct: 591 TSYNSIIDGFVKVGDTDSAVETYREMSENGKSPNVVTFTSLINGFCKSN-------RMDL 643
Query: 365 GMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIK 424
+++ K L ++I+ F +K D+ A LF EL + VYN+LI
Sbjct: 644 ALEMTHEMKSMELKLDLPAYGALIDGFCKKNDMKTAYTLFSELPELGLMPNVSVYNSLIS 703
Query: 425 AYVKAKINDP--NLLRRMILGGARPDAETYSLL 455
+ D +L ++M+ G D TY+ +
Sbjct: 704 GFRNLGKMDAAIDLYKKMVNDGISCDLFTYTTM 736
Score = 48.5 bits (114), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/121 (23%), Positives = 55/121 (45%), Gaps = 7/121 (5%)
Query: 308 NSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMK 367
N + ++CK G +D A+ LK M G +PN + Y ++ L + K ++L
Sbjct: 453 NKIFLLFCKQGKVDAATSFLKMMEQKGIEPNVVFYNNMMLAHCR-------MKNMDLARS 505
Query: 368 LITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYV 427
+ + + P T +I+ F + D NA ++ ++ +N+ +YNT+I
Sbjct: 506 IFSEMLEKGLEPNNFTYSILIDGFFKNKDEQNAWDVINQMNASNFEANEVIYNTIINGLC 565
Query: 428 K 428
K
Sbjct: 566 K 566
Score = 45.4 bits (106), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 71/370 (19%), Positives = 144/370 (38%), Gaps = 48/370 (12%)
Query: 96 LLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQ 155
+ N + + +G + + ++K M G + + +N +++ + +I +
Sbjct: 450 FMCNKIFLLFCKQGKVDAATSFLKMMEQKGIEPNVVFYNNMMLAHCRMKNMDLARSIFSE 509
Query: 156 MKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARL 215
M + P+ T+ IL+ + + + V + M S E NEV Y +
Sbjct: 510 MLEKGLEPNNFTYSILIDGFFKNKDEQNAWDVINQMNASNFEANEVIYNTIINGLCKVGQ 569
Query: 216 YTVAETYVEALEK----SMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQEL------P 265
+ A+ ++ L K SM+ ++++ I+ G++ G D + T +E+ P
Sbjct: 570 TSKAKEMLQNLIKEKRYSMSCTSYNS-----IIDGFVKVG-DTDSAVETYREMSENGKSP 623
Query: 266 NVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASG 325
NV ++ I F + ++ A E+ EM+S++ Y ++I +CK + A
Sbjct: 624 NV--VTFTSLINGFCKSNRMDLALEMTHEMKSMELKLDLPAYGALIDGFCKKNDMKTAYT 681
Query: 326 LLKEMSMNGCKPNAITYRHLALGCFKS------------NLVEEGFKA------------ 361
L E+ G PN Y L G F++ +V +G
Sbjct: 682 LFSELPELGLMPNVSVYNSLISG-FRNLGKMDAAIDLYKKMVNDGISCDLFTYTTMIDGL 740
Query: 362 -----LELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYT 416
+ L L + P + ++ ++KG A + EE+KK + T
Sbjct: 741 LKDGNINLASDLYSELLDLGIVPDEILHMVLVNGLSKKGQFLKASKMLEEMKKKDVTPNV 800
Query: 417 FVYNTLIKAY 426
+Y+T+I +
Sbjct: 801 LLYSTVIAGH 810
Score = 38.5 bits (88), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 59/310 (19%), Positives = 125/310 (40%), Gaps = 4/310 (1%)
Query: 55 ERPYRPKELDYSYLLEFTIKNHGISQGEKLFCCI-PKDYQ-NELLYNNLVIACLDKGVIK 112
E+ P YS L++ KN + + +++ NE++YN ++ G
Sbjct: 512 EKGLEPNNFTYSILIDGFFKNKDEQNAWDVINQMNASNFEANEVIYNTIINGLCKVGQTS 571
Query: 113 LSLEYMKKM-RVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHIL 171
+ E ++ + + +S+S +N +I G + R+M + +P+V TF L
Sbjct: 572 KAKEMLQNLIKEKRYSMSCTSYNSIIDGFVKVGDTDSAVETYREMSENGKSPNVVTFTSL 631
Query: 172 MKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMT 231
+ + ++ +++ +MK E++ + +Y L A T L +
Sbjct: 632 INGFCKSNRMDLALEMTHEMKSMELKLDLPAYGALIDGFCKKNDMKTAYTLFSELPELGL 691
Query: 232 GNNWSTLDVLIILYGYLAK-GKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEE 290
N S + LI + L K ++ V + + +Y I+ + ++ A +
Sbjct: 692 MPNVSVYNSLISGFRNLGKMDAAIDLYKKMVNDGISCDLFTYTTMIDGLLKDGNINLASD 751
Query: 291 LWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCF 350
L+ E+ + + + +++ K G KAS +L+EM PN + Y + G
Sbjct: 752 LYSELLDLGIVPDEILHMVLVNGLSKKGQFLKASKMLEEMKKKDVTPNVLLYSTVIAGHH 811
Query: 351 KSNLVEEGFK 360
+ + E F+
Sbjct: 812 REGNLNEAFR 821
Score = 35.0 bits (79), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 40/164 (24%), Positives = 74/164 (45%), Gaps = 16/164 (9%)
Query: 272 YVLAIEAFGRIAQVSRAEELWLEMQSVKQLKAT-EQYNSVISVYCKNGFIDKASGLLKEM 330
+ LA++A + + A +L EM+ + A+ E Y SVI + K G +++A ++ EM
Sbjct: 277 FSLAVQAACKTPDLVMALDLLREMRGKLGVPASQETYTSVIVAFVKEGNMEEAVRVMDEM 336
Query: 331 SMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKL----ITTKKVRSSTPWLETTLS 386
G + I L G K N E KAL+L ++ + KV S
Sbjct: 337 VGFGIPMSVIAATSLVNGYCKGN---ELGKALDLFNRMEEEGLAPDKVMFSV-------- 385
Query: 387 IIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAK 430
++E F + ++ A + +K + + +T+I+ +KA+
Sbjct: 386 MVEWFCKNMEMEKAIEFYMRMKSVRIAPSSVLVHTMIQGCLKAE 429
Score = 34.3 bits (77), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 33/185 (17%), Positives = 73/185 (39%), Gaps = 16/185 (8%)
Query: 276 IEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGC 335
+ + + ++ +A +L+ M+ ++ ++ +CKN ++KA M
Sbjct: 352 VNGYCKGNELGKALDLFNRMEEEGLAPDKVMFSVMVEWFCKNMEMEKAIEFYMRMKSVRI 411
Query: 336 KPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTL---SIIEIFA 392
P+++ + GC K+ E + S W+ I +F
Sbjct: 412 APSSVLVHTMIQGCLKAESPEAALEIFN-----------DSFESWIAHGFMCNKIFLLFC 460
Query: 393 EKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKIND--PNLLRRMILGGARPDAE 450
++G V A + + +++ YN ++ A+ + K D ++ M+ G P+
Sbjct: 461 KQGKVDAATSFLKMMEQKGIEPNVVFYNNMMLAHCRMKNMDLARSIFSEMLEKGLEPNNF 520
Query: 451 TYSLL 455
TYS+L
Sbjct: 521 TYSIL 525
>sp|Q3EDF8|PPR28_ARATH Pentatricopeptide repeat-containing protein At1g09900
OS=Arabidopsis thaliana GN=At1g09900 PE=2 SV=1
Length = 598
Score = 85.1 bits (209), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 82/370 (22%), Positives = 162/370 (43%), Gaps = 28/370 (7%)
Query: 98 YNNLVIACLDKGVIKLSLEYMKKM---RVLGHSISYLVFNRLIILNSSPGRRKTIPNILR 154
YN ++ + D G +K ++E + +M I+Y + +S G +L
Sbjct: 207 YNTILRSLCDSGKLKQAMEVLDRMLQRDCYPDVITYTILIEATCRDSGVGHAM---KLLD 263
Query: 155 QMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVAR 214
+M+ P V T+++L+ + ++ +K +DM S +PN +++ I+ +
Sbjct: 264 EMRDRGCTPDVVTYNVLVNGICKEGRLDEAIKFLNDMPSSGCQPNVITHNIILRSMCSTG 323
Query: 215 LYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPN----VRSK 270
+ AE + + + + T ++LI +L + L R ++++P S
Sbjct: 324 RWMDAEKLLADMLRKGFSPSVVTFNILI---NFLCRKGLLGRAIDILEKMPQHGCQPNSL 380
Query: 271 SYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEM 330
SY + F + ++ RA E M S YN++++ CK+G ++ A +L ++
Sbjct: 381 SYNPLLHGFCKEKKMDRAIEYLERMVSRGCYPDIVTYNTMLTALCKDGKVEDAVEILNQL 440
Query: 331 SMNGCKPNAITYRHLALGCFKSNLVEEGF-KALELG--MKLITTKKVRSSTPWLETTLSI 387
S GC P ITY N V +G KA + G +KL+ + + P T S+
Sbjct: 441 SSKGCSPVLITY----------NTVIDGLAKAGKTGKAIKLLDEMRAKDLKPDTITYSSL 490
Query: 388 IEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKINDP--NLLRRMILGGA 445
+ + +G V A F E ++ +N+++ K++ D + L MI G
Sbjct: 491 VGGLSREGKVDEAIKFFHEFERMGIRPNAVTFNSIMLGLCKSRQTDRAIDFLVFMINRGC 550
Query: 446 RPDAETYSLL 455
+P+ +Y++L
Sbjct: 551 KPNETSYTIL 560
Score = 77.8 bits (190), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 85/373 (22%), Positives = 162/373 (43%), Gaps = 27/373 (7%)
Query: 96 LLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQ 155
+ YN ++ G I +L + +M V S + +N ++ G+ K +L +
Sbjct: 173 ITYNVMISGYCKAGEINNALSVLDRMSV---SPDVVTYNTILRSLCDSGKLKQAMEVLDR 229
Query: 156 MKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARL 215
M P V T+ IL++ D + MK+ +M+ P+ V+Y +L
Sbjct: 230 MLQRDCYPDVITYTILIEATCRDSGVGHAMKLLDEMRDRGCTPDVVTYNVLVNGICKEGR 289
Query: 216 YTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGK--DLERIWATVQE---LPNVRSK 270
A ++ + S N T + IIL + G+ D E++ A + P+V
Sbjct: 290 LDEAIKFLNDMPSSGCQPNVITHN--IILRSMCSTGRWMDAEKLLADMLRKGFSPSV--V 345
Query: 271 SYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEM 330
++ + I R + RA ++ +M + YN ++ +CK +D+A L+ M
Sbjct: 346 TFNILINFLCRKGLLGRAIDILEKMPQHGCQPNSLSYNPLLHGFCKEKKMDRAIEYLERM 405
Query: 331 SMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEI 390
GC P+ +TY + K VE+ A+E+ +L + + +P L T ++I+
Sbjct: 406 VSRGCYPDIVTYNTMLTALCKDGKVED---AVEILNQLSS----KGCSPVLITYNTVIDG 458
Query: 391 FAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVK-AKINDP----NLLRRMILGGA 445
A+ G G A L +E++ + T Y++L+ + K+++ + RM G
Sbjct: 459 LAKAGKTGKAIKLLDEMRAKDLKPDTITYSSLVGGLSREGKVDEAIKFFHEFERM---GI 515
Query: 446 RPDAETYSLLKLA 458
RP+A T++ + L
Sbjct: 516 RPNAVTFNSIMLG 528
Score = 58.9 bits (141), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 82/364 (22%), Positives = 144/364 (39%), Gaps = 50/364 (13%)
Query: 43 KRALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQGEKLF------CCIPKDYQNEL 96
K+A+EV++ +++ Y P + Y+ L+E T ++ G+ KL C P + +
Sbjct: 221 KQAMEVLDRMLQRDCY-PDVITYTILIEATCRDSGVGHAMKLLDEMRDRGCTP----DVV 275
Query: 97 LYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQM 156
YN LV +G + +++++ M G + + N ++ S GR +L M
Sbjct: 276 TYNVLVNGICKEGRLDEAIKFLNDMPSSGCQPNVITHNIILRSMCSTGRWMDAEKLLADM 335
Query: 157 KADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLY 216
+P V TF+IL+ + + + M + +PN +SY L +
Sbjct: 336 LRKGFSPSVVTFNILINFLCRKGLLGRAIDILEKMPQHGCQPNSLSYNPLLHGFCKEKKM 395
Query: 217 TVAETYVEALEKS------MTGNNWSTL--------DVLIILYGYLAKG----------- 251
A Y+E + +T N T D + IL +KG
Sbjct: 396 DRAIEYLERMVSRGCYPDIVTYNTMLTALCKDGKVEDAVEILNQLSSKGCSPVLITYNTV 455
Query: 252 -KDLERIWAT---VQELPNVRSK-------SYVLAIEAFGRIAQVSRAEELWLEMQSVKQ 300
L + T ++ L +R+K +Y + R +V A + + E + +
Sbjct: 456 IDGLAKAGKTGKAIKLLDEMRAKDLKPDTITYSSLVGGLSREGKVDEAIKFFHEFERMGI 515
Query: 301 LKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFK 360
+NS++ CK+ D+A L M GCKPN +Y L G + +E
Sbjct: 516 RPNAVTFNSIMLGLCKSRQTDRAIDFLVFMINRGCKPNETSYTILIEGLAYEGMAKE--- 572
Query: 361 ALEL 364
ALEL
Sbjct: 573 ALEL 576
Score = 55.5 bits (132), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 44/182 (24%), Positives = 83/182 (45%), Gaps = 12/182 (6%)
Query: 276 IEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGC 335
I F R+ + +A ++ ++ + YN +IS YCK G I+ A +L MS++
Sbjct: 144 IRGFCRLGKTRKAAKILEILEGSGAVPDVITYNVMISGYCKAGEINNALSVLDRMSVS-- 201
Query: 336 KPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKG 395
P+ +TY + +L + G L+ M+++ R P + T +IE
Sbjct: 202 -PDVVTYNTIL-----RSLCDSG--KLKQAMEVLDRMLQRDCYPDVITYTILIEATCRDS 253
Query: 396 DVGNAENLFEELKKANYTKYTFVYNTLIKAYVK-AKINDP-NLLRRMILGGARPDAETYS 453
VG+A L +E++ T YN L+ K ++++ L M G +P+ T++
Sbjct: 254 GVGHAMKLLDEMRDRGCTPDVVTYNVLVNGICKEGRLDEAIKFLNDMPSSGCQPNVITHN 313
Query: 454 LL 455
++
Sbjct: 314 II 315
Score = 33.5 bits (75), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 44/103 (42%), Gaps = 12/103 (11%)
Query: 355 VEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTK 414
+EEGFK LE + P + ++I F G A + E L+ +
Sbjct: 118 LEEGFKFLE-------NMVYHGNVPDIIPCTTLIRGFCRLGKTRKAAKILEILEGSGAVP 170
Query: 415 YTFVYNTLIKAYVKA-KINDP-NLLRRMILGGARPDAETYSLL 455
YN +I Y KA +IN+ ++L RM PD TY+ +
Sbjct: 171 DVITYNVMISGYCKAGEINNALSVLDRM---SVSPDVVTYNTI 210
>sp|Q9SV96|PP358_ARATH Pentatricopeptide repeat-containing protein At4g39620,
chloroplastic OS=Arabidopsis thaliana GN=EMB2453 PE=2
SV=1
Length = 563
Score = 85.1 bits (209), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 84/371 (22%), Positives = 162/371 (43%), Gaps = 23/371 (6%)
Query: 44 RALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQGEKLFC------CIPKDYQNELL 97
+ LEV W+ ++R Y P YS L+ K LF C P + +
Sbjct: 115 QCLEVFRWMQKQRWYIPDNGVYSKLISVMGKKGQTRMAMWLFSEMKNSGCRP----DASV 170
Query: 98 YNNLVIACLDKGVIKLSLE----YMKKMRVLGHSISYLV-FNRLIILNSSPGRRKTIPNI 152
YN L+ A L +LE Y+ KM+ + +V +N L+ + G+ + +
Sbjct: 171 YNALITAHLHTRDKAKALEKVRGYLDKMKGIERCQPNVVTYNILLRAFAQSGKVDQVNAL 230
Query: 153 LRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAV 212
+ + V+P V TF+ +M + I+ + V + M+ +E +P+ +++ +L ++
Sbjct: 231 FKDLDMSPVSPDVYTFNGVMDAYGKNGMIKEMEAVLTRMRSNECKPDIITFNVLIDSYGK 290
Query: 213 ARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRS-KS 271
+ + E ++L +S T + +II YG E ++ + ++ + S +
Sbjct: 291 KQEFEKMEQTFKSLMRSKEKPTLPTFNSMIINYGKARMIDKAEWVFKKMNDMNYIPSFIT 350
Query: 272 YVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMS 331
Y I +G VSRA E++ E+ ++ N+++ VYC+NG +A L S
Sbjct: 351 YECMIMMYGYCGSVSRAREIFEEVGESDRVLKASTLNAMLEVYCRNGLYIEADKLFHNAS 410
Query: 332 MNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIF 391
P+A TY+ L K+++ E+ +++ MK + + P L +E+F
Sbjct: 411 AFRVHPDASTYKFLYKAYTKADMKEQ----VQILMKKMEKDGI---VPNKRFFLEALEVF 463
Query: 392 AEKGDVGNAEN 402
+ +EN
Sbjct: 464 GSRLPGSGSEN 474
Score = 53.9 bits (128), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 69/331 (20%), Positives = 142/331 (42%), Gaps = 19/331 (5%)
Query: 132 VFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHN----IEGLMKV 187
V+++LI + G+ + + +MK P S ++ L+ + + +E +
Sbjct: 135 VYSKLISVMGKKGQTRMAMWLFSEMKNSGCRPDASVYNALITAHLHTRDKAKALEKVRGY 194
Query: 188 YSDMKRSE-VEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYG 246
MK E +PN V+Y IL A A + + L+ S + T + ++ YG
Sbjct: 195 LDKMKGIERCQPNVVTYNILLRAFAQSGKVDQVNALFKDLDMSPVSPDVYTFNGVMDAYG 254
Query: 247 YLAKGKDLERIWATVQE---LPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKA 303
K++E + ++ P++ ++ + I+++G+ + + E+ + + K+
Sbjct: 255 KNGMIKEMEAVLTRMRSNECKPDI--ITFNVLIDSYGKKQEFEKMEQTFKSLMRSKEKPT 312
Query: 304 TEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALE 363
+NS+I Y K IDKA + K+M+ P+ ITY + + V +A E
Sbjct: 313 LPTFNSMIINYGKARMIDKAEWVFKKMNDMNYIPSFITYECMIMMYGYCGSVS---RARE 369
Query: 364 LGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLI 423
+ ++ + +V ++ T +++E++ G A+ LF Y L
Sbjct: 370 IFEEVGESDRVLKAS----TLNAMLEVYCRNGLYIEADKLFHNASAFRVHPDASTYKFLY 425
Query: 424 KAYVKAKINDPN--LLRRMILGGARPDAETY 452
KAY KA + + L+++M G P+ +
Sbjct: 426 KAYTKADMKEQVQILMKKMEKDGIVPNKRFF 456
Score = 50.1 bits (118), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 50/193 (25%), Positives = 84/193 (43%), Gaps = 7/193 (3%)
Query: 267 VRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVK-QLKATEQYNSVISVYCKNGFIDKASG 325
VR L E G+ + + E++ MQ + + Y+ +ISV K G A
Sbjct: 95 VRCDHCFLLFEELGKSDKWLQCLEVFRWMQKQRWYIPDNGVYSKLISVMGKKGQTRMAMW 154
Query: 326 LLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALE-LGMKLITTKKVRSSTPWLETT 384
L EM +GC+P+A Y L + + KALE + L K + P + T
Sbjct: 155 LFSEMKNSGCRPDASVYNALITAHLHT---RDKAKALEKVRGYLDKMKGIERCQPNVVTY 211
Query: 385 LSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKI--NDPNLLRRMIL 442
++ FA+ G V LF++L + + + +N ++ AY K + +L RM
Sbjct: 212 NILLRAFAQSGKVDQVNALFKDLDMSPVSPDVYTFNGVMDAYGKNGMIKEMEAVLTRMRS 271
Query: 443 GGARPDAETYSLL 455
+PD T+++L
Sbjct: 272 NECKPDIITFNVL 284
>sp|Q9FIT7|PP442_ARATH Pentatricopeptide repeat-containing protein At5g61990,
mitochondrial OS=Arabidopsis thaliana GN=At5g61990 PE=2
SV=1
Length = 974
Score = 84.7 bits (208), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 91/381 (23%), Positives = 164/381 (43%), Gaps = 20/381 (5%)
Query: 60 PKELDYSYLLEFTIKNHGISQGEKLFCCIPKDYQNELL----YNNLVIACLDKGVIKLSL 115
P+ Y+ L+E + + QG +L + K +N ++ Y +V G + +
Sbjct: 380 PQAQAYASLIEGYCREKNVRQGYELLVEMKK--RNIVISPYTYGTVVKGMCSSGDLDGAY 437
Query: 116 EYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIE 175
+K+M G + +++ LI R +L++MK +AP + ++ L+
Sbjct: 438 NIVKEMIASGCRPNVVIYTTLIKTFLQNSRFGDAMRVLKEMKEQGIAPDIFCYNSLIIGL 497
Query: 176 ANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNW 235
+ ++ +M + ++PN +Y + + A + A+ YV+ + + N
Sbjct: 498 SKAKRMDEARSFLVEMVENGLKPNAFTYGAFISGYIEASEFASADKYVKEMRECGVLPNK 557
Query: 236 STLDVLIILYGYLAKGKDLERIWA---TVQELPNVRSKSYVLAIEAFGRIAQVSRAEELW 292
LI Y KGK +E A V + +K+Y + + + +V AEE++
Sbjct: 558 VLCTGLI--NEYCKKGKVIEACSAYRSMVDQGILGDAKTYTVLMNGLFKNDKVDDAEEIF 615
Query: 293 LEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKS 352
EM+ Y +I+ + K G + KAS + EM G PN I Y L G +S
Sbjct: 616 REMRGKGIAPDVFSYGVLINGFSKLGNMQKASSIFDEMVEEGLTPNVIIYNMLLGGFCRS 675
Query: 353 NLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANY 412
+E KA E L+ V+ P T +II+ + + GD+ A LF+E+K
Sbjct: 676 GEIE---KAKE----LLDEMSVKGLHPNAVTYCTIIDGYCKSGDLAEAFRLFDEMKLKGL 728
Query: 413 TKYTFVYNTLIKAYVKAKIND 433
+FVY TL+ ++ND
Sbjct: 729 VPDSFVYTTLVDGC--CRLND 747
Score = 69.7 bits (169), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 86/376 (22%), Positives = 160/376 (42%), Gaps = 29/376 (7%)
Query: 94 NELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNIL 153
N ++Y L+ L ++ +K+M+ G + +N LII S R + L
Sbjct: 451 NVVIYTTLIKTFLQNSRFGDAMRVLKEMKEQGIAPDIFCYNSLIIGLSKAKRMDEARSFL 510
Query: 154 RQMKADKVAPHVSTFHILMK--IEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHA 211
+M + + P+ T+ + IEA++ K +M+ V PN+V L +
Sbjct: 511 VEMVENGLKPNAFTYGAFISGYIEASE--FASADKYVKEMRECGVLPNKVLCTGLINEYC 568
Query: 212 V-ARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGK--DLERIWATVQE---LP 265
++ Y +++ + G+ + +++ G K D E I+ ++ P
Sbjct: 569 KKGKVIEACSAYRSMVDQGILGDAKT---YTVLMNGLFKNDKVDDAEEIFREMRGKGIAP 625
Query: 266 NVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASG 325
+V S Y + I F ++ + +A ++ EM YN ++ +C++G I+KA
Sbjct: 626 DVFS--YGVLINGFSKLGNMQKASSIFDEMVEEGLTPNVIIYNMLLGGFCRSGEIEKAKE 683
Query: 326 LLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTL 385
LL EMS+ G PNA+TY + G KS + E F +L K++ P
Sbjct: 684 LLDEMSVKGLHPNAVTYCTIIDGYCKSGDLAEAF-------RLFDEMKLKGLVPDSFVYT 736
Query: 386 SIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKIND--PNLLRRMILG 443
++++ DV A +F KK + T +N LI K + +L R++ G
