Query 044770
Match_columns 464
No_of_seqs 649 out of 1764
Neff 11.7
Searched_HMMs 29240
Date Mon Mar 25 11:17:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044770.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/044770hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xpi_A Anaphase-promoting comp 100.0 3.8E-38 1.3E-42 306.4 37.5 408 25-443 83-579 (597)
2 2xpi_A Anaphase-promoting comp 100.0 1.4E-37 4.7E-42 302.5 40.0 400 9-426 102-594 (597)
3 4g26_A Pentatricopeptide repea 100.0 5.3E-33 1.8E-37 259.2 22.6 214 184-429 9-223 (501)
4 4g26_A Pentatricopeptide repea 100.0 1.3E-32 4.6E-37 256.5 23.5 184 270-460 27-221 (501)
5 1w3b_A UDP-N-acetylglucosamine 100.0 7.9E-29 2.7E-33 227.4 43.1 380 32-430 5-387 (388)
6 1w3b_A UDP-N-acetylglucosamine 100.0 1.1E-26 3.9E-31 213.1 41.4 371 68-456 5-380 (388)
7 2gw1_A Mitochondrial precursor 99.9 2.9E-24 1E-28 204.7 35.6 407 26-443 6-478 (514)
8 2gw1_A Mitochondrial precursor 99.9 4.5E-23 1.5E-27 196.5 36.8 382 63-459 7-459 (514)
9 2y4t_A DNAJ homolog subfamily 99.9 3.5E-23 1.2E-27 193.8 34.6 316 22-346 22-370 (450)
10 2y4t_A DNAJ homolog subfamily 99.9 1.3E-22 4.6E-27 189.8 34.8 314 93-424 24-371 (450)
11 3fp2_A TPR repeat-containing p 99.9 2.7E-22 9.1E-27 192.2 33.0 405 24-444 23-492 (537)
12 3fp2_A TPR repeat-containing p 99.9 3.5E-20 1.2E-24 177.5 37.3 388 5-411 39-492 (537)
13 3ieg_A DNAJ homolog subfamily 99.9 1.6E-19 5.6E-24 163.3 35.7 314 95-426 3-350 (359)
14 3ieg_A DNAJ homolog subfamily 99.9 9.2E-20 3.1E-24 165.0 33.4 315 25-347 2-348 (359)
15 3hym_B Cell division cycle pro 99.9 2.4E-19 8.1E-24 160.3 28.3 301 21-355 17-321 (330)
16 3hym_B Cell division cycle pro 99.9 1.2E-18 4.2E-23 155.6 31.2 291 94-398 21-322 (330)
17 1fch_A Peroxisomal targeting s 99.9 2.9E-19 1E-23 162.4 25.8 292 73-368 36-359 (368)
18 2ooe_A Cleavage stimulation fa 99.8 2.4E-17 8.2E-22 157.2 39.2 406 23-443 10-492 (530)
19 4eqf_A PEX5-related protein; a 99.8 1.6E-19 5.5E-24 164.0 22.0 285 76-365 45-353 (365)
20 1fch_A Peroxisomal targeting s 99.8 2.5E-19 8.7E-24 162.8 21.5 291 36-329 35-355 (368)
21 1b89_A Protein (clathrin heavy 99.8 1.1E-19 3.7E-24 161.8 18.0 348 7-410 19-385 (449)
22 2xm6_A Protein corresponding t 99.8 1.5E-16 5.1E-21 150.2 40.6 355 23-412 36-434 (490)
23 3spa_A Mtrpol, DNA-directed RN 99.8 5.5E-20 1.9E-24 176.7 11.7 118 305-429 128-249 (1134)
24 4eqf_A PEX5-related protein; a 99.8 2.5E-18 8.5E-23 156.1 22.1 274 129-406 64-352 (365)
25 2xm6_A Protein corresponding t 99.8 1.5E-15 5.1E-20 143.3 40.9 364 45-446 26-435 (490)
26 3spa_A Mtrpol, DNA-directed RN 99.8 1E-19 3.6E-24 174.8 11.1 121 335-459 123-246 (1134)
27 3cv0_A Peroxisome targeting si 99.8 1.3E-17 4.5E-22 148.8 24.1 269 96-369 22-316 (327)
28 1b89_A Protein (clathrin heavy 99.8 8.4E-19 2.9E-23 156.1 14.7 239 38-316 15-253 (449)
29 3cv0_A Peroxisome targeting si 99.8 6.8E-18 2.3E-22 150.6 20.7 280 25-331 20-313 (327)
30 2ooe_A Cleavage stimulation fa 99.8 1.3E-15 4.3E-20 145.4 37.4 379 49-444 2-455 (530)
31 4g1t_A Interferon-induced prot 99.8 6.5E-16 2.2E-20 145.3 32.9 379 26-443 51-459 (472)
32 3mkr_A Coatomer subunit epsilo 99.8 1.3E-16 4.6E-21 139.0 26.1 246 74-332 11-263 (291)
33 3mkr_A Coatomer subunit epsilo 99.8 8.5E-17 2.9E-21 140.2 23.2 274 33-325 6-286 (291)
34 4g1t_A Interferon-induced prot 99.8 3.4E-15 1.2E-19 140.4 33.5 333 60-421 49-410 (472)
35 1xi4_A Clathrin heavy chain; a 99.8 1.3E-14 4.4E-19 144.4 37.2 347 23-431 982-1329(1630)
36 1xi4_A Clathrin heavy chain; a 99.7 1.4E-13 4.7E-18 137.1 38.4 341 31-430 1054-1415(1630)
37 3uq3_A Heat shock protein STI1 99.7 3.6E-15 1.2E-19 127.9 21.0 225 95-332 5-235 (258)
38 3uq3_A Heat shock protein STI1 99.7 8E-15 2.7E-19 125.8 22.2 228 130-370 5-238 (258)
39 3e4b_A ALGK; tetratricopeptide 99.7 8.5E-14 2.9E-18 129.4 28.6 349 30-412 7-389 (452)
40 2pl2_A Hypothetical conserved 99.7 1.7E-14 5.7E-19 120.1 20.7 199 162-365 2-211 (217)
41 2pl2_A Hypothetical conserved 99.7 7.7E-15 2.6E-19 122.2 18.3 206 61-294 4-210 (217)
42 1xnf_A Lipoprotein NLPI; TPR, 99.6 6.1E-15 2.1E-19 127.9 17.4 130 95-228 43-172 (275)
43 3u4t_A TPR repeat-containing p 99.6 1E-13 3.4E-18 120.0 24.2 250 170-425 8-264 (272)
44 3u4t_A TPR repeat-containing p 99.6 4.6E-14 1.6E-18 122.1 21.8 200 25-229 2-208 (272)
45 1xnf_A Lipoprotein NLPI; TPR, 99.6 2.2E-14 7.6E-19 124.3 19.0 247 107-362 17-269 (275)
46 2ho1_A Type 4 fimbrial biogene 99.6 1.2E-13 4E-18 118.1 22.3 200 95-332 37-237 (252)
47 4e6h_A MRNA 3'-END-processing 99.6 2E-11 6.7E-16 117.4 39.4 429 13-456 54-581 (679)
48 2h6f_A Protein farnesyltransfe 99.6 1.9E-13 6.6E-18 123.1 24.0 247 95-349 97-363 (382)
49 3sf4_A G-protein-signaling mod 99.6 1.7E-14 5.7E-19 132.7 17.5 299 96-398 10-364 (406)
50 2ho1_A Type 4 fimbrial biogene 99.6 1.7E-13 6E-18 117.0 22.4 199 62-263 37-237 (252)
51 3e4b_A ALGK; tetratricopeptide 99.6 1.8E-13 6E-18 127.2 24.1 346 67-445 8-389 (452)
52 2h6f_A Protein farnesyltransfe 99.6 2.6E-13 9E-18 122.2 24.4 230 63-297 98-347 (382)
53 1ouv_A Conserved hypothetical 99.6 3.3E-12 1.1E-16 110.5 30.0 223 165-411 6-252 (273)
54 4a1s_A PINS, partner of inscut 99.6 2.2E-14 7.4E-19 132.3 17.1 283 95-410 48-372 (411)
55 2vq2_A PILW, putative fimbrial 99.6 6.9E-13 2.4E-17 111.0 24.5 206 203-419 11-218 (225)
56 2vq2_A PILW, putative fimbrial 99.6 4.5E-13 1.5E-17 112.1 23.3 134 94-229 7-142 (225)
57 3sf4_A G-protein-signaling mod 99.6 3.7E-14 1.3E-18 130.4 17.9 301 127-431 6-362 (406)
58 2q7f_A YRRB protein; TPR, prot 99.6 4.5E-14 1.6E-18 119.9 16.9 195 63-261 24-219 (243)
59 1ouv_A Conserved hypothetical 99.6 1.2E-12 4.1E-17 113.3 25.9 223 94-333 5-251 (273)
60 2q7f_A YRRB protein; TPR, prot 99.6 1.2E-13 4.2E-18 117.2 19.3 199 131-333 24-222 (243)
61 3ro2_A PINS homolog, G-protein 99.6 6.6E-14 2.2E-18 125.0 17.3 283 96-410 6-332 (338)
62 4a1s_A PINS, partner of inscut 99.6 6.3E-14 2.2E-18 129.2 15.4 276 63-368 49-372 (411)
63 3ulq_A Response regulator aspa 99.5 3.5E-13 1.2E-17 122.9 18.2 302 36-370 22-370 (383)
64 3ulq_A Response regulator aspa 99.5 2.1E-12 7.2E-17 117.7 23.2 229 171-409 109-367 (383)
65 3ro2_A PINS homolog, G-protein 99.5 2.8E-13 9.5E-18 120.9 17.1 275 63-367 6-331 (338)
66 2ond_A Cleavage stimulation fa 99.5 1.2E-11 4.3E-16 108.8 25.3 217 112-332 33-269 (308)
67 2ond_A Cleavage stimulation fa 99.5 3.6E-11 1.2E-15 105.9 26.9 217 147-368 33-270 (308)
68 3vtx_A MAMA; tetratricopeptide 99.5 6.1E-12 2.1E-16 101.7 20.1 171 164-339 4-174 (184)
69 4abn_A Tetratricopeptide repea 99.5 2E-12 6.9E-17 120.9 19.2 212 110-327 83-315 (474)
70 3nf1_A KLC 1, kinesin light ch 99.4 5.8E-13 2E-17 117.5 12.6 135 94-228 26-181 (311)
71 4abn_A Tetratricopeptide repea 99.4 2.3E-12 7.8E-17 120.5 16.7 214 78-295 84-318 (474)
72 3q15_A PSP28, response regulat 99.4 6.8E-11 2.3E-15 107.4 25.7 229 171-409 107-364 (378)
73 3nf1_A KLC 1, kinesin light ch 99.4 5.5E-13 1.9E-17 117.7 11.2 239 129-368 26-307 (311)
74 3vtx_A MAMA; tetratricopeptide 99.4 2.8E-11 9.6E-16 97.7 20.3 167 199-368 4-170 (184)
75 4e6h_A MRNA 3'-END-processing 99.4 7E-10 2.4E-14 106.7 32.9 392 43-445 49-535 (679)
76 3q15_A PSP28, response regulat 99.4 5.9E-11 2E-15 107.9 21.7 313 25-370 9-367 (378)
77 1hz4_A MALT regulatory protein 99.4 2.2E-10 7.7E-15 103.8 24.5 277 100-409 19-321 (373)
78 3as5_A MAMA; tetratricopeptide 99.3 9.3E-11 3.2E-15 94.6 18.3 164 63-229 9-173 (186)
79 1hz4_A MALT regulatory protein 99.3 7.2E-10 2.5E-14 100.5 25.5 276 65-369 17-323 (373)
80 3as5_A MAMA; tetratricopeptide 99.3 2E-10 7E-15 92.5 18.0 163 167-367 10-172 (186)
81 3edt_B KLC 2, kinesin light ch 99.3 3.9E-11 1.3E-15 104.0 14.0 238 141-409 12-280 (283)
82 4gyw_A UDP-N-acetylglucosamine 99.2 5.9E-10 2E-14 108.6 20.7 167 201-371 10-177 (723)
83 4i17_A Hypothetical protein; T 99.2 5.8E-10 2E-14 93.4 18.2 194 129-332 6-208 (228)
84 3edt_B KLC 2, kinesin light ch 99.2 6.9E-11 2.4E-15 102.5 12.8 125 105-229 11-156 (283)
85 4i17_A Hypothetical protein; T 99.2 1.1E-09 3.6E-14 91.8 19.3 195 163-367 5-208 (228)
86 4gyw_A UDP-N-acetylglucosamine 99.2 3.8E-10 1.3E-14 109.9 18.3 165 165-332 9-173 (723)
87 1qqe_A Vesicular transport pro 99.2 8.8E-10 3E-14 96.1 18.7 189 175-365 47-266 (292)
88 3mv2_B Coatomer subunit epsilo 99.2 1.9E-08 6.7E-13 86.0 26.0 249 173-451 21-288 (310)
89 1qqe_A Vesicular transport pro 99.2 2.4E-09 8.1E-14 93.3 20.3 233 147-409 2-268 (292)
90 3mv2_B Coatomer subunit epsilo 99.2 5.1E-09 1.8E-13 89.5 20.8 143 114-261 85-237 (310)
91 2uy1_A Cleavage stimulation fa 99.1 1.6E-07 5.5E-12 87.7 27.6 201 218-442 197-412 (493)
92 2fo7_A Synthetic consensus TPR 99.1 5E-09 1.7E-13 79.2 14.6 129 97-228 3-131 (136)
93 3qky_A Outer membrane assembly 99.1 6.9E-09 2.4E-13 88.8 16.5 186 129-333 14-224 (261)
94 3qou_A Protein YBBN; thioredox 99.0 7.9E-09 2.7E-13 89.7 16.5 173 15-190 106-280 (287)
95 2fo7_A Synthetic consensus TPR 99.0 1.1E-08 3.6E-13 77.4 15.4 128 168-332 4-131 (136)
96 3qky_A Outer membrane assembly 99.0 1.6E-08 5.6E-13 86.4 18.3 185 163-367 13-223 (261)
97 2r5s_A Uncharacterized protein 99.0 6.9E-09 2.4E-13 82.8 13.8 160 65-227 9-171 (176)
98 3urz_A Uncharacterized protein 99.0 1.9E-08 6.6E-13 82.6 16.0 133 206-343 60-194 (208)
99 3urz_A Uncharacterized protein 99.0 2.6E-08 8.8E-13 81.9 16.6 136 239-386 58-195 (208)
100 2pzi_A Probable serine/threoni 99.0 7.5E-09 2.6E-13 101.2 15.1 172 37-215 402-583 (681)
101 2uy1_A Cleavage stimulation fa 99.0 1.1E-06 3.6E-11 82.2 28.9 358 26-409 15-412 (493)
102 3dra_A Protein farnesyltransfe 99.0 4.5E-07 1.5E-11 78.4 23.9 104 144-250 124-235 (306)
103 2r5s_A Uncharacterized protein 99.0 1.1E-08 3.8E-13 81.6 13.0 163 27-192 7-171 (176)
104 2pzi_A Probable serine/threoni 98.9 1.3E-08 4.6E-13 99.4 15.4 128 202-332 435-562 (681)
105 2yhc_A BAMD, UPF0169 lipoprote 98.9 1.5E-07 5.3E-12 78.3 19.9 56 310-367 153-212 (225)
106 4ga2_A E3 SUMO-protein ligase 98.9 5.3E-09 1.8E-13 80.9 10.1 122 70-193 5-128 (150)
107 2yhc_A BAMD, UPF0169 lipoprote 98.9 3.2E-08 1.1E-12 82.4 15.4 184 25-230 3-214 (225)
108 2ifu_A Gamma-SNAP; membrane fu 98.9 8.5E-08 2.9E-12 84.1 18.7 230 143-403 4-254 (307)
109 3dra_A Protein farnesyltransfe 98.9 6.8E-07 2.3E-11 77.2 23.6 222 107-332 45-286 (306)
110 3u3w_A Transcriptional activat 98.9 1E-06 3.5E-11 76.6 24.8 165 242-409 82-265 (293)
111 2ifu_A Gamma-SNAP; membrane fu 98.9 4.4E-08 1.5E-12 85.9 16.2 226 107-360 3-253 (307)
112 3qou_A Protein YBBN; thioredox 98.9 5.5E-08 1.9E-12 84.3 16.3 166 162-330 114-281 (287)
113 3rjv_A Putative SEL1 repeat pr 98.9 2.4E-07 8.4E-12 76.2 18.9 176 148-335 4-199 (212)
114 4ga2_A E3 SUMO-protein ligase 98.9 1.2E-08 4.2E-13 78.8 10.1 56 136-192 37-92 (150)
115 3rjv_A Putative SEL1 repeat pr 98.8 1.2E-07 4.2E-12 78.0 15.8 177 44-231 4-199 (212)
116 2vsy_A XCC0866; transferase, g 98.8 8.1E-08 2.8E-12 92.2 16.5 151 109-263 3-156 (568)
117 2vsy_A XCC0866; transferase, g 98.8 7.2E-08 2.5E-12 92.6 15.9 153 39-195 2-158 (568)
118 3gw4_A Uncharacterized protein 98.8 7E-08 2.4E-12 78.8 13.7 160 247-409 4-175 (203)
119 3u3w_A Transcriptional activat 98.8 1E-06 3.5E-11 76.6 21.6 171 171-370 81-268 (293)
120 1hh8_A P67PHOX, NCF-2, neutrop 98.8 5.2E-07 1.8E-11 74.3 17.2 126 65-194 9-150 (213)
121 2qfc_A PLCR protein; TPR, HTH, 98.8 1.3E-06 4.3E-11 76.0 20.4 126 243-368 123-266 (293)
122 2qfc_A PLCR protein; TPR, HTH, 98.7 9.2E-06 3.1E-10 70.5 24.4 133 273-408 119-264 (293)
123 1hh8_A P67PHOX, NCF-2, neutrop 98.7 7.7E-07 2.6E-11 73.2 16.6 123 171-298 12-150 (213)
124 3q7a_A Farnesyltransferase alp 98.7 4.9E-06 1.7E-10 72.7 21.6 166 80-249 72-256 (349)
125 3gyz_A Chaperone protein IPGC; 98.7 2.4E-07 8.3E-12 71.2 11.3 112 85-200 25-137 (151)
126 4f3v_A ESX-1 secretion system 98.6 6E-07 2E-11 75.8 13.7 139 272-422 105-247 (282)
127 3q7a_A Farnesyltransferase alp 98.6 6.4E-05 2.2E-09 65.7 26.8 203 216-424 105-345 (349)
128 2c2l_A CHIP, carboxy terminus 98.6 1.8E-07 6.3E-12 80.7 10.5 98 94-193 3-100 (281)
129 3gw4_A Uncharacterized protein 98.6 1.6E-06 5.4E-11 70.6 15.7 163 176-368 3-176 (203)
130 1p5q_A FKBP52, FK506-binding p 98.6 1.5E-07 5.1E-12 83.6 9.8 151 75-227 126-292 (336)
131 2c2l_A CHIP, carboxy terminus 98.6 4.9E-07 1.7E-11 78.0 12.5 193 200-409 4-198 (281)
132 1a17_A Serine/threonine protei 98.6 1.7E-06 5.8E-11 67.8 14.5 95 272-368 50-146 (166)
133 1a17_A Serine/threonine protei 98.6 1.9E-06 6.4E-11 67.5 14.8 131 271-409 15-145 (166)
