Query 044770
Match_columns 464
No_of_seqs 649 out of 1764
Neff 11.7
Searched_HMMs 46136
Date Fri Mar 29 06:36:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044770.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/044770hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03218 maturation of RBCL 1; 100.0 2.3E-68 5E-73 523.3 52.8 430 22-460 366-800 (1060)
2 PLN03218 maturation of RBCL 1; 100.0 1.1E-68 2.3E-73 525.6 49.4 442 6-459 385-857 (1060)
3 PLN03077 Protein ECB2; Provisi 100.0 1.5E-65 3.2E-70 512.6 42.1 435 6-459 167-635 (857)
4 PLN03081 pentatricopeptide (PP 100.0 2E-64 4.3E-69 493.0 44.1 434 7-462 103-541 (697)
5 PLN03077 Protein ECB2; Provisi 100.0 3.7E-63 8E-68 495.4 42.6 432 6-460 66-500 (857)
6 PLN03081 pentatricopeptide (PP 100.0 1.9E-60 4.1E-65 465.0 40.0 416 8-447 140-561 (697)
7 TIGR02917 PEP_TPR_lipo putativ 100.0 1.4E-26 3E-31 237.3 48.4 415 24-458 463-880 (899)
8 TIGR02917 PEP_TPR_lipo putativ 100.0 3.1E-26 6.7E-31 234.7 48.5 390 35-442 440-831 (899)
9 PRK11788 tetratricopeptide rep 99.9 1.4E-22 3.1E-27 186.5 32.1 299 105-416 45-353 (389)
10 PRK11788 tetratricopeptide rep 99.9 2.2E-22 4.7E-27 185.3 32.0 300 137-450 42-354 (389)
11 TIGR00990 3a0801s09 mitochondr 99.9 6.3E-19 1.4E-23 170.8 44.9 399 29-443 130-571 (615)
12 PRK15174 Vi polysaccharide exp 99.9 2.9E-19 6.4E-24 172.5 41.9 371 26-408 42-418 (656)
13 KOG4626 O-linked N-acetylgluco 99.9 1.6E-19 3.5E-24 159.8 35.0 401 27-449 49-489 (966)
14 KOG4626 O-linked N-acetylgluco 99.9 1.5E-20 3.3E-25 166.2 28.2 382 22-426 112-500 (966)
15 PRK15174 Vi polysaccharide exp 99.9 2.5E-19 5.3E-24 173.0 38.8 377 36-428 15-399 (656)
16 PRK11447 cellulose synthase su 99.9 5.3E-19 1.1E-23 182.3 42.8 393 33-446 276-744 (1157)
17 PRK11447 cellulose synthase su 99.9 3.5E-18 7.7E-23 176.3 43.2 399 9-423 287-758 (1157)
18 PRK10049 pgaA outer membrane p 99.9 1.7E-17 3.7E-22 163.7 44.7 420 19-458 8-469 (765)
19 KOG4422 Uncharacterized conser 99.9 1.9E-17 4.1E-22 140.5 37.2 346 94-445 206-592 (625)
20 TIGR00990 3a0801s09 mitochondr 99.9 5.5E-17 1.2E-21 157.3 40.9 385 10-411 146-572 (615)
21 PRK10049 pgaA outer membrane p 99.8 3.9E-17 8.4E-22 161.2 37.7 384 23-426 46-470 (765)
22 PRK14574 hmsH outer membrane p 99.8 3.6E-15 7.9E-20 144.8 45.1 411 22-452 30-520 (822)
23 PRK09782 bacteriophage N4 rece 99.8 1.7E-13 3.8E-18 136.0 45.5 409 10-443 166-706 (987)
24 KOG2003 TPR repeat-containing 99.8 2.6E-15 5.6E-20 128.8 27.4 421 24-460 199-705 (840)
25 PRK14574 hmsH outer membrane p 99.8 1E-13 2.2E-18 134.9 41.9 371 30-417 72-518 (822)
26 KOG4422 Uncharacterized conser 99.8 1.2E-13 2.6E-18 117.8 36.5 358 60-426 205-606 (625)
27 KOG2002 TPR-containing nuclear 99.7 6.6E-14 1.4E-18 131.0 36.2 408 24-442 268-744 (1018)
28 KOG2002 TPR-containing nuclear 99.7 8.5E-14 1.8E-18 130.3 33.5 404 28-446 309-801 (1018)
29 PRK09782 bacteriophage N4 rece 99.7 1E-13 2.2E-18 137.6 35.5 332 23-365 373-737 (987)
30 PRK10747 putative protoheme IX 99.7 1.5E-13 3.3E-18 125.4 31.5 283 75-367 97-389 (398)
31 KOG0495 HAT repeat protein [RN 99.7 6E-12 1.3E-16 113.2 39.8 407 15-443 468-880 (913)
32 PF13429 TPR_15: Tetratricopep 99.7 3.4E-16 7.3E-21 136.6 12.7 257 68-365 14-274 (280)
33 PRK10747 putative protoheme IX 99.7 1.9E-13 4.2E-18 124.7 31.0 284 108-409 97-389 (398)
34 KOG2076 RNA polymerase III tra 99.7 1.5E-12 3.3E-17 121.2 36.0 377 27-409 140-554 (895)
35 PF13429 TPR_15: Tetratricopep 99.7 6.7E-16 1.4E-20 134.8 12.2 261 30-296 12-275 (280)
36 COG3071 HemY Uncharacterized e 99.7 1.6E-12 3.4E-17 110.4 30.2 292 108-415 97-395 (400)
37 COG2956 Predicted N-acetylgluc 99.7 6.5E-13 1.4E-17 109.3 26.8 220 108-332 48-277 (389)
38 TIGR00540 hemY_coli hemY prote 99.7 7.9E-13 1.7E-17 121.4 31.1 290 73-367 95-398 (409)
39 KOG1155 Anaphase-promoting com 99.6 6.6E-11 1.4E-15 102.4 38.4 386 25-428 163-552 (559)
40 TIGR00540 hemY_coli hemY prote 99.6 2.2E-12 4.7E-17 118.5 32.1 287 106-408 95-397 (409)
41 KOG2003 TPR repeat-containing 99.6 4.1E-13 8.8E-18 115.5 24.8 386 33-431 244-709 (840)
42 KOG2076 RNA polymerase III tra 99.6 1E-11 2.2E-16 115.9 34.4 351 71-431 148-541 (895)
43 KOG0547 Translocase of outer m 99.6 8.1E-11 1.8E-15 102.5 34.6 375 31-428 120-579 (606)
44 KOG1126 DNA-binding cell divis 99.6 3.7E-13 8.1E-18 121.3 20.7 287 38-338 331-625 (638)
45 KOG1915 Cell cycle control pro 99.6 1.1E-10 2.4E-15 101.3 34.4 382 25-424 106-548 (677)
46 COG2956 Predicted N-acetylgluc 99.6 1.5E-11 3.3E-16 101.4 27.7 286 142-444 47-348 (389)
47 COG3071 HemY Uncharacterized e 99.6 6.1E-11 1.3E-15 100.9 30.3 284 75-366 97-388 (400)
48 KOG1915 Cell cycle control pro 99.6 7.9E-10 1.7E-14 96.2 37.2 386 38-443 85-536 (677)
49 KOG1126 DNA-binding cell divis 99.5 2E-12 4.4E-17 116.7 22.3 283 77-370 334-622 (638)
50 KOG1155 Anaphase-promoting com 99.5 9.6E-10 2.1E-14 95.4 36.7 349 61-432 163-523 (559)
51 KOG0495 HAT repeat protein [RN 99.5 1.4E-09 3.1E-14 98.3 38.1 378 10-410 498-880 (913)
52 KOG1173 Anaphase-promoting com 99.5 1.6E-09 3.5E-14 96.3 37.8 424 21-457 44-530 (611)
53 KOG4318 Bicoid mRNA stability 99.5 1.2E-10 2.7E-15 108.4 29.6 413 12-445 11-596 (1088)
54 PF13041 PPR_2: PPR repeat fam 99.5 1.3E-13 2.8E-18 84.5 6.2 50 379-428 1-50 (50)
55 KOG4318 Bicoid mRNA stability 99.5 1E-11 2.2E-16 115.5 21.0 254 117-396 12-286 (1088)
56 KOG1129 TPR repeat-containing 99.5 9.5E-12 2.1E-16 102.7 18.4 237 166-416 224-462 (478)
57 PRK12370 invasion protein regu 99.5 3.5E-11 7.5E-16 114.9 24.6 213 78-296 277-500 (553)
58 KOG1129 TPR repeat-containing 99.4 1.6E-11 3.4E-16 101.5 18.0 231 66-332 227-457 (478)
59 KOG0547 Translocase of outer m 99.4 9.8E-10 2.1E-14 96.0 29.7 368 66-441 119-564 (606)
60 PF13041 PPR_2: PPR repeat fam 99.4 3.4E-13 7.3E-18 82.7 5.9 50 163-212 1-50 (50)
61 KOG1173 Anaphase-promoting com 99.4 2.9E-09 6.3E-14 94.8 31.6 286 129-428 243-534 (611)
62 KOG1156 N-terminal acetyltrans 99.4 3.3E-08 7.2E-13 89.7 38.4 405 23-445 4-470 (700)
63 PRK12370 invasion protein regu 99.4 1.2E-10 2.7E-15 111.2 24.2 215 40-263 275-501 (553)
64 TIGR02521 type_IV_pilW type IV 99.4 1.6E-10 3.6E-15 98.3 22.5 96 95-192 31-126 (234)
65 KOG2047 mRNA splicing factor [ 99.4 6.6E-08 1.4E-12 87.7 38.6 406 26-448 102-583 (835)
66 TIGR02521 type_IV_pilW type IV 99.4 2.2E-10 4.8E-15 97.5 22.7 197 132-331 33-230 (234)
67 PF12569 NARP1: NMDA receptor- 99.4 2.4E-09 5.3E-14 99.0 28.3 288 105-408 14-332 (517)
68 PF12569 NARP1: NMDA receptor- 99.3 5.1E-09 1.1E-13 96.9 29.8 296 29-332 7-333 (517)
69 KOG3785 Uncharacterized conser 99.3 2.1E-08 4.6E-13 84.3 29.2 391 32-452 63-497 (557)
70 KOG1840 Kinesin light chain [C 99.3 5.7E-09 1.2E-13 95.4 27.6 256 200-455 199-497 (508)
71 KOG1840 Kinesin light chain [C 99.3 1.6E-09 3.6E-14 98.9 23.6 243 165-408 199-477 (508)
72 KOG3785 Uncharacterized conser 99.3 2.6E-07 5.6E-12 77.9 32.3 379 33-440 29-454 (557)
73 KOG1174 Anaphase-promoting com 99.3 3.7E-08 8E-13 84.6 27.7 311 21-339 189-504 (564)
74 KOG2047 mRNA splicing factor [ 99.2 2E-06 4.2E-11 78.5 40.6 340 97-453 250-659 (835)
75 KOG2376 Signal recognition par 99.2 2.2E-06 4.7E-11 77.4 37.5 162 271-436 341-513 (652)
76 KOG4162 Predicted calmodulin-b 99.2 9.8E-07 2.1E-11 82.1 34.5 406 16-443 313-783 (799)
77 COG3063 PilF Tfp pilus assembl 99.2 5E-08 1.1E-12 77.3 22.0 199 96-297 36-235 (250)
78 KOG4340 Uncharacterized conser 99.1 6.3E-08 1.4E-12 79.6 22.9 329 20-365 4-336 (459)
79 PRK11189 lipoprotein NlpI; Pro 99.1 2.9E-08 6.3E-13 86.9 22.9 128 96-227 65-192 (296)
80 PRK11189 lipoprotein NlpI; Pro 99.1 2E-08 4.4E-13 88.0 21.2 154 37-193 37-193 (296)
81 COG3063 PilF Tfp pilus assembl 99.1 8E-08 1.7E-12 76.2 21.6 196 29-228 38-235 (250)
82 cd05804 StaR_like StaR_like; a 99.1 6.8E-07 1.5E-11 81.4 31.2 311 64-410 8-336 (355)
83 KOG1174 Anaphase-promoting com 99.1 4.4E-06 9.6E-11 72.2 38.9 394 32-442 49-499 (564)
84 cd05804 StaR_like StaR_like; a 99.1 4.1E-07 8.9E-12 82.8 29.6 197 29-229 9-215 (355)
85 PRK04841 transcriptional regul 99.1 2.1E-06 4.5E-11 88.5 36.2 338 71-411 383-761 (903)
86 KOG2376 Signal recognition par 99.0 5.9E-06 1.3E-10 74.7 32.6 411 27-460 13-503 (652)
87 PF04733 Coatomer_E: Coatomer 99.0 4.3E-08 9.4E-13 84.6 17.3 247 74-365 13-262 (290)
88 PF04733 Coatomer_E: Coatomer 99.0 3.3E-08 7.2E-13 85.3 15.7 250 34-297 9-264 (290)
89 KOG4162 Predicted calmodulin-b 98.9 1.9E-05 4.2E-10 73.8 32.6 372 57-444 318-750 (799)
90 KOG1156 N-terminal acetyltrans 98.9 4E-05 8.8E-10 70.3 36.1 102 301-412 366-470 (700)
91 KOG0985 Vesicle coat protein c 98.9 1.2E-05 2.6E-10 77.2 31.7 333 12-406 968-1304(1666)
92 PRK04841 transcriptional regul 98.9 1.5E-05 3.2E-10 82.3 35.2 333 104-443 383-760 (903)
93 KOG1070 rRNA processing protei 98.9 1.3E-06 2.7E-11 86.4 24.2 233 94-365 1457-1697(1710)
94 KOG0624 dsRNA-activated protei 98.9 9E-06 2E-10 68.6 25.8 310 25-366 37-368 (504)
95 PF12854 PPR_1: PPR repeat 98.9 3.8E-09 8.2E-14 57.9 3.8 33 376-408 2-34 (34)
96 PF12854 PPR_1: PPR repeat 98.8 3.8E-09 8.3E-14 57.9 3.6 32 160-191 2-33 (34)
97 KOG1070 rRNA processing protei 98.8 3E-06 6.5E-11 83.9 25.3 222 199-432 1457-1687(1710)
98 KOG0548 Molecular co-chaperone 98.8 8.2E-05 1.8E-09 66.9 32.5 378 34-428 10-471 (539)
99 KOG1125 TPR repeat-containing 98.8 7.6E-07 1.7E-11 80.1 18.6 256 140-402 295-563 (579)
100 KOG0624 dsRNA-activated protei 98.8 2.5E-05 5.4E-10 66.0 25.5 296 101-411 44-371 (504)
101 KOG4340 Uncharacterized conser 98.7 4.6E-06 9.9E-11 69.0 19.7 281 133-430 13-324 (459)
102 KOG1914 mRNA cleavage and poly 98.7 0.00017 3.7E-09 65.0 32.7 148 305-461 367-522 (656)
103 KOG0985 Vesicle coat protein c 98.7 0.00025 5.4E-09 68.7 33.1 373 9-404 661-1189(1666)
104 KOG1125 TPR repeat-containing 98.7 3.8E-06 8.3E-11 75.8 20.2 250 104-359 294-562 (579)
105 KOG3617 WD40 and TPR repeat-co 98.7 0.00015 3.2E-09 68.7 30.3 366 36-461 738-1154(1416)
106 PLN02789 farnesyltranstransfer 98.7 1.4E-05 3E-10 70.2 22.9 201 76-280 51-266 (320)
107 KOG1128 Uncharacterized conser 98.7 9.6E-06 2.1E-10 75.3 21.7 221 59-297 395-615 (777)
108 KOG3616 Selective LIM binding 98.7 5E-05 1.1E-09 70.8 26.2 107 209-327 741-847 (1636)
109 TIGR03302 OM_YfiO outer membra 98.6 6.2E-06 1.3E-10 70.1 19.0 186 199-410 32-232 (235)
110 KOG1128 Uncharacterized conser 98.6 3.5E-06 7.6E-11 78.1 17.8 215 134-368 402-616 (777)
111 PLN02789 farnesyltranstransfer 98.6 4.7E-05 1E-09 66.9 24.0 215 97-316 39-267 (320)
112 COG5010 TadD Flp pilus assembl 98.6 1.3E-05 2.8E-10 65.4 18.6 159 239-408 70-229 (257)
113 COG5010 TadD Flp pilus assembl 98.6 1.5E-05 3.3E-10 65.0 18.7 160 134-296 70-229 (257)
114 KOG3616 Selective LIM binding 98.6 6.4E-05 1.4E-09 70.1 24.7 326 20-404 583-931 (1636)
115 TIGR03302 OM_YfiO outer membra 98.6 1E-05 2.2E-10 68.8 18.9 64 130-194 33-99 (235)
116 COG4783 Putative Zn-dependent 98.6 6.4E-05 1.4E-09 66.9 22.8 109 142-254 318-427 (484)
117 KOG3617 WD40 and TPR repeat-co 98.6 0.00085 1.8E-08 63.8 34.6 171 31-227 805-994 (1416)
118 PRK14720 transcript cleavage f 98.5 3.3E-05 7.2E-10 75.8 22.5 129 24-158 29-177 (906)
119 COG4783 Putative Zn-dependent 98.5 0.00013 2.9E-09 65.0 23.8 147 244-419 315-462 (484)
120 KOG3081 Vesicle coat complex C 98.5 9.7E-05 2.1E-09 60.4 20.7 147 209-365 117-268 (299)
121 PRK10370 formate-dependent nit 98.5 1.6E-05 3.6E-10 64.8 16.6 118 109-229 53-173 (198)
122 PRK14720 transcript cleavage f 98.5 0.00016 3.4E-09 71.3 25.3 221 61-332 30-251 (906)
123 PRK15179 Vi polysaccharide bio 98.5 4.5E-05 9.7E-10 74.0 21.2 177 94-281 85-267 (694)
124 KOG0548 Molecular co-chaperone 98.5 0.00098 2.1E-08 60.2 27.6 334 25-366 35-453 (539)
125 KOG1914 mRNA cleavage and poly 98.5 0.0011 2.4E-08 60.0 35.6 376 21-409 15-500 (656)
126 PRK15179 Vi polysaccharide bio 98.4 0.00014 3E-09 70.8 24.0 183 160-352 81-268 (694)
127 KOG3081 Vesicle coat complex C 98.4 0.00021 4.6E-09 58.5 21.1 237 32-284 14-256 (299)
128 PRK15359 type III secretion sy 98.4 8.2E-06 1.8E-10 62.9 12.8 98 25-124 23-121 (144)
129 KOG3060 Uncharacterized conser 98.4 0.00035 7.5E-09 56.9 21.9 185 178-366 25-218 (289)
130 PRK10370 formate-dependent nit 98.4 6.2E-05 1.3E-09 61.4 18.3 99 234-333 72-173 (198)
131 PRK15359 type III secretion sy 98.4 1.4E-05 2.9E-10 61.7 12.5 92 240-332 29-120 (144)
132 TIGR00756 PPR pentatricopeptid 98.4 8.7E-07 1.9E-11 49.4 4.3 33 306-338 2-34 (35)
133 TIGR00756 PPR pentatricopeptid 98.3 8.7E-07 1.9E-11 49.5 4.1 34 383-416 2-35 (35)
134 KOG1127 TPR repeat-containing 98.3 0.0012 2.5E-08 64.2 26.7 55 63-117 493-548 (1238)
135 KOG3060 Uncharacterized conser 98.3 0.00094 2E-08 54.4 21.2 188 213-411 25-221 (289)
136 PF13812 PPR_3: Pentatricopept 98.3 1.6E-06 3.4E-11 47.9 4.2 33 305-337 2-34 (34)
137 PF13812 PPR_3: Pentatricopept 98.3 1.9E-06 4.2E-11 47.6 4.3 33 382-414 2-34 (34)
138 KOG1127 TPR repeat-containing 98.3 0.00048 1E-08 66.8 22.4 155 269-424 850-1011(1238)
139 TIGR02552 LcrH_SycD type III s 98.2 3.9E-05 8.4E-10 58.8 12.9 87 245-332 27-113 (135)
140 TIGR02552 LcrH_SycD type III s 98.2 2.8E-05 6.1E-10 59.5 11.8 93 99-193 21-113 (135)
141 KOG2053 Mitochondrial inherita 98.2 0.0068 1.5E-07 58.5 38.6 73 384-458 439-517 (932)
142 PF09976 TPR_21: Tetratricopep 98.2 0.0002 4.4E-09 55.4 15.5 125 272-407 15-144 (145)
143 PF10037 MRP-S27: Mitochondria 98.2 6.6E-05 1.4E-09 67.7 14.0 124 125-248 61-186 (429)
144 KOG2053 Mitochondrial inherita 98.1 0.0097 2.1E-07 57.5 35.4 200 29-231 44-257 (932)
145 PF09295 ChAPs: ChAPs (Chs5p-A 98.1 7.9E-05 1.7E-09 66.8 13.7 126 95-227 169-295 (395)
146 PF08579 RPM2: Mitochondrial r 98.1 4.7E-05 1E-09 53.5 9.1 78 274-351 30-116 (120)
147 PF10037 MRP-S27: Mitochondria 98.1 6.5E-05 1.4E-09 67.7 12.3 122 231-352 62-186 (429)
148 PF08579 RPM2: Mitochondrial r 98.1 3.8E-05 8.2E-10 53.9 8.1 41 101-141 31-72 (120)
149 PF09295 ChAPs: ChAPs (Chs5p-A 98.0 0.00016 3.6E-09 64.9 13.7 123 169-296 173-295 (395)
150 PF01535 PPR: PPR repeat; Int 98.0 9.2E-06 2E-10 43.7 3.4 30 306-335 2-31 (31)
151 PF09976 TPR_21: Tetratricopep 98.0 0.00036 7.9E-09 54.0 13.6 116 248-365 24-144 (145)
152 PF01535 PPR: PPR repeat; Int 98.0 1E-05 2.2E-10 43.5 3.4 30 383-412 2-31 (31)
153 TIGR02795 tol_pal_ybgF tol-pal 97.9 0.00026 5.7E-09 52.7 11.6 99 27-125 3-106 (119)
154 PF06239 ECSIT: Evolutionarily 97.9 0.00022 4.7E-09 57.0 11.2 116 82-216 34-154 (228)
155 KOG2280 Vacuolar assembly/sort 97.9 0.011 2.5E-07 55.9 23.7 340 18-404 424-793 (829)
156 PF05843 Suf: Suppressor of fo 97.8 0.00025 5.3E-09 61.6 11.3 128 64-193 3-135 (280)
157 PF12895 Apc3: Anaphase-promot 97.8 5.5E-05 1.2E-09 52.2 5.7 82 39-120 2-83 (84)
158 PF14938 SNAP: Soluble NSF att 97.8 0.0075 1.6E-07 52.7 19.5 96 133-229 117-225 (282)
159 TIGR02795 tol_pal_ybgF tol-pal 97.7 0.0013 2.8E-08 48.9 12.7 101 306-411 4-106 (119)
160 cd00189 TPR Tetratricopeptide 97.7 0.00037 8.1E-09 49.2 9.5 89 101-191 6-94 (100)
161 PF07079 DUF1347: Protein of u 97.7 0.031 6.8E-07 50.0 33.0 50 349-407 472-521 (549)
162 cd00189 TPR Tetratricopeptide 97.7 0.00061 1.3E-08 48.1 10.2 25 307-331 37-61 (100)
163 PF05843 Suf: Suppressor of fo 97.7 0.001 2.3E-08 57.7 13.0 96 166-263 2-98 (280)
164 PF14938 SNAP: Soluble NSF att 97.7 0.018 3.8E-07 50.4 20.6 201 172-408 42-264 (282)
165 KOG0550 Molecular chaperone (D 97.7 0.023 5E-07 50.1 20.1 196 244-452 178-394 (486)
166 PF12688 TPR_5: Tetratrico pep 97.7 0.0066 1.4E-07 44.6 14.7 109 310-428 7-118 (120)
167 PF12895 Apc3: Anaphase-promot 97.7 0.00013 2.8E-09 50.3 5.5 80 282-364 2-83 (84)
168 PRK02603 photosystem I assembl 97.6 0.0026 5.6E-08 50.9 12.9 89 94-183 34-124 (172)
169 CHL00033 ycf3 photosystem I as 97.6 0.0026 5.7E-08 50.7 12.8 63 166-228 36-100 (168)
170 PF06239 ECSIT: Evolutionarily 97.6 0.00081 1.7E-08 53.8 9.3 89 337-432 45-154 (228)
171 PLN03088 SGT1, suppressor of 97.6 0.0016 3.5E-08 58.8 12.5 90 103-194 10-99 (356)
172 PLN03088 SGT1, suppressor of 97.5 0.0021 4.5E-08 58.0 13.0 90 207-297 9-98 (356)
173 PF14559 TPR_19: Tetratricopep 97.5 0.00042 9.1E-09 45.5 6.5 63 37-101 2-64 (68)
174 PRK10153 DNA-binding transcrip 97.5 0.0044 9.5E-08 58.6 15.4 134 231-366 333-480 (517)
175 PRK02603 photosystem I assembl 97.5 0.0038 8.3E-08 49.9 13.1 62 167-228 37-100 (172)
176 PRK10153 DNA-binding transcrip 97.5 0.015 3.3E-07 55.0 18.1 147 263-421 331-491 (517)
177 CHL00033 ycf3 photosystem I as 97.4 0.0051 1.1E-07 49.0 12.6 95 271-367 37-141 (168)
178 KOG1538 Uncharacterized conser 97.4 0.014 3E-07 54.4 16.3 52 272-332 750-801 (1081)
179 PRK10866 outer membrane biogen 97.4 0.064 1.4E-06 45.5 20.8 175 171-365 38-238 (243)
180 PRK15363 pathogenicity island 97.4 0.0056 1.2E-07 46.8 11.7 86 210-296 45-130 (157)
181 PF12688 TPR_5: Tetratrico pep 97.4 0.0079 1.7E-07 44.2 12.2 21 210-230 11-31 (120)
182 COG4700 Uncharacterized protei 97.4 0.04 8.6E-07 43.0 17.6 129 197-327 86-216 (251)
183 PRK15363 pathogenicity island 97.4 0.004 8.7E-08 47.5 10.6 92 66-158 39-131 (157)
184 COG4700 Uncharacterized protei 97.4 0.013 2.9E-07 45.5 13.2 156 31-191 61-219 (251)
185 KOG1258 mRNA processing protei 97.4 0.13 2.8E-06 48.0 27.1 382 32-430 51-489 (577)
186 PF13281 DUF4071: Domain of un 97.3 0.077 1.7E-06 47.4 19.5 171 238-410 144-334 (374)
187 PRK10866 outer membrane biogen 97.3 0.091 2E-06 44.6 21.9 181 203-408 35-239 (243)
188 KOG0553 TPR repeat-containing 97.3 0.0042 9.1E-08 52.2 10.4 87 210-297 91-177 (304)
189 KOG2796 Uncharacterized conser 97.2 0.036 7.7E-07 45.8 15.0 129 99-228 181-314 (366)
190 PF04840 Vps16_C: Vps16, C-ter 97.2 0.14 3E-06 45.2 26.8 107 271-404 179-285 (319)
191 PF13432 TPR_16: Tetratricopep 97.1 0.0019 4.2E-08 41.8 6.1 56 276-332 4-59 (65)
192 PF14559 TPR_19: Tetratricopep 97.1 0.0015 3.3E-08 42.7 5.7 62 281-345 3-64 (68)
193 PF13424 TPR_12: Tetratricopep 97.1 0.0019 4.1E-08 43.7 6.1 69 339-409 5-74 (78)
194 KOG0553 TPR repeat-containing 97.1 0.0058 1.3E-07 51.4 9.8 103 244-349 90-192 (304)
195 KOG1130 Predicted G-alpha GTPa 97.1 0.016 3.5E-07 51.0 12.5 136 271-408 197-342 (639)
196 COG3898 Uncharacterized membra 97.1 0.18 4E-06 44.4 29.0 283 108-411 97-393 (531)
197 PF12921 ATP13: Mitochondrial 97.1 0.009 2E-07 44.4 9.7 58 373-430 44-102 (126)
198 PF13432 TPR_16: Tetratricopep 97.1 0.0023 5.1E-08 41.4 5.9 54 70-123 5-59 (65)
199 KOG0550 Molecular chaperone (D 96.9 0.27 5.8E-06 43.8 23.2 261 31-298 54-350 (486)
200 COG4235 Cytochrome c biogenesi 96.9 0.028 6E-07 47.7 12.4 100 59-159 153-256 (287)
201 COG4235 Cytochrome c biogenesi 96.9 0.03 6.4E-07 47.5 12.4 101 127-229 153-256 (287)
202 PF03704 BTAD: Bacterial trans 96.9 0.014 3E-07 45.2 10.1 72 167-239 64-140 (146)
203 PF13525 YfiO: Outer membrane 96.9 0.19 4E-06 41.5 18.4 51 345-400 147-197 (203)
204 PRK10803 tol-pal system protei 96.9 0.027 5.8E-07 48.2 12.2 98 306-410 145-246 (263)
205 PF04840 Vps16_C: Vps16, C-ter 96.9 0.3 6.5E-06 43.2 24.1 81 240-329 182-262 (319)
206 PF13414 TPR_11: TPR repeat; P 96.8 0.0053 1.1E-07 40.3 6.1 59 306-366 5-65 (69)
207 PRK10803 tol-pal system protei 96.8 0.018 3.9E-07 49.2 10.6 95 30-124 147-246 (263)
208 PF13414 TPR_11: TPR repeat; P 96.8 0.0092 2E-07 39.1 7.2 63 165-228 3-66 (69)
209 KOG1130 Predicted G-alpha GTPa 96.8 0.01 2.2E-07 52.2 8.8 262 34-297 25-343 (639)
210 KOG2041 WD40 repeat protein [G 96.8 0.54 1.2E-05 44.8 25.0 117 59-190 689-821 (1189)
211 KOG3941 Intermediate in Toll s 96.7 0.022 4.8E-07 47.5 10.0 118 80-216 52-174 (406)
212 PF09205 DUF1955: Domain of un 96.7 0.1 2.2E-06 38.3 12.0 66 340-413 87-152 (161)
213 COG3898 Uncharacterized membra 96.6 0.49 1.1E-05 41.9 28.2 304 43-367 70-391 (531)
214 KOG1538 Uncharacterized conser 96.5 0.059 1.3E-06 50.4 12.5 86 340-443 748-846 (1081)
215 COG3118 Thioredoxin domain-con 96.5 0.39 8.6E-06 40.9 16.0 164 12-180 120-287 (304)
216 PF13424 TPR_12: Tetratricopep 96.5 0.016 3.5E-07 39.1 6.9 64 305-368 6-75 (78)
217 PF12921 ATP13: Mitochondrial 96.5 0.062 1.3E-06 40.0 10.2 53 335-393 48-100 (126)
218 PF13371 TPR_9: Tetratricopept 96.4 0.024 5.1E-07 37.6 7.4 56 277-333 3-58 (73)
219 PF13371 TPR_9: Tetratricopept 96.4 0.013 2.9E-07 38.8 6.1 22 206-227 35-56 (73)
220 PLN03098 LPA1 LOW PSII ACCUMUL 96.4 0.12 2.6E-06 46.9 13.5 64 268-333 74-141 (453)
221 PF08631 SPO22: Meiosis protei 96.4 0.57 1.2E-05 40.8 24.7 225 176-408 4-273 (278)
222 PF03704 BTAD: Bacterial trans 96.3 0.035 7.6E-07 43.0 8.8 75 306-383 64-138 (146)
223 PF07079 DUF1347: Protein of u 96.3 0.83 1.8E-05 41.4 34.7 259 35-297 15-326 (549)
224 PF13281 DUF4071: Domain of un 96.2 0.91 2E-05 40.8 20.1 173 268-450 140-340 (374)
225 PF10300 DUF3808: Protein of u 96.2 1.2 2.6E-05 42.1 22.4 249 203-461 191-465 (468)
226 PF13525 YfiO: Outer membrane 96.1 0.61 1.3E-05 38.4 20.3 167 172-358 12-197 (203)
227 PF10300 DUF3808: Protein of u 96.0 0.082 1.8E-06 49.7 11.1 161 64-228 190-375 (468)
228 KOG2796 Uncharacterized conser 96.0 0.75 1.6E-05 38.4 21.4 140 202-344 179-324 (366)
229 PRK15331 chaperone protein Sic 96.0 0.32 7E-06 37.6 11.9 85 212-297 49-133 (165)
230 PRK15331 chaperone protein Sic 95.9 0.22 4.7E-06 38.5 10.9 85 142-228 49-133 (165)
231 PLN03098 LPA1 LOW PSII ACCUMUL 95.8 0.15 3.3E-06 46.3 11.3 61 63-123 76-140 (453)
232 KOG1941 Acetylcholine receptor 95.8 1.2 2.5E-05 39.2 16.0 167 238-407 86-272 (518)
233 COG5107 RNA14 Pre-mRNA 3'-end 95.8 1.5 3.2E-05 39.8 18.7 147 200-350 397-546 (660)
234 KOG3941 Intermediate in Toll s 95.7 0.15 3.2E-06 42.9 9.9 92 338-436 66-178 (406)
235 COG4649 Uncharacterized protei 95.6 0.41 9E-06 37.1 11.0 54 141-194 143-196 (221)
236 PF04053 Coatomer_WDAD: Coatom 95.6 0.23 4.9E-06 46.1 11.7 160 34-226 269-428 (443)
237 PF04053 Coatomer_WDAD: Coatom 95.4 0.53 1.1E-05 43.8 13.5 158 173-365 269-428 (443)
238 COG5107 RNA14 Pre-mRNA 3'-end 95.3 2.2 4.9E-05 38.7 31.7 141 305-458 398-544 (660)
239 KOG1585 Protein required for f 95.2 1.5 3.2E-05 36.4 15.4 25 29-53 34-58 (308)
240 PF13512 TPR_18: Tetratricopep 95.2 0.35 7.7E-06 36.5 9.5 85 25-109 9-96 (142)
241 KOG2280 Vacuolar assembly/sort 95.1 3.4 7.5E-05 40.1 22.2 271 61-364 506-795 (829)
242 KOG1920 IkappaB kinase complex 95.1 3 6.4E-05 42.8 18.1 55 242-296 972-1026(1265)
243 KOG4555 TPR repeat-containing 95.1 0.49 1.1E-05 34.8 9.5 94 313-411 52-145 (175)
244 KOG2041 WD40 repeat protein [G 95.0 3.7 8E-05 39.6 25.1 187 22-224 688-902 (1189)
245 COG1729 Uncharacterized protei 94.9 0.51 1.1E-05 39.8 10.7 98 306-410 144-244 (262)
246 smart00299 CLH Clathrin heavy 94.9 1.3 2.8E-05 33.8 15.0 43 170-213 12-54 (140)
247 smart00299 CLH Clathrin heavy 94.8 1.4 2.9E-05 33.7 15.3 41 136-177 13-53 (140)
248 COG0457 NrfG FOG: TPR repeat [ 94.7 2.1 4.7E-05 35.7 22.8 94 132-226 61-156 (291)
249 COG1729 Uncharacterized protei 94.6 0.48 1E-05 39.9 10.0 24 274-297 220-243 (262)
250 KOG4555 TPR repeat-containing 94.6 0.37 7.9E-06 35.4 8.0 90 71-160 52-145 (175)
251 KOG0543 FKBP-type peptidyl-pro 94.6 0.32 7E-06 43.2 9.1 94 132-228 259-354 (397)
252 KOG2610 Uncharacterized conser 94.3 1.1 2.5E-05 38.8 11.5 151 107-260 115-272 (491)
253 COG4105 ComL DNA uptake lipopr 94.3 2.8 6.1E-05 35.2 19.1 50 74-123 46-99 (254)
254 PF09613 HrpB1_HrpK: Bacterial 94.3 1.8 3.9E-05 33.5 11.5 72 32-105 16-87 (160)
255 PF09205 DUF1955: Domain of un 94.3 1.6 3.5E-05 32.3 16.2 60 275-335 92-151 (161)
256 KOG2610 Uncharacterized conser 94.2 2.1 4.4E-05 37.3 12.7 115 213-329 116-234 (491)
257 PF10602 RPN7: 26S proteasome 94.2 0.47 1E-05 38.0 8.7 97 306-408 38-140 (177)
258 KOG0543 FKBP-type peptidyl-pro 94.2 0.99 2.1E-05 40.3 11.2 69 272-343 260-328 (397)
259 PF08631 SPO22: Meiosis protei 94.2 3.6 7.7E-05 35.9 23.1 164 201-365 85-272 (278)
260 PF04184 ST7: ST7 protein; In 94.1 3.7 8.1E-05 38.0 14.8 26 383-408 297-322 (539)
261 PRK11906 transcriptional regul 93.9 4.4 9.6E-05 37.3 15.1 145 285-439 274-432 (458)
262 PF04184 ST7: ST7 protein; In 93.9 5.3 0.00012 37.1 18.9 58 206-263 265-323 (539)
263 PF07035 Mic1: Colon cancer-as 93.9 2.5 5.3E-05 33.2 14.7 31 187-217 16-46 (167)
264 COG0457 NrfG FOG: TPR repeat [ 93.9 3.2 7E-05 34.6 26.7 200 202-410 61-265 (291)
265 KOG1464 COP9 signalosome, subu 93.8 3.6 7.8E-05 34.7 19.8 146 274-429 150-317 (440)
266 COG4649 Uncharacterized protei 93.7 2.7 5.8E-05 32.9 12.9 123 175-297 68-195 (221)
267 KOG2114 Vacuolar assembly/sort 93.7 2.3 5.1E-05 41.8 13.4 180 64-261 336-516 (933)
268 PF04097 Nic96: Nup93/Nic96; 93.4 8.5 0.00018 38.0 17.5 87 208-298 266-356 (613)
269 COG3629 DnrI DNA-binding trans 93.4 0.7 1.5E-05 39.6 8.8 77 167-244 155-236 (280)
270 KOG1585 Protein required for f 93.4 4 8.8E-05 33.9 17.7 136 65-224 34-174 (308)
271 PF13170 DUF4003: Protein of u 93.4 5.2 0.00011 35.1 15.6 63 286-348 160-226 (297)
272 PF13428 TPR_14: Tetratricopep 93.3 0.35 7.6E-06 28.1 5.1 28 97-124 3-30 (44)
273 COG3629 DnrI DNA-binding trans 93.3 0.66 1.4E-05 39.7 8.5 78 96-174 154-236 (280)
274 PF07035 Mic1: Colon cancer-as 93.3 3.3 7.1E-05 32.5 15.0 51 151-205 15-65 (167)
275 KOG4570 Uncharacterized conser 93.0 0.35 7.7E-06 41.3 6.4 98 58-159 60-164 (418)
276 COG4105 ComL DNA uptake lipopr 93.0 4.9 0.00011 33.8 19.1 58 346-409 174-232 (254)
277 PF10602 RPN7: 26S proteasome 92.8 1.1 2.3E-05 35.9 8.8 61 97-157 38-100 (177)
278 COG3118 Thioredoxin domain-con 92.8 5.7 0.00012 34.2 17.0 53 210-263 144-196 (304)
279 PF13929 mRNA_stabil: mRNA sta 92.7 5.9 0.00013 34.1 14.0 178 42-225 72-263 (292)
280 PF13176 TPR_7: Tetratricopept 92.7 0.32 6.9E-06 26.7 4.1 26 97-122 1-26 (36)
281 PF09613 HrpB1_HrpK: Bacterial 92.7 3.8 8.2E-05 31.8 12.2 20 175-194 54-73 (160)
282 KOG1941 Acetylcholine receptor 92.5 7.4 0.00016 34.5 14.5 48 36-83 16-64 (518)
283 PF13176 TPR_7: Tetratricopept 92.4 0.35 7.6E-06 26.6 4.0 26 383-408 1-26 (36)
284 KOG2114 Vacuolar assembly/sort 92.4 12 0.00027 37.1 26.0 182 24-226 332-516 (933)
285 PF13929 mRNA_stabil: mRNA sta 92.4 5.5 0.00012 34.2 12.5 136 75-210 141-288 (292)
286 PF13428 TPR_14: Tetratricopep 91.8 0.44 9.4E-06 27.7 4.1 26 272-297 4-29 (44)
287 COG4785 NlpI Lipoprotein NlpI, 91.7 6.4 0.00014 32.2 13.2 27 271-297 239-265 (297)
288 PF13170 DUF4003: Protein of u 91.6 9 0.0002 33.7 20.4 131 111-243 78-225 (297)
289 PRK11619 lytic murein transgly 91.5 16 0.00034 36.3 27.6 140 35-183 42-181 (644)
290 TIGR02561 HrpB1_HrpK type III 91.5 5 0.00011 30.6 11.7 57 34-92 18-74 (153)
291 cd00923 Cyt_c_Oxidase_Va Cytoc 91.5 1.4 3E-05 30.5 6.5 46 320-365 23-68 (103)
292 KOG1920 IkappaB kinase complex 91.4 20 0.00044 37.3 27.4 109 272-407 942-1052(1265)
293 KOG2066 Vacuolar assembly/sort 91.1 17 0.00037 35.9 25.1 103 32-142 362-467 (846)
294 PF02284 COX5A: Cytochrome c o 91.0 1.2 2.6E-05 31.1 6.0 57 12-70 31-87 (108)
295 PRK15180 Vi polysaccharide bio 90.9 13 0.00028 34.4 14.6 87 245-332 333-419 (831)
296 KOG1550 Extracellular protein 90.8 17 0.00037 35.4 19.8 121 73-195 260-394 (552)
297 cd00923 Cyt_c_Oxidase_Va Cytoc 90.6 1.5 3.3E-05 30.3 6.1 44 184-227 26-69 (103)
298 PF02284 COX5A: Cytochrome c o 90.6 3.8 8.1E-05 28.8 8.0 41 223-263 33-73 (108)
299 PF11207 DUF2989: Protein of u 90.2 3.8 8.2E-05 33.1 9.1 75 321-400 123-197 (203)
300 PF00515 TPR_1: Tetratricopept 90.1 0.69 1.5E-05 24.8 3.6 26 307-332 4-29 (34)
301 PF13512 TPR_18: Tetratricopep 90.1 6.9 0.00015 29.7 11.9 25 274-298 52-76 (142)
302 PF04097 Nic96: Nup93/Nic96; 89.8 22 0.00048 35.2 19.8 49 25-75 110-158 (613)
303 COG2976 Uncharacterized protei 89.6 9.6 0.00021 30.6 10.8 126 27-160 55-189 (207)
304 KOG4570 Uncharacterized conser 89.5 9.2 0.0002 33.2 11.2 103 125-229 59-164 (418)
305 PF13374 TPR_10: Tetratricopep 89.3 1.1 2.3E-05 25.3 4.3 29 381-409 2-30 (42)
306 TIGR02561 HrpB1_HrpK type III 89.3 8.2 0.00018 29.5 10.8 51 248-298 23-73 (153)
307 PRK11906 transcriptional regul 89.0 19 0.00042 33.4 16.7 78 253-332 322-400 (458)
308 KOG0890 Protein kinase of the 88.3 51 0.0011 37.5 24.9 149 68-224 1389-1542(2382)
309 PF10345 Cohesin_load: Cohesin 88.3 28 0.00062 34.5 28.2 71 350-421 372-452 (608)
310 PF00515 TPR_1: Tetratricopept 88.2 1.8 3.9E-05 23.1 4.5 30 382-411 2-31 (34)
311 KOG1586 Protein required for f 87.8 15 0.00032 30.6 14.0 21 315-335 165-185 (288)
312 KOG4648 Uncharacterized conser 87.7 2 4.4E-05 37.5 6.4 112 276-401 104-215 (536)
313 PF10345 Cohesin_load: Cohesin 87.4 32 0.0007 34.1 32.7 395 29-428 62-584 (608)
314 PF13431 TPR_17: Tetratricopep 87.2 0.6 1.3E-05 25.3 2.1 20 304-323 13-32 (34)
315 PF13431 TPR_17: Tetratricopep 87.2 0.69 1.5E-05 25.0 2.3 21 164-184 12-32 (34)
316 KOG0276 Vesicle coat complex C 87.0 8.8 0.00019 36.6 10.3 98 107-225 649-746 (794)
317 PF02259 FAT: FAT domain; Int 86.9 24 0.00051 32.0 20.7 53 137-193 5-57 (352)
318 PF07719 TPR_2: Tetratricopept 86.8 1.5 3.3E-05 23.3 3.6 23 309-331 6-28 (34)
319 PHA02875 ankyrin repeat protei 86.8 27 0.00059 32.6 15.2 13 74-86 11-23 (413)
320 PF02259 FAT: FAT domain; Int 86.4 25 0.00054 31.8 18.9 67 162-228 143-212 (352)
321 PF07719 TPR_2: Tetratricopept 86.4 2.6 5.6E-05 22.3 4.5 29 382-410 2-30 (34)
322 PF00637 Clathrin: Region in C 85.8 0.54 1.2E-05 36.1 2.0 84 136-226 13-96 (143)
323 PF13374 TPR_10: Tetratricopep 85.7 2.3 5.1E-05 23.8 4.3 28 96-123 3-30 (42)
324 KOG0403 Neoplastic transformat 85.7 29 0.00063 31.9 19.5 78 342-431 512-589 (645)
325 PF13174 TPR_6: Tetratricopept 84.7 2.4 5.2E-05 22.2 3.8 28 29-56 3-30 (33)
326 PF11207 DUF2989: Protein of u 84.3 6.7 0.00015 31.7 7.4 73 147-220 123-198 (203)
327 KOG1258 mRNA processing protei 84.2 40 0.00088 32.3 31.9 382 60-460 43-486 (577)
328 PF00637 Clathrin: Region in C 83.9 0.6 1.3E-05 35.8 1.5 85 274-365 12-96 (143)
329 PF07721 TPR_4: Tetratricopept 83.4 2.2 4.7E-05 21.3 2.9 23 384-406 4-26 (26)
330 PRK09687 putative lyase; Provi 83.4 30 0.00065 30.2 25.4 57 302-365 204-260 (280)
331 PHA02875 ankyrin repeat protei 83.2 40 0.00086 31.5 14.6 72 12-88 16-91 (413)
332 PF13762 MNE1: Mitochondrial s 83.0 19 0.00041 27.6 10.4 88 373-460 29-126 (145)
333 COG1747 Uncharacterized N-term 83.0 42 0.00092 31.6 17.7 200 23-227 63-286 (711)
334 COG4455 ImpE Protein of avirul 82.1 8 0.00017 31.7 6.9 21 98-118 38-58 (273)
335 KOG1464 COP9 signalosome, subu 82.0 31 0.00067 29.4 16.8 233 159-430 20-286 (440)
336 TIGR03504 FimV_Cterm FimV C-te 81.8 3 6.6E-05 24.2 3.4 26 386-411 4-29 (44)
337 PRK09687 putative lyase; Provi 81.2 37 0.00079 29.7 27.7 69 272-349 209-277 (280)
338 KOG0890 Protein kinase of the 80.3 1.2E+02 0.0025 34.9 26.3 315 31-367 1388-1730(2382)
339 PF13181 TPR_8: Tetratricopept 79.9 6 0.00013 20.9 4.2 29 382-410 2-30 (34)
340 COG4455 ImpE Protein of avirul 79.9 17 0.00036 30.0 8.0 76 272-348 4-81 (273)
341 KOG0276 Vesicle coat complex C 79.3 21 0.00046 34.2 9.6 150 177-365 598-747 (794)
342 PF07575 Nucleopor_Nup85: Nup8 79.1 68 0.0015 31.5 18.5 49 27-89 149-197 (566)
343 PF13181 TPR_8: Tetratricopept 79.1 7.2 0.00016 20.6 4.4 27 97-123 3-29 (34)
344 KOG1550 Extracellular protein 78.9 68 0.0015 31.4 23.4 178 78-263 228-425 (552)
345 KOG2908 26S proteasome regulat 78.7 47 0.001 29.4 11.1 82 345-430 81-170 (380)
346 PF06552 TOM20_plant: Plant sp 78.3 30 0.00065 27.6 8.8 29 42-72 7-35 (186)
347 TIGR02508 type_III_yscG type I 78.3 21 0.00045 25.1 9.0 90 38-134 17-106 (115)
348 KOG2066 Vacuolar assembly/sort 78.0 79 0.0017 31.6 22.5 104 67-177 361-467 (846)
349 TIGR03504 FimV_Cterm FimV C-te 76.9 7.6 0.00016 22.5 4.0 23 310-332 5-27 (44)
350 PF07163 Pex26: Pex26 protein; 76.9 32 0.00069 29.6 9.1 86 242-327 90-181 (309)
351 PF07163 Pex26: Pex26 protein; 76.8 26 0.00055 30.1 8.6 88 101-188 89-181 (309)
352 KOG4077 Cytochrome c oxidase, 76.6 14 0.0003 27.2 6.1 41 187-227 71-111 (149)
353 PF11848 DUF3368: Domain of un 76.4 12 0.00027 22.1 5.0 35 390-424 11-45 (48)
354 KOG4077 Cytochrome c oxidase, 76.2 20 0.00043 26.5 6.8 44 322-365 67-110 (149)
355 PF10579 Rapsyn_N: Rapsyn N-te 76.1 6.1 0.00013 26.3 3.9 49 350-404 17-66 (80)
356 COG4785 NlpI Lipoprotein NlpI, 75.9 44 0.00095 27.6 14.5 177 78-263 81-265 (297)
357 COG2909 MalT ATP-dependent tra 75.9 97 0.0021 31.6 24.4 224 106-329 426-684 (894)
358 COG2976 Uncharacterized protei 75.5 42 0.00091 27.2 12.3 89 244-334 98-189 (207)
359 KOG4234 TPR repeat-containing 75.1 33 0.00071 27.9 8.3 18 211-228 106-123 (271)
360 PF11848 DUF3368: Domain of un 74.2 15 0.00033 21.7 5.0 34 314-347 12-45 (48)
361 COG5159 RPN6 26S proteasome re 73.7 59 0.0013 28.1 15.9 57 308-364 129-190 (421)
362 PF06552 TOM20_plant: Plant sp 73.5 30 0.00066 27.5 7.7 84 353-444 42-137 (186)
363 KOG4234 TPR repeat-containing 73.2 33 0.00072 27.9 7.9 88 105-194 105-197 (271)
364 PF11846 DUF3366: Domain of un 71.9 22 0.00048 28.9 7.4 54 351-410 120-173 (193)
365 PF11838 ERAP1_C: ERAP1-like C 71.4 76 0.0016 28.3 13.2 107 78-189 146-261 (324)
366 KOG4648 Uncharacterized conser 71.2 13 0.00027 32.8 5.7 52 173-226 105-157 (536)
367 TIGR02508 type_III_yscG type I 71.0 34 0.00074 24.2 7.3 60 276-342 46-105 (115)
368 PF09477 Type_III_YscG: Bacter 70.2 37 0.00081 24.3 10.7 89 38-133 18-106 (116)
369 PF08424 NRDE-2: NRDE-2, neces 69.6 84 0.0018 28.2 16.2 126 285-412 47-185 (321)
370 KOG2582 COP9 signalosome, subu 69.6 86 0.0019 28.2 15.4 56 279-334 287-346 (422)
371 PF11663 Toxin_YhaV: Toxin wit 69.1 6.3 0.00014 29.4 3.0 32 281-314 107-138 (140)
372 smart00028 TPR Tetratricopepti 69.0 11 0.00025 18.6 3.7 26 307-332 4-29 (34)
373 cd00280 TRFH Telomeric Repeat 68.9 56 0.0012 26.2 8.2 44 386-432 116-159 (200)
374 PF11663 Toxin_YhaV: Toxin wit 68.8 7.4 0.00016 29.0 3.3 34 391-426 105-138 (140)
375 PRK14956 DNA polymerase III su 68.7 61 0.0013 30.8 10.0 33 97-129 250-282 (484)
376 PRK11619 lytic murein transgly 68.7 1.3E+02 0.0029 30.1 34.4 118 178-297 254-374 (644)
377 COG0735 Fur Fe2+/Zn2+ uptake r 68.6 39 0.00084 26.0 7.5 66 290-356 7-72 (145)
378 PF14561 TPR_20: Tetratricopep 68.4 37 0.00079 23.5 7.3 56 23-78 19-74 (90)
379 KOG2063 Vacuolar assembly/sort 68.0 1.5E+02 0.0034 30.6 16.4 38 140-177 601-638 (877)
380 KOG4507 Uncharacterized conser 67.0 49 0.0011 31.8 8.8 87 107-194 619-705 (886)
381 COG2909 MalT ATP-dependent tra 67.0 1.6E+02 0.0034 30.2 27.8 225 140-364 425-684 (894)
382 PF11846 DUF3366: Domain of un 66.9 12 0.00027 30.4 4.8 41 84-124 133-173 (193)
383 PF10579 Rapsyn_N: Rapsyn N-te 66.5 36 0.00079 22.8 6.3 49 316-364 18-68 (80)
384 KOG3807 Predicted membrane pro 65.5 78 0.0017 28.0 9.2 49 315-365 286-337 (556)
385 PF04190 DUF410: Protein of un 65.3 90 0.002 26.9 14.3 107 281-404 2-113 (260)
386 PF13934 ELYS: Nuclear pore co 64.6 70 0.0015 26.9 8.9 105 6-117 90-198 (226)
387 PF12862 Apc5: Anaphase-promot 64.5 46 0.00099 23.2 7.1 58 349-409 8-69 (94)
388 PRK10564 maltose regulon perip 64.4 16 0.00034 31.8 5.0 40 96-135 258-297 (303)
389 KOG0991 Replication factor C, 64.0 88 0.0019 26.3 12.5 146 274-429 135-285 (333)
390 KOG4642 Chaperone-dependent E3 63.4 91 0.002 26.3 12.1 118 281-405 22-141 (284)
391 PF14689 SPOB_a: Sensor_kinase 62.3 22 0.00048 22.5 4.3 26 203-228 26-51 (62)
392 COG5108 RPO41 Mitochondrial DN 62.3 49 0.0011 32.3 8.1 74 386-459 33-113 (1117)
393 COG0735 Fur Fe2+/Zn2+ uptake r 62.2 59 0.0013 25.0 7.4 42 171-212 26-67 (145)
394 COG5108 RPO41 Mitochondrial DN 62.0 47 0.001 32.4 7.9 76 344-427 33-114 (1117)
395 KOG4507 Uncharacterized conser 61.9 44 0.00096 32.1 7.6 135 197-333 568-705 (886)
396 KOG2063 Vacuolar assembly/sort 60.7 2.1E+02 0.0046 29.7 20.5 115 97-211 506-637 (877)
397 KOG2396 HAT (Half-A-TPR) repea 60.4 1.6E+02 0.0034 28.0 31.6 71 22-93 101-171 (568)
398 PF11817 Foie-gras_1: Foie gra 60.2 75 0.0016 27.1 8.6 62 344-407 183-244 (247)
399 PF13762 MNE1: Mitochondrial s 59.7 78 0.0017 24.3 11.3 78 66-143 43-128 (145)
400 PRK14962 DNA polymerase III su 59.7 1.7E+02 0.0036 28.1 12.0 31 100-131 249-279 (472)
401 KOG2297 Predicted translation 59.1 1.3E+02 0.0027 26.5 17.3 171 163-359 163-341 (412)
402 PRK10564 maltose regulon perip 58.9 29 0.00064 30.2 5.7 45 375-419 250-295 (303)
403 PRK13342 recombination factor 58.4 1.6E+02 0.0035 27.5 15.9 44 112-157 154-201 (413)
404 KOG0686 COP9 signalosome, subu 57.4 1.6E+02 0.0034 27.1 13.8 92 272-365 153-255 (466)
405 PF10366 Vps39_1: Vacuolar sor 57.4 70 0.0015 23.1 9.5 26 272-297 42-67 (108)
406 PF14689 SPOB_a: Sensor_kinase 57.3 16 0.00035 23.1 3.0 22 101-122 29-50 (62)
407 KOG2168 Cullins [Cell cycle co 56.4 2.4E+02 0.0052 28.9 25.9 48 381-430 702-754 (835)
408 KOG4279 Serine/threonine prote 56.1 2.3E+02 0.005 28.6 15.3 189 218-410 181-395 (1226)
409 KOG4279 Serine/threonine prote 55.2 2.4E+02 0.0051 28.5 12.4 190 80-297 181-394 (1226)
410 PF04762 IKI3: IKI3 family; I 54.7 1.4E+02 0.0031 31.5 10.7 201 25-226 693-927 (928)
411 KOG4567 GTPase-activating prot 53.9 84 0.0018 27.6 7.4 71 150-225 263-343 (370)
412 PF09477 Type_III_YscG: Bacter 52.3 86 0.0019 22.6 7.5 78 251-334 22-99 (116)
413 PRK14958 DNA polymerase III su 51.7 1.2E+02 0.0026 29.3 9.1 20 109-128 259-278 (509)
414 KOG2396 HAT (Half-A-TPR) repea 51.5 2.2E+02 0.0048 27.1 22.3 90 239-330 464-556 (568)
415 KOG2471 TPR repeat-containing 51.5 2.2E+02 0.0048 27.0 13.2 107 278-393 249-381 (696)
416 KOG0686 COP9 signalosome, subu 51.4 2E+02 0.0044 26.5 12.8 56 66-121 154-213 (466)
417 PHA03100 ankyrin repeat protei 51.1 2.3E+02 0.0049 27.1 12.6 23 139-165 41-63 (480)
418 COG3947 Response regulator con 51.0 1.7E+02 0.0037 25.6 14.7 69 272-341 282-355 (361)
419 PRK07003 DNA polymerase III su 51.0 2.9E+02 0.0064 28.3 13.0 31 98-129 249-279 (830)
420 PRK11639 zinc uptake transcrip 50.7 1.2E+02 0.0026 24.1 7.6 62 295-357 17-78 (169)
421 KOG2300 Uncharacterized conser 50.7 2.3E+02 0.0049 26.9 31.2 371 39-417 60-522 (629)
422 PF14853 Fis1_TPR_C: Fis1 C-te 50.6 56 0.0012 19.9 5.4 39 29-70 4-42 (53)
423 PF01475 FUR: Ferric uptake re 50.3 49 0.0011 24.3 5.2 51 307-357 10-60 (120)
424 PF09454 Vps23_core: Vps23 cor 50.2 56 0.0012 21.0 4.6 49 162-211 5-53 (65)
425 PRK06645 DNA polymerase III su 50.2 90 0.002 30.1 8.0 30 99-129 262-291 (507)
426 cd07153 Fur_like Ferric uptake 49.8 56 0.0012 23.8 5.4 49 309-357 5-53 (116)
427 KOG2659 LisH motif-containing 47.6 1.7E+02 0.0036 24.5 8.7 66 58-123 22-92 (228)
428 KOG2422 Uncharacterized conser 47.3 2.8E+02 0.0061 27.0 11.4 150 28-180 344-498 (665)
429 PRK13342 recombination factor 47.3 2.5E+02 0.0053 26.4 18.2 96 273-368 231-334 (413)
430 PF10255 Paf67: RNA polymerase 46.7 2.5E+02 0.0053 26.2 14.8 60 237-296 124-191 (404)
431 PF02847 MA3: MA3 domain; Int 46.0 1.1E+02 0.0024 22.0 6.5 21 101-121 8-28 (113)
432 PF11838 ERAP1_C: ERAP1-like C 45.7 2.2E+02 0.0048 25.3 15.5 109 111-224 146-261 (324)
433 cd08819 CARD_MDA5_2 Caspase ac 45.2 1E+02 0.0022 21.2 6.6 34 213-251 49-82 (88)
434 KOG2062 26S proteasome regulat 45.0 3.5E+02 0.0075 27.4 25.6 120 313-442 510-634 (929)
435 PF08424 NRDE-2: NRDE-2, neces 44.7 2.3E+02 0.0051 25.4 16.0 120 218-338 49-189 (321)
436 KOG2659 LisH motif-containing 44.7 1.9E+02 0.0041 24.3 9.2 98 21-121 21-129 (228)
437 PF08311 Mad3_BUB1_I: Mad3/BUB 44.7 1.3E+02 0.0028 22.4 7.5 42 79-120 80-124 (126)
438 PF11123 DNA_Packaging_2: DNA 44.2 76 0.0017 20.8 4.4 32 285-317 13-44 (82)
439 PRK11639 zinc uptake transcrip 43.9 1.6E+02 0.0035 23.4 7.4 13 183-195 43-55 (169)
440 PRK15180 Vi polysaccharide bio 43.8 2.9E+02 0.0063 26.2 31.8 129 29-160 292-421 (831)
441 PRK09857 putative transposase; 43.3 2.1E+02 0.0047 25.2 8.8 58 176-234 217-274 (292)
442 KOG0687 26S proteasome regulat 43.1 2.5E+02 0.0053 25.1 14.6 95 272-366 107-208 (393)
443 cd07153 Fur_like Ferric uptake 42.7 92 0.002 22.6 5.6 45 386-430 5-49 (116)
444 KOG4567 GTPase-activating prot 42.4 1.9E+02 0.0041 25.6 7.8 44 323-366 262-305 (370)
445 cd08819 CARD_MDA5_2 Caspase ac 42.1 1.1E+02 0.0025 21.0 6.8 14 283-296 50-63 (88)
446 PRK08691 DNA polymerase III su 42.0 2.3E+02 0.0049 28.7 9.4 31 98-129 249-279 (709)
447 PF11817 Foie-gras_1: Foie gra 41.9 1.3E+02 0.0028 25.7 7.1 57 135-191 183-244 (247)
448 smart00386 HAT HAT (Half-A-TPR 41.7 49 0.0011 16.7 3.6 14 284-297 2-15 (33)
449 KOG1839 Uncharacterized protei 41.5 4.5E+02 0.0097 28.6 11.6 140 264-403 968-1121(1236)
450 PF02184 HAT: HAT (Half-A-TPR) 41.3 42 0.00092 17.9 2.5 25 396-422 2-26 (32)
451 PF09454 Vps23_core: Vps23 cor 40.6 99 0.0021 19.9 4.7 51 301-352 5-55 (65)
452 PRK14951 DNA polymerase III su 40.3 1.8E+02 0.0039 29.0 8.5 29 99-128 255-283 (618)
453 PF02631 RecX: RecX family; I 40.0 98 0.0021 22.8 5.4 47 400-446 11-58 (121)
454 PF09670 Cas_Cas02710: CRISPR- 39.8 3.1E+02 0.0067 25.4 11.4 54 175-229 141-198 (379)
455 COG4003 Uncharacterized protei 39.3 58 0.0013 21.8 3.4 29 31-59 36-64 (98)
456 PF01475 FUR: Ferric uptake re 39.2 95 0.002 22.8 5.2 45 386-430 12-56 (120)
457 KOG1308 Hsp70-interacting prot 38.9 30 0.00066 30.6 2.8 89 107-198 126-215 (377)
458 KOG0687 26S proteasome regulat 38.6 2.9E+02 0.0063 24.7 12.3 40 96-135 105-148 (393)
459 PF14669 Asp_Glu_race_2: Putat 38.6 2.2E+02 0.0047 23.2 14.1 55 274-328 137-205 (233)
460 PF02847 MA3: MA3 domain; Int 38.5 1.5E+02 0.0032 21.3 6.3 24 67-90 7-30 (113)
461 PRK09462 fur ferric uptake reg 38.4 1.8E+02 0.004 22.3 7.4 62 294-356 7-69 (148)
462 PRK09462 fur ferric uptake reg 38.3 1.8E+02 0.004 22.3 7.6 33 181-213 33-65 (148)
463 KOG0991 Replication factor C, 38.2 2.5E+02 0.0054 23.8 11.4 47 301-349 236-282 (333)
464 PF15297 CKAP2_C: Cytoskeleton 38.1 2.3E+02 0.0049 25.6 7.9 63 79-141 120-186 (353)
465 PF07443 HARP: HepA-related pr 37.8 12 0.00026 22.9 0.2 35 395-429 6-40 (55)
466 PF10475 DUF2450: Protein of u 37.1 2.9E+02 0.0064 24.3 9.3 155 203-364 63-222 (291)
467 COG0320 LipA Lipoate synthase 37.1 15 0.00033 31.2 0.7 50 394-445 193-242 (306)
468 PF09868 DUF2095: Uncharacteri 36.9 1.4E+02 0.0031 21.6 5.3 38 31-70 66-103 (128)
469 PF10366 Vps39_1: Vacuolar sor 36.6 1.6E+02 0.0035 21.2 8.5 27 167-193 41-67 (108)
470 COG0790 FOG: TPR repeat, SEL1 36.5 2.9E+02 0.0063 24.1 18.8 206 39-252 54-289 (292)
471 KOG4642 Chaperone-dependent E3 36.2 2.7E+02 0.0059 23.7 9.5 17 140-156 88-104 (284)
472 KOG3636 Uncharacterized conser 35.9 3.7E+02 0.0081 25.1 13.7 226 18-248 14-273 (669)
473 KOG4814 Uncharacterized conser 35.8 3.1E+02 0.0068 27.1 8.8 93 97-192 357-455 (872)
474 PF07064 RIC1: RIC1; InterPro 35.7 2.9E+02 0.0063 23.9 12.2 155 29-195 85-250 (258)
475 COG2812 DnaX DNA polymerase II 35.5 2.3E+02 0.0049 27.4 8.1 24 107-130 257-280 (515)
476 KOG4814 Uncharacterized conser 35.4 3.5E+02 0.0075 26.8 9.0 88 34-123 362-456 (872)
477 PF11768 DUF3312: Protein of u 35.2 2.7E+02 0.0059 26.9 8.3 24 29-52 411-434 (545)
478 PF04190 DUF410: Protein of un 34.9 3E+02 0.0065 23.8 19.7 86 264-368 85-170 (260)
479 KOG2471 TPR repeat-containing 34.8 4.1E+02 0.009 25.4 14.3 41 38-79 29-69 (696)
480 COG4259 Uncharacterized protei 34.7 1.7E+02 0.0036 20.8 6.6 16 244-259 81-96 (121)
481 smart00638 LPD_N Lipoprotein N 34.7 4.6E+02 0.01 25.9 24.3 63 61-126 309-371 (574)
482 PF02607 B12-binding_2: B12 bi 34.7 89 0.0019 20.7 4.1 39 315-353 12-50 (79)
483 PRK09857 putative transposase; 34.4 3.3E+02 0.0071 24.1 8.8 66 342-415 209-274 (292)
484 PF12862 Apc5: Anaphase-promot 33.9 1.6E+02 0.0035 20.4 7.4 24 346-369 48-71 (94)
485 PRK14956 DNA polymerase III su 33.9 3.4E+02 0.0073 26.1 8.8 73 107-201 212-284 (484)
486 PF07575 Nucleopor_Nup85: Nup8 33.6 4.8E+02 0.01 25.8 20.1 26 95-121 149-174 (566)
487 TIGR01503 MthylAspMut_E methyl 33.2 2.3E+02 0.0051 26.7 7.4 24 100-123 91-114 (480)
488 PF00244 14-3-3: 14-3-3 protei 32.8 3.1E+02 0.0067 23.3 11.3 58 204-261 5-63 (236)
489 COG4003 Uncharacterized protei 32.5 86 0.0019 21.0 3.4 26 386-411 36-61 (98)
490 PF09670 Cas_Cas02710: CRISPR- 32.4 4.1E+02 0.0089 24.6 12.3 57 276-333 138-198 (379)
491 KOG1308 Hsp70-interacting prot 32.3 31 0.00068 30.6 1.9 95 212-307 126-220 (377)
492 TIGR01503 MthylAspMut_E methyl 32.2 3E+02 0.0064 26.0 7.9 110 251-366 70-196 (480)
493 KOG1498 26S proteasome regulat 31.8 4.2E+02 0.009 24.5 12.3 166 42-230 32-242 (439)
494 PF02607 B12-binding_2: B12 bi 31.4 1.1E+02 0.0024 20.2 4.2 39 393-431 13-51 (79)
495 KOG1586 Protein required for f 31.0 3.3E+02 0.0072 23.1 23.2 62 342-410 157-224 (288)
496 KOG0376 Serine-threonine phosp 30.1 1.9E+02 0.0041 27.3 6.4 106 30-140 8-115 (476)
497 KOG3677 RNA polymerase I-assoc 28.8 4.6E+02 0.01 24.4 8.3 211 134-346 205-426 (525)
498 PHA03100 ankyrin repeat protei 28.7 5.2E+02 0.011 24.6 14.7 13 418-430 413-425 (480)
499 PF14669 Asp_Glu_race_2: Putat 28.4 3.3E+02 0.0072 22.3 15.4 91 306-406 109-206 (233)
500 PF05944 Phage_term_smal: Phag 27.4 2E+02 0.0042 21.8 5.1 27 64-90 50-76 (132)
No 1
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=2.3e-68 Score=523.28 Aligned_cols=430 Identities=16% Similarity=0.193 Sum_probs=413.0
Q ss_pred CccChhchHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCCchhHHHHHHHHHhhcChHHHHHHhhhcCCCCCchhHHHHH
Q 044770 22 FPVHRGEIFHSINRLRKLQLNKRALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQGEKLFCCIPKDYQNELLYNNL 101 (464)
Q Consensus 22 ~~~~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~l 101 (464)
..++...+..++..+++.|++++|+++|++|.+..-+.++..+++.++..|.+.|.+++|..+|+.|.. |+..+|+.+
T Consensus 366 ~~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~--pd~~Tyn~L 443 (1060)
T PLN03218 366 GKRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN--PTLSTFNML 443 (1060)
T ss_pred CCCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC--CCHHHHHHH
Confidence 445677889999999999999999999999998544567888889999999999999999999999997 999999999
Q ss_pred HHHHHhhCcHHHHHHHHHHHHHcCCCCchhhHHHHHHHhcCCCCcccHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCh
Q 044770 102 VIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNI 181 (464)
Q Consensus 102 i~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 181 (464)
+.+|++.|++++|.++|+.|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++
T Consensus 444 L~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~ 523 (1060)
T PLN03218 444 MSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQV 523 (1060)
T ss_pred HHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHhCCCCCcHhHHHHHHHHHHhcChhhHHHHHHHHHHh--ccCCCChhhHHHHHHHHHhhcChhhHHHHHH
Q 044770 182 EGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEK--SMTGNNWSTLDVLIILYGYLAKGKDLERIWA 259 (464)
Q Consensus 182 ~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 259 (464)
++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.. .|+.||..+|+.++.+|++.|++++|.++|+
T Consensus 524 eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~ 603 (1060)
T PLN03218 524 AKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQ 603 (1060)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999976 6789999999999999999999999999999
Q ss_pred Hhcc-CCCCchhhHHHHHHHhhccCChHHHHHHHHHHHhccccCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcc
Q 044770 260 TVQE-LPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPN 338 (464)
Q Consensus 260 ~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~ 338 (464)
.|.+ +..++..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.+++++|.+.|+.||
T Consensus 604 ~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd 683 (1060)
T PLN03218 604 MIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLG 683 (1060)
T ss_pred HHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC
Confidence 9988 557888899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHhHHHHhhhhhcCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCcHHH
Q 044770 339 AITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFV 418 (464)
Q Consensus 339 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~ 418 (464)
..+|+.+|.+|++.|++++|.++|++| ...++.||..+|+.||.+|++.|++++|.++|++|.+.|+.||..|
T Consensus 684 ~~tynsLI~ay~k~G~~eeA~~lf~eM-------~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~T 756 (1060)
T PLN03218 684 TVSYSSLMGACSNAKNWKKALELYEDI-------KSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTIT 756 (1060)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHH-------HHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHH
Confidence 999999999999999999999999999 6789999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCC--hhHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 044770 419 YNTLIKAYVKAKIN--DPNLLRRMILGGARPDAETYSLLKLAEQ 460 (464)
Q Consensus 419 ~~~li~~~~~~g~~--a~~~~~~m~~~~~~p~~~t~~~L~~~~~ 460 (464)
|+.+|.+|++.|+. |.+++.+|++.|+.||..||++|+..|.
T Consensus 757 y~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~ 800 (1060)
T PLN03218 757 YSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCL 800 (1060)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 99999999999984 9999999999999999999999986653
No 2
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=1.1e-68 Score=525.64 Aligned_cols=442 Identities=14% Similarity=0.151 Sum_probs=418.2
Q ss_pred CCCCcchhhHHHHhhcC-ccChhchHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCCchhHHHHHHHHHhhcChHHHHHH
Q 044770 6 RGEPVGSAFQSWMREGF-PVHRGEIFHSINRLRKLQLNKRALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQGEKL 84 (464)
Q Consensus 6 ~~~~~~~~l~~~~~~g~-~~~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 84 (464)
+...+.++|++|.+.|+ +++...+..++..|.+.|.+++|.++++.|.. |+..+|+.++.+|++.|+++.|.++
T Consensus 385 ~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~-----pd~~Tyn~LL~a~~k~g~~e~A~~l 459 (1060)
T PLN03218 385 RIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN-----PTLSTFNMLMSVCASSQDIDGALRV 459 (1060)
T ss_pred CHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC-----CCHHHHHHHHHHHHhCcCHHHHHHH
Confidence 34567899999999986 56667777899999999999999999998853 8999999999999999999999999
Q ss_pred hhhcCCC--CCchhHHHHHHHHHHhhCcHHHHHHHHHHHHHcCCCCchhhHHHHHHHhcCCCCcccHHHHHHHHHhCCCC
Q 044770 85 FCCIPKD--YQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVA 162 (464)
Q Consensus 85 ~~~~~~~--~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 162 (464)
|+.|.+. .||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.
T Consensus 460 f~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~ 539 (1060)
T PLN03218 460 LRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVK 539 (1060)
T ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCC
Confidence 9999877 78999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChhhHHHHHHHHHccCChhHHHHHHHHHHh--CCCCCcHhHHHHHHHHHHhcChhhHHHHHHHHHHhccCCCChhhHHH
Q 044770 163 PHVSTFHILMKIEANDHNIEGLMKVYSDMKR--SEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDV 240 (464)
Q Consensus 163 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~--~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 240 (464)
||..+|+.||.+|++.|++++|.++|++|.. .|+.||..+|+.+|.+|++.|++++|.++|+.|.+.|+.|+..+|+.
T Consensus 540 PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tyns 619 (1060)
T PLN03218 540 PDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTI 619 (1060)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHH
Confidence 9999999999999999999999999999976 67999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcChhhHHHHHHHhcc-CCCCchhhHHHHHHHhhccCChHHHHHHHHHHHhccccCChhhHHHHHHHHHhcCC
Q 044770 241 LIILYGYLAKGKDLERIWATVQE-LPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGF 319 (464)
Q Consensus 241 l~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~ 319 (464)
++.+|++.|++++|.++|+.|.. +..++..+|+.++.+|++.|++++|.++|+.|.+.|..||..+|+.+|.+|++.|+
T Consensus 620 LI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~ 699 (1060)
T PLN03218 620 AVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKN 699 (1060)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCC
Confidence 99999999999999999999988 66788899999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHhCCCCccHHHHHHHHHHHHhcCChHHHHHHHHHhHHHHhhhhhcCCCCcHHHHHHHHHHHHhcCChhh
Q 044770 320 IDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGN 399 (464)
Q Consensus 320 ~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~ 399 (464)
+++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++| ...++.||..||+.++.+|++.|++++
T Consensus 700 ~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM-------~~~Gi~Pd~~Ty~sLL~a~~k~G~le~ 772 (1060)
T PLN03218 700 WKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEM-------KRLGLCPNTITYSILLVASERKDDADV 772 (1060)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH-------HHcCCCCCHHHHHHHHHHHHHCCCHHH
Confidence 9999999999999999999999999999999999999999999999 778999999999999999999999999
Q ss_pred HHHHHHHHHHcCCCCcHHHHHHHHHHHHH----c------------C---------CChhHHHHHHHhCCCCCCHHHHHH
Q 044770 400 AENLFEELKKANYTKYTFVYNTLIKAYVK----A------------K---------INDPNLLRRMILGGARPDAETYSL 454 (464)
Q Consensus 400 A~~~~~~m~~~~~~p~~~~~~~li~~~~~----~------------g---------~~a~~~~~~m~~~~~~p~~~t~~~ 454 (464)
|.++|++|.+.|+.||..+|+.++..|.+ . | ..|+.+|++|++.|+.||..||+.
T Consensus 773 A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~~T~~~ 852 (1060)
T PLN03218 773 GLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISAGTLPTMEVLSQ 852 (1060)
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHCCCCCCHHHHHH
Confidence 99999999999999999999999866442 1 1 127899999999999999999999
Q ss_pred HHHHH
Q 044770 455 LKLAE 459 (464)
Q Consensus 455 L~~~~ 459 (464)
++.+.
T Consensus 853 vL~cl 857 (1060)
T PLN03218 853 VLGCL 857 (1060)
T ss_pred HHHHh
Confidence 98554
No 3
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=1.5e-65 Score=512.57 Aligned_cols=435 Identities=14% Similarity=0.102 Sum_probs=376.5
Q ss_pred CCCCcchhhHHHHhhcCccChhchHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCCchhHHHHHHHHHhhcChHHHHHHh
Q 044770 6 RGEPVGSAFQSWMREGFPVHRGEIFHSINRLRKLQLNKRALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQGEKLF 85 (464)
Q Consensus 6 ~~~~~~~~l~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 85 (464)
..+.+.+++++|...|+.||..+|..++++|+..++++.+.+++..+.+ .|+.|+..+++.++.+|++.|++++|.++|
T Consensus 167 ~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf 245 (857)
T PLN03077 167 YFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVR-FGFELDVDVVNALITMYVKCGDVVSARLVF 245 (857)
T ss_pred CHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHH-cCCCcccchHhHHHHHHhcCCCHHHHHHHH
Confidence 3456788899999999999999999999999999999999999999988 789999999999999999999999999999
Q ss_pred hhcCCCCCchhHHHHHHHHHHhhCcHHHHHHHHHHHHHcCCCCchhhHHHHHHHhcCCCCcccHHHHHHHHHhCCCCCCh
Q 044770 86 CCIPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHV 165 (464)
Q Consensus 86 ~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 165 (464)
++|+. ||..+||++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|+++.+.+++..|.+.|+.||.
T Consensus 246 ~~m~~--~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~ 323 (857)
T PLN03077 246 DRMPR--RDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDV 323 (857)
T ss_pred hcCCC--CCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccch
Confidence 99987 8999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCcHhHHHHHHHHHHhcChhhHHHHHHHHHHhccCCCChhhHHHHHHHH
Q 044770 166 STFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILY 245 (464)
Q Consensus 166 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 245 (464)
.+||+|+.+|++.|++++|.++|++|. .||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..||+.++.+|
T Consensus 324 ~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~ 399 (857)
T PLN03077 324 SVCNSLIQMYLSLGSWGEAEKVFSRME----TKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSAC 399 (857)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHhhCC----CCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHH
Confidence 999999999999999999999999997 5799999999999999999999999999999999999999999999999
Q ss_pred HhhcChhhHHHHHHHhcc-CCCCchhhHHHHHHHhhccCChHHHHHHHHHHHhccccCChhhHHHHHHHHHhcCChhHHH
Q 044770 246 GYLAKGKDLERIWATVQE-LPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKAS 324 (464)
Q Consensus 246 ~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~ 324 (464)
++.|+.+.+.++++.+.+ +..++..++++|+++|++.|++++|.++|++|.+ +|..+|+.+|.+|++.|+.++|+
T Consensus 400 ~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~d~vs~~~mi~~~~~~g~~~eA~ 475 (857)
T PLN03077 400 ACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPE----KDVISWTSIIAGLRLNNRCFEAL 475 (857)
T ss_pred hccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCC----CCeeeHHHHHHHHHHCCCHHHHH
Confidence 999999999999999888 6677888999999999999999999999999986 78889999999999999999999
Q ss_pred HHHHHHHhCCCCccHHHHHHHHHHHHhcCChHHHHHHHHHhHHHHhhhhhcCCCCc------------------------
Q 044770 325 GLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPW------------------------ 380 (464)
Q Consensus 325 ~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~p~------------------------ 380 (464)
.+|++|.. ++.||..||+.++.+|++.|+++.+.+++..+ .+.|+.++
T Consensus 476 ~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~-------~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f 547 (857)
T PLN03077 476 IFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHV-------LRTGIGFDGFLPNALLDLYVRCGRMNYAWNQF 547 (857)
T ss_pred HHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHH-------HHhCCCccceechHHHHHHHHcCCHHHHHHHH
Confidence 99999986 59999999999999999999999999999888 44555554
Q ss_pred ------HHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCcHHHHHHHHHHHHHcCC--ChhHHHHHHH-hCCCCCCHHH
Q 044770 381 ------LETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKI--NDPNLLRRMI-LGGARPDAET 451 (464)
Q Consensus 381 ------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~--~a~~~~~~m~-~~~~~p~~~t 451 (464)
..+||++|.+|++.|+.++|.++|++|.+.|+.||..||+.+|.+|++.|. +|.++|+.|. ..|+.||..|
T Consensus 548 ~~~~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~ 627 (857)
T PLN03077 548 NSHEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKH 627 (857)
T ss_pred HhcCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHH
Confidence 445555555555555555555555555555555555555555555555554 2455555555 3455555555
Q ss_pred HHHHHHHH
Q 044770 452 YSLLKLAE 459 (464)
Q Consensus 452 ~~~L~~~~ 459 (464)
|++++.++
T Consensus 628 y~~lv~~l 635 (857)
T PLN03077 628 YACVVDLL 635 (857)
T ss_pred HHHHHHHH
Confidence 55554443
No 4
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=2e-64 Score=493.02 Aligned_cols=434 Identities=15% Similarity=0.164 Sum_probs=408.3
Q ss_pred CCCcchhhHHHHhh-cCccChhchHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCCchhHHHHHHHHHhhcChHHHHHHh
Q 044770 7 GEPVGSAFQSWMRE-GFPVHRGEIFHSINRLRKLQLNKRALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQGEKLF 85 (464)
Q Consensus 7 ~~~~~~~l~~~~~~-g~~~~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 85 (464)
...+.++|+.|... +..|+..+|..++.+|.+.++++.|.+++..|.+ .|+.||..+|+.++..|++.|+++.|.++|
T Consensus 103 ~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~-~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf 181 (697)
T PLN03081 103 HREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVES-SGFEPDQYMMNRVLLMHVKCGMLIDARRLF 181 (697)
T ss_pred HHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH-hCCCcchHHHHHHHHHHhcCCCHHHHHHHH
Confidence 34577888888876 4789999999999999999999999999999988 789999999999999999999999999999
Q ss_pred hhcCCCCCchhHHHHHHHHHHhhCcHHHHHHHHHHHHHcCCCCchhhHHHHHHHhcCCCCcccHHHHHHHHHhCCCCCCh
Q 044770 86 CCIPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHV 165 (464)
Q Consensus 86 ~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 165 (464)
++|+. ||..+||.+|.+|++.|++++|+++|++|.+.|+.||..+|+.++.+|++.|+.+.+.+++..+.+.|+.||.
T Consensus 182 ~~m~~--~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~ 259 (697)
T PLN03081 182 DEMPE--RNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDT 259 (697)
T ss_pred hcCCC--CCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccc
Confidence 99997 8999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCcHhHHHHHHHHHHhcChhhHHHHHHHHHHhccCCCChhhHHHHHHHH
Q 044770 166 STFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILY 245 (464)
Q Consensus 166 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 245 (464)
.+|++|+++|++.|++++|.++|++|. .+|..+|+.+|.+|++.|++++|.++|++|.+.|+.||..||+.++.+|
T Consensus 260 ~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~ 335 (697)
T PLN03081 260 FVSCALIDMYSKCGDIEDARCVFDGMP----EKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIF 335 (697)
T ss_pred eeHHHHHHHHHHCCCHHHHHHHHHhCC----CCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 999999999999999999999999996 5799999999999999999999999999999999999999999999999
Q ss_pred HhhcChhhHHHHHHHhcc-CCCCchhhHHHHHHHhhccCChHHHHHHHHHHHhccccCChhhHHHHHHHHHhcCChhHHH
Q 044770 246 GYLAKGKDLERIWATVQE-LPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKAS 324 (464)
Q Consensus 246 ~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~ 324 (464)
++.|+++.|.+++..+.+ +..++..++++|+++|++.|++++|.++|++|.+ ||..+||+||.+|++.|+.++|+
T Consensus 336 ~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~----~d~~t~n~lI~~y~~~G~~~~A~ 411 (697)
T PLN03081 336 SRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR----KNLISWNALIAGYGNHGRGTKAV 411 (697)
T ss_pred HhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC----CCeeeHHHHHHHHHHcCCHHHHH
Confidence 999999999999999988 5678889999999999999999999999999976 79999999999999999999999
Q ss_pred HHHHHHHhCCCCccHHHHHHHHHHHHhcCChHHHHHHHHHhHHHHhhhhhcCCCCcHHHHHHHHHHHHhcCChhhHHHHH
Q 044770 325 GLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLF 404 (464)
Q Consensus 325 ~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 404 (464)
++|++|.+.|+.||..||+.++.+|.+.|++++|.++|+.|. ...++.|+..+|+.++++|++.|++++|.+++
T Consensus 412 ~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~------~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~ 485 (697)
T PLN03081 412 EMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMS------ENHRIKPRAMHYACMIELLGREGLLDEAYAMI 485 (697)
T ss_pred HHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHH------HhcCCCCCccchHhHHHHHHhcCCHHHHHHHH
Confidence 999999999999999999999999999999999999999994 34799999999999999999999999999998
Q ss_pred HHHHHcCCCCcHHHHHHHHHHHHHcCCC--hhHHHHHHHhCCCCCC-HHHHHHHHHHHHhh
Q 044770 405 EELKKANYTKYTFVYNTLIKAYVKAKIN--DPNLLRRMILGGARPD-AETYSLLKLAEQFQ 462 (464)
Q Consensus 405 ~~m~~~~~~p~~~~~~~li~~~~~~g~~--a~~~~~~m~~~~~~p~-~~t~~~L~~~~~~~ 462 (464)
++| ++.|+..+|++|+.+|..+|+. |..++++|.+ +.|+ ..+|..|+..+...
T Consensus 486 ~~~---~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~--~~p~~~~~y~~L~~~y~~~ 541 (697)
T PLN03081 486 RRA---PFKPTVNMWAALLTACRIHKNLELGRLAAEKLYG--MGPEKLNNYVVLLNLYNSS 541 (697)
T ss_pred HHC---CCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhC--CCCCCCcchHHHHHHHHhC
Confidence 765 5779999999999999999985 7888888864 5664 57888888766543
No 5
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=3.7e-63 Score=495.40 Aligned_cols=432 Identities=14% Similarity=0.124 Sum_probs=412.4
Q ss_pred CCCCcchhhHHHHhhcCccChhchHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCCchhHHHHHHHHHhhcChHHHHHHh
Q 044770 6 RGEPVGSAFQSWMREGFPVHRGEIFHSINRLRKLQLNKRALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQGEKLF 85 (464)
Q Consensus 6 ~~~~~~~~l~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 85 (464)
....+..+++.|.+.|++|+..++..++..|.+.+.++.|.+++..+.+ .+..++...++.++..|++.|+++.|.++|
T Consensus 66 ~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~n~li~~~~~~g~~~~A~~~f 144 (857)
T PLN03077 66 QLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALS-SHPSLGVRLGNAMLSMFVRFGELVHAWYVF 144 (857)
T ss_pred CHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHH-cCCCCCchHHHHHHHHHHhCCChHHHHHHH
Confidence 3456778899999999999999999999999999999999999999988 567899999999999999999999999999
Q ss_pred hhcCCCCCchhHHHHHHHHHHhhCcHHHHHHHHHHHHHcCCCCchhhHHHHHHHhcCCCCcccHHHHHHHHHhCCCCCCh
Q 044770 86 CCIPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHV 165 (464)
Q Consensus 86 ~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 165 (464)
++|+. ||..+||.+|.+|++.|++++|+++|++|...|+.||..||+.++++|...++++.+.+++..|.+.|+.||.
T Consensus 145 ~~m~~--~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 222 (857)
T PLN03077 145 GKMPE--RDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDV 222 (857)
T ss_pred hcCCC--CCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCccc
Confidence 99997 8999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCcHhHHHHHHHHHHhcChhhHHHHHHHHHHhccCCCChhhHHHHHHHH
Q 044770 166 STFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILY 245 (464)
Q Consensus 166 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 245 (464)
.+||+|+.+|++.|++++|.++|++|. .||..+|+.+|.+|++.|++++|.++|++|...|+.||..||+.++.+|
T Consensus 223 ~~~n~Li~~y~k~g~~~~A~~lf~~m~----~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~ 298 (857)
T PLN03077 223 DVVNALITMYVKCGDVVSARLVFDRMP----RRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISAC 298 (857)
T ss_pred chHhHHHHHHhcCCCHHHHHHHHhcCC----CCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHH
Confidence 999999999999999999999999997 5799999999999999999999999999999999999999999999999
Q ss_pred HhhcChhhHHHHHHHhcc-CCCCchhhHHHHHHHhhccCChHHHHHHHHHHHhccccCChhhHHHHHHHHHhcCChhHHH
Q 044770 246 GYLAKGKDLERIWATVQE-LPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKAS 324 (464)
Q Consensus 246 ~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~ 324 (464)
++.|+.+.+.+++..+.+ +..++..+|++++.+|++.|++++|.++|++|.. ||..+||.+|.+|++.|++++|+
T Consensus 299 ~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~d~~s~n~li~~~~~~g~~~~A~ 374 (857)
T PLN03077 299 ELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMET----KDAVSWTAMISGYEKNGLPDKAL 374 (857)
T ss_pred HhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCC----CCeeeHHHHHHHHHhCCCHHHHH
Confidence 999999999999999887 6778899999999999999999999999999976 79999999999999999999999
Q ss_pred HHHHHHHhCCCCccHHHHHHHHHHHHhcCChHHHHHHHHHhHHHHhhhhhcCCCCcHHHHHHHHHHHHhcCChhhHHHHH
Q 044770 325 GLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLF 404 (464)
Q Consensus 325 ~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 404 (464)
++|++|.+.|+.||..||+.++.+|++.|+++.|.++++.+ .+.|..|+..+|++|+++|+++|++++|.++|
T Consensus 375 ~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~-------~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf 447 (857)
T PLN03077 375 ETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELA-------ERKGLISYVVVANALIEMYSKCKCIDKALEVF 447 (857)
T ss_pred HHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHH-------HHhCCCcchHHHHHHHHHHHHcCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999 77899999999999999999999999999999
Q ss_pred HHHHHcCCCCcHHHHHHHHHHHHHcCCC--hhHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 044770 405 EELKKANYTKYTFVYNTLIKAYVKAKIN--DPNLLRRMILGGARPDAETYSLLKLAEQ 460 (464)
Q Consensus 405 ~~m~~~~~~p~~~~~~~li~~~~~~g~~--a~~~~~~m~~~~~~p~~~t~~~L~~~~~ 460 (464)
++|.+ ||..+||.+|.+|++.|+. |+.+|++|.. ++.||..||.+++.+|.
T Consensus 448 ~~m~~----~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~ 500 (857)
T PLN03077 448 HNIPE----KDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACA 500 (857)
T ss_pred HhCCC----CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHh
Confidence 99976 7889999999999999974 9999999986 69999999999888775
No 6
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=1.9e-60 Score=465.00 Aligned_cols=416 Identities=13% Similarity=0.114 Sum_probs=395.7
Q ss_pred CCcchhhHHHHhhcCccChhchHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCCchhHHHHHHHHHhhcChHHHHHHhhh
Q 044770 8 EPVGSAFQSWMREGFPVHRGEIFHSINRLRKLQLNKRALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQGEKLFCC 87 (464)
Q Consensus 8 ~~~~~~l~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 87 (464)
..+.+++..|.+.|+.|+..+++.++..|++.|+++.|.++|+.|. .||..+|+.++.+|++.|++++|.++|++
T Consensus 140 ~~a~~l~~~m~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~-----~~~~~t~n~li~~~~~~g~~~~A~~lf~~ 214 (697)
T PLN03081 140 RCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMP-----ERNLASWGTIIGGLVDAGNYREAFALFRE 214 (697)
T ss_pred HHHHHHHHHHHHhCCCcchHHHHHHHHHHhcCCCHHHHHHHHhcCC-----CCCeeeHHHHHHHHHHCcCHHHHHHHHHH
Confidence 3467888899999999999999999999999999999999999984 47999999999999999999999999999
Q ss_pred cCCC--CCchhHHHHHHHHHHhhCcHHHHHHHHHHHHHcCCCCchhhHHHHHHHhcCCCCcccHHHHHHHHHhCCCCCCh
Q 044770 88 IPKD--YQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHV 165 (464)
Q Consensus 88 ~~~~--~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 165 (464)
|... .|+..+|+.++.+|+..|..+.+.+++..+.+.|+.||..+|+.|+++|++.|++++|.++|++|. .+|.
T Consensus 215 M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~~~ 290 (697)
T PLN03081 215 MWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMP----EKTT 290 (697)
T ss_pred HHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCC----CCCh
Confidence 9776 688999999999999999999999999999999999999999999999999999999999999996 5799
Q ss_pred hhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCcHhHHHHHHHHHHhcChhhHHHHHHHHHHhccCCCChhhHHHHHHHH
Q 044770 166 STFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILY 245 (464)
Q Consensus 166 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 245 (464)
.+||+++.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|++++|.+++..|.+.|+.||..+++.++.+|
T Consensus 291 vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y 370 (697)
T PLN03081 291 VAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLY 370 (697)
T ss_pred hHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcChhhHHHHHHHhccCCCCchhhHHHHHHHhhccCChHHHHHHHHHHHhccccCChhhHHHHHHHHHhcCChhHHHH
Q 044770 246 GYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASG 325 (464)
Q Consensus 246 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~ 325 (464)
++.|++++|.++|+.|.+ ++..+|+++|.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|++.|.+++|.+
T Consensus 371 ~k~G~~~~A~~vf~~m~~---~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~ 447 (697)
T PLN03081 371 SKWGRMEDARNVFDRMPR---KNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWE 447 (697)
T ss_pred HHCCCHHHHHHHHHhCCC---CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHH
Confidence 999999999999999865 56778999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHh-CCCCccHHHHHHHHHHHHhcCChHHHHHHHHHhHHHHhhhhhcCCCCcHHHHHHHHHHHHhcCChhhHHHHH
Q 044770 326 LLKEMSM-NGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLF 404 (464)
Q Consensus 326 ~~~~m~~-~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 404 (464)
+|+.|.+ .|+.|+..+|+.++.+|++.|++++|.++++.+ +..|+..+|++|+.+|...|+++.|..++
T Consensus 448 ~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~----------~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~ 517 (697)
T PLN03081 448 IFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRA----------PFKPTVNMWAALLTACRIHKNLELGRLAA 517 (697)
T ss_pred HHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHC----------CCCCCHHHHHHHHHHHHHcCCcHHHHHHH
Confidence 9999986 699999999999999999999999999998876 68899999999999999999999999999
Q ss_pred HHHHHcCCCCc-HHHHHHHHHHHHHcCCC--hhHHHHHHHhCCCCC
Q 044770 405 EELKKANYTKY-TFVYNTLIKAYVKAKIN--DPNLLRRMILGGARP 447 (464)
Q Consensus 405 ~~m~~~~~~p~-~~~~~~li~~~~~~g~~--a~~~~~~m~~~~~~p 447 (464)
+++.+. .|+ ..+|+.|+..|++.|+. |.++++.|++.|+.+
T Consensus 518 ~~l~~~--~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k 561 (697)
T PLN03081 518 EKLYGM--GPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSM 561 (697)
T ss_pred HHHhCC--CCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCcc
Confidence 999754 464 56999999999999984 999999999999863
No 7
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.97 E-value=1.4e-26 Score=237.31 Aligned_cols=415 Identities=14% Similarity=0.026 Sum_probs=227.8
Q ss_pred cChhchHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCCchhHHHHHHHHHhhcChHHHHHHhhhcCCC-CCchhHHHHHH
Q 044770 24 VHRGEIFHSINRLRKLQLNKRALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQGEKLFCCIPKD-YQNELLYNNLV 102 (464)
Q Consensus 24 ~~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~li 102 (464)
.++..+..+...+...|++++|.+.|+.+.+.. +.+...+..+...+...|++++|.+.|+++... +.+..++..+.
T Consensus 463 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~ 540 (899)
T TIGR02917 463 DNASLHNLLGAIYLGKGDLAKAREAFEKALSIE--PDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALA 540 (899)
T ss_pred CCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC--CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHH
Confidence 344444555555555555555555555554421 223334444555555555555555555555443 22344555555
Q ss_pred HHHHhhCcHHHHHHHHHHHHHcCCCCchhhHHHHHHHhcCCCCcccHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChh
Q 044770 103 IACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIE 182 (464)
Q Consensus 103 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 182 (464)
..+.+.|++++|...++++.+.+ +.+...+..+...+...|++++|..+++.+.+.. +.+...|..+..++...|+++
T Consensus 541 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~ 618 (899)
T TIGR02917 541 GLYLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQLKKALAILNEAADAA-PDSPEAWLMLGRAQLAAGDLN 618 (899)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHH
Confidence 55555555555555555555432 2334445555555555555555555555555432 344555555556666666666
Q ss_pred HHHHHHHHHHhCCCCCcHhHHHHHHHHHHhcChhhHHHHHHHHHHhccCCCChhhHHHHHHHHHhhcChhhHHHHHHHhc
Q 044770 183 GLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQ 262 (464)
Q Consensus 183 ~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 262 (464)
+|...|+++.+.. +.+...+..+..++.+.|++++|..+++++.+. .+.+..++..+...+...|++++|.++++.+.
T Consensus 619 ~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 696 (899)
T TIGR02917 619 KAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALEL-KPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQ 696 (899)
T ss_pred HHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 6666666555432 223444555555555566666666666655543 22334555555556666666666666666655
Q ss_pred cCCCCchhhHHHHHHHhhccCChHHHHHHHHHHHhccccCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCccHHHH
Q 044770 263 ELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITY 342 (464)
Q Consensus 263 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~ 342 (464)
...+.+...+..+...+...|++++|.+.|+.+.... |+..++..+..++.+.|++++|.+.++++.+.. +.+...+
T Consensus 697 ~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~ 773 (899)
T TIGR02917 697 KQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRA--PSSQNAIKLHRALLASGNTAEAVKTLEAWLKTH-PNDAVLR 773 (899)
T ss_pred hhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHH
Confidence 5444455555556666666666666666666665533 333455556666666666666666666665542 2345555
Q ss_pred HHHHHHHHhcCChHHHHHHHHHhHHHHhhhhhcCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCcHHHHHHH
Q 044770 343 RHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTL 422 (464)
Q Consensus 343 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l 422 (464)
..+...|...|++++|...|+.+++ ..+++...++.+...+.+.|+ .+|...++++.+.. +-+..++..+
T Consensus 774 ~~la~~~~~~g~~~~A~~~~~~~~~--------~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~-~~~~~~~~~~ 843 (899)
T TIGR02917 774 TALAELYLAQKDYDKAIKHYRTVVK--------KAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKLA-PNIPAILDTL 843 (899)
T ss_pred HHHHHHHHHCcCHHHHHHHHHHHHH--------hCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhC-CCCcHHHHHH
Confidence 5666666666666666666666632 122345556666666666666 55666666666542 1233355666
Q ss_pred HHHHHHcCCC--hhHHHHHHHhCCCCCCHHHHHHHHHH
Q 044770 423 IKAYVKAKIN--DPNLLRRMILGGARPDAETYSLLKLA 458 (464)
Q Consensus 423 i~~~~~~g~~--a~~~~~~m~~~~~~p~~~t~~~L~~~ 458 (464)
...+...|+. |..+++++.+.+.. |..++..+..+
T Consensus 844 ~~~~~~~g~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~ 880 (899)
T TIGR02917 844 GWLLVEKGEADRALPLLRKAVNIAPE-AAAIRYHLALA 880 (899)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCC-ChHHHHHHHHH
Confidence 6666666653 77777777775532 55555544333
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.97 E-value=3.1e-26 Score=234.75 Aligned_cols=390 Identities=12% Similarity=0.054 Sum_probs=188.3
Q ss_pred HHHhhcchHHHHHHHHHHHHcCCCCCCchhHHHHHHHHHhhcChHHHHHHhhhcCCC-CCchhHHHHHHHHHHhhCcHHH
Q 044770 35 RLRKLQLNKRALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQGEKLFCCIPKD-YQNELLYNNLVIACLDKGVIKL 113 (464)
Q Consensus 35 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~li~~~~~~~~~~~ 113 (464)
.+.+.|++++|+++++.+... .+++..++..+...+...|++++|.+.|+++... +.+...+..+...+...|++++
T Consensus 440 ~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~ 517 (899)
T TIGR02917 440 SYLRSGQFDKALAAAKKLEKK--QPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDD 517 (899)
T ss_pred HHHhcCCHHHHHHHHHHHHHh--CCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHCCCHHH
Confidence 333344444444444443331 1223334444444444444444444444444333 1223344444444444444444
Q ss_pred HHHHHHHHHHcCCCCchhhHHHHHHHhcCCCCcccHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHh
Q 044770 114 SLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKR 193 (464)
Q Consensus 114 a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 193 (464)
|.+.|+++.+.+ +.+..++..+...+.+.|+.++|...++++.+.+ +.+...+..+...+.+.|++++|..+++.+.+
T Consensus 518 A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 595 (899)
T TIGR02917 518 AIQRFEKVLTID-PKNLRAILALAGLYLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQLKKALAILNEAAD 595 (899)
T ss_pred HHHHHHHHHHhC-cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 444444444432 2234444444444444555555555555444432 33334444445555555555555555555543
Q ss_pred CCCCCcHhHHHHHHHHHHhcChhhHHHHHHHHHHhccCCCChhhHHHHHHHHHhhcChhhHHHHHHHhccCCCCchhhHH
Q 044770 194 SEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSKSYV 273 (464)
Q Consensus 194 ~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 273 (464)
.. +.+..+|..+..++...|++++|...++.+.+.. +.+...+..+..++...|++++|...++.+....+.+...+.
T Consensus 596 ~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 673 (899)
T TIGR02917 596 AA-PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQI 673 (899)
T ss_pred cC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHH
Confidence 32 2234445555555555555555555555554431 223344445555555555555555555555544444444555
Q ss_pred HHHHHhhccCChHHHHHHHHHHHhccccCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCccHHHHHHHHHHHHhcC
Q 044770 274 LAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSN 353 (464)
Q Consensus 274 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~ 353 (464)
.++..+...|++++|.++++.+.+.. +.+...+..+...+...|++++|...|+.+... .|+..++..+...+.+.|
T Consensus 674 ~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g 750 (899)
T TIGR02917 674 GLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKR--APSSQNAIKLHRALLASG 750 (899)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHCC
Confidence 55555555555555555555555432 234444555555555555555555555555553 233344445555555555
Q ss_pred ChHHHHHHHHHhHHHHhhhhhcCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCcHHHHHHHHHHHHHcCCC-
Q 044770 354 LVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKIN- 432 (464)
Q Consensus 354 ~~~~a~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~- 432 (464)
++++|.+.++.+++ ..+.+...+..+...|.+.|++++|...|+++.+.. +++..+++.+...+...|+.
T Consensus 751 ~~~~A~~~~~~~l~--------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~ 821 (899)
T TIGR02917 751 NTAEAVKTLEAWLK--------THPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKA-PDNAVVLNNLAWLYLELKDPR 821 (899)
T ss_pred CHHHHHHHHHHHHH--------hCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCcHH
Confidence 55555555555531 122244555555556666666666666666665543 23444555555555555553
Q ss_pred hhHHHHHHHh
Q 044770 433 DPNLLRRMIL 442 (464)
Q Consensus 433 a~~~~~~m~~ 442 (464)
|+.++++...
T Consensus 822 A~~~~~~~~~ 831 (899)
T TIGR02917 822 ALEYAEKALK 831 (899)
T ss_pred HHHHHHHHHh
Confidence 5555555554
No 9
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.93 E-value=1.4e-22 Score=186.53 Aligned_cols=299 Identities=11% Similarity=-0.014 Sum_probs=141.8
Q ss_pred HHhhCcHHHHHHHHHHHHHcCCCCchhhHHHHHHHhcCCCCcccHHHHHHHHHhCCCCCC---hhhHHHHHHHHHccCCh
Q 044770 105 CLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPH---VSTFHILMKIEANDHNI 181 (464)
Q Consensus 105 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~ 181 (464)
+...|++++|+..|.++.+.+ +.+..++..+...+...|++++|..+++.+...+..++ ...+..+...|.+.|++
T Consensus 45 ~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~ 123 (389)
T PRK11788 45 FLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLL 123 (389)
T ss_pred HHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCH
Confidence 344455555555555555542 22334555555555555555555555555554321111 13455556666666666
Q ss_pred hHHHHHHHHHHhCCCCCcHhHHHHHHHHHHhcChhhHHHHHHHHHHhccCCCCh----hhHHHHHHHHHhhcChhhHHHH
Q 044770 182 EGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNW----STLDVLIILYGYLAKGKDLERI 257 (464)
Q Consensus 182 ~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~ 257 (464)
++|..+|+++.+.. +++..++..++..+.+.|++++|.+.++.+.+.+..+.. ..+..+...+...|+.++|.+.
T Consensus 124 ~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 202 (389)
T PRK11788 124 DRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARAL 202 (389)
T ss_pred HHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHH
Confidence 66666666665432 234555666666666666666666666666554322211 1112222333333333333333
Q ss_pred HHHhccCCCCchhhHHHHHHHhhccCChHHHHHHHHHHHhccccCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCc
Q 044770 258 WATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKP 337 (464)
Q Consensus 258 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p 337 (464)
++.+.+..+.....+..+...+.+.|++++|.++|+++.+.+......+++.++.+|...|++++|...++++.+. .|
T Consensus 203 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~--~p 280 (389)
T PRK11788 203 LKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE--YP 280 (389)
T ss_pred HHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CC
Confidence 3333332222222344444455555555555555555544221111233444555555555555555555555442 23
Q ss_pred cHHHHHHHHHHHHhcCChHHHHHHHHHhHHHHhhhhhcCCCCcHHHHHHHHHHHHh---cCChhhHHHHHHHHHHcCCCC
Q 044770 338 NAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAE---KGDVGNAENLFEELKKANYTK 414 (464)
Q Consensus 338 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~~~~p 414 (464)
+...+..+...+.+.|++++|..+++.++ ...|+..+++.++..+.. .|+..++..++++|.+.++.|
T Consensus 281 ~~~~~~~la~~~~~~g~~~~A~~~l~~~l---------~~~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~ 351 (389)
T PRK11788 281 GADLLLALAQLLEEQEGPEAAQALLREQL---------RRHPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKR 351 (389)
T ss_pred CchHHHHHHHHHHHhCCHHHHHHHHHHHH---------HhCcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhC
Confidence 33344444445555555555555555442 123444444444444443 234555555555555444444
Q ss_pred cH
Q 044770 415 YT 416 (464)
Q Consensus 415 ~~ 416 (464)
++
T Consensus 352 ~p 353 (389)
T PRK11788 352 KP 353 (389)
T ss_pred CC
Confidence 43
No 10
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.93 E-value=2.2e-22 Score=185.34 Aligned_cols=300 Identities=11% Similarity=0.032 Sum_probs=248.7
Q ss_pred HHHhcCCCCcccHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCc---HhHHHHHHHHHHhc
Q 044770 137 IILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPN---EVSYCILATAHAVA 213 (464)
Q Consensus 137 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~---~~~~~~li~~~~~~ 213 (464)
...+...|++++|...|+++.+.+ +.+..++..+...+...|++++|..+++.+...+..++ ...+..+...|.+.
T Consensus 42 g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~ 120 (389)
T PRK11788 42 GLNFLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKA 120 (389)
T ss_pred HHHHHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHC
Confidence 345677899999999999999875 45667899999999999999999999999987542222 25678889999999
Q ss_pred ChhhHHHHHHHHHHhccCCCChhhHHHHHHHHHhhcChhhHHHHHHHhccCCCCc-----hhhHHHHHHHhhccCChHHH
Q 044770 214 RLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVR-----SKSYVLAIEAFGRIAQVSRA 288 (464)
Q Consensus 214 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~a 288 (464)
|++++|..+|+++.+. .+.+..++..++..+...|++++|.+.++.+....+.+ ...+..+...+.+.|++++|
T Consensus 121 g~~~~A~~~~~~~l~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 199 (389)
T PRK11788 121 GLLDRAEELFLQLVDE-GDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAA 199 (389)
T ss_pred CCHHHHHHHHHHHHcC-CcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHH
Confidence 9999999999999876 34567889999999999999999999999987743332 12355677888899999999
Q ss_pred HHHHHHHHhccccCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCccHHHHHHHHHHHHhcCChHHHHHHHHHhHHH
Q 044770 289 EELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKL 368 (464)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 368 (464)
...|+++.+.. +.+...+..+...+.+.|++++|.++++++.+.+......++..+..+|...|++++|...++.+.+
T Consensus 200 ~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~- 277 (389)
T PRK11788 200 RALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALE- 277 (389)
T ss_pred HHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-
Confidence 99999998743 3356678888999999999999999999999854333346788899999999999999999999842
Q ss_pred HhhhhhcCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCcHHHHHHHHHHHHH---cCC--ChhHHHHHHHhC
Q 044770 369 ITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVK---AKI--NDPNLLRRMILG 443 (464)
Q Consensus 369 ~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~---~g~--~a~~~~~~m~~~ 443 (464)
..|+...+..++..+.+.|++++|..+++++.+. .|+..+++.++..+.. .|+ .++.++++|.+.
T Consensus 278 --------~~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~ 347 (389)
T PRK11788 278 --------EYPGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGE 347 (389)
T ss_pred --------hCCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHH
Confidence 3566666789999999999999999999998876 4899999999988885 334 489999999998
Q ss_pred CCCCCHH
Q 044770 444 GARPDAE 450 (464)
Q Consensus 444 ~~~p~~~ 450 (464)
++.||+.
T Consensus 348 ~~~~~p~ 354 (389)
T PRK11788 348 QLKRKPR 354 (389)
T ss_pred HHhCCCC
Confidence 8887765
No 11
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.90 E-value=6.3e-19 Score=170.79 Aligned_cols=399 Identities=10% Similarity=-0.016 Sum_probs=290.2
Q ss_pred hHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCCchhHHHHHHHHHhhcChHHHHHHhhhcCCCCC-chhHHHHHHHHHHh
Q 044770 29 IFHSINRLRKLQLNKRALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQGEKLFCCIPKDYQ-NELLYNNLVIACLD 107 (464)
Q Consensus 29 ~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~li~~~~~ 107 (464)
+......+.+.|+++.|+..|+..++ ..|+...|..+..+|.+.|++++|+..++...+..| +...|..+..+|..
T Consensus 130 ~k~~G~~~~~~~~~~~Ai~~y~~al~---~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~~ 206 (615)
T TIGR00990 130 LKEKGNKAYRNKDFNKAIKLYSKAIE---CKPDPVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDG 206 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHh---cCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 44566778889999999999999987 457788899999999999999999999999887744 57789999999999
Q ss_pred hCcHHHHHHHHHHHHHcCCCCchhhHHHHHHHhcCCCCcccHHHHHHHHHhC----------------------------
Q 044770 108 KGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKAD---------------------------- 159 (464)
Q Consensus 108 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---------------------------- 159 (464)
.|++++|+..|......+-..+.. ...++..+.. ..+........+.
T Consensus 207 lg~~~eA~~~~~~~~~~~~~~~~~-~~~~~~~~l~----~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (615)
T TIGR00990 207 LGKYADALLDLTASCIIDGFRNEQ-SAQAVERLLK----KFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLE 281 (615)
T ss_pred cCCHHHHHHHHHHHHHhCCCccHH-HHHHHHHHHH----HHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhh
Confidence 999999998887665432111111 1111110000 0000000000000
Q ss_pred ---CCCCCh-hhHHHHHHH---HHccCChhHHHHHHHHHHhCC-CCC-cHhHHHHHHHHHHhcChhhHHHHHHHHHHhcc
Q 044770 160 ---KVAPHV-STFHILMKI---EANDHNIEGLMKVYSDMKRSE-VEP-NEVSYCILATAHAVARLYTVAETYVEALEKSM 230 (464)
Q Consensus 160 ---~~~~~~-~~~~~l~~~---~~~~~~~~~a~~~~~~m~~~~-~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 230 (464)
...+.. ..+..+... ....+++++|.+.|+...+.+ ..| ....|..+...+...|++++|+..+++.....
T Consensus 282 ~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~ 361 (615)
T TIGR00990 282 DSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD 361 (615)
T ss_pred cccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 001110 011111111 123468999999999998764 234 34567888888889999999999999998752
Q ss_pred CCCChhhHHHHHHHHHhhcChhhHHHHHHHhccCCCCchhhHHHHHHHhhccCChHHHHHHHHHHHhccccCChhhHHHH
Q 044770 231 TGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSV 310 (464)
Q Consensus 231 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 310 (464)
+.....|..+...+...|++++|...++......+.+...+..+...+...|++++|...|++..+.. +.+...+..+
T Consensus 362 -P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~~~~~~l 439 (615)
T TIGR00990 362 -PRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDFIFSHIQL 439 (615)
T ss_pred -CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccCHHHHHHH
Confidence 23456788888999999999999999999988777778889999999999999999999999999843 3467778888
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCc-cHHHHHHHHHHHHhcCChHHHHHHHHHhHHHHhhhhhcCCCCcH-HHHHHHH
Q 044770 311 ISVYCKNGFIDKASGLLKEMSMNGCKP-NAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWL-ETTLSII 388 (464)
Q Consensus 311 i~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~p~~-~~~~~li 388 (464)
...+.+.|++++|+..|++..+. .| +...++.+...+...|++++|+..|+.++++... .....++. ..++...
T Consensus 440 a~~~~~~g~~~eA~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~--~~~~~~~~~~l~~~a~ 515 (615)
T TIGR00990 440 GVTQYKEGSIASSMATFRRCKKN--FPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKE--TKPMYMNVLPLINKAL 515 (615)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCc--cccccccHHHHHHHHH
Confidence 99999999999999999999874 34 5678888889999999999999999999643211 00111111 1122233
Q ss_pred HHHHhcCChhhHHHHHHHHHHcCCCCc-HHHHHHHHHHHHHcCCC--hhHHHHHHHhC
Q 044770 389 EIFAEKGDVGNAENLFEELKKANYTKY-TFVYNTLIKAYVKAKIN--DPNLLRRMILG 443 (464)
Q Consensus 389 ~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~--a~~~~~~m~~~ 443 (464)
..+...|++++|.+++++..+.. |+ ...+..+...+.+.|+. |+.+|++..+.
T Consensus 516 ~~~~~~~~~~eA~~~~~kAl~l~--p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 516 ALFQWKQDFIEAENLCEKALIID--PECDIAVATMAQLLLQQGDVDEALKLFERAAEL 571 (615)
T ss_pred HHHHHhhhHHHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 33445799999999999988764 44 44799999999999984 88999888764
No 12
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.90 E-value=2.9e-19 Score=172.46 Aligned_cols=371 Identities=9% Similarity=-0.059 Sum_probs=286.7
Q ss_pred hhchHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCCchhHHHHHHHHHhhcChHHHHHHhhhcCCCCC-chhHHHHHHHH
Q 044770 26 RGEIFHSINRLRKLQLNKRALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQGEKLFCCIPKDYQ-NELLYNNLVIA 104 (464)
Q Consensus 26 ~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~li~~ 104 (464)
...+..++..+.+.|+++.|+.+++......+ -+...+..++......|++++|...|+++....| +...+..+...
T Consensus 42 ~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p--~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~ 119 (656)
T PRK15174 42 EQNIILFAIACLRKDETDVGLTLLSDRVLTAK--NGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASV 119 (656)
T ss_pred ccCHHHHHHHHHhcCCcchhHHHhHHHHHhCC--CchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHH
Confidence 34466678888999999999999999988543 3344566666777789999999999999988744 56788899999
Q ss_pred HHhhCcHHHHHHHHHHHHHcCCCCchhhHHHHHHHhcCCCCcccHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhHH
Q 044770 105 CLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGL 184 (464)
Q Consensus 105 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 184 (464)
+...|++++|+..+++..+.. +.+...+..+...+...|++++|...++.+.... +.+...+..+ ..+...|++++|
T Consensus 120 l~~~g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~-P~~~~a~~~~-~~l~~~g~~~eA 196 (656)
T PRK15174 120 LLKSKQYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQEV-PPRGDMIATC-LSFLNKSRLPED 196 (656)
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-CCCHHHHHHH-HHHHHcCCHHHH
Confidence 999999999999999999863 4457788889999999999999999999887654 2333344333 347889999999
Q ss_pred HHHHHHHHhCCCCCcHhHHHHHHHHHHhcChhhHHHHHHHHHHhccCCCChhhHHHHHHHHHhhcChhh----HHHHHHH
Q 044770 185 MKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKD----LERIWAT 260 (464)
Q Consensus 185 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~----a~~~~~~ 260 (464)
...++.+.+....++...+..+..++.+.|++++|...++++.... +.+...+..+...+...|+.++ |...++.
T Consensus 197 ~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~ 275 (656)
T PRK15174 197 HDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRH 275 (656)
T ss_pred HHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHH
Confidence 9999998776433445555666778889999999999999998763 4467788889999999999886 7899999
Q ss_pred hccCCCCchhhHHHHHHHhhccCChHHHHHHHHHHHhccccCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCccHH
Q 044770 261 VQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAI 340 (464)
Q Consensus 261 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ 340 (464)
.....+.+...+..+...+...|++++|...+++..+.. +.+...+..+..++.+.|++++|+..|+++.+. .|+..
T Consensus 276 Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~-P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~--~P~~~ 352 (656)
T PRK15174 276 ALQFNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATH-PDLPYVRAMYARALRQVGQYTAASDEFVQLARE--KGVTS 352 (656)
T ss_pred HHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--Cccch
Confidence 888777788889999999999999999999999998843 335667888899999999999999999999884 45543
Q ss_pred H-HHHHHHHHHhcCChHHHHHHHHHhHHHHhhhhhcCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHH
Q 044770 341 T-YRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELK 408 (464)
Q Consensus 341 ~-~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 408 (464)
. +..+..++...|+.++|...|+.+++..... .-.+-......+-.++...+..++....+.++.
T Consensus 353 ~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~---~~~~~~ea~~~~~~~~~~~~~~~~~~~W~~~~~ 418 (656)
T PRK15174 353 KWNRYAAAALLQAGKTSEAESVFEHYIQARASH---LPQSFEEGLLALDGQISAVNLPPERLDWAWEVA 418 (656)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhh---chhhHHHHHHHHHHHHHhcCCccchhhHHHHHh
Confidence 3 3445667889999999999999996542211 011111233344455555555555445555554
No 13
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.90 E-value=1.6e-19 Score=159.79 Aligned_cols=401 Identities=16% Similarity=0.102 Sum_probs=304.3
Q ss_pred hchHHHHHHHHhhcchHHHHHHHHHHHHcCCCC--------------------------------CCchhHHHHHHHHHh
Q 044770 27 GEIFHSINRLRKLQLNKRALEVMEWVIRERPYR--------------------------------PKELDYSYLLEFTIK 74 (464)
Q Consensus 27 ~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~--------------------------------~~~~~~~~l~~~~~~ 74 (464)
.....+.....+.|++++|++....+-++.+.. --..+|+.+.+.+-.
T Consensus 49 ~~~l~lah~~yq~gd~~~a~~h~nmv~~~d~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~~q~ae~ysn~aN~~ke 128 (966)
T KOG4626|consen 49 DDRLELAHRLYQGGDYKQAEKHCNMVGQEDPTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKNPQGAEAYSNLANILKE 128 (966)
T ss_pred hhHHHHHHHHHhccCHHHHHHHHhHhhccCCCcccceeeehhhhhcccchhhhhhhhhhhhhccchHHHHHHHHHHHHHH
Confidence 346677888889999999998877665432111 112346667777777
Q ss_pred hcChHHHHHHhhhcCCCCC-chhHHHHHHHHHHhhCcHHHHHHHHHHHHHcCCCCchhh-HHHHHHHhcCCCCcccHHHH
Q 044770 75 NHGISQGEKLFCCIPKDYQ-NELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLV-FNRLIILNSSPGRRKTIPNI 152 (464)
Q Consensus 75 ~g~~~~a~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~-~~~l~~~~~~~~~~~~a~~~ 152 (464)
.|++++|+.+++.+.+..| ....|..+..++...|+.+.|.+.|.+.++. .|+... .+.+...+-..|+..+|...
T Consensus 129 rg~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~lgnLlka~Grl~ea~~c 206 (966)
T KOG4626|consen 129 RGQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSDLGNLLKAEGRLEEAKAC 206 (966)
T ss_pred hchHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--CcchhhhhcchhHHHHhhcccchhHHH
Confidence 7888888888877776644 5677778888888888888888887777764 354332 33344445557777777777
Q ss_pred HHHHHhCCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCc-HhHHHHHHHHHHhcChhhHHHHHHHHHHhccC
Q 044770 153 LRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPN-EVSYCILATAHAVARLYTVAETYVEALEKSMT 231 (464)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~ 231 (464)
+.+.++.. +-=...|+.|.-.+...|+...|+..|++..+. .|+ ...|-.|...|...+.+++|...|.+.... .
T Consensus 207 YlkAi~~q-p~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl--dP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~l-r 282 (966)
T KOG4626|consen 207 YLKAIETQ-PCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL--DPNFLDAYINLGNVYKEARIFDRAVSCYLRALNL-R 282 (966)
T ss_pred HHHHHhhC-CceeeeehhcchHHhhcchHHHHHHHHHHhhcC--CCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhc-C
Confidence 77776542 233456777887888888888888888888765 444 467888888888888888888888887664 2
Q ss_pred CCChhhHHHHHHHHHhhcChhhHHHHHHHhccCCCCchhhHHHHHHHhhccCChHHHHHHHHHHHhccccCChhhHHHHH
Q 044770 232 GNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVI 311 (464)
Q Consensus 232 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li 311 (464)
+....++..+...|...|..+.|+..+++..+..+.-...|+.|..++-..|++.+|.+.+.+..... +-.....+.|.
T Consensus 283 pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~-p~hadam~NLg 361 (966)
T KOG4626|consen 283 PNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLC-PNHADAMNNLG 361 (966)
T ss_pred CcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhC-CccHHHHHHHH
Confidence 33456677777788889999999999999888777777789999999999999999999999888743 22456788899
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCCCcc-HHHHHHHHHHHHhcCChHHHHHHHHHhHHHHhhhhhcCCCCc-HHHHHHHHH
Q 044770 312 SVYCKNGFIDKASGLLKEMSMNGCKPN-AITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPW-LETTLSIIE 389 (464)
Q Consensus 312 ~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~p~-~~~~~~li~ 389 (464)
..|...|.+++|..+|....+ +.|. ....+.|...|-.+|++++|+..++++ ..+.|+ ...|+.+..
T Consensus 362 ni~~E~~~~e~A~~ly~~al~--v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykea---------lrI~P~fAda~~NmGn 430 (966)
T KOG4626|consen 362 NIYREQGKIEEATRLYLKALE--VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEA---------LRIKPTFADALSNMGN 430 (966)
T ss_pred HHHHHhccchHHHHHHHHHHh--hChhhhhhhhhHHHHHHhcccHHHHHHHHHHH---------HhcCchHHHHHHhcch
Confidence 999999999999999998887 5565 456788888899999999999999988 467776 467889999
Q ss_pred HHHhcCChhhHHHHHHHHHHcCCCCcHH-HHHHHHHHHHHcCCC--hhHHHHHHHhCCCCCCH
Q 044770 390 IFAEKGDVGNAENLFEELKKANYTKYTF-VYNTLIKAYVKAKIN--DPNLLRRMILGGARPDA 449 (464)
Q Consensus 390 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~-~~~~li~~~~~~g~~--a~~~~~~m~~~~~~p~~ 449 (464)
.|-..|+.+.|.+.+.+....+ |.-. ..+.|...|-.+|+. |++-++...+ ++||.
T Consensus 431 t~ke~g~v~~A~q~y~rAI~~n--Pt~AeAhsNLasi~kDsGni~~AI~sY~~aLk--lkPDf 489 (966)
T KOG4626|consen 431 TYKEMGDVSAAIQCYTRAIQIN--PTFAEAHSNLASIYKDSGNIPEAIQSYRTALK--LKPDF 489 (966)
T ss_pred HHHHhhhHHHHHHHHHHHHhcC--cHHHHHHhhHHHHhhccCCcHHHHHHHHHHHc--cCCCC
Confidence 9999999999999998888743 6544 788888999999984 7888888776 55664
No 14
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.89 E-value=1.5e-20 Score=166.20 Aligned_cols=382 Identities=13% Similarity=0.056 Sum_probs=321.0
Q ss_pred CccChhchHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCCchhHHHHHHHHHhhcChHHHHHHhhhcCCCCCchhH-HHH
Q 044770 22 FPVHRGEIFHSINRLRKLQLNKRALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQGEKLFCCIPKDYQNELL-YNN 100 (464)
Q Consensus 22 ~~~~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~ 100 (464)
.+.-..+|..+...+...|+++.|+.+++.+++.. +.....|..+..++...|+.+.|.+.|.+..+..|+... .+.
T Consensus 112 ~~q~ae~ysn~aN~~kerg~~~~al~~y~~aiel~--p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~ 189 (966)
T KOG4626|consen 112 NPQGAEAYSNLANILKERGQLQDALALYRAAIELK--PKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCARSD 189 (966)
T ss_pred cchHHHHHHHHHHHHHHhchHHHHHHHHHHHHhcC--chhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcc
Confidence 34456678889999999999999999999999843 235678999999999999999999999998887665443 344
Q ss_pred HHHHHHhhCcHHHHHHHHHHHHHcCCCCchhhHHHHHHHhcCCCCcccHHHHHHHHHhCCCCCChhhHHHHHHHHHccCC
Q 044770 101 LVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHN 180 (464)
Q Consensus 101 li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 180 (464)
+....-..|+..+|...|.+.++.. +--...|+.|...+...|+...|+..|++..+.. +.-...|-.|...|...+.
T Consensus 190 lgnLlka~Grl~ea~~cYlkAi~~q-p~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkld-P~f~dAYiNLGnV~ke~~~ 267 (966)
T KOG4626|consen 190 LGNLLKAEGRLEEAKACYLKAIETQ-PCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLD-PNFLDAYINLGNVYKEARI 267 (966)
T ss_pred hhHHHHhhcccchhHHHHHHHHhhC-CceeeeehhcchHHhhcchHHHHHHHHHHhhcCC-CcchHHHhhHHHHHHHHhc
Confidence 5555667899999999999888753 2235679999999999999999999999998753 3335688889999999999
Q ss_pred hhHHHHHHHHHHhCCCCCc-HhHHHHHHHHHHhcChhhHHHHHHHHHHhccCCCC-hhhHHHHHHHHHhhcChhhHHHHH
Q 044770 181 IEGLMKVYSDMKRSEVEPN-EVSYCILATAHAVARLYTVAETYVEALEKSMTGNN-WSTLDVLIILYGYLAKGKDLERIW 258 (464)
Q Consensus 181 ~~~a~~~~~~m~~~~~~p~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~ 258 (464)
+++|...|...... .|+ ...+..+...|...|..+.|+..|++..+. .|+ +..|+.+..++-..|+..+|.+.+
T Consensus 268 ~d~Avs~Y~rAl~l--rpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~--~P~F~~Ay~NlanALkd~G~V~ea~~cY 343 (966)
T KOG4626|consen 268 FDRAVSCYLRALNL--RPNHAVAHGNLACIYYEQGLLDLAIDTYKRALEL--QPNFPDAYNNLANALKDKGSVTEAVDCY 343 (966)
T ss_pred chHHHHHHHHHHhc--CCcchhhccceEEEEeccccHHHHHHHHHHHHhc--CCCchHHHhHHHHHHHhccchHHHHHHH
Confidence 99999999988765 555 566777888899999999999999999874 343 678999999999999999999999
Q ss_pred HHhccCCCCchhhHHHHHHHhhccCChHHHHHHHHHHHhccccCC-hhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCc
Q 044770 259 ATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKA-TEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKP 337 (464)
Q Consensus 259 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p 337 (464)
.....-.+....+.+.|...|...|.++.|..+|....+- .|. ...++.|...|-++|++++|+..|++.++ +.|
T Consensus 344 nkaL~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~v--~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr--I~P 419 (966)
T KOG4626|consen 344 NKALRLCPNHADAMNNLGNIYREQGKIEEATRLYLKALEV--FPEFAAAHNNLASIYKQQGNLDDAIMCYKEALR--IKP 419 (966)
T ss_pred HHHHHhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHhh--ChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh--cCc
Confidence 9999877777788999999999999999999999998873 233 45789999999999999999999999998 788
Q ss_pred cH-HHHHHHHHHHHhcCChHHHHHHHHHhHHHHhhhhhcCCCCc-HHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCc
Q 044770 338 NA-ITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPW-LETTLSIIEIFAEKGDVGNAENLFEELKKANYTKY 415 (464)
Q Consensus 338 ~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~ 415 (464)
+. ..|+.+...|-..|+.+.|.+.+.++ ..+.|. ...++.|...|-..|++.+|.+-+++..+. +||
T Consensus 420 ~fAda~~NmGnt~ke~g~v~~A~q~y~rA---------I~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLkl--kPD 488 (966)
T KOG4626|consen 420 TFADALSNMGNTYKEMGDVSAAIQCYTRA---------IQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKL--KPD 488 (966)
T ss_pred hHHHHHHhcchHHHHhhhHHHHHHHHHHH---------HhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHcc--CCC
Confidence 74 68899999999999999999999998 456774 456789999999999999999999999874 577
Q ss_pred HH-HHHHHHHHH
Q 044770 416 TF-VYNTLIKAY 426 (464)
Q Consensus 416 ~~-~~~~li~~~ 426 (464)
.. .|..++.+.
T Consensus 489 fpdA~cNllh~l 500 (966)
T KOG4626|consen 489 FPDAYCNLLHCL 500 (966)
T ss_pred CchhhhHHHHHH
Confidence 66 555555544
No 15
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.89 E-value=2.5e-19 Score=172.99 Aligned_cols=377 Identities=9% Similarity=-0.030 Sum_probs=290.3
Q ss_pred HHhhcchHHHHHHHHHHHHcCCCC-CCchhHHHHHHHHHhhcChHHHHHHhhhcCCCCC-chhHHHHHHHHHHhhCcHHH
Q 044770 36 LRKLQLNKRALEVMEWVIRERPYR-PKELDYSYLLEFTIKNHGISQGEKLFCCIPKDYQ-NELLYNNLVIACLDKGVIKL 113 (464)
Q Consensus 36 ~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~ 113 (464)
+.++.+|+.-.-+|....++..-. -+......++..+.+.|++++|..+++......| +...+..++.+....|++++
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~ 94 (656)
T PRK15174 15 LLKQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDA 94 (656)
T ss_pred hhhhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHH
Confidence 456677776666665543321111 1223345566778899999999999999877744 55677777788888999999
Q ss_pred HHHHHHHHHHcCCCCchhhHHHHHHHhcCCCCcccHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHh
Q 044770 114 SLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKR 193 (464)
Q Consensus 114 a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 193 (464)
|+..|+++.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++.+..
T Consensus 95 A~~~l~~~l~~~-P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~ 172 (656)
T PRK15174 95 VLQVVNKLLAVN-VCQPEDVLLVASVLLKSKQYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQ 172 (656)
T ss_pred HHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHH
Confidence 999999999864 4456788888899999999999999999998863 55677888899999999999999999998876
Q ss_pred CCCCCcHhHHHHHHHHHHhcChhhHHHHHHHHHHhccCCCChhhHHHHHHHHHhhcChhhHHHHHHHhccCCCCchhhHH
Q 044770 194 SEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSKSYV 273 (464)
Q Consensus 194 ~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 273 (464)
.... +...+..+ ..+...|++++|...++.+......++......+..++...|+.++|...++......+.+...+.
T Consensus 173 ~~P~-~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~ 250 (656)
T PRK15174 173 EVPP-RGDMIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRR 250 (656)
T ss_pred hCCC-CHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHH
Confidence 5322 23333333 347889999999999999877644444555566678889999999999999999887777788899
Q ss_pred HHHHHhhccCChHH----HHHHHHHHHhccccCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcc-HHHHHHHHHH
Q 044770 274 LAIEAFGRIAQVSR----AEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPN-AITYRHLALG 348 (464)
Q Consensus 274 ~l~~~~~~~g~~~~----a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~ 348 (464)
.+...|...|++++ |...|++..+.. +.+...+..+...+...|++++|...+++..+. .|+ ...+..+..+
T Consensus 251 ~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l--~P~~~~a~~~La~~ 327 (656)
T PRK15174 251 SLGLAYYQSGRSREAKLQAAEHWRHALQFN-SDNVRIVTLYADALIRTGQNEKAIPLLQQSLAT--HPDLPYVRAMYARA 327 (656)
T ss_pred HHHHHHHHcCCchhhHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHH
Confidence 99999999999986 899999998843 346778999999999999999999999999985 444 5567777888
Q ss_pred HHhcCChHHHHHHHHHhHHHHhhhhhcCCCCcH-HHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCcHHHHHHHHHHHH
Q 044770 349 CFKSNLVEEGFKALELGMKLITTKKVRSSTPWL-ETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYV 427 (464)
Q Consensus 349 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~ 427 (464)
+...|++++|...++.+.+ ..|+. ..+..+..++...|+.++|...|++..+....--...|...+..|.
T Consensus 328 l~~~G~~~eA~~~l~~al~---------~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~~~~~~~ea~~~~~ 398 (656)
T PRK15174 328 LRQVGQYTAASDEFVQLAR---------EKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARASHLPQSFEEGLLALD 398 (656)
T ss_pred HHHCCCHHHHHHHHHHHHH---------hCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhhchhhHHHHHHHHH
Confidence 9999999999999999842 24443 3344467788999999999999999887532111224444444443
Q ss_pred H
Q 044770 428 K 428 (464)
Q Consensus 428 ~ 428 (464)
+
T Consensus 399 ~ 399 (656)
T PRK15174 399 G 399 (656)
T ss_pred H
Confidence 3
No 16
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.89 E-value=5.3e-19 Score=182.34 Aligned_cols=393 Identities=10% Similarity=-0.026 Sum_probs=253.9
Q ss_pred HHHHHhhcchHHHHHHHHHHHHcCCCCCCchhHHHHHHHHHhhcChHHHHHHhhhcCCCCCch---hHHH----------
Q 044770 33 INRLRKLQLNKRALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQGEKLFCCIPKDYQNE---LLYN---------- 99 (464)
Q Consensus 33 l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~~---------- 99 (464)
...+...|++++|+..|+...+.. +.+...+..+...+.+.|++++|...|++..+..|+. ..|.