Sbjct: 737 TLVDGCCRLNDVERAITIFGTNKKGCASS-TAPFNALINWVFKFGKTELKTEVLNRLMDG 795
Query: 444 G----ARPDAETYSLL 455
+P+ TY+++
Sbjct: 796 SFDRFGKPNDVTYNIM 811
Score = 49.7 bits (117), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 58/225 (25%), Positives = 96/225 (42%), Gaps = 16/225 (7%)
Query: 237 TLDVLIILYGYLAKGKDLERIWATVQELPNV----RSKSYVLAIEAFGRIAQVSRAEELW 292
T DVLI L K K LE + + E+ ++ + +Y L I+ + A+ L
Sbjct: 279 TYDVLI---DGLCKIKRLEDAKSLLVEMDSLGVSLDNHTYSLLIDGLLKGRNADAAKGLV 335
Query: 293 LEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKS 352
EM S Y+ I V K G ++KA L M +G P A Y L G +
Sbjct: 336 HEMVSHGINIKPYMYDCCICVMSKEGVMEKAKALFDGMIASGLIPQAQAYASLIEGYCRE 395
Query: 353 NLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANY 412
V +G+ +L+ K R+ T ++++ GD+ A N+ +E+ +
Sbjct: 396 KNVRQGY-------ELLVEMKKRNIVISPYTYGTVVKGMCSSGDLDGAYNIVKEMIASGC 448
Query: 413 TKYTFVYNTLIKAYVK-AKINDP-NLLRRMILGGARPDAETYSLL 455
+Y TLIK +++ ++ D +L+ M G PD Y+ L
Sbjct: 449 RPNVVIYTTLIKTFLQNSRFGDAMRVLKEMKEQGIAPDIFCYNSL 493
Score = 40.4 bits (93), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 67/339 (19%), Positives = 138/339 (40%), Gaps = 47/339 (13%)
Query: 116 EYMKKMRVLGHSISYLVFNRLIILN--SSPGRRKTIPNILRQMKADKVAPHVSTFHILMK 173
E ++MR G I+ VF+ +++N S G + +I +M + + P+V +++L+
Sbjct: 613 EIFREMR--GKGIAPDVFSYGVLINGFSKLGNMQKASSIFDEMVEEGLTPNVIIYNMLLG 670
Query: 174 IEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVA-------RLYT-------VA 219
IE ++ +M + PN V+YC + + + RL+ V
Sbjct: 671 GFCRSGEIEKAKELLDEMSVKGLHPNAVTYCTIIDGYCKSGDLAEAFRLFDEMKLKGLVP 730
Query: 220 ETYV-----------EALEKSMT--GNN----------WSTLDVLIILYGYLA-KGKDLE 255
+++V +E+++T G N ++ L + +G K + L
Sbjct: 731 DSFVYTTLVDGCCRLNDVERAITIFGTNKKGCASSTAPFNALINWVFKFGKTELKTEVLN 790
Query: 256 RIW-ATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVY 314
R+ + +Y + I+ + + A+EL+ +MQ+ + Y S+++ Y
Sbjct: 791 RLMDGSFDRFGKPNDVTYNIMIDYLCKEGNLEAAKELFHQMQNANLMPTVITYTSLLNGY 850
Query: 315 CKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKV 374
K G + + E G +P+ I Y + K + KAL L ++ V
Sbjct: 851 DKMGRRAEMFPVFDEAIAAGIEPDHIMYSVIINAFLKEGMTT---KALVLVDQMFAKNAV 907
Query: 375 RSSTPW-LETTLSIIEIFAEKGDVGNAENLFEELKKANY 412
+ T +++ FA+ G++ AE + E + + Y
Sbjct: 908 DDGCKLSISTCRALLSGFAKVGEMEVAEKVMENMVRLQY 946
>sp|Q3E911|PP400_ARATH Pentatricopeptide repeat-containing protein At5g27460
OS=Arabidopsis thaliana GN=At5g27460 PE=2 SV=1
Length = 491
Score = 83.2 bits (204), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 102/467 (21%), Positives = 188/467 (40%), Gaps = 42/467 (8%)
Query: 5 PRGEPVGSAFQSWMREGFPVHRGEIFHSINRLRKLQLNKRALEVMEWVIRERPYRPKELD 64
PR V S Q + G V E+ RL + AL++MEW+ ++ D
Sbjct: 50 PR-RSVTSLLQERIDSGHAVSLSELRLISKRLIRSNRYDLALQMMEWMENQKDIEFSVYD 108
Query: 65 YSYLLEFTIKNHGISQGEKLFCCIPKDYQNELLYNN------------LVIACLDKGVIK 112
+ L+ IK HG+ QGE+ F +LL+++ L+ A + ++K
Sbjct: 109 IALRLDLIIKTHGLKQGEEYF--------EKLLHSSVSMRVAKSAYLPLLRAYVKNKMVK 160
Query: 113 LSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILM 172
+ M+K+ LG ++ FN ++ L + G+ + + ++ MK +K+ +V ++++ M
Sbjct: 161 EAEALMEKLNGLGFLVTPHPFNEMMKLYEASGQYEKVVMVVSMMKGNKIPRNVLSYNLWM 220
Query: 173 KIEANDHNIEGLMKVYSDM-KRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMT 231
+ + VY +M VE S C LA + + A +E EK +
Sbjct: 221 NACCEVSGVAAVETVYKEMVGDKSVEVGWSSLCTLANVYIKSGFDEKARLVLEDAEKMLN 280
Query: 232 GNNWSTLDVLIILYGYLAKGKDLERIWATVQELPN-VRSKSYVLAIEAFGRIAQVSRAEE 290
+N LI LY L + + R+W + + + +Y+ + + + + AE
Sbjct: 281 RSNRLGYFFLITLYASLGNKEGVVRLWEVSKSVCGRISCVNYICVLSSLVKTGDLEEAER 340
Query: 291 LWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCF 350
++ E ++ N ++ Y +NG I KA L + G PN T+ L G
Sbjct: 341 VFSEWEAQCFNYDVRVSNVLLGAYVRNGEIRKAESLHGCVLERGGTPNYKTWEILMEGWV 400
Query: 351 KSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKA 410
K +E+ A+ L+ R P ++I E F ++ + A +L +
Sbjct: 401 KCENMEKAIDAMHQVFVLMRRCHWR---PSHNIVMAIAEYFEKEEKIEEATAYVRDLHRL 457
Query: 411 NYTKYTFVYNTLIKAYVKAKINDPNLLRRMILGGARPDAETYSLLKL 457
Y L++ + AK RP + Y ++KL
Sbjct: 458 GLASLPL-YRLLLRMHEHAK---------------RPAYDIYEMMKL 488
>sp|Q9FMF6|PP444_ARATH Pentatricopeptide repeat-containing protein At5g64320,
mitochondrial OS=Arabidopsis thaliana GN=At5g64320 PE=2
SV=1
Length = 730
Score = 82.8 bits (203), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 99/436 (22%), Positives = 174/436 (39%), Gaps = 77/436 (17%)
Query: 56 RPYRPKELDYSYLLEFTIKNHGISQGEKLFCCIPK-------------------DYQNEL 96
R + P ++ Y YL+ K + + LF IPK D +
Sbjct: 316 RGFAPDDITYGYLMNGLCKIGRVDAAKDLFYRIPKPEIVIFNTLIHGFVTHGRLDDAKAV 375
Query: 97 L---------------YNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNS 141
L YN+L+ +G++ L+LE + MR G + + L+
Sbjct: 376 LSDMVTSYGIVPDVCTYNSLIYGYWKEGLVGLALEVLHDMRNKGCKPNVYSYTILVDGFC 435
Query: 142 SPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEV 201
G+ N+L +M AD + P+ F+ L+ +H I ++++ +M R +P+
Sbjct: 436 KLGKIDEAYNVLNEMSADGLKPNTVGFNCLISAFCKEHRIPEAVEIFREMPRKGCKPDVY 495
Query: 202 SYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATV 261
++ L + V+ ++ ++ W D +I G +A
Sbjct: 496 TFNSLISGLC----------EVDEIKHAL----WLLRD--MISEGVVAN----------- 528
Query: 262 QELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFID 321
+ +Y I AF R ++ A +L EM YNS+I C+ G +D
Sbjct: 529 -------TVTYNTLINAFLRRGEIKEARKLVNEMVFQGSPLDEITYNSLIKGLCRAGEVD 581
Query: 322 KASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWL 381
KA L ++M +G P+ I+ L G +S +VEE A+E +++ +R STP +
Sbjct: 582 KARSLFEKMLRDGHAPSNISCNILINGLCRSGMVEE---AVEFQKEMV----LRGSTPDI 634
Query: 382 ETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKI--NDPNLLRR 439
T S+I G + + +F +L+ T +NTL+ K + LL
Sbjct: 635 VTFNSLINGLCRAGRIEDGLTMFRKLQAEGIPPDTVTFNTLMSWLCKGGFVYDACLLLDE 694
Query: 440 MILGGARPDAETYSLL 455
I G P+ T+S+L
Sbjct: 695 GIEDGFVPNHRTWSIL 710
Score = 71.6 bits (174), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 101/459 (22%), Positives = 187/459 (40%), Gaps = 64/459 (13%)
Query: 30 FHSIN-----RLRKLQLN-KRALEVMEWVIRERPYRPKELDYSYLL-------EF----- 71
FH I +L +L LN ++E+ W + YR Y L+ EF
Sbjct: 73 FHKITPFQLYKLLELPLNVSTSMELFSWTGSQNGYRHSFDVYQVLIGKLGANGEFKTIDR 132
Query: 72 ---TIKNHGISQGEKLFCCIPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMR-VLGHS 127
+K+ GI E LF I +DY G + M +MR V
Sbjct: 133 LLIQMKDEGIVFKESLFISIMRDYDK-------------AGFPGQTTRLMLEMRNVYSCE 179
Query: 128 ISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKV 187
++ +N ++ + S K N+ M + K+ P + TF ++MK + I+ + +
Sbjct: 180 PTFKSYNVVLEILVSGNCHKVAANVFYDMLSRKIPPTLFTFGVVMKAFCAVNEIDSALSL 239
Query: 188 YSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTG--NNWSTLDVLIILY 245
DM + PN V Y L H++++ V E E + G + T + +I+
Sbjct: 240 LRDMTKHGCVPNSVIYQTL--IHSLSKCNRVNEALQLLEEMFLMGCVPDAETFNDVIL-- 295
Query: 246 GYLAKGKDLERIWATVQEL------PNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVK 299
L K + V + P+ + Y++ +I +V A++L+ + +
Sbjct: 296 -GLCKFDRINEAAKMVNRMLIRGFAPDDITYGYLM--NGLCKIGRVDAAKDLFYRIPKPE 352
Query: 300 QLKATEQYNSVISVYCKNGFIDKASGLLKEMSMN-GCKPNAITYRHLALGCFKSNLVEEG 358
+ +N++I + +G +D A +L +M + G P+ TY L G +K LV
Sbjct: 353 IV----IFNTLIHGFVTHGRLDDAKAVLSDMVTSYGIVPDVCTYNSLIYGYWKEGLV--- 405
Query: 359 FKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFV 418
L ++++ + + P + + +++ F + G + A N+ E+ T
Sbjct: 406 ----GLALEVLHDMRNKGCKPNVYSYTILVDGFCKLGKIDEAYNVLNEMSADGLKPNTVG 461
Query: 419 YNTLIKAYVKA-KINDP-NLLRRMILGGARPDAETYSLL 455
+N LI A+ K +I + + R M G +PD T++ L
Sbjct: 462 FNCLISAFCKEHRIPEAVEIFREMPRKGCKPDVYTFNSL 500
Score = 53.9 bits (128), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 75/357 (21%), Positives = 147/357 (41%), Gaps = 28/357 (7%)
Query: 111 IKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHI 170
I +L ++ M G + +++ LI S R +L +M P TF+
Sbjct: 233 IDSALSLLRDMTKHGCVPNSVIYQTLIHSLSKCNRVNEALQLLEEMFLMGCVPDAETFND 292
Query: 171 LMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHA-VARLYTVAETYVEALEKS 229
++ I K+ + M P++++Y L + R+ + + +
Sbjct: 293 VILGLCKFDRINEAAKMVNRMLIRGFAPDDITYGYLMNGLCKIGRVDAAKDLFYRIPKPE 352
Query: 230 MTGNNWSTLDVLIILYGYLAKGKDLERIWATVQEL-------PNVRSKSYVLAIEAFGRI 282
+ N +++G++ G+ L+ A + ++ P+V +Y I + +
Sbjct: 353 IVIFN-------TLIHGFVTHGR-LDDAKAVLSDMVTSYGIVPDV--CTYNSLIYGYWKE 402
Query: 283 AQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITY 342
V A E+ +M++ Y ++ +CK G ID+A +L EMS +G KPN + +
Sbjct: 403 GLVGLALEVLHDMRNKGCKPNVYSYTILVDGFCKLGKIDEAYNVLNEMSADGLKPNTVGF 462
Query: 343 RHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAEN 402
L K + + E +++ + P + T S+I E ++ +A
Sbjct: 463 NCLISAFCKEHRIPE-------AVEIFREMPRKGCKPDVYTFNSLISGLCEVDEIKHALW 515
Query: 403 LFEELKKANYTKYTFVYNTLIKAYV-KAKINDP-NLLRRMILGGARPDAETY-SLLK 456
L ++ T YNTLI A++ + +I + L+ M+ G+ D TY SL+K
Sbjct: 516 LLRDMISEGVVANTVTYNTLINAFLRRGEIKEARKLVNEMVFQGSPLDEITYNSLIK 572
Score = 39.3 bits (90), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 64/308 (20%), Positives = 125/308 (40%), Gaps = 12/308 (3%)
Query: 45 ALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQGEKLFCCIPKD--YQNELLYNNLV 102
ALEV+ +R + +P Y+ L++ K I + + + D N + +N L+
Sbjct: 408 ALEVLH-DMRNKGCKPNVYSYTILVDGFCKLGKIDEAYNVLNEMSADGLKPNTVGFNCLI 466
Query: 103 IACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVA 162
A + I ++E ++M G FN LI K +LR M ++ V
Sbjct: 467 SAFCKEHRIPEAVEIFREMPRKGCKPDVYTFNSLISGLCEVDEIKHALWLLRDMISEGVV 526
Query: 163 PHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETY 222
+ T++ L+ I+ K+ ++M +E++Y L A A +
Sbjct: 527 ANTVTYNTLINAFLRRGEIKEARKLVNEMVFQGSPLDEITYNSLIKGLCRAGEVDKARSL 586
Query: 223 VEALEKSMTGNNWSTLDVLIILYGYLAKGK-----DLERIWATVQELPNVRSKSYVLAIE 277
E + + G+ S + I++ G G + ++ P++ + + + I
Sbjct: 587 FEKMLRD--GHAPSNISCNILINGLCRSGMVEEAVEFQKEMVLRGSTPDIVTFNSL--IN 642
Query: 278 AFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKP 337
R ++ ++ ++Q+ T +N+++S CK GF+ A LL E +G P
Sbjct: 643 GLCRAGRIEDGLTMFRKLQAEGIPPDTVTFNTLMSWLCKGGFVYDACLLLDEGIEDGFVP 702
Query: 338 NAITYRHL 345
N T+ L
Sbjct: 703 NHRTWSIL 710
Score = 38.9 bits (89), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 32/139 (23%), Positives = 67/139 (48%), Gaps = 4/139 (2%)
Query: 36 LRKLQLNKRALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQGEKLFCCIPKDYQ-- 93
LR+ ++ + V E V + P E+ Y+ L++ + + + LF + +D
Sbjct: 540 LRRGEIKEARKLVNEMVFQGSPL--DEITYNSLIKGLCRAGEVDKARSLFEKMLRDGHAP 597
Query: 94 NELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNIL 153
+ + N L+ G+++ ++E+ K+M + G + + FN LI GR + +
Sbjct: 598 SNISCNILINGLCRSGMVEEAVEFQKEMVLRGSTPDIVTFNSLINGLCRAGRIEDGLTMF 657
Query: 154 RQMKADKVAPHVSTFHILM 172
R+++A+ + P TF+ LM
Sbjct: 658 RKLQAEGIPPDTVTFNTLM 676
>sp|Q9LQ14|PPR96_ARATH Pentatricopeptide repeat-containing protein At1g62930,
chloroplastic OS=Arabidopsis thaliana GN=At1g62930 PE=2
SV=2
Length = 629
Score = 82.4 bits (202), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 100/433 (23%), Positives = 183/433 (42%), Gaps = 37/433 (8%)
Query: 58 YRPKELDYSYLLEFTIKNHGISQGEKLFC-CIPKDYQNELL-YNNLVIACLDKGVIKLSL 115
Y+P + ++ L+ ++ S+ L + + Q +L Y +V +G I L+L
Sbjct: 181 YQPNTVTFNTLIHGLFLHNKASEAVALIDRMVARGCQPDLFTYGTVVNGLCKRGDIDLAL 240
Query: 116 EYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIE 175
+KKM +++ +I + N+ +M + P+V T++ L++
Sbjct: 241 SLLKKMEKGKIEADVVIYTTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCL 300
Query: 176 ANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAV-ARLYTVAETYVEALEKSMTGN- 233
N ++ SDM ++ PN V++ L A +L + Y E +++S+ +
Sbjct: 301 CNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDI 360
Query: 234 -NWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELW 292
+S+L ++ L + K + + + PNV +Y I+ F + +V EL+
Sbjct: 361 FTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNV--VTYNTLIKGFCKAKRVEEGMELF 418
Query: 293 LEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALG-C-- 349
EM + T YN++I + G D A + K+M +G P+ ITY L G C
Sbjct: 419 REMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSILLDGLCKY 478
Query: 350 ----------------------FKSNLVEEGF-KA--LELGMKLITTKKVRSSTPWLETT 384
+ N++ EG KA +E G L + ++ P +
Sbjct: 479 GKLEKALVVFEYLQKSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVIIY 538
Query: 385 LSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVK--AKINDPNLLRRMIL 442
++I F KG A+ LF E+K+ + YNTLI+A ++ K L++ M
Sbjct: 539 TTMISGFCRKGLKEEADALFREMKEDGTLPNSGTYNTLIRARLRDGDKAASAELIKEMRS 598
Query: 443 GGARPDAETYSLL 455
G DA T S++
Sbjct: 599 CGFVGDASTISMV 611
Score = 62.0 bits (149), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 75/350 (21%), Positives = 138/350 (39%), Gaps = 49/350 (14%)
Query: 111 IKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHI 170
I ++ + +M V+ + + + FN LI + ++ +M A P + T+
Sbjct: 166 ISEAVALVDQMFVMEYQPNTVTFNTLIHGLFLHNKASEAVALIDRMVARGCQPDLFTYGT 225
Query: 171 LMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSM 230
++ +I+ + + M++ ++E + V Y + A + A ++
Sbjct: 226 VVNGLCKRGDIDLALSLLKKMEKGKIEADVVIYTTIIDALCNYKNVNDALNLFTEMDNKG 285
Query: 231 TGNNWSTLDVLIILYGYLAKGKDLERIWATVQEL---PNVRSKSYVLAIEAFGRIAQVSR 287
N T + LI + D R+ + + E PNV + S + I+AF + ++
Sbjct: 286 IRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSAL--IDAFVKEGKLVE 343
Query: 288 AEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLAL 347
AE+L+ EM Y+S+I+ +C + +D+A + + M C PN +TY L
Sbjct: 344 AEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIK 403
Query: 348 GCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEEL 407
G K+ VEEG + LF E+
Sbjct: 404 GFCKAKRVEEGME------------------------------------------LFREM 421
Query: 408 KKANYTKYTFVYNTLIKAYVKAKIND--PNLLRRMILGGARPDAETYSLL 455
+ T YNTLI+ +A D + ++M+ G PD TYS+L
Sbjct: 422 SQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSIL 471
Score = 61.6 bits (148), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 55/218 (25%), Positives = 96/218 (44%), Gaps = 13/218 (5%)
Query: 244 LYGYLAKGKDLERIWATVQELPNVRSK----SYVLAIEAFGRIAQVSRAEELWLEMQSVK 299
L +AK + + + + + N+R SY + I F R +Q+ A + +M +
Sbjct: 86 LLSAIAKMNKFDLVISLGERMQNLRISYDLYSYNILINCFCRRSQLPLALAVLGKMMKLG 145
Query: 300 QLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGF 359
+S+++ YC I +A L+ +M + +PN +T+ L G F N E
Sbjct: 146 YEPDIVTLSSLLNGYCHGKRISEAVALVDQMFVMEYQPNTVTFNTLIHGLFLHNKASE-- 203
Query: 360 KALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVY 419
+ LI R P L T +++ ++GD+ A +L ++++K +Y
Sbjct: 204 -----AVALIDRMVARGCQPDLFTYGTVVNGLCKRGDIDLALSLLKKMEKGKIEADVVIY 258
Query: 420 NTLIKAYVKAK-INDP-NLLRRMILGGARPDAETYSLL 455
T+I A K +ND NL M G RP+ TY+ L
Sbjct: 259 TTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSL 296
>sp|Q8RWS8|PP199_ARATH Pentatricopeptide repeat-containing protein At2g41720
OS=Arabidopsis thaliana GN=EMB2654 PE=2 SV=1
Length = 822
Score = 82.4 bits (202), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 84/395 (21%), Positives = 163/395 (41%), Gaps = 55/395 (13%)
Query: 4 LPRGEPVGSAFQSWM----REGFPVHRGEIFHSINRLRKLQLNKRALEVMEWVIRERPYR 59
L R E V SW+ R+ FPV + ++R ++L + V +W+ ++ Y
Sbjct: 88 LNRWEEVDGVLNSWVGRFARKNFPV----LIRELSRRGCIEL---CVNVFKWMKIQKNYC 140
Query: 60 PKELDYSYLLEFTIKNHGISQGEKLF------CCIPK---------------------DY 92
+ Y+ ++ +++ + Q LF C P +
Sbjct: 141 ARNDIYNMMIRLHARHNWVDQARGLFFEMQKWSCKPDAETYDALINAHGRAGQWRWAMNL 200
Query: 93 QNELL----------YNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSS 142
+++L YNNL+ AC G + +LE KKM G + N ++ S
Sbjct: 201 MDDMLRAAIAPSRSTYNNLINACGSSGNWREALEVCKKMTDNGVGPDLVTHNIVLSAYKS 260
Query: 143 PGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDM--KRSEVEPNE 200
+ + MK KV P +TF+I++ + + +++ M KR+E P+
Sbjct: 261 GRQYSKALSYFELMKGAKVRPDTTTFNIIIYCLSKLGQSSQALDLFNSMREKRAECRPDV 320
Query: 201 VSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWAT 260
V++ + ++V EA+ N + + L+ Y +
Sbjct: 321 VTFTSIMHLYSVKGEIENCRAVFEAMVAEGLKPNIVSYNALMGAYAVHGMSGTALSVLGD 380
Query: 261 VQE---LPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKN 317
+++ +P+V SY + ++GR Q +A+E++L M+ ++ YN++I Y N
Sbjct: 381 IKQNGIIPDV--VSYTCLLNSYGRSRQPGKAKEVFLMMRKERRKPNVVTYNALIDAYGSN 438
Query: 318 GFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKS 352
GF+ +A + ++M +G KPN ++ L C +S
Sbjct: 439 GFLAEAVEIFRQMEQDGIKPNVVSVCTLLAACSRS 473
Score = 65.9 bits (159), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 61/282 (21%), Positives = 125/282 (44%), Gaps = 16/282 (5%)
Query: 94 NELLYNNLVIACLDKGVIKLSLEYMKKMR---VLGHSISYLVFNRLIILNSSPGRRKTIP 150
N + YN L+ A G+ +L + ++ ++ +SY + PG+ K
Sbjct: 354 NIVSYNALMGAYAVHGMSGTALSVLGDIKQNGIIPDVVSYTCLLNSYGRSRQPGKAK--- 410
Query: 151 NILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAH 210
+ M+ ++ P+V T++ L+ ++ + ++++ M++ ++PN VS C L A
Sbjct: 411 EVFLMMRKERRKPNVVTYNALIDAYGSNGFLAEAVEIFRQMEQDGIKPNVVSVCTLLAAC 470
Query: 211 AVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSK 270
+ ++ +T + A + N + + I G +LE+ A Q + + K
Sbjct: 471 SRSKKKVNVDTVLSAAQSRGINLNTAAYNSAI---GSYINAAELEKAIALYQSMRKKKVK 527
Query: 271 ----SYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGL 326