134 1na0_A Designed protein CTPR3; 98.6 1.4E-06 4.8E-11 64.4 12.7 98 95-194 9-106 (125)
135 4f3v_A ESX-1 secretion system 98.6 3.2E-06 1.1E-10 71.4 16.0 188 38-230 18-238 (282)
136 2e2e_A Formate-dependent nitri 98.5 2.8E-07 9.4E-12 73.5 9.0 119 74-194 22-144 (177)
137 4gco_A Protein STI-1; structur 98.5 1.4E-06 4.6E-11 64.8 11.7 62 270-332 48-109 (126)
138 2vgx_A Chaperone SYCD; alterna 98.5 3.7E-07 1.3E-11 70.2 8.7 109 84-194 9-118 (148)
139 2e2e_A Formate-dependent nitri 98.5 7.3E-07 2.5E-11 71.0 10.7 120 176-332 21-143 (177)
140 1na0_A Designed protein CTPR3; 98.5 3E-06 1E-10 62.6 13.4 25 307-331 80-104 (125)
141 2fbn_A 70 kDa peptidylprolyl i 98.5 2.9E-07 1E-11 74.9 8.4 151 67-220 9-176 (198)
142 3gyz_A Chaperone protein IPGC; 98.5 1.1E-06 3.9E-11 67.4 10.9 92 240-332 41-132 (151)
143 2lni_A Stress-induced-phosphop 98.5 2.9E-06 9.9E-11 63.5 13.2 22 275-296 90-111 (133)
144 2vyi_A SGTA protein; chaperone 98.5 3E-06 1E-10 63.1 13.2 24 273-296 84-107 (131)
145 4gco_A Protein STI-1; structur 98.5 2.6E-06 9E-11 63.3 12.6 94 203-297 16-109 (126)
146 2vyi_A SGTA protein; chaperone 98.5 2.1E-06 7.3E-11 63.9 12.2 119 94-215 11-129 (131)
147 2lni_A Stress-induced-phosphop 98.5 3.1E-06 1E-10 63.4 12.6 99 129-229 15-113 (133)
148 2vgx_A Chaperone SYCD; alterna 98.5 1.5E-06 5.3E-11 66.7 10.9 106 260-367 12-117 (148)
149 4b4t_Q 26S proteasome regulato 98.5 2.3E-05 8E-10 72.2 20.6 194 138-331 12-243 (434)
150 1p5q_A FKBP52, FK506-binding p 98.4 3.9E-06 1.3E-10 74.4 14.2 93 272-367 199-293 (336)
151 3ro3_A PINS homolog, G-protein 98.4 3.5E-06 1.2E-10 65.6 12.1 136 271-409 11-157 (164)
152 4gcn_A Protein STI-1; structur 98.4 9.4E-06 3.2E-10 60.3 13.7 111 305-421 9-121 (127)
153 4b4t_Q 26S proteasome regulato 98.4 1.3E-05 4.5E-10 73.9 17.4 134 273-409 99-244 (434)
154 2xcb_A PCRH, regulatory protei 98.4 2E-06 6.9E-11 65.5 9.8 109 84-194 6-115 (142)
155 3upv_A Heat shock protein STI1 98.4 6.1E-06 2.1E-10 61.3 11.5 97 95-193 4-100 (126)
156 2fbn_A 70 kDa peptidylprolyl i 98.3 9.5E-07 3.2E-11 71.8 7.1 88 243-331 96-184 (198)
157 3upv_A Heat shock protein STI1 98.3 7.3E-06 2.5E-10 60.8 11.5 62 270-332 39-100 (126)
158 4gcn_A Protein STI-1; structur 98.3 8.7E-06 3E-10 60.5 11.7 98 242-341 15-118 (127)
159 3dss_A Geranylgeranyl transfer 98.3 0.00086 2.9E-08 58.3 25.1 195 217-426 91-319 (331)
160 1elw_A TPR1-domain of HOP; HOP 98.3 2.3E-05 7.7E-10 57.0 13.3 26 306-331 74-99 (118)
161 1elw_A TPR1-domain of HOP; HOP 98.3 2.8E-05 9.6E-10 56.5 13.5 57 170-227 9-65 (118)
162 1elr_A TPR2A-domain of HOP; HO 98.3 4.4E-06 1.5E-10 62.2 9.1 98 96-194 5-108 (131)
163 3dss_A Geranylgeranyl transfer 98.3 0.00028 9.6E-09 61.3 21.4 132 38-174 41-188 (331)
164 2kck_A TPR repeat; tetratricop 98.3 1.2E-05 4E-10 57.9 11.1 62 166-228 7-68 (112)
165 1elr_A TPR2A-domain of HOP; HO 98.3 9E-06 3.1E-10 60.5 10.7 98 245-344 14-117 (131)
166 3sz7_A HSC70 cochaperone (SGT) 98.3 2.2E-05 7.7E-10 61.3 13.4 97 269-367 11-107 (164)
167 3q49_B STIP1 homology and U bo 98.3 4.1E-05 1.4E-09 57.5 14.5 102 267-370 7-108 (137)
168 2xcb_A PCRH, regulatory protei 98.2 1.7E-05 5.8E-10 60.3 12.1 91 206-297 24-114 (142)
169 2kck_A TPR repeat; tetratricop 98.2 9.8E-06 3.4E-10 58.3 10.3 90 274-365 11-103 (112)
170 2dba_A Smooth muscle cell asso 98.2 4.1E-05 1.4E-09 58.3 14.4 96 165-263 28-127 (148)
171 2dba_A Smooth muscle cell asso 98.2 3E-05 1E-09 59.1 12.8 111 24-138 26-141 (148)
172 3q49_B STIP1 homology and U bo 98.2 2.9E-05 1E-09 58.4 12.0 95 202-297 11-105 (137)
173 3sz7_A HSC70 cochaperone (SGT) 98.2 4E-05 1.4E-09 59.9 13.0 95 202-297 13-107 (164)
174 1kt0_A FKBP51, 51 kDa FK506-bi 98.2 5E-06 1.7E-10 77.1 8.8 143 76-220 248-405 (457)
175 3n71_A Histone lysine methyltr 98.1 1.9E-05 6.4E-10 73.2 12.3 134 277-410 317-464 (490)
176 1hxi_A PEX5, peroxisome target 98.1 1.3E-05 4.3E-10 59.0 9.0 96 27-124 18-114 (121)
177 1wao_1 Serine/threonine protei 98.1 1.3E-05 4.5E-10 74.6 10.7 118 209-328 15-134 (477)
178 1hxi_A PEX5, peroxisome target 98.1 1.8E-05 6.2E-10 58.2 9.4 86 277-365 25-111 (121)
179 3k9i_A BH0479 protein; putativ 98.1 1.1E-05 3.7E-10 59.0 7.9 84 282-366 3-88 (117)
180 3ro3_A PINS homolog, G-protein 98.1 3.4E-05 1.2E-09 59.7 10.8 63 306-368 91-158 (164)
181 2xev_A YBGF; tetratricopeptide 98.0 9E-05 3.1E-09 54.9 12.2 61 271-332 41-104 (129)
182 2hr2_A Hypothetical protein; a 98.0 0.0003 1E-08 53.5 14.3 110 272-383 14-144 (159)
183 1wao_1 Serine/threonine protei 98.0 5.7E-05 2E-09 70.3 12.2 123 275-405 12-134 (477)
184 2xev_A YBGF; tetratricopeptide 98.0 0.00013 4.4E-09 54.0 12.1 26 203-228 42-67 (129)
185 3k9i_A BH0479 protein; putativ 98.0 4E-05 1.4E-09 55.9 8.6 86 143-229 3-90 (117)
186 2hr2_A Hypothetical protein; a 97.9 0.00023 7.8E-09 54.2 12.6 100 306-409 13-130 (159)
187 3rkv_A Putative peptidylprolyl 97.9 8.2E-05 2.8E-09 57.9 10.7 114 200-339 11-130 (162)
188 1kt0_A FKBP51, 51 kDa FK506-bi 97.9 0.00011 3.9E-09 68.0 13.2 143 200-365 268-412 (457)
189 3rkv_A Putative peptidylprolyl 97.9 0.0001 3.4E-09 57.4 10.1 30 95-124 11-40 (162)
190 1ihg_A Cyclophilin 40; ppiase 97.9 0.00014 4.8E-09 65.2 12.1 138 96-255 224-361 (370)
191 1ihg_A Cyclophilin 40; ppiase 97.8 0.00015 5.3E-09 64.9 11.7 137 202-360 225-362 (370)
192 2if4_A ATFKBP42; FKBP-like, al 97.8 8E-05 2.7E-09 65.9 9.7 146 167-332 181-327 (338)
193 2if4_A ATFKBP42; FKBP-like, al 97.8 2.7E-05 9.3E-10 69.0 6.2 130 95-229 179-328 (338)
194 3n71_A Histone lysine methyltr 97.8 0.00019 6.5E-09 66.5 12.0 132 312-443 317-464 (490)
195 1dce_A Protein (RAB geranylger 97.8 0.0011 3.7E-08 63.0 16.8 139 111-253 89-244 (567)
196 1klx_A Cysteine rich protein B 97.7 0.0013 4.6E-08 49.3 13.1 113 108-231 8-128 (138)
197 1dce_A Protein (RAB geranylger 97.7 0.0022 7.6E-08 60.9 17.5 139 181-322 89-244 (567)
198 2kat_A Uncharacterized protein 97.6 0.00065 2.2E-08 49.1 10.3 81 147-229 2-82 (115)
199 2l6j_A TPR repeat-containing p 97.6 8.8E-05 3E-09 53.2 5.6 91 270-363 5-102 (111)
200 1zu2_A Mitochondrial import re 97.6 0.00031 1.1E-08 53.3 7.9 114 36-159 12-147 (158)
201 2kat_A Uncharacterized protein 97.5 0.00088 3E-08 48.3 9.6 62 269-331 19-80 (115)
202 1klx_A Cysteine rich protein B 97.5 0.0047 1.6E-07 46.3 13.6 85 275-365 31-123 (138)
203 2l6j_A TPR repeat-containing p 97.4 0.00059 2E-08 48.7 7.8 64 165-229 4-67 (111)
204 1zu2_A Mitochondrial import re 97.4 0.00041 1.4E-08 52.6 6.8 109 211-347 13-132 (158)
205 3qww_A SET and MYND domain-con 97.4 0.00083 2.8E-08 61.2 9.7 93 316-409 310-410 (433)
206 3qwp_A SET and MYND domain-con 97.3 0.0013 4.3E-08 60.0 10.4 99 310-409 293-399 (429)
207 1na3_A Designed protein CTPR2; 97.3 0.0019 6.5E-08 43.9 9.0 63 166-229 10-72 (91)
208 3ly7_A Transcriptional activat 97.3 0.011 3.7E-07 51.8 15.3 72 128-203 275-346 (372)
209 1na3_A Designed protein CTPR2; 97.3 0.0018 6E-08 44.1 8.7 60 272-332 12-71 (91)
210 3ma5_A Tetratricopeptide repea 97.2 0.0014 4.7E-08 45.9 7.8 63 303-366 6-68 (100)
211 3ly7_A Transcriptional activat 97.2 0.012 4.1E-07 51.5 14.5 142 197-343 191-347 (372)
212 3qwp_A SET and MYND domain-con 97.1 0.0044 1.5E-07 56.5 12.0 96 276-371 294-403 (429)
213 3ma5_A Tetratricopeptide repea 97.0 0.0028 9.5E-08 44.3 7.8 25 306-330 43-67 (100)
214 1wy6_A Hypothetical protein ST 97.0 0.033 1.1E-06 40.2 12.6 66 340-413 92-157 (172)
215 3qww_A SET and MYND domain-con 96.9 0.0045 1.5E-07 56.3 10.1 90 281-370 310-413 (433)
216 3lvg_A Clathrin heavy chain 1; 96.6 0.00011 3.8E-09 65.5 -2.6 245 61-324 53-324 (624)
217 3mkq_A Coatomer beta'-subunit; 96.6 0.087 3E-06 52.7 17.3 154 174-365 608-762 (814)
218 3mkq_A Coatomer beta'-subunit; 96.5 0.053 1.8E-06 54.2 15.2 27 130-156 681-707 (814)
219 3u64_A Protein TP_0956; tetrat 96.3 0.24 8.4E-06 41.5 15.5 124 76-201 135-278 (301)
220 2kc7_A BFR218_protein; tetratr 96.3 0.017 5.8E-07 39.9 7.6 58 275-333 6-64 (99)
221 2v5f_A Prolyl 4-hydroxylase su 96.1 0.069 2.4E-06 37.4 9.9 77 338-417 4-80 (104)
222 3mkq_B Coatomer subunit alpha; 96.0 0.37 1.3E-05 37.1 14.4 48 173-226 13-60 (177)
223 3bee_A Putative YFRE protein; 95.9 0.047 1.6E-06 37.3 7.8 48 146-194 25-72 (93)
224 3mkq_B Coatomer subunit alpha; 95.8 0.36 1.2E-05 37.1 13.2 99 210-328 15-113 (177)
225 2kc7_A BFR218_protein; tetratr 95.7 0.078 2.7E-06 36.4 8.8 52 246-297 11-63 (99)
226 1wy6_A Hypothetical protein ST 95.7 0.39 1.3E-05 34.8 17.1 60 305-365 92-151 (172)
227 1pc2_A Mitochondria fission pr 95.7 0.089 3E-06 39.4 9.0 81 255-338 18-103 (152)
228 3bee_A Putative YFRE protein; 95.6 0.11 3.9E-06 35.3 9.0 28 305-332 44-71 (93)
229 4ady_A RPN2, 26S proteasome re 95.6 2.1 7.1E-05 42.7 23.1 255 72-332 384-657 (963)
230 2v5f_A Prolyl 4-hydroxylase su 95.2 0.18 6E-06 35.2 9.1 66 272-339 8-79 (104)
231 1pc2_A Mitochondria fission pr 95.2 0.12 4.2E-06 38.7 8.3 78 149-228 17-99 (152)
232 3lvg_A Clathrin heavy chain 1; 95.1 1.6E-05 5.4E-10 70.9 -14.8 264 94-406 53-316 (624)
233 4h7y_A Dual specificity protei 94.9 0.46 1.6E-05 35.2 10.5 64 282-347 73-136 (161)
234 3u64_A Protein TP_0956; tetrat 94.8 0.13 4.6E-06 43.1 8.4 94 78-171 179-283 (301)
235 4ady_A RPN2, 26S proteasome re 94.3 4.9 0.00017 40.1 30.6 172 245-430 500-675 (963)
236 4h7y_A Dual specificity protei 94.1 1.3 4.4E-05 32.9 11.2 112 23-137 10-135 (161)
237 1nzn_A CGI-135 protein, fissio 93.5 0.54 1.8E-05 33.8 8.3 60 273-332 39-102 (126)
238 1nzn_A CGI-135 protein, fissio 92.7 1.5 5E-05 31.6 9.6 89 277-367 9-102 (126)
239 1qsa_A Protein (soluble lytic 92.6 7.3 0.00025 37.1 24.5 271 77-365 54-345 (618)
240 3ffl_A Anaphase-promoting comp 92.6 0.4 1.4E-05 36.3 6.8 70 342-411 66-152 (167)
241 4fhn_B Nucleoporin NUP120; pro 91.7 14 0.00049 38.4 19.8 86 131-218 900-989 (1139)
242 1v54_E Cytochrome C oxidase po 91.5 0.77 2.6E-05 31.2 6.4 46 183-228 28-73 (109)
243 4b4t_P 26S proteasome regulato 91.3 8.5 0.00029 35.0 20.2 100 307-409 140-246 (445)
244 4gns_B Protein CSD3, chitin bi 91.1 1.4 4.9E-05 42.8 10.5 128 97-226 250-397 (754)
245 4gns_B Protein CSD3, chitin bi 90.4 1.1 3.9E-05 43.5 9.2 125 170-296 253-398 (754)
246 4b4t_P 26S proteasome regulato 89.9 11 0.00038 34.3 23.5 153 273-430 141-307 (445)
247 2ff4_A Probable regulatory pro 89.7 1 3.6E-05 40.2 7.9 66 136-202 177-247 (388)
248 2ff4_A Probable regulatory pro 89.4 2.1 7.1E-05 38.3 9.6 74 307-383 174-247 (388)
249 4fhn_B Nucleoporin NUP120; pro 89.1 24 0.00081 36.8 20.9 81 168-250 902-986 (1139)
250 3ffl_A Anaphase-promoting comp 88.6 3 0.0001 31.6 8.4 63 26-88 20-89 (167)
251 1v54_E Cytochrome C oxidase po 87.9 4.8 0.00016 27.4 9.7 64 354-425 25-88 (109)
252 2wpv_A GET4, UPF0363 protein Y 87.4 13 0.00044 31.8 17.2 117 272-404 36-157 (312)
253 1wdy_A 2-5A-dependent ribonucl 86.8 10 0.00035 31.5 12.2 52 32-88 8-62 (285)
254 3txn_A 26S proteasome regulato 86.2 18 0.00061 32.2 19.1 26 167-192 21-46 (394)
255 4b4t_R RPN7, 26S proteasome re 85.6 9.7 0.00033 34.5 11.9 59 272-330 134-194 (429)
256 3eiq_C Programmed cell death p 85.3 12 0.0004 32.8 11.5 68 272-340 220-289 (358)
257 2y69_E Cytochrome C oxidase su 84.5 9.6 0.00033 27.6 9.7 64 354-425 68-131 (152)
258 2y69_E Cytochrome C oxidase su 83.9 10 0.00035 27.4 9.4 58 184-242 72-129 (152)
259 2wpv_A GET4, UPF0363 protein Y 82.6 22 0.00075 30.3 20.6 148 33-213 20-178 (312)
260 3o48_A Mitochondria fission 1 81.0 13 0.00045 26.9 8.3 52 285-338 59-110 (134)
261 1wdy_A 2-5A-dependent ribonucl 80.3 11 0.00037 31.4 9.6 47 317-363 192-240 (285)
262 3o48_A Mitochondria fission 1 79.1 16 0.00054 26.5 9.8 68 299-366 35-105 (134)
263 3lpz_A GET4 (YOR164C homolog); 78.9 31 0.0011 29.7 23.2 132 67-215 40-182 (336)
264 2uwj_G Type III export protein 78.8 13 0.00044 25.2 11.6 88 38-135 18-107 (115)
265 3lpz_A GET4 (YOR164C homolog); 78.8 31 0.0011 29.7 20.2 117 272-404 38-159 (336)
266 1zbp_A Hypothetical protein VP 78.4 5.1 0.00017 33.1 6.3 53 140-193 7-59 (273)
267 2p58_C Putative type III secre 78.2 13 0.00046 25.2 11.5 87 38-134 19-107 (116)
268 4b4t_R RPN7, 26S proteasome re 77.5 31 0.0011 31.1 12.0 60 202-261 133-194 (429)
269 2qx5_A Nucleoporin NIC96; mRNA 77.0 45 0.0015 32.0 13.2 81 206-296 300-383 (661)
270 3kea_A K1L; tropism, ANK repea 76.0 18 0.00063 30.3 9.7 51 32-87 34-84 (285)
271 3kea_A K1L; tropism, ANK repea 75.0 36 0.0012 28.4 11.5 14 352-365 231-244 (285)
272 3hra_A Ankyrin repeat family p 74.6 6.1 0.00021 30.9 6.0 16 323-338 157-172 (201)
273 1y8m_A FIS1; mitochondria, unk 74.5 23 0.00078 26.0 9.5 20 139-158 86-105 (144)