T Consensus 276 G~~~~~~g~~~~A~~~l~~aL~~~--P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~ 353 (1157)
T PRK11447 276 GLAAVDSGQGGKAIPELQQAVRAN--PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWL 353 (1157)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHH
Confidence 445667899999999999998843 3366788888899999999999999999877653422 1222
Q ss_pred --HHHHHHHhhCcHHHHHHHHHHHHHcCCCCchhhHHHHHHHhcCCCCcccHHHHHHHHHhCCCCCChhhHHHHHHHH--
Q 044770 100 --NLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIE-- 175 (464)
Q Consensus 100 --~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-- 175 (464)
.....+.+.|++++|+..|++..+.. +.+...+..+...+...|++++|.+.|+++.+.. +.+...+..+...+
T Consensus 354 ~~~~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~~L~~l~~~ 431 (1157)
T PRK11447 354 LIQQGDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTNAVRGLANLYRQ 431 (1157)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHh
Confidence 22345778899999999999999864 3456677788889999999999999999998753 33344444444444
Q ss_pred ----------------------------------------HccCChhHHHHHHHHHHhCCCCCcHhHHHHHHHHHHhcCh
Q 044770 176 ----------------------------------------ANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARL 215 (464)
Q Consensus 176 ----------------------------------------~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~ 215 (464)
...|++++|.+.|++..+... -+...+..+...|.+.|+
T Consensus 432 ~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P-~~~~~~~~LA~~~~~~G~ 510 (1157)
T PRK11447 432 QSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDP-GSVWLTYRLAQDLRQAGQ 510 (1157)
T ss_pred cCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCC
Confidence 234444555555544444311 123333444444555555
Q ss_pred hhHHHHHHHHHHhccCCCChhhHHHHHHHHHhhcChhhHHHHHHHhccCCCCch----------hhHHHHHHHhhccCCh
Q 044770 216 YTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRS----------KSYVLAIEAFGRIAQV 285 (464)
Q Consensus 216 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----------~~~~~l~~~~~~~g~~ 285 (464)
+++|...++++.+.. +.+...+..+...+...++.++|...++.+........ ..+..+...+...|+.
T Consensus 511 ~~~A~~~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~ 589 (1157)
T PRK11447 511 RSQADALMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKE 589 (1157)
T ss_pred HHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCH
Confidence 555555555544321 11222222223333444445555554444332111000 0112234455566667
Q ss_pred HHHHHHHHHHHhccccCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCccHHHHHHHHHHHHhcCChHHHHHHHHHh
Q 044770 286 SRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELG 365 (464)
Q Consensus 286 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 365 (464)
++|..+++. .+.+...+..+...+.+.|++++|+..|++..+.. +.+...+..+...+...|++++|.+.++.+
T Consensus 590 ~eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~-P~~~~a~~~la~~~~~~g~~~eA~~~l~~l 663 (1157)
T PRK11447 590 AEAEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTRE-PGNADARLGLIEVDIAQGDLAAARAQLAKL 663 (1157)
T ss_pred HHHHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 777666651 23455667778888999999999999999998853 225678888888999999999999999987
Q ss_pred HHHHhhhhhcCCCC-cHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCC--CC---cHHHHHHHHHHHHHcCCC--hhHHH
Q 044770 366 MKLITTKKVRSSTP-WLETTLSIIEIFAEKGDVGNAENLFEELKKANY--TK---YTFVYNTLIKAYVKAKIN--DPNLL 437 (464)
Q Consensus 366 ~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~--~p---~~~~~~~li~~~~~~g~~--a~~~~ 437 (464)
. ...| +...+..+..++...|++++|.++++++....- +| +...+..+...+...|+. |+..|
T Consensus 664 l---------~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y 734 (1157)
T PRK11447 664 P---------ATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETY 734 (1157)
T ss_pred h---------ccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 3 2333 345566788888899999999999999886432 12 223566667777888874 88888
Q ss_pred HHHH-hCCCC
Q 044770 438 RRMI-LGGAR 446 (464)
Q Consensus 438 ~~m~-~~~~~ 446 (464)
++.. ..|+.
T Consensus 735 ~~Al~~~~~~ 744 (1157)
T PRK11447 735 KDAMVASGIT 744 (1157)
T ss_pred HHHHhhcCCC
Confidence 7664 34554
No 17
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.88 E-value=3.5e-18 Score=176.28 Aligned_cols=399 Identities=11% Similarity=0.015 Sum_probs=293.3
Q ss_pred CcchhhHHHHhhcCccChhchHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCCchhH------------HHHHHHHHhhc
Q 044770 9 PVGSAFQSWMREGFPVHRGEIFHSINRLRKLQLNKRALEVMEWVIRERPYRPKELDY------------SYLLEFTIKNH 76 (464)
Q Consensus 9 ~~~~~l~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~------------~~l~~~~~~~g 76 (464)
.+...++...+. .|-+...+..+...+.+.|++++|+..|+...+..+-.+....+ ......+.+.|
T Consensus 287 ~A~~~l~~aL~~-~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g 365 (1157)
T PRK11447 287 KAIPELQQAVRA-NPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKAN 365 (1157)
T ss_pred HHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCC
Confidence 344555555543 34467788889999999999999999999998744322222222 12244677899
Q ss_pred ChHHHHHHhhhcCCCCC-chhHHHHHHHHHHhhCcHHHHHHHHHHHHHcCCCCchhhHHHH-------------------
Q 044770 77 GISQGEKLFCCIPKDYQ-NELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRL------------------- 136 (464)
Q Consensus 77 ~~~~a~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l------------------- 136 (464)
++++|...|+++....| +...+..+...+...|++++|++.|++..+.. +.+...+..+
T Consensus 366 ~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~~L~~l~~~~~~~~A~~~l~~l 444 (1157)
T PRK11447 366 NLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTNAVRGLANLYRQQSPEKALAFIASL 444 (1157)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCHHHHHHHHHhC
Confidence 99999999999887744 56778889999999999999999999998753 2223333222
Q ss_pred -----------------------HHHhcCCCCcccHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHh
Q 044770 137 -----------------------IILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKR 193 (464)
Q Consensus 137 -----------------------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 193 (464)
...+...|++++|.+.|++..+.. +-+...+..+...|.+.|++++|...++++.+
T Consensus 445 ~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~ 523 (1157)
T PRK11447 445 SASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQDLRQAGQRSQADALMRRLAQ 523 (1157)
T ss_pred CHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 233446789999999999998764 44566778899999999999999999999987
Q ss_pred CCCCCcHhHHHHHHHHHHhcChhhHHHHHHHHHHhccCCCCh---------hhHHHHHHHHHhhcChhhHHHHHHHhccC
Q 044770 194 SEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNW---------STLDVLIILYGYLAKGKDLERIWATVQEL 264 (464)
Q Consensus 194 ~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~---------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 264 (464)
.. +.+...+..+...+...++.++|...++.+......++. ..+......+...|+.++|.++++.
T Consensus 524 ~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~---- 598 (1157)
T PRK11447 524 QK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQ---- 598 (1157)
T ss_pred cC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHh----
Confidence 53 224444444555567889999999999876443222221 1223456678889999999999882
Q ss_pred CCCchhhHHHHHHHhhccCChHHHHHHHHHHHhccccCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCc-cHHHHH
Q 044770 265 PNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKP-NAITYR 343 (464)
Q Consensus 265 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~ 343 (464)
.+.+...+..+...+.+.|++++|...|+...+. .+.+...+..++..|...|++++|++.++...+. .| +.....
T Consensus 599 ~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~-~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~--~p~~~~~~~ 675 (1157)
T PRK11447 599 QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTR-EPGNADARLGLIEVDIAQGDLAAARAQLAKLPAT--ANDSLNTQR 675 (1157)
T ss_pred CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCChHHHH
Confidence 3344556778999999999999999999999984 3447889999999999999999999999988764 44 445566
Q ss_pred HHHHHHHhcCChHHHHHHHHHhHHHHhhhhhcCCCC---cHHHHHHHHHHHHhcCChhhHHHHHHHHHH-cCCCCc----
Q 044770 344 HLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTP---WLETTLSIIEIFAEKGDVGNAENLFEELKK-ANYTKY---- 415 (464)
Q Consensus 344 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~p---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~~~~p~---- 415 (464)
.+..++...|++++|.++++.++.. .....| +...+..+...+...|++++|...|+.... .|+.|.
T Consensus 676 ~la~~~~~~g~~~eA~~~~~~al~~-----~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~~~~~~~~~p~~ 750 (1157)
T PRK11447 676 RVALAWAALGDTAAAQRTFNRLIPQ-----AKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMVASGITPTRPQD 750 (1157)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHhhh-----CccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCCCCCC
Confidence 7778888999999999999998531 111222 334566678889999999999999998863 344433
Q ss_pred HHHHHHHH
Q 044770 416 TFVYNTLI 423 (464)
Q Consensus 416 ~~~~~~li 423 (464)
..+++.+.
T Consensus 751 ~~~~~~l~ 758 (1157)
T PRK11447 751 NDTFTRLT 758 (1157)
T ss_pred chHHHHHh
Confidence 23455444
No 18
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.87 E-value=1.7e-17 Score=163.73 Aligned_cols=420 Identities=11% Similarity=-0.021 Sum_probs=312.9
Q ss_pred hhcCccChhchHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCCchhHHHHHHHHHhhcChHHHHHHhhhcCCC-CCchhH
Q 044770 19 REGFPVHRGEIFHSINRLRKLQLNKRALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQGEKLFCCIPKD-YQNELL 97 (464)
Q Consensus 19 ~~g~~~~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~ 97 (464)
....+.++..+.-.+......|+.++|++++....... +.+...+..+...+...|++++|.++|++.... +.+...
T Consensus 8 ~~~~~~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~--~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a 85 (765)
T PRK10049 8 ALKSALSNNQIADWLQIALWAGQDAEVITVYNRYRVHM--QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDY 85 (765)
T ss_pred hhccCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Confidence 34567788889999999999999999999999987522 344556899999999999999999999997776 345777
Q ss_pred HHHHHHHHHhhCcHHHHHHHHHHHHHcCCCCchhhHHHHHHHhcCCCCcccHHHHHHHHHhCCCCCChhhHHHHHHHHHc
Q 044770 98 YNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEAN 177 (464)
Q Consensus 98 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 177 (464)
+..++..+...|++++|+..+++..+.. +.+.. +..+..++...|+.++|...++++.+.. +.+...+..+..++..
T Consensus 86 ~~~la~~l~~~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~-P~~~~~~~~la~~l~~ 162 (765)
T PRK10049 86 QRGLILTLADAGQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRA-PQTQQYPTEYVQALRN 162 (765)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence 8889999999999999999999999863 44555 8888889999999999999999999864 4456666778888889
Q ss_pred cCChhHHHHHHHHHHhCCCCCcH------hHHHHHHHHHH-----hcChh---hHHHHHHHHHHhc-cCCCChh-hHH--
Q 044770 178 DHNIEGLMKVYSDMKRSEVEPNE------VSYCILATAHA-----VARLY---TVAETYVEALEKS-MTGNNWS-TLD-- 239 (464)
Q Consensus 178 ~~~~~~a~~~~~~m~~~~~~p~~------~~~~~li~~~~-----~~~~~---~~a~~~~~~~~~~-~~~~~~~-~~~-- 239 (464)
.+..+.|+..++.... .|+. .....++.... ..+++ ++|+..++.+.+. ...|+.. .+.
T Consensus 163 ~~~~e~Al~~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a 239 (765)
T PRK10049 163 NRLSAPALGAIDDANL---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRA 239 (765)
T ss_pred CCChHHHHHHHHhCCC---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHH
Confidence 9999999999987664 3331 01112222221 22234 6788888888754 2222221 111
Q ss_pred --HHHHHHHhhcChhhHHHHHHHhccCCCC-chhhHHHHHHHhhccCChHHHHHHHHHHHhccccC---ChhhHHHHHHH
Q 044770 240 --VLIILYGYLAKGKDLERIWATVQELPNV-RSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLK---ATEQYNSVISV 313 (464)
Q Consensus 240 --~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~~~~~li~~ 313 (464)
..+.++...|+.++|+..|+.+....+. .......+...|...|++++|...|+.+.+..... ....+..+..+
T Consensus 240 ~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a 319 (765)
T PRK10049 240 RIDRLGALLARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYS 319 (765)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHH
Confidence 1133456779999999999998885432 22223336778999999999999999987643211 12456667778
Q ss_pred HHhcCChhHHHHHHHHHHhCCC-----------CccH---HHHHHHHHHHHhcCChHHHHHHHHHhHHHHhhhhhcCCCC
Q 044770 314 YCKNGFIDKASGLLKEMSMNGC-----------KPNA---ITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTP 379 (464)
Q Consensus 314 ~~~~~~~~~a~~~~~~m~~~g~-----------~p~~---~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~p 379 (464)
+...|++++|..+++.+.+... .|+. ..+..+...+...|++++|+..+++++. ..+.
T Consensus 320 ~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~--------~~P~ 391 (765)
T PRK10049 320 LLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAY--------NAPG 391 (765)
T ss_pred HHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--------hCCC
Confidence 8999999999999999987521 1332 2445667778899999999999999842 1233
Q ss_pred cHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCcH-HHHHHHHHHHHHcCCC--hhHHHHHHHhCCCCCCHHHHHHHH
Q 044770 380 WLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYT-FVYNTLIKAYVKAKIN--DPNLLRRMILGGARPDAETYSLLK 456 (464)
Q Consensus 380 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~-~~~~~li~~~~~~g~~--a~~~~~~m~~~~~~p~~~t~~~L~ 456 (464)
+...+..+...+...|++++|++.+++..+.. |+. ..+-.....+.+.|+. |..+++++++. .|+......|-
T Consensus 392 n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~--Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~--~Pd~~~~~~~~ 467 (765)
T PRK10049 392 NQGLRIDYASVLQARGWPRAAENELKKAEVLE--PRNINLEVEQAWTALDLQEWRQMDVLTDDVVAR--EPQDPGVQRLA 467 (765)
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC--CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CCCCHHHHHHH
Confidence 56678899999999999999999999999854 654 4666666777778874 89999999984 57777665554
Q ss_pred HH
Q 044770 457 LA 458 (464)
Q Consensus 457 ~~ 458 (464)
+.
T Consensus 468 ~~ 469 (765)
T PRK10049 468 RA 469 (765)
T ss_pred HH
Confidence 44
No 19
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.87 E-value=1.9e-17 Score=140.51 Aligned_cols=346 Identities=11% Similarity=0.076 Sum_probs=257.0
Q ss_pred chhHHHHHHHHHHhhCcHHHHHHHHHHHHHcCCCCchhhHHHHHHHhcCCCCcccHHHHHHHHHhCCCCCChhhHHHHHH
Q 044770 94 NELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMK 173 (464)
Q Consensus 94 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 173 (464)
+..+|..+|.+.|+-...+.|.+++.+......+.+..+||.+|.+-.-. .-.+++.+|....+.||..|+|++++
T Consensus 206 T~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~----~~K~Lv~EMisqkm~Pnl~TfNalL~ 281 (625)
T KOG4422|consen 206 TDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYS----VGKKLVAEMISQKMTPNLFTFNALLS 281 (625)
T ss_pred CchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhh----ccHHHHHHHHHhhcCCchHhHHHHHH
Confidence 67899999999999999999999999999887899999999999874432 23789999999999999999999999
Q ss_pred HHHccCChhH----HHHHHHHHHhCCCCCcHhHHHHHHHHHHhcChhhH-HHHHHHHHHhc----cCCC----ChhhHHH
Q 044770 174 IEANDHNIEG----LMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTV-AETYVEALEKS----MTGN----NWSTLDV 240 (464)
Q Consensus 174 ~~~~~~~~~~----a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~-a~~~~~~~~~~----~~~~----~~~~~~~ 240 (464)
+..+.|+++. |.+++.+|++-|+.|...+|..+|..+++.++..+ +..++.++... .++| |...|..
T Consensus 282 c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~ 361 (625)
T KOG4422|consen 282 CAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQS 361 (625)
T ss_pred HHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHHH
Confidence 9999998876 56788899999999999999999999999888854 45555555432 2332 4556777
Q ss_pred HHHHHHhhcChhhHHHHHHHhccCCC-----Cc---hhhHHHHHHHhhccCChHHHHHHHHHHHhccccCChhhHHHHHH
Q 044770 241 LIILYGYLAKGKDLERIWATVQELPN-----VR---SKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVIS 312 (464)
Q Consensus 241 l~~~~~~~~~~~~a~~~~~~~~~~~~-----~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 312 (464)
.+..|....+.+.|.++...+..+.. ++ ..-|..+....|.....+.-...|+.|.-.-..|+..+...++.
T Consensus 362 AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lr 441 (625)
T KOG4422|consen 362 AMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLR 441 (625)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHHH
Confidence 88899999999999999888876322 11 12355677888888899999999999998888899999999999
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCCccHHHHHHHHHHHHhcC-Ch--------HH-----HHHHHHHhHHHHhhhhhcCCC
Q 044770 313 VYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSN-LV--------EE-----GFKALELGMKLITTKKVRSST 378 (464)
Q Consensus 313 ~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~-~~--------~~-----a~~~~~~~~~~~~~~~~~~~~ 378 (464)
+....|+++-.-+++.+++..|..-+...-.-++..+++.. .. .. |..+++....... ......
T Consensus 442 A~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~--R~r~~~ 519 (625)
T KOG4422|consen 442 ALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYESQPI--RQRAQD 519 (625)
T ss_pred HHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHH--HHHhcc
Confidence 99999999999999999998876555555545555555443 11 11 1111111100011 112333
Q ss_pred CcHHHHHHHHHHHHhcCChhhHHHHHHHHHHc-CCCCcHHHHHHHH---HHHHHcCCC--hhHHHHHHHhCCC
Q 044770 379 PWLETTLSIIEIFAEKGDVGNAENLFEELKKA-NYTKYTFVYNTLI---KAYVKAKIN--DPNLLRRMILGGA 445 (464)
Q Consensus 379 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~p~~~~~~~li---~~~~~~g~~--a~~~~~~m~~~~~ 445 (464)
......+...-.+.+.|+.++|.++|..+.+. +-.|-....|+|+ .+-.+.+.. |..+++-|...+.
T Consensus 520 ~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~~~n~ 592 (625)
T KOG4422|consen 520 WPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLASAFNL 592 (625)
T ss_pred CChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCc
Confidence 34445667888889999999999999998543 3334455666444 444444443 7888888866553
No 20
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.85 E-value=5.5e-17 Score=157.30 Aligned_cols=385 Identities=9% Similarity=-0.101 Sum_probs=274.0
Q ss_pred cchhhHHHHhhcCccChhchHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCCchhHHHHHHHHHhhcChHHHHHHhhhcC
Q 044770 10 VGSAFQSWMREGFPVHRGEIFHSINRLRKLQLNKRALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQGEKLFCCIP 89 (464)
Q Consensus 10 ~~~~l~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 89 (464)
+...++... ...|++..+..+..++...|++++|++.++..++.. +.+...+..+..++...|++++|...|..+.
T Consensus 146 Ai~~y~~al--~~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~--p~~~~a~~~~a~a~~~lg~~~eA~~~~~~~~ 221 (615)
T TIGR00990 146 AIKLYSKAI--ECKPDPVYYSNRAACHNALGDWEKVVEDTTAALELD--PDYSKALNRRANAYDGLGKYADALLDLTASC 221 (615)
T ss_pred HHHHHHHHH--hcCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 334444433 345677788888899999999999999999998832 3355688889999999999999998876554
Q ss_pred CCCC-chhHHHHHHHHHHhhCcHHHHHHHHHHHHHc---------------------------CCCCc-hhhHHHHHHH-
Q 044770 90 KDYQ-NELLYNNLVIACLDKGVIKLSLEYMKKMRVL---------------------------GHSIS-YLVFNRLIIL- 139 (464)
Q Consensus 90 ~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~---------------------------~~~~~-~~~~~~l~~~- 139 (464)
...+ +......++..+........+...++.-... ...+. ...+..+...
T Consensus 222 ~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 301 (615)
T TIGR00990 222 IIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELDEETGNGQLQLGLKS 301 (615)
T ss_pred HhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccccccccccchHHHHHHH
Confidence 3211 1111111111111111111111111100000 00000 0001111100
Q ss_pred --hcCCCCcccHHHHHHHHHhCC-C-CCChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCc-HhHHHHHHHHHHhcC
Q 044770 140 --NSSPGRRKTIPNILRQMKADK-V-APHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPN-EVSYCILATAHAVAR 214 (464)
Q Consensus 140 --~~~~~~~~~a~~~~~~~~~~~-~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~li~~~~~~~ 214 (464)
....+++++|.+.|+...+.+ . +.....|+.+...+...|++++|+..|++..+. .|+ ...|..+...+...|
T Consensus 302 ~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l--~P~~~~~~~~la~~~~~~g 379 (615)
T TIGR00990 302 PESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIEL--DPRVTQSYIKRASMNLELG 379 (615)
T ss_pred HHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHCC
Confidence 122357889999999998764 2 334567888888899999999999999999876 444 567888888899999
Q ss_pred hhhHHHHHHHHHHhccCCCChhhHHHHHHHHHhhcChhhHHHHHHHhccCCCCchhhHHHHHHHhhccCChHHHHHHHHH
Q 044770 215 LYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLE 294 (464)
Q Consensus 215 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 294 (464)
++++|...|++..+. .+.+..++..+...+...|++++|...++......+.+...+..+...+.+.|++++|...|+.
T Consensus 380 ~~~eA~~~~~~al~~-~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~ 458 (615)
T TIGR00990 380 DPDKAEEDFDKALKL-NSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRR 458 (615)
T ss_pred CHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 999999999999876 3456788899999999999999999999999987777778888999999999999999999999
Q ss_pred HHhccccCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCccHH------HHHHHHHHHHhcCChHHHHHHHHHhHHH
Q 044770 295 MQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAI------TYRHLALGCFKSNLVEEGFKALELGMKL 368 (464)
Q Consensus 295 ~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~------~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 368 (464)
..+. .+.+...|+.+...+...|++++|+..|++..+.....+.. .++..+..+...|++++|.++++++++
T Consensus 459 al~~-~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~- 536 (615)
T TIGR00990 459 CKKN-FPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALI- 536 (615)
T ss_pred HHHh-CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh-
Confidence 9873 34467889999999999999999999999988743211111 122222233446999999999999842
Q ss_pred HhhhhhcCCCC-cHHHHHHHHHHHHhcCChhhHHHHHHHHHHcC
Q 044770 369 ITTKKVRSSTP-WLETTLSIIEIFAEKGDVGNAENLFEELKKAN 411 (464)
Q Consensus 369 ~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 411 (464)
..| +...+..+...+...|++++|...|++..+..
T Consensus 537 --------l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~ 572 (615)
T TIGR00990 537 --------IDPECDIAVATMAQLLLQQGDVDEALKLFERAAELA 572 (615)
T ss_pred --------cCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHh
Confidence 234 34568889999999999999999999987653
No 21
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.84 E-value=3.9e-17 Score=161.24 Aligned_cols=384 Identities=8% Similarity=-0.046 Sum_probs=283.7
Q ss_pred ccChhchHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCCchhHHHHHHHHHhhcChHHHHHHhhhcCCCCC-chhHHHHH
Q 044770 23 PVHRGEIFHSINRLRKLQLNKRALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQGEKLFCCIPKDYQ-NELLYNNL 101 (464)
Q Consensus 23 ~~~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~l 101 (464)
+.+...+..+...+...|++++|.++++...+.. +.+...+..+...+...|++++|...++++....| +.. +..+
T Consensus 46 ~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~P~~~~-~~~l 122 (765)
T PRK10049 46 QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE--PQNDDYQRGLILTLADAGQYDEALVKAKQLVSGAPDKAN-LLAL 122 (765)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-HHHH
Confidence 4445568888899999999999999999998843 34456677888899999999999999999987745 556 8889
Q ss_pred HHHHHhhCcHHHHHHHHHHHHHcCCCCchhhHHHHHHHhcCCCCcccHHHHHHHHHhCCCCCCh------hhHHHHHHHH
Q 044770 102 VIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHV------STFHILMKIE 175 (464)
Q Consensus 102 i~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~~l~~~~ 175 (464)
..++...|++++|+..++++.+.. +.+...+..+..++...+..+.|.+.++.... .|+. .....++...
T Consensus 123 a~~l~~~g~~~~Al~~l~~al~~~-P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~---~p~~~~~l~~~~~~~~~r~~ 198 (765)
T PRK10049 123 AYVYKRAGRHWDELRAMTQALPRA-PQTQQYPTEYVQALRNNRLSAPALGAIDDANL---TPAEKRDLEADAAAELVRLS 198 (765)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCChHHHHHHHHhCCC---CHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999864 33556666778888888999999998887664 3331 1122223322
Q ss_pred H-----ccCCh---hHHHHHHHHHHhC-CCCCcHh-HHH----HHHHHHHhcChhhHHHHHHHHHHhccCC-CChhhHHH
Q 044770 176 A-----NDHNI---EGLMKVYSDMKRS-EVEPNEV-SYC----ILATAHAVARLYTVAETYVEALEKSMTG-NNWSTLDV 240 (464)
Q Consensus 176 ~-----~~~~~---~~a~~~~~~m~~~-~~~p~~~-~~~----~li~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~ 240 (464)
. ..+++ ++|+..++.+.+. ...|+.. .+. ..+..+...|++++|+..|+.+.+.+.+ |+ .....
T Consensus 199 ~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~-~a~~~ 277 (765)
T PRK10049 199 FMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPP-WAQRW 277 (765)
T ss_pred cccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCH-HHHHH
Confidence 2 12234 7788899988854 2233321 111 1134456779999999999999887532 32 22233
Q ss_pred HHHHHHhhcChhhHHHHHHHhccCCCCc----hhhHHHHHHHhhccCChHHHHHHHHHHHhccc-----------cCC--
Q 044770 241 LIILYGYLAKGKDLERIWATVQELPNVR----SKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQ-----------LKA-- 303 (464)
Q Consensus 241 l~~~~~~~~~~~~a~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-----------~~~-- 303 (464)
+..++...|++++|+..++.+....+.+ ......+..++...|++++|..+++.+..... .|+
T Consensus 278 la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~ 357 (765)
T PRK10049 278 VASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDD 357 (765)
T ss_pred HHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCch
Confidence 5778999999999999999987644333 23456677788999999999999999987421 122
Q ss_pred -hhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCccHHHHHHHHHHHHhcCChHHHHHHHHHhHHHHhhhhhcCCCCc-H
Q 044770 304 -TEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPW-L 381 (464)
Q Consensus 304 -~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~p~-~ 381 (464)
...+..+...+...|+.++|+.+++++.... +-+...+..+...+...|++++|++.++.++ ...|+ .
T Consensus 358 ~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~-P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al---------~l~Pd~~ 427 (765)
T PRK10049 358 WLQGQSLLSQVAKYSNDLPQAEMRARELAYNA-PGNQGLRIDYASVLQARGWPRAAENELKKAE---------VLEPRNI 427 (765)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH---------hhCCCCh
Confidence 1245567778899999999999999998852 3356777888888999999999999999994 34454 5
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCcHHHHHHHHHHH
Q 044770 382 ETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAY 426 (464)
Q Consensus 382 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~ 426 (464)
..+..++..+...|++++|..+++++.+.. |+...--.+=+.+
T Consensus 428 ~l~~~~a~~al~~~~~~~A~~~~~~ll~~~--Pd~~~~~~~~~~~ 470 (765)
T PRK10049 428 NLEVEQAWTALDLQEWRQMDVLTDDVVARE--PQDPGVQRLARAR 470 (765)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHH
Confidence 566677778899999999999999999853 6655444333333
No 22
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.82 E-value=3.6e-15 Score=144.77 Aligned_cols=411 Identities=10% Similarity=-0.001 Sum_probs=257.9
Q ss_pred CccChhchHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCCc--hhHHHHHHHHHhhcChHHHHHHhhhcCCC-CCchhHH
Q 044770 22 FPVHRGEIFHSINRLRKLQLNKRALEVMEWVIRERPYRPKE--LDYSYLLEFTIKNHGISQGEKLFCCIPKD-YQNELLY 98 (464)
Q Consensus 22 ~~~~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~ 98 (464)
.|..+.+....+-...+.|+++.|++.|+++.+. .|+. ..+ .++..+...|+.++|+..+++.... .......
T Consensus 30 ~p~~~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~---~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~l 105 (822)
T PRK14574 30 NPAMADTQYDSLIIRARAGDTAPVLDYLQEESKA---GPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSSMNISSRGL 105 (822)
T ss_pred CccchhHHHHHHHHHHhCCCHHHHHHHHHHHHhh---CccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHH
Confidence 3334455555666677999999999999999884 3443 233 8888888999999999999998842 1223333
Q ss_pred HHHHHHHHhhCcHHHHHHHHHHHHHcCCCCchhhHHHHHHHhcCCCCcccHHHHHHHHHhCCCCCChhhHHHHHHHHHcc
Q 044770 99 NNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEAND 178 (464)
Q Consensus 99 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 178 (464)
..+...+...|++++|+++|+++.+.. +-+...+..++..+...++.++|++.++.+... .|+...+-.++..+...
T Consensus 106 lalA~ly~~~gdyd~Aiely~kaL~~d-P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~ 182 (822)
T PRK14574 106 ASAARAYRNEKRWDQALALWQSSLKKD-PTNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRAT 182 (822)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhc
Confidence 444668888899999999999999874 335677778888899999999999999999875 56666665554555456
Q ss_pred CChhHHHHHHHHHHhCCCCCcHhHHHHHHHHHHhcChhhHHHHHHH----------------------------------
Q 044770 179 HNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVE---------------------------------- 224 (464)
Q Consensus 179 ~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~---------------------------------- 224 (464)
++..+|++.++++.+.. +-+...+..+..+..+.|-...|.++.+
T Consensus 183 ~~~~~AL~~~ekll~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~ 261 (822)
T PRK14574 183 DRNYDALQASSEAVRLA-PTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSET 261 (822)
T ss_pred chHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccch
Confidence 66766999999998873 2244455555555555544444443332
Q ss_pred --------------HHHhc-cCCCCh-hh----HHHHHHHHHhhcChhhHHHHHHHhccCC-CCchhhHHHHHHHhhccC
Q 044770 225 --------------ALEKS-MTGNNW-ST----LDVLIILYGYLAKGKDLERIWATVQELP-NVRSKSYVLAIEAFGRIA 283 (464)
Q Consensus 225 --------------~~~~~-~~~~~~-~~----~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g 283 (464)
.+... +..|.. .. ..-.+-++...++..++++.++.+.... +....+-..+.++|...+
T Consensus 262 ~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~ 341 (822)
T PRK14574 262 ERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRR 341 (822)
T ss_pred hhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcC
Confidence 22221 111211 11 1122345556666777777777776533 445556666777777777
Q ss_pred ChHHHHHHHHHHHhccc-----cCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCC-----------Cc--cHH-HHHH
Q 044770 284 QVSRAEELWLEMQSVKQ-----LKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGC-----------KP--NAI-TYRH 344 (464)
Q Consensus 284 ~~~~a~~~~~~~~~~~~-----~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~-----------~p--~~~-~~~~ 344 (464)
++++|..+++.+..... +++......|.-+|...+++++|..+++++.+.-. .| |-. .+..
T Consensus 342 ~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l 421 (822)
T PRK14574 342 LPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTL 421 (822)
T ss_pred CcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHH
Confidence 77777777777654321 12333345667777777777777777777765211 12 211 2233
Q ss_pred HHHHHHhcCChHHHHHHHHHhHHHHhhhhhcCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCc-HHHHHHHH
Q 044770 345 LALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKY-TFVYNTLI 423 (464)
Q Consensus 345 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~li 423 (464)
++..+...|++.+|++.++.++ ..-+-|......+.+.+...|++.+|++.++..... .|+ ..+.....
T Consensus 422 ~a~~~~~~gdl~~Ae~~le~l~--------~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l--~P~~~~~~~~~~ 491 (822)
T PRK14574 422 LVQSLVALNDLPTAQKKLEDLS--------STAPANQNLRIALASIYLARDLPRKAEQELKAVESL--APRSLILERAQA 491 (822)
T ss_pred HHHHHHHcCCHHHHHHHHHHHH--------HhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhh--CCccHHHHHHHH
Confidence 4455666777777777777763 112225555667777777777777777777655554 243 33555556
Q ss_pred HHHHHcCCC--hhHHHHHHHhCCCCCCHHHH
Q 044770 424 KAYVKAKIN--DPNLLRRMILGGARPDAETY 452 (464)
Q Consensus 424 ~~~~~~g~~--a~~~~~~m~~~~~~p~~~t~ 452 (464)
.++...|+. |..+.+...+. .|+....
T Consensus 492 ~~al~l~e~~~A~~~~~~l~~~--~Pe~~~~ 520 (822)
T PRK14574 492 ETAMALQEWHQMELLTDDVISR--SPEDIPS 520 (822)
T ss_pred HHHHhhhhHHHHHHHHHHHHhh--CCCchhH
Confidence 666666653 55666555543 3444433
No 23
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.76 E-value=1.7e-13 Score=136.01 Aligned_cols=409 Identities=10% Similarity=-0.008 Sum_probs=236.1
Q ss_pred cchhhHHHHhhcCccChhchHHH-HHHHHhhcchHHHHHHHHHHHHcCCCCCCchhHHHHHHHHHh-hcChHHHHHHhhh
Q 044770 10 VGSAFQSWMREGFPVHRGEIFHS-INRLRKLQLNKRALEVMEWVIRERPYRPKELDYSYLLEFTIK-NHGISQGEKLFCC 87 (464)
Q Consensus 10 ~~~~l~~~~~~g~~~~~~~~~~~-l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~a~~~~~~ 87 (464)
+...++ .......|++.++... .+.+.+.++|++|++.+..+.+.. +.+......|...|.. .++ +.+..+++.
T Consensus 166 Al~AL~-lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~k~~--pl~~~~~~~L~~ay~q~l~~-~~a~al~~~ 241 (987)
T PRK09782 166 ARAQLN-DATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYNEARQQN--TLSAAERRQWFDVLLAGQLD-DRLLALQSQ 241 (987)
T ss_pred HHHHHH-HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHhhCH-HHHHHHhch
Confidence 334444 2222333344444444 888889999999999999998843 2334445566667766 366 777777654
Q ss_pred cCCCCCchhHHHHHHHHHHhhCcHHHHHHHHHHHHHcCCC-CchhhHHHH------------------------------
Q 044770 88 IPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHS-ISYLVFNRL------------------------------ 136 (464)
Q Consensus 88 ~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~-~~~~~~~~l------------------------------ 136 (464)
.. ..+...+..+...+.+.|+.++|.+++.++...-.. |...++.-+
T Consensus 242 ~l--k~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (987)
T PRK09782 242 GI--FTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGAT 319 (987)
T ss_pred hc--ccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHH
Confidence 22 246778888888888888888888888877543211 211111111
Q ss_pred HHHhcCCCCcccHHHH-----------------------------HHHHHhCCCCCChhhHHHHHHHHHccCChhHHHHH
Q 044770 137 IILNSSPGRRKTIPNI-----------------------------LRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKV 187 (464)
Q Consensus 137 ~~~~~~~~~~~~a~~~-----------------------------~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 187 (464)
+..+.+.++++.+.++ +..|.+.. +-+......+.-...+.|+.++|.++
T Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~y~~~-~~~~~~l~q~~~~~~~~~~~~~a~~~ 398 (987)
T PRK09782 320 LPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVATRNKAEALRLARLLYQQE-PANLTRLDQLTWQLMQNGQSREAADL 398 (987)
T ss_pred HHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccccCchhHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcccHHHHHHH
Confidence 1122222222222211 11111110 00111111111122233334444444
Q ss_pred HHHHHhC---------------------------------------------------------------CC-CC--cHh
Q 044770 188 YSDMKRS---------------------------------------------------------------EV-EP--NEV 201 (464)
Q Consensus 188 ~~~m~~~---------------------------------------------------------------~~-~p--~~~ 201 (464)
|+..... +. ++ +..
T Consensus 399 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~ 478 (987)
T PRK09782 399 LLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAA 478 (987)
T ss_pred HHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHH
Confidence 3333220 01 12 334
Q ss_pred HHHHHHHHHHhcChhhHHHHHHHHHHhccCCCChhhHHHHHHHHHhhcChhhHHHHHHHhccCCCCchhhHHHHHHHhhc
Q 044770 202 SYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGR 281 (464)
Q Consensus 202 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 281 (464)
.|..+..++.. ++.++|...+.+..... |+......+...+...|+.++|...++.+...++.+ ..+..+...+.+
T Consensus 479 a~~~LG~~l~~-~~~~eAi~a~~~Al~~~--Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~~p~~-~a~~~la~all~ 554 (987)
T PRK09782 479 AWNRLAKCYRD-TLPGVALYAWLQAEQRQ--PDAWQHRAVAYQAYQVEDYATALAAWQKISLHDMSN-EDLLAAANTAQA 554 (987)
T ss_pred HHHHHHHHHHh-CCcHHHHHHHHHHHHhC--CchHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCc-HHHHHHHHHHHH
Confidence 44555544444 56666777666655432 443333334444457778888888877765543333 234556667777
Q ss_pred cCChHHHHHHHHHHHhccccCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCccHHHHHHHHHHHHhcCChHHHHHH
Q 044770 282 IAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKA 361 (464)
Q Consensus 282 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~ 361 (464)
.|++++|...++...+.. +.+...+..+...+...|++++|...+++..+ ..|+...+..+...+.+.|++++|...
T Consensus 555 ~Gd~~eA~~~l~qAL~l~-P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~--l~P~~~a~~~LA~~l~~lG~~deA~~~ 631 (987)
T PRK09782 555 AGNGAARDRWLQQAEQRG-LGDNALYWWLHAQRYIPGQPELALNDLTRSLN--IAPSANAYVARATIYRQRHNVPAAVSD 631 (987)
T ss_pred CCCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHH--hCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 888888888888777643 22222233333334445888888888888877 456677777777778888888888888
Q ss_pred HHHhHHHHhhhhhcCCCC-cHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCC-cHHHHHHHHHHHHHcCCC--hhHHH
Q 044770 362 LELGMKLITTKKVRSSTP-WLETTLSIIEIFAEKGDVGNAENLFEELKKANYTK-YTFVYNTLIKAYVKAKIN--DPNLL 437 (464)
Q Consensus 362 ~~~~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~--a~~~~ 437 (464)
++.++ ...| +...++.+...+...|++++|...+++..+.. | +...+..+-.++...|+. |...+
T Consensus 632 l~~AL---------~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~--P~~~~a~~nLA~al~~lGd~~eA~~~l 700 (987)
T PRK09782 632 LRAAL---------ELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGL--PDDPALIRQLAYVNQRLDDMAATQHYA 700 (987)
T ss_pred HHHHH---------HhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 88874 2334 45566777778888888888888888877753 4 344777888888888873 77777
Q ss_pred HHHHhC
Q 044770 438 RRMILG 443 (464)
Q Consensus 438 ~~m~~~ 443 (464)
++..+.
T Consensus 701 ~~Al~l 706 (987)
T PRK09782 701 RLVIDD 706 (987)
T ss_pred HHHHhc
Confidence 777764
No 24
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.76 E-value=2.6e-15 Score=128.79 Aligned_cols=421 Identities=11% Similarity=0.052 Sum_probs=270.2
Q ss_pred cChhchHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCCch-hHHHHHHHHHhhcChHHHHHHhhhcCCCCCc------hh
Q 044770 24 VHRGEIFHSINRLRKLQLNKRALEVMEWVIRERPYRPKEL-DYSYLLEFTIKNHGISQGEKLFCCIPKDYQN------EL 96 (464)
Q Consensus 24 ~~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~------~~ 96 (464)
.+-..+..+.+.|..+.-..+|+..|+-+.+. ..-|+.- .-..+.+.+.+.+.+..|++.++......|+ ..
T Consensus 199 ltfsvl~nlaqqy~~ndm~~ealntyeiivkn-kmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rik 277 (840)
T KOG2003|consen 199 LTFSVLFNLAQQYEANDMTAEALNTYEIIVKN-KMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIK 277 (840)
T ss_pred chHHHHHHHHHHhhhhHHHHHHhhhhhhhhcc-cccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHH
Confidence 34445566667777777788899999888873 3334433 3345667788888899999988876665443 23
Q ss_pred HHHHHHHHHHhhCcHHHHHHHHHHHHHcCCCCchhhHHHHHHHhcCCCCcccHHHHHHHHHhCCCCC------------C
Q 044770 97 LYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAP------------H 164 (464)
Q Consensus 97 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~------------~ 164 (464)
..+.+.-.+.+.|+++.|+.-|+...+. .|+..+--.|+-++..-|+.++..+.|..|+.....| +
T Consensus 278 il~nigvtfiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~ 355 (840)
T KOG2003|consen 278 ILNNIGVTFIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPD 355 (840)
T ss_pred HHhhcCeeEEecccchhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcc
Confidence 4555666688899999999999988875 4776665556666777788888899999887643222 2
Q ss_pred hhhHHHHH-----HHHHccCC--hhHHHHHHHHHHhCCCCCcHhH---H----------HH--------HHHHHHhcChh
Q 044770 165 VSTFHILM-----KIEANDHN--IEGLMKVYSDMKRSEVEPNEVS---Y----------CI--------LATAHAVARLY 216 (464)
Q Consensus 165 ~~~~~~l~-----~~~~~~~~--~~~a~~~~~~m~~~~~~p~~~~---~----------~~--------li~~~~~~~~~ 216 (464)
....+.-+ .-.-+..+ .+++.-.--++..--+.|+-.. | .. -...+.+.|++
T Consensus 356 ~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~ 435 (840)
T KOG2003|consen 356 DNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDI 435 (840)
T ss_pred hHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCH
Confidence 22222222 11111111 1111111111111112222110 0 00 11235678888
Q ss_pred hHHHHHHHHHHhccCCCChhhHHHHHHH------------------------------------HHhhcChhhHHHHHHH
Q 044770 217 TVAETYVEALEKSMTGNNWSTLDVLIIL------------------------------------YGYLAKGKDLERIWAT 260 (464)
Q Consensus 217 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~------------------------------------~~~~~~~~~a~~~~~~ 260 (464)
+.|+++++...+..-+.-...-+.|-.. ....|+++.|.+.+++
T Consensus 436 ~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~yke 515 (840)
T KOG2003|consen 436 EGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKE 515 (840)
T ss_pred HHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHH
Confidence 8888888777554332222211111111 1223556666666666
Q ss_pred hccCCCCchhhHHHHHHHhhccCChHHHHHHHHHHHhccccCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCccHH
Q 044770 261 VQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAI 340 (464)
Q Consensus 261 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ 340 (464)
.......-+...-.+.-.+-..|++++|+..|-++.. -..-+......+...|-...+...|++++.+.... ++-|+.
T Consensus 516 al~ndasc~ealfniglt~e~~~~ldeald~f~klh~-il~nn~evl~qianiye~led~aqaie~~~q~~sl-ip~dp~ 593 (840)
T KOG2003|consen 516 ALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHA-ILLNNAEVLVQIANIYELLEDPAQAIELLMQANSL-IPNDPA 593 (840)
T ss_pred HHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHH-HHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCHH
Confidence 6554444444444445556677888888888876654 22235566666777777778888888888776553 444677
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHhHHHHhhhhhcCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCcHHHHH
Q 044770 341 TYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYN 420 (464)
Q Consensus 341 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~ 420 (464)
.+..|...|-+.|+-..|.+.+-.- -.-++.+..+...|...|....-++.|...|++..- +.|+..-|.
T Consensus 594 ilskl~dlydqegdksqafq~~yds--------yryfp~nie~iewl~ayyidtqf~ekai~y~ekaal--iqp~~~kwq 663 (840)
T KOG2003|consen 594 ILSKLADLYDQEGDKSQAFQCHYDS--------YRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--IQPNQSKWQ 663 (840)
T ss_pred HHHHHHHHhhcccchhhhhhhhhhc--------ccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--cCccHHHHH
Confidence 8888888899999999988877654 234555888888899989988889999999988765 469999999
Q ss_pred HHHHHHHHc-CCC--hhHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 044770 421 TLIKAYVKA-KIN--DPNLLRRMILGGARPDAETYSLLKLAEQ 460 (464)
Q Consensus 421 ~li~~~~~~-g~~--a~~~~~~m~~~~~~p~~~t~~~L~~~~~ 460 (464)
.+|..|.+. |++ |+++++...+. ++-|...+..|++.+.
T Consensus 664 lmiasc~rrsgnyqka~d~yk~~hrk-fpedldclkflvri~~ 705 (840)
T KOG2003|consen 664 LMIASCFRRSGNYQKAFDLYKDIHRK-FPEDLDCLKFLVRIAG 705 (840)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHHh-CccchHHHHHHHHHhc
Confidence 999888765 664 89999988764 6667777788877653
No 25
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.76 E-value=1e-13 Score=134.87 Aligned_cols=371 Identities=12% Similarity=-0.005 Sum_probs=253.3
Q ss_pred HHHHHHHHhhcchHHHHHHHHHHHHcCCCCCCchhHHHHHHHHHhhcChHHHHHHhhhcCCCCC-chhHHHHHHHHHHhh
Q 044770 30 FHSINRLRKLQLNKRALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQGEKLFCCIPKDYQ-NELLYNNLVIACLDK 108 (464)
Q Consensus 30 ~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~li~~~~~~ 108 (464)
..++..+...|+.++|+..++.... +..........+...+...|++++|.++|+++.+..| +...+..++..+...
T Consensus 72 ~dll~l~~~~G~~~~A~~~~eka~~--p~n~~~~~llalA~ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~ 149 (822)
T PRK14574 72 DDWLQIAGWAGRDQEVIDVYERYQS--SMNISSRGLASAARAYRNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADA 149 (822)
T ss_pred HHHHHHHHHcCCcHHHHHHHHHhcc--CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhc
Confidence 3666667777777777777777652 1111222222234466666777777777777776633 455666667777777
Q ss_pred CcHHHHHHHHHHHHHcCCCCchhhHHHHHHHhcCCCCcccHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhH-----
Q 044770 109 GVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEG----- 183 (464)
Q Consensus 109 ~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~----- 183 (464)
++.++|++.++++... .|+...+..++..+...++..+|++.++++.+.. +.+...+..+..++.+.|-...
T Consensus 150 ~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~ 226 (822)
T PRK14574 150 GRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQASSEAVRLA-PTSEEVLKNHLEILQRNRIVEPALRLA 226 (822)
T ss_pred CCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHH
Confidence 7777777777777664 3455555444444434455545777777777653 3344444444444444443333
Q ss_pred -------------------------------------------HHHHHHHHHhC-CCCCcH-hHH----HHHHHHHHhcC
Q 044770 184 -------------------------------------------LMKVYSDMKRS-EVEPNE-VSY----CILATAHAVAR 214 (464)
Q Consensus 184 -------------------------------------------a~~~~~~m~~~-~~~p~~-~~~----~~li~~~~~~~ 214 (464)
|+.-++.+... +-.|.. ..| .-.+-++...+
T Consensus 227 ~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~ 306 (822)
T PRK14574 227 KENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRH 306 (822)
T ss_pred HhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhh
Confidence 33333443331 112321 112 23455677889
Q ss_pred hhhHHHHHHHHHHhccCCCChhhHHHHHHHHHhhcChhhHHHHHHHhccCC------CCchhhHHHHHHHhhccCChHHH
Q 044770 215 LYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELP------NVRSKSYVLAIEAFGRIAQVSRA 288 (464)
Q Consensus 215 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~~~~l~~~~~~~g~~~~a 288 (464)
+..++++.|+.+...+.+....+-..+.++|...+++++|..+++.+.... +.+......|.-+|...+++++|
T Consensus 307 r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A 386 (822)
T PRK14574 307 QTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKA 386 (822)
T ss_pred hHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHH
Confidence 999999999999998877667788999999999999999999999986632 22222346788999999999999
Q ss_pred HHHHHHHHhccc-----------cCCh---hhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCccHHHHHHHHHHHHhcCC
Q 044770 289 EELWLEMQSVKQ-----------LKAT---EQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNL 354 (464)
Q Consensus 289 ~~~~~~~~~~~~-----------~~~~---~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~ 354 (464)
..+++.+.+... .|+. ..+..++..+.-.|+..+|.+.++++.... +-|......+...+...|.
T Consensus 387 ~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~a-P~n~~l~~~~A~v~~~Rg~ 465 (822)
T PRK14574 387 YQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTA-PANQNLRIALASIYLARDL 465 (822)
T ss_pred HHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCC
Confidence 999999987321 1211 134456777889999999999999998853 3377788888888999999
Q ss_pred hHHHHHHHHHhHHHHhhhhhcCCCC-cHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCcHH
Q 044770 355 VEEGFKALELGMKLITTKKVRSSTP-WLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTF 417 (464)
Q Consensus 355 ~~~a~~~~~~~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~ 417 (464)
+.+|.+.++.+ ....| +..+....+..+...|++.+|..+.+.+.+.. |+..
T Consensus 466 p~~A~~~~k~a---------~~l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~~--Pe~~ 518 (822)
T PRK14574 466 PRKAEQELKAV---------ESLAPRSLILERAQAETAMALQEWHQMELLTDDVISRS--PEDI 518 (822)
T ss_pred HHHHHHHHHHH---------hhhCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhC--CCch
Confidence 99999999777 33455 45666788888999999999999999888753 5554
No 26
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.75 E-value=1.2e-13 Score=117.77 Aligned_cols=358 Identities=11% Similarity=0.119 Sum_probs=208.7
Q ss_pred CCchhHHHHHHHHHhhcChHHHHHHhhhcCCC--CCchhHHHHHHHHHHhhCcHHHHHHHHHHHHHcCCCCchhhHHHHH
Q 044770 60 PKELDYSYLLEFTIKNHGISQGEKLFCCIPKD--YQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLI 137 (464)
Q Consensus 60 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~ 137 (464)
.+..++..||.++++-.+.+.|.+++++.... ..+..+||.+|.+-.- ....+++.+|....+.||..|+|+++
T Consensus 205 KT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~----~~~K~Lv~EMisqkm~Pnl~TfNalL 280 (625)
T KOG4422|consen 205 KTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSY----SVGKKLVAEMISQKMTPNLFTFNALL 280 (625)
T ss_pred CCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHh----hccHHHHHHHHHhhcCCchHhHHHHH
Confidence 35567777777777777777777777665544 3456666666655332 22256667777766777777777777
Q ss_pred HHhcCCCCccc----HHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhH-HHHHHHHHHh----CCCCC----cHhHHH
Q 044770 138 ILNSSPGRRKT----IPNILRQMKADKVAPHVSTFHILMKIEANDHNIEG-LMKVYSDMKR----SEVEP----NEVSYC 204 (464)
Q Consensus 138 ~~~~~~~~~~~----a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-a~~~~~~m~~----~~~~p----~~~~~~ 204 (464)
.+..+.|+++. |.+++.+|++.|+.|...+|..+|..+++.++..+ +..++.++.. ..++| |..-|.
T Consensus 281 ~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~ 360 (625)
T KOG4422|consen 281 SCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQ 360 (625)
T ss_pred HHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHH
Confidence 77777776554 34556666677777777777777777666666533 3333333322 11222 233455
Q ss_pred HHHHHHHhcChhhHHHHHHHHHHhcc----CCCC---hhhHHHHHHHHHhhcChhhHHHHHHHhcc-CCCCchhhHHHHH
Q 044770 205 ILATAHAVARLYTVAETYVEALEKSM----TGNN---WSTLDVLIILYGYLAKGKDLERIWATVQE-LPNVRSKSYVLAI 276 (464)
Q Consensus 205 ~li~~~~~~~~~~~a~~~~~~~~~~~----~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~l~ 276 (464)
..+..|.+..+.+.|.++..-+.... +.|+ ..-|..+..+.+.....+.....++.+.. ...+...+...++
T Consensus 361 ~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~l 440 (625)
T KOG4422|consen 361 SAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLL 440 (625)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHH
Confidence 56666666666666666555443221 2222 23455566666666666666666666654 3445555566666
Q ss_pred HHhhccCChHHHHHHHHHHHhccccCChhhHHHHHHHHHhcC-C-------------------hhH-HHHHHHHHHhCCC
Q 044770 277 EAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNG-F-------------------IDK-ASGLLKEMSMNGC 335 (464)
Q Consensus 277 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~-~-------------------~~~-a~~~~~~m~~~g~ 335 (464)
++..-.|.++-..++|.++...|...+...-.-++..+++.. + +.+ ....-.+|.+.
T Consensus 441 rA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~r~~-- 518 (625)
T KOG4422|consen 441 RALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYESQPIRQRAQ-- 518 (625)
T ss_pred HHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHhc--
Confidence 666667777777777777666553333333333333333332 1 111 11112233433
Q ss_pred CccHHHHHHHHHHHHhcCChHHHHHHHHHhHHHHhhhhhcCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCc
Q 044770 336 KPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKY 415 (464)
Q Consensus 336 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~ 415 (464)
.......+.+.-.+.+.|+.++|.+++....+.+ .+....|......-+++.-.+.+++..|..+++-|...++..-
T Consensus 519 ~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~---~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~~~n~~~~ 595 (625)
T KOG4422|consen 519 DWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKH---NKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLASAFNLPIC 595 (625)
T ss_pred cCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcC---CcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCchhh
Confidence 3445566777777899999999999999985321 1122333333344666777788899999999999987665332
Q ss_pred HHHHHHHHHHH
Q 044770 416 TFVYNTLIKAY 426 (464)
Q Consensus 416 ~~~~~~li~~~ 426 (464)
...-+.+...|
T Consensus 596 E~La~RI~e~f 606 (625)
T KOG4422|consen 596 EGLAQRIMEDF 606 (625)
T ss_pred hHHHHHHHHhc
Confidence 22333444444
No 27
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.74 E-value=6.6e-14 Score=131.00 Aligned_cols=408 Identities=13% Similarity=0.047 Sum_probs=211.6
Q ss_pred cChhchHHHHHHHHhhcchHHHHHHHHHHHHcCCCC-CCchhHHHHHHHHHhhcChHHHHHHhhhcCCCCCc--hhHHHH
Q 044770 24 VHRGEIFHSINRLRKLQLNKRALEVMEWVIRERPYR-PKELDYSYLLEFTIKNHGISQGEKLFCCIPKDYQN--ELLYNN 100 (464)
Q Consensus 24 ~~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~ 100 (464)
-+|..+..+...+.-.|+++.+.++...+....-.. .-...|-.+..+|-..|+++.|...|.+..+..++ +..+--
T Consensus 268 ~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~G 347 (1018)
T KOG2002|consen 268 ENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVG 347 (1018)
T ss_pred CCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccc
Confidence 355556666666666666666666666665522111 11234555666666666666666666555544332 233344
Q ss_pred HHHHHHhhCcHHHHHHHHHHHHHcCCCCchhhHHHHHHHhcCCC----CcccHHHHHHHHHhC-----------------
Q 044770 101 LVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPG----RRKTIPNILRQMKAD----------------- 159 (464)
Q Consensus 101 li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~----~~~~a~~~~~~~~~~----------------- 159 (464)
+...+...|+++.+...|+..... .+-+..+...|...|...+ ..+.|..++....+.
T Consensus 348 lgQm~i~~~dle~s~~~fEkv~k~-~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e~ 426 (1018)
T KOG2002|consen 348 LGQMYIKRGDLEESKFCFEKVLKQ-LPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLEQ 426 (1018)
T ss_pred hhHHHHHhchHHHHHHHHHHHHHh-CcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHh
Confidence 555566666666666666665554 2333444444444444442 223333333333322
Q ss_pred --------------------CCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhC---CCCCcH------hHHHHHHHHH
Q 044770 160 --------------------KVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRS---EVEPNE------VSYCILATAH 210 (464)
Q Consensus 160 --------------------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~---~~~p~~------~~~~~li~~~ 210 (464)
+-++.....|.+.......|++..|...|...... ...+|. .+-..+..+.
T Consensus 427 ~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~ 506 (1018)
T KOG2002|consen 427 TDPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLL 506 (1018)
T ss_pred cChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHH
Confidence 22333344444444444455555555555444322 011111 1111122223
Q ss_pred HhcChhhHHHHHHHHHHhccCCCChhhHHHHHHHHHhhcChhhHHHHHHHhccCCCCchhhHHHHHHHhhccCChHHHHH
Q 044770 211 AVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEE 290 (464)
Q Consensus 211 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 290 (464)
-..++.+.|.+.|..+.+.. +.-...|.-++......+...+|...++........++..++.+...+.+...+..|.+
T Consensus 507 E~l~~~~~A~e~Yk~Ilkeh-p~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k 585 (1018)
T KOG2002|consen 507 EELHDTEVAEEMYKSILKEH-PGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAKK 585 (1018)
T ss_pred HhhhhhhHHHHHHHHHHHHC-chhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhccccc
Confidence 33344445555555444431 11122222222222223445555555655555555555556556656666666666666
Q ss_pred HHHHHHhccc-cCChhhHHHHHHHHHh------------cCChhHHHHHHHHHHhCCCCccHHHHHHHHHHHHhcCChHH
Q 044770 291 LWLEMQSVKQ-LKATEQYNSVISVYCK------------NGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEE 357 (464)
Q Consensus 291 ~~~~~~~~~~-~~~~~~~~~li~~~~~------------~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~ 357 (464)
-|+.+.+.-. .+|+.+.-.|...|.+ .+..++|+++|.+.++... -|...-+-+.-.++..|++.+
T Consensus 586 ~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dp-kN~yAANGIgiVLA~kg~~~~ 664 (1018)
T KOG2002|consen 586 KFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDP-KNMYAANGIGIVLAEKGRFSE 664 (1018)
T ss_pred HHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCc-chhhhccchhhhhhhccCchH
Confidence 5555443211 1344443344443322 2456778888887777432 255666666677788888888
Q ss_pred HHHHHHHhHHHHhhhhhcCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHHHc-CCCCcHHHHHHHHHHHHHcCCC--hh
Q 044770 358 GFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKA-NYTKYTFVYNTLIKAYVKAKIN--DP 434 (464)
Q Consensus 358 a~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~p~~~~~~~li~~~~~~g~~--a~ 434 (464)
|..+|.++. .... -...+|-.+.++|..+|++..|+++|+...+. .-.-+..+.+.|.+++.+.|.. |.
T Consensus 665 A~dIFsqVr-------Ea~~-~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak 736 (1018)
T KOG2002|consen 665 ARDIFSQVR-------EATS-DFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAK 736 (1018)
T ss_pred HHHHHHHHH-------HHHh-hCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHH
Confidence 888888873 2222 12234457888888888888888888866543 3333555788888888888863 55
Q ss_pred HHHHHHHh
Q 044770 435 NLLRRMIL 442 (464)
Q Consensus 435 ~~~~~m~~ 442 (464)
+.+.....
T Consensus 737 ~~ll~a~~ 744 (1018)
T KOG2002|consen 737 EALLKARH 744 (1018)
T ss_pred HHHHHHHH
Confidence 54444443
No 28
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.72 E-value=8.5e-14 Score=130.27 Aligned_cols=404 Identities=12% Similarity=0.058 Sum_probs=272.2
Q ss_pred chHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCCc--hhHHHHHHHHHhhcChHHHHHHhhhcCCC--------------
Q 044770 28 EIFHSINRLRKLQLNKRALEVMEWVIRERPYRPKE--LDYSYLLEFTIKNHGISQGEKLFCCIPKD-------------- 91 (464)
Q Consensus 28 ~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-------------- 91 (464)
.+..+.+++-..|++++|...|-...+. .++. ..+--+..++.+.|+++.+...|+.+...
T Consensus 309 s~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~---~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~L 385 (1018)
T KOG2002|consen 309 SFYQLGRSYHAQGDFEKAFKYYMESLKA---DNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCL 385 (1018)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHcc---CCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhH
Confidence 3455555555555555555555555442 2222 22233444555555555555555544333
Q ss_pred -------------------------CCchhHHHHHHHHHHhhCcHHHHHHHHHHHH----HcCCCCchhhHHHHHHHhcC
Q 044770 92 -------------------------YQNELLYNNLVIACLDKGVIKLSLEYMKKMR----VLGHSISYLVFNRLIILNSS 142 (464)
Q Consensus 92 -------------------------~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~----~~~~~~~~~~~~~l~~~~~~ 142 (464)
+.+...|-.+...+... ++..++..|.... ..+-.+.....|.+......
T Consensus 386 ya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e~~-d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~ 464 (1018)
T KOG2002|consen 386 YAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLEQT-DPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFR 464 (1018)
T ss_pred HHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHhc-ChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHH
Confidence 22444454444444333 3333355554433 44555778888999999999
Q ss_pred CCCcccHHHHHHHHHhC---CCCCChh------hHHHHHHHHHccCChhHHHHHHHHHHhCCCCCcHhH-HHHHHHHHHh
Q 044770 143 PGRRKTIPNILRQMKAD---KVAPHVS------TFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVS-YCILATAHAV 212 (464)
Q Consensus 143 ~~~~~~a~~~~~~~~~~---~~~~~~~------~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~-~~~li~~~~~ 212 (464)
.|++..|...|...... ...+|.. +--.+...+-..++++.|.+.|..+... .|+-+. |--+....-.
T Consensus 465 ~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilke--hp~YId~ylRl~~ma~~ 542 (1018)
T KOG2002|consen 465 LGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKE--HPGYIDAYLRLGCMARD 542 (1018)
T ss_pred hcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHH--CchhHHHHHHhhHHHHh
Confidence 99999999999998764 1233332 2223566677788999999999999876 565443 3333322334
Q ss_pred cChhhHHHHHHHHHHhccCCCChhhHHHHHHHHHhhcChhhHHHHHHHhccCCC--CchhhHHHHHHHhh----------
Q 044770 213 ARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPN--VRSKSYVLAIEAFG---------- 280 (464)
Q Consensus 213 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~l~~~~~---------- 280 (464)
.+...+|...++..... ...++..++.+...+.....+..|.+-|..+..... .++.+..+|.+.|.
T Consensus 543 k~~~~ea~~~lk~~l~~-d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ 621 (1018)
T KOG2002|consen 543 KNNLYEASLLLKDALNI-DSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNP 621 (1018)
T ss_pred ccCcHHHHHHHHHHHhc-ccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccCh
Confidence 56778899999888765 445667777788889998889888887776665332 34444445555443
Q ss_pred --ccCChHHHHHHHHHHHhccccCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCccHHHHHHHHHHHHhcCChHHH
Q 044770 281 --RIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEG 358 (464)
Q Consensus 281 --~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a 358 (464)
..+..++|.++|.++.+ ..+.|...-|.+...++..|++.+|..+|.+.++... -+..+|..+..+|..+|++..|
T Consensus 622 ek~kk~~~KAlq~y~kvL~-~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~-~~~dv~lNlah~~~e~~qy~~A 699 (1018)
T KOG2002|consen 622 EKEKKHQEKALQLYGKVLR-NDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATS-DFEDVWLNLAHCYVEQGQYRLA 699 (1018)
T ss_pred HHHHHHHHHHHHHHHHHHh-cCcchhhhccchhhhhhhccCchHHHHHHHHHHHHHh-hCCceeeeHHHHHHHHHHHHHH
Confidence 23456789999999888 4556888889999999999999999999999998654 2456788899999999999999
Q ss_pred HHHHHHhHHHHhhhhhcCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCcHHHHHHHHHHHHHc-----C-C-
Q 044770 359 FKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKA-----K-I- 431 (464)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~-----g-~- 431 (464)
+++|+..+ .+..-..+..+.+.|.+++.+.|++.+|.+.+.........-...-||..+...--. + +
T Consensus 700 IqmYe~~l------kkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~v~FN~a~v~kkla~s~lr~~k~ 773 (1018)
T KOG2002|consen 700 IQMYENCL------KKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNTSVKFNLALVLKKLAESILRLEKR 773 (1018)
T ss_pred HHHHHHHH------HHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccchHHhHHHHHHHHHHHHHHhcccc
Confidence 99999996 445556678888999999999999999999988877755443445677655543221 1 1
Q ss_pred -------------ChhHHHHHHHhCCCC
Q 044770 432 -------------NDPNLLRRMILGGAR 446 (464)
Q Consensus 432 -------------~a~~~~~~m~~~~~~ 446 (464)
.|.++|..|...+-.
T Consensus 774 t~eev~~a~~~le~a~r~F~~ls~~~d~ 801 (1018)
T KOG2002|consen 774 TLEEVLEAVKELEEARRLFTELSKNGDK 801 (1018)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 146778888876544
No 29
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.71 E-value=1e-13 Score=137.64 Aligned_cols=332 Identities=7% Similarity=-0.086 Sum_probs=215.9
Q ss_pred ccChhchHHHHHHHHhhcchHHHHHHHHHHHHc-CCCCCCchhHHHHHHHHHhhcC---hHHHHHH--------------
Q 044770 23 PVHRGEIFHSINRLRKLQLNKRALEVMEWVIRE-RPYRPKELDYSYLLEFTIKNHG---ISQGEKL-------------- 84 (464)
Q Consensus 23 ~~~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~---~~~a~~~-------------- 84 (464)
|-+...+..+.-...+.|+.++|.++++..... ..-.++......++..|.+.+. ..++..+
T Consensus 373 ~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 452 (987)
T PRK09782 373 PANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQS 452 (987)
T ss_pred CCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHh
Confidence 345566666666777888888888888887651 1122233344466777777665 2223222
Q ss_pred -----------hhhcCCC-CC--chhHHHHHHHHHHhhCcHHHHHHHHHHHHHcCCCCchhhHHHHHHHhcCCCCcccHH
Q 044770 85 -----------FCCIPKD-YQ--NELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIP 150 (464)
Q Consensus 85 -----------~~~~~~~-~~--~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 150 (464)
+...... ++ +...|..+..++.. +++++|+..+.+.... .|+......+...+...|++++|.
T Consensus 453 ~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~--~Pd~~~~L~lA~al~~~Gr~eeAi 529 (987)
T PRK09782 453 QLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQR--QPDAWQHRAVAYQAYQVEDYATAL 529 (987)
T ss_pred hhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh--CCchHHHHHHHHHHHHCCCHHHHH
Confidence 1111111 23 45566777766665 6777788877777664 355444434444556788888888
Q ss_pred HHHHHHHhCCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCcHhHHHHHHHHHHhcChhhHHHHHHHHHHhcc
Q 044770 151 NILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSM 230 (464)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 230 (464)
..|+.+... +|+...+..+...+.+.|++++|...|++..+.. +++...+..+.......|++++|...+++..+..
T Consensus 530 ~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~-P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~ 606 (987)
T PRK09782 530 AAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG-LGDNALYWWLHAQRYIPGQPELALNDLTRSLNIA 606 (987)
T ss_pred HHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhC
Confidence 888877553 4444555566677778888888888888877653 1222223333333445588888888888877643
Q ss_pred CCCChhhHHHHHHHHHhhcChhhHHHHHHHhccCCCCchhhHHHHHHHhhccCChHHHHHHHHHHHhccccCChhhHHHH
Q 044770 231 TGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSV 310 (464)
Q Consensus 231 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 310 (464)
|+...+..+..++.+.|+.++|...++......+.+...++.+...+...|++++|...|+...+. .+-+...+..+
T Consensus 607 --P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l-~P~~~~a~~nL 683 (987)
T PRK09782 607 --PSANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKG-LPDDPALIRQL 683 (987)
T ss_pred --CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHHHHHHH
Confidence 456777777888888888888888888888877777777888888888888888888888887773 33456677788
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCccH-HHHHHHHHHHHhcCChHHHHHHHHHh
Q 044770 311 ISVYCKNGFIDKASGLLKEMSMNGCKPNA-ITYRHLALGCFKSNLVEEGFKALELG 365 (464)
Q Consensus 311 i~~~~~~~~~~~a~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~ 365 (464)
..++...|++++|...|++..+ ..|+. .+.-.......+..+++.+.+-++..
T Consensus 684 A~al~~lGd~~eA~~~l~~Al~--l~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~ 737 (987)
T PRK09782 684 AYVNQRLDDMAATQHYARLVID--DIDNQALITPLTPEQNQQRFNFRRLHEEVGRR 737 (987)
T ss_pred HHHHHHCCCHHHHHHHHHHHHh--cCCCCchhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 8888888888888888888877 34543 33333344444555566666655555
No 30
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.69 E-value=1.5e-13 Score=125.38 Aligned_cols=283 Identities=10% Similarity=0.028 Sum_probs=217.5
Q ss_pred hcChHHHHHHhhhcCCCCCchh-HHHHHHHHHHhhCcHHHHHHHHHHHHHcCCCCchhhHH--HHHHHhcCCCCcccHHH
Q 044770 75 NHGISQGEKLFCCIPKDYQNEL-LYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFN--RLIILNSSPGRRKTIPN 151 (464)
Q Consensus 75 ~g~~~~a~~~~~~~~~~~~~~~-~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~--~l~~~~~~~~~~~~a~~ 151 (464)
.|+++.|.+.+.......++.. .|.....+..+.|+++.|.+.+.++.+. .|+..... .....+...|+++.|..
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al~ 174 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAARH 174 (398)
T ss_pred CCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHHH
Confidence 5999999999888766433333 3433455558899999999999999874 45554333 33567889999999999
Q ss_pred HHHHHHhCCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCcH-------hHHHHHHHHHHhcChhhHHHHHHH
Q 044770 152 ILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNE-------VSYCILATAHAVARLYTVAETYVE 224 (464)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~-------~~~~~li~~~~~~~~~~~a~~~~~ 224 (464)
.++.+.+.. +-+......+...|.+.|++++|.+++..+.+.+..++. .+|..++.......+.+...++++
T Consensus 175 ~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~ 253 (398)
T PRK10747 175 GVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWK 253 (398)
T ss_pred HHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 999998876 666778889999999999999999999999987654322 123333443344445556666666
Q ss_pred HHHhccCCCChhhHHHHHHHHHhhcChhhHHHHHHHhccCCCCchhhHHHHHHHhhccCChHHHHHHHHHHHhccccCCh
Q 044770 225 ALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKAT 304 (464)
Q Consensus 225 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 304 (464)
.+.+. .+.++.....+...+...|+.++|.++++...+. +++. -..++.+....++.+++.+..+...+. .+-|+
T Consensus 254 ~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~-~~~~--~l~~l~~~l~~~~~~~al~~~e~~lk~-~P~~~ 328 (398)
T PRK10747 254 NQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR-QYDE--RLVLLIPRLKTNNPEQLEKVLRQQIKQ-HGDTP 328 (398)
T ss_pred hCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-CCCH--HHHHHHhhccCCChHHHHHHHHHHHhh-CCCCH
Confidence 65443 4567788889999999999999999999888773 3333 222344555669999999999998874 44467
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCccHHHHHHHHHHHHhcCChHHHHHHHHHhHH
Q 044770 305 EQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMK 367 (464)
Q Consensus 305 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 367 (464)
..+..+...+.+.+++++|.+.|+...+ ..|+..++..+...+.+.|+.++|.+++++.+.
T Consensus 329 ~l~l~lgrl~~~~~~~~~A~~~le~al~--~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 329 LLWSTLGQLLMKHGEWQEASLAFRAALK--QRPDAYDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 7788999999999999999999999998 579999999999999999999999999998854
No 31
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.69 E-value=6e-12 Score=113.16 Aligned_cols=407 Identities=11% Similarity=0.047 Sum_probs=315.4
Q ss_pred HHHHhhcCccChhchHHHHHHHHhhcchHHHHHHHHHHHHcCCCCC--CchhHHHHHHHHHhhcChHHHHHHhhhcCCCC
Q 044770 15 QSWMREGFPVHRGEIFHSINRLRKLQLNKRALEVMEWVIRERPYRP--KELDYSYLLEFTIKNHGISQGEKLFCCIPKDY 92 (464)
Q Consensus 15 ~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 92 (464)
.++...|+..+.+.+..=...|-..|.+-.+..+....+. -|+.- -..+|..-...|.+.+-++-|+.+|....+.+
T Consensus 468 ~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avig-igvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvf 546 (913)
T KOG0495|consen 468 SELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIG-IGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVF 546 (913)
T ss_pred HHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHh-hccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhc
Confidence 3455567777777777777777777777777777666655 33321 23467777778888888888888888887774
Q ss_pred C-chhHHHHHHHHHHhhCcHHHHHHHHHHHHHcCCCCchhhHHHHHHHhcCCCCcccHHHHHHHHHhCCCCCChhhHHHH
Q 044770 93 Q-NELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHIL 171 (464)
Q Consensus 93 ~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 171 (464)
| +...|......--..|..++...+|++.... ++-....|-....-+...|++..|..++.+..+.. +.+...|-.-
T Consensus 547 p~k~slWlra~~~ek~hgt~Esl~Allqkav~~-~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~-pnseeiwlaa 624 (913)
T KOG0495|consen 547 PCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQ-CPKAEILWLMYAKEKWKAGDVPAARVILDQAFEAN-PNSEEIWLAA 624 (913)
T ss_pred cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHh-CCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhC-CCcHHHHHHH
Confidence 4 5678888888888889999999999999886 44456667777777888899999999999998865 4567788888
Q ss_pred HHHHHccCChhHHHHHHHHHHhCCCCCcHhHHHHHHHHHHhcChhhHHHHHHHHHHhccCCCChhhHHHHHHHHHhhcCh
Q 044770 172 MKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKG 251 (464)
Q Consensus 172 ~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 251 (464)
+.......++++|..+|.+.... .|+...|.--+..---.+..++|.+++++.++. ++.-...|..+.+.+-+.++.
T Consensus 625 vKle~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~-fp~f~Kl~lmlGQi~e~~~~i 701 (913)
T KOG0495|consen 625 VKLEFENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVEEALRLLEEALKS-FPDFHKLWLMLGQIEEQMENI 701 (913)
T ss_pred HHHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh-CCchHHHHHHHhHHHHHHHHH
Confidence 88889999999999999988765 567767665555555578899999999988876 545567788888899999999
Q ss_pred hhHHHHHHHhccCCCCchhhHHHHHHHhhccCChHHHHHHHHHHHhccccCChhhHHHHHHHHHhcCChhHHHHHHHHHH
Q 044770 252 KDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMS 331 (464)
Q Consensus 252 ~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 331 (464)
+.|...|..-.+..+.....|..|...=-+.|.+-+|..+|++..-.+ +.+...|-..|..-.+.|..+.|..++.+.+
T Consensus 702 e~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkN-Pk~~~lwle~Ir~ElR~gn~~~a~~lmakAL 780 (913)
T KOG0495|consen 702 EMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN-PKNALLWLESIRMELRAGNKEQAELLMAKAL 780 (913)
T ss_pred HHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC-CCcchhHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 999999888877777777788888888888999999999999988744 4588899999999999999999999998888
Q ss_pred hCCCCccHHHHHHHHHHHHhcCChHHHHHHHHHhHHHHhhhhhcCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHHHcC
Q 044770 332 MNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKAN 411 (464)
Q Consensus 332 ~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 411 (464)
+. ++-+...|..-|....+.++-....+.+.+. .-|..+.-.+...+....+++.|.+.|.+..+.+
T Consensus 781 Qe-cp~sg~LWaEaI~le~~~~rkTks~DALkkc------------e~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d 847 (913)
T KOG0495|consen 781 QE-CPSSGLLWAEAIWLEPRPQRKTKSIDALKKC------------EHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKD 847 (913)
T ss_pred Hh-CCccchhHHHHHHhccCcccchHHHHHHHhc------------cCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 75 3335566777776666666655554444332 3344455588888889999999999999999865
Q ss_pred CCCcH-HHHHHHHHHHHHcCCC--hhHHHHHHHhC
Q 044770 412 YTKYT-FVYNTLIKAYVKAKIN--DPNLLRRMILG 443 (464)
Q Consensus 412 ~~p~~-~~~~~li~~~~~~g~~--a~~~~~~m~~~ 443 (464)
||. -+|.-+..-+.++|.+ -.+++......
T Consensus 848 --~d~GD~wa~fykfel~hG~eed~kev~~~c~~~ 880 (913)
T KOG0495|consen 848 --PDNGDAWAWFYKFELRHGTEEDQKEVLKKCETA 880 (913)
T ss_pred --CccchHHHHHHHHHHHhCCHHHHHHHHHHHhcc
Confidence 554 4999999999999964 56777777664
No 32
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.69 E-value=3.4e-16 Score=136.60 Aligned_cols=257 Identities=9% Similarity=0.010 Sum_probs=71.9
Q ss_pred HHHHHHhhcChHHHHHHhhhc-CCC-CC-chhHHHHHHHHHHhhCcHHHHHHHHHHHHHcCCCCchhhHHHHHHHhcCCC
Q 044770 68 LLEFTIKNHGISQGEKLFCCI-PKD-YQ-NELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPG 144 (464)
Q Consensus 68 l~~~~~~~g~~~~a~~~~~~~-~~~-~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~ 144 (464)
+...+.+.|++++|.++++.. ... +| +...|..+...+...++++.|...++++...+.. +...+..++.. ...+
T Consensus 14 ~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~~ 91 (280)
T PF13429_consen 14 LARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQDG 91 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-cccc
Confidence 344555555555555555332 222 12 3333444444444455555555555555544321 33344444444 4555
Q ss_pred CcccHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhCC-CCCcHhHHHHHHHHHHhcChhhHHHHHH
Q 044770 145 RRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSE-VEPNEVSYCILATAHAVARLYTVAETYV 223 (464)
Q Consensus 145 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~-~~p~~~~~~~li~~~~~~~~~~~a~~~~ 223 (464)
++++|.+++....+. .++...+..++..+.+.++++++..+++.+.... .+++...|..+...+.+.|+.++|...+
T Consensus 92 ~~~~A~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~ 169 (280)
T PF13429_consen 92 DPEEALKLAEKAYER--DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDY 169 (280)
T ss_dssp ----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred ccccccccccccccc--ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 555555555444332 2333444444555555555555555555544321 2234444444555555555555555555
Q ss_pred HHHHhccCCCChhhHHHHHHHHHhhcChhhHHHHHHHhccCCCCchhhHHHHHHHhhccCChHHHHHHHHHHHhccccCC
Q 044770 224 EALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKA 303 (464)
Q Consensus 224 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 303 (464)
++..+ ..+.+......++..+...|+.+++..++....+.. +.|
T Consensus 170 ~~al~-----------------------------------~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~ 213 (280)
T PF13429_consen 170 RKALE-----------------------------------LDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDD 213 (280)
T ss_dssp HHHHH-----------------------------------H-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTS
T ss_pred HHHHH-----------------------------------cCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCH
Confidence 55544 333444445555556666666666666666555522 345
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCccHHHHHHHHHHHHhcCChHHHHHHHHHh
Q 044770 304 TEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELG 365 (464)
Q Consensus 304 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 365 (464)
+..|..+..+|...|+.++|+.+|++..... +.|+.....+..++...|+.++|.++..++
T Consensus 214 ~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~-p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~ 274 (280)
T PF13429_consen 214 PDLWDALAAAYLQLGRYEEALEYLEKALKLN-PDDPLWLLAYADALEQAGRKDEALRLRRQA 274 (280)
T ss_dssp CCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHT---------------
T ss_pred HHHHHHHHHHhcccccccccccccccccccc-cccccccccccccccccccccccccccccc
Confidence 5556666666666666666666666666531 225555566666666666666666666555
No 33
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.68 E-value=1.9e-13 Score=124.75 Aligned_cols=284 Identities=9% Similarity=-0.017 Sum_probs=216.3
Q ss_pred hCcHHHHHHHHHHHHHcCCCCchhhHHHHHHHhcCCCCcccHHHHHHHHHhCCCCCChhhHH--HHHHHHHccCChhHHH
Q 044770 108 KGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFH--ILMKIEANDHNIEGLM 185 (464)
Q Consensus 108 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~~~~~~a~ 185 (464)
.|+++.|.+.+....+..-.| ...|........+.|+++.|...+.++.+. .|+...+. .....+...|+++.|.
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p-~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al 173 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQP-VVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAAR 173 (398)
T ss_pred CCCHHHHHHHHHHHHhcccch-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHH
Confidence 699999998887765542122 223333445558999999999999999874 56654333 3367888999999999
Q ss_pred HHHHHHHhCCCCCcHhHHHHHHHHHHhcChhhHHHHHHHHHHhccCCCCh-------hhHHHHHHHHHhhcChhhHHHHH
Q 044770 186 KVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNW-------STLDVLIILYGYLAKGKDLERIW 258 (464)
Q Consensus 186 ~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~a~~~~ 258 (464)
..++++.+.. +-+...+..+...|.+.|++++|..++..+.+.+..++. .+|..++.......+.+...++|
T Consensus 174 ~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w 252 (398)
T PRK10747 174 HGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWW 252 (398)
T ss_pred HHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 9999998875 335677888999999999999999999999988655332 13333344444455567777788
Q ss_pred HHhccCCCCchhhHHHHHHHhhccCChHHHHHHHHHHHhccccCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcc
Q 044770 259 ATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPN 338 (464)
Q Consensus 259 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~ 338 (464)
+.+....+.++.....+...+...|+.++|.+++++..+. +|+. --.++.+....++.+++++..+...+.. +-|
T Consensus 253 ~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~--~l~~l~~~l~~~~~~~al~~~e~~lk~~-P~~ 327 (398)
T PRK10747 253 KNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDE--RLVLLIPRLKTNNPEQLEKVLRQQIKQH-GDT 327 (398)
T ss_pred HhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCH--HHHHHHhhccCCChHHHHHHHHHHHhhC-CCC
Confidence 8877766667777889999999999999999999988873 3443 2223444456689999999999988753 225
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHhHHHHhhhhhcCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHHH
Q 044770 339 AITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKK 409 (464)
Q Consensus 339 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 409 (464)
...+..+...|.+.+++++|.+.|+.+ ....|+...+..+...+.+.|+.++|.+++++-..
T Consensus 328 ~~l~l~lgrl~~~~~~~~~A~~~le~a---------l~~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 328 PLLWSTLGQLLMKHGEWQEASLAFRAA---------LKQRPDAYDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHH---------HhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 566778888899999999999999998 45679998888999999999999999999987654
No 34
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.68 E-value=1.5e-12 Score=121.18 Aligned_cols=377 Identities=14% Similarity=0.050 Sum_probs=279.3
Q ss_pred hchHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCCchhHHHHHHHHHhhcChHHHHHHhhhcCCC-CCchhHHHHHHHHH
Q 044770 27 GEIFHSINRLRKLQLNKRALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQGEKLFCCIPKD-YQNELLYNNLVIAC 105 (464)
Q Consensus 27 ~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~li~~~ 105 (464)
.........+...|++++|.+++.+++++. +.....|..|...|-..|+.+++...+-.+... +.|...|-.+....
T Consensus 140 ~~ll~eAN~lfarg~~eeA~~i~~EvIkqd--p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls 217 (895)
T KOG2076|consen 140 RQLLGEANNLFARGDLEEAEEILMEVIKQD--PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLS 217 (895)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHhC--ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHH
Confidence 334445555566699999999999999965 457788999999999999999999887766555 34678999999999
Q ss_pred HhhCcHHHHHHHHHHHHHcCCCCchhhHHHHHHHhcCCCCcccHHHHHHHHHhCCCCCChhhHH----HHHHHHHccCCh
Q 044770 106 LDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFH----ILMKIEANDHNI 181 (464)
Q Consensus 106 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~----~l~~~~~~~~~~ 181 (464)
.+.|.++.|.-.|.+.++.. +++...+---+..|-+.|+...|...|.++.+...+.|..-+. ..++.+...++-
T Consensus 218 ~~~~~i~qA~~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~ 296 (895)
T KOG2076|consen 218 EQLGNINQARYCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNER 296 (895)
T ss_pred HhcccHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHH
Confidence 99999999999999999974 4555555566778999999999999999999864222322222 345667777778
Q ss_pred hHHHHHHHHHHhCC-CCCcHhHHHHHHHHHHhcChhhHHHHHHHHHHhcc---------------------------CCC
Q 044770 182 EGLMKVYSDMKRSE-VEPNEVSYCILATAHAVARLYTVAETYVEALEKSM---------------------------TGN 233 (464)
Q Consensus 182 ~~a~~~~~~m~~~~-~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~---------------------------~~~ 233 (464)
+.|.+.++.....+ -..+...+++++..+.+...++.+......+.... ..+
T Consensus 297 e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~ 376 (895)
T KOG2076|consen 297 ERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSY 376 (895)
T ss_pred HHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCc
Confidence 99999988876632 24456778899999999999999988877775511 112
Q ss_pred ChhhHHHHHHHHHhhcChhhHHHHHHHhcc---CCCCchhhHHHHHHHhhccCChHHHHHHHHHHHhccccCChhhHHHH
Q 044770 234 NWSTLDVLIILYGYLAKGKDLERIWATVQE---LPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSV 310 (464)
Q Consensus 234 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 310 (464)
+..+ -.++-++......+....+...+.. .+..+...|.-+.++|...|++.+|..+|..+.....--+...|-.+
T Consensus 377 ~l~v-~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~ 455 (895)
T KOG2076|consen 377 DLRV-IRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKL 455 (895)
T ss_pred cchh-HhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHH
Confidence 2222 1223344444445554444444443 24445567889999999999999999999999986655677899999
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCccH-HHHHHHHHHHHhcCChHHHHHHHHHhHHHH-hhhhhcCCCCcHHHHHHHH
Q 044770 311 ISVYCKNGFIDKASGLLKEMSMNGCKPNA-ITYRHLALGCFKSNLVEEGFKALELGMKLI-TTKKVRSSTPWLETTLSII 388 (464)
Q Consensus 311 i~~~~~~~~~~~a~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~p~~~~~~~li 388 (464)
..+|...|..++|.+.|...+. ..|+. ..-.+|-..+.+.|+.++|.+.++.+..-. ...+.....|+........
T Consensus 456 a~c~~~l~e~e~A~e~y~kvl~--~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~ 533 (895)
T KOG2076|consen 456 ARCYMELGEYEEAIEFYEKVLI--LAPDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRC 533 (895)
T ss_pred HHHHHHHhhHHHHHHHHHHHHh--cCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHH
Confidence 9999999999999999999988 45543 444566667889999999999999863110 0013445667777767777
Q ss_pred HHHHhcCChhhHHHHHHHHHH
Q 044770 389 EIFAEKGDVGNAENLFEELKK 409 (464)
Q Consensus 389 ~~~~~~g~~~~A~~~~~~m~~ 409 (464)
+.|...|+.++=..+-..|..
T Consensus 534 d~l~~~gk~E~fi~t~~~Lv~ 554 (895)
T KOG2076|consen 534 DILFQVGKREEFINTASTLVD 554 (895)
T ss_pred HHHHHhhhHHHHHHHHHHHHH
Confidence 888899998886666555543
No 35
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.67 E-value=6.7e-16 Score=134.75 Aligned_cols=261 Identities=13% Similarity=0.057 Sum_probs=107.5
Q ss_pred HHHHHHHHhhcchHHHHHHHHHHHHcCCCCCCchhHHHHHHHHHhhcChHHHHHHhhhcCCCCC-chhHHHHHHHHHHhh
Q 044770 30 FHSINRLRKLQLNKRALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQGEKLFCCIPKDYQ-NELLYNNLVIACLDK 108 (464)
Q Consensus 30 ~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~li~~~~~~ 108 (464)
..+...+.+.|++++|+++++........+.+...|..+.......++.+.|.+.++++....+ +...+..++.. ...
T Consensus 12 l~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 12 LRLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccc
Confidence 3678889999999999999966544221133455566666777789999999999999988733 45677777777 799
Q ss_pred CcHHHHHHHHHHHHHcCCCCchhhHHHHHHHhcCCCCcccHHHHHHHHHhC-CCCCChhhHHHHHHHHHccCChhHHHHH
Q 044770 109 GVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKAD-KVAPHVSTFHILMKIEANDHNIEGLMKV 187 (464)
Q Consensus 109 ~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 187 (464)
+++++|.+++....+.. ++...+..++..+.+.++++++..+++.+... ..+++...|..+...+.+.|+.++|++.
T Consensus 91 ~~~~~A~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~ 168 (280)
T PF13429_consen 91 GDPEEALKLAEKAYERD--GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRD 168 (280)
T ss_dssp -----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHH
T ss_pred ccccccccccccccccc--cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 99999999998876653 56677888888999999999999999998753 2356778888999999999999999999
Q ss_pred HHHHHhCCCCC-cHhHHHHHHHHHHhcChhhHHHHHHHHHHhccCCCChhhHHHHHHHHHhhcChhhHHHHHHHhccCCC
Q 044770 188 YSDMKRSEVEP-NEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPN 266 (464)
Q Consensus 188 ~~~m~~~~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 266 (464)
|++..+. .| |......++..+...|+.+++..+++...+.. +.++..+..+..++...|+.++|..+++......+
T Consensus 169 ~~~al~~--~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p 245 (280)
T PF13429_consen 169 YRKALEL--DPDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNP 245 (280)
T ss_dssp HHHHHHH---TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHST
T ss_pred HHHHHHc--CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhccccccccccccccccccccc
Confidence 9999887 45 47778889999999999999999998887763 55666667777777777777777777777777666
Q ss_pred CchhhHHHHHHHhhccCChHHHHHHHHHHH
Q 044770 267 VRSKSYVLAIEAFGRIAQVSRAEELWLEMQ 296 (464)
Q Consensus 267 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 296 (464)
.++.....+.+++...|+.++|.++..+..
T Consensus 246 ~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 246 DDPLWLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp T-HHHHHHHHHHHT----------------
T ss_pred cccccccccccccccccccccccccccccc
Confidence 666667777777777777777777766554
No 36
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.65 E-value=1.6e-12 Score=110.37 Aligned_cols=292 Identities=10% Similarity=0.016 Sum_probs=225.0
Q ss_pred hCcHHHHHHHHHHHHHcCCCCchhhHHHHHHHhcCCCCcccHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhHHHHH
Q 044770 108 KGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKV 187 (464)
Q Consensus 108 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 187 (464)
.|+|..|.+...+-.+.+-. ....|..-..+.-..|+.+.+-.++.+..+..-.++....-+........|+++.|..-
T Consensus 97 eG~~~qAEkl~~rnae~~e~-p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQ-PVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcc-hHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 68899999998887777644 34456666777888899999999998888753356667777778888889999999998
Q ss_pred HHHHHhCCCCCcHhHHHHHHHHHHhcChhhHHHHHHHHHHhccCCCCh-------hhHHHHHHHHHhhcChhhHHHHHHH
Q 044770 188 YSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNW-------STLDVLIILYGYLAKGKDLERIWAT 260 (464)
Q Consensus 188 ~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~a~~~~~~ 260 (464)
.+++.+.+. -+.........+|.+.|++.....++..+.+.+.-.+. .++..+++-....+..+.-...|+.
T Consensus 176 v~~ll~~~p-r~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~ 254 (400)
T COG3071 176 VDQLLEMTP-RHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKN 254 (400)
T ss_pred HHHHHHhCc-CChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHh
Confidence 888887753 35667888888999999999999999999888766553 4667777777777777777778888
Q ss_pred hccCCCCchhhHHHHHHHhhccCChHHHHHHHHHHHhccccCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCccHH
Q 044770 261 VQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAI 340 (464)
Q Consensus 261 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ 340 (464)
.......++..-.+++.-+.++|+.++|.++.++..+++..|+ -...-.+.+-++.+.-++..++.... .+-++-
T Consensus 255 ~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~----L~~~~~~l~~~d~~~l~k~~e~~l~~-h~~~p~ 329 (400)
T COG3071 255 QPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR----LCRLIPRLRPGDPEPLIKAAEKWLKQ-HPEDPL 329 (400)
T ss_pred ccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh----HHHHHhhcCCCCchHHHHHHHHHHHh-CCCChh
Confidence 8776666666677888888999999999999998888776665 11223345667777777777666553 223457
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHhHHHHhhhhhcCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCc
Q 044770 341 TYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKY 415 (464)
Q Consensus 341 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~ 415 (464)
.+.++...|.+.+.+.+|...|+.+ ....|+..+|+.+.+++.+.|+.++|.++.++....-.+|+
T Consensus 330 L~~tLG~L~~k~~~w~kA~~~leaA---------l~~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~~~~~~ 395 (400)
T COG3071 330 LLSTLGRLALKNKLWGKASEALEAA---------LKLRPSASDYAELADALDQLGEPEEAEQVRREALLLTRQPN 395 (400)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHH---------HhcCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCC
Confidence 7888888899999999999999977 56788999999999999999999999999887765434444
No 37
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.65 E-value=6.5e-13 Score=109.31 Aligned_cols=220 Identities=10% Similarity=0.000 Sum_probs=127.8
Q ss_pred hCcHHHHHHHHHHHHHcCCCCchhhHHHHHHHhcCCCCcccHHHHHHHHHhCCCCCChh------hHHHHHHHHHccCCh
Q 044770 108 KGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVS------TFHILMKIEANDHNI 181 (464)
Q Consensus 108 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~------~~~~l~~~~~~~~~~ 181 (464)
+.+.++|.+.|-+|.+.. +.+..+.-+|.+.|.+.|.+|.|+++.+.+.+ .||.. ..-.|..-|...|-+
T Consensus 48 s~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~---spdlT~~qr~lAl~qL~~Dym~aGl~ 123 (389)
T COG2956 48 SNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLE---SPDLTFEQRLLALQQLGRDYMAAGLL 123 (389)
T ss_pred hcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhc---CCCCchHHHHHHHHHHHHHHHHhhhh
Confidence 467788888888888743 34566667778888888888888888888876 34432 233456667788888
Q ss_pred hHHHHHHHHHHhCCCCCcHhHHHHHHHHHHhcChhhHHHHHHHHHHhccCCCCh----hhHHHHHHHHHhhcChhhHHHH
Q 044770 182 EGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNW----STLDVLIILYGYLAKGKDLERI 257 (464)
Q Consensus 182 ~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~ 257 (464)
|.|+.+|..+.+.+ ..-......|+..|-..++|++|+++-+++.+.+..+.. ..|.-+...+....+.+.|..+
T Consensus 124 DRAE~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~ 202 (389)
T COG2956 124 DRAEDIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRAREL 202 (389)
T ss_pred hHHHHHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHH
Confidence 99999998887654 224556778888888888999998888888776544432 1222233333333334444444
Q ss_pred HHHhccCCCCchhhHHHHHHHhhccCChHHHHHHHHHHHhccccCChhhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 044770 258 WATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSM 332 (464)
Q Consensus 258 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 332 (464)
+.......+.....-..+.+.+...|+++.|.+.++.+.+.+..--+.+...+..+|...|+.++....+.++.+
T Consensus 203 l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~ 277 (389)
T COG2956 203 LKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAME 277 (389)
T ss_pred HHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 444433333333333334444444444444444444444433222223334444444444444444444444443
No 38
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.65 E-value=7.9e-13 Score=121.45 Aligned_cols=290 Identities=9% Similarity=-0.067 Sum_probs=213.8
Q ss_pred HhhcChHHHHHHhhhcCCCCCc-hhHHHHHHHHHHhhCcHHHHHHHHHHHHHcCCCCchh--hHHHHHHHhcCCCCcccH
Q 044770 73 IKNHGISQGEKLFCCIPKDYQN-ELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYL--VFNRLIILNSSPGRRKTI 149 (464)
Q Consensus 73 ~~~g~~~~a~~~~~~~~~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~--~~~~l~~~~~~~~~~~~a 149 (464)
...|+++.|.+.+.+..+..|+ ...+-....+....|+++.|.+.+.+..+.. |+.. ........+...|+++.|
T Consensus 95 ~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~--p~~~l~~~~~~a~l~l~~~~~~~A 172 (409)
T TIGR00540 95 LAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELA--GNDNILVEIARTRILLAQNELHAA 172 (409)
T ss_pred HhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CcCchHHHHHHHHHHHHCCCHHHH
Confidence 3579999999999888776554 3444555677888899999999999987653 4443 344457778889999999
Q ss_pred HHHHHHHHhCCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCcHhHH-HHHHHHH---HhcChhhHHHHHHHH
Q 044770 150 PNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSY-CILATAH---AVARLYTVAETYVEA 225 (464)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~-~~li~~~---~~~~~~~~a~~~~~~ 225 (464)
...++.+.+.. +-+......+...+.+.|++++|.+.+..+.+.++. +...+ ..-..++ ...+..+.+.+.+..
T Consensus 173 l~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~ 250 (409)
T TIGR00540 173 RHGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQKAEIGLLDEAMADEGIDGLLN 250 (409)
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 99999999875 556778889999999999999999999999988754 33323 1111221 333334444445555
Q ss_pred HHhccC---CCChhhHHHHHHHHHhhcChhhHHHHHHHhccCCCCchhhHHHHHHH--hhccCChHHHHHHHHHHHhccc
Q 044770 226 LEKSMT---GNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSKSYVLAIEA--FGRIAQVSRAEELWLEMQSVKQ 300 (464)
Q Consensus 226 ~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~a~~~~~~~~~~~~ 300 (464)
+..... +.++..+..+...+...|+.+.|.++++...+..+.+......++.. ....++.+.+.+.++...+. .
T Consensus 251 ~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~-~ 329 (409)
T TIGR00540 251 WWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKN-V 329 (409)
T ss_pred HHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHh-C
Confidence 554422 23778888899999999999999999999888544443211112222 23457888899999887763 3
Q ss_pred cCCh--hhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCccHHHHHHHHHHHHhcCChHHHHHHHHHhHH
Q 044770 301 LKAT--EQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMK 367 (464)
Q Consensus 301 ~~~~--~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 367 (464)
+-|+ ....++...+.+.|++++|.+.|+........|+...+..+...+.+.|+.++|.++|++.+.
T Consensus 330 p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 330 DDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred CCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3345 567788999999999999999999544433678998899999999999999999999998754
No 39
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.63 E-value=6.6e-11 Score=102.42 Aligned_cols=386 Identities=11% Similarity=0.052 Sum_probs=269.7
Q ss_pred ChhchHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCCchhHHHHHHHHHhhcChHHHHHHhhhcCCCCCchhH-HHHHHH
Q 044770 25 HRGEIFHSINRLRKLQLNKRALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQGEKLFCCIPKDYQNELL-YNNLVI 103 (464)
Q Consensus 25 ~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~li~ 103 (464)
|+..+.-.-..+.+.|....|...|....... +..|.+.+....-..+.+.+..+....+.. +... =--+..
T Consensus 163 D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~-----P~~W~AWleL~~lit~~e~~~~l~~~l~~~--~h~M~~~F~~~ 235 (559)
T KOG1155|consen 163 DEFLLYLYGVVLKELGLLSLAIDSFVEVVNRY-----PWFWSAWLELSELITDIEILSILVVGLPSD--MHWMKKFFLKK 235 (559)
T ss_pred hhHHHHHHHHHHHhhchHHHHHHHHHHHHhcC-----CcchHHHHHHHHhhchHHHHHHHHhcCccc--chHHHHHHHHH
Confidence 33333333344556788888888888877533 233444444333333444444443333321 1111 112345
Q ss_pred HHHhhCcHHHHHHHHHHHHHcCCCCchhhHHHHHHHhcCCCCcccHHHHHHHHHhCCC--CCChhhHHHHHHHHHccCCh
Q 044770 104 ACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKV--APHVSTFHILMKIEANDHNI 181 (464)
Q Consensus 104 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~ 181 (464)
++....+.+++++-.+.....|++-+...-+....+.-...|++.|+.+|+++.+... --|..+|..++- ++..+-
T Consensus 236 a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LY--v~~~~s 313 (559)
T KOG1155|consen 236 AYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLY--VKNDKS 313 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHH--HHhhhH
Confidence 6666778899999999999988876666556666667778899999999999988631 135667776663 333222
Q ss_pred hHHHHHHHHHHhCCCCCcHhHHHHHHHHHHhcChhhHHHHHHHHHHhccCCCChhhHHHHHHHHHhhcChhhHHHHHHHh
Q 044770 182 EGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATV 261 (464)
Q Consensus 182 ~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 261 (464)
. +.++.+-.-.=-+--+.|..++.+-|.-.++.++|..+|++.++.+. .....|+.+.+-|....+...|...++..
T Consensus 314 k--Ls~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp-~~~~aWTLmGHEyvEmKNt~AAi~sYRrA 390 (559)
T KOG1155|consen 314 K--LSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNP-KYLSAWTLMGHEYVEMKNTHAAIESYRRA 390 (559)
T ss_pred H--HHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCc-chhHHHHHhhHHHHHhcccHHHHHHHHHH
Confidence 1 22222211111133456788888899999999999999999988643 34578889999999999999999999999
Q ss_pred ccCCCCchhhHHHHHHHhhccCChHHHHHHHHHHHhccccCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCccHHH
Q 044770 262 QELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAIT 341 (464)
Q Consensus 262 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~ 341 (464)
.+..+.|-..|-.|.++|.-.+.+.=|+-.|++.... .+-|...|.+|..+|.+.++.++|+..|......|- .+...
T Consensus 391 vdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~-kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~d-te~~~ 468 (559)
T KOG1155|consen 391 VDINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALEL-KPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGD-TEGSA 468 (559)
T ss_pred HhcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhc-CCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccc-cchHH
Confidence 9999999999999999999999999999999999983 445899999999999999999999999999998653 36688
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHhHHHHhhhhhcCCCC-cHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCcHHHHH
Q 044770 342 YRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTP-WLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYN 420 (464)
Q Consensus 342 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~ 420 (464)
+..+...+-+.++.++|.+.+++-++... ......| .....--|..-+.+.+++++|.......... .+...-=+
T Consensus 469 l~~LakLye~l~d~~eAa~~yek~v~~~~--~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~--~~e~eeak 544 (559)
T KOG1155|consen 469 LVRLAKLYEELKDLNEAAQYYEKYVEVSE--LEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKG--ETECEEAK 544 (559)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHH--hhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcC--CchHHHHH
Confidence 99999999999999999999999876442 2223344 3333344667777888888887765554442 23333334
Q ss_pred HHHHHHHH
Q 044770 421 TLIKAYVK 428 (464)
Q Consensus 421 ~li~~~~~ 428 (464)
.|++.+.+
T Consensus 545 ~LlReir~ 552 (559)
T KOG1155|consen 545 ALLREIRK 552 (559)
T ss_pred HHHHHHHH
Confidence 44444433
No 40
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.63 E-value=2.2e-12 Score=118.54 Aligned_cols=287 Identities=10% Similarity=-0.015 Sum_probs=202.8
Q ss_pred HhhCcHHHHHHHHHHHHHcCCCCch-hhHHHHHHHhcCCCCcccHHHHHHHHHhCCCCCChh--hHHHHHHHHHccCChh
Q 044770 106 LDKGVIKLSLEYMKKMRVLGHSISY-LVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVS--TFHILMKIEANDHNIE 182 (464)
Q Consensus 106 ~~~~~~~~a~~~~~~m~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~ 182 (464)
...|+++.|.+.+.+..+. .|+. ..+-....++.+.|+.+.|.+.+.+..+. .|+.. ..-.....+...|+++
T Consensus 95 ~~~g~~~~A~~~l~~~~~~--~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~--~p~~~l~~~~~~a~l~l~~~~~~ 170 (409)
T TIGR00540 95 LAEGDYAKAEKLIAKNADH--AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAEL--AGNDNILVEIARTRILLAQNELH 170 (409)
T ss_pred HhCCCHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCcCchHHHHHHHHHHHHCCCHH
Confidence 3579999999999887765 3443 33445567788899999999999998764 34443 3344578888999999
Q ss_pred HHHHHHHHHHhCCCCCcHhHHHHHHHHHHhcChhhHHHHHHHHHHhccCCCChhhHHHHHHHH---HhhcCh----hhHH
Q 044770 183 GLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILY---GYLAKG----KDLE 255 (464)
Q Consensus 183 ~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~~~~----~~a~ 255 (464)
.|...++.+.+.. +-+...+..+...+...|++++|.+.+..+.+.+..+.......-..++ ...+.. +...
T Consensus 171 ~Al~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~ 249 (409)
T TIGR00540 171 AARHGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLL 249 (409)
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHH
Confidence 9999999999875 2256678889999999999999999999999886543332211111111 222222 2333
Q ss_pred HHHHHhccCCCCchhhHHHHHHHhhccCChHHHHHHHHHHHhccccCChhh---HHHHHHHHHhcCChhHHHHHHHHHHh
Q 044770 256 RIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQ---YNSVISVYCKNGFIDKASGLLKEMSM 332 (464)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~---~~~li~~~~~~~~~~~a~~~~~~m~~ 332 (464)
+.++......+.+...+..+...+...|+.++|.+++++..+.. ||... ...........++.+.+.+.++...+
T Consensus 250 ~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~--pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk 327 (409)
T TIGR00540 250 NWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL--GDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAK 327 (409)
T ss_pred HHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC--CCcccchhHHHHHhhhcCCCChHHHHHHHHHHHH
Confidence 33443333333466778888889999999999999999988743 33221 12222222345677888888888776
Q ss_pred CCCCccH---HHHHHHHHHHHhcCChHHHHHHHHHhHHHHhhhhhcCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHH
Q 044770 333 NGCKPNA---ITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELK 408 (464)
Q Consensus 333 ~g~~p~~---~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 408 (464)
. .|+. ....++...+.+.|++++|.+.|+.+ ......|+...+..+...+.+.|+.++|.+++++..
T Consensus 328 ~--~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a-------~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l 397 (409)
T TIGR00540 328 N--VDDKPKCCINRALGQLLMKHGEFIEAADAFKNV-------AACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSL 397 (409)
T ss_pred h--CCCChhHHHHHHHHHHHHHcccHHHHHHHHHHh-------HHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4 3443 45557788888999999999999964 335667888888899999999999999999988754
No 41
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.63 E-value=4.1e-13 Score=115.51 Aligned_cols=386 Identities=12% Similarity=0.056 Sum_probs=259.6
Q ss_pred HHHHHhhcchHHHHHHHHHHHHcCCC-C--CCchhHHHHHHHHHhhcChHHHHHHhhhcCCCCCchhHHHHHHHHHHhhC
Q 044770 33 INRLRKLQLNKRALEVMEWVIRERPY-R--PKELDYSYLLEFTIKNHGISQGEKLFCCIPKDYQNELLYNNLVIACLDKG 109 (464)
Q Consensus 33 l~~~~~~~~~~~A~~~~~~~~~~~~~-~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~li~~~~~~~ 109 (464)
-..+.+.+.+..|+.+|+....+.+. . ......+.+.-.+.+.|+++.|+.-|+...+..|+..+--.|+-++..-|
T Consensus 244 gni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvtfiq~gqy~dainsfdh~m~~~pn~~a~~nl~i~~f~i~ 323 (840)
T KOG2003|consen 244 GNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTFIQAGQYDDAINSFDHCMEEAPNFIAALNLIICAFAIG 323 (840)
T ss_pred cceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeEEecccchhhHhhHHHHHHhCccHHhhhhhhhhheecC
Confidence 34556777889999999988764321 0 11234455556788899999999999998877788765555555555678
Q ss_pred cHHHHHHHHHHHHHcCCCCc------------hhhHHHHHH-----HhcCCCC--cccHHHHHHHHHhCCCCCChh----
Q 044770 110 VIKLSLEYMKKMRVLGHSIS------------YLVFNRLII-----LNSSPGR--RKTIPNILRQMKADKVAPHVS---- 166 (464)
Q Consensus 110 ~~~~a~~~~~~m~~~~~~~~------------~~~~~~l~~-----~~~~~~~--~~~a~~~~~~~~~~~~~~~~~---- 166 (464)
+.++..+.|.+|+.....|| ....+..+. -.-+.+. .++++-.-..++.--+.|+-.
T Consensus 324 d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~d 403 (840)
T KOG2003|consen 324 DAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCD 403 (840)
T ss_pred cHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccH
Confidence 89999999999986432332 222222221 1111111 111111111111111112110
Q ss_pred ---------hH--------HHHHHHHHccCChhHHHHHHHHHHhCCCCCcHhHHHHH--HH-------------------
Q 044770 167 ---------TF--------HILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCIL--AT------------------- 208 (464)
Q Consensus 167 ---------~~--------~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l--i~------------------- 208 (464)
.+ -.-..-+.+.|+++.|.+++.-+.+..-+.-...-+.| +.
T Consensus 404 wcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~al 483 (840)
T KOG2003|consen 404 WCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIAL 483 (840)
T ss_pred HHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHh
Confidence 00 01123577888888888888776543211111111100 00
Q ss_pred ---------------HHHhcChhhHHHHHHHHHHhccCCCChhhHHHHHHHHHhhcChhhHHHHHHHhccCCCCchhhHH
Q 044770 209 ---------------AHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSKSYV 273 (464)
Q Consensus 209 ---------------~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 273 (464)
.....|++++|.+.|++.+.....-....|+. .-.+-..|+.++|...|-.+......+..+..
T Consensus 484 n~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfni-glt~e~~~~ldeald~f~klh~il~nn~evl~ 562 (840)
T KOG2003|consen 484 NIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFNI-GLTAEALGNLDEALDCFLKLHAILLNNAEVLV 562 (840)
T ss_pred cccccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHHh-cccHHHhcCHHHHHHHHHHHHHHHHhhHHHHH
Confidence 01135889999999999877643333333333 33466789999999999888776666666777
Q ss_pred HHHHHhhccCChHHHHHHHHHHHhccccCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCccHHHHHHHHHHHHhcC
Q 044770 274 LAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSN 353 (464)
Q Consensus 274 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~ 353 (464)
.+...|-...+...|.+++.+... -++.|+...+.|...|-+.|+-..|.+.+-+--+- ++-+..|...|...|....
T Consensus 563 qianiye~led~aqaie~~~q~~s-lip~dp~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtq 640 (840)
T KOG2003|consen 563 QIANIYELLEDPAQAIELLMQANS-LIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQ 640 (840)
T ss_pred HHHHHHHHhhCHHHHHHHHHHhcc-cCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhH
Confidence 888899999999999999988776 46668899999999999999999999876554332 4457788888888889999
Q ss_pred ChHHHHHHHHHhHHHHhhhhhcCCCCcHHHHHHHHHHHH-hcCChhhHHHHHHHHHHcCCCCcHHHHHHHHHHHHHcCC
Q 044770 354 LVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFA-EKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKI 431 (464)
Q Consensus 354 ~~~~a~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~-~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~ 431 (464)
-+++++.+|+++ .-+.|+..-|..++..|. +.|+++.|.++++..... ++.|......|++-+...|-
T Consensus 641 f~ekai~y~eka---------aliqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrk-fpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 641 FSEKAINYFEKA---------ALIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRK-FPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred HHHHHHHHHHHH---------HhcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHh-CccchHHHHHHHHHhccccc
Confidence 999999999988 678999999998877665 689999999999998764 66788888999998888883
No 42
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.62 E-value=1e-11 Score=115.89 Aligned_cols=351 Identities=12% Similarity=0.082 Sum_probs=260.7
Q ss_pred HHHhhcChHHHHHHhhhcCCC-CCchhHHHHHHHHHHhhCcHHHHHHHHHHHHHcCCCCchhhHHHHHHHhcCCCCcccH
Q 044770 71 FTIKNHGISQGEKLFCCIPKD-YQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTI 149 (464)
Q Consensus 71 ~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a 149 (464)
.+...|++++|.+++.++... +.+...|-.|...|-..|+.+++...+-..-..+ +-|...|..+.....+.|+++.|
T Consensus 148 ~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~ladls~~~~~i~qA 226 (895)
T KOG2076|consen 148 NLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRLADLSEQLGNINQA 226 (895)
T ss_pred HHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHhcccHHHH
Confidence 344459999999999998887 5578899999999999999999998875554443 45678999999999999999999
Q ss_pred HHHHHHHHhCCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCcHhHHH----HHHHHHHhcChhhHHHHHHHH
Q 044770 150 PNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYC----ILATAHAVARLYTVAETYVEA 225 (464)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~----~li~~~~~~~~~~~a~~~~~~ 225 (464)
.-.|.+.++.. +++...+---...|-+.|+...|..-|.++.+...+.|..-+. .+++.+...++.+.|.+.++.
T Consensus 227 ~~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~ 305 (895)
T KOG2076|consen 227 RYCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEG 305 (895)
T ss_pred HHHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 99999999876 6666666667788999999999999999998874322322222 345567777888999998888
Q ss_pred HHhc-cCCCChhhHHHHHHHHHhhcChhhHHHHHHHhcc-CC----------------------CCchhhH----HHHHH
Q 044770 226 LEKS-MTGNNWSTLDVLIILYGYLAKGKDLERIWATVQE-LP----------------------NVRSKSY----VLAIE 277 (464)
Q Consensus 226 ~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~----------------------~~~~~~~----~~l~~ 277 (464)
.... +-..+...++.++..+.+...++.+......... .. .++..+| ..+.-
T Consensus 306 ~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~i 385 (895)
T KOG2076|consen 306 ALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMI 385 (895)
T ss_pred HHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhh
Confidence 7663 3344556778888888888888888776555443 00 0011111 12334
Q ss_pred HhhccCChHHHHHHHHHHHhccccC--ChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCccHHHHHHHHHHHHhcCCh
Q 044770 278 AFGRIAQVSRAEELWLEMQSVKQLK--ATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLV 355 (464)
Q Consensus 278 ~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~ 355 (464)
++......+....+.....+....| +...|.-+..+|...|++.+|+.+|..+...-..-+...|..+..+|...|.+
T Consensus 386 cL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~ 465 (895)
T KOG2076|consen 386 CLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEY 465 (895)
T ss_pred hhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhH
Confidence 4555555555666666666655333 56678889999999999999999999999865445677888999999999999
Q ss_pred HHHHHHHHHhHHHHhhhhhcCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHH--------HcCCCCcHHHHHHHHHHHH
Q 044770 356 EEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELK--------KANYTKYTFVYNTLIKAYV 427 (464)
Q Consensus 356 ~~a~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~--------~~~~~p~~~~~~~li~~~~ 427 (464)
++|.+.++.++.. .....|.. ..|...+.+.|+.++|.++++.+. ..+..|+...--.....+.
T Consensus 466 e~A~e~y~kvl~~------~p~~~D~R--i~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~ 537 (895)
T KOG2076|consen 466 EEAIEFYEKVLIL------APDNLDAR--ITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILF 537 (895)
T ss_pred HHHHHHHHHHHhc------CCCchhhh--hhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHH
Confidence 9999999999632 22233333 378888999999999999999854 3344555665556666777
Q ss_pred HcCC
Q 044770 428 KAKI 431 (464)
Q Consensus 428 ~~g~ 431 (464)
+.|+
T Consensus 538 ~~gk 541 (895)
T KOG2076|consen 538 QVGK 541 (895)
T ss_pred Hhhh
Confidence 7775
No 43
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.59 E-value=8.1e-11 Score=102.52 Aligned_cols=375 Identities=13% Similarity=-0.004 Sum_probs=237.7
Q ss_pred HHHHHHHhhcchHHHHHHHHHHHHcCCCCCC-chhHHHHHHHHHhhcChHHHHHHhhhcCCCCCc-hhHHHHHHHHHHhh
Q 044770 31 HSINRLRKLQLNKRALEVMEWVIRERPYRPK-ELDYSYLLEFTIKNHGISQGEKLFCCIPKDYQN-ELLYNNLVIACLDK 108 (464)
Q Consensus 31 ~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~li~~~~~~ 108 (464)
..-..+.++|.+++|++.|.+.+. ..|+ +.-|+....+|...|+++++.+--....+..|+ +.++..-.+++-..
T Consensus 120 ~~GN~~f~~kkY~eAIkyY~~AI~---l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~Y~KAl~RRA~A~E~l 196 (606)
T KOG0547|consen 120 TKGNKFFRNKKYDEAIKYYTQAIE---LCPDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPDYVKALLRRASAHEQL 196 (606)
T ss_pred hhhhhhhhcccHHHHHHHHHHHHh---cCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHhh
Confidence 344567789999999999999998 4577 788999999999999999988877776665443 45566666666666
Q ss_pred CcHHHHHHHH----------------------HHH--------HH-cC--CCCchhhHHHHHHHhcC--------CCC--
Q 044770 109 GVIKLSLEYM----------------------KKM--------RV-LG--HSISYLVFNRLIILNSS--------PGR-- 145 (464)
Q Consensus 109 ~~~~~a~~~~----------------------~~m--------~~-~~--~~~~~~~~~~l~~~~~~--------~~~-- 145 (464)
|++++|+.-. .+. .+ .+ +-|+.....+..+.+.. .++
T Consensus 197 g~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~~~~ks 276 (606)
T KOG0547|consen 197 GKFDEALFDVTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFDNKSDKS 276 (606)
T ss_pred ccHHHHHHhhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccccccCCCccc
Confidence 6666654311 110 01 01 22333333333332221 000
Q ss_pred ---cccHHHHHHHHHhCCC----------------CCCh-----------hhHHHHHHHHHccCChhHHHHHHHHHHhCC
Q 044770 146 ---RKTIPNILRQMKADKV----------------APHV-----------STFHILMKIEANDHNIEGLMKVYSDMKRSE 195 (464)
Q Consensus 146 ---~~~a~~~~~~~~~~~~----------------~~~~-----------~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~ 195 (464)
..++.+.+..-...|. .++. .+...-...+.-.|+.-.|..-|+......
T Consensus 277 Da~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~ 356 (606)
T KOG0547|consen 277 DAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAAIKLD 356 (606)
T ss_pred hhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHHHhcC
Confidence 0111111111100010 1111 111111122334677788888888887764
Q ss_pred CCCcHhHHHHHHHHHHhcChhhHHHHHHHHHHhccCCCChhhHHHHHHHHHhhcChhhHHHHHHHhccCCCCchhhHHHH
Q 044770 196 VEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSKSYVLA 275 (464)
Q Consensus 196 ~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l 275 (464)
..++. .|--+...|....+.++....|.+..+.+ +-++.+|..-.+...-.++++.|..=|+......+.+...|..+
T Consensus 357 ~~~~~-lyI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe~~~~~iQl 434 (606)
T KOG0547|consen 357 PAFNS-LYIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPENAYAYIQL 434 (606)
T ss_pred cccch-HHHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChhhhHHHHHH
Confidence 33222 26666667888888888888888887753 34667777777777778888888888888888777777777777
Q ss_pred HHHhhccCChHHHHHHHHHHHhccccCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcc-------HHHHH--HHH
Q 044770 276 IEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPN-------AITYR--HLA 346 (464)
Q Consensus 276 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-------~~~~~--~ll 346 (464)
..+..+.+++++++..|++..+ .++-.+..|+.....+...++++.|.+.|+..++. .|+ ..++. .++
T Consensus 435 ~~a~Yr~~k~~~~m~~Fee~kk-kFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~L--E~~~~~~~v~~~plV~Ka~l 511 (606)
T KOG0547|consen 435 CCALYRQHKIAESMKTFEEAKK-KFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIEL--EPREHLIIVNAAPLVHKALL 511 (606)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-hCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhh--ccccccccccchhhhhhhHh
Confidence 7777888888888888888887 55566778888888888888888888888887762 332 22211 111
Q ss_pred HHHHhcCChHHHHHHHHHhHHHHhhhhhcCCCC-cHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCcHHHHHHHHHH
Q 044770 347 LGCFKSNLVEEGFKALELGMKLITTKKVRSSTP-WLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKA 425 (464)
Q Consensus 347 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~ 425 (464)
.. --.+++..|.+++.++ ..+.| ....|..|...-...|+.++|+++|++.... ..|-.-++.+
T Consensus 512 ~~-qwk~d~~~a~~Ll~KA---------~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~l-----Art~~E~~~a 576 (606)
T KOG0547|consen 512 VL-QWKEDINQAENLLRKA---------IELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQL-----ARTESEMVHA 576 (606)
T ss_pred hh-chhhhHHHHHHHHHHH---------HccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH-----HHhHHHHHHH
Confidence 11 1237788888888887 34455 3345778888888888888888888876642 2344445555
Q ss_pred HHH
Q 044770 426 YVK 428 (464)
Q Consensus 426 ~~~ 428 (464)
|.-
T Consensus 577 ~s~ 579 (606)
T KOG0547|consen 577 YSL 579 (606)
T ss_pred HHH
Confidence 443
No 44
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.58 E-value=3.7e-13 Score=121.28 Aligned_cols=287 Identities=12% Similarity=0.018 Sum_probs=226.2
Q ss_pred hhcchHHHHHHHHHHHHcCCCCCCchhHHHHHHHHHhhcChHHHHHHhhhcCCCCC----chhHHHHHHHHHHhhCcHHH
Q 044770 38 KLQLNKRALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQGEKLFCCIPKDYQ----NELLYNNLVIACLDKGVIKL 113 (464)
Q Consensus 38 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~----~~~~~~~li~~~~~~~~~~~ 113 (464)
..-+.++|+..|...... +..+..+...+..+|...+++++|+++|+.+....| +...|.+.+--+-+ +-
T Consensus 331 s~y~~~~A~~~~~klp~h--~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~----~v 404 (638)
T KOG1126|consen 331 SQYNCREALNLFEKLPSH--HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD----EV 404 (638)
T ss_pred HHHHHHHHHHHHHhhHHh--cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh----hH
Confidence 345678999999996552 344557788899999999999999999999887744 56778777654322 22
Q ss_pred HHHHH-HHHHHcCCCCchhhHHHHHHHhcCCCCcccHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhHHHHHHHHHH
Q 044770 114 SLEYM-KKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMK 192 (464)
Q Consensus 114 a~~~~-~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~ 192 (464)
++..+ +.+... -+-.+.+|.++.++|.-.++.+.|++.|++..+.. +....+|+.+.+-+.....+|.|...|+...
T Consensus 405 ~Ls~Laq~Li~~-~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQld-p~faYayTLlGhE~~~~ee~d~a~~~fr~Al 482 (638)
T KOG1126|consen 405 ALSYLAQDLIDT-DPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLD-PRFAYAYTLLGHESIATEEFDKAMKSFRKAL 482 (638)
T ss_pred HHHHHHHHHHhh-CCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccC-CccchhhhhcCChhhhhHHHHhHHHHHHhhh
Confidence 23333 333443 24467899999999999999999999999998864 4478899999999999999999999999887
Q ss_pred hCCCCCcHhHHHH---HHHHHHhcChhhHHHHHHHHHHhccCCCChhhHHHHHHHHHhhcChhhHHHHHHHhccCCCCch
Q 044770 193 RSEVEPNEVSYCI---LATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRS 269 (464)
Q Consensus 193 ~~~~~p~~~~~~~---li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 269 (464)
..|...|++ +.-.|.+.++++.|+-.|++..+.+ +.+......+...+.+.|+.++|++++++.....+.++
T Consensus 483 ----~~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~IN-P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~ 557 (638)
T KOG1126|consen 483 ----GVDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEIN-PSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNP 557 (638)
T ss_pred ----cCCchhhHHHHhhhhheeccchhhHHHHHHHhhhcCC-ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCc
Confidence 445555554 5566899999999999999988753 23556667778888999999999999999988777776
Q ss_pred hhHHHHHHHhhccCChHHHHHHHHHHHhccccCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcc
Q 044770 270 KSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPN 338 (464)
Q Consensus 270 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~ 338 (464)
..--.-+..+...+++++|+..++++.+ -.+.+...|..+...|.+.|+.+.|+.-|.-+.+...++.
T Consensus 558 l~~~~~~~il~~~~~~~eal~~LEeLk~-~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg~ 625 (638)
T KOG1126|consen 558 LCKYHRASILFSLGRYVEALQELEELKE-LVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKGA 625 (638)
T ss_pred hhHHHHHHHHHhhcchHHHHHHHHHHHH-hCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCccc
Confidence 6666667778889999999999999998 4555777889999999999999999999998888544433
No 45
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.58 E-value=1.1e-10 Score=101.30 Aligned_cols=382 Identities=9% Similarity=-0.008 Sum_probs=221.9
Q ss_pred ChhchHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCC-chhHHHHHHHHHhhcChHHHHHHhhhcCCCCCchhHHHHHHH
Q 044770 25 HRGEIFHSINRLRKLQLNKRALEVMEWVIRERPYRPK-ELDYSYLLEFTIKNHGISQGEKLFCCIPKDYQNELLYNNLVI 103 (464)
Q Consensus 25 ~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~li~ 103 (464)
+...+...+..=.++..+..|..+++..+... |. ...|-..+.+=-..|++..|.++|++-..-.|+..+|++.|.
T Consensus 106 ~itLWlkYae~Emknk~vNhARNv~dRAvt~l---PRVdqlWyKY~ymEE~LgNi~gaRqiferW~~w~P~eqaW~sfI~ 182 (677)
T KOG1915|consen 106 NITLWLKYAEFEMKNKQVNHARNVWDRAVTIL---PRVDQLWYKYIYMEEMLGNIAGARQIFERWMEWEPDEQAWLSFIK 182 (677)
T ss_pred cchHHHHHHHHHHhhhhHhHHHHHHHHHHHhc---chHHHHHHHHHHHHHHhcccHHHHHHHHHHHcCCCcHHHHHHHHH
Confidence 33444445555556666666666666665522 22 223333444444556666666666665555566666666666
Q ss_pred HHHhhCcHHHHHHHHHHHHHcCCCCchhhHHHHHHHhcCCCCcccHHHHHHHHHhC-CC-CCChhhHHHHHHHHHccCCh
Q 044770 104 ACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKAD-KV-APHVSTFHILMKIEANDHNI 181 (464)
Q Consensus 104 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~-~~~~~~~~~l~~~~~~~~~~ 181 (464)
.-.+-..++.|..+++...- +.|++.+|-...+.-.+.|++..+..+|+...+. |- ..+...+.+....-.++..+
T Consensus 183 fElRykeieraR~IYerfV~--~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ 260 (677)
T KOG1915|consen 183 FELRYKEIERARSIYERFVL--VHPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEY 260 (677)
T ss_pred HHHHhhHHHHHHHHHHHHhe--ecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666666666666654 3466666666666666666666666666655442 10 11122233333322333344
Q ss_pred hHHHHHHHHHHh--------------------------------------------CCCCCcHhHHHHHHHHHHhcChhh
Q 044770 182 EGLMKVYSDMKR--------------------------------------------SEVEPNEVSYCILATAHAVARLYT 217 (464)
Q Consensus 182 ~~a~~~~~~m~~--------------------------------------------~~~~p~~~~~~~li~~~~~~~~~~ 217 (464)
+.|.-+|+-... .+ +-|-.+|-..+..-...|+.+
T Consensus 261 ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~n-p~nYDsWfdylrL~e~~g~~~ 339 (677)
T KOG1915|consen 261 ERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKN-PYNYDSWFDYLRLEESVGDKD 339 (677)
T ss_pred HHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhC-CCCchHHHHHHHHHHhcCCHH
Confidence 444443333322 21 234455555555555567777
Q ss_pred HHHHHHHHHHhccCCCCh-------hhHHHHHHHH---HhhcChhhHHHHHHHhccCCCCchhhHHHHHHHh----hccC
Q 044770 218 VAETYVEALEKSMTGNNW-------STLDVLIILY---GYLAKGKDLERIWATVQELPNVRSKSYVLAIEAF----GRIA 283 (464)
Q Consensus 218 ~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~---~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~----~~~g 283 (464)
...++|++.... ++|-. ..|.-+--++ ....+.+.+.++++...+..+-...||.-+--.| .++.
T Consensus 340 ~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~lIPHkkFtFaKiWlmyA~feIRq~ 418 (677)
T KOG1915|consen 340 RIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDLIPHKKFTFAKIWLMYAQFEIRQL 418 (677)
T ss_pred HHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHc
Confidence 777777776655 33321 1111111111 2345666667777766665555555555443333 3567
Q ss_pred ChHHHHHHHHHHHhccccCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCccHHHHHHHHHHHHhcCChHHHHHHHH
Q 044770 284 QVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALE 363 (464)
Q Consensus 284 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 363 (464)
++..|.+++.... |..|-..+|...|..-.+.++++.+..+|...++.+.. |..+|......=...|+.+.|..+|+
T Consensus 419 ~l~~ARkiLG~AI--G~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~Pe-~c~~W~kyaElE~~LgdtdRaRaife 495 (677)
T KOG1915|consen 419 NLTGARKILGNAI--GKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFSPE-NCYAWSKYAELETSLGDTDRARAIFE 495 (677)
T ss_pred ccHHHHHHHHHHh--ccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcChH-hhHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 7777777777666 44566667777777777888888888888888885322 55667666666667788888888888
Q ss_pred HhHHHHhhhhhcCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCcHHHHHHHHH
Q 044770 364 LGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIK 424 (464)
Q Consensus 364 ~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~ 424 (464)
.++ ...........|-+.|+.-...|.++.|..+++++.+.. +...+|-.+..
T Consensus 496 lAi------~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt--~h~kvWisFA~ 548 (677)
T KOG1915|consen 496 LAI------SQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRT--QHVKVWISFAK 548 (677)
T ss_pred HHh------cCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhc--ccchHHHhHHH
Confidence 885 223334445556677777778888999999988888753 44456655443
No 46
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.57 E-value=1.5e-11 Score=101.37 Aligned_cols=286 Identities=14% Similarity=0.089 Sum_probs=216.4
Q ss_pred CCCCcccHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCcH------hHHHHHHHHHHhcCh
Q 044770 142 SPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNE------VSYCILATAHAVARL 215 (464)
Q Consensus 142 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~------~~~~~li~~~~~~~~ 215 (464)
-+++.++|.++|-+|.+.. +.+..+.-+|.+.|.+.|..|.|+.+.+.+.++ ||. .....|..-|...|-
T Consensus 47 Ls~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s---pdlT~~qr~lAl~qL~~Dym~aGl 122 (389)
T COG2956 47 LSNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES---PDLTFEQRLLALQQLGRDYMAAGL 122 (389)
T ss_pred hhcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC---CCCchHHHHHHHHHHHHHHHHhhh
Confidence 3567999999999999854 445556678999999999999999999999874 442 234456677889999
Q ss_pred hhHHHHHHHHHHhccCCCChhhHHHHHHHHHhhcChhhHHHHHHHhccCCCCc-----hhhHHHHHHHhhccCChHHHHH
Q 044770 216 YTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVR-----SKSYVLAIEAFGRIAQVSRAEE 290 (464)
Q Consensus 216 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~a~~ 290 (464)
++.|+.+|..+.+.+. --......|+..|....+|++|+++-+.+.+..+.+ ..-|.-|...+....+++.|..
T Consensus 123 ~DRAE~~f~~L~de~e-fa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~ 201 (389)
T COG2956 123 LDRAEDIFNQLVDEGE-FAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARE 201 (389)
T ss_pred hhHHHHHHHHHhcchh-hhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHH
Confidence 9999999999887532 234567789999999999999999988777632222 2246667777778899999999
Q ss_pred HHHHHHhccccCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCccHHHHHHHHHHHHhcCChHHHHHHHHHhHHHHh
Q 044770 291 LWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLIT 370 (464)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 370 (464)
++.+..+.+ +..+..--.+...+...|+++.|.+.++...+++..--+.+...+..+|...|+.++...++..++
T Consensus 202 ~l~kAlqa~-~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~---- 276 (389)
T COG2956 202 LLKKALQAD-KKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAM---- 276 (389)
T ss_pred HHHHHHhhC-ccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH----
Confidence 999998844 234445555677888999999999999999998766566788899999999999999999999984
Q ss_pred hhhhcCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCcHHHHHHHHHHHHHcCCC-----hhHHHHHHHhCC
Q 044770 371 TKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKIN-----DPNLLRRMILGG 444 (464)
Q Consensus 371 ~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~-----a~~~~~~m~~~~ 444 (464)
.....++.. ..+...-....-.+.|...+.+-..+ +|+...+..+|..-....++ .+.+++.|....
T Consensus 277 ---~~~~g~~~~--l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvge~ 348 (389)
T COG2956 277 ---ETNTGADAE--LMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVGEQ 348 (389)
T ss_pred ---HccCCccHH--HHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhhhccccccchhhhHHHHHHHHHHH
Confidence 233333332 34444444455566777766555544 49999999999988877654 356777777653
No 47
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.55 E-value=6.1e-11 Score=100.90 Aligned_cols=284 Identities=13% Similarity=0.013 Sum_probs=224.4
Q ss_pred hcChHHHHHHhhhcCCC-CCchhHHHHHHHHHHhhCcHHHHHHHHHHHHHcCCCCchhhHHHHHHHhcCCCCcccHHHHH
Q 044770 75 NHGISQGEKLFCCIPKD-YQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNIL 153 (464)
Q Consensus 75 ~g~~~~a~~~~~~~~~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 153 (464)
.|++..|++...+-.+. ......|..-+.+.-..|+.+.+-..+.+..+..-.++...+-+..+.....|+.+.|..-+
T Consensus 97 eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v 176 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENV 176 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHH
Confidence 58999999999887666 33556777778888889999999999999988633556667777778889999999999999
Q ss_pred HHHHhCCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCcH-------hHHHHHHHHHHhcChhhHHHHHHHHH
Q 044770 154 RQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNE-------VSYCILATAHAVARLYTVAETYVEAL 226 (464)
Q Consensus 154 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~-------~~~~~li~~~~~~~~~~~a~~~~~~~ 226 (464)
+++.+.+ +.+.........+|.+.|++.....++..|.+.|.--|. .+|+.+++-....+..+.-...++..
T Consensus 177 ~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~ 255 (400)
T COG3071 177 DQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQ 255 (400)
T ss_pred HHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhc
Confidence 9998876 677788889999999999999999999999998855443 45677777666666666666667666
Q ss_pred HhccCCCChhhHHHHHHHHHhhcChhhHHHHHHHhccCCCCchhhHHHHHHHhhccCChHHHHHHHHHHHhccccCChhh
Q 044770 227 EKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQ 306 (464)
Q Consensus 227 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 306 (464)
... .+.++.....++.-+...|+.++|.++.....+...... -...-.+.+-++.+.-.+..+.-.+. .+-++..