++ + I R+++ A EM+ + E Y+SV+ Y K G + +A +
Sbjct: 528 ADSVTFTILISGSCRMSKYPEAISYLKEMEDLSIPLTKEVYSSVLCAYSKQGQVTEAESI 587
Query: 327 LKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKL 368
+M M GC+P+ I Y + N E+ KA EL +++
Sbjct: 588 FNQMKMAGCEPDVIAYTSM---LHAYNASEKWGKACELFLEM 626
Score = 40.0 bits (92), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 41/166 (24%), Positives = 66/166 (39%), Gaps = 7/166 (4%)
Query: 258 WATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKN 317
W +Q+ R+ Y + I R V +A L+ EMQ E Y+++I+ + +
Sbjct: 132 WMKIQKNYCARNDIYNMMIRLHARHNWVDQARGLFFEMQKWSCKPDAETYDALINAHGRA 191
Query: 318 GFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSS 377
G A L+ +M P+ TY +L C S E ALE+ K+
Sbjct: 192 GQWRWAMNLMDDMLRAAIAPSRSTYNNLINACGSSGNWRE---ALEVCKKMTDN----GV 244
Query: 378 TPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLI 423
P L T ++ + A + FE +K A T +N +I
Sbjct: 245 GPDLVTHNIVLSAYKSGRQYSKALSYFELMKGAKVRPDTTTFNIII 290
Score = 38.9 bits (89), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 35/166 (21%), Positives = 69/166 (41%), Gaps = 10/166 (6%)
Query: 292 WLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFK 351
W+++Q + YN +I ++ ++ ++D+A GL EM CKP+A TY L +
Sbjct: 132 WMKIQK-NYCARNDIYNMMIRLHARHNWVDQARGLFFEMQKWSCKPDAETYDALINAHGR 190
Query: 352 SNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKAN 411
+ M L+ + P T ++I G+ A + +++
Sbjct: 191 AG-------QWRWAMNLMDDMLRAAIAPSRSTYNNLINACGSSGNWREALEVCKKMTDNG 243
Query: 412 YTKYTFVYNTLIKAYVKAKINDPNLLRRMILGGA--RPDAETYSLL 455
+N ++ AY + L ++ GA RPD T++++
Sbjct: 244 VGPDLVTHNIVLSAYKSGRQYSKALSYFELMKGAKVRPDTTTFNII 289
>sp|Q9LQ16|PPR94_ARATH Pentatricopeptide repeat-containing protein At1g62910
OS=Arabidopsis thaliana GN=At1g62910 PE=2 SV=1
Length = 632
Score = 82.4 bits (202), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 93/410 (22%), Positives = 173/410 (42%), Gaps = 20/410 (4%)
Query: 55 ERPYRPKELDYSYLLEFTIKNHGISQGEKLFC-CIPKDYQNELL-YNNLVIACLDKGVIK 112
E Y+P ++ L+ ++ S+ L + + Q +L+ Y +V +G I
Sbjct: 181 EMGYKPDTFTFTTLIHGLFLHNKASEAVALVDQMVQRGCQPDLVTYGTVVNGLCKRGDID 240
Query: 113 LSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILM 172
L+L +KKM +++N +I N+ +M + P V T+ L+
Sbjct: 241 LALSLLKKMEKGKIEADVVIYNTIIDGLCKYKHMDDALNLFTEMDNKGIRPDVFTYSSLI 300
Query: 173 KIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAV-ARLYTVAETYVEALEKSMT 231
N ++ SDM ++ PN V++ L A +L + Y E +++S+
Sbjct: 301 SCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSID 360
Query: 232 GN--NWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAE 289
+ +S+L ++ L + K + + + PNV +Y I+ F + +V
Sbjct: 361 PDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNV--VTYSTLIKGFCKAKRVEEGM 418
Query: 290 ELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGC 349
EL+ EM + T Y ++I + + D A + K+M G PN +TY L G
Sbjct: 419 ELFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSVGVHPNILTYNILLDGL 478
Query: 350 FKSNLVEEGFKALELGMKLITTKKVRSST--PWLETTLSIIEIFAEKGDVGNAENLFEEL 407
K+ +L ++ + ++ ST P + T +IE + G V + LF L
Sbjct: 479 CKNG---------KLAKAMVVFEYLQRSTMEPDIYTYNIMIEGMCKAGKVEDGWELFCNL 529
Query: 408 KKANYTKYTFVYNTLIKAYVK--AKINDPNLLRRMILGGARPDAETYSLL 455
+ YNT+I + + +K +LL++M G P++ TY+ L
Sbjct: 530 SLKGVSPNVIAYNTMISGFCRKGSKEEADSLLKKMKEDGPLPNSGTYNTL 579
Score = 67.4 bits (163), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 52/187 (27%), Positives = 83/187 (44%), Gaps = 9/187 (4%)
Query: 271 SYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEM 330
+Y + I F R +Q+S A + +M + +S+++ YC + I A L+ +M
Sbjct: 120 TYSIFINCFCRRSQLSLALAVLAKMMKLGYEPDIVTLSSLLNGYCHSKRISDAVALVDQM 179
Query: 331 SMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEI 390
G KP+ T+ L G F N E + L+ R P L T +++
Sbjct: 180 VEMGYKPDTFTFTTLIHGLFLHNKASE-------AVALVDQMVQRGCQPDLVTYGTVVNG 232
Query: 391 FAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKINDP--NLLRRMILGGARPD 448
++GD+ A +L ++++K +YNT+I K K D NL M G RPD
Sbjct: 233 LCKRGDIDLALSLLKKMEKGKIEADVVIYNTIIDGLCKYKHMDDALNLFTEMDNKGIRPD 292
Query: 449 AETYSLL 455
TYS L
Sbjct: 293 VFTYSSL 299
Score = 61.2 bits (147), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 68/333 (20%), Positives = 137/333 (41%), Gaps = 16/333 (4%)
Query: 129 SYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVY 188
S + FN+L+ + + + + ++ QM+ ++ + T+ I + + + V
Sbjct: 82 SIVEFNKLLSAVAKMNKFELVISLGEQMQTLGISHDLYTYSIFINCFCRRSQLSLALAVL 141
Query: 189 SDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYL 248
+ M + EP+ V+ L + ++ + A V+ + + G T +++G
Sbjct: 142 AKMMKLGYEPDIVTLSSLLNGYCHSKRISDAVALVDQMVE--MGYKPDTFTFTTLIHGLF 199
Query: 249 AKGKDLERIWATVQELPNVRSK----SYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKAT 304
K E + A V ++ + +Y + + + A L +M+ K
Sbjct: 200 LHNKASEAV-ALVDQMVQRGCQPDLVTYGTVVNGLCKRGDIDLALSLLKKMEKGKIEADV 258
Query: 305 EQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALEL 364
YN++I CK +D A L EM G +P+ TY L + C + +
Sbjct: 259 VIYNTIIDGLCKYKHMDDALNLFTEMDNKGIRPDVFTYSSL-ISCLCN------YGRWSD 311
Query: 365 GMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIK 424
+L++ R P + T ++I+ F ++G + AE L++E+ K + F Y++LI
Sbjct: 312 ASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLIN 371
Query: 425 AYVKAKIND--PNLLRRMILGGARPDAETYSLL 455
+ D ++ MI P+ TYS L
Sbjct: 372 GFCMHDRLDEAKHMFELMISKDCFPNVVTYSTL 404
Score = 33.9 bits (76), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 30/130 (23%), Positives = 58/130 (44%), Gaps = 3/130 (2%)
Query: 44 RALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQGEKLFC--CIPKDYQNELLYNNL 101
+A+ V E++ R P Y+ ++E K + G +LFC + N + YN +
Sbjct: 486 KAMVVFEYLQRS-TMEPDIYTYNIMIEGMCKAGKVEDGWELFCNLSLKGVSPNVIAYNTM 544
Query: 102 VIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKV 161
+ KG + + +KKM+ G + +N LI G R+ ++++M++
Sbjct: 545 ISGFCRKGSKEEADSLLKKMKEDGPLPNSGTYNTLIRARLRDGDREASAELIKEMRSCGF 604
Query: 162 APHVSTFHIL 171
A ST ++
Sbjct: 605 AGDASTIGLV 614
>sp|Q9LW84|PP236_ARATH Pentatricopeptide repeat-containing protein At3g16010
OS=Arabidopsis thaliana GN=At3g16010 PE=2 SV=1
Length = 642
Score = 82.0 bits (201), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 90/402 (22%), Positives = 172/402 (42%), Gaps = 22/402 (5%)
Query: 33 INRLRKLQLNKRALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQGEKLF------C 86
I+ KL N A+ + + +++ +P E Y+ LL K + + LF
Sbjct: 240 ISSYEKLGRNDSAIRLFDE-MKDNCMQPTEKIYTTLLGIYFKVGKVEKALDLFEEMKRAG 298
Query: 87 CIPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRR 146
C P Y Y L+ G + + + K M G + + N L+ + GR
Sbjct: 299 CSPTVYT----YTELIKGLGKAGRVDEAYGFYKDMLRDGLTPDVVFLNNLMNILGKVGRV 354
Query: 147 KTIPNILRQMKADKVAPHVSTFHILMK--IEANDHNIEGLMKVYSDMKRSEVEPNEVSYC 204
+ + N+ +M + P V +++ ++K E+ H + + + MK V P+E +Y
Sbjct: 355 EELTNVFSEMGMWRCTPTVVSYNTVIKALFESKAH-VSEVSSWFDKMKADSVSPSEFTYS 413
Query: 205 ILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQE- 263
IL + A +E +++ + LI G + + ++ ++E
Sbjct: 414 ILIDGYCKTNRVEKALLLLEEMDEKGFPPCPAAYCSLINALGKAKRYEAANELFKELKEN 473
Query: 264 LPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKA 323
NV S+ Y + I+ FG+ ++S A +L+ EM++ YN+++S K G I++A
Sbjct: 474 FGNVSSRVYAVMIKHFGKCGKLSEAVDLFNEMKNQGSGPDVYAYNALMSGMVKAGMINEA 533
Query: 324 SGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLET 383
+ LL++M NGC+ + I ++ L F V +A+E + T K P T
Sbjct: 534 NSLLRKMEENGCRAD-INSHNIILNGFARTGVPR--RAIE----MFETIKHSGIKPDGVT 586
Query: 384 TLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKA 425
+++ FA G A + E+K + Y++++ A
Sbjct: 587 YNTLLGCFAHAGMFEEAARMMREMKDKGFEYDAITYSSILDA 628
Score = 69.7 bits (169), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 87/371 (23%), Positives = 162/371 (43%), Gaps = 28/371 (7%)
Query: 98 YNNLVIACLDKGVIKLSLEYMKKMRVLGHSI-SYLVFNRLIILNSSPGRRKTIPNILRQM 156
YN++++ + +G + E +M G + ++ LI GR + + +M
Sbjct: 200 YNSVILMLMQEGQHEKVHEVYTEMCNEGDCFPDTITYSALISSYEKLGRNDSAIRLFDEM 259
Query: 157 KADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVA-RL 215
K + + P + L+ I +E + ++ +MKR+ P +Y L A R+
Sbjct: 260 KDNCMQPTEKIYTTLLGIYFKVGKVEKALDLFEEMKRAGCSPTVYTYTELIKGLGKAGRV 319
Query: 216 YTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATV---QELPNVRSKSY 272
Y + L +T + L+ L+ + G + + ++L +++ + + P V S +
Sbjct: 320 DEAYGFYKDMLRDGLT-PDVVFLNNLMNILGKVGRVEELTNVFSEMGMWRCTPTVVSYNT 378
Query: 273 VLA--IEAFGRIAQVSRAEELWLEMQSVKQLKATE-QYNSVISVYCKNGFIDKASGLLKE 329
V+ E+ +++VS W + + +E Y+ +I YCK ++KA LL+E
Sbjct: 379 VIKALFESKAHVSEVSS----WFDKMKADSVSPSEFTYSILIDGYCKTNRVEKALLLLEE 434
Query: 330 MSMNGCKPNAITYRHL--ALGCFKS-NLVEEGFKALELGMKLITTKKVRSSTPWLETTLS 386
M G P Y L ALG K E FK L+ ++++
Sbjct: 435 MDEKGFPPCPAAYCSLINALGKAKRYEAANELFKELKENFGNVSSR----------VYAV 484
Query: 387 IIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAK-INDPN-LLRRMILGG 444
+I+ F + G + A +LF E+K + YN L+ VKA IN+ N LLR+M G
Sbjct: 485 MIKHFGKCGKLSEAVDLFNEMKNQGSGPDVYAYNALMSGMVKAGMINEANSLLRKMEENG 544
Query: 445 ARPDAETYSLL 455
R D +++++
Sbjct: 545 CRADINSHNII 555
Score = 56.6 bits (135), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 48/176 (27%), Positives = 77/176 (43%), Gaps = 10/176 (5%)
Query: 276 IEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNG- 334
++A GR VS+A ++ + + K + YNSVI + + G +K + EM G
Sbjct: 169 VKALGRAKMVSKALSVFYQAKGRKCKPTSSTYNSVILMLMQEGQHEKVHEVYTEMCNEGD 228
Query: 335 CKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEK 394
C P+ ITY L E + ++L K P + +++ I+ +
Sbjct: 229 CFPDTITYSALISS-------YEKLGRNDSAIRLFDEMKDNCMQPTEKIYTTLLGIYFKV 281
Query: 395 GDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKINDP--NLLRRMILGGARPD 448
G V A +LFEE+K+A + + Y LIK KA D + M+ G PD
Sbjct: 282 GKVEKALDLFEEMKRAGCSPTVYTYTELIKGLGKAGRVDEAYGFYKDMLRDGLTPD 337
>sp|Q9SZ52|PP344_ARATH Pentatricopeptide repeat-containing protein At4g31850,
chloroplastic OS=Arabidopsis thaliana GN=PGR3 PE=1 SV=1
Length = 1112
Score = 81.6 bits (200), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 102/417 (24%), Positives = 178/417 (42%), Gaps = 27/417 (6%)
Query: 53 IRERPYRPKELDYSYLLEFTIKNHGISQGEKLF------CCIPKDYQNELLYNNLVIACL 106
++E +P + Y+ LL KN I + +LF C P N + +N L
Sbjct: 564 MKEMKLKPTVVTYNTLLAGLGKNGKIQEAIELFEGMVQKGCPP----NTITFNTLFDCLC 619
Query: 107 DKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVS 166
+ L+L+ + KM +G +N +I G+ K QMK V P
Sbjct: 620 KNDEVTLALKMLFKMMDMGCVPDVFTYNTIIFGLVKNGQVKEAMCFFHQMKK-LVYPDFV 678
Query: 167 TFHILMKIEANDHNIEGLMKVYSD-MKRSEVEPNEVSYCILATAHAVARLYTVAETYVEA 225
T L+ IE K+ ++ + +P + + L + A ++ E
Sbjct: 679 TLCTLLPGVVKASLIEDAYKIITNFLYNCADQPANLFWEDLIGSILAEAGIDNAVSFSER 738
Query: 226 LEKSMTGNNWSTLDVLIILYGY----LAKGKDL-ERIWATVQELPNVRSKSYVLAIEAFG 280
L + + ++ V II Y ++ + L E+ + P + +Y L I
Sbjct: 739 LVANGICRDGDSILVPIIRYSCKHNNVSGARTLFEKFTKDLGVQPKL--PTYNLLIGGLL 796
Query: 281 RIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAI 340
+ A++++L+++S + YN ++ Y K+G ID+ L KEMS + C+ N I
Sbjct: 797 EADMIEIAQDVFLQVKSTGCIPDVATYNFLLDAYGKSGKIDELFELYKEMSTHECEANTI 856
Query: 341 TYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNA 400
T+ + G K+ V++ AL+L L++ R +P T +I+ ++ G + A
Sbjct: 857 THNIVISGLVKAGNVDD---ALDLYYDLMSD---RDFSPTACTYGPLIDGLSKSGRLYEA 910
Query: 401 ENLFEELKKANYTKYTFVYNTLIKAYVKAKINDP--NLLRRMILGGARPDAETYSLL 455
+ LFE + +YN LI + KA D L +RM+ G RPD +TYS+L
Sbjct: 911 KQLFEGMLDYGCRPNCAIYNILINGFGKAGEADAACALFKRMVKEGVRPDLKTYSVL 967
Score = 73.6 bits (179), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 74/313 (23%), Positives = 133/313 (42%), Gaps = 18/313 (5%)
Query: 151 NILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAH 210
++ Q+K+ P V+T++ L+ I+ L ++Y +M E E N +++ I+ +
Sbjct: 806 DVFLQVKSTGCIPDVATYNFLLDAYGKSGKIDELFELYKEMSTHECEANTITHNIVISGL 865
Query: 211 AVA-RLYTVAETYVEALEK---SMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPN 266
A + + Y + + S T + L + G L + K L PN
Sbjct: 866 VKAGNVDDALDLYYDLMSDRDFSPTACTYGPLIDGLSKSGRLYEAKQLFEGMLDYGCRPN 925
Query: 267 VRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGL 326
Y + I FG+ + A L+ M + Y+ ++ C G +D+
Sbjct: 926 C--AIYNILINGFGKAGEADAACALFKRMVKEGVRPDLKTYSVLVDCLCMVGRVDEGLHY 983
Query: 327 LKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLS 386
KE+ +G P+ + Y + G KS+ +EE AL L ++ T++ + TP L T S
Sbjct: 984 FKELKESGLNPDVVCYNLIINGLGKSHRLEE---ALVLFNEMKTSRGI---TPDLYTYNS 1037
Query: 387 IIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKINDPN----LLRRMIL 442
+I G V A ++ E+++A F +N LI+ Y + P + + M+
Sbjct: 1038 LILNLGIAGMVEEAGKIYNEIQRAGLEPNVFTFNALIRGYSLS--GKPEHAYAVYQTMVT 1095
Query: 443 GGARPDAETYSLL 455
GG P+ TY L
Sbjct: 1096 GGFSPNTGTYEQL 1108
Score = 72.4 bits (176), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 106/486 (21%), Positives = 200/486 (41%), Gaps = 63/486 (12%)
Query: 18 MRE-GFPVHRGEIFHSINRLRKLQLNKRALEVMEWVIRERPYRPKELDYSYLLEFTIKNH 76
MRE GF ++ I+ L K + A+EV +I E +RP YS L+ K
Sbjct: 179 MREFGFVLNAYSYNGLIHLLLKSRFCTEAMEVYRRMILE-GFRPSLQTYSSLMVGLGKRR 237
Query: 77 GISQGEKLFCCIPKDYQNELLYNN-----LVIACLDK-GVIKLSLEYMKKMRVLGHSISY 130
I L K+ + L N + I L + G I + E +K+M G
Sbjct: 238 DIDSVMGLL----KEMETLGLKPNVYTFTICIRVLGRAGKINEAYEILKRMDDEGCGPDV 293
Query: 131 LVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSD 190
+ + LI + + + +MK + P T+ L+ +++ +++ + + +S+
Sbjct: 294 VTYTVLIDALCTARKLDCAKEVFEKMKTGRHKPDRVTYITLLDRFSDNRDLDSVKQFWSE 353
Query: 191 MKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAK 250
M++ P+ V++ IL A A + A ++ + N T + LI + +
Sbjct: 354 MEKDGHVPDVVTFTILVDALCKAGNFGEAFDTLDVMRDQGILPNLHTYNTLICGLLRVHR 413
Query: 251 GKDLERIWATVQELP-NVRSKSYVLAIEAFGR---------------------------- 281
D ++ ++ L + +Y++ I+ +G+
Sbjct: 414 LDDALELFGNMESLGVKPTAYTYIVFIDYYGKSGDSVSALETFEKMKTKGIAPNIVACNA 473
Query: 282 ----IAQVSR---AEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNG 334
+A+ R A++++ ++ + + + YN ++ Y K G ID+A LL EM NG
Sbjct: 474 SLYSLAKAGRDREAKQIFYGLKDIGLVPDSVTYNMMMKCYSKVGEIDEAIKLLSEMMENG 533
Query: 335 CKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEK 394
C+P+ I L +K++ V+E +K + MK + K P + T +++ +
Sbjct: 534 CEPDVIVVNSLINTLYKADRVDEAWKMF-MRMKEMKLK------PTVVTYNTLLAGLGKN 586
Query: 395 GDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKINDP-----NLLRRMILGGARPDA 449
G + A LFE + + T +NTL K ND +L +M+ G PD
Sbjct: 587 GKIQEAIELFEGMVQKGCPPNTITFNTLFDCLCK---NDEVTLALKMLFKMMDMGCVPDV 643
Query: 450 ETYSLL 455
TY+ +
Sbjct: 644 FTYNTI 649
Score = 51.2 bits (121), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 57/270 (21%), Positives = 108/270 (40%), Gaps = 19/270 (7%)
Query: 98 YNNLVIACLDKGVIKLSLEYMKKMRVLG---HSISYLVFNRLIILNSSPGRRKTIPNILR 154
YN L+ L + +LE M LG + +Y+VF I G +
Sbjct: 401 YNTLICGLLRVHRLDDALELFGNMESLGVKPTAYTYIVF---IDYYGKSGDSVSALETFE 457
Query: 155 QMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHA-VA 213
+MK +AP++ + + A +++ +K + P+ V+Y ++ ++ V
Sbjct: 458 KMKTKGIAPNIVACNASLYSLAKAGRDREAKQIFYGLKDIGLVPDSVTYNMMMKCYSKVG 517
Query: 214 RLYTVAETYVEALEKSMTGNNWSTLDVLII--LYGYLAKGKDLERIWATVQELPNVRSKS 271
+ + E +E N DV+++ L L K ++ W + ++ K
Sbjct: 518 EIDEAIKLLSEMME------NGCEPDVIVVNSLINTLYKADRVDEAWKMFMRMKEMKLKP 571
Query: 272 YVLA----IEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLL 327
V+ + G+ ++ A EL+ M T +N++ CKN + A +L
Sbjct: 572 TVVTYNTLLAGLGKNGKIQEAIELFEGMVQKGCPPNTITFNTLFDCLCKNDEVTLALKML 631
Query: 328 KEMSMNGCKPNAITYRHLALGCFKSNLVEE 357
+M GC P+ TY + G K+ V+E
Sbjct: 632 FKMMDMGCVPDVFTYNTIIFGLVKNGQVKE 661
>sp|Q9SH26|PP102_ARATH Pentatricopeptide repeat-containing protein At1g63400
OS=Arabidopsis thaliana GN=At1g63400 PE=2 SV=1
Length = 577
Score = 81.6 bits (200), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 90/408 (22%), Positives = 167/408 (40%), Gaps = 24/408 (5%)
Query: 55 ERPYRPKELDYSYLLEFTIKNHGISQGEKLF------CCIPKDYQNELLYNNLVIACLDK 108
E YRP + ++ L+ ++ S+ L C P N + Y +V +
Sbjct: 183 EMGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQP----NLVTYGVVVNGLCKR 238
Query: 109 GVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTF 168
G I L+ + KM + ++++ +I N+ +M+ V P+V T+
Sbjct: 239 GDIDLAFNLLNKMEAAKIEANVVIYSTVIDSLCKYRHEDDALNLFTEMENKGVRPNVITY 298
Query: 169 HILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAV-ARLYTVAETYVEALE 227
L+ N ++ SDM ++ PN V++ L A +L + Y E ++
Sbjct: 299 SSLISCLCNYERWSDASRLLSDMIERKINPNVVTFNALIDAFVKEGKLVEAEKLYDEMIK 358
Query: 228 KSMTGN--NWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQV 285
+S+ + +S+L ++ L + K + + + PNV +Y I F + ++
Sbjct: 359 RSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNV--VTYNTLINGFCKAKRI 416
Query: 286 SRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHL 345
EL+ EM + T Y ++I + + D A + K+M +G PN +TY L
Sbjct: 417 DEGVELFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSDGVHPNIMTYNTL 476
Query: 346 ALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFE 405
G K+ +E+ E + K+ P + T +IE + G V + +LF
Sbjct: 477 LDGLCKNGKLEKAMVVFE----YLQRSKME---PTIYTYNIMIEGMCKAGKVEDGWDLFC 529
Query: 406 ELKKANYTKYTFVYNTLIKAYVKAKIND--PNLLRRMILGGARPDAET 451