274 1n11_A Ankyrin; clathrin, BAND 72.8 29 0.001 31.1 10.9 203 32-259 17-233 (437)
275 2uwj_G Type III export protein 70.9 21 0.0007 24.3 6.5 84 251-342 22-105 (115)
276 2p58_C Putative type III secre 70.8 22 0.00075 24.2 7.6 84 251-342 23-106 (116)
277 2nsz_A Programmed cell death p 70.7 18 0.00061 26.1 7.0 63 66-128 11-76 (129)
278 3esl_A Checkpoint serine/threo 68.7 41 0.0014 26.4 9.6 53 355-414 95-148 (202)
279 1n11_A Ankyrin; clathrin, BAND 68.6 66 0.0022 28.8 13.2 190 11-220 27-229 (437)
280 1y8m_A FIS1; mitochondria, unk 68.1 33 0.0011 25.2 10.1 66 301-366 36-104 (144)
281 3eu9_A Huntingtin-interacting 67.2 21 0.00073 28.5 7.9 20 68-87 45-64 (240)
282 3esl_A Checkpoint serine/threo 67.0 44 0.0015 26.2 8.9 56 109-164 93-149 (202)
283 2ion_A PDCD4, programmed cell 66.6 23 0.00079 26.4 7.0 62 66-127 13-77 (152)
284 3eiq_C Programmed cell death p 66.3 67 0.0023 28.0 13.7 64 238-301 220-285 (358)
285 1qsa_A Protein (soluble lytic 65.7 95 0.0033 29.6 32.9 116 179-297 228-347 (618)
286 4g8k_A 2-5A-dependent ribonucl 63.8 69 0.0024 27.3 14.6 53 31-88 27-82 (337)
287 3txn_A 26S proteasome regulato 63.3 81 0.0028 28.0 23.0 167 25-191 18-207 (394)
288 1zbp_A Hypothetical protein VP 62.2 67 0.0023 26.6 13.1 119 277-410 5-129 (273)
289 3eu9_A Huntingtin-interacting 62.2 26 0.00088 28.0 7.5 9 106-114 17-25 (240)
290 4a1g_A Mitotic checkpoint seri 60.9 49 0.0017 24.6 9.4 53 113-165 83-136 (152)
291 2wvi_A Mitotic checkpoint seri 60.7 37 0.0012 25.7 7.1 54 113-166 78-132 (164)
292 1k1a_A B-cell lymphoma 3-encod 59.9 58 0.002 25.9 9.3 28 172-199 13-40 (241)
293 3hra_A Ankyrin repeat family p 59.3 24 0.00084 27.3 6.6 16 73-88 13-28 (201)
294 2zu6_B Programmed cell death p 58.0 87 0.003 26.6 11.4 25 66-90 7-31 (307)
295 1k1a_A B-cell lymphoma 3-encod 57.2 56 0.0019 26.0 8.7 56 32-88 12-69 (241)
296 3jxi_A Vanilloid receptor-rela 57.1 17 0.0006 29.7 5.6 26 104-129 11-36 (260)
297 4g8k_A 2-5A-dependent ribonucl 56.8 92 0.0032 26.5 11.1 59 66-129 26-86 (337)
298 3t8k_A Uncharacterized protein 56.2 66 0.0023 24.7 8.6 55 73-129 14-69 (186)
299 4b4t_S RPN3, 26S proteasome re 56.0 85 0.0029 29.0 10.0 184 130-335 231-431 (523)
300 2d2s_A Exocyst complex compone 55.8 62 0.0021 26.2 8.3 94 29-123 21-119 (235)
301 2fe3_A Peroxide operon regulat 54.0 62 0.0021 23.7 7.9 63 293-356 11-73 (145)
302 2xig_A Ferric uptake regulatio 52.9 60 0.0021 24.0 7.3 63 293-356 16-78 (150)
303 2keb_A DNA polymerase subunit 51.8 52 0.0018 22.1 7.2 60 397-456 25-89 (101)
304 3b7b_A Euchromatic histone-lys 51.8 50 0.0017 26.3 7.5 177 68-262 47-234 (237)
305 1mzb_A Ferric uptake regulatio 51.6 60 0.002 23.5 7.0 61 295-356 9-70 (136)
306 3eyy_A Putative iron uptake re 51.3 55 0.0019 24.0 6.8 62 293-356 8-69 (145)
307 3aji_A 26S proteasome non-ATPa 50.7 77 0.0026 25.0 8.5 20 69-88 10-29 (231)
308 3bu8_A Telomeric repeat-bindin 50.6 53 0.0018 26.0 6.6 20 71-90 123-142 (235)
309 3bu8_A Telomeric repeat-bindin 50.5 92 0.0032 24.7 8.8 22 311-332 121-142 (235)
310 4ets_A Ferric uptake regulatio 50.3 57 0.0019 24.6 6.9 71 286-357 14-87 (162)
311 3jxi_A Vanilloid receptor-rela 49.6 24 0.00083 28.8 5.3 54 33-87 9-71 (260)
312 3pvs_A Replication-associated 49.2 1.5E+02 0.0052 26.8 11.7 21 179-199 269-289 (447)
313 3d5l_A Regulatory protein RECX 48.3 85 0.0029 25.1 8.0 51 356-414 93-143 (221)
314 4a1g_A Mitotic checkpoint seri 48.1 83 0.0028 23.4 9.3 50 358-414 84-134 (152)
315 2w57_A Ferric uptake regulatio 47.8 65 0.0022 23.8 6.8 63 294-357 7-70 (150)
316 3aji_A 26S proteasome non-ATPa 46.7 57 0.0019 25.8 7.0 19 207-225 10-28 (231)
317 2d2s_A Exocyst complex compone 45.5 1.2E+02 0.0041 24.5 9.5 25 272-296 94-118 (235)
318 3b7b_A Euchromatic histone-lys 42.9 88 0.003 24.8 7.7 209 68-297 14-235 (237)
319 2rfa_A Transient receptor pote 41.7 1.3E+02 0.0043 23.7 10.1 24 208-231 159-182 (232)
320 2rfa_A Transient receptor pote 41.7 89 0.0031 24.7 7.5 28 387-414 157-184 (232)
321 2pnn_A Transient receptor pote 41.1 1.1E+02 0.0038 25.0 8.2 19 141-159 21-39 (273)
322 3pvs_A Replication-associated 41.0 2.1E+02 0.007 25.9 13.0 30 107-136 267-296 (447)
323 2etb_A Transient receptor pote 40.7 1.2E+02 0.004 24.4 8.2 23 105-127 9-31 (256)
324 2b7e_A PRE-mRNA processing pro 40.3 34 0.0012 20.5 3.3 29 286-314 3-31 (59)
325 3eyy_A Putative iron uptake re 40.3 1.1E+02 0.0036 22.5 6.9 34 181-214 33-66 (145)
326 3ltm_A Alpha-REP4; protein eng 40.2 1.3E+02 0.0044 23.3 20.8 154 163-332 31-184 (211)
327 4ets_A Ferric uptake regulatio 40.1 1.2E+02 0.004 22.8 7.9 57 373-430 25-83 (162)
328 2fe3_A Peroxide operon regulat 40.0 1.1E+02 0.0037 22.4 7.7 33 179-211 35-67 (145)
329 2wvi_A Mitotic checkpoint seri 40.0 1.2E+02 0.0041 22.9 9.0 31 384-414 99-129 (164)
330 4gq2_M Nucleoporin NUP120; bet 39.8 2E+02 0.0068 29.2 10.9 108 68-179 816-950 (950)
331 1mzb_A Ferric uptake regulatio 39.7 1E+02 0.0035 22.2 7.3 33 180-212 33-65 (136)
332 2o03_A Probable zinc uptake re 39.5 64 0.0022 23.1 5.5 49 308-356 14-62 (131)
333 2w57_A Ferric uptake regulatio 39.4 1.1E+02 0.0039 22.5 7.2 35 180-214 32-66 (150)
334 3ljn_A Hypothetical protein; a 38.3 1.4E+02 0.0047 25.8 8.6 18 70-87 25-42 (364)
335 3mwm_A ZUR, putative metal upt 36.7 58 0.002 23.7 4.9 50 307-356 16-65 (139)
336 2ion_A PDCD4, programmed cell 36.5 1.3E+02 0.0044 22.3 8.3 23 204-226 13-35 (152)
337 1bpo_A Protein (clathrin); cla 36.1 2.5E+02 0.0086 25.5 11.3 90 272-363 364-453 (494)
338 3l6a_A Eukaryotic translation 34.9 2.3E+02 0.0079 24.8 10.7 25 66-90 16-40 (364)
339 3ljn_A Hypothetical protein; a 34.8 95 0.0032 26.8 7.0 91 30-127 21-113 (364)
340 2r9g_A AAA ATPase, central reg 34.7 1.6E+02 0.0056 23.0 9.5 58 177-235 26-88 (204)
341 2r9g_A AAA ATPase, central reg 33.2 1.7E+02 0.006 22.8 10.6 44 309-353 16-62 (204)
342 1ug3_A EIF4GI, eukaryotic prot 33.0 2.4E+02 0.0081 24.3 10.0 23 384-406 144-166 (339)
343 3bge_A Predicted ATPase; struc 32.8 1.8E+02 0.006 22.8 7.9 38 177-214 19-56 (201)
344 2nsz_A Programmed cell death p 31.4 1.4E+02 0.0049 21.3 9.5 23 204-226 11-33 (129)
345 2keb_A DNA polymerase subunit 30.3 1.3E+02 0.0043 20.3 7.1 62 322-387 27-88 (101)
346 2fu4_A Ferric uptake regulatio 30.2 1.1E+02 0.0037 19.5 7.2 12 183-194 35-46 (83)
347 3mwm_A ZUR, putative metal upt 30.0 93 0.0032 22.6 5.1 41 172-212 20-60 (139)
348 2o03_A Probable zinc uptake re 30.0 1.2E+02 0.0039 21.7 5.6 45 386-430 15-59 (131)
349 2etb_A Transient receptor pote 29.7 70 0.0024 25.9 5.0 17 70-86 7-23 (256)
350 4fke_A Aminopeptidase N; zinc 29.5 4.5E+02 0.016 26.5 15.0 159 204-364 690-856 (909)
351 3twr_A Tankyrase-2; ankyrin re 29.2 1.2E+02 0.0041 22.2 5.9 19 69-87 12-30 (165)
352 4gq2_M Nucleoporin NUP120; bet 29.2 4.7E+02 0.016 26.5 12.9 51 310-365 816-866 (950)
353 1bpo_A Protein (clathrin); cla 28.2 3.1E+02 0.011 24.9 8.7 35 56-90 355-389 (494)
354 3ctd_A Putative ATPase, AAA fa 27.3 2.3E+02 0.0079 22.4 9.4 64 171-234 38-109 (213)
355 4b4t_O 26S proteasome regulato 27.2 3.3E+02 0.011 24.1 9.6 58 342-401 130-189 (393)
356 1bd8_A P19INK4D CDK4/6 inhibit 26.8 76 0.0026 23.0 4.3 17 35-51 8-24 (156)
357 2f6m_A Suppressor protein STP2 26.8 1.1E+02 0.0039 18.7 4.5 44 97-141 4-47 (65)
358 2dzn_A Probable 26S proteasome 26.3 1.3E+02 0.0043 23.6 5.9 15 73-87 10-24 (228)
359 1q02_A Sequestosome 1; helical 26.3 93 0.0032 18.0 3.3 38 10-49 10-47 (52)
360 1s6c_A KV4 potassium channel-i 25.9 2.1E+02 0.007 21.3 9.0 43 147-191 140-182 (183)
361 1oai_A Nuclear RNA export fact 25.5 53 0.0018 19.7 2.4 24 39-62 33-56 (59)
362 4fjo_A DNA repair protein REV1 25.0 89 0.0031 21.0 3.8 46 9-54 13-61 (97)
363 3bge_A Predicted ATPase; struc 24.7 2.5E+02 0.0086 21.9 8.9 44 310-353 10-56 (201)
364 2xig_A Ferric uptake regulatio 23.8 2.2E+02 0.0074 20.9 8.1 57 373-430 19-75 (150)
365 3ctd_A Putative ATPase, AAA fa 23.5 2.7E+02 0.0094 22.0 10.0 46 308-353 36-84 (213)
366 4aez_C MAD3, mitotic spindle c 23.4 2.9E+02 0.0098 22.1 8.6 84 320-414 100-183 (223)
367 2ko4_A Mediator of RNA polymer 22.7 94 0.0032 19.9 3.2 40 82-121 23-62 (81)
368 3utm_A Tankyrase-1; tankyrase, 22.7 3.4E+02 0.012 22.7 13.6 16 72-87 31-46 (351)
369 1wty_A Hypothetical protein TT 22.6 2E+02 0.0068 20.0 6.2 69 180-254 3-72 (119)
370 3ltj_A Alpharep-4; protein eng 22.5 2.6E+02 0.0088 21.3 22.2 92 302-409 88-179 (201)
371 3ygs_P Procaspase 9; apoptosis 22.3 1.4E+02 0.0049 19.9 4.5 34 284-321 52-85 (97)
372 3ltj_A Alpharep-4; protein eng 21.9 2.7E+02 0.0091 21.2 20.6 17 199-215 89-105 (201)
373 3e3v_A Regulatory protein RECX 21.7 2.1E+02 0.0071 21.8 5.9 55 396-450 48-103 (177)
374 3t8k_A Uncharacterized protein 21.7 2.2E+02 0.0075 21.6 6.2 24 392-415 46-69 (186)
375 3ygs_P Procaspase 9; apoptosis 21.4 1.3E+02 0.0044 20.1 4.1 36 77-114 52-87 (97)
376 3vu7_H DNA repair protein REV1 21.3 1.4E+02 0.0049 21.2 4.4 42 11-52 42-86 (124)
377 1ug3_A EIF4GI, eukaryotic prot 21.0 4E+02 0.014 22.9 14.7 62 66-127 15-78 (339)
378 2jul_A Calsenilin; EF-hand, ca 20.1 3.4E+02 0.012 21.8 7.6 145 10-156 93-255 (256)
No 1
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=3.8e-38 Score=306.43 Aligned_cols=408 Identities=9% Similarity=-0.035 Sum_probs=230.4
Q ss_pred ChhchHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCCchhHHHHHHHHHhhcChHHHHHHhhhcCCCCCchhHHHHHHHH
Q 044770 25 HRGEIFHSINRLRKLQLNKRALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQGEKLFCCIPKDYQNELLYNNLVIA 104 (464)
Q Consensus 25 ~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~li~~ 104 (464)
+...+..++..+.+.|++++|+.+|+.+... .|+..++..++..|.+.|++++|..+|+.+....++..+++.++.+
T Consensus 83 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~---~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~ 159 (597)
T 2xpi_A 83 REDYLRLWRHDALMQQQYKCAAFVGEKVLDI---TGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLYNRSSACRYLAAFC 159 (597)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---HCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGGGTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccCchHHHHHHHHHHhh---CCCchHHHHHHHHHHHcCcHHHHHHHHHHHhccccchhHHHHHHHH
Confidence 3344455555555555555555555555431 2344455555555555555555555555554333444555555555
Q ss_pred HHhhCcHHHHHHHHHHHHHc---------------CCCCchhhHHHHHHHhcCCCCcccHHHHHHHHHhCC---------
Q 044770 105 CLDKGVIKLSLEYMKKMRVL---------------GHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADK--------- 160 (464)
Q Consensus 105 ~~~~~~~~~a~~~~~~m~~~---------------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--------- 160 (464)
|.+.|++++|+++|+++... +.+++..+|+.++.+|.+.|++++|.++|++|.+.+
T Consensus 160 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 239 (597)
T 2xpi_A 160 LVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQ 239 (597)
T ss_dssp HHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCchhhHHHHH
Confidence 55555555555555422111 112234455555555555555555555555544322
Q ss_pred -------------------------------------------------------------CCCChhhHHHHHHHHHccC
Q 044770 161 -------------------------------------------------------------VAPHVSTFHILMKIEANDH 179 (464)
Q Consensus 161 -------------------------------------------------------------~~~~~~~~~~l~~~~~~~~ 179 (464)
.+++..+|+.++.+|.+.|
T Consensus 240 l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g 319 (597)
T 2xpi_A 240 LVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRS 319 (597)
T ss_dssp HHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHHHTT
T ss_pred HHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhc
Confidence 0355556666666666666
Q ss_pred ChhHHHHHHHHHHhCCCCCcHhHHHHHHHHHHhcChhhHHHHHHHHHHhccCCCChhhHHHHHHHHHhhcChhhHHHHHH
Q 044770 180 NIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWA 259 (464)
Q Consensus 180 ~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 259 (464)
++++|.++|+++.+.+ +.+..+|..++.++.+.|++++|..+++++.+. .+.+..++..++.+|.+.|++++|.++|+
T Consensus 320 ~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 397 (597)
T 2xpi_A 320 RFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDR-HPEKAVTWLAVGIYYLCVNKISEARRYFS 397 (597)
T ss_dssp CHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHH-CTTSHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhh-CcccHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 6666666666665543 224555666666666666666666666666543 33455566666666666666666666666