T Consensus 256 pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~---L~~~~~~l~~~d~~~l~k~~e~~l~~-h~~~p~L 330 (400)
T COG3071 256 PRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR---LCRLIPRLRPGDPEPLIKAAEKWLKQ-HPEDPLL 330 (400)
T ss_pred cHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh---HHHHHhhcCCCCchHHHHHHHHHHHh-CCCChhH
Confidence 444 555667777888889999999999998887766433333 22333455667777777777665542 2234568
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCccHHHHHHHHHHHHhcCChHHHHHHHHHhH
Q 044770 307 YNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGM 366 (464)
Q Consensus 307 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 366 (464)
+.++...|.+++.|.+|...|+...+ ..|+..+|+.+..++.+.|+.++|.++.++.+
T Consensus 331 ~~tLG~L~~k~~~w~kA~~~leaAl~--~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L 388 (400)
T COG3071 331 LSTLGRLALKNKLWGKASEALEAALK--LRPSASDYAELADALDQLGEPEEAEQVRREAL 388 (400)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHh--cCCChhhHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 89999999999999999999998877 67999999999999999999999999999885
No 48
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.55 E-value=7.9e-10 Score=96.16 Aligned_cols=386 Identities=13% Similarity=0.065 Sum_probs=240.9
Q ss_pred hhcchHHHHHHHHHHHHcCCCCCCchhHHHHHHHHHhhcChHHHHHHhhhcCCCCCch-hHHHHHHHHHHhhCcHHHHHH
Q 044770 38 KLQLNKRALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQGEKLFCCIPKDYQNE-LLYNNLVIACLDKGVIKLSLE 116 (464)
Q Consensus 38 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~li~~~~~~~~~~~a~~ 116 (464)
.++++..|..+|+.+.... ..+...|-..+.+=.++..+..|..++++.....|.+ ..|-..+..--..|++..|.+
T Consensus 85 sq~e~~RARSv~ERALdvd--~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE~LgNi~gaRq 162 (677)
T KOG1915|consen 85 SQKEIQRARSVFERALDVD--YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYMEEMLGNIAGARQ 162 (677)
T ss_pred hHHHHHHHHHHHHHHHhcc--cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHHHHhcccHHHHH
Confidence 4555677888888887622 3456677777888888999999999999987774543 456666666667899999999
Q ss_pred HHHHHHHcCCCCchhhHHHHHHHhcCCCCcccHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhCCC
Q 044770 117 YMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEV 196 (464)
Q Consensus 117 ~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~ 196 (464)
+|+.-.+ ..|+...|.+.++.-.+...++.|..+++...- +.|++.+|--....-.+.|+...|..+|+...+.
T Consensus 163 iferW~~--w~P~eqaW~sfI~fElRykeieraR~IYerfV~--~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~-- 236 (677)
T KOG1915|consen 163 IFERWME--WEPDEQAWLSFIKFELRYKEIERARSIYERFVL--VHPKVSNWIKYARFEEKHGNVALARSVYERAIEF-- 236 (677)
T ss_pred HHHHHHc--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhe--ecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH--
Confidence 9998887 579999999999999999999999999999875 3699999998888888999999999999887653
Q ss_pred CCcHhHHHHHHHHH----HhcChhhHHHHHHHHHHhccCC----------------------------------------
Q 044770 197 EPNEVSYCILATAH----AVARLYTVAETYVEALEKSMTG---------------------------------------- 232 (464)
Q Consensus 197 ~p~~~~~~~li~~~----~~~~~~~~a~~~~~~~~~~~~~---------------------------------------- 232 (464)
-.|...-..+..++ .++..++.|.-+|+-.+++-.+
T Consensus 237 ~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~ 316 (677)
T KOG1915|consen 237 LGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVS 316 (677)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHH
Confidence 11222223333333 3455666666666655543111
Q ss_pred ---CChhhHHHHHHHHHhhcChhhHHHHHHHhccCCCCchh--hHHHHHH--------HhhccCChHHHHHHHHHHHhcc
Q 044770 233 ---NNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSK--SYVLAIE--------AFGRIAQVSRAEELWLEMQSVK 299 (464)
Q Consensus 233 ---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~l~~--------~~~~~g~~~~a~~~~~~~~~~~ 299 (464)
.|-.+|-..++.....|+.+...++++....+.+|-.. -|...|- .=....+++.+.++|+...+ -
T Consensus 317 ~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~-l 395 (677)
T KOG1915|consen 317 KNPYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLD-L 395 (677)
T ss_pred hCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh-h
Confidence 12223333333344444445555555544443333111 1111110 00123444555555555544 2
Q ss_pred ccCChhhHHHHHHHH----HhcCChhHHHHHHHHHHhCCCCccHHHHHHHHHHHHhcCChHHHHHHHHHhHHHHhhhhhc
Q 044770 300 QLKATEQYNSVISVY----CKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVR 375 (464)
Q Consensus 300 ~~~~~~~~~~li~~~----~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 375 (464)
++...+||..+=-.| .++.++..|.+++...+ |..|-..+|...|..=.+.+.++.+..+++..+
T Consensus 396 IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI--G~cPK~KlFk~YIelElqL~efDRcRkLYEkfl--------- 464 (677)
T KOG1915|consen 396 IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI--GKCPKDKLFKGYIELELQLREFDRCRKLYEKFL--------- 464 (677)
T ss_pred cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh--ccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHH---------
Confidence 333334444333222 24455666666666544 356666677666666666777777777777663
Q ss_pred CCCC-cHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCC-CCcHHHHHHHHHHHHHcCCC--hhHHHHHHHhC
Q 044770 376 SSTP-WLETTLSIIEIFAEKGDVGNAENLFEELKKANY-TKYTFVYNTLIKAYVKAKIN--DPNLLRRMILG 443 (464)
Q Consensus 376 ~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~p~~~~~~~li~~~~~~g~~--a~~~~~~m~~~ 443 (464)
...| +..+|......-...|+.+.|..+|+-..+++. ......|-+.|.-=...|+. |-.+++++.+.
T Consensus 465 e~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~r 536 (677)
T KOG1915|consen 465 EFSPENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDR 536 (677)
T ss_pred hcChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHh
Confidence 3444 455566666666667888888888877776532 11122555555555555543 66777777654
No 49
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.55 E-value=2e-12 Score=116.67 Aligned_cols=283 Identities=11% Similarity=0.044 Sum_probs=224.4
Q ss_pred ChHHHHHHhhhcCCCCCch-hHHHHHHHHHHhhCcHHHHHHHHHHHHHcCC--CCchhhHHHHHHHhcCCCCcccHHHHH
Q 044770 77 GISQGEKLFCCIPKDYQNE-LLYNNLVIACLDKGVIKLSLEYMKKMRVLGH--SISYLVFNRLIILNSSPGRRKTIPNIL 153 (464)
Q Consensus 77 ~~~~a~~~~~~~~~~~~~~-~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~ 153 (464)
+..+|...|+.++...++. .....+..+|...+++++|.++|+.+.+... .-+.+.|.+.+.-+-+ +-++..+
T Consensus 334 ~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~----~v~Ls~L 409 (638)
T KOG1126|consen 334 NCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD----EVALSYL 409 (638)
T ss_pred HHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh----hHHHHHH
Confidence 5678999999977775544 5556788999999999999999999987431 2357788887754432 1222222
Q ss_pred -HHHHhCCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCC-cHhHHHHHHHHHHhcChhhHHHHHHHHHHhccC
Q 044770 154 -RQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEP-NEVSYCILATAHAVARLYTVAETYVEALEKSMT 231 (464)
Q Consensus 154 -~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~ 231 (464)
+.+.+.. +-...+|-++.++|.-+++.+.|++.|++..+. .| ...+|+.+..-+.....+|.|...|+..+...
T Consensus 410 aq~Li~~~-~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQl--dp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~- 485 (638)
T KOG1126|consen 410 AQDLIDTD-PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQL--DPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVD- 485 (638)
T ss_pred HHHHHhhC-CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhcc--CCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCC-
Confidence 3333332 556779999999999999999999999999875 45 67888888888999999999999999886531
Q ss_pred CCChhhHHHHHHHHHhhcChhhHHHHHHHhccCCCCchhhHHHHHHHhhccCChHHHHHHHHHHHhccccCChhhHHHHH
Q 044770 232 GNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVI 311 (464)
Q Consensus 232 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li 311 (464)
+.+-..|--+...|.+.++++.|+-.|+...+..+.+......+...+-+.|+.++|++++++..... +.|+..--..+
T Consensus 486 ~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld-~kn~l~~~~~~ 564 (638)
T KOG1126|consen 486 PRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLD-PKNPLCKYHRA 564 (638)
T ss_pred chhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcC-CCCchhHHHHH
Confidence 12233455567889999999999999999999888888888899999999999999999999998743 34666666677
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCCCccH-HHHHHHHHHHHhcCChHHHHHHHHHhHHHHh
Q 044770 312 SVYCKNGFIDKASGLLKEMSMNGCKPNA-ITYRHLALGCFKSNLVEEGFKALELGMKLIT 370 (464)
Q Consensus 312 ~~~~~~~~~~~a~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 370 (464)
..+...+++++|+..++++++ +.|+. ..|..+...|-+.|+.+.|+.-|..|.++..
T Consensus 565 ~il~~~~~~~eal~~LEeLk~--~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldp 622 (638)
T KOG1126|consen 565 SILFSLGRYVEALQELEELKE--LVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDP 622 (638)
T ss_pred HHHHhhcchHHHHHHHHHHHH--hCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCC
Confidence 788889999999999999998 66765 5566777889999999999999998877644
No 50
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.54 E-value=9.6e-10 Score=95.40 Aligned_cols=349 Identities=11% Similarity=0.036 Sum_probs=238.1
Q ss_pred CchhHHHHHHHHHhhcChHHHHHHhhhcCCCCC-chhHHHHHHHHHHhhCcHHHHHHHHHHHHHcCCCCchhhHH--HHH
Q 044770 61 KELDYSYLLEFTIKNHGISQGEKLFCCIPKDYQ-NELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFN--RLI 137 (464)
Q Consensus 61 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~--~l~ 137 (464)
|...+-...-.+.+.|..+.|.+.|.......| .=.+|..|.... .+. ++...... |.+.|...+. .+.
T Consensus 163 D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~li---t~~----e~~~~l~~-~l~~~~h~M~~~F~~ 234 (559)
T KOG1155|consen 163 DEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELI---TDI----EILSILVV-GLPSDMHWMKKFFLK 234 (559)
T ss_pred hhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhh---chH----HHHHHHHh-cCcccchHHHHHHHH
Confidence 433334444455566777777777776655322 223333333222 111 22222222 1222211111 123
Q ss_pred HHhcCCCCcccHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhCCC--CCcHhHHHHHHHHHHhcCh
Q 044770 138 ILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEV--EPNEVSYCILATAHAVARL 215 (464)
Q Consensus 138 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~--~p~~~~~~~li~~~~~~~~ 215 (464)
.++-...+.+++..-.+.....|++-+...-+....+.-...++|+|+.+|+++.+... --|..+|+.++-. +..+
T Consensus 235 ~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv--~~~~ 312 (559)
T KOG1155|consen 235 KAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYV--KNDK 312 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHH--Hhhh
Confidence 34445556778888888888888766666555556667778999999999999987731 1266788777644 3222
Q ss_pred hhHHHHHHHHHHhccCCCChhhHHHHHHHHHhhcChhhHHHHHHHhccCCCCchhhHHHHHHHhhccCChHHHHHHHHHH
Q 044770 216 YTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEM 295 (464)
Q Consensus 216 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 295 (464)
.. +.++-+-...-.+--+.|...+.+.|+-.++.+.|...|++..+..+.....|+.+..-|....+...|.+.++..
T Consensus 313 sk--Ls~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrA 390 (559)
T KOG1155|consen 313 SK--LSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRA 390 (559)
T ss_pred HH--HHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHH
Confidence 21 2222222111123345678888999999999999999999999988888889999999999999999999999999
Q ss_pred HhccccCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCc-cHHHHHHHHHHHHhcCChHHHHHHHHHhHHHHhhhhh
Q 044770 296 QSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKP-NAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKV 374 (464)
Q Consensus 296 ~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 374 (464)
.+ -.+.|-..|-.+..+|.-.+-..-|+-.|++... ++| |...|..|..+|.+.++.++|+..|..++.
T Consensus 391 vd-i~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~--~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~------- 460 (559)
T KOG1155|consen 391 VD-INPRDYRAWYGLGQAYEIMKMHFYALYYFQKALE--LKPNDSRLWVALGECYEKLNRLEEAIKCYKRAIL------- 460 (559)
T ss_pred Hh-cCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHh--cCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHh-------
Confidence 98 3455888999999999999999999999999988 455 678999999999999999999999999852
Q ss_pred cCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHHHc----C-CCCcHH-HHHHHHHHHHHcCCC
Q 044770 375 RSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKA----N-YTKYTF-VYNTLIKAYVKAKIN 432 (464)
Q Consensus 375 ~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~-~~p~~~-~~~~li~~~~~~g~~ 432 (464)
.+ ..+...+..|.+.|-+.++.++|...|+...+. | +.|..+ .---|..-+.+.++.
T Consensus 461 ~~-dte~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~ 523 (559)
T KOG1155|consen 461 LG-DTEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDF 523 (559)
T ss_pred cc-ccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcch
Confidence 22 225567889999999999999999998877652 3 333233 222244555555653
No 51
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.53 E-value=1.4e-09 Score=98.29 Aligned_cols=378 Identities=11% Similarity=0.031 Sum_probs=305.6
Q ss_pred cchhhHHHHhhcCcc--ChhchHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCCchhHHHHHHHHHhhcChHHHHHHhhh
Q 044770 10 VGSAFQSWMREGFPV--HRGEIFHSINRLRKLQLNKRALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQGEKLFCC 87 (464)
Q Consensus 10 ~~~~l~~~~~~g~~~--~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 87 (464)
+..++.....-|+.- -.+++..-...|.+.+.++-|..+|...++- ++.+...|......=-..|..++...+|++
T Consensus 498 cQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqv--fp~k~slWlra~~~ek~hgt~Esl~Allqk 575 (913)
T KOG0495|consen 498 CQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQV--FPCKKSLWLRAAMFEKSHGTRESLEALLQK 575 (913)
T ss_pred HHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhh--ccchhHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 344455544445432 2356777888899999999999999999884 355677788877777788999999999999
Q ss_pred cCCCCC-chhHHHHHHHHHHhhCcHHHHHHHHHHHHHcCCCCchhhHHHHHHHhcCCCCcccHHHHHHHHHhCCCCCChh
Q 044770 88 IPKDYQ-NELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVS 166 (464)
Q Consensus 88 ~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 166 (464)
.....| ....|-.....+-..|+...|..++....+.. +-+...|-+.+.......+++.|..+|.+.... .|+..
T Consensus 576 av~~~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~-pnseeiwlaavKle~en~e~eraR~llakar~~--sgTeR 652 (913)
T KOG0495|consen 576 AVEQCPKAEILWLMYAKEKWKAGDVPAARVILDQAFEAN-PNSEEIWLAAVKLEFENDELERARDLLAKARSI--SGTER 652 (913)
T ss_pred HHHhCCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhC-CCcHHHHHHHHHHhhccccHHHHHHHHHHHhcc--CCcch
Confidence 888744 56678888888889999999999999999864 347888999999999999999999999998764 67777
Q ss_pred hHHHHHHHHHccCChhHHHHHHHHHHhCCCCCc-HhHHHHHHHHHHhcChhhHHHHHHHHHHhccCCCChhhHHHHHHHH
Q 044770 167 TFHILMKIEANDHNIEGLMKVYSDMKRSEVEPN-EVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILY 245 (464)
Q Consensus 167 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 245 (464)
+|..-++...-.++.++|.+++++..+. -|+ ...|-.+.+.+-+.++.+.|...|..-.+. ++..+..|..+...-
T Consensus 653 v~mKs~~~er~ld~~eeA~rllEe~lk~--fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP~~ipLWllLakle 729 (913)
T KOG0495|consen 653 VWMKSANLERYLDNVEEALRLLEEALKS--FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK-CPNSIPLWLLLAKLE 729 (913)
T ss_pred hhHHHhHHHHHhhhHHHHHHHHHHHHHh--CCchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-CCCCchHHHHHHHHH
Confidence 8877777777789999999999998875 555 345667777788889999998888766554 555667788888888
Q ss_pred HhhcChhhHHHHHHHhccCCCCchhhHHHHHHHhhccCChHHHHHHHHHHHhccccCChhhHHHHHHHHHhcCChhHHHH
Q 044770 246 GYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASG 325 (464)
Q Consensus 246 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~ 325 (464)
-+.|..-.|..+++......+.+...|...|+.=.+.|+.+.|..+..+..+ .++.+-..|..-|....+.++-.....
T Consensus 730 Ek~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQ-ecp~sg~LWaEaI~le~~~~rkTks~D 808 (913)
T KOG0495|consen 730 EKDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAELLMAKALQ-ECPSSGLLWAEAIWLEPRPQRKTKSID 808 (913)
T ss_pred HHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHH-hCCccchhHHHHHHhccCcccchHHHH
Confidence 8889999999999999998889999999999999999999999999998887 556677788888888888777666665
Q ss_pred HHHHHHhCCCCccHHHHHHHHHHHHhcCChHHHHHHHHHhHHHHhhhhhcCCCCc-HHHHHHHHHHHHhcCChhhHHHHH
Q 044770 326 LLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPW-LETTLSIIEIFAEKGDVGNAENLF 404 (464)
Q Consensus 326 ~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~ 404 (464)
.+++- .-|+.....+...|....+++.|...|+.++ ...|| -.+|..+...+...|.-++-.+++
T Consensus 809 ALkkc-----e~dphVllaia~lfw~e~k~~kar~Wf~Rav---------k~d~d~GD~wa~fykfel~hG~eed~kev~ 874 (913)
T KOG0495|consen 809 ALKKC-----EHDPHVLLAIAKLFWSEKKIEKAREWFERAV---------KKDPDNGDAWAWFYKFELRHGTEEDQKEVL 874 (913)
T ss_pred HHHhc-----cCCchhHHHHHHHHHHHHHHHHHHHHHHHHH---------ccCCccchHHHHHHHHHHHhCCHHHHHHHH
Confidence 55543 3477777788888999999999999999995 33443 456778888889999999999999
Q ss_pred HHHHHc
Q 044770 405 EELKKA 410 (464)
Q Consensus 405 ~~m~~~ 410 (464)
......
T Consensus 875 ~~c~~~ 880 (913)
T KOG0495|consen 875 KKCETA 880 (913)
T ss_pred HHHhcc
Confidence 888764
No 52
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.52 E-value=1.6e-09 Score=96.34 Aligned_cols=424 Identities=9% Similarity=0.012 Sum_probs=290.7
Q ss_pred cCccChhchHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCCchhHHHHHHHHHhhcChHHHHHHhhhcCCC-------CC
Q 044770 21 GFPVHRGEIFHSINRLRKLQLNKRALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQGEKLFCCIPKD-------YQ 93 (464)
Q Consensus 21 g~~~~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-------~~ 93 (464)
|+..++....-+.+.+.-.|+++.|..+...-.- ..-|..........+.+..++++|..++...... ..
T Consensus 44 ~l~~dp~d~~~~aq~l~~~~~y~ra~~lit~~~l---e~~d~~cryL~~~~l~~lk~~~~al~vl~~~~~~~~~f~yy~~ 120 (611)
T KOG1173|consen 44 GLTNDPADIYWLAQVLYLGRQYERAAHLITTYKL---EKRDIACRYLAAKCLVKLKEWDQALLVLGRGHVETNPFSYYEK 120 (611)
T ss_pred hccCChHHHHHHHHHHHhhhHHHHHHHHHHHhhh---hhhhHHHHHHHHHHHHHHHHHHHHHHHhcccchhhcchhhcch
Confidence 5667778888888888888888888777765422 1346667777777888888999999888843211 01
Q ss_pred ch-------hHH-----HHH-------HHHHHhhCcHHHHHHHHHHHHHcCCCCchhhHHHHHHHhcCC-----------
Q 044770 94 NE-------LLY-----NNL-------VIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSP----------- 143 (464)
Q Consensus 94 ~~-------~~~-----~~l-------i~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~----------- 143 (464)
+. ..+ +.- ...|....+.++|...|.+.....+. ....+..++....-.
T Consensus 121 ~~~~~l~~n~~~~~~~~~~essic~lRgk~y~al~n~~~ar~~Y~~Al~~D~~-c~Ea~~~lvs~~mlt~~Ee~~ll~~l 199 (611)
T KOG1173|consen 121 DAANTLELNSAGEDLMINLESSICYLRGKVYVALDNREEARDKYKEALLADAK-CFEAFEKLVSAHMLTAQEEFELLESL 199 (611)
T ss_pred hhhceeccCcccccccccchhceeeeeeehhhhhccHHHHHHHHHHHHhcchh-hHHHHHHHHHHHhcchhHHHHHHhcc
Confidence 10 001 000 11244445566666666655543211 112222222221110
Q ss_pred -------CCcccHHHHHHHH----H------------hCCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCcH
Q 044770 144 -------GRRKTIPNILRQM----K------------ADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNE 200 (464)
Q Consensus 144 -------~~~~~a~~~~~~~----~------------~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~ 200 (464)
.+.+....+|+-. . -.++..++.......+-+-..+++.+..++++...+.. ++..
T Consensus 200 ~~a~~~~ed~e~l~~lyel~~~k~~n~~~~~r~~~~sl~~l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~ 278 (611)
T KOG1173|consen 200 DLAMLTKEDVERLEILYELKLCKNRNEESLTRNEDESLIGLAENLDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHL 278 (611)
T ss_pred cHHhhhhhHHHHHHHHHHhhhhhhccccccccCchhhhhhhhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCc
Confidence 0111111122211 0 01223344444555566777899999999999988764 4556
Q ss_pred hHHHHHHHHHHhcChhhHHHHHHHHHHhccCCCChhhHHHHHHHHHhhcChhhHHHHHHHhccCCCCchhhHHHHHHHhh
Q 044770 201 VSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFG 280 (464)
Q Consensus 201 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 280 (464)
..+..-|.++...|+..+-..+-.++.+. .|..+.+|-++...|...|+.++|.+.|.......+.-...|-.+...|+
T Consensus 279 ~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aVg~YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa 357 (611)
T KOG1173|consen 279 PCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAVGCYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFA 357 (611)
T ss_pred chHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhh
Confidence 66666677888999888877777777775 55667899999999999999999999999998877777778999999999
Q ss_pred ccCChHHHHHHHHHHHhccccCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCc-cHHHHHHHHHHHHhcCChHHHH
Q 044770 281 RIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKP-NAITYRHLALGCFKSNLVEEGF 359 (464)
Q Consensus 281 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~~~~~a~ 359 (464)
-.|..++|+..+....+. ++-....+--+.--|.+.+.++-|.+.|.+... +.| |+..++-+.-.....+.+.+|.
T Consensus 358 ~e~EhdQAmaaY~tAarl-~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~a--i~P~Dplv~~Elgvvay~~~~y~~A~ 434 (611)
T KOG1173|consen 358 GEGEHDQAMAAYFTAARL-MPGCHLPSLYLGMEYMRTNNLKLAEKFFKQALA--IAPSDPLVLHELGVVAYTYEEYPEAL 434 (611)
T ss_pred hcchHHHHHHHHHHHHHh-ccCCcchHHHHHHHHHHhccHHHHHHHHHHHHh--cCCCcchhhhhhhheeehHhhhHHHH
Confidence 999999999999887763 222222344455568889999999999999887 556 5666777766677789999999
Q ss_pred HHHHHhHHHHhhhhhcCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCcHHHHHHHHHHHHHcCCC--hhHHH
Q 044770 360 KALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKIN--DPNLL 437 (464)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~--a~~~~ 437 (464)
.+|+..+....+ ......-...+++.|.++|.+.+.+++|+..++...... +.+..++.++--.|...|+. |.+.|
T Consensus 435 ~~f~~~l~~ik~-~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~-~k~~~~~asig~iy~llgnld~Aid~f 512 (611)
T KOG1173|consen 435 KYFQKALEVIKS-VLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLS-PKDASTHASIGYIYHLLGNLDKAIDHF 512 (611)
T ss_pred HHHHHHHHHhhh-ccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcC-CCchhHHHHHHHHHHHhcChHHHHHHH
Confidence 999999744332 111222366778999999999999999999999988754 35777999988888888974 88888
Q ss_pred HHHHhCCCCCCHHHHHHHHH
Q 044770 438 RRMILGGARPDAETYSLLKL 457 (464)
Q Consensus 438 ~~m~~~~~~p~~~t~~~L~~ 457 (464)
.+-.. +.||..+...++.
T Consensus 513 hKaL~--l~p~n~~~~~lL~ 530 (611)
T KOG1173|consen 513 HKALA--LKPDNIFISELLK 530 (611)
T ss_pred HHHHh--cCCccHHHHHHHH
Confidence 87765 7898877754443
No 53
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.49 E-value=1.2e-10 Score=108.42 Aligned_cols=413 Identities=12% Similarity=0.015 Sum_probs=237.6
Q ss_pred hhhHHHHhhcCccChhchHHHHHHHHhhcchHHHHHHHHHHHHc-----------------------CCCCCCchhHHHH
Q 044770 12 SAFQSWMREGFPVHRGEIFHSINRLRKLQLNKRALEVMEWVIRE-----------------------RPYRPKELDYSYL 68 (464)
Q Consensus 12 ~~l~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~-----------------------~~~~~~~~~~~~l 68 (464)
.++-.+...|+.|+..+|.+++..|+..|+.+.|- +|..|.-+ .+-.|...+|..|
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpkep~aDtyt~L 89 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPKEPLADTYTNL 89 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCCCCchhHHHHH
Confidence 57778888999999999999999999999999888 76666531 1234667789999
Q ss_pred HHHHHhhcChHH---HHHHhhhcCCC-----------------------CCchhHHHHHHHHHHhhCcHHHHHHHH----
Q 044770 69 LEFTIKNHGISQ---GEKLFCCIPKD-----------------------YQNELLYNNLVIACLDKGVIKLSLEYM---- 118 (464)
Q Consensus 69 ~~~~~~~g~~~~---a~~~~~~~~~~-----------------------~~~~~~~~~li~~~~~~~~~~~a~~~~---- 118 (464)
..+|...|++.. ..+.++.+... -|+.. .++......|-++.+++++
T Consensus 90 l~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~---n~illlv~eglwaqllkll~~~P 166 (1088)
T KOG4318|consen 90 LKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAE---NAILLLVLEGLWAQLLKLLAKVP 166 (1088)
T ss_pred HHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHH---HHHHHHHHHHHHHHHHHHHhhCC
Confidence 999999988654 33322221111 11111 1111122222222222222
Q ss_pred ------------HH-------------HHHcCC-CCchhhHHHHHHHhcCCCCcccHHHHHHHHHhCCCCCChhhHHHHH
Q 044770 119 ------------KK-------------MRVLGH-SISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILM 172 (464)
Q Consensus 119 ------------~~-------------m~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 172 (464)
++ |.+.+. .|+..+|.+++......|+.+.|..++.+|.+.|++.+..-|-.|+
T Consensus 167 vsa~~~p~~vfLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~HyFwpLl 246 (1088)
T KOG4318|consen 167 VSAWNAPFQVFLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHYFWPLL 246 (1088)
T ss_pred cccccchHHHHHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccccchhhh
Confidence 11 111112 4788899999999999999999999999999999888888777776
Q ss_pred HHHHccCChhHHHHHHHHHHhCCCCCcHhHHHHHHHHHHhcChhhH------------------------HHHHHHHH--
Q 044770 173 KIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTV------------------------AETYVEAL-- 226 (464)
Q Consensus 173 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~------------------------a~~~~~~~-- 226 (464)
-+ .++...+..++.-|.+.|+.|+..|+...+..+.++|.... |.+.++.-
T Consensus 247 ~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~e~sq~~hg~tAavrsaa~rg~~a~k~l~~nl~ 323 (1088)
T KOG4318|consen 247 LG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGEEGSQLAHGFTAAVRSAACRGLLANKRLRQNLR 323 (1088)
T ss_pred hc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhcccccchhhhhhHHHHHHHhcccHhHHHHHHHHH
Confidence 55 78888888899999999999999998876666655333211 11111110
Q ss_pred ----------HhccCCCChhhHHHHHHHHHhhcChhhHHHHHHHhcc----CCCCchhhHHHHHHHhhccCC--------
Q 044770 227 ----------EKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQE----LPNVRSKSYVLAIEAFGRIAQ-------- 284 (464)
Q Consensus 227 ----------~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~~~~l~~~~~~~g~-------- 284 (464)
.-.|+......|..... ....|..+..+++...+.. ..+.+...|..++.-|.+.-+
T Consensus 324 ~~v~~s~k~~fLlg~d~~~aiws~c~~-l~hQgk~e~veqlvg~l~npt~r~s~~~V~a~~~~lrqyFrr~e~~~~~~i~ 402 (1088)
T KOG4318|consen 324 KSVIGSTKKLFLLGTDILEAIWSMCEK-LRHQGKGEEVEQLVGQLLNPTLRDSGQNVDAFGALLRQYFRRIERHICSRIY 402 (1088)
T ss_pred HHHHHHhhHHHHhccccchHHHHHHHH-HHHcCCCchHHHHHhhhcCCccccCcchHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 00111112222222222 2225666666666666544 111122234444433332111
Q ss_pred --------------hHHHHHHHHHHHhccccCChh----------------------------hHHHHHHHHHhcCChhH
Q 044770 285 --------------VSRAEELWLEMQSVKQLKATE----------------------------QYNSVISVYCKNGFIDK 322 (464)
Q Consensus 285 --------------~~~a~~~~~~~~~~~~~~~~~----------------------------~~~~li~~~~~~~~~~~ 322 (464)
..+..++.... .||.. .-+.++..+++.-+..+
T Consensus 403 ~~~qgls~~l~se~tp~vsell~~l-----rkns~lr~lv~Lss~Eler~he~~~~~~h~irdi~~ql~l~l~se~n~lK 477 (1088)
T KOG4318|consen 403 YAGQGLSLNLNSEDTPRVSELLENL-----RKNSFLRQLVGLSSTELERSHEPWPLIAHLIRDIANQLHLTLNSEYNKLK 477 (1088)
T ss_pred HHHHHHHhhhchhhhHHHHHHHHHh-----CcchHHHHHhhhhHHHHhcccccchhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 11111111111 11110 11233334444333334
Q ss_pred HHHHHHHHHhCCCCccHHHHHHHHHHHHhcCChHHHHHHHHHhHHHHhhhhhcCCCCcHHHHHHHHHHHHhcCChhhHHH
Q 044770 323 ASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAEN 402 (464)
Q Consensus 323 a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 402 (464)
++..-...... ..| ..|..+|.-+....+.+.|..+.++... ....+..+..-+..+.+.+.+.+...++..
T Consensus 478 ~l~~~ekye~~-lf~--g~ya~Li~l~~~hdkle~Al~~~~e~d~-----~d~s~~Ld~~~m~~l~dLL~r~~~l~dl~t 549 (1088)
T KOG4318|consen 478 ILCDEEKYEDL-LFA--GLYALLIKLMDLHDKLEYALSFVDEIDT-----RDESIHLDLPLMTSLQDLLQRLAILYDLST 549 (1088)
T ss_pred HHHHHHHHHHH-Hhh--hHHHHHhhhHHHHHHHHHHHhchhhhcc-----cchhhhcccHhHHHHHHHHHHhHHHHHHHH
Confidence 43332222221 111 4577888888888888888888887732 333445566677888899999999999999
Q ss_pred HHHHHHHcCC-CCc-HHHHHHHHHHHHHcCCC-hh-HHHHHHHhCCC
Q 044770 403 LFEELKKANY-TKY-TFVYNTLIKAYVKAKIN-DP-NLLRRMILGGA 445 (464)
Q Consensus 403 ~~~~m~~~~~-~p~-~~~~~~li~~~~~~g~~-a~-~~~~~m~~~~~ 445 (464)
+++++.+.-. .|+ ..++-.++++....|+. ++ ++++-....|+
T Consensus 550 iL~e~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~lvslgl 596 (1088)
T KOG4318|consen 550 ILYEDKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLADILVSLGL 596 (1088)
T ss_pred HHhhhhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhh
Confidence 9988886322 222 23555666666666653 43 44444444444
No 54
>PF13041 PPR_2: PPR repeat family
Probab=99.47 E-value=1.3e-13 Score=84.52 Aligned_cols=50 Identities=30% Similarity=0.460 Sum_probs=46.8
Q ss_pred CcHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCcHHHHHHHHHHHHH
Q 044770 379 PWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVK 428 (464)
Q Consensus 379 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~ 428 (464)
||..+||++|++|++.|++++|.++|++|.+.|+.||..||+.+|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 78999999999999999999999999999999999999999999999875
No 55
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.47 E-value=1e-11 Score=115.48 Aligned_cols=254 Identities=18% Similarity=0.127 Sum_probs=140.5
Q ss_pred HHHHHHHcCCCCchhhHHHHHHHhcCCCCcccHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhCCC
Q 044770 117 YMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEV 196 (464)
Q Consensus 117 ~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~ 196 (464)
++-.+...|+.|+..||..+|.-|+..|+.+.|- +|.-|.-..++.+...|+.++.+....++.+.+.
T Consensus 12 fla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk----------- 79 (1088)
T KOG4318|consen 12 FLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK----------- 79 (1088)
T ss_pred HHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-----------
Confidence 4455666777777777777777777777777777 7777776666677777777777777777666554
Q ss_pred CCcHhHHHHHHHHHHhcChhhH---HHHHHHHHH----hccCCCChhhH--------------HHHHHHHHhhcChhhHH
Q 044770 197 EPNEVSYCILATAHAVARLYTV---AETYVEALE----KSMTGNNWSTL--------------DVLIILYGYLAKGKDLE 255 (464)
Q Consensus 197 ~p~~~~~~~li~~~~~~~~~~~---a~~~~~~~~----~~~~~~~~~~~--------------~~l~~~~~~~~~~~~a~ 255 (464)
.|...||..+..+|...||... +.+.+..+. ..|+......+ ...+......|-++.+.
T Consensus 80 ep~aDtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqll 159 (1088)
T KOG4318|consen 80 EPLADTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLL 159 (1088)
T ss_pred CCchhHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHH
Confidence 5667777777777777777644 111111111 11111111111 11122223333444444
Q ss_pred HHHHHhccCCCCchhhHHHHHHHhhccCChHHHHHHHHHHHhccccCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 044770 256 RIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGC 335 (464)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~ 335 (464)
+++..+.......+..+ +++-+.... ...+++........-.|++.+|..++.+-.-+|+.+.|..++.+|.+.|+
T Consensus 160 kll~~~Pvsa~~~p~~v--fLrqnv~~n--tpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gf 235 (1088)
T KOG4318|consen 160 KLLAKVPVSAWNAPFQV--FLRQNVVDN--TPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGF 235 (1088)
T ss_pred HHHhhCCcccccchHHH--HHHHhccCC--chHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCC
Confidence 44433333222222111 233222221 12223333222211136667777777777777777777777777777777
Q ss_pred CccHHHHHHHHHHHHhcCChHHHHHHHHHhHHHHhhhhhcCCCCcHHHHHHHHHHHHhcCC
Q 044770 336 KPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGD 396 (464)
Q Consensus 336 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~ 396 (464)
+.+..-|..++-+ .++..-+..++..| ...|+.|+..|+...+..+.+.|.
T Consensus 236 pir~HyFwpLl~g---~~~~q~~e~vlrgm-------qe~gv~p~seT~adyvip~l~N~~ 286 (1088)
T KOG4318|consen 236 PIRAHYFWPLLLG---INAAQVFEFVLRGM-------QEKGVQPGSETQADYVIPQLSNGQ 286 (1088)
T ss_pred Ccccccchhhhhc---CccchHHHHHHHHH-------HHhcCCCCcchhHHHHHhhhcchh
Confidence 6666666666554 55555555555555 566777777776666666655444
No 56
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.47 E-value=9.5e-12 Score=102.72 Aligned_cols=237 Identities=11% Similarity=-0.007 Sum_probs=197.4
Q ss_pred hhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCcHhHHHHHHHHHHhcChhhHHHHHHHHHHhccCCCChhhHHHHHHHH
Q 044770 166 STFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILY 245 (464)
Q Consensus 166 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 245 (464)
..-+.+.++|.+.|-+.+|.+.|+.-.+. .|-+.||-.|-+.|.+..++..|+.++.+-.+. .+.++....-+.+.+
T Consensus 224 wWk~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~ 300 (478)
T KOG1129|consen 224 WWKQQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIH 300 (478)
T ss_pred HHHHHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHH
Confidence 33467889999999999999999988876 677889999999999999999999999988775 445555556677888
Q ss_pred HhhcChhhHHHHHHHhccCCCCchhhHHHHHHHhhccCChHHHHHHHHHHHhccccCChhhHHHHHHHHHhcCChhHHHH
Q 044770 246 GYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASG 325 (464)
Q Consensus 246 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~ 325 (464)
-..++.+++.++++.+.+..+.+.....++...|.-.++++-|++.++++.+.|.. ++..|+.+.-+|.-.+++|-++.
T Consensus 301 eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~ 379 (478)
T KOG1129|consen 301 EAMEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLP 379 (478)
T ss_pred HHHHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHH
Confidence 88999999999999999988888878888888999999999999999999998875 78899999999999999999999
Q ss_pred HHHHHHhCCCCccH--HHHHHHHHHHHhcCChHHHHHHHHHhHHHHhhhhhcCCCCcHHHHHHHHHHHHhcCChhhHHHH
Q 044770 326 LLKEMSMNGCKPNA--ITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENL 403 (464)
Q Consensus 326 ~~~~m~~~g~~p~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 403 (464)
-|.+....--.|+. ..|..+.......||+..|.+.|..++ .....+...+|.|.-.-.+.|++++|..+
T Consensus 380 sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL--------~~d~~h~ealnNLavL~~r~G~i~~Arsl 451 (478)
T KOG1129|consen 380 SFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLAL--------TSDAQHGEALNNLAVLAARSGDILGARSL 451 (478)
T ss_pred HHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHh--------ccCcchHHHHHhHHHHHhhcCchHHHHHH
Confidence 99998875555553 457777777788899999999999884 33344567788888888899999999999
Q ss_pred HHHHHHcCCCCcH
Q 044770 404 FEELKKANYTKYT 416 (464)
Q Consensus 404 ~~~m~~~~~~p~~ 416 (464)
+....... |+.
T Consensus 452 l~~A~s~~--P~m 462 (478)
T KOG1129|consen 452 LNAAKSVM--PDM 462 (478)
T ss_pred HHHhhhhC--ccc
Confidence 98887643 544
No 57
>PRK12370 invasion protein regulator; Provisional
Probab=99.46 E-value=3.5e-11 Score=114.94 Aligned_cols=213 Identities=11% Similarity=-0.024 Sum_probs=101.2
Q ss_pred hHHHHHHhhhcCCCCC-chhHHHHHHHHHHh---------hCcHHHHHHHHHHHHHcCCCCchhhHHHHHHHhcCCCCcc
Q 044770 78 ISQGEKLFCCIPKDYQ-NELLYNNLVIACLD---------KGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRK 147 (464)
Q Consensus 78 ~~~a~~~~~~~~~~~~-~~~~~~~li~~~~~---------~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~ 147 (464)
.++|...|++.....| +...|..+..++.. .+++++|...+++..+.+ +-+...+..+...+...|+++
T Consensus 277 ~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ld-P~~~~a~~~lg~~~~~~g~~~ 355 (553)
T PRK12370 277 LQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELD-HNNPQALGLLGLINTIHSEYI 355 (553)
T ss_pred HHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHccCHH
Confidence 4455555655555433 23344444333321 123555555555555543 223444555555555555566
Q ss_pred cHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCcH-hHHHHHHHHHHhcChhhHHHHHHHHH
Q 044770 148 TIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNE-VSYCILATAHAVARLYTVAETYVEAL 226 (464)
Q Consensus 148 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~-~~~~~li~~~~~~~~~~~a~~~~~~~ 226 (464)
+|...|++..+.+ +.+...+..+...+...|++++|...+++..+.. |+. ..+..++..+...|++++|...+++.
T Consensus 356 ~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~--P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~ 432 (553)
T PRK12370 356 VGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLKLD--PTRAAAGITKLWITYYHTGIDDAIRLGDEL 432 (553)
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCChhhHHHHHHHHHhccCHHHHHHHHHHH
Confidence 6666666555543 3334445555555555566666666665555442 221 12222233344455555555555555
Q ss_pred HhccCCCChhhHHHHHHHHHhhcChhhHHHHHHHhccCCCCchhhHHHHHHHhhccCChHHHHHHHHHHH
Q 044770 227 EKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQ 296 (464)
Q Consensus 227 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 296 (464)
.....+.++..+..+..++...|+.++|...+..+....+......+.+...|...| +.|...++.+.
T Consensus 433 l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll 500 (553)
T PRK12370 433 RSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNS--ERALPTIREFL 500 (553)
T ss_pred HHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccH--HHHHHHHHHHH
Confidence 443222223334444455555555555555555544443333333444444444444 24444444433
No 58
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.44 E-value=1.6e-11 Score=101.48 Aligned_cols=231 Identities=10% Similarity=0.013 Sum_probs=113.5
Q ss_pred HHHHHHHHhhcChHHHHHHhhhcCCCCCchhHHHHHHHHHHhhCcHHHHHHHHHHHHHcCCCCchhhHHHHHHHhcCCCC
Q 044770 66 SYLLEFTIKNHGISQGEKLFCCIPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGR 145 (464)
Q Consensus 66 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~ 145 (464)
+.+..+|.+.|-+.+|.+.|+...+..|-+.+|-.|-.+|.+..++..|+.++.+-.+. .+-|+.......+.+-..++
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~eam~~ 305 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQFPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIHEAMEQ 305 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhcCCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHHHHHHh
Confidence 44444555555555555555554444444455555555555555555555555444442 22233333334444444455
Q ss_pred cccHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCcHhHHHHHHHHHHhcChhhHHHHHHHH
Q 044770 146 RKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEA 225 (464)
Q Consensus 146 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~ 225 (464)
.++|.++++...+.. +.++.....+...|.-.++++-|+.+|+.+.+.|+. +...|+.+.-+|.-.++++.++.-|++
T Consensus 306 ~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~sf~R 383 (478)
T KOG1129|consen 306 QEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSFQR 383 (478)
T ss_pred HHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHHHHH
Confidence 555555555544432 333333333444444445555555555555555433 444444444444445555555444444
Q ss_pred HHhccCCCChhhHHHHHHHHHhhcChhhHHHHHHHhccCCCCchhhHHHHHHHhhccCChHHHHHHHHHHHhccccCChh
Q 044770 226 LEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATE 305 (464)
Q Consensus 226 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 305 (464)
.+..-.. +..-..+|-.+.......|++..|.+.|+.....+ ..+..
T Consensus 384 Alstat~--------------------------------~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d-~~h~e 430 (478)
T KOG1129|consen 384 ALSTATQ--------------------------------PGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD-AQHGE 430 (478)
T ss_pred HHhhccC--------------------------------cchhhhhhhccceeEEeccchHHHHHHHHHHhccC-cchHH
Confidence 4333222 22233345555555555666666666666555522 22445
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHh
Q 044770 306 QYNSVISVYCKNGFIDKASGLLKEMSM 332 (464)
Q Consensus 306 ~~~~li~~~~~~~~~~~a~~~~~~m~~ 332 (464)
.+|.+.-.-.+.|++++|..++.....
T Consensus 431 alnNLavL~~r~G~i~~Arsll~~A~s 457 (478)
T KOG1129|consen 431 ALNNLAVLAARSGDILGARSLLNAAKS 457 (478)
T ss_pred HHHhHHHHHhhcCchHHHHHHHHHhhh
Confidence 566665555666666666666665554
No 59
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.44 E-value=9.8e-10 Score=95.98 Aligned_cols=368 Identities=13% Similarity=0.050 Sum_probs=247.0
Q ss_pred HHHHHHHHhhcChHHHHHHhhhcCCCCCc-hhHHHHHHHHHHhhCcHHHHHHHHHHHHHcCCCCc-hhhHHHHHHHhcCC
Q 044770 66 SYLLEFTIKNHGISQGEKLFCCIPKDYQN-ELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSIS-YLVFNRLIILNSSP 143 (464)
Q Consensus 66 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~l~~~~~~~ 143 (464)
-...+-|.+.|++++|++.+.......|+ ...|.....+|...|+|++..+.-.+.++. .|+ +..+..-.+++-..
T Consensus 119 K~~GN~~f~~kkY~eAIkyY~~AI~l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl--~P~Y~KAl~RRA~A~E~l 196 (606)
T KOG0547|consen 119 KTKGNKFFRNKKYDEAIKYYTQAIELCPDEPIFYSNRAACYESLGDWEKVIEDCTKALEL--NPDYVKALLRRASAHEQL 196 (606)
T ss_pred HhhhhhhhhcccHHHHHHHHHHHHhcCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhc--CcHHHHHHHHHHHHHHhh
Confidence 44556678899999999999999888777 788999999999999999999988777764 344 23344444444455
Q ss_pred CCcccHH----------------------HHHHHH---------HhCC--CCCChhhHHHHHHHHHc-------------
Q 044770 144 GRRKTIP----------------------NILRQM---------KADK--VAPHVSTFHILMKIEAN------------- 177 (464)
Q Consensus 144 ~~~~~a~----------------------~~~~~~---------~~~~--~~~~~~~~~~l~~~~~~------------- 177 (464)
|++++|. +++... .+.+ +-|+.....+....+..
T Consensus 197 g~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~~~~ks 276 (606)
T KOG0547|consen 197 GKFDEALFDVTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFDNKSDKS 276 (606)
T ss_pred ccHHHHHHhhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccccccCCCccc
Confidence 5544432 222221 1111 12333322222222211
Q ss_pred ------------cC---ChhHHHHHHHHHHhC-CCCCc-----HhHHHHHHHH-------HHhcChhhHHHHHHHHHHhc
Q 044770 178 ------------DH---NIEGLMKVYSDMKRS-EVEPN-----EVSYCILATA-------HAVARLYTVAETYVEALEKS 229 (464)
Q Consensus 178 ------------~~---~~~~a~~~~~~m~~~-~~~p~-----~~~~~~li~~-------~~~~~~~~~a~~~~~~~~~~ 229 (464)
.+ .+..|...+.+-... -..++ ... ..+..+ +.-.|+.-.|..-|+...+.
T Consensus 277 Da~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~l-e~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~l 355 (606)
T KOG0547|consen 277 DAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAEL-EYMAEALLLRGTFHFLKGDSLGAQEDFDAAIKL 355 (606)
T ss_pred hhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhH-HHHHHHHHHhhhhhhhcCCchhhhhhHHHHHhc
Confidence 01 112222222111100 00111 111 111222 23467888888888888776
Q ss_pred cCCCChhhHHHHHHHHHhhcChhhHHHHHHHhccCCCCchhhHHHHHHHhhccCChHHHHHHHHHHHhccccCChhhHHH
Q 044770 230 MTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNS 309 (464)
Q Consensus 230 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 309 (464)
...++ ..|-.+..+|....+.++..+.|.......+.++.+|-.-...+.-.+++++|..=|++..... +-+...|--
T Consensus 356 ~~~~~-~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~-pe~~~~~iQ 433 (606)
T KOG0547|consen 356 DPAFN-SLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAISLD-PENAYAYIQ 433 (606)
T ss_pred Ccccc-hHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcC-hhhhHHHHH
Confidence 44333 3377778889999999999999999999888888889999999999999999999999998843 225566666
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCccHHHHHHHHHHHHhcCChHHHHHHHHHhHHHHhhhhhcCCCCcHHHHHHHHH
Q 044770 310 VISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIE 389 (464)
Q Consensus 310 li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~ 389 (464)
+-.+..+.++++++...|++.+++ ++--+..|+.....+...++++.|.+.|+.++++.+......+.+...+.-+++.
T Consensus 434 l~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~ 512 (606)
T KOG0547|consen 434 LCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLV 512 (606)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhh
Confidence 777777889999999999999886 4445788999999999999999999999999876442222222333333333333
Q ss_pred HHHhcCChhhHHHHHHHHHHcCCCCcHHHHHHHHHHHHHcCC--ChhHHHHHHH
Q 044770 390 IFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKI--NDPNLLRRMI 441 (464)
Q Consensus 390 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~--~a~~~~~~m~ 441 (464)
.-. .+++..|.++++...+.+. .....|.+|-..-.+.|+ +|+++|++-.
T Consensus 513 ~qw-k~d~~~a~~Ll~KA~e~Dp-kce~A~~tlaq~~lQ~~~i~eAielFEksa 564 (606)
T KOG0547|consen 513 LQW-KEDINQAENLLRKAIELDP-KCEQAYETLAQFELQRGKIDEAIELFEKSA 564 (606)
T ss_pred hch-hhhHHHHHHHHHHHHccCc-hHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 333 3899999999999998652 234489999999999997 4888888644
No 60
>PF13041 PPR_2: PPR repeat family
Probab=99.43 E-value=3.4e-13 Score=82.65 Aligned_cols=50 Identities=24% Similarity=0.479 Sum_probs=38.5
Q ss_pred CChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCcHhHHHHHHHHHHh
Q 044770 163 PHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAV 212 (464)
Q Consensus 163 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~ 212 (464)
||+.+||++|++|++.|++++|.++|++|.+.|+.||..||+.+|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 67777777777777777777777777777777777777777777777753
No 61
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.42 E-value=2.9e-09 Score=94.81 Aligned_cols=286 Identities=11% Similarity=-0.022 Sum_probs=160.9
Q ss_pred chhhHHHHHHHhcCCCCcccHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCcHhHHHHHHH
Q 044770 129 SYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILAT 208 (464)
Q Consensus 129 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~ 208 (464)
+.........-+...+++.+..++.+...+.. ++....+..-|.++...|+..+-..+=.+|++.- +-...+|-++.-
T Consensus 243 ~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y-P~~a~sW~aVg~ 320 (611)
T KOG1173|consen 243 NLDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLY-PSKALSWFAVGC 320 (611)
T ss_pred cHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhC-CCCCcchhhHHH
Confidence 33344444445555666666666666665543 4555555555556666666666555555665542 224556666666
Q ss_pred HHHhcChhhHHHHHHHHHHhccCCCChhhHHHHHHHHHhhcChhhHHHHHHHhccCCCCchhhHHHHHHHhhccCChHHH
Q 044770 209 AHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRA 288 (464)
Q Consensus 209 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 288 (464)
-|...|+..+|.++|.+....... -...|..+...+.-.+..++|...+....+..+.....+--+.--|.+.++.+.|
T Consensus 321 YYl~i~k~seARry~SKat~lD~~-fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kLA 399 (611)
T KOG1173|consen 321 YYLMIGKYSEARRYFSKATTLDPT-FGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKLA 399 (611)
T ss_pred HHHHhcCcHHHHHHHHHHhhcCcc-ccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHHH
Confidence 666666666666666665433111 1234555666666666666666666655553333332344455556666666666
Q ss_pred HHHHHHHHhccccCChhhHHHHHHHHHhcCChhHHHHHHHHHHhC----C--CCccHHHHHHHHHHHHhcCChHHHHHHH
Q 044770 289 EELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMN----G--CKPNAITYRHLALGCFKSNLVEEGFKAL 362 (464)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----g--~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 362 (464)
.+.|..... -.+-|+...+-+.-.....+.+.+|..+|+..... + ...-..+++.|..+|.+.+.+++|+..+
T Consensus 400 e~Ff~~A~a-i~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~ 478 (611)
T KOG1173|consen 400 EKFFKQALA-IAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYY 478 (611)
T ss_pred HHHHHHHHh-cCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHH
Confidence 666666665 23335555666655555566666666666655421 0 0113345666666666777777777777
Q ss_pred HHhHHHHhhhhhcCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCcHHHHHHHHHHHHH
Q 044770 363 ELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVK 428 (464)
Q Consensus 363 ~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~ 428 (464)
+.++. -.+-+..++.++.-.|...|+++.|.+.|.+... +.|+..+-..++..+..
T Consensus 479 q~aL~--------l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~--l~p~n~~~~~lL~~aie 534 (611)
T KOG1173|consen 479 QKALL--------LSPKDASTHASIGYIYHLLGNLDKAIDHFHKALA--LKPDNIFISELLKLAIE 534 (611)
T ss_pred HHHHH--------cCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHh--cCCccHHHHHHHHHHHH
Confidence 66641 2233555666666666667777777777666554 34666555555554433
No 62
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.41 E-value=3.3e-08 Score=89.66 Aligned_cols=405 Identities=12% Similarity=0.086 Sum_probs=254.1
Q ss_pred ccChhchHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCCchhHHHHHHHHHhhcChHHHHHHhhhcCCC-CCchhHHHHH
Q 044770 23 PVHRGEIFHSINRLRKLQLNKRALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQGEKLFCCIPKD-YQNELLYNNL 101 (464)
Q Consensus 23 ~~~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~l 101 (464)
+|-..++..-+--+...+++...+.+.+.+.+..+ --..+.....-.+...|+.++|.......... ..+.+.|..+
T Consensus 4 ~~KE~~lF~~~lk~yE~kQYkkgLK~~~~iL~k~~--eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~ 81 (700)
T KOG1156|consen 4 SPKENALFRRALKCYETKQYKKGLKLIKQILKKFP--EHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVL 81 (700)
T ss_pred ChHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhCC--ccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHH
Confidence 44444555545556677888999999998888443 33445555556677889999998888877665 5577889999
Q ss_pred HHHHHhhCcHHHHHHHHHHHHHcCCCCchhhHHHHHHHhcCCCCcccHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCh
Q 044770 102 VIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNI 181 (464)
Q Consensus 102 i~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 181 (464)
.-.+....++++|++.|......+ +-|...+.-+.-.-++.|+++.....-.+..+.. +.....|..+..++.-.|+.
T Consensus 82 gl~~R~dK~Y~eaiKcy~nAl~~~-~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~-~~~ra~w~~~Avs~~L~g~y 159 (700)
T KOG1156|consen 82 GLLQRSDKKYDEAIKCYRNALKIE-KDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLR-PSQRASWIGFAVAQHLLGEY 159 (700)
T ss_pred HHHHhhhhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHH
Confidence 888888899999999999888764 4456677776666677788888877777777653 44456677777788888888
Q ss_pred hHHHHHHHHHHhCC-CCCcHhHHHHHHHH------HHhcChhhHHHHHHHHHHhccCCCChhhHHHHHHHHHhhcChhhH
Q 044770 182 EGLMKVYSDMKRSE-VEPNEVSYCILATA------HAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDL 254 (464)
Q Consensus 182 ~~a~~~~~~m~~~~-~~p~~~~~~~li~~------~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 254 (464)
..|..++++..+.. -.|+...|...... ..+.|..+.|.+.+...... +......-..-...+.+.++.++|
T Consensus 160 ~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~-i~Dkla~~e~ka~l~~kl~~lEeA 238 (700)
T KOG1156|consen 160 KMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ-IVDKLAFEETKADLLMKLGQLEEA 238 (700)
T ss_pred HHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH-HHHHHHHhhhHHHHHHHHhhHHhH
Confidence 88888888887654 24565555443322 33456666666655544332 222222233344556677777777
Q ss_pred HHHHHHhccCCCCchhhHHHHHHHhhc-cCChHHHHHHHH----------------------------------HHHhcc
Q 044770 255 ERIWATVQELPNVRSKSYVLAIEAFGR-IAQVSRAEELWL----------------------------------EMQSVK 299 (464)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~a~~~~~----------------------------------~~~~~~ 299 (464)
..++..+....+.+..-|..+..++.+ .+..+....+|. .+.+.|
T Consensus 239 ~~~y~~Ll~rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg 318 (700)
T KOG1156|consen 239 VKVYRRLLERNPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKG 318 (700)
T ss_pred HHHHHHHHhhCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHhCcchhHHHHHHHHHHHhhcC
Confidence 777777776665555555555444432 222222223333 333334
Q ss_pred ccCChhhHHHHHHHHHhcCChhHHHHHHHHHH----hCCC----------CccHHH--HHHHHHHHHhcCChHHHHHHHH
Q 044770 300 QLKATEQYNSVISVYCKNGFIDKASGLLKEMS----MNGC----------KPNAIT--YRHLALGCFKSNLVEEGFKALE 363 (464)
Q Consensus 300 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~----~~g~----------~p~~~~--~~~ll~~~~~~~~~~~a~~~~~ 363 (464)
+++ ++..+..-|-.....+-..++.-.+. ..|. +|.... +..+.+.+-+.|+++.|..+++
T Consensus 319 ~p~---vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId 395 (700)
T KOG1156|consen 319 VPS---VFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYID 395 (700)
T ss_pred CCc---hhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHH
Confidence 433 33444333332222221111111111 1111 344443 4456677889999999999999
Q ss_pred HhHHHHhhhhhcCCCCcH-HHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCcHHHHHHHHHHHHHcCC--ChhHHHHHH
Q 044770 364 LGMKLITTKKVRSSTPWL-ETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKI--NDPNLLRRM 440 (464)
Q Consensus 364 ~~~~~~~~~~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~--~a~~~~~~m 440 (464)
.+ .+..|+. ..|..-.+.+...|++++|..++++..+.+. ||...-..-..-..+.++ +|.+++...
T Consensus 396 ~A---------IdHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~-aDR~INsKcAKYmLrAn~i~eA~~~~skF 465 (700)
T KOG1156|consen 396 LA---------IDHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDT-ADRAINSKCAKYMLRANEIEEAEEVLSKF 465 (700)
T ss_pred HH---------hccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccc-hhHHHHHHHHHHHHHccccHHHHHHHHHh
Confidence 88 5667765 4566667888899999999999999998653 555444355555556654 376666666
Q ss_pred HhCCC
Q 044770 441 ILGGA 445 (464)
Q Consensus 441 ~~~~~ 445 (464)
.+.|.
T Consensus 466 Tr~~~ 470 (700)
T KOG1156|consen 466 TREGF 470 (700)
T ss_pred hhccc
Confidence 66654
No 63
>PRK12370 invasion protein regulator; Provisional
Probab=99.40 E-value=1.2e-10 Score=111.17 Aligned_cols=215 Identities=9% Similarity=0.019 Sum_probs=158.8
Q ss_pred cchHHHHHHHHHHHHcCCCCCC-chhHHHHHHHHHh---------hcChHHHHHHhhhcCCCCC-chhHHHHHHHHHHhh
Q 044770 40 QLNKRALEVMEWVIRERPYRPK-ELDYSYLLEFTIK---------NHGISQGEKLFCCIPKDYQ-NELLYNNLVIACLDK 108 (464)
Q Consensus 40 ~~~~~A~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~---------~g~~~~a~~~~~~~~~~~~-~~~~~~~li~~~~~~ 108 (464)
+++++|+++|+...+. .|+ ...|..+..++.. .+++++|...+++.....| +..++..+...+...
T Consensus 275 ~~~~~A~~~~~~Al~l---dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~ 351 (553)
T PRK12370 275 YSLQQALKLLTQCVNM---SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIH 351 (553)
T ss_pred HHHHHHHHHHHHHHhc---CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc
Confidence 4567999999999874 344 3455555544432 2447899999999888744 678888898999999
Q ss_pred CcHHHHHHHHHHHHHcCCCCchhhHHHHHHHhcCCCCcccHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhHHHHHH
Q 044770 109 GVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVY 188 (464)
Q Consensus 109 ~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 188 (464)
|++++|...|++..+.+ +.+...+..+...+...|++++|...+++..+.. +.+...+..++..+...|++++|...+
T Consensus 352 g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~-P~~~~~~~~~~~~~~~~g~~eeA~~~~ 429 (553)
T PRK12370 352 SEYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLKLD-PTRAAAGITKLWITYYHTGIDDAIRLG 429 (553)
T ss_pred cCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCChhhHHHHHHHHHhccCHHHHHHHH
Confidence 99999999999999875 3456778888899999999999999999998864 223333344455566789999999999
Q ss_pred HHHHhCCCCC-cHhHHHHHHHHHHhcChhhHHHHHHHHHHhccCCCChhhHHHHHHHHHhhcChhhHHHHHHHhcc
Q 044770 189 SDMKRSEVEP-NEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQE 263 (464)
Q Consensus 189 ~~m~~~~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 263 (464)
++..... .| +...+..+..++...|+.++|...+.++... .+.+....+.+...+...| +.+...++.+.+
T Consensus 430 ~~~l~~~-~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~ 501 (553)
T PRK12370 430 DELRSQH-LQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ-EITGLIAVNLLYAEYCQNS--ERALPTIREFLE 501 (553)
T ss_pred HHHHHhc-cccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc-cchhHHHHHHHHHHHhccH--HHHHHHHHHHHH
Confidence 9987653 34 3445677778888999999999999887554 2223444555556667666 366666666544
No 64
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.40 E-value=1.6e-10 Score=98.34 Aligned_cols=96 Identities=13% Similarity=0.166 Sum_probs=46.1
Q ss_pred hhHHHHHHHHHHhhCcHHHHHHHHHHHHHcCCCCchhhHHHHHHHhcCCCCcccHHHHHHHHHhCCCCCChhhHHHHHHH
Q 044770 95 ELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKI 174 (464)
Q Consensus 95 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 174 (464)
...+..+...+...|++++|.+.+++..+.. +.+...+..+...+...|++++|.+.+++..+.. +.+...+..+...
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~ 108 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHH
Confidence 3445555555555555555555555555432 2233444444444555555555555555544432 2233344444444
Q ss_pred HHccCChhHHHHHHHHHH
Q 044770 175 EANDHNIEGLMKVYSDMK 192 (464)
Q Consensus 175 ~~~~~~~~~a~~~~~~m~ 192 (464)
+...|++++|.+.|++..
T Consensus 109 ~~~~g~~~~A~~~~~~~~ 126 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAI 126 (234)
T ss_pred HHHcccHHHHHHHHHHHH
Confidence 444455555555444444
No 65
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.39 E-value=6.6e-08 Score=87.66 Aligned_cols=406 Identities=11% Similarity=0.053 Sum_probs=250.5
Q ss_pred hhchHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCCchhHHHHHHHHHhhcChHHHHHHhhhcCCCCCchhHHHHHHHHH
Q 044770 26 RGEIFHSINRLRKLQLNKRALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQGEKLFCCIPKDYQNELLYNNLVIAC 105 (464)
Q Consensus 26 ~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~li~~~ 105 (464)
+..+...++.+..+|++......|+...+..++.--...|...+......|-++.+..++++..+. ++..-+-.|..+
T Consensus 102 pRIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~--~P~~~eeyie~L 179 (835)
T KOG2047|consen 102 PRIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV--APEAREEYIEYL 179 (835)
T ss_pred CHHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc--CHHHHHHHHHHH
Confidence 345566677788899999999999999887777666778888888888889999999999998874 444467778888
Q ss_pred HhhCcHHHHHHHHHHHHHcC------CCCchhhHHHHHHHhcCCCCc---ccHHHHHHHHHhCCCCCCh--hhHHHHHHH
Q 044770 106 LDKGVIKLSLEYMKKMRVLG------HSISYLVFNRLIILNSSPGRR---KTIPNILRQMKADKVAPHV--STFHILMKI 174 (464)
Q Consensus 106 ~~~~~~~~a~~~~~~m~~~~------~~~~~~~~~~l~~~~~~~~~~---~~a~~~~~~~~~~~~~~~~--~~~~~l~~~ 174 (464)
+..+++++|.+.+....... -+.+...|..+.+..++..+. -.+..++..+... -+|. ..|.+|.+.
T Consensus 180 ~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~r--ftDq~g~Lw~SLAdY 257 (835)
T KOG2047|consen 180 AKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRR--FTDQLGFLWCSLADY 257 (835)
T ss_pred HhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhccc--CcHHHHHHHHHHHHH
Confidence 89999999999988776421 244556677776666654432 2344555555443 3443 478999999
Q ss_pred HHccCChhHHHHHHHHHHhCCCCCcHhHHHHHHHHHHhcChh----------------------hHHHHHHHHHHhccC-
Q 044770 175 EANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLY----------------------TVAETYVEALEKSMT- 231 (464)
Q Consensus 175 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~----------------------~~a~~~~~~~~~~~~- 231 (464)
|.+.|.+++|..+|++..+. ..+..-|..+..+|+.-... +-.+.-|+.+.....
T Consensus 258 YIr~g~~ekarDvyeeai~~--v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~ 335 (835)
T KOG2047|consen 258 YIRSGLFEKARDVYEEAIQT--VMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPL 335 (835)
T ss_pred HHHhhhhHHHHHHHHHHHHh--heehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccch
Confidence 99999999999999998765 33455566666665532211 112222332222110
Q ss_pred ----------CCChhhHHHHHHHHHhhcChhhHHHHHHHhccCCCC------chhhHHHHHHHhhccCChHHHHHHHHHH
Q 044770 232 ----------GNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNV------RSKSYVLAIEAFGRIAQVSRAEELWLEM 295 (464)
Q Consensus 232 ----------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~------~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 295 (464)
+-+...|..- .-...|+..+....+.+......| ....|..+...|-..|+++.|..+|++.
T Consensus 336 ~lNsVlLRQn~~nV~eW~kR--V~l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka 413 (835)
T KOG2047|consen 336 LLNSVLLRQNPHNVEEWHKR--VKLYEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKA 413 (835)
T ss_pred HHHHHHHhcCCccHHHHHhh--hhhhcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHh
Confidence 0011111111 112234455555566655542222 2335788889999999999999999998
Q ss_pred HhccccCC---hhhHHHHHHHHHhcCChhHHHHHHHHHHhCCC-----------Ccc------HHHHHHHHHHHHhcCCh
Q 044770 296 QSVKQLKA---TEQYNSVISVYCKNGFIDKASGLLKEMSMNGC-----------KPN------AITYRHLALGCFKSNLV 355 (464)
Q Consensus 296 ~~~~~~~~---~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~-----------~p~------~~~~~~ll~~~~~~~~~ 355 (464)
.+...+.- ..+|......-.++.+++.|+.+++......- ++. ...|...+..-...|-+
T Consensus 414 ~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtf 493 (835)
T KOG2047|consen 414 TKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTF 493 (835)
T ss_pred hcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccH
Confidence 87443321 34566666666778889999999888754211 111 12344444444556777
Q ss_pred HHHHHHHHHhHHHHhhhhhcCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCcHH-HHHHHHHHHHHc--CC-
Q 044770 356 EEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTF-VYNTLIKAYVKA--KI- 431 (464)
Q Consensus 356 ~~a~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~-~~~~li~~~~~~--g~- 431 (464)
+....+++.++++ .-..|-... .....+-...-++++.+++++=...=-.|++. .|++.+.-+.+. |.
T Consensus 494 estk~vYdriidL------riaTPqii~--NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~k 565 (835)
T KOG2047|consen 494 ESTKAVYDRIIDL------RIATPQIII--NYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTK 565 (835)
T ss_pred HHHHHHHHHHHHH------hcCCHHHHH--HHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCC
Confidence 7777888887543 122332221 11112233444666666665444332245555 677666666553 22
Q ss_pred --ChhHHHHHHHhCCCCCC
Q 044770 432 --NDPNLLRRMILGGARPD 448 (464)
Q Consensus 432 --~a~~~~~~m~~~~~~p~ 448 (464)
.|..+|++..+ |.+|.
T Consensus 566 lEraRdLFEqaL~-~Cpp~ 583 (835)
T KOG2047|consen 566 LERARDLFEQALD-GCPPE 583 (835)
T ss_pred HHHHHHHHHHHHh-cCCHH
Confidence 16677777766 55553
No 66
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.39 E-value=2.2e-10 Score=97.52 Aligned_cols=197 Identities=11% Similarity=-0.028 Sum_probs=83.3
Q ss_pred hHHHHHHHhcCCCCcccHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCcHhHHHHHHHHHH
Q 044770 132 VFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHA 211 (464)
Q Consensus 132 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~ 211 (464)
.+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|.+.+++..+.. +.+...+..+...+.
T Consensus 33 ~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~ 110 (234)
T TIGR02521 33 IRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTFLC 110 (234)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHH
Confidence 33344444444444444444444444332 2223334444444444444444444444444332 112233334444444
Q ss_pred hcChhhHHHHHHHHHHhccC-CCChhhHHHHHHHHHhhcChhhHHHHHHHhccCCCCchhhHHHHHHHhhccCChHHHHH
Q 044770 212 VARLYTVAETYVEALEKSMT-GNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEE 290 (464)
Q Consensus 212 ~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 290 (464)
..|++++|...+++...... +.....+..+..++...|+.++|...++......+.+...+..+...+...|++++|..
T Consensus 111 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 190 (234)
T TIGR02521 111 QQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDARA 190 (234)
T ss_pred HcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHHHH
Confidence 44444444444444433211 11122333344444444444444444444444333333334444444444555555555
Q ss_pred HHHHHHhccccCChhhHHHHHHHHHhcCChhHHHHHHHHHH
Q 044770 291 LWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMS 331 (464)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 331 (464)
.+++..+. .+.+...+..+...+...|+.++|..+.+.+.
T Consensus 191 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 230 (234)
T TIGR02521 191 YLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQ 230 (234)
T ss_pred HHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 55444442 22233334444444444455555554444443
No 67
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.35 E-value=2.4e-09 Score=98.98 Aligned_cols=288 Identities=15% Similarity=0.126 Sum_probs=161.2
Q ss_pred HHhhCcHHHHHHHHHHHHHcCCCCchhhHHHHHHHhcCCCCcccHHHHHHHHHhCCCCCChhhHHHHHHHHHcc-----C
Q 044770 105 CLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEAND-----H 179 (464)
Q Consensus 105 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----~ 179 (464)
+...|++++|++.++.-... +.............+.+.|+.++|..++..+++.+ +.|..-|..+..+..-. .
T Consensus 14 l~e~g~~~~AL~~L~~~~~~-I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN-Pdn~~Yy~~L~~~~g~~~~~~~~ 91 (517)
T PF12569_consen 14 LEEAGDYEEALEHLEKNEKQ-ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN-PDNYDYYRGLEEALGLQLQLSDE 91 (517)
T ss_pred HHHCCCHHHHHHHHHhhhhh-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHhhhcccccc
Confidence 34455555555555443332 22223334444455555555555555555555543 22233333333333111 1
Q ss_pred ChhHHHHHHHHHHhCCCCCcHhHHHHHHHHHHhcChh-hHHHHHHHHHHhccCCCChhhHHHHHHHHHhhcChhhHHHHH
Q 044770 180 NIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLY-TVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIW 258 (464)
Q Consensus 180 ~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 258 (464)
+.+....+|+++... -|.......+.-.+.....+ ..+..++..+...|+| .+|+.+-..|.......-..+++
T Consensus 92 ~~~~~~~~y~~l~~~--yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvP---slF~~lk~Ly~d~~K~~~i~~l~ 166 (517)
T PF12569_consen 92 DVEKLLELYDELAEK--YPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVP---SLFSNLKPLYKDPEKAAIIESLV 166 (517)
T ss_pred cHHHHHHHHHHHHHh--CccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCc---hHHHHHHHHHcChhHHHHHHHHH
Confidence 344445555555443 23222222222122221222 2334444445555543 34444444444433333333333
Q ss_pred HHhcc---------------CCCCchh--hHHHHHHHhhccCChHHHHHHHHHHHhccccCChhhHHHHHHHHHhcCChh
Q 044770 259 ATVQE---------------LPNVRSK--SYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFID 321 (464)
Q Consensus 259 ~~~~~---------------~~~~~~~--~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 321 (464)
..... ..++... ++.-+...|...|++++|+++++...++. +..+..|..-...+-+.|++.
T Consensus 167 ~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~ht-Pt~~ely~~KarilKh~G~~~ 245 (517)
T PF12569_consen 167 EEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHT-PTLVELYMTKARILKHAGDLK 245 (517)
T ss_pred HHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHCCCHH
Confidence 33221 1122222 34556777888999999999999999854 224667888888999999999
Q ss_pred HHHHHHHHHHhCCCCccHHHHHHHHHHHHhcCChHHHHHHHHHhHHHHhhhhhcCCCCcHHH--------HHHHHHHHHh
Q 044770 322 KASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLET--------TLSIIEIFAE 393 (464)
Q Consensus 322 ~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~p~~~~--------~~~li~~~~~ 393 (464)
+|.+.++..+..... |...-+-....+.+.|++++|..++... ...+..|.... ......+|.+
T Consensus 246 ~Aa~~~~~Ar~LD~~-DRyiNsK~aKy~LRa~~~e~A~~~~~~F-------tr~~~~~~~~L~~mQc~Wf~~e~a~a~~r 317 (517)
T PF12569_consen 246 EAAEAMDEARELDLA-DRYINSKCAKYLLRAGRIEEAEKTASLF-------TREDVDPLSNLNDMQCMWFETECAEAYLR 317 (517)
T ss_pred HHHHHHHHHHhCChh-hHHHHHHHHHHHHHCCCHHHHHHHHHhh-------cCCCCCcccCHHHHHHHHHHHHHHHHHHH
Confidence 999999999885433 6666667777889999999999999888 33443442211 2356778899
Q ss_pred cCChhhHHHHHHHHH
Q 044770 394 KGDVGNAENLFEELK 408 (464)
Q Consensus 394 ~g~~~~A~~~~~~m~ 408 (464)
.|++..|++-|....
T Consensus 318 ~~~~~~ALk~~~~v~ 332 (517)
T PF12569_consen 318 QGDYGLALKRFHAVL 332 (517)
T ss_pred HhhHHHHHHHHHHHH
Confidence 999999887766554
No 68
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.34 E-value=5.1e-09 Score=96.91 Aligned_cols=296 Identities=13% Similarity=0.015 Sum_probs=153.3
Q ss_pred hHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCCchhHHHHHHHHHhhcChHHHHHHhhhcCCCCCchhHHH-HHHHHHHh
Q 044770 29 IFHSINRLRKLQLNKRALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQGEKLFCCIPKDYQNELLYN-NLVIACLD 107 (464)
Q Consensus 29 ~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~-~li~~~~~ 107 (464)
+......+...|++++|++.++.-.+. +.............+.+.|+.++|..++..+....|+...|- .+..+..-
T Consensus 7 lLY~~~il~e~g~~~~AL~~L~~~~~~--I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g~ 84 (517)
T PF12569_consen 7 LLYKNSILEEAGDYEEALEHLEKNEKQ--ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEALGL 84 (517)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHhhhhh--CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHhh
Confidence 334455666778888888887765441 333344556666777788888888888887777755544443 34343311
Q ss_pred -----hCcHHHHHHHHHHHHHcCCCCchhhHHHHHHHhcCCCCc-ccHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCh
Q 044770 108 -----KGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRR-KTIPNILRQMKADKVAPHVSTFHILMKIEANDHNI 181 (464)
Q Consensus 108 -----~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 181 (464)
..+.+...++|+++...- |.......+.-.+.....+ ..+..++..+...|+|+ +|+.+-..|....+.
T Consensus 85 ~~~~~~~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPs---lF~~lk~Ly~d~~K~ 159 (517)
T PF12569_consen 85 QLQLSDEDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPS---LFSNLKPLYKDPEKA 159 (517)
T ss_pred hcccccccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCch---HHHHHHHHHcChhHH
Confidence 124566677777776542 4444443333233332222 23344445555556422 344555555544444
Q ss_pred hHHHHHHHHHHhC----C----------CCCcH--hHHHHHHHHHHhcChhhHHHHHHHHHHhccCCCChhhHHHHHHHH
Q 044770 182 EGLMKVYSDMKRS----E----------VEPNE--VSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILY 245 (464)
Q Consensus 182 ~~a~~~~~~m~~~----~----------~~p~~--~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 245 (464)
+-..+++...... + -.|+. .++..+.+.|...|++++|+.++++...+. +..+..|..-.+.+
T Consensus 160 ~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~ht-Pt~~ely~~Karil 238 (517)
T PF12569_consen 160 AIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHT-PTLVELYMTKARIL 238 (517)
T ss_pred HHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHH
Confidence 4444555444321 1 12222 233444555666666666666666666542 22244555555555
Q ss_pred HhhcChhhHHHHHHHhccCCCCchhhHHHHHHHhhccCChHHHHHHHHHHHhccccCChhh------H--HHHHHHHHhc
Q 044770 246 GYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQ------Y--NSVISVYCKN 317 (464)
Q Consensus 246 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~------~--~~li~~~~~~ 317 (464)
-..|++.+|.+..+........|-..-+-.+..+.+.|++++|.+++......+..|-... | .....+|.+.
T Consensus 239 Kh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~ 318 (517)
T PF12569_consen 239 KHAGDLKEAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQ 318 (517)
T ss_pred HHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHH
Confidence 5566666666655555555555544444555555555555555555555554332221111 1 2233445555
Q ss_pred CChhHHHHHHHHHHh
Q 044770 318 GFIDKASGLLKEMSM 332 (464)
Q Consensus 318 ~~~~~a~~~~~~m~~ 332 (464)
|++..|+.-|....+
T Consensus 319 ~~~~~ALk~~~~v~k 333 (517)
T PF12569_consen 319 GDYGLALKRFHAVLK 333 (517)
T ss_pred hhHHHHHHHHHHHHH
Confidence 555555555554443
No 69
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.32 E-value=2.1e-08 Score=84.29 Aligned_cols=391 Identities=11% Similarity=0.001 Sum_probs=214.8
Q ss_pred HHHHHHhhcchHHHHHHHHHHHHcCCCCCCchhHHHHHHHHHhhcChHHHHHHhhhcCCCCCchhHHHHHHHHHHhhCcH
Q 044770 32 SINRLRKLQLNKRALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQGEKLFCCIPKDYQNELLYNNLVIACLDKGVI 111 (464)
Q Consensus 32 ~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~li~~~~~~~~~ 111 (464)
+...+.+.|++++|+..++.+.... .|+...+..|.-++.-.|.+.+|.++-...++ ++..-..+.....+.++-
T Consensus 63 ia~C~fhLgdY~~Al~~Y~~~~~~~--~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~k---~pL~~RLlfhlahklndE 137 (557)
T KOG3785|consen 63 IAHCYFHLGDYEEALNVYTFLMNKD--DAPAELGVNLACCKFYLGQYIEAKSIAEKAPK---TPLCIRLLFHLAHKLNDE 137 (557)
T ss_pred HHHHHHhhccHHHHHHHHHHHhccC--CCCcccchhHHHHHHHHHHHHHHHHHHhhCCC---ChHHHHHHHHHHHHhCcH
Confidence 3444556777888888777776632 45666666666666667777777777776654 333333344444455555
Q ss_pred HHHHHHHHHHHHcCCCCchhhHHHHHHHhcCCCCcccHHHHHHHHHhCCCCCChhhHHHHH-HHHHccCChhHHHHHHHH
Q 044770 112 KLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILM-KIEANDHNIEGLMKVYSD 190 (464)
Q Consensus 112 ~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~~~~a~~~~~~ 190 (464)
++-..+...+.+. ..---+|.+.....-.+++|++++.+.... .|+-...|.-+ -+|.+..-++-+.++++-
T Consensus 138 k~~~~fh~~LqD~-----~EdqLSLAsvhYmR~HYQeAIdvYkrvL~d--n~ey~alNVy~ALCyyKlDYydvsqevl~v 210 (557)
T KOG3785|consen 138 KRILTFHSSLQDT-----LEDQLSLASVHYMRMHYQEAIDVYKRVLQD--NPEYIALNVYMALCYYKLDYYDVSQEVLKV 210 (557)
T ss_pred HHHHHHHHHHhhh-----HHHHHhHHHHHHHHHHHHHHHHHHHHHHhc--ChhhhhhHHHHHHHHHhcchhhhHHHHHHH
Confidence 5555444443321 111122222222233467788888877754 34544444333 345666667777777776
Q ss_pred HHhCCCCCcHh-HHHHHHHHHHh--cChhhHHH------------HHHHHHHhcc------------CCC-----ChhhH
Q 044770 191 MKRSEVEPNEV-SYCILATAHAV--ARLYTVAE------------TYVEALEKSM------------TGN-----NWSTL 238 (464)
Q Consensus 191 m~~~~~~p~~~-~~~~li~~~~~--~~~~~~a~------------~~~~~~~~~~------------~~~-----~~~~~ 238 (464)
..+. .||.. ..|.......+ .|+..+.+ ...+.+.+++ +-| -+..-
T Consensus 211 YL~q--~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~~IPEAR 288 (557)
T KOG3785|consen 211 YLRQ--FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLMKHIPEAR 288 (557)
T ss_pred HHHh--CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHHcCeEEEeCCccHHHhchHHHhhChHhh
Confidence 6554 34432 22322221111 11111100 0111111111 001 01222
Q ss_pred HHHHHHHHhhcChhhHHHHHHHhccCCCCchh-------hHHHHHHHhhccCChHHHHHHHHHHHhccccCCh-hhHHHH
Q 044770 239 DVLIILYGYLAKGKDLERIWATVQELPNVRSK-------SYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKAT-EQYNSV 310 (464)
Q Consensus 239 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~l 310 (464)
..++-.|.+.++..+|..+.+.+.. .++. ++.++..-........-|.+.|+..-+.+...|+ ..-.++
T Consensus 289 lNL~iYyL~q~dVqeA~~L~Kdl~P---ttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsm 365 (557)
T KOG3785|consen 289 LNLIIYYLNQNDVQEAISLCKDLDP---TTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSM 365 (557)
T ss_pred hhheeeecccccHHHHHHHHhhcCC---CChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHH
Confidence 3445556777888877777665533 2222 2223333333344556677777766655443332 234556
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCccHHHHHHHHHHHHhcCChHHHHHHHHHhHHHHhhhhhcCCCCcHHHHHHHHHH
Q 044770 311 ISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEI 390 (464)
Q Consensus 311 i~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~ 390 (464)
.+.+.-..++++++..++....--..-|.. --.+.++.+..|.+.+|.++|-.+ ....++....-...|.++
T Consensus 366 As~fFL~~qFddVl~YlnSi~sYF~NdD~F-n~N~AQAk~atgny~eaEelf~~i-------s~~~ikn~~~Y~s~LArC 437 (557)
T KOG3785|consen 366 ASYFFLSFQFDDVLTYLNSIESYFTNDDDF-NLNLAQAKLATGNYVEAEELFIRI-------SGPEIKNKILYKSMLARC 437 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCcchh-hhHHHHHHHHhcChHHHHHHHhhh-------cChhhhhhHHHHHHHHHH
Confidence 666677778888888888877643332333 335678888889999999998877 344444444334567788
Q ss_pred HHhcCChhhHHHHHHHHHHcCCCCcHH-HHHHHHHHHHHcCCC--hhHHHHHHHhCCCCCCHHHH
Q 044770 391 FAEKGDVGNAENLFEELKKANYTKYTF-VYNTLIKAYVKAKIN--DPNLLRRMILGGARPDAETY 452 (464)
Q Consensus 391 ~~~~g~~~~A~~~~~~m~~~~~~p~~~-~~~~li~~~~~~g~~--a~~~~~~m~~~~~~p~~~t~ 452 (464)
|.++|.++.|++++-.+.. +.+.. ..-.+.+-|.+.++. |-+.|+.+... .|++..|
T Consensus 438 yi~nkkP~lAW~~~lk~~t---~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~l--DP~pEnW 497 (557)
T KOG3785|consen 438 YIRNKKPQLAWDMMLKTNT---PSERFSLLQLIANDCYKANEFYYAAKAFDELEIL--DPTPENW 497 (557)
T ss_pred HHhcCCchHHHHHHHhcCC---chhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHcc--CCCcccc
Confidence 8899999998888544433 22333 344455677777774 77777777664 4555444
No 70
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.31 E-value=5.7e-09 Score=95.40 Aligned_cols=256 Identities=16% Similarity=0.107 Sum_probs=174.2
Q ss_pred HhHHHHHHHHHHhcChhhHHHHHHHHHHhc-----c-CCCChh-hHHHHHHHHHhhcChhhHHHHHHHhcc--------C
Q 044770 200 EVSYCILATAHAVARLYTVAETYVEALEKS-----M-TGNNWS-TLDVLIILYGYLAKGKDLERIWATVQE--------L 264 (464)
Q Consensus 200 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-----~-~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~--------~ 264 (464)
..+...+...|...|+++.|+.+++...+. | ..|... ..+.+...|...+++++|..+|+.+.. .
T Consensus 199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~ 278 (508)
T KOG1840|consen 199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGED 278 (508)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC
Confidence 345555777778888888888777776543 1 112222 233466677778888888877777654 1
Q ss_pred CCCchhhHHHHHHHhhccCChHHHHHHHHHHHhc-----cc-cCC-hhhHHHHHHHHHhcCChhHHHHHHHHHHhC---C
Q 044770 265 PNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSV-----KQ-LKA-TEQYNSVISVYCKNGFIDKASGLLKEMSMN---G 334 (464)
Q Consensus 265 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~~-~~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~---g 334 (464)
.+....+++.|..+|.+.|++++|...++...+- +. .|. ...++.+...++..+++++|..+++...+. -
T Consensus 279 h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~ 358 (508)
T KOG1840|consen 279 HPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDA 358 (508)
T ss_pred CHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhh
Confidence 2223346777888899999999888888765531 11 112 224677788889999999999999876542 1
Q ss_pred CCcc----HHHHHHHHHHHHhcCChHHHHHHHHHhHHHHhhhhhcCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHHH-
Q 044770 335 CKPN----AITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKK- 409 (464)
Q Consensus 335 ~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~- 409 (464)
+.++ ..+++.+...|...|++++|.++++.++............-....++.|...|.+.++..+|.++|.+...
T Consensus 359 ~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i 438 (508)
T KOG1840|consen 359 PGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDI 438 (508)
T ss_pred ccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHH
Confidence 2222 36789999999999999999999999988765433332333455678999999999999999999987653
Q ss_pred ---cCC-CCcHH-HHHHHHHHHHHcCCC--hhHHHHHHHh------CCCCCCHHHHHHH
Q 044770 410 ---ANY-TKYTF-VYNTLIKAYVKAKIN--DPNLLRRMIL------GGARPDAETYSLL 455 (464)
Q Consensus 410 ---~~~-~p~~~-~~~~li~~~~~~g~~--a~~~~~~m~~------~~~~p~~~t~~~L 455 (464)
.|. .|++. +|..|...|.+.|+. |.++.+.... .+..|+.......
T Consensus 439 ~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 497 (508)
T KOG1840|consen 439 MKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLNAREQRLGTASPTVEDEKLR 497 (508)
T ss_pred HHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHcCCCCCcchhHHHHh
Confidence 332 23443 899999999999984 6665554431 1344555555433
No 71
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.30 E-value=1.6e-09 Score=98.90 Aligned_cols=243 Identities=17% Similarity=0.094 Sum_probs=179.1
Q ss_pred hhhHHHHHHHHHccCChhHHHHHHHHHHhC-----C-CCCcHhH-HHHHHHHHHhcChhhHHHHHHHHHHhc---cCCC-
Q 044770 165 VSTFHILMKIEANDHNIEGLMKVYSDMKRS-----E-VEPNEVS-YCILATAHAVARLYTVAETYVEALEKS---MTGN- 233 (464)
Q Consensus 165 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~-----~-~~p~~~~-~~~li~~~~~~~~~~~a~~~~~~~~~~---~~~~- 233 (464)
..+...+...|...|+++.|..+++...+. | ..|...+ .+.+...|...+++++|..+|+++... ...+
T Consensus 199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~ 278 (508)
T KOG1840|consen 199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGED 278 (508)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC
Confidence 456666889999999999999999877543 2 2344333 344667788899999999999988543 1112
Q ss_pred ---ChhhHHHHHHHHHhhcChhhHHHHHHHhcc--------CCCCchhhHHHHHHHhhccCChHHHHHHHHHHHhcc---
Q 044770 234 ---NWSTLDVLIILYGYLAKGKDLERIWATVQE--------LPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVK--- 299 (464)
Q Consensus 234 ---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--------~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--- 299 (464)
-..+++.|..+|.+.|++++|...++...+ .++.-...++.+...++..+++++|..++....+.-
T Consensus 279 h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~ 358 (508)
T KOG1840|consen 279 HPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDA 358 (508)
T ss_pred CHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhh
Confidence 235677777889999999988887776544 111122346777888899999999999988665421
Q ss_pred ccCC----hhhHHHHHHHHHhcCChhHHHHHHHHHHhC----C--CCc-cHHHHHHHHHHHHhcCChHHHHHHHHHhHHH
Q 044770 300 QLKA----TEQYNSVISVYCKNGFIDKASGLLKEMSMN----G--CKP-NAITYRHLALGCFKSNLVEEGFKALELGMKL 368 (464)
Q Consensus 300 ~~~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----g--~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 368 (464)
+.++ ..+++.|...|...|++++|.+++++.+.. + ..+ ....++.+...|.+.+++++|.++|......
T Consensus 359 ~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i 438 (508)
T KOG1840|consen 359 PGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDI 438 (508)
T ss_pred ccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHH
Confidence 1122 357899999999999999999999988652 1 122 2456788889999999999999999998776
Q ss_pred HhhhhhcCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHH
Q 044770 369 ITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELK 408 (464)
Q Consensus 369 ~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 408 (464)
. .....+.+-...+|..|...|.+.|++++|.++.+...
T Consensus 439 ~-~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 439 M-KLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred H-HHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 6 32333333455779999999999999999999988765
No 72
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.26 E-value=2.6e-07 Score=77.94 Aligned_cols=379 Identities=11% Similarity=0.098 Sum_probs=227.7
Q ss_pred HHHHHhhcchHHHHHHHHHHHHcCCCCCCchhHHHHHHHHHhhcChHHHHHHhhhcCCC-CCchhHHHHHHHHHHhhCcH
Q 044770 33 INRLRKLQLNKRALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQGEKLFCCIPKD-YQNELLYNNLVIACLDKGVI 111 (464)
Q Consensus 33 l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~li~~~~~~~~~ 111 (464)
+.-+...+++..|+.+++.-.. .+-.-...+-.-+..++...|++++|...+..+... .++...+-.|.-++.-.|.+
T Consensus 29 Ledfls~rDytGAislLefk~~-~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y 107 (557)
T KOG3785|consen 29 LEDFLSNRDYTGAISLLEFKLN-LDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQY 107 (557)
T ss_pred HHHHHhcccchhHHHHHHHhhc-cchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHH
Confidence 5666778899999999988764 221112223334455677899999999999987766 66777888887777778999
Q ss_pred HHHHHHHHHHHHcCCCCchhhHHHHHHHhcCCCCcccHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhHHHHHHHHH
Q 044770 112 KLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDM 191 (464)
Q Consensus 112 ~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m 191 (464)
.+|..+-.... .+.-.-..++....+.++-++-..+.+.+.+. ..---+|....-..-.+.+|.++|...
T Consensus 108 ~eA~~~~~ka~-----k~pL~~RLlfhlahklndEk~~~~fh~~LqD~-----~EdqLSLAsvhYmR~HYQeAIdvYkrv 177 (557)
T KOG3785|consen 108 IEAKSIAEKAP-----KTPLCIRLLFHLAHKLNDEKRILTFHSSLQDT-----LEDQLSLASVHYMRMHYQEAIDVYKRV 177 (557)
T ss_pred HHHHHHHhhCC-----CChHHHHHHHHHHHHhCcHHHHHHHHHHHhhh-----HHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 99988765432 23333445556666777777666666665432 122223444444556789999999999
Q ss_pred HhCCCCCcHhHHHHHH-HHHHhcChhhHHHHHHHHHHhccCCCChhhHHHHHHHHHhhcChhhHHHHHHHhccCCC----
Q 044770 192 KRSEVEPNEVSYCILA-TAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPN---- 266 (464)
Q Consensus 192 ~~~~~~p~~~~~~~li-~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---- 266 (464)
... .|+-...|.-+ -+|.+..-++-+.++++..... ++.++...+.......+.-....|++-.+.+..+..
T Consensus 178 L~d--n~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q-~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~ 254 (557)
T KOG3785|consen 178 LQD--NPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ-FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYP 254 (557)
T ss_pred Hhc--ChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh-CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccch
Confidence 876 45666666544 4567888888888888877665 555555555555444443333333322222221110
Q ss_pred ----------------------------CchhhHHHHHHHhhccCChHHHHHHHHHHHhccccCChhhHHHHHHH--HHh
Q 044770 267 ----------------------------VRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISV--YCK 316 (464)
Q Consensus 267 ----------------------------~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~--~~~ 316 (464)
.-+..-..|+--|.+.+++.+|..+.+++.- .++ |.-++.+ ++.
T Consensus 255 f~~~l~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kdl~P----ttP--~EyilKgvv~aa 328 (557)
T KOG3785|consen 255 FIEYLCRHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKDLDP----TTP--YEYILKGVVFAA 328 (557)
T ss_pred hHHHHHHcCeEEEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhhcCC----CCh--HHHHHHHHHHHH
Confidence 0111222345567788888888877665442 122 2223332 233
Q ss_pred cCC-------hhHHHHHHHHHHhCCCCccHH-HHHHHHHHHHhcCChHHHHHHHHHhHHHHhhhhhcCCCCcHHHHHHHH
Q 044770 317 NGF-------IDKASGLLKEMSMNGCKPNAI-TYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSII 388 (464)
Q Consensus 317 ~~~-------~~~a~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~p~~~~~~~li 388 (464)
.|+ ..-|.+.|+-.-+.+..-|.. --.++..++.-..++++.+.++..+ +..-...|...| .+.
T Consensus 329 lGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi-------~sYF~NdD~Fn~-N~A 400 (557)
T KOG3785|consen 329 LGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSI-------ESYFTNDDDFNL-NLA 400 (557)
T ss_pred hhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHH-------HHHhcCcchhhh-HHH
Confidence 332 334555555444444332221 2234445556667788888888777 333334444433 577
Q ss_pred HHHHhcCChhhHHHHHHHHHHcCCCCcHHHHHHH-HHHHHHcCCC--hhHHHHHH
Q 044770 389 EIFAEKGDVGNAENLFEELKKANYTKYTFVYNTL-IKAYVKAKIN--DPNLLRRM 440 (464)
Q Consensus 389 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l-i~~~~~~g~~--a~~~~~~m 440 (464)
.+++..|++.+|+++|-++....++ |..+|..+ .++|.+.+++ |++++-.|
T Consensus 401 QAk~atgny~eaEelf~~is~~~ik-n~~~Y~s~LArCyi~nkkP~lAW~~~lk~ 454 (557)
T KOG3785|consen 401 QAKLATGNYVEAEELFIRISGPEIK-NKILYKSMLARCYIRNKKPQLAWDMMLKT 454 (557)
T ss_pred HHHHHhcChHHHHHHHhhhcChhhh-hhHHHHHHHHHHHHhcCCchHHHHHHHhc
Confidence 8899999999999999777665443 45566654 4566666665 55544333
No 73
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.26 E-value=3.7e-08 Score=84.56 Aligned_cols=311 Identities=9% Similarity=-0.044 Sum_probs=213.9
Q ss_pred cCccChhchHHHHHHHHh--hcchHHHHHHHHHHHHcCCCCCCchhHHHHHHHHHhhcChHHHHHHhhhcCCCCC-chhH
Q 044770 21 GFPVHRGEIFHSINRLRK--LQLNKRALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQGEKLFCCIPKDYQ-NELL 97 (464)
Q Consensus 21 g~~~~~~~~~~~l~~~~~--~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~ 97 (464)
..+++-+....-+.+++. .++...|...+-.+....-++.+......+...+...|+.++|...|+......| +...
T Consensus 189 ~~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~ 268 (564)
T KOG1174|consen 189 TVPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEA 268 (564)
T ss_pred ecCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhh
Confidence 344444444444444443 2333444444444444344667788888888999999999999999998877644 3333
Q ss_pred HHHHHHHHHhhCcHHHHHHHHHHHHHcCCCCchhhHHHHHHHhcCCCCcccHHHHHHHHHhCCCCCChhhHHHHHHHHHc
Q 044770 98 YNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEAN 177 (464)
Q Consensus 98 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 177 (464)
.....-.+.+.|+.+....+...+.... .-+...|-.-........++..|+.+-+..++.. +.+...|-.-...+..
T Consensus 269 MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~ 346 (564)
T KOG1174|consen 269 MDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIA 346 (564)
T ss_pred HHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHh
Confidence 3334444567788888888877776642 2334444444445556677888888888887654 4455566555677888
Q ss_pred cCChhHHHHHHHHHHhCCCCCcHhHHHHHHHHHHhcChhhHHHHHHHHHHhccCCCChhhHHHHH-HHHHh-hcChhhHH
Q 044770 178 DHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLI-ILYGY-LAKGKDLE 255 (464)
Q Consensus 178 ~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~-~~~~~-~~~~~~a~ 255 (464)
.+++++|.-.|+...... +-+...|.-++.+|...|.+.+|...-....+. .+.+..+...+. ..+.. ..--++|.
T Consensus 347 ~~R~~~A~IaFR~Aq~La-p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAK 424 (564)
T KOG1174|consen 347 LERHTQAVIAFRTAQMLA-PYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAK 424 (564)
T ss_pred ccchHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHH
Confidence 899999999998876542 346788999999999999999888776665443 334445554442 23322 22357788
Q ss_pred HHHHHhccCCCCchhhHHHHHHHhhccCChHHHHHHHHHHHhccccCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 044770 256 RIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGC 335 (464)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~ 335 (464)
++++......+......+.+...+...|..+.+..+++.... ..||....+.+.+.+...+.+.+|++.|..... +
T Consensus 425 kf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~--~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr--~ 500 (564)
T KOG1174|consen 425 KFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLI--IFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALR--Q 500 (564)
T ss_pred HHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHh--hccccHHHHHHHHHHHHhhhHHHHHHHHHHHHh--c
Confidence 888887777777777788888888889999999999988776 447888889999999989999999999888877 4
Q ss_pred CccH
Q 044770 336 KPNA 339 (464)
Q Consensus 336 ~p~~ 339 (464)
.|+.
T Consensus 501 dP~~ 504 (564)
T KOG1174|consen 501 DPKS 504 (564)
T ss_pred Cccc
Confidence 4543
No 74
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.22 E-value=2e-06 Score=78.47 Aligned_cols=340 Identities=10% Similarity=0.082 Sum_probs=172.6
Q ss_pred HHHHHHHHHHhhCcHHHHHHHHHHHHHcCCCCchhhHHHHHHHhcCCCC----------------------cccHHHHHH
Q 044770 97 LYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGR----------------------RKTIPNILR 154 (464)
Q Consensus 97 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~----------------------~~~a~~~~~ 154 (464)
.|++|.+-|.+.|.+++|.++|++.++. ..+..-|..+.+.|+.... ++-...-|+
T Consensus 250 Lw~SLAdYYIr~g~~ekarDvyeeai~~--v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e 327 (835)
T KOG2047|consen 250 LWCSLADYYIRSGLFEKARDVYEEAIQT--VMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFE 327 (835)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHh--heehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHH
Confidence 4666666677777777777777666653 2344455555555543111 111122222
Q ss_pred HHHhCC-----------CCCChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCc------HhHHHHHHHHHHhcChhh
Q 044770 155 QMKADK-----------VAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPN------EVSYCILATAHAVARLYT 217 (464)
Q Consensus 155 ~~~~~~-----------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~------~~~~~~li~~~~~~~~~~ 217 (464)
.+.+.+ -+.++..|..-.. ...|+..+-...|.+..+. +.|- ...|..+...|-..|+.+
T Consensus 328 ~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~ 404 (835)
T KOG2047|consen 328 SLMNRRPLLLNSVLLRQNPHNVEEWHKRVK--LYEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLD 404 (835)
T ss_pred HHHhccchHHHHHHHhcCCccHHHHHhhhh--hhcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHH
Confidence 222211 0112222222222 2244555555666665543 1221 234566666666777777
Q ss_pred HHHHHHHHHHhccCCCC---hhhHHHHHHHHHhhcChhhHHHHHHHhccCCCCc------------------hhhHHHHH
Q 044770 218 VAETYVEALEKSMTGNN---WSTLDVLIILYGYLAKGKDLERIWATVQELPNVR------------------SKSYVLAI 276 (464)
Q Consensus 218 ~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~------------------~~~~~~l~ 276 (464)
.|..+|++..+...+.- ..+|..-...-.+..+.+.|.++.+....-|... ...|.-.+
T Consensus 405 ~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~ 484 (835)
T KOG2047|consen 405 DARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYA 484 (835)
T ss_pred HHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHH
Confidence 77777777655432221 2344444444455556666666666554322221 11233344
Q ss_pred HHhhccCChHHHHHHHHHHHhccccCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCccH-HHHHHHHHHHHh---c
Q 044770 277 EAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNA-ITYRHLALGCFK---S 352 (464)
Q Consensus 277 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~-~~~~~ll~~~~~---~ 352 (464)
+.--..|-++....+++++.+..+. ++..--....-+-.+.-++++.++|++-+..=..|+. ..|++.+.-+.+ .
T Consensus 485 DleEs~gtfestk~vYdriidLria-TPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg 563 (835)
T KOG2047|consen 485 DLEESLGTFESTKAVYDRIIDLRIA-TPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGG 563 (835)
T ss_pred HHHHHhccHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcC
Confidence 4444566677777777777764433 2222222222233445566777777665543233443 345555554433 2
Q ss_pred CChHHHHHHHHHhHHHHhhhhhcCCCCcHHH--HHHHHHHHHhcCChhhHHHHHHHHHHcCCCCcHH--HHHHHHHHHHH
Q 044770 353 NLVEEGFKALELGMKLITTKKVRSSTPWLET--TLSIIEIFAEKGDVGNAENLFEELKKANYTKYTF--VYNTLIKAYVK 428 (464)
Q Consensus 353 ~~~~~a~~~~~~~~~~~~~~~~~~~~p~~~~--~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~--~~~~li~~~~~ 428 (464)
..++.|..+|++++ + +++|...- |-.....--+.|-...|+.++++... ++++... .||..|.--..
T Consensus 564 ~klEraRdLFEqaL-------~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~-~v~~a~~l~myni~I~kaae 634 (835)
T KOG2047|consen 564 TKLERARDLFEQAL-------D-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATS-AVKEAQRLDMYNIYIKKAAE 634 (835)
T ss_pred CCHHHHHHHHHHHH-------h-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHH
Confidence 46788888888884 2 55554322 11112222345777888888888654 3444333 77777765444
Q ss_pred c-CCC-hhHHHHHHHhCCCCCCHHHHH
Q 044770 429 A-KIN-DPNLLRRMILGGARPDAETYS 453 (464)
Q Consensus 429 ~-g~~-a~~~~~~m~~~~~~p~~~t~~ 453 (464)
. |-. ...+|++.++. -||...-.
T Consensus 635 ~yGv~~TR~iYekaIe~--Lp~~~~r~ 659 (835)
T KOG2047|consen 635 IYGVPRTREIYEKAIES--LPDSKARE 659 (835)
T ss_pred HhCCcccHHHHHHHHHh--CChHHHHH
Confidence 3 432 45667766653 46655443
No 75
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.21 E-value=2.2e-06 Score=77.44 Aligned_cols=162 Identities=17% Similarity=0.148 Sum_probs=105.7
Q ss_pred hHHHHHHHhhc--cCChHHHHHHHHHHHhccccCChhhHHHHHHHHHhcCChhHHHHHHH--------HHHhCCCCccHH
Q 044770 271 SYVLAIEAFGR--IAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLK--------EMSMNGCKPNAI 340 (464)
Q Consensus 271 ~~~~l~~~~~~--~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~--------~m~~~g~~p~~~ 340 (464)
.+..++....+ ......+..++....+..........-.++......|+++.|++++. .+.+.+..|-.
T Consensus 341 ~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P~~- 419 (652)
T KOG2376|consen 341 LFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLPGT- 419 (652)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccChhH-
Confidence 34444444332 22456677777766663332234455666777888999999999999 55555555544
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHhHHHHhhhhhcCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCcHHHHH
Q 044770 341 TYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYN 420 (464)
Q Consensus 341 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~ 420 (464)
...+...+.+.++-+.|..++..+++-... ...+-.--..++.-+...-.+.|+.++|..+++++.+.+ ++|..+..
T Consensus 420 -V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~-~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n-~~d~~~l~ 496 (652)
T KOG2376|consen 420 -VGAIVALYYKIKDNDSASAVLDSAIKWWRK-QQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFN-PNDTDLLV 496 (652)
T ss_pred -HHHHHHHHHhccCCccHHHHHHHHHHHHHH-hcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhC-CchHHHHH
Confidence 455666677888888888888888654322 111111122334444555567899999999999999864 36788999
Q ss_pred HHHHHHHHcCCC-hhHH
Q 044770 421 TLIKAYVKAKIN-DPNL 436 (464)
Q Consensus 421 ~li~~~~~~g~~-a~~~ 436 (464)
.++.+|++..-+ |..+
T Consensus 497 ~lV~a~~~~d~eka~~l 513 (652)
T KOG2376|consen 497 QLVTAYARLDPEKAESL 513 (652)
T ss_pred HHHHHHHhcCHHHHHHH
Confidence 999999998743 4433
No 76
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.17 E-value=9.8e-07 Score=82.06 Aligned_cols=406 Identities=14% Similarity=0.039 Sum_probs=232.6
Q ss_pred HHHhhcCccChhchHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCCchhHHHHHHHHHhhcChHHHHHHhhhcCCCC--C
Q 044770 16 SWMREGFPVHRGEIFHSINRLRKLQLNKRALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQGEKLFCCIPKDY--Q 93 (464)
Q Consensus 16 ~~~~~g~~~~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--~ 93 (464)
.+....+..++..|..+.-++...|+++.+.+.|++... . .-...+.|..+...+...|.-..|..+++.-.... |
T Consensus 313 k~r~~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~-~-~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~p 390 (799)
T KOG4162|consen 313 KLRLKKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALP-F-SFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQP 390 (799)
T ss_pred HHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhH-h-hhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCC
Confidence 344445556777777777788888888888888887765 2 23456677777777888888778888777655442 3
Q ss_pred -chhHHHHHHHHHHh-hCcHHHHHHHHHHHHH--cCC--CCchhhHHHHHHHhcCC----C-------CcccHHHHHHHH
Q 044770 94 -NELLYNNLVIACLD-KGVIKLSLEYMKKMRV--LGH--SISYLVFNRLIILNSSP----G-------RRKTIPNILRQM 156 (464)
Q Consensus 94 -~~~~~~~li~~~~~-~~~~~~a~~~~~~m~~--~~~--~~~~~~~~~l~~~~~~~----~-------~~~~a~~~~~~~ 156 (464)
+...+-..-..|.+ .+.++++++.-.+... .+. ......|..+.-+|... . ...++.+.+++.
T Consensus 391 s~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~a 470 (799)
T KOG4162|consen 391 SDISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEA 470 (799)
T ss_pred CcchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHH
Confidence 23333333333332 3555665555555444 111 11223333333333221 1 133556666666
Q ss_pred HhCC-CCCChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCcHhHHHHHHHHHHhcChhhHHHHHHHHHHhccCCCCh
Q 044770 157 KADK-VAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNW 235 (464)
Q Consensus 157 ~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 235 (464)
.+.+ -.|++..| +.--|+..++++.|.+...+..+-+-.-+...|..+.-.+...+++.+|+.+.+..... ...|-
T Consensus 471 v~~d~~dp~~if~--lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E-~~~N~ 547 (799)
T KOG4162|consen 471 VQFDPTDPLVIFY--LALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEE-FGDNH 547 (799)
T ss_pred HhcCCCCchHHHH--HHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHH-hhhhh
Confidence 6543 23333333 33336667788888888888777655567777887777777788888888887766443 11111
Q ss_pred hhHHHHHHHHHhhcChhhHHHHHHHh--------------------------cc---CCCCchhhHHHHHHHhhccC---
Q 044770 236 STLDVLIILYGYLAKGKDLERIWATV--------------------------QE---LPNVRSKSYVLAIEAFGRIA--- 283 (464)
Q Consensus 236 ~~~~~l~~~~~~~~~~~~a~~~~~~~--------------------------~~---~~~~~~~~~~~l~~~~~~~g--- 283 (464)
.....-+..-...++.+++......+ .- .+.....++..+.......+
T Consensus 548 ~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~ 627 (799)
T KOG4162|consen 548 VLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSA 627 (799)
T ss_pred hhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhc
Confidence 11111111111123333222211111 00 11111112221111111000
Q ss_pred ChHHHHHHHHHHHhccccC--C------hhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCccHHHHHHHHHHHHhcCCh
Q 044770 284 QVSRAEELWLEMQSVKQLK--A------TEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLV 355 (464)
Q Consensus 284 ~~~~a~~~~~~~~~~~~~~--~------~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~ 355 (464)
..+.. +......| + ...|......+.+.++.++|...+.+.... .......|......+...|.+
T Consensus 628 ~se~~------Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~-~~l~~~~~~~~G~~~~~~~~~ 700 (799)
T KOG4162|consen 628 GSELK------LPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKI-DPLSASVYYLRGLLLEVKGQL 700 (799)
T ss_pred ccccc------cCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhc-chhhHHHHHHhhHHHHHHHhh
Confidence 00000 11111111 1 124556667788888999998888887763 222445566666667788999
Q ss_pred HHHHHHHHHhHHHHhhhhhcCCCC-cHHHHHHHHHHHHhcCChhhHHH--HHHHHHHcCCCCcHHHHHHHHHHHHHcCCC
Q 044770 356 EEGFKALELGMKLITTKKVRSSTP-WLETTLSIIEIFAEKGDVGNAEN--LFEELKKANYTKYTFVYNTLIKAYVKAKIN 432 (464)
Q Consensus 356 ~~a~~~~~~~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~--~~~~m~~~~~~p~~~~~~~li~~~~~~g~~ 432 (464)
++|.+.|..++ .+.| ++....++...+.+.|+..-|.. ++.++.+.+. -+...|-.+-..+-+.|+.
T Consensus 701 ~EA~~af~~Al---------~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp-~n~eaW~~LG~v~k~~Gd~ 770 (799)
T KOG4162|consen 701 EEAKEAFLVAL---------ALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDP-LNHEAWYYLGEVFKKLGDS 770 (799)
T ss_pred HHHHHHHHHHH---------hcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHccch
Confidence 99999998883 4555 34566789999999998888877 9999988662 3455999999999999984
Q ss_pred --hhHHHHHHHhC
Q 044770 433 --DPNLLRRMILG 443 (464)
Q Consensus 433 --a~~~~~~m~~~ 443 (464)
|.+.|....+.
T Consensus 771 ~~Aaecf~aa~qL 783 (799)
T KOG4162|consen 771 KQAAECFQAALQL 783 (799)
T ss_pred HHHHHHHHHHHhh
Confidence 78888876664
No 77
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.15 E-value=5e-08 Score=77.31 Aligned_cols=199 Identities=13% Similarity=0.016 Sum_probs=137.2
Q ss_pred hHHHHHHHHHHhhCcHHHHHHHHHHHHHcCCCCchhhHHHHHHHhcCCCCcccHHHHHHHHHhCCCCCChhhHHHHHHHH
Q 044770 96 LLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIE 175 (464)
Q Consensus 96 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 175 (464)
.+...|.-+|...|++..|..-+++.++++ +-+..+|..+...|.+.|+.+.|.+.|+...+.. +-+..+.|.....+
T Consensus 36 ~arlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FL 113 (250)
T COG3063 36 KARLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFL 113 (250)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHH
Confidence 345566777888888888888888888764 3356677777888888888888888888887764 55566777777888
Q ss_pred HccCChhHHHHHHHHHHhCC-CCCcHhHHHHHHHHHHhcChhhHHHHHHHHHHhccCCCChhhHHHHHHHHHhhcChhhH
Q 044770 176 ANDHNIEGLMKVYSDMKRSE-VEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDL 254 (464)
Q Consensus 176 ~~~~~~~~a~~~~~~m~~~~-~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 254 (464)
|..|++++|...|++....- ..--..||..+.-|..+.|+.+.|...|++..+.. +-.+.+...+.....+.|++-.|
T Consensus 114 C~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d-p~~~~~~l~~a~~~~~~~~y~~A 192 (250)
T COG3063 114 CAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELD-PQFPPALLELARLHYKAGDYAPA 192 (250)
T ss_pred HhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhC-cCCChHHHHHHHHHHhcccchHH
Confidence 88888888888888877643 12234577777777778888888888888877753 23345555666666666776666
Q ss_pred HHHHHHhccCCCCchhhHHHHHHHhhccCChHHHHHHHHHHHh
Q 044770 255 ERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQS 297 (464)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 297 (464)
...++...........+.-..|+.-...|+.+.+.+.=..+..
T Consensus 193 r~~~~~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r 235 (250)
T COG3063 193 RLYLERYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQR 235 (250)
T ss_pred HHHHHHHHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 6666666665555555555555555556666555554444443
No 78
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.14 E-value=6.3e-08 Score=79.60 Aligned_cols=329 Identities=10% Similarity=0.005 Sum_probs=203.6
Q ss_pred hcCccChhchHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCCchhHHHHHHHHHhhcChHHHHHHhhhcCCCCCchhHHH
Q 044770 20 EGFPVHRGEIFHSINRLRKLQLNKRALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQGEKLFCCIPKDYQNELLYN 99 (464)
Q Consensus 20 ~g~~~~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 99 (464)
.|+......+..++..+.+..+++.|++++..-.++. +.+....+.|..+|-...++..|...++++....|...-|.
T Consensus 4 ~g~~i~EGeftaviy~lI~d~ry~DaI~~l~s~~Er~--p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYr 81 (459)
T KOG4340|consen 4 SGAQIPEGEFTAVVYRLIRDARYADAIQLLGSELERS--PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYR 81 (459)
T ss_pred ccccCCCCchHHHHHHHHHHhhHHHHHHHHHHHHhcC--ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHH
Confidence 4566666778889999999999999999998877643 23667778888899999999999999999988777665554
Q ss_pred H-HHHHHHhhCcHHHHHHHHHHHHHcCCCCchhhHHHHHH--HhcCCCCcccHHHHHHHHHhCCCCCChhhHHHHHHHHH
Q 044770 100 N-LVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLII--LNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEA 176 (464)
Q Consensus 100 ~-li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~--~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 176 (464)
. -...+-+.+.+..|+.+...|... |+...-..-+. .....+++..+..++++....| +..+.+...-...
T Consensus 82 lY~AQSLY~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gClly 155 (459)
T KOG4340|consen 82 LYQAQSLYKACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLY 155 (459)
T ss_pred HHHHHHHHHhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheee
Confidence 3 345667889999999999888653 22222111122 2346788999999998876433 3333333333456
Q ss_pred ccCChhHHHHHHHHHHhCCCCCcHhHHHHHHHHHHhcChhhHHHHHHHHHHhccCCCChhhHHHHHHHHHhhcChhhHHH
Q 044770 177 NDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLER 256 (464)
Q Consensus 177 ~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 256 (464)
+.|+++.|.+-|+...+-+---....|+..+..| +.|+++.|++...++.+.|++..+..---+ .-+.-++..
T Consensus 156 kegqyEaAvqkFqaAlqvsGyqpllAYniALaHy-~~~qyasALk~iSEIieRG~r~HPElgIGm------~tegiDvrs 228 (459)
T KOG4340|consen 156 KEGQYEAAVQKFQAALQVSGYQPLLAYNLALAHY-SSRQYASALKHISEIIERGIRQHPELGIGM------TTEGIDVRS 228 (459)
T ss_pred ccccHHHHHHHHHHHHhhcCCCchhHHHHHHHHH-hhhhHHHHHHHHHHHHHhhhhcCCccCccc------eeccCchhc
Confidence 8999999999999988765333566788766554 678999999999999888765433210000 000000000
Q ss_pred HHHHhccCCCCchhhHHHHHHHhhccCChHHHHHHHHHHHhcc-ccCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 044770 257 IWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVK-QLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGC 335 (464)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~ 335 (464)
+-....-....-...+|.-...+.+.|+++.|.+.+-+|.-+. ...|++|...+.-.- ..+++.+..+-+.-+.+...
T Consensus 229 vgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~nP 307 (459)
T KOG4340|consen 229 VGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQNP 307 (459)
T ss_pred ccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcCC
Confidence 0000000000001113333334556777777777777665322 223555555443221 22444445555555555433
Q ss_pred CccHHHHHHHHHHHHhcCChHHHHHHHHHh
Q 044770 336 KPNAITYRHLALGCFKSNLVEEGFKALELG 365 (464)
Q Consensus 336 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 365 (464)
....||..++-.|++..-++.|-+++.+-
T Consensus 308 -fP~ETFANlLllyCKNeyf~lAADvLAEn 336 (459)
T KOG4340|consen 308 -FPPETFANLLLLYCKNEYFDLAADVLAEN 336 (459)
T ss_pred -CChHHHHHHHHHHhhhHHHhHHHHHHhhC
Confidence 23567777777777777777776666543
No 79
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.14 E-value=2.9e-08 Score=86.94 Aligned_cols=128 Identities=9% Similarity=-0.085 Sum_probs=71.3
Q ss_pred hHHHHHHHHHHhhCcHHHHHHHHHHHHHcCCCCchhhHHHHHHHhcCCCCcccHHHHHHHHHhCCCCCChhhHHHHHHHH
Q 044770 96 LLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIE 175 (464)
Q Consensus 96 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 175 (464)
..|..+...+...|++++|...|++..+.. +.+...|+.+...+...|++++|...|+...+.. +-+..+|..+..++
T Consensus 65 ~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l 142 (296)
T PRK11189 65 QLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELD-PTYNYAYLNRGIAL 142 (296)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 345555566666666666666666666643 2345566666666666666666666666666543 23345555566666
Q ss_pred HccCChhHHHHHHHHHHhCCCCCcHhHHHHHHHHHHhcChhhHHHHHHHHHH
Q 044770 176 ANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALE 227 (464)
Q Consensus 176 ~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 227 (464)
...|++++|.+.|+...+. .|+..........+...++.++|...+.+..
T Consensus 143 ~~~g~~~eA~~~~~~al~~--~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~ 192 (296)
T PRK11189 143 YYGGRYELAQDDLLAFYQD--DPNDPYRALWLYLAESKLDPKQAKENLKQRY 192 (296)
T ss_pred HHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHccCCHHHHHHHHHHHH
Confidence 6666666666666666554 2332211111122233455666666665443
No 80
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.13 E-value=2e-08 Score=87.96 Aligned_cols=154 Identities=10% Similarity=-0.047 Sum_probs=119.3
Q ss_pred HhhcchHHHHHHHHHHHHcCCCCCC--chhHHHHHHHHHhhcChHHHHHHhhhcCCCCC-chhHHHHHHHHHHhhCcHHH
Q 044770 37 RKLQLNKRALEVMEWVIRERPYRPK--ELDYSYLLEFTIKNHGISQGEKLFCCIPKDYQ-NELLYNNLVIACLDKGVIKL 113 (464)
Q Consensus 37 ~~~~~~~~A~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~ 113 (464)
...+..+.++.-+.+++......|+ ...|..+...+...|+.++|...|++..+..| +...|+.+...+...|++++
T Consensus 37 ~~~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~ 116 (296)
T PRK11189 37 QPTLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDA 116 (296)
T ss_pred CCchHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHH
Confidence 3445667888888888864444443 24577788889999999999999999887744 67899999999999999999
Q ss_pred HHHHHHHHHHcCCCCchhhHHHHHHHhcCCCCcccHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHh
Q 044770 114 SLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKR 193 (464)
Q Consensus 114 a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 193 (464)
|...|+...+.. +-+..+|..+..++...|++++|.+.|+...+. .|+..........+...+++++|...|++...
T Consensus 117 A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~--~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~ 193 (296)
T PRK11189 117 AYEAFDSVLELD-PTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD--DPNDPYRALWLYLAESKLDPKQAKENLKQRYE 193 (296)
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHccCCHHHHHHHHHHHHh
Confidence 999999999854 234677888888889999999999999999875 34443223333334567889999999977653
No 81
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.12 E-value=8e-08 Score=76.20 Aligned_cols=196 Identities=8% Similarity=-0.047 Sum_probs=143.9
Q ss_pred hHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCCchhHHHHHHHHHhhcChHHHHHHhhhcCCC-CCchhHHHHHHHHHHh
Q 044770 29 IFHSINRLRKLQLNKRALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQGEKLFCCIPKD-YQNELLYNNLVIACLD 107 (464)
Q Consensus 29 ~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~li~~~~~ 107 (464)
...+.-.|.+.|+...|..-++..++.. +.+..+|..+...|.+.|+.+.|.+.|++.... +.+..+.|.....+|.
T Consensus 38 rlqLal~YL~~gd~~~A~~nlekAL~~D--Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~ 115 (250)
T COG3063 38 RLQLALGYLQQGDYAQAKKNLEKALEHD--PSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCA 115 (250)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC--cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHh
Confidence 3446667778888888888888888743 345567778888888888888888888887776 3456777888888888
Q ss_pred hCcHHHHHHHHHHHHHcCC-CCchhhHHHHHHHhcCCCCcccHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhHHHH
Q 044770 108 KGVIKLSLEYMKKMRVLGH-SISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMK 186 (464)
Q Consensus 108 ~~~~~~a~~~~~~m~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 186 (464)
.|++++|...|++....-. .--..+|..+.-+..+.|+.+.|...|++.++.. +-...+.-.+.....+.|++-.|..
T Consensus 116 qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d-p~~~~~~l~~a~~~~~~~~y~~Ar~ 194 (250)
T COG3063 116 QGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELD-PQFPPALLELARLHYKAGDYAPARL 194 (250)
T ss_pred CCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhC-cCCChHHHHHHHHHHhcccchHHHH
Confidence 8888888888888776422 2235677777777778888888888888887754 3344556667777778888888888
Q ss_pred HHHHHHhCCCCCcHhHHHHHHHHHHhcChhhHHHHHHHHHHh
Q 044770 187 VYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEK 228 (464)
Q Consensus 187 ~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 228 (464)
+++.....+. ++..+.-..|..--..|+.+.+-++=..+..
T Consensus 195 ~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r 235 (250)
T COG3063 195 YLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQR 235 (250)
T ss_pred HHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 8888777664 6777777777777777877777666555544
No 82
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.11 E-value=6.8e-07 Score=81.42 Aligned_cols=311 Identities=8% Similarity=-0.016 Sum_probs=143.5
Q ss_pred hHHHHHHHHHhhcChHHHHHHhhhcCCC-CCch---hHHHHHHHHHHhhCcHHHHHHHHHHHHHcCCCCchhhHHH---H
Q 044770 64 DYSYLLEFTIKNHGISQGEKLFCCIPKD-YQNE---LLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNR---L 136 (464)
Q Consensus 64 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~---~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~---l 136 (464)
.|..+...+...|+.+.+.+.+...... .++. .........+...|++++|.+.+++..+.. +.|...+.. .
T Consensus 8 a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~~~~~ 86 (355)
T cd05804 8 GHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDY-PRDLLALKLHLGA 86 (355)
T ss_pred HHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHhHHH
Confidence 3444455555566666655555443332 1111 112222334455677777777777666642 223333331 1
Q ss_pred HHHhcCCCCcccHHHHHHHHHhCCCCCC-hhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCcHhHHHHHHHHHHhcCh
Q 044770 137 IILNSSPGRRKTIPNILRQMKADKVAPH-VSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARL 215 (464)
Q Consensus 137 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~ 215 (464)
.......+..+.+.+.+... .+..|+ ......+...+...|++++|...+++..+.. +.+...+..+...+...|+
T Consensus 87 ~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g~ 163 (355)
T cd05804 87 FGLGDFSGMRDHVARVLPLW--APENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQGR 163 (355)
T ss_pred HHhcccccCchhHHHHHhcc--CcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCC
Confidence 11112233344444444331 111222 2233344455666666666666666666543 2234445555556666666
Q ss_pred hhHHHHHHHHHHhccCC-CChhhHHHHHHHHHhhcChhhHHHHHHHhccCCCCchhhHHHHHHHhhccCChHHHHHHHHH
Q 044770 216 YTVAETYVEALEKSMTG-NNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLE 294 (464)
Q Consensus 216 ~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 294 (464)
+++|..++++....... ++.. ...|..+...+...|++++|..+++.
T Consensus 164 ~~eA~~~l~~~l~~~~~~~~~~--------------------------------~~~~~~la~~~~~~G~~~~A~~~~~~ 211 (355)
T cd05804 164 FKEGIAFMESWRDTWDCSSMLR--------------------------------GHNWWHLALFYLERGDYEAALAIYDT 211 (355)
T ss_pred HHHHHHHHHhhhhccCCCcchh--------------------------------HHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 66666666665443211 1110 11233455556666666666666666
Q ss_pred HHhccc-cCChhhH-H--HHHHHHHhcCChhHHHHH--HHHHHhCCC--CccHHHHHHHHHHHHhcCChHHHHHHHHHhH
Q 044770 295 MQSVKQ-LKATEQY-N--SVISVYCKNGFIDKASGL--LKEMSMNGC--KPNAITYRHLALGCFKSNLVEEGFKALELGM 366 (464)
Q Consensus 295 ~~~~~~-~~~~~~~-~--~li~~~~~~~~~~~a~~~--~~~m~~~g~--~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 366 (464)
...... .+..... + .++.-+...|....+..+ +........ ............++...|+.+.|...++.+.
T Consensus 212 ~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~ 291 (355)
T cd05804 212 HIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALK 291 (355)
T ss_pred HhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 543221 0111111 1 122222233332222222 111111000 0111222245566778889999999998885
Q ss_pred HHHhhhhhcCCC-CcHHHHHHHHHHHHhcCChhhHHHHHHHHHHc
Q 044770 367 KLITTKKVRSST-PWLETTLSIIEIFAEKGDVGNAENLFEELKKA 410 (464)
Q Consensus 367 ~~~~~~~~~~~~-p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 410 (464)
.....+...+.. ..+...-...-++...|+.++|.+.+.+....
T Consensus 292 ~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~ 336 (355)
T cd05804 292 GRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDD 336 (355)
T ss_pred HHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 433221001111 11222223334456899999999999887753
No 83
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.11 E-value=4.4e-06 Score=72.20 Aligned_cols=394 Identities=12% Similarity=0.024 Sum_probs=236.9
Q ss_pred HHHHHHhhcchHHHHHHHHHHHHcC------------------CCCCCchhHHHHHHHHHhhcChHHHHHHhhhcCCCCC
Q 044770 32 SINRLRKLQLNKRALEVMEWVIRER------------------PYRPKELDYSYLLEFTIKNHGISQGEKLFCCIPKDYQ 93 (464)
Q Consensus 32 ~l~~~~~~~~~~~A~~~~~~~~~~~------------------~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 93 (464)
++....+...+..|++-|....++. ....+...-...+.+|.-.++-+.|...+...+....
T Consensus 49 l~~~~~h~r~yr~a~~~~~~~~~~~~s~~r~s~~~~~s~~~S~~~~~~~e~~r~~aecy~~~~n~~~Ai~~l~~~p~t~r 128 (564)
T KOG1174|consen 49 LLNANYKERNYRAALRHFDEIIHKRRLMMRHKNAVLVAIESSYPEFGDAEQRRRAAECYRQIGNTDMAIETLLQVPPTLR 128 (564)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHhhHhhccccccccccccccCCCcccHHHHHHHHHHHHHHccchHHHHHHhcCCcccc
Confidence 3444445566777888777766521 0111222345667778888899999999888876521
Q ss_pred chhHHHHHHHHHHhhC-c-HHH-------------HHHHHHHHHHcC---------------CCCchhhHHHHHHHhc--
Q 044770 94 NELLYNNLVIACLDKG-V-IKL-------------SLEYMKKMRVLG---------------HSISYLVFNRLIILNS-- 141 (464)
Q Consensus 94 ~~~~~~~li~~~~~~~-~-~~~-------------a~~~~~~m~~~~---------------~~~~~~~~~~l~~~~~-- 141 (464)
. .--|.++.-+-+.| + .++ |++.+.-..+.+ ++|...+...-+.+++
T Consensus 129 ~-p~inlMla~l~~~g~r~~~~vl~ykevvrecp~aL~~i~~ll~l~v~g~e~~S~~m~~~~~~~~~dwls~wika~Aq~ 207 (564)
T KOG1174|consen 129 S-PRINLMLARLQHHGSRHKEAVLAYKEVIRECPMALQVIEALLELGVNGNEINSLVMHAATVPDHFDWLSKWIKALAQM 207 (564)
T ss_pred c-hhHHHHHHHHHhccccccHHHHhhhHHHHhcchHHHHHHHHHHHhhcchhhhhhhhhheecCCCccHHHHHHHHHHHH
Confidence 1 12222222222221 1 111 222222222222 2222233333333332
Q ss_pred CCCCcccHHHHHHHHHh-CCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCcHhH-HHHHHHHHHhcChhhHH
Q 044770 142 SPGRRKTIPNILRQMKA-DKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVS-YCILATAHAVARLYTVA 219 (464)
Q Consensus 142 ~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~-~~~li~~~~~~~~~~~a 219 (464)
-.++...+...+-.+.. .-++.|+.....+.+.+...|+.++|...|++.... .|+..+ .....-.+.+.|+.+..
T Consensus 208 ~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~--dpy~i~~MD~Ya~LL~~eg~~e~~ 285 (564)
T KOG1174|consen 208 FNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCA--NPDNVEAMDLYAVLLGQEGGCEQD 285 (564)
T ss_pred HhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhC--ChhhhhhHHHHHHHHHhccCHhhH
Confidence 23444444444444433 335677788888899999999999999999887754 333222 22222234567777777
Q ss_pred HHHHHHHHhccCCCChhhHHHHHHHHHhhcChhhHHHHHHHhccCCCCchhhHHHHHHHhhccCChHHHHHHHHHHHhcc
Q 044770 220 ETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVK 299 (464)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 299 (464)
..+...+.... .-....|-.-........+++.|..+-+......+.+...+..-...+...|++++|.-.|+......
T Consensus 286 ~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La 364 (564)
T KOG1174|consen 286 SALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLA 364 (564)
T ss_pred HHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcc
Confidence 77766665432 12222333334445566677777777777666555555556656677888899999999998877632
Q ss_pred ccCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCccHHHHHHHH-HHHH-hcCChHHHHHHHHHhHHHHhhhhhcCC
Q 044770 300 QLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLA-LGCF-KSNLVEEGFKALELGMKLITTKKVRSS 377 (464)
Q Consensus 300 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll-~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~ 377 (464)
+-+..+|..++.+|...|++.+|..+-+..... +.-+..+...+. ..|. ...--++|..+++.. ..+
T Consensus 365 -p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~---------L~~ 433 (564)
T KOG1174|consen 365 -PYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKS---------LKI 433 (564)
T ss_pred -hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhh---------hcc
Confidence 236778999999999999999988877666553 333555555442 2232 233457788888876 455
Q ss_pred CCc-HHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCcHHHHHHHHHHHHHcCCC--hhHHHHHHHh
Q 044770 378 TPW-LETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKIN--DPNLLRRMIL 442 (464)
Q Consensus 378 ~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~--a~~~~~~m~~ 442 (464)
.|+ ....+.+...+...|+.+++..++++.... .||...-+.|-..+...+.. |+..|....+
T Consensus 434 ~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~--~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr 499 (564)
T KOG1174|consen 434 NPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLII--FPDVNLHNHLGDIMRAQNEPQKAMEYYYKALR 499 (564)
T ss_pred CCccHHHHHHHHHHHHhhCccchHHHHHHHHHhh--ccccHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 664 234557777788889999999999887764 47888888887777777653 6666665554
No 84
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.10 E-value=4.1e-07 Score=82.84 Aligned_cols=197 Identities=9% Similarity=-0.036 Sum_probs=128.2
Q ss_pred hHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCCchh-HHHHHHHHHhhcChHHHHHHhhhcCCCCC-chhHHHHHHHHHH
Q 044770 29 IFHSINRLRKLQLNKRALEVMEWVIRERPYRPKELD-YSYLLEFTIKNHGISQGEKLFCCIPKDYQ-NELLYNNLVIACL 106 (464)
Q Consensus 29 ~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~li~~~~ 106 (464)
+..+...+...|+.+.+.+.+....+.....++... .......+...|++++|.+.+++.....| +...+.. ...+.
T Consensus 9 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~-~~~~~ 87 (355)
T cd05804 9 HAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALKL-HLGAF 87 (355)
T ss_pred HHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHH-hHHHH
Confidence 444445555667778877777776654432333222 22223355678899999999988766644 4444442 22222
Q ss_pred h----hCcHHHHHHHHHHHHHcCCCCc-hhhHHHHHHHhcCCCCcccHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCh
Q 044770 107 D----KGVIKLSLEYMKKMRVLGHSIS-YLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNI 181 (464)
Q Consensus 107 ~----~~~~~~a~~~~~~m~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 181 (464)
. .+....+.+.+.. .....|+ ......+...+...|++++|...+++..+.. +.+...+..+...+...|++
T Consensus 88 ~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g~~ 164 (355)
T cd05804 88 GLGDFSGMRDHVARVLPL--WAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQGRF 164 (355)
T ss_pred HhcccccCchhHHHHHhc--cCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCH
Confidence 2 3445555555544 1112233 3344455667888999999999999998865 55567788888999999999
Q ss_pred hHHHHHHHHHHhCCC-CCcH--hHHHHHHHHHHhcChhhHHHHHHHHHHhc
Q 044770 182 EGLMKVYSDMKRSEV-EPNE--VSYCILATAHAVARLYTVAETYVEALEKS 229 (464)
Q Consensus 182 ~~a~~~~~~m~~~~~-~p~~--~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 229 (464)
++|...+++...... .|+. ..|..+...+...|++++|..++++....
T Consensus 165 ~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~ 215 (355)
T cd05804 165 KEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAP 215 (355)
T ss_pred HHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhcc
Confidence 999999998876532 2232 23556777888999999999999988543
No 85
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.06 E-value=2.1e-06 Score=88.54 Aligned_cols=338 Identities=9% Similarity=-0.023 Sum_probs=215.0
Q ss_pred HHHhhcChHHHHHHhhhcCCC--CCchhHHHHHHHHHHhhCcHHHHHHHHHHHHHcCC------CCc--hhhHHHHHHHh
Q 044770 71 FTIKNHGISQGEKLFCCIPKD--YQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGH------SIS--YLVFNRLIILN 140 (464)
Q Consensus 71 ~~~~~g~~~~a~~~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~------~~~--~~~~~~l~~~~ 140 (464)
.+...|+++.+..+++.++.. ..+..........+...|++++|...+......-- .+. ......+...+
T Consensus 383 ~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~ 462 (903)
T PRK04841 383 SLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVA 462 (903)
T ss_pred HHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHH
Confidence 344567888888888777532 11222233444555678999999999987765311 111 11222233456
Q ss_pred cCCCCcccHHHHHHHHHhCCCCCCh----hhHHHHHHHHHccCChhHHHHHHHHHHhCC--C-CCc--HhHHHHHHHHHH
Q 044770 141 SSPGRRKTIPNILRQMKADKVAPHV----STFHILMKIEANDHNIEGLMKVYSDMKRSE--V-EPN--EVSYCILATAHA 211 (464)
Q Consensus 141 ~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~--~-~p~--~~~~~~li~~~~ 211 (464)
...|++++|...+++..+.--..+. ...+.+...+...|++++|...+++..... . .+. ..++..+...+.