L +YNT+I + + + + L R+M G PD+ T
Sbjct: 530 SLSLKGVKPDVIIYNTMISGFCRKGLKEEADALFRKMREDGPLPDSGT 577
Score = 65.5 bits (158), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 51/187 (27%), Positives = 83/187 (44%), Gaps = 9/187 (4%)
Query: 271 SYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEM 330
+Y + I F R +Q+S A L +M + + +S+++ YC I A L+ +M
Sbjct: 122 TYNILINCFCRRSQISLALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQM 181
Query: 331 SMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEI 390
G +P+ IT+ L G F N E + L+ R P L T ++
Sbjct: 182 VEMGYRPDTITFTTLIHGLFLHNKASE-------AVALVDRMVQRGCQPNLVTYGVVVNG 234
Query: 391 FAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKINDP--NLLRRMILGGARPD 448
++GD+ A NL +++ A +Y+T+I + K + D NL M G RP+
Sbjct: 235 LCKRGDIDLAFNLLNKMEAAKIEANVVIYSTVIDSLCKYRHEDDALNLFTEMENKGVRPN 294
Query: 449 AETYSLL 455
TYS L
Sbjct: 295 VITYSSL 301
Score = 58.5 bits (140), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 102/495 (20%), Positives = 196/495 (39%), Gaps = 80/495 (16%)
Query: 34 NRLRKLQLNKRALEVMEWVIRERPYRPKELDYSYLLEFTIK----NHGISQGEKLFCCIP 89
N L ++L+ A+ + +++ RP P +++ LL K + IS GEK+
Sbjct: 59 NGLHSMKLDD-AIGLFGGMVKSRPL-PSIFEFNKLLSAIAKMKKFDLVISLGEKM---QR 113
Query: 90 KDYQNELLYNNLVIACL-DKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKT 148
+ L N++I C + I L+L + KM LG+ S + + L+ R
Sbjct: 114 LGISHNLYTYNILINCFCRRSQISLALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISD 173
Query: 149 IPNILRQM-----KADKVA------------------------------PHVSTFHILMK 173
++ QM + D + P++ T+ +++
Sbjct: 174 AVALVDQMVEMGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVN 233
Query: 174 IEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGN 233
+I+ + + M+ +++E N V Y + + R A +E
Sbjct: 234 GLCKRGDIDLAFNLLNKMEAAKIEANVVIYSTVIDSLCKYRHEDDALNLFTEMENKGVRP 293
Query: 234 NWSTLDVLIILYGYLAKGKDLERIWATVQEL---PNVRSKSYVLAIEAFGRIAQVSRAEE 290
N T LI + D R+ + + E PNV ++ I+AF + ++ AE+
Sbjct: 294 NVITYSSLISCLCNYERWSDASRLLSDMIERKINPNV--VTFNALIDAFVKEGKLVEAEK 351
Query: 291 LWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCF 350
L+ EM Y+S+I+ +C + +D+A + + M C PN +TY L G
Sbjct: 352 LYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLINGFC 411
Query: 351 KSNLVEEG--------------------------FKALELGMKLITTKKVRSST--PWLE 382
K+ ++EG F+A + + K++ S P +
Sbjct: 412 KAKRIDEGVELFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSDGVHPNIM 471
Query: 383 TTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKA-KINDP-NLLRRM 440
T ++++ + G + A +FE L+++ + YN +I+ KA K+ D +L +
Sbjct: 472 TYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWDLFCSL 531
Query: 441 ILGGARPDAETYSLL 455
L G +PD Y+ +
Sbjct: 532 SLKGVKPDVIIYNTM 546
>sp|O64624|PP163_ARATH Pentatricopeptide repeat-containing protein At2g18940
OS=Arabidopsis thaliana GN=At2g18940 PE=2 SV=1
Length = 822
Score = 81.6 bits (200), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 90/428 (21%), Positives = 189/428 (44%), Gaps = 28/428 (6%)
Query: 43 KRALEVMEWVIRERPYRPKELDYSYLLEFTIKNHG----ISQGEKLFCCIPKDYQNELL- 97
+RA+ + EW++ +LD+ ++E ++ G S KL IP Q LL
Sbjct: 153 ERAVFLFEWLVLSSNSGALKLDHQ-VIEIFVRILGRESQYSVAAKLLDKIP--LQEYLLD 209
Query: 98 ---YNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRR-KTIPNIL 153
Y ++ A G + +++ ++M+ +G S + + +N ++ + GR + I +L
Sbjct: 210 VRAYTTILHAYSRTGKYEKAIDLFERMKEMGPSPTLVTYNVILDVFGKMGRSWRKILGVL 269
Query: 154 RQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVA 213
+M++ + T ++ A + + + ++++K EP V+Y L A
Sbjct: 270 DEMRSKGLKFDEFTCSTVLSACAREGLLREAKEFFAELKSCGYEPGTVTYNALLQVFGKA 329
Query: 214 RLYTVAETYVEALEKSMTGNNWSTLDVLIILY---GYLAKGKDLERIWATVQELPNVRSK 270
+YT A + ++ +E++ + T + L+ Y G+ + + + +PN +
Sbjct: 330 GVYTEALSVLKEMEENSCPADSVTYNELVAAYVRAGFSKEAAGVIEMMTKKGVMPN--AI 387
Query: 271 SYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEM 330
+Y I+A+G+ + A +L+ M+ + T YN+V+S+ K ++ +L +M
Sbjct: 388 TYTTVIDAYGKAGKEDEALKLFYSMKEAGCVPNTCTYNAVLSLLGKKSRSNEMIKMLCDM 447
Query: 331 SMNGCKPNAITYRHLALGCFKSNLVEEGFKALE-LGMKLITTKKVRSSTPWLETTLSIIE 389
NGC PN T+ + C G K ++ ++ K P +T ++I
Sbjct: 448 KSNGCSPNRATWNTMLALC--------GNKGMDKFVNRVFREMKSCGFEPDRDTFNTLIS 499
Query: 390 IFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKI--NDPNLLRRMILGGARP 447
+ G +A ++ E+ +A + YN L+ A + + N++ M G +P
Sbjct: 500 AYGRCGSEVDASKMYGEMTRAGFNACVTTYNALLNALARKGDWRSGENVISDMKSKGFKP 559
Query: 448 DAETYSLL 455
+YSL+
Sbjct: 560 TETSYSLM 567
Score = 63.5 bits (153), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 78/391 (19%), Positives = 157/391 (40%), Gaps = 28/391 (7%)
Query: 51 WVIRERPYRPKELDYSYLLEFTIKNHGISQGEKLFC------CIPKDYQNELLYNNLVIA 104
+ ++E P Y+ +L K ++ K+ C C P N +N ++
Sbjct: 410 YSMKEAGCVPNTCTYNAVLSLLGKKSRSNEMIKMLCDMKSNGCSP----NRATWNTMLAL 465
Query: 105 CLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPH 164
C +KG+ K ++M+ G FN LI G + +M
Sbjct: 466 CGNKGMDKFVNRVFREMKSCGFEPDRDTFNTLISAYGRCGSEVDASKMYGEMTRAGFNAC 525
Query: 165 VSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVE 224
V+T++ L+ A + V SDMK +P E SY ++ +A Y E
Sbjct: 526 VTTYNALLNALARKGDWRSGENVISDMKSKGFKPTETSYSLMLQCYAKGGNYLGIERIEN 585
Query: 225 ALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQEL---PNVRSKSYVLAIEAFGR 281
+++ +W L L++ ER + ++ P++ + +L+I F R
Sbjct: 586 RIKEGQIFPSWMLLRTLLLANFKCRALAGSERAFTLFKKHGYKPDMVIFNSMLSI--FTR 643
Query: 282 IAQVSRAEELWLEMQSVKQLKATEQ---YNSVISVYCKNGFIDKASGLLKEMSMNGCKPN 338
+AE + ++S+++ + YNS++ +Y + G KA +LK + + KP+
Sbjct: 644 NNMYDQAEGI---LESIREDGLSPDLVTYNSLMDMYVRRGECWKAEEILKTLEKSQLKPD 700
Query: 339 AITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVG 398
++Y + G + L++E + L +T + +R P + T + + + G
Sbjct: 701 LVSYNTVIKGFCRRGLMQEAVRML----SEMTERGIR---PCIFTYNTFVSGYTAMGMFA 753
Query: 399 NAENLFEELKKANYTKYTFVYNTLIKAYVKA 429
E++ E + K + + ++ Y +A
Sbjct: 754 EIEDVIECMAKNDCRPNELTFKMVVDGYCRA 784
>sp|Q9SR00|PP213_ARATH Pentatricopeptide repeat-containing protein At3g04760,
chloroplastic OS=Arabidopsis thaliana GN=At3g04760 PE=2
SV=1
Length = 602
Score = 81.3 bits (199), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 91/419 (21%), Positives = 184/419 (43%), Gaps = 18/419 (4%)
Query: 44 RALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQGEKLFCCI-PKDYQNELLYNNLV 102
+A+ VME I E+ +P Y+ L+ K + I ++ + KD+ + + N++
Sbjct: 142 KAVRVME--ILEKFGQPDVFAYNALINGFCKMNRIDDATRVLDRMRSKDFSPDTVTYNIM 199
Query: 103 IACL-DKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKV 161
I L +G + L+L+ + ++ + + + LI G ++ +M + +
Sbjct: 200 IGSLCSRGKLDLALKVLNQLLSDNCQPTVITYTILIEATMLEGGVDEALKLMDEMLSRGL 259
Query: 162 APHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAET 221
P + T++ +++ + ++ ++ +++ EP+ +SY IL A + E
Sbjct: 260 KPDMFTYNTIIRGMCKEGMVDRAFEMVRNLELKGCEPDVISYNILLRALLNQGKWEEGEK 319
Query: 222 YVEALEKSMTGNNWSTLDVLIILY---GYLAKGKDLERIWATVQELPNVRSKSYVLAIEA 278
+ + N T +LI G + + +L ++ P+ + SY I A
Sbjct: 320 LMTKMFSEKCDPNVVTYSILITTLCRDGKIEEAMNLLKLMKEKGLTPD--AYSYDPLIAA 377
Query: 279 FGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPN 338
F R ++ A E M S L YN+V++ CKNG D+A + ++ GC PN
Sbjct: 378 FCREGRLDVAIEFLETMISDGCLPDIVNYNTVLATLCKNGKADQALEIFGKLGEVGCSPN 437
Query: 339 AITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVG 398
+ +Y + + S + +AL + +++++ P T S+I +G V
Sbjct: 438 SSSYNTMFSALWSSG---DKIRALHMILEMMSN----GIDPDEITYNSMISCLCREGMVD 490
Query: 399 NAENLFEELKKANYTKYTFVYNTLIKAYVKA-KINDP-NLLRRMILGGARPDAETYSLL 455
A L +++ + YN ++ + KA +I D N+L M+ G RP+ TY++L
Sbjct: 491 EAFELLVDMRSCEFHPSVVTYNIVLLGFCKAHRIEDAINVLESMVGNGCRPNETTYTVL 549
Score = 35.8 bits (81), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 46/184 (25%), Positives = 79/184 (42%), Gaps = 19/184 (10%)
Query: 87 CIPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRR 146
C+P D N YN ++ G +LE K+ +G S + +N + S G +
Sbjct: 399 CLP-DIVN---YNTVLATLCKNGKADQALEIFGKLGEVGCSPNSSSYNTMFSALWSSGDK 454
Query: 147 KTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCIL 206
+++ +M ++ + P T++ ++ + ++ ++ DM+ E P+ V+Y I+
Sbjct: 455 IRALHMILEMMSNGIDPDEITYNSMISCLCREGMVDEAFELLVDMRSCEFHPSVVTYNIV 514
Query: 207 ATAHAVARLYTVAETYVEALEKSMTGN----NWSTLDVL---IILYGYLAK----GKDLE 255
A E + LE SM GN N +T VL I GY A+ DL
Sbjct: 515 LLGFCKAHR---IEDAINVLE-SMVGNGCRPNETTYTVLIEGIGFAGYRAEAMELANDLV 570
Query: 256 RIWA 259
RI A
Sbjct: 571 RIDA 574
>sp|Q9SV46|PP282_ARATH Pentatricopeptide repeat-containing protein At3g54980,
mitochondrial OS=Arabidopsis thaliana GN=At3g54980 PE=2
SV=1
Length = 851
Score = 80.1 bits (196), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 92/356 (25%), Positives = 157/356 (44%), Gaps = 22/356 (6%)
Query: 109 GVIKLSLEYMKKMRVLGHSISYLVFN-RLIILNSSPGRRKTIPNILRQMKADKVAPHVST 167
G ++ +LE+ KKM VLG + S VF+ II G++ L + +V
Sbjct: 388 GEMEKALEFYKKMEVLGLTPS--VFHVHTIIQGWLKGQKHEEALKLFDESFETGLANVFV 445
Query: 168 FHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAE-TYVEAL 226
+ ++ + ++ S M+ + PN VSY + H + +A + L
Sbjct: 446 CNTILSWLCKQGKTDEATELLSKMESRGIGPNVVSYNNVMLGHCRQKNMDLARIVFSNIL 505
Query: 227 EKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPN----VRSKSYVLAIEAFGRI 282
EK + NN++ IL + D + V + + V Y I ++
Sbjct: 506 EKGLKPNNYT----YSILIDGCFRNHDEQNALEVVNHMTSSNIEVNGVVYQTIINGLCKV 561
Query: 283 AQVSRAEELWLEMQSVKQLKAT-EQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAIT 341
Q S+A EL M K+L + YNS+I + K G +D A +EM NG PN IT
Sbjct: 562 GQTSKARELLANMIEEKRLCVSCMSYNSIIDGFFKEGEMDSAVAAYEEMCGNGISPNVIT 621
Query: 342 YRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAE 401
Y L G K+N +++ ALE+ ++ K V+ P ++I+ F ++ ++ +A
Sbjct: 622 YTSLMNGLCKNNRMDQ---ALEMRDEM-KNKGVKLDIPAYG---ALIDGFCKRSNMESAS 674
Query: 402 NLFEELKKANYTKYTFVYNTLIKAY--VKAKINDPNLLRRMILGGARPDAETYSLL 455
LF EL + +YN+LI + + + +L ++M+ G R D TY+ L
Sbjct: 675 ALFSELLEEGLNPSQPIYNSLISGFRNLGNMVAALDLYKKMLKDGLRCDLGTYTTL 730
Score = 51.2 bits (121), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 76/348 (21%), Positives = 139/348 (39%), Gaps = 48/348 (13%)
Query: 146 RKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSY-C 204
R NIL + + P+ T+ IL+ +H+ + ++V + M S +E N V Y
Sbjct: 498 RIVFSNILEK----GLKPNNYTYSILIDGCFRNHDEQNALEVVNHMTSSNIEVNGVVYQT 553
Query: 205 ILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQEL 264
I+ V + E +E+ S + I+ G+ +G +++ A +E+
Sbjct: 554 IINGLCKVGQTSKARELLANMIEEKRLC--VSCMSYNSIIDGFFKEG-EMDSAVAAYEEM 610
Query: 265 ------PNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNG 318
PNV +Y + + ++ +A E+ EM++ Y ++I +CK
Sbjct: 611 CGNGISPNV--ITYTSLMNGLCKNNRMDQALEMRDEMKNKGVKLDIPAYGALIDGFCKRS 668
Query: 319 FIDKASGLLKEMSMNGCKPNAITYRHL------------ALGCFKSNLVEEGFKA----- 361
++ AS L E+ G P+ Y L AL +K ++++G +
Sbjct: 669 NMESASALFSELLEEGLNPSQPIYNSLISGFRNLGNMVAALDLYKK-MLKDGLRCDLGTY 727
Query: 362 ------------LELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKK 409
L L +L T + P I+ ++KG +FEE+KK
Sbjct: 728 TTLIDGLLKDGNLILASELYTEMQAVGLVPDEIIYTVIVNGLSKKGQFVKVVKMFEEMKK 787
Query: 410 ANYTKYTFVYNTLIKA-YVKAKINDP-NLLRRMILGGARPDAETYSLL 455
N T +YN +I Y + +++ L M+ G PD T+ +L
Sbjct: 788 NNVTPNVLIYNAVIAGHYREGNLDEAFRLHDEMLDKGILPDGATFDIL 835
Score = 45.4 bits (106), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 43/162 (26%), Positives = 74/162 (45%), Gaps = 12/162 (7%)
Query: 272 YVLAIEAFGRIAQVSRAEELWLEMQSVKQ-LKATEQYNSVISVYCKNGFIDKASGLLKEM 330
Y LA++A + ++ A L EM+ K + + E Y SVI K G +D A L EM
Sbjct: 271 YSLAVQACCKTLDLAMANSLLREMKEKKLCVPSQETYTSVILASVKQGNMDDAIRLKDEM 330
Query: 331 SMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLET-TLSI-I 388
+G N + L G K+N +L L+ K+ P + T S+ I
Sbjct: 331 LSDGISMNVVAATSLITGHCKNN---------DLVSALVLFDKMEKEGPSPNSVTFSVLI 381
Query: 389 EIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAK 430
E F + G++ A +++++ T F +T+I+ ++K +
Sbjct: 382 EWFRKNGEMEKALEFYKKMEVLGLTPSVFHVHTIIQGWLKGQ 423
Score = 45.1 bits (105), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 59/318 (18%), Positives = 131/318 (41%), Gaps = 16/318 (5%)
Query: 53 IRERPYRPKELDYSYLLEFTIKNHGISQGEKLFCCIPKDYQNELLYNNLVIACLDKGVIK 112
I E+ +P YS L++ +NH + + + + N +V + G+ K
Sbjct: 504 ILEKGLKPNNYTYSILIDGCFRNH---DEQNALEVVNHMTSSNIEVNGVVYQTIINGLCK 560
Query: 113 LSLEYMKKMRVLGHSI-------SYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHV 165
+ + K +L + I S + +N +I G + +M + ++P+V
Sbjct: 561 VG-QTSKARELLANMIEEKRLCVSCMSYNSIIDGFFKEGEMDSAVAAYEEMCGNGISPNV 619
Query: 166 STFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAV-ARLYTVAETYVE 224
T+ LM ++ ++ +++ +MK V+ + +Y L + + + + + E
Sbjct: 620 ITYTSLMNGLCKNNRMDQALEMRDEMKNKGVKLDIPAYGALIDGFCKRSNMESASALFSE 679
Query: 225 ALEKSMTGNN--WSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRI 282
LE+ + + +++L G + DL + +++ +Y I+ +
Sbjct: 680 LLEEGLNPSQPIYNSLISGFRNLGNMVAALDLYK--KMLKDGLRCDLGTYTTLIDGLLKD 737
Query: 283 AQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITY 342
+ A EL+ EMQ+V + Y +++ K G K + +EM N PN + Y
Sbjct: 738 GNLILASELYTEMQAVGLVPDEIIYTVIVNGLSKKGQFVKVVKMFEEMKKNNVTPNVLIY 797
Query: 343 RHLALGCFKSNLVEEGFK 360
+ G ++ ++E F+
Sbjct: 798 NAVIAGHYREGNLDEAFR 815
Score = 34.3 bits (77), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 20/113 (17%), Positives = 53/113 (46%)
Query: 98 YNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMK 157
Y L+ L G + L+ E +M+ +G +++ ++ S G+ + + +MK
Sbjct: 727 YTTLIDGLLKDGNLILASELYTEMQAVGLVPDEIIYTVIVNGLSKKGQFVKVVKMFEEMK 786
Query: 158 ADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAH 210
+ V P+V ++ ++ + N++ +++ +M + P+ ++ IL +
Sbjct: 787 KNNVTPNVLIYNAVIAGHYREGNLDEAFRLHDEMLDKGILPDGATFDILVSGQ 839
>sp|Q9LFF1|PP281_ARATH Pentatricopeptide repeat-containing protein At3g53700,
chloroplastic OS=Arabidopsis thaliana GN=MEE40 PE=2 SV=1
Length = 754
Score = 80.1 bits (196), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 77/316 (24%), Positives = 142/316 (44%), Gaps = 10/316 (3%)
Query: 98 YNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMK 157
YN+++ G +K ++E + +M S + + +N LI + + + R +
Sbjct: 333 YNSVISGLCKLGEVKEAVEVLDQMITRDCSPNTVTYNTLISTLCKENQVEEATELARVLT 392
Query: 158 ADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYT 217
+ + P V TF+ L++ N M+++ +M+ EP+E +Y +L +
Sbjct: 393 SKGILPDVCTFNSLIQGLCLTRNHRVAMELFEEMRSKGCEPDEFTYNMLIDSLCSKGKLD 452
Query: 218 VAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVR-SKSYVLAI 276
A ++ +E S + T + LI + K ++ E I+ ++ R S +Y I
Sbjct: 453 EALNMLKQMELSGCARSVITYNTLIDGFCKANKTREAEEIFDEMEVHGVSRNSVTYNTLI 512
Query: 277 EAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCK 336
+ + +V A +L +M Q YNS+++ +C+ G I KA+ +++ M+ NGC+
Sbjct: 513 DGLCKSRRVEDAAQLMDQMIMEGQKPDKYTYNSLLTHFCRGGDIKKAADIVQAMTSNGCE 572
Query: 337 PNAITYRHLALGCFKSNLVEEGFKAL-ELGMKLITTKKVRSSTPWLETTLSIIEIFAEKG 395
P+ +TY L G K+ VE K L + MK I TP +I+ K
Sbjct: 573 PDIVTYGTLISGLCKAGRVEVASKLLRSIQMKGINL------TPHAYN--PVIQGLFRKR 624
Query: 396 DVGNAENLFEELKKAN 411
A NLF E+ + N
Sbjct: 625 KTTEAINLFREMLEQN 640
Score = 68.9 bits (167), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 80/403 (19%), Positives = 160/403 (39%), Gaps = 93/403 (23%)
Query: 133 FNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMK 192
+NR++ L K + +M + P VSTF++L+K H + + + DM
Sbjct: 157 YNRMLNLLVDGNSLKLVEISHAKMSVWGIKPDVSTFNVLIKALCRAHQLRPAILMLEDMP 216
Query: 193 RSEVEPNEVSYCILATAHAVARLYTVAETYVEA--------LEKSMT--GNNWSTLDVLI 242
+ P+E ++ TV + Y+E + + M G +WS + V +
Sbjct: 217 SYGLVPDEKTF------------TTVMQGYIEEGDLDGALRIREQMVEFGCSWSNVSVNV 264
Query: 243 ILYGYLAKGKDLERIWATVQELPNVRS--------------------------------- 269
I++G+ +G+ +E +QE+ N
Sbjct: 265 IVHGFCKEGR-VEDALNFIQEMSNQDGFFPDQYTFNTLVNGLCKAGHVKHAIEIMDVMLQ 323
Query: 270 -------KSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDK 322
+Y I ++ +V A E+ +M + T YN++IS CK +++
Sbjct: 324 EGYDPDVYTYNSVISGLCKLGEVKEAVEVLDQMITRDCSPNTVTYNTLISTLCKENQVEE 383
Query: 323 ASGLLKEMSMNGCKPNAITYRHL---------------------ALGC----FKSNLVEE 357
A+ L + ++ G P+ T+ L + GC F N++ +
Sbjct: 384 ATELARVLTSKGILPDVCTFNSLIQGLCLTRNHRVAMELFEEMRSKGCEPDEFTYNMLID 443
Query: 358 GFKA---LELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTK 414
+ L+ + ++ ++ + T ++I+ F + AE +F+E++ ++
Sbjct: 444 SLCSKGKLDEALNMLKQMELSGCARSVITYNTLIDGFCKANKTREAEEIFDEMEVHGVSR 503
Query: 415 YTFVYNTLIKAYVKA-KIND-PNLLRRMILGGARPDAETYSLL 455
+ YNTLI K+ ++ D L+ +MI+ G +PD TY+ L
Sbjct: 504 NSVTYNTLIDGLCKSRRVEDAAQLMDQMIMEGQKPDKYTYNSL 546
Score = 64.7 bits (156), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 97/467 (20%), Positives = 193/467 (41%), Gaps = 73/467 (15%)
Query: 16 SWMREGFPVHRGEIFHSINRLRKLQLNKRALEVME--------WVIR----------ERP 57
WM + F + F+ NR+ L ++ +L+++E W I+ +
Sbjct: 142 DWMIDEFGLKPDTHFY--NRMLNLLVDGNSLKLVEISHAKMSVWGIKPDVSTFNVLIKAL 199
Query: 58 YRPKELDYSYLLEFTIKNHGISQGEKLFCCIPKDYQNELLYNNLVIACLDKGVIKLSLEY 117
R +L + L+ + ++G+ EK F + + Y +++G + +L
Sbjct: 200 CRAHQLRPAILMLEDMPSYGLVPDEKTFTTVMQGY-------------IEEGDLDGALRI 246
Query: 118 MKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMK-ADKVAPHVSTFHILMKIEA 176