Q ss_pred HhccCCCCchhhHHHHHHHhhccCChHHHHHHHHHHHhccccCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCccH
Q 044770 260 TVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNA 339 (464)
Q Consensus 260 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~ 339 (464)
.+....+.+..+|+.++.+|.+.|++++|.++|+++.+. .+.+..+|+.++.+|.+.|++++|.++|+++.+.. +.+.
T Consensus 398 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~ 475 (597)
T 2xpi_A 398 KSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARL-FQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALF-QYDP 475 (597)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT-TTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CCCH
T ss_pred HHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCh
Confidence 665544455556666666666666666666666666653 23355666666666666666666666666666542 2245
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHhHHHHhhhhhcCCCCc--HHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCcHH
Q 044770 340 ITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPW--LETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTF 417 (464)
Q Consensus 340 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~ 417 (464)
.+|..++..|.+.|++++|.++|+.+++... ..+..|+ ..+|..++.+|.+.|++++|.++|+++.+.+ +.+..
T Consensus 476 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~ 551 (597)
T 2xpi_A 476 LLLNELGVVAFNKSDMQTAINHFQNALLLVK---KTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS-TNDAN 551 (597)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH---HSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SCCHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHhhh---ccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChH
Confidence 6666666666666666666666666643321 1244555 5566666666666666666666666666554 22455
Q ss_pred HHHHHHHHHHHcCCC--hhHHHHHHHhC
Q 044770 418 VYNTLIKAYVKAKIN--DPNLLRRMILG 443 (464)
Q Consensus 418 ~~~~li~~~~~~g~~--a~~~~~~m~~~ 443 (464)
+|..+..+|.+.|+. |.+.|+++.+.
T Consensus 552 ~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 579 (597)
T 2xpi_A 552 VHTAIALVYLHKKIPGLAITHLHESLAI 579 (597)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence 666666666666653 66666666653
No 2
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.4e-37 Score=302.46 Aligned_cols=400 Identities=9% Similarity=-0.047 Sum_probs=327.7
Q ss_pred CcchhhHHHHhhcCccChhchHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCCchhHHHHHHHHHhhcChHHHHHHhhhc
Q 044770 9 PVGSAFQSWMREGFPVHRGEIFHSINRLRKLQLNKRALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQGEKLFCCI 88 (464)
Q Consensus 9 ~~~~~l~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 88 (464)
.+..+++.+. +..|+..++..++..+.+.|++++|+.+|+.+.. .+++..+++.++.+|.+.|++++|.++|+++
T Consensus 102 ~A~~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 176 (597)
T 2xpi_A 102 CAAFVGEKVL--DITGNPNDAFWLAQVYCCTGDYARAKCLLTKEDL---YNRSSACRYLAAFCLVKLYDWQGALNLLGET 176 (597)
T ss_dssp HHHHHHHHHH--HHHCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCG---GGTCHHHHHHHHHHHHHTTCHHHHHHHHCSS
T ss_pred HHHHHHHHHH--hhCCCchHHHHHHHHHHHcCcHHHHHHHHHHHhc---cccchhHHHHHHHHHHHHhhHHHHHHHHhcc
Confidence 3455666665 3456778889999999999999999999998865 3678899999999999999999999999964
Q ss_pred CCC-----------------CCchhHHHHHHHHHHhhCcHHHHHHHHHHHHHcCC-------------------------
Q 044770 89 PKD-----------------YQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGH------------------------- 126 (464)
Q Consensus 89 ~~~-----------------~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~------------------------- 126 (464)
... ..+..+|+.++.+|.+.|++++|+++|++|.+.+.
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~ 256 (597)
T 2xpi_A 177 NPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVL 256 (597)
T ss_dssp CTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCSCHHHHHHHHH
T ss_pred CCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCchhhHHHHHHHHhhcccchhHHHHHH
Confidence 332 12578999999999999999999999999876432
Q ss_pred ---------------------------------------------CCchhhHHHHHHHhcCCCCcccHHHHHHHHHhCCC
Q 044770 127 ---------------------------------------------SISYLVFNRLIILNSSPGRRKTIPNILRQMKADKV 161 (464)
Q Consensus 127 ---------------------------------------------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 161 (464)
+++..+++.++..|.+.|++++|.++|+++.+.+
T Consensus 257 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~- 335 (597)
T 2xpi_A 257 KLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEID- 335 (597)
T ss_dssp HSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred hcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC-
Confidence 2567788899999999999999999999999866
Q ss_pred CCChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCcHhHHHHHHHHHHhcChhhHHHHHHHHHHhccCCCChhhHHHH
Q 044770 162 APHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVL 241 (464)
Q Consensus 162 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 241 (464)
+.+..+++.++.++.+.|++++|..+++++.+.. +.+..+|+.++..|.+.|++++|.++|+++.+. .+.+..+++.+
T Consensus 336 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l 413 (597)
T 2xpi_A 336 PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTM-DPQFGPAWIGF 413 (597)
T ss_dssp TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHH
T ss_pred cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh-CCCCHHHHHHH
Confidence 5688899999999999999999999999998653 457889999999999999999999999999875 34567899999
Q ss_pred HHHHHhhcChhhHHHHHHHhccCCCCchhhHHHHHHHhhccCChHHHHHHHHHHHhccccCChhhHHHHHHHHHhcCChh
Q 044770 242 IILYGYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFID 321 (464)
Q Consensus 242 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 321 (464)
+.++.+.|++++|.++++.+....+.+..+|..++.+|.+.|++++|.++|+++.+. .+.+..+|+.++..|.+.|+++
T Consensus 414 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~ 492 (597)
T 2xpi_A 414 AHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYAL-FQYDPLLLNELGVVAFNKSDMQ 492 (597)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCChHHHHHHHHHHHHhCCHH
Confidence 999999999999999999999877778889999999999999999999999999984 3457889999999999999999
Q ss_pred HHHHHHHHHHhC----CCCccH-HHHHHHHHHHHhcCChHHHHHHHHHhHHHHhhhhhcCCCCcHHHHHHHHHHHHhcCC
Q 044770 322 KASGLLKEMSMN----GCKPNA-ITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGD 396 (464)
Q Consensus 322 ~a~~~~~~m~~~----g~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~ 396 (464)
+|.++|+++.+. +..|+. ......+...... ..-++++.+........+ +.+..+|..+..+|.+.|+
T Consensus 493 ~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~------~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~g~ 565 (597)
T 2xpi_A 493 TAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRK------LKMYDAAIDALNQGLLLS-TNDANVHTAIALVYLHKKI 565 (597)
T ss_dssp HHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHH------TTCHHHHHHHHHHHHHHS-SCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHH------hcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCC
Confidence 999999999875 556664 2222222222222 222334433333222222 3478899999999999999
Q ss_pred hhhHHHHHHHHHHcCCCCc-HHHHHHHHHHH
Q 044770 397 VGNAENLFEELKKANYTKY-TFVYNTLIKAY 426 (464)
Q Consensus 397 ~~~A~~~~~~m~~~~~~p~-~~~~~~li~~~ 426 (464)
+++|.+.|+++.+.. |+ ...|..+...|
T Consensus 566 ~~~A~~~~~~~l~~~--p~~~~~~~~l~~~~ 594 (597)
T 2xpi_A 566 PGLAITHLHESLAIS--PNEIMASDLLKRAL 594 (597)
T ss_dssp HHHHHHHHHHHHHHC--TTCHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhcC--CCChHHHHHHHHHH
Confidence 999999999999864 54 44666665544
No 3
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=100.00 E-value=5.3e-33 Score=259.18 Aligned_cols=214 Identities=8% Similarity=0.065 Sum_probs=171.1
Q ss_pred HHHHHHHHHhCCCCCcH-hHHHHHHHHHHhcChhhHHHHHHHHHHhccCCCChhhHHHHHHHHHhhcChhhHHHHHHHhc
Q 044770 184 LMKVYSDMKRSEVEPNE-VSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQ 262 (464)
Q Consensus 184 a~~~~~~m~~~~~~p~~-~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 262 (464)
+..+.+++.+.+..+.+ ..++.+|.+|++.|++++|.++|++|.+.|+.||..||+.+|.+|++.+....
T Consensus 9 ~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~--------- 79 (501)
T 4g26_A 9 SENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATE--------- 79 (501)
T ss_dssp ---------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSS---------
T ss_pred HHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhh---------
Confidence 34444555555443332 34566666666666666666666666666666666666666666665544322
Q ss_pred cCCCCchhhHHHHHHHhhccCChHHHHHHHHHHHhccccCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCccHHHH
Q 044770 263 ELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITY 342 (464)
Q Consensus 263 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~ 342 (464)
..+.+.++.|.++|++|.+.|+.||..+|+++|.+|++.|++++|.++|++|.+.|+.||..||
T Consensus 80 ----------------~~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty 143 (501)
T 4g26_A 80 ----------------SSPNPGLSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSY 143 (501)
T ss_dssp ----------------SSCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred ----------------hhhcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccee
Confidence 1234567899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCChHHHHHHHHHhHHHHhhhhhcCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCcHHHHHHH
Q 044770 343 RHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTL 422 (464)
Q Consensus 343 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l 422 (464)
+.+|.+|++.|++++|.++|++| ...|+.||..||++||.+|++.|++++|.++|++|.+.|+.|+..||+.+
T Consensus 144 n~lI~~~~~~g~~~~A~~l~~~M-------~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l 216 (501)
T 4g26_A 144 GPALFGFCRKGDADKAYEVDAHM-------VESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMI 216 (501)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHH-------HHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHH
T ss_pred hHHHHHHHHCCCHHHHHHHHHHH-------HhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHH
Confidence 99999999999999999999999 78999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHc
Q 044770 423 IKAYVKA 429 (464)
Q Consensus 423 i~~~~~~ 429 (464)
+..|+..
T Consensus 217 ~~~F~s~ 223 (501)
T 4g26_A 217 EEWFKSE 223 (501)
T ss_dssp HHHHHSH
T ss_pred HHHHhcC
Confidence 9999875
No 4
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=100.00 E-value=1.3e-32 Score=256.46 Aligned_cols=184 Identities=16% Similarity=0.123 Sum_probs=175.7
Q ss_pred hhHHHHHHHhhccCChHHHHHHHHHHHhccccCChhhHHHHHHHHHhcCC---------hhHHHHHHHHHHhCCCCccHH
Q 044770 270 KSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGF---------IDKASGLLKEMSMNGCKPNAI 340 (464)
Q Consensus 270 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~---------~~~a~~~~~~m~~~g~~p~~~ 340 (464)
..++.+|++|++.|++++|.++|++|.+.|+.||..+||+||.+|++.+. +++|.++|++|.+.|+.||..
T Consensus 27 ~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~ 106 (501)
T 4g26_A 27 ALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEA 106 (501)
T ss_dssp HHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHH
Confidence 35788999999999999999999999999999999999999999988765 678999999999999999999
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHhHHHHhhhhhcCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCcHHHHH
Q 044770 341 TYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYN 420 (464)
Q Consensus 341 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~ 420 (464)
||+++|.+|++.|++++|.++|++| ...|+.||..+|+++|.+|++.|++++|.++|++|.+.|+.||..||+
T Consensus 107 tyn~lI~~~~~~g~~~~A~~l~~~M-------~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~ 179 (501)
T 4g26_A 107 TFTNGARLAVAKDDPEMAFDMVKQM-------KAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELA 179 (501)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHH-------HHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHH-------HHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHH
Confidence 9999999999999999999999999 789999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCC--hhHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 044770 421 TLIKAYVKAKIN--DPNLLRRMILGGARPDAETYSLLKLAEQ 460 (464)
Q Consensus 421 ~li~~~~~~g~~--a~~~~~~m~~~~~~p~~~t~~~L~~~~~ 460 (464)
+||.+|++.|+. |.++|++|++.|+.|+..||++|+..+.