T Consensus 463 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~ 542 (903)
T PRK04841 463 INDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILF 542 (903)
T ss_pred HhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHH
Confidence 6899999999999998763111121 234556667788999999999998876421 1 111 234455666788
Q ss_pred hcChhhHHHHHHHHHHhc----cCCC---ChhhHHHHHHHHHhhcChhhHHHHHHHhccC-----CCCchhhHHHHHHHh
Q 044770 212 VARLYTVAETYVEALEKS----MTGN---NWSTLDVLIILYGYLAKGKDLERIWATVQEL-----PNVRSKSYVLAIEAF 279 (464)
Q Consensus 212 ~~~~~~~a~~~~~~~~~~----~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~~~~l~~~~ 279 (464)
..|++++|...+++.... +... ....+..+...+...|++++|...++..... +......+..+...+
T Consensus 543 ~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~ 622 (903)
T PRK04841 543 AQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKIS 622 (903)
T ss_pred HCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHH
Confidence 899999999998886542 2111 1233445566777889999999888876441 111233444566778
Q ss_pred hccCChHHHHHHHHHHHhccccC-ChhhHH-----HHHHHHHhcCChhHHHHHHHHHHhCCCCccH---HHHHHHHHHHH
Q 044770 280 GRIAQVSRAEELWLEMQSVKQLK-ATEQYN-----SVISVYCKNGFIDKASGLLKEMSMNGCKPNA---ITYRHLALGCF 350 (464)
Q Consensus 280 ~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~-----~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~---~~~~~ll~~~~ 350 (464)
...|+++.|...++......... ....+. ..+..+...|+.+.|..++............ ..+..+..++.
T Consensus 623 ~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~ 702 (903)
T PRK04841 623 LARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQI 702 (903)
T ss_pred HHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHH
Confidence 88999999999998875421111 111111 1224445578999999998776542211111 11345666788
Q ss_pred hcCChHHHHHHHHHhHHHHhhhhhcCCCC-cHHHHHHHHHHHHhcCChhhHHHHHHHHHHcC
Q 044770 351 KSNLVEEGFKALELGMKLITTKKVRSSTP-WLETTLSIIEIFAEKGDVGNAENLFEELKKAN 411 (464)
Q Consensus 351 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 411 (464)
..|+.++|...++.++.... ..+..+ ...+...+..++.+.|+.++|...+.+..+..
T Consensus 703 ~~g~~~~A~~~l~~al~~~~---~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 703 LLGQFDEAEIILEELNENAR---SLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred HcCCHHHHHHHHHHHHHHHH---HhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 88999999999999976532 233333 23556678888899999999999999988653
No 86
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.04 E-value=5.9e-06 Score=74.73 Aligned_cols=411 Identities=11% Similarity=0.015 Sum_probs=237.6
Q ss_pred hchHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCCchhHHHHHHHHHhhcChHHHHHHhhhcCCCCCchhHHHHHHHHH-
Q 044770 27 GEIFHSINRLRKLQLNKRALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQGEKLFCCIPKDYQNELLYNNLVIAC- 105 (464)
Q Consensus 27 ~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~li~~~- 105 (464)
..+.+-+..+...+++++|++....+... .+-+...+..-+-+++..+++++|+.+.+.-.....+...+ +=.+|
T Consensus 13 ~~l~t~ln~~~~~~e~e~a~k~~~Kil~~--~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~~~~--fEKAYc 88 (652)
T KOG2376|consen 13 EALLTDLNRHGKNGEYEEAVKTANKILSI--VPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVINSFF--FEKAYC 88 (652)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHHhc--CCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcchhh--HHHHHH
Confidence 35566677788899999999999999873 24556677777788899999999997776654321111111 23334
Q ss_pred -HhhCcHHHHHHHHHHHHHcCCCCc-hhhHHHHHHHhcCCCCcccHHHHHHHHHhCCCCCChhh--HHHHHHHHHccCCh
Q 044770 106 -LDKGVIKLSLEYMKKMRVLGHSIS-YLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVST--FHILMKIEANDHNI 181 (464)
Q Consensus 106 -~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~ 181 (464)
-+.+..++|+..++ |..++ ..+...-...+.+.|++++|..+|+.+.+.+ .++... -..++.+- -.
T Consensus 89 ~Yrlnk~Dealk~~~-----~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~-~dd~d~~~r~nl~a~~----a~ 158 (652)
T KOG2376|consen 89 EYRLNKLDEALKTLK-----GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNN-SDDQDEERRANLLAVA----AA 158 (652)
T ss_pred HHHcccHHHHHHHHh-----cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CchHHHHHHHHHHHHH----Hh
Confidence 46789999999987 33333 3355555667889999999999999998765 333221 11122111 11
Q ss_pred hHHHHHHHHHHhCCCCCcHhHHHHHHH---HHHhcChhhHHHHHHHHHHhcc-------CCCCh-------hhHHHHHHH
Q 044770 182 EGLMKVYSDMKRSEVEPNEVSYCILAT---AHAVARLYTVAETYVEALEKSM-------TGNNW-------STLDVLIIL 244 (464)
Q Consensus 182 ~~a~~~~~~m~~~~~~p~~~~~~~li~---~~~~~~~~~~a~~~~~~~~~~~-------~~~~~-------~~~~~l~~~ 244 (464)
-.+ +.+......| ..+|..+.+ .+...|++.+|+++++...+.+ -..+. ..-..+..+
T Consensus 159 l~~----~~~q~v~~v~-e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayV 233 (652)
T KOG2376|consen 159 LQV----QLLQSVPEVP-EDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYV 233 (652)
T ss_pred hhH----HHHHhccCCC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHH
Confidence 111 1222222233 445555544 3567899999999999883221 11111 122345566
Q ss_pred HHhhcChhhHHHHHHHhccCCCCchhh----HHHHHHHhhccCChH-HHHHHHHH------------HHh----------
Q 044770 245 YGYLAKGKDLERIWATVQELPNVRSKS----YVLAIEAFGRIAQVS-RAEELWLE------------MQS---------- 297 (464)
Q Consensus 245 ~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~l~~~~~~~g~~~-~a~~~~~~------------~~~---------- 297 (464)
+...|+-++|..++..+....+.+... -|.|+..-....-++ .++..++. +..
T Consensus 234 lQ~~Gqt~ea~~iy~~~i~~~~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~ 313 (652)
T KOG2376|consen 234 LQLQGQTAEASSIYVDIIKRNPADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNN 313 (652)
T ss_pred HHHhcchHHHHHHHHHHHHhcCCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 788999999999999887755444422 222221111111011 01111110 000
Q ss_pred --------------------ccccCChhhHHHHHHHHH--hcCChhHHHHHHHHHHhCCCCccHHHHHHHHHHHHhcCCh
Q 044770 298 --------------------VKQLKATEQYNSVISVYC--KNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLV 355 (464)
Q Consensus 298 --------------------~~~~~~~~~~~~li~~~~--~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~ 355 (464)
.+..|. ..+.+++.... +......+.+++...-+....-.....-..++.....|++
T Consensus 314 ~lL~l~tnk~~q~r~~~a~lp~~~p~-~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~ 392 (652)
T KOG2376|consen 314 ALLALFTNKMDQVRELSASLPGMSPE-SLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNP 392 (652)
T ss_pred HHHHHHhhhHHHHHHHHHhCCccCch-HHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCH
Confidence 011122 22333333222 2234667777777766542221234445556667889999
Q ss_pred HHHHHHHHHhHHHHh-hhhhcCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHHHc--CCCCcHH----HHHHHHHHHHH
Q 044770 356 EEGFKALELGMKLIT-TKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKA--NYTKYTF----VYNTLIKAYVK 428 (464)
Q Consensus 356 ~~a~~~~~~~~~~~~-~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--~~~p~~~----~~~~li~~~~~ 428 (464)
+.|.+++......-. +..+.+..|-.+ ..++..+.+.++.+.|..++.+...- .-.+... +|..+..--.+
T Consensus 393 ~~A~~il~~~~~~~~ss~~~~~~~P~~V--~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr 470 (652)
T KOG2376|consen 393 EVALEILSLFLESWKSSILEAKHLPGTV--GAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLR 470 (652)
T ss_pred HHHHHHHHHHhhhhhhhhhhhccChhHH--HHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHh
Confidence 999999993321100 004445555544 47888888888888888888876531 0012222 44444444456
Q ss_pred cCCC--hhHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 044770 429 AKIN--DPNLLRRMILGGARPDAETYSLLKLAEQ 460 (464)
Q Consensus 429 ~g~~--a~~~~~~m~~~~~~p~~~t~~~L~~~~~ 460 (464)
+|+. |..+++++.+.+ .+|..+..-|+.++.
T Consensus 471 ~G~~~ea~s~leel~k~n-~~d~~~l~~lV~a~~ 503 (652)
T KOG2376|consen 471 HGNEEEASSLLEELVKFN-PNDTDLLVQLVTAYA 503 (652)
T ss_pred cCchHHHHHHHHHHHHhC-CchHHHHHHHHHHHH
Confidence 6764 899999999854 467777777766654
No 87
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.99 E-value=4.3e-08 Score=84.56 Aligned_cols=247 Identities=13% Similarity=0.012 Sum_probs=126.9
Q ss_pred hhcChHHHHHHhhhcCCC-CCchhHHHHHHHHHHhhCcHHHHHHHHHHHHHcCCCCchhhHHHHHHHhcCCCCcccHHHH
Q 044770 74 KNHGISQGEKLFCCIPKD-YQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNI 152 (464)
Q Consensus 74 ~~g~~~~a~~~~~~~~~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 152 (464)
-.|++..++.-.+.-... .........+.+++...|+++.++. ++... -.|.......+...+...++-+.+..-
T Consensus 13 y~G~Y~~~i~e~~~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl~---ei~~~-~~~~l~av~~la~y~~~~~~~e~~l~~ 88 (290)
T PF04733_consen 13 YLGNYQQCINEASLKSFSPENKLERDFYQYRSYIALGQYDSVLS---EIKKS-SSPELQAVRLLAEYLSSPSDKESALEE 88 (290)
T ss_dssp CTT-HHHHCHHHHCHTSTCHHHHHHHHHHHHHHHHTT-HHHHHH---HS-TT-SSCCCHHHHHHHHHHCTSTTHHCHHHH
T ss_pred HhhhHHHHHHHhhccCCCchhHHHHHHHHHHHHHHcCChhHHHH---HhccC-CChhHHHHHHHHHHHhCccchHHHHHH
Confidence 445666555443311111 1123344455566666666554332 22222 245555554444444433333344443
Q ss_pred HHHHHhCCCCC-ChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCcHhHHHHHHHHHHhcChhhHHHHHHHHHHhccC
Q 044770 153 LRQMKADKVAP-HVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMT 231 (464)
Q Consensus 153 ~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~ 231 (464)
+++....+..+ +..........+...|++++|+++++.- .+.......+..+.+.++++.|.+.++.|.+..
T Consensus 89 l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~- 161 (290)
T PF04733_consen 89 LKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQID- 161 (290)
T ss_dssp HHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCS-
T ss_pred HHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-
Confidence 33333222221 1122222223444556666655555331 233444445555555566666655555554431
Q ss_pred CCChhhHHHHHHHHHhhcChhhHHHHHHHhccCCCCchhhHHHHHHHhhccCChHHHHHHHHHHHhccccCChhhHHHHH
Q 044770 232 GNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVI 311 (464)
Q Consensus 232 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li 311 (464)
.| .+...+ ..+.+..+...+.+.+|..+|+++.+ ...+++.+.+.+.
T Consensus 162 -eD-~~l~qL------------------------------a~awv~l~~g~e~~~~A~y~f~El~~-~~~~t~~~lng~A 208 (290)
T PF04733_consen 162 -ED-SILTQL------------------------------AEAWVNLATGGEKYQDAFYIFEELSD-KFGSTPKLLNGLA 208 (290)
T ss_dssp -CC-HHHHHH------------------------------HHHHHHHHHTTTCCCHHHHHHHHHHC-CS--SHHHHHHHH
T ss_pred -Cc-HHHHHH------------------------------HHHHHHHHhCchhHHHHHHHHHHHHh-ccCCCHHHHHHHH
Confidence 11 121111 11223333334568899999999876 4567888889999
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCCCccHHHHHHHHHHHHhcCCh-HHHHHHHHHh
Q 044770 312 SVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLV-EEGFKALELG 365 (464)
Q Consensus 312 ~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~-~~a~~~~~~~ 365 (464)
.++...|++++|.+++.+..+.... ++.++..++.+....|+. +.+.++++++
T Consensus 209 ~~~l~~~~~~eAe~~L~~al~~~~~-~~d~LaNliv~~~~~gk~~~~~~~~l~qL 262 (290)
T PF04733_consen 209 VCHLQLGHYEEAEELLEEALEKDPN-DPDTLANLIVCSLHLGKPTEAAERYLSQL 262 (290)
T ss_dssp HHHHHCT-HHHHHHHHHHHCCC-CC-HHHHHHHHHHHHHHTT-TCHHHHHHHHHC
T ss_pred HHHHHhCCHHHHHHHHHHHHHhccC-CHHHHHHHHHHHHHhCCChhHHHHHHHHH
Confidence 9999999999999999988765432 567777788877777877 6677788887
No 88
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.97 E-value=3.3e-08 Score=85.27 Aligned_cols=250 Identities=12% Similarity=-0.018 Sum_probs=135.0
Q ss_pred HHHHhhcchHHHHHHHHHHHHcCCCCCCchhHHHHHHHHHhhcChHHHHHHhhhcCCCCCchhHHHHHHHHHHhhCcHHH
Q 044770 34 NRLRKLQLNKRALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQGEKLFCCIPKDYQNELLYNNLVIACLDKGVIKL 113 (464)
Q Consensus 34 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~ 113 (464)
+...-.|++..++.-.+ ... ..-..+......+.+++...|+.+.+..-...-. .|.......+...+...++-+.
T Consensus 9 rn~fy~G~Y~~~i~e~~-~~~-~~~~~~~e~~~~~~Rs~iAlg~~~~vl~ei~~~~--~~~l~av~~la~y~~~~~~~e~ 84 (290)
T PF04733_consen 9 RNQFYLGNYQQCINEAS-LKS-FSPENKLERDFYQYRSYIALGQYDSVLSEIKKSS--SPELQAVRLLAEYLSSPSDKES 84 (290)
T ss_dssp HHHHCTT-HHHHCHHHH-CHT-STCHHHHHHHHHHHHHHHHTT-HHHHHHHS-TTS--SCCCHHHHHHHHHHCTSTTHHC
T ss_pred HHHHHhhhHHHHHHHhh-ccC-CCchhHHHHHHHHHHHHHHcCChhHHHHHhccCC--ChhHHHHHHHHHHHhCccchHH
Confidence 44445677777775555 221 1111123334455567777777665443333322 3555555444444433344455
Q ss_pred HHHHHHHHHHcCCC-CchhhHHHHHHHhcCCCCcccHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhHHHHHHHHHH
Q 044770 114 SLEYMKKMRVLGHS-ISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMK 192 (464)
Q Consensus 114 a~~~~~~m~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~ 192 (464)
++.-+++....+.. .+..........+...|++++|++++... .+.......+..+.+.++++.|.+.++.|.
T Consensus 85 ~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~ 158 (290)
T PF04733_consen 85 ALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQ 158 (290)
T ss_dssp HHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 55555444333322 22223333334566777777777766432 345556667777888888888888888887
Q ss_pred hCCCCCcHhHHHHHHHHHHh----cChhhHHHHHHHHHHhccCCCChhhHHHHHHHHHhhcChhhHHHHHHHhccCCCCc
Q 044770 193 RSEVEPNEVSYCILATAHAV----ARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVR 268 (464)
Q Consensus 193 ~~~~~p~~~~~~~li~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 268 (464)
+. . +..+...+..++.. ...+.+|..+|+++.+. .++++.+.+.+..++...|++++|++++.......+.+
T Consensus 159 ~~--~-eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~ 234 (290)
T PF04733_consen 159 QI--D-EDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPND 234 (290)
T ss_dssp CC--S-CCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCH
T ss_pred hc--C-CcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCC
Confidence 64 2 23344444444432 23567788888886554 55666666767777777777777777766666555555
Q ss_pred hhhHHHHHHHhhccCCh-HHHHHHHHHHHh
Q 044770 269 SKSYVLAIEAFGRIAQV-SRAEELWLEMQS 297 (464)
Q Consensus 269 ~~~~~~l~~~~~~~g~~-~~a~~~~~~~~~ 297 (464)
+.+...++......|+. +.+.+.+.++..
T Consensus 235 ~d~LaNliv~~~~~gk~~~~~~~~l~qL~~ 264 (290)
T PF04733_consen 235 PDTLANLIVCSLHLGKPTEAAERYLSQLKQ 264 (290)
T ss_dssp HHHHHHHHHHHHHTT-TCHHHHHHHHHCHH
T ss_pred HHHHHHHHHHHHHhCCChhHHHHHHHHHHH
Confidence 55555566655555655 455566666554
No 89
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.93 E-value=1.9e-05 Score=73.77 Aligned_cols=372 Identities=11% Similarity=-0.015 Sum_probs=231.9
Q ss_pred CCCCCchhHHHHHHHHHhhcChHHHHHHhhhcCCC-CCchhHHHHHHHHHHhhCcHHHHHHHHHHHHHcCCCC-chhhHH
Q 044770 57 PYRPKELDYSYLLEFTIKNHGISQGEKLFCCIPKD-YQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSI-SYLVFN 134 (464)
Q Consensus 57 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~-~~~~~~ 134 (464)
.+..+...|..+.-++..+|+++.+.+.|++.... ......|+.+...+...|.-..|+.+++.-......| |...+-
T Consensus 318 ~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~L 397 (799)
T KOG4162|consen 318 KFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLL 397 (799)
T ss_pred hhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHH
Confidence 35678888999999999999999999999987765 5567889999999999999999999998776543223 444444
Q ss_pred HHHHHhc-CCCCcccHHHHHHHHHhC--CC--CCChhhHHHHHHHHHc-----------cCChhHHHHHHHHHHhCCC-C
Q 044770 135 RLIILNS-SPGRRKTIPNILRQMKAD--KV--APHVSTFHILMKIEAN-----------DHNIEGLMKVYSDMKRSEV-E 197 (464)
Q Consensus 135 ~l~~~~~-~~~~~~~a~~~~~~~~~~--~~--~~~~~~~~~l~~~~~~-----------~~~~~~a~~~~~~m~~~~~-~ 197 (464)
..-..|. +.+.++++..+-.+..+. +. ......|..+.-+|.. .....++++.+++..+.+. .
T Consensus 398 masklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~d 477 (799)
T KOG4162|consen 398 MASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTD 477 (799)
T ss_pred HHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 4444454 456677777776666651 11 1222333333333322 1123457778888776642 3
Q ss_pred CcHhHHHHHHHHHHhcChhhHHHHHHHHHHhccCCCChhhHHHHHHHHHhhcChhhHHHHHHHhccCCCCchhhHHHHHH
Q 044770 198 PNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSKSYVLAIE 277 (464)
Q Consensus 198 p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 277 (464)
|+..-| +.--|+..++.+.|.+..++..+.+...+...|..+.-.+...+++.+|+.+.+......+.+-.....-+.
T Consensus 478 p~~if~--lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~~ 555 (799)
T KOG4162|consen 478 PLVIFY--LALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKIH 555 (799)
T ss_pred chHHHH--HHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhhh
Confidence 333222 333466789999999999999998778888999999999999999999999988766533322211111111
Q ss_pred HhhccCChHHHHHHHHHHHhc---------------------c-------ccCChhhHHHHHHHHHhcCChhHHHHHHHH
Q 044770 278 AFGRIAQVSRAEELWLEMQSV---------------------K-------QLKATEQYNSVISVYCKNGFIDKASGLLKE 329 (464)
Q Consensus 278 ~~~~~g~~~~a~~~~~~~~~~---------------------~-------~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 329 (464)
.-...++.+++......+... | ..-.+.++..+..-....+ ..+..-..
T Consensus 556 i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~--~~~~se~~- 632 (799)
T KOG4162|consen 556 IELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQL--KSAGSELK- 632 (799)
T ss_pred hhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhh--hhcccccc-
Confidence 111234444444433332210 0 0001122222221111110 00000000
Q ss_pred HHhCCCC--ccH------HHHHHHHHHHHhcCChHHHHHHHHHhHHHHhhhhhcCCCC-cHHHHHHHHHHHHhcCChhhH
Q 044770 330 MSMNGCK--PNA------ITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTP-WLETTLSIIEIFAEKGDVGNA 400 (464)
Q Consensus 330 m~~~g~~--p~~------~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A 400 (464)
+...-.. |+. ..|......+.+.+..++|...+.++ .++.| ....|......+...|.+++|
T Consensus 633 Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea---------~~~~~l~~~~~~~~G~~~~~~~~~~EA 703 (799)
T KOG4162|consen 633 LPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEA---------SKIDPLSASVYYLRGLLLEVKGQLEEA 703 (799)
T ss_pred cCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHH---------HhcchhhHHHHHHhhHHHHHHHhhHHH
Confidence 1111122 221 23444556677888899998888887 33334 566777777888899999999
Q ss_pred HHHHHHHHHcCCCCcH-HHHHHHHHHHHHcCCC--hhH--HHHHHHhCC
Q 044770 401 ENLFEELKKANYTKYT-FVYNTLIKAYVKAKIN--DPN--LLRRMILGG 444 (464)
Q Consensus 401 ~~~~~~m~~~~~~p~~-~~~~~li~~~~~~g~~--a~~--~~~~m~~~~ 444 (464)
.+.|......+ |+. .+.+++-..+.+.|+. |.. ++.+|.+.+
T Consensus 704 ~~af~~Al~ld--P~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~d 750 (799)
T KOG4162|consen 704 KEAFLVALALD--PDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLD 750 (799)
T ss_pred HHHHHHHHhcC--CCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhC
Confidence 99998888754 654 4999999999999975 555 788887754
No 90
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.93 E-value=4e-05 Score=70.30 Aligned_cols=102 Identities=16% Similarity=0.128 Sum_probs=74.0
Q ss_pred cCChhhHH--HHHHHHHhcCChhHHHHHHHHHHhCCCCccHH-HHHHHHHHHHhcCChHHHHHHHHHhHHHHhhhhhcCC
Q 044770 301 LKATEQYN--SVISVYCKNGFIDKASGLLKEMSMNGCKPNAI-TYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSS 377 (464)
Q Consensus 301 ~~~~~~~~--~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 377 (464)
+|++..|. -++..+-+.|+++.|..+++..++ ..|+.. .|..-.+.+.+.|++++|..+++++.++ -
T Consensus 366 ~PttllWt~y~laqh~D~~g~~~~A~~yId~AId--HTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~el--------D 435 (700)
T KOG1156|consen 366 PPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAID--HTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQEL--------D 435 (700)
T ss_pred CchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhc--cCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhc--------c
Confidence 45544444 466778889999999999999887 456543 4444456788899999999999998422 2
Q ss_pred CCcHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCC
Q 044770 378 TPWLETTLSIIEIFAEKGDVGNAENLFEELKKANY 412 (464)
Q Consensus 378 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 412 (464)
.||...-+-=..-..+..+.++|.++.......|.
T Consensus 436 ~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~ 470 (700)
T KOG1156|consen 436 TADRAINSKCAKYMLRANEIEEAEEVLSKFTREGF 470 (700)
T ss_pred chhHHHHHHHHHHHHHccccHHHHHHHHHhhhccc
Confidence 34544433455666788999999999988887764
No 91
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.93 E-value=1.2e-05 Score=77.24 Aligned_cols=333 Identities=11% Similarity=0.129 Sum_probs=204.7
Q ss_pred hhhHHHHhhcCc--cChhchHHHHHHHHhhcchHHHHHHHHHHHHcCCC-CCCchhHHHHHHHHHhhcChHHHHHHhhhc
Q 044770 12 SAFQSWMREGFP--VHRGEIFHSINRLRKLQLNKRALEVMEWVIRERPY-RPKELDYSYLLEFTIKNHGISQGEKLFCCI 88 (464)
Q Consensus 12 ~~l~~~~~~g~~--~~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 88 (464)
++++...+.++| -|+......++++...+-+.+-+++++.+.-.... .-+...-+.|+-...+. +.....+..+++
T Consensus 968 qLiDqVv~tal~E~~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAika-d~trVm~YI~rL 1046 (1666)
T KOG0985|consen 968 QLIDQVVQTALPETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIKA-DRTRVMEYINRL 1046 (1666)
T ss_pred HHHHHHHHhcCCccCChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhhc-ChHHHHHHHHHh
Confidence 445555555444 35666777888888888888888888887642211 11111223333333333 444555555555
Q ss_pred CCC-CCchhHHHHHHHHHHhhCcHHHHHHHHHHHHHcCCCCchhhHHHHHHHhcCCCCcccHHHHHHHHHhCCCCCChhh
Q 044770 89 PKD-YQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVST 167 (464)
Q Consensus 89 ~~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 167 (464)
..- .|+ +...+..++-+++|..+|++.. .+....+.|+.- -+..+.|.+.-++.. ...+
T Consensus 1047 dnyDa~~------ia~iai~~~LyEEAF~ifkkf~-----~n~~A~~VLie~---i~~ldRA~efAe~~n------~p~v 1106 (1666)
T KOG0985|consen 1047 DNYDAPD------IAEIAIENQLYEEAFAIFKKFD-----MNVSAIQVLIEN---IGSLDRAYEFAERCN------EPAV 1106 (1666)
T ss_pred ccCCchh------HHHHHhhhhHHHHHHHHHHHhc-----ccHHHHHHHHHH---hhhHHHHHHHHHhhC------ChHH
Confidence 442 122 2344556667788888886643 244455555542 234555555544432 3346
Q ss_pred HHHHHHHHHccCChhHHHHHHHHHHhCCCCCcHhHHHHHHHHHHhcChhhHHHHHHHHHHhccCCCChhhHHHHHHHHHh
Q 044770 168 FHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGY 247 (464)
Q Consensus 168 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 247 (464)
|..+..+-.+.|...+|.+-|=+. -|+..|..++..+.+.|.|++-.+++...++....|... +.++-+|++
T Consensus 1107 WsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~AyAk 1178 (1666)
T KOG0985|consen 1107 WSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIFAYAK 1178 (1666)
T ss_pred HHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHHHHH
Confidence 788888888888888888766443 266778888888888899988888888887776666544 467778888
Q ss_pred hcChhhHHHHHHHhccCCCCchhhHHHHHHHhhccCChHHHHHHHHHHHhccccCChhhHHHHHHHHHhcCChhHHHHHH
Q 044770 248 LAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLL 327 (464)
Q Consensus 248 ~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~ 327 (464)
.++..+.++++. .++......+.+-|...|.++.|.-+|..+. -|..+...+...|++..|...-
T Consensus 1179 t~rl~elE~fi~------gpN~A~i~~vGdrcf~~~~y~aAkl~y~~vS---------N~a~La~TLV~LgeyQ~AVD~a 1243 (1666)
T KOG0985|consen 1179 TNRLTELEEFIA------GPNVANIQQVGDRCFEEKMYEAAKLLYSNVS---------NFAKLASTLVYLGEYQGAVDAA 1243 (1666)
T ss_pred hchHHHHHHHhc------CCCchhHHHHhHHHhhhhhhHHHHHHHHHhh---------hHHHHHHHHHHHHHHHHHHHHh
Confidence 888776655432 2333345667777778888888877775443 4777777777778777776655
Q ss_pred HHHHhCCCCccHHHHHHHHHHHHhcCChHHHHHHHHHhHHHHhhhhhcCCCCcHHHHHHHHHHHHhcCChhhHHHHHHH
Q 044770 328 KEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEE 406 (464)
Q Consensus 328 ~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 406 (464)
++.- +..||-.+-.+|...+.+.-|. + ...++.....-..-|+..|-..|-+++...+++.
T Consensus 1244 RKAn------s~ktWK~VcfaCvd~~EFrlAQ-----i-------CGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea 1304 (1666)
T KOG0985|consen 1244 RKAN------STKTWKEVCFACVDKEEFRLAQ-----I-------CGLNIIVHADELEELIEYYQDRGYFEELISLLEA 1304 (1666)
T ss_pred hhcc------chhHHHHHHHHHhchhhhhHHH-----h-------cCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHh
Confidence 4432 4556666666666655554332 2 2233333444455666666666666666666554
No 92
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.90 E-value=1.5e-05 Score=82.31 Aligned_cols=333 Identities=11% Similarity=-0.047 Sum_probs=203.0
Q ss_pred HHHhhCcHHHHHHHHHHHHHcCCCCchhhHHHHHHHhcCCCCcccHHHHHHHHHhCC--C----CCCh--hhHHHHHHHH
Q 044770 104 ACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADK--V----APHV--STFHILMKIE 175 (464)
Q Consensus 104 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~----~~~~--~~~~~l~~~~ 175 (464)
.....|++..+...++.+.......+..........+...|+++++...+....+.- . .+.. .....+...+
T Consensus 383 ~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~ 462 (903)
T PRK04841 383 SLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVA 462 (903)
T ss_pred HHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHH
Confidence 344567777777776655321111122233334445567789999999988775421 0 1111 1222233456
Q ss_pred HccCChhHHHHHHHHHHhCCCCCcH----hHHHHHHHHHHhcChhhHHHHHHHHHHhccCC---C--ChhhHHHHHHHHH
Q 044770 176 ANDHNIEGLMKVYSDMKRSEVEPNE----VSYCILATAHAVARLYTVAETYVEALEKSMTG---N--NWSTLDVLIILYG 246 (464)
Q Consensus 176 ~~~~~~~~a~~~~~~m~~~~~~p~~----~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~---~--~~~~~~~l~~~~~ 246 (464)
...|++++|...+++..+.-...+. ...+.+...+...|++++|...+++....... + ...+...+...+.
T Consensus 463 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~ 542 (903)
T PRK04841 463 INDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILF 542 (903)
T ss_pred HhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHH
Confidence 6799999999999987653111121 23455566677899999999999887643111 1 1234455667788
Q ss_pred hhcChhhHHHHHHHhcc----CCCC----chhhHHHHHHHhhccCChHHHHHHHHHHHhcc--ccC--ChhhHHHHHHHH
Q 044770 247 YLAKGKDLERIWATVQE----LPNV----RSKSYVLAIEAFGRIAQVSRAEELWLEMQSVK--QLK--ATEQYNSVISVY 314 (464)
Q Consensus 247 ~~~~~~~a~~~~~~~~~----~~~~----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--~~~--~~~~~~~li~~~ 314 (464)
..|+++.|...++.... .... ....+..+...+...|++++|...+.+..... ..+ ....+..+...+
T Consensus 543 ~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~ 622 (903)
T PRK04841 543 AQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKIS 622 (903)
T ss_pred HCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHH
Confidence 89999999998877554 1111 12234455666777899999999998765421 111 233445566677
Q ss_pred HhcCChhHHHHHHHHHHhCC--CCccHH--HH--HHHHHHHHhcCChHHHHHHHHHhHHHHhhhhhcCCCCc---HHHHH
Q 044770 315 CKNGFIDKASGLLKEMSMNG--CKPNAI--TY--RHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPW---LETTL 385 (464)
Q Consensus 315 ~~~~~~~~a~~~~~~m~~~g--~~p~~~--~~--~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~p~---~~~~~ 385 (464)
...|++++|...+.+..... ...... .. ...+..+...|+.+.|...+.... ....... ...+.
T Consensus 623 ~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~-------~~~~~~~~~~~~~~~ 695 (903)
T PRK04841 623 LARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAP-------KPEFANNHFLQGQWR 695 (903)
T ss_pred HHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcC-------CCCCccchhHHHHHH
Confidence 88999999999988875421 111111 10 112233455789999998887762 1111111 11234
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHHc----CCCCcH-HHHHHHHHHHHHcCCC--hhHHHHHHHhC
Q 044770 386 SIIEIFAEKGDVGNAENLFEELKKA----NYTKYT-FVYNTLIKAYVKAKIN--DPNLLRRMILG 443 (464)
Q Consensus 386 ~li~~~~~~g~~~~A~~~~~~m~~~----~~~p~~-~~~~~li~~~~~~g~~--a~~~~~~m~~~ 443 (464)
.+..++...|+.++|...+++.... |..++. .+...+-.++.+.|+. |...+.+..+.
T Consensus 696 ~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~l 760 (903)
T PRK04841 696 NIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKL 760 (903)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 6777888999999999999987653 333322 3666777788888974 77777766654
No 93
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.88 E-value=1.3e-06 Score=86.39 Aligned_cols=233 Identities=9% Similarity=0.032 Sum_probs=117.9
Q ss_pred chhHHHHHHHHHHhhCcHHHHHHHHHHHHHcCCCCc-----hhhHHHHHHHhcCCCCcccHHHHHHHHHhCCCCCChhhH
Q 044770 94 NELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSIS-----YLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTF 168 (464)
Q Consensus 94 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 168 (464)
+...|-..|......++.++|.++.++.+.. +.+. ...|.++++.-...|.-+...++|+++.+.. -....|
T Consensus 1457 SSi~WI~YMaf~LelsEiekAR~iaerAL~t-IN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc--d~~~V~ 1533 (1710)
T KOG1070|consen 1457 SSILWIRYMAFHLELSEIEKARKIAERALKT-INFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC--DAYTVH 1533 (1710)
T ss_pred cchHHHHHHHHHhhhhhhHHHHHHHHHHhhh-CCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc--chHHHH
Confidence 3455666666666666666666666665542 2111 2345555555555555555566666665531 112345
Q ss_pred HHHHHHHHccCChhHHHHHHHHHHhCCCCCcHhHHHHHHHHHHhcChhhHHHHHHHHHHhccCCC-ChhhHHHHHHHHHh
Q 044770 169 HILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGN-NWSTLDVLIILYGY 247 (464)
Q Consensus 169 ~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~ 247 (464)
..|...|.+.+.+++|-++|+.|.+. +.-....|...+..+.+.++.+.|..++.+..+.-.+- ......
T Consensus 1534 ~~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~Is-------- 1604 (1710)
T KOG1070|consen 1534 LKLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFIS-------- 1604 (1710)
T ss_pred HHHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHH--------
Confidence 55666666666666666666666543 12244555555666666666666666666555431110 112222
Q ss_pred hcChhhHHHHHHHhccCCCCchhhHHHHHHHhhccCChHHHHHHHHHHHhccccCChhhHHHHHHHHHhcCChhHHHHHH
Q 044770 248 LAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLL 327 (464)
Q Consensus 248 ~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~ 327 (464)
-.+..-.+.|+.+++..+|+..... .+.-...|+..|+.-.++|+.+.+..+|
T Consensus 1605 --------------------------kfAqLEFk~GDaeRGRtlfEgll~a-yPKRtDlW~VYid~eik~~~~~~vR~lf 1657 (1710)
T KOG1070|consen 1605 --------------------------KFAQLEFKYGDAERGRTLFEGLLSA-YPKRTDLWSVYIDMEIKHGDIKYVRDLF 1657 (1710)
T ss_pred --------------------------HHHHHHhhcCCchhhHHHHHHHHhh-CccchhHHHHHHHHHHccCCHHHHHHHH
Confidence 3333344555555555555555542 2223345666666656666666666666
Q ss_pred HHHHhCCCCccH--HHHHHHHHHHHhcCChHHHHHHHHHh
Q 044770 328 KEMSMNGCKPNA--ITYRHLALGCFKSNLVEEGFKALELG 365 (464)
Q Consensus 328 ~~m~~~g~~p~~--~~~~~ll~~~~~~~~~~~a~~~~~~~ 365 (464)
++....++.|-. ..|...+..=-..|+-+.+..+=.++
T Consensus 1658 eRvi~l~l~~kkmKfffKkwLeyEk~~Gde~~vE~VKarA 1697 (1710)
T KOG1070|consen 1658 ERVIELKLSIKKMKFFFKKWLEYEKSHGDEKNVEYVKARA 1697 (1710)
T ss_pred HHHHhcCCChhHhHHHHHHHHHHHHhcCchhhHHHHHHHH
Confidence 666555555432 33444444333445444444333333
No 94
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.87 E-value=9e-06 Score=68.63 Aligned_cols=310 Identities=8% Similarity=-0.018 Sum_probs=158.1
Q ss_pred ChhchHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCCchhHHH---HHHHHHhhcChHHHHHHhhhcCCCCCchh-HHHH
Q 044770 25 HRGEIFHSINRLRKLQLNKRALEVMEWVIRERPYRPKELDYSY---LLEFTIKNHGISQGEKLFCCIPKDYQNEL-LYNN 100 (464)
Q Consensus 25 ~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~---l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~ 100 (464)
+..-...+-..+...|++..|+.-|...+. . |+..|.+ -...|...|+...|+.-|+++.+..||-. +--.
T Consensus 37 dvekhlElGk~lla~~Q~sDALt~yHaAve-~----dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQ 111 (504)
T KOG0624|consen 37 DVEKHLELGKELLARGQLSDALTHYHAAVE-G----DPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQ 111 (504)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHc-C----CchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHH
Confidence 334445566677777777777777777665 1 2233333 33466667777777777776666555532 2222
Q ss_pred HHHHHHhhCcHHHHHHHHHHHHHcCCCCc--hhhHHHHHHHhcCCCCcccHHHHHHHHHhCCCCCChhhHHHHHHHHHcc
Q 044770 101 LVIACLDKGVIKLSLEYMKKMRVLGHSIS--YLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEAND 178 (464)
Q Consensus 101 li~~~~~~~~~~~a~~~~~~m~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 178 (464)
-...+.+.|.++.|..-|+..++...... ...+..+.. .+++ ......+..+...
T Consensus 112 Rg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~--------------~~e~---------~~l~~ql~s~~~~ 168 (504)
T KOG0624|consen 112 RGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLAL--------------IQEH---------WVLVQQLKSASGS 168 (504)
T ss_pred hchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHh--------------HHHH---------HHHHHHHHHHhcC
Confidence 33456677777777777777776532110 111111100 0000 0001112223334
Q ss_pred CChhHHHHHHHHHHhCCCCCcHhHHHHHHHHHHhcChhhHHHHHHHHHHhccCCCChhhHHHHHHHHHhhcChhhHHHHH
Q 044770 179 HNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIW 258 (464)
Q Consensus 179 ~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 258 (464)
|+...|+.....+.+.. +-|...|..-..+|...|++..|+.-++..-+. ...+..++-.+-..+...|+.+......
T Consensus 169 GD~~~ai~~i~~llEi~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askL-s~DnTe~~ykis~L~Y~vgd~~~sL~~i 246 (504)
T KOG0624|consen 169 GDCQNAIEMITHLLEIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKL-SQDNTEGHYKISQLLYTVGDAENSLKEI 246 (504)
T ss_pred CchhhHHHHHHHHHhcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhc-cccchHHHHHHHHHHHhhhhHHHHHHHH
Confidence 44444444444444432 123333444444444444444444444333322 1223333333444444444444444444
Q ss_pred HHhccCCCCchhhHHH---H---------HHHhhccCChHHHHHHHHHHHhccccCChhh---HHHHHHHHHhcCChhHH
Q 044770 259 ATVQELPNVRSKSYVL---A---------IEAFGRIAQVSRAEELWLEMQSVKQLKATEQ---YNSVISVYCKNGFIDKA 323 (464)
Q Consensus 259 ~~~~~~~~~~~~~~~~---l---------~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~---~~~li~~~~~~~~~~~a 323 (464)
++..+..+.....|.. | +......++|.++.+-.+...+......... +..+-.++...|++.+|
T Consensus 247 RECLKldpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eA 326 (504)
T KOG0624|consen 247 RECLKLDPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEA 326 (504)
T ss_pred HHHHccCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHH
Confidence 4433322222111110 0 1223445667777777777666443322222 33444566677888888
Q ss_pred HHHHHHHHhCCCCcc-HHHHHHHHHHHHhcCChHHHHHHHHHhH
Q 044770 324 SGLLKEMSMNGCKPN-AITYRHLALGCFKSNLVEEGFKALELGM 366 (464)
Q Consensus 324 ~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 366 (464)
++...+.++ +.|| ..++.--..+|.-...++.|+.-|+.+.
T Consensus 327 iqqC~evL~--~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~ 368 (504)
T KOG0624|consen 327 IQQCKEVLD--IDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKAL 368 (504)
T ss_pred HHHHHHHHh--cCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 888888887 5565 6677777777888888888888888873
No 95
>PF12854 PPR_1: PPR repeat
Probab=98.85 E-value=3.8e-09 Score=57.89 Aligned_cols=33 Identities=30% Similarity=0.472 Sum_probs=28.6
Q ss_pred CCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHH
Q 044770 376 SSTPWLETTLSIIEIFAEKGDVGNAENLFEELK 408 (464)
Q Consensus 376 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 408 (464)
|+.||..||++||++|++.|++++|.++|++|+
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 678888899999999999999999999888874
No 96
>PF12854 PPR_1: PPR repeat
Probab=98.84 E-value=3.8e-09 Score=57.86 Aligned_cols=32 Identities=16% Similarity=0.399 Sum_probs=19.8
Q ss_pred CCCCChhhHHHHHHHHHccCChhHHHHHHHHH
Q 044770 160 KVAPHVSTFHILMKIEANDHNIEGLMKVYSDM 191 (464)
Q Consensus 160 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m 191 (464)
|+.||..+||+||++|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 55666666666666666666666666666655
No 97
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.84 E-value=3e-06 Score=83.89 Aligned_cols=222 Identities=12% Similarity=0.079 Sum_probs=171.1
Q ss_pred cHhHHHHHHHHHHhcChhhHHHHHHHHHHhc-cCCCC---hhhHHHHHHHHHhhcChhhHHHHHHHhccCCCCchhhHHH
Q 044770 199 NEVSYCILATAHAVARLYTVAETYVEALEKS-MTGNN---WSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSKSYVL 274 (464)
Q Consensus 199 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 274 (464)
+...|-..|......++.++|.++.++++.. +++-. ...|.++++.-...|.-+...++|+++.+...+-. +|..
T Consensus 1457 SSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqycd~~~-V~~~ 1535 (1710)
T KOG1070|consen 1457 SSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYCDAYT-VHLK 1535 (1710)
T ss_pred cchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhcchHH-HHHH
Confidence 3556777788888888888888888887654 11111 24566667776777778888888888877544333 5888
Q ss_pred HHHHhhccCChHHHHHHHHHHHhccccCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcc---HHHHHHHHHHHHh
Q 044770 275 AIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPN---AITYRHLALGCFK 351 (464)
Q Consensus 275 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~---~~~~~~ll~~~~~ 351 (464)
|...|.+.+.+++|.++++.|.+. .......|...+..+.++++-+.|..++.+..+. -|. .....-.++.-.+
T Consensus 1536 L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~--lPk~eHv~~IskfAqLEFk 1612 (1710)
T KOG1070|consen 1536 LLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKS--LPKQEHVEFISKFAQLEFK 1612 (1710)
T ss_pred HHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhh--cchhhhHHHHHHHHHHHhh
Confidence 999999999999999999999983 4457778999999999999999999999998873 444 2333444555678
Q ss_pred cCChHHHHHHHHHhHHHHhhhhhcCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCcHH--HHHHHHHHHHHc
Q 044770 352 SNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTF--VYNTLIKAYVKA 429 (464)
Q Consensus 352 ~~~~~~a~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~--~~~~li~~~~~~ 429 (464)
.|+.+++..+|+..+ ...+--...|+..|+.-.+.|+.+.+..+|++....++.|--. .|.-.+..=-++
T Consensus 1613 ~GDaeRGRtlfEgll--------~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~ 1684 (1710)
T KOG1070|consen 1613 YGDAERGRTLFEGLL--------SAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSH 1684 (1710)
T ss_pred cCCchhhHHHHHHHH--------hhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhc
Confidence 899999999999885 2233345678899999999999999999999999998877544 777888877778
Q ss_pred CCC
Q 044770 430 KIN 432 (464)
Q Consensus 430 g~~ 432 (464)
|++
T Consensus 1685 Gde 1687 (1710)
T KOG1070|consen 1685 GDE 1687 (1710)
T ss_pred Cch
Confidence 875
No 98
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.82 E-value=8.2e-05 Score=66.88 Aligned_cols=378 Identities=11% Similarity=-0.024 Sum_probs=216.5
Q ss_pred HHHHhhcchHHHHHHHHHHHHcCCCCCCchhHHHHHHHHHhhcChHHHHHHhhhcCCCCCc-hhHHHHHHHHHHhhCcHH
Q 044770 34 NRLRKLQLNKRALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQGEKLFCCIPKDYQN-ELLYNNLVIACLDKGVIK 112 (464)
Q Consensus 34 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~li~~~~~~~~~~ 112 (464)
.+....|+++.|+..|...+... +++...|+.-..+|++.|++++|.+=-.+-.+..|+ ...|.....++.-.|+++
T Consensus 10 naa~s~~d~~~ai~~~t~ai~l~--p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg~~~ 87 (539)
T KOG0548|consen 10 NAAFSSGDFETAIRLFTEAIMLS--PTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGLGDYE 87 (539)
T ss_pred HhhcccccHHHHHHHHHHHHccC--CCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhcccHH
Confidence 34567889999999999888743 457788888889999999999888777666655443 678888888888899999
Q ss_pred HHHHHHHHHHHcCCCCchhhHHHHHHHhcCC---CCcccHHHHHHHHHhCC---CCCChhhHHHHHHHHHc---------
Q 044770 113 LSLEYMKKMRVLGHSISYLVFNRLIILNSSP---GRRKTIPNILRQMKADK---VAPHVSTFHILMKIEAN--------- 177 (464)
Q Consensus 113 ~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~---~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~--------- 177 (464)
+|+.-|.+-++.. +.+...++.+..++... ++.-.--.++..+.... .......|..++..+-+
T Consensus 88 eA~~ay~~GL~~d-~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~l 166 (539)
T KOG0548|consen 88 EAILAYSEGLEKD-PSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLYL 166 (539)
T ss_pred HHHHHHHHHhhcC-CchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhccc
Confidence 9999998887753 33455566666655111 00000000111100000 00001111112111110
Q ss_pred -cCChhHHHHHHHH-----HHhCC-------CCC----------------------cHhHHHHHHHHHHhcChhhHHHHH
Q 044770 178 -DHNIEGLMKVYSD-----MKRSE-------VEP----------------------NEVSYCILATAHAVARLYTVAETY 222 (464)
Q Consensus 178 -~~~~~~a~~~~~~-----m~~~~-------~~p----------------------~~~~~~~li~~~~~~~~~~~a~~~ 222 (464)
...+..+...+.. +...| ..| -..-...+.++..+..+++.|.+-
T Consensus 167 ~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q~ 246 (539)
T KOG0548|consen 167 NDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQH 246 (539)
T ss_pred ccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHH
Confidence 0001111111100 00000 000 123355566666677777777777
Q ss_pred HHHHHhccCCCChhhHHHHHHHHHhhcChhhHHHHHHHhccCCCCch-------hhHHHHHHHhhccCChHHHHHHHHHH
Q 044770 223 VEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRS-------KSYVLAIEAFGRIAQVSRAEELWLEM 295 (464)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~~a~~~~~~~ 295 (464)
+....... -+..-++....+|...|.+...........+...... ..+..+..+|.+.++++.+...|.+.
T Consensus 247 y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~ka 324 (539)
T KOG0548|consen 247 YAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNAYTKREDYEGAIKYYQKA 324 (539)
T ss_pred HHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHH
Confidence 77666553 3444455555666666665555444443333221111 12222334556666677777777665
Q ss_pred HhccccCChhh-------------------------HHHHHHHHHhcCChhHHHHHHHHHHhCCCCccHHHHHHHHHHHH
Q 044770 296 QSVKQLKATEQ-------------------------YNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCF 350 (464)
Q Consensus 296 ~~~~~~~~~~~-------------------------~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~ 350 (464)
....-.|+... ...-...+.+.|++..|+..|.+++... +-|...|..-.-+|.
T Consensus 325 Lte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~-P~Da~lYsNRAac~~ 403 (539)
T KOG0548|consen 325 LTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRD-PEDARLYSNRAACYL 403 (539)
T ss_pred hhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC-CchhHHHHHHHHHHH
Confidence 54333332211 1111345667789999999999999865 336788888888899
Q ss_pred hcCChHHHHHHHHHhHHHHhhhhhcCCCCc-HHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCcHHHHHHHHHHHHH
Q 044770 351 KSNLVEEGFKALELGMKLITTKKVRSSTPW-LETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVK 428 (464)
Q Consensus 351 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~ 428 (464)
+.|.+..|+.-.+..++ ..|+ ...|.-=..++....+++.|.+.|++..+.+ |+..-+..-+.-|..
T Consensus 404 kL~~~~~aL~Da~~~ie---------L~p~~~kgy~RKg~al~~mk~ydkAleay~eale~d--p~~~e~~~~~~rc~~ 471 (539)
T KOG0548|consen 404 KLGEYPEALKDAKKCIE---------LDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELD--PSNAEAIDGYRRCVE 471 (539)
T ss_pred HHhhHHHHHHHHHHHHh---------cCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--chhHHHHHHHHHHHH
Confidence 99999999888777632 2443 3445555555666678888999998888865 666655544555544
No 99
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.81 E-value=7.6e-07 Score=80.11 Aligned_cols=256 Identities=10% Similarity=0.064 Sum_probs=180.4
Q ss_pred hcCCCCcccHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCcHhHHHHHHHHHHhcChhhHH
Q 044770 140 NSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVA 219 (464)
Q Consensus 140 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a 219 (464)
+.+.|++.+|.-.|+..++.. +-+...|-.|.......++-..|+..+++..+.. +-+....-.|.-.|...|.-..|
T Consensus 295 lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~q~~A 372 (579)
T KOG1125|consen 295 LMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEGLQNQA 372 (579)
T ss_pred HHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhhHHHH
Confidence 567888889998998888775 6677888888888888888888998888888763 22456677777788888888899
Q ss_pred HHHHHHHHhccCCC--------ChhhHHHHHHHHHhhcChhhHHHHHHHhcc-CC-CCchhhHHHHHHHhhccCChHHHH
Q 044770 220 ETYVEALEKSMTGN--------NWSTLDVLIILYGYLAKGKDLERIWATVQE-LP-NVRSKSYVLAIEAFGRIAQVSRAE 289 (464)
Q Consensus 220 ~~~~~~~~~~~~~~--------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~-~~~~~~~~~l~~~~~~~g~~~~a~ 289 (464)
...++.-....++- +...-.. ..+..........++|-.+.. .+ ..++.+...|...|--.|++++|.
T Consensus 373 l~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdrai 450 (579)
T KOG1125|consen 373 LKMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAV 450 (579)
T ss_pred HHHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHH
Confidence 98888765432110 0000000 011111223344455554444 33 378888999999999999999999
Q ss_pred HHHHHHHhccccCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCccH-HHHHHHHHHHHhcCChHHHHHHHHHhHHH
Q 044770 290 ELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNA-ITYRHLALGCFKSNLVEEGFKALELGMKL 368 (464)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 368 (464)
..|+..... -+-|...||.|...++...+.++|+..|++.++ ++|+- .....|.-.|...|.+++|...|=.++.+
T Consensus 451 Dcf~~AL~v-~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALq--LqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~m 527 (579)
T KOG1125|consen 451 DCFEAALQV-KPNDYLLWNRLGATLANGNRSEEAISAYNRALQ--LQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSM 527 (579)
T ss_pred HHHHHHHhc-CCchHHHHHHhhHHhcCCcccHHHHHHHHHHHh--cCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHh
Confidence 999999973 334788999999999999999999999999998 67764 34445666789999999999999988776
Q ss_pred HhhhhhcCCCC--cHHHHHHHHHHHHhcCChhhHHH
Q 044770 369 ITTKKVRSSTP--WLETTLSIIEIFAEKGDVGNAEN 402 (464)
Q Consensus 369 ~~~~~~~~~~p--~~~~~~~li~~~~~~g~~~~A~~ 402 (464)
........-.| +...|..|=.++.-.++.+.+.+
T Consensus 528 q~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~ 563 (579)
T KOG1125|consen 528 QRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQE 563 (579)
T ss_pred hhcccccccCCcchHHHHHHHHHHHHHcCCchHHHH
Confidence 54322222222 33455555555555666554433
No 100
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.78 E-value=2.5e-05 Score=66.04 Aligned_cols=296 Identities=10% Similarity=-0.009 Sum_probs=183.7
Q ss_pred HHHHHHhhCcHHHHHHHHHHHHHcCCCCchhhHHHHHHHhcCCCCcccHHHHHHHHHhCCCCCChhhHH-HHHHHHHccC
Q 044770 101 LVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFH-ILMKIEANDH 179 (464)
Q Consensus 101 li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~ 179 (464)
+...+...|++..|+.-|....+.+ +.+-.++-.-...|...|+...|+.=+...++. +||-..-. .-...+.+.|
T Consensus 44 lGk~lla~~Q~sDALt~yHaAve~d-p~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQRg~vllK~G 120 (504)
T KOG0624|consen 44 LGKELLARGQLSDALTHYHAAVEGD-PNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQRGVVLLKQG 120 (504)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHcCC-chhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHhchhhhhcc
Confidence 3344445555555555555554421 111111222223345555555555555555442 34422111 1123344555
Q ss_pred ChhHHHHHHHHHHhCCCC------------CcH--hHHHHHHHHHHhcChhhHHHHHHHHHHhccCCCChhhHHHHHHHH
Q 044770 180 NIEGLMKVYSDMKRSEVE------------PNE--VSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILY 245 (464)
Q Consensus 180 ~~~~a~~~~~~m~~~~~~------------p~~--~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 245 (464)
.+++|..=|+...+.... +-. ......+..+.-.|+...|+.+...+++. .+-|...+..-..+|
T Consensus 121 ele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi-~~Wda~l~~~Rakc~ 199 (504)
T KOG0624|consen 121 ELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEI-QPWDASLRQARAKCY 199 (504)
T ss_pred cHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhc-CcchhHHHHHHHHHH
Confidence 555555555555543210 001 11222344456688999999999998875 334667777778899
Q ss_pred HhhcChhhHHHHHHHhccCCCCchhhHHHHHHHhhccCChHHHHHHHHHHHhccccCChhh----HHH---H------HH
Q 044770 246 GYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQ----YNS---V------IS 312 (464)
Q Consensus 246 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~----~~~---l------i~ 312 (464)
...|++..|+.-++.+.+....++..+--+-..+...|+.+.++...++-.+.+ ||... |.. + +.
T Consensus 200 i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKld--pdHK~Cf~~YKklkKv~K~les~e 277 (504)
T KOG0624|consen 200 IAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLKLD--PDHKLCFPFYKKLKKVVKSLESAE 277 (504)
T ss_pred HhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccC--cchhhHHHHHHHHHHHHHHHHHHH
Confidence 999999999999998888777788778788888889999999999988888743 54322 211 1 12
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCCccHHHHH---HHHHHHHhcCChHHHHHHHHHhHHHHhhhhhcCCCCc-HHHHHHHH
Q 044770 313 VYCKNGFIDKASGLLKEMSMNGCKPNAITYR---HLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPW-LETTLSII 388 (464)
Q Consensus 313 ~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~---~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~p~-~~~~~~li 388 (464)
.....++|.++++-.+...+.........|+ .+-.++...+++.+|++...++ ..+.|+ +.++.--.
T Consensus 278 ~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~ev---------L~~d~~dv~~l~dRA 348 (504)
T KOG0624|consen 278 QAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEV---------LDIDPDDVQVLCDRA 348 (504)
T ss_pred HHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHH---------HhcCchHHHHHHHHH
Confidence 3345678888888888877754332233333 3444556678999999999888 456665 77777788
Q ss_pred HHHHhcCChhhHHHHHHHHHHcC
Q 044770 389 EIFAEKGDVGNAENLFEELKKAN 411 (464)
Q Consensus 389 ~~~~~~g~~~~A~~~~~~m~~~~ 411 (464)
.+|.-...+++|+.=|+...+.+
T Consensus 349 eA~l~dE~YD~AI~dye~A~e~n 371 (504)
T KOG0624|consen 349 EAYLGDEMYDDAIHDYEKALELN 371 (504)
T ss_pred HHHhhhHHHHHHHHHHHHHHhcC
Confidence 88888888888888888877653
No 101
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.74 E-value=4.6e-06 Score=68.96 Aligned_cols=281 Identities=11% Similarity=-0.018 Sum_probs=146.0
Q ss_pred HHHHHHHhcCCCCcccHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCcHhHHHH-HHHHHH
Q 044770 133 FNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCI-LATAHA 211 (464)
Q Consensus 133 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~-li~~~~ 211 (464)
+.+.+..+.+..++.+|++++..-.++. +.+....+.|..+|-...++..|-..|+++... .|...-|.. -.+.+.
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSLY 89 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELERS-PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSLY 89 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHHH
Confidence 4444444455555666666665555443 335555555666666666666666666666544 344444332 223444
Q ss_pred hcChhhHHHHHHHHHHhccCCCChhhHHHHHH--HHHhhcChhhHHHHHHHhccCCCCchhhHHHHHHHhhccCChHHHH
Q 044770 212 VARLYTVAETYVEALEKSMTGNNWSTLDVLII--LYGYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAE 289 (464)
Q Consensus 212 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 289 (464)
+.+.+..|+.+...|.+. ++...-..-+. .....++...+..++++.......+ +.+.......+.|+++.|.
T Consensus 90 ~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad--~~in~gCllykegqyEaAv 164 (459)
T KOG4340|consen 90 KACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEAD--GQINLGCLLYKEGQYEAAV 164 (459)
T ss_pred HhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccc--hhccchheeeccccHHHHH
Confidence 556666666666655442 11111111111 1223455555555555544322222 2444455556778888888
Q ss_pred HHHHHHHhccccCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCC-------------ccHHH--------HHHHHH-
Q 044770 290 ELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCK-------------PNAIT--------YRHLAL- 347 (464)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~-------------p~~~~--------~~~ll~- 347 (464)
+-|+...+-+.-.....||..+. ..+.|+++.|+++..+++++|++ ||..+ -+.++.
T Consensus 165 qkFqaAlqvsGyqpllAYniALa-Hy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eA 243 (459)
T KOG4340|consen 165 QKFQAALQVSGYQPLLAYNLALA-HYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEA 243 (459)
T ss_pred HHHHHHHhhcCCCchhHHHHHHH-HHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHH
Confidence 88877766544444556665443 44557778888888777776643 22111 122222
Q ss_pred ------HHHhcCChHHHHHHHHHhHHHHhhhhhcCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCcHHHHHH
Q 044770 348 ------GCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNT 421 (464)
Q Consensus 348 ------~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ 421 (464)
.+.+.++++.|.+.+-.|- .......|+.|...+.-. -..|++.+..+-+.-+...+. -...||..
T Consensus 244 fNLKaAIeyq~~n~eAA~eaLtDmP------PRaE~elDPvTLHN~Al~-n~~~~p~~g~~KLqFLL~~nP-fP~ETFAN 315 (459)
T KOG4340|consen 244 FNLKAAIEYQLRNYEAAQEALTDMP------PRAEEELDPVTLHNQALM-NMDARPTEGFEKLQFLLQQNP-FPPETFAN 315 (459)
T ss_pred hhhhhhhhhhcccHHHHHHHhhcCC------CcccccCCchhhhHHHHh-cccCCccccHHHHHHHHhcCC-CChHHHHH
Confidence 3456788888888777772 222333344443322211 123445555444444444432 12347777
Q ss_pred HHHHHHHcC
Q 044770 422 LIKAYVKAK 430 (464)
Q Consensus 422 li~~~~~~g 430 (464)
++--||+..
T Consensus 316 lLllyCKNe 324 (459)
T KOG4340|consen 316 LLLLYCKNE 324 (459)
T ss_pred HHHHHhhhH
Confidence 777777765
No 102
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.73 E-value=0.00017 Score=64.98 Aligned_cols=148 Identities=15% Similarity=0.142 Sum_probs=100.1
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCc-cHHHHHHHHHHHHhcCChHHHHHHHHHhHHHHhhhhhcCCCCcHHH
Q 044770 305 EQYNSVISVYCKNGFIDKASGLLKEMSMNGCKP-NAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLET 383 (464)
Q Consensus 305 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~p~~~~ 383 (464)
.+|...+..-.+..-+..|..+|.+..+.+..+ +...++.++.-++ +++.+.|.++|+.-+ ++.+-.|- -
T Consensus 367 Lv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFeLGL------kkf~d~p~--y 437 (656)
T KOG1914|consen 367 LVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFELGL------KKFGDSPE--Y 437 (656)
T ss_pred eehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHHHHH------HhcCCChH--H
Confidence 356667777777777888888888888877777 5566666666544 477788888888765 33444433 2
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHHcCCCCcH--HHHHHHHHHHHHcCCC--hhHHHHHHHhC---CCCCCHHHHHHHH
Q 044770 384 TLSIIEIFAEKGDVGNAENLFEELKKANYTKYT--FVYNTLIKAYVKAKIN--DPNLLRRMILG---GARPDAETYSLLK 456 (464)
Q Consensus 384 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~--~~~~~li~~~~~~g~~--a~~~~~~m~~~---~~~p~~~t~~~L~ 456 (464)
-...++.+...++-..|..+|++....++.|+. ..|..+|.-=+.-|+- +.++-+++... ...|.-.+-..++
T Consensus 438 v~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~~~qe~~~~~~~~~v 517 (656)
T KOG1914|consen 438 VLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFPADQEYEGNETALFV 517 (656)
T ss_pred HHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcchhhcCCCChHHHHH
Confidence 346777778888888888888888887666554 4888888888888874 56777766653 1223334444555
Q ss_pred HHHHh
Q 044770 457 LAEQF 461 (464)
Q Consensus 457 ~~~~~ 461 (464)
.-+++
T Consensus 518 ~RY~~ 522 (656)
T KOG1914|consen 518 DRYGI 522 (656)
T ss_pred HHHhh
Confidence 44443
No 103
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.72 E-value=0.00025 Score=68.71 Aligned_cols=373 Identities=10% Similarity=0.085 Sum_probs=211.4
Q ss_pred CcchhhHHHHhhcCccChhchHHHHHHHHhhcchHHHHHHHHHHHHc----------CCCCCCchhHHHHHHHHHhhcCh
Q 044770 9 PVGSAFQSWMREGFPVHRGEIFHSINRLRKLQLNKRALEVMEWVIRE----------RPYRPKELDYSYLLEFTIKNHGI 78 (464)
Q Consensus 9 ~~~~~l~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~----------~~~~~~~~~~~~l~~~~~~~g~~ 78 (464)
...+.++.|...+++-+-.....+...|..+--.+.-+++|+....- -++.-|+.+.-..+.+.++.|++
T Consensus 661 ~s~eclkaml~~NirqNlQi~VQvatky~eqlg~~~li~lFE~fks~eGL~yfLgSivn~seDpevh~KYIqAA~kt~Qi 740 (1666)
T KOG0985|consen 661 DSLECLKAMLSANIRQNLQIVVQVATKYHEQLGAQALIELFESFKSYEGLYYFLGSIVNFSEDPEVHFKYIQAACKTGQI 740 (1666)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCHHHHHHHHHhhccchhHHHHHHHHhccccCchHHHHHHHHHHhhccH
Confidence 34556667777777777776666666666665556666666654331 12445566666677777777777
Q ss_pred HHHHHHhhhc-----------------CCCCC------------chhH--------------------------------
Q 044770 79 SQGEKLFCCI-----------------PKDYQ------------NELL-------------------------------- 97 (464)
Q Consensus 79 ~~a~~~~~~~-----------------~~~~~------------~~~~-------------------------------- 97 (464)
.+..++-++- ....| +...
T Consensus 741 kEvERicresn~YdpErvKNfLkeAkL~DqlPLiiVCDRf~fVhdlvlYLyrnn~~kyIE~yVQkvNps~~p~VvG~LLD 820 (1666)
T KOG0985|consen 741 KEVERICRESNCYDPERVKNFLKEAKLTDQLPLIIVCDRFDFVHDLVLYLYRNNLQKYIEIYVQKVNPSRTPQVVGALLD 820 (1666)
T ss_pred HHHHHHHhccccCCHHHHHHHHHhccccccCceEEEecccccHHHHHHHHHHhhHHHHHHHHHhhcCCcccchhhhhhhc
Confidence 7766665431 00000 0000
Q ss_pred --------------------HHHHHHHHHhhCcHHHHHHHHHHHHHcCCCCchhhHHHHHHHhcCCCCcccHH-------
Q 044770 98 --------------------YNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIP------- 150 (464)
Q Consensus 98 --------------------~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~------- 150 (464)
-+-|..-+-+.++..--+..++...+.|.. |..++|+|...|..+++-.+-.
T Consensus 821 ~dC~E~~ik~Li~~v~gq~~~deLv~EvEkRNRLklLlp~LE~~i~eG~~-d~a~hnAlaKIyIDSNNnPE~fLkeN~yY 899 (1666)
T KOG0985|consen 821 VDCSEDFIKNLILSVRGQFPVDELVEEVEKRNRLKLLLPWLESLIQEGSQ-DPATHNALAKIYIDSNNNPERFLKENPYY 899 (1666)
T ss_pred CCCcHHHHHHHHHHHhccCChHHHHHHHHhhhhHHHHHHHHHHHHhccCc-chHHHhhhhheeecCCCChHHhcccCCcc
Confidence 011111233444555556667777777754 8889999998888766532211
Q ss_pred ---HHHHHHHhCCC----------CCCh---------hhHHHHHHHHHccCChhHHHH-----------HHHHHHhCCC-
Q 044770 151 ---NILRQMKADKV----------APHV---------STFHILMKIEANDHNIEGLMK-----------VYSDMKRSEV- 196 (464)
Q Consensus 151 ---~~~~~~~~~~~----------~~~~---------~~~~~l~~~~~~~~~~~~a~~-----------~~~~m~~~~~- 196 (464)
.+=+-..++.. ..|. ..|....+.+.+..+.+--.+ +.++..+.++
T Consensus 900 Ds~vVGkYCEKRDP~lA~vaYerGqcD~elI~vcNeNSlfK~~aRYlv~R~D~~LW~~VL~e~n~~rRqLiDqVv~tal~ 979 (1666)
T KOG0985|consen 900 DSKVVGKYCEKRDPHLACVAYERGQCDLELINVCNENSLFKSQARYLVERSDPDLWAKVLNEENPYRRQLIDQVVQTALP 979 (1666)
T ss_pred hhhHHhhhhcccCCceEEEeecccCCcHHHHHhcCchhHHHHHHHHHHhccChHHHHHHHhccChHHHHHHHHHHHhcCC
Confidence 11111111110 1111 123334444445555443332 3344444332
Q ss_pred -CCcHhHHHHHHHHHHhcChhhHHHHHHHHHHhcc--CCCChhhHHHHHHHHHhhcChhhHHHHHHHhccCCCCchhhHH
Q 044770 197 -EPNEVSYCILATAHAVARLYTVAETYVEALEKSM--TGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSKSYV 273 (464)
Q Consensus 197 -~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 273 (464)
..|+...+..++++...+-+.+-+++++++.-.. +..+...-+.++-. +-..+...+.++.+++..-..++.
T Consensus 980 E~~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLt-Aikad~trVm~YI~rLdnyDa~~i---- 1054 (1666)
T KOG0985|consen 980 ETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILT-AIKADRTRVMEYINRLDNYDAPDI---- 1054 (1666)
T ss_pred ccCChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHH-HhhcChHHHHHHHHHhccCCchhH----
Confidence 2355556677788888888888888888875432 12222222333322 223344445555555544222221
Q ss_pred HHHHHhhccCChHHHHHHHHHHHhcc---------------------ccCChhhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 044770 274 LAIEAFGRIAQVSRAEELWLEMQSVK---------------------QLKATEQYNSVISVYCKNGFIDKASGLLKEMSM 332 (464)
Q Consensus 274 ~l~~~~~~~g~~~~a~~~~~~~~~~~---------------------~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 332 (464)
.......+-+++|..+|++....+ -.-.+..|+.+..+-.+.|...+|++-|-+.
T Consensus 1055 --a~iai~~~LyEEAF~ifkkf~~n~~A~~VLie~i~~ldRA~efAe~~n~p~vWsqlakAQL~~~~v~dAieSyika-- 1130 (1666)
T KOG0985|consen 1055 --AEIAIENQLYEEAFAIFKKFDMNVSAIQVLIENIGSLDRAYEFAERCNEPAVWSQLAKAQLQGGLVKDAIESYIKA-- 1130 (1666)
T ss_pred --HHHHhhhhHHHHHHHHHHHhcccHHHHHHHHHHhhhHHHHHHHHHhhCChHHHHHHHHHHHhcCchHHHHHHHHhc--
Confidence 112222333344444433221100 0013447888999888889998888877543
Q ss_pred CCCCccHHHHHHHHHHHHhcCChHHHHHHHHHhHHHHhhhhhcCCCCcHHHHHHHHHHHHhcCChhhHHHHH
Q 044770 333 NGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLF 404 (464)
Q Consensus 333 ~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 404 (464)
-|+..|..++..+.+.|.+++-..++..+ .+..-.|.+.+ .||-+|++.++..+..+++
T Consensus 1131 ----dDps~y~eVi~~a~~~~~~edLv~yL~Ma-------Rkk~~E~~id~--eLi~AyAkt~rl~elE~fi 1189 (1666)
T KOG0985|consen 1131 ----DDPSNYLEVIDVASRTGKYEDLVKYLLMA-------RKKVREPYIDS--ELIFAYAKTNRLTELEEFI 1189 (1666)
T ss_pred ----CCcHHHHHHHHHHHhcCcHHHHHHHHHHH-------HHhhcCccchH--HHHHHHHHhchHHHHHHHh
Confidence 36778999999999999999999999988 66777887776 8999999999988866654
No 104
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.72 E-value=3.8e-06 Score=75.76 Aligned_cols=250 Identities=9% Similarity=-0.033 Sum_probs=186.2
Q ss_pred HHHhhCcHHHHHHHHHHHHHcCCCCchhhHHHHHHHhcCCCCcccHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhH
Q 044770 104 ACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEG 183 (464)
Q Consensus 104 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 183 (464)
-+.+.|++.+|.-.|+...+.+ +-+...|..|.......++-..|+..+.+..+.. +-|....-.|.-.|...|.-.+
T Consensus 294 ~lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~q~~ 371 (579)
T KOG1125|consen 294 NLMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEGLQNQ 371 (579)
T ss_pred HHHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhhHHH
Confidence 3567899999999999999875 4578999999999999999999999999998875 5667777888888999999999
Q ss_pred HHHHHHHHHhCCCC--------CcHhHHHHHHHHHHhcChhhHHHHHHHH-HHhccCCCChhhHHHHHHHHHhhcChhhH
Q 044770 184 LMKVYSDMKRSEVE--------PNEVSYCILATAHAVARLYTVAETYVEA-LEKSMTGNNWSTLDVLIILYGYLAKGKDL 254 (464)
Q Consensus 184 a~~~~~~m~~~~~~--------p~~~~~~~li~~~~~~~~~~~a~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 254 (464)
|++.++.......+ ++...-.. ..+..........++|-+ ....+..+|+.+...|.-.|...|+++.+
T Consensus 372 Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdra 449 (579)
T KOG1125|consen 372 ALKMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRA 449 (579)
T ss_pred HHHHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHH
Confidence 99999988654211 00000000 111222233344444444 45555568888899999999999999999
Q ss_pred HHHHHHhccCCCCchhhHHHHHHHhhccCChHHHHHHHHHHHhccccCC-hhhHHHHHHHHHhcCChhHHHHHHHHHHh-
Q 044770 255 ERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKA-TEQYNSVISVYCKNGFIDKASGLLKEMSM- 332 (464)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~- 332 (464)
...|+......+.+...||.|...++...+.++|...|.+..+. .|+ +.....|.-+|...|.+++|...|-..+.
T Consensus 450 iDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqL--qP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~m 527 (579)
T KOG1125|consen 450 VDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQL--QPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSM 527 (579)
T ss_pred HHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhc--CCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999984 454 44566678889999999999998876543
Q ss_pred --CC------CCccHHHHHHHHHHHHhcCChHHHH
Q 044770 333 --NG------CKPNAITYRHLALGCFKSNLVEEGF 359 (464)
Q Consensus 333 --~g------~~p~~~~~~~ll~~~~~~~~~~~a~ 359 (464)
.+ ..++...|.+|=.++.-.++.+.+.
T Consensus 528 q~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~ 562 (579)
T KOG1125|consen 528 QRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQ 562 (579)
T ss_pred hhcccccccCCcchHHHHHHHHHHHHHcCCchHHH
Confidence 21 1223345555555555555555443
No 105
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.70 E-value=0.00015 Score=68.66 Aligned_cols=366 Identities=10% Similarity=0.106 Sum_probs=200.7
Q ss_pred HHhhcchHHHHHHHHHHHHcCCCCCCchhHHHHHHHHHhhcChHHHHHHhhhcCCC-----------CCchhHHHHHHHH
Q 044770 36 LRKLQLNKRALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQGEKLFCCIPKD-----------YQNELLYNNLVIA 104 (464)
Q Consensus 36 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----------~~~~~~~~~li~~ 104 (464)
|..-|+.+.|.+-.+.+. +..+|..|..+|.+..++|-|.-.+..|... .++ ..=....-.
T Consensus 738 yvtiG~MD~AfksI~~Ik-------S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~-e~eakvAvL 809 (1416)
T KOG3617|consen 738 YVTIGSMDAAFKSIQFIK-------SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE-EDEAKVAVL 809 (1416)
T ss_pred EEEeccHHHHHHHHHHHh-------hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-chhhHHHHH
Confidence 445677777777666554 3468889999999998888888887777553 111 111222233
Q ss_pred HHhhCcHHHHHHHHHHHHHcCCCCchhhHHHHHHHhcCCCCcccHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhHH
Q 044770 105 CLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGL 184 (464)
Q Consensus 105 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 184 (464)
....|..++|..+|.+-++.+ .|=..|-..|.|++|.++-+.--+.. =..||.....-+-..++.+.|
T Consensus 810 AieLgMlEeA~~lYr~ckR~D---------LlNKlyQs~g~w~eA~eiAE~~DRiH---Lr~Tyy~yA~~Lear~Di~~A 877 (1416)
T KOG3617|consen 810 AIELGMLEEALILYRQCKRYD---------LLNKLYQSQGMWSEAFEIAETKDRIH---LRNTYYNYAKYLEARRDIEAA 877 (1416)
T ss_pred HHHHhhHHHHHHHHHHHHHHH---------HHHHHHHhcccHHHHHHHHhhcccee---hhhhHHHHHHHHHhhccHHHH
Confidence 456788888888888777642 34445667788888887765432211 123454555556667778888
Q ss_pred HHHHHHHHh----------CC---------CCCcHhHHHHHHHHHHhcChhhHHHHHHHHHHhccCCCChhhHHHHHHHH
Q 044770 185 MKVYSDMKR----------SE---------VEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILY 245 (464)
Q Consensus 185 ~~~~~~m~~----------~~---------~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 245 (464)
+++|++... .. -..|...|.......-..|+.+.|+.+|....+ |-++++..
T Consensus 878 leyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~fs~VrI~ 948 (1416)
T KOG3617|consen 878 LEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD---------YFSMVRIK 948 (1416)
T ss_pred HHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh---------hhhheeeE
Confidence 877765321 10 012333444444444556666677666665543 33455556
Q ss_pred HhhcChhhHHHHHHHhccCCCCchhhHHHHHHHhhccCChHHHHHHHHHHHhccccCChhhHHHHHHHHHhcCChhHHHH
Q 044770 246 GYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASG 325 (464)
Q Consensus 246 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~ 325 (464)
|-.|+.++|-++-++- .+....-.|.+.|-..|++.+|..+|.+... +...|..|-.+ ++++-+.
T Consensus 949 C~qGk~~kAa~iA~es-----gd~AAcYhlaR~YEn~g~v~~Av~FfTrAqa---------fsnAIRlcKEn-d~~d~L~ 1013 (1416)
T KOG3617|consen 949 CIQGKTDKAARIAEES-----GDKAACYHLARMYENDGDVVKAVKFFTRAQA---------FSNAIRLCKEN-DMKDRLA 1013 (1416)
T ss_pred eeccCchHHHHHHHhc-----ccHHHHHHHHHHhhhhHHHHHHHHHHHHHHH---------HHHHHHHHHhc-CHHHHHH
Confidence 6667777766655432 2222344677777788888888888776653 33333332222 2222111
Q ss_pred HHHHH-------------HhCCCCccHHHHHHHHHHHHhcCChHHHHHHHHHh-----HHHHhhhhhcCCCCcHHHHHHH
Q 044770 326 LLKEM-------------SMNGCKPNAITYRHLALGCFKSNLVEEGFKALELG-----MKLITTKKVRSSTPWLETTLSI 387 (464)
Q Consensus 326 ~~~~m-------------~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~-----~~~~~~~~~~~~~p~~~~~~~l 387 (464)
-+.-| .+.|.. +...+..|-+.|.+.+|+++--.- +++.. .+..-..|+...+.-
T Consensus 1014 nlal~s~~~d~v~aArYyEe~g~~-----~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa--~DLd~~sDp~ll~Rc 1086 (1416)
T KOG3617|consen 1014 NLALMSGGSDLVSAARYYEELGGY-----AHKAVMLYHKAGMIGKALELAFRTQQFSALDLIA--KDLDAGSDPKLLRRC 1086 (1416)
T ss_pred HHHhhcCchhHHHHHHHHHHcchh-----hhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHH--HhcCCCCCHHHHHHH
Confidence 11111 111111 112233455556655554432111 11111 233334456666667
Q ss_pred HHHHHhcCChhhHHHHHHHHHHcCCCCcHHHHHHHHHHHHHcCCChhHHHHHHHh--CCCCCCHHHH-HHHHHHHHh
Q 044770 388 IEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKINDPNLLRRMIL--GGARPDAETY-SLLKLAEQF 461 (464)
Q Consensus 388 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~a~~~~~~m~~--~~~~p~~~t~-~~L~~~~~~ 461 (464)
.+.++...++++|..++-..++ |...+.-|...|-...+-|.+|.. +.-.|+..+- .+|.+...+
T Consensus 1087 adFF~~~~qyekAV~lL~~ar~---------~~~AlqlC~~~nv~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~ 1154 (1416)
T KOG3617|consen 1087 ADFFENNQQYEKAVNLLCLARE---------FSGALQLCKNRNVRVTEEFAELMTPTKDDMPNEQERKQVLEQVAEL 1154 (1416)
T ss_pred HHHHHhHHHHHHHHHHHHHHHH---------HHHHHHHHhcCCCchhHHHHHhcCcCcCCCccHHHHHHHHHHHHHH
Confidence 7777888888888888766655 445555555555444444444442 2234555555 455544433
No 106
>PLN02789 farnesyltranstransferase
Probab=98.70 E-value=1.4e-05 Score=70.17 Aligned_cols=201 Identities=8% Similarity=-0.002 Sum_probs=91.9
Q ss_pred cChHHHHHHhhhcCCCCC-chhHHHHHHHHHHhhC-cHHHHHHHHHHHHHcCCCCchhhHHHHHHHhcCCCC--cccHHH
Q 044770 76 HGISQGEKLFCCIPKDYQ-NELLYNNLVIACLDKG-VIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGR--RKTIPN 151 (464)
Q Consensus 76 g~~~~a~~~~~~~~~~~~-~~~~~~~li~~~~~~~-~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~--~~~a~~ 151 (464)
++.++|+.+.+++....| +..+|+.....+...| ++++++..++++.+.+ +-+..+|+.....+.+.|+ .+++..
T Consensus 51 e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~l~~l~~~~~~~el~ 129 (320)
T PLN02789 51 ERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWLAEKLGPDAANKELE 129 (320)
T ss_pred CCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHHHHHcCchhhHHHHH
Confidence 344455555544444322 2334444444444444 3566666666665543 2233344433333333333 144555
Q ss_pred HHHHHHhCCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCcHhHHHHHHHHHHhc---Chh----hHHHHHHH
Q 044770 152 ILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVA---RLY----TVAETYVE 224 (464)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~---~~~----~~a~~~~~ 224 (464)
+++.+.+.. +-|..+|+....++...|+++++++.++++.+.++. |...|+.....+.+. |.. ++.+.+..
T Consensus 130 ~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~ 207 (320)
T PLN02789 130 FTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRSPLLGGLEAMRDSELKYTI 207 (320)
T ss_pred HHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhccccccccccHHHHHHHHH
Confidence 565555544 445556666666666666666666666666655432 444555444443332 111 23444444
Q ss_pred HHHhccCCCChhhHHHHHHHHHhh----cChhhHHHHHHHhccCCCCchhhHHHHHHHhh
Q 044770 225 ALEKSMTGNNWSTLDVLIILYGYL----AKGKDLERIWATVQELPNVRSKSYVLAIEAFG 280 (464)
Q Consensus 225 ~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 280 (464)
++... .+-|...|+-+...+... +...++...+..+....+.+......|++.|+
T Consensus 208 ~aI~~-~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~ 266 (320)
T PLN02789 208 DAILA-NPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLC 266 (320)
T ss_pred HHHHh-CCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHH
Confidence 44333 223444554444444442 22233444444433333333333444444444
No 107
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.67 E-value=9.6e-06 Score=75.28 Aligned_cols=221 Identities=10% Similarity=-0.027 Sum_probs=121.0
Q ss_pred CCCchhHHHHHHHHHhhcChHHHHHHhhhcCCCCCchhHHHHHHHHHHhhCcHHHHHHHHHHHHHcCCCCchhhHHHHHH
Q 044770 59 RPKELDYSYLLEFTIKNHGISQGEKLFCCIPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLII 138 (464)
Q Consensus 59 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~ 138 (464)
+|-...-..+...+.+.|=...|..+|+++. .|.-.|.+|+..|+..+|..+..+..+ -+||...|..+.+
T Consensus 395 pp~Wq~q~~laell~slGitksAl~I~Erle-------mw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGD 465 (777)
T KOG1128|consen 395 PPIWQLQRLLAELLLSLGITKSALVIFERLE-------MWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGD 465 (777)
T ss_pred CCcchHHHHHHHHHHHcchHHHHHHHHHhHH-------HHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhh
Confidence 3333444455556666666666666666543 355566666666666666666655555 2456666666666
Q ss_pred HhcCCCCcccHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCcHhHHHHHHHHHHhcChhhH
Q 044770 139 LNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTV 218 (464)
Q Consensus 139 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~ 218 (464)
......-+++|.++++..... .-..+.......+++.++.+.|+.-.+.. +.-..+|-..-.+..+.++++.
T Consensus 466 v~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek~q~ 537 (777)
T KOG1128|consen 466 VLHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEKEQA 537 (777)
T ss_pred hccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhhhHH
Confidence 555555555666555544321 11111122223566666666665544332 2234455555555556666666
Q ss_pred HHHHHHHHHhccCCCChhhHHHHHHHHHhhcChhhHHHHHHHhccCCCCchhhHHHHHHHhhccCChHHHHHHHHHHHh
Q 044770 219 AETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQS 297 (464)
Q Consensus 219 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 297 (464)
|.+.|...... -+.+...||.+-.+|.+.++..+|...+.+..+-...+...|...+-...+.|.+++|.+.+.++.+
T Consensus 538 av~aF~rcvtL-~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~ 615 (777)
T KOG1128|consen 538 AVKAFHRCVTL-EPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLD 615 (777)
T ss_pred HHHHHHHHhhc-CCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHH
Confidence 66666655442 2334456666666666666666666666666554444444555555566666666666666665543
No 108
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.67 E-value=5e-05 Score=70.77 Aligned_cols=107 Identities=15% Similarity=0.122 Sum_probs=53.5
Q ss_pred HHHhcChhhHHHHHHHHHHhccCCCChhhHHHHHHHHHhhcChhhHHHHHHHhccCCCCchhhHHHHHHHhhccCChHHH
Q 044770 209 AHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRA 288 (464)
Q Consensus 209 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 288 (464)
+....++|.+|+.+++.+++.... ..-|..+.+.|...|+++.|+++|-... .++-.|..|.+.|+|+.|
T Consensus 741 aai~akew~kai~ildniqdqk~~--s~yy~~iadhyan~~dfe~ae~lf~e~~--------~~~dai~my~k~~kw~da 810 (1636)
T KOG3616|consen 741 AAIGAKEWKKAISILDNIQDQKTA--SGYYGEIADHYANKGDFEIAEELFTEAD--------LFKDAIDMYGKAGKWEDA 810 (1636)
T ss_pred HHhhhhhhhhhHhHHHHhhhhccc--cccchHHHHHhccchhHHHHHHHHHhcc--------hhHHHHHHHhccccHHHH
Confidence 344455666666666655554321 2334455556666666666666655431 144556666666666666
Q ss_pred HHHHHHHHhccccCChhhHHHHHHHHHhcCChhHHHHHH
Q 044770 289 EELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLL 327 (464)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~ 327 (464)
.++-++... ....+..|-+-..-+-.+|++.+|.++|
T Consensus 811 ~kla~e~~~--~e~t~~~yiakaedldehgkf~eaeqly 847 (1636)
T KOG3616|consen 811 FKLAEECHG--PEATISLYIAKAEDLDEHGKFAEAEQLY 847 (1636)
T ss_pred HHHHHHhcC--chhHHHHHHHhHHhHHhhcchhhhhhee
Confidence 655444332 2223333443334444444444444443
No 109
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.64 E-value=6.2e-06 Score=70.12 Aligned_cols=186 Identities=13% Similarity=-0.037 Sum_probs=105.6
Q ss_pred cHhHHHHHHHHHHhcChhhHHHHHHHHHHhccCCCCh---hhHHHHHHHHHhhcChhhHHHHHHHhccCCCCchh---hH
Q 044770 199 NEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNW---STLDVLIILYGYLAKGKDLERIWATVQELPNVRSK---SY 272 (464)
Q Consensus 199 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~ 272 (464)
....+..+...+.+.|++++|...++++..... .+. .++..+..++...|+++.|...++.+.+..+.+.. .+
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 110 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYP-FSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAY 110 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHH
Confidence 455666677777888888888888888766432 121 34566667777777777777777777663333322 34
Q ss_pred HHHHHHhhcc--------CChHHHHHHHHHHHhccccCCh-hhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCccHHHHH
Q 044770 273 VLAIEAFGRI--------AQVSRAEELWLEMQSVKQLKAT-EQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYR 343 (464)
Q Consensus 273 ~~l~~~~~~~--------g~~~~a~~~~~~~~~~~~~~~~-~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~ 343 (464)
..+..++... |+++.|.+.|+.+.+.. |+. ..+..+... .. .... . . ....
T Consensus 111 ~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~a~~~~-~~---~~~~-------~------~-~~~~ 170 (235)
T TIGR03302 111 YLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRY--PNSEYAPDAKKRM-DY---LRNR-------L------A-GKEL 170 (235)
T ss_pred HHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHC--CCChhHHHHHHHH-HH---HHHH-------H------H-HHHH
Confidence 4444444433 55666666666666532 221 122111110 00 0000 0 0 0011
Q ss_pred HHHHHHHhcCChHHHHHHHHHhHHHHhhhhhcCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHHHc
Q 044770 344 HLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKA 410 (464)
Q Consensus 344 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 410 (464)
.+...+.+.|++++|...++.+++. ..+.......+..+..++.+.|++++|...++.+...
T Consensus 171 ~~a~~~~~~g~~~~A~~~~~~al~~-----~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 171 YVARFYLKRGAYVAAINRFETVVEN-----YPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHH-----CCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 3445567778888888888887531 1112223456677888888888888888887777654
No 110
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.63 E-value=3.5e-06 Score=78.06 Aligned_cols=215 Identities=14% Similarity=0.086 Sum_probs=139.9
Q ss_pred HHHHHHhcCCCCcccHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCcHhHHHHHHHHHHhc
Q 044770 134 NRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVA 213 (464)
Q Consensus 134 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 213 (464)
..+...+...|-...|..+|+++. .|.-.+.+|...|+..+|..+..+..++ +||...|..+.......
T Consensus 402 ~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LGDv~~d~ 470 (777)
T KOG1128|consen 402 RLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLGDVLHDP 470 (777)
T ss_pred HHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhhhhccCh
Confidence 344455666666667777766554 3555667777777777777777766663 66777777766666666
Q ss_pred ChhhHHHHHHHHHHhccCCCChhhHHHHHHHHHhhcChhhHHHHHHHhccCCCCchhhHHHHHHHhhccCChHHHHHHHH
Q 044770 214 RLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWL 293 (464)
Q Consensus 214 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 293 (464)
.-+++|.++.+..-.. .-..+.....+.++++++.+.|+.-.+..+....+|-.+..+..+.++++.|.+.|.
T Consensus 471 s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~ 543 (777)
T KOG1128|consen 471 SLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFH 543 (777)
T ss_pred HHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHH
Confidence 6666776666554222 111111222335667777777777666666666677777777777777777777777
Q ss_pred HHHhccccCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCccHHHHHHHHHHHHhcCChHHHHHHHHHhHHH
Q 044770 294 EMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKL 368 (464)
Q Consensus 294 ~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 368 (464)
.-.. +.+-+...||.+-.+|.+.++-.+|...+.+..+-.. -+...|...+....+.|.+++|++.+..+.++
T Consensus 544 rcvt-L~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~-~~w~iWENymlvsvdvge~eda~~A~~rll~~ 616 (777)
T KOG1128|consen 544 RCVT-LEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNY-QHWQIWENYMLVSVDVGEFEDAIKAYHRLLDL 616 (777)
T ss_pred HHhh-cCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCC-CCCeeeechhhhhhhcccHHHHHHHHHHHHHh
Confidence 7776 3334566778888888887777778777777777552 24445555566667777777777777777654
No 111
>PLN02789 farnesyltranstransferase
Probab=98.62 E-value=4.7e-05 Score=66.85 Aligned_cols=215 Identities=7% Similarity=-0.018 Sum_probs=141.1
Q ss_pred HHHHHHHHHHhhCcHHHHHHHHHHHHHcCCCCchhhHHHHHHHhcCCC-CcccHHHHHHHHHhCCCCCChhhHHHHHHHH
Q 044770 97 LYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPG-RRKTIPNILRQMKADKVAPHVSTFHILMKIE 175 (464)
Q Consensus 97 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 175 (464)
++..+-..+...++.++|+.+.+++++.. +-+..+|+..-.++...| ++++++..++.+.+.. +.+..+|+.....+
T Consensus 39 a~~~~ra~l~~~e~serAL~lt~~aI~ln-P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~l 116 (320)
T PLN02789 39 AMDYFRAVYASDERSPRALDLTADVIRLN-PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWLA 116 (320)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHHH
Confidence 34444455566788899999999998853 224455665555566666 5789999999988765 55666777665555
Q ss_pred HccCCh--hHHHHHHHHHHhCCCCCcHhHHHHHHHHHHhcChhhHHHHHHHHHHhccCCCChhhHHHHHHHHHhh---cC
Q 044770 176 ANDHNI--EGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYL---AK 250 (464)
Q Consensus 176 ~~~~~~--~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~ 250 (464)
.+.|.. ++++.+++++.+.. +-|..+|+....++.+.|+++++++.++++.+.++. +...|+.....+.+. |.
T Consensus 117 ~~l~~~~~~~el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~~~l~~ 194 (320)
T PLN02789 117 EKLGPDAANKELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRSPLLGG 194 (320)
T ss_pred HHcCchhhHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhcccccc
Confidence 566653 67888888888765 337788888888888889999999999999887543 455565555554443 22
Q ss_pred h----hhHHHHHHHhccCCCCchhhHHHHHHHhhcc----CChHHHHHHHHHHHhccccCChhhHHHHHHHHHh
Q 044770 251 G----KDLERIWATVQELPNVRSKSYVLAIEAFGRI----AQVSRAEELWLEMQSVKQLKATEQYNSVISVYCK 316 (464)
Q Consensus 251 ~----~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~----g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 316 (464)
. +.............+.+...|+.+...+... +...+|.+.+.+..+.+ +.++.....|++.|+.
T Consensus 195 ~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~-~~s~~al~~l~d~~~~ 267 (320)
T PLN02789 195 LEAMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKD-SNHVFALSDLLDLLCE 267 (320)
T ss_pred ccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhccc-CCcHHHHHHHHHHHHh
Confidence 2 3445555555555556666677766666652 33455666666655522 2345556666666654
No 112
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.61 E-value=1.3e-05 Score=65.36 Aligned_cols=159 Identities=11% Similarity=-0.010 Sum_probs=111.5
Q ss_pred HHHHHHHHhhcChhhHHHHHHHhccCCCCchhhHHHHHHHhhccCChHHHHHHHHHHHhccccCChhhHHHHHHHHHhcC
Q 044770 239 DVLIILYGYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNG 318 (464)
Q Consensus 239 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~ 318 (464)
..+-..+...|+-+....+........+.+......++....+.|++..|...|.+... .-++|...|+.+.-+|.+.|
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~-l~p~d~~~~~~lgaaldq~G 148 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAAR-LAPTDWEAWNLLGAALDQLG 148 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhc-cCCCChhhhhHHHHHHHHcc
Confidence 44555666667766666666666666666665566677777888888888888888877 55667888888888888888
Q ss_pred ChhHHHHHHHHHHhCCCCc-cHHHHHHHHHHHHhcCChHHHHHHHHHhHHHHhhhhhcCCCCcHHHHHHHHHHHHhcCCh
Q 044770 319 FIDKASGLLKEMSMNGCKP-NAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDV 397 (464)
Q Consensus 319 ~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~ 397 (464)
+++.|..-|.+..+. .| ++..++.+.-.+.-.|+.+.|..++.... ..-.-+..+-..|.......|++
T Consensus 149 r~~~Ar~ay~qAl~L--~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~--------l~~~ad~~v~~NLAl~~~~~g~~ 218 (257)
T COG5010 149 RFDEARRAYRQALEL--APNEPSIANNLGMSLLLRGDLEDAETLLLPAY--------LSPAADSRVRQNLALVVGLQGDF 218 (257)
T ss_pred ChhHHHHHHHHHHHh--ccCCchhhhhHHHHHHHcCCHHHHHHHHHHHH--------hCCCCchHHHHHHHHHHhhcCCh
Confidence 888888888887773 33 34556677777777788888888887772 12222445556677777788888
Q ss_pred hhHHHHHHHHH
Q 044770 398 GNAENLFEELK 408 (464)
Q Consensus 398 ~~A~~~~~~m~ 408 (464)
.+|..+...-.
T Consensus 219 ~~A~~i~~~e~ 229 (257)
T COG5010 219 REAEDIAVQEL 229 (257)
T ss_pred HHHHhhccccc
Confidence 88887765433
No 113
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.60 E-value=1.5e-05 Score=64.98 Aligned_cols=160 Identities=13% Similarity=0.025 Sum_probs=116.5
Q ss_pred HHHHHHhcCCCCcccHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCcHhHHHHHHHHHHhc
Q 044770 134 NRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVA 213 (464)
Q Consensus 134 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 213 (464)
..+-..+...|+-+....+........ +.|....+.++....+.|++..|...|++..... ++|...|+.+.-+|.+.
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~-~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq~ 147 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIAY-PKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQL 147 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhccC-cccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHHc
Confidence 555566777777777777776654322 4455566667888888888888888888886543 66788888888888888
Q ss_pred ChhhHHHHHHHHHHhccCCCChhhHHHHHHHHHhhcChhhHHHHHHHhccCCCCchhhHHHHHHHhhccCChHHHHHHHH
Q 044770 214 RLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWL 293 (464)
Q Consensus 214 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 293 (464)
|+++.|..-|.+..+. .+-++...+.+.-.+.-.|+.+.|..++......+..+..+-..+.......|+++.|.++..
T Consensus 148 Gr~~~Ar~ay~qAl~L-~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~~ 226 (257)
T COG5010 148 GRFDEARRAYRQALEL-APNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIAV 226 (257)
T ss_pred cChhHHHHHHHHHHHh-ccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhcc
Confidence 8888888888887775 334556667777777777888888887777777777777677777777777788777777665
Q ss_pred HHH
Q 044770 294 EMQ 296 (464)
Q Consensus 294 ~~~ 296 (464)
.-.
T Consensus 227 ~e~ 229 (257)
T COG5010 227 QEL 229 (257)
T ss_pred ccc
Confidence 433
No 114
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.60 E-value=6.4e-05 Score=70.12 Aligned_cols=326 Identities=13% Similarity=0.120 Sum_probs=192.7
Q ss_pred hcCccChhchHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCCchhHHHHHHHHHhhcChHHHHHHhhhcCCCCCchhHHH
Q 044770 20 EGFPVHRGEIFHSINRLRKLQLNKRALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQGEKLFCCIPKDYQNELLYN 99 (464)
Q Consensus 20 ~g~~~~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 99 (464)
.|.|.-...-.+.++++...|+-+.|-++-+ +.-.--+.+..|.+.|.+-.|.+....-.....+.....
T Consensus 583 ~~~p~~eklk~sy~q~l~dt~qd~ka~elk~----------sdgd~laaiqlyika~~p~~a~~~a~n~~~l~~de~il~ 652 (1636)
T KOG3616|consen 583 KGHPALEKLKRSYLQALMDTGQDEKAAELKE----------SDGDGLAAIQLYIKAGKPAKAARAALNDEELLADEEILE 652 (1636)
T ss_pred cCChHHHHHHHHHHHHHHhcCchhhhhhhcc----------ccCccHHHHHHHHHcCCchHHHHhhcCHHHhhccHHHHH
Confidence 3555555555566777777777666655321 111223556788888888777665432111112333333
Q ss_pred HHHHHHHhhCcHHHHHHHHHHHHHc---------C-------------CCCchhhHH-HHHHHhcCCCCcccHHHHHHHH
Q 044770 100 NLVIACLDKGVIKLSLEYMKKMRVL---------G-------------HSISYLVFN-RLIILNSSPGRRKTIPNILRQM 156 (464)
Q Consensus 100 ~li~~~~~~~~~~~a~~~~~~m~~~---------~-------------~~~~~~~~~-~l~~~~~~~~~~~~a~~~~~~~ 156 (464)
.+..++.+..-+++|-.+|+++..- | ++..+.+.. .-..-+...|+++.|..-|-+.
T Consensus 653 ~ia~alik~elydkagdlfeki~d~dkale~fkkgdaf~kaielarfafp~evv~lee~wg~hl~~~~q~daainhfiea 732 (1636)
T KOG3616|consen 653 HIAAALIKGELYDKAGDLFEKIHDFDKALECFKKGDAFGKAIELARFAFPEEVVKLEEAWGDHLEQIGQLDAAINHFIEA 732 (1636)
T ss_pred HHHHHHHhhHHHHhhhhHHHHhhCHHHHHHHHHcccHHHHHHHHHHhhCcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHh
Confidence 3334444433344444444333210 0 000011000 0011112223333333333221
Q ss_pred HhCCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCcHhHHHHHHHHHHhcChhhHHHHHHHHHHhccCCCChh
Q 044770 157 KADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWS 236 (464)
Q Consensus 157 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 236 (464)
. ..-..+.+......|.+|+.+++.+..+.. -.--|..+...|+..|+++.|.++|-+. .
T Consensus 733 ~---------~~~kaieaai~akew~kai~ildniqdqk~--~s~yy~~iadhyan~~dfe~ae~lf~e~---------~ 792 (1636)
T KOG3616|consen 733 N---------CLIKAIEAAIGAKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDFEIAEELFTEA---------D 792 (1636)
T ss_pred h---------hHHHHHHHHhhhhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhHHHHHHHHHhc---------c
Confidence 1 112234556677889999999988876532 2334677788899999999999988653 2
Q ss_pred hHHHHHHHHHhhcChhhHHHHHHHhccCCCCchhhHHHHHHHhhccCChHHHHHHHHHHHhccccCChhhHHHHHHHHHh
Q 044770 237 TLDVLIILYGYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCK 316 (464)
Q Consensus 237 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 316 (464)
.++-.+..|.+.|+++.|.++-..... +......|.+-..-+-+.|++.+|.+++-.+.. |+ ..|..|-+
T Consensus 793 ~~~dai~my~k~~kw~da~kla~e~~~-~e~t~~~yiakaedldehgkf~eaeqlyiti~~----p~-----~aiqmydk 862 (1636)
T KOG3616|consen 793 LFKDAIDMYGKAGKWEDAFKLAEECHG-PEATISLYIAKAEDLDEHGKFAEAEQLYITIGE----PD-----KAIQMYDK 862 (1636)
T ss_pred hhHHHHHHHhccccHHHHHHHHHHhcC-chhHHHHHHHhHHhHHhhcchhhhhheeEEccC----ch-----HHHHHHHh
Confidence 355677889999999999887666543 333344566666777788999999988866554 43 36778889
Q ss_pred cCChhHHHHHHHHHHhCCCCccHHHHHHHHHHHHhcCChHHHHHHHHHhHHHHhhhhhcCCCCcHHHHHHHHHHHHhcCC
Q 044770 317 NGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGD 396 (464)
Q Consensus 317 ~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~ 396 (464)
.|..+..+++..+-.... -..|-..+..-+...|++..|..-|-++ . -|.+-+++|-..+-
T Consensus 863 ~~~~ddmirlv~k~h~d~---l~dt~~~f~~e~e~~g~lkaae~~flea---------~-------d~kaavnmyk~s~l 923 (1636)
T KOG3616|consen 863 HGLDDDMIRLVEKHHGDH---LHDTHKHFAKELEAEGDLKAAEEHFLEA---------G-------DFKAAVNMYKASEL 923 (1636)
T ss_pred hCcchHHHHHHHHhChhh---hhHHHHHHHHHHHhccChhHHHHHHHhh---------h-------hHHHHHHHhhhhhh
Confidence 999998888877643211 1345556667778889999988877665 1 23456777877888
Q ss_pred hhhHHHHH
Q 044770 397 VGNAENLF 404 (464)
Q Consensus 397 ~~~A~~~~ 404 (464)
|++|-++-
T Consensus 924 w~dayria 931 (1636)
T KOG3616|consen 924 WEDAYRIA 931 (1636)
T ss_pred HHHHHHHH
Confidence 88877764
No 115
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.59 E-value=1e-05 Score=68.78 Aligned_cols=64 Identities=5% Similarity=-0.130 Sum_probs=34.3
Q ss_pred hhhHHHHHHHhcCCCCcccHHHHHHHHHhCCCCCCh---hhHHHHHHHHHccCChhHHHHHHHHHHhC
Q 044770 130 YLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHV---STFHILMKIEANDHNIEGLMKVYSDMKRS 194 (464)
Q Consensus 130 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 194 (464)
...+..+...+...|+++.|...|+++.... +.+. ..+..+..++.+.|++++|...++++.+.
T Consensus 33 ~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~ 99 (235)
T TIGR03302 33 AEELYEEAKEALDSGDYTEAIKYFEALESRY-PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRL 99 (235)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 3444555555556666666666666655432 1111 23444555566666666666666666544
No 116
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.56 E-value=6.4e-05 Score=66.91 Aligned_cols=109 Identities=13% Similarity=0.068 Sum_probs=48.2
Q ss_pred CCCCcccHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCc-HhHHHHHHHHHHhcChhhHHH
Q 044770 142 SPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPN-EVSYCILATAHAVARLYTVAE 220 (464)
Q Consensus 142 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~li~~~~~~~~~~~a~ 220 (464)
..|++++|+..++.+...- +-|...+....+.+.+.++.++|.+.++.+... .|+ ....-.+..++.+.|++.+|+
T Consensus 318 ~~~~~d~A~~~l~~L~~~~-P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all~~g~~~eai 394 (484)
T COG4783 318 LAGQYDEALKLLQPLIAAQ-PDNPYYLELAGDILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQALLKGGKPQEAI 394 (484)
T ss_pred HhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHHhcCChHHHH
Confidence 3444555555555544331 222333333344445555555555555554443 333 223333444444555555555
Q ss_pred HHHHHHHhccCCCChhhHHHHHHHHHhhcChhhH
Q 044770 221 TYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDL 254 (464)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 254 (464)
.+++..... .+.|+..|..|..+|...|+..++
T Consensus 395 ~~L~~~~~~-~p~dp~~w~~LAqay~~~g~~~~a 427 (484)
T COG4783 395 RILNRYLFN-DPEDPNGWDLLAQAYAELGNRAEA 427 (484)
T ss_pred HHHHHHhhc-CCCCchHHHHHHHHHHHhCchHHH
Confidence 554444433 333444444444444444444443
No 117
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.56 E-value=0.00085 Score=63.81 Aligned_cols=171 Identities=12% Similarity=0.047 Sum_probs=108.7
Q ss_pred HHHHHHHhhcchHHHHHHHHHHHHcCCCCCCchhHHHHHHHHHhhcChHHHHHHhhhcCCCCCchhHHHHHHHHHHhhCc
Q 044770 31 HSINRLRKLQLNKRALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQGEKLFCCIPKDYQNELLYNNLVIACLDKGV 110 (464)
Q Consensus 31 ~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~li~~~~~~~~ 110 (464)
.+.-.....|-+++|+.+|.+..+ |..|=..|...|.+++|.++-+.-... .=..+|.....-+-..++
T Consensus 805 kvAvLAieLgMlEeA~~lYr~ckR----------~DLlNKlyQs~g~w~eA~eiAE~~DRi-HLr~Tyy~yA~~Lear~D 873 (1416)
T KOG3617|consen 805 KVAVLAIELGMLEEALILYRQCKR----------YDLLNKLYQSQGMWSEAFEIAETKDRI-HLRNTYYNYAKYLEARRD 873 (1416)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHH----------HHHHHHHHHhcccHHHHHHHHhhccce-ehhhhHHHHHHHHHhhcc
Confidence 334444567788888888887765 234445677788888888877654332 122455555555666777
Q ss_pred HHHHHHHHHHHH----------HcC---------CCCchhhHHHHHHHhcCCCCcccHHHHHHHHHhCCCCCChhhHHHH
Q 044770 111 IKLSLEYMKKMR----------VLG---------HSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHIL 171 (464)
Q Consensus 111 ~~~a~~~~~~m~----------~~~---------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 171 (464)
.+.|++.|++.- ... -..|...|.--...+-..|+.+.|+.+|....+ |-++
T Consensus 874 i~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~fs~ 944 (1416)
T KOG3617|consen 874 IEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD---------YFSM 944 (1416)
T ss_pred HHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh---------hhhh
Confidence 777777776432 111 011333444444445566777777777766554 4456
Q ss_pred HHHHHccCChhHHHHHHHHHHhCCCCCcHhHHHHHHHHHHhcChhhHHHHHHHHHH
Q 044770 172 MKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALE 227 (464)
Q Consensus 172 ~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 227 (464)
++..|-.|+.++|-.+-++- -|......+.+.|-..|++.+|..+|.+.+
T Consensus 945 VrI~C~qGk~~kAa~iA~es------gd~AAcYhlaR~YEn~g~v~~Av~FfTrAq 994 (1416)
T KOG3617|consen 945 VRIKCIQGKTDKAARIAEES------GDKAACYHLARMYENDGDVVKAVKFFTRAQ 994 (1416)
T ss_pred eeeEeeccCchHHHHHHHhc------ccHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 66667777777777666543 266677778888888999999998887764
No 118
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.53 E-value=3.3e-05 Score=75.79 Aligned_cols=129 Identities=12% Similarity=0.033 Sum_probs=76.5
Q ss_pred cChhchHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCCchhHHHHHHHHHhhcChHHHHHHhhhcCCC-CCch-------
Q 044770 24 VHRGEIFHSINRLRKLQLNKRALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQGEKLFCCIPKD-YQNE------- 95 (464)
Q Consensus 24 ~~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~------- 95 (464)
.+...+..++..+...+++++|.++.+...+..+ -....|-.+...+...++.+++..+ .+... ..+.
T Consensus 29 ~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P--~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~~~ve~ 104 (906)
T PRK14720 29 SKFKELDDLIDAYKSENLTDEAKDICEEHLKEHK--KSISALYISGILSLSRRPLNDSNLL--NLIDSFSQNLKWAIVEH 104 (906)
T ss_pred chHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC--cceehHHHHHHHHHhhcchhhhhhh--hhhhhcccccchhHHHH
Confidence 3455677889999899999999999998877432 2333444444467777777666555 32222 1111
Q ss_pred ------------hHHHHHHHHHHhhCcHHHHHHHHHHHHHcCCCCchhhHHHHHHHhcCCCCcccHHHHHHHHHh
Q 044770 96 ------------LLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKA 158 (464)
Q Consensus 96 ------------~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 158 (464)
.++..+..+|-+.|+.++|..+++++++.. +-|+.+.|.+...|... +.++|.+++.+...
T Consensus 105 ~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~ 177 (906)
T PRK14720 105 ICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYLKKAIY 177 (906)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHHHHHHH
Confidence 334444555555566666666666666554 33455555555555555 55555555555443
No 119
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.52 E-value=0.00013 Score=64.97 Aligned_cols=147 Identities=12% Similarity=-0.011 Sum_probs=108.3
Q ss_pred HHHhhcChhhHHHHHHHhccCCCCchhhHHHHHHHhhccCChHHHHHHHHHHHhccccCC-hhhHHHHHHHHHhcCChhH
Q 044770 244 LYGYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKA-TEQYNSVISVYCKNGFIDK 322 (464)
Q Consensus 244 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~li~~~~~~~~~~~ 322 (464)
.+...|+.+.|+..++.+....+.+..-+....+.+.+.++..+|.+.++.+.... |+ ...+-.+..+|.+.|++.+
T Consensus 315 ~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~--P~~~~l~~~~a~all~~g~~~e 392 (484)
T COG4783 315 QTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALD--PNSPLLQLNLAQALLKGGKPQE 392 (484)
T ss_pred HHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC--CCccHHHHHHHHHHHhcCChHH
Confidence 44567788888888888877777777677777788888888888888888888743 33 5566667788888888888
Q ss_pred HHHHHHHHHhCCCCccHHHHHHHHHHHHhcCChHHHHHHHHHhHHHHhhhhhcCCCCcHHHHHHHHHHHHhcCChhhHHH
Q 044770 323 ASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAEN 402 (464)
Q Consensus 323 a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 402 (464)
|+.++++.... .+-|+..|..|.++|...|+..++.....+. |...|+++.|..
T Consensus 393 ai~~L~~~~~~-~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~-------------------------~~~~G~~~~A~~ 446 (484)
T COG4783 393 AIRILNRYLFN-DPEDPNGWDLLAQAYAELGNRAEALLARAEG-------------------------YALAGRLEQAII 446 (484)
T ss_pred HHHHHHHHhhc-CCCCchHHHHHHHHHHHhCchHHHHHHHHHH-------------------------HHhCCCHHHHHH
Confidence 88888887765 3447788888888888888887776544443 666788888888
Q ss_pred HHHHHHHcCCCCcHHHH
Q 044770 403 LFEELKKANYTKYTFVY 419 (464)
Q Consensus 403 ~~~~m~~~~~~p~~~~~ 419 (464)
.+....+.. +++..+|
T Consensus 447 ~l~~A~~~~-~~~~~~~ 462 (484)
T COG4783 447 FLMRASQQV-KLGFPDW 462 (484)
T ss_pred HHHHHHHhc-cCCcHHH
Confidence 887777652 3444444
No 120
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.50 E-value=9.7e-05 Score=60.41 Aligned_cols=147 Identities=13% Similarity=0.028 Sum_probs=93.1
Q ss_pred HHHhcChhhHHHHHHHHHHhccCCCChhhHHHHHHHHHhhcChhhHHHHHHHhccCCCCchhhHHHHHHHh----hccCC
Q 044770 209 AHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSKSYVLAIEAF----GRIAQ 284 (464)
Q Consensus 209 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~----~~~g~ 284 (464)
.|++.+++++|++..... .+......=+..+.+..+.+.|.+.++.|.......+ .+.|..++ ...+.
T Consensus 117 i~~~~~~~deAl~~~~~~------~~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~ided~t--LtQLA~awv~la~ggek 188 (299)
T KOG3081|consen 117 IYMHDGDFDEALKALHLG------ENLEAAALNVQILLKMHRFDLAEKELKKMQQIDEDAT--LTQLAQAWVKLATGGEK 188 (299)
T ss_pred HhhcCCChHHHHHHHhcc------chHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHH--HHHHHHHHHHHhccchh
Confidence 355556666665555431 1112222223344455555566665555555333222 33333333 34567
Q ss_pred hHHHHHHHHHHHhccccCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCccHHHHHHHHHHHHhcCChHH-HHHHHH
Q 044770 285 VSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEE-GFKALE 363 (464)
Q Consensus 285 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~-a~~~~~ 363 (464)
+.+|.-+|++|.+ ..+|++.+.+....++...|++++|..++++...+... ++.+...++..-...|...+ ..+.+.
T Consensus 189 ~qdAfyifeE~s~-k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~-dpetL~Nliv~a~~~Gkd~~~~~r~l~ 266 (299)
T KOG3081|consen 189 IQDAFYIFEELSE-KTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAK-DPETLANLIVLALHLGKDAEVTERNLS 266 (299)
T ss_pred hhhHHHHHHHHhc-ccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCC-CHHHHHHHHHHHHHhCCChHHHHHHHH
Confidence 8899999999998 56788889999999999999999999999999987544 66777777766666666544 344555
Q ss_pred Hh
Q 044770 364 LG 365 (464)
Q Consensus 364 ~~ 365 (464)
+.
T Consensus 267 QL 268 (299)
T KOG3081|consen 267 QL 268 (299)
T ss_pred HH
Confidence 55
No 121
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.49 E-value=1.6e-05 Score=64.81 Aligned_cols=118 Identities=8% Similarity=-0.042 Sum_probs=53.4
Q ss_pred CcHHHHHHHHHHHHHcCCCCchhhHHHHHHHhcCCCCcccHHHHHHHHHhCCCCCChhhHHHHHHHH-HccCC--hhHHH
Q 044770 109 GVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIE-ANDHN--IEGLM 185 (464)
Q Consensus 109 ~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~--~~~a~ 185 (464)
++.++++..++...+.+ +.|...|..+...|...|++++|...|++..+.. +.+...+..+..++ ...|+ .++|.
T Consensus 53 ~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~A~ 130 (198)
T PRK10370 53 QTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNALLAYRQALQLR-GENAELYAALATVLYYQAGQHMTPQTR 130 (198)
T ss_pred hhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHHHH
Confidence 33444444444444432 3344445555555555555555555555544433 23344444444432 33333 24555
Q ss_pred HHHHHHHhCCCCCcHhHHHHHHHHHHhcChhhHHHHHHHHHHhc
Q 044770 186 KVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKS 229 (464)
Q Consensus 186 ~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 229 (464)
+++++..+.... +...+..+...+.+.|++++|+..|+++.+.
T Consensus 131 ~~l~~al~~dP~-~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l 173 (198)
T PRK10370 131 EMIDKALALDAN-EVTALMLLASDAFMQADYAQAIELWQKVLDL 173 (198)
T ss_pred HHHHHHHHhCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 555555444211 3344444444455555555555555555444
No 122
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.47 E-value=0.00016 Score=71.26 Aligned_cols=221 Identities=13% Similarity=0.017 Sum_probs=132.8
Q ss_pred CchhHHHHHHHHHhhcChHHHHHHhhhcCCCCCch-hHHHHHHHHHHhhCcHHHHHHHHHHHHHcCCCCchhhHHHHHHH
Q 044770 61 KELDYSYLLEFTIKNHGISQGEKLFCCIPKDYQNE-LLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIIL 139 (464)
Q Consensus 61 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~ 139 (464)
....+..|+..+...+++++|.++.+......|+. ..|-.+...+.+.++.+++..+ .++..
T Consensus 30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv-----------------~~l~~ 92 (906)
T PRK14720 30 KFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL-----------------NLIDS 92 (906)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh-----------------hhhhh
Confidence 44567777778878888888888887666655543 3333333455555654444433 23334
Q ss_pred hcCCCCcccHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCcHhHHHHHHHHHHhcChhhHH
Q 044770 140 NSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVA 219 (464)
Q Consensus 140 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a 219 (464)
.....++.-+..+.+.|.+. .-+...+..+..+|-+.|+.++|..+|+++.+.. +-|....|.+...|... +.++|
T Consensus 93 ~~~~~~~~~ve~~~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA 168 (906)
T PRK14720 93 FSQNLKWAIVEHICDKILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKA 168 (906)
T ss_pred cccccchhHHHHHHHHHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHH
Confidence 44444554444455555553 3344567778888888899999999998888876 34677788888888888 88888
Q ss_pred HHHHHHHHhccCCCChhhHHHHHHHHHhhcChhhHHHHHHHhccCCCCchhhHHHHHHHhhccCChHHHHHHHHHHHhcc
Q 044770 220 ETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVK 299 (464)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 299 (464)
..++.+.... +....++..+..+|..+....+.+...+..+.+.....- +
T Consensus 169 ~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~---------------~ 218 (906)
T PRK14720 169 ITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHR---------------E 218 (906)
T ss_pred HHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhh---------------c
Confidence 8888877554 445556777777777766654444333322222111110 1
Q ss_pred ccCChhhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 044770 300 QLKATEQYNSVISVYCKNGFIDKASGLLKEMSM 332 (464)
Q Consensus 300 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 332 (464)
...-+.++-.+-..|-..+++++++.+++...+
T Consensus 219 ~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~ 251 (906)
T PRK14720 219 FTRLVGLLEDLYEPYKALEDWDEVIYILKKILE 251 (906)
T ss_pred cchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHh
Confidence 111222344444555555566666666666655
No 123
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.46 E-value=4.5e-05 Score=74.04 Aligned_cols=177 Identities=10% Similarity=-0.063 Sum_probs=128.3
Q ss_pred chhHHHHHHHHHHhhCcHHHHHHHHHHHHHcCCCCc-hhhHHHHHHHhcCCCCcccHHHHHHHHHhCCCCCChhhHHHHH
Q 044770 94 NELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSIS-YLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILM 172 (464)
Q Consensus 94 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 172 (464)
+...+..|.......|.+++|..+++...+. .|| ......+...+.+.+++++|...+++..+.. +-+......+.
T Consensus 85 ~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~--~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~-p~~~~~~~~~a 161 (694)
T PRK15179 85 TELFQVLVARALEAAHRSDEGLAVWRGIHQR--FPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGG-SSSAREILLEA 161 (694)
T ss_pred cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC-CCCHHHHHHHH
Confidence 5788888999999999999999999999885 344 5667778888999999999999999998875 55566677788
Q ss_pred HHHHccCChhHHHHHHHHHHhCCCCCcHhHHHHHHHHHHhcChhhHHHHHHHHHHhccCCCChhhHHHHHHHHHhhcChh
Q 044770 173 KIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGK 252 (464)
Q Consensus 173 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 252 (464)
.++.+.|++++|..+|++....+ +-+..++..+..++...|+.++|...|+...+. ..+....|+..+ ++..
T Consensus 162 ~~l~~~g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~-~~~~~~~~~~~~------~~~~ 233 (694)
T PRK15179 162 KSWDEIGQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLDA-IGDGARKLTRRL------VDLN 233 (694)
T ss_pred HHHHHhcchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-hCcchHHHHHHH------HHHH
Confidence 88899999999999999998743 234778888888899999999999999988776 334444444332 2333
Q ss_pred hHHHHHHHhcc-----CCCCchhhHHHHHHHhhc
Q 044770 253 DLERIWATVQE-----LPNVRSKSYVLAIEAFGR 281 (464)
Q Consensus 253 ~a~~~~~~~~~-----~~~~~~~~~~~l~~~~~~ 281 (464)
.-...++.+.- +.+....+....|.-|.+
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (694)
T PRK15179 234 ADLAALRRLGVEGDGRDVPVSILVLEKMLQEIGR 267 (694)
T ss_pred HHHHHHHHcCcccccCCCceeeeeHHHHHHHHhh
Confidence 34445555443 222233344455555544
No 124
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.45 E-value=0.00098 Score=60.24 Aligned_cols=334 Identities=12% Similarity=0.010 Sum_probs=185.7
Q ss_pred ChhchHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCCc-hhHHHHHHHHHhhcChHHHHHHhhhcCCCCC-chhHHHHHH
Q 044770 25 HRGEIFHSINRLRKLQLNKRALEVMEWVIRERPYRPKE-LDYSYLLEFTIKNHGISQGEKLFCCIPKDYQ-NELLYNNLV 102 (464)
Q Consensus 25 ~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~li 102 (464)
+--.|..-..++...|++++|++=-...++ ..|+. ..|+....++.-.|++++|+.-|.+-.+..| +...++-+.
T Consensus 35 nhvlySnrsaa~a~~~~~~~al~da~k~~~---l~p~w~kgy~r~Gaa~~~lg~~~eA~~ay~~GL~~d~~n~~L~~gl~ 111 (539)
T KOG0548|consen 35 NHVLYSNRSAAYASLGSYEKALKDATKTRR---LNPDWAKGYSRKGAALFGLGDYEEAILAYSEGLEKDPSNKQLKTGLA 111 (539)
T ss_pred ccchhcchHHHHHHHhhHHHHHHHHHHHHh---cCCchhhHHHHhHHHHHhcccHHHHHHHHHHHhhcCCchHHHHHhHH
Confidence 444556677788899999999987777766 34553 4789999999999999999999999877744 566777777
Q ss_pred HHHHhhCcHHHH---HHHHHHHHHc---CCCCchhhHHHHHHHhcCC-------CCcccHHHHHHHHH--------hCC-
Q 044770 103 IACLDKGVIKLS---LEYMKKMRVL---GHSISYLVFNRLIILNSSP-------GRRKTIPNILRQMK--------ADK- 160 (464)
Q Consensus 103 ~~~~~~~~~~~a---~~~~~~m~~~---~~~~~~~~~~~l~~~~~~~-------~~~~~a~~~~~~~~--------~~~- 160 (464)
.++......... -.++..+... ........|..++...-+. .+.+......-.+. ..|
T Consensus 112 ~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~l~d~r~m~a~~~l~~~~~~~~~~~~~ 191 (539)
T KOG0548|consen 112 QAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLYLNDPRLMKADGQLKGVDELLFYASGI 191 (539)
T ss_pred HhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhcccccHHHHHHHHHHhcCcccccccccc
Confidence 766221000000 0000000000 0000011111111111100 00000000000000 000
Q ss_pred ------CCC----------------------ChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCcHhHHHHHHHHHHh
Q 044770 161 ------VAP----------------------HVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAV 212 (464)
Q Consensus 161 ------~~~----------------------~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~ 212 (464)
..| -..-...+.++.-+..+++.|.+-+....+.. -+..-++....+|..
T Consensus 192 ~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e 269 (539)
T KOG0548|consen 192 EILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLE 269 (539)
T ss_pred ccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHh
Confidence 000 01124456666666667777777776666542 233333444445666
Q ss_pred cChhhHHHHHHHHHHhccCCCC------hhhHHHHHHHHHhhcChhhHHHHHHHhccCC-CCc-----------------
Q 044770 213 ARLYTVAETYVEALEKSMTGNN------WSTLDVLIILYGYLAKGKDLERIWATVQELP-NVR----------------- 268 (464)
Q Consensus 213 ~~~~~~a~~~~~~~~~~~~~~~------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~----------------- 268 (464)
.|.+......-....+.|...- ...+..+..++.+.++++.+...+....... .++
T Consensus 270 ~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~ 349 (539)
T KOG0548|consen 270 RGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNAYTKREDYEGAIKYYQKALTEHRTPDLLSKLKEAEKALKEAER 349 (539)
T ss_pred ccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHH
Confidence 6655555444444433321110 1111223334455555666666655543311 111
Q ss_pred --------hhhHHHHHHHhhccCChHHHHHHHHHHHhccccCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcc-H
Q 044770 269 --------SKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPN-A 339 (464)
Q Consensus 269 --------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~ 339 (464)
..-...-...+.+.|++..|.+.|.++.+.. +-|...|..-..+|.+.|.+..|+.=.+..++. .|+ .
T Consensus 350 ~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~-P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL--~p~~~ 426 (539)
T KOG0548|consen 350 KAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRD-PEDARLYSNRAACYLKLGEYPEALKDAKKCIEL--DPNFI 426 (539)
T ss_pred HHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC-CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--CchHH
Confidence 1111122566788999999999999999855 568899999999999999999999988877774 443 4
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHhH
Q 044770 340 ITYRHLALGCFKSNLVEEGFKALELGM 366 (464)
Q Consensus 340 ~~~~~ll~~~~~~~~~~~a~~~~~~~~ 366 (464)
..|..=..++....+++.|.+.|++.+
T Consensus 427 kgy~RKg~al~~mk~ydkAleay~eal 453 (539)
T KOG0548|consen 427 KAYLRKGAALRAMKEYDKALEAYQEAL 453 (539)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555556666778888998888883
No 125
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.45 E-value=0.0011 Score=60.02 Aligned_cols=376 Identities=11% Similarity=0.043 Sum_probs=189.8
Q ss_pred cCccChhchHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCCchhHHHHHHHHHhhcChHHHHHHhhhcCCCCCchhHHHH
Q 044770 21 GFPVHRGEIFHSINRLRKLQLNKRALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQGEKLFCCIPKDYQNELLYNN 100 (464)
Q Consensus 21 g~~~~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 100 (464)
..|.|.+++..+++-+..+ ..+++.+.++++... ++.+...|..-+..-....+++...++|.+.....-+...|..
T Consensus 15 ~nP~di~sw~~lire~qt~-~~~~~R~~YEq~~~~--FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvLnlDLW~l 91 (656)
T KOG1914|consen 15 ENPYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNV--FPSSPRAWKLYIERELASKDFESVEKLFSRCLVKVLNLDLWKL 91 (656)
T ss_pred cCCccHHHHHHHHHHHccC-CHHHHHHHHHHHhcc--CCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhHhHHHH
Confidence 4567888888888887776 889999999999864 4556778888888888899999999999887765556777777
Q ss_pred HHHHHHhh-CcHHH----HHHHHHHHH-HcCCCCc-hhhHHHHHHHhc---------CCCCcccHHHHHHHHHhCCCCCC
Q 044770 101 LVIACLDK-GVIKL----SLEYMKKMR-VLGHSIS-YLVFNRLIILNS---------SPGRRKTIPNILRQMKADKVAPH 164 (464)
Q Consensus 101 li~~~~~~-~~~~~----a~~~~~~m~-~~~~~~~-~~~~~~l~~~~~---------~~~~~~~a~~~~~~~~~~~~~~~ 164 (464)
-++--.+. |+... ..+.|+-.. +.|+.+- -..|+..+..+- ...+++.+.+++++++...+.-=
T Consensus 92 Yl~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~nl 171 (656)
T KOG1914|consen 92 YLSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMHNL 171 (656)
T ss_pred HHHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCccccH
Confidence 77644332 22222 223333322 3343322 233444443322 23345566777777765321111
Q ss_pred hhhHHH------HHHH-------HHccCChhHHHHHHHHHHh--CCCCCcHhH---------------HHHHHHH-----
Q 044770 165 VSTFHI------LMKI-------EANDHNIEGLMKVYSDMKR--SEVEPNEVS---------------YCILATA----- 209 (464)
Q Consensus 165 ~~~~~~------l~~~-------~~~~~~~~~a~~~~~~m~~--~~~~p~~~~---------------~~~li~~----- 209 (464)
...|+- =|+. --+...+-.|.++++++.. +|......+ |-.+|.-
T Consensus 172 EkLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~wEksNp 251 (656)
T KOG1914|consen 172 EKLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKWEKSNP 251 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHHHhcCC
Confidence 111211 1111 0112334455555555532 221111111 2111111
Q ss_pred -----------------------HH--------------hcCh--------------hhHHHHHHHHHHhccCCCChhhH
Q 044770 210 -----------------------HA--------------VARL--------------YTVAETYVEALEKSMTGNNWSTL 238 (464)
Q Consensus 210 -----------------------~~--------------~~~~--------------~~~a~~~~~~~~~~~~~~~~~~~ 238 (464)
+. ..++ .+++..+++.....-..-+..+|
T Consensus 252 L~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly 331 (656)
T KOG1914|consen 252 LRTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLLY 331 (656)
T ss_pred cccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00 0000 11112222211111111111111
Q ss_pred HHHHHHHHhh---cChhhHHHHHHHhcc-CCCCchhhHHHHHHHhhccCChHHHHHHHHHHHhccccC-ChhhHHHHHHH
Q 044770 239 DVLIILYGYL---AKGKDLERIWATVQE-LPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLK-ATEQYNSVISV 313 (464)
Q Consensus 239 ~~l~~~~~~~---~~~~~a~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~ 313 (464)
..+...--.. +..+.....++.+.. .....+.+|..++..-.+..-+..|..+|.+..+.+..+ ++..+++++.-
T Consensus 332 ~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy 411 (656)
T KOG1914|consen 332 FALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEY 411 (656)
T ss_pred HHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHH
Confidence 1111000000 012222333333333 222233456666666666666777777777777665555 56666666665
Q ss_pred HHhcCChhHHHHHHHHHHhCCCCccH-HHHHHHHHHHHhcCChHHHHHHHHHhHHHHhhhhhcCCCCc--HHHHHHHHHH
Q 044770 314 YCKNGFIDKASGLLKEMSMNGCKPNA-ITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPW--LETTLSIIEI 390 (464)
Q Consensus 314 ~~~~~~~~~a~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~p~--~~~~~~li~~ 390 (464)
||. ++.+-|..+|+--... -+|. .--...+.-+.+.++-..+..+|+..+ ..++.|+ ..+|..++..
T Consensus 412 ~cs-kD~~~AfrIFeLGLkk--f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l-------~s~l~~~ks~~Iw~r~l~y 481 (656)
T KOG1914|consen 412 YCS-KDKETAFRIFELGLKK--FGDSPEYVLKYLDFLSHLNDDNNARALFERVL-------TSVLSADKSKEIWDRMLEY 481 (656)
T ss_pred Hhc-CChhHHHHHHHHHHHh--cCCChHHHHHHHHHHHHhCcchhHHHHHHHHH-------hccCChhhhHHHHHHHHHH
Confidence 554 4556677777654442 2232 223344555566677777777777763 3344443 3567777776
Q ss_pred HHhcCChhhHHHHHHHHHH
Q 044770 391 FAEKGDVGNAENLFEELKK 409 (464)
Q Consensus 391 ~~~~g~~~~A~~~~~~m~~ 409 (464)
-..-|+...+.++-+++..
T Consensus 482 ES~vGdL~si~~lekR~~~ 500 (656)
T KOG1914|consen 482 ESNVGDLNSILKLEKRRFT 500 (656)
T ss_pred HHhcccHHHHHHHHHHHHH
Confidence 6777777777776665554
No 126
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.44 E-value=0.00014 Score=70.78 Aligned_cols=183 Identities=6% Similarity=0.066 Sum_probs=137.9
Q ss_pred CCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCc-HhHHHHHHHHHHhcChhhHHHHHHHHHHhccCCCChhhH
Q 044770 160 KVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPN-EVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTL 238 (464)
Q Consensus 160 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 238 (464)
..+.+...+-.|.....+.|.+++|..+++...+. .|| ......+...+.+.+++++|....++.... -+.+....
T Consensus 81 ~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~--~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~-~p~~~~~~ 157 (694)
T PRK15179 81 RYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQR--FPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSG-GSSSAREI 157 (694)
T ss_pred hccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhc-CCCCHHHH
Confidence 34667888888999999999999999999999876 565 455677888899999999999999999886 34456777
Q ss_pred HHHHHHHHhhcChhhHHHHHHHhccCCCCchhhHHHHHHHhhccCChHHHHHHHHHHHhccccCChhhHHHHHHHHHhcC
Q 044770 239 DVLIILYGYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNG 318 (464)
Q Consensus 239 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~ 318 (464)
..+..++...|++++|..+|+++....+.+..++..+...+-..|+.++|...|+...+. ..+....|+..+.
T Consensus 158 ~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~-~~~~~~~~~~~~~------ 230 (694)
T PRK15179 158 LLEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDA-IGDGARKLTRRLV------ 230 (694)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-hCcchHHHHHHHH------
Confidence 788888999999999999999998866677788999999999999999999999998873 3344455655443
Q ss_pred ChhHHHHHHHHHHhCC----CCccHHHHHHHHHHHHhc
Q 044770 319 FIDKASGLLKEMSMNG----CKPNAITYRHLALGCFKS 352 (464)
Q Consensus 319 ~~~~a~~~~~~m~~~g----~~p~~~~~~~ll~~~~~~ 352 (464)
+...-..+++++.-.+ ...........|.-+.+.
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (694)
T PRK15179 231 DLNADLAALRRLGVEGDGRDVPVSILVLEKMLQEIGRR 268 (694)
T ss_pred HHHHHHHHHHHcCcccccCCCceeeeeHHHHHHHHhhc
Confidence 3344556666665433 222334445555555443
No 127
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.44 E-value=0.00021 Score=58.53 Aligned_cols=237 Identities=11% Similarity=-0.036 Sum_probs=124.3
Q ss_pred HHHHHHhhcchHHHHHHHHHHHHcCCCCCCchhHHHHHHHHHhhcChHHHHHHhhhcCCC-CCchhHHHHHHHHHHhhCc
Q 044770 32 SINRLRKLQLNKRALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQGEKLFCCIPKD-YQNELLYNNLVIACLDKGV 110 (464)
Q Consensus 32 ~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~li~~~~~~~~ 110 (464)
-++-+.-.|++..++..-...... +-+...-..+-+.|...|+.....+ +++.. .|.......+......-++
T Consensus 14 ~iRn~fY~Gnyq~~ine~~~~~~~---~~~~e~d~y~~raylAlg~~~~~~~---eI~~~~~~~lqAvr~~a~~~~~e~~ 87 (299)
T KOG3081|consen 14 NIRNYFYLGNYQQCINEAEKFSSS---KTDVELDVYMYRAYLALGQYQIVIS---EIKEGKATPLQAVRLLAEYLELESN 87 (299)
T ss_pred HHHHHHHhhHHHHHHHHHHhhccc---cchhHHHHHHHHHHHHccccccccc---ccccccCChHHHHHHHHHHhhCcch
Confidence 345555667777776665554331 2233344445556666666543332 22222 1333333333333333344
Q ss_pred HHHHHH-HHHHHHHcCCCCchhhHHHHHHHhcCCCCcccHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhHHHHHHH
Q 044770 111 IKLSLE-YMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYS 189 (464)
Q Consensus 111 ~~~a~~-~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 189 (464)
-++-+. +.+.+.......+......-...|++.|++++|.+...... ...... .=...+.+..+++-|.+.++
T Consensus 88 ~~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~----~lE~~A--l~VqI~lk~~r~d~A~~~lk 161 (299)
T KOG3081|consen 88 KKSILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE----NLEAAA--LNVQILLKMHRFDLAEKELK 161 (299)
T ss_pred hHHHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc----hHHHHH--HHHHHHHHHHHHHHHHHHHH
Confidence 333333 33444433333332333333445777777777777766521 222222 22344556677777777777
Q ss_pred HHHhCCCCCcHhHHHHHHHHHHh----cChhhHHHHHHHHHHhccCCCChhhHHHHHHHHHhhcChhhHHHHHHHhccCC
Q 044770 190 DMKRSEVEPNEVSYCILATAHAV----ARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELP 265 (464)
Q Consensus 190 ~m~~~~~~p~~~~~~~li~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 265 (464)
+|.+- -+..|.+.|..++.+ .+...+|.-+|++|-++ .+|++.+.+-...++...+++++|+.+++......