++M G S S + N ++ GR + N +++M D P TF+ L+
Sbjct: 247 REQMVEFGCSWSNVSVNVIVHGFCKEGRVEDALNFIQEMSNQDGFFPDQYTFNTLVNGLC 306
Query: 177 NDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGN--- 233
+++ +++ M + +P+ +Y + + +L V E VE L++ +T +
Sbjct: 307 KAGHVKHAIEIMDVMLQEGYDPDVYTYN--SVISGLCKLGEVKEA-VEVLDQMITRDCSP 363
Query: 234 ---NWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEE 290
++TL + + + +L R+ + LP+V + + ++ R +V A E
Sbjct: 364 NTVTYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTRNHRV--AME 421
Query: 291 LWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCF 350
L+ EM+S YN +I C G +D+A +LK+M ++GC + ITY L G
Sbjct: 422 LFEEMRSKGCEPDEFTYNMLIDSLCSKGKLDEALNMLKQMELSGCARSVITYNTLIDGFC 481
Query: 351 KSNLV---EEGFKALEL-GMK------------LITTKKVRSSTPWLETTL--------- 385
K+N EE F +E+ G+ L +++V + ++ +
Sbjct: 482 KANKTREAEEIFDEMEVHGVSRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIMEGQKPDKY 541
Query: 386 ---SIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKA 429
S++ F GD+ A ++ + + Y TLI KA
Sbjct: 542 TYNSLLTHFCRGGDIKKAADIVQAMTSNGCEPDIVTYGTLISGLCKA 588
Score = 39.7 bits (91), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 72/350 (20%), Positives = 131/350 (37%), Gaps = 75/350 (21%)
Query: 33 INRLRKLQLNKRALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQGEKL-------- 84
I+ L KL K A+EV++ +I R P + Y+ L+ K + + + +L
Sbjct: 337 ISGLCKLGEVKEAVEVLDQMIT-RDCSPNTVTYNTLISTLCKENQVEEATELARVLTSKG 395
Query: 85 ----FC---------CIPKDYQ----------------NELLYNNLVIACLDKGVIKLSL 115
C C+ ++++ +E YN L+ + KG + +L
Sbjct: 396 ILPDVCTFNSLIQGLCLTRNHRVAMELFEEMRSKGCEPDEFTYNMLIDSLCSKGKLDEAL 455
Query: 116 EYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIE 175
+K+M + G + S + +N LI + + I +M+ V+ + T++ L+
Sbjct: 456 NMLKQMELSGCARSVITYNTLIDGFCKANKTREAEEIFDEMEVHGVSRNSVTYNTLIDGL 515
Query: 176 ANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNW 235
+E ++ M +P++ +Y L T A V+A MT N
Sbjct: 516 CKSRRVEDAAQLMDQMIMEGQKPDKYTYNSLLTHFCRGGDIKKAADIVQA----MTSNGC 571
Query: 236 STLDVLIILYGYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEM 295
+ I+ YG L G + +V A +L +
Sbjct: 572 ---EPDIVTYGTLISG---------------------------LCKAGRVEVASKLLRSI 601
Query: 296 QSVKQLKATEQ-YNSVISVYCKNGFIDKASGLLKEM-SMNGCKPNAITYR 343
Q +K + T YN VI + +A L +EM N P+A++YR
Sbjct: 602 Q-MKGINLTPHAYNPVIQGLFRKRKTTEAINLFREMLEQNEAPPDAVSYR 650
>sp|P0C7Q7|PPR38_ARATH Putative pentatricopeptide repeat-containing protein At1g12700,
mitochondrial OS=Arabidopsis thaliana GN=At1g12700 PE=3
SV=1
Length = 602
Score = 79.7 bits (195), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 65/332 (19%), Positives = 147/332 (44%), Gaps = 8/332 (2%)
Query: 98 YNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMK 157
Y+ ++ + G I ++ K+M G S + +N L+ G+ +L+ M
Sbjct: 231 YSTIIDSLCRDGCIDAAISLFKEMETKGIKSSVVTYNSLVRGLCKAGKWNDGALLLKDMV 290
Query: 158 ADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYT 217
+ ++ P+V TF++L+ + + ++ ++Y +M + PN ++Y L + + +
Sbjct: 291 SREIVPNVITFNVLLDVFVKEGKLQEANELYKEMITRGISPNIITYNTLMDGYCMQNRLS 350
Query: 218 VAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNV-RSKSYVLAI 276
A ++ + ++ + T LI Y + + D +++ + + V + +Y + +
Sbjct: 351 EANNMLDLMVRNKCSPDIVTFTSLIKGYCMVKRVDDGMKVFRNISKRGLVANAVTYSILV 410
Query: 277 EAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCK 336
+ F + ++ AEEL+ EM S L Y ++ C NG ++KA + +++ +
Sbjct: 411 QGFCQSGKIKLAEELFQEMVSHGVLPDVMTYGILLDGLCDNGKLEKALEIFEDLQKSKMD 470
Query: 337 PNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGD 396
+ Y + G K VE+ + L + + P + T +I +KG
Sbjct: 471 LGIVMYTTIIEGMCKGGKVEDAW-------NLFCSLPCKGVKPNVMTYTVMISGLCKKGS 523
Query: 397 VGNAENLFEELKKANYTKYTFVYNTLIKAYVK 428
+ A L ++++ YNTLI+A+++
Sbjct: 524 LSEANILLRKMEEDGNAPNDCTYNTLIRAHLR 555
Score = 61.2 bits (147), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 46/187 (24%), Positives = 89/187 (47%), Gaps = 9/187 (4%)
Query: 271 SYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEM 330
+Y + R S A +L +M+ Y+++I C++G ID A L KEM
Sbjct: 195 TYNSIVNGICRSGDTSLALDLLRKMEERNVKADVFTYSTIIDSLCRDGCIDAAISLFKEM 254
Query: 331 SMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEI 390
G K + +TY L G K+ +G L +K + ++++ P + T ++++
Sbjct: 255 ETKGIKSSVVTYNSLVRGLCKAGKWNDG----ALLLKDMVSREI---VPNVITFNVLLDV 307
Query: 391 FAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAY-VKAKINDP-NLLRRMILGGARPD 448
F ++G + A L++E+ + YNTL+ Y ++ ++++ N+L M+ PD
Sbjct: 308 FVKEGKLQEANELYKEMITRGISPNIITYNTLMDGYCMQNRLSEANNMLDLMVRNKCSPD 367
Query: 449 AETYSLL 455
T++ L
Sbjct: 368 IVTFTSL 374
Score = 60.1 bits (144), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 68/321 (21%), Positives = 130/321 (40%), Gaps = 43/321 (13%)
Query: 94 NELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNIL 153
N + +N L+ + +G ++ + E K+M G S + + +N L+ R N+L
Sbjct: 297 NVITFNVLLDVFVKEGKLQEANELYKEMITRGISPNIITYNTLMDGYCMQNRLSEANNML 356
Query: 154 RQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVA 213
M +K +P + TF L+K ++ MKV+ ++ + + N V+Y IL +
Sbjct: 357 DLMVRNKCSPDIVTFTSLIKGYCMVKRVDDGMKVFRNISKRGLVANAVTYSILVQGFCQS 416
Query: 214 RLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSKSYV 273
+AE + + + +G LP+V +Y
Sbjct: 417 GKIKLAEELFQEM----------------VSHGV----------------LPDVM--TYG 442
Query: 274 LAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMN 333
+ ++ ++ +A E++ ++Q K Y ++I CK G ++ A L +
Sbjct: 443 ILLDGLCDNGKLEKALEIFEDLQKSKMDLGIVMYTTIIEGMCKGGKVEDAWNLFCSLPCK 502
Query: 334 GCKPNAITYRHLALG-CFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFA 392
G KPN +TY + G C K +L E L+ + + P T ++I
Sbjct: 503 GVKPNVMTYTVMISGLCKKGSLSEANI--------LLRKMEEDGNAPNDCTYNTLIRAHL 554
Query: 393 EKGDVGNAENLFEELKKANYT 413
GD+ + L EE+K ++
Sbjct: 555 RDGDLTASAKLIEEMKSCGFS 575
Score = 53.1 bits (126), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 56/273 (20%), Positives = 111/273 (40%), Gaps = 43/273 (15%)
Query: 185 MKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIIL 244
+ ++ +M RS P+ V + +A A + + + + + LE + +N TL+++I
Sbjct: 73 IALFQEMIRSRPLPSLVDFSRFFSAIARTKQFNLVLDFCKQLELNGIAHNIYTLNIMINC 132
Query: 245 YGYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKAT 304
+ R A G++ ++ + T
Sbjct: 133 F---------------------CRCCKTCFAYSVLGKVMKLGYEPD-------------T 158
Query: 305 EQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALEL 364
+N++I G + +A L+ M NGC+P+ +TY + G +S L
Sbjct: 159 TTFNTLIKGLFLEGKVSEAVVLVDRMVENGCQPDVVTYNSIVNGICRSG-------DTSL 211
Query: 365 GMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIK 424
+ L+ + R+ + T +II+ G + A +LF+E++ YN+L++
Sbjct: 212 ALDLLRKMEERNVKADVFTYSTIIDSLCRDGCIDAAISLFKEMETKGIKSSVVTYNSLVR 271
Query: 425 AYVKA-KINDPN-LLRRMILGGARPDAETYSLL 455
KA K ND LL+ M+ P+ T+++L
Sbjct: 272 GLCKAGKWNDGALLLKDMVSREIVPNVITFNVL 304
Score = 52.8 bits (125), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 90/457 (19%), Positives = 182/457 (39%), Gaps = 58/457 (12%)
Query: 10 VGSAFQSWMREGFPVHRGEIFHSINRLRKLQLNKR---ALEVMEWVIRERPYRPKELDYS 66
+ S F S R+ + G + RLR ++ + A+ + + +IR RP P +D+S
Sbjct: 35 ISSFFSSCERDFSSISNGNVCFR-ERLRSGIVDIKKDDAIALFQEMIRSRPL-PSLVDFS 92
Query: 67 YLLEFTIKNHGISQGEKLFCCIPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGH 126
+ F I + Q L L++ K++ + G
Sbjct: 93 ----------------RFFSAIARTKQ-----------------FNLVLDFCKQLELNG- 118
Query: 127 SISYLVFNRLIILNSSPGRRKTIP--NILRQMKADKVAPHVSTFHILMKIEANDHNIEGL 184
I++ ++ I++N KT ++L ++ P +TF+ L+K + +
Sbjct: 119 -IAHNIYTLNIMINCFCRCCKTCFAYSVLGKVMKLGYEPDTTTFNTLIKGLFLEGKVSEA 177
Query: 185 MKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIIL 244
+ + M + +P+ V+Y + + ++A + +E+ + T +I
Sbjct: 178 VVLVDRMVENGCQPDVVTYNSIVNGICRSGDTSLALDLLRKMEERNVKADVFTYSTII-- 235
Query: 245 YGYLAKGKDLERIWATVQELPNVRSKSYVLA----IEAFGRIAQVSRAEELWLEMQSVKQ 300
L + ++ + +E+ KS V+ + + + + L +M S +
Sbjct: 236 -DSLCRDGCIDAAISLFKEMETKGIKSSVVTYNSLVRGLCKAGKWNDGALLLKDMVSREI 294
Query: 301 LKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFK 360
+ +N ++ V+ K G + +A+ L KEM G PN ITY L G N + E
Sbjct: 295 VPNVITFNVLLDVFVKEGKLQEANELYKEMITRGISPNIITYNTLMDGYCMQNRLSEANN 354
Query: 361 ALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYN 420
L+L ++ +P + T S+I+ + V + +F + K Y+
Sbjct: 355 MLDLMVR-------NKCSPDIVTFTSLIKGYCMVKRVDDGMKVFRNISKRGLVANAVTYS 407
Query: 421 TLIKAYVKA-KIN-DPNLLRRMILGGARPDAETYSLL 455
L++ + ++ KI L + M+ G PD TY +L
Sbjct: 408 ILVQGFCQSGKIKLAEELFQEMVSHGVLPDVMTYGIL 444
>sp|Q8S8P6|PP180_ARATH Pentatricopeptide repeat-containing protein At2g32630
OS=Arabidopsis thaliana GN=At2g32630 PE=3 SV=1
Length = 624
Score = 79.3 bits (194), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 86/360 (23%), Positives = 161/360 (44%), Gaps = 34/360 (9%)
Query: 111 IKLSLEYMKKMRVLGHSISYLVFNRLIILNS--SPGRRKTIPNILRQMKADKVAPHVSTF 168
I L LE ++M G I+ V++ I++ G + ++++ + P T+
Sbjct: 205 IDLCLEIFRRMVDSGVKIT--VYSLTIVVEGLCRRGEVEKSKKLIKEFSVKGIKPEAYTY 262
Query: 169 HILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAV-ARLYTVAETYVEALE 227
+ ++ + G+ V MK+ V N+V+Y +L ++ + + E E
Sbjct: 263 NTIINAYVKQRDFSGVEGVLKVMKKDGVVYNKVTYTLLMELSVKNGKMSDAEKLFDEMRE 322
Query: 228 KSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELP----NVRSKSYVLAIEAFGRIA 283
+ + S + V L + + +++R + EL + S +Y I+ ++
Sbjct: 323 RGIE----SDVHVYTSLISWNCRKGNMKRAFLLFDELTEKGLSPSSYTYGALIDGVCKVG 378
Query: 284 QVSRAEELWLEMQSVKQLKATE-QYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITY 342
++ AE L EMQS K + T+ +N++I YC+ G +D+AS + M G + + T
Sbjct: 379 EMGAAEILMNEMQS-KGVNITQVVFNTLIDGYCRKGMVDEASMIYDVMEQKGFQADVFTC 437
Query: 343 RHLALGCF-KSNLVEEG----FKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDV 397
+A CF + +E F+ +E G+KL T + ++I+++ ++G+V
Sbjct: 438 NTIA-SCFNRLKRYDEAKQWLFRMMEGGVKLSTV-----------SYTNLIDVYCKEGNV 485
Query: 398 GNAENLFEELKKANYTKYTFVYNTLIKAYVK-AKINDPNLLR-RMILGGARPDAETYSLL 455
A+ LF E+ YN +I AY K KI + LR M G PD+ TY+ L
Sbjct: 486 EEAKRLFVEMSSKGVQPNAITYNVMIYAYCKQGKIKEARKLRANMEANGMDPDSYTYTSL 545
Score = 66.2 bits (160), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 86/368 (23%), Positives = 144/368 (39%), Gaps = 53/368 (14%)
Query: 65 YSYLLEFTIKNHGISQGEKLFC-----CIPKDYQNELLYNNLVIACLDKGVIKLSLEYMK 119
Y+ L+E ++KN +S EKLF I D +Y +L+ KG +K +
Sbjct: 297 YTLLMELSVKNGKMSDAEKLFDEMRERGIESDVH---VYTSLISWNCRKGNMKRAFLLFD 353
Query: 120 KMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDH 179
++ G S S + LI G ++ +M++ V F+ L+
Sbjct: 354 ELTEKGLSPSSYTYGALIDGVCKVGEMGAAEILMNEMQSKGVNITQVVFNTLIDGYCRKG 413
Query: 180 NIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLD 239
++ +Y M++ + + + T + +A + + Y EA W
Sbjct: 414 MVDEASMIYDVMEQKGFQAD------VFTCNTIASCFNRLKRYDEA-------KQW---- 456
Query: 240 VLIILYGYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVK 299
L+ + G L + SY I+ + + V A+ L++EM S
Sbjct: 457 ----LFRMMEGGVKLSTV-------------SYTNLIDVYCKEGNVEEAKRLFVEMSSKG 499
Query: 300 QLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALG-CFKSNLVEEG 358
YN +I YCK G I +A L M NG P++ TY L G C N V+E
Sbjct: 500 VQPNAITYNVMIYAYCKQGKIKEARKLRANMEANGMDPDSYTYTSLIHGECIADN-VDEA 558
Query: 359 FKAL-ELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTF 417
+ E+G+K + V T +I ++ G A L++E+K+ YT
Sbjct: 559 MRLFSEMGLKGLDQNSV--------TYTVMISGLSKAGKSDEAFGLYDEMKRKGYTIDNK 610
Query: 418 VYNTLIKA 425
VY LI +
Sbjct: 611 VYTALIGS 618
Score = 63.9 bits (154), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 77/346 (22%), Positives = 135/346 (39%), Gaps = 17/346 (4%)
Query: 115 LEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKI 174
L+ MKK V+ + ++Y + L + N G+ + +M+ + V + L+
Sbjct: 282 LKVMKKDGVVYNKVTYTLLMELSVKN---GKMSDAEKLFDEMRERGIESDVHVYTSLISW 338
Query: 175 EANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNN 234
N++ ++ ++ + P+ SY A V ++ + + E G N
Sbjct: 339 NCRKGNMKRAFLLFDELTEKGLSPS--SYTYGALIDGVCKVGEMGAAEILMNEMQSKGVN 396
Query: 235 WSTLDVLIILYGYLAKGK-DLERIWATVQELPNVRSKSYVLAIEA--FGRIAQVSRAEEL 291
+ + ++ GY KG D + V E ++ + A F R+ + A++
Sbjct: 397 ITQVVFNTLIDGYCRKGMVDEASMIYDVMEQKGFQADVFTCNTIASCFNRLKRYDEAKQW 456
Query: 292 WLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFK 351
M +T Y ++I VYCK G +++A L EMS G +PNAITY + K
Sbjct: 457 LFRMMEGGVKLSTVSYTNLIDVYCKEGNVEEAKRLFVEMSSKGVQPNAITYNVMIYAYCK 516
Query: 352 SNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKAN 411
++E KL + P T S+I +V A LF E+
Sbjct: 517 QGKIKE-------ARKLRANMEANGMDPDSYTYTSLIHGECIADNVDEAMRLFSEMGLKG 569
Query: 412 YTKYTFVYNTLIKAYVKAKINDP--NLLRRMILGGARPDAETYSLL 455
+ + Y +I KA +D L M G D + Y+ L
Sbjct: 570 LDQNSVTYTVMISGLSKAGKSDEAFGLYDEMKRKGYTIDNKVYTAL 615
>sp|Q9LYZ9|PP362_ARATH Pentatricopeptide repeat-containing protein At5g02860
OS=Arabidopsis thaliana GN=At5g02860 PE=2 SV=1
Length = 819
Score = 79.3 bits (194), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 86/405 (21%), Positives = 160/405 (39%), Gaps = 72/405 (17%)
Query: 90 KDYQNELLYNNLVIACL-----DKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPG 144
KDYQ+ L +N V+A + +G + + ++ G S+ + LI ++ G
Sbjct: 165 KDYQSML--DNSVVAIIISMLGKEGRVSSAANMFNGLQEDGFSLDVYSYTSLISAFANSG 222
Query: 145 RRKTIPNILRQMKADKVAPHVSTFHILMKIEAN-DHNIEGLMKVYSDMKRSEVEPNEVSY 203
R + N+ ++M+ D P + T+++++ + + + MK + P+ +Y
Sbjct: 223 RYREAVNVFKKMEEDGCKPTLITYNVILNVFGKMGTPWNKITSLVEKMKSDGIAPDAYTY 282
Query: 204 CILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQE 263
L T L+ A E ++ + + T + L+ +YG + K+ ++ +
Sbjct: 283 NTLITCCKRGSLHQEAAQVFEEMKAAGFSYDKVTYNALLDVYGKSHRPKEAMKVLNEM-- 340
Query: 264 LPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKA 323
+ N S S V YNS+IS Y ++G +D+A
Sbjct: 341 VLNGFSPSIV--------------------------------TYNSLISAYARDGMLDEA 368
Query: 324 SGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALE----LG-------------- 365
L +M+ G KP+ TY L G ++ VE E G
Sbjct: 369 MELKNQMAEKGTKPDVFTYTTLLSGFERAGKVESAMSIFEEMRNAGCKPNICTFNAFIKM 428
Query: 366 ----------MKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKY 415
MK+ V +P + T +++ +F + G +F+E+K+A +
Sbjct: 429 YGNRGKFTEMMKIFDEINVCGLSPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPE 488
Query: 416 TFVYNTLIKAYVKAKINDP--NLLRRMILGGARPDAETYSLLKLA 458
+NTLI AY + + + RRM+ G PD TY+ + A
Sbjct: 489 RETFNTLISAYSRCGSFEQAMTVYRRMLDAGVTPDLSTYNTVLAA 533
Score = 77.0 bits (188), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 73/367 (19%), Positives = 157/367 (42%), Gaps = 18/367 (4%)
Query: 96 LLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQ 155
+ YN+L+ A G++ ++E +M G + L+ G+ ++ +I +
Sbjct: 350 VTYNSLISAYARDGMLDEAMELKNQMAEKGTKPDVFTYTTLLSGFERAGKVESAMSIFEE 409
Query: 156 MKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARL 215
M+ P++ TF+ +K+ N +MK++ ++ + P+ V++ L +
Sbjct: 410 MRNAGCKPNICTFNAFIKMYGNRGKFTEMMKIFDEINVCGLSPDIVTWNTLLAVFGQNGM 469
Query: 216 YTVAETYVEALEKSMTGNNWSTLDVLIILY---GYLAKGKDLERIWATVQELPNVRSKSY 272
+ + ++++ T + LI Y G + + R P++ + +
Sbjct: 470 DSEVSGVFKEMKRAGFVPERETFNTLISAYSRCGSFEQAMTVYRRMLDAGVTPDLSTYNT 529
Query: 273 VLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSM 332
VLA A R ++E++ EM+ + Y S++ Y I L +E+
Sbjct: 530 VLA--ALARGGMWEQSEKVLAEMEDGRCKPNELTYCSLLHAYANGKEIGLMHSLAEEVYS 587
Query: 333 NGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFA 392
+P A+ + L L C K +L+ E +A + K R +P + T S++ I+
Sbjct: 588 GVIEPRAVLLKTLVLVCSKCDLLPEAERAF-------SELKERGFSPDITTLNSMVSIYG 640
Query: 393 EKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKIND----PNLLRRMILGGARPD 448
+ V A + + +K+ +T YN+L+ Y+ ++ D +LR ++ G +PD
Sbjct: 641 RRQMVAKANGVLDYMKERGFTPSMATYNSLM--YMHSRSADFGKSEEILREILAKGIKPD 698
Query: 449 AETYSLL 455
+Y+ +
Sbjct: 699 IISYNTV 705
Score = 70.9 bits (172), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 69/341 (20%), Positives = 140/341 (41%), Gaps = 49/341 (14%)
Query: 118 MKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEAN 177
K+M+ G FN LI S G + + R+M V P +ST++ ++ A
Sbjct: 477 FKEMKRAGFVPERETFNTLISAYSRCGSFEQAMTVYRRMLDAGVTPDLSTYNTVLAALAR 536
Query: 178 DHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWST 237
E KV ++M+ +PNE++YC L A+A + + + E + +
Sbjct: 537 GGMWEQSEKVLAEMEDGRCKPNELTYCSLLHAYANGKEIGLMHSLAEEVYSGVIEPRAVL 596
Query: 238 LDVLIILYGYLAKGKDLERIWATVQEL---PNVRSKSYVLAIEAFGRIAQVSRAEELWLE 294
L L+++ + ER ++ ++E P++ + + +++I +GR V++A +
Sbjct: 597 LKTLVLVCSKCDLLPEAERAFSELKERGFSPDITTLNSMVSI--YGRRQMVAKANGVLDY 654
Query: 295 MQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNL 354
M+ + YNS++ ++ ++ K+ +L+E+ G KP+ I+Y
Sbjct: 655 MKERGFTPSMATYNSLMYMHSRSADFGKSEEILREILAKGIKPDIISYN----------- 703
Query: 355 VEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTK 414
++I + + +A +F E++ +
Sbjct: 704 -------------------------------TVIYAYCRNTRMRDASRIFSEMRNSGIVP 732
Query: 415 YTFVYNTLIKAYVKAKINDP--NLLRRMILGGARPDAETYS 453
YNT I +Y + + ++R MI G RP+ TY+
Sbjct: 733 DVITYNTFIGSYAADSMFEEAIGVVRYMIKHGCRPNQNTYN 773
Score = 62.4 bits (150), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 100/479 (20%), Positives = 186/479 (38%), Gaps = 86/479 (17%)