T Consensus 180 ~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~ 221 (501)
T 4g26_A 180 ALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFK 221 (501)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHH
T ss_pred HHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHh
Confidence 999999999984 9999999999999999999999977653
No 5
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=100.00 E-value=7.9e-29 Score=227.43 Aligned_cols=380 Identities=10% Similarity=-0.010 Sum_probs=321.0
Q ss_pred HHHHHHhhcchHHHHHHHHHHHHcCCCCCCchhHHHHHHHHHhhcChHHHHHHhhhcCCC-CCchhHHHHHHHHHHhhCc
Q 044770 32 SINRLRKLQLNKRALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQGEKLFCCIPKD-YQNELLYNNLVIACLDKGV 110 (464)
Q Consensus 32 ~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~li~~~~~~~~ 110 (464)
+...+.+.|++++|++.++.+.+.. +.+...+..+...+...|++++|...++..... +.+..+|..+...+.+.|+
T Consensus 5 ~a~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~ 82 (388)
T 1w3b_A 5 LAHREYQAGDFEAAERHCMQLWRQE--PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQ 82 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCC
Confidence 4566788999999999999998843 334556677777889999999999999887766 4467899999999999999
Q ss_pred HHHHHHHHHHHHHcCCCCchhhHHHHHHHhcCCCCcccHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhHHHHHHHH
Q 044770 111 IKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSD 190 (464)
Q Consensus 111 ~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 190 (464)
+++|+..|+++.+.. +.+..+|..+..++.+.|++++|.+.|+++.+.. +.+...+..+...+...|++++|.+.|++
T Consensus 83 ~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 160 (388)
T 1w3b_A 83 LQEAIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLK 160 (388)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 999999999999863 3356679999999999999999999999998864 44456677888999999999999999999
Q ss_pred HHhCCCCCcHhHHHHHHHHHHhcChhhHHHHHHHHHHhccCCCChhhHHHHHHHHHhhcChhhHHHHHHHhccCCCCchh
Q 044770 191 MKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSK 270 (464)
Q Consensus 191 m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 270 (464)
+.+.. +.+..+|..+...+.+.|++++|...|+++.+.. +.+...+..+...+...|++++|...++......+.+..
T Consensus 161 al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~ 238 (388)
T 1w3b_A 161 AIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAV 238 (388)
T ss_dssp HHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHH
T ss_pred HHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHH
Confidence 98763 2357789999999999999999999999998863 345678888999999999999999999988887777778
Q ss_pred hHHHHHHHhhccCChHHHHHHHHHHHhccccCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCccHHHHHHHHHHHH
Q 044770 271 SYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCF 350 (464)
Q Consensus 271 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~ 350 (464)
++..+...|...|++++|...|+++.+.. +.+..+|..+...+.+.|++++|...|+++.+.. +.+..++..+...+.
T Consensus 239 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~ 316 (388)
T 1w3b_A 239 VHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIKR 316 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHH
Confidence 89999999999999999999999998843 3356789999999999999999999999998853 447788999999999
Q ss_pred hcCChHHHHHHHHHhHHHHhhhhhcCCCC-cHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCc-HHHHHHHHHHHHH
Q 044770 351 KSNLVEEGFKALELGMKLITTKKVRSSTP-WLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKY-TFVYNTLIKAYVK 428 (464)
Q Consensus 351 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~li~~~~~ 428 (464)
..|++++|...+++++ ...| +..++..+...|.+.|++++|...|+++.+. .|+ ...|..+...+..
T Consensus 317 ~~g~~~~A~~~~~~al---------~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~--~p~~~~a~~~lg~~~~~ 385 (388)
T 1w3b_A 317 EQGNIEEAVRLYRKAL---------EVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI--SPTFADAYSNMGNTLKE 385 (388)
T ss_dssp TTTCHHHHHHHHHHHT---------TSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHH---------hcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCHHHHHhHHHHHHH
Confidence 9999999999999983 2334 5778889999999999999999999999875 354 4477777777666
Q ss_pred cC
Q 044770 429 AK 430 (464)
Q Consensus 429 ~g 430 (464)
.|
T Consensus 386 ~~ 387 (388)
T 1w3b_A 386 MQ 387 (388)
T ss_dssp TC
T ss_pred cc
Confidence 55
No 6
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.97 E-value=1.1e-26 Score=213.05 Aligned_cols=371 Identities=12% Similarity=0.063 Sum_probs=317.3
Q ss_pred HHHHHHhhcChHHHHHHhhhcCCCCC-chhHHHHHHHHHHhhCcHHHHHHHHHHHHHcCCCCchhhHHHHHHHhcCCCCc
Q 044770 68 LLEFTIKNHGISQGEKLFCCIPKDYQ-NELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRR 146 (464)
Q Consensus 68 l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~ 146 (464)
+...+.+.|++++|.+.++.+....| +...+..+...+...|++++|...++...+.. +.+..+|..+...+.+.|++
T Consensus 5 ~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~~ 83 (388)
T 1w3b_A 5 LAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQL 83 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCH
Confidence 45567789999999999998876644 56777888888999999999999999998864 56788999999999999999
Q ss_pred ccHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCc-HhHHHHHHHHHHhcChhhHHHHHHHH
Q 044770 147 KTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPN-EVSYCILATAHAVARLYTVAETYVEA 225 (464)
Q Consensus 147 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~li~~~~~~~~~~~a~~~~~~ 225 (464)
++|...|+++.+.. +.+...|..+..++.+.|++++|.+.|+++.+. .|+ ...+..+...+...|++++|...|++
T Consensus 84 ~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 160 (388)
T 1w3b_A 84 QEAIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQY--NPDLYCVRSDLGNLLKALGRLEEAKACYLK 160 (388)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHH--CTTCTHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 99999999998754 445668999999999999999999999999876 344 45677788888999999999999999
Q ss_pred HHhccCCCChhhHHHHHHHHHhhcChhhHHHHHHHhccCCCCchhhHHHHHHHhhccCChHHHHHHHHHHHhccccCChh
Q 044770 226 LEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATE 305 (464)
Q Consensus 226 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 305 (464)
+... .+.+..++..+...+...|++++|...++.+....+.....+..+...+...|++++|...|++..... +.+..
T Consensus 161 al~~-~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~ 238 (388)
T 1w3b_A 161 AIET-QPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAV 238 (388)
T ss_dssp HHHH-CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHH
T ss_pred HHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCCHH
Confidence 9876 344678899999999999999999999999998777778889999999999999999999999998743 33678
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCccHHHHHHHHHHHHhcCChHHHHHHHHHhHHHHhhhhhcCCCCcHHHHH
Q 044770 306 QYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTL 385 (464)
Q Consensus 306 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~p~~~~~~ 385 (464)
++..+..+|...|++++|...|+++.+... .+..++..+...+.+.|++++|...++.+++. .+.+..++.
T Consensus 239 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~ 309 (388)
T 1w3b_A 239 VHGNLACVYYEQGLIDLAIDTYRRAIELQP-HFPDAYCNLANALKEKGSVAEAEDCYNTALRL--------CPTHADSLN 309 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCS-SCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH--------CTTCHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--------CcccHHHHH
Confidence 899999999999999999999999998532 25678999999999999999999999999532 345778899
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHHcCCCCcHHHHHHHHHHHHHcCCC--hhHHHHHHHhCCCCCCH-HHHHHHH
Q 044770 386 SIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKIN--DPNLLRRMILGGARPDA-ETYSLLK 456 (464)
Q Consensus 386 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~--a~~~~~~m~~~~~~p~~-~t~~~L~ 456 (464)
.+...+.+.|++++|...++++.+.. +.+..+|..+...+.+.|+. |...|+++.+ +.|+. ..+..|-
T Consensus 310 ~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~--~~p~~~~a~~~lg 380 (388)
T 1w3b_A 310 NLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIR--ISPTFADAYSNMG 380 (388)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHT--TCTTCHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCCHHHHHhHH
Confidence 99999999999999999999998753 33566999999999999985 9999999987 45654 4444443
No 7
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.95 E-value=2.9e-24 Score=204.68 Aligned_cols=407 Identities=9% Similarity=0.002 Sum_probs=254.0
Q ss_pred hhchHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCCchhHHHHHHHHHhhcChHHHHHHhhhcCCCCC-chhHHHHHHHH
Q 044770 26 RGEIFHSINRLRKLQLNKRALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQGEKLFCCIPKDYQ-NELLYNNLVIA 104 (464)
Q Consensus 26 ~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~li~~ 104 (464)
...+......+.+.|++++|+..|+.+.+. .|+...+..+..++...|++++|.+.|+++....| +..+|..+..+
T Consensus 6 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 82 (514)
T 2gw1_A 6 ALALKDKGNQFFRNKKYDDAIKYYNWALEL---KEDPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASA 82 (514)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHHH---CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhc---CccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHH
Confidence 345677788899999999999999999984 37889999999999999999999999999877644 67899999999
Q ss_pred HHhhCcHHHHHHHHHHHHHcCCCCchhhHHHHHHHhcCCC-----------------------------------CcccH
Q 044770 105 CLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPG-----------------------------------RRKTI 149 (464)
Q Consensus 105 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~-----------------------------------~~~~a 149 (464)
+...|++++|+..|+++...+. ++......++..+.... .....
T Consensus 83 ~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (514)
T 2gw1_A 83 NEGLGKFADAMFDLSVLSLNGD-FNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSV 161 (514)
T ss_dssp HHHTTCHHHHHHHHHHHHHSSS-CCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCH
T ss_pred HHHHhhHHHHHHHHHHHHhcCC-CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchh
Confidence 9999999999999999988652 23332222222211100 01111
Q ss_pred HHHHHHHHhCCC---------CCChhhHHHHHHHHHc---cCChhHHHHHHHHHHh-----C--CC------CCcHhHHH
Q 044770 150 PNILRQMKADKV---------APHVSTFHILMKIEAN---DHNIEGLMKVYSDMKR-----S--EV------EPNEVSYC 204 (464)
Q Consensus 150 ~~~~~~~~~~~~---------~~~~~~~~~l~~~~~~---~~~~~~a~~~~~~m~~-----~--~~------~p~~~~~~ 204 (464)
..+...+..... +.+...+......+.. .|++++|..+|+++.+ . .. +.+..++.
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (514)
T 2gw1_A 162 TSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLE 241 (514)
T ss_dssp HHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHH
Confidence 111111111000 1113333333333333 6667777777766655 2 10 12344556
Q ss_pred HHHHHHHhcChhhHHHHHHHHHHhccCCCChhhHHHHHHHHHhhcChhhHHHHHHHhccCCCCchhhHHHHHHHhhccCC
Q 044770 205 ILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQ 284 (464)
Q Consensus 205 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 284 (464)
.+...+...|++++|...++++.+.... ..++..+..++...|++++|...++.+....+.+...+..+...+...|+
T Consensus 242 ~~~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 319 (514)
T 2gw1_A 242 HTGIFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQN 319 (514)
T ss_dssp HHHHHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCC
Confidence 6666666677777777777666655332 56666666666677777777777766666555555566666666667777
Q ss_pred hHHHHHHHHHHHhccccCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCccHHHHHHHHHHHHhcCChHHHHHHHHH
Q 044770 285 VSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALEL 364 (464)
Q Consensus 285 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 364 (464)
+++|...|+...+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++.
T Consensus 320 ~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 397 (514)
T 2gw1_A 320 YDQAGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYDL 397 (514)
T ss_dssp TTHHHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 777777776666532 2345566666666666777777777776666532 12345566666666666777777777766
Q ss_pred hHHHHhhhhhcCCCCcHHHHHHHHHHHHh---cCChhhHHHHHHHHHHcCCCCcHHHHHHHHHHHHHcCCC--hhHHHHH
Q 044770 365 GMKLITTKKVRSSTPWLETTLSIIEIFAE---KGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKIN--DPNLLRR 439 (464)
Q Consensus 365 ~~~~~~~~~~~~~~p~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~--a~~~~~~ 439 (464)
+++.... .....-....+..+...+.. .|++++|...++++.+.. +.+..+|..+...|.+.|+. |...|++
T Consensus 398 a~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 474 (514)
T 2gw1_A 398 AIELENK--LDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD-PRSEQAKIGLAQMKLQQEDIDEAITLFEE 474 (514)
T ss_dssp HHHHHHT--SSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHhhhc--cchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 6654321 11111113455566666666 677777777776666543 12344666666666666653 6666666
Q ss_pred HHhC
Q 044770 440 MILG 443 (464)
Q Consensus 440 m~~~ 443 (464)
..+.
T Consensus 475 a~~~ 478 (514)
T 2gw1_A 475 SADL 478 (514)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 6653
No 8
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.94 E-value=4.5e-23 Score=196.46 Aligned_cols=382 Identities=12% Similarity=0.015 Sum_probs=279.1
Q ss_pred hhHHHHHHHHHhhcChHHHHHHhhhcCCCCCchhHHHHHHHHHHhhCcHHHHHHHHHHHHHcCCCCchhhHHHHHHHhcC
Q 044770 63 LDYSYLLEFTIKNHGISQGEKLFCCIPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSS 142 (464)
Q Consensus 63 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~ 142 (464)
..+......+.+.|++++|...|+++....|+..+|..+..++...|++++|+..++++.+.+ +.+..++..+..++.+
T Consensus 7 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~ 85 (514)
T 2gw1_A 7 LALKDKGNQFFRNKKYDDAIKYYNWALELKEDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASANEG 85 (514)
T ss_dssp HHHHHHHHHHHHTSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhcCccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHH
Confidence 456777888999999999999999998877899999999999999999999999999999875 4467889999999999
Q ss_pred CCCcccHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHh-----------------------------
Q 044770 143 PGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKR----------------------------- 193 (464)
Q Consensus 143 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~----------------------------- 193 (464)
.|++++|...|+.+.+.+ +++......++..+........+.+.+..+..
T Consensus 86 ~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (514)
T 2gw1_A 86 LGKFADAMFDLSVLSLNG-DFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSM 164 (514)
T ss_dssp TTCHHHHHHHHHHHHHSS-SCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHH
T ss_pred HhhHHHHHHHHHHHHhcC-CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHH
Confidence 999999999999999876 45555555555544443332222222211110
Q ss_pred ------CCC---------CCcHhHHHHHHHHHHh---cChhhHHHHHHHHHHh-----ccC--------CCChhhHHHHH
Q 044770 194 ------SEV---------EPNEVSYCILATAHAV---ARLYTVAETYVEALEK-----SMT--------GNNWSTLDVLI 242 (464)
Q Consensus 194 ------~~~---------~p~~~~~~~li~~~~~---~~~~~~a~~~~~~~~~-----~~~--------~~~~~~~~~l~ 242 (464)
... +.+...+......+.. .|++++|..+++++.+ ... +.+..++..+.
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (514)
T 2gw1_A 165 ASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTG 244 (514)
T ss_dssp HHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHH
T ss_pred HHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHH
Confidence 000 1113344444444444 8999999999999987 211 22356788889
Q ss_pred HHHHhhcChhhHHHHHHHhccCCCCchhhHHHHHHHhhccCChHHHHHHHHHHHhccccCChhhHHHHHHHHHhcCChhH
Q 044770 243 ILYGYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDK 322 (464)
Q Consensus 243 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~ 322 (464)
..+...|++++|...++.+....+. ...+..+...+...|++++|...++.+.+. .+.+...|..+...+...|++++
T Consensus 245 ~~~~~~~~~~~A~~~~~~~l~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~ 322 (514)
T 2gw1_A 245 IFKFLKNDPLGAHEDIKKAIELFPR-VNSYIYMALIMADRNDSTEYYNYFDKALKL-DSNNSSVYYHRGQMNFILQNYDQ 322 (514)
T ss_dssp HHHHHSSCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHTSSCCTTGGGHHHHHHTT-CTTCTHHHHHHHHHHHHTTCTTH
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCcc-HHHHHHHHHHHHHCCCHHHHHHHHHHHhhc-CcCCHHHHHHHHHHHHHhCCHHH
Confidence 9999999999999999998874444 788999999999999999999999999884 34467789999999999999999
Q ss_pred HHHHHHHHHhCCCCccHHHHHHHHHHHHhcCChHHHHHHHHHhHHHHhhhhhcCCCCcHHHHHHHHHHHHh---cCC-hh
Q 044770 323 ASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAE---KGD-VG 398 (464)
Q Consensus 323 a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~---~g~-~~ 398 (464)
|...++++.+.... +...+..+...+...|++++|...++.+++. ... +...+..+...|.+ ... ..
T Consensus 323 A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~------~~~--~~~~~~~la~~~~~~~~~~~A~~ 393 (514)
T 2gw1_A 323 AGKDFDKAKELDPE-NIFPYIQLACLAYRENKFDDCETLFSEAKRK------FPE--APEVPNFFAEILTDKNDFDKALK 393 (514)
T ss_dssp HHHHHHHHHHTCSS-CSHHHHHHHHHTTTTTCHHHHHHHHHHHHHH------STT--CSHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhChh-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH------ccc--CHHHHHHHHHHHHHCCCHHHHHH
Confidence 99999999985422 5678888899999999999999999999643 222 33455555555532 222 22
Q ss_pred hHHHHHHHHHHcCCC-CcHHHHHHHHHHHHH---cCCC--hhHHHHHHHhCCCCCC-HHHHHHHHHHH
Q 044770 399 NAENLFEELKKANYT-KYTFVYNTLIKAYVK---AKIN--DPNLLRRMILGGARPD-AETYSLLKLAE 459 (464)
Q Consensus 399 ~A~~~~~~m~~~~~~-p~~~~~~~li~~~~~---~g~~--a~~~~~~m~~~~~~p~-~~t~~~L~~~~ 459 (464)
...+.++.....+.. -....|..+...+.. .|+. |...+++..... |+ ..++..+..++
T Consensus 394 ~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~la~~~ 459 (514)
T 2gw1_A 394 QYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD--PRSEQAKIGLAQMK 459 (514)
T ss_dssp HHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHH
T ss_pred HHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC--cccHHHHHHHHHHH
Confidence 223333334443211 114589999999999 8874 899999988753 53 44445444443
No 9
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.93 E-value=3.5e-23 Score=193.76 Aligned_cols=316 Identities=8% Similarity=-0.062 Sum_probs=263.5
Q ss_pred CccChhchHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCCchhHHHHHHHHHhhcChHHHHHHhhhcCCCC-CchhHHHH
Q 044770 22 FPVHRGEIFHSINRLRKLQLNKRALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQGEKLFCCIPKDY-QNELLYNN 100 (464)
Q Consensus 22 ~~~~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~ 100 (464)
.|.+...+..+...+.+.|++++|+.+|+.+.+.. +.+...+..+...+...|++++|...|+++.... .+..+|..