T Consensus 162 ~mq~i---ded~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd 237 (299)
T KOG3081|consen 162 KMQQI---DEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKD 237 (299)
T ss_pred HHHcc---chHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhcc
Confidence 77753 255666666666553 34566777777777654 56666666666666666666666666666665544
Q ss_pred CCchhhHHHHHHHhhccCC
Q 044770 266 NVRSKSYVLAIEAFGRIAQ 284 (464)
Q Consensus 266 ~~~~~~~~~l~~~~~~~g~ 284 (464)
..++.+...++..-...|.
T Consensus 238 ~~dpetL~Nliv~a~~~Gk 256 (299)
T KOG3081|consen 238 AKDPETLANLIVLALHLGK 256 (299)
T ss_pred CCCHHHHHHHHHHHHHhCC
Confidence 4444444444444444443
No 128
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.43 E-value=8.2e-06 Score=62.88 Aligned_cols=98 Identities=8% Similarity=-0.086 Sum_probs=52.9
Q ss_pred ChhchHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCCchhHHHHHHHHHhhcChHHHHHHhhhcCCC-CCchhHHHHHHH
Q 044770 25 HRGEIFHSINRLRKLQLNKRALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQGEKLFCCIPKD-YQNELLYNNLVI 103 (464)
Q Consensus 25 ~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~li~ 103 (464)
++..+......+...|++++|...|+...... +.+...|..+..++...|++++|...|++.... +.+...+..+..
T Consensus 23 ~p~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~ 100 (144)
T PRK15359 23 DPETVYASGYASWQEGDYSRAVIDFSWLVMAQ--PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGV 100 (144)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHH
Confidence 33334444555555566666666666555422 234445555555555566666666666555544 224455555555
Q ss_pred HHHhhCcHHHHHHHHHHHHHc
Q 044770 104 ACLDKGVIKLSLEYMKKMRVL 124 (464)
Q Consensus 104 ~~~~~~~~~~a~~~~~~m~~~ 124 (464)
++...|++++|+..|+...+.
T Consensus 101 ~l~~~g~~~eAi~~~~~Al~~ 121 (144)
T PRK15359 101 CLKMMGEPGLAREAFQTAIKM 121 (144)
T ss_pred HHHHcCCHHHHHHHHHHHHHh
Confidence 555556666666665555553
No 129
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.43 E-value=0.00035 Score=56.86 Aligned_cols=185 Identities=15% Similarity=0.124 Sum_probs=126.2
Q ss_pred cCChhHHHHHHHHHHh---CC-CCCcHhH-HHHHHHHHHhcChhhHHHHHHHHHHhccCCCChhhHHHHHHHHHhhcChh
Q 044770 178 DHNIEGLMKVYSDMKR---SE-VEPNEVS-YCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGK 252 (464)
Q Consensus 178 ~~~~~~a~~~~~~m~~---~~-~~p~~~~-~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 252 (464)
..+.++.++++.++.. .| ..++..+ |..++-+....|+.+.|...++.+... ++.+..+...-...+-..|.++
T Consensus 25 ~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~-fp~S~RV~~lkam~lEa~~~~~ 103 (289)
T KOG3060|consen 25 VRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDR-FPGSKRVGKLKAMLLEATGNYK 103 (289)
T ss_pred ccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHh-CCCChhHHHHHHHHHHHhhchh
Confidence 4556677777766653 23 4455443 455666667778888888888877665 3333333333333455567888
Q ss_pred hHHHHHHHhccCCCCchhhHHHHHHHhhccCChHHHHHHHHHHHhccccCChhhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 044770 253 DLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSM 332 (464)
Q Consensus 253 ~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 332 (464)
+|.++++.+.+..+.+..++-.=+...-..|+.-+|++-+....+ .+.-|...|.-+...|...|++++|.-.++++.-
T Consensus 104 ~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~-~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll 182 (289)
T KOG3060|consen 104 EAIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLD-KFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLL 182 (289)
T ss_pred hHHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHH-HhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHH
Confidence 888888888887777777777666666667777788888877777 4566888899999999999999999999988887
Q ss_pred CCCCc-cHHHHHHHHHHHHhc---CChHHHHHHHHHhH
Q 044770 333 NGCKP-NAITYRHLALGCFKS---NLVEEGFKALELGM 366 (464)
Q Consensus 333 ~g~~p-~~~~~~~ll~~~~~~---~~~~~a~~~~~~~~ 366 (464)
+.| ++..+..+...+... .+.+.+..+++.++
T Consensus 183 --~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~al 218 (289)
T KOG3060|consen 183 --IQPFNPLYFQRLAEVLYTQGGAENLELARKYYERAL 218 (289)
T ss_pred --cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 445 444455555554433 35667788888874
No 130
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.42 E-value=6.2e-05 Score=61.43 Aligned_cols=99 Identities=10% Similarity=0.006 Sum_probs=47.9
Q ss_pred ChhhHHHHHHHHHhhcChhhHHHHHHHhccCCCCchhhHHHHHHHh-hccCC--hHHHHHHHHHHHhccccCChhhHHHH
Q 044770 234 NWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSKSYVLAIEAF-GRIAQ--VSRAEELWLEMQSVKQLKATEQYNSV 310 (464)
Q Consensus 234 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~--~~~a~~~~~~~~~~~~~~~~~~~~~l 310 (464)
+...|..+...|...|+++.|...++......+.+...+..+..++ ...|+ .++|.+++++..+.. +-+...+..+
T Consensus 72 ~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~d-P~~~~al~~L 150 (198)
T PRK10370 72 NSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALD-ANEVTALMLL 150 (198)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhC-CCChhHHHHH
Confidence 3444444444444444444444444444443444444444444432 34444 355555555555522 2244455555
Q ss_pred HHHHHhcCChhHHHHHHHHHHhC
Q 044770 311 ISVYCKNGFIDKASGLLKEMSMN 333 (464)
Q Consensus 311 i~~~~~~~~~~~a~~~~~~m~~~ 333 (464)
...+...|++++|+..|+++.+.
T Consensus 151 A~~~~~~g~~~~Ai~~~~~aL~l 173 (198)
T PRK10370 151 ASDAFMQADYAQAIELWQKVLDL 173 (198)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhh
Confidence 55555555555555555555543
No 131
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.36 E-value=1.4e-05 Score=61.67 Aligned_cols=92 Identities=4% Similarity=-0.175 Sum_probs=57.9
Q ss_pred HHHHHHHhhcChhhHHHHHHHhccCCCCchhhHHHHHHHhhccCChHHHHHHHHHHHhccccCChhhHHHHHHHHHhcCC
Q 044770 240 VLIILYGYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGF 319 (464)
Q Consensus 240 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~ 319 (464)
.....+...|++++|...++......+.+...+..+..++...|++++|...|+..... .+.+...+..+..++...|+
T Consensus 29 ~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l-~p~~~~a~~~lg~~l~~~g~ 107 (144)
T PRK15359 29 ASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALML-DASHPEPVYQTGVCLKMMGE 107 (144)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc-CCCCcHHHHHHHHHHHHcCC
Confidence 34445555555555665555555555555556666666666677777777777766663 23456666666667777777
Q ss_pred hhHHHHHHHHHHh
Q 044770 320 IDKASGLLKEMSM 332 (464)
Q Consensus 320 ~~~a~~~~~~m~~ 332 (464)
+++|...|+...+
T Consensus 108 ~~eAi~~~~~Al~ 120 (144)
T PRK15359 108 PGLAREAFQTAIK 120 (144)
T ss_pred HHHHHHHHHHHHH
Confidence 7777777777666
No 132
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.35 E-value=8.7e-07 Score=49.44 Aligned_cols=33 Identities=39% Similarity=0.709 Sum_probs=29.3
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcc
Q 044770 306 QYNSVISVYCKNGFIDKASGLLKEMSMNGCKPN 338 (464)
Q Consensus 306 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~ 338 (464)
+||++|.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 688899999999999999999999998888887
No 133
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.34 E-value=8.7e-07 Score=49.45 Aligned_cols=34 Identities=24% Similarity=0.305 Sum_probs=28.9
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCcH
Q 044770 383 TTLSIIEIFAEKGDVGNAENLFEELKKANYTKYT 416 (464)
Q Consensus 383 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~ 416 (464)
+|++++.+|++.|++++|.++|++|.+.|+.||.
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 6888888888888888888888888888888873
No 134
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.34 E-value=0.0012 Score=64.24 Aligned_cols=55 Identities=7% Similarity=0.020 Sum_probs=29.0
Q ss_pred hhHHHHHHHHHhhcChHHHHHHhhhcCCC-CCchhHHHHHHHHHHhhCcHHHHHHH
Q 044770 63 LDYSYLLEFTIKNHGISQGEKLFCCIPKD-YQNELLYNNLVIACLDKGVIKLSLEY 117 (464)
Q Consensus 63 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~li~~~~~~~~~~~a~~~ 117 (464)
..|..|...|....+...|.+.|+...+. ..+...+......|+...+++.|..+
T Consensus 493 paf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I 548 (1238)
T KOG1127|consen 493 PAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEI 548 (1238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHH
Confidence 34555555555555555555555555444 22344555555555555555555555
No 135
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.28 E-value=0.00094 Score=54.44 Aligned_cols=188 Identities=12% Similarity=0.025 Sum_probs=142.1
Q ss_pred cChhhHHHHHHHHHHhc---c-CCCCh-hhHHHHHHHHHhhcChhhHHHHHHHhccCCCCchhhHHHHHHHhhccCChHH
Q 044770 213 ARLYTVAETYVEALEKS---M-TGNNW-STLDVLIILYGYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSR 287 (464)
Q Consensus 213 ~~~~~~a~~~~~~~~~~---~-~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 287 (464)
..+.++..+++.++... | ..++. ..|..++-+....|+.+.|...++.+....+.+..+-..-...+-..|++++
T Consensus 25 ~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~ 104 (289)
T KOG3060|consen 25 VRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKE 104 (289)
T ss_pred ccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhh
Confidence 45667777777776432 3 44443 4566677788889999999999999988665555444433445566899999
Q ss_pred HHHHHHHHHhccccCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCccHHHHHHHHHHHHhcCChHHHHHHHHHhHH
Q 044770 288 AEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMK 367 (464)
Q Consensus 288 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 367 (464)
|.++++.+.+.. +.|..++-.=+...-..|+.-+|++-+.+..+. +.-|...|.-+...|...|+++.|.-.+++++
T Consensus 105 A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~l- 181 (289)
T KOG3060|consen 105 AIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELL- 181 (289)
T ss_pred HHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHH-
Confidence 999999999844 557778877777777888888999988888876 66699999999999999999999999999994
Q ss_pred HHhhhhhcCCCCc-HHHHHHHHHHHHhcC---ChhhHHHHHHHHHHcC
Q 044770 368 LITTKKVRSSTPW-LETTLSIIEIFAEKG---DVGNAENLFEELKKAN 411 (464)
Q Consensus 368 ~~~~~~~~~~~p~-~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~~ 411 (464)
-+.|. ...+..+.+.+.-.| +.+-|.+.|.+..+..
T Consensus 182 --------l~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~ 221 (289)
T KOG3060|consen 182 --------LIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLN 221 (289)
T ss_pred --------HcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhC
Confidence 34554 344456666665555 4667888888888754
No 136
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.28 E-value=1.6e-06 Score=47.95 Aligned_cols=33 Identities=36% Similarity=0.548 Sum_probs=27.1
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCc
Q 044770 305 EQYNSVISVYCKNGFIDKASGLLKEMSMNGCKP 337 (464)
Q Consensus 305 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p 337 (464)
.+|+.++.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 478888888888888888888888888888776
No 137
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.26 E-value=1.9e-06 Score=47.61 Aligned_cols=33 Identities=27% Similarity=0.399 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCC
Q 044770 382 ETTLSIIEIFAEKGDVGNAENLFEELKKANYTK 414 (464)
Q Consensus 382 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p 414 (464)
.+|+.++.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 478888888888888888888888888888876
No 138
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.26 E-value=0.00048 Score=66.76 Aligned_cols=155 Identities=10% Similarity=-0.085 Sum_probs=75.9
Q ss_pred hhhHHHHHHHhhccCChHHHHHHHHHHHhccccCChhhHHHHHHHHHhcCChhHHHHHHHHH--H--hCCCCccHHHHHH
Q 044770 269 SKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEM--S--MNGCKPNAITYRH 344 (464)
Q Consensus 269 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m--~--~~g~~p~~~~~~~ 344 (464)
..+|..+...+....+++.|...|...... .+.|...|-.........|+.-++..+|..- . ..|-.|+..-+..
T Consensus 850 ~~~W~NlgvL~l~n~d~E~A~~af~~~qSL-dP~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c 928 (1238)
T KOG1127|consen 850 HCQWLNLGVLVLENQDFEHAEPAFSSVQSL-DPLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLC 928 (1238)
T ss_pred hhheeccceeEEecccHHHhhHHHHhhhhc-CchhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHH
Confidence 334444445555666777777777766652 2335556655555555667777777777652 1 1233333333322
Q ss_pred HHHHHHhcCChHHHHHHHHHhHHHH--hhhhhcCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHHHc-CCCCcHHHHHH
Q 044770 345 LALGCFKSNLVEEGFKALELGMKLI--TTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKA-NYTKYTFVYNT 421 (464)
Q Consensus 345 ll~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~p~~~~~~~ 421 (464)
...-....|+.++-+...+.+.... ...--.+.+.....|.+.....-+.+...+|.+...+...- ..+-+...||.
T Consensus 929 ~te~h~~Ng~~e~~I~t~~ki~sAs~al~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~RliglLe~k~d~sqynv 1008 (1238)
T KOG1127|consen 929 ATEIHLQNGNIEESINTARKISSASLALSYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRLIGLLELKLDESQYNV 1008 (1238)
T ss_pred HHHHHHhccchHHHHHHhhhhhhhHHHHHHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 2223344455544433333321110 00011233334556666666666677777776666554310 01134455665
Q ss_pred HHH
Q 044770 422 LIK 424 (464)
Q Consensus 422 li~ 424 (464)
+..
T Consensus 1009 ak~ 1011 (1238)
T KOG1127|consen 1009 AKP 1011 (1238)
T ss_pred hhh
Confidence 433
No 139
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.25 E-value=3.9e-05 Score=58.76 Aligned_cols=87 Identities=7% Similarity=0.003 Sum_probs=40.7
Q ss_pred HHhhcChhhHHHHHHHhccCCCCchhhHHHHHHHhhccCChHHHHHHHHHHHhccccCChhhHHHHHHHHHhcCChhHHH
Q 044770 245 YGYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKAS 324 (464)
Q Consensus 245 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~ 324 (464)
+...|++++|.+.++.+....+.+...+..+...+...|++++|...++...+.. +.+...+..+...+...|++++|.
T Consensus 27 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~g~~~~A~ 105 (135)
T TIGR02552 27 LYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAAECLLALGEPESAL 105 (135)
T ss_pred HHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHHcCCHHHHH
Confidence 3333344444444433333333333344444555555555555555555544422 223444444555555555555555
Q ss_pred HHHHHHHh
Q 044770 325 GLLKEMSM 332 (464)
Q Consensus 325 ~~~~~m~~ 332 (464)
..|+...+
T Consensus 106 ~~~~~al~ 113 (135)
T TIGR02552 106 KALDLAIE 113 (135)
T ss_pred HHHHHHHH
Confidence 55555554
No 140
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.23 E-value=2.8e-05 Score=59.55 Aligned_cols=93 Identities=8% Similarity=-0.044 Sum_probs=39.8
Q ss_pred HHHHHHHHhhCcHHHHHHHHHHHHHcCCCCchhhHHHHHHHhcCCCCcccHHHHHHHHHhCCCCCChhhHHHHHHHHHcc
Q 044770 99 NNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEAND 178 (464)
Q Consensus 99 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 178 (464)
..+...+...|++++|.+.|+.....+ +.+...+..+...+...|+++.|...+++..+.+ +.+...+..+...+...
T Consensus 21 ~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~ 98 (135)
T TIGR02552 21 YALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAAECLLAL 98 (135)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHHc
Confidence 333344444444444444444444432 2233344444444444444444444444444332 22333333444444444
Q ss_pred CChhHHHHHHHHHHh
Q 044770 179 HNIEGLMKVYSDMKR 193 (464)
Q Consensus 179 ~~~~~a~~~~~~m~~ 193 (464)
|++++|...|+...+
T Consensus 99 g~~~~A~~~~~~al~ 113 (135)
T TIGR02552 99 GEPESALKALDLAIE 113 (135)
T ss_pred CCHHHHHHHHHHHHH
Confidence 444444444444443
No 141
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.20 E-value=0.0068 Score=58.48 Aligned_cols=73 Identities=15% Similarity=0.139 Sum_probs=49.5
Q ss_pred HHHHHHHHHhcCChh---hHHHHHHHHHHcCCCCc-HHHHHHHHHHHHHcCCC--hhHHHHHHHhCCCCCCHHHHHHHHH
Q 044770 384 TLSIIEIFAEKGDVG---NAENLFEELKKANYTKY-TFVYNTLIKAYVKAKIN--DPNLLRRMILGGARPDAETYSLLKL 457 (464)
Q Consensus 384 ~~~li~~~~~~g~~~---~A~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~--a~~~~~~m~~~~~~p~~~t~~~L~~ 457 (464)
-+.|++.+-+.++.. +|+-+++.-.... |. ..+--.+|+.|+--|-. |.++|+.|--.+|+-|..-|.++-.
T Consensus 439 v~~Lid~~rktnd~~~l~eaI~LLE~glt~s--~hnf~~KLlLiriY~~lGa~p~a~~~y~tLdIK~IQ~DTlgh~~~~~ 516 (932)
T KOG2053|consen 439 VNHLIDLWRKTNDLTDLFEAITLLENGLTKS--PHNFQTKLLLIRIYSYLGAFPDAYELYKTLDIKNIQTDTLGHLIFRR 516 (932)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHHHhhcC--CccHHHHHHHHHHHHHhcCChhHHHHHHhcchHHhhhccchHHHHHH
Confidence 467888898888865 4444454444322 33 33455788899888853 8888988888888888777766544
Q ss_pred H
Q 044770 458 A 458 (464)
Q Consensus 458 ~ 458 (464)
+
T Consensus 517 ~ 517 (932)
T KOG2053|consen 517 A 517 (932)
T ss_pred H
Confidence 4
No 142
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.18 E-value=0.0002 Score=55.39 Aligned_cols=125 Identities=15% Similarity=0.142 Sum_probs=83.0
Q ss_pred HHHHHHHhhccCChHHHHHHHHHHHhccccCC---hhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCccH--HHHHHHH
Q 044770 272 YVLAIEAFGRIAQVSRAEELWLEMQSVKQLKA---TEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNA--ITYRHLA 346 (464)
Q Consensus 272 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~--~~~~~ll 346 (464)
|..++..+ ..++...+...++.+.+.. +.+ ....-.+...+...|++++|...|+........|+. .....+.
T Consensus 15 y~~~~~~~-~~~~~~~~~~~~~~l~~~~-~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA 92 (145)
T PF09976_consen 15 YEQALQAL-QAGDPAKAEAAAEQLAKDY-PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLA 92 (145)
T ss_pred HHHHHHHH-HCCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHH
Confidence 44555555 3677788888888877743 222 122333456777888888888888888886533322 2334456
Q ss_pred HHHHhcCChHHHHHHHHHhHHHHhhhhhcCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHH
Q 044770 347 LGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEEL 407 (464)
Q Consensus 347 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 407 (464)
..+...|++++|+..++.. ..... ....+....+.|.+.|++++|...|+..
T Consensus 93 ~~~~~~~~~d~Al~~L~~~-------~~~~~--~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 93 RILLQQGQYDEALATLQQI-------PDEAF--KALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHcCCHHHHHHHHHhc-------cCcch--HHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 6777888888888888765 32333 3445567888888889999888888753
No 143
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=98.16 E-value=6.6e-05 Score=67.65 Aligned_cols=124 Identities=14% Similarity=0.086 Sum_probs=85.2
Q ss_pred CCCCchhhHHHHHHHhcCCCCcccHHHHHHHHHhC--CCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCcHhH
Q 044770 125 GHSISYLVFNRLIILNSSPGRRKTIPNILRQMKAD--KVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVS 202 (464)
Q Consensus 125 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~ 202 (464)
+.+.+......+++.+....+++.+..++...... ....-..|..++++.|.+.|..+.++.+++.=...|+-||..+
T Consensus 61 ~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s 140 (429)
T PF10037_consen 61 KKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFS 140 (429)
T ss_pred CCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhh
Confidence 34455666666777777777777777777776653 2222233455777777777777777777777777777777777
Q ss_pred HHHHHHHHHhcChhhHHHHHHHHHHhccCCCChhhHHHHHHHHHhh
Q 044770 203 YCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYL 248 (464)
Q Consensus 203 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 248 (464)
++.+|..+.+.|++..|.++...|...+...+..|+...+.+|.+.
T Consensus 141 ~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 141 FNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 7777777777777777777777776666666666666666666555
No 144
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.13 E-value=0.0097 Score=57.50 Aligned_cols=200 Identities=11% Similarity=0.053 Sum_probs=117.8
Q ss_pred hHHHHHHH--HhhcchHHHHHHHHHHHHcCCCCCCchhHHHHHHHHHhhcChHHHHHHhhhcCCCCCchhHHHHHHHHHH
Q 044770 29 IFHSINRL--RKLQLNKRALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQGEKLFCCIPKDYQNELLYNNLVIACL 106 (464)
Q Consensus 29 ~~~~l~~~--~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~li~~~~ 106 (464)
+..++.++ .+.|+.++|..+++...... ..|..|...+-..|...++.++|..++++.....|+......+..+|.
T Consensus 44 ~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~--~~D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~~P~eell~~lFmayv 121 (932)
T KOG2053|consen 44 YAKVLKALSLFRLGKGDEALKLLEALYGLK--GTDDLTLQFLQNVYRDLGKLDEAVHLYERANQKYPSEELLYHLFMAYV 121 (932)
T ss_pred HHHHHHHHHHHHhcCchhHHHHHhhhccCC--CCchHHHHHHHHHHHHHhhhhHHHHHHHHHHhhCCcHHHHHHHHHHHH
Confidence 33444443 47788888887777765422 237778888888888888888888888888887777666667777777
Q ss_pred hhCcHHHHHHHHHHHHHcCCCCchhhHHHHHHHhcCCC-C---------cccHHHHHHHHHhCC-CCCChhhHHHHHHHH
Q 044770 107 DKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPG-R---------RKTIPNILRQMKADK-VAPHVSTFHILMKIE 175 (464)
Q Consensus 107 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~-~---------~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~ 175 (464)
+.+++.+-.+.=-+|-+. .+-....|=++++.....- . ..-|.+.++.+.+.+ -.-+..-...-...+
T Consensus 122 R~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL 200 (932)
T KOG2053|consen 122 REKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPILLALAEKMVQKLLEKKGKIESEAEIILYLLIL 200 (932)
T ss_pred HHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccchhHHHHHHHHHHHhccCCccchHHHHHHHHHHH
Confidence 777776544443333332 3333344333444333211 1 123555566665543 111222222333445
Q ss_pred HccCChhHHHHHHH-HHHhCCCCCcHhHHHHHHHHHHhcChhhHHHHHHHHHHhccC
Q 044770 176 ANDHNIEGLMKVYS-DMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMT 231 (464)
Q Consensus 176 ~~~~~~~~a~~~~~-~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~ 231 (464)
...|++++|++++. ...+.-..-+...-+--+..+...++|.+..++-.++...|.
T Consensus 201 ~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~~ 257 (932)
T KOG2053|consen 201 ELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKGN 257 (932)
T ss_pred HhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhCC
Confidence 56788888888883 333332233333444555666777788887777777776653
No 145
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.12 E-value=7.9e-05 Score=66.84 Aligned_cols=126 Identities=10% Similarity=0.033 Sum_probs=101.9
Q ss_pred hhHHHHHHHHHHhhCcHHHHHHHHHHHHHcCCCCchhhHHHHHHHhcCCCCcccHHHHHHHHHhCCCCCChhhHHHHHHH
Q 044770 95 ELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKI 174 (464)
Q Consensus 95 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 174 (464)
...-..|+..+...++++.|+.+|+++.+.. |+ ....+++.+...++-.+|.+++++..+.. +.+......-...
T Consensus 169 NyLv~~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~f 243 (395)
T PF09295_consen 169 NYLVDTLLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEF 243 (395)
T ss_pred hHHHHHHHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 3445667777788899999999999999864 44 44457778878888889999999988653 5566777777788
Q ss_pred HHccCChhHHHHHHHHHHhCCCCCc-HhHHHHHHHHHHhcChhhHHHHHHHHHH
Q 044770 175 EANDHNIEGLMKVYSDMKRSEVEPN-EVSYCILATAHAVARLYTVAETYVEALE 227 (464)
Q Consensus 175 ~~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~li~~~~~~~~~~~a~~~~~~~~ 227 (464)
+.+.++++.|+++.+++.+. .|+ -.+|..|..+|.+.|+++.|+..+..+.
T Consensus 244 Ll~k~~~~lAL~iAk~av~l--sP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 244 LLSKKKYELALEIAKKAVEL--SPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred HHhcCCHHHHHHHHHHHHHh--CchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 99999999999999999876 555 4589999999999999999998888764
No 146
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=98.10 E-value=4.7e-05 Score=53.49 Aligned_cols=78 Identities=19% Similarity=0.195 Sum_probs=67.5
Q ss_pred HHHHHhhccCChHHHHHHHHHHHhccc-cCChhhHHHHHHHHHhcC--------ChhHHHHHHHHHHhCCCCccHHHHHH
Q 044770 274 LAIEAFGRIAQVSRAEELWLEMQSVKQ-LKATEQYNSVISVYCKNG--------FIDKASGLLKEMSMNGCKPNAITYRH 344 (464)
Q Consensus 274 ~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~li~~~~~~~--------~~~~a~~~~~~m~~~g~~p~~~~~~~ 344 (464)
..|..+...+++...-.+|+.++..|+ .|++.+|+.++.+.++.. +....+.+|++|+..+++|+..||+.
T Consensus 30 ~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYni 109 (120)
T PF08579_consen 30 DNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNI 109 (120)
T ss_pred HHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHH
Confidence 446666667999999999999999999 899999999999988753 34567889999999999999999999
Q ss_pred HHHHHHh
Q 044770 345 LALGCFK 351 (464)
Q Consensus 345 ll~~~~~ 351 (464)
++..+.+
T Consensus 110 vl~~Llk 116 (120)
T PF08579_consen 110 VLGSLLK 116 (120)
T ss_pred HHHHHHH
Confidence 9998765
No 147
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=98.08 E-value=6.5e-05 Score=67.70 Aligned_cols=122 Identities=14% Similarity=0.120 Sum_probs=87.6
Q ss_pred CCCChhhHHHHHHHHHhhcChhhHHHHHHHhccCCC---CchhhHHHHHHHhhccCChHHHHHHHHHHHhccccCChhhH
Q 044770 231 TGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPN---VRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQY 307 (464)
Q Consensus 231 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 307 (464)
.+.+......+++.+....+.+.+..++-.+...+. ..+.+..++++.|.+.|..+.+..++..=...|+-||..++
T Consensus 62 ~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~ 141 (429)
T PF10037_consen 62 KPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSF 141 (429)
T ss_pred CCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhH
Confidence 334455555666666666666666666666555322 23445568888888888888888888887788888888888
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCCCccHHHHHHHHHHHHhc
Q 044770 308 NSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKS 352 (464)
Q Consensus 308 ~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 352 (464)
|.+++.+.+.|++..|.++..+|..++...+..|+...+.+|.+-
T Consensus 142 n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 142 NLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 888888888888888888888888777777777777666666654
No 148
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=98.06 E-value=3.8e-05 Score=53.94 Aligned_cols=41 Identities=10% Similarity=0.175 Sum_probs=22.4
Q ss_pred HHHHHHhhCcHHHHHHHHHHHHHcCC-CCchhhHHHHHHHhc
Q 044770 101 LVIACLDKGVIKLSLEYMKKMRVLGH-SISYLVFNRLIILNS 141 (464)
Q Consensus 101 li~~~~~~~~~~~a~~~~~~m~~~~~-~~~~~~~~~l~~~~~ 141 (464)
.|..+...+++.....+|+.+++.|+ .|+..+|+.++...+
T Consensus 31 ~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~ 72 (120)
T PF08579_consen 31 NINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIA 72 (120)
T ss_pred HHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHH
Confidence 34444444555555555555555555 555555555555443
No 149
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.02 E-value=0.00016 Score=64.86 Aligned_cols=123 Identities=11% Similarity=0.056 Sum_probs=70.8
Q ss_pred HHHHHHHHccCChhHHHHHHHHHHhCCCCCcHhHHHHHHHHHHhcChhhHHHHHHHHHHhccCCCChhhHHHHHHHHHhh
Q 044770 169 HILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYL 248 (464)
Q Consensus 169 ~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 248 (464)
..|+..+...++++.|..+|+++.+.. |+ ....++..+...++..+|.+++.+..+. .+.+......-...+.+.
T Consensus 173 ~~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~-~p~d~~LL~~Qa~fLl~k 247 (395)
T PF09295_consen 173 DTLLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKE-NPQDSELLNLQAEFLLSK 247 (395)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHhc
Confidence 345556666778888888888887663 44 3344666666677777777777777654 222333333334444555
Q ss_pred cChhhHHHHHHHhccCCCCchhhHHHHHHHhhccCChHHHHHHHHHHH
Q 044770 249 AKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQ 296 (464)
Q Consensus 249 ~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 296 (464)
++++.|..+.+......+.+..+|..|..+|...|+++.|+..+..+.
T Consensus 248 ~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 248 KKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred CCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 555555555555555444444455555555555555555555544433
No 150
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.99 E-value=9.2e-06 Score=43.67 Aligned_cols=30 Identities=43% Similarity=0.700 Sum_probs=21.4
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 044770 306 QYNSVISVYCKNGFIDKASGLLKEMSMNGC 335 (464)
Q Consensus 306 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~ 335 (464)
+|+.++.+|++.|++++|.++|++|.+.|+
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 577777777777777777777777776653
No 151
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.99 E-value=0.00036 Score=53.98 Aligned_cols=116 Identities=9% Similarity=-0.042 Sum_probs=71.9
Q ss_pred hcChhhHHHHHHHhccCCCCch---hhHHHHHHHhhccCChHHHHHHHHHHHhccccCC--hhhHHHHHHHHHhcCChhH
Q 044770 248 LAKGKDLERIWATVQELPNVRS---KSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKA--TEQYNSVISVYCKNGFIDK 322 (464)
Q Consensus 248 ~~~~~~a~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~li~~~~~~~~~~~ 322 (464)
.++...+...++.+....+.+. .....+...+...|++++|...|+.+......|+ ....-.+...+...|++++
T Consensus 24 ~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~ 103 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDE 103 (145)
T ss_pred CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 4444555555555554333332 1233455667778888888888888877552222 1234446677778888888
Q ss_pred HHHHHHHHHhCCCCccHHHHHHHHHHHHhcCChHHHHHHHHHh
Q 044770 323 ASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELG 365 (464)
Q Consensus 323 a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 365 (464)
|+..++...... .....+......+.+.|+.++|...|+.+
T Consensus 104 Al~~L~~~~~~~--~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 104 ALATLQQIPDEA--FKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHhccCcc--hHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 888886643322 23445556667788888888888888765
No 152
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.97 E-value=1e-05 Score=43.48 Aligned_cols=30 Identities=23% Similarity=0.410 Sum_probs=27.0
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHHHcCC
Q 044770 383 TTLSIIEIFAEKGDVGNAENLFEELKKANY 412 (464)
Q Consensus 383 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 412 (464)
+|+.++++|++.|++++|.++|++|.+.|+
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 689999999999999999999999998774
No 153
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.93 E-value=0.00026 Score=52.69 Aligned_cols=99 Identities=11% Similarity=0.051 Sum_probs=70.0
Q ss_pred hchHHHHHHHHhhcchHHHHHHHHHHHHcCCCCC-CchhHHHHHHHHHhhcChHHHHHHhhhcCCCCCc----hhHHHHH
Q 044770 27 GEIFHSINRLRKLQLNKRALEVMEWVIRERPYRP-KELDYSYLLEFTIKNHGISQGEKLFCCIPKDYQN----ELLYNNL 101 (464)
Q Consensus 27 ~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~----~~~~~~l 101 (464)
.++......+.+.|++++|.+.|+.+.+..+-.+ ....+..+...+.+.|+++.|...|+.+....|+ ..++..+
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~ 82 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKL 82 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHH
Confidence 4566777778888888888888888876432111 1245566777888888888888888877654333 3456677
Q ss_pred HHHHHhhCcHHHHHHHHHHHHHcC
Q 044770 102 VIACLDKGVIKLSLEYMKKMRVLG 125 (464)
Q Consensus 102 i~~~~~~~~~~~a~~~~~~m~~~~ 125 (464)
..++.+.|++++|...++++.+..
T Consensus 83 ~~~~~~~~~~~~A~~~~~~~~~~~ 106 (119)
T TIGR02795 83 GMSLQELGDKEKAKATLQQVIKRY 106 (119)
T ss_pred HHHHHHhCChHHHHHHHHHHHHHC
Confidence 777778888888888888887763
No 154
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.93 E-value=0.00022 Score=56.96 Aligned_cols=116 Identities=17% Similarity=0.208 Sum_probs=78.5
Q ss_pred HHHhhhcCCCCCchhHHHHHHHHHHh-----hCcHHHHHHHHHHHHHcCCCCchhhHHHHHHHhcCCCCcccHHHHHHHH
Q 044770 82 EKLFCCIPKDYQNELLYNNLVIACLD-----KGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQM 156 (464)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~li~~~~~-----~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 156 (464)
...|+.......+..+|..+++.|.+ .|..+-....+..|.+-|+.-|..+|+.|++.+=+ |.+- -..+|+.+
T Consensus 34 ~~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv-p~n~fQ~~ 111 (228)
T PF06239_consen 34 EELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV-PRNFFQAE 111 (228)
T ss_pred HHHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc-cccHHHHH
Confidence 34455553334566677777777654 36777777788888888888888888888887764 3221 11122211
Q ss_pred HhCCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCcHhHHHHHHHHHHhcChh
Q 044770 157 KADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLY 216 (464)
Q Consensus 157 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~ 216 (464)
- . -.-.+.+-|++++++|...|+-||..|+..+++.+.+.+..
T Consensus 112 F--------------~---hyp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~p 154 (228)
T PF06239_consen 112 F--------------M---HYPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSHP 154 (228)
T ss_pred h--------------c---cCcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccHH
Confidence 1 1 11234567889999999999999999999999998776654
No 155
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.92 E-value=0.011 Score=55.88 Aligned_cols=340 Identities=14% Similarity=0.117 Sum_probs=197.5
Q ss_pred HhhcCccChhchHH-----HHHHHHhhcchHHHHHHHHHHHHcCCCCCCchhHHHHHHHHHhhcCh---HHHHHHhhhcC
Q 044770 18 MREGFPVHRGEIFH-----SINRLRKLQLNKRALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGI---SQGEKLFCCIP 89 (464)
Q Consensus 18 ~~~g~~~~~~~~~~-----~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~---~~a~~~~~~~~ 89 (464)
.+-|+|.+-..|.. ++..+...+.+..|+++.+++....+ . ...+|......+.+..+. +.+..+-+++.
T Consensus 424 ~~~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~-~-~~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls 501 (829)
T KOG2280|consen 424 VRIGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPES-Q-GDRVLLEWARRKIKQSDKMDEEVLDKIDEKLS 501 (829)
T ss_pred cccCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCccc-c-ccHHHHHHHHHHHhccCccchHHHHHHHHHhc
Confidence 44588888877765 77888899999999999999854111 1 156677777777766332 22333333333
Q ss_pred CCCCchhHHHHHHHHHHhhCcHHHHHHHHHHHHHcCCC----CchhhHHHHHHHhcCCCCcccHHHHHHHHHhCCCCCCh
Q 044770 90 KDYQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHS----ISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHV 165 (464)
Q Consensus 90 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 165 (464)
.......+|..+.+-.-..|+++.|..+++.=...+.. .+..-+...+.-+.+.|+.+....++-++.+. .+.
T Consensus 502 ~~~~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~---~~~ 578 (829)
T KOG2280|consen 502 AKLTPGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNK---LNR 578 (829)
T ss_pred ccCCCceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHH---HHH
Confidence 32234567888887777899999999887543222211 12233444555566666666666666665542 121
Q ss_pred hhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCcHhHHHHHHHHHHhcChhhHHHHHHH--HH----HhccCCCChhhHH
Q 044770 166 STFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVE--AL----EKSMTGNNWSTLD 239 (464)
Q Consensus 166 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~--~~----~~~~~~~~~~~~~ 239 (464)
..|... ..+..-|..+|.+..+.. |..+. ..+.+.++-.++..-|. .. ...+..|+ ..
T Consensus 579 s~l~~~------l~~~p~a~~lY~~~~r~~---~~~~l----~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~---lk 642 (829)
T KOG2280|consen 579 SSLFMT------LRNQPLALSLYRQFMRHQ---DRATL----YDFYNQDDNHQALASFHLQASYAAETIEGRIPA---LK 642 (829)
T ss_pred HHHHHH------HHhchhhhHHHHHHHHhh---chhhh----hhhhhcccchhhhhhhhhhhhhhhhhhcccchh---HH
Confidence 112111 223445566666554321 11111 11112222222211111 10 00122222 22
Q ss_pred HHHHHHHhhcChh----------hHHHHHHHhcc--CCCCchhhHHHHHHHhhccCChHHHHHHHHHHHhccccCChhhH
Q 044770 240 VLIILYGYLAKGK----------DLERIWATVQE--LPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQY 307 (464)
Q Consensus 240 ~l~~~~~~~~~~~----------~a~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 307 (464)
.....+.+..... .-.++.+.+.. +.....-+.+--+.-+...|+..+|.++-.+..- ||-..|
T Consensus 643 ~~a~~~a~sk~~s~e~ka~ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fki----pdKr~~ 718 (829)
T KOG2280|consen 643 TAANAFAKSKEKSFEAKALEDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFKI----PDKRLW 718 (829)
T ss_pred HHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcCC----cchhhH
Confidence 2333343333211 11222222322 2223334566667778888999999988777665 788888
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCCCccHHHHHHHHHHHHhcCChHHHHHHHHHhHHHHhhhhhcCCCCcHHHHHHH
Q 044770 308 NSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSI 387 (464)
Q Consensus 308 ~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~p~~~~~~~l 387 (464)
-.=+.+++..+++++-.++-+.+. .+.-|.-+..+|.+.|+.++|..++... .+.. -.
T Consensus 719 wLk~~aLa~~~kweeLekfAkskk------sPIGy~PFVe~c~~~~n~~EA~KYiprv---------~~l~-------ek 776 (829)
T KOG2280|consen 719 WLKLTALADIKKWEELEKFAKSKK------SPIGYLPFVEACLKQGNKDEAKKYIPRV---------GGLQ-------EK 776 (829)
T ss_pred HHHHHHHHhhhhHHHHHHHHhccC------CCCCchhHHHHHHhcccHHHHhhhhhcc---------CChH-------HH
Confidence 888999999999988877766544 2456777889999999999999988776 2222 46
Q ss_pred HHHHHhcCChhhHHHHH
Q 044770 388 IEIFAEKGDVGNAENLF 404 (464)
Q Consensus 388 i~~~~~~g~~~~A~~~~ 404 (464)
+.+|.+.|++.+|.++-
T Consensus 777 v~ay~~~~~~~eAad~A 793 (829)
T KOG2280|consen 777 VKAYLRVGDVKEAADLA 793 (829)
T ss_pred HHHHHHhccHHHHHHHH
Confidence 78899999999998774
No 156
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.84 E-value=0.00025 Score=61.59 Aligned_cols=128 Identities=10% Similarity=0.100 Sum_probs=60.2
Q ss_pred hHHHHHHHHHhhcChHHHHHHhhhcCCCCC-chhHHHHHHHH-HHhhCcHHHHHHHHHHHHHcCCCCchhhHHHHHHHhc
Q 044770 64 DYSYLLEFTIKNHGISQGEKLFCCIPKDYQ-NELLYNNLVIA-CLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNS 141 (464)
Q Consensus 64 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~li~~-~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~ 141 (464)
+|..++...-+.+..+.|+.+|.+..+..+ +...|-..... +...++.+.|..+|+...+. ++.+...|...++.+.
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l~ 81 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFLI 81 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHH
Confidence 344555555555555555555555543311 22233322222 22234444455555555543 3444555555555555
Q ss_pred CCCCcccHHHHHHHHHhCCCCCCh---hhHHHHHHHHHccCChhHHHHHHHHHHh
Q 044770 142 SPGRRKTIPNILRQMKADKVAPHV---STFHILMKIEANDHNIEGLMKVYSDMKR 193 (464)
Q Consensus 142 ~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 193 (464)
+.++.+.|..+|++.... +.++. ..|...++.=.+.|+.+.+.++.+.+.+
T Consensus 82 ~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~ 135 (280)
T PF05843_consen 82 KLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE 135 (280)
T ss_dssp HTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred HhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 555555555555555543 22221 3555555555555666666666555554
No 157
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.82 E-value=5.5e-05 Score=52.19 Aligned_cols=82 Identities=15% Similarity=0.106 Sum_probs=55.8
Q ss_pred hcchHHHHHHHHHHHHcCCCCCCchhHHHHHHHHHhhcChHHHHHHhhhcCCCCCchhHHHHHHHHHHhhCcHHHHHHHH
Q 044770 39 LQLNKRALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQGEKLFCCIPKDYQNELLYNNLVIACLDKGVIKLSLEYM 118 (464)
Q Consensus 39 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~ 118 (464)
.|+++.|+.+++.+.+..+..++...+-.+..++.+.|++++|..+++.......+....-.+..++.+.|++++|+++|
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~l 81 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQKLKLDPSNPDIHYLLARCLLKLGKYEEAIKAL 81 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHCHTHHHCHHHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 57888899999888875432223444555778888888888888888882222334344445578888888888888888
Q ss_pred HH
Q 044770 119 KK 120 (464)
Q Consensus 119 ~~ 120 (464)
++
T Consensus 82 ~~ 83 (84)
T PF12895_consen 82 EK 83 (84)
T ss_dssp HH
T ss_pred hc
Confidence 65
No 158
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.77 E-value=0.0075 Score=52.67 Aligned_cols=96 Identities=13% Similarity=0.145 Sum_probs=57.9
Q ss_pred HHHHHHHhcCC-CCcccHHHHHHHHHhC----CCCCC--hhhHHHHHHHHHccCChhHHHHHHHHHHhCCCC-----CcH
Q 044770 133 FNRLIILNSSP-GRRKTIPNILRQMKAD----KVAPH--VSTFHILMKIEANDHNIEGLMKVYSDMKRSEVE-----PNE 200 (464)
Q Consensus 133 ~~~l~~~~~~~-~~~~~a~~~~~~~~~~----~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~-----p~~ 200 (464)
+..+...|-.. |+++.|.+.|++..+. | .+. ..++..+...+.+.|++++|.++|++....... .+.
T Consensus 117 ~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~ 195 (282)
T PF14938_consen 117 LKELAEIYEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSA 195 (282)
T ss_dssp HHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhH
Confidence 34444566666 7888888888877642 2 111 235566777888888999999999888654322 122
Q ss_pred h-HHHHHHHHHHhcChhhHHHHHHHHHHhc
Q 044770 201 V-SYCILATAHAVARLYTVAETYVEALEKS 229 (464)
Q Consensus 201 ~-~~~~li~~~~~~~~~~~a~~~~~~~~~~ 229 (464)
. .|-..+-++...|++..|...+++....
T Consensus 196 ~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~ 225 (282)
T PF14938_consen 196 KEYFLKAILCHLAMGDYVAARKALERYCSQ 225 (282)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHGTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 1 1223333566678888888888887654
No 159
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.75 E-value=0.0013 Score=48.86 Aligned_cols=101 Identities=16% Similarity=0.061 Sum_probs=59.8
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCCC--ccHHHHHHHHHHHHhcCChHHHHHHHHHhHHHHhhhhhcCCCCcHHH
Q 044770 306 QYNSVISVYCKNGFIDKASGLLKEMSMNGCK--PNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLET 383 (464)
Q Consensus 306 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~--p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~p~~~~ 383 (464)
++......+.+.|++++|...|..+.+.... .....+..+...+...|+++.|...++.+... ..+.......
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~p~~~~~~~~ 78 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKK-----YPKSPKAPDA 78 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHH-----CCCCCcccHH
Confidence 4455566666677777777777777653211 11234455666677777777777777776321 1111112344
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHHcC
Q 044770 384 TLSIIEIFAEKGDVGNAENLFEELKKAN 411 (464)
Q Consensus 384 ~~~li~~~~~~g~~~~A~~~~~~m~~~~ 411 (464)
+..+...+.+.|+.++|...++++.+..
T Consensus 79 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~ 106 (119)
T TIGR02795 79 LLKLGMSLQELGDKEKAKATLQQVIKRY 106 (119)
T ss_pred HHHHHHHHHHhCChHHHHHHHHHHHHHC
Confidence 5566666777777777777777777653
No 160
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.74 E-value=0.00037 Score=49.17 Aligned_cols=89 Identities=13% Similarity=0.032 Sum_probs=36.6
Q ss_pred HHHHHHhhCcHHHHHHHHHHHHHcCCCCchhhHHHHHHHhcCCCCcccHHHHHHHHHhCCCCCChhhHHHHHHHHHccCC
Q 044770 101 LVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHN 180 (464)
Q Consensus 101 li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 180 (464)
+...+...|++++|+..++...+.. +.+...+..+...+...+++++|.+.++...+.. +.+..++..+...+...|+
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 83 (100)
T cd00189 6 LGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYYKLGK 83 (100)
T ss_pred HHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHHHHHh
Confidence 3344444455555555554444431 1122333333444444444444444444443332 2222333344444444444
Q ss_pred hhHHHHHHHHH
Q 044770 181 IEGLMKVYSDM 191 (464)
Q Consensus 181 ~~~a~~~~~~m 191 (464)
++.|...+...
T Consensus 84 ~~~a~~~~~~~ 94 (100)
T cd00189 84 YEEALEAYEKA 94 (100)
T ss_pred HHHHHHHHHHH
Confidence 44444444443
No 161
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=97.72 E-value=0.031 Score=49.96 Aligned_cols=50 Identities=8% Similarity=-0.024 Sum_probs=31.3
Q ss_pred HHhcCChHHHHHHHHHhHHHHhhhhhcCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHH
Q 044770 349 CFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEEL 407 (464)
Q Consensus 349 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 407 (464)
+...|++.++.-.-... ..+.|++.+|..+.-.+....++++|..++..+
T Consensus 472 Lysqgey~kc~~ys~WL---------~~iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~L 521 (549)
T PF07079_consen 472 LYSQGEYHKCYLYSSWL---------TKIAPSPQAYRLLGLCLMENKRYQEAWEYLQKL 521 (549)
T ss_pred HHhcccHHHHHHHHHHH---------HHhCCcHHHHHHHHHHHHHHhhHHHHHHHHHhC
Confidence 34556666666555555 456666666666666666666777777666544
No 162
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.71 E-value=0.00061 Score=48.05 Aligned_cols=25 Identities=20% Similarity=0.250 Sum_probs=10.1
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHH
Q 044770 307 YNSVISVYCKNGFIDKASGLLKEMS 331 (464)
Q Consensus 307 ~~~li~~~~~~~~~~~a~~~~~~m~ 331 (464)
+..+...+...|++++|.+.++...
T Consensus 37 ~~~~~~~~~~~~~~~~a~~~~~~~~ 61 (100)
T cd00189 37 YYNLAAAYYKLGKYEEALEDYEKAL 61 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333444444444444444433
No 163
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.70 E-value=0.001 Score=57.73 Aligned_cols=96 Identities=11% Similarity=0.014 Sum_probs=46.5
Q ss_pred hhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCcHhHHHHHHHH-HHhcChhhHHHHHHHHHHhccCCCChhhHHHHHHH
Q 044770 166 STFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATA-HAVARLYTVAETYVEALEKSMTGNNWSTLDVLIIL 244 (464)
Q Consensus 166 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 244 (464)
.+|..+++...+.+..+.|..+|.+..+.+ ..+...|...... +...++.+.|..+|+...+. .+.+...+...++.
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHH
Confidence 356666666666666666666666666432 1122222222222 22245555566666666554 44444444444444
Q ss_pred HHhhcChhhHHHHHHHhcc
Q 044770 245 YGYLAKGKDLERIWATVQE 263 (464)
Q Consensus 245 ~~~~~~~~~a~~~~~~~~~ 263 (464)
+...++.+.+..+|++...
T Consensus 80 l~~~~d~~~aR~lfer~i~ 98 (280)
T PF05843_consen 80 LIKLNDINNARALFERAIS 98 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCC
T ss_pred HHHhCcHHHHHHHHHHHHH
Confidence 4444555454444444444
No 164
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.69 E-value=0.018 Score=50.36 Aligned_cols=201 Identities=15% Similarity=0.082 Sum_probs=107.5
Q ss_pred HHHHHccCChhHHHHHHHHHHhC----CCCC-cHhHHHHHHHHHHhcChhhHHHHHHHHHHhccCCCChhhHHHHHHHHH
Q 044770 172 MKIEANDHNIEGLMKVYSDMKRS----EVEP-NEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYG 246 (464)
Q Consensus 172 ~~~~~~~~~~~~a~~~~~~m~~~----~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 246 (464)
...|...+++++|.+.|.+.... +-.. -...|.....+| +..++++|...+++. +..|.
T Consensus 42 a~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~-k~~~~~~Ai~~~~~A---------------~~~y~ 105 (282)
T PF14938_consen 42 ANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCY-KKGDPDEAIECYEKA---------------IEIYR 105 (282)
T ss_dssp HHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHH-HHTTHHHHHHHHHHH---------------HHHHH
T ss_pred HHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-HhhCHHHHHHHHHHH---------------HHHHH
Confidence 34566667777777776665321 1000 012233333333 233555555555544 33455
Q ss_pred hhcChhhHHHHHHHhccCCCCchhhHHHHHHHhhcc-CChHHHHHHHHHHHhccc---cC--ChhhHHHHHHHHHhcCCh
Q 044770 247 YLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRI-AQVSRAEELWLEMQSVKQ---LK--ATEQYNSVISVYCKNGFI 320 (464)
Q Consensus 247 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~a~~~~~~~~~~~~---~~--~~~~~~~li~~~~~~~~~ 320 (464)
..|+...+-+. +..+...|... |+++.|.+.|++..+.-. .+ -..++..+...+.+.|++
T Consensus 106 ~~G~~~~aA~~--------------~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y 171 (282)
T PF14938_consen 106 EAGRFSQAAKC--------------LKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRY 171 (282)
T ss_dssp HCT-HHHHHHH--------------HHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-H
T ss_pred hcCcHHHHHHH--------------HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCH
Confidence 66666665544 34556677777 888888888887664211 11 133567778889999999
Q ss_pred hHHHHHHHHHHhCCC-----CccHH-HHHHHHHHHHhcCChHHHHHHHHHhHHHHhhhhhcCCCCc--HHHHHHHHHHHH
Q 044770 321 DKASGLLKEMSMNGC-----KPNAI-TYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPW--LETTLSIIEIFA 392 (464)
Q Consensus 321 ~~a~~~~~~m~~~g~-----~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~p~--~~~~~~li~~~~ 392 (464)
++|.++|++...... +++.. .|-..+-++...||...|...++.... ...++..+ ......|+.++-
T Consensus 172 ~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~-----~~~~F~~s~E~~~~~~l~~A~~ 246 (282)
T PF14938_consen 172 EEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCS-----QDPSFASSREYKFLEDLLEAYE 246 (282)
T ss_dssp HHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGT-----TSTTSTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-----hCCCCCCcHHHHHHHHHHHHHH
Confidence 999999999876432 22232 233334456667999999999998732 12233333 334456666653
Q ss_pred hcCChh---hHHHHHHHHH
Q 044770 393 EKGDVG---NAENLFEELK 408 (464)
Q Consensus 393 ~~g~~~---~A~~~~~~m~ 408 (464)
.|+.+ +|..-|+.+.
T Consensus 247 -~~D~e~f~~av~~~d~~~ 264 (282)
T PF14938_consen 247 -EGDVEAFTEAVAEYDSIS 264 (282)
T ss_dssp -TT-CCCHHHHCHHHTTSS
T ss_pred -hCCHHHHHHHHHHHcccC
Confidence 34443 4444444333
No 165
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.67 E-value=0.023 Score=50.10 Aligned_cols=196 Identities=13% Similarity=0.016 Sum_probs=98.4
Q ss_pred HHHhhcChhhHHHHHHHhccCCCCchhhHHHHHHH--hhccCChHHHHHHHHHHHhccccCChhh-------------HH
Q 044770 244 LYGYLAKGKDLERIWATVQELPNVRSKSYVLAIEA--FGRIAQVSRAEELWLEMQSVKQLKATEQ-------------YN 308 (464)
Q Consensus 244 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~a~~~~~~~~~~~~~~~~~~-------------~~ 308 (464)
++...|+.++|.+.--.+.+....+. +..++++ +--.++.+.|...|++....+ |+... |.
T Consensus 178 cl~~~~~~~~a~~ea~~ilkld~~n~--~al~vrg~~~yy~~~~~ka~~hf~qal~ld--pdh~~sk~~~~~~k~le~~k 253 (486)
T KOG0550|consen 178 CLAFLGDYDEAQSEAIDILKLDATNA--EALYVRGLCLYYNDNADKAINHFQQALRLD--PDHQKSKSASMMPKKLEVKK 253 (486)
T ss_pred hhhhcccchhHHHHHHHHHhcccchh--HHHHhcccccccccchHHHHHHHhhhhccC--hhhhhHHhHhhhHHHHHHHH
Confidence 34445555555554444444333333 2222222 223455566666665555432 22111 11
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhC---CCCccHHHHHHHHHHHHhcCChHHHHHHHHHhHHHHhhhhhcCCCCc-HHHH
Q 044770 309 SVISVYCKNGFIDKASGLLKEMSMN---GCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPW-LETT 384 (464)
Q Consensus 309 ~li~~~~~~~~~~~a~~~~~~m~~~---g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~p~-~~~~ 384 (464)
.=..-..+.|++..|.+.|.+.+.. ...|+...|.....+..+.|+.++|+.--+.++ .+.|. +..|
T Consensus 254 ~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al---------~iD~syikal 324 (486)
T KOG0550|consen 254 ERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEAL---------KIDSSYIKAL 324 (486)
T ss_pred hhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhh---------hcCHHHHHHH
Confidence 1122335667777788888777652 234455566666666677777777777777663 22221 1122
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHHHcCCCCcHH-HHHHHHHHHHHcCCC-hhHHHHHHHhCCCCCCHHHH
Q 044770 385 LSIIEIFAEKGDVGNAENLFEELKKANYTKYTF-VYNTLIKAYVKAKIN-DPNLLRRMILGGARPDAETY 452 (464)
Q Consensus 385 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~-~~~~li~~~~~~g~~-a~~~~~~m~~~~~~p~~~t~ 452 (464)
-.-..++...++|++|.+-++...+..-.+... ++.-...++-++.+. -..++---+.....|+...|
T Consensus 325 l~ra~c~l~le~~e~AV~d~~~a~q~~~s~e~r~~l~~A~~aLkkSkRkd~ykilGi~~~as~~eikkay 394 (486)
T KOG0550|consen 325 LRRANCHLALEKWEEAVEDYEKAMQLEKDCEIRRTLREAQLALKKSKRKDWYKILGISRNASDDEIKKAY 394 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhhhhhHHHHhhhhhhcccchhhhHH
Confidence 222333444566777777777666544333333 666666666666543 23333333333333444444
No 166
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.66 E-value=0.0066 Score=44.57 Aligned_cols=109 Identities=14% Similarity=0.017 Sum_probs=70.4
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCcc--HHHHHHHHHHHHhcCChHHHHHHHHHhHHHHhhhhhcCC-CCcHHHHHH
Q 044770 310 VISVYCKNGFIDKASGLLKEMSMNGCKPN--AITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSS-TPWLETTLS 386 (464)
Q Consensus 310 li~~~~~~~~~~~a~~~~~~m~~~g~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~p~~~~~~~ 386 (464)
...++-..|+.++|+.+|++....|.... ...+..+...+...|++++|..+++..+. ...- ..+......
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~------~~p~~~~~~~l~~f 80 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALE------EFPDDELNAALRVF 80 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH------HCCCccccHHHHHH
Confidence 45566777888888888888888776654 23455566677788888888888888742 1111 112222223
Q ss_pred HHHHHHhcCChhhHHHHHHHHHHcCCCCcHHHHHHHHHHHHH
Q 044770 387 IIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVK 428 (464)
Q Consensus 387 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~ 428 (464)
+..++...|+.++|.+.+-.... ++...|.--|..|..
T Consensus 81 ~Al~L~~~gr~~eAl~~~l~~la----~~~~~y~ra~~~ya~ 118 (120)
T PF12688_consen 81 LALALYNLGRPKEALEWLLEALA----ETLPRYRRAIRFYAD 118 (120)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHH----HHHHHHHHHHHHHHh
Confidence 44566778888888888766554 344577776666653
No 167
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.65 E-value=0.00013 Score=50.30 Aligned_cols=80 Identities=20% Similarity=0.189 Sum_probs=55.6
Q ss_pred cCChHHHHHHHHHHHhcccc-CChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcc-HHHHHHHHHHHHhcCChHHHH
Q 044770 282 IAQVSRAEELWLEMQSVKQL-KATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPN-AITYRHLALGCFKSNLVEEGF 359 (464)
Q Consensus 282 ~g~~~~a~~~~~~~~~~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~a~ 359 (464)
.|+++.|..+++++.+.... ++...+-.+..+|.+.|++++|+.+++. .+ ..|+ ......+..+|...|++++|+
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~--~~~~~~~~~~l~a~~~~~l~~y~eAi 78 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LK--LDPSNPDIHYLLARCLLKLGKYEEAI 78 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HT--HHHCHHHHHHHHHHHHHHTT-HHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hC--CCCCCHHHHHHHHHHHHHhCCHHHHH
Confidence 47788888888888875442 2445566678888899999999999887 32 2232 234445567788889999998
Q ss_pred HHHHH
Q 044770 360 KALEL 364 (464)
Q Consensus 360 ~~~~~ 364 (464)
.++++
T Consensus 79 ~~l~~ 83 (84)
T PF12895_consen 79 KALEK 83 (84)
T ss_dssp HHHHH
T ss_pred HHHhc
Confidence 88875
No 168
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.58 E-value=0.0026 Score=50.93 Aligned_cols=89 Identities=12% Similarity=0.100 Sum_probs=53.4
Q ss_pred chhHHHHHHHHHHhhCcHHHHHHHHHHHHHcCCCCc--hhhHHHHHHHhcCCCCcccHHHHHHHHHhCCCCCChhhHHHH
Q 044770 94 NELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSIS--YLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHIL 171 (464)
Q Consensus 94 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 171 (464)
....+..+...+...|++++|+..|++..+.+..+. ...+..+...+.+.|++++|...+++..+.. +.+...+..+
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l 112 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-PKQPSALNNI 112 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHH
Confidence 344566666667777777777777777765432221 3456666666777777777777777766542 2334455555
Q ss_pred HHHHHccCChhH
Q 044770 172 MKIEANDHNIEG 183 (464)
Q Consensus 172 ~~~~~~~~~~~~ 183 (464)
...+...|+...
T Consensus 113 g~~~~~~g~~~~ 124 (172)
T PRK02603 113 AVIYHKRGEKAE 124 (172)
T ss_pred HHHHHHcCChHh
Confidence 556666555433
No 169
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.57 E-value=0.0026 Score=50.65 Aligned_cols=63 Identities=14% Similarity=0.070 Sum_probs=32.0
Q ss_pred hhHHHHHHHHHccCChhHHHHHHHHHHhCCCCC--cHhHHHHHHHHHHhcChhhHHHHHHHHHHh
Q 044770 166 STFHILMKIEANDHNIEGLMKVYSDMKRSEVEP--NEVSYCILATAHAVARLYTVAETYVEALEK 228 (464)
Q Consensus 166 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p--~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 228 (464)
..|..+...+...|++++|+..|++.......| ...+|..+...+...|++++|+..++....
T Consensus 36 ~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~ 100 (168)
T CHL00033 36 FTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALE 100 (168)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344445555555566666666665554432111 123455555555555566666555555544
No 170
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.56 E-value=0.00081 Score=53.80 Aligned_cols=89 Identities=13% Similarity=0.078 Sum_probs=69.8
Q ss_pred ccHHHHHHHHHHHHhc-----CChHHHHHHHHHhHHHHhhhhhcCCCCcHHHHHHHHHHHHhc----------------C
Q 044770 337 PNAITYRHLALGCFKS-----NLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEK----------------G 395 (464)
Q Consensus 337 p~~~~~~~ll~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~----------------g 395 (464)
-|..+|..++..|.+. |.++=....+..| .+.|+.-|..+|+.|++.+=+. .
T Consensus 45 k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M-------~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~ 117 (228)
T PF06239_consen 45 KDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKM-------DEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPR 117 (228)
T ss_pred ccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHH-------HHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcH
Confidence 4677777777777643 4555555666666 7899999999999999987542 2
Q ss_pred ChhhHHHHHHHHHHcCCCCcHHHHHHHHHHHHHcCCC
Q 044770 396 DVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKIN 432 (464)
Q Consensus 396 ~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~ 432 (464)
+-+-|++++++|...|+-||..++..+++.|.+.+..
T Consensus 118 Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~p 154 (228)
T PF06239_consen 118 QQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSHP 154 (228)
T ss_pred HHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccHH
Confidence 2345889999999999999999999999999988865
No 171
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.55 E-value=0.0016 Score=58.75 Aligned_cols=90 Identities=4% Similarity=-0.109 Sum_probs=59.2
Q ss_pred HHHHhhCcHHHHHHHHHHHHHcCCCCchhhHHHHHHHhcCCCCcccHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChh
Q 044770 103 IACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIE 182 (464)
Q Consensus 103 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 182 (464)
..+...|++++|++.|++.++.. +-+...|..+..++.+.|++++|...++++++.. +.+...|..+..+|...|+++
T Consensus 10 ~~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg~~~ 87 (356)
T PLN03088 10 KEAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLEEYQ 87 (356)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCCHH
Confidence 34455677777777777777653 2345566666666777777777777777776653 345556666667777777777
Q ss_pred HHHHHHHHHHhC
Q 044770 183 GLMKVYSDMKRS 194 (464)
Q Consensus 183 ~a~~~~~~m~~~ 194 (464)
+|...|++..+.
T Consensus 88 eA~~~~~~al~l 99 (356)
T PLN03088 88 TAKAALEKGASL 99 (356)
T ss_pred HHHHHHHHHHHh
Confidence 777777776654
No 172
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.54 E-value=0.0021 Score=58.02 Aligned_cols=90 Identities=14% Similarity=-0.058 Sum_probs=59.8
Q ss_pred HHHHHhcChhhHHHHHHHHHHhccCCCChhhHHHHHHHHHhhcChhhHHHHHHHhccCCCCchhhHHHHHHHhhccCChH
Q 044770 207 ATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVS 286 (464)
Q Consensus 207 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 286 (464)
...+...|++++|+..|+++.... +.+...+..+..++...|++++|...++.+....+.+...|..+..+|...|+++
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~ 87 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQ 87 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHH
Confidence 344556677777777777776652 2345566666666777777777777777666655555666666666777777777
Q ss_pred HHHHHHHHHHh
Q 044770 287 RAEELWLEMQS 297 (464)
Q Consensus 287 ~a~~~~~~~~~ 297 (464)
+|...|+...+
T Consensus 88 eA~~~~~~al~ 98 (356)
T PLN03088 88 TAKAALEKGAS 98 (356)
T ss_pred HHHHHHHHHHH
Confidence 77777776665
No 173
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.53 E-value=0.00042 Score=45.47 Aligned_cols=63 Identities=17% Similarity=0.164 Sum_probs=46.5
Q ss_pred HhhcchHHHHHHHHHHHHcCCCCCCchhHHHHHHHHHhhcChHHHHHHhhhcCCCCCchhHHHHH
Q 044770 37 RKLQLNKRALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQGEKLFCCIPKDYQNELLYNNL 101 (464)
Q Consensus 37 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~l 101 (464)
...|++++|++.|+.+.... +-+...+..+..+|.+.|++++|.++++++....|+...|..+
T Consensus 2 l~~~~~~~A~~~~~~~l~~~--p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l 64 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRN--PDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQL 64 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHT--TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHH
Confidence 46788888888888888754 3366677778888888888888888888888776664444443
No 174
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.53 E-value=0.0044 Score=58.59 Aligned_cols=134 Identities=9% Similarity=-0.078 Sum_probs=87.3
Q ss_pred CCCChhhHHHHHHHHHhhcC-----hhhHHHHHHHhccCCCCchhhHHHHHHHhhcc--------CChHHHHHHHHHHHh
Q 044770 231 TGNNWSTLDVLIILYGYLAK-----GKDLERIWATVQELPNVRSKSYVLAIEAFGRI--------AQVSRAEELWLEMQS 297 (464)
Q Consensus 231 ~~~~~~~~~~l~~~~~~~~~-----~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------g~~~~a~~~~~~~~~ 297 (464)
.+.+...|...+++.....+ ...|..+|++..+..+.....+..+..++... .++..+.+.......
T Consensus 333 ~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~a 412 (517)
T PRK10153 333 LPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVA 412 (517)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhh
Confidence 44556666666666544322 45666677776665555555555443333221 123344444444333
Q ss_pred c-cccCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCccHHHHHHHHHHHHhcCChHHHHHHHHHhH
Q 044770 298 V-KQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGM 366 (464)
Q Consensus 298 ~-~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 366 (464)
. ....+...|..+.......|++++|...+++..+. .|+...|..+...+...|+.++|.+.++.++
T Consensus 413 l~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L--~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~ 480 (517)
T PRK10153 413 LPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDL--EMSWLNYVLLGKVYELKGDNRLAADAYSTAF 480 (517)
T ss_pred cccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 2 13335567777776777789999999999999884 4788888888899999999999999999884
No 175
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.52 E-value=0.0038 Score=49.93 Aligned_cols=62 Identities=13% Similarity=0.043 Sum_probs=34.6
Q ss_pred hHHHHHHHHHccCChhHHHHHHHHHHhCCCCCc--HhHHHHHHHHHHhcChhhHHHHHHHHHHh
Q 044770 167 TFHILMKIEANDHNIEGLMKVYSDMKRSEVEPN--EVSYCILATAHAVARLYTVAETYVEALEK 228 (464)
Q Consensus 167 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~--~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 228 (464)
.+..+...+...|++++|...|++..+....+. ...+..+..++.+.|++++|...+++...
T Consensus 37 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 100 (172)
T PRK02603 37 VYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALE 100 (172)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 445555556666666666666666654322221 23455555556666666666666665554
No 176
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.47 E-value=0.015 Score=55.03 Aligned_cols=147 Identities=12% Similarity=0.030 Sum_probs=92.0
Q ss_pred cCCCCchhhHHHHHHHhhcc-----CChHHHHHHHHHHHhccccCChhhHHHHHHHHHhcC--------ChhHHHHHHHH
Q 044770 263 ELPNVRSKSYVLAIEAFGRI-----AQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNG--------FIDKASGLLKE 329 (464)
Q Consensus 263 ~~~~~~~~~~~~l~~~~~~~-----g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~--------~~~~a~~~~~~ 329 (464)
..++.+...|...+++.... +..+.|..+|++..+.. +-....|..+..++.... +...+.+....
T Consensus 331 ~~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ld-P~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~ 409 (517)
T PRK10153 331 QGLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSE-PDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDN 409 (517)
T ss_pred ccCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHH
Confidence 35556666788777765432 33678888998888743 223445555444443321 12233333333
Q ss_pred HHhCC-CCccHHHHHHHHHHHHhcCChHHHHHHHHHhHHHHhhhhhcCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHH
Q 044770 330 MSMNG-CKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELK 408 (464)
Q Consensus 330 m~~~g-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 408 (464)
..... ...+...|..+.-.....|++++|...+++++ ...|+...|..+...+...|+.++|.+.+++..
T Consensus 410 a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl---------~L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~ 480 (517)
T PRK10153 410 IVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAI---------DLEMSWLNYVLLGKVYELKGDNRLAADAYSTAF 480 (517)
T ss_pred hhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHH---------HcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 33321 22344566666555566788999999998884 344677888888888889999999999988887
Q ss_pred HcCCCCcHHHHHH
Q 044770 409 KANYTKYTFVYNT 421 (464)
Q Consensus 409 ~~~~~p~~~~~~~ 421 (464)
..+ |...+|..
T Consensus 481 ~L~--P~~pt~~~ 491 (517)
T PRK10153 481 NLR--PGENTLYW 491 (517)
T ss_pred hcC--CCCchHHH
Confidence 754 65555543
No 177
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.41 E-value=0.0051 Score=48.99 Aligned_cols=95 Identities=12% Similarity=0.020 Sum_probs=64.9
Q ss_pred hHHHHHHHhhccCChHHHHHHHHHHHhccccC--ChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcc-HHHHHHHHH
Q 044770 271 SYVLAIEAFGRIAQVSRAEELWLEMQSVKQLK--ATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPN-AITYRHLAL 347 (464)
Q Consensus 271 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~ 347 (464)
.+..+...+...|++++|...|+........+ ...+|..+...+...|++++|+..++..... .|+ ..++..+..
T Consensus 37 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~--~~~~~~~~~~la~ 114 (168)
T CHL00033 37 TYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALER--NPFLPQALNNMAV 114 (168)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCcHHHHHHHHH
Confidence 45666777777888888888888887543222 2346788888888889999999988888764 332 344555555
Q ss_pred HHH-------hcCChHHHHHHHHHhHH
Q 044770 348 GCF-------KSNLVEEGFKALELGMK 367 (464)
Q Consensus 348 ~~~-------~~~~~~~a~~~~~~~~~ 367 (464)
.+. ..|+++.|...+++...
T Consensus 115 i~~~~~~~~~~~g~~~~A~~~~~~a~~ 141 (168)
T CHL00033 115 ICHYRGEQAIEQGDSEIAEAWFDQAAE 141 (168)
T ss_pred HHHHhhHHHHHcccHHHHHHHHHHHHH
Confidence 555 67777777666666543
No 178
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=97.41 E-value=0.014 Score=54.43 Aligned_cols=52 Identities=17% Similarity=0.252 Sum_probs=31.2
Q ss_pred HHHHHHHhhccCChHHHHHHHHHHHhccccCChhhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 044770 272 YVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSM 332 (464)
Q Consensus 272 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 332 (464)
...+..-+.+...+..|-++|..|-+ ...++......++|++|..+-+..-+
T Consensus 750 l~~~a~ylk~l~~~gLAaeIF~k~gD---------~ksiVqlHve~~~W~eAFalAe~hPe 801 (1081)
T KOG1538|consen 750 LLLCATYLKKLDSPGLAAEIFLKMGD---------LKSLVQLHVETQRWDEAFALAEKHPE 801 (1081)
T ss_pred HHHHHHHHhhccccchHHHHHHHhcc---------HHHHhhheeecccchHhHhhhhhCcc
Confidence 33334444455666667777766654 33456666677777777777665544
No 179
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.40 E-value=0.064 Score=45.49 Aligned_cols=175 Identities=10% Similarity=0.004 Sum_probs=104.7
Q ss_pred HHHHHHccCChhHHHHHHHHHHhCCCCCcHh-H---HHHHHHHHHhcChhhHHHHHHHHHHhccCCCChhhHHHHHHHHH
Q 044770 171 LMKIEANDHNIEGLMKVYSDMKRSEVEPNEV-S---YCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYG 246 (464)
Q Consensus 171 l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~-~---~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 246 (464)
....+.+.|++++|.+.|+++...- |+.. . .-.+..++.+.+++++|...+++..+....-...-+...+.+.+
T Consensus 38 ~A~~~~~~g~y~~Ai~~f~~l~~~y--P~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~ 115 (243)
T PRK10866 38 TAQQKLQDGNWKQAITQLEALDNRY--PFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLT 115 (243)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHh
Confidence 3444566788888888888887753 3322 2 13455667888888888888888877533322233333333332
Q ss_pred h--hc---------------Ch---hhHHHHHHHhccCCCCchhhHHHHHHHhhccCChHHHHHHHHHHHhccccCChhh
Q 044770 247 Y--LA---------------KG---KDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQ 306 (464)
Q Consensus 247 ~--~~---------------~~---~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 306 (464)
. .+ +. ..|... +..++.-|=...-..+|..-+..+...- ...
T Consensus 116 ~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~--------------~~~li~~yP~S~ya~~A~~rl~~l~~~l----a~~ 177 (243)
T PRK10866 116 NMALDDSALQGFFGVDRSDRDPQHARAAFRD--------------FSKLVRGYPNSQYTTDATKRLVFLKDRL----AKY 177 (243)
T ss_pred hhhcchhhhhhccCCCccccCHHHHHHHHHH--------------HHHHHHHCcCChhHHHHHHHHHHHHHHH----HHH
Confidence 1 11 11 122222 3344444444444555555444444310 001
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhC--CCCccHHHHHHHHHHHHhcCChHHHHHHHHHh
Q 044770 307 YNSVISVYCKNGFIDKASGLLKEMSMN--GCKPNAITYRHLALGCFKSNLVEEGFKALELG 365 (464)
Q Consensus 307 ~~~li~~~~~~~~~~~a~~~~~~m~~~--g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 365 (464)
--.+..-|.+.|.+..|..-++.+++. +.+........+..+|...|..++|..+....
T Consensus 178 e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l 238 (243)
T PRK10866 178 ELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKII 238 (243)
T ss_pred HHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 124566688899999999999999874 23334566778889999999999998877654
No 180
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.40 E-value=0.0056 Score=46.77 Aligned_cols=86 Identities=8% Similarity=-0.100 Sum_probs=36.0
Q ss_pred HHhcChhhHHHHHHHHHHhccCCCChhhHHHHHHHHHhhcChhhHHHHHHHhccCCCCchhhHHHHHHHhhccCChHHHH
Q 044770 210 HAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAE 289 (464)
Q Consensus 210 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 289 (464)
+...|++++|..+|+.+.... +-+..-|-.|..++...|++++|+..+.......+.++..+-.+..++...|+.+.|.
T Consensus 45 ly~~G~l~~A~~~f~~L~~~D-p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L~lG~~~~A~ 123 (157)
T PRK15363 45 LMEVKEFAGAARLFQLLTIYD-AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYLACDNVCYAI 123 (157)
T ss_pred HHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHcCCHHHHH
Confidence 334444444444444443321 1122233333333444444444444444443333333334444444455555555555
Q ss_pred HHHHHHH
Q 044770 290 ELWLEMQ 296 (464)
Q Consensus 290 ~~~~~~~ 296 (464)
+.|+...
T Consensus 124 ~aF~~Ai 130 (157)
T PRK15363 124 KALKAVV 130 (157)
T ss_pred HHHHHHH
Confidence 5554443
No 181
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.40 E-value=0.0079 Score=44.18 Aligned_cols=21 Identities=10% Similarity=-0.198 Sum_probs=10.0
Q ss_pred HHhcChhhHHHHHHHHHHhcc
Q 044770 210 HAVARLYTVAETYVEALEKSM 230 (464)
Q Consensus 210 ~~~~~~~~~a~~~~~~~~~~~ 230 (464)
+-..|+.++|+.+|++....|
T Consensus 11 ~d~~G~~~~Ai~~Y~~Al~~g 31 (120)
T PF12688_consen 11 HDSLGREEEAIPLYRRALAAG 31 (120)
T ss_pred HHhcCCHHHHHHHHHHHHHcC
Confidence 334445555555555544444
No 182
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.40 E-value=0.04 Score=43.03 Aligned_cols=129 Identities=13% Similarity=0.019 Sum_probs=82.2
Q ss_pred CCcHhHHHHHHHHHHhcChhhHHHHHHHHHHhccCCCChhhHHHHHHHHHhhcChhhHHHHHHHhccCCC--CchhhHHH
Q 044770 197 EPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPN--VRSKSYVL 274 (464)
Q Consensus 197 ~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~ 274 (464)
.|+...-..+..+....|+..+|...|++....-...|......+.++....++...+...++.+-+.++ .++.+...
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll 165 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLL 165 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHH
Confidence 5666666667777777788888888777777665666666777777777777777777777776655221 22334556
Q ss_pred HHHHhhccCChHHHHHHHHHHHhccccCChhhHHHHHHHHHhcCChhHHHHHH
Q 044770 275 AIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLL 327 (464)
Q Consensus 275 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~ 327 (464)
+.+.|...|++++|+.-|+...+.- |+...-......+.+.|+.+++..-+
T Consensus 166 ~aR~laa~g~~a~Aesafe~a~~~y--pg~~ar~~Y~e~La~qgr~~ea~aq~ 216 (251)
T COG4700 166 FARTLAAQGKYADAESAFEVAISYY--PGPQARIYYAEMLAKQGRLREANAQY 216 (251)
T ss_pred HHHHHHhcCCchhHHHHHHHHHHhC--CCHHHHHHHHHHHHHhcchhHHHHHH
Confidence 6777777788887888887777643 33333222333455666655554433
No 183
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.37 E-value=0.004 Score=47.52 Aligned_cols=92 Identities=5% Similarity=-0.147 Sum_probs=52.1
Q ss_pred HHHHHHHHhhcChHHHHHHhhhcCCCCC-chhHHHHHHHHHHhhCcHHHHHHHHHHHHHcCCCCchhhHHHHHHHhcCCC
Q 044770 66 SYLLEFTIKNHGISQGEKLFCCIPKDYQ-NELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPG 144 (464)
Q Consensus 66 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~ 144 (464)
-.+...+...|++++|.++|+.+....| +..-|-.|..++-..|++++|+..|......+ +-|...+-.+..++...|
T Consensus 39 Y~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~ddp~~~~~ag~c~L~lG 117 (157)
T PRK15363 39 YRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-IDAPQAPWAAAECYLACD 117 (157)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHHHHHcC
Confidence 3344445556666666666665554422 44455555555666666666666666665544 234555555555666666
Q ss_pred CcccHHHHHHHHHh
Q 044770 145 RRKTIPNILRQMKA 158 (464)
Q Consensus 145 ~~~~a~~~~~~~~~ 158 (464)
+.+.|.+.|+..+.
T Consensus 118 ~~~~A~~aF~~Ai~ 131 (157)
T PRK15363 118 NVCYAIKALKAVVR 131 (157)
T ss_pred CHHHHHHHHHHHHH
Confidence 66666666665554
No 184
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.36 E-value=0.013 Score=45.54 Aligned_cols=156 Identities=8% Similarity=-0.053 Sum_probs=110.3
Q ss_pred HHHHHHHhhcchHHHHHHHHHHHHcCCCCCCchhHHHHHHHHHhhcChHHHHHHhhhcCCC--CCchhHHHHHHHHHHhh
Q 044770 31 HSINRLRKLQLNKRALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQGEKLFCCIPKD--YQNELLYNNLVIACLDK 108 (464)
Q Consensus 31 ~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~~~li~~~~~~ 108 (464)
.+..+..+.=+++...+-...-.. .-|+...--.|...+.+.|+..+|...|++.... ..+....-.+.++....
T Consensus 61 ~~~~a~~q~ldP~R~~Rea~~~~~---~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~ 137 (251)
T COG4700 61 TLLMALQQKLDPERHLREATEELA---IAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAI 137 (251)
T ss_pred HHHHHHHHhcChhHHHHHHHHHHh---hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhh
Confidence 344455555555554443333322 4677888888999999999999999999988765 34677778888888999
Q ss_pred CcHHHHHHHHHHHHHcCC-CCchhhHHHHHHHhcCCCCcccHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhHHHHH
Q 044770 109 GVIKLSLEYMKKMRVLGH-SISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKV 187 (464)
Q Consensus 109 ~~~~~a~~~~~~m~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 187 (464)
+++..|...++++.+... .-+..+.-.+.+.+...|...+|+.-|+..... -|+...-......+.+.|+.+++..-
T Consensus 138 ~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~--ypg~~ar~~Y~e~La~qgr~~ea~aq 215 (251)
T COG4700 138 QEFAAAQQTLEDLMEYNPAFRSPDGHLLFARTLAAQGKYADAESAFEVAISY--YPGPQARIYYAEMLAKQGRLREANAQ 215 (251)
T ss_pred ccHHHHHHHHHHHhhcCCccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcchhHHHHH
Confidence 999999999999887431 112344556778899999999999999999875 45544433344556777877666544
Q ss_pred HHHH
Q 044770 188 YSDM 191 (464)
Q Consensus 188 ~~~m 191 (464)
+..+
T Consensus 216 ~~~v 219 (251)
T COG4700 216 YVAV 219 (251)
T ss_pred HHHH
Confidence 4433
No 185
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=97.35 E-value=0.13 Score=47.97 Aligned_cols=382 Identities=11% Similarity=0.053 Sum_probs=215.3
Q ss_pred HHHHHHhhcchHHHHHHHHHHHHcCCCCCCchhHHHHHHHHHhhcChHHHHHHhhhcCCC-CCchhHHHHHHHHHH-hhC
Q 044770 32 SINRLRKLQLNKRALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQGEKLFCCIPKD-YQNELLYNNLVIACL-DKG 109 (464)
Q Consensus 32 ~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~li~~~~-~~~ 109 (464)
++.---...+.+.+..+++.+.... +.-..-|......=.+.|..+.+.++|++-... +.++..|...+..+. ..|
T Consensus 51 li~~~~~~~~~~~~r~~y~~fL~ky--Pl~~gyW~kfA~~E~klg~~~~s~~Vfergv~aip~SvdlW~~Y~~f~~n~~~ 128 (577)
T KOG1258|consen 51 LIQENDSIEDVDALREVYDIFLSKY--PLCYGYWKKFADYEYKLGNAENSVKVFERGVQAIPLSVDLWLSYLAFLKNNNG 128 (577)
T ss_pred HHhccCchhHHHHHHHHHHHHHhhC--ccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccCC
Confidence 3333333344466667777776533 223334566666667888888888888887776 346666766655443 457
Q ss_pred cHHHHHHHHHHHHHc-CCC-CchhhHHHHHHHhcCCCCcccHHHHHHHHHhCCCCCChhhHHHHHHHHH---c------c
Q 044770 110 VIKLSLEYMKKMRVL-GHS-ISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEA---N------D 178 (464)
Q Consensus 110 ~~~~a~~~~~~m~~~-~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~---~------~ 178 (464)
+.+.....|+..+.. |.. -+...|...|..-...+++.....++++.++. |. ..|+....-|. + .
T Consensus 129 d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRilei---P~-~~~~~~f~~f~~~l~~~~~~~l 204 (577)
T KOG1258|consen 129 DPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEI---PL-HQLNRHFDRFKQLLNQNEEKIL 204 (577)
T ss_pred CHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhh---hh-hHhHHHHHHHHHHHhcCChhhh
Confidence 777777788777762 321 23456777777777788888888888888753 21 11221111111 1 1
Q ss_pred CChhHHHHHHHHHHhC---------------C----CCCc-HhH--HHHHHH-------HHHhcChhhHHHHHHHHHHhc
Q 044770 179 HNIEGLMKVYSDMKRS---------------E----VEPN-EVS--YCILAT-------AHAVARLYTVAETYVEALEKS 229 (464)
Q Consensus 179 ~~~~~a~~~~~~m~~~---------------~----~~p~-~~~--~~~li~-------~~~~~~~~~~a~~~~~~~~~~ 229 (464)
...+++.++-.....+ + ..|. ..+ .+.+-. .+............++.-.+.
T Consensus 205 ~~~d~~~~l~~~~~~~~~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~~~~~~~~~~s~~~~~kr~~fE~~Ikr 284 (577)
T KOG1258|consen 205 LSIDELIQLRSDVAERSKITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRIVSIHEKVYQKSEEEEEKRWGFEEGIKR 284 (577)
T ss_pred cCHHHHHHHhhhHHhhhhcccccChhHHHHHHHhhccCccchhhHHHHHHHHHHHHHHHHHHhhHhHHHHHHhhhhhccc
Confidence 1223322222221110 0 0111 101 111111 111112222222223322221
Q ss_pred ---cCCC----ChhhHHHHHHHHHhhcChhhHHHHHHHhccCCCCchhhHHHHHHHhhccCChHHHHHHHHHHHhccccC
Q 044770 230 ---MTGN----NWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLK 302 (464)
Q Consensus 230 ---~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 302 (464)
.+.| +..+|...+..-...|+.+.+.-.+++..-....-...|-..+.-....|+.+-|..++....+-..+.
T Consensus 285 pYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~ 364 (577)
T KOG1258|consen 285 PYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKK 364 (577)
T ss_pred cccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCC
Confidence 1222 346777778888889999999999998877666666667777777777799999998888776643332
Q ss_pred ChhhHHHHHHHHH-hcCChhHHHHHHHHHHhCCCCccHHHHH-HHHHHHHhcCChHHHHH---HHHHhHHHHhhhhhcCC
Q 044770 303 ATEQYNSVISVYC-KNGFIDKASGLLKEMSMNGCKPNAITYR-HLALGCFKSNLVEEGFK---ALELGMKLITTKKVRSS 377 (464)
Q Consensus 303 ~~~~~~~li~~~~-~~~~~~~a~~~~~~m~~~g~~p~~~~~~-~ll~~~~~~~~~~~a~~---~~~~~~~~~~~~~~~~~ 377 (464)
.+ ....+-..+. ..|+++.|..+++...+. . |+..-.. .-+....+.|..+.+.. ++... .....
T Consensus 365 ~~-~i~L~~a~f~e~~~n~~~A~~~lq~i~~e-~-pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~-------~~~~~ 434 (577)
T KOG1258|consen 365 TP-IIHLLEARFEESNGNFDDAKVILQRIESE-Y-PGLVEVVLRKINWERRKGNLEDANYKNELYSSI-------YEGKE 434 (577)
T ss_pred Cc-HHHHHHHHHHHhhccHHHHHHHHHHHHhh-C-CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHh-------ccccc
Confidence 22 2222223333 457999999999999886 3 6543221 22333456777777773 33333 22222
Q ss_pred CCcHH--HHHHHHHH-HHhcCChhhHHHHHHHHHHcCCCCcHHHHHHHHHHHHHcC
Q 044770 378 TPWLE--TTLSIIEI-FAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAK 430 (464)
Q Consensus 378 ~p~~~--~~~~li~~-~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g 430 (464)
.+... .+.-..+. +.-.++.+.|..++.++.+. ++++...|-.++.-+...+
T Consensus 435 ~~~i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~~-~~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 435 NNGILEKLYVKFARLRYKIREDADLARIILLEANDI-LPDCKVLYLELIRFELIQP 489 (577)
T ss_pred CcchhHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhc-CCccHHHHHHHHHHHHhCC
Confidence 22211 11112221 22368899999999999886 4567778888888777776
No 186
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.32 E-value=0.077 Score=47.35 Aligned_cols=171 Identities=15% Similarity=0.097 Sum_probs=102.3
Q ss_pred HHHHHHHHHhhcChhhHHHHHHHhccCCCC----chhhHHHHHHHhhc---cCChHHHHHHHHHHHhccccCChhhHHHH
Q 044770 238 LDVLIILYGYLAKGKDLERIWATVQELPNV----RSKSYVLAIEAFGR---IAQVSRAEELWLEMQSVKQLKATEQYNSV 310 (464)
Q Consensus 238 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~----~~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 310 (464)
...++-+|....+++...++.+.+...+.. ...+-....-++.+ .|+.++|.+++..+......+++.+|..+
T Consensus 144 v~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~ 223 (374)
T PF13281_consen 144 VINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLL 223 (374)
T ss_pred HHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHH
Confidence 334555677777788888888877775433 22222344556666 88999999999886666677788888888
Q ss_pred HHHHHhc---------CChhHHHHHHHHHHhCCCCccHHHHHHHHHHHHhcCC-hHHHHHHHHHhHHHHhhhhhcC---C
Q 044770 311 ISVYCKN---------GFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNL-VEEGFKALELGMKLITTKKVRS---S 377 (464)
Q Consensus 311 i~~~~~~---------~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~---~ 377 (464)
...|-.. ...++|+..|.+.-+ +.||..+--.+...+...|. .+...++-+-.+++.....+.+ -
T Consensus 224 GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe--~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~ 301 (374)
T PF13281_consen 224 GRIYKDLFLESNFTDRESLDKAIEWYRKGFE--IEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEK 301 (374)
T ss_pred HHHHHHHHHHcCccchHHHHHHHHHHHHHHc--CCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccccc
Confidence 7766432 236778888887665 34554332222222222232 2222122111112111111222 3
Q ss_pred CCcHHHHHHHHHHHHhcCChhhHHHHHHHHHHc
Q 044770 378 TPWLETTLSIIEIFAEKGDVGNAENLFEELKKA 410 (464)
Q Consensus 378 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 410 (464)
..+-..+..++.+..-.|+.+.|.+..+.|...
T Consensus 302 ~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 302 MQDYWDVATLLEASVLAGDYEKAIQAAEKAFKL 334 (374)
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence 345555678888888999999999999999975
No 187
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.28 E-value=0.091 Score=44.56 Aligned_cols=181 Identities=12% Similarity=-0.007 Sum_probs=104.8
Q ss_pred HHHHHHHHHhcChhhHHHHHHHHHHhccCCCChhh---HHHHHHHHHhhcChhhHHHHHHHhccCCCCc-hhhHHHHHHH
Q 044770 203 YCILATAHAVARLYTVAETYVEALEKSMTGNNWST---LDVLIILYGYLAKGKDLERIWATVQELPNVR-SKSYVLAIEA 278 (464)
Q Consensus 203 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~l~~~ 278 (464)
+-.....+.+.|++++|...|+.+....... ... .-.+..++.+.++++.|...++.+.+..+.+ ...+...+.+
T Consensus 35 ~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s-~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g 113 (243)
T PRK10866 35 IYATAQQKLQDGNWKQAITQLEALDNRYPFG-PYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRG 113 (243)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC-hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHH
Confidence 3334455667899999999999998753322 222 2455677888899999999888887733332 2233333333
Q ss_pred hhc--cC---------------Ch---HHHHHHHHHHHhccccCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcc
Q 044770 279 FGR--IA---------------QV---SRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPN 338 (464)
Q Consensus 279 ~~~--~g---------------~~---~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~ 338 (464)
.+. .+ +. ..|...|+.+.+ -|-...-..+|...+..+... .-
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~---------------~yP~S~ya~~A~~rl~~l~~~---la 175 (243)
T PRK10866 114 LTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVR---------------GYPNSQYTTDATKRLVFLKDR---LA 175 (243)
T ss_pred HhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHH---------------HCcCChhHHHHHHHHHHHHHH---HH
Confidence 321 11 11 223333443333 222223334444444333321 00
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHhHHHHhhhhhcCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHH
Q 044770 339 AITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELK 408 (464)
Q Consensus 339 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 408 (464)
..- -.+..-|.+.|.+..|..-++.+++. -.+..........++.+|.+.|..++|..+...+.
T Consensus 176 ~~e-~~ia~~Y~~~~~y~AA~~r~~~v~~~-----Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 176 KYE-LSVAEYYTKRGAYVAVVNRVEQMLRD-----YPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHH-HHHHHHHHHcCchHHHHHHHHHHHHH-----CCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 111 14455578888888888888888642 23333355566788889999999999888776554
No 188
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.25 E-value=0.0042 Score=52.22 Aligned_cols=87 Identities=14% Similarity=-0.018 Sum_probs=55.3
Q ss_pred HHhcChhhHHHHHHHHHHhccCCCChhhHHHHHHHHHhhcChhhHHHHHHHhccCCCCchhhHHHHHHHhhccCChHHHH
Q 044770 210 HAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAE 289 (464)
Q Consensus 210 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 289 (464)
..+.+++.+|+..|.+.++. .+-|...|..-..+|.+.|.++.|++-.+......+....+|..|..+|...|++++|.
T Consensus 91 ~m~~~~Y~eAv~kY~~AI~l-~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~A~ 169 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAIEL-DPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEEAI 169 (304)
T ss_pred HHHhhhHHHHHHHHHHHHhc-CCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHHHH
Confidence 45667777777777776664 33345555555666666666666666666655555555566666666666677777776
Q ss_pred HHHHHHHh
Q 044770 290 ELWLEMQS 297 (464)
Q Consensus 290 ~~~~~~~~ 297 (464)
+.|++..+
T Consensus 170 ~aykKaLe 177 (304)
T KOG0553|consen 170 EAYKKALE 177 (304)
T ss_pred HHHHhhhc
Confidence 66666665
No 189
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.23 E-value=0.036 Score=45.85 Aligned_cols=129 Identities=12% Similarity=0.047 Sum_probs=62.0
Q ss_pred HHHHHHHHhhCcHHHHHHHHHHHHHcCCCCchhhHHHHHHHhcCCCCcccHHHHHHHHHhCCCCCChhhHHHHH-----H
Q 044770 99 NNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILM-----K 173 (464)
Q Consensus 99 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~-----~ 173 (464)
+.++..+.-.+.+.-...++++.++...+.+......|++.-.+.||.+.|...|++..+..-..|..+++.++ .
T Consensus 181 y~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~ 260 (366)
T KOG2796|consen 181 YSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAF 260 (366)
T ss_pred HHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhh
Confidence 34444444455555555566655555444455555555555556666666666665554432233333333222 2
Q ss_pred HHHccCChhHHHHHHHHHHhCCCCCcHhHHHHHHHHHHhcChhhHHHHHHHHHHh
Q 044770 174 IEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEK 228 (464)
Q Consensus 174 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 228 (464)
.|.-.+++..|...|++..... ..|+..-|.-.-+..-.|+..+|++.++.|..
T Consensus 261 i~lg~nn~a~a~r~~~~i~~~D-~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~ 314 (366)
T KOG2796|consen 261 LHLGQNNFAEAHRFFTEILRMD-PRNAVANNNKALCLLYLGKLKDALKQLEAMVQ 314 (366)
T ss_pred heecccchHHHHHHHhhccccC-CCchhhhchHHHHHHHHHHHHHHHHHHHHHhc
Confidence 2333445555555555554432 11333333333333344555555555555554
No 190
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.20 E-value=0.14 Score=45.23 Aligned_cols=107 Identities=21% Similarity=0.180 Sum_probs=80.2
Q ss_pred hHHHHHHHhhccCChHHHHHHHHHHHhccccCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCccHHHHHHHHHHHH
Q 044770 271 SYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCF 350 (464)
Q Consensus 271 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~ 350 (464)
+.+..+.-+...|+...|.++-.+..- |+..-|-..+.+|+..++|++-..+... +-++.-|..++.+|.
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~Fkv----~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~ 248 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEFKV----PDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACL 248 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHcCC----cHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHH
Confidence 455566777778888888777665543 7888899999999999999887776442 113477888899999
Q ss_pred hcCChHHHHHHHHHhHHHHhhhhhcCCCCcHHHHHHHHHHHHhcCChhhHHHHH
Q 044770 351 KSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLF 404 (464)
Q Consensus 351 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 404 (464)
+.|...+|..+...+ + +..-+..|.++|++.+|.+.-
T Consensus 249 ~~~~~~eA~~yI~k~------------~-----~~~rv~~y~~~~~~~~A~~~A 285 (319)
T PF04840_consen 249 KYGNKKEASKYIPKI------------P-----DEERVEMYLKCGDYKEAAQEA 285 (319)
T ss_pred HCCCHHHHHHHHHhC------------C-----hHHHHHHHHHCCCHHHHHHHH
Confidence 999998888877664 1 135678888999999987774
No 191
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.14 E-value=0.0019 Score=41.79 Aligned_cols=56 Identities=11% Similarity=0.054 Sum_probs=30.4
Q ss_pred HHHhhccCChHHHHHHHHHHHhccccCChhhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 044770 276 IEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSM 332 (464)
Q Consensus 276 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 332 (464)
...+...|++++|...|+.+.+.. +-+...+..+..++...|++++|...|+++.+
T Consensus 4 a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 4 ARALYQQGDYDEAIAAFEQALKQD-PDNPEAWYLLGRILYQQGRYDEALAYYERALE 59 (65)
T ss_dssp HHHHHHCTHHHHHHHHHHHHHCCS-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344555556666666666655533 22455555555555666666666666655554
No 192
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.14 E-value=0.0015 Score=42.73 Aligned_cols=62 Identities=23% Similarity=0.281 Sum_probs=39.3
Q ss_pred ccCChHHHHHHHHHHHhccccCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCccHHHHHHH
Q 044770 281 RIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHL 345 (464)
Q Consensus 281 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l 345 (464)
..|++++|.+.|+.+.+.. +-+...+..+..+|.+.|++++|..+++.+... .|+...|..+
T Consensus 3 ~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~--~~~~~~~~~l 64 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRN-PDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ--DPDNPEYQQL 64 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHT-TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG--GTTHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCHHHHHHH
Confidence 4567777777777776632 235666667777777777777777777777663 4554444433
No 193
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=97.11 E-value=0.0019 Score=43.69 Aligned_cols=69 Identities=17% Similarity=0.176 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHhHHHHhhhhhcCCCCc-HHHHHHHHHHHHhcCChhhHHHHHHHHHH
Q 044770 339 AITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPW-LETTLSIIEIFAEKGDVGNAENLFEELKK 409 (464)
Q Consensus 339 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 409 (464)
..+++.+...|...|++++|+..+++++++... .....|+ ..++..+...|...|++++|.+.+++..+
T Consensus 5 a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~--~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 5 ANAYNNLARVYRELGRYDEALDYYEKALDIEEQ--LGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH--TTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 356788888899999999999999999877322 1112343 67789999999999999999999988764
No 194
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.11 E-value=0.0058 Score=51.43 Aligned_cols=103 Identities=13% Similarity=0.076 Sum_probs=87.7
Q ss_pred HHHhhcChhhHHHHHHHhccCCCCchhhHHHHHHHhhccCChHHHHHHHHHHHhccccCChhhHHHHHHHHHhcCChhHH
Q 044770 244 LYGYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKA 323 (464)
Q Consensus 244 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a 323 (464)
-+.+.+++.+|...|.......+.+..-|..-..+|.+.|.++.|.+-.+...... +.-..+|..|..+|...|++++|
T Consensus 90 ~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iD-p~yskay~RLG~A~~~~gk~~~A 168 (304)
T KOG0553|consen 90 KLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSID-PHYSKAYGRLGLAYLALGKYEEA 168 (304)
T ss_pred HHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcC-hHHHHHHHHHHHHHHccCcHHHH
Confidence 35677899999999999999888888889999999999999999999988888732 22466899999999999999999
Q ss_pred HHHHHHHHhCCCCccHHHHHHHHHHH
Q 044770 324 SGLLKEMSMNGCKPNAITYRHLALGC 349 (464)
Q Consensus 324 ~~~~~~m~~~g~~p~~~~~~~ll~~~ 349 (464)
++.|++.++ +.|+..+|-.=+...
T Consensus 169 ~~aykKaLe--ldP~Ne~~K~nL~~A 192 (304)
T KOG0553|consen 169 IEAYKKALE--LDPDNESYKSNLKIA 192 (304)
T ss_pred HHHHHhhhc--cCCCcHHHHHHHHHH
Confidence 999999988 789888876655543
No 195
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.08 E-value=0.016 Score=50.96 Aligned_cols=136 Identities=12% Similarity=-0.021 Sum_probs=86.8
Q ss_pred hHHHHHHHhhccCChHHHHHHHHHH----HhccccC-ChhhHHHHHHHHHhcCChhHHHHHHHHHH----hCCC-CccHH
Q 044770 271 SYVLAIEAFGRIAQVSRAEELWLEM----QSVKQLK-ATEQYNSVISVYCKNGFIDKASGLLKEMS----MNGC-KPNAI 340 (464)
Q Consensus 271 ~~~~l~~~~~~~g~~~~a~~~~~~~----~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~----~~g~-~p~~~ 340 (464)
.|..|...|.-.|+++.|...-+.- .+.|... ....+..+..++.-.|+++.|.+.|+... +.|- .....
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ 276 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ 276 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence 4566666777778888877654432 2222211 23467777888888888888888876643 2221 22344
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHhHHHHhhhhhcCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHH
Q 044770 341 TYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELK 408 (464)
Q Consensus 341 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 408 (464)
+..++...|.-..+++.|+.++..-+.+... -....-....+.+|..+|...|..+.|+.+.+.-.
T Consensus 277 scYSLgNtytll~e~~kAI~Yh~rHLaIAqe--L~DriGe~RacwSLgna~~alg~h~kAl~fae~hl 342 (639)
T KOG1130|consen 277 SCYSLGNTYTLLKEVQKAITYHQRHLAIAQE--LEDRIGELRACWSLGNAFNALGEHRKALYFAELHL 342 (639)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH--HHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 5556777777778888888888776654332 12233345677788888888888888887766544
No 196
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.08 E-value=0.18 Score=44.38 Aligned_cols=283 Identities=15% Similarity=0.072 Sum_probs=155.8
Q ss_pred hCcHHHHHHHHHHHHHcCCCCchhhHHHHHHH--hcCCCCcccHHHHHHHHHhCCCCCChhhH--HHHHHHHHccCChhH
Q 044770 108 KGVIKLSLEYMKKMRVLGHSISYLVFNRLIIL--NSSPGRRKTIPNILRQMKADKVAPHVSTF--HILMKIEANDHNIEG 183 (464)
Q Consensus 108 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~~~~~~ 183 (464)
.|+-..|.++-.+-.+. +..|......++.+ ..-.|+++.|.+-|+.|.+ .|..... ..|.-.-.+.|..+.
T Consensus 97 AGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~---dPEtRllGLRgLyleAqr~Garea 172 (531)
T COG3898 97 AGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLD---DPETRLLGLRGLYLEAQRLGAREA 172 (531)
T ss_pred cCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhc---ChHHHHHhHHHHHHHHHhcccHHH
Confidence 35555555554443321 23344444444433 3345667777777777664 2322211 122222334566666
Q ss_pred HHHHHHHHHhCCCCCc-HhHHHHHHHHHHhcChhhHHHHHHHHHHhcc-CCCChh--hHHHHHHHHH--h-hcChhhHHH
Q 044770 184 LMKVYSDMKRSEVEPN-EVSYCILATAHAVARLYTVAETYVEALEKSM-TGNNWS--TLDVLIILYG--Y-LAKGKDLER 256 (464)
Q Consensus 184 a~~~~~~m~~~~~~p~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~--~~~~l~~~~~--~-~~~~~~a~~ 256 (464)
|..+-+..... .|. ...+...+...+..|+|+.|+++++.-.... +.++.. .-..|+.+-. . ..+...|..
T Consensus 173 Ar~yAe~Aa~~--Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~ 250 (531)
T COG3898 173 ARHYAERAAEK--APQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARD 250 (531)
T ss_pred HHHHHHHHHhh--ccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHH
Confidence 66666655443 222 3455666666677777777777766544322 222221 1111221111 0 112333333
Q ss_pred HHHHhccCCCCchhhHHHHHHHhhccCChHHHHHHHHHHHhccccCChhhHHHHHHHHHhcCChhHHHHHHHHHHh-CCC
Q 044770 257 IWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSM-NGC 335 (464)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~-~g~ 335 (464)
.-....+..+.-...-..-..++.+.|+..++-.+++.+-+....|+ . ...|.+...-+.++.-+++... ..+
T Consensus 251 ~A~~a~KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~--i----a~lY~~ar~gdta~dRlkRa~~L~sl 324 (531)
T COG3898 251 DALEANKLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPD--I----ALLYVRARSGDTALDRLKRAKKLESL 324 (531)
T ss_pred HHHHHhhcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChH--H----HHHHHHhcCCCcHHHHHHHHHHHHhc
Confidence 33333232111111233445778899999999999999998654444 2 2344444444556655555443 125
Q ss_pred Ccc-HHHHHHHHHHHHhcCChHHHHHHHHHhHHHHhhhhhcCCCCcHHHHHHHHHHHHh-cCChhhHHHHHHHHHHcC
Q 044770 336 KPN-AITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAE-KGDVGNAENLFEELKKAN 411 (464)
Q Consensus 336 ~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~-~g~~~~A~~~~~~m~~~~ 411 (464)
+|| ..+...+..+....|++..|..--+.+ ....|....|..|.+.-.. .|+-.++...+-+..+..
T Consensus 325 k~nnaes~~~va~aAlda~e~~~ARa~Aeaa---------~r~~pres~~lLlAdIeeAetGDqg~vR~wlAqav~AP 393 (531)
T COG3898 325 KPNNAESSLAVAEAALDAGEFSAARAKAEAA---------AREAPRESAYLLLADIEEAETGDQGKVRQWLAQAVKAP 393 (531)
T ss_pred CccchHHHHHHHHHHHhccchHHHHHHHHHH---------hhhCchhhHHHHHHHHHhhccCchHHHHHHHHHHhcCC
Confidence 554 456667777888889998888777766 5678888888877777654 499999999988887763
No 197
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=97.08 E-value=0.009 Score=44.36 Aligned_cols=58 Identities=14% Similarity=0.104 Sum_probs=49.4
Q ss_pred hhcCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHHH-cCCCCcHHHHHHHHHHHHHcC
Q 044770 373 KVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKK-ANYTKYTFVYNTLIKAYVKAK 430 (464)
Q Consensus 373 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~~~~p~~~~~~~li~~~~~~g 430 (464)
......|+..+..+++.+|+..|++..|.++++...+ -+++.+..+|..|++=+...-
T Consensus 44 ~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~v~s 102 (126)
T PF12921_consen 44 PSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAYVLS 102 (126)
T ss_pred CCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhc
Confidence 4567889999999999999999999999999998875 467777889999998666554
No 198
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.06 E-value=0.0023 Score=41.38 Aligned_cols=54 Identities=13% Similarity=0.034 Sum_probs=27.5
Q ss_pred HHHHhhcChHHHHHHhhhcCCCCC-chhHHHHHHHHHHhhCcHHHHHHHHHHHHH
Q 044770 70 EFTIKNHGISQGEKLFCCIPKDYQ-NELLYNNLVIACLDKGVIKLSLEYMKKMRV 123 (464)
Q Consensus 70 ~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 123 (464)
..+...|++++|.+.|+.+....| +...+..+..++...|++++|...|+++.+
T Consensus 5 ~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 5 RALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALE 59 (65)
T ss_dssp HHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344455555555555555544433 344555555555555555555555555544
No 199
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.93 E-value=0.27 Score=43.76 Aligned_cols=261 Identities=9% Similarity=-0.077 Sum_probs=142.6
Q ss_pred HHHHHHHhhcchHHHHHHHHHHHHcCCCCCCchhHHHHHHHHHhhcChHHHHHHhhhcCCCCC-chhHHHHHHHHHHhhC
Q 044770 31 HSINRLRKLQLNKRALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQGEKLFCCIPKDYQ-NELLYNNLVIACLDKG 109 (464)
Q Consensus 31 ~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~li~~~~~~~ 109 (464)
..-..+.+..++..|+..+...++.. +-+..-|..-...+.-.|++++|.--.+.-....+ ....+...-+++...+
T Consensus 54 ~~gn~~yk~k~Y~nal~~yt~Ai~~~--pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k~~~r~~~c~~a~~ 131 (486)
T KOG0550|consen 54 EEGNAFYKQKTYGNALKNYTFAIDMC--PDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSKGQLREGQCHLALS 131 (486)
T ss_pred hhcchHHHHhhHHHHHHHHHHHHHhC--ccchhhhchhHHHHHHHHhHhhcccchhhheecCCCccccccchhhhhhhhH
Confidence 34456677888999999999998843 23344555555666666677766554433322211 1111222222222222
Q ss_pred cHHHHHHHH---------------HHHHHcCC-CCchhhHHHHH-HHhcCCCCcccHHHHHHHHHhCCCCCChhhHHHHH
Q 044770 110 VIKLSLEYM---------------KKMRVLGH-SISYLVFNRLI-ILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILM 172 (464)
Q Consensus 110 ~~~~a~~~~---------------~~m~~~~~-~~~~~~~~~l~-~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 172 (464)
+..+|.+.+ +....... +|...++..+- .++.-.|+.++|.++--..++.. ..+ .+...+
T Consensus 132 ~~i~A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld-~~n--~~al~v 208 (486)
T KOG0550|consen 132 DLIEAEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLD-ATN--AEALYV 208 (486)
T ss_pred HHHHHHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcc-cch--hHHHHh
Confidence 222322222 22211111 23233343332 23556778888887776666532 122 233333
Q ss_pred HH--HHccCChhHHHHHHHHHHhCCCCCcHhHHHH---H----------HHHHHhcChhhHHHHHHHHHHhc---cCCCC
Q 044770 173 KI--EANDHNIEGLMKVYSDMKRSEVEPNEVSYCI---L----------ATAHAVARLYTVAETYVEALEKS---MTGNN 234 (464)
Q Consensus 173 ~~--~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~---l----------i~~~~~~~~~~~a~~~~~~~~~~---~~~~~ 234 (464)
++ +--.++.+.+...|++-+.. .|+...-.. . .+-..+.|.+..|.+.|.+.+.. +..++
T Consensus 209 rg~~~yy~~~~~ka~~hf~qal~l--dpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~n 286 (486)
T KOG0550|consen 209 RGLCLYYNDNADKAINHFQQALRL--DPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTN 286 (486)
T ss_pred cccccccccchHHHHHHHhhhhcc--ChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchh
Confidence 33 33467778888888887765 344322211 1 12234678888888888877653 23344
Q ss_pred hhhHHHHHHHHHhhcChhhHHHHHHHhccCCCCchhhHHHHHHHhhccCChHHHHHHHHHHHhc
Q 044770 235 WSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSV 298 (464)
Q Consensus 235 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 298 (464)
...|.....+..+.|+..+|+.-.+...+..+.-...+..-..++...++|++|.+-|+...+.
T Consensus 287 aklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~AV~d~~~a~q~ 350 (486)
T KOG0550|consen 287 AKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQL 350 (486)
T ss_pred HHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4555555666677777777777776666655444444555555666677777777777776653
No 200
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=96.93 E-value=0.028 Score=47.70 Aligned_cols=100 Identities=8% Similarity=-0.044 Sum_probs=61.4
Q ss_pred CCCchhHHHHHHHHHhhcChHHHHHHhhhcCCC-CCchhHHHHHHHHHHhh---CcHHHHHHHHHHHHHcCCCCchhhHH
Q 044770 59 RPKELDYSYLLEFTIKNHGISQGEKLFCCIPKD-YQNELLYNNLVIACLDK---GVIKLSLEYMKKMRVLGHSISYLVFN 134 (464)
Q Consensus 59 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~li~~~~~~---~~~~~a~~~~~~m~~~~~~~~~~~~~ 134 (464)
+-|...|-.|...|...|+.+.|...|.+..+. +++...+..+..++... ....++..+|+++...+ +-|+.+..
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D-~~~iral~ 231 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALD-PANIRALS 231 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcC-CccHHHHH
Confidence 346666777777777777777777777666555 44555555555444332 22456666777776653 33455555
Q ss_pred HHHHHhcCCCCcccHHHHHHHHHhC
Q 044770 135 RLIILNSSPGRRKTIPNILRQMKAD 159 (464)
Q Consensus 135 ~l~~~~~~~~~~~~a~~~~~~~~~~ 159 (464)
-|...+...|++.+|...|+.|.+.
T Consensus 232 lLA~~afe~g~~~~A~~~Wq~lL~~ 256 (287)
T COG4235 232 LLAFAAFEQGDYAEAAAAWQMLLDL 256 (287)
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhc
Confidence 5666666777777777777777665
No 201
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=96.91 E-value=0.03 Score=47.53 Aligned_cols=101 Identities=12% Similarity=-0.076 Sum_probs=63.0
Q ss_pred CCchhhHHHHHHHhcCCCCcccHHHHHHHHHhCCCCCChhhHHHHHHHHHcc---CChhHHHHHHHHHHhCCCCCcHhHH
Q 044770 127 SISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEAND---HNIEGLMKVYSDMKRSEVEPNEVSY 203 (464)
Q Consensus 127 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~a~~~~~~m~~~~~~p~~~~~ 203 (464)
+-|...|-.|...|...|+.+.|..-|....+.. +++...+..+..++... ....++..+|+++.... +-|..+.
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D-~~~iral 230 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLRQALALD-PANIRAL 230 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcC-CccHHHH
Confidence 4466777777777777777777777777776643 44455555554444332 23446677777776653 2244555
Q ss_pred HHHHHHHHhcChhhHHHHHHHHHHhc
Q 044770 204 CILATAHAVARLYTVAETYVEALEKS 229 (464)
Q Consensus 204 ~~li~~~~~~~~~~~a~~~~~~~~~~ 229 (464)
..+...+...|++.+|...|+.|.+.
T Consensus 231 ~lLA~~afe~g~~~~A~~~Wq~lL~~ 256 (287)
T COG4235 231 SLLAFAAFEQGDYAEAAAAWQMLLDL 256 (287)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhc
Confidence 55666677777777777777777765
No 202
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.90 E-value=0.014 Score=45.21 Aligned_cols=72 Identities=14% Similarity=0.032 Sum_probs=48.0
Q ss_pred hHHHHHHHHHccCChhHHHHHHHHHHhCCCCCcHhHHHHHHHHHHhcChhhHHHHHHHHHH-----hccCCCChhhHH
Q 044770 167 TFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALE-----KSMTGNNWSTLD 239 (464)
Q Consensus 167 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~-----~~~~~~~~~~~~ 239 (464)
+...++..+...|++++|..+.+.+.... +.|...|..+|.++...|+...|.+.|+.+. +.|+.|+..+-.
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~~ 140 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETRA 140 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHHH
Confidence 44566777778888888888888887654 3467788888888888888888888888763 347777766543
No 203
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=96.90 E-value=0.19 Score=41.45 Aligned_cols=51 Identities=12% Similarity=0.057 Sum_probs=27.1
Q ss_pred HHHHHHhcCChHHHHHHHHHhHHHHhhhhhcCCCCcHHHHHHHHHHHHhcCChhhH
Q 044770 345 LALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNA 400 (464)
Q Consensus 345 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A 400 (464)
+..-|.+.|.+..|..-++.+++.. .+..........++.+|.+.|..+.|
T Consensus 147 ia~~Y~~~~~y~aA~~r~~~v~~~y-----p~t~~~~~al~~l~~~y~~l~~~~~a 197 (203)
T PF13525_consen 147 IARFYYKRGKYKAAIIRFQYVIENY-----PDTPAAEEALARLAEAYYKLGLKQAA 197 (203)
T ss_dssp HHHHHHCTT-HHHHHHHHHHHHHHS-----TTSHHHHHHHHHHHHHHHHTT-HHHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHHHC-----CCCchHHHHHHHHHHHHHHhCChHHH
Confidence 3445667777777777777775321 11111223445666777777766644
No 204
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.88 E-value=0.027 Score=48.17 Aligned_cols=98 Identities=15% Similarity=0.192 Sum_probs=66.2
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCccH----HHHHHHHHHHHhcCChHHHHHHHHHhHHHHhhhhhcCCCCcH
Q 044770 306 QYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNA----ITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWL 381 (464)
Q Consensus 306 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~p~~ 381 (464)
.|...+..+.+.|++++|...|+.+++. -|+. ..+..+...+...|++++|...|+.+++.. .+.....
T Consensus 145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~--yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~y-----P~s~~~~ 217 (263)
T PRK10803 145 DYNAAIALVQDKSRQDDAIVAFQNFVKK--YPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNY-----PKSPKAA 217 (263)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-----CCCcchh
Confidence 3555554445668888888888888774 2332 456677777888888888888888885321 1122223
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHHHHc
Q 044770 382 ETTLSIIEIFAEKGDVGNAENLFEELKKA 410 (464)
Q Consensus 382 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 410 (464)
..+-.+...+...|+.++|..+|+++.+.
T Consensus 218 dAl~klg~~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 218 DAMFKVGVIMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 34445666777888888998888888875
No 205
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.85 E-value=0.3 Score=43.17 Aligned_cols=81 Identities=16% Similarity=0.117 Sum_probs=38.7
Q ss_pred HHHHHHHhhcChhhHHHHHHHhccCCCCchhhHHHHHHHhhccCChHHHHHHHHHHHhccccCChhhHHHHHHHHHhcCC
Q 044770 240 VLIILYGYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGF 319 (464)
Q Consensus 240 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~ 319 (464)
..+.-+...|+...|.++.... .-++..-|-.-+.+|+..++|++-.++-.. ..++..|..++.+|.+.|+
T Consensus 182 ~Ti~~li~~~~~k~A~kl~k~F---kv~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~~~ 252 (319)
T PF04840_consen 182 DTIRKLIEMGQEKQAEKLKKEF---KVPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKYGN 252 (319)
T ss_pred HHHHHHHHCCCHHHHHHHHHHc---CCcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHCCC
Confidence 3344444455554444443333 112333344555555555555554443221 1233455555555555555
Q ss_pred hhHHHHHHHH
Q 044770 320 IDKASGLLKE 329 (464)
Q Consensus 320 ~~~a~~~~~~ 329 (464)
..+|..+...
T Consensus 253 ~~eA~~yI~k 262 (319)
T PF04840_consen 253 KKEASKYIPK 262 (319)
T ss_pred HHHHHHHHHh
Confidence 5555555544
No 206
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=96.81 E-value=0.0053 Score=40.27 Aligned_cols=59 Identities=22% Similarity=0.326 Sum_probs=28.1
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCc-cHHHHHHHHHHHHhcC-ChHHHHHHHHHhH
Q 044770 306 QYNSVISVYCKNGFIDKASGLLKEMSMNGCKP-NAITYRHLALGCFKSN-LVEEGFKALELGM 366 (464)
Q Consensus 306 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~ 366 (464)
.|..+...+...|++++|+..|.+.++. .| +...|..+..++...| ++++|+..++.++
T Consensus 5 ~~~~~g~~~~~~~~~~~A~~~~~~ai~~--~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al 65 (69)
T PF13414_consen 5 AWYNLGQIYFQQGDYEEAIEYFEKAIEL--DPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKAL 65 (69)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHHHHHH--STTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHH
Confidence 4444445555555555555555555442 22 3334444444444554 4555555555443
No 207
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.81 E-value=0.018 Score=49.24 Aligned_cols=95 Identities=11% Similarity=0.103 Sum_probs=54.9
Q ss_pred HHHHHHHHhhcchHHHHHHHHHHHHcCCCCC-CchhHHHHHHHHHhhcChHHHHHHhhhcCCCCCc----hhHHHHHHHH
Q 044770 30 FHSINRLRKLQLNKRALEVMEWVIRERPYRP-KELDYSYLLEFTIKNHGISQGEKLFCCIPKDYQN----ELLYNNLVIA 104 (464)
Q Consensus 30 ~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~----~~~~~~li~~ 104 (464)
...+..+.+.|++++|...|+.+.+..+-.+ ....+-.+...|...|++++|...|+.+....|+ ...+-.+...
T Consensus 147 ~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~ 226 (263)
T PRK10803 147 NAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVI 226 (263)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHH
Confidence 3333333555777777777777766432111 0235556666666777777777777666554332 3344445555
Q ss_pred HHhhCcHHHHHHHHHHHHHc
Q 044770 105 CLDKGVIKLSLEYMKKMRVL 124 (464)
Q Consensus 105 ~~~~~~~~~a~~~~~~m~~~ 124 (464)
+...|+.++|..+|+.+.+.
T Consensus 227 ~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 227 MQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HHHcCCHHHHHHHHHHHHHH
Confidence 66667777777777666654
No 208
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=96.80 E-value=0.0092 Score=39.09 Aligned_cols=63 Identities=17% Similarity=0.089 Sum_probs=37.5
Q ss_pred hhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCcHhHHHHHHHHHHhcC-hhhHHHHHHHHHHh
Q 044770 165 VSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVAR-LYTVAETYVEALEK 228 (464)
Q Consensus 165 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~-~~~~a~~~~~~~~~ 228 (464)
..+|..+...+...|++++|+..|++..+.. +-+...|..+..++.+.| ++++|+..+++..+
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 3455556666666666666666666665543 224455566666666666 56666666665544
No 209
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=96.77 E-value=0.01 Score=52.16 Aligned_cols=262 Identities=10% Similarity=-0.055 Sum_probs=155.7
Q ss_pred HHHHhhcchHHHHHHHHHHHHcCCCCCCc----hhHHHHHHHHHhhcChHHHHHHhhh-------cCCCCCchhHHHHHH
Q 044770 34 NRLRKLQLNKRALEVMEWVIRERPYRPKE----LDYSYLLEFTIKNHGISQGEKLFCC-------IPKDYQNELLYNNLV 102 (464)
Q Consensus 34 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~a~~~~~~-------~~~~~~~~~~~~~li 102 (464)
..+++.|+.+..+.+|+..++ .|. -|. .+|..|.++|.-.+++++|.++-.. +-...-...+...|.
T Consensus 25 ERLck~gdcraGv~ff~aA~q-vGT-eDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLG 102 (639)
T KOG1130|consen 25 ERLCKMGDCRAGVDFFKAALQ-VGT-EDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLG 102 (639)
T ss_pred HHHHhccchhhhHHHHHHHHH-hcc-hHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhcccccccccc
Confidence 468899999999999999988 332 222 3466777777778888888876432 111111222333444
Q ss_pred HHHHhhCcHHHHHHHHHHH----HHcCC-CCchhhHHHHHHHhcCCCC--------------------cccHHHHHHHHH
Q 044770 103 IACLDKGVIKLSLEYMKKM----RVLGH-SISYLVFNRLIILNSSPGR--------------------RKTIPNILRQMK 157 (464)
Q Consensus 103 ~~~~~~~~~~~a~~~~~~m----~~~~~-~~~~~~~~~l~~~~~~~~~--------------------~~~a~~~~~~~~ 157 (464)
..+-..|.+++|+-...+- .+.|- ......+-.+...|...|+ ++.|.++|.+-+
T Consensus 103 NtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL 182 (639)
T KOG1130|consen 103 NTLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENL 182 (639)
T ss_pred chhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHH
Confidence 4555566777765543222 22221 1123344456666665543 222334443322
Q ss_pred h----CCC-CCChhhHHHHHHHHHccCChhHHHHHHHHHH----hCCC-CCcHhHHHHHHHHHHhcChhhHHHHHHHHHH
Q 044770 158 A----DKV-APHVSTFHILMKIEANDHNIEGLMKVYSDMK----RSEV-EPNEVSYCILATAHAVARLYTVAETYVEALE 227 (464)
Q Consensus 158 ~----~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~----~~~~-~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 227 (464)
+ .|- -.....|..|.+.|--.|+++.|+...+.-. +-|- ......+..+.+++.-.|+++.|.+.|+...
T Consensus 183 ~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl 262 (639)
T KOG1130|consen 183 ELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTL 262 (639)
T ss_pred HHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHH
Confidence 1 110 0112345556666666788898887655432 2231 1234567788888999999999999888754
Q ss_pred hc----c-CCCChhhHHHHHHHHHhhcChhhHHHHHHHhcc------CCCCchhhHHHHHHHhhccCChHHHHHHHHHHH
Q 044770 228 KS----M-TGNNWSTLDVLIILYGYLAKGKDLERIWATVQE------LPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQ 296 (464)
Q Consensus 228 ~~----~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~------~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 296 (464)
.. | -.......-++.+.|.-..+++.|+.++.+-.. ........+-+|..+|...|..++|+.+.+.-.
T Consensus 263 ~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl 342 (639)
T KOG1130|consen 263 NLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHL 342 (639)
T ss_pred HHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 32 2 122345556677777777888888887765322 222334467788999999999999888776654
Q ss_pred h
Q 044770 297 S 297 (464)
Q Consensus 297 ~ 297 (464)
+
T Consensus 343 ~ 343 (639)
T KOG1130|consen 343 R 343 (639)
T ss_pred H
Confidence 3
No 210
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=96.76 E-value=0.54 Score=44.85 Aligned_cols=117 Identities=15% Similarity=0.086 Sum_probs=59.8
Q ss_pred CCCchhHHHHHHHHHhhcChHHHHHHhhhcCCCCCchh------------HHHHHHHHHHhhCcHHHHHHHHHHHHHcCC
Q 044770 59 RPKELDYSYLLEFTIKNHGISQGEKLFCCIPKDYQNEL------------LYNNLVIACLDKGVIKLSLEYMKKMRVLGH 126 (464)
Q Consensus 59 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~------------~~~~li~~~~~~~~~~~a~~~~~~m~~~~~ 126 (464)
.|-+..|..+.......-.++-|...|-+...- +... .-.+=+.+| -|++++|.++|-+|-++++
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY-~Gik~vkrl~~i~s~~~q~aei~~~--~g~feeaek~yld~drrDL 765 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDY-AGIKLVKRLRTIHSKEQQRAEISAF--YGEFEEAEKLYLDADRRDL 765 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccc-cchhHHHHhhhhhhHHHHhHhHhhh--hcchhHhhhhhhccchhhh
Confidence 356667777777666666677776666554332 1111 111112222 3677777777766665432
Q ss_pred CCchhhHHHHHHHhcCCCCcccHHHHHHHHHhCCCCC----ChhhHHHHHHHHHccCChhHHHHHHHH
Q 044770 127 SISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAP----HVSTFHILMKIEANDHNIEGLMKVYSD 190 (464)
Q Consensus 127 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~ 190 (464)
.+..+.+.|+|-.+.++++. .|-.. -...|+.+.+.+.....|++|.++|..
T Consensus 766 ---------Aielr~klgDwfrV~qL~r~---g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~ 821 (1189)
T KOG2041|consen 766 ---------AIELRKKLGDWFRVYQLIRN---GGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSY 821 (1189)
T ss_pred ---------hHHHHHhhhhHHHHHHHHHc---cCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 23444455555444444322 11111 123455566666666666666655544
No 211
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=96.72 E-value=0.022 Score=47.53 Aligned_cols=118 Identities=16% Similarity=0.152 Sum_probs=76.4
Q ss_pred HHHHHhhhcCCCCCchhHHHHHHHHHHhh-----CcHHHHHHHHHHHHHcCCCCchhhHHHHHHHhcCCCCcccHHHHHH
Q 044770 80 QGEKLFCCIPKDYQNELLYNNLVIACLDK-----GVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILR 154 (464)
Q Consensus 80 ~a~~~~~~~~~~~~~~~~~~~li~~~~~~-----~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 154 (464)
.....|..+.....+..+|-..+..+... +.++-....+..|.+-|+.-|..+|+.|++.+-+..
T Consensus 52 ~~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgk---------- 121 (406)
T KOG3941|consen 52 HVEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGK---------- 121 (406)
T ss_pred chhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccc----------
Confidence 34455666654445667777777666543 566777777888999999999999999988765432
Q ss_pred HHHhCCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCcHhHHHHHHHHHHhcChh
Q 044770 155 QMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLY 216 (464)
Q Consensus 155 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~ 216 (464)
+.|....-..+++ |- .+-+-+++++++|...|+.||..+-..+++++.+.+..
T Consensus 122 ------fiP~nvfQ~~F~H-YP--~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p 174 (406)
T KOG3941|consen 122 ------FIPQNVFQKVFLH-YP--QQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFP 174 (406)
T ss_pred ------cccHHHHHHHHhh-Cc--hhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhcccccc
Confidence 1222221111111 21 22344677888888888888888888888888776654
No 212
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=96.72 E-value=0.1 Score=38.28 Aligned_cols=66 Identities=12% Similarity=-0.043 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHhHHHHhhhhhcCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCC
Q 044770 340 ITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYT 413 (464)
Q Consensus 340 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 413 (464)
..+...+......|+-+.-.++..... + .-.+++...-.+..+|.+.|+..++.+++.+..+.|++
T Consensus 87 e~vD~ALd~lv~~~kkDqLdki~~~l~-------k-n~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 87 EYVDLALDILVKQGKKDQLDKIYNELK-------K-NEEINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHH-------------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHh-------h-ccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 334455566667777777777776662 1 44556666667778888888888888888888877753
No 213
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=96.57 E-value=0.49 Score=41.86 Aligned_cols=304 Identities=13% Similarity=0.018 Sum_probs=137.4
Q ss_pred HHHHHHHHHHHHcCCCCCCchhHHHHHHHHH--hhcChHHHHHHhhhcCCC-CCchhHHHHHHH--HHHhhCcHHHHHHH
Q 044770 43 KRALEVMEWVIRERPYRPKELDYSYLLEFTI--KNHGISQGEKLFCCIPKD-YQNELLYNNLVI--ACLDKGVIKLSLEY 117 (464)
Q Consensus 43 ~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~g~~~~a~~~~~~~~~~-~~~~~~~~~li~--~~~~~~~~~~a~~~ 117 (464)
..+.+.|..-.+.. .|..|-.++. -.|+-..|.++-.+..+. ..|......++. +-.-.|+++.|.+-
T Consensus 70 ~t~~Ryfr~rKRdr-------gyqALStGliAagAGda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~k 142 (531)
T COG3898 70 YTARRYFRERKRDR-------GYQALSTGLIAAGAGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKK 142 (531)
T ss_pred HHHHHHHHHHHhhh-------HHHHHhhhhhhhccCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHH
Confidence 44555555544422 2344444333 345555666555544322 223333333332 23335666777777
Q ss_pred HHHHHHcCCCCchh--hHHHHHHHhcCCCCcccHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhCC
Q 044770 118 MKKMRVLGHSISYL--VFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSE 195 (464)
Q Consensus 118 ~~~m~~~~~~~~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~ 195 (464)
|+.|... |... -...|.-..-+.|+.+.|..+-+..-... +.-...+...+...+..|+|+.|+++.+.-.+..
T Consensus 143 feAMl~d---PEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~ 218 (531)
T COG3898 143 FEAMLDD---PETRLLGLRGLYLEAQRLGAREAARHYAERAAEKA-PQLPWAARATLEARCAAGDWDGALKLVDAQRAAK 218 (531)
T ss_pred HHHHhcC---hHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhc-cCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHH
Confidence 7666642 1111 12222222335566666666555554332 2223455566666666677777776666554433
Q ss_pred -CCCcHhH--HHHHHHHHH---hcChhhHHHHHHHHHHhccCCCChh-hHHHHHHHHHhhcChhhHHHHHHHhcc-CCCC
Q 044770 196 -VEPNEVS--YCILATAHA---VARLYTVAETYVEALEKSMTGNNWS-TLDVLIILYGYLAKGKDLERIWATVQE-LPNV 267 (464)
Q Consensus 196 -~~p~~~~--~~~li~~~~---~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~ 267 (464)
+.++..- -..|+.+-. -..+...|...-.+..+ ..|+.. .-..-..++.+.|+..++-.+++.+-+ .+.+
T Consensus 219 vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP 296 (531)
T COG3898 219 VIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHP 296 (531)
T ss_pred hhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCCh
Confidence 3333321 112222211 11233344444333332 233321 112233556666666666666665544 3333
Q ss_pred chhhHHHHHHHhhccCChHHHHHHHHHHHhc-cccC-ChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCccHHHHHHH
Q 044770 268 RSKSYVLAIEAFGRIAQVSRAEELWLEMQSV-KQLK-ATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHL 345 (464)
Q Consensus 268 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l 345 (464)
+. ..+..+.+.|+... .=+++.... ..+| +..+.-.+..+-...|++..|..--+.... ..|....|..+
T Consensus 297 ~i----a~lY~~ar~gdta~--dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r--~~pres~~lLl 368 (531)
T COG3898 297 DI----ALLYVRARSGDTAL--DRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAR--EAPRESAYLLL 368 (531)
T ss_pred HH----HHHHHHhcCCCcHH--HHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhh--hCchhhHHHHH
Confidence 32 22233334443321 112111110 1112 334444455555556666655554444443 45555555555
Q ss_pred HHHH-HhcCChHHHHHHHHHhHH
Q 044770 346 ALGC-FKSNLVEEGFKALELGMK 367 (464)
Q Consensus 346 l~~~-~~~~~~~~a~~~~~~~~~ 367 (464)
...- ...|+-.++.+.+.+.++
T Consensus 369 AdIeeAetGDqg~vR~wlAqav~ 391 (531)
T COG3898 369 ADIEEAETGDQGKVRQWLAQAVK 391 (531)
T ss_pred HHHHhhccCchHHHHHHHHHHhc
Confidence 5543 333666666666666654
No 214
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.55 E-value=0.059 Score=50.45 Aligned_cols=86 Identities=14% Similarity=0.005 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHhHHHHhhhhhcCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCcHH-H
Q 044770 340 ITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTF-V 418 (464)
Q Consensus 340 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~-~ 418 (464)
.+...+...+.+...+..|-++|..+- .. .++++.....++|.+|..+-+...+. .||+. -
T Consensus 748 e~l~~~a~ylk~l~~~gLAaeIF~k~g---------D~-------ksiVqlHve~~~W~eAFalAe~hPe~--~~dVy~p 809 (1081)
T KOG1538|consen 748 EPLLLCATYLKKLDSPGLAAEIFLKMG---------DL-------KSLVQLHVETQRWDEAFALAEKHPEF--KDDVYMP 809 (1081)
T ss_pred hHHHHHHHHHhhccccchHHHHHHHhc---------cH-------HHHhhheeecccchHhHhhhhhCccc--cccccch
Confidence 344444444555566666667776661 11 14556666667777776666655542 23333 1
Q ss_pred ----------HHHHHHHHHHcCCC--hhHHHHHHHhC
Q 044770 419 ----------YNTLIKAYVKAKIN--DPNLLRRMILG 443 (464)
Q Consensus 419 ----------~~~li~~~~~~g~~--a~~~~~~m~~~ 443 (464)
|...-++|.+.|+. |.++++++...