Query: 8 EPVGSAFQSWMREGFPVHRGEIFHSINRLRKLQLNKRALEVMEWVIRERPYRPKELDYSY 67
EP +S E +G FH +K L AL +W ++++ Y+ LD S
Sbjct: 125 EPFKDKPESTSSELLAFLKGLGFH-----KKFDL---ALRAFDWFMKQKDYQ-SMLDNSV 175
Query: 68 ---LLEFTIKNHGISQGEKLFCCIPKD--YQNELLYNNLVIACLDKGVIKLSLEYMKKMR 122
++ K +S +F + +D + Y +L+ A + G + ++ KKM
Sbjct: 176 VAIIISMLGKEGRVSSAANMFNGLQEDGFSLDVYSYTSLISAFANSGRYREAVNVFKKME 235
Query: 123 VLGHSISYLVFNRLIILNSSPGRRKT----IPNILRQMKADKVAPHVSTFHIL------- 171
G + + +N +ILN G+ T I +++ +MK+D +AP T++ L
Sbjct: 236 EDGCKPTLITYN--VILNVF-GKMGTPWNKITSLVEKMKSDGIAPDAYTYNTLITCCKRG 292
Query: 172 ----------------------------MKIEANDHNIEGLMKVYSDMKRSEVEPNEVSY 203
+ + H + MKV ++M + P+ V+Y
Sbjct: 293 SLHQEAAQVFEEMKAAGFSYDKVTYNALLDVYGKSHRPKEAMKVLNEMVLNGFSPSIVTY 352
Query: 204 CILATAHAVARLYTVAETYVEALE-KSMTGNNWSTLDVL---IILYGYLAKGKDLERIWA 259
L +A+A + EA+E K+ + DV +L G+ GK +E +
Sbjct: 353 NSLISAYARDGMLD------EAMELKNQMAEKGTKPDVFTYTTLLSGFERAGK-VESAMS 405
Query: 260 TVQELPNVRSKSYVLAIEAF----GRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYC 315
+E+ N K + AF G + + +++ E+ +N++++V+
Sbjct: 406 IFEEMRNAGCKPNICTFNAFIKMYGNRGKFTEMMKIFDEINVCGLSPDIVTWNTLLAVFG 465
Query: 316 KNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGF----KALELGMKLITT 371
+NG + SG+ KEM G P T+ L + E+ + L+ G+
Sbjct: 466 QNGMDSEVSGVFKEMKRAGFVPERETFNTLISAYSRCGSFEQAMTVYRRMLDAGV----- 520
Query: 372 KKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAK 430
TP L T +++ A G +E + E++ Y +L+ AY K
Sbjct: 521 ------TPDLSTYNTVLAALARGGMWEQSEKVLAEMEDGRCKPNELTYCSLLHAYANGK 573
Score = 50.4 bits (119), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 67/302 (22%), Positives = 123/302 (40%), Gaps = 46/302 (15%)
Query: 98 YNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMK 157
+N L+ A G + ++ ++M G + +N ++ + G + +L +M+
Sbjct: 492 FNTLISAYSRCGSFEQAMTVYRRMLDAGVTPDLSTYNTVLAALARGGMWEQSEKVLAEME 551
Query: 158 ADKVAPHVSTFHILMKIEANDHNIEGLM-----KVYSDMKRSEVEPNEVSYCILATAHAV 212
+ P+ T+ L+ AN I GLM +VYS + +EP V L +
Sbjct: 552 DGRCKPNELTYCSLLHAYANGKEI-GLMHSLAEEVYSGV----IEPRAVLLKTLVLVCSK 606
Query: 213 ARLYTVAETYVEALEKSMTGNNWSTLDVLIILYG---YLAKGKDL-----ERIW----AT 260
L AE L++ + +TL+ ++ +YG +AK + ER + AT
Sbjct: 607 CDLLPEAERAFSELKERGFSPDITTLNSMVSIYGRRQMVAKANGVLDYMKERGFTPSMAT 666
Query: 261 VQELPNVRSKS------------------------YVLAIEAFGRIAQVSRAEELWLEMQ 296
L + S+S Y I A+ R ++ A ++ EM+
Sbjct: 667 YNSLMYMHSRSADFGKSEEILREILAKGIKPDIISYNTVIYAYCRNTRMRDASRIFSEMR 726
Query: 297 SVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVE 356
+ + YN+ I Y + ++A G+++ M +GC+PN TY + G K N +
Sbjct: 727 NSGIVPDVITYNTFIGSYAADSMFEEAIGVVRYMIKHGCRPNQNTYNSIVDGYCKLNRKD 786
Query: 357 EG 358
E
Sbjct: 787 EA 788
>sp|Q9SXD1|PPR91_ARATH Pentatricopeptide repeat-containing protein At1g62670,
mitochondrial OS=Arabidopsis thaliana GN=At1g62670 PE=2
SV=2
Length = 630
Score = 79.0 bits (193), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 82/365 (22%), Positives = 156/365 (42%), Gaps = 14/365 (3%)
Query: 96 LLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQ 155
L+YN ++ + +L K+M G + + ++ LI + GR +L
Sbjct: 257 LIYNTIIDGLCKYKHMDDALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSD 316
Query: 156 MKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARL 215
M K+ P V TF L+ + + K+Y +M + ++P+ V+Y L +
Sbjct: 317 MIERKINPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDR 376
Query: 216 YTVAETYVEALEKSMTGNNWSTLDVLI---ILYGYLAKGKDLERIWATVQELPNVRSKSY 272
A+ E + + T + LI Y + +G ++ R + + N + +Y
Sbjct: 377 LDEAKQMFEFMVSKHCFPDVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGN--TVTY 434
Query: 273 VLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSM 332
+ I+ + A+E++ EM S YN+++ CKNG ++KA + + +
Sbjct: 435 NILIQGLFQAGDCDMAQEIFKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQR 494
Query: 333 NGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFA 392
+ +P TY + G K+ VE+G+ L ++ P + ++I F
Sbjct: 495 SKMEPTIYTYNIMIEGMCKAGKVEDGWD-------LFCNLSLKGVKPDVVAYNTMISGFC 547
Query: 393 EKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKINDPN--LLRRMILGGARPDAE 450
KG A+ LF+E+K+ + YNTLI+A ++ + + L++ M G DA
Sbjct: 548 RKGSKEEADALFKEMKEDGTLPNSGCYNTLIRARLRDGDREASAELIKEMRSCGFAGDAS 607
Query: 451 TYSLL 455
T L+
Sbjct: 608 TIGLV 612
Score = 68.6 bits (166), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 51/187 (27%), Positives = 83/187 (44%), Gaps = 9/187 (4%)
Query: 271 SYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEM 330
+Y + I F R +Q+ A + +M + +S+++ YC + I +A L+ +M
Sbjct: 118 TYSILINCFCRRSQLPLALAVLGKMMKLGYEPNIVTLSSLLNGYCHSKRISEAVALVDQM 177
Query: 331 SMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEI 390
+ G +PN +T+ L G F N E M LI + P L T ++
Sbjct: 178 FVTGYQPNTVTFNTLIHGLFLHNKASE-------AMALIDRMVAKGCQPDLVTYGVVVNG 230
Query: 391 FAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKINDP--NLLRRMILGGARPD 448
++GD A NL ++++ +YNT+I K K D NL + M G RP+
Sbjct: 231 LCKRGDTDLAFNLLNKMEQGKLEPGVLIYNTIIDGLCKYKHMDDALNLFKEMETKGIRPN 290
Query: 449 AETYSLL 455
TYS L
Sbjct: 291 VVTYSSL 297
>sp|Q5G1S8|PP241_ARATH Pentatricopeptide repeat-containing protein At3g18110,
chloroplastic OS=Arabidopsis thaliana GN=EMB1270 PE=2
SV=2
Length = 1440
Score = 77.4 bits (189), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 96/431 (22%), Positives = 174/431 (40%), Gaps = 65/431 (15%)
Query: 43 KRALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQGEKLFC-CIPKDYQNELLYNNL 101
+RALEV EW+ + P + +L + + S ++F P +YN +
Sbjct: 172 QRALEVFEWLNLRHWHSPNARMVAAILGVLGRWNQESLAVEIFTRAEPTVGDRVQVYNAM 231
Query: 102 VIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNI----LRQMK 157
+ G + E + MR G + FN LI N+ PN+ L ++
Sbjct: 232 MGVYSRSGKFSKAQELVDAMRQRGCVPDLISFNTLI--NARLKSGGLTPNLAVELLDMVR 289
Query: 158 ADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYT 217
+ P T++ L+ + D N++G +KV+ DM+ +P+ +Y
Sbjct: 290 NSGLRPDAITYNTLLSACSRDSNLDGAVKVFEDMEAHRCQPDLWTY-------------- 335
Query: 218 VAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQE---LPNVRSKSYVL 274
+ +I +YG + ER++ ++ P+ + +Y
Sbjct: 336 ---------------------NAMISVYGRCGLAAEAERLFMELELKGFFPD--AVTYNS 372
Query: 275 AIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEM-SMN 333
+ AF R + +E++ +MQ + K YN++I +Y K G +D A L K+M ++
Sbjct: 373 LLYAFARERNTEKVKEVYQQMQKMGFGKDEMTYNTIIHMYGKQGQLDLALQLYKDMKGLS 432
Query: 334 GCKPNAITYRHLALGCFKSNLVEEGF----KALELGMKLITTKKVRSSTPWLETTLSIIE 389
G P+AITY L K+N E + L++G+K P L+T ++I
Sbjct: 433 GRNPDAITYTVLIDSLGKANRTVEAAALMSEMLDVGIK-----------PTLQTYSALIC 481
Query: 390 IFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKINDP--NLLRRMILGGARP 447
+A+ G AE+ F + ++ Y+ ++ ++ L R MI G P
Sbjct: 482 GYAKAGKREEAEDTFSCMLRSGTKPDNLAYSVMLDVLLRGNETRKAWGLYRDMISDGHTP 541
Query: 448 DAETYSLLKLA 458
Y L+ L
Sbjct: 542 SYTLYELMILG 552
Score = 49.7 bits (117), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 67/317 (21%), Positives = 125/317 (39%), Gaps = 59/317 (18%)
Query: 187 VYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYG 246
V ++++S P+ ++ L +A+A Y A + + G + + + I+L+
Sbjct: 774 VVGNLRQSGRTPDLKTWNSLMSAYAQCGCYERARAIFNTMMRD--GPSPTVESINILLHA 831
Query: 247 YLAKGKDLERIWATVQELPN----VRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLK 302
G+ LE ++ V+EL + + S +L ++AF R + ++++ M++ L
Sbjct: 832 LCVDGR-LEELYVVVEELQDMGFKISKSSILLMLDAFARAGNIFEVKKIYSSMKAAGYLP 890
Query: 303 ATEQYNSVISVYCKNGFIDKASGLLKEM-------------SM----------------- 332
Y +I + CK + A ++ EM SM
Sbjct: 891 TIRLYRMMIELLCKGKRVRDAEIMVSEMEEANFKVELAIWNSMLKMYTAIEDYKKTVQVY 950
Query: 333 -----NGCKPNAITYRHLALGCFKSNLVEEGFKALE----LGMKLITTKKVRSSTPWLET 383
G +P+ TY L + + EEG+ ++ LG+ P L+T
Sbjct: 951 QRIKETGLEPDETTYNTLIIMYCRDRRPEEGYLLMQQMRNLGLD-----------PKLDT 999
Query: 384 TLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKIND--PNLLRRMI 441
S+I F ++ + AE LFEEL Y+T++K + + LL+ M
Sbjct: 1000 YKSLISAFGKQKCLEQAEQLFEELLSKGLKLDRSFYHTMMKISRDSGSDSKAEKLLQMMK 1059
Query: 442 LGGARPDAETYSLLKLA 458
G P T LL ++
Sbjct: 1060 NAGIEPTLATMHLLMVS 1076
Score = 37.0 bits (84), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 35/161 (21%), Positives = 73/161 (45%), Gaps = 16/161 (9%)
Query: 56 RPYRPKELDYSYLLEFTIKNHGISQGEKLFCCIPKDYQNELLYNNLVIACLDKGVIKLSL 115
R RP+E YLL ++N G+ PK Y +L+ A + ++ +
Sbjct: 974 RDRRPEE---GYLLMQQMRNLGLD---------PKLDT----YKSLISAFGKQKCLEQAE 1017
Query: 116 EYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIE 175
+ +++ G + ++ ++ ++ G +L+ MK + P ++T H+LM
Sbjct: 1018 QLFEELLSKGLKLDRSFYHTMMKISRDSGSDSKAEKLLQMMKNAGIEPTLATMHLLMVSY 1077
Query: 176 ANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLY 216
++ N + KV S++K +EVE + Y + A+ ++ Y
Sbjct: 1078 SSSGNPQEAEKVLSNLKDTEVELTTLPYSSVIDAYLRSKDY 1118
>sp|Q8GZ63|PP397_ARATH Pentatricopeptide repeat-containing protein At5g25630
OS=Arabidopsis thaliana GN=At5g25630 PE=2 SV=2
Length = 574
Score = 77.4 bits (189), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 84/376 (22%), Positives = 169/376 (44%), Gaps = 22/376 (5%)
Query: 94 NELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLII---LNSSPGRRKTIP 150
+ + +N ++ A + G ++ +++ + KM+ LG + + +N LI + P R +
Sbjct: 114 DSIFFNAVINAFSESGNMEDAVQALLKMKELGLNPTTSTYNTLIKGYGIAGKPERSSELL 173
Query: 151 NILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAH 210
+++ + V P++ TF++L++ +E +V M+ V P+ V+Y +AT +
Sbjct: 174 DLMLEEGNVDVGPNIRTFNVLVQAWCKKKKVEEAWEVVKKMEECGVRPDTVTYNTIATCY 233
Query: 211 AVARLYTVAETYV--EALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVR 268
AE+ V + + K N T +++ Y + +D R V+ + +R
Sbjct: 234 VQKGETVRAESEVVEKMVMKEKAKPNGRTCGIVVGGYCREGRVRDGLRF---VRRMKEMR 290
Query: 269 SKSYVLA----IEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKAS 324
++ ++ I F + +E+ M+ Y++V++ + G+++KA+
Sbjct: 291 VEANLVVFNSLINGFVEVMDRDGIDEVLTLMKECNVKADVITYSTVMNAWSSAGYMEKAA 350
Query: 325 GLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETT 384
+ KEM G KP+A Y LA G ++ +E KA EL LI S P +
Sbjct: 351 QVFKEMVKAGVKPDAHAYSILAKGYVRA---KEPKKAEELLETLIV-----ESRPNVVIF 402
Query: 385 LSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAY--VKAKINDPNLLRRMIL 442
++I + G + +A +F ++ K + + TL+ Y VK +L+ M
Sbjct: 403 TTVISGWCSNGSMDDAMRVFNKMCKFGVSPNIKTFETLMWGYLEVKQPWKAEEVLQMMRG 462
Query: 443 GGARPDAETYSLLKLA 458
G +P+ T+ LL A
Sbjct: 463 CGVKPENSTFLLLAEA 478
>sp|Q9SUD8|PP340_ARATH Pentatricopeptide repeat-containing protein At4g28010
OS=Arabidopsis thaliana GN=At4g28010 PE=2 SV=1
Length = 704
Score = 76.3 bits (186), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 91/397 (22%), Positives = 170/397 (42%), Gaps = 53/397 (13%)
Query: 96 LLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQ 155
++Y +L+ D G + ++ G S + +N LI G+ K I
Sbjct: 248 VVYTSLIRGFCDCGELDRGKALFDEVLERGDSPCAITYNTLIRGFCKLGQLKEASEIFEF 307
Query: 156 MKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARL 215
M V P+V T+ L+ + +++ + M + EPN V+Y I+ L
Sbjct: 308 MIERGVRPNVYTYTGLIDGLCGVGKTKEALQLLNLMIEKDEEPNAVTYNIIINKLCKDGL 367
Query: 216 YTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLER----IWATVQEL----PNV 267
A VE ++K T + T ++L L G AKG DL+ ++ +++ P+V
Sbjct: 368 VADAVEIVELMKKRRTRPDNITYNIL--LGGLCAKG-DLDEASKLLYLMLKDSSYTDPDV 424
Query: 268 RSKS------------------YVLAIEAFG---------------RIAQVSRAEELWLE 294
S + Y L +E G + V++A ELW +
Sbjct: 425 ISYNALIHGLCKENRLHQALDIYDLLVEKLGAGDRVTTNILLNSTLKAGDVNKAMELWKQ 484
Query: 295 MQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNL 354
+ K ++ ++ Y ++I +CK G ++ A GLL +M ++ +P+ Y C S+L
Sbjct: 485 ISDSKIVRNSDTYTAMIDGFCKTGMLNVAKGLLCKMRVSELQPSVFDYN-----CLLSSL 539
Query: 355 VEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTK 414
+EG +L+ +L + ++ P + + +I+ + GD+ +AE+L + +A +
Sbjct: 540 CKEG--SLDQAWRLFEEMQRDNNFPDVVSFNIMIDGSLKAGDIKSAESLLVGMSRAGLSP 597
Query: 415 YTFVYNTLIKAYVKAKINDP--NLLRRMILGGARPDA 449
F Y+ LI ++K D + +M+ G PDA
Sbjct: 598 DLFTYSKLINRFLKLGYLDEAISFFDKMVDSGFEPDA 634
Score = 53.5 bits (127), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 45/182 (24%), Positives = 82/182 (45%), Gaps = 9/182 (4%)
Query: 276 IEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGC 335
++ R + +A L EM+ + YN+VI +C+ ++KA L EM +GC
Sbjct: 149 LKGLCRNLECGKAVSLLREMRRNSLMPDVFSYNTVIRGFCEGKELEKALELANEMKGSGC 208
Query: 336 KPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKG 395
+ +T+ L K+ ++E M + K L S+I F + G
Sbjct: 209 SWSLVTWGILIDAFCKAGKMDE-------AMGFLKEMKFMGLEADLVVYTSLIRGFCDCG 261
Query: 396 DVGNAENLFEELKKANYTKYTFVYNTLIKAYVK-AKINDPN-LLRRMILGGARPDAETYS 453
++ + LF+E+ + + YNTLI+ + K ++ + + + MI G RP+ TY+
Sbjct: 262 ELDRGKALFDEVLERGDSPCAITYNTLIRGFCKLGQLKEASEIFEFMIERGVRPNVYTYT 321
Query: 454 LL 455
L
Sbjct: 322 GL 323
Score = 51.6 bits (122), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 51/194 (26%), Positives = 82/194 (42%), Gaps = 11/194 (5%)
Query: 264 LPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKA 323
+P+V S Y I F ++ +A EL EM+ + + +I +CK G +D+A
Sbjct: 174 MPDVFS--YNTVIRGFCEGKELEKALELANEMKGSGCSWSLVTWGILIDAFCKAGKMDEA 231
Query: 324 SGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLET 383
G LKEM G + + + Y L G + G L+ G L R +P T
Sbjct: 232 MGFLKEMKFMGLEADLVVYTSLIRG-----FCDCG--ELDRGKALFDEVLERGDSPCAIT 284
Query: 384 TLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVK-AKINDP-NLLRRMI 441
++I F + G + A +FE + + + Y LI K + LL MI
Sbjct: 285 YNTLIRGFCKLGQLKEASEIFEFMIERGVRPNVYTYTGLIDGLCGVGKTKEALQLLNLMI 344
Query: 442 LGGARPDAETYSLL 455
P+A TY+++
Sbjct: 345 EKDEEPNAVTYNII 358
Score = 49.7 bits (117), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 66/288 (22%), Positives = 125/288 (43%), Gaps = 24/288 (8%)
Query: 151 NILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAH 210
++LR+M+ + + P V +++ +++ +E +++ ++MK S + V++ IL A
Sbjct: 163 SLLREMRRNSLMPDVFSYNTVIRGFCEGKELEKALELANEMKGSGCSWSLVTWGILIDAF 222
Query: 211 AVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKG----KDLERIWATVQEL-- 264
A A +++ ++ + L+ +++Y L +G +L+R A E+
Sbjct: 223 CKAGKMDEAMGFLKEMK-------FMGLEADLVVYTSLIRGFCDCGELDRGKALFDEVLE 275
Query: 265 --PNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDK 322
+ + +Y I F ++ Q+ A E++ M Y +I C G +
Sbjct: 276 RGDSPCAITYNTLIRGFCKLGQLKEASEIFEFMIERGVRPNVYTYTGLIDGLCGVGKTKE 335
Query: 323 ASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLE 382
A LL M +PNA+TY + K LV + + +EL K R + P
Sbjct: 336 ALQLLNLMIEKDEEPNAVTYNIIINKLCKDGLVADAVEIVEL-------MKKRRTRPDNI 388
Query: 383 TTLSIIEIFAEKGDVGNAEN-LFEELKKANYTKYTFV-YNTLIKAYVK 428
T ++ KGD+ A L+ LK ++YT + YN LI K
Sbjct: 389 TYNILLGGLCAKGDLDEASKLLYLMLKDSSYTDPDVISYNALIHGLCK 436
>sp|P0C7R3|PP106_ARATH Pentatricopeptide repeat-containing protein At1g64583,
mitochondrial OS=Arabidopsis thaliana GN=At1g64583 PE=2
SV=1
Length = 512
Score = 76.3 bits (186), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 84/373 (22%), Positives = 143/373 (38%), Gaps = 31/373 (8%)
Query: 117 YMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEA 176
+ +KM + G S F LI R ++L +M P + TF L+
Sbjct: 93 FSQKMELYGISHDLYSFTILIHCFCRCSRLSFALSVLGKMMKLGYEPSIVTFGSLLHGFC 152
Query: 177 NDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWS 236
+ I + M +S EPN V Y L +A + +EK G +
Sbjct: 153 LVNRIGDAFSLVILMVKSGYEPNVVVYNTLIDGLCKNGELNIALELLNEMEKKGLGADVV 212
Query: 237 TLDVLIILYGYLAKGKDLERIWATVQELP-NVRSKSYVLAIEAFGRIAQVSRAEELWLEM 295
T + L+ Y + D R+ + + N ++ I+ F + + A+EL+ EM
Sbjct: 213 TYNTLLTGLCYSGRWSDAARMLRDMMKRSINPDVVTFTALIDVFVKQGNLDEAQELYKEM 272
Query: 296 QSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLV 355
YNS+I+ C +G + A M+ GC PN +TY L G K +V
Sbjct: 273 IQSSVDPNNVTYNSIINGLCMHGRLYDAKKTFDLMASKGCFPNVVTYNTLISGFCKFRMV 332
Query: 356 EEGFK----------------------------ALELGMKLITTKKVRSSTPWLETTLSI 387
+EG K L + + + R TP + T +
Sbjct: 333 DEGMKLFQRMSCEGFNADIFTYNTLIHGYCQVGKLRVALDIFCWMVSRRVTPDIITHCIL 392
Query: 388 IEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKA-KINDP-NLLRRMILGGA 445
+ G++ +A F++++++ YN +I KA K+ L R+ + G
Sbjct: 393 LHGLCVNGEIESALVKFDDMRESEKYIGIVAYNIMIHGLCKADKVEKAWELFCRLPVEGV 452
Query: 446 RPDAETYSLLKLA 458
+PDA TY+++ L
Sbjct: 453 KPDARTYTIMILG 465
Score = 63.9 bits (154), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 77/365 (21%), Positives = 142/365 (38%), Gaps = 46/365 (12%)
Query: 29 IFHSINRLRKLQLNKRALEVMEWVIRERPYRPKELDYSYLLE-FTIKNHGISQGEKLFCC 87
+ H R +L AL V+ +++ Y P + + LL F + N +
Sbjct: 112 LIHCFCRCSRLSF---ALSVLGKMMK-LGYEPSIVTFGSLLHGFCLVNRIGDAFSLVILM 167
Query: 88 IPKDYQ-NELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRR 146
+ Y+ N ++YN L+ G + ++LE + +M G + +N L+ GR
Sbjct: 168 VKSGYEPNVVVYNTLIDGLCKNGELNIALELLNEMEKKGLGADVVTYNTLLTGLCYSGRW 227
Query: 147 KTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSY-CI 205
+LR M + P V TF L+ + N++ ++Y +M +S V+PN V+Y I
Sbjct: 228 SDAARMLRDMMKRSINPDVVTFTALIDVFVKQGNLDEAQELYKEMIQSSVDPNNVTYNSI 287
Query: 206 LATAHAVARLYTVAETYVEALEK--------------------------------SMTGN 233
+ RLY +T+ K S G
Sbjct: 288 INGLCMHGRLYDAKKTFDLMASKGCFPNVVTYNTLISGFCKFRMVDEGMKLFQRMSCEGF 347