T Consensus 22 ~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 99 (450)
T 2y4t_A 22 SMADVEKHLELGKKLLAAGQLADALSQFHAAVDGD--PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQ 99 (450)
T ss_dssp -CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHH
Confidence 34567778889999999999999999999998843 4567889999999999999999999999987763 46789999
Q ss_pred HHHHHHhhCcHHHHHHHHHHHHHcCCCCch---hhHHHH------------HHHhcCCCCcccHHHHHHHHHhCCCCCCh
Q 044770 101 LVIACLDKGVIKLSLEYMKKMRVLGHSISY---LVFNRL------------IILNSSPGRRKTIPNILRQMKADKVAPHV 165 (464)
Q Consensus 101 li~~~~~~~~~~~a~~~~~~m~~~~~~~~~---~~~~~l------------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 165 (464)
+...|...|++++|...|+++.+.+ +.+. ..+..+ ...+...|++++|...|+.+.+.. +.+.
T Consensus 100 l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~ 177 (450)
T 2y4t_A 100 RGHLLLKQGKLDEAEDDFKKVLKSN-PSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVC-VWDA 177 (450)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcC-CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCh
Confidence 9999999999999999999999864 2233 555555 344888999999999999998764 5678
Q ss_pred hhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCcHhHHHHHHHHHHhcChhhHHHHHHHHHHhccCCCChhhHHHH----
Q 044770 166 STFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVL---- 241 (464)
Q Consensus 166 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l---- 241 (464)
.++..+..+|.+.|++++|...|+++.+.. +.+..+|..+..++...|++++|...++++.... +.+...+..+
T Consensus 178 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~~~~~~ 255 (450)
T 2y4t_A 178 ELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD-QDHKRCFAHYKQVK 255 (450)
T ss_dssp HHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CChHHHHHHHHHHH
Confidence 889999999999999999999999998753 3468899999999999999999999999998652 3344444444
Q ss_pred --------HHHHHhhcChhhHHHHHHHhccCCCCc----hhhHHHHHHHhhccCChHHHHHHHHHHHhccccCChhhHHH
Q 044770 242 --------IILYGYLAKGKDLERIWATVQELPNVR----SKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNS 309 (464)
Q Consensus 242 --------~~~~~~~~~~~~a~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 309 (464)
...+...|++++|...++.+....+.+ ...+..+...+.+.|++++|...++.+.+. .+.+...|..
T Consensus 256 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~-~p~~~~~~~~ 334 (450)
T 2y4t_A 256 KLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQM-EPDNVNALKD 334 (450)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH-CTTCHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CcccHHHHHH
Confidence 788999999999999999988744444 336888899999999999999999999874 3346789999
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCcc-HHHHHHHH
Q 044770 310 VISVYCKNGFIDKASGLLKEMSMNGCKPN-AITYRHLA 346 (464)
Q Consensus 310 li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~ll 346 (464)
+..+|...|++++|...|+++.+ +.|+ ...+..+.
T Consensus 335 l~~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~l~ 370 (450)
T 2y4t_A 335 RAEAYLIEEMYDEAIQDYETAQE--HNENDQQIREGLE 370 (450)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHT--TSSSCHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHH--hCcchHHHHHHHH
Confidence 99999999999999999999998 4564 44444444
No 10
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.93 E-value=1.3e-22 Score=189.81 Aligned_cols=314 Identities=10% Similarity=0.034 Sum_probs=240.1
Q ss_pred CchhHHHHHHHHHHhhCcHHHHHHHHHHHHHcCCCCchhhHHHHHHHhcCCCCcccHHHHHHHHHhCCCCCChhhHHHHH
Q 044770 93 QNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILM 172 (464)
Q Consensus 93 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 172 (464)
.+...|..+...+.+.|++++|+.+|+++.+.. +.+..++..+..++...|++++|...|+++.+.+ +.+..++..+.
T Consensus 24 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~ 101 (450)
T 2y4t_A 24 ADVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRG 101 (450)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHH
Confidence 356677777777888888888888888777653 3456777777777778888888888888877654 45566777778
Q ss_pred HHHHccCChhHHHHHHHHHHhCCCCCc-H---hHHHHH------------HHHHHhcChhhHHHHHHHHHHhccCCCChh
Q 044770 173 KIEANDHNIEGLMKVYSDMKRSEVEPN-E---VSYCIL------------ATAHAVARLYTVAETYVEALEKSMTGNNWS 236 (464)
Q Consensus 173 ~~~~~~~~~~~a~~~~~~m~~~~~~p~-~---~~~~~l------------i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 236 (464)
.+|.+.|++++|...|+++.+.. |+ . ..+..+ ...+.+.|++++|...++++.+. .+.+..
T Consensus 102 ~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-~~~~~~ 178 (450)
T 2y4t_A 102 HLLLKQGKLDEAEDDFKKVLKSN--PSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEV-CVWDAE 178 (450)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-CTTCHH
T ss_pred HHHHHcCCHHHHHHHHHHHHhcC--CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCChH
Confidence 88888888888888888877653 33 2 444444 33477888889999988888775 345677
Q ss_pred hHHHHHHHHHhhcChhhHHHHHHHhccCCCCchhhHHHHHHHhhccCChHHHHHHHHHHHhccccCChhhHHHH------
Q 044770 237 TLDVLIILYGYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSV------ 310 (464)
Q Consensus 237 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l------ 310 (464)
++..+..++...|++++|...++.+....+.+..++..+...|...|++++|...|+.+.... +.+...+..+
T Consensus 179 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~~~~~~~~ 257 (450)
T 2y4t_A 179 LRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD-QDHKRCFAHYKQVKKL 257 (450)
T ss_dssp HHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CChHHHHHHHHHHHHH
Confidence 888888888889999999998888877666677788889999999999999999999888632 2234444444
Q ss_pred ------HHHHHhcCChhHHHHHHHHHHhCCCCcc-----HHHHHHHHHHHHhcCChHHHHHHHHHhHHHHhhhhhcCCCC
Q 044770 311 ------ISVYCKNGFIDKASGLLKEMSMNGCKPN-----AITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTP 379 (464)
Q Consensus 311 ------i~~~~~~~~~~~a~~~~~~m~~~g~~p~-----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~p 379 (464)
...+...|++++|...|+++.+. .|+ ...+..+...+.+.|++++|...++.+++. .+.
T Consensus 258 ~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~--------~p~ 327 (450)
T 2y4t_A 258 NKLIESAEELIRDGRYTDATSKYESVMKT--EPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQM--------EPD 327 (450)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH--------CTT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------Ccc
Confidence 78889999999999999999884 454 346788888899999999999999998532 233
Q ss_pred cHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCc-HHHHHHHHH
Q 044770 380 WLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKY-TFVYNTLIK 424 (464)
Q Consensus 380 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~li~ 424 (464)
+...|..+..+|...|++++|...|+++.+.. |+ ...+..+..
T Consensus 328 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~l~~ 371 (450)
T 2y4t_A 328 NVNALKDRAEAYLIEEMYDEAIQDYETAQEHN--ENDQQIREGLEK 371 (450)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS--SSCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--cchHHHHHHHHH
Confidence 67888999999999999999999999998853 54 446665553
No 11
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.92 E-value=2.7e-22 Score=192.23 Aligned_cols=405 Identities=10% Similarity=0.046 Sum_probs=309.2
Q ss_pred cChhchHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCCchhHHHHHHHHHhhcChHHHHHHhhhcCCC-CCchhHHHHHH
Q 044770 24 VHRGEIFHSINRLRKLQLNKRALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQGEKLFCCIPKD-YQNELLYNNLV 102 (464)
Q Consensus 24 ~~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~li 102 (464)
.....+......+.+.|++++|++.|+.+.+.. +.+...+..+..++...|++++|.+.|+++... +.+..+|..+.
T Consensus 23 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 100 (537)
T 3fp2_A 23 AYAVQLKNRGNHFFTAKNFNEAIKYYQYAIELD--PNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRA 100 (537)
T ss_dssp HHHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhC--CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHH
Confidence 345677888899999999999999999999854 456788999999999999999999999998776 34678899999
Q ss_pred HHHHhhCcHHHHHHHHHHHHHcCCCCchhhHHHHHHHhcCCCCcccHHHHHHHHHhCC------CCCChh----------
Q 044770 103 IACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADK------VAPHVS---------- 166 (464)
Q Consensus 103 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~---------- 166 (464)
..+...|++++|+..|+.+ .. .|+.. ...+..+...+....|...++.+.... ..|+..
T Consensus 101 ~~~~~~g~~~~A~~~~~~~-~~--~~~~~--~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (537)
T 3fp2_A 101 SANESLGNFTDAMFDLSVL-SL--NGDFD--GASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFD 175 (537)
T ss_dssp HHHHHHTCHHHHHHHHHHH-C---------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSC
T ss_pred HHHHHcCCHHHHHHHHHHH-hc--CCCCC--hHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcC
Confidence 9999999999999999633 32 22211 111222333333456777777664420 111111
Q ss_pred --------------------hHHHHHHHHHc--------cCChhHHHHHHHHHHhCCCCCc--------HhHHHHHHHHH
Q 044770 167 --------------------TFHILMKIEAN--------DHNIEGLMKVYSDMKRSEVEPN--------EVSYCILATAH 210 (464)
Q Consensus 167 --------------------~~~~l~~~~~~--------~~~~~~a~~~~~~m~~~~~~p~--------~~~~~~li~~~ 210 (464)
....+...+.. .|++++|..+|+++.+.. |+ ..++..+...+
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~--p~~~~~~~~~~~~~~~~g~~~ 253 (537)
T 3fp2_A 176 SHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSAN--TVDDPLRENAALALCYTGIFH 253 (537)
T ss_dssp HHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHC--CCcchhhHHHHHHHHHHHHHH
Confidence 22222222222 247899999999998763 33 23466677788
Q ss_pred HhcChhhHHHHHHHHHHhccCCCChhhHHHHHHHHHhhcChhhHHHHHHHhccCCCCchhhHHHHHHHhhccCChHHHHH
Q 044770 211 AVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEE 290 (464)
Q Consensus 211 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 290 (464)
...|++++|...++++.+.. |+..++..+...+...|+++.|...++.+....+.+..++..+...+...|++++|..
T Consensus 254 ~~~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 331 (537)
T 3fp2_A 254 FLKNNLLDAQVLLQESINLH--PTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKE 331 (537)
T ss_dssp HHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HhcccHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHH
Confidence 89999999999999998864 4478888999999999999999999999988777778889999999999999999999
Q ss_pred HHHHHHhccccCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCccHHHHHHHHHHHHhcCChHHHHHHHHHhHHHHh
Q 044770 291 LWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLIT 370 (464)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 370 (464)
.|++..+.. +.+...|..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++.+++...
T Consensus 332 ~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~ 409 (537)
T 3fp2_A 332 DFQKAQSLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEE 409 (537)
T ss_dssp HHHHHHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCC
Confidence 999998843 3467789999999999999999999999998853 23567888889999999999999999999987654
Q ss_pred hhhhcCCCCcHHHHHHHHHHHHhc----------CChhhHHHHHHHHHHcCCCCcHHHHHHHHHHHHHcCCC--hhHHHH
Q 044770 371 TKKVRSSTPWLETTLSIIEIFAEK----------GDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKIN--DPNLLR 438 (464)
Q Consensus 371 ~~~~~~~~p~~~~~~~li~~~~~~----------g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~--a~~~~~ 438 (464)
. ..........+..+...+... |++++|...|+++.+.. +.+...|..+...|.+.|+. |.+.|+
T Consensus 410 ~--~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 486 (537)
T 3fp2_A 410 V--QEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELD-PRSEQAKIGLAQLKLQMEKIDEAIELFE 486 (537)
T ss_dssp H--CSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred c--chhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 2 222222333445666778888 99999999999999864 23566899999999999984 999999
Q ss_pred HHHhCC
Q 044770 439 RMILGG 444 (464)
Q Consensus 439 ~m~~~~ 444 (464)
+..+..
T Consensus 487 ~al~~~ 492 (537)
T 3fp2_A 487 DSAILA 492 (537)
T ss_dssp HHHHHC
T ss_pred HHHHhC
Confidence 998864
No 12
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.90 E-value=3.5e-20 Score=177.46 Aligned_cols=388 Identities=10% Similarity=-0.022 Sum_probs=297.7
Q ss_pred CCCCCcchhhHHHHhhcCccChhchHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCCchhHHHHHHHHHhhcChHHHHHH
Q 044770 5 PRGEPVGSAFQSWMREGFPVHRGEIFHSINRLRKLQLNKRALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQGEKL 84 (464)
Q Consensus 5 ~~~~~~~~~l~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 84 (464)
.+...+...++...+.. |.+...+..+...+...|++++|++.++.+.+.. +.+...+..+..++...|++++|...
T Consensus 39 g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~ 115 (537)
T 3fp2_A 39 KNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIK--PDHSKALLRRASANESLGNFTDAMFD 115 (537)
T ss_dssp TCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred ccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHHcCCHHHHHHH
Confidence 34567778888877764 4577888999999999999999999999999854 34677889999999999999999999
Q ss_pred hhhcCCCCCchhHHHHHHHHHHhhCcHHHHHHHHHHHHHcC------CCCchh---------------------------
Q 044770 85 FCCIPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLG------HSISYL--------------------------- 131 (464)
Q Consensus 85 ~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~------~~~~~~--------------------------- 131 (464)
|+.+... |+ ..+..+..+...+....|+..++.+.... ..|+..
T Consensus 116 ~~~~~~~-~~--~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (537)
T 3fp2_A 116 LSVLSLN-GD--FDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTA 192 (537)
T ss_dssp HHHHC--------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCCCCSSCSS
T ss_pred HHHHhcC-CC--CChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHhhccccccH
Confidence 9755432 22 22233445556666788888888885531 112211
Q ss_pred ---hHHHHHHHhcCC--------CCcccHHHHHHHHHhCCCCCC-------hhhHHHHHHHHHccCChhHHHHHHHHHHh
Q 044770 132 ---VFNRLIILNSSP--------GRRKTIPNILRQMKADKVAPH-------VSTFHILMKIEANDHNIEGLMKVYSDMKR 193 (464)
Q Consensus 132 ---~~~~l~~~~~~~--------~~~~~a~~~~~~~~~~~~~~~-------~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 193 (464)
....+...+... |++++|..+++.+.+.. +.+ ..++..+...+...|++++|...|++..+
T Consensus 193 ~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~ 271 (537)
T 3fp2_A 193 YALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSAN-TVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESIN 271 (537)
T ss_dssp HHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHC-CCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHh
Confidence 223333333332 37889999999998753 233 23466777888899999999999999988
Q ss_pred CCCCCcHhHHHHHHHHHHhcChhhHHHHHHHHHHhccCCCChhhHHHHHHHHHhhcChhhHHHHHHHhccCCCCchhhHH
Q 044770 194 SEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSKSYV 273 (464)
Q Consensus 194 ~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 273 (464)
. .|+...|..+...+...|++++|...++++.+.. +.+..++..+...+...|++++|...++.+....+.+...+.
T Consensus 272 ~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~ 348 (537)
T 3fp2_A 272 L--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYI 348 (537)
T ss_dssp H--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCSHHHH
T ss_pred c--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence 6 5667888889999999999999999999998763 456788999999999999999999999999886666778899
Q ss_pred HHHHHhhccCChHHHHHHHHHHHhccccCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCC-----CccHHHHHHHHHH
Q 044770 274 LAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGC-----KPNAITYRHLALG 348 (464)
Q Consensus 274 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~-----~p~~~~~~~ll~~ 348 (464)
.+...+...|++++|...|+.+.+. .+.+...+..+...+...|++++|...|+++.+... ......+......
T Consensus 349 ~la~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~ 427 (537)
T 3fp2_A 349 QLACLLYKQGKFTESEAFFNETKLK-FPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATI 427 (537)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH-CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHh-CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHH
Confidence 9999999999999999999999984 344677899999999999999999999999876321 1112224444566
Q ss_pred HHhc----------CChHHHHHHHHHhHHHHhhhhhcCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHHHcC
Q 044770 349 CFKS----------NLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKAN 411 (464)
Q Consensus 349 ~~~~----------~~~~~a~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 411 (464)
+... |++++|...++.+++. .+.+...+..+...|.+.|++++|...|++..+..