T Consensus 810 yaqwLAE~DrFeEAqkAfhkAGr~~EA~~vLeQLtnn 846 (1081)
T KOG1538|consen 810 YAQWLAENDRFEEAQKAFHKAGRQREAVQVLEQLTNN 846 (1081)
T ss_pred HHHHhhhhhhHHHHHHHHHHhcchHHHHHHHHHhhhh
Confidence 23334566666653 66666666544
No 215
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.50 E-value=0.39 Score=40.86 Aligned_cols=164 Identities=9% Similarity=0.048 Sum_probs=95.5
Q ss_pred hhhHHHHhhcCccChhchHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCCchhHHHHHHHHHhhcChHHHHHHhhhcCCC
Q 044770 12 SAFQSWMREGFPVHRGEIFHSINRLRKLQLNKRALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQGEKLFCCIPKD 91 (464)
Q Consensus 12 ~~l~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 91 (464)
+.+++|...-.++....-..-...+...|++.+|..+|+......+ -+...--.+..+|...|+.+.|..++..++..
T Consensus 120 sqlr~~ld~~~~~~~e~~~~~~~~~~~~e~~~~a~~~~~~al~~~~--~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~ 197 (304)
T COG3118 120 SQLRQFLDKVLPAEEEEALAEAKELIEAEDFGEAAPLLKQALQAAP--ENSEAKLLLAECLLAAGDVEAAQAILAALPLQ 197 (304)
T ss_pred HHHHHHHHHhcChHHHHHHHHhhhhhhccchhhHHHHHHHHHHhCc--ccchHHHHHHHHHHHcCChHHHHHHHHhCccc
Confidence 3566677765555555555666677788999999999998887442 23556677788889999999999999998875
Q ss_pred CCch--hHHHHHHHHHHhhCcHHHHHHHHHHHHHcCCCCchhhHHHHHHHhcCCCCcccHHHHHHHHHhC--CCCCChhh
Q 044770 92 YQNE--LLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKAD--KVAPHVST 167 (464)
Q Consensus 92 ~~~~--~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~ 167 (464)
..+. .....-|..+.+.....+...+-...-.. +-|...-..+...+...|+.+.|.+.+-.+.+. | .-|...
T Consensus 198 ~~~~~~~~l~a~i~ll~qaa~~~~~~~l~~~~aad--Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~-~~d~~~ 274 (304)
T COG3118 198 AQDKAAHGLQAQIELLEQAAATPEIQDLQRRLAAD--PDDVEAALALADQLHLVGRNEAALEHLLALLRRDRG-FEDGEA 274 (304)
T ss_pred chhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccc-ccCcHH
Confidence 2221 11112233333333333333333333221 224555555666666667666666655555432 2 233334
Q ss_pred HHHHHHHHHccCC
Q 044770 168 FHILMKIEANDHN 180 (464)
Q Consensus 168 ~~~l~~~~~~~~~ 180 (464)
-..|+..+.-.|.
T Consensus 275 Rk~lle~f~~~g~ 287 (304)
T COG3118 275 RKTLLELFEAFGP 287 (304)
T ss_pred HHHHHHHHHhcCC
Confidence 4445555444443
No 216
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.49 E-value=0.016 Score=39.08 Aligned_cols=64 Identities=22% Similarity=0.296 Sum_probs=42.3
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHhC----CC-Ccc-HHHHHHHHHHHHhcCChHHHHHHHHHhHHH
Q 044770 305 EQYNSVISVYCKNGFIDKASGLLKEMSMN----GC-KPN-AITYRHLALGCFKSNLVEEGFKALELGMKL 368 (464)
Q Consensus 305 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~----g~-~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 368 (464)
.+|+.+...|...|++++|+..|++..+. |- .|+ ..++..+...+...|++++|++++++++++
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 35667777777777777777777766542 11 122 456677777788888888888888877543
No 217
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=96.47 E-value=0.062 Score=39.97 Aligned_cols=53 Identities=8% Similarity=-0.137 Sum_probs=36.3
Q ss_pred CCccHHHHHHHHHHHHhcCChHHHHHHHHHhHHHHhhhhhcCCCCcHHHHHHHHHHHHh
Q 044770 335 CKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAE 393 (464)
Q Consensus 335 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~ 393 (464)
..|+..+..+++.+|+..+++..|.++.+... ...+++.+..+|..|+.-...
T Consensus 48 l~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs------~~Y~I~i~~~~W~~Ll~W~~v 100 (126)
T PF12921_consen 48 LYPTSRLLIAIVHSFGYNGDIFSALKLVDFFS------RKYPIPIPKEFWRRLLEWAYV 100 (126)
T ss_pred CCCCHHHHHHHHHHHHhcccHHHHHHHHHHHH------HHcCCCCCHHHHHHHHHHHHH
Confidence 55777777777777777777777777777774 344566666777766665443
No 218
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.44 E-value=0.024 Score=37.62 Aligned_cols=56 Identities=11% Similarity=0.000 Sum_probs=38.0
Q ss_pred HHhhccCChHHHHHHHHHHHhccccCChhhHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 044770 277 EAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMN 333 (464)
Q Consensus 277 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 333 (464)
..|.+.++++.|.++++.+...+ +.++..|.....++...|++++|...|+...+.
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~ 58 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELD-PDDPELWLQRARCLFQLGRYEEALEDLERALEL 58 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhC-cccchhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 35566777777777777777643 335666666777777777777777777777763
No 219
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.43 E-value=0.013 Score=38.84 Aligned_cols=22 Identities=18% Similarity=-0.093 Sum_probs=8.9
Q ss_pred HHHHHHhcChhhHHHHHHHHHH
Q 044770 206 LATAHAVARLYTVAETYVEALE 227 (464)
Q Consensus 206 li~~~~~~~~~~~a~~~~~~~~ 227 (464)
...++.+.|++++|...++...
T Consensus 35 ~a~~~~~~g~~~~A~~~l~~~l 56 (73)
T PF13371_consen 35 RARCLFQLGRYEEALEDLERAL 56 (73)
T ss_pred HHHHHHHhccHHHHHHHHHHHH
Confidence 3333444444444444444433
No 220
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=96.43 E-value=0.12 Score=46.91 Aligned_cols=64 Identities=11% Similarity=-0.031 Sum_probs=39.7
Q ss_pred chhhHHHHHHHhhccCChHHHHHHHHHHHhccccCCh----hhHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 044770 268 RSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKAT----EQYNSVISVYCKNGFIDKASGLLKEMSMN 333 (464)
Q Consensus 268 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 333 (464)
+...++.+..+|...|++++|...|++..+.. |+. .+|..+..+|...|+.++|+..+++.++.
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~--Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALELN--PNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 34456666666666677777777666666532 332 23666666666666666666666666653
No 221
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=96.41 E-value=0.57 Score=40.83 Aligned_cols=225 Identities=13% Similarity=0.074 Sum_probs=120.0
Q ss_pred HccCChhHHHHHHHHHHhCC--CCCcH------hHHHHHHHHHHhcC-hhhHHHHHHHHHHhc--------cCCCC----
Q 044770 176 ANDHNIEGLMKVYSDMKRSE--VEPNE------VSYCILATAHAVAR-LYTVAETYVEALEKS--------MTGNN---- 234 (464)
Q Consensus 176 ~~~~~~~~a~~~~~~m~~~~--~~p~~------~~~~~li~~~~~~~-~~~~a~~~~~~~~~~--------~~~~~---- 234 (464)
.+.|+.+.|..++.+..... ..|+. ..|+.-. ...+.+ +++.|..++++..+. ...++
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~-~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~el 82 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGK-SLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSEL 82 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHH-HHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHH
Confidence 45677777777777665432 22221 1122222 223445 777777776665332 12222
Q ss_pred -hhhHHHHHHHHHhhcChh---hHHHHHHHhccCCCCchhhHHHHHHHhhccCChHHHHHHHHHHHhccccCChhhHHHH
Q 044770 235 -WSTLDVLIILYGYLAKGK---DLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSV 310 (464)
Q Consensus 235 -~~~~~~l~~~~~~~~~~~---~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 310 (464)
..++..++.++...+..+ .|.++++.+....+..+.++..-+..+.+.++.+.+.+++.+|... +......+..+
T Consensus 83 r~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~-~~~~e~~~~~~ 161 (278)
T PF08631_consen 83 RLSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRS-VDHSESNFDSI 161 (278)
T ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHh-cccccchHHHH
Confidence 245566777777777654 4455566665555555555666677777788999999999999884 33233456666
Q ss_pred HHHHHh--cCChhHHHHHHHHHHhCCCCccHH-HHHH-HHHH---HHhcCC------hHHHHHHHHHhHHHHhhhhhcCC
Q 044770 311 ISVYCK--NGFIDKASGLLKEMSMNGCKPNAI-TYRH-LALG---CFKSNL------VEEGFKALELGMKLITTKKVRSS 377 (464)
Q Consensus 311 i~~~~~--~~~~~~a~~~~~~m~~~g~~p~~~-~~~~-ll~~---~~~~~~------~~~a~~~~~~~~~~~~~~~~~~~ 377 (464)
+..+.. ......+...+..+....+.|... .... ++.. ....++ .+...++++... ...+.
T Consensus 162 l~~i~~l~~~~~~~a~~~ld~~l~~r~~~~~~~~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~------~~~~~ 235 (278)
T PF08631_consen 162 LHHIKQLAEKSPELAAFCLDYLLLNRFKSSEDQWLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVE------HSLGK 235 (278)
T ss_pred HHHHHHHHhhCcHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHH------HHhcC
Confidence 655522 233456777777776655565553 1111 1111 122222 333334444321 11222
Q ss_pred CCcHHHHHHH-------HHHHHhcCChhhHHHHHHHHH
Q 044770 378 TPWLETTLSI-------IEIFAEKGDVGNAENLFEELK 408 (464)
Q Consensus 378 ~p~~~~~~~l-------i~~~~~~g~~~~A~~~~~~m~ 408 (464)
+.+..+-.++ ...+.+.+++++|.+.|+-..
T Consensus 236 ~ls~~~~~a~~~LLW~~~~~~~~~k~y~~A~~w~~~al 273 (278)
T PF08631_consen 236 QLSAEAASAIHTLLWNKGKKHYKAKNYDEAIEWYELAL 273 (278)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Confidence 3333332222 233556889999999887544
No 222
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.34 E-value=0.035 Score=42.96 Aligned_cols=75 Identities=16% Similarity=0.098 Sum_probs=45.4
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCccHHHHHHHHHHHHhcCChHHHHHHHHHhHHHHhhhhhcCCCCcHHH
Q 044770 306 QYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLET 383 (464)
Q Consensus 306 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~p~~~~ 383 (464)
+...++..+...|++++|..+.+.+.... +.|...|..+|.++...|+...|.++|+.+.+... ...|+.|+..+
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~--~elg~~Ps~~~ 138 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLR--EELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHH--HHHS----HHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHH--HHhCcCcCHHH
Confidence 45556666677777777777777777642 22566777777777777777777777777755433 34577776654
No 223
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=96.28 E-value=0.83 Score=41.37 Aligned_cols=259 Identities=10% Similarity=0.064 Sum_probs=142.4
Q ss_pred HHHhhcchHHHHHHHHHHHHcCCCCCCc----hhHHHHHHHHHhhcChHHHHHHhhhcCCCCCchhHHHHHHHH--HHhh
Q 044770 35 RLRKLQLNKRALEVMEWVIRERPYRPKE----LDYSYLLEFTIKNHGISQGEKLFCCIPKDYQNELLYNNLVIA--CLDK 108 (464)
Q Consensus 35 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~li~~--~~~~ 108 (464)
.+.+++++.+|..+|..+.+...-.|.. ..-+.++++|.- .+++.....+....+..| ...|-.+..+ +-+.
T Consensus 15 ~Lqkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl-~nld~Me~~l~~l~~~~~-~s~~l~LF~~L~~Y~~ 92 (549)
T PF07079_consen 15 ILQKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFL-NNLDLMEKQLMELRQQFG-KSAYLPLFKALVAYKQ 92 (549)
T ss_pred HHHHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHH-hhHHHHHHHHHHHHHhcC-CchHHHHHHHHHHHHh
Confidence 4558899999999999998743212211 123456666653 456666666665555434 3344444443 3467
Q ss_pred CcHHHHHHHHHHHHHc--CCCC------------chhhHHHHHHHhcCCCCcccHHHHHHHHHhC----CCCCChhhHHH
Q 044770 109 GVIKLSLEYMKKMRVL--GHSI------------SYLVFNRLIILNSSPGRRKTIPNILRQMKAD----KVAPHVSTFHI 170 (464)
Q Consensus 109 ~~~~~a~~~~~~m~~~--~~~~------------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~ 170 (464)
+++.+|++.+..-..+ +..| |...=+..+..+...|++.++..+++++... ...-+..+|+.
T Consensus 93 k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~ 172 (549)
T PF07079_consen 93 KEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDR 172 (549)
T ss_pred hhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHH
Confidence 8899999988776654 3222 2222345667788999999999999888764 33478888888
Q ss_pred HHHHHHccC--------Ch-------hHHHHHHHHHHhC------CCCCcHhHHHHHHHHHHhc--ChhhHHHHHHHHHH
Q 044770 171 LMKIEANDH--------NI-------EGLMKVYSDMKRS------EVEPNEVSYCILATAHAVA--RLYTVAETYVEALE 227 (464)
Q Consensus 171 l~~~~~~~~--------~~-------~~a~~~~~~m~~~------~~~p~~~~~~~li~~~~~~--~~~~~a~~~~~~~~ 227 (464)
++-.+.+.- .. +-+.-+..+|... .+.|.......++....-. .+..--+++++.-.
T Consensus 173 ~vlmlsrSYfLEl~e~~s~dl~pdyYemilfY~kki~~~d~~~Y~k~~peeeL~s~imqhlfi~p~e~l~~~mq~l~~We 252 (549)
T PF07079_consen 173 AVLMLSRSYFLELKESMSSDLYPDYYEMILFYLKKIHAFDQRPYEKFIPEEELFSTIMQHLFIVPKERLPPLMQILENWE 252 (549)
T ss_pred HHHHHhHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHhhchHHhhCcHHHHHHHHHHHHHhCCHhhccHHHHHHHHHH
Confidence 665555421 11 1122222222211 1233333333333332211 11222333444334
Q ss_pred hccCCCChh-hHHHHHHHHHhhcChhhHHHHHHHhccC-----CCCchhhHHHHHHHhhccCChHHHHHHHHHHHh
Q 044770 228 KSMTGNNWS-TLDVLIILYGYLAKGKDLERIWATVQEL-----PNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQS 297 (464)
Q Consensus 228 ~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 297 (464)
..-+.|+-. +...+...+.. +.+++..+.+.+... ...-..+|..++....+.++...|.+.+.-+..
T Consensus 253 ~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~ 326 (549)
T PF07079_consen 253 NFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALLKI 326 (549)
T ss_pred hhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHh
Confidence 444455432 23333333333 555665555554432 111223577777888888888999888887765
No 224
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.17 E-value=0.91 Score=40.77 Aligned_cols=173 Identities=12% Similarity=0.018 Sum_probs=108.5
Q ss_pred chhhHHHHHHHhhccCChHHHHHHHHHHHhcc---ccCChhhHHHHHHHHHh---cCChhHHHHHHHHHHhCCCCccHHH
Q 044770 268 RSKSYVLAIEAFGRIAQVSRAEELWLEMQSVK---QLKATEQYNSVISVYCK---NGFIDKASGLLKEMSMNGCKPNAIT 341 (464)
Q Consensus 268 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~~~~~li~~~~~---~~~~~~a~~~~~~m~~~g~~p~~~~ 341 (464)
+..+...++-+|....+++...++.+.+...- +.-....--...-++.+ .|+.++|++++..+....-.+++.+
T Consensus 140 s~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~ 219 (374)
T PF13281_consen 140 SPDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDT 219 (374)
T ss_pred ChhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHH
Confidence 34445567778999999999999999998741 11122222234456667 8999999999999776667788888
Q ss_pred HHHHHHHHHh---------cCChHHHHHHHHHhHHHHhhhhhcCCCCcHHHHHHHHHHHHhcCChh----hHHHHH---H
Q 044770 342 YRHLALGCFK---------SNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVG----NAENLF---E 405 (464)
Q Consensus 342 ~~~ll~~~~~---------~~~~~~a~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~----~A~~~~---~ 405 (464)
|..+...|-. ....++|+..|.+. ..+.|+...--.++..+...|... +..++- .
T Consensus 220 ~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kg---------Fe~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~ 290 (374)
T PF13281_consen 220 LGLLGRIYKDLFLESNFTDRESLDKAIEWYRKG---------FEIEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLS 290 (374)
T ss_pred HHHHHHHHHHHHHHcCccchHHHHHHHHHHHHH---------HcCCccccchHHHHHHHHHcCCcccchHHHHHHHHHHH
Confidence 8887766532 22466777777766 445565544223333333344322 222332 1
Q ss_pred -HHHHcCC-C--CcHHHHHHHHHHHHHcCCC--hhHHHHHHHhCCCCCCHH
Q 044770 406 -ELKKANY-T--KYTFVYNTLIKAYVKAKIN--DPNLLRRMILGGARPDAE 450 (464)
Q Consensus 406 -~m~~~~~-~--p~~~~~~~li~~~~~~g~~--a~~~~~~m~~~~~~p~~~ 450 (464)
.+.+.|. . .+-..+.+++.++.-.|+. |.+..+.|.+.. +|..+
T Consensus 291 ~llg~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~-~~~W~ 340 (374)
T PF13281_consen 291 SLLGRKGSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLK-PPAWE 340 (374)
T ss_pred HHHHhhccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcC-Ccchh
Confidence 1223332 2 2333667889999999985 889999999774 55544
No 225
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=96.16 E-value=1.2 Score=42.05 Aligned_cols=249 Identities=9% Similarity=-0.042 Sum_probs=140.6
Q ss_pred HHHHHHHHHhcChhhHHHHHHHHHHhccCCCCh------hhHHHHHHHHHh----hcChhhHHHHHHHhccCCCCchhhH
Q 044770 203 YCILATAHAVARLYTVAETYVEALEKSMTGNNW------STLDVLIILYGY----LAKGKDLERIWATVQELPNVRSKSY 272 (464)
Q Consensus 203 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~ 272 (464)
+..++....=.|+-+.+++.+.+..+.+---.+ -+|..++..++. ..+.+.+.++++.+....|....-.
T Consensus 191 ~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~yP~s~lfl 270 (468)
T PF10300_consen 191 VLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRYPNSALFL 270 (468)
T ss_pred HHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhCCCcHHHH
Confidence 334455555568888888888776553221122 123333333333 3456778888888888766655444
Q ss_pred HHHHHHhhccCChHHHHHHHHHHHhcc---ccCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCccHHHHHHHHHH-
Q 044770 273 VLAIEAFGRIAQVSRAEELWLEMQSVK---QLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALG- 348 (464)
Q Consensus 273 ~~l~~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~- 348 (464)
-.-.+.+...|++++|.+.|+...... .+.....+--+...+.-..+|++|.+.|..+.+.. ..+..+|.-+..+
T Consensus 271 ~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s-~WSka~Y~Y~~a~c 349 (468)
T PF10300_consen 271 FFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES-KWSKAFYAYLAAAC 349 (468)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc-ccHHHHHHHHHHHH
Confidence 445667778999999999999755311 11123345556677888999999999999999853 3345555554444
Q ss_pred HHhcCCh-------HHHHHHHHHhHHHHhhhhhcCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCcHHHHHH
Q 044770 349 CFKSNLV-------EEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNT 421 (464)
Q Consensus 349 ~~~~~~~-------~~a~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ 421 (464)
+...++. ++|..+|.++-.+...... ...|....-..-+.-|.+.+. ..+.+ ..++.| ..-...
T Consensus 350 ~~~l~~~~~~~~~~~~a~~l~~~vp~l~~k~~g-k~lp~E~Fv~RK~~~~~~~~~----~~~~d---~~~~~p-~~El~y 420 (468)
T PF10300_consen 350 LLMLGREEEAKEHKKEAEELFRKVPKLKQKKAG-KSLPLEKFVIRKAQKYEKQAK----VDLVD---AILVLP-ALELMY 420 (468)
T ss_pred HHhhccchhhhhhHHHHHHHHHHHHHHHhhhcc-CCCChHHHHHHHHHHHHhcCC----Ccchh---hhhcCH-HHHHHH
Confidence 3456777 8888888888655433222 233332222233333333322 11111 111111 222333
Q ss_pred HHHHHHHcCCChh--HHHHHHHhC---CCCCCHHHHHHHHHHHHh
Q 044770 422 LIKAYVKAKINDP--NLLRRMILG---GARPDAETYSLLKLAEQF 461 (464)
Q Consensus 422 li~~~~~~g~~a~--~~~~~m~~~---~~~p~~~t~~~L~~~~~~ 461 (464)
+-+++.+.++..+ ..+...... ...+|......|+.+..+
T Consensus 421 ~WNg~~~~~~~~l~~~~~~~l~~~~~~~~~~De~~l~~lL~g~~l 465 (468)
T PF10300_consen 421 FWNGFPRMPKEELEIKSLLELEESKNSEEDPDERALRHLLKGACL 465 (468)
T ss_pred HHhccccCChHHHHHHHHHHHHhcccccCCccHHHHHHHHHHHHh
Confidence 4456666665532 233443332 356888888766666544
No 226
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=96.13 E-value=0.61 Score=38.41 Aligned_cols=167 Identities=14% Similarity=0.101 Sum_probs=84.9
Q ss_pred HHHHHccCChhHHHHHHHHHHhCCCC--CcHhHHHHHHHHHHhcChhhHHHHHHHHHHhccCCCChhhHHHHHHHHHhhc
Q 044770 172 MKIEANDHNIEGLMKVYSDMKRSEVE--PNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLA 249 (464)
Q Consensus 172 ~~~~~~~~~~~~a~~~~~~m~~~~~~--p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 249 (464)
...+...|++++|.+.|+.+...-.. --....-.++.++.+.|+++.|...+++..+.-..-...-+...+.+.+...
T Consensus 12 a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~~~ 91 (203)
T PF13525_consen 12 ALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLSYYK 91 (203)
T ss_dssp HHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHH
Confidence 33455667777777777777654211 1123344556666677777777777777665422211122222222222111
Q ss_pred C-------------hhhHHHHHHHhccCCCCchhhHHHHHHHhhccCChHHHHHHHHHHHhccccCChhhHHHHHHHHHh
Q 044770 250 K-------------GKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCK 316 (464)
Q Consensus 250 ~-------------~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 316 (464)
. ...|... +..++.-|=......+|...+..+.+.- ...--.+..-|.+
T Consensus 92 ~~~~~~~~~~D~~~~~~A~~~--------------~~~li~~yP~S~y~~~A~~~l~~l~~~l----a~~e~~ia~~Y~~ 153 (203)
T PF13525_consen 92 QIPGILRSDRDQTSTRKAIEE--------------FEELIKRYPNSEYAEEAKKRLAELRNRL----AEHELYIARFYYK 153 (203)
T ss_dssp HHHHHH-TT---HHHHHHHHH--------------HHHHHHH-TTSTTHHHHHHHHHHHHHHH----HHHHHHHHHHHHC
T ss_pred hCccchhcccChHHHHHHHHH--------------HHHHHHHCcCchHHHHHHHHHHHHHHHH----HHHHHHHHHHHHH
Confidence 1 1122222 4444555555555566655555544310 0012235667888
Q ss_pred cCChhHHHHHHHHHHhCCCCccH----HHHHHHHHHHHhcCChHHH
Q 044770 317 NGFIDKASGLLKEMSMNGCKPNA----ITYRHLALGCFKSNLVEEG 358 (464)
Q Consensus 317 ~~~~~~a~~~~~~m~~~g~~p~~----~~~~~ll~~~~~~~~~~~a 358 (464)
.|.+..|..-++.+++. -|+. .....++.++.+.|..+.+
T Consensus 154 ~~~y~aA~~r~~~v~~~--yp~t~~~~~al~~l~~~y~~l~~~~~a 197 (203)
T PF13525_consen 154 RGKYKAAIIRFQYVIEN--YPDTPAAEEALARLAEAYYKLGLKQAA 197 (203)
T ss_dssp TT-HHHHHHHHHHHHHH--STTSHHHHHHHHHHHHHHHHTT-HHHH
T ss_pred cccHHHHHHHHHHHHHH--CCCCchHHHHHHHHHHHHHHhCChHHH
Confidence 88899998888888874 2332 3456677778887776644
No 227
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=96.04 E-value=0.082 Score=49.73 Aligned_cols=161 Identities=17% Similarity=0.105 Sum_probs=103.7
Q ss_pred hHHHHHHHHHhhcChHHHHHHhhhcCCCCCc---------hhHHHHHHHHHHh----hCcHHHHHHHHHHHHHcCCCCch
Q 044770 64 DYSYLLEFTIKNHGISQGEKLFCCIPKDYQN---------ELLYNNLVIACLD----KGVIKLSLEYMKKMRVLGHSISY 130 (464)
Q Consensus 64 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~---------~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~~~~~~~ 130 (464)
....++...+=.|+-+.+++.+.+..+. .+ ...|+..+..++. ....+.|.++++.+.+. -|+.
T Consensus 190 ~~~kll~~vGF~gdR~~GL~~L~~~~~~-~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--yP~s 266 (468)
T PF10300_consen 190 KVLKLLSFVGFSGDRELGLRLLWEASKS-ENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--YPNS 266 (468)
T ss_pred HHHHHHhhcCcCCcHHHHHHHHHHHhcc-CCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--CCCc
Confidence 3456777777777777777777765543 11 1235555544443 35677888888888875 4565
Q ss_pred hhHHHH-HHHhcCCCCcccHHHHHHHHHhC--CC-CCChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCcHhHHHHH
Q 044770 131 LVFNRL-IILNSSPGRRKTIPNILRQMKAD--KV-APHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCIL 206 (464)
Q Consensus 131 ~~~~~l-~~~~~~~~~~~~a~~~~~~~~~~--~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l 206 (464)
..|... .+.+...|++++|.+.|+..... .. +.....+--+...+.-.++|++|.+.|..+.+.. .-+..+|..+
T Consensus 267 ~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s-~WSka~Y~Y~ 345 (468)
T PF10300_consen 267 ALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES-KWSKAFYAYL 345 (468)
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc-ccHHHHHHHH
Confidence 555433 45567788888888888876531 10 1223345556777888999999999999998753 2344455544
Q ss_pred HHH-HHhcChh-------hHHHHHHHHHHh
Q 044770 207 ATA-HAVARLY-------TVAETYVEALEK 228 (464)
Q Consensus 207 i~~-~~~~~~~-------~~a~~~~~~~~~ 228 (464)
..+ +...++. ++|.++|.++..
T Consensus 346 ~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 346 AAACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 444 3456666 888888888744
No 228
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.01 E-value=0.75 Score=38.41 Aligned_cols=140 Identities=11% Similarity=0.025 Sum_probs=95.7
Q ss_pred HHHHHHHHHHhcChhhHHHHHHHHHHhccCCCChhhHHHHHHHHHhhcChhhHHHHHHHhcc-CCCCchhhHH-----HH
Q 044770 202 SYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQE-LPNVRSKSYV-----LA 275 (464)
Q Consensus 202 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~-----~l 275 (464)
..+.++.++.-.|.+.-....+.+..+...+.++.....+++.-.+.|+.+.|...++.+.+ ....+...++ ..
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~ 258 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS 258 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence 34455566666777777788888887776667777778888888888888888888887665 2222332232 23
Q ss_pred HHHhhccCChHHHHHHHHHHHhccccCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCccHHHHHH
Q 044770 276 IEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRH 344 (464)
Q Consensus 276 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ 344 (464)
...|.-.+++..|...+.++.... +.|+..-|.-.-+..-.|+...|++.+..|.+. .|.+.+-++
T Consensus 259 a~i~lg~nn~a~a~r~~~~i~~~D-~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~--~P~~~l~es 324 (366)
T KOG2796|consen 259 AFLHLGQNNFAEAHRFFTEILRMD-PRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ--DPRHYLHES 324 (366)
T ss_pred hhheecccchHHHHHHHhhccccC-CCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc--CCccchhhh
Confidence 345666788888888888887743 345666666555666678899999999999884 455544443
No 229
>PRK15331 chaperone protein SicA; Provisional
Probab=95.95 E-value=0.32 Score=37.62 Aligned_cols=85 Identities=11% Similarity=-0.047 Sum_probs=34.5
Q ss_pred hcChhhHHHHHHHHHHhccCCCChhhHHHHHHHHHhhcChhhHHHHHHHhccCCCCchhhHHHHHHHhhccCChHHHHHH
Q 044770 212 VARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEEL 291 (464)
Q Consensus 212 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 291 (464)
..|++++|..+|.-+.-.++ -+..-+..|..++...++++.|...+.........++..+-....+|...|+.+.|+..
T Consensus 49 ~~Gk~~eA~~~F~~L~~~d~-~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~~~A~~~ 127 (165)
T PRK15331 49 NQGRLDEAETFFRFLCIYDF-YNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKAAKARQC 127 (165)
T ss_pred HCCCHHHHHHHHHHHHHhCc-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCHHHHHHH
Confidence 44555555555554433221 12222333333344444444444444433322222222233344444444555555554
Q ss_pred HHHHHh
Q 044770 292 WLEMQS 297 (464)
Q Consensus 292 ~~~~~~ 297 (464)
|+...+
T Consensus 128 f~~a~~ 133 (165)
T PRK15331 128 FELVNE 133 (165)
T ss_pred HHHHHh
Confidence 444443
No 230
>PRK15331 chaperone protein SicA; Provisional
Probab=95.94 E-value=0.22 Score=38.54 Aligned_cols=85 Identities=9% Similarity=0.001 Sum_probs=38.5
Q ss_pred CCCCcccHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCcHhHHHHHHHHHHhcChhhHHHH
Q 044770 142 SPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAET 221 (464)
Q Consensus 142 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~ 221 (464)
..|++++|..+|.-+.-.+ +-+..-|..|..++-..+++++|...|......+. -|+..+-....++...|+.+.|..
T Consensus 49 ~~Gk~~eA~~~F~~L~~~d-~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~-~dp~p~f~agqC~l~l~~~~~A~~ 126 (165)
T PRK15331 49 NQGRLDEAETFFRFLCIYD-FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK-NDYRPVFFTGQCQLLMRKAAKARQ 126 (165)
T ss_pred HCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-CCCCccchHHHHHHHhCCHHHHHH
Confidence 4455555555555554433 22333344444444445555555555544433221 122233334444555555555555
Q ss_pred HHHHHHh
Q 044770 222 YVEALEK 228 (464)
Q Consensus 222 ~~~~~~~ 228 (464)
.|+....
T Consensus 127 ~f~~a~~ 133 (165)
T PRK15331 127 CFELVNE 133 (165)
T ss_pred HHHHHHh
Confidence 5554443
No 231
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=95.84 E-value=0.15 Score=46.29 Aligned_cols=61 Identities=11% Similarity=-0.063 Sum_probs=32.7
Q ss_pred hhHHHHHHHHHhhcChHHHHHHhhhcCCCCCch----hHHHHHHHHHHhhCcHHHHHHHHHHHHH
Q 044770 63 LDYSYLLEFTIKNHGISQGEKLFCCIPKDYQNE----LLYNNLVIACLDKGVIKLSLEYMKKMRV 123 (464)
Q Consensus 63 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~----~~~~~li~~~~~~~~~~~a~~~~~~m~~ 123 (464)
..++.+...|...|++++|...|++.....|+. .+|..+..+|...|+.++|++.+++.++
T Consensus 76 ~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALe 140 (453)
T PLN03098 76 EDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALR 140 (453)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 345555555555555555555555544443332 2355555555555555555555555554
No 232
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=95.84 E-value=1.2 Score=39.19 Aligned_cols=167 Identities=16% Similarity=0.104 Sum_probs=88.2
Q ss_pred HHHHHHHHHhhcChhhHHHHHHHhccCCCCch-----hhHHHHHHHhhccCChHHHHHHHHHHHhcc-----ccCChhhH
Q 044770 238 LDVLIILYGYLAKGKDLERIWATVQELPNVRS-----KSYVLAIEAFGRIAQVSRAEELWLEMQSVK-----QLKATEQY 307 (464)
Q Consensus 238 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-----~~~~~~~~ 307 (464)
|..+.+++-+..+..+++.+-+.-...+.... ....++..++...+.++++++.|+...... .......|
T Consensus 86 ~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvc 165 (518)
T KOG1941|consen 86 YLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVC 165 (518)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehh
Confidence 33344444444444444444443333221111 123345566666677777777777654321 11123457
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHh----CCCCccHH-----HHHHHHHHHHhcCChHHHHHHHHHhHHHHhhhhhcCCC
Q 044770 308 NSVISVYCKNGFIDKASGLLKEMSM----NGCKPNAI-----TYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSST 378 (464)
Q Consensus 308 ~~li~~~~~~~~~~~a~~~~~~m~~----~g~~p~~~-----~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 378 (464)
..+...|.+..++++|.-+.....+ -++.--.. ....+.-++-..|.+..|.+.-+++.++... .|..
T Consensus 166 v~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~---~Gdr 242 (518)
T KOG1941|consen 166 VSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQ---HGDR 242 (518)
T ss_pred hhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHH---hCCh
Confidence 7777777777777777665554432 12211111 1223344566677777777777777665432 3333
Q ss_pred C-cHHHHHHHHHHHHhcCChhhHHHHHHHH
Q 044770 379 P-WLETTLSIIEIFAEKGDVGNAENLFEEL 407 (464)
Q Consensus 379 p-~~~~~~~li~~~~~~g~~~~A~~~~~~m 407 (464)
+ .......+.+.|-..|+.+.|..-|+..
T Consensus 243 a~~arc~~~~aDIyR~~gd~e~af~rYe~A 272 (518)
T KOG1941|consen 243 ALQARCLLCFADIYRSRGDLERAFRRYEQA 272 (518)
T ss_pred HHHHHHHHHHHHHHHhcccHhHHHHHHHHH
Confidence 3 2333456777777777777776666543
No 233
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=95.76 E-value=1.5 Score=39.81 Aligned_cols=147 Identities=13% Similarity=0.039 Sum_probs=105.9
Q ss_pred HhHHHHHHHHHHhcChhhHHHHHHHHHHhcc-CCCChhhHHHHHHHHHhhcChhhHHHHHHHhccCCCCchhhHHHHHHH
Q 044770 200 EVSYCILATAHAVARLYTVAETYVEALEKSM-TGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSKSYVLAIEA 278 (464)
Q Consensus 200 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 278 (464)
...|...++...+..-.+.|..+|-+..+.+ ..+++..+++++..++ .|+...|.++|+.-....+.++.-.+-.+.-
T Consensus 397 t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~f~d~~~y~~kyl~f 475 (660)
T COG5107 397 TFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLKFPDSTLYKEKYLLF 475 (660)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHhCCCchHHHHHHHHH
Confidence 4567777777778888888999999988887 6677888888887664 5778888888887655544444444556667
Q ss_pred hhccCChHHHHHHHHHHHhccccCC--hhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCccHHHHHHHHHHHH
Q 044770 279 FGRIAQVSRAEELWLEMQSVKQLKA--TEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCF 350 (464)
Q Consensus 279 ~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~ 350 (464)
+...++-+.|..+|+....+ +..+ ...|..+|.--..-|+...+..+=++|.+ +.|...+...+..-|.
T Consensus 476 Li~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e--~~pQen~~evF~Sry~ 546 (660)
T COG5107 476 LIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRE--LVPQENLIEVFTSRYA 546 (660)
T ss_pred HHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHH--HcCcHhHHHHHHHHHh
Confidence 77888889999999854431 1112 34788888888888999888888888877 4566655555554444
No 234
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=95.74 E-value=0.15 Score=42.87 Aligned_cols=92 Identities=12% Similarity=0.105 Sum_probs=61.4
Q ss_pred cHHHHHHHHHHHHhc-----CChHHHHHHHHHhHHHHhhhhhcCCCCcHHHHHHHHHHHHhcC----------------C
Q 044770 338 NAITYRHLALGCFKS-----NLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKG----------------D 396 (464)
Q Consensus 338 ~~~~~~~ll~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g----------------~ 396 (464)
|..+|...+..|... +.++=-...+..| .+.|+.-|..+|+.|++.+-+.. +
T Consensus 66 dK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m-------~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~Q 138 (406)
T KOG3941|consen 66 DKDSFLAAVATFKEKSVRGRTHVEFIYTALKYM-------KEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQ 138 (406)
T ss_pred cHHHHHHHHHHHHHhhhcccchHHHHHHHHHHH-------HHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchh
Confidence 444444444444322 3333334445555 66788888888888887765432 2
Q ss_pred hhhHHHHHHHHHHcCCCCcHHHHHHHHHHHHHcCCChhHH
Q 044770 397 VGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKINDPNL 436 (464)
Q Consensus 397 ~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~a~~~ 436 (464)
-+-+..++++|...|+.||-.+-..|+++|.+.+-.-.++
T Consensus 139 Q~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p~~K~ 178 (406)
T KOG3941|consen 139 QNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFPTKKV 178 (406)
T ss_pred hhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccccHHHH
Confidence 2457889999999999999999999999999887654433
No 235
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.58 E-value=0.41 Score=37.11 Aligned_cols=54 Identities=7% Similarity=0.046 Sum_probs=26.6
Q ss_pred cCCCCcccHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhC
Q 044770 141 SSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRS 194 (464)
Q Consensus 141 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 194 (464)
...|.++.+....+-+-..+-+.-...-..|.-+-.+.|++..|.+.|.++...
T Consensus 143 vD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~D 196 (221)
T COG4649 143 VDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAND 196 (221)
T ss_pred hccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHcc
Confidence 345555555555555443332222333344444555566666666666555543
No 236
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=95.56 E-value=0.23 Score=46.15 Aligned_cols=160 Identities=12% Similarity=-0.036 Sum_probs=92.8
Q ss_pred HHHHhhcchHHHHHHHHHHHHcCCCCCCchhHHHHHHHHHhhcChHHHHHHhhhcCCCCCchhHHHHHHHHHHhhCcHHH
Q 044770 34 NRLRKLQLNKRALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQGEKLFCCIPKDYQNELLYNNLVIACLDKGVIKL 113 (464)
Q Consensus 34 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~ 113 (464)
+...-+++++.+.++.+.-.--..+ | ....+.++..+-+.|..+.|+.+-+.-.. -.....+.|+++.
T Consensus 269 k~av~~~d~~~v~~~i~~~~ll~~i-~-~~~~~~i~~fL~~~G~~e~AL~~~~D~~~----------rFeLAl~lg~L~~ 336 (443)
T PF04053_consen 269 KTAVLRGDFEEVLRMIAASNLLPNI-P-KDQGQSIARFLEKKGYPELALQFVTDPDH----------RFELALQLGNLDI 336 (443)
T ss_dssp HHHHHTT-HHH-----HHHHTGGG----HHHHHHHHHHHHHTT-HHHHHHHSS-HHH----------HHHHHHHCT-HHH
T ss_pred HHHHHcCChhhhhhhhhhhhhcccC-C-hhHHHHHHHHHHHCCCHHHHHhhcCChHH----------HhHHHHhcCCHHH
Confidence 4444567788877766522110112 2 44577788888888888888877554321 2334456777777
Q ss_pred HHHHHHHHHHcCCCCchhhHHHHHHHhcCCCCcccHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHh
Q 044770 114 SLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKR 193 (464)
Q Consensus 114 a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 193 (464)
|.++.++ .++...|..|.....+.|+++-|++.|.+..+ |..|+-.|.-.|+.+.-.++.+....
T Consensus 337 A~~~a~~------~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~ 401 (443)
T PF04053_consen 337 ALEIAKE------LDDPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEE 401 (443)
T ss_dssp HHHHCCC------CSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHh------cCcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHH
Confidence 7766422 23566788888888888888888888877653 45666677777887777777776666
Q ss_pred CCCCCcHhHHHHHHHHHHhcChhhHHHHHHHHH
Q 044770 194 SEVEPNEVSYCILATAHAVARLYTVAETYVEAL 226 (464)
Q Consensus 194 ~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~ 226 (464)
+|- ++....++.-.|+.++..+++.+.
T Consensus 402 ~~~------~n~af~~~~~lgd~~~cv~lL~~~ 428 (443)
T PF04053_consen 402 RGD------INIAFQAALLLGDVEECVDLLIET 428 (443)
T ss_dssp TT-------HHHHHHHHHHHT-HHHHHHHHHHT
T ss_pred ccC------HHHHHHHHHHcCCHHHHHHHHHHc
Confidence 552 344455555667777777666543
No 237
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=95.41 E-value=0.53 Score=43.81 Aligned_cols=158 Identities=15% Similarity=0.070 Sum_probs=94.8
Q ss_pred HHHHccCChhHHHHHHH--HHHhCCCCCcHhHHHHHHHHHHhcChhhHHHHHHHHHHhccCCCChhhHHHHHHHHHhhcC
Q 044770 173 KIEANDHNIEGLMKVYS--DMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAK 250 (464)
Q Consensus 173 ~~~~~~~~~~~a~~~~~--~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 250 (464)
....-.++++++.+..+ ++.. .+ +..-.+.++.-+-+.|.++.|+.+...-. .-.....+.|+
T Consensus 269 k~av~~~d~~~v~~~i~~~~ll~-~i--~~~~~~~i~~fL~~~G~~e~AL~~~~D~~------------~rFeLAl~lg~ 333 (443)
T PF04053_consen 269 KTAVLRGDFEEVLRMIAASNLLP-NI--PKDQGQSIARFLEKKGYPELALQFVTDPD------------HRFELALQLGN 333 (443)
T ss_dssp HHHHHTT-HHH-----HHHHTGG-G----HHHHHHHHHHHHHTT-HHHHHHHSS-HH------------HHHHHHHHCT-
T ss_pred HHHHHcCChhhhhhhhhhhhhcc-cC--ChhHHHHHHHHHHHCCCHHHHHhhcCChH------------HHhHHHHhcCC
Confidence 33445677777666664 1111 11 23446667777777888888877643321 12334556777
Q ss_pred hhhHHHHHHHhccCCCCchhhHHHHHHHhhccCChHHHHHHHHHHHhccccCChhhHHHHHHHHHhcCChhHHHHHHHHH
Q 044770 251 GKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEM 330 (464)
Q Consensus 251 ~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m 330 (464)
.+.|.++.+... +...|..|.+...+.|+++-|++.|.+..+ |..++-.|.-.|+.+.-.++.+..
T Consensus 334 L~~A~~~a~~~~-----~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a 399 (443)
T PF04053_consen 334 LDIALEIAKELD-----DPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIA 399 (443)
T ss_dssp HHHHHHHCCCCS-----THHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-----cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHH
Confidence 777766544332 445688888888888999988888887765 677777788888887777777776
Q ss_pred HhCCCCccHHHHHHHHHHHHhcCChHHHHHHHHHh
Q 044770 331 SMNGCKPNAITYRHLALGCFKSNLVEEGFKALELG 365 (464)
Q Consensus 331 ~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 365 (464)
...|- ++....++.-.|+.++..+++...
T Consensus 400 ~~~~~------~n~af~~~~~lgd~~~cv~lL~~~ 428 (443)
T PF04053_consen 400 EERGD------INIAFQAALLLGDVEECVDLLIET 428 (443)
T ss_dssp HHTT-------HHHHHHHHHHHT-HHHHHHHHHHT
T ss_pred HHccC------HHHHHHHHHHcCCHHHHHHHHHHc
Confidence 66542 445555666678888887777655
No 238
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=95.28 E-value=2.2 Score=38.73 Aligned_cols=141 Identities=14% Similarity=0.116 Sum_probs=98.2
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHhCC-CCccHHHHHHHHHHHHhcCChHHHHHHHHHhHHHHhhhhhcCCCCcHHH
Q 044770 305 EQYNSVISVYCKNGFIDKASGLLKEMSMNG-CKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLET 383 (464)
Q Consensus 305 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~p~~~~ 383 (464)
..|...+..-.+..-.+.|..+|-+..+.| +.++...++.++..++ .|+...|..+|+.-+ ..-||...
T Consensus 398 ~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl---------~~f~d~~~ 467 (660)
T COG5107 398 FVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGL---------LKFPDSTL 467 (660)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHH---------HhCCCchH
Confidence 456667777777778899999999999988 6678888888887654 578889999998764 22333333
Q ss_pred -HHHHHHHHHhcCChhhHHHHHHHHHHcCCCCc--HHHHHHHHHHHHHcCCC--hhHHHHHHHhCCCCCCHHHHHHHHHH
Q 044770 384 -TLSIIEIFAEKGDVGNAENLFEELKKANYTKY--TFVYNTLIKAYVKAKIN--DPNLLRRMILGGARPDAETYSLLKLA 458 (464)
Q Consensus 384 -~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~--~~~~~~li~~~~~~g~~--a~~~~~~m~~~~~~p~~~t~~~L~~~ 458 (464)
-+-.+..+.+.++-+.|..+|+....+ +..+ ...|..+|.-=..-|+- +..+=++|.. +-|-..+..++..-
T Consensus 468 y~~kyl~fLi~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e--~~pQen~~evF~Sr 544 (660)
T COG5107 468 YKEKYLLFLIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRE--LVPQENLIEVFTSR 544 (660)
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHH--HcCcHhHHHHHHHH
Confidence 245667778889999999999955432 1122 45899999888888874 5555556654 34555555444433
No 239
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.24 E-value=1.5 Score=36.39 Aligned_cols=25 Identities=8% Similarity=-0.027 Sum_probs=12.7
Q ss_pred hHHHHHHHHhhcchHHHHHHHHHHH
Q 044770 29 IFHSINRLRKLQLNKRALEVMEWVI 53 (464)
Q Consensus 29 ~~~~l~~~~~~~~~~~A~~~~~~~~ 53 (464)
|.....+|....++++|...+....
T Consensus 34 yekAAvafRnAk~feKakdcLlkA~ 58 (308)
T KOG1585|consen 34 YEKAAVAFRNAKKFEKAKDCLLKAS 58 (308)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHH
Confidence 4444445555555555555554444
No 240
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=95.18 E-value=0.35 Score=36.45 Aligned_cols=85 Identities=9% Similarity=-0.003 Sum_probs=57.7
Q ss_pred ChhchHHHHHHHHhhcchHHHHHHHHHHHHcCCCCC-CchhHHHHHHHHHhhcChHHHHHHhhhcCCCCCc--hhHHHHH
Q 044770 25 HRGEIFHSINRLRKLQLNKRALEVMEWVIRERPYRP-KELDYSYLLEFTIKNHGISQGEKLFCCIPKDYQN--ELLYNNL 101 (464)
Q Consensus 25 ~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~l 101 (464)
++..+..-.....+.|++++|.+.|+.+..+.+..+ .....-.++.+|.+.+++++|...+++..+..|+ ...|-..
T Consensus 9 ~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y 88 (142)
T PF13512_consen 9 SPQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYY 88 (142)
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHH
Confidence 444555666677788899999999998887665543 2344556777888888888888888887766443 2445555
Q ss_pred HHHHHhhC
Q 044770 102 VIACLDKG 109 (464)
Q Consensus 102 i~~~~~~~ 109 (464)
+.+++.-.
T Consensus 89 ~~gL~~~~ 96 (142)
T PF13512_consen 89 MRGLSYYE 96 (142)
T ss_pred HHHHHHHH
Confidence 55554433
No 241
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.14 E-value=3.4 Score=40.12 Aligned_cols=271 Identities=12% Similarity=0.071 Sum_probs=148.8
Q ss_pred CchhHHHHHHHHHhhcChHHHHHHhhhcCCCCC------chhHHHHHHHHHHhhCcHHHHHHHHHHHHHcCCCCchhhHH
Q 044770 61 KELDYSYLLEFTIKNHGISQGEKLFCCIPKDYQ------NELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFN 134 (464)
Q Consensus 61 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~ 134 (464)
...+|.....-...+|+++-|..+++.=+.... +..-+...+.-+.+.|+.+....++-.+...- +...|.
T Consensus 506 ~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~---~~s~l~ 582 (829)
T KOG2280|consen 506 PGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKL---NRSSLF 582 (829)
T ss_pred CceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHH---HHHHHH
Confidence 445788888888889999999999887665411 33456677888889999999988888777641 222232
Q ss_pred HHHHHhcCCCCcccHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhHHHHH-HHHHHhC-CCCCcHhHHHHHHHHHHh
Q 044770 135 RLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKV-YSDMKRS-EVEPNEVSYCILATAHAV 212 (464)
Q Consensus 135 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~-~~~m~~~-~~~p~~~~~~~li~~~~~ 212 (464)
..+ .+...|..+|.+..+.. |.. .+-+.|-...+...+-.+ ++..... -+.+-........+.+.+
T Consensus 583 ~~l------~~~p~a~~lY~~~~r~~---~~~---~l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~lk~~a~~~a~ 650 (829)
T KOG2280|consen 583 MTL------RNQPLALSLYRQFMRHQ---DRA---TLYDFYNQDDNHQALASFHLQASYAAETIEGRIPALKTAANAFAK 650 (829)
T ss_pred HHH------HhchhhhHHHHHHHHhh---chh---hhhhhhhcccchhhhhhhhhhhhhhhhhhcccchhHHHHHHHHhh
Confidence 222 23456666666665421 111 111222222222221111 1110000 011222222333344444
Q ss_pred cChhh----------HHHHHHHHHHh-ccCCCChhhHHHHHHHHHhhcChhhHHHHHHHhccCCCCchhhHHHHHHHhhc
Q 044770 213 ARLYT----------VAETYVEALEK-SMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGR 281 (464)
Q Consensus 213 ~~~~~----------~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 281 (464)
..... +-+++.+.+.. .|..-...+.+--+.-+...|+..+|.++-...+- ++...|-.-+.+++.
T Consensus 651 sk~~s~e~ka~ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fki---pdKr~~wLk~~aLa~ 727 (829)
T KOG2280|consen 651 SKEKSFEAKALEDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFKI---PDKRLWWLKLTALAD 727 (829)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcCC---cchhhHHHHHHHHHh
Confidence 33311 11222222221 12233344555556666777777777777665532 333445566777788
Q ss_pred cCChHHHHHHHHHHHhccccCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCccHHHHHHHHHHHHhcCChHHHHHH
Q 044770 282 IAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKA 361 (464)
Q Consensus 282 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~ 361 (464)
.+++++-+++-+... ++..|.-.+.+|.+.|+.++|..++.+... .. -...+|.+.|++.+|.+.
T Consensus 728 ~~kweeLekfAkskk------sPIGy~PFVe~c~~~~n~~EA~KYiprv~~-----l~----ekv~ay~~~~~~~eAad~ 792 (829)
T KOG2280|consen 728 IKKWEELEKFAKSKK------SPIGYLPFVEACLKQGNKDEAKKYIPRVGG-----LQ----EKVKAYLRVGDVKEAADL 792 (829)
T ss_pred hhhHHHHHHHHhccC------CCCCchhHHHHHHhcccHHHHhhhhhccCC-----hH----HHHHHHHHhccHHHHHHH
Confidence 888777665544333 244677788888888888888888876443 22 345567777777777665
Q ss_pred HHH
Q 044770 362 LEL 364 (464)
Q Consensus 362 ~~~ 364 (464)
--+
T Consensus 793 A~~ 795 (829)
T KOG2280|consen 793 AAE 795 (829)
T ss_pred HHH
Confidence 443
No 242
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=95.13 E-value=3 Score=42.83 Aligned_cols=55 Identities=11% Similarity=-0.022 Sum_probs=24.0
Q ss_pred HHHHHhhcChhhHHHHHHHhccCCCCchhhHHHHHHHhhccCChHHHHHHHHHHH
Q 044770 242 IILYGYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQ 296 (464)
Q Consensus 242 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 296 (464)
+.+|...|+|.++..+..++......-..+-..|+.-+...+++-+|-++..+..
T Consensus 972 l~a~~~~~dWr~~l~~a~ql~~~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~ 1026 (1265)
T KOG1920|consen 972 LKAYKECGDWREALSLAAQLSEGKDELVILAEELVSRLVEQRKHYEAAKILLEYL 1026 (1265)
T ss_pred HHHHHHhccHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHh
Confidence 3344445555555554444433222222222344444445555555555544443
No 243
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=95.09 E-value=0.49 Score=34.77 Aligned_cols=94 Identities=16% Similarity=0.108 Sum_probs=58.2
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCCccHHHHHHHHHHHHhcCChHHHHHHHHHhHHHHhhhhhcCCCCcHHHHHHHHHHHH
Q 044770 313 VYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFA 392 (464)
Q Consensus 313 ~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~ 392 (464)
+++..|+.+.|++.|.+.+.. .+-....||.-.+++.-.|+.++|++-+++++++.. ..-+.-...|..-...|-
T Consensus 52 alaE~g~Ld~AlE~F~qal~l-~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag----~~trtacqa~vQRg~lyR 126 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCL-APERASAYNNRAQALRLQGDDEEALDDLNKALELAG----DQTRTACQAFVQRGLLYR 126 (175)
T ss_pred HHHhccchHHHHHHHHHHHHh-cccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcC----ccchHHHHHHHHHHHHHH
Confidence 456677777777777777663 122566777777777777777777777777764321 111111122334444566
Q ss_pred hcCChhhHHHHHHHHHHcC
Q 044770 393 EKGDVGNAENLFEELKKAN 411 (464)
Q Consensus 393 ~~g~~~~A~~~~~~m~~~~ 411 (464)
..|+-+.|..=|+...+.|
T Consensus 127 l~g~dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 127 LLGNDDAARADFEAAAQLG 145 (175)
T ss_pred HhCchHHHHHhHHHHHHhC
Confidence 6778888877777776655
No 244
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=94.97 E-value=3.7 Score=39.61 Aligned_cols=187 Identities=6% Similarity=-0.120 Sum_probs=94.3
Q ss_pred CccChhchHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCCchhHH------HHHHHHHhhcChHHHHHHhhhcCCCCCch
Q 044770 22 FPVHRGEIFHSINRLRKLQLNKRALEVMEWVIRERPYRPKELDYS------YLLEFTIKNHGISQGEKLFCCIPKDYQNE 95 (464)
Q Consensus 22 ~~~~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~------~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 95 (464)
-.|++..+.-+.......-.++.|...|-....-.|++.-...-. .-...-+--|++++|.+++-++..+ |
T Consensus 688 dnPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~~~g~feeaek~yld~drr--D- 764 (1189)
T KOG2041|consen 688 DNPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISAFYGEFEEAEKLYLDADRR--D- 764 (1189)
T ss_pred cCCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhhhhcchhHhhhhhhccchh--h-
Confidence 457888888888887787888888888877655334321111000 0111222347888888888877653 2
Q ss_pred hHHHHHHHHHHhhCcHHHHHHHHHHHHHc-CCCCchhhHHHHHHHhcCCCCcccHHHHHHHHHh----------------
Q 044770 96 LLYNNLVIACLDKGVIKLSLEYMKKMRVL-GHSISYLVFNRLIILNSSPGRRKTIPNILRQMKA---------------- 158 (464)
Q Consensus 96 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---------------- 158 (464)
..|..+.+.|++-...++++.--.. .-..-...|+.+...++....|++|.+.|..-..
T Consensus 765 ----LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~e~~~ecly~le~f~~ 840 (1189)
T KOG2041|consen 765 ----LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDTENQIECLYRLELFGE 840 (1189)
T ss_pred ----hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHhHHHHHHHHHhhhh
Confidence 2344555566666555554321100 0000123455555555554455555544443211
Q ss_pred -----CCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCcHhHHHHHHHHHHhcChhhHHHHHHH
Q 044770 159 -----DKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVE 224 (464)
Q Consensus 159 -----~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~ 224 (464)
..++.+....-.+.+++...|--++|.+.|-+-. .|- ..+..|...++|.+|.++-+
T Consensus 841 LE~la~~Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr~s----~pk-----aAv~tCv~LnQW~~avelaq 902 (1189)
T KOG2041|consen 841 LEVLARTLPEDSELLPVMADMFTSVGMCDQAVEAYLRRS----LPK-----AAVHTCVELNQWGEAVELAQ 902 (1189)
T ss_pred HHHHHHhcCcccchHHHHHHHHHhhchHHHHHHHHHhcc----CcH-----HHHHHHHHHHHHHHHHHHHH
Confidence 1234444444555555555555555555443322 111 22344555555555555444
No 245
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.92 E-value=0.51 Score=39.75 Aligned_cols=98 Identities=14% Similarity=0.130 Sum_probs=69.7
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCCC--ccHHHHHHHHHHHHhcCChHHHHHHHHHhHHHHhhhhhcCCCCc-HH
Q 044770 306 QYNSVISVYCKNGFIDKASGLLKEMSMNGCK--PNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPW-LE 382 (464)
Q Consensus 306 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~--p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~p~-~~ 382 (464)
.|+.-+. +.+.|++..|...|...++.... -....+-.|..++...|++++|..+|..+.+ ..+-.|. ..
T Consensus 144 ~Y~~A~~-~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k------~~P~s~KApd 216 (262)
T COG1729 144 LYNAALD-LYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVK------DYPKSPKAPD 216 (262)
T ss_pred HHHHHHH-HHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHH------hCCCCCCChH
Confidence 4665554 44567788899888888875321 1223456788888899999999999988863 2333332 34
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHHHc
Q 044770 383 TTLSIIEIFAEKGDVGNAENLFEELKKA 410 (464)
Q Consensus 383 ~~~~li~~~~~~g~~~~A~~~~~~m~~~ 410 (464)
.+--|.....+.|+.++|..+|++..+.
T Consensus 217 allKlg~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 217 ALLKLGVSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 5557888888899999999999988875
No 246
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=94.85 E-value=1.3 Score=33.82 Aligned_cols=43 Identities=12% Similarity=0.026 Sum_probs=23.5
Q ss_pred HHHHHHHccCChhHHHHHHHHHHhCCCCCcHhHHHHHHHHHHhc
Q 044770 170 ILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVA 213 (464)
Q Consensus 170 ~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 213 (464)
.++..+...+.+.....+++.+...+. .+...++.++..|++.
T Consensus 12 ~vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~~ 54 (140)
T smart00299 12 EVVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAKY 54 (140)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHHH
Confidence 455555555556666666666555542 3445555555555543
No 247
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=94.80 E-value=1.4 Score=33.73 Aligned_cols=41 Identities=10% Similarity=0.020 Sum_probs=18.9
Q ss_pred HHHHhcCCCCcccHHHHHHHHHhCCCCCChhhHHHHHHHHHc
Q 044770 136 LIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEAN 177 (464)
Q Consensus 136 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 177 (464)
++..+...+.......+++.+...+ ..+...++.++..|++
T Consensus 13 vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~ 53 (140)
T smart00299 13 VVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAK 53 (140)
T ss_pred HHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHH
Confidence 4444444444445555555544443 2344444455555543
No 248
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=94.73 E-value=2.1 Score=35.69 Aligned_cols=94 Identities=14% Similarity=0.058 Sum_probs=39.3
Q ss_pred hHHHHHHHhcCCCCcccHHHHHHHHHhC-CCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCcHhHHHHHHH-H
Q 044770 132 VFNRLIILNSSPGRRKTIPNILRQMKAD-KVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILAT-A 209 (464)
Q Consensus 132 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~-~ 209 (464)
.+......+...+++..+...+...... ........+......+...+++..+.+.+.........+ ......... .
T Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 139 (291)
T COG0457 61 LLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDP-DLAEALLALGA 139 (291)
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCc-chHHHHHHHHH
Confidence 3333344444444444444444444321 112333334444444444445555555555554432221 111111111 4
Q ss_pred HHhcChhhHHHHHHHHH
Q 044770 210 HAVARLYTVAETYVEAL 226 (464)
Q Consensus 210 ~~~~~~~~~a~~~~~~~ 226 (464)
+...|+++.+...+.+.
T Consensus 140 ~~~~~~~~~a~~~~~~~ 156 (291)
T COG0457 140 LYELGDYEEALELYEKA 156 (291)
T ss_pred HHHcCCHHHHHHHHHHH
Confidence 45555555555555555
No 249
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.65 E-value=0.48 Score=39.89 Aligned_cols=24 Identities=13% Similarity=0.098 Sum_probs=10.5
Q ss_pred HHHHHhhccCChHHHHHHHHHHHh
Q 044770 274 LAIEAFGRIAQVSRAEELWLEMQS 297 (464)
Q Consensus 274 ~l~~~~~~~g~~~~a~~~~~~~~~ 297 (464)
-|.....+.|+.++|..+|+++.+
T Consensus 220 Klg~~~~~l~~~d~A~atl~qv~k 243 (262)
T COG1729 220 KLGVSLGRLGNTDEACATLQQVIK 243 (262)
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHH
Confidence 333444444444444444444443
No 250
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=94.63 E-value=0.37 Score=35.39 Aligned_cols=90 Identities=14% Similarity=0.001 Sum_probs=57.1
Q ss_pred HHHhhcChHHHHHHhhhcCCC-CCchhHHHHHHHHHHhhCcHHHHHHHHHHHHHcCCCCch---hhHHHHHHHhcCCCCc
Q 044770 71 FTIKNHGISQGEKLFCCIPKD-YQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISY---LVFNRLIILNSSPGRR 146 (464)
Q Consensus 71 ~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~---~~~~~l~~~~~~~~~~ 146 (464)
+++..|+++.|++.|.+.... +.+...||.-..++.-.|+.++|++-+++..+..-..+. ..|..-...|...|+-
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~d 131 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGND 131 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCch
Confidence 456677777777777776555 335677777777777777777777777777663211121 2233333446666777
Q ss_pred ccHHHHHHHHHhCC
Q 044770 147 KTIPNILRQMKADK 160 (464)
Q Consensus 147 ~~a~~~~~~~~~~~ 160 (464)
+.|..-|+...+.|
T Consensus 132 d~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 132 DAARADFEAAAQLG 145 (175)
T ss_pred HHHHHhHHHHHHhC
Confidence 77777777666555
No 251
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=94.55 E-value=0.32 Score=43.23 Aligned_cols=94 Identities=9% Similarity=-0.057 Sum_probs=48.5
Q ss_pred hHHHHHHHhcCCCCcccHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCcHhHH-HHHHHHH
Q 044770 132 VFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSY-CILATAH 210 (464)
Q Consensus 132 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~-~~li~~~ 210 (464)
++..+.-++.+.+++..|+..-+..+..+ ++|+-..---..++...|+++.|...|+++.+. .|+...- +.++.+-
T Consensus 259 ~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~--~P~Nka~~~el~~l~ 335 (397)
T KOG0543|consen 259 CHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKALYRRGQALLALGEYDLARDDFQKALKL--EPSNKAARAELIKLK 335 (397)
T ss_pred HhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhHHHHHHHHHHhhccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHH
Confidence 34445555555566666666555555544 445444444555666666666666666666654 4443333 3333333
Q ss_pred HhcChh-hHHHHHHHHHHh
Q 044770 211 AVARLY-TVAETYVEALEK 228 (464)
Q Consensus 211 ~~~~~~-~~a~~~~~~~~~ 228 (464)
.+.... +...++|..|..
T Consensus 336 ~k~~~~~~kekk~y~~mF~ 354 (397)
T KOG0543|consen 336 QKIREYEEKEKKMYANMFA 354 (397)
T ss_pred HHHHHHHHHHHHHHHHHhh
Confidence 333333 233556666644
No 252
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.31 E-value=1.1 Score=38.82 Aligned_cols=151 Identities=7% Similarity=-0.144 Sum_probs=98.1
Q ss_pred hhCcHHHHHHHHHHHHHcCCCCchhhHHHHHHHhcCCCCcccHHHHHHHHHhCCCCCChhh----HHHHHHHHHccCChh
Q 044770 107 DKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVST----FHILMKIEANDHNIE 182 (464)
Q Consensus 107 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~----~~~l~~~~~~~~~~~ 182 (464)
..|++.+|-..++++++. .+.|...+...=++|.-.|+.+.-...++.+...- .+|... -..+.-++..+|-++
T Consensus 115 ~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~w-n~dlp~~sYv~GmyaFgL~E~g~y~ 192 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKW-NADLPCYSYVHGMYAFGLEECGIYD 192 (491)
T ss_pred ccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhcccc-CCCCcHHHHHHHHHHhhHHHhccch
Confidence 457777777888888875 56777788877788888888888888888876531 344433 334445566788899
Q ss_pred HHHHHHHHHHhCCCCCcHhHHHHHHHHHHhcChhhHHHHHHHHHHhc---cCCCChhhHHHHHHHHHhhcChhhHHHHHH
Q 044770 183 GLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKS---MTGNNWSTLDVLIILYGYLAKGKDLERIWA 259 (464)
Q Consensus 183 ~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 259 (464)
+|++.-++..+-+ +.|...-.+....+-..++..++.++..+-... +.-.-..-|-...-.+...+.++.|+.+|+
T Consensus 193 dAEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD 271 (491)
T KOG2610|consen 193 DAEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYD 271 (491)
T ss_pred hHHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHH
Confidence 9988888877654 335666666777777788888888776653221 100011112222233445577888887776
Q ss_pred H
Q 044770 260 T 260 (464)
Q Consensus 260 ~ 260 (464)
.
T Consensus 272 ~ 272 (491)
T KOG2610|consen 272 R 272 (491)
T ss_pred H
Confidence 4
No 253
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=94.30 E-value=2.8 Score=35.19 Aligned_cols=50 Identities=18% Similarity=0.252 Sum_probs=23.6
Q ss_pred hhcChHHHHHHhhhcCCCCC----chhHHHHHHHHHHhhCcHHHHHHHHHHHHH
Q 044770 74 KNHGISQGEKLFCCIPKDYQ----NELLYNNLVIACLDKGVIKLSLEYMKKMRV 123 (464)
Q Consensus 74 ~~g~~~~a~~~~~~~~~~~~----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 123 (464)
..|++++|.+.|+.+....| ...+--.++.++-+.++++.|+..+++..+
T Consensus 46 ~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~ 99 (254)
T COG4105 46 QKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIR 99 (254)
T ss_pred hcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 44555555555555544422 122333344444555555555555555554
No 254
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=94.27 E-value=1.8 Score=33.48 Aligned_cols=72 Identities=13% Similarity=0.050 Sum_probs=36.1
Q ss_pred HHHHHHhhcchHHHHHHHHHHHHcCCCCCCchhHHHHHHHHHhhcChHHHHHHhhhcCCCCCchhHHHHHHHHH
Q 044770 32 SINRLRKLQLNKRALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQGEKLFCCIPKDYQNELLYNNLVIAC 105 (464)
Q Consensus 32 ~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~li~~~ 105 (464)
++..-.+.++.+++..+++-+..-.+-.|...++.. ..+...|++.+|..+|+.+....|....-..|+..|
T Consensus 16 ~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~--~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~C 87 (160)
T PF09613_consen 16 VLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDG--WLHIVRGDWDDALRLLRELEERAPGFPYAKALLALC 87 (160)
T ss_pred HHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHH--HHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHH
Confidence 333444556666777776666553222222222222 234566667777777776655544333333444333
No 255
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=94.27 E-value=1.6 Score=32.30 Aligned_cols=60 Identities=20% Similarity=0.294 Sum_probs=26.1
Q ss_pred HHHHhhccCChHHHHHHHHHHHhccccCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 044770 275 AIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGC 335 (464)
Q Consensus 275 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~ 335 (464)
.++.+...|+-+.-.+++..+.+ +-.+++...-.+..+|.+.|+..++-+++.+.-+.|+
T Consensus 92 ALd~lv~~~kkDqLdki~~~l~k-n~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 92 ALDILVKQGKKDQLDKIYNELKK-NEEINPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp HHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred HHHHHHHhccHHHHHHHHHHHhh-ccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 34444455555555555555443 2234444445555555555555555555555555443
No 256
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.20 E-value=2.1 Score=37.34 Aligned_cols=115 Identities=10% Similarity=-0.055 Sum_probs=50.7
Q ss_pred cChhhHHHHHHHHHHhccCCCChhhHHHHHHHHHhhcChhhHHHHHHHhccC--CCCchhhHH--HHHHHhhccCChHHH
Q 044770 213 ARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQEL--PNVRSKSYV--LAIEAFGRIAQVSRA 288 (464)
Q Consensus 213 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~--~l~~~~~~~g~~~~a 288 (464)
.|+..+|-..++++++. .+.|...+...-.+|...|+.+.....++.+... +.....+|. .+.-++..+|-+++|
T Consensus 116 ~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~dA 194 (491)
T KOG2610|consen 116 RGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYDDA 194 (491)
T ss_pred cccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccchhH
Confidence 34455555555555544 4445455555555555555555555555544432 111111121 122223345555555
Q ss_pred HHHHHHHHhccccCChhhHHHHHHHHHhcCChhHHHHHHHH
Q 044770 289 EELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKE 329 (464)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 329 (464)
++.-++..+.+ +.|...-.+....+-..|+..++.++..+
T Consensus 195 Ek~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ 234 (491)
T KOG2610|consen 195 EKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYK 234 (491)
T ss_pred HHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHh
Confidence 55555444422 12333333344444444555555554443
No 257
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=94.18 E-value=0.47 Score=37.95 Aligned_cols=97 Identities=14% Similarity=0.047 Sum_probs=58.3
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCccH--HHHHHHHHHHHhcCChHHHHHHHHHhHHHHhhhhhcCCCCcH--
Q 044770 306 QYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNA--ITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWL-- 381 (464)
Q Consensus 306 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~p~~-- 381 (464)
.+..+..-|++.|+.+.|++.|.++.+....|.. ..+-.+|+.....+++..+.....++..... .+..++.
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~----~~~d~~~~n 113 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIE----KGGDWERRN 113 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHh----ccchHHHHH
Confidence 5666777777777777888777777776544443 3455667777777788777777777743321 1222222
Q ss_pred --HHHHHHHHHHHhcCChhhHHHHHHHHH
Q 044770 382 --ETTLSIIEIFAEKGDVGNAENLFEELK 408 (464)
Q Consensus 382 --~~~~~li~~~~~~g~~~~A~~~~~~m~ 408 (464)
..|..|. +...|++.+|-+.|-+..
T Consensus 114 rlk~~~gL~--~l~~r~f~~AA~~fl~~~ 140 (177)
T PF10602_consen 114 RLKVYEGLA--NLAQRDFKEAAELFLDSL 140 (177)
T ss_pred HHHHHHHHH--HHHhchHHHHHHHHHccC
Confidence 2222222 234677888777765544
No 258
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=94.17 E-value=0.99 Score=40.31 Aligned_cols=69 Identities=10% Similarity=0.013 Sum_probs=35.1
Q ss_pred HHHHHHHhhccCChHHHHHHHHHHHhccccCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCccHHHHH
Q 044770 272 YVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYR 343 (464)
Q Consensus 272 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~ 343 (464)
+..+..+|.+.+++..|++.-...... .++|+...-.=..+|...|+++.|+..|+.+++ +.|+.....
T Consensus 260 ~lNlA~c~lKl~~~~~Ai~~c~kvLe~-~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k--~~P~Nka~~ 328 (397)
T KOG0543|consen 260 HLNLAACYLKLKEYKEAIESCNKVLEL-DPNNVKALYRRGQALLALGEYDLARDDFQKALK--LEPSNKAAR 328 (397)
T ss_pred hhHHHHHHHhhhhHHHHHHHHHHHHhc-CCCchhHHHHHHHHHHhhccHHHHHHHHHHHHH--hCCCcHHHH
Confidence 444455555555555555555555542 223444444445555555555555555555555 444444333
No 259
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=94.17 E-value=3.6 Score=35.92 Aligned_cols=164 Identities=15% Similarity=0.069 Sum_probs=84.0
Q ss_pred hHHHHHHHHHHhcChhh---HHHHHHHHHHhccCCCChhhHHHHHHHHHhhcChhhHHHHHHHhccCCCCchhhHHHHHH
Q 044770 201 VSYCILATAHAVARLYT---VAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSKSYVLAIE 277 (464)
Q Consensus 201 ~~~~~li~~~~~~~~~~---~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 277 (464)
.++..++.+|...+..+ +|..+++.+... .+-.+.++..-+..+.+.++.+.+.+.+..|..........+..++.
T Consensus 85 ~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e-~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~~e~~~~~~l~ 163 (278)
T PF08631_consen 85 SILRLLANAYLEWDTYESVEKALNALRLLESE-YGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVDHSESNFDSILH 163 (278)
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHh-CCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcccccchHHHHHH
Confidence 34555666666665543 455555555433 22234445455666666777777777777777765544444555555
Q ss_pred Hhhc--cCChHHHHHHHHHHHhccccCChhhH-HH-HHHH---HHhcCC------hhHHHHHHHHHHh-CCCCccHHHHH
Q 044770 278 AFGR--IAQVSRAEELWLEMQSVKQLKATEQY-NS-VISV---YCKNGF------IDKASGLLKEMSM-NGCKPNAITYR 343 (464)
Q Consensus 278 ~~~~--~g~~~~a~~~~~~~~~~~~~~~~~~~-~~-li~~---~~~~~~------~~~a~~~~~~m~~-~g~~p~~~~~~ 343 (464)
.+.. ......|...+..+......|....| .. ++.. ..+.++ .+...+++....+ .+.+.+..+-.
T Consensus 164 ~i~~l~~~~~~~a~~~ld~~l~~r~~~~~~~~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~~~ls~~~~~ 243 (278)
T PF08631_consen 164 HIKQLAEKSPELAAFCLDYLLLNRFKSSEDQWLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVEHSLGKQLSAEAAS 243 (278)
T ss_pred HHHHHHhhCcHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHHHhcCCCCHHHHH
Confidence 4422 22334555666555544444444311 11 1111 111111 3344444543332 22233333322
Q ss_pred ---HH----HHHHHhcCChHHHHHHHHHh
Q 044770 344 ---HL----ALGCFKSNLVEEGFKALELG 365 (464)
Q Consensus 344 ---~l----l~~~~~~~~~~~a~~~~~~~ 365 (464)
++ ...+.+.+++++|.+.|+..
T Consensus 244 a~~~LLW~~~~~~~~~k~y~~A~~w~~~a 272 (278)
T PF08631_consen 244 AIHTLLWNKGKKHYKAKNYDEAIEWYELA 272 (278)
T ss_pred HHHHHHHHHHHHHHhhcCHHHHHHHHHHH
Confidence 22 23466789999999999876
No 260
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=94.06 E-value=3.7 Score=38.00 Aligned_cols=26 Identities=15% Similarity=0.241 Sum_probs=12.9
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHH
Q 044770 383 TTLSIIEIFAEKGDVGNAENLFEELK 408 (464)
Q Consensus 383 ~~~~li~~~~~~g~~~~A~~~~~~m~ 408 (464)
+...|+.++...+.+.++..++.+..
T Consensus 297 IrenLie~LLelq~Yad~q~lL~kYd 322 (539)
T PF04184_consen 297 IRENLIEALLELQAYADVQALLAKYD 322 (539)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhc
Confidence 33445555555555555555554443
No 261
>PRK11906 transcriptional regulator; Provisional
Probab=93.95 E-value=4.4 Score=37.34 Aligned_cols=145 Identities=14% Similarity=0.054 Sum_probs=82.2
Q ss_pred hHHHHHHHHHHHh-ccccCC-hhhHHHHHHHHHh---------cCChhHHHHHHHHHHhCCCCccHHHHHHHHHHHHhcC
Q 044770 285 VSRAEELWLEMQS-VKQLKA-TEQYNSVISVYCK---------NGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSN 353 (464)
Q Consensus 285 ~~~a~~~~~~~~~-~~~~~~-~~~~~~li~~~~~---------~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~ 353 (464)
.+.|..+|.+... ....|+ ...|..+..++.. .....+|.++-+...+.+. -|+.....+..+....+
T Consensus 274 ~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~-~Da~a~~~~g~~~~~~~ 352 (458)
T PRK11906 274 IYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITT-VDGKILAIMGLITGLSG 352 (458)
T ss_pred HHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHhhc
Confidence 4566777777661 112232 3334444333322 1234456667777776542 26666666666667777
Q ss_pred ChHHHHHHHHHhHHHHhhhhhcCCCCcH-HHHHHHHHHHHhcCChhhHHHHHHHHHHcC-CCCcHHHHHHHHHHHHHcC-
Q 044770 354 LVEEGFKALELGMKLITTKKVRSSTPWL-ETTLSIIEIFAEKGDVGNAENLFEELKKAN-YTKYTFVYNTLIKAYVKAK- 430 (464)
Q Consensus 354 ~~~~a~~~~~~~~~~~~~~~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~p~~~~~~~li~~~~~~g- 430 (464)
+++.|...|+++ ..+.||. .+|......+.-.|+.++|.+.+++..+.. .+.-....-..+..|+.++
T Consensus 353 ~~~~a~~~f~rA---------~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~~~~ 423 (458)
T PRK11906 353 QAKVSHILFEQA---------KIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVPNPL 423 (458)
T ss_pred chhhHHHHHHHH---------hhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcCCch
Confidence 788888888887 4556643 334444444556788888888888865532 1112224444555777776
Q ss_pred CChhHHHHH
Q 044770 431 INDPNLLRR 439 (464)
Q Consensus 431 ~~a~~~~~~ 439 (464)
+.|+.++-+
T Consensus 424 ~~~~~~~~~ 432 (458)
T PRK11906 424 KNNIKLYYK 432 (458)
T ss_pred hhhHHHHhh
Confidence 346665543
No 262
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=93.93 E-value=5.3 Score=37.06 Aligned_cols=58 Identities=19% Similarity=0.075 Sum_probs=31.7
Q ss_pred HHHHHHhcChhhHHHHHHHHHHhccCCC-ChhhHHHHHHHHHhhcChhhHHHHHHHhcc
Q 044770 206 LATAHAVARLYTVAETYVEALEKSMTGN-NWSTLDVLIILYGYLAKGKDLERIWATVQE 263 (464)
Q Consensus 206 li~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 263 (464)
+..++-+.|+.++|++.++++.+..... .......|+.++...+.+.++..++....+
T Consensus 265 LAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdD 323 (539)
T PF04184_consen 265 LAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDD 323 (539)
T ss_pred HHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhcc
Confidence 4444455666666666666665432221 223445566666666666666666666544
No 263
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=93.92 E-value=2.5 Score=33.19 Aligned_cols=31 Identities=6% Similarity=0.118 Sum_probs=15.7
Q ss_pred HHHHHHhCCCCCcHhHHHHHHHHHHhcChhh
Q 044770 187 VYSDMKRSEVEPNEVSYCILATAHAVARLYT 217 (464)
Q Consensus 187 ~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~ 217 (464)
+++.+.+.+++|+...+..++..+.+.|++.
T Consensus 16 YirSl~~~~i~~~~~L~~lli~lLi~~~~~~ 46 (167)
T PF07035_consen 16 YIRSLNQHNIPVQHELYELLIDLLIRNGQFS 46 (167)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHcCCHH
Confidence 3344444455555555555555555555443
No 264
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=93.92 E-value=3.2 Score=34.56 Aligned_cols=200 Identities=18% Similarity=0.071 Sum_probs=95.6
Q ss_pred HHHHHHHHHHhcChhhHHHHHHHHHHhc-cCCCChhhHHHHHHHHHhhcChhhHHHHHHHhccCCCCchhhHHHHHH-Hh
Q 044770 202 SYCILATAHAVARLYTVAETYVEALEKS-MTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSKSYVLAIE-AF 279 (464)
Q Consensus 202 ~~~~li~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~-~~ 279 (464)
.+......+...+....+...+...... ........+......+...+....+...+.........+......... .+
T Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (291)
T COG0457 61 LLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGAL 140 (291)
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHHHH
Confidence 3344444444444444444444444331 122223333333444444444444444444444322222111222222 56
Q ss_pred hccCChHHHHHHHHHHHhccc--cCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCccHHHHHHHHHHHHhcCChHH
Q 044770 280 GRIAQVSRAEELWLEMQSVKQ--LKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEE 357 (464)
Q Consensus 280 ~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~ 357 (464)
...|+++.|...+........ ......+......+...++.+.+...+..............+..+...+...++++.
T Consensus 141 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (291)
T COG0457 141 YELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYEE 220 (291)
T ss_pred HHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccHHH
Confidence 666666777766666644111 012222333333355566777777777776663211124555566666666667777
Q ss_pred HHHHHHHhHHHHhhhhhcCCCCc-HHHHHHHHHHHHhcCChhhHHHHHHHHHHc
Q 044770 358 GFKALELGMKLITTKKVRSSTPW-LETTLSIIEIFAEKGDVGNAENLFEELKKA 410 (464)
Q Consensus 358 a~~~~~~~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 410 (464)
+...+.... ...|+ ...+..+...+...|..+++...+......
T Consensus 221 a~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (291)
T COG0457 221 ALEYYEKAL---------ELDPDNAEALYNLALLLLELGRYEEALEALEKALEL 265 (291)
T ss_pred HHHHHHHHH---------hhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 777777663 22222 233333444444555677777776666654
No 265
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=93.79 E-value=3.6 Score=34.67 Aligned_cols=146 Identities=13% Similarity=0.169 Sum_probs=69.0
Q ss_pred HHHHHhhccCChHHHHHHHHHHHhcccc-----------CChhhHHHHHHHHHhcCChhHHHHHHHHHHhC-CCCccHHH
Q 044770 274 LAIEAFGRIAQVSRAEELWLEMQSVKQL-----------KATEQYNSVISVYCKNGFIDKASGLLKEMSMN-GCKPNAIT 341 (464)
Q Consensus 274 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~-----------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-g~~p~~~~ 341 (464)
-|...|...|.+.+..+++.++...... .-...|..-|..|....+-.....+|++...- .-.|.+..
T Consensus 150 KLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlI 229 (440)
T KOG1464|consen 150 KLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLI 229 (440)
T ss_pred hHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHH
Confidence 4444555555555555555555432111 11235666667777766666666667665542 23344443
Q ss_pred HHHHHHHH-----HhcCChHHHHHHHHHhHHHHhhhhhcCCCCc---HHHHHHHHHHHHhcCChhhHHHHHHHHHHcC--
Q 044770 342 YRHLALGC-----FKSNLVEEGFKALELGMKLITTKKVRSSTPW---LETTLSIIEIFAEKGDVGNAENLFEELKKAN-- 411 (464)
Q Consensus 342 ~~~ll~~~-----~~~~~~~~a~~~~~~~~~~~~~~~~~~~~p~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-- 411 (464)
.. +|+-| .+.|++++|-.-|-++.+-.+ ..-.|- ..-|-.|.+++.+.|-- -|+.-....
T Consensus 230 mG-vIRECGGKMHlreg~fe~AhTDFFEAFKNYD----EsGspRRttCLKYLVLANMLmkS~iN-----PFDsQEAKPyK 299 (440)
T KOG1464|consen 230 MG-VIRECGGKMHLREGEFEKAHTDFFEAFKNYD----ESGSPRRTTCLKYLVLANMLMKSGIN-----PFDSQEAKPYK 299 (440)
T ss_pred Hh-HHHHcCCccccccchHHHHHhHHHHHHhccc----ccCCcchhHHHHHHHHHHHHHHcCCC-----CCcccccCCCC
Confidence 33 33333 345677776544444432211 112222 22255666666665521 111111111
Q ss_pred CCCcHHHHHHHHHHHHHc
Q 044770 412 YTKYTFVYNTLIKAYVKA 429 (464)
Q Consensus 412 ~~p~~~~~~~li~~~~~~ 429 (464)
-.|.+...+.|+.+|-..
T Consensus 300 NdPEIlAMTnlv~aYQ~N 317 (440)
T KOG1464|consen 300 NDPEILAMTNLVAAYQNN 317 (440)
T ss_pred CCHHHHHHHHHHHHHhcc
Confidence 134455666777777654
No 266
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.70 E-value=2.7 Score=32.87 Aligned_cols=123 Identities=11% Similarity=0.054 Sum_probs=66.5
Q ss_pred HHccCChhHHHHHHHHHHhCCCCCcH-hHHHHHHHHHHhcChhhHHHHHHHHHHhccCCCChh-hHHHH--HHHHHhhcC
Q 044770 175 EANDHNIEGLMKVYSDMKRSEVEPNE-VSYCILATAHAVARLYTVAETYVEALEKSMTGNNWS-TLDVL--IILYGYLAK 250 (464)
Q Consensus 175 ~~~~~~~~~a~~~~~~m~~~~~~p~~-~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l--~~~~~~~~~ 250 (464)
+++.+..++|+.-|.++.+.|..-=+ -.--.+.....+.|+...|...|+++-.....|-.. -...+ .-.+...|.
T Consensus 68 lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gs 147 (221)
T COG4649 68 LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGS 147 (221)
T ss_pred HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhcccc
Confidence 35566777777777777766533111 111112223456777777777777776544444322 11111 122345566
Q ss_pred hhhHHHHHHHhcc-CCCCchhhHHHHHHHhhccCChHHHHHHHHHHHh
Q 044770 251 GKDLERIWATVQE-LPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQS 297 (464)
Q Consensus 251 ~~~a~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 297 (464)
++++....+.+.. ..+.....-.+|.-+-.+.|++..|.+.|..+..
T Consensus 148 y~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 148 YDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 6666655555544 2222333344566666677777777777777665
No 267
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.66 E-value=2.3 Score=41.76 Aligned_cols=180 Identities=14% Similarity=0.028 Sum_probs=101.3
Q ss_pred hHHHHHHHHHhhcChHHHHHHhhhcCCCCC-chhHHHHHHHHHHhhCcHHHHHHHHHHHHHcCCCCchhhHHHHHHHhcC
Q 044770 64 DYSYLLEFTIKNHGISQGEKLFCCIPKDYQ-NELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSS 142 (464)
Q Consensus 64 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~ 142 (464)
....-+..+.+..-++-|..+-+.-..... -........+-+-+.|++++|...|-+-+.. +.|.. ++.-|..
T Consensus 336 ~le~kL~iL~kK~ly~~Ai~LAk~~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~s~-----Vi~kfLd 409 (933)
T KOG2114|consen 336 DLETKLDILFKKNLYKVAINLAKSQHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEPSE-----VIKKFLD 409 (933)
T ss_pred cHHHHHHHHHHhhhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CChHH-----HHHHhcC
Confidence 345666666777777777776665443100 1122333344455678888887777655542 23322 4455556
Q ss_pred CCCcccHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCcHhHHHHHHHHHHhcChhhHHHHH
Q 044770 143 PGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETY 222 (464)
Q Consensus 143 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~ 222 (464)
......-..+++.+.+.|+ .+...-+.|+.+|.+.++.+.-.++.+.-. .|.. ..-....+..|-+.+-.++|..+
T Consensus 410 aq~IknLt~YLe~L~~~gl-a~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~--~fd~e~al~Ilr~snyl~~a~~L 485 (933)
T KOG2114|consen 410 AQRIKNLTSYLEALHKKGL-ANSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEW--FFDVETALEILRKSNYLDEAELL 485 (933)
T ss_pred HHHHHHHHHHHHHHHHccc-ccchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccce--eeeHHHHHHHHHHhChHHHHHHH
Confidence 6666666677777777773 455556677888888888777666655443 2211 11234455566666666666555
Q ss_pred HHHHHhccCCCChhhHHHHHHHHHhhcChhhHHHHHHHh
Q 044770 223 VEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATV 261 (464)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 261 (464)
-..... +..... -.+-..+++++|.+.++.+
T Consensus 486 A~k~~~-----he~vl~---ille~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 486 ATKFKK-----HEWVLD---ILLEDLHNYEEALRYISSL 516 (933)
T ss_pred HHHhcc-----CHHHHH---HHHHHhcCHHHHHHHHhcC
Confidence 444322 222222 2334566777777776655
No 268
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=93.42 E-value=8.5 Score=38.00 Aligned_cols=87 Identities=10% Similarity=0.136 Sum_probs=39.5
Q ss_pred HHHHhcChhhHHHHHHHHHHhccCCCChhhHHHHHHHHHhhcChhhHH-HHHHHhccCCCCchhhHHHHHHHhhc---cC
Q 044770 208 TAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLE-RIWATVQELPNVRSKSYVLAIEAFGR---IA 283 (464)
Q Consensus 208 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~-~~~~~~~~~~~~~~~~~~~l~~~~~~---~g 283 (464)
..+.-.|+++.|++++-. ..+...+...+...+..|+-.+-.+... .++..-...+++ .-+..||..|.+ ..
T Consensus 266 ~~LlLtgqFE~AI~~L~~--~~~~~~dAVH~AIaL~~~gLL~~~~~~~~~lls~~~~~~~~--ln~arLI~~Y~~~F~~t 341 (613)
T PF04097_consen 266 QVLLLTGQFEAAIEFLYR--NEFNRVDAVHFAIALAYYGLLRVSDSSSAPLLSVDPGDPPP--LNFARLIGQYTRSFEIT 341 (613)
T ss_dssp HHHHHTT-HHHHHHHHHT----T-HHHHHHHHHHHHHTT--------------------------HHHHHHHHHHTTTTT
T ss_pred HHHHHHhhHHHHHHHHHh--hccCcccHHHHHHHHHHcCCCCCCCccccceeeecCCCCCC--cCHHHHHHHHHHHHhcc
Confidence 344557888888888776 2223445555555555444333322222 111111111111 447788888875 56
Q ss_pred ChHHHHHHHHHHHhc
Q 044770 284 QVSRAEELWLEMQSV 298 (464)
Q Consensus 284 ~~~~a~~~~~~~~~~ 298 (464)
+...|.+.|--+...
T Consensus 342 d~~~Al~Y~~li~~~ 356 (613)
T PF04097_consen 342 DPREALQYLYLICLF 356 (613)
T ss_dssp -HHHHHHHHHGGGGS
T ss_pred CHHHHHHHHHHHHHc
Confidence 778888888776653
No 269
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=93.41 E-value=0.7 Score=39.59 Aligned_cols=77 Identities=12% Similarity=-0.003 Sum_probs=51.2
Q ss_pred hHHHHHHHHHccCChhHHHHHHHHHHhCCCCCcHhHHHHHHHHHHhcChhhHHHHHHHHHHh-----ccCCCChhhHHHH
Q 044770 167 TFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEK-----SMTGNNWSTLDVL 241 (464)
Q Consensus 167 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~~l 241 (464)
++..++..+...|+++.+...++++.... +-+...|..+|.+|.+.|+...|+..|+.+.+ .|+.|...+....
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y 233 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALY 233 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHH
Confidence 45566677777777777777777776654 33666777777777777777777777766643 4666666665555
Q ss_pred HHH
Q 044770 242 IIL 244 (464)
Q Consensus 242 ~~~ 244 (464)
...
T Consensus 234 ~~~ 236 (280)
T COG3629 234 EEI 236 (280)
T ss_pred HHH
Confidence 555
No 270
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.38 E-value=4 Score=33.94 Aligned_cols=136 Identities=12% Similarity=0.050 Sum_probs=69.3
Q ss_pred HHHHHHHHHhhcChHHHHHHhhhcCCCCCchhHHHHHHHHHHhhCcHHHHHHHHHHHHHcCCCCchhhHHHHHHHhcCCC
Q 044770 65 YSYLLEFTIKNHGISQGEKLFCCIPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPG 144 (464)
Q Consensus 65 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~ 144 (464)
|..-..+|....++++|...+.+..+..-+...+ +-....++.|.-+..+|... +--+..|+.....|..+|
T Consensus 34 yekAAvafRnAk~feKakdcLlkA~~~yEnnrsl------fhAAKayEqaamLake~~kl--sEvvdl~eKAs~lY~E~G 105 (308)
T KOG1585|consen 34 YEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSL------FHAAKAYEQAAMLAKELSKL--SEVVDLYEKASELYVECG 105 (308)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccH------HHHHHHHHHHHHHHHHHHHh--HHHHHHHHHHHHHHHHhC
Confidence 4444456667777888877776655321111111 11122345555555555542 223445666667777888
Q ss_pred CcccHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHh---CC--CCCcHhHHHHHHHHHHhcChhhHH
Q 044770 145 RRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKR---SE--VEPNEVSYCILATAHAVARLYTVA 219 (464)
Q Consensus 145 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~---~~--~~p~~~~~~~li~~~~~~~~~~~a 219 (464)
.++.|-..++..-+ ..+.-+++.|+++|++-.. .+ .+.-...+...-..+.+.+.+++|
T Consensus 106 spdtAAmaleKAak----------------~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Ea 169 (308)
T KOG1585|consen 106 SPDTAAMALEKAAK----------------ALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEA 169 (308)
T ss_pred CcchHHHHHHHHHH----------------HhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHH
Confidence 77777777666543 1233445555555554321 11 011122233444556666666666
Q ss_pred HHHHH
Q 044770 220 ETYVE 224 (464)
Q Consensus 220 ~~~~~ 224 (464)
-..+.
T Consensus 170 a~a~l 174 (308)
T KOG1585|consen 170 ATAFL 174 (308)
T ss_pred HHHHH
Confidence 55443
No 271
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=93.36 E-value=5.2 Score=35.13 Aligned_cols=63 Identities=21% Similarity=0.256 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHhccccCC-hhhHHHHHHHHHhc-CC--hhHHHHHHHHHHhCCCCccHHHHHHHHHH
Q 044770 286 SRAEELWLEMQSVKQLKA-TEQYNSVISVYCKN-GF--IDKASGLLKEMSMNGCKPNAITYRHLALG 348 (464)
Q Consensus 286 ~~a~~~~~~~~~~~~~~~-~~~~~~li~~~~~~-~~--~~~a~~~~~~m~~~g~~p~~~~~~~ll~~ 348 (464)
+.++.+|+.+.+.|...+ ...+.+-+-++... .. ...+.++++.+.+.|+++....|..+.-.
T Consensus 160 ~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGlL 226 (297)
T PF13170_consen 160 ERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGLL 226 (297)
T ss_pred HHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHHH
Confidence 456666777776565543 21222222223221 11 45778888999999988877776655433
No 272
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=93.34 E-value=0.35 Score=28.06 Aligned_cols=28 Identities=14% Similarity=0.084 Sum_probs=18.0
Q ss_pred HHHHHHHHHHhhCcHHHHHHHHHHHHHc
Q 044770 97 LYNNLVIACLDKGVIKLSLEYMKKMRVL 124 (464)
Q Consensus 97 ~~~~li~~~~~~~~~~~a~~~~~~m~~~ 124 (464)
+|..+...|...|++++|.++|++.++.
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~ 30 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALAL 30 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4555666666666666666666666664
No 273
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=93.30 E-value=0.66 Score=39.74 Aligned_cols=78 Identities=18% Similarity=0.178 Sum_probs=53.0
Q ss_pred hHHHHHHHHHHhhCcHHHHHHHHHHHHHcCCCCchhhHHHHHHHhcCCCCcccHHHHHHHHHh-----CCCCCChhhHHH
Q 044770 96 LLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKA-----DKVAPHVSTFHI 170 (464)
Q Consensus 96 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~~ 170 (464)
.++..++..+...|+++.+...++++.... +-+...|..++.+|.+.|+...|+..|+++.+ .|+.|...+...
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~ 232 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRAL 232 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHH
Confidence 455666667777777777777777777653 44666777777777777777777777776654 467777766666
Q ss_pred HHHH
Q 044770 171 LMKI 174 (464)
Q Consensus 171 l~~~ 174 (464)
....
T Consensus 233 y~~~ 236 (280)
T COG3629 233 YEEI 236 (280)
T ss_pred HHHH
Confidence 6555
No 274
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=93.25 E-value=3.3 Score=32.52 Aligned_cols=51 Identities=8% Similarity=0.256 Sum_probs=27.9
Q ss_pred HHHHHHHhCCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCcHhHHHH
Q 044770 151 NILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCI 205 (464)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ 205 (464)
+++..+.+.+++|+...+..+++.+.+.|++.. +.++.+.++-+|......
T Consensus 15 EYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~----L~qllq~~Vi~DSk~lA~ 65 (167)
T PF07035_consen 15 EYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQ----LHQLLQYHVIPDSKPLAC 65 (167)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHH----HHHHHhhcccCCcHHHHH
Confidence 344444555666666666666666666666443 334444454555444433
No 275
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.02 E-value=0.35 Score=41.34 Aligned_cols=98 Identities=10% Similarity=0.052 Sum_probs=53.8
Q ss_pred CCCCchhHHHHHHHHHhhcChHHHHHHhhhcCCC-----CC--chhHHHHHHHHHHhhCcHHHHHHHHHHHHHcCCCCch
Q 044770 58 YRPKELDYSYLLEFTIKNHGISQGEKLFCCIPKD-----YQ--NELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISY 130 (464)
Q Consensus 58 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~~--~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~ 130 (464)
.+.+..+-..++..-....+++.+...+=++... .+ +..+|-.++. .-++++++.++..=++.|+-||.
T Consensus 60 ~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irlll----ky~pq~~i~~l~npIqYGiF~dq 135 (418)
T KOG4570|consen 60 LPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRLLL----KYDPQKAIYTLVNPIQYGIFPDQ 135 (418)
T ss_pred CCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHHHH----ccChHHHHHHHhCcchhccccch
Confidence 3344444455555545556666666666555443 11 1222222222 22455666666666666666666
Q ss_pred hhHHHHHHHhcCCCCcccHHHHHHHHHhC
Q 044770 131 LVFNRLIILNSSPGRRKTIPNILRQMKAD 159 (464)
Q Consensus 131 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 159 (464)
.+++.+|+.+.+.+++.+|.++.-.|...
T Consensus 136 f~~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 136 FTFCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred hhHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 66666666666666666666666655543
No 276
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=92.97 E-value=4.9 Score=33.78 Aligned_cols=58 Identities=16% Similarity=0.047 Sum_probs=31.0
Q ss_pred HHHHHhcCChHHHHHHHHHhHHHHhhhhhcCCCC-cHHHHHHHHHHHHhcCChhhHHHHHHHHHH
Q 044770 346 ALGCFKSNLVEEGFKALELGMKLITTKKVRSSTP-WLETTLSIIEIFAEKGDVGNAENLFEELKK 409 (464)
Q Consensus 346 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 409 (464)
.+-|.+.|.+..|..-++.+++. ..-.+ ....+-.+..+|...|-.++|.+.-+-+..
T Consensus 174 aryY~kr~~~~AA~nR~~~v~e~------y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~ 232 (254)
T COG4105 174 ARYYLKRGAYVAAINRFEEVLEN------YPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGA 232 (254)
T ss_pred HHHHHHhcChHHHHHHHHHHHhc------cccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHh
Confidence 34466666666666666666421 11111 123344566666667777666666544443
No 277
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=92.84 E-value=1.1 Score=35.91 Aligned_cols=61 Identities=11% Similarity=0.060 Sum_probs=30.3
Q ss_pred HHHHHHHHHHhhCcHHHHHHHHHHHHHcCCCCc--hhhHHHHHHHhcCCCCcccHHHHHHHHH
Q 044770 97 LYNNLVIACLDKGVIKLSLEYMKKMRVLGHSIS--YLVFNRLIILNSSPGRRKTIPNILRQMK 157 (464)
Q Consensus 97 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 157 (464)
.+..+...|++.|+.+.|++.|.++.+....+. ...+-.+|+...-.+++..+...+.+..
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~ 100 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAE 100 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 444555555555555555555555554332222 2334444555555555555555544443
No 278
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=92.82 E-value=5.7 Score=34.15 Aligned_cols=53 Identities=11% Similarity=-0.056 Sum_probs=24.5
Q ss_pred HHhcChhhHHHHHHHHHHhccCCCChhhHHHHHHHHHhhcChhhHHHHHHHhcc
Q 044770 210 HAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQE 263 (464)
Q Consensus 210 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 263 (464)
....|++.+|...|+...... +-+......+..+|...|+.+.|..++..+..
T Consensus 144 ~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~ 196 (304)
T COG3118 144 LIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALPL 196 (304)
T ss_pred hhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCcc
Confidence 344555555555555554432 11233333444444445555555444444433
No 279
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=92.73 E-value=5.9 Score=34.06 Aligned_cols=178 Identities=7% Similarity=0.029 Sum_probs=103.2
Q ss_pred hHHHHHHHHHHHHcCCCCCCchhHHHHHHHHHhhcC-------hHHHHHHhhhcCCC-CC-chhHHHHHHHHHHhhCcHH
Q 044770 42 NKRALEVMEWVIRERPYRPKELDYSYLLEFTIKNHG-------ISQGEKLFCCIPKD-YQ-NELLYNNLVIACLDKGVIK 112 (464)
Q Consensus 42 ~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-------~~~a~~~~~~~~~~-~~-~~~~~~~li~~~~~~~~~~ 112 (464)
|..=.++|..+-. ..|.......++.-|....+ -++-...++-.... .+ ...-|..|+. ....+.
T Consensus 72 W~~R~~Fl~lLn~---~~p~~y~~~~~~~DYf~lK~s~g~~Lt~~Dli~FL~~~i~~~~~~k~~~Y~~LVk---~N~~Vv 145 (292)
T PF13929_consen 72 WSLRLKFLKLLNI---ADPQNYSVRRFINDYFLLKKSMGCELTKEDLISFLKLVIINLSSNKSFNYWDLVK---RNKIVV 145 (292)
T ss_pred HHHHHHHHHHHhh---cCcccCCHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhccccccchHHHHHHH---hhHHHH
Confidence 3334445544433 34555666666654443221 12334444442222 11 1112555543 334566
Q ss_pred HHHHHHHHHHH-cCCCCchhhHHHHHHHhcCCC--CcccHHHHHHHHHhC-CCCCChhhHHHHHHHHHccCChhHHHHHH
Q 044770 113 LSLEYMKKMRV-LGHSISYLVFNRLIILNSSPG--RRKTIPNILRQMKAD-KVAPHVSTFHILMKIEANDHNIEGLMKVY 188 (464)
Q Consensus 113 ~a~~~~~~m~~-~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 188 (464)
+|+.+|+.... ..+--|..+...+++...... ....-.++.+-+... |-.++..+....+..+++.++|..-.+++
T Consensus 146 ~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~~fW 225 (292)
T PF13929_consen 146 EALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLFQFW 225 (292)
T ss_pred HHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHHHHH
Confidence 77887774322 234557777777777765522 233333444444432 34677777788888888888888888888
Q ss_pred HHHHhC-CCCCcHhHHHHHHHHHHhcChhhHHHHHHHH
Q 044770 189 SDMKRS-EVEPNEVSYCILATAHAVARLYTVAETYVEA 225 (464)
Q Consensus 189 ~~m~~~-~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~ 225 (464)
+.-... +..-|...|..+|+...+.|+..-...+..+
T Consensus 226 ~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~ 263 (292)
T PF13929_consen 226 EQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDD 263 (292)
T ss_pred HHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhC
Confidence 877655 4566778888888888888888766665554
No 280
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=92.73 E-value=0.32 Score=26.75 Aligned_cols=26 Identities=23% Similarity=0.266 Sum_probs=19.2
Q ss_pred HHHHHHHHHHhhCcHHHHHHHHHHHH
Q 044770 97 LYNNLVIACLDKGVIKLSLEYMKKMR 122 (464)
Q Consensus 97 ~~~~li~~~~~~~~~~~a~~~~~~m~ 122 (464)
+|+.|...|.+.|++++|+++|++.+
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 46777788888888888888887754
No 281
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=92.71 E-value=3.8 Score=31.77 Aligned_cols=20 Identities=0% Similarity=0.197 Sum_probs=10.8
Q ss_pred HHccCChhHHHHHHHHHHhC
Q 044770 175 EANDHNIEGLMKVYSDMKRS 194 (464)
Q Consensus 175 ~~~~~~~~~a~~~~~~m~~~ 194 (464)
+...|+|++|..+|+++.+.
T Consensus 54 ~i~r~~w~dA~rlLr~l~~~ 73 (160)
T PF09613_consen 54 HIVRGDWDDALRLLRELEER 73 (160)
T ss_pred HHHhCCHHHHHHHHHHHhcc
Confidence 34555555555555555443
No 282
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=92.46 E-value=7.4 Score=34.52 Aligned_cols=48 Identities=15% Similarity=0.032 Sum_probs=25.1
Q ss_pred HHhhcchHHHHHHHHHHHHcCC-CCCCchhHHHHHHHHHhhcChHHHHH
Q 044770 36 LRKLQLNKRALEVMEWVIRERP-YRPKELDYSYLLEFTIKNHGISQGEK 83 (464)
Q Consensus 36 ~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~ 83 (464)
+....+.+.|+..+.....+.. ......++..+..+.++.|.+++++.
T Consensus 16 Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~ 64 (518)
T KOG1941|consen 16 LYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLK 64 (518)
T ss_pred HhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHH
Confidence 4455666777777666554211 11122345555556666666655543
No 283
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=92.43 E-value=0.35 Score=26.57 Aligned_cols=26 Identities=19% Similarity=0.328 Sum_probs=22.1
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHH
Q 044770 383 TTLSIIEIFAEKGDVGNAENLFEELK 408 (464)
Q Consensus 383 ~~~~li~~~~~~g~~~~A~~~~~~m~ 408 (464)
+|+.|...|.+.|++++|.+++++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 46789999999999999999999855
No 284
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.42 E-value=12 Score=37.08 Aligned_cols=182 Identities=12% Similarity=0.066 Sum_probs=119.2
Q ss_pred cChhchHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCCc--hhHHHHHHHHHhhcChHHHHHHhhhcCCC-CCchhHHHH
Q 044770 24 VHRGEIFHSINRLRKLQLNKRALEVMEWVIRERPYRPKE--LDYSYLLEFTIKNHGISQGEKLFCCIPKD-YQNELLYNN 100 (464)
Q Consensus 24 ~~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~ 100 (464)
..+.....-+..+.+..-++.|+.+.+.- +..++. .......+.+-+.|++++|...+-+-... .|+ .
T Consensus 332 L~ek~le~kL~iL~kK~ly~~Ai~LAk~~----~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~le~s-----~ 402 (933)
T KOG2114|consen 332 LIEKDLETKLDILFKKNLYKVAINLAKSQ----HLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGFLEPS-----E 402 (933)
T ss_pred eeeccHHHHHHHHHHhhhHHHHHHHHHhc----CCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccCChH-----H
Confidence 34455667778888888888888876543 222221 22334445566889999999888765543 332 3
Q ss_pred HHHHHHhhCcHHHHHHHHHHHHHcCCCCchhhHHHHHHHhcCCCCcccHHHHHHHHHhCCCCCChhhHHHHHHHHHccCC
Q 044770 101 LVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHN 180 (464)
Q Consensus 101 li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 180 (464)
+|.-|....+..+-...++.+.+.|+. +...-..|+.+|.+.++.++-.++.+... .|.. ..-....+..+.+.+-
T Consensus 403 Vi~kfLdaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~--~fd~e~al~Ilr~sny 478 (933)
T KOG2114|consen 403 VIKKFLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEW--FFDVETALEILRKSNY 478 (933)
T ss_pred HHHHhcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccce--eeeHHHHHHHHHHhCh
Confidence 566677888888888899999999865 55666789999999999888777766543 2211 1113456667777777
Q ss_pred hhHHHHHHHHHHhCCCCCcHhHHHHHHHHHHhcChhhHHHHHHHHH
Q 044770 181 IEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEAL 226 (464)
Q Consensus 181 ~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~ 226 (464)
.++|.-+-..... .......++. ..+++++|+++++.+
T Consensus 479 l~~a~~LA~k~~~-----he~vl~ille---~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 479 LDEAELLATKFKK-----HEWVLDILLE---DLHNYEEALRYISSL 516 (933)
T ss_pred HHHHHHHHHHhcc-----CHHHHHHHHH---HhcCHHHHHHHHhcC
Confidence 7777665554432 3344444443 467888888887764
No 285
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=92.39 E-value=5.5 Score=34.21 Aligned_cols=136 Identities=13% Similarity=0.135 Sum_probs=88.4
Q ss_pred hcChHHHHHHhhhcCC--C-CCchhHHHHHHHHHHh-hC-cHHHHHHHHHHHHH-cCCCCchhhHHHHHHHhcCCCCccc
Q 044770 75 NHGISQGEKLFCCIPK--D-YQNELLYNNLVIACLD-KG-VIKLSLEYMKKMRV-LGHSISYLVFNRLIILNSSPGRRKT 148 (464)
Q Consensus 75 ~g~~~~a~~~~~~~~~--~-~~~~~~~~~li~~~~~-~~-~~~~a~~~~~~m~~-~~~~~~~~~~~~l~~~~~~~~~~~~ 148 (464)
..-+-+|+.+|+.... . ..|..+-..+++.... .+ ....-.++.+-+.. .|-.++..+...++..++..++|..
T Consensus 141 N~~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~k 220 (292)
T PF13929_consen 141 NKIVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNK 220 (292)
T ss_pred hHHHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHH
Confidence 3446677777773322 1 3355666666666555 22 22223333444433 3356788888889999999999999
Q ss_pred HHHHHHHHHhC-CCCCChhhHHHHHHHHHccCChhHHHHHHHH-----HHhCCCCCcHhHHHHHHHHH
Q 044770 149 IPNILRQMKAD-KVAPHVSTFHILMKIEANDHNIEGLMKVYSD-----MKRSEVEPNEVSYCILATAH 210 (464)
Q Consensus 149 a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~-----m~~~~~~p~~~~~~~li~~~ 210 (464)
..++++..... +...|...|..+|+...+.|+..-..++.++ +++.++..+...-..+-..+
T Consensus 221 l~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~GhLLwikR~~V~v~~~L~~~L~~LF 288 (292)
T PF13929_consen 221 LFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDDGHLLWIKRNNVDVTDELRSQLSELF 288 (292)
T ss_pred HHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhCCCeEEeeecCCcCCHHHHHHHHHHH
Confidence 99998887765 5567888899999999999998877777664 24455665655555444443
No 286
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=91.85 E-value=0.44 Score=27.65 Aligned_cols=26 Identities=23% Similarity=0.336 Sum_probs=12.1
Q ss_pred HHHHHHHhhccCChHHHHHHHHHHHh
Q 044770 272 YVLAIEAFGRIAQVSRAEELWLEMQS 297 (464)
Q Consensus 272 ~~~l~~~~~~~g~~~~a~~~~~~~~~ 297 (464)
+..+...|...|++++|.++|++..+
T Consensus 4 ~~~la~~~~~~G~~~~A~~~~~~~l~ 29 (44)
T PF13428_consen 4 WLALARAYRRLGQPDEAERLLRRALA 29 (44)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 33444444444444444444444444
No 287
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=91.67 E-value=6.4 Score=32.16 Aligned_cols=27 Identities=11% Similarity=0.175 Sum_probs=15.9
Q ss_pred hHHHHHHHhhccCChHHHHHHHHHHHh
Q 044770 271 SYVLAIEAFGRIAQVSRAEELWLEMQS 297 (464)
Q Consensus 271 ~~~~l~~~~~~~g~~~~a~~~~~~~~~ 297 (464)
+|--+..-+...|+.++|..+|+-...
T Consensus 239 tyFYL~K~~l~~G~~~~A~~LfKLaia 265 (297)
T COG4785 239 TYFYLGKYYLSLGDLDEATALFKLAVA 265 (297)
T ss_pred HHHHHHHHHhccccHHHHHHHHHHHHH
Confidence 455555556666666666666665554
No 288
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=91.59 E-value=9 Score=33.67 Aligned_cols=131 Identities=14% Similarity=0.173 Sum_probs=82.9
Q ss_pred HHHHHHHHHHHHHcCCCCchhhHHHHHHHhcC--CC----CcccHHHHHHHHHhCCC---CCChhhHHHHHHHHHccCC-
Q 044770 111 IKLSLEYMKKMRVLGHSISYLVFNRLIILNSS--PG----RRKTIPNILRQMKADKV---APHVSTFHILMKIEANDHN- 180 (464)
Q Consensus 111 ~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~--~~----~~~~a~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~- 180 (464)
+++.+.+++.|.+.|+.-+..+|-+..-.... .. ....|..+|+.|++.-. .++..++..++.. ..++
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 45567788899999998888777664443333 22 24578889999987521 3445556656543 3333
Q ss_pred ---hhHHHHHHHHHHhCCCCCcH--hHHHHHHHHHHhcCh--hhHHHHHHHHHHhccCCCChhhHHHHHH
Q 044770 181 ---IEGLMKVYSDMKRSEVEPNE--VSYCILATAHAVARL--YTVAETYVEALEKSMTGNNWSTLDVLII 243 (464)
Q Consensus 181 ---~~~a~~~~~~m~~~~~~p~~--~~~~~li~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 243 (464)
.+.+..+|+.+.+.|+..+. ...+.++..+..... ...+..+++.+.+.|+++....|..+.-
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGl 225 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGL 225 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHH
Confidence 35677888888887866543 233444433322222 3477888888999888887777665543
No 289
>PRK11619 lytic murein transglycosylase; Provisional
Probab=91.54 E-value=16 Score=36.33 Aligned_cols=140 Identities=9% Similarity=-0.023 Sum_probs=77.4
Q ss_pred HHHhhcchHHHHHHHHHHHHcCCCCCCchhHHHHHHHHHhhcChHHHHHHhhhcCCCCCchhHHHHHHHHHHhhCcHHHH
Q 044770 35 RLRKLQLNKRALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQGEKLFCCIPKDYQNELLYNNLVIACLDKGVIKLS 114 (464)
Q Consensus 35 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a 114 (464)
...+.|++..+.++...+.. .+. .....|..+...+ .....++....+++-+..+.....-...+..+.+.+++...
T Consensus 42 ~a~~~g~~~~~~~~~~~l~d-~pL-~~yl~y~~L~~~l-~~~~~~ev~~Fl~~~~~~P~~~~Lr~~~l~~La~~~~w~~~ 118 (644)
T PRK11619 42 QAWDNRQMDVVEQLMPTLKD-YPL-YPYLEYRQLTQDL-MNQPAVQVTNFIRANPTLPPARSLQSRFVNELARREDWRGL 118 (644)
T ss_pred HHHHCCCHHHHHHHHHhccC-CCc-HhHHHHHHHHhcc-ccCCHHHHHHHHHHCCCCchHHHHHHHHHHHHHHccCHHHH
Confidence 34456677777666665532 221 1112222222211 12356677777777766433334444455556677788777
Q ss_pred HHHHHHHHHcCCCCchhhHHHHHHHhcCCCCcccHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhH
Q 044770 115 LEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEG 183 (464)
Q Consensus 115 ~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 183 (464)
+..+. . .+.+...-.....+....|+.++|......+=..| ......++.+++.+.+.|.+..
T Consensus 119 ~~~~~----~-~p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g-~~~p~~cd~l~~~~~~~g~lt~ 181 (644)
T PRK11619 119 LAFSP----E-KPKPVEARCNYYYAKWATGQQQEAWQGAKELWLTG-KSLPNACDKLFSVWQQSGKQDP 181 (644)
T ss_pred HHhcC----C-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-CCCChHHHHHHHHHHHcCCCCH
Confidence 76331 1 24455556667777778888777766666654444 3445566677777766555443
No 290
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=91.49 E-value=5 Score=30.58 Aligned_cols=57 Identities=7% Similarity=-0.066 Sum_probs=36.0
Q ss_pred HHHHhhcchHHHHHHHHHHHHcCCCCCCchhHHHHHHHHHhhcChHHHHHHhhhcCCCC
Q 044770 34 NRLRKLQLNKRALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQGEKLFCCIPKDY 92 (464)
Q Consensus 34 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 92 (464)
..-...++++++..+++-+.--.+-.+...++.. ..+...|++++|.++|+++....
T Consensus 18 ~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg--~l~i~rg~w~eA~rvlr~l~~~~ 74 (153)
T TIGR02561 18 MYALRSADPYDAQAMLDALRVLRPNLKELDMFDG--WLLIARGNYDEAARILRELLSSA 74 (153)
T ss_pred HHHHhcCCHHHHHHHHHHHHHhCCCccccchhHH--HHHHHcCCHHHHHHHHHhhhccC
Confidence 3334577788888888877663333333333333 34567788888888888887753
No 291
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=91.48 E-value=1.4 Score=30.49 Aligned_cols=46 Identities=13% Similarity=-0.031 Sum_probs=37.9
Q ss_pred hhHHHHHHHHHHhCCCCccHHHHHHHHHHHHhcCChHHHHHHHHHh
Q 044770 320 IDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELG 365 (464)
Q Consensus 320 ~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 365 (464)
.-++.+-++.+....+.|++......+++|-+.+++..|+++++..
T Consensus 23 ~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~v 68 (103)
T cd00923 23 GWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAI 68 (103)
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 3356666777777778899999999999999999999999999877
No 292
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=91.38 E-value=20 Score=37.30 Aligned_cols=109 Identities=14% Similarity=0.099 Sum_probs=63.2
Q ss_pred HHHHHHHhhccCChHHHHHHHHHHHhccccCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCccH--HHHHHHHHHH
Q 044770 272 YVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNA--ITYRHLALGC 349 (464)
Q Consensus 272 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~--~~~~~ll~~~ 349 (464)
|.+..+.+...+.+++|.-.|+..-+ ...-+.+|..+|+|.+|+.+..++... -|. .+-..|..-+
T Consensus 942 ~~~ya~hL~~~~~~~~Aal~Ye~~Gk---------lekAl~a~~~~~dWr~~l~~a~ql~~~---~de~~~~a~~L~s~L 1009 (1265)
T KOG1920|consen 942 YEAYADHLREELMSDEAALMYERCGK---------LEKALKAYKECGDWREALSLAAQLSEG---KDELVILAEELVSRL 1009 (1265)
T ss_pred HHHHHHHHHHhccccHHHHHHHHhcc---------HHHHHHHHHHhccHHHHHHHHHhhcCC---HHHHHHHHHHHHHHH
Confidence 44444555556666666666655443 233556677777777777777765431 122 1224566667
Q ss_pred HhcCChHHHHHHHHHhHHHHhhhhhcCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHH
Q 044770 350 FKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEEL 407 (464)
Q Consensus 350 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 407 (464)
...+++-+|-++..+.. ..|. -.+..|++...+++|.++....
T Consensus 1010 ~e~~kh~eAa~il~e~~----------sd~~-----~av~ll~ka~~~~eAlrva~~~ 1052 (1265)
T KOG1920|consen 1010 VEQRKHYEAAKILLEYL----------SDPE-----EAVALLCKAKEWEEALRVASKA 1052 (1265)
T ss_pred HHcccchhHHHHHHHHh----------cCHH-----HHHHHHhhHhHHHHHHHHHHhc
Confidence 77777777777776652 2222 3455566667777777665433
No 293
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.05 E-value=17 Score=35.87 Aligned_cols=103 Identities=11% Similarity=0.046 Sum_probs=57.6
Q ss_pred HHHHHHhhcchHHHHHHHHHHHHcCCCCC---CchhHHHHHHHHHhhcChHHHHHHhhhcCCCCCchhHHHHHHHHHHhh
Q 044770 32 SINRLRKLQLNKRALEVMEWVIRERPYRP---KELDYSYLLEFTIKNHGISQGEKLFCCIPKDYQNELLYNNLVIACLDK 108 (464)
Q Consensus 32 ~l~~~~~~~~~~~A~~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~li~~~~~~ 108 (464)
=++.+.+.+.+++|+.+.+.... ..| -...+...+..+...|++++|-...-.|.. .+...|..-+..+...
T Consensus 362 hi~Wll~~k~yeeAl~~~k~~~~---~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~g--n~~~eWe~~V~~f~e~ 436 (846)
T KOG2066|consen 362 HIDWLLEKKKYEEALDAAKASIG---NEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLG--NNAAEWELWVFKFAEL 436 (846)
T ss_pred hHHHHHHhhHHHHHHHHHHhccC---CccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhc--chHHHHHHHHHHhccc
Confidence 35566677777888777765533 333 234566677777777777777777666665 3555555555555555
Q ss_pred CcHHHHHHHHHHHHHcCCCCchhhHHHHHHHhcC
Q 044770 109 GVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSS 142 (464)
Q Consensus 109 ~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~ 142 (464)
++......++ .......+...|..++..+..
T Consensus 437 ~~l~~Ia~~l---Pt~~~rL~p~vYemvLve~L~ 467 (846)
T KOG2066|consen 437 DQLTDIAPYL---PTGPPRLKPLVYEMVLVEFLA 467 (846)
T ss_pred cccchhhccC---CCCCcccCchHHHHHHHHHHH
Confidence 5443332221 111112344556655555544
No 294
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=90.98 E-value=1.2 Score=31.14 Aligned_cols=57 Identities=14% Similarity=0.154 Sum_probs=34.7
Q ss_pred hhhHHHHhhcCccChhchHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCCchhHHHHHH
Q 044770 12 SAFQSWMREGFPVHRGEIFHSINRLRKLQLNKRALEVMEWVIRERPYRPKELDYSYLLE 70 (464)
Q Consensus 12 ~~l~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~ 70 (464)
.-+..+....+-|++..+...+++|.+.+++..|.++|+-+..+.+. ....|..++.
T Consensus 31 rglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~--~~~~Y~~~lq 87 (108)
T PF02284_consen 31 RGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGN--KKEIYPYILQ 87 (108)
T ss_dssp HHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT---TTHHHHHHH
T ss_pred HHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccC--hHHHHHHHHH
Confidence 33444555567778888888888888888888888888877765442 2236666554
No 295
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=90.94 E-value=13 Score=34.36 Aligned_cols=87 Identities=11% Similarity=0.014 Sum_probs=38.7
Q ss_pred HHhhcChhhHHHHHHHhccCCCCchhhHHHHHHHhhccCChHHHHHHHHHHHhccccCChhhHHHHHHHHHhcCChhHHH
Q 044770 245 YGYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKAS 324 (464)
Q Consensus 245 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~ 324 (464)
....|+++.+.+.+............+...+++...+.|+++.|...-+.|....+. ++.........--..|-++++.
T Consensus 333 ~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~ 411 (831)
T PRK15180 333 FSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREALSTAEMMLSNEIE-DEEVLTVAAGSADALQLFDKSY 411 (831)
T ss_pred HHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHHHHHHHHhccccC-ChhheeeecccHHHHhHHHHHH
Confidence 344555555555555444433333444445555555555555555555544442221 2222222222222334445555
Q ss_pred HHHHHHHh
Q 044770 325 GLLKEMSM 332 (464)
Q Consensus 325 ~~~~~m~~ 332 (464)
..|++...
T Consensus 412 ~~wk~~~~ 419 (831)
T PRK15180 412 HYWKRVLL 419 (831)
T ss_pred HHHHHHhc
Confidence 55555443
No 296
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=90.79 E-value=17 Score=35.44 Aligned_cols=121 Identities=8% Similarity=-0.078 Sum_probs=53.1
Q ss_pred HhhcChHHHHHHhhhcCCC------CCchhHHHHHHHHHHhhC-----cHHHHHHHHHHHHHcCCCCchhhHHHHHHHhc
Q 044770 73 IKNHGISQGEKLFCCIPKD------YQNELLYNNLVIACLDKG-----VIKLSLEYMKKMRVLGHSISYLVFNRLIILNS 141 (464)
Q Consensus 73 ~~~g~~~~a~~~~~~~~~~------~~~~~~~~~li~~~~~~~-----~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~ 141 (464)
+...+++.|..+|+..... .-.......+...|.+.. +.+.|+.++...-+.|. |+...+-..+....
T Consensus 260 g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g~-~~a~~~lg~~~~~g 338 (552)
T KOG1550|consen 260 GVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAELGN-PDAQYLLGVLYETG 338 (552)
T ss_pred cccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCCccccHHHHHHHHHHHHhcCC-chHHHHHHHHHHcC
Confidence 3445666666666655330 112223444444444422 44556666665555542 33333322222222
Q ss_pred C-CCCcccHHHHHHHHHhCCCCCChhhHHHHHHHHH--ccCChhHHHHHHHHHHhCC
Q 044770 142 S-PGRRKTIPNILRQMKADKVAPHVSTFHILMKIEA--NDHNIEGLMKVYSDMKRSE 195 (464)
Q Consensus 142 ~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~a~~~~~~m~~~~ 195 (464)
. ..+...|.++|....+.|. +....+-.++.... -..+...|..++.+..+.|
T Consensus 339 ~~~~d~~~A~~yy~~Aa~~G~-~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g 394 (552)
T KOG1550|consen 339 TKERDYRRAFEYYSLAAKAGH-ILAIYRLALCYELGLGVERNLELAFAYYKKAAEKG 394 (552)
T ss_pred CccccHHHHHHHHHHHHHcCC-hHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHcc
Confidence 2 2344556666666655552 22222222211111 2334555555555555554
No 297
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=90.64 E-value=1.5 Score=30.31 Aligned_cols=44 Identities=14% Similarity=0.123 Sum_probs=20.6
Q ss_pred HHHHHHHHHhCCCCCcHhHHHHHHHHHHhcChhhHHHHHHHHHH
Q 044770 184 LMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALE 227 (464)
Q Consensus 184 a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 227 (464)
+.+-++.+....+.|++....+.+++|-+.+++..|.++|+-++
T Consensus 26 ~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK 69 (103)
T cd00923 26 LRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIK 69 (103)
T ss_pred HHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 33334444444444444445555555555555555555544443
No 298
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=90.60 E-value=3.8 Score=28.80 Aligned_cols=41 Identities=7% Similarity=-0.077 Sum_probs=17.6
Q ss_pred HHHHHhccCCCChhhHHHHHHHHHhhcChhhHHHHHHHhcc
Q 044770 223 VEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQE 263 (464)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 263 (464)
+..+......|++.+..+.+++|.+.+++..|.++++.++.
T Consensus 33 lN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~ 73 (108)
T PF02284_consen 33 LNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKD 73 (108)
T ss_dssp HHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 33334444445555555555555555555555555444444
No 299
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=90.21 E-value=3.8 Score=33.10 Aligned_cols=75 Identities=12% Similarity=-0.008 Sum_probs=47.8
Q ss_pred hHHHHHHHHHHhCCCCccHHHHHHHHHHHHhcCChHHHHHHHHHhHHHHhhhhhcCCCCcHHHHHHHHHHHHhcCChhhH
Q 044770 321 DKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNA 400 (464)
Q Consensus 321 ~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A 400 (464)
+.|.+.|-.+...+.--++..... +..|....+.+++++++..++.+. ..+-.+|+..+.+|+..+.+.|+++.|
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~a-LAtyY~krD~~Kt~~ll~~~L~l~----~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQYA-LATYYTKRDPEKTIQLLLRALELS----NPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHH-HHHHHHccCHHHHHHHHHHHHHhc----CCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 567777777776654434443333 334444667777888777776652 233366666777888888887777766
No 300
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=90.08 E-value=0.69 Score=24.80 Aligned_cols=26 Identities=15% Similarity=0.169 Sum_probs=12.2
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHh
Q 044770 307 YNSVISVYCKNGFIDKASGLLKEMSM 332 (464)
Q Consensus 307 ~~~li~~~~~~~~~~~a~~~~~~m~~ 332 (464)
|..+..+|...|++++|+..|++.++
T Consensus 4 ~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 4 YYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 44444444555555555555544444
No 301
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=90.08 E-value=6.9 Score=29.73 Aligned_cols=25 Identities=8% Similarity=-0.040 Sum_probs=12.6
Q ss_pred HHHHHhhccCChHHHHHHHHHHHhc
Q 044770 274 LAIEAFGRIAQVSRAEELWLEMQSV 298 (464)
Q Consensus 274 ~l~~~~~~~g~~~~a~~~~~~~~~~ 298 (464)
.++.+|.+.+++++|...+++..+.
T Consensus 52 ~l~yayy~~~~y~~A~a~~~rFirL 76 (142)
T PF13512_consen 52 DLAYAYYKQGDYEEAIAAYDRFIRL 76 (142)
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHh
Confidence 4444555555555555555555443
No 302
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=89.85 E-value=22 Score=35.21 Aligned_cols=49 Identities=16% Similarity=0.089 Sum_probs=33.1
Q ss_pred ChhchHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCCchhHHHHHHHHHhh
Q 044770 25 HRGEIFHSINRLRKLQLNKRALEVMEWVIRERPYRPKELDYSYLLEFTIKN 75 (464)
Q Consensus 25 ~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 75 (464)
+......++--|.+.|++++|.++.....+ .+......+...+..+...
T Consensus 110 ~~~p~Wa~Iyy~LR~G~~~~A~~~~~~~~~--~~~~~~~~f~~~l~~~~~s 158 (613)
T PF04097_consen 110 NGDPIWALIYYCLRCGDYDEALEVANENRN--QFQKIERSFPTYLKAYASS 158 (613)
T ss_dssp TTEEHHHHHHHHHTTT-HHHHHHHHHHTGG--GS-TTTTHHHHHHHHCTTT
T ss_pred CCCccHHHHHHHHhcCCHHHHHHHHHHhhh--hhcchhHHHHHHHHHHHhC
Confidence 555677788888888999988888855543 2345556677777777654
No 303
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=89.55 E-value=9.6 Score=30.64 Aligned_cols=126 Identities=10% Similarity=0.088 Sum_probs=73.9
Q ss_pred hchHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCCchhH-----HHHHHHHHhhcChHHHHHHhhhcCCCCCch----hH
Q 044770 27 GEIFHSINRLRKLQLNKRALEVMEWVIRERPYRPKELDY-----SYLLEFTIKNHGISQGEKLFCCIPKDYQNE----LL 97 (464)
Q Consensus 27 ~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~-----~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~----~~ 97 (464)
..|..++.... .+.+ +.....+.+...+| ..+| -.+...+..++++++|..-++.....+.|. .+
T Consensus 55 ~~Y~~~i~~~~-ak~~-~~~~~~ekf~~~n~----~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~ 128 (207)
T COG2976 55 AQYQNAIKAVQ-AKKP-KSIAAAEKFVQANG----KTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALA 128 (207)
T ss_pred HHHHHHHHHHh-cCCc-hhHHHHHHHHhhcc----ccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHH
Confidence 34555555543 3333 44455555554321 2222 223456777888888888887665442221 22
Q ss_pred HHHHHHHHHhhCcHHHHHHHHHHHHHcCCCCchhhHHHHHHHhcCCCCcccHHHHHHHHHhCC
Q 044770 98 YNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADK 160 (464)
Q Consensus 98 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 160 (464)
--.|.+.....|.+++|+..++.....+.. ......-.+.+...|+-++|..-|...++.+
T Consensus 129 ~lRLArvq~q~~k~D~AL~~L~t~~~~~w~--~~~~elrGDill~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 129 ALRLARVQLQQKKADAALKTLDTIKEESWA--AIVAELRGDILLAKGDKQEARAAYEKALESD 189 (207)
T ss_pred HHHHHHHHHHhhhHHHHHHHHhccccccHH--HHHHHHhhhHHHHcCchHHHHHHHHHHHHcc
Confidence 334556677788888888888776654422 2223344566778888888888888887764
No 304
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.52 E-value=9.2 Score=33.22 Aligned_cols=103 Identities=14% Similarity=0.180 Sum_probs=55.2
Q ss_pred CCCCchhhHHHHHHHhcCCCCcccHHHHHHHHHhC---CCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCcHh
Q 044770 125 GHSISYLVFNRLIILNSSPGRRKTIPNILRQMKAD---KVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEV 201 (464)
Q Consensus 125 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~ 201 (464)
|.+....+...++..-....+++.+...+-.+... ...|+...+ +.++.+ -.-++++++.++..=.+.|+-||..
T Consensus 59 g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~-~~irll-lky~pq~~i~~l~npIqYGiF~dqf 136 (418)
T KOG4570|consen 59 GLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIH-TWIRLL-LKYDPQKAIYTLVNPIQYGIFPDQF 136 (418)
T ss_pred CCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHH-HHHHHH-HccChHHHHHHHhCcchhccccchh
Confidence 44444455555555555555666666665555432 111222222 122222 2335556666666666667777777
Q ss_pred HHHHHHHHHHhcChhhHHHHHHHHHHhc
Q 044770 202 SYCILATAHAVARLYTVAETYVEALEKS 229 (464)
Q Consensus 202 ~~~~li~~~~~~~~~~~a~~~~~~~~~~ 229 (464)
+++.+|..+.+.+++.+|.++.-.|...
T Consensus 137 ~~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 137 TFCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred hHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 7777777777777776666665555443
No 305
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=89.30 E-value=1.1 Score=25.32 Aligned_cols=29 Identities=17% Similarity=0.245 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHHHHH
Q 044770 381 LETTLSIIEIFAEKGDVGNAENLFEELKK 409 (464)
Q Consensus 381 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 409 (464)
..+++.|...|...|++++|..++++..+
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 35678999999999999999999998875
No 306
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=89.26 E-value=8.2 Score=29.47 Aligned_cols=51 Identities=12% Similarity=-0.018 Sum_probs=24.1
Q ss_pred hcChhhHHHHHHHhccCCCCchhhHHHHHHHhhccCChHHHHHHHHHHHhc
Q 044770 248 LAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSV 298 (464)
Q Consensus 248 ~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 298 (464)
.++.+++..+++.+.--.+.....-..-...+...|++++|.++|+.+.+.
T Consensus 23 ~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~ 73 (153)
T TIGR02561 23 SADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSS 73 (153)
T ss_pred cCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhcc
Confidence 344444444444444322222211222233345566677777777666653
No 307
>PRK11906 transcriptional regulator; Provisional
Probab=89.01 E-value=19 Score=33.40 Aligned_cols=78 Identities=14% Similarity=0.058 Sum_probs=40.4
Q ss_pred hHHHHHHHhccCCCCchhhHHHHHHHhhccCChHHHHHHHHHHHhccccCC-hhhHHHHHHHHHhcCChhHHHHHHHHHH
Q 044770 253 DLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKA-TEQYNSVISVYCKNGFIDKASGLLKEMS 331 (464)
Q Consensus 253 ~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~ 331 (464)
+|.+.-+...+..+.++.....+..++.-.++++.|...|++....+ || ..+|......+.-.|+.++|.+.+++..
T Consensus 322 ~a~~~A~rAveld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~--Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~al 399 (458)
T PRK11906 322 KALELLDYVSDITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHS--TDIASLYYYRALVHFHNEKIEEARICIDKSL 399 (458)
T ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcC--CccHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 33444444444455555445555555555555666666666665532 32 2334444444455566666666666654
Q ss_pred h
Q 044770 332 M 332 (464)
Q Consensus 332 ~ 332 (464)
+
T Consensus 400 r 400 (458)
T PRK11906 400 Q 400 (458)
T ss_pred c
Confidence 4
No 308
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=88.33 E-value=51 Score=37.46 Aligned_cols=149 Identities=7% Similarity=-0.030 Sum_probs=83.8
Q ss_pred HHHHHHhhcChHHHHHHhhhcCCC----CCchhHHHHHHHHHHhhCcHHHHHHHHHHHHHcCCCCchhhHHHHHHHhcCC
Q 044770 68 LLEFTIKNHGISQGEKLFCCIPKD----YQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSP 143 (464)
Q Consensus 68 l~~~~~~~g~~~~a~~~~~~~~~~----~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~ 143 (464)
+..+-.+++.+.+|...++.-... ......|..+...|..-++++....+...-.. +...+.. |-.....