Query: 234 NWSTLDVLIILYGYLAKGK-----DLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRA 288
N +++GY GK D+ + + P++ ++ + + ++ A
Sbjct: 348 NADIFTYNTLIHGYCQVGKLRVALDIFCWMVSRRVTPDI--ITHCILLHGLCVNGEIESA 405
Query: 289 EELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALG 348
+ +M+ ++ YN +I CK ++KA L + + G KP+A TY + LG
Sbjct: 406 LVKFDDMRESEKYIGIVAYNIMIHGLCKADKVEKAWELFCRLPVEGVKPDARTYTIMILG 465
Query: 349 CFKSN 353
K+
Sbjct: 466 LCKNG 470
Score = 60.8 bits (146), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 64/284 (22%), Positives = 123/284 (43%), Gaps = 16/284 (5%)
Query: 179 HNI--EGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWS 236
H+I E ++ +M S+ P+ V + L TA A R Y + + +E ++
Sbjct: 48 HSIRFEDAFALFFEMVHSQPLPSIVDFTRLLTATANLRRYETVIYFSQKMELYGISHDLY 107
Query: 237 TLDVLIILYGYLAKGKDLERIWATVQEL---PNVRSKSYVLAIEAFGRIAQVSRAEELWL 293
+ +LI + ++ + + +L P++ + +L F + ++ A L +
Sbjct: 108 SFTILIHCFCRCSRLSFALSVLGKMMKLGYEPSIVTFGSLL--HGFCLVNRIGDAFSLVI 165
Query: 294 EMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSN 353
M YN++I CKNG ++ A LL EM G + +TY L G S
Sbjct: 166 LMVKSGYEPNVVVYNTLIDGLCKNGELNIALELLNEMEKKGLGADVVTYNTLLTGLCYSG 225
Query: 354 LVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYT 413
+ + L MK RS P + T ++I++F ++G++ A+ L++E+ +++
Sbjct: 226 RWSDAARMLRDMMK-------RSINPDVVTFTALIDVFVKQGNLDEAQELYKEMIQSSVD 278
Query: 414 KYTFVYNTLIKAY-VKAKINDP-NLLRRMILGGARPDAETYSLL 455
YN++I + ++ D M G P+ TY+ L
Sbjct: 279 PNNVTYNSIINGLCMHGRLYDAKKTFDLMASKGCFPNVVTYNTL 322
>sp|Q0WKV3|PPR36_ARATH Pentatricopeptide repeat-containing protein At1g12300,
mitochondrial OS=Arabidopsis thaliana GN=At1g12300 PE=2
SV=1
Length = 637
Score = 75.9 bits (185), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 86/396 (21%), Positives = 163/396 (41%), Gaps = 37/396 (9%)
Query: 94 NELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNIL 153
N + ++ L+ +G + +LE + +M +GH + N L+ G+ ++
Sbjct: 157 NTITFSTLINGLCLEGRVSEALELVDRMVEMGHKPDLITINTLVNGLCLSGKEAEAMLLI 216
Query: 154 RQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVA 213
+M P+ T+ ++ + M++ M+ ++ + V Y I+
Sbjct: 217 DKMVEYGCQPNAVTYGPVLNVMCKSGQTALAMELLRKMEERNIKLDAVKYSIIIDGLCKH 276
Query: 214 RLYTVAETYVEALEKSMTGNNWSTLDVLIILY---GYLAKGKDLERIWATVQELPNVRSK 270
A +E N T ++LI + G G L R + PNV
Sbjct: 277 GSLDNAFNLFNEMEMKGITTNIITYNILIGGFCNAGRWDDGAKLLRDMIKRKINPNV--V 334
Query: 271 SYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEM 330
++ + I++F + ++ AEEL EM T Y S+I +CK +DKA+ ++ M
Sbjct: 335 TFSVLIDSFVKEGKLREAEELHKEMIHRGIAPDTITYTSLIDGFCKENHLDKANQMVDLM 394
Query: 331 SMNGCKPNAITYRHLALGCFKSNLVEEGFKAL-----------------------ELGMK 367
GC PN T+ L G K+N +++G + ELG K
Sbjct: 395 VSKGCDPNIRTFNILINGYCKANRIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELG-K 453
Query: 368 LITTKKV------RSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNT 421
L K++ R P + T +++ + G+ A +FE+++K+ +YN
Sbjct: 454 LNVAKELFQEMVSRKVPPNIVTYKILLDGLCDNGESEKALEIFEKIEKSKMELDIGIYNI 513
Query: 422 LIKAYVKA-KINDP-NLLRRMILGGARPDAETYSLL 455
+I A K++D +L + L G +P +TY+++
Sbjct: 514 IIHGMCNASKVDDAWDLFCSLPLKGVKPGVKTYNIM 549
Score = 67.8 bits (164), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 80/369 (21%), Positives = 158/369 (42%), Gaps = 18/369 (4%)
Query: 94 NELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNIL 153
N + Y ++ G L++E ++KM + + ++ +I G N+
Sbjct: 227 NAVTYGPVLNVMCKSGQTALAMELLRKMEERNIKLDAVKYSIIIDGLCKHGSLDNAFNLF 286
Query: 154 RQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAV- 212
+M+ + ++ T++IL+ N + K+ DM + ++ PN V++ +L +
Sbjct: 287 NEMEMKGITTNIITYNILIGGFCNAGRWDDGAKLLRDMIKRKINPNVVTFSVLIDSFVKE 346
Query: 213 ARLYTVAETYVEALEKSMTGNN--WSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSK 270
+L E + E + + + + +++L +L K + + + PN+R+
Sbjct: 347 GKLREAEELHKEMIHRGIAPDTITYTSLIDGFCKENHLDKANQMVDLMVSKGCDPNIRT- 405
Query: 271 SYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEM 330
+ + I + + ++ EL+ +M + T YN++I +C+ G ++ A L +EM
Sbjct: 406 -FNILINGYCKANRIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKLNVAKELFQEM 464
Query: 331 SMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLS--II 388
PN +TY+ L G + E KALE+ +K+ S L+ + II
Sbjct: 465 VSRKVPPNIVTYKILLDGLCDNG---ESEKALEI------FEKIEKSKMELDIGIYNIII 515
Query: 389 EIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVK-AKINDPNLL-RRMILGGAR 446
V +A +LF L YN +I K +++ LL R+M G
Sbjct: 516 HGMCNASKVDDAWDLFCSLPLKGVKPGVKTYNIMIGGLCKKGPLSEAELLFRKMEEDGHA 575
Query: 447 PDAETYSLL 455
PD TY++L
Sbjct: 576 PDGWTYNIL 584
Score = 49.3 bits (116), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 71/357 (19%), Positives = 133/357 (37%), Gaps = 53/357 (14%)
Query: 98 YNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMK 157
Y+ ++ G + + +M + G + + + +N LI + GR +LR M
Sbjct: 266 YSIIIDGLCKHGSLDNAFNLFNEMEMKGITTNIITYNILIGGFCNAGRWDDGAKLLRDMI 325
Query: 158 ADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYT 217
K+ P+V TF +L+ + + +++ +M + P+ ++Y L
Sbjct: 326 KRKINPNVVTFSVLIDSFVKEGKLREAEELHKEMIHRGIAPDTITYTSLIDGFCKENHLD 385
Query: 218 VAETYVEALEKSMTGNNWSTLDVLIILY---GYLAKGKDLERIWATVQELPNVRSKSYVL 274
A V+ + N T ++LI Y + G +L R + + + + +Y
Sbjct: 386 KANQMVDLMVSKGCDPNIRTFNILINGYCKANRIDDGLELFRKMSLRGVVAD--TVTYNT 443
Query: 275 AIEAFGRIAQVSRAEELWLEM-----------------------QSVKQLKATEQ----- 306
I+ F + +++ A+EL+ EM +S K L+ E+
Sbjct: 444 LIQGFCELGKLNVAKELFQEMVSRKVPPNIVTYKILLDGLCDNGESEKALEIFEKIEKSK 503
Query: 307 -------YNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEG- 358
YN +I C +D A L + + G KP TY + G K + E
Sbjct: 504 MELDIGIYNIIIHGMCNASKVDDAWDLFCSLPLKGVKPGVKTYNIMIGGLCKKGPLSEAE 563
Query: 359 --FKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYT 413
F+ +E + + W L I GD + L EELK+ ++
Sbjct: 564 LLFRKME--------EDGHAPDGWTYNIL--IRAHLGDGDATKSVKLIEELKRCGFS 610
Score = 37.4 bits (85), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 57/294 (19%), Positives = 115/294 (39%), Gaps = 44/294 (14%)
Query: 56 RPYRPKELDYSYLLE-FTIKNHGISQGEKLFCCIPKDYQ-NELLYNNLVIACLDKGVIKL 113
R P + Y+ L++ F +NH + + + K N +N L+ I
Sbjct: 362 RGIAPDTITYTSLIDGFCKENHLDKANQMVDLMVSKGCDPNIRTFNILINGYCKANRIDD 421
Query: 114 SLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMK 173
LE +KM + G + +N LI G+ + ++M + KV P++ T+ IL+
Sbjct: 422 GLELFRKMSLRGVVADTVTYNTLIQGFCELGKLNVAKELFQEMVSRKVPPNIVTYKILLD 481
Query: 174 IEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGN 233
++ E ++++ +++S++E + +Y
Sbjct: 482 GLCDNGESEKALEIFEKIEKSKMELD-------------IGIYN---------------- 512
Query: 234 NWSTLDVLIILYGYLAKGKDLERIWATVQELP--NVRS--KSYVLAIEAFGRIAQVSRAE 289
II++G + ++ W LP V+ K+Y + I + +S AE
Sbjct: 513 --------IIIHG-MCNASKVDDAWDLFCSLPLKGVKPGVKTYNIMIGGLCKKGPLSEAE 563
Query: 290 ELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYR 343
L+ +M+ YN +I + +G K+ L++E+ G +A T +
Sbjct: 564 LLFRKMEEDGHAPDGWTYNILIRAHLGDGDATKSVKLIEELKRCGFSVDASTIK 617
>sp|Q9LN22|PPR54_ARATH Pentatricopeptide repeat-containing protein At1g20300,
mitochondrial OS=Arabidopsis thaliana GN=At1g20300 PE=2
SV=1
Length = 537
Score = 75.9 bits (185), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 73/335 (21%), Positives = 148/335 (44%), Gaps = 29/335 (8%)
Query: 133 FNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMK 192
+N +I L+ + +++ MK+ V + TF IL++ + ++ M+
Sbjct: 154 YNEMIDLSGKVRQFDLAWHLIDLMKSRNVEISIETFTILIRRYVRAGLASEAVHCFNRME 213
Query: 193 RSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKG- 251
P+++++ I+ + + R + A+++ ++L+ + +I+Y L +G
Sbjct: 214 DYGCVPDKIAFSIVISNLSRKRRASEAQSFFDSLKDRFEPD--------VIVYTNLVRGW 265
Query: 252 ------KDLERIWATVQEL---PNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLK 302
+ E+++ ++ PNV + Y + I+A R Q+SRA +++ +M
Sbjct: 266 CRAGEISEAEKVFKEMKLAGIEPNVYT--YSIVIDALCRCGQISRAHDVFADMLDSGCAP 323
Query: 303 ATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKAL 362
+N+++ V+ K G +K + +M GC+P+ ITY L + +E K L
Sbjct: 324 NAITFNNLMRVHVKAGRTEKVLQVYNQMKKLGCEPDTITYNFLIEAHCRDENLENAVKVL 383
Query: 363 ELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTL 422
+K KK + T IE +K DV A ++ ++ +A T YN L
Sbjct: 384 NTMIK----KKCEVNASTFNTIFRYIE---KKRDVNGAHRMYSKMMEAKCEPNTVTYNIL 436
Query: 423 IKAYVKAKINDP--NLLRRMILGGARPDAETYSLL 455
++ +V +K D + + M P+ TY LL
Sbjct: 437 MRMFVGSKSTDMVLKMKKEMDDKEVEPNVNTYRLL 471
Score = 62.0 bits (149), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 57/294 (19%), Positives = 125/294 (42%), Gaps = 8/294 (2%)
Query: 60 PKELDYSYLLEFTIKNHGISQGEKLFCCIPKDYQNELL-YNNLVIACLDKGVIKLSLEYM 118
P ++ +S ++ + S+ + F + ++ +++ Y NLV G I + +
Sbjct: 219 PDKIAFSIVISNLSRKRRASEAQSFFDSLKDRFEPDVIVYTNLVRGWCRAGEISEAEKVF 278
Query: 119 KKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEAND 178
K+M++ G + ++ +I G+ ++ M AP+ TF+ LM++
Sbjct: 279 KEMKLAGIEPNVYTYSIVIDALCRCGQISRAHDVFADMLDSGCAPNAITFNNLMRVHVKA 338
Query: 179 HNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTL 238
E +++VY+ MK+ EP+ ++Y L AH A + + K N ST
Sbjct: 339 GRTEKVLQVYNQMKKLGCEPDTITYNFLIEAHCRDENLENAVKVLNTMIKKKCEVNASTF 398
Query: 239 DVLIILYGYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSV 298
+ ++ Y+ K +D+ ++ + + + R+ S++ ++ L+M+
Sbjct: 399 NT---IFRYIEKKRDVNGAHRMYSKMMEAKCEPNTVTYNILMRMFVGSKSTDMVLKMKKE 455
Query: 299 KQLKATE----QYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALG 348
K E Y +++++C G + A L KEM C +++ + L
Sbjct: 456 MDDKEVEPNVNTYRLLVTMFCGMGHWNNAYKLFKEMVEEKCLTPSLSLYEMVLA 509
Score = 48.5 bits (114), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 51/246 (20%), Positives = 103/246 (41%), Gaps = 16/246 (6%)
Query: 60 PKELDYSYLLEFTIKNHGISQGEKLFC------CIPKDYQNELLYNNLVIACLDKGVIKL 113
P YS +++ + IS+ +F C P N + +NNL+ + G +
Sbjct: 288 PNVYTYSIVIDALCRCGQISRAHDVFADMLDSGCAP----NAITFNNLMRVHVKAGRTEK 343
Query: 114 SLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMK 173
L+ +M+ LG + +N LI + + +L M K + STF+ + +
Sbjct: 344 VLQVYNQMKKLGCEPDTITYNFLIEAHCRDENLENAVKVLNTMIKKKCEVNASTFNTIFR 403
Query: 174 IEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGN 233
++ G ++YS M ++ EPN V+Y IL ++ + + ++
Sbjct: 404 YIEKKRDVNGAHRMYSKMMEAKCEPNTVTYNILMRMFVGSKSTDMVLKMKKEMDDKEVEP 463
Query: 234 NWSTLDVLIILYGYLAKGKDLERIWATVQE----LPNVRSKSYVLAIEAFGRIAQVSRAE 289
N +T +L+ ++ + + +++ + E P++ VLA R Q+ + E
Sbjct: 464 NVNTYRLLVTMFCGMGHWNNAYKLFKEMVEEKCLTPSLSLYEMVLA--QLRRAGQLKKHE 521
Query: 290 ELWLEM 295
EL +M
Sbjct: 522 ELVEKM 527
>sp|Q9M907|PP217_ARATH Pentatricopeptide repeat-containing protein At3g06920
OS=Arabidopsis thaliana GN=At3g06920 PE=2 SV=1
Length = 871
Score = 75.5 bits (184), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 89/397 (22%), Positives = 166/397 (41%), Gaps = 51/397 (12%)
Query: 100 NLVIACLDK-GVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKA 158
N ++ CL K G + +L+ ++M+ + + +N LI + G+ T + M+
Sbjct: 347 NCILTCLRKMGKVDEALKVFEEMKK-DAAPNLSTYNILIDMLCRAGKLDTAFELRDSMQK 405
Query: 159 DKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHA-VARLYT 217
+ P+V T +I++ ++ ++ +M P+E+++C L V R+
Sbjct: 406 AGLFPNVRTVNIMVDRLCKSQKLDEACAMFEEMDYKVCTPDEITFCSLIDGLGKVGRVDD 465
Query: 218 VAETYVEALE------------------------------KSMTGNNWS-TLDVLIILYG 246
+ Y + L+ K M N S L +L
Sbjct: 466 AYKVYEKMLDSDCRTNSIVYTSLIKNFFNHGRKEDGHKIYKDMINQNCSPDLQLLNTYMD 525
Query: 247 YLAKGKDLERIWATVQELPNVR----SKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLK 302
+ K + E+ A +E+ R ++SY + I + + EL+ M+ +
Sbjct: 526 CMFKAGEPEKGRAMFEEIKARRFVPDARSYSILIHGLIKAGFANETYELFYSMKEQGCVL 585
Query: 303 ATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKAL 362
T YN VI +CK G ++KA LL+EM G +P +TY + G K + ++E +
Sbjct: 586 DTRAYNIVIDGFCKCGKVNKAYQLLEEMKTKGFEPTVVTYGSVIDGLAKIDRLDEAYMLF 645
Query: 363 ELGMKLITTKKVRSSTPWLETTL--SIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYN 420
E + +S L + S+I+ F + G + A + EEL + T + +N
Sbjct: 646 E---------EAKSKRIELNVVIYSSLIDGFGKVGRIDEAYLILEELMQKGLTPNLYTWN 696
Query: 421 TLIKAYVKA-KINDPNL-LRRMILGGARPDAETYSLL 455
+L+ A VKA +IN+ + + M P+ TY +L
Sbjct: 697 SLLDALVKAEEINEALVCFQSMKELKCTPNQVTYGIL 733
Score = 62.8 bits (151), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 74/342 (21%), Positives = 146/342 (42%), Gaps = 17/342 (4%)
Query: 113 LSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILM 172
+ L ++M+ LG+ + +F LI + GR + ++L +MK+ + + +++ +
Sbjct: 186 MMLTLFQQMQELGYEPTVHLFTTLIRGFAKEGRVDSALSLLDEMKSSSLDADIVLYNVCI 245
Query: 173 KIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTG 232
++ K + +++ + ++P+EV+Y + A A E LEK+
Sbjct: 246 DSFGKVGKVDMAWKFFHEIEANGLKPDEVTYTSMIGVLCKANRLDEAVEMFEHLEKNRRV 305
Query: 233 NNWSTLDVLIILYGYLAKGKD----LERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRA 288
+ +I+ YG K + LER A +P+V + + +L ++ +V A
Sbjct: 306 PCTYAYNTMIMGYGSAGKFDEAYSLLERQRAK-GSIPSVIAYNCILT--CLRKMGKVDEA 362
Query: 289 EELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALG 348
+++ EM+ YN +I + C+ G +D A L M G PN T +
Sbjct: 363 LKVFEEMKK-DAAPNLSTYNILIDMLCRAGKLDTAFELRDSMQKAGLFPNVRTVNIMVDR 421
Query: 349 CFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELK 408
KS ++E E + TP T S+I+ + G V +A ++E++
Sbjct: 422 LCKSQKLDEACAMFE-------EMDYKVCTPDEITFCSLIDGLGKVGRVDDAYKVYEKML 474
Query: 409 KANYTKYTFVYNTLIKAYVKA--KINDPNLLRRMILGGARPD 448
++ + VY +LIK + K + + + MI PD
Sbjct: 475 DSDCRTNSIVYTSLIKNFFNHGRKEDGHKIYKDMINQNCSPD 516
Score = 54.7 bits (130), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 86/442 (19%), Positives = 162/442 (36%), Gaps = 76/442 (17%)
Query: 33 INRLRKLQLNKRALEVMEWVIR--ERPYRPKELDYSYLLEFTIKN-HGISQ--------- 80
I LR+L+ RA+E W R E P+ P+ + L+ +N + Q
Sbjct: 69 IGVLRRLKDVNRAIEYFRWYERRTELPHCPESYNSLLLVMARCRNFDALDQILGEMSVAG 128
Query: 81 -GEKLFCCIPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIIL 139
G + CI +V+ C+ ++ + ++ MR ++ + LI
Sbjct: 129 FGPSVNTCI-----------EMVLGCVKANKLREGYDVVQMMRKFKFRPAFSAYTTLIGA 177
Query: 140 NSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPN 199
S+ + + +QM+ P V F L++ A + ++ + + +MK S ++ +
Sbjct: 178 FSAVNHSDMMLTLFQQMQELGYEPTVHLFTTLIRGFAKEGRVDSALSLLDEMKSSSLDAD 237
Query: 200 EVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWA 259
V Y +V I +G + K ++ W
Sbjct: 238 IVLY-----------------------------------NVCIDSFGKVGK---VDMAWK 259
Query: 260 TVQELPNVRSK----SYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYC 315
E+ K +Y I + ++ A E++ ++ +++ T YN++I Y
Sbjct: 260 FFHEIEANGLKPDEVTYTSMIGVLCKANRLDEAVEMFEHLEKNRRVPCTYAYNTMIMGYG 319
Query: 316 KNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVR 375
G D+A LL+ G P+ I Y + K V+E K E MK +
Sbjct: 320 SAGKFDEAYSLLERQRAKGSIPSVIAYNCILTCLRKMGKVDEALKVFE-EMK-------K 371
Query: 376 SSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKINDP- 434
+ P L T +I++ G + A L + ++KA N ++ K++ D
Sbjct: 372 DAAPNLSTYNILIDMLCRAGKLDTAFELRDSMQKAGLFPNVRTVNIMVDRLCKSQKLDEA 431
Query: 435 -NLLRRMILGGARPDAETYSLL 455
+ M PD T+ L
Sbjct: 432 CAMFEEMDYKVCTPDEITFCSL 453
Score = 49.7 bits (117), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 76/374 (20%), Positives = 145/374 (38%), Gaps = 45/374 (12%)
Query: 87 CIPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRR 146
C P +E+ + +L+ G + + + +KM + +V+ LI + GR+
Sbjct: 443 CTP----DEITFCSLIDGLGKVGRVDDAYKVYEKMLDSDCRTNSIVYTSLIKNFFNHGRK 498
Query: 147 KTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCIL 206
+ I + M +P + + M E ++ ++K P+ SY IL
Sbjct: 499 EDGHKIYKDMINQNCSPDLQLLNTYMDCMFKAGEPEKGRAMFEEIKARRFVPDARSYSIL 558
Query: 207 ATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPN 266
H + + ETY G T I++ G+ GK + Q L
Sbjct: 559 I--HGLIKAGFANETYELFYSMKEQGCVLDTRAYNIVIDGFCKCGK----VNKAYQLLEE 612
Query: 267 VRSKSYVLAIEAFGRI----AQVSRAEELWLEMQSVKQLKATEQ---YNSVISVYCKNGF 319
+++K + + +G + A++ R +E ++ + K + Y+S+I + K G
Sbjct: 613 MKTKGFEPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKRIELNVVIYSSLIDGFGKVGR 672
Query: 320 IDKASGLLKEMSMNGCKPNAITYRHL------------ALGCFKS--------NLVEEGF 359
ID+A +L+E+ G PN T+ L AL CF+S N V G
Sbjct: 673 IDEAYLILEELMQKGLTPNLYTWNSLLDALVKAEEINEALVCFQSMKELKCTPNQVTYGI 732
Query: 360 ------KALELGMKLITTKKVRSS--TPWLETTLSIIEIFAEKGDVGNAENLFEELKKAN 411
K + + ++++ P + ++I A+ G++ A LF+ K
Sbjct: 733 LINGLCKVRKFNKAFVFWQEMQKQGMKPSTISYTTMISGLAKAGNIAEAGALFDRFKANG 792
Query: 412 YTKYTFVYNTLIKA 425
+ YN +I+
Sbjct: 793 GVPDSACYNAMIEG 806
Score = 39.7 bits (91), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 68/322 (21%), Positives = 116/322 (36%), Gaps = 61/322 (18%)
Query: 98 YNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMK 157
Y+ L+ + G + E M+ G + +N +I G+ +L +MK
Sbjct: 555 YSILIHGLIKAGFANETYELFYSMKEQGCVLDTRAYNIVIDGFCKCGKVNKAYQLLEEMK 614
Query: 158 ADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYT 217
P V T+ ++ A ++ ++ + K +E N V Y L ++
Sbjct: 615 TKGFEPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKRIELNVVIYSSLI--DGFGKVGR 672
Query: 218 VAETYV---EALEKSMTGN--NW-STLDVLIILYGYLAKGKDLERIWATVQELPNVRSKS 271
+ E Y+ E ++K +T N W S LD L+
Sbjct: 673 IDEAYLILEELMQKGLTPNLYTWNSLLDALV----------------------------- 703