T Consensus 428 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 492 (537)
T 3fp2_A 428 LARQSSQDPTQLDEEKFNAAIKLLTKACEL--------DPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILA 492 (537)
T ss_dssp HHHHHTC----CCHHHHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHhhccchhhhHhHHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 7777 9999999999999532 22356778899999999999999999999999864
No 13
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.89 E-value=1.6e-19 Score=163.32 Aligned_cols=314 Identities=11% Similarity=0.034 Sum_probs=197.3
Q ss_pred hhHHHHHHHHHHhhCcHHHHHHHHHHHHHcCCCCchhhHHHHHHHhcCCCCcccHHHHHHHHHhCCCCCChhhHHHHHHH
Q 044770 95 ELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKI 174 (464)
Q Consensus 95 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 174 (464)
...+..+...+...|++++|+..|+++.+.. +.+..++..+...+...|++++|...|+.+.+.. +.+...+..+...
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~ 80 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGHL 80 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHHH
Confidence 3445555566666666666666666666542 2345556666666666666666666666665543 3344556666666
Q ss_pred HHccCChhHHHHHHHHHHhCCCCC----cHhHHHHH------------HHHHHhcChhhHHHHHHHHHHhccCCCChhhH
Q 044770 175 EANDHNIEGLMKVYSDMKRSEVEP----NEVSYCIL------------ATAHAVARLYTVAETYVEALEKSMTGNNWSTL 238 (464)
Q Consensus 175 ~~~~~~~~~a~~~~~~m~~~~~~p----~~~~~~~l------------i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 238 (464)
+...|++++|...|++..+. .| +...+..+ ...+...|++++|...++++.+. .+.+...+
T Consensus 81 ~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~ 157 (359)
T 3ieg_A 81 LLKQGKLDEAEDDFKKVLKS--NPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEV-CVWDAELR 157 (359)
T ss_dssp HHHHTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHH
T ss_pred HHHcCChHHHHHHHHHHHhc--CCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-CCCchHHH
Confidence 66666666666666666654 23 22333332 45666777777777777777665 33455666
Q ss_pred HHHHHHHHhhcChhhHHHHHHHhccCCCCchhhHHHHHHHhhccCChHHHHHHHHHHHhccccCChhhHH----------
Q 044770 239 DVLIILYGYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYN---------- 308 (464)
Q Consensus 239 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~---------- 308 (464)
..+..++...|++++|...++.+....+.+...+..+...+...|++++|...|+...+.. +.+...+.
T Consensus 158 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~ 236 (359)
T 3ieg_A 158 ELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD-QDHKRCFAHYKQVKKLNK 236 (359)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-ccchHHHHHHHHHHHHHH
Confidence 6777777777777777777777766666666677777777777777777777777776632 22222222
Q ss_pred --HHHHHHHhcCChhHHHHHHHHHHhCCCCcc-H----HHHHHHHHHHHhcCChHHHHHHHHHhHHHHhhhhhcCCCCcH
Q 044770 309 --SVISVYCKNGFIDKASGLLKEMSMNGCKPN-A----ITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWL 381 (464)
Q Consensus 309 --~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~p~~ 381 (464)
.+...+.+.|++++|...++++.+.. |+ . ..+..+...+...|++++|...++.+++. .+.+.
T Consensus 237 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--------~~~~~ 306 (359)
T 3ieg_A 237 LIESAEELIRDGRYTDATSKYESVMKTE--PSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQM--------EPDNV 306 (359)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC--CSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--------CcccH
Confidence 22556777788888888888777643 33 2 22344566777788888888888877431 12256
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCc-HHHHHHHHHHH
Q 044770 382 ETTLSIIEIFAEKGDVGNAENLFEELKKANYTKY-TFVYNTLIKAY 426 (464)
Q Consensus 382 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~li~~~ 426 (464)
..+..+...|.+.|++++|...|+++.+.. |+ ...+..+..+.
T Consensus 307 ~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~l~~~~ 350 (359)
T 3ieg_A 307 NALKDRAEAYLIEEMYDEAIQDYEAAQEHN--ENDQQIREGLEKAQ 350 (359)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCChHHHHHHHHHH
Confidence 677777888888888888888888877653 44 33555554444
No 14
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.89 E-value=9.2e-20 Score=164.97 Aligned_cols=315 Identities=8% Similarity=-0.072 Sum_probs=243.7
Q ss_pred ChhchHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCCchhHHHHHHHHHhhcChHHHHHHhhhcCCCCC-chhHHHHHHH
Q 044770 25 HRGEIFHSINRLRKLQLNKRALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQGEKLFCCIPKDYQ-NELLYNNLVI 103 (464)
Q Consensus 25 ~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~li~ 103 (464)
+...+..+...+...|++++|+..|+.+.+.. +.+...+..+...+...|++++|...|+++....| +...|..+..
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 79 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD--PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGH 79 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHH
Confidence 34567778889999999999999999998854 34677889999999999999999999999877644 6788999999
Q ss_pred HHHhhCcHHHHHHHHHHHHHcCCC--CchhhHHHH------------HHHhcCCCCcccHHHHHHHHHhCCCCCChhhHH
Q 044770 104 ACLDKGVIKLSLEYMKKMRVLGHS--ISYLVFNRL------------IILNSSPGRRKTIPNILRQMKADKVAPHVSTFH 169 (464)
Q Consensus 104 ~~~~~~~~~~a~~~~~~m~~~~~~--~~~~~~~~l------------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 169 (464)
.+...|++++|+..|++..+.... .+...+..+ ...+...|++++|...++.+.+.. +.+...+.
T Consensus 80 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ 158 (359)
T 3ieg_A 80 LLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVC-VWDAELRE 158 (359)
T ss_dssp HHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred HHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCchHHHH
Confidence 999999999999999999885320 244455444 477888999999999999998764 56778888
Q ss_pred HHHHHHHccCChhHHHHHHHHHHhCCCCCcHhHHHHHHHHHHhcChhhHHHHHHHHHHhccCCCChhhHH----------
Q 044770 170 ILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLD---------- 239 (464)
Q Consensus 170 ~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~---------- 239 (464)
.+...+...|++++|...+++..+.. +.+..++..+...+...|++++|...+++..+.. +.+...+.
T Consensus 159 ~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~ 236 (359)
T 3ieg_A 159 LRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD-QDHKRCFAHYKQVKKLNK 236 (359)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-ccchHHHHHHHHHHHHHH
Confidence 89999999999999999999998764 3467788889999999999999999999988753 22333332
Q ss_pred --HHHHHHHhhcChhhHHHHHHHhccCCCCchh----hHHHHHHHhhccCChHHHHHHHHHHHhccccCChhhHHHHHHH
Q 044770 240 --VLIILYGYLAKGKDLERIWATVQELPNVRSK----SYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISV 313 (464)
Q Consensus 240 --~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 313 (464)
.+...+...|++++|...++.+....+.+.. .+..+...+...|++++|...++...+. .+.+...|..+...
T Consensus 237 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~ 315 (359)
T 3ieg_A 237 LIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQM-EPDNVNALKDRAEA 315 (359)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-CcccHHHHHHHHHH
Confidence 2255677888888888888877764333332 2445677788888888888888888774 33467778888888
Q ss_pred HHhcCChhHHHHHHHHHHhCCCCcc-HHHHHHHHH
Q 044770 314 YCKNGFIDKASGLLKEMSMNGCKPN-AITYRHLAL 347 (464)
Q Consensus 314 ~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~ 347 (464)
+...|++++|...|++..+. .|+ ...+..+..
T Consensus 316 ~~~~g~~~~A~~~~~~a~~~--~p~~~~~~~~l~~ 348 (359)
T 3ieg_A 316 YLIEEMYDEAIQDYEAAQEH--NENDQQIREGLEK 348 (359)
T ss_dssp HHHTTCHHHHHHHHHHHHTT--CTTCHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHhc--CCCChHHHHHHHH
Confidence 88888888888888888874 454 333444333
No 15
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.86 E-value=2.4e-19 Score=160.33 Aligned_cols=301 Identities=7% Similarity=-0.074 Sum_probs=185.8
Q ss_pred cCccChhchHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCCchhHHHHHHHHHhhcChHHHHHHhhhcCCCC-CchhHHH
Q 044770 21 GFPVHRGEIFHSINRLRKLQLNKRALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQGEKLFCCIPKDY-QNELLYN 99 (464)
Q Consensus 21 g~~~~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~ 99 (464)
+.+.+...+......+...|++++|+++|+.+.+.. +.+...+..++..+...|++++|...++++.... .+...|.
T Consensus 17 ~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 94 (330)
T 3hym_B 17 GLQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD--PFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVSWF 94 (330)
T ss_dssp ---CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHH
T ss_pred hchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHH
Confidence 344566667777777777777777777777777643 2344455566666777777777777777665552 3456667
Q ss_pred HHHHHHHhhC-cHHHHHHHHHHHHHcCCCCchhhHHHHHHHhcCCCCcccHHHHHHHHHhCCCCCChhhHHHHHHHHHcc
Q 044770 100 NLVIACLDKG-VIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEAND 178 (464)
Q Consensus 100 ~li~~~~~~~-~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 178 (464)
.+...+...| ++++|...|++..+.. +.+...|..+...+...|++++|...|+++.+.. +.+...+..+...+...
T Consensus 95 ~l~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~ 172 (330)
T 3hym_B 95 AVGCYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLT 172 (330)
T ss_dssp HHHHHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHT
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHH
Confidence 7777777777 7777777777776643 2345566666666666677777777776666543 33345555566666666
Q ss_pred CChhHHHHHHHHHHhCCCCCcHhHHHHHHHHHHhcChhhHHHHHHHHHHhccCCCChhhHHHHHHHHHhhcChhhHHHHH
Q 044770 179 HNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIW 258 (464)
Q Consensus 179 ~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 258 (464)
|++++|...|++..+.. +.+...+..+...+...|++++|...++++.+.......
T Consensus 173 ~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~----------------------- 228 (330)
T 3hym_B 173 NNSKLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGN----------------------- 228 (330)
T ss_dssp TCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSC-----------------------
T ss_pred hhHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccc-----------------------
Confidence 67777776666666543 224555666666666666666666666665443110000
Q ss_pred HHhccCCCCchhhHHHHHHHhhccCChHHHHHHHHHHHhccccCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCc-
Q 044770 259 ATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKP- 337 (464)
Q Consensus 259 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p- 337 (464)
....+.....+..+...|...|++++|...|++..+.. +.+...|..+...+...|++++|...|++..+. .|
T Consensus 229 ---~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~ 302 (330)
T 3hym_B 229 ---EVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLI-PQNASTYSAIGYIHSLMGNFENAVDYFHTALGL--RRD 302 (330)
T ss_dssp ---SCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTT--CSC
T ss_pred ---cccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhC-ccchHHHHHHHHHHHHhccHHHHHHHHHHHHcc--CCC
Confidence 00012233456677777777777777777777777633 335667777777788888888888888777763 34
Q ss_pred cHHHHHHHHHHH-HhcCCh
Q 044770 338 NAITYRHLALGC-FKSNLV 355 (464)
Q Consensus 338 ~~~~~~~ll~~~-~~~~~~ 355 (464)
+...+..+..++ ...|+.
T Consensus 303 ~~~~~~~l~~~~~~~~g~~ 321 (330)
T 3hym_B 303 DTFSVTMLGHCIEMYIGDS 321 (330)
T ss_dssp CHHHHHHHHHHHHTTTTC-
T ss_pred chHHHHHHHHHHHHHhCch
Confidence 455566666655 344443
No 16
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.86 E-value=1.2e-18 Score=155.64 Aligned_cols=291 Identities=11% Similarity=-0.057 Sum_probs=194.3
Q ss_pred chhHHHHHHHHHHhhCcHHHHHHHHHHHHHcCCCCchhhHHHHHHHhcCCCCcccHHHHHHHHHhCCCCCChhhHHHHHH
Q 044770 94 NELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMK 173 (464)
Q Consensus 94 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 173 (464)
+...+..+...+...|++++|+++|+++.+.. +.+...+..++..+...|++++|..+++++.+.. +.+...+..+..
T Consensus 21 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 98 (330)
T 3hym_B 21 NLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVGC 98 (330)
T ss_dssp CCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHH
Confidence 34445555555555566666666666555542 2234444445555555566666666666655532 334455556666
Q ss_pred HHHccC-ChhHHHHHHHHHHhCCCCCcHhHHHHHHHHHHhcChhhHHHHHHHHHHhccCCCChhhHHHHHHHHHhhcChh
Q 044770 174 IEANDH-NIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGK 252 (464)
Q Consensus 174 ~~~~~~-~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 252 (464)
.+...| ++++|...|++..+.. +.+...|..+..++...|++++|...++++.+.. +.+...+..+...+...|+++
T Consensus 99 ~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~ 176 (330)
T 3hym_B 99 YYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTNNSK 176 (330)
T ss_dssp HHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTTCHH
T ss_pred HHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHhhHH
Confidence 666666 6666666666665543 2234556666666666666666666666665542 223445555666677777777
Q ss_pred hHHHHHHHhccCCCCchhhHHHHHHHhhccCChHHHHHHHHHHHhcc--------ccCChhhHHHHHHHHHhcCChhHHH
Q 044770 253 DLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVK--------QLKATEQYNSVISVYCKNGFIDKAS 324 (464)
Q Consensus 253 ~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--------~~~~~~~~~~li~~~~~~~~~~~a~ 324 (464)
+|...++......+.+...+..+...+...|++++|...+++..+.. .+.....|..+...+...|++++|.
T Consensus 177 ~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 256 (330)
T 3hym_B 177 LAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEAL 256 (330)
T ss_dssp HHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHH
Confidence 77777777666666666778888888888999999999988877632 1344678999999999999999999
Q ss_pred HHHHHHHhCCCCccHHHHHHHHHHHHhcCChHHHHHHHHHhHHHHhhhhhcCCCC-cHHHHHHHHHHH-HhcCChh
Q 044770 325 GLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTP-WLETTLSIIEIF-AEKGDVG 398 (464)
Q Consensus 325 ~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~p-~~~~~~~li~~~-~~~g~~~ 398 (464)
..+++..+.. +.+...+..+...+...|++++|...++.++ ...| +...+..+..++ ...|+.+
T Consensus 257 ~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al---------~~~p~~~~~~~~l~~~~~~~~g~~~ 322 (330)
T 3hym_B 257 DYHRQALVLI-PQNASTYSAIGYIHSLMGNFENAVDYFHTAL---------GLRRDDTFSVTMLGHCIEMYIGDSE 322 (330)
T ss_dssp HHHHHHHHHS-TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTT---------TTCSCCHHHHHHHHHHHHTTTTC--
T ss_pred HHHHHHHhhC-ccchHHHHHHHHHHHHhccHHHHHHHHHHHH---------ccCCCchHHHHHHHHHHHHHhCchh
Confidence 9999998853 2256788899999999999999999999983 4455 566777777777 4555543
No 17
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.85 E-value=2.9e-19 Score=162.41 Aligned_cols=292 Identities=8% Similarity=-0.097 Sum_probs=232.3
Q ss_pred HhhcChHHHHH-HhhhcCCCCC-----chhHHHHHHHHHHhhCcHHHHHHHHHHHHHcCCCCchhhHHHHHHHhcCCCCc
Q 044770 73 IKNHGISQGEK-LFCCIPKDYQ-----NELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRR 146 (464)
Q Consensus 73 ~~~g~~~~a~~-~~~~~~~~~~-----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~ 146 (464)
...|++++|.+ .|++.....| +...+..+...+...|++++|+..|+++.+.. +.+..++..+...+...|++
T Consensus 36 ~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~ 114 (368)
T 1fch_A 36 PWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQE 114 (368)
T ss_dssp ----------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCH
Confidence 34578888988 8886655422 34668888999999999999999999999864 45678889999999999999
Q ss_pred ccHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCcHhHHHH---------------HHHHHH
Q 044770 147 KTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCI---------------LATAHA 211 (464)
Q Consensus 147 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~---------------li~~~~ 211 (464)
++|...|+++.+.. +.+..++..+...+...|++++|...|+++.+.... +...+.. .+..+.
T Consensus 115 ~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (368)
T 1fch_A 115 LLAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPA-YAHLVTPAEEGAGGAGLGPSKRILGSLL 192 (368)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTT-TGGGCC---------------CTTHHHH
T ss_pred HHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHhhhhcccHHHHHHHHHh
Confidence 99999999998865 567888999999999999999999999999876422 2222221 234444
Q ss_pred hcChhhHHHHHHHHHHhccCCC-ChhhHHHHHHHHHhhcChhhHHHHHHHhccCCCCchhhHHHHHHHhhccCChHHHHH
Q 044770 212 VARLYTVAETYVEALEKSMTGN-NWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEE 290 (464)
Q Consensus 212 ~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 290 (464)
..|++++|...++++.+..... +..++..+...+...|++++|...++.+....+.+...+..+...+...|++++|..