T Consensus 1389 La~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a-----~~sl~~q-il~~e~~ 1462 (2382)
T KOG0890|consen 1389 LARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFA-----DPSLYQQ-ILEHEAS 1462 (2382)
T ss_pred HHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhc-----CccHHHH-HHHHHhh
Confidence 334555777788888888773222 11223444455578888888777766653111 2222333 3345667
Q ss_pred CCcccHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCcHhHHHH-HHHHHHhcChhhHHHHH
Q 044770 144 GRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCI-LATAHAVARLYTVAETY 222 (464)
Q Consensus 144 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~-li~~~~~~~~~~~a~~~ 222 (464)
|++..|...|+.+.+.+ ++...+++-++......|.++.+....+-...+ ..+....|+. =+.+--+.++++.....
T Consensus 1463 g~~~da~~Cye~~~q~~-p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~-~se~~~~~~s~~~eaaW~l~qwD~~e~~ 1540 (2382)
T KOG0890|consen 1463 GNWADAAACYERLIQKD-PDKEKHHSGVLKSMLAIQHLSTEILHLDGLIIN-RSEEVDELNSLGVEAAWRLSQWDLLESY 1540 (2382)
T ss_pred ccHHHHHHHHHHhhcCC-CccccchhhHHHhhhcccchhHHHhhhcchhhc-cCHHHHHHHHHHHHHHhhhcchhhhhhh
Confidence 88888888888888765 444667777777666777777766655544332 1222222222 22233455666655554
Q ss_pred HH
Q 044770 223 VE 224 (464)
Q Consensus 223 ~~ 224 (464)
+.
T Consensus 1541 l~ 1542 (2382)
T KOG0890|consen 1541 LS 1542 (2382)
T ss_pred hh
Confidence 43
No 309
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=88.31 E-value=28 Score=34.49 Aligned_cols=71 Identities=13% Similarity=0.115 Sum_probs=39.5
Q ss_pred HhcCChHHHHHHHHHhHHHHhhhhhcCCCCcHHHHHHHHHH--HHhcCChhhHHHHHH--------HHHHcCCCCcHHHH
Q 044770 350 FKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEI--FAEKGDVGNAENLFE--------ELKKANYTKYTFVY 419 (464)
Q Consensus 350 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~--~~~~g~~~~A~~~~~--------~m~~~~~~p~~~~~ 419 (464)
+-.+++..|...++.+.+....... ........+...+.| +...|+.+.|...|. .....+..++..++
T Consensus 372 ~~~~~~~~a~~~l~~~~~~~~~~~~-~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~~~~~~~~~~~El~il 450 (608)
T PF10345_consen 372 FIRGDWSKATQELEFMRQLCQRSPS-KLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRFLLCEAANRKSKFRELYIL 450 (608)
T ss_pred HHCcCHHHHHHHHHHHHHHHhcCcc-chhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhhhhhhccCCcchHHHHH
Confidence 3457888899999988543211000 011122222233333 345799999999997 45555655555544
Q ss_pred HH
Q 044770 420 NT 421 (464)
Q Consensus 420 ~~ 421 (464)
..
T Consensus 451 a~ 452 (608)
T PF10345_consen 451 AA 452 (608)
T ss_pred HH
Confidence 33
No 310
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=88.23 E-value=1.8 Score=23.11 Aligned_cols=30 Identities=13% Similarity=0.234 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHHHHcC
Q 044770 382 ETTLSIIEIFAEKGDVGNAENLFEELKKAN 411 (464)
Q Consensus 382 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 411 (464)
.+|..+...|...|++++|...|++..+..
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~ 31 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELD 31 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHC
Confidence 467788999999999999999999998753
No 311
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.84 E-value=15 Score=30.61 Aligned_cols=21 Identities=10% Similarity=0.094 Sum_probs=14.8
Q ss_pred HhcCChhHHHHHHHHHHhCCC
Q 044770 315 CKNGFIDKASGLLKEMSMNGC 335 (464)
Q Consensus 315 ~~~~~~~~a~~~~~~m~~~g~ 335 (464)
+..+++.+|+.+|++.....+
T Consensus 165 a~leqY~~Ai~iyeqva~~s~ 185 (288)
T KOG1586|consen 165 AQLEQYSKAIDIYEQVARSSL 185 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHhc
Confidence 456778888888887766443
No 312
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=87.73 E-value=2 Score=37.47 Aligned_cols=112 Identities=11% Similarity=-0.048 Sum_probs=66.0
Q ss_pred HHHhhccCChHHHHHHHHHHHhccccCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCccHHHHHHHHHHHHhcCCh
Q 044770 276 IEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLV 355 (464)
Q Consensus 276 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~ 355 (464)
..-|.+.|.+++|..+|...... .+-|++++..-..+|.+..++..|..=....+..+ ..-...|..-+.+-...|..
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia~-~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd-~~Y~KAYSRR~~AR~~Lg~~ 181 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIAV-YPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALD-KLYVKAYSRRMQARESLGNN 181 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhcc-CCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhh-HHHHHHHHHHHHHHHHHhhH
Confidence 45688999999999999887762 22388888888889999888887766655554421 00112333333333334444
Q ss_pred HHHHHHHHHhHHHHhhhhhcCCCCcHHHHHHHHHHHHhcCChhhHH
Q 044770 356 EEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAE 401 (464)
Q Consensus 356 ~~a~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 401 (464)
.+|..-++.+ ..+.|+. +-|=..+.+...+.++.
T Consensus 182 ~EAKkD~E~v---------L~LEP~~---~ELkK~~a~i~Sl~E~~ 215 (536)
T KOG4648|consen 182 MEAKKDCETV---------LALEPKN---IELKKSLARINSLRERK 215 (536)
T ss_pred HHHHHhHHHH---------HhhCccc---HHHHHHHHHhcchHhhh
Confidence 5554444444 3455652 24455555555544443
No 313
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=87.44 E-value=32 Score=34.13 Aligned_cols=395 Identities=11% Similarity=0.043 Sum_probs=194.0
Q ss_pred hHHHHHHHH-hhcchHHHHHHHHHHHHcCCCCCCchh-----HHHHHHHHHhhcChHHHHHHhhhcCCC--C----Cchh
Q 044770 29 IFHSINRLR-KLQLNKRALEVMEWVIRERPYRPKELD-----YSYLLEFTIKNHGISQGEKLFCCIPKD--Y----QNEL 96 (464)
Q Consensus 29 ~~~~l~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~-----~~~l~~~~~~~g~~~~a~~~~~~~~~~--~----~~~~ 96 (464)
...+...+. .-.+++.|...+++...... +++... ...++..+.+.+... |...+++..+. . +-..
T Consensus 62 ~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~-~~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~ 139 (608)
T PF10345_consen 62 RLRLASILLEETENLDLAETYLEKAILLCE-RHRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWYY 139 (608)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHHH
Confidence 444666666 56789999999998765332 233221 234455666665555 88887775544 1 1122
Q ss_pred HHHHH-HHHHHhhCcHHHHHHHHHHHHHcC---CCCchhhHHHHHHHh--cCCCCcccHHHHHHHHHhCC---------C
Q 044770 97 LYNNL-VIACLDKGVIKLSLEYMKKMRVLG---HSISYLVFNRLIILN--SSPGRRKTIPNILRQMKADK---------V 161 (464)
Q Consensus 97 ~~~~l-i~~~~~~~~~~~a~~~~~~m~~~~---~~~~~~~~~~l~~~~--~~~~~~~~a~~~~~~~~~~~---------~ 161 (464)
.|.-+ +..+...+++..|++.++.+.... -.|-..++..++.+. .+.+..+++.+.++++.... -
T Consensus 140 ~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~ 219 (608)
T PF10345_consen 140 AFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVH 219 (608)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCC
Confidence 33333 333333479999999998887632 233444555555543 35566777888777774321 1
Q ss_pred CCChhhHHHHHHHHH--ccCChhHHHHHHHHHHh-------CC----------CC-------------CcHhH-------
Q 044770 162 APHVSTFHILMKIEA--NDHNIEGLMKVYSDMKR-------SE----------VE-------------PNEVS------- 202 (464)
Q Consensus 162 ~~~~~~~~~l~~~~~--~~~~~~~a~~~~~~m~~-------~~----------~~-------------p~~~~------- 202 (464)
.|-..+|..+++.++ ..|+++.+...++++.+ .. ++ |....
T Consensus 220 ~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq~~~~~~~~~~~w~~~~~d~~i~l~~~~~~~~~~~~~~~f~wl~~~~l 299 (608)
T PF10345_consen 220 IPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQQFLDEIKKSPSWPSWDEDGSIPLNIGEGSSNSGGTPLVFSWLPKEEL 299 (608)
T ss_pred cHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCccCCCcCCCeeEEeecccccccCCCceeEEeecCHHHH
Confidence 345667777776654 46776676666555432 10 00 11111
Q ss_pred --HHHHHHH--HHhcChhhHHHHHHHHHHhc--------cCCCCh--------hhHHHHHH---------HHHhhcChhh
Q 044770 203 --YCILATA--HAVARLYTVAETYVEALEKS--------MTGNNW--------STLDVLII---------LYGYLAKGKD 253 (464)
Q Consensus 203 --~~~li~~--~~~~~~~~~a~~~~~~~~~~--------~~~~~~--------~~~~~l~~---------~~~~~~~~~~ 253 (464)
...++.+ .+..+..++|.+++++..+. ...+.. ..+...+. ..+-.+++..
T Consensus 300 ~~L~y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~~~~~~~~~~sl~~~~~~~~~~~~l~~~~~~y~~~~~~~~~~~~~ 379 (608)
T PF10345_consen 300 YALVYFLSGLHNLYKGSMDKSEKFLEKALKQIEKLKIKSPSAPSESLSEASERIQWLRYLQCYLLFYQIWCNFIRGDWSK 379 (608)
T ss_pred HHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccCCCCCCcCHHHHHHhHHHHHHHHHHHHHHHHHHHHHCcCHHH
Confidence 1112222 22344444565555543221 111111 11111111 2244577888
Q ss_pred HHHHHHHhccC----CC---CchhhHHHHH--HHhhccCChHHHHHHHH--------HHHhccccCChhhHHHH--HHHH
Q 044770 254 LERIWATVQEL----PN---VRSKSYVLAI--EAFGRIAQVSRAEELWL--------EMQSVKQLKATEQYNSV--ISVY 314 (464)
Q Consensus 254 a~~~~~~~~~~----~~---~~~~~~~~l~--~~~~~~g~~~~a~~~~~--------~~~~~~~~~~~~~~~~l--i~~~ 314 (464)
+.+..+.+... +. .....+..++ -.+...|+.+.|...|. .....+...+...+..+ +..+
T Consensus 380 a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~~~~~~~~~~~El~ila~LNl~~I~ 459 (608)
T PF10345_consen 380 ATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRFLLCEAANRKSKFRELYILAALNLAIIL 459 (608)
T ss_pred HHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhhhhhhccCCcchHHHHHHHHHHHHHh
Confidence 88888877762 11 1111222222 33345799999999997 34443444444443332 1122
Q ss_pred HhcC--ChhH--HHHHHHHHHhC-CCCc--cHHHHH-HHHHHHHhc--CChHHHHHHHHHhHHHHhhhhhcCCC-CcHHH
Q 044770 315 CKNG--FIDK--ASGLLKEMSMN-GCKP--NAITYR-HLALGCFKS--NLVEEGFKALELGMKLITTKKVRSST-PWLET 383 (464)
Q Consensus 315 ~~~~--~~~~--a~~~~~~m~~~-g~~p--~~~~~~-~ll~~~~~~--~~~~~a~~~~~~~~~~~~~~~~~~~~-p~~~~ 383 (464)
...+ ..++ +.++++.+... .-.| +..+.. .++.++... -...++...+...++... ...+.. -...+
T Consensus 460 ~~~~~~~~~~~~~~~l~~~i~p~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ne~k~~l~~~L~~~~--~~~~n~~l~~~~ 537 (608)
T PF10345_consen 460 QYESSRDDSESELNELLEQIEPLCSNSPNSYNRTAYCLVLATYNTFEPFSSNEAKRHLQEALKMAN--NKLGNSQLLAIL 537 (608)
T ss_pred HhhcccchhhhHHHHHHHhcCccccCCccHHHHHHHHHHHHHHhhCCccccHHHHHHHHHHHHHHH--HhhccchHHHHH
Confidence 2222 2223 66666665542 1122 223333 333333322 223477777777765431 011111 11222
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHHcCCC-C--cHHHHHHHHHHHHH
Q 044770 384 TLSIIEIFAEKGDVGNAENLFEELKKANYT-K--YTFVYNTLIKAYVK 428 (464)
Q Consensus 384 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-p--~~~~~~~li~~~~~ 428 (464)
++.+...+. .|+..+..+.........-+ | ....|..+..+...
T Consensus 538 L~lm~~~lf-~~~~~e~~~~s~~a~~~A~k~~d~~~~LW~~v~~~~l~ 584 (608)
T PF10345_consen 538 LNLMGHRLF-EGDVGEQAKKSARAFQLAKKSSDYSDQLWHLVASGMLA 584 (608)
T ss_pred HHHHHHHHH-cCCHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHH
Confidence 333333333 68888866665543322111 2 44578555554443
No 314
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=87.21 E-value=0.6 Score=25.25 Aligned_cols=20 Identities=30% Similarity=0.595 Sum_probs=8.0
Q ss_pred hhhHHHHHHHHHhcCChhHH
Q 044770 304 TEQYNSVISVYCKNGFIDKA 323 (464)
Q Consensus 304 ~~~~~~li~~~~~~~~~~~a 323 (464)
...|+.+...|...|++++|
T Consensus 13 ~~a~~nla~~~~~~g~~~~A 32 (34)
T PF13431_consen 13 AEAYNNLANLYLNQGDYEEA 32 (34)
T ss_pred HHHHHHHHHHHHHCcCHHhh
Confidence 33344444444444444333
No 315
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=87.20 E-value=0.69 Score=25.03 Aligned_cols=21 Identities=14% Similarity=0.240 Sum_probs=9.8
Q ss_pred ChhhHHHHHHHHHccCChhHH
Q 044770 164 HVSTFHILMKIEANDHNIEGL 184 (464)
Q Consensus 164 ~~~~~~~l~~~~~~~~~~~~a 184 (464)
+...|+.+...|...|++++|
T Consensus 12 n~~a~~nla~~~~~~g~~~~A 32 (34)
T PF13431_consen 12 NAEAYNNLANLYLNQGDYEEA 32 (34)
T ss_pred CHHHHHHHHHHHHHCcCHHhh
Confidence 344444444444444444444
No 316
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.97 E-value=8.8 Score=36.55 Aligned_cols=98 Identities=15% Similarity=0.138 Sum_probs=46.7
Q ss_pred hhCcHHHHHHHHHHHHHcCCCCchhhHHHHHHHhcCCCCcccHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhHHHH
Q 044770 107 DKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMK 186 (464)
Q Consensus 107 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 186 (464)
+.|+++.|.++..+.. +..-|..|.++....+++..|.+.|....+ |..|+-.+...|+-+....
T Consensus 649 ~lgrl~iA~~la~e~~------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~ 713 (794)
T KOG0276|consen 649 KLGRLDIAFDLAVEAN------SEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAV 713 (794)
T ss_pred hcCcHHHHHHHHHhhc------chHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHH
Confidence 4455555555443321 334455666666666666666666555443 2234444444555444444
Q ss_pred HHHHHHhCCCCCcHhHHHHHHHHHHhcChhhHHHHHHHH
Q 044770 187 VYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEA 225 (464)
Q Consensus 187 ~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~ 225 (464)
+-....+.|.. | ....+|...|+++++.+++..
T Consensus 714 la~~~~~~g~~-N-----~AF~~~~l~g~~~~C~~lLi~ 746 (794)
T KOG0276|consen 714 LASLAKKQGKN-N-----LAFLAYFLSGDYEECLELLIS 746 (794)
T ss_pred HHHHHHhhccc-c-----hHHHHHHHcCCHHHHHHHHHh
Confidence 44444444321 1 112234445555555555443
No 317
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=86.90 E-value=24 Score=32.00 Aligned_cols=53 Identities=15% Similarity=0.219 Sum_probs=33.5
Q ss_pred HHHhcCCCCcccHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHh
Q 044770 137 IILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKR 193 (464)
Q Consensus 137 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 193 (464)
..+..+.|+|+...+........ .++...|.++... +.++++++....+....
T Consensus 5 ~eaaWrl~~Wd~l~~~~~~~~~~--~~~~~~~~al~~l--~~~~~~~~~~~i~~~r~ 57 (352)
T PF02259_consen 5 AEAAWRLGDWDLLEEYLSQSNED--SPEYSFYRALLAL--RQGDYDEAKKYIEKARQ 57 (352)
T ss_pred HHHHHhcCChhhHHHHHhhccCC--ChhHHHHHHHHHH--hCccHHHHHHHHHHHHH
Confidence 45667788888866555554432 2355555555433 77888888887777654
No 318
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=86.82 E-value=1.5 Score=23.30 Aligned_cols=23 Identities=13% Similarity=0.141 Sum_probs=9.3
Q ss_pred HHHHHHHhcCChhHHHHHHHHHH
Q 044770 309 SVISVYCKNGFIDKASGLLKEMS 331 (464)
Q Consensus 309 ~li~~~~~~~~~~~a~~~~~~m~ 331 (464)
.+...+...|++++|++.|++..
T Consensus 6 ~lg~~~~~~~~~~~A~~~~~~al 28 (34)
T PF07719_consen 6 YLGQAYYQLGNYEEAIEYFEKAL 28 (34)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHH
Confidence 33344444444444444444443
No 319
>PHA02875 ankyrin repeat protein; Provisional
Probab=86.80 E-value=27 Score=32.59 Aligned_cols=13 Identities=8% Similarity=0.013 Sum_probs=5.9
Q ss_pred hhcChHHHHHHhh
Q 044770 74 KNHGISQGEKLFC 86 (464)
Q Consensus 74 ~~g~~~~a~~~~~ 86 (464)
..|+.+-+..+++
T Consensus 11 ~~g~~~iv~~Ll~ 23 (413)
T PHA02875 11 LFGELDIARRLLD 23 (413)
T ss_pred HhCCHHHHHHHHH
Confidence 3444444444444
No 320
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=86.44 E-value=25 Score=31.83 Aligned_cols=67 Identities=10% Similarity=-0.019 Sum_probs=47.4
Q ss_pred CCChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCC---cHhHHHHHHHHHHhcChhhHHHHHHHHHHh
Q 044770 162 APHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEP---NEVSYCILATAHAVARLYTVAETYVEALEK 228 (464)
Q Consensus 162 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p---~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 228 (464)
.....+|..+.+.+.+.|.++.|...+..+...+... ++...-.-++..-..|+..+|+..++....
T Consensus 143 ~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 143 EELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred hHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3445678888888999999999999998887643211 233334445556677888888888887766
No 321
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=86.41 E-value=2.6 Score=22.34 Aligned_cols=29 Identities=17% Similarity=0.202 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHHHHc
Q 044770 382 ETTLSIIEIFAEKGDVGNAENLFEELKKA 410 (464)
Q Consensus 382 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 410 (464)
..+..+...+...|++++|.+.|++..+.
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l 30 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 35667888999999999999999998875
No 322
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=85.83 E-value=0.54 Score=36.12 Aligned_cols=84 Identities=12% Similarity=0.094 Sum_probs=47.5
Q ss_pred HHHHhcCCCCcccHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCcHhHHHHHHHHHHhcCh
Q 044770 136 LIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARL 215 (464)
Q Consensus 136 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~ 215 (464)
++..+.+.+.++....+++.+...+...+....+.++..|++.+..+...++++.. +..-...++..|.+.|.
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~-------~~yd~~~~~~~c~~~~l 85 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTS-------NNYDLDKALRLCEKHGL 85 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSS-------SSS-CTHHHHHHHTTTS
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccc-------cccCHHHHHHHHHhcch
Confidence 45556666666777777777766554455666677777777776666666665511 11222345555556666
Q ss_pred hhHHHHHHHHH
Q 044770 216 YTVAETYVEAL 226 (464)
Q Consensus 216 ~~~a~~~~~~~ 226 (464)
++++.-++.++
T Consensus 86 ~~~a~~Ly~~~ 96 (143)
T PF00637_consen 86 YEEAVYLYSKL 96 (143)
T ss_dssp HHHHHHHHHCC
T ss_pred HHHHHHHHHHc
Confidence 66655555443
No 323
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=85.69 E-value=2.3 Score=23.84 Aligned_cols=28 Identities=25% Similarity=0.215 Sum_probs=19.7
Q ss_pred hHHHHHHHHHHhhCcHHHHHHHHHHHHH
Q 044770 96 LLYNNLVIACLDKGVIKLSLEYMKKMRV 123 (464)
Q Consensus 96 ~~~~~li~~~~~~~~~~~a~~~~~~m~~ 123 (464)
.+++.+...|...|++++|..++++...
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 4567777777777888888777777654
No 324
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=85.68 E-value=29 Score=31.92 Aligned_cols=78 Identities=14% Similarity=0.059 Sum_probs=62.2
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHhHHHHhhhhhcCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCcHHHHHH
Q 044770 342 YRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNT 421 (464)
Q Consensus 342 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ 421 (464)
...|+.-|...|+..+|.+...+. .-.+-.....+.+++.+.-+.|+-...+.++++.-..| .+|-|.
T Consensus 512 I~~LLeEY~~~GdisEA~~CikeL--------gmPfFhHEvVkkAlVm~mEkk~d~t~~ldLLk~cf~sg----lIT~nQ 579 (645)
T KOG0403|consen 512 IDMLLEEYELSGDISEACHCIKEL--------GMPFFHHEVVKKALVMVMEKKGDSTMILDLLKECFKSG----LITTNQ 579 (645)
T ss_pred HHHHHHHHHhccchHHHHHHHHHh--------CCCcchHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcC----ceeHHH
Confidence 567888899999999999988876 22333356778899999999999888888888877755 568888
Q ss_pred HHHHHHHcCC
Q 044770 422 LIKAYVKAKI 431 (464)
Q Consensus 422 li~~~~~~g~ 431 (464)
|-++|.+-.+
T Consensus 580 MtkGf~RV~d 589 (645)
T KOG0403|consen 580 MTKGFERVYD 589 (645)
T ss_pred hhhhhhhhhc
Confidence 9999988764
No 325
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=84.70 E-value=2.4 Score=22.24 Aligned_cols=28 Identities=18% Similarity=0.241 Sum_probs=20.4
Q ss_pred hHHHHHHHHhhcchHHHHHHHHHHHHcC
Q 044770 29 IFHSINRLRKLQLNKRALEVMEWVIRER 56 (464)
Q Consensus 29 ~~~~l~~~~~~~~~~~A~~~~~~~~~~~ 56 (464)
+..+...+.+.|++++|.+.|+.+++..
T Consensus 3 ~~~~a~~~~~~g~~~~A~~~~~~~~~~~ 30 (33)
T PF13174_consen 3 LYRLARCYYKLGDYDEAIEYFQRLIKRY 30 (33)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 4456667777788888888888887753
No 326
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=84.34 E-value=6.7 Score=31.74 Aligned_cols=73 Identities=11% Similarity=-0.030 Sum_probs=51.1
Q ss_pred ccHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhC---CCCCcHhHHHHHHHHHHhcChhhHHH
Q 044770 147 KTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRS---EVEPNEVSYCILATAHAVARLYTVAE 220 (464)
Q Consensus 147 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~---~~~p~~~~~~~li~~~~~~~~~~~a~ 220 (464)
+.|.+.|-.+...+.--++.....|...|. ..+.+++..++....+. +-.+|+..+..|+..+.+.|+++.|-
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 567777777777665555555555665555 56778888877776543 23667888888888888888887764
No 327
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=84.19 E-value=40 Score=32.30 Aligned_cols=382 Identities=9% Similarity=0.006 Sum_probs=215.4
Q ss_pred CCchhHHHHHHHHHhhcChHHHHHHhhhcCCCCCchh-HHHHHHHHHHhhCcHHHHHHHHHHHHHcCCCCchhhHHHHHH
Q 044770 60 PKELDYSYLLEFTIKNHGISQGEKLFCCIPKDYQNEL-LYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLII 138 (464)
Q Consensus 60 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~ 138 (464)
.+...|..++.---...+.+.+..+++.+....|... -|-....-=.+.|..+.+.++|++-... ++-+...|...+.
T Consensus 43 ~~f~~wt~li~~~~~~~~~~~~r~~y~~fL~kyPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~a-ip~SvdlW~~Y~~ 121 (577)
T KOG1258|consen 43 LDFDAWTTLIQENDSIEDVDALREVYDIFLSKYPLCYGYWKKFADYEYKLGNAENSVKVFERGVQA-IPLSVDLWLSYLA 121 (577)
T ss_pred hcccchHHHHhccCchhHHHHHHHHHHHHHhhCccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-hhhHHHHHHHHHH
Confidence 3455666777665555566788888888887777654 5677777777889999999999999874 7778888887776
Q ss_pred Hhc-CCCCcccHHHHHHHHHhC-CCC-CChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCcHhHHHHHHHHHH---h
Q 044770 139 LNS-SPGRRKTIPNILRQMKAD-KVA-PHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHA---V 212 (464)
Q Consensus 139 ~~~-~~~~~~~a~~~~~~~~~~-~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~---~ 212 (464)
.+. ..|+.+...+.|+..... |.. .....|...|..-..++++.....+|+...+. ....|+....-|. +
T Consensus 122 f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRilei----P~~~~~~~f~~f~~~l~ 197 (577)
T KOG1258|consen 122 FLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEI----PLHQLNRHFDRFKQLLN 197 (577)
T ss_pred HHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhh----hhhHhHHHHHHHHHHHh
Confidence 654 567777888888888763 322 34567888888888999999999999998863 1222222222221 1
Q ss_pred c------ChhhHHHHHHHHHH--------------------hccCCCChh--hHHHHHHHH-------HhhcChhhHHHH
Q 044770 213 A------RLYTVAETYVEALE--------------------KSMTGNNWS--TLDVLIILY-------GYLAKGKDLERI 257 (464)
Q Consensus 213 ~------~~~~~a~~~~~~~~--------------------~~~~~~~~~--~~~~l~~~~-------~~~~~~~~a~~~ 257 (464)
. ...+++.++-.... ..+.+.+.. ..+.+-..+ ...-........
T Consensus 198 ~~~~~~l~~~d~~~~l~~~~~~~~~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~~~~~~~~~~s~~~~~kr~~ 277 (577)
T KOG1258|consen 198 QNEEKILLSIDELIQLRSDVAERSKITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRIVSIHEKVYQKSEEEEEKRWG 277 (577)
T ss_pred cCChhhhcCHHHHHHHhhhHHhhhhcccccChhHHHHHHHhhccCccchhhHHHHHHHHHHHHHHHHHHhhHhHHHHHHh
Confidence 1 11222222211111 111111100 111111111 111112222222
Q ss_pred HHHhccCC--------CCchhhHHHHHHHhhccCChHHHHHHHHHHHhccccCChhhHHHHHHHHHhcCChhHHHHHHHH
Q 044770 258 WATVQELP--------NVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKE 329 (464)
Q Consensus 258 ~~~~~~~~--------~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 329 (464)
++...+.+ .....+|...++--...|+.+.+.-+|++..-. +..=...|-..+.-....|+.+-|..++..
T Consensus 278 fE~~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~-cA~Y~efWiky~~~m~~~~~~~~~~~~~~~ 356 (577)
T KOG1258|consen 278 FEEGIKRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIP-CALYDEFWIKYARWMESSGDVSLANNVLAR 356 (577)
T ss_pred hhhhccccccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhH-HhhhHHHHHHHHHHHHHcCchhHHHHHHHh
Confidence 33322211 122346777788888899999999999887651 111122344444444445888888887777
Q ss_pred HHhCCCCccHHHHHHHHHH-HHhcCChHHHHHHHHHhHHHHhhhhhcCCCCcHH-HHHHHHHHHHhcCChhhHH---HHH
Q 044770 330 MSMNGCKPNAITYRHLALG-CFKSNLVEEGFKALELGMKLITTKKVRSSTPWLE-TTLSIIEIFAEKGDVGNAE---NLF 404 (464)
Q Consensus 330 m~~~g~~p~~~~~~~ll~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~p~~~-~~~~li~~~~~~g~~~~A~---~~~ 404 (464)
..+--+ |+......+-.. +-..|++..|..+++... ... |+.. .-..-+....+.|..+.+. .++
T Consensus 357 ~~~i~~-k~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~--------~e~-pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~ 426 (577)
T KOG1258|consen 357 ACKIHV-KKTPIIHLLEARFEESNGNFDDAKVILQRIE--------SEY-PGLVEVVLRKINWERRKGNLEDANYKNELY 426 (577)
T ss_pred hhhhcC-CCCcHHHHHHHHHHHhhccHHHHHHHHHHHH--------hhC-CchhhhHHHHHhHHHHhcchhhhhHHHHHH
Confidence 665432 232222222222 344689999999999983 223 5432 2223445566788888887 333
Q ss_pred HHHHHcCCCCcHHHHHHHHHHHHHc-------CCChhHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 044770 405 EELKKANYTKYTFVYNTLIKAYVKA-------KINDPNLLRRMILGGARPDAETYSLLKLAEQ 460 (464)
Q Consensus 405 ~~m~~~~~~p~~~~~~~li~~~~~~-------g~~a~~~~~~m~~~~~~p~~~t~~~L~~~~~ 460 (464)
....... -+..+.+.+.--+.+- ++.|..++.+|.+. ++++..-|..++..+.
T Consensus 427 s~~~~~~--~~~~i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~~-~~~~k~~~~~~~~~~~ 486 (577)
T KOG1258|consen 427 SSIYEGK--ENNGILEKLYVKFARLRYKIREDADLARIILLEANDI-LPDCKVLYLELIRFEL 486 (577)
T ss_pred HHhcccc--cCcchhHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhc-CCccHHHHHHHHHHHH
Confidence 3333221 2223333333333332 22377777777763 3344444455555443
No 328
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=83.88 E-value=0.6 Score=35.84 Aligned_cols=85 Identities=19% Similarity=0.115 Sum_probs=58.1
Q ss_pred HHHHHhhccCChHHHHHHHHHHHhccccCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCccHHHHHHHHHHHHhcC
Q 044770 274 LAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSN 353 (464)
Q Consensus 274 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~ 353 (464)
.++..+.+.+.++....+++.+...+...+....+.++..|++.++.+...++++.. +..-...++..|.+.|
T Consensus 12 ~vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~-------~~yd~~~~~~~c~~~~ 84 (143)
T PF00637_consen 12 EVISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTS-------NNYDLDKALRLCEKHG 84 (143)
T ss_dssp CCHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSS-------SSS-CTHHHHHHHTTT
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccc-------cccCHHHHHHHHHhcc
Confidence 356667777888888888888886555566778888888888887777777777721 1122345667777777
Q ss_pred ChHHHHHHHHHh
Q 044770 354 LVEEGFKALELG 365 (464)
Q Consensus 354 ~~~~a~~~~~~~ 365 (464)
.++++.-++..+
T Consensus 85 l~~~a~~Ly~~~ 96 (143)
T PF00637_consen 85 LYEEAVYLYSKL 96 (143)
T ss_dssp SHHHHHHHHHCC
T ss_pred hHHHHHHHHHHc
Confidence 777777777665
No 329
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=83.41 E-value=2.2 Score=21.28 Aligned_cols=23 Identities=26% Similarity=0.471 Sum_probs=19.2
Q ss_pred HHHHHHHHHhcCChhhHHHHHHH
Q 044770 384 TLSIIEIFAEKGDVGNAENLFEE 406 (464)
Q Consensus 384 ~~~li~~~~~~g~~~~A~~~~~~ 406 (464)
...+...+...|++++|..++++
T Consensus 4 ~~~la~~~~~~G~~~eA~~~l~~ 26 (26)
T PF07721_consen 4 RLALARALLAQGDPDEAERLLRR 26 (26)
T ss_pred HHHHHHHHHHcCCHHHHHHHHhC
Confidence 34678889999999999998863
No 330
>PRK09687 putative lyase; Provisional
Probab=83.41 E-value=30 Score=30.22 Aligned_cols=57 Identities=11% Similarity=-0.104 Sum_probs=27.4
Q ss_pred CChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCccHHHHHHHHHHHHhcCChHHHHHHHHHh
Q 044770 302 KATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELG 365 (464)
Q Consensus 302 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 365 (464)
++...-...+.++.+.|. ..++..+-+..+.+ + .....+.++...|+. +|...+..+
T Consensus 204 ~~~~VR~~A~~aLg~~~~-~~av~~Li~~L~~~---~--~~~~a~~ALg~ig~~-~a~p~L~~l 260 (280)
T PRK09687 204 KNEEIRIEAIIGLALRKD-KRVLSVLIKELKKG---T--VGDLIIEAAGELGDK-TLLPVLDTL 260 (280)
T ss_pred CChHHHHHHHHHHHccCC-hhHHHHHHHHHcCC---c--hHHHHHHHHHhcCCH-hHHHHHHHH
Confidence 344455555566666555 34444444444332 1 123445555555553 455555554
No 331
>PHA02875 ankyrin repeat protein; Provisional
Probab=83.21 E-value=40 Score=31.47 Aligned_cols=72 Identities=11% Similarity=0.040 Sum_probs=35.7
Q ss_pred hhhHHHHhhcCccChhc--hHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCCch--hHHHHHHHHHhhcChHHHHHHhhh
Q 044770 12 SAFQSWMREGFPVHRGE--IFHSINRLRKLQLNKRALEVMEWVIRERPYRPKEL--DYSYLLEFTIKNHGISQGEKLFCC 87 (464)
Q Consensus 12 ~~l~~~~~~g~~~~~~~--~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~a~~~~~~ 87 (464)
++++.+.+.|..++... -...+...+..|+.+-+ +.+.+ .|..|+.. ....-+...+..|+.+.+..+++.
T Consensus 16 ~iv~~Ll~~g~~~n~~~~~g~tpL~~A~~~~~~~~v----~~Ll~-~ga~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~ 90 (413)
T PHA02875 16 DIARRLLDIGINPNFEIYDGISPIKLAMKFRDSEAI----KLLMK-HGAIPDVKYPDIESELHDAVEEGDVKAVEELLDL 90 (413)
T ss_pred HHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHHHH----HHHHh-CCCCccccCCCcccHHHHHHHCCCHHHHHHHHHc
Confidence 45566666666655433 23344455555665433 33333 23333221 122345555667777776666654
Q ss_pred c
Q 044770 88 I 88 (464)
Q Consensus 88 ~ 88 (464)
-
T Consensus 91 ~ 91 (413)
T PHA02875 91 G 91 (413)
T ss_pred C
Confidence 3
No 332
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=83.01 E-value=19 Score=27.57 Aligned_cols=88 Identities=14% Similarity=0.109 Sum_probs=65.6
Q ss_pred hhcCCCCcHHH--HHHHHHHHHhcCChhhHHHHHHHHHHcC---C--CCcHHHHHHHHHHHHHcCC---ChhHHHHHHHh
Q 044770 373 KVRSSTPWLET--TLSIIEIFAEKGDVGNAENLFEELKKAN---Y--TKYTFVYNTLIKAYVKAKI---NDPNLLRRMIL 442 (464)
Q Consensus 373 ~~~~~~p~~~~--~~~li~~~~~~g~~~~A~~~~~~m~~~~---~--~p~~~~~~~li~~~~~~g~---~a~~~~~~m~~ 442 (464)
.+.+..++..+ .|+++.-....+++.-...+++.+.... + ..+..+|++++.+.++..- .+..+|+-|++
T Consensus 29 ~~~~~~~~~k~~fiN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~ 108 (145)
T PF13762_consen 29 QEENASQSTKTIFINCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKK 108 (145)
T ss_pred hhcccChhHHHHHHHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHH
Confidence 33455555533 6788888888888888888888775321 1 1345589999999976653 27899999999
Q ss_pred CCCCCCHHHHHHHHHHHH
Q 044770 443 GGARPDAETYSLLKLAEQ 460 (464)
Q Consensus 443 ~~~~p~~~t~~~L~~~~~ 460 (464)
.+.+++..-|..|+.++.
T Consensus 109 ~~~~~t~~dy~~li~~~l 126 (145)
T PF13762_consen 109 NDIEFTPSDYSCLIKAAL 126 (145)
T ss_pred cCCCCCHHHHHHHHHHHH
Confidence 999999999999988875
No 333
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=82.97 E-value=42 Score=31.62 Aligned_cols=200 Identities=10% Similarity=0.023 Sum_probs=0.0
Q ss_pred ccChhchHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCCchhHHHHHHHHHhhcChHHHHHHhhhcCCCCCchhHHHHHH
Q 044770 23 PVHRGEIFHSINRLRKLQLNKRALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQGEKLFCCIPKDYQNELLYNNLV 102 (464)
Q Consensus 23 ~~~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~li 102 (464)
+.+...+..++..+..+..++-...+...|.. +.-+...|..++..|... ..+.-..+++++.+-.-+......-+
T Consensus 63 ~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~---~~e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfnDvv~~ReL 138 (711)
T COG1747 63 LLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLE---YGESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFNDVVIGREL 138 (711)
T ss_pred cccchHHHHHHHHhccchHHHHHHHHHHHHHH---hcchHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcchhHHHHHHH
Q ss_pred HHHHhhCcHHHHHHHHHHHHHcCCC-CchhhHHHHHHHhcC--CCCcccHHHHHHHHHh-CCCCCChhhHHHHHHHHHcc
Q 044770 103 IACLDKGVIKLSLEYMKKMRVLGHS-ISYLVFNRLIILNSS--PGRRKTIPNILRQMKA-DKVAPHVSTFHILMKIEAND 178 (464)
Q Consensus 103 ~~~~~~~~~~~a~~~~~~m~~~~~~-~~~~~~~~l~~~~~~--~~~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~ 178 (464)
.-+...++-+.+...|.+....=++ .-.....-+-.-+.. ..+.+....+...+.. .|...-...+.-+-.-|...
T Consensus 139 a~~yEkik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~~ 218 (711)
T COG1747 139 ADKYEKIKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELIGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSEN 218 (711)
T ss_pred HHHHHHhchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhccccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhccc
Q ss_pred CChhHHHHHHHHHHhCCCCCcHhHHHHHHHHHHh--------------------cChhhHHHHHHHHHH
Q 044770 179 HNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAV--------------------ARLYTVAETYVEALE 227 (464)
Q Consensus 179 ~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~--------------------~~~~~~a~~~~~~~~ 227 (464)
.++++|++++..+.+.. ..|...-..++.-+-. -.++..+..-|+...
T Consensus 219 eN~~eai~Ilk~il~~d-~k~~~ar~~~i~~lRd~y~~~~~~e~yl~~s~i~~~~rnf~~~l~dFek~m 286 (711)
T COG1747 219 ENWTEAIRILKHILEHD-EKDVWARKEIIENLRDKYRGHSQLEEYLKISNISQSGRNFFEALNDFEKLM 286 (711)
T ss_pred cCHHHHHHHHHHHhhhc-chhhhHHHHHHHHHHHHhccchhHHHHHHhcchhhccccHHHHHHHHHHHh
No 334
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=82.09 E-value=8 Score=31.67 Aligned_cols=21 Identities=14% Similarity=-0.026 Sum_probs=8.7
Q ss_pred HHHHHHHHHhhCcHHHHHHHH
Q 044770 98 YNNLVIACLDKGVIKLSLEYM 118 (464)
Q Consensus 98 ~~~li~~~~~~~~~~~a~~~~ 118 (464)
-..+++.+|-.|++++|+.-+
T Consensus 38 RhflfqLlcvaGdw~kAl~Ql 58 (273)
T COG4455 38 RHFLFQLLCVAGDWEKALAQL 58 (273)
T ss_pred hhHHHHHHhhcchHHHHHHHH
Confidence 333444444444444444333
No 335
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=82.01 E-value=31 Score=29.39 Aligned_cols=233 Identities=14% Similarity=0.120 Sum_probs=125.0
Q ss_pred CCCCCChhhHHHHHHHH-HccCChhHHHHHHHHHHhCCCCCcHhH---HHHHHHHHHhcChhhHHHHHHHHHHhc---cC
Q 044770 159 DKVAPHVSTFHILMKIE-ANDHNIEGLMKVYSDMKRSEVEPNEVS---YCILATAHAVARLYTVAETYVEALEKS---MT 231 (464)
Q Consensus 159 ~~~~~~~~~~~~l~~~~-~~~~~~~~a~~~~~~m~~~~~~p~~~~---~~~li~~~~~~~~~~~a~~~~~~~~~~---~~ 231 (464)
.+-.||+..=|..-..- .+...+++|+.-|++..+......... ...++....+.+++++.+..|.++... .+
T Consensus 20 s~sEpdVDlENQYYnsK~l~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAV 99 (440)
T KOG1464|consen 20 SNSEPDVDLENQYYNSKGLKEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAV 99 (440)
T ss_pred cCCCCCcchHhhhhccccccccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHH
Confidence 34567776544333221 234578888888888876532333333 345667777788888877777776432 11
Q ss_pred CCChhhHHHHHHHHHhhcChhhHHHHHHHhccCCCCchhhHHHHHHHhhccCChHHHHHHHHHHHhc-cccCCh----hh
Q 044770 232 GNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSV-KQLKAT----EQ 306 (464)
Q Consensus 232 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~----~~ 306 (464)
.. ..+..+.|++++.-....+.+.-..+++.-.+. ....+. .|
T Consensus 100 Tr--------------------------------NySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKT 147 (440)
T KOG1464|consen 100 TR--------------------------------NYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKT 147 (440)
T ss_pred hc--------------------------------cccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeec
Confidence 11 111122333333333333333333333322110 000111 12
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCC-----------ccHHHHHHHHHHHHhcCChHHHHHHHHHhHHHHhhhhhc
Q 044770 307 YNSVISVYCKNGFIDKASGLLKEMSMNGCK-----------PNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVR 375 (464)
Q Consensus 307 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~-----------p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 375 (464)
-..+...|...+.+.....+++++....-. .-...|..=|+.|....+-.....++++++ .-.
T Consensus 148 NtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqal------hiK 221 (440)
T KOG1464|consen 148 NTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQAL------HIK 221 (440)
T ss_pred cchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHH------Hhh
Confidence 344566667777777777777777542110 012457777888888888888888998875 223
Q ss_pred CCCCcHHHHHHHHHH-----HHhcCChhhHHH-HHHHHH---HcCCCCcHH--HHHHHHHHHHHcC
Q 044770 376 SSTPWLETTLSIIEI-----FAEKGDVGNAEN-LFEELK---KANYTKYTF--VYNTLIKAYVKAK 430 (464)
Q Consensus 376 ~~~p~~~~~~~li~~-----~~~~g~~~~A~~-~~~~m~---~~~~~p~~~--~~~~li~~~~~~g 430 (464)
..-|.+... .+|+- ..+.|++++|.. +|+... +.|-+.... -|-.|...+.++|
T Consensus 222 SAIPHPlIm-GvIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsGspRRttCLKYLVLANMLmkS~ 286 (440)
T KOG1464|consen 222 SAIPHPLIM-GVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRRTTCLKYLVLANMLMKSG 286 (440)
T ss_pred ccCCchHHH-hHHHHcCCccccccchHHHHHhHHHHHHhcccccCCcchhHHHHHHHHHHHHHHcC
Confidence 444554432 23333 346788888764 344433 445322222 5677778888887
No 336
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=81.76 E-value=3 Score=24.16 Aligned_cols=26 Identities=27% Similarity=0.507 Sum_probs=23.0
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHHcC
Q 044770 386 SIIEIFAEKGDVGNAENLFEELKKAN 411 (464)
Q Consensus 386 ~li~~~~~~g~~~~A~~~~~~m~~~~ 411 (464)
.|..+|...|+.+.|.+++++....|
T Consensus 4 dLA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 4 DLARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHcC
Confidence 47789999999999999999999754
No 337
>PRK09687 putative lyase; Provisional
Probab=81.25 E-value=37 Score=29.70 Aligned_cols=69 Identities=9% Similarity=-0.068 Sum_probs=32.5
Q ss_pred HHHHHHHhhccCChHHHHHHHHHHHhccccCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCccHHHHHHHHHHH
Q 044770 272 YVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGC 349 (464)
Q Consensus 272 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~ 349 (464)
-...+.++.+.|+. .|...+-...+.+ + .....+.++...|.. +|+..+..+.+. .||...-...+.+|
T Consensus 209 R~~A~~aLg~~~~~-~av~~Li~~L~~~---~--~~~~a~~ALg~ig~~-~a~p~L~~l~~~--~~d~~v~~~a~~a~ 277 (280)
T PRK09687 209 RIEAIIGLALRKDK-RVLSVLIKELKKG---T--VGDLIIEAAGELGDK-TLLPVLDTLLYK--FDDNEIITKAIDKL 277 (280)
T ss_pred HHHHHHHHHccCCh-hHHHHHHHHHcCC---c--hHHHHHHHHHhcCCH-hHHHHHHHHHhh--CCChhHHHHHHHHH
Confidence 33444555555542 3333333333321 1 123455666666663 566666666552 23555544445444
No 338
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=80.28 E-value=1.2e+02 Score=34.93 Aligned_cols=315 Identities=10% Similarity=0.001 Sum_probs=167.2
Q ss_pred HHHHHHHhhcchHHHHHHHHHHHHcCCC--CCCchhHHHHHHHHHhhcChHHHHHHhhh-cCCCCCchhHHHHHHHHHHh
Q 044770 31 HSINRLRKLQLNKRALEVMEWVIRERPY--RPKELDYSYLLEFTIKNHGISQGEKLFCC-IPKDYQNELLYNNLVIACLD 107 (464)
Q Consensus 31 ~~l~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~-~~~~~~~~~~~~~li~~~~~ 107 (464)
.+..+-.+.+.+..|+-.++.-.. ... .-....|-.+...|+.-+++|...-+... ... |+ ....|.....
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~-~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a~--~s---l~~qil~~e~ 1461 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRS-TEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFAD--PS---LYQQILEHEA 1461 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhcc-ccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhcC--cc---HHHHHHHHHh
Confidence 344556678889999998888411 100 11223345555599999999988888774 222 22 2234455667
Q ss_pred hCcHHHHHHHHHHHHHcCCCCchhhHHHHHHHhcCCCCcccHHHHHHHHHhCCCCCChhhHHH-HHHHHHccCChhHHHH
Q 044770 108 KGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHI-LMKIEANDHNIEGLMK 186 (464)
Q Consensus 108 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~~a~~ 186 (464)
.|++..|...|+.+.+.+ ++...+++.++......|.++.+....+...... .+....++. =+.+-.+.+++|....
T Consensus 1462 ~g~~~da~~Cye~~~q~~-p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~-se~~~~~~s~~~eaaW~l~qwD~~e~ 1539 (2382)
T KOG0890|consen 1462 SGNWADAAACYERLIQKD-PDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINR-SEEVDELNSLGVEAAWRLSQWDLLES 1539 (2382)
T ss_pred hccHHHHHHHHHHhhcCC-CccccchhhHHHhhhcccchhHHHhhhcchhhcc-CHHHHHHHHHHHHHHhhhcchhhhhh
Confidence 899999999999999864 3347778888887777888888777666554432 344444433 3455577888887776
Q ss_pred HHHHHHhCCCCCcHhHHHHH--HHHHHhc--ChhhHHHHHHHHHHhccCCC---------ChhhHHHHHHHHHhhcChhh
Q 044770 187 VYSDMKRSEVEPNEVSYCIL--ATAHAVA--RLYTVAETYVEALEKSMTGN---------NWSTLDVLIILYGYLAKGKD 253 (464)
Q Consensus 187 ~~~~m~~~~~~p~~~~~~~l--i~~~~~~--~~~~~a~~~~~~~~~~~~~~---------~~~~~~~l~~~~~~~~~~~~ 253 (464)
... . . +..+|... .....+. ++.-.-.+..+.++..-+.| -...|..++..+.-. +
T Consensus 1540 ~l~--~-~----n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kLH~l~----e 1608 (2382)
T KOG0890|consen 1540 YLS--D-R----NIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEGSYVRSYEILMKLHLLL----E 1608 (2382)
T ss_pred hhh--c-c----cccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccchHHHHHHHHHHHHHHH----H
Confidence 665 1 1 33334333 2222222 22211222333332221111 012233333332211 1
Q ss_pred HHHHHHHhccCCCCc-----hhhHHHHHHHhhccCChHHHHHHHHH-HHhccccC-----ChhhHHHHHHHHHhcCChhH
Q 044770 254 LERIWATVQELPNVR-----SKSYVLAIEAFGRIAQVSRAEELWLE-MQSVKQLK-----ATEQYNSVISVYCKNGFIDK 322 (464)
Q Consensus 254 a~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~a~~~~~~-~~~~~~~~-----~~~~~~~li~~~~~~~~~~~ 322 (464)
-....+.+......+ ..-|..-+..-....+..+-.--+++ +......| -..+|-........+|+++.
T Consensus 1609 l~~~~~~l~~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~ 1688 (2382)
T KOG0890|consen 1609 LENSIEELKKVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQR 1688 (2382)
T ss_pred HHHHHHHhhccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHH
Confidence 111111111111111 11122222111111111111111111 11111111 24567777777778999999
Q ss_pred HHHHHHHHHhCCCCccHHHHHHHHHHHHhcCChHHHHHHHHHhHH
Q 044770 323 ASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMK 367 (464)
Q Consensus 323 a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 367 (464)
|...+-+..+.+ .| ..+..........|+...|+.+++..+.
T Consensus 1689 A~nall~A~e~r-~~--~i~~E~AK~lW~~gd~~~Al~~Lq~~l~ 1730 (2382)
T KOG0890|consen 1689 AQNALLNAKESR-LP--EIVLERAKLLWQTGDELNALSVLQEILS 1730 (2382)
T ss_pred HHHHHHhhhhcc-cc--hHHHHHHHHHHhhccHHHHHHHHHHHHH
Confidence 988877777654 22 3445566678889999999999998864
No 339
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=79.93 E-value=6 Score=20.90 Aligned_cols=29 Identities=24% Similarity=0.354 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHHHHc
Q 044770 382 ETTLSIIEIFAEKGDVGNAENLFEELKKA 410 (464)
Q Consensus 382 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 410 (464)
.+|..+...|...|++++|...|++..+.
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~ 30 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 35678888999999999999999988764
No 340
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=79.92 E-value=17 Score=29.95 Aligned_cols=76 Identities=18% Similarity=0.084 Sum_probs=51.4
Q ss_pred HHHHHHHhhccCChHHHHHHHHHHHhccccCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCC--CCccHHHHHHHHHH
Q 044770 272 YVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNG--CKPNAITYRHLALG 348 (464)
Q Consensus 272 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g--~~p~~~~~~~ll~~ 348 (464)
.+..++.+.+.+.+.+++...++-.+.+ +.|..+-..++..||-.|++++|..-++-.-... ..+-..+|..+|.+
T Consensus 4 l~~t~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ 81 (273)
T COG4455 4 LRDTISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC 81 (273)
T ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence 4455667777888888888887776633 3466677778888888888888887666554421 23344566666654
No 341
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=79.29 E-value=21 Score=34.17 Aligned_cols=150 Identities=14% Similarity=0.024 Sum_probs=94.9
Q ss_pred ccCChhHHHHHHHHHHhCCCCCcHhHHHHHHHHHHhcChhhHHHHHHHHHHhccCCCChhhHHHHHHHHHhhcChhhHHH
Q 044770 177 NDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLER 256 (464)
Q Consensus 177 ~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 256 (464)
-.|+++.|..++..+. ...-+.++.-+.+.|..++|+++ .+|+.. -.....+.|+++.|.+
T Consensus 598 mrrd~~~a~~vLp~I~-------k~~rt~va~Fle~~g~~e~AL~~---------s~D~d~---rFelal~lgrl~iA~~ 658 (794)
T KOG0276|consen 598 LRRDLEVADGVLPTIP-------KEIRTKVAHFLESQGMKEQALEL---------STDPDQ---RFELALKLGRLDIAFD 658 (794)
T ss_pred hhccccccccccccCc-------hhhhhhHHhHhhhccchHhhhhc---------CCChhh---hhhhhhhcCcHHHHHH
Confidence 3455555554433322 22334445555566666666543 233221 1223456777777777
Q ss_pred HHHHhccCCCCchhhHHHHHHHhhccCChHHHHHHHHHHHhccccCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCC
Q 044770 257 IWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCK 336 (464)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~ 336 (464)
+..+... ..-|..|.++....|++..|.+.|....+ |..|+-.+...|+-+....+-....+.|..
T Consensus 659 la~e~~s-----~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~~~~~g~~ 724 (794)
T KOG0276|consen 659 LAVEANS-----EVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASLAKKQGKN 724 (794)
T ss_pred HHHhhcc-----hHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHHHHhhccc
Confidence 6555432 23488999999999999999999988776 677788888888877666666666666643
Q ss_pred ccHHHHHHHHHHHHhcCChHHHHHHHHHh
Q 044770 337 PNAITYRHLALGCFKSNLVEEGFKALELG 365 (464)
Q Consensus 337 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 365 (464)
|...-++...|+++++.+++..-
T Consensus 725 ------N~AF~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 725 ------NLAFLAYFLSGDYEECLELLIST 747 (794)
T ss_pred ------chHHHHHHHcCCHHHHHHHHHhc
Confidence 33344567789999998887654
No 342
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=79.10 E-value=68 Score=31.54 Aligned_cols=49 Identities=14% Similarity=0.216 Sum_probs=28.6
Q ss_pred hchHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCCchhHHHHHHHHHhhcChHHHHHHhhhcC
Q 044770 27 GEIFHSINRLRKLQLNKRALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQGEKLFCCIP 89 (464)
Q Consensus 27 ~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 89 (464)
..|-..+..+.-+|.++.|.+++.... ...+. ...+-++.+..+++.|+
T Consensus 149 p~FW~~v~~lvlrG~~~~a~~lL~~~s---~~~~~-----------~~~~~~~~~~~LL~~~P 197 (566)
T PF07575_consen 149 PDFWDYVQRLVLRGLFDQARQLLRLHS---SYQSY-----------SLQSAFEALIQLLSSMP 197 (566)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHH-TTT---TTTTH-----------HHHHHHHHHHHHHTT--
T ss_pred hhHHHHHHHHHHcCCHHHHHHHHHhcc---cccch-----------hHHHHHHHHHHHHHhCC
Confidence 567778888888899999888884332 12221 23334556666777776
No 343
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=79.07 E-value=7.2 Score=20.57 Aligned_cols=27 Identities=30% Similarity=0.266 Sum_probs=19.9
Q ss_pred HHHHHHHHHHhhCcHHHHHHHHHHHHH
Q 044770 97 LYNNLVIACLDKGVIKLSLEYMKKMRV 123 (464)
Q Consensus 97 ~~~~li~~~~~~~~~~~a~~~~~~m~~ 123 (464)
+|..+...|...|++++|...|++..+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 466677777777888888887777665
No 344
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=78.86 E-value=68 Score=31.40 Aligned_cols=178 Identities=12% Similarity=0.015 Sum_probs=105.5
Q ss_pred hHHHHHHhhhcCCCCCchhHHHH----HHHH-HHhhCcHHHHHHHHHHHHH-------cCCCCchhhHHHHHHHhcCCC-
Q 044770 78 ISQGEKLFCCIPKDYQNELLYNN----LVIA-CLDKGVIKLSLEYMKKMRV-------LGHSISYLVFNRLIILNSSPG- 144 (464)
Q Consensus 78 ~~~a~~~~~~~~~~~~~~~~~~~----li~~-~~~~~~~~~a~~~~~~m~~-------~~~~~~~~~~~~l~~~~~~~~- 144 (464)
...|.++++..... -+...-.. ...+ +...++++.|+..|....+ .| +......+..+|.+..
T Consensus 228 ~~~a~~~~~~~a~~-g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~~ 303 (552)
T KOG1550|consen 228 LSEAFKYYREAAKL-GHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGLG 303 (552)
T ss_pred hhHHHHHHHHHHhh-cchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCCC
Confidence 45677777777664 12222111 2223 5567899999999998877 55 3345666777777654
Q ss_pred ----CcccHHHHHHHHHhCCCCCChhhHHHHHHHHHc-cCChhHHHHHHHHHHhCCCCCcHhHHHHHHHHHH--hcChhh
Q 044770 145 ----RRKTIPNILRQMKADKVAPHVSTFHILMKIEAN-DHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHA--VARLYT 217 (464)
Q Consensus 145 ----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~--~~~~~~ 217 (464)
+.+.|..++....+.| .|+....-..+..... ..+...|.++|....+.|.. +..-+-.++.... -..+..
T Consensus 304 ~~~~d~~~A~~~~~~aA~~g-~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~-~A~~~la~~y~~G~gv~r~~~ 381 (552)
T KOG1550|consen 304 VEKIDYEKALKLYTKAAELG-NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHI-LAIYRLALCYELGLGVERNLE 381 (552)
T ss_pred CccccHHHHHHHHHHHHhcC-CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCCh-HHHHHHHHHHHhCCCcCCCHH
Confidence 4556999999888887 5666554333333222 35678999999999888743 2222222222111 335778
Q ss_pred HHHHHHHHHHhccCCCChhhHHHHHHHHHhhcChhhHHHHHHHhcc
Q 044770 218 VAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQE 263 (464)
Q Consensus 218 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 263 (464)
.|..++++.-..| .|....-...+..+.. ++.+.+.-.+..+..
T Consensus 382 ~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~ 425 (552)
T KOG1550|consen 382 LAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAE 425 (552)
T ss_pred HHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHH
Confidence 8999999988887 3332222233334444 555555555544444
No 345
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=78.71 E-value=47 Score=29.45 Aligned_cols=82 Identities=18% Similarity=0.169 Sum_probs=58.6
Q ss_pred HHHHHHhcCChHHHHHHHHHhHHHHhhhhhcCCCCcHHHHH--HHHHHHHhcCChhhHHHHHHHHHH-----cCCCCcHH
Q 044770 345 LALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTL--SIIEIFAEKGDVGNAENLFEELKK-----ANYTKYTF 417 (464)
Q Consensus 345 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~p~~~~~~--~li~~~~~~g~~~~A~~~~~~m~~-----~~~~p~~~ 417 (464)
++...-+.++.++|.++++++.+. ....-.|+...|. .....+...|+..++.+++++..+ .|++|++.
T Consensus 81 ~l~~~~~~~D~~~al~~Le~i~~~----~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~~~v~~~Vh 156 (380)
T KOG2908|consen 81 LLVVSEQISDKDEALEFLEKIIEK----LKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKSMLDSLDGVTSNVH 156 (380)
T ss_pred HHHHHHHhccHHHHHHHHHHHHHH----HHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccCCChhhh
Confidence 344445567889999999998653 2334455665543 556667788999999999999887 78888777
Q ss_pred -HHHHHHHHHHHcC
Q 044770 418 -VYNTLIKAYVKAK 430 (464)
Q Consensus 418 -~~~~li~~~~~~g 430 (464)
.|..+-.-|.+..
T Consensus 157 ~~fY~lssqYyk~~ 170 (380)
T KOG2908|consen 157 SSFYSLSSQYYKKI 170 (380)
T ss_pred hhHHHHHHHHHHHH
Confidence 6777777776664
No 346
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=78.30 E-value=30 Score=27.57 Aligned_cols=29 Identities=7% Similarity=-0.180 Sum_probs=12.3
Q ss_pred hHHHHHHHHHHHHcCCCCCCchhHHHHHHHH
Q 044770 42 NKRALEVMEWVIRERPYRPKELDYSYLLEFT 72 (464)
Q Consensus 42 ~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~ 72 (464)
++.|.+.++...... +.|...++.-..++
T Consensus 7 FE~ark~aea~y~~n--P~DadnL~~WG~AL 35 (186)
T PF06552_consen 7 FEHARKKAEAAYAKN--PLDADNLTNWGGAL 35 (186)
T ss_dssp HHHHHHHHHHHHHH---TT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC--cHhHHHHHHHHHHH
Confidence 455555555544433 23444444333333
No 347
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=78.26 E-value=21 Score=25.15 Aligned_cols=90 Identities=11% Similarity=0.044 Sum_probs=59.5
Q ss_pred hhcchHHHHHHHHHHHHcCCCCCCchhHHHHHHHHHhhcChHHHHHHhhhcCCCCCchhHHHHHHHHHHhhCcHHHHHHH
Q 044770 38 KLQLNKRALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQGEKLFCCIPKDYQNELLYNNLVIACLDKGVIKLSLEY 117 (464)
Q Consensus 38 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~ 117 (464)
-....++|..+-+|+.... - ....+--+-+..+...|++++|..+.+... .||...|-+|... +.|-.+.+..-
T Consensus 17 G~HcHqEA~tIAdwL~~~~-~-~~E~v~lIRlsSLmNrG~Yq~Al~l~~~~~--~pdlepw~ALce~--rlGl~s~l~~r 90 (115)
T TIGR02508 17 GHHCHQEANTIADWLHLKG-E-SEEAVQLIRLSSLMNRGDYQSALQLGNKLC--YPDLEPWLALCEW--RLGLGSALESR 90 (115)
T ss_pred cchHHHHHHHHHHHHhcCC-c-hHHHHHHHHHHHHHccchHHHHHHhcCCCC--CchHHHHHHHHHH--hhccHHHHHHH
Confidence 3445688889999887621 1 122233333446778899999999988886 4888888777553 56767777777
Q ss_pred HHHHHHcCCCCchhhHH
Q 044770 118 MKKMRVLGHSISYLVFN 134 (464)
Q Consensus 118 ~~~m~~~~~~~~~~~~~ 134 (464)
+.+|...| .|....|.
T Consensus 91 l~rla~sg-~p~lq~Fa 106 (115)
T TIGR02508 91 LNRLAASG-DPRLQTFV 106 (115)
T ss_pred HHHHHhCC-CHHHHHHH
Confidence 77777766 34444443
No 348
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=77.95 E-value=79 Score=31.62 Aligned_cols=104 Identities=5% Similarity=-0.050 Sum_probs=72.0
Q ss_pred HHHHHHHhhcChHHHHHHhhhcCCCCC---chhHHHHHHHHHHhhCcHHHHHHHHHHHHHcCCCCchhhHHHHHHHhcCC
Q 044770 67 YLLEFTIKNHGISQGEKLFCCIPKDYQ---NELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSP 143 (464)
Q Consensus 67 ~l~~~~~~~g~~~~a~~~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~ 143 (464)
-=++.+.+.+.+++|+...+......+ ....+...|..+...|++++|-...-.|... +..-|..-+..+...
T Consensus 361 Dhi~Wll~~k~yeeAl~~~k~~~~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn----~~~eWe~~V~~f~e~ 436 (846)
T KOG2066|consen 361 DHIDWLLEKKKYEEALDAAKASIGNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGN----NAAEWELWVFKFAEL 436 (846)
T ss_pred hhHHHHHHhhHHHHHHHHHHhccCCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcc----hHHHHHHHHHHhccc
Confidence 346678888999999999988877644 3457788888999999999999998888764 455666666667666
Q ss_pred CCcccHHHHHHHHHhCCCCCChhhHHHHHHHHHc
Q 044770 144 GRRKTIPNILRQMKADKVAPHVSTFHILMKIEAN 177 (464)
Q Consensus 144 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 177 (464)
++......+ +....-..+...|..++..+..
T Consensus 437 ~~l~~Ia~~---lPt~~~rL~p~vYemvLve~L~ 467 (846)
T KOG2066|consen 437 DQLTDIAPY---LPTGPPRLKPLVYEMVLVEFLA 467 (846)
T ss_pred cccchhhcc---CCCCCcccCchHHHHHHHHHHH
Confidence 665444332 2221112345567777777666
No 349
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=76.88 E-value=7.6 Score=22.53 Aligned_cols=23 Identities=26% Similarity=0.365 Sum_probs=11.6
Q ss_pred HHHHHHhcCChhHHHHHHHHHHh
Q 044770 310 VISVYCKNGFIDKASGLLKEMSM 332 (464)
Q Consensus 310 li~~~~~~~~~~~a~~~~~~m~~ 332 (464)
+..+|...|+.+.|.+++++...
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHH
Confidence 34445555555555555555544
No 350
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=76.86 E-value=32 Score=29.58 Aligned_cols=86 Identities=14% Similarity=0.139 Sum_probs=37.8
Q ss_pred HHHHHhhcChhhHHHHHHH-hccCCCCchhhHHHHHHHhhccCChHHHHHHHHHHHhccccCChhhHHHHHHHHHh----
Q 044770 242 IILYGYLAKGKDLERIWAT-VQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCK---- 316 (464)
Q Consensus 242 ~~~~~~~~~~~~a~~~~~~-~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~---- 316 (464)
|++++..+++.++..+.-+ ........+.+...-|-.|.+.+.+..+.++-..-...-...+...|.+++..|..
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VLl 169 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVLL 169 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHHh
Confidence 3444444554444433222 22222223333444445555555555555555444432222223335555544443
Q ss_pred -cCChhHHHHHH
Q 044770 317 -NGFIDKASGLL 327 (464)
Q Consensus 317 -~~~~~~a~~~~ 327 (464)
.|.+++|.++.
T Consensus 170 PLG~~~eAeelv 181 (309)
T PF07163_consen 170 PLGHFSEAEELV 181 (309)
T ss_pred ccccHHHHHHHH
Confidence 36666665555
No 351
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=76.83 E-value=26 Score=30.13 Aligned_cols=88 Identities=7% Similarity=0.043 Sum_probs=48.9
Q ss_pred HHHHHHhhCcHHHHHHHHHHHHHcCCCCchhhHHHHHHHhcCCCCcccHHHHHHHHHhCCCCCChhhHHHHHHHHH----
Q 044770 101 LVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEA---- 176 (464)
Q Consensus 101 li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~---- 176 (464)
=|.+++..+++.+++...-+--+.--+.........|-.|.+.+++..+.++-..-.+..-.-+..-|.+++..|.
T Consensus 89 GIQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VL 168 (309)
T PF07163_consen 89 GIQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVL 168 (309)
T ss_pred hHHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHH
Confidence 3667777777777776654444322222233344444556777777766666655554322233334555554443
Q ss_pred -ccCChhHHHHHH
Q 044770 177 -NDHNIEGLMKVY 188 (464)
Q Consensus 177 -~~~~~~~a~~~~ 188 (464)
-.|.+++|+++.
T Consensus 169 lPLG~~~eAeelv 181 (309)
T PF07163_consen 169 LPLGHFSEAEELV 181 (309)
T ss_pred hccccHHHHHHHH
Confidence 367777777666
No 352
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=76.63 E-value=14 Score=27.23 Aligned_cols=41 Identities=12% Similarity=0.083 Sum_probs=18.9
Q ss_pred HHHHHHhCCCCCcHhHHHHHHHHHHhcChhhHHHHHHHHHH
Q 044770 187 VYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALE 227 (464)
Q Consensus 187 ~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 227 (464)
-+..+....+.|++......+.+|-+.+++..|.++|+-++
T Consensus 71 glN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK 111 (149)
T KOG4077|consen 71 GLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIK 111 (149)
T ss_pred HHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 33333344444444444444444444444444444444443
No 353
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=76.39 E-value=12 Score=22.11 Aligned_cols=35 Identities=11% Similarity=0.357 Sum_probs=26.6
Q ss_pred HHHhcCChhhHHHHHHHHHHcCCCCcHHHHHHHHH
Q 044770 390 IFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIK 424 (464)
Q Consensus 390 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~ 424 (464)
...+.|-..++..++++|.+.|+..+...|..+++
T Consensus 11 ~Ak~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 11 LAKRRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HHHHcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 34566777888888888888888887777776664
No 354
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=76.24 E-value=20 Score=26.48 Aligned_cols=44 Identities=14% Similarity=0.074 Sum_probs=36.3
Q ss_pred HHHHHHHHHHhCCCCccHHHHHHHHHHHHhcCChHHHHHHHHHh
Q 044770 322 KASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELG 365 (464)
Q Consensus 322 ~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 365 (464)
+..+-++.+..-.+.|++......+++|-+.+|+..|.++|+-+
T Consensus 67 EvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~i 110 (149)
T KOG4077|consen 67 EVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAI 110 (149)
T ss_pred HHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 34555666667778899999999999999999999999999887
No 355
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=76.08 E-value=6.1 Score=26.28 Aligned_cols=49 Identities=8% Similarity=0.081 Sum_probs=36.4
Q ss_pred HhcCChHHHHHHHHHhHHHHhhhhhcCCCCc-HHHHHHHHHHHHhcCChhhHHHHH
Q 044770 350 FKSNLVEEGFKALELGMKLITTKKVRSSTPW-LETTLSIIEIFAEKGDVGNAENLF 404 (464)
Q Consensus 350 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~ 404 (464)
....+.++|+..|..+++ +..-.|+ -.++..|+.+|+..|++.+++.+-
T Consensus 17 Y~~~~~~~Al~~W~~aL~------k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA 66 (80)
T PF10579_consen 17 YHQNETQQALQKWRKALE------KITDREDRFRVLGYLIQAHMEWGKYREMLAFA 66 (80)
T ss_pred hccchHHHHHHHHHHHHh------hcCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 367788999999999963 2222333 356788999999999999987763
No 356
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=75.89 E-value=44 Score=27.62 Aligned_cols=177 Identities=15% Similarity=0.084 Sum_probs=98.2
Q ss_pred hHHHHHHhhhcCCCCC-chhHHHHHHHHHHhhCcHHHHHHHHHHHHHcCCCCchhhHHHHHHHhcCCCCcccHHHHHHHH
Q 044770 78 ISQGEKLFCCIPKDYQ-NELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQM 156 (464)
Q Consensus 78 ~~~a~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 156 (464)
.+-|+--|.+.....| -..+||.+.--+...|+++.|.+.|+...+.+..-+-...|.-|. +.-.|+++-|.+-|...
T Consensus 81 ~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~-~YY~gR~~LAq~d~~~f 159 (297)
T COG4785 81 RALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIA-LYYGGRYKLAQDDLLAF 159 (297)
T ss_pred HHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhcccee-eeecCchHhhHHHHHHH
Confidence 3334434444433334 356889999889999999999999999988653333333333333 33467888888777766
Q ss_pred HhCCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCcHhHHHHHHHHHHhcChhhHHHHHHHHHHhccCCCC--
Q 044770 157 KADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNN-- 234 (464)
Q Consensus 157 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~-- 234 (464)
-+.. |+...-...+-.--..-++.+|..-+.+-.+ ..|..-|...|-.+.- |+.. ...+++++... ...+
T Consensus 160 YQ~D--~~DPfR~LWLYl~E~k~dP~~A~tnL~qR~~---~~d~e~WG~~iV~~yL-gkiS-~e~l~~~~~a~-a~~n~~ 231 (297)
T COG4785 160 YQDD--PNDPFRSLWLYLNEQKLDPKQAKTNLKQRAE---KSDKEQWGWNIVEFYL-GKIS-EETLMERLKAD-ATDNTS 231 (297)
T ss_pred HhcC--CCChHHHHHHHHHHhhCCHHHHHHHHHHHHH---hccHhhhhHHHHHHHH-hhcc-HHHHHHHHHhh-ccchHH
Confidence 6543 3322222222222334556666654443322 2344455444433321 2211 11222333221 1111
Q ss_pred -----hhhHHHHHHHHHhhcChhhHHHHHHHhcc
Q 044770 235 -----WSTLDVLIILYGYLAKGKDLERIWATVQE 263 (464)
Q Consensus 235 -----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 263 (464)
..||--+...+...|+.++|..+|+....
T Consensus 232 ~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaia 265 (297)
T COG4785 232 LAEHLTETYFYLGKYYLSLGDLDEATALFKLAVA 265 (297)
T ss_pred HHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence 35677778888889999999999887654
No 357
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=75.88 E-value=97 Score=31.59 Aligned_cols=224 Identities=7% Similarity=-0.002 Sum_probs=110.3
Q ss_pred HhhCcHHHHHHHHHHHHHcCCCCch-------hhHHHHHH-HhcCCCCcccHHHHHHHHHhC----CCCCChhhHHHHHH
Q 044770 106 LDKGVIKLSLEYMKKMRVLGHSISY-------LVFNRLII-LNSSPGRRKTIPNILRQMKAD----KVAPHVSTFHILMK 173 (464)
Q Consensus 106 ~~~~~~~~a~~~~~~m~~~~~~~~~-------~~~~~l~~-~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~l~~ 173 (464)
....++.+|..++.++...-..|+. ..++.+-. .....|+++.+.++-+..... -..+....+..+..
T Consensus 426 ~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~ 505 (894)
T COG2909 426 ASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGE 505 (894)
T ss_pred HHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhH
Confidence 3467888888888877653212221 13333322 234567788888877776543 22345566677778
Q ss_pred HHHccCChhHHHHHHHHHHhCCCCCcHhHHH---HHHH--HHHhcChhh--HHHHHHHHHHhcc---CCC---ChhhHHH
Q 044770 174 IEANDHNIEGLMKVYSDMKRSEVEPNEVSYC---ILAT--AHAVARLYT--VAETYVEALEKSM---TGN---NWSTLDV 240 (464)
Q Consensus 174 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~---~li~--~~~~~~~~~--~a~~~~~~~~~~~---~~~---~~~~~~~ 240 (464)
+..-.|++++|..+..+..+..-.-+...+. .+.. .+...|+.. +....+....... .+. -.-+...
T Consensus 506 a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ 585 (894)
T COG2909 506 AAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQ 585 (894)
T ss_pred HHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHH
Confidence 8888899999988877665432222333332 2222 244556332 2333333332210 111 1223333
Q ss_pred HHHHHHhhc-ChhhHHHHHHHhccCCCCc---hhhHHHHHHHhhccCChHHHHHHHHHHHhccccCCh-hhHHHH---HH
Q 044770 241 LIILYGYLA-KGKDLERIWATVQELPNVR---SKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKAT-EQYNSV---IS 312 (464)
Q Consensus 241 l~~~~~~~~-~~~~a~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~l---i~ 312 (464)
++.++.+.. ...++..-++......+.. ...+..|+..+...|++++|...++++......+.. +-|.+. +.
T Consensus 586 ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~~v~ 665 (894)
T COG2909 586 LLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAAYKVK 665 (894)
T ss_pred HHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHHHhh
Confidence 444444311 1112222222211111111 112235667777889999999888887764333321 112221 22
Q ss_pred HH--HhcCChhHHHHHHHH
Q 044770 313 VY--CKNGFIDKASGLLKE 329 (464)
Q Consensus 313 ~~--~~~~~~~~a~~~~~~ 329 (464)
.. ...|+.+.+.....+
T Consensus 666 ~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 666 LILWLAQGDKELAAEWLLK 684 (894)
T ss_pred HHHhcccCCHHHHHHHHHh
Confidence 11 234666666655544
No 358
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=75.46 E-value=42 Score=27.19 Aligned_cols=89 Identities=4% Similarity=-0.169 Sum_probs=45.1
Q ss_pred HHHhhcChhhHHHHHHHhccCCCCch---hhHHHHHHHhhccCChHHHHHHHHHHHhccccCChhhHHHHHHHHHhcCCh
Q 044770 244 LYGYLAKGKDLERIWATVQELPNVRS---KSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFI 320 (464)
Q Consensus 244 ~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~ 320 (464)
.+...++.+.|+..++.....+.... ..--.|.+.....|.+++|+..++.....+.. ......-.+.+...|+-
T Consensus 98 ~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w~--~~~~elrGDill~kg~k 175 (207)
T COG2976 98 AEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESWA--AIVAELRGDILLAKGDK 175 (207)
T ss_pred HHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccHH--HHHHHHhhhHHHHcCch
Confidence 34444555555554444333222111 11223455566667777777777666553211 11122234566667777
Q ss_pred hHHHHHHHHHHhCC
Q 044770 321 DKASGLLKEMSMNG 334 (464)
Q Consensus 321 ~~a~~~~~~m~~~g 334 (464)
++|..-|....+.+
T Consensus 176 ~~Ar~ay~kAl~~~ 189 (207)
T COG2976 176 QEARAAYEKALESD 189 (207)
T ss_pred HHHHHHHHHHHHcc
Confidence 77777777766654
No 359
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=75.12 E-value=33 Score=27.90 Aligned_cols=18 Identities=11% Similarity=-0.053 Sum_probs=8.8
Q ss_pred HhcChhhHHHHHHHHHHh
Q 044770 211 AVARLYTVAETYVEALEK 228 (464)
Q Consensus 211 ~~~~~~~~a~~~~~~~~~ 228 (464)
.+.|++++|..-|...+.
T Consensus 106 F~ngdyeeA~skY~~Ale 123 (271)
T KOG4234|consen 106 FKNGDYEEANSKYQEALE 123 (271)
T ss_pred hhcccHHHHHHHHHHHHH
Confidence 344555555555544444
No 360
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=74.21 E-value=15 Score=21.72 Aligned_cols=34 Identities=15% Similarity=0.244 Sum_probs=25.5
Q ss_pred HHhcCChhHHHHHHHHHHhCCCCccHHHHHHHHH
Q 044770 314 YCKNGFIDKASGLLKEMSMNGCKPNAITYRHLAL 347 (464)
Q Consensus 314 ~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~ 347 (464)
..+.|-.+++..++++|.+.|+..+...|..++.
T Consensus 12 Ak~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 12 AKRRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HHHcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 3556777788888888888888877777776664
No 361
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=73.66 E-value=59 Score=28.10 Aligned_cols=57 Identities=21% Similarity=0.137 Sum_probs=30.1
Q ss_pred HHHHHHHHhcCChhHHHHHHHH----HHhCCCCccHHHHHHHH-HHHHhcCChHHHHHHHHH
Q 044770 308 NSVISVYCKNGFIDKASGLLKE----MSMNGCKPNAITYRHLA-LGCFKSNLVEEGFKALEL 364 (464)
Q Consensus 308 ~~li~~~~~~~~~~~a~~~~~~----m~~~g~~p~~~~~~~ll-~~~~~~~~~~~a~~~~~~ 364 (464)
..++..+.+.|++.+|+.+... +.+..-+|+..+...+= .+|..-.++.++..-+..
T Consensus 129 ~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~vhllESKvyh~irnv~KskaSLTa 190 (421)
T COG5159 129 CKLIYLLYKTGKYSDALALINPLLHELKKYDDKINLITVHLLESKVYHEIRNVSKSKASLTA 190 (421)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceeehhhhhHHHHHHHHhhhhhhhHHHH
Confidence 4567788888888888876544 44444445544432221 224444444444443333
No 362
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=73.45 E-value=30 Score=27.54 Aligned_cols=84 Identities=14% Similarity=0.169 Sum_probs=44.1
Q ss_pred CChHHHHHHHHHhHHHHhhhhhcCCCCcH-HHHHHHHHHHHhcC----C-------hhhHHHHHHHHHHcCCCCcHHHHH
Q 044770 353 NLVEEGFKALELGMKLITTKKVRSSTPWL-ETTLSIIEIFAEKG----D-------VGNAENLFEELKKANYTKYTFVYN 420 (464)
Q Consensus 353 ~~~~~a~~~~~~~~~~~~~~~~~~~~p~~-~~~~~li~~~~~~g----~-------~~~A~~~~~~m~~~~~~p~~~~~~ 420 (464)
....++..++++++.... ....+.|+. .++..+..+|...+ + +++|.+.|+...+. .|+...|+
T Consensus 42 k~g~es~~miedAisK~e--eAL~I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~--~P~ne~Y~ 117 (186)
T PF06552_consen 42 KQGPESKKMIEDAISKFE--EALKINPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDE--DPNNELYR 117 (186)
T ss_dssp S-HHHHHHHHHHHHHHHH--HHHHH-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH---TT-HHHH
T ss_pred cCcchHHHHHHHHHHHHH--HHHhcCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhc--CCCcHHHH
Confidence 333444444444433222 223456654 56667777765533 3 34455555555553 59999999
Q ss_pred HHHHHHHHcCCChhHHHHHHHhCC
Q 044770 421 TLIKAYVKAKINDPNLLRRMILGG 444 (464)
Q Consensus 421 ~li~~~~~~g~~a~~~~~~m~~~~ 444 (464)
.-+....+ |-++..+..+.+
T Consensus 118 ksLe~~~k----ap~lh~e~~~~~ 137 (186)
T PF06552_consen 118 KSLEMAAK----APELHMEIHKQG 137 (186)
T ss_dssp HHHHHHHT----HHHHHHHHHHSS
T ss_pred HHHHHHHh----hHHHHHHHHHHH
Confidence 98888753 555555555543
No 363
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=73.24 E-value=33 Score=27.87 Aligned_cols=88 Identities=5% Similarity=-0.053 Sum_probs=38.4
Q ss_pred HHhhCcHHHHHHHHHHHHHcCCCCch-----hhHHHHHHHhcCCCCcccHHHHHHHHHhCCCCCChhhHHHHHHHHHccC
Q 044770 105 CLDKGVIKLSLEYMKKMRVLGHSISY-----LVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDH 179 (464)
Q Consensus 105 ~~~~~~~~~a~~~~~~m~~~~~~~~~-----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 179 (464)
+.+.|++++|..-|...+.. +++.. ..|..-..++.+.+.++.|+.--...++.+ +......---..+|.+..
T Consensus 105 ~F~ngdyeeA~skY~~Ale~-cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~-pty~kAl~RRAeayek~e 182 (271)
T KOG4234|consen 105 LFKNGDYEEANSKYQEALES-CPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELN-PTYEKALERRAEAYEKME 182 (271)
T ss_pred hhhcccHHHHHHHHHHHHHh-CccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcC-chhHHHHHHHHHHHHhhh
Confidence 44556666666666655554 22221 122222233444555555555444444332 111111111223445555
Q ss_pred ChhHHHHHHHHHHhC
Q 044770 180 NIEGLMKVYSDMKRS 194 (464)
Q Consensus 180 ~~~~a~~~~~~m~~~ 194 (464)
.+++|+.=|.++.+.
T Consensus 183 k~eealeDyKki~E~ 197 (271)
T KOG4234|consen 183 KYEEALEDYKKILES 197 (271)
T ss_pred hHHHHHHHHHHHHHh
Confidence 555555555555543
No 364
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=71.92 E-value=22 Score=28.90 Aligned_cols=54 Identities=13% Similarity=-0.012 Sum_probs=41.1
Q ss_pred hcCChHHHHHHHHHhHHHHhhhhhcCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHHHc
Q 044770 351 KSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKA 410 (464)
Q Consensus 351 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 410 (464)
...+.+......+.+. +.....|+..+|..++..+...|+.++|.+..+++...
T Consensus 120 ~~~~~~~l~~~~~~a~------~~l~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~l 173 (193)
T PF11846_consen 120 LPPDPEMLEAYIEWAE------RLLRRRPDPNVYQRYALALALLGDPEEARQWLARARRL 173 (193)
T ss_pred CCCCHHHHHHHHHHHH------HHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4455555555555543 33567899999999999999999999999999998874
No 365
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=71.40 E-value=76 Score=28.33 Aligned_cols=107 Identities=11% Similarity=0.015 Sum_probs=57.4
Q ss_pred hHHHHHHhhhcCCC------CCchhHHHHHHHHHHhhCcHHHHHHHHHHHHHcCCCCchhhHHHHHHHhcCCCCcccHHH
Q 044770 78 ISQGEKLFCCIPKD------YQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPN 151 (464)
Q Consensus 78 ~~~a~~~~~~~~~~------~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 151 (464)
.+.|.+.|+..... ..+......++....+.|..+.-..+++.... .++......++.+++...+.+...+
T Consensus 146 ~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~---~~~~~~k~~~l~aLa~~~d~~~~~~ 222 (324)
T PF11838_consen 146 VAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKN---STSPEEKRRLLSALACSPDPELLKR 222 (324)
T ss_dssp HHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHT---TSTHHHHHHHHHHHTT-S-HHHHHH
T ss_pred HHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhc---cCCHHHHHHHHHhhhccCCHHHHHH
Confidence 45666667665442 12344455556666666765554444444443 2356667788888888888888888
Q ss_pred HHHHHHhCC-CCCChhhHHHHHHHHHccCCh--hHHHHHHH
Q 044770 152 ILRQMKADK-VAPHVSTFHILMKIEANDHNI--EGLMKVYS 189 (464)
Q Consensus 152 ~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~--~~a~~~~~ 189 (464)
+++.....+ +++.. .+ .++.++...+.. +.+.+.+.
T Consensus 223 ~l~~~l~~~~v~~~d-~~-~~~~~~~~~~~~~~~~~~~~~~ 261 (324)
T PF11838_consen 223 LLDLLLSNDKVRSQD-IR-YVLAGLASSNPVGRDLAWEFFK 261 (324)
T ss_dssp HHHHHHCTSTS-TTT-HH-HHHHHHH-CSTTCHHHHHHHHH
T ss_pred HHHHHcCCcccccHH-HH-HHHHHHhcCChhhHHHHHHHHH
Confidence 888888754 33333 33 344444433333 55555543
No 366
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=71.18 E-value=13 Score=32.83 Aligned_cols=52 Identities=23% Similarity=0.118 Sum_probs=35.0
Q ss_pred HHHHccCChhHHHHHHHHHHhCCCCC-cHhHHHHHHHHHHhcChhhHHHHHHHHH
Q 044770 173 KIEANDHNIEGLMKVYSDMKRSEVEP-NEVSYCILATAHAVARLYTVAETYVEAL 226 (464)
Q Consensus 173 ~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~~ 226 (464)
+-|.++|.+++|+..|..-... .| |.+++..-..+|.+...+..|..-....
T Consensus 105 N~yFKQgKy~EAIDCYs~~ia~--~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~A 157 (536)
T KOG4648|consen 105 NTYFKQGKYEEAIDCYSTAIAV--YPHNPVYHINRALAYLKQKSFAQAEEDCEAA 157 (536)
T ss_pred hhhhhccchhHHHHHhhhhhcc--CCCCccchhhHHHHHHHHHHHHHHHHhHHHH
Confidence 4577778888888877765543 44 6777777777777777777665544444
No 367
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=70.96 E-value=34 Score=24.16 Aligned_cols=60 Identities=13% Similarity=0.190 Sum_probs=40.3
Q ss_pred HHHhhccCChHHHHHHHHHHHhccccCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCccHHHH
Q 044770 276 IEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITY 342 (464)
Q Consensus 276 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~ 342 (464)
+..+...|++++|..+.+... .||...|-++-. .+.|..+++..-+.+|..+| .|....|
T Consensus 46 lsSLmNrG~Yq~Al~l~~~~~----~pdlepw~ALce--~rlGl~s~l~~rl~rla~sg-~p~lq~F 105 (115)
T TIGR02508 46 LSSLMNRGDYQSALQLGNKLC----YPDLEPWLALCE--WRLGLGSALESRLNRLAASG-DPRLQTF 105 (115)
T ss_pred HHHHHccchHHHHHHhcCCCC----CchHHHHHHHHH--HhhccHHHHHHHHHHHHhCC-CHHHHHH
Confidence 456677888888888877663 478777766533 56677777777777777765 3444443
No 368
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=70.21 E-value=37 Score=24.30 Aligned_cols=89 Identities=13% Similarity=0.137 Sum_probs=54.9
Q ss_pred hhcchHHHHHHHHHHHHcCCCCCCchhHHHHHHHHHhhcChHHHHHHhhhcCCCCCchhHHHHHHHHHHhhCcHHHHHHH
Q 044770 38 KLQLNKRALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQGEKLFCCIPKDYQNELLYNNLVIACLDKGVIKLSLEY 117 (464)
Q Consensus 38 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~ 117 (464)
.....++|..+.+|+....+ ....+--+-+..+.+.|++++| +..-.....||...|-+|-. .+.|-.+++...
T Consensus 18 G~HcH~EA~tIa~wL~~~~~--~~E~v~lIr~~sLmNrG~Yq~A--Ll~~~~~~~pdL~p~~AL~a--~klGL~~~~e~~ 91 (116)
T PF09477_consen 18 GHHCHQEANTIADWLEQEGE--MEEVVALIRLSSLMNRGDYQEA--LLLPQCHCYPDLEPWAALCA--WKLGLASALESR 91 (116)
T ss_dssp TTT-HHHHHHHHHHHHHTTT--THHHHHHHHHHHHHHTT-HHHH--HHHHTTS--GGGHHHHHHHH--HHCT-HHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHHhhHHHHHH--HHhcccCCCccHHHHHHHHH--HhhccHHHHHHH
Confidence 45677899999999987332 2223333344467789999999 33333333688888877654 477888888888
Q ss_pred HHHHHHcCCCCchhhH
Q 044770 118 MKKMRVLGHSISYLVF 133 (464)
Q Consensus 118 ~~~m~~~~~~~~~~~~ 133 (464)
+.++...| .|....|
T Consensus 92 l~rla~~g-~~~~q~F 106 (116)
T PF09477_consen 92 LTRLASSG-SPELQAF 106 (116)
T ss_dssp HHHHCT-S-SHHHHHH
T ss_pred HHHHHhCC-CHHHHHH
Confidence 88887765 3343333
No 369
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=69.62 E-value=84 Score=28.16 Aligned_cols=126 Identities=13% Similarity=0.047 Sum_probs=79.7
Q ss_pred hHHHHHHHHHHHhccccCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCccHHHHHHHHHHHHh---cCChHHHHHH
Q 044770 285 VSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFK---SNLVEEGFKA 361 (464)
Q Consensus 285 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~---~~~~~~a~~~ 361 (464)
.+.-+.++++..+. .+.+...+...+..+.+....++..+-++++...... +...|...|..... .-.++....+
T Consensus 47 ~E~klsilerAL~~-np~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~-~~~LW~~yL~~~q~~~~~f~v~~~~~~ 124 (321)
T PF08424_consen 47 AERKLSILERALKH-NPDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKNPG-SPELWREYLDFRQSNFASFTVSDVRDV 124 (321)
T ss_pred HHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCC-ChHHHHHHHHHHHHHhccCcHHHHHHH
Confidence 35566777777775 3345666777777777777788888888888875321 55666666665433 2356777777
Q ss_pred HHHhHHHHhhhhhcC---C--CCc-----HHHHHHHHHHHHhcCChhhHHHHHHHHHHcCC
Q 044770 362 LELGMKLITTKKVRS---S--TPW-----LETTLSIIEIFAEKGDVGNAENLFEELKKANY 412 (464)
Q Consensus 362 ~~~~~~~~~~~~~~~---~--~p~-----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 412 (464)
|.+.++......... . .++ ..++..+...+..+|..+.|..+++.+.+.++
T Consensus 125 y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n~ 185 (321)
T PF08424_consen 125 YEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFNF 185 (321)
T ss_pred HHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHHc
Confidence 777765433322221 1 111 12233444445679999999999999998766
No 370
>KOG2582 consensus COP9 signalosome, subunit CSN3 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=69.59 E-value=86 Score=28.24 Aligned_cols=56 Identities=11% Similarity=0.098 Sum_probs=30.1
Q ss_pred hhccCChHHHHHHHHHHHhccccCChhhHHHHH----HHHHhcCChhHHHHHHHHHHhCC
Q 044770 279 FGRIAQVSRAEELWLEMQSVKQLKATEQYNSVI----SVYCKNGFIDKASGLLKEMSMNG 334 (464)
Q Consensus 279 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li----~~~~~~~~~~~a~~~~~~m~~~g 334 (464)
+.+.++..-+......+.++++..=..+|.++= ...++.+..++|.+..-+|.+.|
T Consensus 287 F~kDnnt~l~k~av~sl~k~nI~rltktF~sLsL~dIA~~vQLa~~qevek~Ilqmie~~ 346 (422)
T KOG2582|consen 287 FTKDNNTGLAKQAVSSLYKKNIQRLTKTFLSLSLSDIASRVQLASAQEVEKYILQMIEDG 346 (422)
T ss_pred HhhcCcHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcchHHHHHHHHHHhccC
Confidence 344556666666666666654444344454442 22234455566666666666544
No 371
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=69.14 E-value=6.3 Score=29.37 Aligned_cols=32 Identities=6% Similarity=0.098 Sum_probs=24.8
Q ss_pred ccCChHHHHHHHHHHHhccccCChhhHHHHHHHH
Q 044770 281 RIAQVSRAEELWLEMQSVKQLKATEQYNSVISVY 314 (464)
Q Consensus 281 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 314 (464)
..|.-..|..+|+.|.+.|.+|| .|+.|+...
T Consensus 107 ~ygsk~DaY~VF~kML~~G~pPd--dW~~Ll~~a 138 (140)
T PF11663_consen 107 AYGSKTDAYAVFRKMLERGNPPD--DWDALLKEA 138 (140)
T ss_pred hhccCCcHHHHHHHHHhCCCCCc--cHHHHHHHh
Confidence 34556678999999999998888 588887653
No 372
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=68.97 E-value=11 Score=18.64 Aligned_cols=26 Identities=19% Similarity=0.114 Sum_probs=13.1
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHh
Q 044770 307 YNSVISVYCKNGFIDKASGLLKEMSM 332 (464)
Q Consensus 307 ~~~li~~~~~~~~~~~a~~~~~~m~~ 332 (464)
|..+...+...|+++.|...++...+
T Consensus 4 ~~~~a~~~~~~~~~~~a~~~~~~~~~ 29 (34)
T smart00028 4 LYNLGNAYLKLGDYDEALEYYEKALE 29 (34)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHc
Confidence 44444455555555555555554443
No 373
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=68.95 E-value=56 Score=26.17 Aligned_cols=44 Identities=14% Similarity=0.195 Sum_probs=36.7
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHHcCCCCcHHHHHHHHHHHHHcCCC
Q 044770 386 SIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKIN 432 (464)
Q Consensus 386 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~ 432 (464)
..+-.|.+.|.+++|.+++++.... |+......-+....+.++.
T Consensus 116 ~aV~VCm~~g~Fk~A~eiLkr~~~d---~~~~~~r~kL~~II~~Kd~ 159 (200)
T cd00280 116 QAVAVCMENGEFKKAEEVLKRLFSD---PESQKLRMKLLMIIREKDP 159 (200)
T ss_pred HHHHHHHhcCchHHHHHHHHHHhcC---CCchhHHHHHHHHHHcccc
Confidence 4566789999999999999999884 7777778888888888874
No 374
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=68.75 E-value=7.4 Score=29.01 Aligned_cols=34 Identities=15% Similarity=0.269 Sum_probs=25.9
Q ss_pred HHhcCChhhHHHHHHHHHHcCCCCcHHHHHHHHHHH
Q 044770 391 FAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAY 426 (464)
Q Consensus 391 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~ 426 (464)
+-+.|.-.+|-.+|+.|.+.|-+||. |+.|+...
T Consensus 105 lR~ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~a 138 (140)
T PF11663_consen 105 LRAYGSKTDAYAVFRKMLERGNPPDD--WDALLKEA 138 (140)
T ss_pred hhhhccCCcHHHHHHHHHhCCCCCcc--HHHHHHHh
Confidence 33456777888899999999987765 88887764
No 375
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=68.73 E-value=61 Score=30.80 Aligned_cols=33 Identities=18% Similarity=0.273 Sum_probs=16.6
Q ss_pred HHHHHHHHHHhhCcHHHHHHHHHHHHHcCCCCc
Q 044770 97 LYNNLVIACLDKGVIKLSLEYMKKMRVLGHSIS 129 (464)
Q Consensus 97 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~ 129 (464)
.+..++.+....+....|+.+++++.+.|..|.
T Consensus 250 ~~~~l~~si~~~d~~~~al~~l~~l~~~G~d~~ 282 (484)
T PRK14956 250 FLTSFIKSLIDPDNHSKSLEILESLYQEGQDIY 282 (484)
T ss_pred HHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCHH
Confidence 333444444333344556666666666655443
No 376
>PRK11619 lytic murein transglycosylase; Provisional
Probab=68.67 E-value=1.3e+02 Score=30.08 Aligned_cols=118 Identities=9% Similarity=0.037 Sum_probs=62.8
Q ss_pred cCChhHHHHHHHHHHhCC-CCCcH--hHHHHHHHHHHhcChhhHHHHHHHHHHhccCCCChhhHHHHHHHHHhhcChhhH
Q 044770 178 DHNIEGLMKVYSDMKRSE-VEPNE--VSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDL 254 (464)
Q Consensus 178 ~~~~~~a~~~~~~m~~~~-~~p~~--~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 254 (464)
..+.+.|..++....... ..+.. ..+..+....+..+...++...++..... ..+......-+......++++.+
T Consensus 254 r~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~--~~~~~~~e~r~r~Al~~~dw~~~ 331 (644)
T PRK11619 254 RQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMR--SQSTSLLERRVRMALGTGDRRGL 331 (644)
T ss_pred HhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhcccc--cCCcHHHHHHHHHHHHccCHHHH
Confidence 345566777776653332 22221 12233332222222234455544443222 12333344445555577788888
Q ss_pred HHHHHHhccCCCCchhhHHHHHHHhhccCChHHHHHHHHHHHh
Q 044770 255 ERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQS 297 (464)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 297 (464)
...+..|.........-.--+.+++...|+.++|...|+.+..
T Consensus 332 ~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~ 374 (644)
T PRK11619 332 NTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLMQ 374 (644)
T ss_pred HHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 8888777664444444455667776678888888888887643
No 377
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=68.61 E-value=39 Score=25.99 Aligned_cols=66 Identities=14% Similarity=-0.007 Sum_probs=49.0
Q ss_pred HHHHHHHhccccCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCccHHHHHHHHHHHHhcCChH
Q 044770 290 ELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVE 356 (464)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~ 356 (464)
++...+.+.|.+++. .-..++..+...+..-.|.++++++.+.+...+..|....+..+...|-+.
T Consensus 7 ~~~~~lk~~glr~T~-qR~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~Glv~ 72 (145)
T COG0735 7 DAIERLKEAGLRLTP-QRLAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAGLVH 72 (145)
T ss_pred HHHHHHHHcCCCcCH-HHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCCCEE
Confidence 344555666666544 456677888888777999999999999888878888777788888777443
No 378
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=68.38 E-value=37 Score=23.52 Aligned_cols=56 Identities=13% Similarity=-0.007 Sum_probs=33.2
Q ss_pred ccChhchHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCCchhHHHHHHHHHhhcCh
Q 044770 23 PVHRGEIFHSINRLRKLQLNKRALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGI 78 (464)
Q Consensus 23 ~~~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 78 (464)
|-|...-..+...+...|++++|++.+-.+.+...-.-+...-..|+..+.-.|.-
T Consensus 19 P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~ 74 (90)
T PF14561_consen 19 PDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPG 74 (90)
T ss_dssp TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCC
Confidence 44556667777778888888888888777776432223444555666655555543
No 379
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=68.00 E-value=1.5e+02 Score=30.60 Aligned_cols=38 Identities=13% Similarity=0.130 Sum_probs=24.3
Q ss_pred hcCCCCcccHHHHHHHHHhCCCCCChhhHHHHHHHHHc
Q 044770 140 NSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEAN 177 (464)
Q Consensus 140 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 177 (464)
|......+-+..+++.+....-.++....+.++..|++
T Consensus 601 ~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e 638 (877)
T KOG2063|consen 601 YLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLE 638 (877)
T ss_pred HhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHH
Confidence 44555667777777777665445566666666666654
No 380
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=66.97 E-value=49 Score=31.83 Aligned_cols=87 Identities=16% Similarity=0.101 Sum_probs=41.5
Q ss_pred hhCcHHHHHHHHHHHHHcCCCCchhhHHHHHHHhcCCCCcccHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhHHHH
Q 044770 107 DKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMK 186 (464)
Q Consensus 107 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 186 (464)
..|+...|...+.................|.....+.|-.-+|-.++.+.+... .....++-.+.+++....+++.|++
T Consensus 619 ~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~-~sepl~~~~~g~~~l~l~~i~~a~~ 697 (886)
T KOG4507|consen 619 AVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAIN-SSEPLTFLSLGNAYLALKNISGALE 697 (886)
T ss_pred ecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhc-ccCchHHHhcchhHHHHhhhHHHHH
Confidence 345555555555444332211122223334444445555555555555554433 2333344455555666666666666
Q ss_pred HHHHHHhC
Q 044770 187 VYSDMKRS 194 (464)
Q Consensus 187 ~~~~m~~~ 194 (464)
.|++..+.
T Consensus 698 ~~~~a~~~ 705 (886)
T KOG4507|consen 698 AFRQALKL 705 (886)
T ss_pred HHHHHHhc
Confidence 66555443
No 381
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=66.96 E-value=1.6e+02 Score=30.24 Aligned_cols=225 Identities=13% Similarity=0.022 Sum_probs=120.8
Q ss_pred hcCCCCcccHHHHHHHHHhCCCCCChh-------hHHHHH-HHHHccCChhHHHHHHHHHHhC----CCCCcHhHHHHHH
Q 044770 140 NSSPGRRKTIPNILRQMKADKVAPHVS-------TFHILM-KIEANDHNIEGLMKVYSDMKRS----EVEPNEVSYCILA 207 (464)
Q Consensus 140 ~~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~l~-~~~~~~~~~~~a~~~~~~m~~~----~~~p~~~~~~~li 207 (464)
.....++++|..++.++...--.|+.. .|+.+- ......|+++.|.++-+..... -..+....+..+.
T Consensus 425 ~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~ 504 (894)
T COG2909 425 LASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLG 504 (894)
T ss_pred HHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhh
Confidence 345677899999988876532122221 233332 2234578899999888776543 1334556667777
Q ss_pred HHHHhcChhhHHHHHHHHHHhccCCCChhhHHHHH-----HHHHhhcC--hhhHHHHHHHhcc----CCCC---chhhHH
Q 044770 208 TAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLI-----ILYGYLAK--GKDLERIWATVQE----LPNV---RSKSYV 273 (464)
Q Consensus 208 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~-----~~~~~~~~--~~~a~~~~~~~~~----~~~~---~~~~~~ 273 (464)
.+..-.|++++|..+.....+....-+...+.... ..+...|+ .......+..... ..+. -..+..
T Consensus 505 ~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~ 584 (894)
T COG2909 505 EAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRA 584 (894)
T ss_pred HHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHH
Confidence 77888899999999888776654334433333222 23445553 2233333333332 1111 122344
Q ss_pred HHHHHhhcc-CChHHHHHHHHHHHhccccCChhh--HHHHHHHHHhcCChhHHHHHHHHHHhCCCC----ccHHHHHHHH
Q 044770 274 LAIEAFGRI-AQVSRAEELWLEMQSVKQLKATEQ--YNSVISVYCKNGFIDKASGLLKEMSMNGCK----PNAITYRHLA 346 (464)
Q Consensus 274 ~l~~~~~~~-g~~~~a~~~~~~~~~~~~~~~~~~--~~~li~~~~~~~~~~~a~~~~~~m~~~g~~----p~~~~~~~ll 346 (464)
.+..++.+. +...++..-++--......|-... +..|+......|+.++|...++++...... ++..+-...+
T Consensus 585 ~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~~v 664 (894)
T COG2909 585 QLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAAYKV 664 (894)
T ss_pred HHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHHHh
Confidence 444444441 122222222222222222221222 235667778889999999999888764333 3333333333
Q ss_pred HH--HHhcCChHHHHHHHHH
Q 044770 347 LG--CFKSNLVEEGFKALEL 364 (464)
Q Consensus 347 ~~--~~~~~~~~~a~~~~~~ 364 (464)
.. ....|+.+.+.....+
T Consensus 665 ~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 665 KLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred hHHHhcccCCHHHHHHHHHh
Confidence 33 3456777777666655
No 382
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=66.93 E-value=12 Score=30.43 Aligned_cols=41 Identities=12% Similarity=0.114 Sum_probs=25.6
Q ss_pred HhhhcCCCCCchhHHHHHHHHHHhhCcHHHHHHHHHHHHHc
Q 044770 84 LFCCIPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMRVL 124 (464)
Q Consensus 84 ~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 124 (464)
..++.....|+...|..++.++...|+.++|.+...++...
T Consensus 133 ~a~~~l~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~l 173 (193)
T PF11846_consen 133 WAERLLRRRPDPNVYQRYALALALLGDPEEARQWLARARRL 173 (193)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 33344444566666777777777777777777776666653
No 383
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=66.46 E-value=36 Score=22.77 Aligned_cols=49 Identities=6% Similarity=-0.151 Sum_probs=28.6
Q ss_pred hcCChhHHHHHHHHHHhCCCCccH--HHHHHHHHHHHhcCChHHHHHHHHH
Q 044770 316 KNGFIDKASGLLKEMSMNGCKPNA--ITYRHLALGCFKSNLVEEGFKALEL 364 (464)
Q Consensus 316 ~~~~~~~a~~~~~~m~~~g~~p~~--~~~~~ll~~~~~~~~~~~a~~~~~~ 364 (464)
..++.++|+..|....+.-..|.. .++..++.+++..|++++++.+--.
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~ 68 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQ 68 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566677777666654333221 3556666777777777766655433
No 384
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=65.52 E-value=78 Score=28.02 Aligned_cols=49 Identities=12% Similarity=0.060 Sum_probs=24.1
Q ss_pred HhcCChhHHHHHHHHHHhCCCCccHHH---HHHHHHHHHhcCChHHHHHHHHHh
Q 044770 315 CKNGFIDKASGLLKEMSMNGCKPNAIT---YRHLALGCFKSNLVEEGFKALELG 365 (464)
Q Consensus 315 ~~~~~~~~a~~~~~~m~~~g~~p~~~~---~~~ll~~~~~~~~~~~a~~~~~~~ 365 (464)
.+.|+..+|.+.|+++.+. .|-... -..++.+|....-+.+...++.+-
T Consensus 286 RklGrlrEA~K~~RDL~ke--~pl~t~lniheNLiEalLE~QAYADvqavLakY 337 (556)
T KOG3807|consen 286 RKLGRLREAVKIMRDLMKE--FPLLTMLNIHENLLEALLELQAYADVQAVLAKY 337 (556)
T ss_pred HHhhhHHHHHHHHHHHhhh--ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3456666666666665542 121111 224555555555555555444443
No 385
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=65.35 E-value=90 Score=26.93 Aligned_cols=107 Identities=16% Similarity=0.023 Sum_probs=54.0
Q ss_pred ccCChHHHHHHHHHHHhccccCChhhHHHHHHHHHhcCChhHHHHH----HHHHHhCCCCccHHHHHHHHHHHHhcCChH
Q 044770 281 RIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGL----LKEMSMNGCKPNAITYRHLALGCFKSNLVE 356 (464)
Q Consensus 281 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~----~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~ 356 (464)
+.+++++|.+++..-.. .+.+.|+...|-++ ++-..+.+..+|......++..+...+.-+
T Consensus 2 ~~kky~eAidLL~~Ga~---------------~ll~~~Q~~sg~DL~~lliev~~~~~~~~~~~~~~rl~~l~~~~~~~~ 66 (260)
T PF04190_consen 2 KQKKYDEAIDLLYSGAL---------------ILLKHGQYGSGADLALLLIEVYEKSEDPVDEESIARLIELISLFPPEE 66 (260)
T ss_dssp HTT-HHHHHHHHHHHHH---------------HHHHTT-HHHHHHHHHHHHHHHHHTT---SHHHHHHHHHHHHHS-TT-
T ss_pred ccccHHHHHHHHHHHHH---------------HHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCc
Confidence 34566666666543322 23344444443333 333344566666666666666655443222
Q ss_pred -HHHHHHHHhHHHHhhhhhcCCCCcHHHHHHHHHHHHhcCChhhHHHHH
Q 044770 357 -EGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLF 404 (464)
Q Consensus 357 -~a~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 404 (464)
+-..+.+.+++-. +....-.-+......+...|.+.|++.+|..-|
T Consensus 67 p~r~~fi~~ai~WS--~~~~~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hf 113 (260)
T PF04190_consen 67 PERKKFIKAAIKWS--KFGSYKFGDPELHHLLAEKLWKEGNYYEAERHF 113 (260)
T ss_dssp TTHHHHHHHHHHHH--HTSS-TT--HHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred chHHHHHHHHHHHH--ccCCCCCCCHHHHHHHHHHHHhhccHHHHHHHH
Confidence 3455666666554 122333346677778999999999998887644
No 386
>PF13934 ELYS: Nuclear pore complex assembly
Probab=64.64 E-value=70 Score=26.89 Aligned_cols=105 Identities=14% Similarity=0.100 Sum_probs=0.0
Q ss_pred CCCCcchhhHHHHhhcCccChhchHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCCchhHHHHHHHHHhhcChHHHHHHh
Q 044770 6 RGEPVGSAFQSWMREGFPVHRGEIFHSINRLRKLQLNKRALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQGEKLF 85 (464)
Q Consensus 6 ~~~~~~~~l~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 85 (464)
+..+..+.++.+....+. +..-..+++++..+|+.+.|+.+++.+ .+...+......++.. ..++.+.+|..+-
T Consensus 90 D~~~~~~A~~~L~~ps~~--~~~~~~Il~~L~~~~~~~lAL~y~~~~---~p~l~s~~~~~~~~~~-La~~~v~EAf~~~ 163 (226)
T PF13934_consen 90 DHGDFEEALELLSHPSLI--PWFPDKILQALLRRGDPKLALRYLRAV---GPPLSSPEALTLYFVA-LANGLVTEAFSFQ 163 (226)
T ss_pred ChHhHHHHHHHhCCCCCC--cccHHHHHHHHHHCCChhHHHHHHHhc---CCCCCCHHHHHHHHHH-HHcCCHHHHHHHH
Q ss_pred hhcCCCCCchhHHHHHHHHHH----hhCcHHHHHHH
Q 044770 86 CCIPKDYQNELLYNNLVIACL----DKGVIKLSLEY 117 (464)
Q Consensus 86 ~~~~~~~~~~~~~~~li~~~~----~~~~~~~a~~~ 117 (464)
+..... .....+..++..+. +.+..++-+.+
T Consensus 164 R~~~~~-~~~~l~e~l~~~~~~~~~~~~~~~~Ll~L 198 (226)
T PF13934_consen 164 RSYPDE-LRRRLFEQLLEHCLEECARSGRLDELLSL 198 (226)
T ss_pred HhCchh-hhHHHHHHHHHHHHHHhhhhhHHHHHHhC
No 387
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=64.47 E-value=46 Score=23.19 Aligned_cols=58 Identities=17% Similarity=0.192 Sum_probs=37.4
Q ss_pred HHhcCChHHHHHHHHHhHHHHhhhhhcCCCC----cHHHHHHHHHHHHhcCChhhHHHHHHHHHH
Q 044770 349 CFKSNLVEEGFKALELGMKLITTKKVRSSTP----WLETTLSIIEIFAEKGDVGNAENLFEELKK 409 (464)
Q Consensus 349 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~p----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 409 (464)
..+.|++..|.+.+....+.... ....+ -....-.+.......|++++|...+++..+
T Consensus 8 ~~~~~dy~~A~d~L~~~fD~~~~---~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 8 ALRSGDYSEALDALHRYFDYAKQ---SNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhh---cccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 45678888887777777654321 22222 112223455566788999999999998874
No 388
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=64.39 E-value=16 Score=31.78 Aligned_cols=40 Identities=18% Similarity=0.319 Sum_probs=31.9
Q ss_pred hHHHHHHHHHHhhCcHHHHHHHHHHHHHcCCCCchhhHHH
Q 044770 96 LLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNR 135 (464)
Q Consensus 96 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ 135 (464)
.-|+..|....+.||+++|+.++++.++.|+.--..+|-.
T Consensus 258 ~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFik 297 (303)
T PRK10564 258 SYFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFIS 297 (303)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHHH
Confidence 4577999999999999999999999999987644444433
No 389
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=63.96 E-value=88 Score=26.32 Aligned_cols=146 Identities=12% Similarity=0.071 Sum_probs=80.6
Q ss_pred HHHHHhhccCChHHHHHHHHHHHhccccCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCccHHHHHHHHHHHHhcC
Q 044770 274 LAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSN 353 (464)
Q Consensus 274 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~ 353 (464)
..+..|.+.-++.-|-..++++.+ | ..+-.+ +--|.+..+..--.++.+-....++.-+......++ +...|
T Consensus 135 RtMEiyS~ttRFalaCN~s~KIiE----P-IQSRCA-iLRysklsd~qiL~Rl~~v~k~Ekv~yt~dgLeaii--fta~G 206 (333)
T KOG0991|consen 135 RTMEIYSNTTRFALACNQSEKIIE----P-IQSRCA-ILRYSKLSDQQILKRLLEVAKAEKVNYTDDGLEAII--FTAQG 206 (333)
T ss_pred HHHHHHcccchhhhhhcchhhhhh----h-HHhhhH-hhhhcccCHHHHHHHHHHHHHHhCCCCCcchHHHhh--hhccc
Confidence 345566666666666655555554 2 112222 222444433333333444334445554544444443 45678
Q ss_pred ChHHHHHHHHHhHHHHhh-----hhhcCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCcHHHHHHHHHHHHH
Q 044770 354 LVEEGFKALELGMKLITT-----KKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVK 428 (464)
Q Consensus 354 ~~~~a~~~~~~~~~~~~~-----~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~ 428 (464)
+..+|+.-++..+.-... .-+---.|.+.....++..+. .+++++|.+++.++-+.|+.|... .+.+.+.+-.
T Consensus 207 DMRQalNnLQst~~g~g~Vn~enVfKv~d~PhP~~v~~ml~~~~-~~~~~~A~~il~~lw~lgysp~Di-i~~~FRv~K~ 284 (333)
T KOG0991|consen 207 DMRQALNNLQSTVNGFGLVNQENVFKVCDEPHPLLVKKMLQACL-KRNIDEALKILAELWKLGYSPEDI-ITTLFRVVKN 284 (333)
T ss_pred hHHHHHHHHHHHhccccccchhhhhhccCCCChHHHHHHHHHHH-hccHHHHHHHHHHHHHcCCCHHHH-HHHHHHHHHh
Confidence 888888877766431100 011223566666566666554 579999999999999999987543 3445555444
Q ss_pred c
Q 044770 429 A 429 (464)
Q Consensus 429 ~ 429 (464)
.
T Consensus 285 ~ 285 (333)
T KOG0991|consen 285 M 285 (333)
T ss_pred c
Confidence 4
No 390
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=63.45 E-value=91 Score=26.32 Aligned_cols=118 Identities=10% Similarity=0.023 Sum_probs=63.5
Q ss_pred ccCChHHHHHHHHHHHhccccCCh-hhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCccHHHHHHH-HHHHHhcCChHHH
Q 044770 281 RIAQVSRAEELWLEMQSVKQLKAT-EQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHL-ALGCFKSNLVEEG 358 (464)
Q Consensus 281 ~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l-l~~~~~~~~~~~a 358 (464)
...+++.|...+.+... +.|+. .-|..=+.++.+..+++.+..=-+..++ +.||..--..+ ..++.....+++|
T Consensus 22 ~~k~y~~ai~~y~raI~--~nP~~~~Y~tnralchlk~~~~~~v~~dcrralq--l~~N~vk~h~flg~~~l~s~~~~ea 97 (284)
T KOG4642|consen 22 IPKRYDDAIDCYSRAIC--INPTVASYYTNRALCHLKLKHWEPVEEDCRRALQ--LDPNLVKAHYFLGQWLLQSKGYDEA 97 (284)
T ss_pred chhhhchHHHHHHHHHh--cCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHh--cChHHHHHHHHHHHHHHhhccccHH
Confidence 34455666665555554 33554 3445556666777777777666666555 56665443333 3345566677777
Q ss_pred HHHHHHhHHHHhhhhhcCCCCcHHHHHHHHHHHHhcCChhhHHHHHH
Q 044770 359 FKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFE 405 (464)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 405 (464)
+..+.++..+.. ...+.|-......|..+=-+.=...+..++.+
T Consensus 98 I~~Lqra~sl~r---~~~~~~~~di~~~L~~ak~~~w~v~e~~Ri~Q 141 (284)
T KOG4642|consen 98 IKVLQRAYSLLR---EQPFTFGDDIPKALRDAKKKRWEVSEEKRIRQ 141 (284)
T ss_pred HHHHHHHHHHHh---cCCCCCcchHHHHHHHHHhCccchhHHHHHHH
Confidence 777777754432 23334444444555554333333334444333
No 391
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=62.34 E-value=22 Score=22.46 Aligned_cols=26 Identities=19% Similarity=0.180 Sum_probs=15.0
Q ss_pred HHHHHHHHHhcChhhHHHHHHHHHHh
Q 044770 203 YCILATAHAVARLYTVAETYVEALEK 228 (464)
Q Consensus 203 ~~~li~~~~~~~~~~~a~~~~~~~~~ 228 (464)
.-.+|.++...|++++|.++++.+.+
T Consensus 26 hLqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 26 HLQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 33456666666666666666665543
No 392
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=62.28 E-value=49 Score=32.31 Aligned_cols=74 Identities=19% Similarity=0.159 Sum_probs=56.1
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHHcC--CCCcHHHHHHHHHHHHHcCCC-hhH----HHHHHHhCCCCCCHHHHHHHHHH
Q 044770 386 SIIEIFAEKGDVGNAENLFEELKKAN--YTKYTFVYNTLIKAYVKAKIN-DPN----LLRRMILGGARPDAETYSLLKLA 458 (464)
Q Consensus 386 ~li~~~~~~g~~~~A~~~~~~m~~~~--~~p~~~~~~~li~~~~~~g~~-a~~----~~~~m~~~~~~p~~~t~~~L~~~ 458 (464)
+|..+|...|++..+.++++.+...+ -+.=...||..|+.+.+.|.. -.+ .-+.+++.-+.-|..||.+|.++
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~ln~d~~t~all~~~ 112 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQARLNGDSLTYALLCQA 112 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhhcCCcchHHHHHHHh
Confidence 89999999999999999999988643 233355899999999999974 222 22334445688899999998765
Q ss_pred H
Q 044770 459 E 459 (464)
Q Consensus 459 ~ 459 (464)
.
T Consensus 113 s 113 (1117)
T COG5108 113 S 113 (1117)
T ss_pred h
Confidence 3
No 393
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=62.15 E-value=59 Score=25.00 Aligned_cols=42 Identities=2% Similarity=0.005 Sum_probs=18.9
Q ss_pred HHHHHHccCChhHHHHHHHHHHhCCCCCcHhHHHHHHHHHHh
Q 044770 171 LMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAV 212 (464)
Q Consensus 171 l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~ 212 (464)
+++.+.+.++.-.|.++|+++.+.+...+..|-...+..+..
T Consensus 26 vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e 67 (145)
T COG0735 26 VLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEE 67 (145)
T ss_pred HHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHH
Confidence 444444444445555555555554444444443333333333
No 394
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=62.05 E-value=47 Score=32.45 Aligned_cols=76 Identities=16% Similarity=0.187 Sum_probs=49.2
Q ss_pred HHHHHHHhcCChHHHHHHHHHhHHHHhhhhhcCCCCcHHHHHHHHHHHHhcCChh------hHHHHHHHHHHcCCCCcHH
Q 044770 344 HLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVG------NAENLFEELKKANYTKYTF 417 (464)
Q Consensus 344 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~------~A~~~~~~m~~~~~~p~~~ 417 (464)
+++.+|...|++.++.++++.... ...+-..-...||..|+...+.|.++ .|.+.++... +.-|..
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~-----~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~---ln~d~~ 104 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFID-----HNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQAR---LNGDSL 104 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhc-----CCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhh---cCCcch
Confidence 778888888888888888887743 23344445566777788888888754 3334444333 345677
Q ss_pred HHHHHHHHHH
Q 044770 418 VYNTLIKAYV 427 (464)
Q Consensus 418 ~~~~li~~~~ 427 (464)
||..|+.+-.
T Consensus 105 t~all~~~sl 114 (1117)
T COG5108 105 TYALLCQASL 114 (1117)
T ss_pred HHHHHHHhhc
Confidence 7777766544
No 395
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=61.92 E-value=44 Score=32.08 Aligned_cols=135 Identities=11% Similarity=0.035 Sum_probs=66.6
Q ss_pred CCcHhHHHHHHHHHHhc--ChhhHHHHHHHHHHhccCCCChhhHHHHHHHHHhhcChhhHHHHHHHhcc-CCCCchhhHH
Q 044770 197 EPNEVSYCILATAHAVA--RLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQE-LPNVRSKSYV 273 (464)
Q Consensus 197 ~p~~~~~~~li~~~~~~--~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~ 273 (464)
-|+..+..+++.-.... ...+.+-.++..| ++-..|-....|...-...-.|+...|.+.+..... .+........
T Consensus 568 ~~~~~~~k~~~~r~~~~~i~e~e~~~~~~~~~-~~~~~p~w~~ln~aglywr~~gn~~~a~~cl~~a~~~~p~~~~v~~v 646 (886)
T KOG4507|consen 568 MPDDHARKILLSRINNYTIPEEEIGSFLFHAI-NKPNAPIWLILNEAGLYWRAVGNSTFAIACLQRALNLAPLQQDVPLV 646 (886)
T ss_pred CchHHHHHHHHHHHhcccCcHHHHHHHHHHHh-cCCCCCeEEEeecccceeeecCCcHHHHHHHHHHhccChhhhcccHH
Confidence 45555555544333221 1122233333333 232334433333333333445666666665554433 3333333344
Q ss_pred HHHHHhhccCChHHHHHHHHHHHhccccCChhhHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 044770 274 LAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMN 333 (464)
Q Consensus 274 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 333 (464)
.|...+.+.|..-.|..++.+..... ...+-++-.+..++....+++.|++.|++..+.
T Consensus 647 ~la~~~~~~~~~~da~~~l~q~l~~~-~sepl~~~~~g~~~l~l~~i~~a~~~~~~a~~~ 705 (886)
T KOG4507|consen 647 NLANLLIHYGLHLDATKLLLQALAIN-SSEPLTFLSLGNAYLALKNISGALEAFRQALKL 705 (886)
T ss_pred HHHHHHHHhhhhccHHHHHHHHHhhc-ccCchHHHhcchhHHHHhhhHHHHHHHHHHHhc
Confidence 55555556666666666666555433 234445556666666666777777777666653
No 396
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=60.68 E-value=2.1e+02 Score=29.66 Aligned_cols=115 Identities=10% Similarity=0.055 Sum_probs=59.3
Q ss_pred HHHHHHHHHHhhCcHHHHHHHHHHHHHcCCCCc---hhhHHHHHHHhcCCCCc--ccHHHHHHHHHhCCCCCChhhHHH-
Q 044770 97 LYNNLVIACLDKGVIKLSLEYMKKMRVLGHSIS---YLVFNRLIILNSSPGRR--KTIPNILRQMKADKVAPHVSTFHI- 170 (464)
Q Consensus 97 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~---~~~~~~l~~~~~~~~~~--~~a~~~~~~~~~~~~~~~~~~~~~- 170 (464)
-|..|+..|...|+.++|+++|.+.....-.-| ...+-.++..+-+.+.. +-++++-+...+....-....+..
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~~~p~~gi~Ift~~ 585 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQLDGLEKIIEYLKKLGAENLDLILEYADWVLNKNPEAGIQIFTSE 585 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhcccchhHHHHHhhhhhccCchhheeeeecc
Confidence 488999999999999999999998876320011 12233344444443333 333333333333211000111111
Q ss_pred -----------HHHHHHccCChhHHHHHHHHHHhCCCCCcHhHHHHHHHHHH
Q 044770 171 -----------LMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHA 211 (464)
Q Consensus 171 -----------l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~ 211 (464)
-+-.|......+-+..+++.+....-.++..-.+.++..|+
T Consensus 586 ~~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~ 637 (877)
T KOG2063|consen 586 DKQEAESISRDDVLNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYL 637 (877)
T ss_pred ChhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHH
Confidence 12234455566666666666655443445555555555554
No 397
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=60.44 E-value=1.6e+02 Score=28.03 Aligned_cols=71 Identities=15% Similarity=0.069 Sum_probs=44.1
Q ss_pred CccChhchHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCCchhHHHHHHHHHhhcChHHHHHHhhhcCCCCC
Q 044770 22 FPVHRGEIFHSINRLRKLQLNKRALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQGEKLFCCIPKDYQ 93 (464)
Q Consensus 22 ~~~~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 93 (464)
.+.|...+...+.-+.+.+.+.+...+|..|...+|..|+..++.+.-. |-...+++.|+.+|.+.....|
T Consensus 101 f~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~we-fe~n~ni~saRalflrgLR~np 171 (568)
T KOG2396|consen 101 FNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWE-FEINLNIESARALFLRGLRFNP 171 (568)
T ss_pred cCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhH-HhhccchHHHHHHHHHHhhcCC
Confidence 3346666666776666666677777777777776666666665554432 2233347777777776655534
No 398
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=60.22 E-value=75 Score=27.14 Aligned_cols=62 Identities=19% Similarity=0.125 Sum_probs=38.9
Q ss_pred HHHHHHHhcCChHHHHHHHHHhHHHHhhhhhcCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHH
Q 044770 344 HLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEEL 407 (464)
Q Consensus 344 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 407 (464)
.+..-|.+.|++++|.++|+.+..... .+.-..+...+...+..++.+.|+.++...+.=++
T Consensus 183 ~~A~ey~~~g~~~~A~~~l~~~~~~yr--~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leL 244 (247)
T PF11817_consen 183 EMAEEYFRLGDYDKALKLLEPAASSYR--REGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLEL 244 (247)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHH--hCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 455567788888888888888743221 12223344555566777777778877776664443
No 399
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=59.71 E-value=78 Score=24.31 Aligned_cols=78 Identities=8% Similarity=0.004 Sum_probs=39.6
Q ss_pred HHHHHHHHhhcChHHHHHHhhhcCCC-------CCchhHHHHHHHHHHhhCc-HHHHHHHHHHHHHcCCCCchhhHHHHH
Q 044770 66 SYLLEFTIKNHGISQGEKLFCCIPKD-------YQNELLYNNLVIACLDKGV-IKLSLEYMKKMRVLGHSISYLVFNRLI 137 (464)
Q Consensus 66 ~~l~~~~~~~g~~~~a~~~~~~~~~~-------~~~~~~~~~li~~~~~~~~-~~~a~~~~~~m~~~~~~~~~~~~~~l~ 137 (464)
+.++.-....+++.-..++++.+... ..+...|+.++.+.++... ---+..+|.-|.+.+.+++..-|..++
T Consensus 43 N~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~li 122 (145)
T PF13762_consen 43 NCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCLI 122 (145)
T ss_pred HHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 45555555555555555555554221 1133445555555544444 223455555555555555666666666
Q ss_pred HHhcCC
Q 044770 138 ILNSSP 143 (464)
Q Consensus 138 ~~~~~~ 143 (464)
.++.+.
T Consensus 123 ~~~l~g 128 (145)
T PF13762_consen 123 KAALRG 128 (145)
T ss_pred HHHHcC
Confidence 555544
No 400
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=59.70 E-value=1.7e+02 Score=28.08 Aligned_cols=31 Identities=16% Similarity=0.197 Sum_probs=21.8
Q ss_pred HHHHHHHhhCcHHHHHHHHHHHHHcCCCCchh
Q 044770 100 NLVIACLDKGVIKLSLEYMKKMRVLGHSISYL 131 (464)
Q Consensus 100 ~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~ 131 (464)
.++.+. ..++++.|+.++..|...|..|...
T Consensus 249 ~li~si-~~~d~~~Al~~l~~ll~~Gedp~~i 279 (472)
T PRK14962 249 DYINAI-FNGDVKRVFTVLDDVYYSGKDYEVL 279 (472)
T ss_pred HHHHHH-HcCCHHHHHHHHHHHHHcCCCHHHH
Confidence 344433 5688888999988888888666544
No 401
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=59.08 E-value=1.3e+02 Score=26.52 Aligned_cols=171 Identities=12% Similarity=0.039 Sum_probs=77.5
Q ss_pred CChhhHHHHH-HHHHccCC-hhHHHHHHHHHHhCCCCCcHhHHHHHHHHHHhcChhhHHHHHHHHHHhccCCCChhhHHH
Q 044770 163 PHVSTFHILM-KIEANDHN-IEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDV 240 (464)
Q Consensus 163 ~~~~~~~~l~-~~~~~~~~-~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 240 (464)
|....++.|. +.+.+.|- ..-|.++|+..... ...+.++..+-+.+.-+.-+++ ++|+..+...
T Consensus 163 ~~~tvl~~L~~d~LVkeGi~l~F~~~lFk~~~~E------k~i~~lis~Lrkg~md~rLmef--------fPpnkrs~E~ 228 (412)
T KOG2297|consen 163 LPATVLQSLLNDNLVKEGIALSFAVKLFKEWLVE------KDINDLISSLRKGKMDDRLMEF--------FPPNKRSVEH 228 (412)
T ss_pred CCHHHHHHHHHhhHHHHhHHHHHHHHHHHHHHhh------ccHHHHHHHHHhcChHhHHHHh--------cCCcchhHHH
Confidence 3444444443 33444443 23466677766532 2345556555444443333333 5666666655
Q ss_pred HHHHHHhhcChhhHHHHHHHhccCCCCchhhHHHHHHHhhccCChHHHHHHHH-HHHhccccCChh----hHHHHHHHHH
Q 044770 241 LIILYGYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWL-EMQSVKQLKATE----QYNSVISVYC 315 (464)
Q Consensus 241 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~-~~~~~~~~~~~~----~~~~li~~~~ 315 (464)
+...+...|--+...-.-...... .....-..|..-..+...+++...... .|.+ ...|++. .|..++++
T Consensus 229 Fak~Ft~agL~elvey~~~q~~~~--a~kElq~~L~~q~s~e~p~~evi~~VKee~k~-~nlPe~eVi~ivWs~iMsa-- 303 (412)
T KOG2297|consen 229 FAKYFTDAGLKELVEYHRNQQSEG--ARKELQKELQEQVSEEDPVKEVILYVKEEMKR-NNLPETEVIGIVWSGIMSA-- 303 (412)
T ss_pred HHHHHhHhhHHHHHHHHHHHHHHH--HHHHHHHHHHHHhccCCCHHHHHHHHHHHHHh-cCCCCceEEeeeHhhhhHH--
Confidence 555555444222111100000000 000001122233333344555555444 4444 5556654 45555544
Q ss_pred hcCChhHHHHHHH-HHHhCCCCccHHHHHHHHHHHHhcCChHHHH
Q 044770 316 KNGFIDKASGLLK-EMSMNGCKPNAITYRHLALGCFKSNLVEEGF 359 (464)
Q Consensus 316 ~~~~~~~a~~~~~-~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~ 359 (464)
.+|.+-.++.. ..++ ...+|..++.+++..|+.+..+
T Consensus 304 --veWnKkeelva~qalr-----hlK~yaPLL~af~s~g~sEL~L 341 (412)
T KOG2297|consen 304 --VEWNKKEELVAEQALR-----HLKQYAPLLAAFCSQGQSELEL 341 (412)
T ss_pred --HhhchHHHHHHHHHHH-----HHHhhhHHHHHHhcCChHHHHH
Confidence 34433333222 1121 3456888999999999877654
No 402
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=58.93 E-value=29 Score=30.20 Aligned_cols=45 Identities=22% Similarity=0.197 Sum_probs=35.0
Q ss_pred cCCCCcHHH-HHHHHHHHHhcCChhhHHHHHHHHHHcCCCCcHHHH
Q 044770 375 RSSTPWLET-TLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVY 419 (464)
Q Consensus 375 ~~~~p~~~~-~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~ 419 (464)
..+.|+... |+.-|....+.||+++|+++++|..+.|+.--..+|
T Consensus 250 ~~v~~dTe~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tF 295 (303)
T PRK10564 250 EPMLNDTESYFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTF 295 (303)
T ss_pred CccCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHH
Confidence 345566555 679999999999999999999999999975433344
No 403
>PRK13342 recombination factor protein RarA; Reviewed
Probab=58.37 E-value=1.6e+02 Score=27.55 Aligned_cols=44 Identities=16% Similarity=0.135 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHc---CC-CCchhhHHHHHHHhcCCCCcccHHHHHHHHH
Q 044770 112 KLSLEYMKKMRVL---GH-SISYLVFNRLIILNSSPGRRKTIPNILRQMK 157 (464)
Q Consensus 112 ~~a~~~~~~m~~~---~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 157 (464)
++...++...... |+ ..+......++..+ .|+...+..+++.+.
T Consensus 154 e~i~~lL~~~l~~~~~~~i~i~~~al~~l~~~s--~Gd~R~aln~Le~~~ 201 (413)
T PRK13342 154 EDIEQLLKRALEDKERGLVELDDEALDALARLA--NGDARRALNLLELAA 201 (413)
T ss_pred HHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhC--CCCHHHHHHHHHHHH
Confidence 4445555544321 33 44444555554432 566666666666553
No 404
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=57.42 E-value=1.6e+02 Score=27.14 Aligned_cols=92 Identities=10% Similarity=-0.051 Sum_probs=53.2
Q ss_pred HHHHHHHhhccCChHHHHHHHHHHHhcc--ccCChhhHHHHHHHHHhcCChhHHHHHHHHHHhC---------CCCccHH
Q 044770 272 YVLAIEAFGRIAQVSRAEELWLEMQSVK--QLKATEQYNSVISVYCKNGFIDKASGLLKEMSMN---------GCKPNAI 340 (464)
Q Consensus 272 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~--~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~---------g~~p~~~ 340 (464)
+.-+.+.|..+|+++.|.+.+.+..+.- ....+..|-.+|..-.-.|+|........+.... -+.+-..
T Consensus 153 ~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~~kl~ 232 (466)
T KOG0686|consen 153 LEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVPAKLK 232 (466)
T ss_pred HHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcCcchH
Confidence 5567777888888888888888765421 1112334555555556667777777666666543 1233334
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHh
Q 044770 341 TYRHLALGCFKSNLVEEGFKALELG 365 (464)
Q Consensus 341 ~~~~ll~~~~~~~~~~~a~~~~~~~ 365 (464)
.+..+...+. +++..|.+.|=..
T Consensus 233 C~agLa~L~l--kkyk~aa~~fL~~ 255 (466)
T KOG0686|consen 233 CAAGLANLLL--KKYKSAAKYFLLA 255 (466)
T ss_pred HHHHHHHHHH--HHHHHHHHHHHhC
Confidence 4444444333 3666666665544
No 405
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=57.41 E-value=70 Score=23.08 Aligned_cols=26 Identities=15% Similarity=0.207 Sum_probs=12.1
Q ss_pred HHHHHHHhhccCChHHHHHHHHHHHh
Q 044770 272 YVLAIEAFGRIAQVSRAEELWLEMQS 297 (464)
Q Consensus 272 ~~~l~~~~~~~g~~~~a~~~~~~~~~ 297 (464)
|..|+..|...|..++|.+++.+..+
T Consensus 42 ~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 42 YQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred HHHHHHHHHccCccHHHHHHHHHHhc
Confidence 44444444444444444444444443
No 406
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=57.30 E-value=16 Score=23.11 Aligned_cols=22 Identities=23% Similarity=0.433 Sum_probs=10.0
Q ss_pred HHHHHHhhCcHHHHHHHHHHHH
Q 044770 101 LVIACLDKGVIKLSLEYMKKMR 122 (464)
Q Consensus 101 li~~~~~~~~~~~a~~~~~~m~ 122 (464)
+|.++...|++++|.+.++.+.