Query: 272 YVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQ---YNSVISVYCKNGFIDKASGLLK 328
+ E + QS+K+LK T Y +I+ CK +KA +
Sbjct: 704 ------------KAEEINEALVCFQSMKELKCTPNQVTYGILINGLCKVRKFNKAFVFWQ 751
Query: 329 EMSMNGCKPNAITYRHLALGCFKS-NLVEEGFKALELGMKLITTKKVRSSTPWLETTLSI 387
EM G KP+ I+Y + G K+ N+ E G L K P ++
Sbjct: 752 EMQKQGMKPSTISYTTMISGLAKAGNIAEAG--------ALFDRFKANGGVPDSACYNAM 803
Query: 388 IEIFAEKGDVGNAENLFEELKK 409
IE + +A +LFEE ++
Sbjct: 804 IEGLSNGNRAMDAFSLFEETRR 825
>sp|Q9FIX3|PP407_ARATH Pentatricopeptide repeat-containing protein At5g39710
OS=Arabidopsis thaliana GN=EMB2745 PE=2 SV=1
Length = 747
Score = 75.5 bits (184), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 77/281 (27%), Positives = 117/281 (41%), Gaps = 18/281 (6%)
Query: 180 NIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLD 239
NI V+ +M S+V PN +Y IL A VA T + +E N T +
Sbjct: 185 NISFAENVFKEMLESQVSPNVFTYNILIRGFCFAGNIDVALTLFDKMETKGCLPNVVTYN 244
Query: 240 VLIILYGYLAKGKD---LERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQ 296
LI Y L K D L R A PN+ SY + I R ++ + EM
Sbjct: 245 TLIDGYCKLRKIDDGFKLLRSMALKGLEPNL--ISYNVVINGLCREGRMKEVSFVLTEMN 302
Query: 297 SVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVE 356
YN++I YCK G +A + EM +G P+ ITY ++L+
Sbjct: 303 RRGYSLDEVTYNTLIKGYCKEGNFHQALVMHAEMLRHGLTPSVITY---------TSLIH 353
Query: 357 EGFKA--LELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTK 414
KA + M+ + +VR P T ++++ F++KG + A + E+ ++
Sbjct: 354 SMCKAGNMNRAMEFLDQMRVRGLCPNERTYTTLVDGFSQKGYMNEAYRVLREMNDNGFSP 413
Query: 415 YTFVYNTLIKAY-VKAKINDP-NLLRRMILGGARPDAETYS 453
YN LI + V K+ D +L M G PD +YS
Sbjct: 414 SVVTYNALINGHCVTGKMEDAIAVLEDMKEKGLSPDVVSYS 454
Score = 73.6 bits (179), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 78/345 (22%), Positives = 135/345 (39%), Gaps = 48/345 (13%)
Query: 96 LLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQ 155
+ Y +L+ + G + ++E++ +MRV G + + L+ S G +LR+
Sbjct: 346 ITYTSLIHSMCKAGNMNRAMEFLDQMRVRGLCPNERTYTTLVDGFSQKGYMNEAYRVLRE 405
Query: 156 MKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARL 215
M + +P V T++ L+ +E + V DMK + P+ VSY + + R
Sbjct: 406 MNDNGFSPSVVTYNALINGHCVTGKMEDAIAVLEDMKEKGLSPDVVSYSTVLS--GFCRS 463
Query: 216 YTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSKSYVLA 275
Y V E E G T+ +Y
Sbjct: 464 YDVDEALRVKREMVEKGIKPDTI--------------------------------TYSSL 491
Query: 276 IEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGC 335
I+ F + A +L+ EM V Y ++I+ YC G ++KA L EM G
Sbjct: 492 IQGFCEQRRTKEACDLYEEMLRVGLPPDEFTYTALINAYCMEGDLEKALQLHNEMVEKGV 551
Query: 336 KPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPW-----------LETT 384
P+ +TY L G K + E + L +KL + V S + ++
Sbjct: 552 LPDVVTYSVLINGLNKQSRTREAKRLL---LKLFYEESVPSDVTYHTLIENCSNIEFKSV 608
Query: 385 LSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKA 429
+S+I+ F KG + A+ +FE + N+ YN +I + +A
Sbjct: 609 VSLIKGFCMKGMMTEADQVFESMLGKNHKPDGTAYNIMIHGHCRA 653
Score = 62.0 bits (149), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 73/294 (24%), Positives = 119/294 (40%), Gaps = 33/294 (11%)
Query: 167 TFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEAL 226
T HIL K K+Y K +++ +V+ L +A ++ ETY
Sbjct: 86 TLHILTKF-----------KLY---KTAQILAEDVAAKTLDDEYASLVFKSLQETY---- 127
Query: 227 EKSMTGNNWSTLDVLIILYGYLA---KGKDLERIWATVQELPNVRSKSYVLAIEAFGRIA 283
+ + S D+++ Y L+ K + + +P V S + VL +
Sbjct: 128 --DLCYSTSSVFDLVVKSYSRLSLIDKALSIVHLAQAHGFMPGVLSYNAVLDATIRSK-R 184
Query: 284 QVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYR 343
+S AE ++ EM + YN +I +C G ID A L +M GC PN +TY
Sbjct: 185 NISFAENVFKEMLESQVSPNVFTYNILIRGFCFAGNIDVALTLFDKMETKGCLPNVVTYN 244
Query: 344 HLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENL 403
L G K +++GF KL+ + ++ P L + +I +G + +
Sbjct: 245 TLIDGYCKLRKIDDGF-------KLLRSMALKGLEPNLISYNVVINGLCREGRMKEVSFV 297
Query: 404 FEELKKANYTKYTFVYNTLIKAYVKAKINDPNLLRR--MILGGARPDAETYSLL 455
E+ + Y+ YNTLIK Y K L+ M+ G P TY+ L
Sbjct: 298 LTEMNRRGYSLDEVTYNTLIKGYCKEGNFHQALVMHAEMLRHGLTPSVITYTSL 351
Score = 50.1 bits (118), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 74/347 (21%), Positives = 141/347 (40%), Gaps = 35/347 (10%)
Query: 94 NELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNIL 153
NE Y LV KG + + +++M G S S + +N LI + G+ + +L
Sbjct: 379 NERTYTTLVDGFSQKGYMNEAYRVLREMNDNGFSPSVVTYNALINGHCVTGKMEDAIAVL 438
Query: 154 RQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVA 213
MK ++P V ++ ++ ++++ ++V +M ++P+ ++Y L
Sbjct: 439 EDMKEKGLSPDVVSYSTVLSGFCRSYDVDEALRVKREMVEKGIKPDTITYSSLIQGFCEQ 498
Query: 214 RLYTVA-ETYVEALEKSMTGNNWSTLDVLIILY---GYLAKGKDLERIWATVQELPNVRS 269
R A + Y E L + + + T LI Y G L K L LP+V
Sbjct: 499 RRTKEACDLYEEMLRVGLPPDEF-TYTALINAYCMEGDLEKALQLHNEMVEKGVLPDV-- 555
Query: 270 KSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKE 329
+Y + I + ++ A+ L L++ + + + Y+++I C N L+K
Sbjct: 556 VTYSVLINGLNKQSRTREAKRLLLKLFYEESVPSDVTYHTLIE-NCSNIEFKSVVSLIKG 614
Query: 330 MSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIE 389
M G A ++ F+++ LG ++ P +I
Sbjct: 615 FCMKGMMTEA----------------DQVFESM-LG---------KNHKPDGTAYNIMIH 648
Query: 390 IFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVK-AKINDPN 435
GD+ A L++E+ K+ + +T L+KA K K+N+ N
Sbjct: 649 GHCRAGDIRKAYTLYKEMVKSGFLLHTVTVIALVKALHKEGKVNELN 695
>sp|Q0WPZ6|PP158_ARATH Pentatricopeptide repeat-containing protein At2g17140
OS=Arabidopsis thaliana GN=At2g17140 PE=2 SV=1
Length = 874
Score = 74.7 bits (182), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 97/475 (20%), Positives = 199/475 (41%), Gaps = 47/475 (9%)
Query: 18 MREGFPVHRGEIFHSINRLRKLQLNKRALEVMEWVIRER---PYRPKELDYSYLLEFTIK 74
+R FP ++ ++ N L + + +R +E + W+ ++ P+ ++ L+
Sbjct: 101 VRSRFPENKPSVYL-YNLLLESCIKERRVEFVSWLYKDMVLCGIAPQTYTFNLLIRALCD 159
Query: 75 NHGISQGEKLFCCIPKD--YQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLV 132
+ + +LF +P+ NE + LV G+ LE + M G + ++
Sbjct: 160 SSCVDAARELFDEMPEKGCKPNEFTFGILVRGYCKAGLTDKGLELLNAMESFGVLPNKVI 219
Query: 133 FNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMK 192
+N ++ GR ++ +M+ + + P + TF+ + + + +++SDM+
Sbjct: 220 YNTIVSSFCREGRNDDSEKMVEKMREEGLVPDIVTFNSRISALCKEGKVLDASRIFSDME 279
Query: 193 RSEV----EPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVL-IILYGY 247
E PN ++Y ++ L A+T E++ ++ ++ ++L I L G
Sbjct: 280 LDEYLGLPRPNSITYNLMLKGFCKVGLLEDAKTLFESIREN---DDLASLQSYNIWLQGL 336
Query: 248 LAKGKDLERIWATVQEL-----PNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLK 302
+ GK +E Q P++ S Y + ++ ++ +S A+ + M+
Sbjct: 337 VRHGKFIEAETVLKQMTDKGIGPSIYS--YNILMDGLCKLGMLSDAKTIVGLMKRNGVCP 394
Query: 303 ATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKAL 362
Y ++ YC G +D A LL+EM N C PNA T L +K + E + L
Sbjct: 395 DAVTYGCLLHGYCSVGKVDAAKSLLQEMMRNNCLPNAYTCNILLHSLWKMGRISEAEELL 454
Query: 363 E------LGMKLITTKKVRS---STPWLETTLSIIEIF-----AEKGDVGNA------EN 402
G+ +T + + L+ + I++ A G++GN+ ++
Sbjct: 455 RKMNEKGYGLDTVTCNIIVDGLCGSGELDKAIEIVKGMRVHGSAALGNLGNSYIGLVDDS 514
Query: 403 LFEELKKANYTKYTFVYNTLIKA--YVKAKINDPNLLRRMILGGARPDAETYSLL 455
L E + Y+ + N L KA + +AK NL M+ +PD+ Y++
Sbjct: 515 LIENNCLPDLITYSTLLNGLCKAGRFAEAK----NLFAEMMGEKLQPDSVAYNIF 565
Score = 62.4 bits (150), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 91/403 (22%), Positives = 158/403 (39%), Gaps = 47/403 (11%)
Query: 59 RPKELDYSYLLEFTIKNHGISQGEKLFCCIPK--DYQNELLYNNLVIACLDKGVIKLSLE 116
RP + Y+ +L+ K + + LF I + D + YN + + G +
Sbjct: 288 RPNSITYNLMLKGFCKVGLLEDAKTLFESIRENDDLASLQSYNIWLQGLVRHGKFIEAET 347
Query: 117 YMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEA 176
+K+M G S +N L+ G I+ MK + V P T+ L+
Sbjct: 348 VLKQMTDKGIGPSIYSYNILMDGLCKLGMLSDAKTIVGLMKRNGVCPDAVTYGCLLHGYC 407
Query: 177 NDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMT--GNN 234
+ ++ + +M R+ PN + IL H++ ++ ++E E L + M G
Sbjct: 408 SVGKVDAAKSLLQEMMRNNCLPNAYTCNILL--HSLWKMGRISEA--EELLRKMNEKGYG 463
Query: 235 WSTLDVLIILYGYLAKGKDLERIWATVQE-----------------------------LP 265
T+ II+ G G +L++ V+ LP
Sbjct: 464 LDTVTCNIIVDGLCGSG-ELDKAIEIVKGMRVHGSAALGNLGNSYIGLVDDSLIENNCLP 522
Query: 266 NVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASG 325
++ + S +L + + + A+ L+ EM K + YN I +CK G I A
Sbjct: 523 DLITYSTLL--NGLCKAGRFAEAKNLFAEMMGEKLQPDSVAYNIFIHHFCKQGKISSAFR 580
Query: 326 LLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTL 385
+LK+M GC + TY L LG N + E L+ K + +P + T
Sbjct: 581 VLKDMEKKGCHKSLETYNSLILGLGIKNQIFEIH-------GLMDEMKEKGISPNICTYN 633
Query: 386 SIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVK 428
+ I+ E V +A NL +E+ + N F + LI+A+ K
Sbjct: 634 TAIQYLCEGEKVEDATNLLDEMMQKNIAPNVFSFKYLIEAFCK 676
Score = 55.8 bits (133), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 65/284 (22%), Positives = 121/284 (42%), Gaps = 30/284 (10%)
Query: 192 KRSEVEPNEVSYCI-LATAHAVARLYTVAETYVEA-------LEKSMTGNNWSTLDVLII 243
KR P+E S+ I L +AR+ A+ + E L S+ S+L ++
Sbjct: 24 KRIFSSPSEESHGISLDATPTIARILVRAKMHEEIQELHNLILSSSIQKTKLSSLLSVVS 83
Query: 244 LYGYLAKGKDLERIWATVQ----ELPNVRSKSYV--LAIEAFGRIAQVSRAEELWLEMQS 297
++ AK +++ + Q P + Y+ L +E+ + +V L+ +M
Sbjct: 84 IF---AKSNHIDKAFPQFQLVRSRFPENKPSVYLYNLLLESCIKERRVEFVSWLYKDMVL 140
Query: 298 VKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEE 357
T +N +I C + +D A L EM GCKPN T+ L G K+ L ++
Sbjct: 141 CGIAPQTYTFNLLIRALCDSSCVDAARELFDEMPEKGCKPNEFTFGILVRGYCKAGLTDK 200
Query: 358 GFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTF 417
G++L+ + P +I+ F +G ++E + E++++
Sbjct: 201 -------GLELLNAMESFGVLPNKVIYNTIVSSFCREGRNDDSEKMVEKMREEGLVPDIV 253
Query: 418 VYNTLIKAYVK-AKINDPNLLRRMI-----LGGARPDAETYSLL 455
+N+ I A K K+ D + + + LG RP++ TY+L+
Sbjct: 254 TFNSRISALCKEGKVLDASRIFSDMELDEYLGLPRPNSITYNLM 297
Score = 45.8 bits (107), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 57/228 (25%), Positives = 98/228 (42%), Gaps = 23/228 (10%)
Query: 210 HAVARLYTVAETYVEALEKSMTGNN-------WSTLDVLIILYGYLAKGKDL--ERIWAT 260
H A L + +Y+ ++ S+ NN +STL + G A+ K+L E +
Sbjct: 495 HGSAALGNLGNSYIGLVDDSLIENNCLPDLITYSTLLNGLCKAGRFAEAKNLFAEMMGEK 554
Query: 261 VQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFI 320
+Q P+ S +Y + I F + ++S A + +M+ K+ E YNS+I I
Sbjct: 555 LQ--PD--SVAYNIFIHHFCKQGKISSAFRVLKDMEKKGCHKSLETYNSLILGLGIKNQI 610
Query: 321 DKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPW 380
+ GL+ EM G PN TY + VE+ L+ M+ ++ P
Sbjct: 611 FEIHGLMDEMKEKGISPNICTYNTAIQYLCEGEKVEDATNLLDEMMQ-------KNIAPN 663
Query: 381 LETTLSIIEIFAEKGDVGNAENLFEELKKANYTK---YTFVYNTLIKA 425
+ + +IE F + D A+ +FE K Y+ ++N L+ A
Sbjct: 664 VFSFKYLIEAFCKVPDFDMAQEVFETAVSICGQKEGLYSLMFNELLAA 711
Score = 39.7 bits (91), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 68/306 (22%), Positives = 118/306 (38%), Gaps = 71/306 (23%)
Query: 90 KDYQNELLYNNLVIACL-DKGVIKLSLEYMKKMRV--------LGHSISYLVFNRLIILN 140
K Y + + N+++ L G + ++E +K MRV LG+S LV + LI N
Sbjct: 460 KGYGLDTVTCNIIVDGLCGSGELDKAIEIVKGMRVHGSAALGNLGNSYIGLVDDSLIENN 519
Query: 141 SSP---------------GRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLM 185
P GR N+ +M +K+ P ++I + I
Sbjct: 520 CLPDLITYSTLLNGLCKAGRFAEAKNLFAEMMGEKLQPDSVAYNIFIHHFCKQGKISSAF 579
Query: 186 KVYSDMKRSEVEPNEVSYCILATAHAVA-RLYTVAETYVEALEKSMTGNNWSTLDVLIIL 244
+V DM++ + +Y L + +++ + E EK ++ N T + I
Sbjct: 580 RVLKDMEKKGCHKSLETYNSLILGLGIKNQIFEIHGLMDEMKEKGIS-PNICTYNTAI-- 636
Query: 245 YGYLAKGKDLERIWATVQEL------PNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSV 298
YL +G+ +E + E+ PNV S Y+ IEAF ++ A+E++ S+
Sbjct: 637 -QYLCEGEKVEDATNLLDEMMQKNIAPNVFSFKYL--IEAFCKVPDFDMAQEVFETAVSI 693
Query: 299 -------------------KQLKATEQ---------------YNSVISVYCKNGFIDKAS 324
+ LKATE Y ++ CK ++ AS
Sbjct: 694 CGQKEGLYSLMFNELLAAGQLLKATELLEAVLDRGFELGTFLYKDLVESLCKKDELEVAS 753
Query: 325 GLLKEM 330
G+L +M
Sbjct: 754 GILHKM 759
Score = 37.7 bits (86), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 34/168 (20%), Positives = 68/168 (40%), Gaps = 2/168 (1%)
Query: 60 PKELDYSYLLEFTIKNHGISQGEKLFCCI--PKDYQNELLYNNLVIACLDKGVIKLSLEY 117
P + YS LL K ++ + LF + K + + YN + +G I +
Sbjct: 522 PDLITYSTLLNGLCKAGRFAEAKNLFAEMMGEKLQPDSVAYNIFIHHFCKQGKISSAFRV 581
Query: 118 MKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEAN 177
+K M G S +N LI+ + I ++ +MK ++P++ T++ ++
Sbjct: 582 LKDMEKKGCHKSLETYNSLILGLGIKNQIFEIHGLMDEMKEKGISPNICTYNTAIQYLCE 641
Query: 178 DHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEA 225
+E + +M + + PN S+ L A + +A+ E
Sbjct: 642 GEKVEDATNLLDEMMQKNIAPNVFSFKYLIEAFCKVPDFDMAQEVFET 689
>sp|Q9T0D6|PP306_ARATH Pentatricopeptide repeat-containing protein At4g11690
OS=Arabidopsis thaliana GN=At4g11690 PE=2 SV=1
Length = 566
Score = 73.9 bits (180), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 85/387 (21%), Positives = 171/387 (44%), Gaps = 31/387 (8%)
Query: 55 ERPYRPKELDYSYLLEFTIKNHGISQGEKLFCCIPKDYQNELL-----YNNLVIACLDKG 109
+ + P ++YLL F + + +Q F + +++++ + L+ C + G
Sbjct: 122 DNGFVPGSNCFNYLLTFVVGSSSFNQWWSFF----NENKSKVVLDVYSFGILIKGCCEAG 177
Query: 110 VIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFH 169
I+ S + + ++ G S + +++ LI G + ++ +M + + T+
Sbjct: 178 EIEKSFDLLIELTEFGFSPNVVIYTTLIDGCCKKGEIEKAKDLFFEMGKLGLVANERTYT 237
Query: 170 ILMK-IEANDHNIEGLMKVYSDMKRSEVEPNEVSY-CILATAHAVARLYTVAETYVEALE 227
+L+ + N +G ++Y M+ V PN +Y C++ R + + E E
Sbjct: 238 VLINGLFKNGVKKQGF-EMYEKMQEDGVFPNLYTYNCVMNQLCKDGRTKDAFQVFDEMRE 296
Query: 228 KSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQEL------PNVRSKSYVLAIEAFGR 281
+ ++ N T + LI G L + L V ++ PN+ + Y I+ F
Sbjct: 297 RGVSCN-IVTYNTLI---GGLCREMKLNEANKVVDQMKSDGINPNLIT--YNTLIDGFCG 350
Query: 282 IAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAIT 341
+ ++ +A L +++S + YN ++S +C+ G A+ ++KEM G KP+ +T
Sbjct: 351 VGKLGKALSLCRDLKSRGLSPSLVTYNILVSGFCRKGDTSGAAKMVKEMEERGIKPSKVT 410
Query: 342 YRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAE 401
Y L +S+ +E KA++L + + V P + T +I F KG + A
Sbjct: 411 YTILIDTFARSDNME---KAIQLRLSMEELGLV----PDVHTYSVLIHGFCIKGQMNEAS 463
Query: 402 NLFEELKKANYTKYTFVYNTLIKAYVK 428
LF+ + + N +YNT+I Y K
Sbjct: 464 RLFKSMVEKNCEPNEVIYNTMILGYCK 490
Score = 66.6 bits (161), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 72/293 (24%), Positives = 134/293 (45%), Gaps = 15/293 (5%)
Query: 62 ELDYSYLLEFTIKNHGISQGEKLFCCIPKD--YQNELLYNNLVIACLDKGVIKLSLEYMK 119
E Y+ L+ KN QG +++ + +D + N YN ++ G K + +
Sbjct: 233 ERTYTVLINGLFKNGVKKQGFEMYEKMQEDGVFPNLYTYNCVMNQLCKDGRTKDAFQVFD 292
Query: 120 KMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDH 179
+MR G S + + +N LI + ++ QMK+D + P++ T++ L+
Sbjct: 293 EMRERGVSCNIVTYNTLIGGLCREMKLNEANKVVDQMKSDGINPNLITYNTLIDGFCGVG 352
Query: 180 NIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLD 239
+ + + D+K + P+ V+Y IL + + A V+ +E+ + T
Sbjct: 353 KLGKALSLCRDLKSRGLSPSLVTYNILVSGFCRKGDTSGAAKMVKEMEERGIKPSKVTYT 412
Query: 240 VLIILYGYLAKGKDLER---IWATVQEL---PNVRSKSYVLAIEAFGRIAQVSRAEELWL 293
+LI + A+ ++E+ + +++EL P+V + Y + I F Q++ A L+
Sbjct: 413 ILIDTF---ARSDNMEKAIQLRLSMEELGLVPDVHT--YSVLIHGFCIKGQMNEASRLFK 467
Query: 294 EMQSVKQLKATEQ-YNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHL 345
M K + E YN++I YCK G +A LLKEM PN +YR++
Sbjct: 468 SMVE-KNCEPNEVIYNTMILGYCKEGSSYRALKLLKEMEEKELAPNVASYRYM 519
Score = 45.1 bits (105), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 54/250 (21%), Positives = 112/250 (44%), Gaps = 7/250 (2%)
Query: 94 NELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNIL 153
N + YN L+ + + + + + +M+ G + + + +N LI G+ ++
Sbjct: 302 NIVTYNTLIGGLCREMKLNEANKVVDQMKSDGINPNLITYNTLIDGFCGVGKLGKALSLC 361
Query: 154 RQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVA 213
R +K+ ++P + T++IL+ + G K+ +M+ ++P++V+Y IL A +
Sbjct: 362 RDLKSRGLSPSLVTYNILVSGFCRKGDTSGAAKMVKEMEERGIKPSKVTYTILIDTFARS 421
Query: 214 RLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGK--DLERIWATVQELPNVRSKS 271
A ++E+ + T VLI +G+ KG+ + R++ ++ E N
Sbjct: 422 DNMEKAIQLRLSMEELGLVPDVHTYSVLI--HGFCIKGQMNEASRLFKSMVE-KNCEPNE 478
Query: 272 YVLAIEAFGRIAQVS--RAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKE 329
+ G + S RA +L EM+ + Y +I V CK +A L+++
Sbjct: 479 VIYNTMILGYCKEGSSYRALKLLKEMEEKELAPNVASYRYMIEVLCKERKSKEAERLVEK 538
Query: 330 MSMNGCKPNA 339
M +G P+
Sbjct: 539 MIDSGIDPST 548
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.135 0.392
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 165,724,597
Number of Sequences: 539616
Number of extensions: 6644568
Number of successful extensions: 21178
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 313
Number of HSP's successfully gapped in prelim test: 118
Number of HSP's that attempted gapping in prelim test: 16972
Number of HSP's gapped (non-prelim): 1972
length of query: 464
length of database: 191,569,459
effective HSP length: 121
effective length of query: 343
effective length of database: 126,275,923
effective search space: 43312641589
effective search space used: 43312641589
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 63 (28.9 bits)