T Consensus 29 vI~gllqlg~~~~a~eYi~~~~ 50 (62)
T PF14689_consen 29 VIYGLLQLGKYEEAKEYIKELS 50 (62)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHH
Confidence 3444445555555554444443
No 407
>KOG2168 consensus Cullins [Cell cycle control, cell division, chromosome partitioning]
Probab=56.40 E-value=2.4e+02 Score=28.87 Aligned_cols=48 Identities=10% Similarity=0.236 Sum_probs=27.9
Q ss_pred HHHHHHHHHHH-----HhcCChhhHHHHHHHHHHcCCCCcHHHHHHHHHHHHHcC
Q 044770 381 LETTLSIIEIF-----AEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAK 430 (464)
Q Consensus 381 ~~~~~~li~~~-----~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g 430 (464)
..|++.|++.+ ...|.+++|.++++.+.--.. +...-..+...+.+.+
T Consensus 702 ~~t~~lLl~~~~~f~~y~~~~~e~aL~~le~l~LiP~--~~~~v~~~~~~~~~~~ 754 (835)
T KOG2168|consen 702 VKTLSLLLDLVSFFDLYHNGEWEEALSILEHLDLIPL--DPLSVDEIVANFRNLA 754 (835)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhccCC--ChhhhhHHHHHHHhcc
Confidence 34555555543 457888999888888776433 2333344444444444
No 408
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=56.14 E-value=2.3e+02 Score=28.59 Aligned_cols=189 Identities=14% Similarity=0.151 Sum_probs=97.3
Q ss_pred HHHHHHHHHHhccCCCC---hhhHHHHHHHHHhhcChhhHHHHHHHhccCCCCc--------hhhHHHHHHHhhccCChH
Q 044770 218 VAETYVEALEKSMTGNN---WSTLDVLIILYGYLAKGKDLERIWATVQELPNVR--------SKSYVLAIEAFGRIAQVS 286 (464)
Q Consensus 218 ~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--------~~~~~~l~~~~~~~g~~~ 286 (464)
+-..++.+|...--.|+ ..+...++-.|....+++...++.+.++..|..- ...|.-.++--.+-|+-+
T Consensus 181 ~l~~~L~~mR~RlDnp~VL~~d~V~nlmlSyRDvQdY~amirLVe~Lk~iP~t~~vve~~nv~f~YaFALNRRNr~GDRa 260 (1226)
T KOG4279|consen 181 QLNDYLDKMRTRLDNPDVLHPDTVSNLMLSYRDVQDYDAMIRLVEDLKRIPDTLKVVETHNVRFHYAFALNRRNRPGDRA 260 (1226)
T ss_pred HHHHHHHHHHhhcCCccccCHHHHHHHHhhhccccchHHHHHHHHHHHhCcchhhhhccCceEEEeeehhcccCCCccHH
Confidence 34456677766544444 3455566667777777888888888777654211 112333333344567888
Q ss_pred HHHHHHHHHHhcc--ccCChhhH-----HHH--HHHHHhcCChhHHHHHHHHHHhCCCCccHHH---HHHHHHHHHhcCC
Q 044770 287 RAEELWLEMQSVK--QLKATEQY-----NSV--ISVYCKNGFIDKASGLLKEMSMNGCKPNAIT---YRHLALGCFKSNL 354 (464)
Q Consensus 287 ~a~~~~~~~~~~~--~~~~~~~~-----~~l--i~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~---~~~ll~~~~~~~~ 354 (464)
+|+.+.-.+.+.. ..||..+. .-+ -+.|...+..+.|.++|++.-+ +.|+..+ +..|+.+-.+ .
T Consensus 261 kAL~~~l~lve~eg~vapDm~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFe--veP~~~sGIN~atLL~aaG~--~ 336 (1226)
T KOG4279|consen 261 KALNTVLPLVEKEGPVAPDMYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAFE--VEPLEYSGINLATLLRAAGE--H 336 (1226)
T ss_pred HHHHHHHHHHHhcCCCCCceeeeechhhhhhhhccCCcchhhHHHHHHHHHHHhc--cCchhhccccHHHHHHHhhh--h
Confidence 8888777776543 33443322 111 1233445667788999988876 5665533 3344433222 2
Q ss_pred hHHHHHHHHHhHHHHhhhhhcCCCCcHHHHHH---HHHHHHhcCChhhHHHHHHHHHHc
Q 044770 355 VEEGFKALELGMKLITTKKVRSSTPWLETTLS---IIEIFAEKGDVGNAENLFEELKKA 410 (464)
Q Consensus 355 ~~~a~~~~~~~~~~~~~~~~~~~~p~~~~~~~---li~~~~~~g~~~~A~~~~~~m~~~ 410 (464)
++...++-.-.+++..--.+.|.--....|.- .+.+-.-..++.+|.+.-+.|-+.
T Consensus 337 Fens~Elq~IgmkLn~LlgrKG~leklq~YWdV~~y~~asVLAnd~~kaiqAae~mfKL 395 (1226)
T KOG4279|consen 337 FENSLELQQIGMKLNSLLGRKGALEKLQEYWDVATYFEASVLANDYQKAIQAAEMMFKL 395 (1226)
T ss_pred ccchHHHHHHHHHHHHHhhccchHHHHHHHHhHHHhhhhhhhccCHHHHHHHHHHHhcc
Confidence 33333332222222111122222222222222 222223356777777777777664
No 409
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=55.23 E-value=2.4e+02 Score=28.49 Aligned_cols=190 Identities=15% Similarity=0.133 Sum_probs=98.4
Q ss_pred HHHHHhhhcCCC--CCc---hhHHHHHHHHHHhhCcHHHHHHHHHHHHHcCC------CCc-hhhHHHHHHHhcCCCCcc
Q 044770 80 QGEKLFCCIPKD--YQN---ELLYNNLVIACLDKGVIKLSLEYMKKMRVLGH------SIS-YLVFNRLIILNSSPGRRK 147 (464)
Q Consensus 80 ~a~~~~~~~~~~--~~~---~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~------~~~-~~~~~~l~~~~~~~~~~~ 147 (464)
+-...+.+|..+ .|+ ..+-..++-.|....+++..+++.+.+.+..- .++ ...|...++--.+.|+-+
T Consensus 181 ~l~~~L~~mR~RlDnp~VL~~d~V~nlmlSyRDvQdY~amirLVe~Lk~iP~t~~vve~~nv~f~YaFALNRRNr~GDRa 260 (1226)
T KOG4279|consen 181 QLNDYLDKMRTRLDNPDVLHPDTVSNLMLSYRDVQDYDAMIRLVEDLKRIPDTLKVVETHNVRFHYAFALNRRNRPGDRA 260 (1226)
T ss_pred HHHHHHHHHHhhcCCccccCHHHHHHHHhhhccccchHHHHHHHHHHHhCcchhhhhccCceEEEeeehhcccCCCccHH
Confidence 334455666555 333 34556677778888888888888888876310 001 122444444445667777
Q ss_pred cHHHHHHHHHhC--CCCCChhhH-----HHH--HHHHHccCChhHHHHHHHHHHhCCCCCcHhH---HHHHHHHHHhcCh
Q 044770 148 TIPNILRQMKAD--KVAPHVSTF-----HIL--MKIEANDHNIEGLMKVYSDMKRSEVEPNEVS---YCILATAHAVARL 215 (464)
Q Consensus 148 ~a~~~~~~~~~~--~~~~~~~~~-----~~l--~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~---~~~li~~~~~~~~ 215 (464)
+|+.+.-.+.+. .+.||.... .-+ -+.|...+..+.|.+.|++.-+. .|+..+ +..|+.+.. ..
T Consensus 261 kAL~~~l~lve~eg~vapDm~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFev--eP~~~sGIN~atLL~aaG--~~ 336 (1226)
T KOG4279|consen 261 KALNTVLPLVEKEGPVAPDMYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAFEV--EPLEYSGINLATLLRAAG--EH 336 (1226)
T ss_pred HHHHHHHHHHHhcCCCCCceeeeechhhhhhhhccCCcchhhHHHHHHHHHHHhcc--CchhhccccHHHHHHHhh--hh
Confidence 777777666553 345665432 111 12334455566777777776543 555433 333333322 12
Q ss_pred hhHHHHHHHHHHhccCCCChhhHHHHHHHHHhhcChhhHHHHHHHhccCCCCchhhHHHHHHHhhccCChHHHHHHHHHH
Q 044770 216 YTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEM 295 (464)
Q Consensus 216 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 295 (464)
++...+ ++.-|+ .|-..+++.|..+....+|+.. ..+.+-.-.+++.+|.+.-+.|
T Consensus 337 Fens~E----lq~Igm--------kLn~LlgrKG~leklq~YWdV~------------~y~~asVLAnd~~kaiqAae~m 392 (1226)
T KOG4279|consen 337 FENSLE----LQQIGM--------KLNSLLGRKGALEKLQEYWDVA------------TYFEASVLANDYQKAIQAAEMM 392 (1226)
T ss_pred ccchHH----HHHHHH--------HHHHHhhccchHHHHHHHHhHH------------HhhhhhhhccCHHHHHHHHHHH
Confidence 222211 122221 1223446666666666666532 2333334456666666666666
Q ss_pred Hh
Q 044770 296 QS 297 (464)
Q Consensus 296 ~~ 297 (464)
.+
T Consensus 393 fK 394 (1226)
T KOG4279|consen 393 FK 394 (1226)
T ss_pred hc
Confidence 65
No 410
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=54.72 E-value=1.4e+02 Score=31.47 Aligned_cols=201 Identities=8% Similarity=0.081 Sum_probs=0.0
Q ss_pred ChhchHHHHHHHHhhcchHHHHHHHHHHHHcCCC--CCCchhHHHHHHHHHhh-cChHHHHHHhhhcCCCCCchhHHHHH
Q 044770 25 HRGEIFHSINRLRKLQLNKRALEVMEWVIRERPY--RPKELDYSYLLEFTIKN-HGISQGEKLFCCIPKDYQNELLYNNL 101 (464)
Q Consensus 25 ~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~-g~~~~a~~~~~~~~~~~~~~~~~~~l 101 (464)
.+......++.+...++|.+|..+.+.-+-..++ ..++..+-.=+..+.++ ++.+..-..+..+.....+...|...
T Consensus 693 PR~LVL~~ir~~Ld~~~Y~~Af~~~RkhRIdlNll~Dh~p~~Fl~ni~~Fv~qi~~~~~lnLFls~L~~EDvt~tmY~~~ 772 (928)
T PF04762_consen 693 PRALVLAGIRKLLDAKDYKEAFELCRKHRIDLNLLYDHNPEQFLENIELFVEQIKDVDYLNLFLSSLRNEDVTKTMYKDT 772 (928)
T ss_pred cHhHHHHHHHHHHhhccHHHHHHHHHHhccccceEEECCHHHHHHHHHHHHHhcCCHHHHHHHHHhcccccccccccccc
Q ss_pred H------------HHHHhhCcHHHHHHHHHHHHHcCCCCchhhHHHHHHHhcCCC--CcccHHHHHHHHHhCCCCCChhh
Q 044770 102 V------------IACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPG--RRKTIPNILRQMKADKVAPHVST 167 (464)
Q Consensus 102 i------------~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~ 167 (464)
. ......++.+..=+.+...... ..-...-+..++.+|++.+ ++++|+....++.+.+...-...
T Consensus 773 ~~~~~~~~~~~~~~~~~~~~KVn~ICdair~~l~~-~~~~~~~l~~IlTa~vkk~Pp~le~aL~~I~~l~~~~~~~ae~a 851 (928)
T PF04762_consen 773 YPPSSEAQPNSNSSTASSESKVNKICDAIRKALEK-PKDKDKYLQPILTAYVKKSPPDLEEALQLIKELREEDPESAEEA 851 (928)
T ss_pred cccccccccccccCCCccccHHHHHHHHHHHHhcc-cccchhhHHHHHHHHHhcCchhHHHHHHHHHHHHhcChHHHHHH
Q ss_pred HHHHHHHHHccCChhHHHHHHH----HHHhCCCCCcHhHHHHHHHHHHhc-------------ChhhHHHHHHHHH
Q 044770 168 FHILMKIEANDHNIEGLMKVYS----DMKRSEVEPNEVSYCILATAHAVA-------------RLYTVAETYVEAL 226 (464)
Q Consensus 168 ~~~l~~~~~~~~~~~~a~~~~~----~m~~~~~~p~~~~~~~li~~~~~~-------------~~~~~a~~~~~~~ 226 (464)
...|+-.---..-++.|+.+|+ .|....-+.|+.-|-..++-+-+. +++++|++-+.++
T Consensus 852 lkyl~fLvDvn~Ly~~ALG~YDl~Lal~VAq~SQkDPKEYLPfL~~L~~l~~~~rry~ID~hLkRy~kAL~~L~~~ 927 (928)
T PF04762_consen 852 LKYLCFLVDVNKLYDVALGTYDLELALMVAQQSQKDPKEYLPFLQELQKLPPLYRRYKIDDHLKRYEKALRHLSAC 927 (928)
T ss_pred HhHheeeccHHHHHHHHhhhcCHHHHHHHHHHhccChHHHHHHHHHHHhCChhheeeeHhhhhCCHHHHHHHHHhh
No 411
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=53.93 E-value=84 Score=27.59 Aligned_cols=71 Identities=8% Similarity=0.276 Sum_probs=52.4
Q ss_pred HHHHHHHHhCCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCcHhHHHHHHHHHHh----------cChhhHH
Q 044770 150 PNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAV----------ARLYTVA 219 (464)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~----------~~~~~~a 219 (464)
.++++.+...++.|.-.++.-+.-.+.+.=.+.+++.+|+.+.. |..-|..++..||. .|++..-
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~s-----D~~rfd~Ll~iCcsmlil~Re~il~~DF~~n 337 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLS-----DPQRFDFLLYICCSMLILVRERILEGDFTVN 337 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhc-----ChhhhHHHHHHHHHHHHHHHHHHHhcchHHH
Confidence 56788888888888888887777777888888888888888874 33346666666653 4777777
Q ss_pred HHHHHH
Q 044770 220 ETYVEA 225 (464)
Q Consensus 220 ~~~~~~ 225 (464)
+++++.
T Consensus 338 mkLLQ~ 343 (370)
T KOG4567|consen 338 MKLLQN 343 (370)
T ss_pred HHHHhc
Confidence 776654
No 412
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=52.31 E-value=86 Score=22.56 Aligned_cols=78 Identities=12% Similarity=0.127 Sum_probs=39.0
Q ss_pred hhhHHHHHHHhccCCCCchhhHHHHHHHhhccCChHHHHHHHHHHHhccccCChhhHHHHHHHHHhcCChhHHHHHHHHH
Q 044770 251 GKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEM 330 (464)
Q Consensus 251 ~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m 330 (464)
.++|..+.+.+...+.....+-..-+..+.+.|+++.| +..-. ....||...|-++ +-.+.|-.+++...+.++
T Consensus 22 H~EA~tIa~wL~~~~~~~E~v~lIr~~sLmNrG~Yq~A---Ll~~~-~~~~pdL~p~~AL--~a~klGL~~~~e~~l~rl 95 (116)
T PF09477_consen 22 HQEANTIADWLEQEGEMEEVVALIRLSSLMNRGDYQEA---LLLPQ-CHCYPDLEPWAAL--CAWKLGLASALESRLTRL 95 (116)
T ss_dssp HHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHTT-HHHH---HHHHT-TS--GGGHHHHHH--HHHHCT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhhHHHHHH---HHhcc-cCCCccHHHHHHH--HHHhhccHHHHHHHHHHH
Confidence 44455555555444443332333344556677777777 22112 2344666666544 335667777777777776
Q ss_pred HhCC
Q 044770 331 SMNG 334 (464)
Q Consensus 331 ~~~g 334 (464)
..+|
T Consensus 96 a~~g 99 (116)
T PF09477_consen 96 ASSG 99 (116)
T ss_dssp CT-S
T ss_pred HhCC
Confidence 6654
No 413
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=51.67 E-value=1.2e+02 Score=29.34 Aligned_cols=20 Identities=10% Similarity=0.022 Sum_probs=12.0
Q ss_pred CcHHHHHHHHHHHHHcCCCC
Q 044770 109 GVIKLSLEYMKKMRVLGHSI 128 (464)
Q Consensus 109 ~~~~~a~~~~~~m~~~~~~~ 128 (464)
++.+.++.++++|...|..|
T Consensus 259 ~d~~~~l~~~~~l~~~g~~~ 278 (509)
T PRK14958 259 KAGDRLLGCVTRLVEQGVDF 278 (509)
T ss_pred CCHHHHHHHHHHHHHcCCCH
Confidence 55666666666666665544
No 414
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=51.50 E-value=2.2e+02 Score=27.09 Aligned_cols=90 Identities=9% Similarity=0.022 Sum_probs=42.5
Q ss_pred HHHHHHHHhhcChhhHHHHHHHhccCCCCchhhHHHHHHHh---hccCChHHHHHHHHHHHhccccCChhhHHHHHHHHH
Q 044770 239 DVLIILYGYLAKGKDLERIWATVQELPNVRSKSYVLAIEAF---GRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYC 315 (464)
Q Consensus 239 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~---~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 315 (464)
+.++..+...+-..+|..++..+...|+++...|..+|..= ..+| ...+..+++.+...-. .|+..|-..+.--.
T Consensus 464 s~~l~~~~e~~~~~~ark~y~~l~~lpp~sl~l~r~miq~e~~~~sc~-l~~~r~~yd~a~~~fg-~d~~lw~~y~~~e~ 541 (568)
T KOG2396|consen 464 SKYLDWAYESGGYKKARKVYKSLQELPPFSLDLFRKMIQFEKEQESCN-LANIREYYDRALREFG-ADSDLWMDYMKEEL 541 (568)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHhCCCccHHHHHHHHHHHhhHhhcC-chHHHHHHHHHHHHhC-CChHHHHHHHHhhc
Confidence 34455555555666666666666665555554444444321 1122 4444555555443211 34444444444434
Q ss_pred hcCChhHHHHHHHHH
Q 044770 316 KNGFIDKASGLLKEM 330 (464)
Q Consensus 316 ~~~~~~~a~~~~~~m 330 (464)
..|..+.+-.++.+.
T Consensus 542 ~~g~~en~~~~~~ra 556 (568)
T KOG2396|consen 542 PLGRPENCGQIYWRA 556 (568)
T ss_pred cCCCcccccHHHHHH
Confidence 445544444444443
No 415
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=51.47 E-value=2.2e+02 Score=27.04 Aligned_cols=107 Identities=17% Similarity=0.055 Sum_probs=65.6
Q ss_pred HhhccCChHHHHHHHHHHHh---ccccCC-----hhhHHHHHHHHHhcCChhHHHHHHHHHH-------hCCCCccH---
Q 044770 278 AFGRIAQVSRAEELWLEMQS---VKQLKA-----TEQYNSVISVYCKNGFIDKASGLLKEMS-------MNGCKPNA--- 339 (464)
Q Consensus 278 ~~~~~g~~~~a~~~~~~~~~---~~~~~~-----~~~~~~li~~~~~~~~~~~a~~~~~~m~-------~~g~~p~~--- 339 (464)
.+.-.|++.+|.+++...-- .|...+ -..||.|...+.+.|.+..+..+|.... ..|++|..
T Consensus 249 ~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~t 328 (696)
T KOG2471|consen 249 LEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFT 328 (696)
T ss_pred HHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCccee
Confidence 34457889999888765331 222222 2234666666666777776666666655 35666532
Q ss_pred --------HHHHHHHHHHHhcCChHHHHHHHHHhHHHHhhhhhcCCCCcHHHHHHHHHHHHh
Q 044770 340 --------ITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAE 393 (464)
Q Consensus 340 --------~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~ 393 (464)
.+||. .-.+...|++-.|.+.|..+++ -+..++..|-.|..+|..
T Consensus 329 ls~nks~eilYNc-G~~~Lh~grPl~AfqCf~~av~--------vfh~nPrlWLRlAEcCim 381 (696)
T KOG2471|consen 329 LSQNKSMEILYNC-GLLYLHSGRPLLAFQCFQKAVH--------VFHRNPRLWLRLAECCIM 381 (696)
T ss_pred hhcccchhhHHhh-hHHHHhcCCcHHHHHHHHHHHH--------HHhcCcHHHHHHHHHHHH
Confidence 22332 3346788999999999999863 234455566677777753
No 416
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=51.43 E-value=2e+02 Score=26.53 Aligned_cols=56 Identities=13% Similarity=0.106 Sum_probs=23.9
Q ss_pred HHHHHHHHhhcChHHHHHHhhhcCCC----CCchhHHHHHHHHHHhhCcHHHHHHHHHHH
Q 044770 66 SYLLEFTIKNHGISQGEKLFCCIPKD----YQNELLYNNLVIACLDKGVIKLSLEYMKKM 121 (464)
Q Consensus 66 ~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~~~~~~li~~~~~~~~~~~a~~~~~~m 121 (464)
.-+...|..+|+++.|.+.+.+...- ......|-.+|..-.-.|+|........+.
T Consensus 154 ~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A 213 (466)
T KOG0686|consen 154 EDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKA 213 (466)
T ss_pred HHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHH
Confidence 34444455555555555555543221 011233444444444444444444444333
No 417
>PHA03100 ankyrin repeat protein; Provisional
Probab=51.11 E-value=2.3e+02 Score=27.08 Aligned_cols=23 Identities=4% Similarity=0.118 Sum_probs=11.2
Q ss_pred HhcCCCCcccHHHHHHHHHhCCCCCCh
Q 044770 139 LNSSPGRRKTIPNILRQMKADKVAPHV 165 (464)
Q Consensus 139 ~~~~~~~~~~a~~~~~~~~~~~~~~~~ 165 (464)
..++.|+. ++++.+.+.|..|+.
T Consensus 41 ~A~~~~~~----~ivk~Ll~~g~~~~~ 63 (480)
T PHA03100 41 LAKEARNI----DVVKILLDNGADINS 63 (480)
T ss_pred hhhccCCH----HHHHHHHHcCCCCCC
Confidence 34444443 344444555655554
No 418
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=51.04 E-value=1.7e+02 Score=25.63 Aligned_cols=69 Identities=9% Similarity=-0.001 Sum_probs=48.3
Q ss_pred HHHHHHHhhccCChHHHHHHHHHHHhccccCChhhHHHHHHHHHhcCChhHHHHHHHHHHh-----CCCCccHHH
Q 044770 272 YVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSM-----NGCKPNAIT 341 (464)
Q Consensus 272 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~-----~g~~p~~~~ 341 (464)
+......|..+|.+.+|.++-++.... .+.+...|-.++..++..|+--.+..-++.+.+ .|+..|...
T Consensus 282 lgkva~~yle~g~~neAi~l~qr~ltl-dpL~e~~nk~lm~~la~~gD~is~~khyerya~vleaelgi~vddsi 355 (361)
T COG3947 282 LGKVARAYLEAGKPNEAIQLHQRALTL-DPLSEQDNKGLMASLATLGDEISAIKHYERYAEVLEAELGIDVDDSI 355 (361)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhc-ChhhhHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHhCCCcchhH
Confidence 444556778888888888888887763 334667788888888888887777777766643 455555443
No 419
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=50.96 E-value=2.9e+02 Score=28.32 Aligned_cols=31 Identities=23% Similarity=0.058 Sum_probs=21.1
Q ss_pred HHHHHHHHHhhCcHHHHHHHHHHHHHcCCCCc
Q 044770 98 YNNLVIACLDKGVIKLSLEYMKKMRVLGHSIS 129 (464)
Q Consensus 98 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~ 129 (464)
...++..+ ..+++.+++.+++++...|..+.
T Consensus 249 i~~ll~aL-~~~d~~~~l~~~~~l~~~g~~~~ 279 (830)
T PRK07003 249 MVRLLDAL-AAGDGPEILAVADEMALRSLSFS 279 (830)
T ss_pred HHHHHHHH-HcCCHHHHHHHHHHHHHhCCCHH
Confidence 44445543 34788888888888888776543
No 420
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=50.73 E-value=1.2e+02 Score=24.13 Aligned_cols=62 Identities=11% Similarity=-0.068 Sum_probs=44.9
Q ss_pred HHhccccCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCccHHHHHHHHHHHHhcCChHH
Q 044770 295 MQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEE 357 (464)
Q Consensus 295 ~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~ 357 (464)
+.+.|..++. .-..++..+...++.-.|.++++.+.+.+..++..|....|..+...|-+.+
T Consensus 17 L~~~GlR~T~-qR~~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Glv~~ 78 (169)
T PRK11639 17 CAQRNVRLTP-QRLEVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGFVHK 78 (169)
T ss_pred HHHcCCCCCH-HHHHHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCCEEE
Confidence 4455655443 3445666666667777899999999998888888888888888888875543
No 421
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=50.72 E-value=2.3e+02 Score=26.94 Aligned_cols=371 Identities=11% Similarity=0.066 Sum_probs=195.8
Q ss_pred hcchHHHHHHHHHHHHcCCCCCCc-----hhHHHHHHHHHhhc-ChHHHHHHhhhcCCCCCchhHHH-----HHHHHHHh
Q 044770 39 LQLNKRALEVMEWVIRERPYRPKE-----LDYSYLLEFTIKNH-GISQGEKLFCCIPKDYQNELLYN-----NLVIACLD 107 (464)
Q Consensus 39 ~~~~~~A~~~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~-----~li~~~~~ 107 (464)
..+++.|..-++.......--|+. .+++.|.+.+.... .+..++.++.+..+...+...|. .|+..+.-
T Consensus 60 T~N~elAksHLekA~~i~~~ip~fydvKf~a~SlLa~lh~~~~~s~~~~KalLrkaielsq~~p~wsckllfQLaql~~i 139 (629)
T KOG2300|consen 60 TKNVELAKSHLEKAWLISKSIPSFYDVKFQAASLLAHLHHQLAQSFPPAKALLRKAIELSQSVPYWSCKLLFQLAQLHII 139 (629)
T ss_pred hccHHHHHHHHHHHHHHHcccccHHhhhhHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhh
Confidence 457888888887765433223333 45677777777666 78888888887665533333443 45666777
Q ss_pred hCcHHHHHHHHHHHHHcCCCCchhhHHHHHHH------hcCCCCcccHHHHH---HHHHhCCCCCChhh-------H-HH
Q 044770 108 KGVIKLSLEYMKKMRVLGHSISYLVFNRLIIL------NSSPGRRKTIPNIL---RQMKADKVAPHVST-------F-HI 170 (464)
Q Consensus 108 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~------~~~~~~~~~a~~~~---~~~~~~~~~~~~~~-------~-~~ 170 (464)
..++..|.+++.---+. ..+-...|..++-. .....+..++.++. .+|.+. ..+|... | +.
T Consensus 140 dkD~~sA~elLavga~s-Ad~~~~~ylr~~ftls~~~ll~me~d~~dV~~ll~~~~qi~~n-~~sdk~~~E~LkvFyl~l 217 (629)
T KOG2300|consen 140 DKDFPSALELLAVGAES-ADHICFPYLRMLFTLSMLMLLIMERDDYDVEKLLQRCGQIWQN-ISSDKTQKEMLKVFYLVL 217 (629)
T ss_pred hccchhHHHHHhccccc-cchhhhHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhc-cCCChHHHHHHHHHHHHH
Confidence 88899998885322221 12222333332222 12223444444444 444443 3455332 1 22
Q ss_pred HHHHHHccCChhHHHHHHHHHHhC---CC------------CCcHhHHHHHHH----HH---------HhcChhhHHHHH
Q 044770 171 LMKIEANDHNIEGLMKVYSDMKRS---EV------------EPNEVSYCILAT----AH---------AVARLYTVAETY 222 (464)
Q Consensus 171 l~~~~~~~~~~~~a~~~~~~m~~~---~~------------~p~~~~~~~li~----~~---------~~~~~~~~a~~~ 222 (464)
-+..|.-.|+...+...++++... +- .|....+..+.+ ++ ...|-+++|.++
T Consensus 218 ql~yy~~~gq~rt~k~~lkQLQ~siqtist~~~~h~e~ilgsps~~l~~wlpkeqicaLV~l~tv~hsm~~gy~~~~~K~ 297 (629)
T KOG2300|consen 218 QLSYYLLPGQVRTVKPALKQLQDSIQTISTSSRGHDEKILGSPSPILFEWLPKEQICALVYLVTVIHSMPAGYFKKAQKY 297 (629)
T ss_pred HHHHHhcccchhhhHHHHHHHHHHHhccCCCCCCccccccCCCChHHHhhccHhhhHhhhhhhHHhhhhhhHHHHHHHHH
Confidence 234456678888877777776431 11 223333322222 11 134556666666
Q ss_pred HHHHHhcc----CCC-ChhhH--------HHHHHHHHhhcChhhHHHHHHHhcc----CCCCch-----hhHHHHHH-Hh
Q 044770 223 VEALEKSM----TGN-NWSTL--------DVLIILYGYLAKGKDLERIWATVQE----LPNVRS-----KSYVLAIE-AF 279 (464)
Q Consensus 223 ~~~~~~~~----~~~-~~~~~--------~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~~-----~~~~~l~~-~~ 279 (464)
-+++...- -.+ ....+ ..++.+-.-.|++.+|++-...|.+ .+.+.. .....++. -+
T Consensus 298 tDe~i~q~eklkq~d~~srilsm~km~~LE~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys 377 (629)
T KOG2300|consen 298 TDEAIKQTEKLKQADLMSRILSMFKMILLEHIVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYS 377 (629)
T ss_pred HHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHh
Confidence 55553321 111 11122 2222223446888888888777766 222111 11122333 33
Q ss_pred hccCChHHHHHHHHHHHhccccCChhhH--HHHHHHHHhcCChhHHHHHHHHHHhCCCCccHHHHHH--------HHHH-
Q 044770 280 GRIAQVSRAEELWLEMQSVKQLKATEQY--NSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRH--------LALG- 348 (464)
Q Consensus 280 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~--~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~--------ll~~- 348 (464)
+..+.++.|+.-|....+.--..|...+ ..+...|.+.|+.+.-.++++..-- |+..++.+ ++.+
T Consensus 378 ~sv~~~enAe~hf~~a~k~t~~~dl~a~~nlnlAi~YL~~~~~ed~y~~ld~i~p----~nt~s~ssq~l~a~~~~v~gl 453 (629)
T KOG2300|consen 378 HSVNCYENAEFHFIEATKLTESIDLQAFCNLNLAISYLRIGDAEDLYKALDLIGP----LNTNSLSSQRLEASILYVYGL 453 (629)
T ss_pred hhcchHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHHHHhccHHHHHHHHHhcCC----CCCCcchHHHHHHHHHHHHHH
Confidence 4578899999998877764333343333 3345678888877666666655432 22222211 1222
Q ss_pred -HHhcCChHHHHHHHHHhHHHHhhhhhcCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHHH-cCCCCcHH
Q 044770 349 -CFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKK-ANYTKYTF 417 (464)
Q Consensus 349 -~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~~~~p~~~ 417 (464)
....+++.+|..++.+.++..+. ..-.+...-....|...+...|+..++.++..-..+ ..-.||.+
T Consensus 454 faf~qn~lnEaK~~l~e~Lkmana--ed~~rL~a~~LvLLs~v~lslgn~~es~nmvrpamqlAkKi~Di~ 522 (629)
T KOG2300|consen 454 FAFKQNDLNEAKRFLRETLKMANA--EDLNRLTACSLVLLSHVFLSLGNTVESRNMVRPAMQLAKKIPDIP 522 (629)
T ss_pred HHHHhccHHHHHHHHHHHHhhcch--hhHHHHHHHHHHHHHHHHHHhcchHHHHhccchHHHHHhcCCCch
Confidence 24679999999999998765432 111222223334555666778999998887764332 11236654
No 422
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=50.64 E-value=56 Score=19.90 Aligned_cols=39 Identities=15% Similarity=0.112 Sum_probs=26.5
Q ss_pred hHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCCchhHHHHHH
Q 044770 29 IFHSINRLRKLQLNKRALEVMEWVIRERPYRPKELDYSYLLE 70 (464)
Q Consensus 29 ~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~ 70 (464)
+..+.-++.+.|+++.|++..+.+.+ +.|+......|-.
T Consensus 4 lY~lAig~ykl~~Y~~A~~~~~~lL~---~eP~N~Qa~~L~~ 42 (53)
T PF14853_consen 4 LYYLAIGHYKLGEYEKARRYCDALLE---IEPDNRQAQSLKE 42 (53)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHH---HTTS-HHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHh---hCCCcHHHHHHHH
Confidence 34566677889999999999999888 3666655554443
No 423
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=50.27 E-value=49 Score=24.29 Aligned_cols=51 Identities=8% Similarity=-0.011 Sum_probs=38.4
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCccHHHHHHHHHHHHhcCChHH
Q 044770 307 YNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEE 357 (464)
Q Consensus 307 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~ 357 (464)
-..++..+...+..-.|.++++.+.+.|...+..|...-+..+...|-+..
T Consensus 10 R~~Il~~l~~~~~~~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gli~~ 60 (120)
T PF01475_consen 10 RLAILELLKESPEHLTAEEIYDKLRKKGPRISLATVYRTLDLLEEAGLIRK 60 (120)
T ss_dssp HHHHHHHHHHHSSSEEHHHHHHHHHHTTTT--HHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHcCCCCCCHHHHHHHhhhccCCcCHHHHHHHHHHHHHCCeEEE
Confidence 455667777777788899999999998888888888888888888775543
No 424
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=50.18 E-value=56 Score=20.96 Aligned_cols=49 Identities=14% Similarity=0.087 Sum_probs=27.7
Q ss_pred CCChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCcHhHHHHHHHHHH
Q 044770 162 APHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHA 211 (464)
Q Consensus 162 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~ 211 (464)
.|....++.+++.+++..-.++++..+.+..++|. .+..+|---++.++
T Consensus 5 ~~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g~-I~~d~~lK~vR~La 53 (65)
T PF09454_consen 5 VAEDPLSNQLYELVAEDHAIEDTIYYLDRALQRGS-IDLDTFLKQVRSLA 53 (65)
T ss_dssp E-SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-S-HHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHH
Confidence 45555666666666666666666666666666653 24444444444443
No 425
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=50.18 E-value=90 Score=30.09 Aligned_cols=30 Identities=7% Similarity=-0.007 Sum_probs=22.2
Q ss_pred HHHHHHHHhhCcHHHHHHHHHHHHHcCCCCc
Q 044770 99 NNLVIACLDKGVIKLSLEYMKKMRVLGHSIS 129 (464)
Q Consensus 99 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~ 129 (464)
..++.+. ..|+...|+.+++++...|..|.
T Consensus 262 f~L~~ai-~~~d~~~Al~~l~~L~~~g~~~~ 291 (507)
T PRK06645 262 IEFVEYI-IHRETEKAINLINKLYGSSVNLE 291 (507)
T ss_pred HHHHHHH-HcCCHHHHHHHHHHHHHcCCCHH
Confidence 3444444 45899999999999999887654
No 426
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=49.78 E-value=56 Score=23.77 Aligned_cols=49 Identities=14% Similarity=0.052 Sum_probs=36.6
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCCCccHHHHHHHHHHHHhcCChHH
Q 044770 309 SVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEE 357 (464)
Q Consensus 309 ~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~ 357 (464)
.++..+...+..-.|.++++.+.+.+..++..|....+..+...|-+.+
T Consensus 5 ~Il~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gli~~ 53 (116)
T cd07153 5 AILEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGLVRE 53 (116)
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCEEE
Confidence 3455555566667788899999888877788888888888888776543
No 427
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=47.59 E-value=1.7e+02 Score=24.53 Aligned_cols=66 Identities=11% Similarity=0.059 Sum_probs=30.6
Q ss_pred CCCCchhHHHHHHHHHhhcChHHHHHHhhhcCCC-C--CchhHH--HHHHHHHHhhCcHHHHHHHHHHHHH
Q 044770 58 YRPKELDYSYLLEFTIKNHGISQGEKLFCCIPKD-Y--QNELLY--NNLVIACLDKGVIKLSLEYMKKMRV 123 (464)
Q Consensus 58 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~--~~~~~~--~~li~~~~~~~~~~~a~~~~~~m~~ 123 (464)
+.+.....+.|+--|.-...+.+|.+.|..-... + .+...+ ..-|......|+.++|++..+.+-.
T Consensus 22 ~~~~~~d~n~LVmnylv~eg~~EaA~~Fa~e~~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~P 92 (228)
T KOG2659|consen 22 VSVMREDLNRLVMNYLVHEGYVEAAEKFAKESGIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLNP 92 (228)
T ss_pred cCcchhhHHHHHHHHHHhccHHHHHHHhccccCCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhCh
Confidence 3444444455444444444444444444433222 1 122222 2344555666666666666665543
No 428
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=47.35 E-value=2.8e+02 Score=27.01 Aligned_cols=150 Identities=12% Similarity=0.045 Sum_probs=0.0
Q ss_pred chHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCCchhHHHHHHHHH-hhcChHHHHHHhhhcCCC----CCchhHHHHHH
Q 044770 28 EIFHSINRLRKLQLNKRALEVMEWVIRERPYRPKELDYSYLLEFTI-KNHGISQGEKLFCCIPKD----YQNELLYNNLV 102 (464)
Q Consensus 28 ~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~a~~~~~~~~~~----~~~~~~~~~li 102 (464)
++..-++.+.+.|-+..|.+..+-+.+ ..-.-|+.....+|+.|+ ++.++...+++++..... .-....|...+
T Consensus 344 ~l~r~m~~l~~RGC~rTA~E~cKllls-Ldp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~n~l~~~PN~~yS~Al 422 (665)
T KOG2422|consen 344 ALFRYMQSLAQRGCWRTALEWCKLLLS-LDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENMNKLSQLPNFGYSLAL 422 (665)
T ss_pred HHHHHHHHHHhcCChHHHHHHHHHHhh-cCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhhccHhhcCCchHHHHH
Q ss_pred HHHHhhCcHHHHHHHHHHHHHcCCCCchhhHHHHHHHhcCCCCcccHHHHHHHHHhCCCCCChhhHHHHHHHHHccCC
Q 044770 103 IACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHN 180 (464)
Q Consensus 103 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 180 (464)
.-+.-.++-+.+.+.-.......+.--+.+.+-|+..+.-. .+.+...+.-....--.+...++..++..|+...+
T Consensus 423 A~f~l~~~~~~~rqsa~~~l~qAl~~~P~vl~eLld~~~l~--~da~~~~~k~~~~~a~~~e~pal~~lv~lY~~r~~ 498 (665)
T KOG2422|consen 423 ARFFLRKNEEDDRQSALNALLQALKHHPLVLSELLDELLLG--DDALTKDLKFDGSSAENSELPALMLLVKLYANRNE 498 (665)
T ss_pred HHHHHhcCChhhHHHHHHHHHHHHHhCcHHHHHHHHhccCC--chhhhhhhcccccccccccchHHHHHHHHHHhhhh
No 429
>PRK13342 recombination factor protein RarA; Reviewed
Probab=47.28 E-value=2.5e+02 Score=26.36 Aligned_cols=96 Identities=11% Similarity=-0.001 Sum_probs=52.1
Q ss_pred HHHHHHhhc---cCChHHHHHHHHHHHhccccCChhhHHHHHHHHHhcCC-----hhHHHHHHHHHHhCCCCccHHHHHH
Q 044770 273 VLAIEAFGR---IAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGF-----IDKASGLLKEMSMNGCKPNAITYRH 344 (464)
Q Consensus 273 ~~l~~~~~~---~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~-----~~~a~~~~~~m~~~g~~p~~~~~~~ 344 (464)
..++.++.+ ..+.+.|...+..|.+.|..|....-..++.++-..|. ..-|...++....-|.+--......
T Consensus 231 ~~~isa~~ks~rgsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~edig~a~~~~~~~~~~~~~~~~~~g~pe~~~~l~~ 310 (413)
T PRK13342 231 YDLISALHKSIRGSDPDAALYYLARMLEAGEDPLFIARRLVIIASEDIGLADPNALQVAVAAADAVERIGMPEGRIALAQ 310 (413)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhcccCHHHHHHHHHHHHHHHHhCCcHHHHHHHH
Confidence 344444443 47888999999999988877765444444444444432 2234444555555555433333333
Q ss_pred HHHHHHhcCChHHHHHHHHHhHHH
Q 044770 345 LALGCFKSNLVEEGFKALELGMKL 368 (464)
Q Consensus 345 ll~~~~~~~~~~~a~~~~~~~~~~ 368 (464)
.+-.++.+-+-..+...+..+++.
T Consensus 311 ~~~~l~~~pksn~~~~a~~~a~~~ 334 (413)
T PRK13342 311 AVIYLALAPKSNAAYTAINAALAD 334 (413)
T ss_pred HHHHHHcCCCccHHHHHHHHHHHH
Confidence 333345555555555555555443
No 430
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=46.72 E-value=2.5e+02 Score=26.19 Aligned_cols=60 Identities=12% Similarity=0.079 Sum_probs=40.2
Q ss_pred hHHHHHHHHHhhcChhhHHHHHHHhccC--------CCCchhhHHHHHHHhhccCChHHHHHHHHHHH
Q 044770 237 TLDVLIILYGYLAKGKDLERIWATVQEL--------PNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQ 296 (464)
Q Consensus 237 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 296 (464)
+...+++.++-.||+..|.++++.+.-+ +.....++-.+.-+|.-.+++.+|.++|..+.
T Consensus 124 SligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL 191 (404)
T PF10255_consen 124 SLIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQIL 191 (404)
T ss_pred HHHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455667777778888888777765431 22233345566777788888888888887665
No 431
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=46.04 E-value=1.1e+02 Score=22.04 Aligned_cols=21 Identities=14% Similarity=0.472 Sum_probs=9.6
Q ss_pred HHHHHHhhCcHHHHHHHHHHH
Q 044770 101 LVIACLDKGVIKLSLEYMKKM 121 (464)
Q Consensus 101 li~~~~~~~~~~~a~~~~~~m 121 (464)
++..|...++.++|...+.++
T Consensus 8 ~l~ey~~~~d~~ea~~~l~el 28 (113)
T PF02847_consen 8 ILMEYFSSGDVDEAVECLKEL 28 (113)
T ss_dssp HHHHHHHHT-HHHHHHHHHHT
T ss_pred HHHHHhcCCCHHHHHHHHHHh
Confidence 334444445555555555443
No 432
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=45.72 E-value=2.2e+02 Score=25.34 Aligned_cols=109 Identities=12% Similarity=0.009 Sum_probs=62.2
Q ss_pred HHHHHHHHHHHHHcCC----CCchhhHHHHHHHhcCCCCcccHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhHHHH
Q 044770 111 IKLSLEYMKKMRVLGH----SISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMK 186 (464)
Q Consensus 111 ~~~a~~~~~~m~~~~~----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 186 (464)
.+.|.+.|+.....+. ..+......++....+.|+.+....+++.... .++......++.+++...+.+...+
T Consensus 146 ~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~---~~~~~~k~~~l~aLa~~~d~~~~~~ 222 (324)
T PF11838_consen 146 VAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKN---STSPEEKRRLLSALACSPDPELLKR 222 (324)
T ss_dssp HHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHT---TSTHHHHHHHHHHHTT-S-HHHHHH
T ss_pred HHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhc---cCCHHHHHHHHHhhhccCCHHHHHH
Confidence 5677778887776422 34555666677777777776555555555554 3466667778888888888888888
Q ss_pred HHHHHHhCC-CCCcHhHHHHHHHHHHhcChh--hHHHHHHH
Q 044770 187 VYSDMKRSE-VEPNEVSYCILATAHAVARLY--TVAETYVE 224 (464)
Q Consensus 187 ~~~~m~~~~-~~p~~~~~~~li~~~~~~~~~--~~a~~~~~ 224 (464)
+++.....+ ++ +... ..++.++...+.. +.+.+++.
T Consensus 223 ~l~~~l~~~~v~-~~d~-~~~~~~~~~~~~~~~~~~~~~~~ 261 (324)
T PF11838_consen 223 LLDLLLSNDKVR-SQDI-RYVLAGLASSNPVGRDLAWEFFK 261 (324)
T ss_dssp HHHHHHCTSTS--TTTH-HHHHHHHH-CSTTCHHHHHHHHH
T ss_pred HHHHHcCCcccc-cHHH-HHHHHHHhcCChhhHHHHHHHHH
Confidence 888887754 33 3333 3334444423332 55555544
No 433
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=45.17 E-value=1e+02 Score=21.24 Aligned_cols=34 Identities=3% Similarity=-0.146 Sum_probs=15.5
Q ss_pred cChhhHHHHHHHHHHhccCCCChhhHHHHHHHHHhhcCh
Q 044770 213 ARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKG 251 (464)
Q Consensus 213 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 251 (464)
.|+.+.|.+++..+. .| +..|..++.++...|..
T Consensus 49 ~g~~~~ar~LL~~L~-rg----~~aF~~Fl~aLreT~~~ 82 (88)
T cd08819 49 HGNESGARELLKRIV-QK----EGWFSKFLQALRETEHH 82 (88)
T ss_pred cCcHHHHHHHHHHhc-cC----CcHHHHHHHHHHHcCch
Confidence 345555555555544 22 22344444444444443
No 434
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=44.96 E-value=3.5e+02 Score=27.39 Aligned_cols=120 Identities=17% Similarity=0.076 Sum_probs=76.7
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCCccHH--HHHHHHHHHHhcCChHHHHHHHHHhHHHHhhhhhcCCCCcHHHHHHHHHH
Q 044770 313 VYCKNGFIDKASGLLKEMSMNGCKPNAI--TYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEI 390 (464)
Q Consensus 313 ~~~~~~~~~~a~~~~~~m~~~g~~p~~~--~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~ 390 (464)
++..-|+-++|..+..+|.... .|-.. -.-++..+|+-.|+.....+++.-++ .....|+.-+..+.-+
T Consensus 510 aL~~ygrqe~Ad~lI~el~~dk-dpilR~~Gm~t~alAy~GTgnnkair~lLh~aV--------sD~nDDVrRaAVialG 580 (929)
T KOG2062|consen 510 ALVVYGRQEDADPLIKELLRDK-DPILRYGGMYTLALAYVGTGNNKAIRRLLHVAV--------SDVNDDVRRAAVIALG 580 (929)
T ss_pred HHHHhhhhhhhHHHHHHHhcCC-chhhhhhhHHHHHHHHhccCchhhHHHhhcccc--------cccchHHHHHHHHHhe
Confidence 4455677788888888887643 22211 12345566777888777777776653 4555566666666667
Q ss_pred HHhcCChhhHHHHHHHHHHcCCCCcHHHHHH--HHHHHHHcCC-ChhHHHHHHHh
Q 044770 391 FAEKGDVGNAENLFEELKKANYTKYTFVYNT--LIKAYVKAKI-NDPNLLRRMIL 442 (464)
Q Consensus 391 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~--li~~~~~~g~-~a~~~~~~m~~ 442 (464)
+.-..+++....+.+-+.+. ..|.++.=.+ |--+|+-.|. +|+.+++.|..
T Consensus 581 FVl~~dp~~~~s~V~lLses-~N~HVRyGaA~ALGIaCAGtG~~eAi~lLepl~~ 634 (929)
T KOG2062|consen 581 FVLFRDPEQLPSTVSLLSES-YNPHVRYGAAMALGIACAGTGLKEAINLLEPLTS 634 (929)
T ss_pred eeEecChhhchHHHHHHhhh-cChhhhhhHHHHHhhhhcCCCcHHHHHHHhhhhc
Confidence 77778888888888766653 4465553333 3344555554 48888888875
No 435
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=44.72 E-value=2.3e+02 Score=25.38 Aligned_cols=120 Identities=10% Similarity=0.067 Sum_probs=63.3
Q ss_pred HHHHHHHHHHhccCCCChhhHHHHHHHHHhhcChhhHHHHHHHhccCCCCchhhHHHHHHHhhc---cCChHHHHHHHHH
Q 044770 218 VAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGR---IAQVSRAEELWLE 294 (464)
Q Consensus 218 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~a~~~~~~ 294 (464)
.-+.++++.++. .+.+.......+..+.+..+.+...+-|+.+....+.+...|...++.... .-.++....+|.+
T Consensus 49 ~klsilerAL~~-np~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~ 127 (321)
T PF08424_consen 49 RKLSILERALKH-NPDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDVYEK 127 (321)
T ss_pred HHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHHHH
Confidence 445555655555 224445555556666666666666666666666555555555555544332 2234444444443
Q ss_pred HHhc------cc----cCChh-------hHHHHHHHHHhcCChhHHHHHHHHHHhCCC-Ccc
Q 044770 295 MQSV------KQ----LKATE-------QYNSVISVYCKNGFIDKASGLLKEMSMNGC-KPN 338 (464)
Q Consensus 295 ~~~~------~~----~~~~~-------~~~~li~~~~~~~~~~~a~~~~~~m~~~g~-~p~ 338 (464)
.... +. .+... .+..+..-+...|..+.|..+++-+.+.++ .|.
T Consensus 128 ~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n~~~P~ 189 (321)
T PF08424_consen 128 CLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFNFFRPE 189 (321)
T ss_pred HHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHHcCCcc
Confidence 3221 11 01111 222233344567999999999999988664 443
No 436
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=44.70 E-value=1.9e+02 Score=24.26 Aligned_cols=98 Identities=13% Similarity=0.095 Sum_probs=59.3
Q ss_pred cCccChhchHHHHHHHHhhcchHHHHHHHHHHHHcCCCCC---CchhH--HHHHHHHHhhcChHHHHHHhhhcCCC--CC
Q 044770 21 GFPVHRGEIFHSINRLRKLQLNKRALEVMEWVIRERPYRP---KELDY--SYLLEFTIKNHGISQGEKLFCCIPKD--YQ 93 (464)
Q Consensus 21 g~~~~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~---~~~~~--~~l~~~~~~~g~~~~a~~~~~~~~~~--~~ 93 (464)
.+.+....++.++--|.-...+.+|-+.|..- .|+.| +..++ ..-+......|+++.|.+....+... ..
T Consensus 21 ~~~~~~~d~n~LVmnylv~eg~~EaA~~Fa~e---~~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~PeiLd~ 97 (228)
T KOG2659|consen 21 KVSVMREDLNRLVMNYLVHEGYVEAAEKFAKE---SGIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLNPEILDT 97 (228)
T ss_pred ccCcchhhHHHHHHHHHHhccHHHHHHHhccc---cCCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhChHHHcc
Confidence 45667777878776666665666666555443 34444 22222 44566778999999999999887654 22
Q ss_pred chhHHHHHHH----HHHhhCcHHHHHHHHHHH
Q 044770 94 NELLYNNLVI----ACLDKGVIKLSLEYMKKM 121 (464)
Q Consensus 94 ~~~~~~~li~----~~~~~~~~~~a~~~~~~m 121 (464)
|...+-.|.. -..+.|..++|++..+.=
T Consensus 98 n~~l~F~Lq~q~lIEliR~~~~eeal~F~q~~ 129 (228)
T KOG2659|consen 98 NRELFFHLQQLHLIELIREGKTEEALEFAQTK 129 (228)
T ss_pred chhHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 3322222221 245666777777766543
No 437
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=44.68 E-value=1.3e+02 Score=22.44 Aligned_cols=42 Identities=17% Similarity=0.167 Sum_probs=31.6
Q ss_pred HHHHHHhhhcCCC---CCchhHHHHHHHHHHhhCcHHHHHHHHHH
Q 044770 79 SQGEKLFCCIPKD---YQNELLYNNLVIACLDKGVIKLSLEYMKK 120 (464)
Q Consensus 79 ~~a~~~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 120 (464)
+.+.++|..|... ..-...|......+...|++++|.++|+.
T Consensus 80 ~~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 80 SDPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp SHHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred cCHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 3788888877664 33566788888888888999999988865
No 438
>PF11123 DNA_Packaging_2: DNA packaging protein ; InterPro: IPR024345 This entry represents Gp18 (gene 18 product), also known as DNA maturase A, from T7-like bacteriophages. In Bacteriophage T3, this protein is required for DNA packaging and functions in a complex with Gp19 [].
Probab=44.23 E-value=76 Score=20.80 Aligned_cols=32 Identities=9% Similarity=0.321 Sum_probs=15.9
Q ss_pred hHHHHHHHHHHHhccccCChhhHHHHHHHHHhc
Q 044770 285 VSRAEELWLEMQSVKQLKATEQYNSVISVYCKN 317 (464)
Q Consensus 285 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 317 (464)
.+.|..++..+.. ....++..||++..-+.++
T Consensus 13 tEmA~~mL~DLr~-dekRsPQLYnAI~k~L~RH 44 (82)
T PF11123_consen 13 TEMAQQMLADLRD-DEKRSPQLYNAIGKLLDRH 44 (82)
T ss_pred HHHHHHHHHHhcc-hhhcChHHHHHHHHHHHHc
Confidence 3445555555544 2233555666655554443
No 439
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=43.93 E-value=1.6e+02 Score=23.37 Aligned_cols=13 Identities=8% Similarity=0.217 Sum_probs=5.2
Q ss_pred HHHHHHHHHHhCC
Q 044770 183 GLMKVYSDMKRSE 195 (464)
Q Consensus 183 ~a~~~~~~m~~~~ 195 (464)
.|.++++.+.+.+
T Consensus 43 Sa~eI~~~L~~~~ 55 (169)
T PRK11639 43 SAYDLLDLLREAE 55 (169)
T ss_pred CHHHHHHHHHhhC
Confidence 3444444444333
No 440
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=43.81 E-value=2.9e+02 Score=26.19 Aligned_cols=129 Identities=9% Similarity=-0.150 Sum_probs=86.5
Q ss_pred hHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCCchhHHHHHHHHHhhcChHHHHHHhhhcCCC-CCchhHHHHHHHHHHh
Q 044770 29 IFHSINRLRKLQLNKRALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQGEKLFCCIPKD-YQNELLYNNLVIACLD 107 (464)
Q Consensus 29 ~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~li~~~~~ 107 (464)
...-+..-...|++..|-+-+....+..+-.|+... .....+...|+++.+...+...... .....+...+++...+
T Consensus 292 ~~~si~k~~~~gd~~aas~~~~~~lr~~~~~p~~i~--l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~ 369 (831)
T PRK15180 292 ITLSITKQLADGDIIAASQQLFAALRNQQQDPVLIQ--LRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHG 369 (831)
T ss_pred HHHHHHHHhhccCHHHHHHHHHHHHHhCCCCchhhH--HHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhc
Confidence 344455556778888776655555554444455433 3344567789999999888777665 3456677888899999
Q ss_pred hCcHHHHHHHHHHHHHcCCCCchhhHHHHHHHhcCCCCcccHHHHHHHHHhCC
Q 044770 108 KGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADK 160 (464)
Q Consensus 108 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 160 (464)
.|++++|...-+-|+...++ |...........-..|-++++.-.++++...+
T Consensus 370 l~r~~~a~s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~ 421 (831)
T PRK15180 370 LARWREALSTAEMMLSNEIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLLLN 421 (831)
T ss_pred hhhHHHHHHHHHHHhccccC-ChhheeeecccHHHHhHHHHHHHHHHHHhccC
Confidence 99999999999988876554 33333333333344556788888888877654
No 441
>PRK09857 putative transposase; Provisional
Probab=43.34 E-value=2.1e+02 Score=25.21 Aligned_cols=58 Identities=7% Similarity=-0.076 Sum_probs=25.2
Q ss_pred HccCChhHHHHHHHHHHhCCCCCcHhHHHHHHHHHHhcChhhHHHHHHHHHHhccCCCC
Q 044770 176 ANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNN 234 (464)
Q Consensus 176 ~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~ 234 (464)
...++.++..++++.+.+. .++.....-++..-+.+.|.-+++.++..+|...|+.++
T Consensus 217 ~~~~~~~~~~~~~~~l~~~-~~~~~e~iMTiAEqL~qeG~qe~~~~ia~~ml~~g~~~~ 274 (292)
T PRK09857 217 LQTGDAVRFNDFIDGVAER-SPKHKESLMTIAERLRQEGEQSKALHIAKIMLESGVPLA 274 (292)
T ss_pred hhccccchHHHHHHHHHHh-CccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHH
Confidence 3344444444444444333 111222222333334444444455566666666655443
No 442
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=43.13 E-value=2.5e+02 Score=25.15 Aligned_cols=95 Identities=13% Similarity=0.112 Sum_probs=53.5
Q ss_pred HHHHHHHhhccCChHHHHHHHHHHH----hccccCChhhHHHHHH-HHHhcCChhHHHHHHHHHHhCCCCccHHHHHHHH
Q 044770 272 YVLAIEAFGRIAQVSRAEELWLEMQ----SVKQLKATEQYNSVIS-VYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLA 346 (464)
Q Consensus 272 ~~~l~~~~~~~g~~~~a~~~~~~~~----~~~~~~~~~~~~~li~-~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll 346 (464)
+.....-||+.|+-+.|.+.+.... ..|.+.|+..+.+=+. .|....-+.+-++..+.+.+.|-..+...---.-
T Consensus 107 ~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrNRlKvY 186 (393)
T KOG0687|consen 107 MLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRNRLKVY 186 (393)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhhhHHHH
Confidence 4455566777777777776665443 3455556554443332 2333444556666667777777665543222222
Q ss_pred HH--HHhcCChHHHHHHHHHhH
Q 044770 347 LG--CFKSNLVEEGFKALELGM 366 (464)
Q Consensus 347 ~~--~~~~~~~~~a~~~~~~~~ 366 (464)
.+ |....++.+|-.+|-..+
T Consensus 187 ~Gly~msvR~Fk~Aa~Lfld~v 208 (393)
T KOG0687|consen 187 QGLYCMSVRNFKEAADLFLDSV 208 (393)
T ss_pred HHHHHHHHHhHHHHHHHHHHHc
Confidence 22 344567788877777664
No 443
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=42.67 E-value=92 Score=22.58 Aligned_cols=45 Identities=20% Similarity=0.241 Sum_probs=32.3
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHHcCCCCcHHHHHHHHHHHHHcC
Q 044770 386 SIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAK 430 (464)
Q Consensus 386 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g 430 (464)
.++..+...+..-.|.++++.+.+.+..++..|--..++.+...|
T Consensus 5 ~Il~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~G 49 (116)
T cd07153 5 AILEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAG 49 (116)
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCC
Confidence 455666666777788888888888776666666555677777776
No 444
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=42.41 E-value=1.9e+02 Score=25.55 Aligned_cols=44 Identities=9% Similarity=0.134 Sum_probs=36.0
Q ss_pred HHHHHHHHHhCCCCccHHHHHHHHHHHHhcCChHHHHHHHHHhH
Q 044770 323 ASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGM 366 (464)
Q Consensus 323 a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 366 (464)
-.++|+.|.+.++.|.-..|..+.-.+.+.=.+.+.+.+|+..+
T Consensus 262 D~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~ 305 (370)
T KOG4567|consen 262 DEELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLL 305 (370)
T ss_pred hHHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHh
Confidence 35788888888899988888887777788888888889998873
No 445
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=42.12 E-value=1.1e+02 Score=20.99 Aligned_cols=14 Identities=29% Similarity=0.228 Sum_probs=5.9
Q ss_pred CChHHHHHHHHHHH
Q 044770 283 AQVSRAEELWLEMQ 296 (464)
Q Consensus 283 g~~~~a~~~~~~~~ 296 (464)
|+.+.|.+++..+.
T Consensus 50 g~~~~ar~LL~~L~ 63 (88)
T cd08819 50 GNESGARELLKRIV 63 (88)
T ss_pred CcHHHHHHHHHHhc
Confidence 34444444444444
No 446
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=41.96 E-value=2.3e+02 Score=28.66 Aligned_cols=31 Identities=10% Similarity=0.026 Sum_probs=20.7
Q ss_pred HHHHHHHHHhhCcHHHHHHHHHHHHHcCCCCc
Q 044770 98 YNNLVIACLDKGVIKLSLEYMKKMRVLGHSIS 129 (464)
Q Consensus 98 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~ 129 (464)
...++.++. .++...++.+++++...|+.+.
T Consensus 249 If~LldAL~-~~d~~~al~~l~~L~~~G~d~~ 279 (709)
T PRK08691 249 LYELLTGII-NQDGAALLAKAQEMAACAVGFD 279 (709)
T ss_pred HHHHHHHHH-cCCHHHHHHHHHHHHHhCCCHH
Confidence 344445444 4778888888888888776543
No 447
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=41.90 E-value=1.3e+02 Score=25.74 Aligned_cols=57 Identities=7% Similarity=0.059 Sum_probs=35.0
Q ss_pred HHHHHhcCCCCcccHHHHHHHHHh----CC-CCCChhhHHHHHHHHHccCChhHHHHHHHHH
Q 044770 135 RLIILNSSPGRRKTIPNILRQMKA----DK-VAPHVSTFHILMKIEANDHNIEGLMKVYSDM 191 (464)
Q Consensus 135 ~l~~~~~~~~~~~~a~~~~~~~~~----~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m 191 (464)
.+..-|.+.|++++|.++|+.+.. .| ..+...+...+..++.+.|+.+..+.+-=+|
T Consensus 183 ~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leL 244 (247)
T PF11817_consen 183 EMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLEL 244 (247)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 455566777777777777777642 22 1334445556667777777777766665444
No 448
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=41.74 E-value=49 Score=16.68 Aligned_cols=14 Identities=14% Similarity=0.366 Sum_probs=7.6
Q ss_pred ChHHHHHHHHHHHh
Q 044770 284 QVSRAEELWLEMQS 297 (464)
Q Consensus 284 ~~~~a~~~~~~~~~ 297 (464)
+.+.|..+|+++..
T Consensus 2 ~~~~~r~i~e~~l~ 15 (33)
T smart00386 2 DIERARKIYERALE 15 (33)
T ss_pred cHHHHHHHHHHHHH
Confidence 44555555555554
No 449
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=41.51 E-value=4.5e+02 Score=28.58 Aligned_cols=140 Identities=13% Similarity=0.044 Sum_probs=84.9
Q ss_pred CCCCchhhHHHHHHHhhccCChHHHHHHHHHHH-------hccccCChhhHHHHHHHHHhcCChhHHHHHHHHHHhC---
Q 044770 264 LPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQ-------SVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMN--- 333 (464)
Q Consensus 264 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~-------~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~--- 333 (464)
..+.....|..+...+.+.|+.++|...-.... ...-+-+...|..+.......++...|+..+.+....
T Consensus 968 ~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~L 1047 (1236)
T KOG1839|consen 968 LHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYGNLALYEFAVKNLSGALKSLNRALKLKLL 1047 (1236)
T ss_pred cchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHhhHHHHHHHhccCccchhhhHHHHHHhhcc
Confidence 444555567888888889999988887654322 1111123445666655556666788888877776542
Q ss_pred --C--CCccHHHHHHHHHHHHhcCChHHHHHHHHHhHHHHhhhhhcCCCCcHHHHHHHHHHHHhcCChhhHHHH
Q 044770 334 --G--CKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENL 403 (464)
Q Consensus 334 --g--~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 403 (464)
| .+|...+++.+-..+...++.+.|.++++.+.+....-....--++..+|..+.+.+...|++..|...
T Consensus 1048 s~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v~g~~~l~~~~~~~~~a~l~~s~~dfr~al~~ 1121 (1236)
T KOG1839|consen 1048 SSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKNKKVLGPKELETALSYHALARLFESMKDFRNALEH 1121 (1236)
T ss_pred ccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcCccchhhhhHHHHHHHHHhhhHHHHHHHHH
Confidence 2 223334444444445566899999999999976433211112233555677777777666766665544
No 450
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=41.32 E-value=42 Score=17.89 Aligned_cols=25 Identities=8% Similarity=0.127 Sum_probs=18.7
Q ss_pred ChhhHHHHHHHHHHcCCCCcHHHHHHH
Q 044770 396 DVGNAENLFEELKKANYTKYTFVYNTL 422 (464)
Q Consensus 396 ~~~~A~~~~~~m~~~~~~p~~~~~~~l 422 (464)
.++.|..+|++.... .|++.+|-..
T Consensus 2 E~dRAR~IyeR~v~~--hp~~k~Wiky 26 (32)
T PF02184_consen 2 EFDRARSIYERFVLV--HPEVKNWIKY 26 (32)
T ss_pred hHHHHHHHHHHHHHh--CCCchHHHHH
Confidence 467888999998874 4888877543
No 451
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=40.58 E-value=99 Score=19.86 Aligned_cols=51 Identities=10% Similarity=0.068 Sum_probs=34.9
Q ss_pred cCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCccHHHHHHHHHHHHhc
Q 044770 301 LKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKS 352 (464)
Q Consensus 301 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 352 (464)
.|+...++.++..+++..-.+.++..+.++.+.|. .+..+|..-++.+++.
T Consensus 5 ~~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g~-I~~d~~lK~vR~LaRe 55 (65)
T PF09454_consen 5 VAEDPLSNQLYELVAEDHAIEDTIYYLDRALQRGS-IDLDTFLKQVRSLARE 55 (65)
T ss_dssp E-SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-S-HHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHH
Confidence 35556778888888888788888888888888775 3556666555555553
No 452
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=40.32 E-value=1.8e+02 Score=28.96 Aligned_cols=29 Identities=24% Similarity=0.211 Sum_probs=17.8
Q ss_pred HHHHHHHHhhCcHHHHHHHHHHHHHcCCCC
Q 044770 99 NNLVIACLDKGVIKLSLEYMKKMRVLGHSI 128 (464)
Q Consensus 99 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~~ 128 (464)
..++.++. .|+...++.+++++...|..+
T Consensus 255 ~~LldaL~-~~d~~~al~~l~~l~~~G~~~ 283 (618)
T PRK14951 255 FRLIDALA-QGDGRTVVETADELRLNGLSA 283 (618)
T ss_pred HHHHHHHH-cCCHHHHHHHHHHHHHcCCCH
Confidence 33444433 367777777777777766543
No 453
>PF02631 RecX: RecX family; InterPro: IPR003783 RecX is a putative bacterial regulatory protein []. The gene encoding RecX is found downstream of recA, and it is suggested that the RecX protein might be regulator of RecA activity by interaction with the RecA protein or filament [].; GO: 0006282 regulation of DNA repair; PDB: 3DFG_A 3D5L_B 3C1D_B 3E3V_A.
Probab=39.99 E-value=98 Score=22.78 Aligned_cols=47 Identities=11% Similarity=0.224 Sum_probs=18.7
Q ss_pred HHHHHHHHHHcCCCCcHHHHHHHHHHHHH-cCCChhHHHHHHHhCCCC
Q 044770 400 AENLFEELKKANYTKYTFVYNTLIKAYVK-AKINDPNLLRRMILGGAR 446 (464)
Q Consensus 400 A~~~~~~m~~~~~~p~~~~~~~li~~~~~-~g~~a~~~~~~m~~~~~~ 446 (464)
+..+++.+.+.|+--|...-..++....+ .+.-...+-.++.+.||.
T Consensus 11 I~~vi~~l~~~gyidD~~ya~~~v~~~~~~~~~G~~~I~~~L~~kGi~ 58 (121)
T PF02631_consen 11 IEEVIDRLKELGYIDDERYAESYVRSRLRRKGKGPRRIRQKLKQKGID 58 (121)
T ss_dssp HHHHHHHHHHTTSS-HHHHHHHHHHHHHHHTT--HHHHHHHHHHTT--
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHhcccccccHHHHHHHHHHHCCC
Confidence 33444445555544333333444444444 222244444444444444
No 454
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=39.79 E-value=3.1e+02 Score=25.37 Aligned_cols=54 Identities=19% Similarity=0.103 Sum_probs=31.2
Q ss_pred HHccCChhHHHHHHHHHHhCCCCCcHh--HHHHHHHHHH--hcChhhHHHHHHHHHHhc
Q 044770 175 EANDHNIEGLMKVYSDMKRSEVEPNEV--SYCILATAHA--VARLYTVAETYVEALEKS 229 (464)
Q Consensus 175 ~~~~~~~~~a~~~~~~m~~~~~~p~~~--~~~~li~~~~--~~~~~~~a~~~~~~~~~~ 229 (464)
+.+.+++..|.++|+.+..+ ++++.. .+..+..+|. ..-++++|.+.++.....
T Consensus 141 l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 141 LFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 44677777777777777765 444443 3333444443 244566777777665543
No 455
>COG4003 Uncharacterized protein conserved in archaea [Function unknown]
Probab=39.35 E-value=58 Score=21.78 Aligned_cols=29 Identities=21% Similarity=0.393 Sum_probs=22.4
Q ss_pred HHHHHHHhhcchHHHHHHHHHHHHcCCCC
Q 044770 31 HSINRLRKLQLNKRALEVMEWVIRERPYR 59 (464)
Q Consensus 31 ~~l~~~~~~~~~~~A~~~~~~~~~~~~~~ 59 (464)
+++..+.+..--++|+++++++.+++.+.
T Consensus 36 tV~D~L~rCdT~EEAlEii~yleKrGEi~ 64 (98)
T COG4003 36 TVIDFLRRCDTEEEALEIINYLEKRGEIT 64 (98)
T ss_pred hHHHHHHHhCcHHHHHHHHHHHHHhCCCC
Confidence 45666777778899999999999866443
No 456
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=39.21 E-value=95 Score=22.78 Aligned_cols=45 Identities=18% Similarity=0.233 Sum_probs=31.5
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHHcCCCCcHHHHHHHHHHHHHcC
Q 044770 386 SIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAK 430 (464)
Q Consensus 386 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g 430 (464)
.++..+...+..-.|.++++.+.+.+...+..|.-.-+..+.+.|
T Consensus 12 ~Il~~l~~~~~~~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 56 (120)
T PF01475_consen 12 AILELLKESPEHLTAEEIYDKLRKKGPRISLATVYRTLDLLEEAG 56 (120)
T ss_dssp HHHHHHHHHSSSEEHHHHHHHHHHTTTT--HHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCCCCCCHHHHHHHhhhccCCcCHHHHHHHHHHHHHCC
Confidence 567777777778888899999988877666665444566666665
No 457
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=38.95 E-value=30 Score=30.65 Aligned_cols=89 Identities=8% Similarity=-0.021 Sum_probs=41.8
Q ss_pred hhCcHHHHHHHHHHHHHcCCCCchhhHHHHHHHhcCCCCcccHHHHHHHHHhCCCCCChh-hHHHHHHHHHccCChhHHH
Q 044770 107 DKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVS-TFHILMKIEANDHNIEGLM 185 (464)
Q Consensus 107 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~ 185 (464)
..|.++.|++.|...+..+ ++....|..-.+++.+.+++..|++=++..... .||.. -|-.--.+-...|+|++|.
T Consensus 126 n~G~~~~ai~~~t~ai~ln-p~~a~l~~kr~sv~lkl~kp~~airD~d~A~ei--n~Dsa~~ykfrg~A~rllg~~e~aa 202 (377)
T KOG1308|consen 126 NDGEFDTAIELFTSAIELN-PPLAILYAKRASVFLKLKKPNAAIRDCDFAIEI--NPDSAKGYKFRGYAERLLGNWEEAA 202 (377)
T ss_pred cCcchhhhhcccccccccC-CchhhhcccccceeeeccCCchhhhhhhhhhcc--CcccccccchhhHHHHHhhchHHHH
Confidence 3455555555555555542 333444444445555555555555555544432 23321 1211122223345556665
Q ss_pred HHHHHHHhCCCCC
Q 044770 186 KVYSDMKRSEVEP 198 (464)
Q Consensus 186 ~~~~~m~~~~~~p 198 (464)
..|....+.++.+
T Consensus 203 ~dl~~a~kld~dE 215 (377)
T KOG1308|consen 203 HDLALACKLDYDE 215 (377)
T ss_pred HHHHHHHhccccH
Confidence 5555555554433
No 458
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=38.58 E-value=2.9e+02 Score=24.71 Aligned_cols=40 Identities=20% Similarity=0.162 Sum_probs=22.4
Q ss_pred hHHHHHHHHHHhhCcHHHHHHHHHHHHH----cCCCCchhhHHH
Q 044770 96 LLYNNLVIACLDKGVIKLSLEYMKKMRV----LGHSISYLVFNR 135 (464)
Q Consensus 96 ~~~~~li~~~~~~~~~~~a~~~~~~m~~----~~~~~~~~~~~~ 135 (464)
..+-....-||+.|+-+.|++.+.+..+ .|.+.|+..+..
T Consensus 105 ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~i 148 (393)
T KOG0687|consen 105 EAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKI 148 (393)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHH
Confidence 3455555667777777777666654433 344555544433
No 459
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=38.57 E-value=2.2e+02 Score=23.24 Aligned_cols=55 Identities=16% Similarity=0.229 Sum_probs=30.3
Q ss_pred HHHHHhhccCChHHHHHHHHHHHhcccc--------------CChhhHHHHHHHHHhcCChhHHHHHHH
Q 044770 274 LAIEAFGRIAQVSRAEELWLEMQSVKQL--------------KATEQYNSVISVYCKNGFIDKASGLLK 328 (464)
Q Consensus 274 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~--------------~~~~~~~~li~~~~~~~~~~~a~~~~~ 328 (464)
+++-.|-+..++.+..++++.|.+..+. +--..-|.....+.+.|.++.|+.+++
T Consensus 137 S~m~~Yhk~~qW~KGrkvLd~l~el~i~ft~LKGL~g~e~~asrCqivn~AaEiFL~sgsidGA~~vLr 205 (233)
T PF14669_consen 137 SLMYSYHKTLQWSKGRKVLDKLHELQIHFTSLKGLTGPEKLASRCQIVNIAAEIFLKSGSIDGALWVLR 205 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCccCccccCchhhhHHHHHHHHHHcCCchHHHHHHh
Confidence 4555666666777777777766653221 112233444555555566666655555
No 460
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=38.47 E-value=1.5e+02 Score=21.32 Aligned_cols=24 Identities=4% Similarity=-0.029 Sum_probs=13.0
Q ss_pred HHHHHHHhhcChHHHHHHhhhcCC
Q 044770 67 YLLEFTIKNHGISQGEKLFCCIPK 90 (464)
Q Consensus 67 ~l~~~~~~~g~~~~a~~~~~~~~~ 90 (464)
.++.-|...|+.++|...+.++..
T Consensus 7 ~~l~ey~~~~d~~ea~~~l~el~~ 30 (113)
T PF02847_consen 7 SILMEYFSSGDVDEAVECLKELKL 30 (113)
T ss_dssp HHHHHHHHHT-HHHHHHHHHHTT-
T ss_pred HHHHHHhcCCCHHHHHHHHHHhCC
Confidence 344455555666666666666543
No 461
>PRK09462 fur ferric uptake regulator; Provisional
Probab=38.43 E-value=1.8e+02 Score=22.34 Aligned_cols=62 Identities=11% Similarity=0.010 Sum_probs=44.2
Q ss_pred HHHhccccCChhhHHHHHHHHHhc-CChhHHHHHHHHHHhCCCCccHHHHHHHHHHHHhcCChH
Q 044770 294 EMQSVKQLKATEQYNSVISVYCKN-GFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVE 356 (464)
Q Consensus 294 ~~~~~~~~~~~~~~~~li~~~~~~-~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~ 356 (464)
.+.+.|..++. .-..++..+... +..-.|.++++.+.+.+...+..|....+..+...|-+.
T Consensus 7 ~l~~~glr~T~-qR~~Il~~l~~~~~~h~sa~eI~~~l~~~~~~i~~aTVYR~L~~L~e~Gli~ 69 (148)
T PRK09462 7 ALKKAGLKVTL-PRLKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIVT 69 (148)
T ss_pred HHHHcCCCCCH-HHHHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCCEE
Confidence 34455655443 345556666654 467789999999999888788888888888888877553
No 462
>PRK09462 fur ferric uptake regulator; Provisional
Probab=38.30 E-value=1.8e+02 Score=22.33 Aligned_cols=33 Identities=9% Similarity=-0.043 Sum_probs=14.6
Q ss_pred hhHHHHHHHHHHhCCCCCcHhHHHHHHHHHHhc
Q 044770 181 IEGLMKVYSDMKRSEVEPNEVSYCILATAHAVA 213 (464)
Q Consensus 181 ~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 213 (464)
.-.|.++++.+.+.+...+..|..-.+..+...
T Consensus 33 h~sa~eI~~~l~~~~~~i~~aTVYR~L~~L~e~ 65 (148)
T PRK09462 33 HVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDA 65 (148)
T ss_pred CCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHC
Confidence 444555555555444434444433333333333
No 463
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=38.17 E-value=2.5e+02 Score=23.82 Aligned_cols=47 Identities=19% Similarity=0.132 Sum_probs=33.5
Q ss_pred cCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCccHHHHHHHHHHH
Q 044770 301 LKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGC 349 (464)
Q Consensus 301 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~ 349 (464)
.|.+.....++..|. .+++++|.+++.++.+.|+.|... .+++.+.+
T Consensus 236 ~PhP~~v~~ml~~~~-~~~~~~A~~il~~lw~lgysp~Di-i~~~FRv~ 282 (333)
T KOG0991|consen 236 EPHPLLVKKMLQACL-KRNIDEALKILAELWKLGYSPEDI-ITTLFRVV 282 (333)
T ss_pred CCChHHHHHHHHHHH-hccHHHHHHHHHHHHHcCCCHHHH-HHHHHHHH
Confidence 367777777776654 467999999999999999988653 23444443
No 464
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=38.06 E-value=2.3e+02 Score=25.58 Aligned_cols=63 Identities=10% Similarity=-0.024 Sum_probs=37.1
Q ss_pred HHHHHHhhhcCCCCCc----hhHHHHHHHHHHhhCcHHHHHHHHHHHHHcCCCCchhhHHHHHHHhc
Q 044770 79 SQGEKLFCCIPKDYQN----ELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNS 141 (464)
Q Consensus 79 ~~a~~~~~~~~~~~~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~ 141 (464)
++++.+++.+...-|+ +.-|-++++.....|.++..+.+|++.+..|..|=...-..+++.+-
T Consensus 120 eei~~~L~~li~~IP~A~K~aKYWIC~Arl~~~~~~~e~vi~iyEeAi~agAqPieElR~~l~diL~ 186 (353)
T PF15297_consen 120 EEILATLSDLIKNIPDAKKLAKYWICLARLEPRTGPIEDVIAIYEEAILAGAQPIEELRHVLVDILK 186 (353)
T ss_pred HHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence 4555555544444333 23566666666666777777777777777666666555555555443
No 465
>PF07443 HARP: HepA-related protein (HARP); InterPro: IPR010003 This entry represents a conserved region approximately 60 residues long within eukaryotic HepA-related protein (HARP). This exhibits single-stranded DNA-dependent ATPase activity, and is ubiquitously expressed in human and mouse tissues []. Family members may contain more than one copy of this region.; GO: 0004386 helicase activity, 0005524 ATP binding, 0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides, 0016568 chromatin modification, 0005634 nucleus
Probab=37.78 E-value=12 Score=22.91 Aligned_cols=35 Identities=20% Similarity=0.293 Sum_probs=28.5
Q ss_pred CChhhHHHHHHHHHHcCCCCcHHHHHHHHHHHHHc
Q 044770 395 GDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKA 429 (464)
Q Consensus 395 g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 429 (464)
|-.++...+|+.|..+...|....||-.+.-|...
T Consensus 6 gy~~~lI~vFK~~pSr~YD~~Tr~W~F~L~Dy~~L 40 (55)
T PF07443_consen 6 GYHEELIAVFKQMPSRNYDPKTRKWNFSLEDYSTL 40 (55)
T ss_pred cCCHHHHHHHHcCcccccCccceeeeeeHHHHHHH
Confidence 45677889999999999999999998887776553
No 466
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=37.08 E-value=2.9e+02 Score=24.32 Aligned_cols=155 Identities=10% Similarity=0.105 Sum_probs=0.0
Q ss_pred HHHHHHHHHhcChhhHHHHHHHHHHhccCCCChhhHHHHHHHHHhhcChhhHHHHHHHhccCCCCchhhHHHHHHHhhcc
Q 044770 203 YCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRI 282 (464)
Q Consensus 203 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 282 (464)
+..+-..-.-..+...+.......++.--..+......-+.......+-....++++.+..-..... -...+..+...
T Consensus 63 ~~a~~~v~el~~~l~~a~~~~~~~R~~L~~~~~~~~~~~L~Il~~~rkr~~l~~ll~~L~~i~~v~~--~~~~l~~ll~~ 140 (291)
T PF10475_consen 63 FQAMSSVQELQDELEEALVICKNLRRNLKSADENLTKSGLEILRLQRKRQNLKKLLEKLEQIKTVQQ--TQSRLQELLEE 140 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHhc
Q ss_pred CChHHHHHHHHHHHhccccCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCC-----CCccHHHHHHHHHHHHhcCChHH
Q 044770 283 AQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNG-----CKPNAITYRHLALGCFKSNLVEE 357 (464)
Q Consensus 283 g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g-----~~p~~~~~~~ll~~~~~~~~~~~ 357 (464)
|++..|.+++....+ -...+..+-..---..++.+-.....++.+.. ...|+..|..++.||.-.|+.+.
T Consensus 141 ~dy~~Al~li~~~~~-----~l~~l~~~~c~~~L~~~L~e~~~~i~~~ld~~l~~~~~~Fd~~~Y~~v~~AY~lLgk~~~ 215 (291)
T PF10475_consen 141 GDYPGALDLIEECQQ-----LLEELKGYSCVRHLSSQLQETLELIEEQLDSDLSKVCQDFDPDKYSKVQEAYQLLGKTQS 215 (291)
T ss_pred CCHHHHHHHHHHHHH-----HHHhcccchHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhHH
Q ss_pred HHHHHHH
Q 044770 358 GFKALEL 364 (464)
Q Consensus 358 a~~~~~~ 364 (464)
+.+-+..
T Consensus 216 ~~dkl~~ 222 (291)
T PF10475_consen 216 AMDKLQM 222 (291)
T ss_pred HHHHHHH
No 467
>COG0320 LipA Lipoate synthase [Coenzyme metabolism]
Probab=37.06 E-value=15 Score=31.24 Aligned_cols=50 Identities=10% Similarity=0.047 Sum_probs=38.4
Q ss_pred cCChhhHHHHHHHHHHcCCCCcHHHHHHHHHHHHHcCCChhHHHHHHHhCCC
Q 044770 394 KGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKINDPNLLRRMILGGA 445 (464)
Q Consensus 394 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~a~~~~~~m~~~~~ 445 (464)
..+++..+.+++...+.+ |++.|=+.++-|+....++..+.+++|.+.|+
T Consensus 193 ~A~Y~~SL~~L~~~k~~~--P~i~TKSgiMlGLGEt~~Ev~e~m~DLr~~gv 242 (306)
T COG0320 193 GATYERSLSLLERAKELG--PDIPTKSGLMVGLGETDEEVIEVMDDLRSAGV 242 (306)
T ss_pred CCcHHHHHHHHHHHHHhC--CCcccccceeeecCCcHHHHHHHHHHHHHcCC
Confidence 346777888888888765 78888888888887776677788888887764
No 468
>PF09868 DUF2095: Uncharacterized protein conserved in archaea (DUF2095); InterPro: IPR018662 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=36.92 E-value=1.4e+02 Score=21.60 Aligned_cols=38 Identities=21% Similarity=0.305 Sum_probs=25.4
Q ss_pred HHHHHHHhhcchHHHHHHHHHHHHcCCCCCCchhHHHHHH
Q 044770 31 HSINRLRKLQLNKRALEVMEWVIRERPYRPKELDYSYLLE 70 (464)
Q Consensus 31 ~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~ 70 (464)
.++..+.+....++|+++++++.+.+.+ +....+.|-.
T Consensus 66 tViD~lrRC~T~EEALEVInylek~GEI--t~e~A~eLr~ 103 (128)
T PF09868_consen 66 TVIDYLRRCKTDEEALEVINYLEKRGEI--TPEEAKELRS 103 (128)
T ss_pred hHHHHHHHhCcHHHHHHHHHHHHHhCCC--CHHHHHHHHH
Confidence 4666677778888999999999885533 4444444333
No 469
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=36.61 E-value=1.6e+02 Score=21.22 Aligned_cols=27 Identities=4% Similarity=0.133 Sum_probs=21.0
Q ss_pred hHHHHHHHHHccCChhHHHHHHHHHHh
Q 044770 167 TFHILMKIEANDHNIEGLMKVYSDMKR 193 (464)
Q Consensus 167 ~~~~l~~~~~~~~~~~~a~~~~~~m~~ 193 (464)
-|..|+..|...|..++|++++.++..
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 377788888888888888888887765
No 470
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=36.52 E-value=2.9e+02 Score=24.12 Aligned_cols=206 Identities=13% Similarity=0.026 Sum_probs=0.0
Q ss_pred hcchHHHHHHHHHHHHcCCCCCCchhHHHHHHHHHhhcChHHHHHHhhhcCCCCCchhHHHHHHHHHHh----hCcHHHH
Q 044770 39 LQLNKRALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQGEKLFCCIPKDYQNELLYNNLVIACLD----KGVIKLS 114 (464)
Q Consensus 39 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~a 114 (464)
.+++..+...+..........-................+...|..+|...... ........|...|.. ..+..+|
T Consensus 54 ~~~~~~a~~~~~~a~~~~~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~~-g~~~a~~~lg~~~~~G~gv~~d~~~A 132 (292)
T COG0790 54 PPDYAKALKSYEKAAELGDAAALALLGQMYGAGKGVSRDKTKAADWYRCAAAD-GLAEALFNLGLMYANGRGVPLDLVKA 132 (292)
T ss_pred cccHHHHHHHHHHhhhcCChHHHHHHHHHHHhccCccccHHHHHHHHHHHhhc-ccHHHHHhHHHHHhcCCCcccCHHHH
Q ss_pred HHHHHHHHHcCCCCchhhHHHHHHHhcCC-----CCcc--cHHHHHHHHHhCCCCCChhhHHHHHHHHHc----cCChhH
Q 044770 115 LEYMKKMRVLGHSISYLVFNRLIILNSSP-----GRRK--TIPNILRQMKADKVAPHVSTFHILMKIEAN----DHNIEG 183 (464)
Q Consensus 115 ~~~~~~m~~~~~~~~~~~~~~l~~~~~~~-----~~~~--~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~ 183 (464)
...|....+.|..+-..+...+...|... -.++ .|...+.++...+ +......+...|.. ..+..+
T Consensus 133 ~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~---~~~a~~~lg~~y~~G~Gv~~d~~~ 209 (292)
T COG0790 133 LKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG---NPDAQLLLGRMYEKGLGVPRDLKK 209 (292)
T ss_pred HHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc---CHHHHHHHHHHHHcCCCCCcCHHH
Q ss_pred HHHHHHHHHhCCCCCcHhHHHHHHHHHHhcC---------------hhhHHHHHHHHHHhccCCCChhhHHHHHHHHHhh
Q 044770 184 LMKVYSDMKRSEVEPNEVSYCILATAHAVAR---------------LYTVAETYVEALEKSMTGNNWSTLDVLIILYGYL 248 (464)
Q Consensus 184 a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~---------------~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 248 (464)
|...|....+.|. ......+- .+...| +...|...+......+..........+-......
T Consensus 210 A~~wy~~Aa~~g~---~~a~~~~~-~~~~~g~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (292)
T COG0790 210 AFRWYKKAAEQGD---GAACYNLG-LMYLNGEGVKKAAFLTAAKEEDKKQALEWLQKACELGFDNACEALRALKIGLSAR 285 (292)
T ss_pred HHHHHHHHHHCCC---HHHHHHHH-HHHhcCCCchhhhhcccccCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhhCc
Q ss_pred cChh
Q 044770 249 AKGK 252 (464)
Q Consensus 249 ~~~~ 252 (464)
+...
T Consensus 286 ~~~~ 289 (292)
T COG0790 286 GSGR 289 (292)
T ss_pred CCCc
No 471
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=36.22 E-value=2.7e+02 Score=23.69 Aligned_cols=17 Identities=6% Similarity=-0.021 Sum_probs=7.8
Q ss_pred hcCCCCcccHHHHHHHH
Q 044770 140 NSSPGRRKTIPNILRQM 156 (464)
Q Consensus 140 ~~~~~~~~~a~~~~~~~ 156 (464)
......++.|+..+.+.
T Consensus 88 ~l~s~~~~eaI~~Lqra 104 (284)
T KOG4642|consen 88 LLQSKGYDEAIKVLQRA 104 (284)
T ss_pred HHhhccccHHHHHHHHH
Confidence 33444445555444444
No 472
>KOG3636 consensus Uncharacterized conserved protein, contains TBC and Rhodanese domains [General function prediction only]
Probab=35.89 E-value=3.7e+02 Score=25.14 Aligned_cols=226 Identities=10% Similarity=0.069 Sum_probs=0.0
Q ss_pred HhhcCccChhchHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCCchhHHHHHHHHHhhcChHHHHHHhhhcCCC----CC
Q 044770 18 MREGFPVHRGEIFHSINRLRKLQLNKRALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQGEKLFCCIPKD----YQ 93 (464)
Q Consensus 18 ~~~g~~~~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~ 93 (464)
...|+..+.........-+-..|+ .++. |..+..-.+-+.....|+-+...--.+.-.++.++..+.+... .|
T Consensus 14 ~~dnwe~d~~~~~~~~gdl~t~G~-~~~~--W~~~L~V~~K~d~l~~wd~iydLp~Q~~lr~DC~~~~d~l~n~ee~~v~ 90 (669)
T KOG3636|consen 14 LDDNWETDVNVLSSELGDLDTEGN-DKSD--WMRLLGVSMKPNPLDDWDQIYDLPNQCALRNDCRKLADGLKNKEEDKVP 90 (669)
T ss_pred ccccHHHHHHHHHhhcCchhccCC-CHHH--HHHHhcccCCCCchhhHHHHhCCchhhHHHHHHHHHHhhcCCchhhccc
Q ss_pred chhHHHHHHHHHHhhCcHHHH-----HHHHHHHHHcCCCCchhhHHHHHHH--------hcCCCCcccHHHHHHHHHh--
Q 044770 94 NELLYNNLVIACLDKGVIKLS-----LEYMKKMRVLGHSISYLVFNRLIIL--------NSSPGRRKTIPNILRQMKA-- 158 (464)
Q Consensus 94 ~~~~~~~li~~~~~~~~~~~a-----~~~~~~m~~~~~~~~~~~~~~l~~~--------~~~~~~~~~a~~~~~~~~~-- 158 (464)
-+.-..++|..||+.++.+-. +.+++.+.... .|-..+||..... |...|++=...+++-+..+
T Consensus 91 vv~dlES~iTfYCK~Rn~~Y~~d~gWi~lL~pl~~L~-lprsd~fN~F~ai~~kYIPkdcrpkg~~Fh~FRLLlqYHdPe 169 (669)
T KOG3636|consen 91 VVSDLESFITFYCKKRNMDYIKDIGWITLLEPLLLLN-LPRSDEFNVFFAITTKYIPKDCRPKGQIFHLFRLLLQYHDPE 169 (669)
T ss_pred hhHhhhhHhhhhhhccCCcccccccHHHHHHHHHHhc-CCcchhhhhhHhhhhcccCCCCCCCCccchHHHHHHHhcCHH
Q ss_pred -------CCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCcHhHHHHHHHHHH--------hcChhhHHHHHH
Q 044770 159 -------DKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHA--------VARLYTVAETYV 223 (464)
Q Consensus 159 -------~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~--------~~~~~~~a~~~~ 223 (464)
..+.||..+.|-+...++..-..+-...+|+-..+.+ .|-.+-+-.+|-.-. +...-+++++++
T Consensus 170 lc~~LdtkkitPd~Y~lnWf~sLFas~~Stev~~a~WdlY~qqa-DPF~vffLaliiLiNake~ILq~~sdsKEe~ikfL 248 (669)
T KOG3636|consen 170 LCNHLDTKKITPDMYTLNWFASLFASSMSTEVCHALWDLYIQQA-DPFLVFFLALIILINAKEEILQVKSDSKEEAIKFL 248 (669)
T ss_pred HhhhhhccccCchHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC-CceehHHHHHHHhcccHHHHhhhccccHHHHHHHH
Q ss_pred HHHHhccCCCChhhHHHHHHHHHhh
Q 044770 224 EALEKSMTGNNWSTLDVLIILYGYL 248 (464)
Q Consensus 224 ~~~~~~~~~~~~~~~~~l~~~~~~~ 248 (464)
+.|...--..|..-+-.+...|+..
T Consensus 249 enmp~~L~~eDvpDffsLAqyY~~K 273 (669)
T KOG3636|consen 249 ENMPAQLSVEDVPDFFSLAQYYSDK 273 (669)
T ss_pred HcCchhcccccchhHHHHHHHHhhc
No 473
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=35.77 E-value=3.1e+02 Score=27.14 Aligned_cols=93 Identities=8% Similarity=0.003 Sum_probs=63.6
Q ss_pred HHHHHHHHHHhhCcHHHHHHHHHHHHHcCCCCc------hhhHHHHHHHhcCCCCcccHHHHHHHHHhCCCCCChhhHHH
Q 044770 97 LYNNLVIACLDKGVIKLSLEYMKKMRVLGHSIS------YLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHI 170 (464)
Q Consensus 97 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 170 (464)
.||..-+.+ +..++..+++.|..-... ++.| ...+..+--+|....+.|.|.+++++..+.. +.+..+--.
T Consensus 357 LWn~A~~~F-~~~~Y~~s~~~y~~Sl~~-i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d-~~~~l~q~~ 433 (872)
T KOG4814|consen 357 LWNTAKKLF-KMEKYVVSIRFYKLSLKD-IISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVD-RQSPLCQLL 433 (872)
T ss_pred HHHhhHHHH-HHHHHHHHHHHHHHHHHh-ccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhc-cccHHHHHH
Confidence 455544433 567788888888765542 2333 2235556667888889999999999998754 344445555
Q ss_pred HHHHHHccCChhHHHHHHHHHH
Q 044770 171 LMKIEANDHNIEGLMKVYSDMK 192 (464)
Q Consensus 171 l~~~~~~~~~~~~a~~~~~~m~ 192 (464)
+..+....+.-++|+.......
T Consensus 434 ~~~~~~~E~~Se~AL~~~~~~~ 455 (872)
T KOG4814|consen 434 MLQSFLAEDKSEEALTCLQKIK 455 (872)
T ss_pred HHHHHHHhcchHHHHHHHHHHH
Confidence 6677788888899988876654
No 474
>PF07064 RIC1: RIC1; InterPro: IPR009771 This entry represents RIC1 (Ribosomal control protein1) and has been identified in yeast as a Golgi protein involved in retrograde transport to the cis-Golgi network. It forms a heterodimer with Rgp1 and functions as a guanyl-nucleotide exchange factor [] which activates YPT6 by exchanging bound GDP for free GTP. RIC1 is thereby required for efficient fusion of endosome-derived vesicles with the Golgi. The RIC1-RGP1 complex participates in the recycling of SNC1, presumably by mediating fusion of endosomal vesicles with the Golgi compartment and may also be indirectly involved in the transcription of both ribosomal protein genes and ribosomal RNA [, , ].
Probab=35.72 E-value=2.9e+02 Score=23.86 Aligned_cols=155 Identities=15% Similarity=0.110 Sum_probs=0.0
Q ss_pred hHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCCchhHHHHHHHHHhhcCh-----HHHHHHhhhcCCCCCchhHHHHHHH
Q 044770 29 IFHSINRLRKLQLNKRALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGI-----SQGEKLFCCIPKDYQNELLYNNLVI 103 (464)
Q Consensus 29 ~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-----~~a~~~~~~~~~~~~~~~~~~~li~ 103 (464)
+..+++.+.+.+....|.++.+.+.. .+.=......++......... ......+.....--.....|-.++.
T Consensus 85 L~~iL~~lL~~~~~~~a~~i~~~y~~---l~~F~~~LE~LLh~vL~~e~~~~~~~~~~~~~L~~v~~ll~~f~~~l~Ivv 161 (258)
T PF07064_consen 85 LHHILRHLLRRNLDEEALEIASKYRS---LPYFSHALELLLHTVLEEEADSSEDSPIPDALLPRVISLLQEFPEYLEIVV 161 (258)
T ss_pred hHHHHHHHHhcCCcHHHHHHHHHhcc---CCCcHHHHHHHHHHHHhhcccccccccchHHHHHHHHHHHHcCcchHHHHH
Q ss_pred HHHhhCcHHHHHHHHHHHHHcCCCCchhhHHHHHHHhcCCCCcccHHHHHHHHHhCCCCCC------hhhHHHHHHHHHc
Q 044770 104 ACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPH------VSTFHILMKIEAN 177 (464)
Q Consensus 104 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~------~~~~~~l~~~~~~ 177 (464)
.|.+.=+...=-.+|+.. | .|. .|+.-|.+.|+++.|-.++--+...+-... ...-.-++.....
T Consensus 162 ~C~RKtE~~~W~~LF~~l---g-~P~-----dLf~~cl~~~~l~tAa~yLlVl~~~e~~~~~~~~~~~~~al~LL~~a~~ 232 (258)
T PF07064_consen 162 NCARKTEVRYWPYLFDYL---G-SPR-----DLFEECLENGNLKTAASYLLVLQNLEGSSVVKDEESRQCALRLLVMALE 232 (258)
T ss_pred HHHHhhHHHHHHHHHHhc---C-CHH-----HHHHHHHHcCcHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHh
Q ss_pred cCChhHHHHHHHHHHhCC
Q 044770 178 DHNIEGLMKVYSDMKRSE 195 (464)
Q Consensus 178 ~~~~~~a~~~~~~m~~~~ 195 (464)
.++|+-+.++.+-+..-+
T Consensus 233 ~~~w~Lc~eL~RFL~~ld 250 (258)
T PF07064_consen 233 SGDWDLCFELVRFLKALD 250 (258)
T ss_pred cccHHHHHHHHHHHHHhC
No 475
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=35.50 E-value=2.3e+02 Score=27.44 Aligned_cols=24 Identities=21% Similarity=0.159 Sum_probs=19.6
Q ss_pred hhCcHHHHHHHHHHHHHcCCCCch
Q 044770 107 DKGVIKLSLEYMKKMRVLGHSISY 130 (464)
Q Consensus 107 ~~~~~~~a~~~~~~m~~~~~~~~~ 130 (464)
..++...++..++++.+.|..|..
T Consensus 257 ~~~d~~~~~~~~~~l~~~G~~~~~ 280 (515)
T COG2812 257 LKGDAKEALRLINELIEEGKDPEA 280 (515)
T ss_pred HccCHHHHHHHHHHHHHhCcCHHH
Confidence 468899999999999998876654
No 476
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=35.41 E-value=3.5e+02 Score=26.85 Aligned_cols=88 Identities=9% Similarity=0.081 Sum_probs=60.5
Q ss_pred HHHHhhcchHHHHHHHHHHHHcCCCCCCc------hhHHHHHHHHHhhcChHHHHHHhhhcCCCCC-chhHHHHHHHHHH
Q 044770 34 NRLRKLQLNKRALEVMEWVIRERPYRPKE------LDYSYLLEFTIKNHGISQGEKLFCCIPKDYQ-NELLYNNLVIACL 106 (464)
Q Consensus 34 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~li~~~~ 106 (464)
....+..++..+++.|..-.+. ++.|. .....|--+|.+..++|.|.+++++..+..| +..+--.+..+..
T Consensus 362 ~~~F~~~~Y~~s~~~y~~Sl~~--i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~~~~~~ 439 (872)
T KOG4814|consen 362 KKLFKMEKYVVSIRFYKLSLKD--IISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLMLQSFL 439 (872)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh--ccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHH
Confidence 3444667888888888876652 22332 2345566677888899999999998887633 4455555666777
Q ss_pred hhCcHHHHHHHHHHHHH
Q 044770 107 DKGVIKLSLEYMKKMRV 123 (464)
Q Consensus 107 ~~~~~~~a~~~~~~m~~ 123 (464)
..|.-++|+........
T Consensus 440 ~E~~Se~AL~~~~~~~s 456 (872)
T KOG4814|consen 440 AEDKSEEALTCLQKIKS 456 (872)
T ss_pred HhcchHHHHHHHHHHHh
Confidence 78888888888776654
No 477
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=35.23 E-value=2.7e+02 Score=26.93 Aligned_cols=24 Identities=8% Similarity=0.153 Sum_probs=18.2
Q ss_pred hHHHHHHHHhhcchHHHHHHHHHH
Q 044770 29 IFHSINRLRKLQLNKRALEVMEWV 52 (464)
Q Consensus 29 ~~~~l~~~~~~~~~~~A~~~~~~~ 52 (464)
...++..|.+.+++++|..++..|
T Consensus 411 ~~eL~~~yl~~~qi~eAi~lL~sm 434 (545)
T PF11768_consen 411 LVELISQYLRCDQIEEAINLLLSM 434 (545)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHhC
Confidence 345777888888888888887766
No 478
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=34.86 E-value=3e+02 Score=23.78 Aligned_cols=86 Identities=10% Similarity=0.053 Sum_probs=43.4
Q ss_pred CCCCchhhHHHHHHHhhccCChHHHHHHHHHHHhccccCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCccHHHHH
Q 044770 264 LPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYR 343 (464)
Q Consensus 264 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~ 343 (464)
.+..++.....+...|.+.|++.+|+..|-.-.+ ++...+..++.-....|...++ |...-.
T Consensus 85 ~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~----~~~~~~~~ll~~~~~~~~~~e~--------------dlfi~R 146 (260)
T PF04190_consen 85 YKFGDPELHHLLAEKLWKEGNYYEAERHFLLGTD----PSAFAYVMLLEEWSTKGYPSEA--------------DLFIAR 146 (260)
T ss_dssp -TT--HHHHHHHHHHHHHTT-HHHHHHHHHTS-H----HHHHHHHHHHHHHHHHTSS--H--------------HHHHHH
T ss_pred CCCCCHHHHHHHHHHHHhhccHHHHHHHHHhcCC----hhHHHHHHHHHHHHHhcCCcch--------------hHHHHH
Confidence 3344555677778888888888888776643322 3332332233322223322222 222222
Q ss_pred HHHHHHHhcCChHHHHHHHHHhHHH
Q 044770 344 HLALGCFKSNLVEEGFKALELGMKL 368 (464)
Q Consensus 344 ~ll~~~~~~~~~~~a~~~~~~~~~~ 368 (464)
.++ -|...++...|...++...+.
T Consensus 147 aVL-~yL~l~n~~~A~~~~~~f~~~ 170 (260)
T PF04190_consen 147 AVL-QYLCLGNLRDANELFDTFTSK 170 (260)
T ss_dssp HHH-HHHHTTBHHHHHHHHHHHHHH
T ss_pred HHH-HHHHhcCHHHHHHHHHHHHHH
Confidence 333 355567888888888777654
No 479
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=34.83 E-value=4.1e+02 Score=25.38 Aligned_cols=41 Identities=12% Similarity=-0.053 Sum_probs=27.8
Q ss_pred hhcchHHHHHHHHHHHHcCCCCCCchhHHHHHHHHHhhcChH
Q 044770 38 KLQLNKRALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGIS 79 (464)
Q Consensus 38 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 79 (464)
..+.++..++++..+.. .|.......++.-...|.+.|...
T Consensus 29 ~~~~~d~cl~~l~~l~t-~~~~~~~v~~n~av~~~~kt~~tq 69 (696)
T KOG2471|consen 29 NNSEFDRCLELLQELET-RGESSGPVLHNRAVVSYYKTGCTQ 69 (696)
T ss_pred CCcchHHHHHHHHHHHh-ccccccceeeehhhHHHHhcccch
Confidence 45677888888888876 444455555777777777766543
No 480
>COG4259 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=34.73 E-value=1.7e+02 Score=20.77 Aligned_cols=16 Identities=25% Similarity=0.358 Sum_probs=6.6
Q ss_pred HHHhhcChhhHHHHHH
Q 044770 244 LYGYLAKGKDLERIWA 259 (464)
Q Consensus 244 ~~~~~~~~~~a~~~~~ 259 (464)
.|++.|+.+.+.+-|+
T Consensus 81 Lys~~G~~e~a~~eFe 96 (121)
T COG4259 81 LYSNSGKDEQAVREFE 96 (121)
T ss_pred HHhhcCChHHHHHHHH
Confidence 3444444444444333
No 481
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=34.69 E-value=4.6e+02 Score=25.90 Aligned_cols=63 Identities=10% Similarity=-0.054 Sum_probs=36.7
Q ss_pred CchhHHHHHHHHHhhcChHHHHHHhhhcCCCCCchhHHHHHHHHHHhhCcHHHHHHHHHHHHHcCC
Q 044770 61 KELDYSYLLEFTIKNHGISQGEKLFCCIPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGH 126 (464)
Q Consensus 61 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~ 126 (464)
....+..|+..+... +.+...++++++.. .+ ...+..++++....|-.....-+.+.+....+
T Consensus 309 ~~~~f~~lv~~lR~~-~~e~l~~l~~~~~~-~~-~~~r~~~~Dal~~~GT~~a~~~i~~~i~~~~~ 371 (574)
T smart00638 309 AAAKFLRLVRLLRTL-SEEQLEQLWRQLYE-KK-KKARRIFLDAVAQAGTPPALKFIKQWIKNKKI 371 (574)
T ss_pred hHHHHHHHHHHHHhC-CHHHHHHHHHHHHh-CC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCC
Confidence 344555555555433 55566666666543 12 56677777777777766665555555555443
No 482
>PF02607 B12-binding_2: B12 binding domain; InterPro: IPR003759 Cobalamin-dependent methionine synthase (2.1.1.13 from EC) is a large modular protein that catalyses methyl transfer from methyltetrahydrofolate (CH3-H4folate) to homocysteine. During the catalytic cycle, it supports three distinct methyl transfer reactions, each involving the cobalamin (vitamin B12) cofactor and a substrate bound to its own functional unit []. The cobalamin cofactor plays an essential role in this reaction, accepting the methyl group from CH3-H4folate to form methylcob(III)alamin, and in turn donating the methyl group to homocysteine to generate methionine and cob(I)alamin. Methionine synthase is a large enzyme composed of four structurally and functionally distinct modules: the first two modules bind homocysteine and CH3-H4folate, the third module binds the cobalamin cofactor and the C-terminal module binds S-adenosylmethionine. The cobalamin-binding module is composed of two structurally distinct domains: a 4-helical bundle cap domain (residues 651-740 in the Escherichia coli enzyme) and an alpha/beta B12-binding domain (residues 741-896) (IPR006158 from INTERPRO). The 4-helical bundle forms a cap over the alpha/beta domain, which acts to shield the methyl ligand of cobalamin from solvent []. Furthermore, in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO). The alpha/beta domain is a common cobalamin-binding motif, whereas the 4-helical bundle domain with its methyl cap is a distinctive feature of methionine synthases. This entry represents the 4-helical bundle cap domain. This domain is also present in other shorter proteins that bind to B12, and is always found N terminus to the alpha/beta B12-binding domain.; GO: 0008705 methionine synthase activity, 0031419 cobalamin binding, 0046872 metal ion binding, 0009086 methionine biosynthetic process; PDB: 3EZX_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 2I2X_P.
Probab=34.68 E-value=89 Score=20.67 Aligned_cols=39 Identities=23% Similarity=0.187 Sum_probs=25.8
Q ss_pred HhcCChhHHHHHHHHHHhCCCCccHHHHHHHHHHHHhcC
Q 044770 315 CKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSN 353 (464)
Q Consensus 315 ~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~ 353 (464)
...++.+.+.+++++..+.|..|.......+..+....|
T Consensus 12 l~~~d~~~~~~~~~~~l~~g~~~~~i~~~~l~p~m~~iG 50 (79)
T PF02607_consen 12 LLAGDEEEAEALLEEALAQGYPPEDIIEEILMPAMEEIG 50 (79)
T ss_dssp HHTT-CCHHHHHHHHHHHCSSSTTHHHHHTHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 345777888888888888787777666655555544433
No 483
>PRK09857 putative transposase; Provisional
Probab=34.45 E-value=3.3e+02 Score=24.09 Aligned_cols=66 Identities=12% Similarity=0.035 Sum_probs=31.9
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHhHHHHhhhhhcCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCc
Q 044770 342 YRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKY 415 (464)
Q Consensus 342 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~ 415 (464)
+..++......++.++-.++++... .. ..+.......+..-+...|.-+++.++..+|...|+.++
T Consensus 209 ~~~ll~Yi~~~~~~~~~~~~~~~l~-------~~-~~~~~e~iMTiAEqL~qeG~qe~~~~ia~~ml~~g~~~~ 274 (292)
T PRK09857 209 IKGLFNYILQTGDAVRFNDFIDGVA-------ER-SPKHKESLMTIAERLRQEGEQSKALHIAKIMLESGVPLA 274 (292)
T ss_pred HHHHHHHHhhccccchHHHHHHHHH-------Hh-CccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHH
Confidence 3344444444555555555555441 11 122222223444555555555566666666666666544
No 484
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=33.93 E-value=1.6e+02 Score=20.39 Aligned_cols=24 Identities=29% Similarity=0.214 Sum_probs=16.0
Q ss_pred HHHHHhcCChHHHHHHHHHhHHHH
Q 044770 346 ALGCFKSNLVEEGFKALELGMKLI 369 (464)
Q Consensus 346 l~~~~~~~~~~~a~~~~~~~~~~~ 369 (464)
.......|++++|...+++++++.
T Consensus 48 A~~~~~~G~~~~A~~~l~eAi~~A 71 (94)
T PF12862_consen 48 AELHRRFGHYEEALQALEEAIRLA 71 (94)
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHH
Confidence 334556678888888888776543
No 485
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=33.86 E-value=3.4e+02 Score=26.09 Aligned_cols=73 Identities=11% Similarity=0.111 Sum_probs=41.5
Q ss_pred hhCcHHHHHHHHHHHHHcCCCCchhhHHHHHHHhcCCCCcccHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhHHHH
Q 044770 107 DKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMK 186 (464)
Q Consensus 107 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 186 (464)
..|+...|+.+++.....+ ....++..+...+ | ..+...+..++......+....|+.
T Consensus 212 S~Gd~RdAL~lLeq~i~~~--~~~it~~~V~~~l-------------------g-~~~~~~~~~l~~si~~~d~~~~al~ 269 (484)
T PRK14956 212 GDGSVRDMLSFMEQAIVFT--DSKLTGVKIRKMI-------------------G-YHGIEFLTSFIKSLIDPDNHSKSLE 269 (484)
T ss_pred cCChHHHHHHHHHHHHHhC--CCCcCHHHHHHHh-------------------C-CCCHHHHHHHHHHHHcCCcHHHHHH
Confidence 4588888888888765421 1112222222111 3 2344455556665555555567888
Q ss_pred HHHHHHhCCCCCcHh
Q 044770 187 VYSDMKRSEVEPNEV 201 (464)
Q Consensus 187 ~~~~m~~~~~~p~~~ 201 (464)
++++|.+.|..|...
T Consensus 270 ~l~~l~~~G~d~~~~ 284 (484)
T PRK14956 270 ILESLYQEGQDIYKF 284 (484)
T ss_pred HHHHHHHcCCCHHHH
Confidence 888888877666543
No 486
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=33.65 E-value=4.8e+02 Score=25.79 Aligned_cols=26 Identities=8% Similarity=0.190 Sum_probs=18.6
Q ss_pred hhHHHHHHHHHHhhCcHHHHHHHHHHH
Q 044770 95 ELLYNNLVIACLDKGVIKLSLEYMKKM 121 (464)
Q Consensus 95 ~~~~~~li~~~~~~~~~~~a~~~~~~m 121 (464)
...|+ .+..+.-.|.++.|.+++...
T Consensus 149 p~FW~-~v~~lvlrG~~~~a~~lL~~~ 174 (566)
T PF07575_consen 149 PDFWD-YVQRLVLRGLFDQARQLLRLH 174 (566)
T ss_dssp HHHHH-HHHHHHHTT-HHHHHHHH-TT
T ss_pred hhHHH-HHHHHHHcCCHHHHHHHHHhc
Confidence 45565 678888899999999998443
No 487
>TIGR01503 MthylAspMut_E methylaspartate mutase, E subunit. This model represents the E (epsilon) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=33.20 E-value=2.3e+02 Score=26.65 Aligned_cols=24 Identities=8% Similarity=-0.115 Sum_probs=16.0
Q ss_pred HHHHHHHhhCcHHHHHHHHHHHHH
Q 044770 100 NLVIACLDKGVIKLSLEYMKKMRV 123 (464)
Q Consensus 100 ~li~~~~~~~~~~~a~~~~~~m~~ 123 (464)
.-|+.|.+.+++++|...+++-.+
T Consensus 91 ~TIDSyTR~n~y~~A~~~l~~s~~ 114 (480)
T TIGR01503 91 STIDAYTRQNRYDEAAVGIKESIK 114 (480)
T ss_pred eeeecccccccHHHHHHHHHhhhh
Confidence 345667777777777777766654
No 488
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=32.80 E-value=3.1e+02 Score=23.29 Aligned_cols=58 Identities=17% Similarity=0.170 Sum_probs=36.0
Q ss_pred HHHHHHHHhcChhhHHHHHHHHHHhccCCCChhhHHHHHHHHHh-hcChhhHHHHHHHh
Q 044770 204 CILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGY-LAKGKDLERIWATV 261 (464)
Q Consensus 204 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~ 261 (464)
..+++.+-+.++++++..+++++...+...+..--+.+..+|-. .|....+.+++..+
T Consensus 5 i~~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~ 63 (236)
T PF00244_consen 5 IYLAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVIGSRRASWRILSSI 63 (236)
T ss_dssp HHHHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhccccchHHHHhhhhH
Confidence 34566677889999999999999888777776666666666533 23334444444433
No 489
>COG4003 Uncharacterized protein conserved in archaea [Function unknown]
Probab=32.54 E-value=86 Score=21.02 Aligned_cols=26 Identities=15% Similarity=0.262 Sum_probs=23.5
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHHcC
Q 044770 386 SIIEIFAEKGDVGNAENLFEELKKAN 411 (464)
Q Consensus 386 ~li~~~~~~g~~~~A~~~~~~m~~~~ 411 (464)
++++.+.+|.-.++|+++++-|.++|
T Consensus 36 tV~D~L~rCdT~EEAlEii~yleKrG 61 (98)
T COG4003 36 TVIDFLRRCDTEEEALEIINYLEKRG 61 (98)
T ss_pred hHHHHHHHhCcHHHHHHHHHHHHHhC
Confidence 56788899999999999999999987
No 490
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=32.43 E-value=4.1e+02 Score=24.60 Aligned_cols=57 Identities=12% Similarity=0.021 Sum_probs=39.2
Q ss_pred HHHhhccCChHHHHHHHHHHHhccccCChh--hHHHHHHHHHh--cCChhHHHHHHHHHHhC
Q 044770 276 IEAFGRIAQVSRAEELWLEMQSVKQLKATE--QYNSVISVYCK--NGFIDKASGLLKEMSMN 333 (464)
Q Consensus 276 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~--~~~~li~~~~~--~~~~~~a~~~~~~m~~~ 333 (464)
+..+.+.+++..|.++|+.+... ++++.. .+..+..+|.. .-++.+|.+.++.....
T Consensus 138 a~~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 138 AKELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 34455788999999999999886 444443 45555566654 35667888888877654
No 491
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=32.33 E-value=31 Score=30.57 Aligned_cols=95 Identities=11% Similarity=-0.110 Sum_probs=59.1
Q ss_pred hcChhhHHHHHHHHHHhccCCCChhhHHHHHHHHHhhcChhhHHHHHHHhccCCCCchhhHHHHHHHhhccCChHHHHHH
Q 044770 212 VARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEEL 291 (464)
Q Consensus 212 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 291 (464)
..|.++.|++.|...+.. -++....|..-.+++.+.++...+++=++.....++.....|-.-..+-...|++++|.+.
T Consensus 126 n~G~~~~ai~~~t~ai~l-np~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~d 204 (377)
T KOG1308|consen 126 NDGEFDTAIELFTSAIEL-NPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAHD 204 (377)
T ss_pred cCcchhhhhccccccccc-CCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHHH
Confidence 456677777777666554 2233444444455566667777777766666665555555555555555667888888888
Q ss_pred HHHHHhccccCChhhH
Q 044770 292 WLEMQSVKQLKATEQY 307 (464)
Q Consensus 292 ~~~~~~~~~~~~~~~~ 307 (464)
|....+.+..+....|
T Consensus 205 l~~a~kld~dE~~~a~ 220 (377)
T KOG1308|consen 205 LALACKLDYDEANSAT 220 (377)
T ss_pred HHHHHhccccHHHHHH
Confidence 8888776665544333
No 492
>TIGR01503 MthylAspMut_E methylaspartate mutase, E subunit. This model represents the E (epsilon) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=32.22 E-value=3e+02 Score=26.04 Aligned_cols=110 Identities=15% Similarity=0.088 Sum_probs=54.4
Q ss_pred hhhHHHHHHHhccCCCCchhhHHHHHHHhhccCChHHHHHHHHHHHhcc------ccC---ChhhHHHHHHHH-----Hh
Q 044770 251 GKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVK------QLK---ATEQYNSVISVY-----CK 316 (464)
Q Consensus 251 ~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~------~~~---~~~~~~~li~~~-----~~ 316 (464)
+++-.++++.+.+....+. ...-|++|.+.+++++|...+++-.+.| .+. ...+...++... .+
T Consensus 70 ~~e~i~lL~~l~~~g~ad~--lp~TIDSyTR~n~y~~A~~~l~~s~~~~~s~LNGfP~VnhGv~~~R~l~~~v~~PvQvR 147 (480)
T TIGR01503 70 LDEHIELLRTLQEEGGADF--LPSTIDAYTRQNRYDEAAVGIKESIKAGRSLLNGFPGVNHGVKGCRKVLEAVNLPLQIR 147 (480)
T ss_pred HHHHHHHHHHHHHccCCCc--cceeeecccccccHHHHHHHHHhhhhcCcccccCCCcccccHHHHHHHHHhCCCCeecc
Confidence 4445555555555433332 3355777788888888888777665522 111 122233333322 22
Q ss_pred cCChhHHHHHHHHHHhCCCCcc---HHHHHHHHHHHHhcCChHHHHHHHHHhH
Q 044770 317 NGFIDKASGLLKEMSMNGCKPN---AITYRHLALGCFKSNLVEEGFKALELGM 366 (464)
Q Consensus 317 ~~~~~~a~~~~~~m~~~g~~p~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 366 (464)
+|. ..+..+++-+...|+.-. ..+|+. -|++.--+++++..|+.+-
T Consensus 148 HGt-pDarlL~e~~~a~G~~a~EGG~ISYnl---PYsK~vpLe~si~~Wqyvd 196 (480)
T TIGR01503 148 HGT-PDARLLAEIILAGGFTSFEGGGISYNI---PYAKNVTLEKSLEDWQYCD 196 (480)
T ss_pred CCC-CcHHHHHHHHHHcCCCccCCCcceecc---ccCCCCCHHHHHHHHHHHH
Confidence 332 345666666666664322 233332 2334445566666665443
No 493
>KOG1498 consensus 26S proteasome regulatory complex, subunit RPN5/PSMD12 [Posttranslational modification, protein turnover, chaperones]
Probab=31.78 E-value=4.2e+02 Score=24.48 Aligned_cols=166 Identities=12% Similarity=0.104 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHcCCCCCCchhHHHHHHHHHhhcChHHHHHHhhhcCCCCCchhHHHHHHHHHHhhCcHHHHHHHH--H
Q 044770 42 NKRALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQGEKLFCCIPKDYQNELLYNNLVIACLDKGVIKLSLEYM--K 119 (464)
Q Consensus 42 ~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~--~ 119 (464)
.+.-+.+=+++........+..+...++..|...++++.--+....+.. +.|+...|+..+ +
T Consensus 32 ie~Ll~~EkqtR~~~D~~s~~kv~~~i~~lc~~~~~w~~Lne~i~~Lsk----------------krgqlk~ai~~Mvq~ 95 (439)
T KOG1498|consen 32 IEELLNLEKQTRLASDMASNTKVLEEIMKLCFSAKDWDLLNEQIRLLSK----------------KRGQLKQAIQSMVQQ 95 (439)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHH----------------HhhHHHHHHHHHHHH
Q ss_pred HHHHcCCCCchhhHHHHHHHhcC-------------------------CCCcccHHHHHHHHHhCCCCCChhhHHHH---
Q 044770 120 KMRVLGHSISYLVFNRLIILNSS-------------------------PGRRKTIPNILRQMKADKVAPHVSTFHIL--- 171 (464)
Q Consensus 120 ~m~~~~~~~~~~~~~~l~~~~~~-------------------------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l--- 171 (464)
-|.-..-.||..+--.++..+.. .|++++|..++. ...+.||.++
T Consensus 96 ~~~y~~~~~d~~~k~~li~tLr~VtegkIyvEvERarlTk~L~~ike~~Gdi~~Aa~il~-------el~VETygsm~~~ 168 (439)
T KOG1498|consen 96 AMTYIDGTPDLETKIKLIETLRTVTEGKIYVEVERARLTKMLAKIKEEQGDIAEAADILC-------ELQVETYGSMEKS 168 (439)
T ss_pred HHHhccCCCCchhHHHHHHHHHHhhcCceEEeehHHHHHHHHHHHHHHcCCHHHHHHHHH-------hcchhhhhhhHHH
Q ss_pred ---------HHHHHccCChhHHHHHHHHHHhCCCCCcHhH------HHHHHHHHHhcChhhHHHHHHHHHHhcc
Q 044770 172 ---------MKIEANDHNIEGLMKVYSDMKRSEVEPNEVS------YCILATAHAVARLYTVAETYVEALEKSM 230 (464)
Q Consensus 172 ---------~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~------~~~li~~~~~~~~~~~a~~~~~~~~~~~ 230 (464)
++.|...+++-.|.-+-.+....-+..+... |+.+++.....+.+-.+.+.|+.+...|
T Consensus 169 ekV~fiLEQmrKOG~~~D~vra~i~skKI~~K~F~~~~~~~lKlkyY~lmI~l~lh~~~Yl~v~~~Yraiy~t~ 242 (439)
T KOG1498|consen 169 EKVAFILEQMRLCLLRLDYVRAQIISKKINKKFFEKPDVQELKLKYYELMIRLGLHDRAYLNVCRSYRAIYDTG 242 (439)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHhhHHhcCCccHHHHHHHHHHHHHHhcccccchhhHHHHHHHHhccc
No 494
>PF02607 B12-binding_2: B12 binding domain; InterPro: IPR003759 Cobalamin-dependent methionine synthase (2.1.1.13 from EC) is a large modular protein that catalyses methyl transfer from methyltetrahydrofolate (CH3-H4folate) to homocysteine. During the catalytic cycle, it supports three distinct methyl transfer reactions, each involving the cobalamin (vitamin B12) cofactor and a substrate bound to its own functional unit []. The cobalamin cofactor plays an essential role in this reaction, accepting the methyl group from CH3-H4folate to form methylcob(III)alamin, and in turn donating the methyl group to homocysteine to generate methionine and cob(I)alamin. Methionine synthase is a large enzyme composed of four structurally and functionally distinct modules: the first two modules bind homocysteine and CH3-H4folate, the third module binds the cobalamin cofactor and the C-terminal module binds S-adenosylmethionine. The cobalamin-binding module is composed of two structurally distinct domains: a 4-helical bundle cap domain (residues 651-740 in the Escherichia coli enzyme) and an alpha/beta B12-binding domain (residues 741-896) (IPR006158 from INTERPRO). The 4-helical bundle forms a cap over the alpha/beta domain, which acts to shield the methyl ligand of cobalamin from solvent []. Furthermore, in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO). The alpha/beta domain is a common cobalamin-binding motif, whereas the 4-helical bundle domain with its methyl cap is a distinctive feature of methionine synthases. This entry represents the 4-helical bundle cap domain. This domain is also present in other shorter proteins that bind to B12, and is always found N terminus to the alpha/beta B12-binding domain.; GO: 0008705 methionine synthase activity, 0031419 cobalamin binding, 0046872 metal ion binding, 0009086 methionine biosynthetic process; PDB: 3EZX_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 2I2X_P.
Probab=31.41 E-value=1.1e+02 Score=20.16 Aligned_cols=39 Identities=26% Similarity=0.265 Sum_probs=32.0
Q ss_pred hcCChhhHHHHHHHHHHcCCCCcHHHHHHHHHHHHHcCC
Q 044770 393 EKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKI 431 (464)
Q Consensus 393 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~ 431 (464)
-.|+.+.+.+++++..+.|++|.....+.+..+..+-|+
T Consensus 13 ~~~d~~~~~~~~~~~l~~g~~~~~i~~~~l~p~m~~iG~ 51 (79)
T PF02607_consen 13 LAGDEEEAEALLEEALAQGYPPEDIIEEILMPAMEEIGE 51 (79)
T ss_dssp HTT-CCHHHHHHHHHHHCSSSTTHHHHHTHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 468999999999999998988888888778888777763
No 495
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=31.00 E-value=3.3e+02 Score=23.13 Aligned_cols=62 Identities=15% Similarity=0.019 Sum_probs=35.1
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHhHHHHhhhhhcCCCCcHHHHHH----HHHHHHh--cCChhhHHHHHHHHHHc
Q 044770 342 YRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLS----IIEIFAE--KGDVGNAENLFEELKKA 410 (464)
Q Consensus 342 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~p~~~~~~~----li~~~~~--~g~~~~A~~~~~~m~~~ 410 (464)
+.-+...-+..+++.+|+.+|++. .......+..-|+. +-.++|. .++.-.+...+++..+.
T Consensus 157 ~lKvA~yaa~leqY~~Ai~iyeqv-------a~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~ 224 (288)
T KOG1586|consen 157 LLKVAQYAAQLEQYSKAIDIYEQV-------ARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQEL 224 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-------HHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhc
Confidence 333444456678999999999998 33444443333331 1112222 25666667777777664
No 496
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=30.07 E-value=1.9e+02 Score=27.27 Aligned_cols=106 Identities=13% Similarity=-0.061 Sum_probs=72.2
Q ss_pred HHHHHHHHhhcchHHHHHHHHHHHHcCCCCCCchh-HHHHHHHHHhhcChHHHHHHhhhcCCCCC-chhHHHHHHHHHHh
Q 044770 30 FHSINRLRKLQLNKRALEVMEWVIRERPYRPKELD-YSYLLEFTIKNHGISQGEKLFCCIPKDYQ-NELLYNNLVIACLD 107 (464)
Q Consensus 30 ~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~li~~~~~ 107 (464)
..-+..+...+.++.|+.++..+++. .|+-.. |..-..++.+.+++..|+.=+....+..| ....|-.-..++.+
T Consensus 8 k~ean~~l~~~~fd~avdlysKaI~l---dpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~ 84 (476)
T KOG0376|consen 8 KNEANEALKDKVFDVAVDLYSKAIEL---DPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMA 84 (476)
T ss_pred hhHHhhhcccchHHHHHHHHHHHHhc---CCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHh
Confidence 34455666778899999999999883 454433 34444677888888888777777666533 23455555566777
Q ss_pred hCcHHHHHHHHHHHHHcCCCCchhhHHHHHHHh
Q 044770 108 KGVIKLSLEYMKKMRVLGHSISYLVFNRLIILN 140 (464)
Q Consensus 108 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~ 140 (464)
.+.+.+|+..|+.... +.|+..-....+.-|
T Consensus 85 l~~~~~A~~~l~~~~~--l~Pnd~~~~r~~~Ec 115 (476)
T KOG0376|consen 85 LGEFKKALLDLEKVKK--LAPNDPDATRKIDEC 115 (476)
T ss_pred HHHHHHHHHHHHHhhh--cCcCcHHHHHHHHHH
Confidence 7788888888887776 467766666665544
No 497
>KOG3677 consensus RNA polymerase I-associated factor - PAF67 [Translation, ribosomal structure and biogenesis; Transcription]
Probab=28.79 E-value=4.6e+02 Score=24.43 Aligned_cols=211 Identities=13% Similarity=0.085 Sum_probs=0.0
Q ss_pred HHHHHHhcCCCCcccHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhC--CCCCcHhHHHHHHHHHH
Q 044770 134 NRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRS--EVEPNEVSYCILATAHA 211 (464)
Q Consensus 134 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~--~~~p~~~~~~~li~~~~ 211 (464)
+..+.++...++.+.....|-...-.. .....+.-.|++...-.|+.....+.++.|... |..|....-..+.-+|.
T Consensus 205 ~~ql~~~~s~~dp~~va~~~g~s~~y~-~LgyfsL~GLlR~H~lLgDhQat~q~idi~pk~iy~t~p~c~VTY~VGFayL 283 (525)
T KOG3677|consen 205 SIQLTASVSNKDPALVALIFGASQPYA-NLGYFSLLGLLRMHILLGDHQATSQILDIMPKEIYGTEPMCRVTYQVGFAYL 283 (525)
T ss_pred HHHHHHHhcCCChhhhhhhhccccHHH-hhhHHHHHHHHHHHHHhhhhHhhhhhhhcCchhhcCcccceeEeeehhHHHH
Q ss_pred hcChhhHHHHHHHHHHhccCCCChhhHHHHHHHHHhhcC-hhhHHHHHHHhcc-CCCCchhhHHHHHHHhh-------cc
Q 044770 212 VARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAK-GKDLERIWATVQE-LPNVRSKSYVLAIEAFG-------RI 282 (464)
Q Consensus 212 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~-~~~~~~~~~~~l~~~~~-------~~ 282 (464)
-.|++.+|.+.|-.++-. +......+...--.+...++ .+....++..... .|..-..++.+.+.-++ .+
T Consensus 284 mmrryadai~~F~niLly-Iqrtks~~~~~~y~~d~inKq~eqm~~llai~l~~yPq~iDESi~s~l~Ek~~d~ml~mqn 362 (525)
T KOG3677|consen 284 MMRRYADAIRVFLNILLY-IQRTKSMFSRTTYQYDMINKQNEQMHHLLAICLSMYPQMIDESIHSQLAEKYGDKMLPMQN 362 (525)
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHhhhcchhhhHhhhhhhHHHHHHHHHHHHHhCchhhhHHHHHHHHHHhcchhhhhhc
Q ss_pred CChHHHHHHHHHHHhccccCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCccHHHHHHHH
Q 044770 283 AQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLA 346 (464)
Q Consensus 283 g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll 346 (464)
|+.+.-..+|--....-..|.+..|..+..-|.+.--.......+++...+.--|....|..+.
T Consensus 363 g~~q~~ks~f~y~cpkflsp~~~~~dgv~~~y~kePl~~qlq~fld~v~qq~dl~~~rsylkly 426 (525)
T KOG3677|consen 363 GDPQVFKSLFSYLCPKFLSPVVPNYDGVLPNYHKEPLLQQLQVFLDEVSQQADLPTIRSYLKLY 426 (525)
T ss_pred CChHHHHHHHHHcCccccCCCCcccccccccccccHHHHHHHHHhHHHhhhccchHHHHHHHHH
No 498
>PHA03100 ankyrin repeat protein; Provisional
Probab=28.71 E-value=5.2e+02 Score=24.64 Aligned_cols=13 Identities=23% Similarity=0.519 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHcC
Q 044770 418 VYNTLIKAYVKAK 430 (464)
Q Consensus 418 ~~~~li~~~~~~g 430 (464)
.|..+|+-.....
T Consensus 413 ~Y~~~i~~~i~~~ 425 (480)
T PHA03100 413 IYGKYIKKVINKA 425 (480)
T ss_pred HHHHHHHHHHHHH
Confidence 3555555544443
No 499
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=28.42 E-value=3.3e+02 Score=22.27 Aligned_cols=91 Identities=18% Similarity=0.121 Sum_probs=54.4
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCccHHHHHHHHHHHHhcCChHHHHHHHHHhHHHHhhh-------hhcCCC
Q 044770 306 QYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTK-------KVRSST 378 (464)
Q Consensus 306 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-------~~~~~~ 378 (464)
.|.....+-++.-+.+++.+.+- ...=.+++-.|.+..++.++..+++.+-++...- ...+..
T Consensus 109 PFceFAetV~k~~q~~e~dK~~L----------GRiGiS~m~~Yhk~~qW~KGrkvLd~l~el~i~ft~LKGL~g~e~~a 178 (233)
T PF14669_consen 109 PFCEFAETVCKDPQNDEVDKTLL----------GRIGISLMYSYHKTLQWSKGRKVLDKLHELQIHFTSLKGLTGPEKLA 178 (233)
T ss_pred CHHHHHHHHhcCCccchhhhhhh----------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCccCccccC
Confidence 46666666555544444332221 1122345566777777888888887775432211 112233
Q ss_pred CcHHHHHHHHHHHHhcCChhhHHHHHHH
Q 044770 379 PWLETTLSIIEIFAEKGDVGNAENLFEE 406 (464)
Q Consensus 379 p~~~~~~~li~~~~~~g~~~~A~~~~~~ 406 (464)
+--...|.....+.++|.++.|..++++
T Consensus 179 srCqivn~AaEiFL~sgsidGA~~vLre 206 (233)
T PF14669_consen 179 SRCQIVNIAAEIFLKSGSIDGALWVLRE 206 (233)
T ss_pred chhhhHHHHHHHHHHcCCchHHHHHHhc
Confidence 4445567888889999999999999874
No 500
>PF05944 Phage_term_smal: Phage small terminase subunit; InterPro: IPR010270 This entry is represented by Bacteriophage P2, GpM. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several phage small terminase subunit proteins as well as some related bacterial sequences []. M protein is probably an endonuclease which directs cos cleavage. The Q, P and M proteins are needed to package DNA into proheads and for the conversion of proheads to capsids.; GO: 0003677 DNA binding, 0004519 endonuclease activity, 0019069 viral capsid assembly
Probab=27.43 E-value=2e+02 Score=21.80 Aligned_cols=27 Identities=0% Similarity=-0.117 Sum_probs=14.8
Q ss_pred hHHHHHHHHHhhcChHHHHHHhhhcCC
Q 044770 64 DYSYLLEFTIKNHGISQGEKLFCCIPK 90 (464)
Q Consensus 64 ~~~~l~~~~~~~g~~~~a~~~~~~~~~ 90 (464)
++..++-.+...|+++.|+++.+-...
T Consensus 50 Vl~~~mvW~~D~Gd~~~AL~~a~yAi~ 76 (132)
T PF05944_consen 50 VLMTVMVWLFDVGDFDGALDIAEYAIE 76 (132)
T ss_pred hHHhhHhhhhcccCHHHHHHHHHHHHH
Confidence 444455555566666666666555433
Done!