T Consensus 193 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 272 (368)
T 1fch_A 193 SDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVA 272 (368)
T ss_dssp HHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred hcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 8999999999999998764332 578889999999999999999999999888777777889999999999999999999
Q ss_pred HHHHHHhccccCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCc----------cHHHHHHHHHHHHhcCChHHHHH
Q 044770 291 LWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKP----------NAITYRHLALGCFKSNLVEEGFK 360 (464)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p----------~~~~~~~ll~~~~~~~~~~~a~~ 360 (464)
.|+++.+.. +.+...+..+..+|.+.|++++|...|+++.+..... ...+|..+..++...|++++|..
T Consensus 273 ~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 351 (368)
T 1fch_A 273 AYRRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGA 351 (368)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHH
T ss_pred HHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHH
Confidence 999998743 3467889999999999999999999999988732111 16789999999999999999999
Q ss_pred HHHHhHHH
Q 044770 361 ALELGMKL 368 (464)
Q Consensus 361 ~~~~~~~~ 368 (464)
++...++.
T Consensus 352 ~~~~~l~~ 359 (368)
T 1fch_A 352 ADARDLST 359 (368)
T ss_dssp HHTTCHHH
T ss_pred hHHHHHHH
Confidence 98877543
No 18
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.85 E-value=2.4e-17 Score=157.22 Aligned_cols=406 Identities=13% Similarity=0.057 Sum_probs=294.2
Q ss_pred ccChhchHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCCchhHHHHHHHHHhhcChHHHHHHhhhcCCCCCchhHHHHHH
Q 044770 23 PVHRGEIFHSINRLRKLQLNKRALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQGEKLFCCIPKDYQNELLYNNLV 102 (464)
Q Consensus 23 ~~~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~li 102 (464)
|-+...+..++. +.+.|+++.|..+|+.+.+.. +.+...|..++..+.+.|++++|..+|++.....|+...|...+
T Consensus 10 P~~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~--P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p~~~lw~~~~ 86 (530)
T 2ooe_A 10 PYDLDAWSILIR-EAQNQPIDKARKTYERLVAQF--PSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVLHIDLWKCYL 86 (530)
T ss_dssp TTCHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCCCHHHHHHHH
T ss_pred CCCHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChHHHHHHH
Confidence 456777888887 477899999999999999843 45677899999999999999999999999998878888888877
Q ss_pred HHH-HhhCcHHHHHH----HHHHHHHc-CCCC-chhhHHHHHHHhcC---------CCCcccHHHHHHHHHhCCCCCChh
Q 044770 103 IAC-LDKGVIKLSLE----YMKKMRVL-GHSI-SYLVFNRLIILNSS---------PGRRKTIPNILRQMKADKVAPHVS 166 (464)
Q Consensus 103 ~~~-~~~~~~~~a~~----~~~~m~~~-~~~~-~~~~~~~l~~~~~~---------~~~~~~a~~~~~~~~~~~~~~~~~ 166 (464)
... ...|+++.|.+ +|+..... |..| +...|...+....+ .|+++.|..+|++.++....+...
T Consensus 87 ~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~ 166 (530)
T 2ooe_A 87 SYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQ 166 (530)
T ss_dssp HHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHH
T ss_pred HHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHH
Confidence 543 34566666654 77776653 5443 45677777766543 678999999999998731111123
Q ss_pred hHHHHHHHH-------------HccCChhHHHHHHHHHH------hCC---CCCc--------HhHHHHHHHHHHhc---
Q 044770 167 TFHILMKIE-------------ANDHNIEGLMKVYSDMK------RSE---VEPN--------EVSYCILATAHAVA--- 213 (464)
Q Consensus 167 ~~~~l~~~~-------------~~~~~~~~a~~~~~~m~------~~~---~~p~--------~~~~~~li~~~~~~--- 213 (464)
.|....... ...++++.|..+++++. +.. ++|+ ...|...+......
T Consensus 167 ~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~ 246 (530)
T 2ooe_A 167 LWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLR 246 (530)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSC
T ss_pred HHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCcc
Confidence 343322211 13456777877777632 221 2443 23455444332221
Q ss_pred -Chh----hHHHHHHHHHHhccCCCChhhHHHHHHHHHh-------hcChh-------hHHHHHHHhcc-CCCCchhhHH
Q 044770 214 -RLY----TVAETYVEALEKSMTGNNWSTLDVLIILYGY-------LAKGK-------DLERIWATVQE-LPNVRSKSYV 273 (464)
Q Consensus 214 -~~~----~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~~~~~-------~a~~~~~~~~~-~~~~~~~~~~ 273 (464)
++. ..+..+|++.... .+.++..|......+.. .|+.+ +|..+++.... ..+.+...|.
T Consensus 247 ~~~~~~~~~~a~~~y~~al~~-~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~ 325 (530)
T 2ooe_A 247 TEDQTLITKRVMFAYEQCLLV-LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYF 325 (530)
T ss_dssp CSCSHHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHH
T ss_pred CCcchhHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHH
Confidence 222 3677889988876 44567788888887775 68877 89999999987 5566778899
Q ss_pred HHHHHhhccCChHHHHHHHHHHHhccccCC-h-hhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCccHHHHHHHHHH-HH
Q 044770 274 LAIEAFGRIAQVSRAEELWLEMQSVKQLKA-T-EQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALG-CF 350 (464)
Q Consensus 274 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~-~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~-~~ 350 (464)
.++..+.+.|++++|..+|+++.+. .|+ . ..|...+..+.+.|++++|..+|++..+... .+...|...... +.
T Consensus 326 ~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~-~~~~~~~~~a~~~~~ 402 (530)
T 2ooe_A 326 AYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDAR-TRHHVYVTAALMEYY 402 (530)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTT-CCTHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHHhCc--cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccC-CchHHHHHHHHHHHH
Confidence 9999999999999999999999984 343 2 5799999999999999999999999998532 123333322222 34
Q ss_pred hcCChHHHHHHHHHhHHHHhhhhhcCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHHHcC-CCCc--HHHHHHHHHHHH
Q 044770 351 KSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKAN-YTKY--TFVYNTLIKAYV 427 (464)
Q Consensus 351 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~p~--~~~~~~li~~~~ 427 (464)
..|+.++|..+|+.+++.. +.+...|..++..+.+.|+.++|..+|++....+ ..|+ ...|...+.-..
T Consensus 403 ~~~~~~~A~~~~e~al~~~--------p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~ 474 (530)
T 2ooe_A 403 CSKDKSVAFKIFELGLKKY--------GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFES 474 (530)
T ss_dssp HTCCHHHHHHHHHHHHHHH--------TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHH
T ss_pred HcCChhHHHHHHHHHHHHC--------CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Confidence 6899999999999996431 2356788899999999999999999999999864 2332 348988899888
Q ss_pred HcCCC--hhHHHHHHHhC
Q 044770 428 KAKIN--DPNLLRRMILG 443 (464)
Q Consensus 428 ~~g~~--a~~~~~~m~~~ 443 (464)
..|+. +..++.++.+.
T Consensus 475 ~~G~~~~~~~~~~r~~~~ 492 (530)
T 2ooe_A 475 NIGDLASILKVEKRRFTA 492 (530)
T ss_dssp HSSCHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHH
Confidence 89974 77788887764
No 19
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.84 E-value=1.6e-19 Score=163.97 Aligned_cols=285 Identities=8% Similarity=-0.045 Sum_probs=222.2
Q ss_pred cChHHHHHHhhhcCCC-CCchhHHHHHHHHHHhhCcHHHHHHHHHHHHHcCCCCchhhHHHHHHHhcCCCCcccHHHHHH
Q 044770 76 HGISQGEKLFCCIPKD-YQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILR 154 (464)
Q Consensus 76 g~~~~a~~~~~~~~~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 154 (464)
+....+...+...... ..+...|..+...+.+.|++++|+..|+++.+.. +.+..++..+...+...|++++|...|+
T Consensus 45 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~ 123 (365)
T 4eqf_A 45 VTVSASEKGYYFHTENPFKDWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQ 123 (365)
T ss_dssp --------CCCCCSSCTTTTCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred hhhHHHHHhhhcccCCcccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 3334444444444443 2345678889999999999999999999999864 4578889999999999999999999999
Q ss_pred HHHhCCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCc-----------HhHHHHHHHHHHhcChhhHHHHHH
Q 044770 155 QMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPN-----------EVSYCILATAHAVARLYTVAETYV 223 (464)
Q Consensus 155 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~-----------~~~~~~li~~~~~~~~~~~a~~~~ 223 (464)
++.+.. +.+..++..+...|...|++++|...|+++.+.. |+ ...+..+...+...|++++|...+
T Consensus 124 ~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 200 (365)
T 4eqf_A 124 RCLELQ-PNNLKALMALAVSYTNTSHQQDACEALKNWIKQN--PKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELY 200 (365)
T ss_dssp HHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--HHHHCC-------------------CCHHHHHHHHHH
T ss_pred HHHhcC-CCCHHHHHHHHHHHHccccHHHHHHHHHHHHHhC--ccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHH
Confidence 998864 5567889999999999999999999999988652 32 122334577888999999999999
Q ss_pred HHHHhccCC-CChhhHHHHHHHHHhhcChhhHHHHHHHhccCCCCchhhHHHHHHHhhccCChHHHHHHHHHHHhccccC
Q 044770 224 EALEKSMTG-NNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLK 302 (464)
Q Consensus 224 ~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 302 (464)
+++.+.... ++..++..+...+...|++++|...++......+.+..++..+...|...|++++|...|+++.+.. +.
T Consensus 201 ~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~ 279 (365)
T 4eqf_A 201 LEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQ-PG 279 (365)
T ss_dssp HHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TT
T ss_pred HHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CC
Confidence 999886432 1678899999999999999999999999988777778889999999999999999999999998843 34
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCC---c--------cHHHHHHHHHHHHhcCChHHHHHHHHHh
Q 044770 303 ATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCK---P--------NAITYRHLALGCFKSNLVEEGFKALELG 365 (464)
Q Consensus 303 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~---p--------~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 365 (464)
+..+|..+..+|...|++++|...|+++.+.... | +...|..+..++...|+.+.+..+....
T Consensus 280 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 353 (365)
T 4eqf_A 280 FIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLGD 353 (365)
T ss_dssp CHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTTC
T ss_pred chHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHhh
Confidence 5788999999999999999999999998863211 0 2567888999999999999988877664
No 20
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.84 E-value=2.5e-19 Score=162.81 Aligned_cols=291 Identities=10% Similarity=-0.007 Sum_probs=230.6
Q ss_pred HHhhcchHHHHH-HHHHHHHcCCCCC--CchhHHHHHHHHHhhcChHHHHHHhhhcCCC-CCchhHHHHHHHHHHhhCcH
Q 044770 36 LRKLQLNKRALE-VMEWVIRERPYRP--KELDYSYLLEFTIKNHGISQGEKLFCCIPKD-YQNELLYNNLVIACLDKGVI 111 (464)
Q Consensus 36 ~~~~~~~~~A~~-~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~li~~~~~~~~~ 111 (464)
+.-.|++++|++ .++...+..+-.| +...+..+...+...|++++|...|+++... +.+..+|..+...+...|++
T Consensus 35 ~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~ 114 (368)
T 1fch_A 35 HPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQE 114 (368)
T ss_dssp -----------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCH
T ss_pred hHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCH
Confidence 334578888888 8776654322222 3566888999999999999999999998776 44678899999999999999
Q ss_pred HHHHHHHHHHHHcCCCCchhhHHHHHHHhcCCCCcccHHHHHHHHHhCCCCCChhhHHH---------------HHHHHH
Q 044770 112 KLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHI---------------LMKIEA 176 (464)
Q Consensus 112 ~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~---------------l~~~~~ 176 (464)
++|+..|+++.+.+ +.+..++..+...+...|++++|...++++.+.. +.+...+.. .+..+.
T Consensus 115 ~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (368)
T 1fch_A 115 LLAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYT-PAYAHLVTPAEEGAGGAGLGPSKRILGSLL 192 (368)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-TTTGGGCC---------------CTTHHHH
T ss_pred HHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHhhhhcccHHHHHHHHHh
Confidence 99999999999875 4578889999999999999999999999998864 223333321 233344
Q ss_pred ccCChhHHHHHHHHHHhCCCC-CcHhHHHHHHHHHHhcChhhHHHHHHHHHHhccCCCChhhHHHHHHHHHhhcChhhHH
Q 044770 177 NDHNIEGLMKVYSDMKRSEVE-PNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLE 255 (464)
Q Consensus 177 ~~~~~~~a~~~~~~m~~~~~~-p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 255 (464)
..|++++|...|+++.+.... ++..++..+...+.+.|++++|...++++... .+.+..++..+..++...|++++|.
T Consensus 193 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-~~~~~~~~~~l~~~~~~~g~~~~A~ 271 (368)
T 1fch_A 193 SDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV-RPNDYLLWNKLGATLANGNQSEEAV 271 (368)
T ss_dssp HHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred hcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CcCCHHHHHHHHHHHHHcCCHHHHH
Confidence 899999999999999876322 14788999999999999999999999999876 3446788999999999999999999
Q ss_pred HHHHHhccCCCCchhhHHHHHHHhhccCChHHHHHHHHHHHhccccC----------ChhhHHHHHHHHHhcCChhHHHH
Q 044770 256 RIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLK----------ATEQYNSVISVYCKNGFIDKASG 325 (464)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~----------~~~~~~~li~~~~~~~~~~~a~~ 325 (464)
..++.+....+.+...+..+...|.+.|++++|...|+.+.+..... ...+|..+..+|...|++++|..
T Consensus 272 ~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 351 (368)
T 1fch_A 272 AAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGA 351 (368)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHH
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHH
Confidence 99999988777778889999999999999999999999988743221 15789999999999999999998
Q ss_pred HHHH
Q 044770 326 LLKE 329 (464)
Q Consensus 326 ~~~~ 329 (464)
++++
T Consensus 352 ~~~~ 355 (368)
T 1fch_A 352 ADAR 355 (368)
T ss_dssp HHTT
T ss_pred hHHH
Confidence 8764
No 21
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.84 E-value=1.1e-19 Score=161.85 Aligned_cols=348 Identities=9% Similarity=0.006 Sum_probs=169.2
Q ss_pred CCCcchhhHHHHhhcCccChhchHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCCchhHHHHHHHHHhhcChHHHHHHhh
Q 044770 7 GEPVGSAFQSWMREGFPVHRGEIFHSINRLRKLQLNKRALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQGEKLFC 86 (464)
Q Consensus 7 ~~~~~~~l~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 86 (464)
-+++.+.++++ +++..+..+..++.+.|++++|++.|... +|..+|..++..+...|++++|..+++
T Consensus 19 ld~A~~fae~~------~~~~vWs~La~A~l~~g~~~eAIdsfika-------~D~~~y~~V~~~ae~~g~~EeAi~yl~ 85 (449)
T 1b89_A 19 LDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEAIDSYIKA-------DDPSSYMEVVQAANTSGNWEELVKYLQ 85 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHhC------CChHHHHHHHHHHHHcCCHHHHHHHHHcC-------CCHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 34444444444 44568999999999999999999999642 467789999999999999999999888
Q ss_pred hcCCCCCchhHHHHHHHHHHhhCcHHHHHHHHHHHHHcCCCCchhhHHHHHHHhcCCCCcccHHHHHHHHHhCCCCCChh
Q 044770 87 CIPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVS 166 (464)
Q Consensus 87 ~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 166 (464)
...+..+++.+.+.++.+|.+.|+++++.++++ .|+..+|..+...|...|.+++|...|..+ .
T Consensus 86 ~ark~~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~ 149 (449)
T 1b89_A 86 MARKKARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------S 149 (449)
T ss_dssp -----------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT---------T
T ss_pred HHHHhCccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------h
Confidence 887765667889999999999999999988884 367789999999999999999999999977 4
Q ss_pred hHHHHHHHHHccCChhHHHHHHHHHHhCCCCCcHhHHHHHHHHHHhcChhhHHHHHHHHHHhccCCCChhhHHHHHHHHH
Q 044770 167 TFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYG 246 (464)
Q Consensus 167 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 246 (464)
.|..++.++.+.|++++|.+.++++ .++.+|..++.+|...|+++.|...... +...+.-...++..|.
T Consensus 150 n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~-----L~~~ad~l~~lv~~Ye 218 (449)
T 1b89_A 150 NFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLH-----IVVHADELEELINYYQ 218 (449)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTT-----TTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHH-----HHhCHhhHHHHHHHHH
Confidence 7999999999999999999999988 2789999999999999999999655443 2233444557889999
Q ss_pred hhcChhhHHHHHHHhccCCCCchhhHHHHHHHhhcc--CChHHHHHHHHHHHhccccC------ChhhHHHHHHHHHhcC
Q 044770 247 YLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRI--AQVSRAEELWLEMQSVKQLK------ATEQYNSVISVYCKNG 318 (464)
Q Consensus 247 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~--g~~~~a~~~~~~~~~~~~~~------~~~~~~~li~~~~~~~ 318 (464)
+.|.++++..+++......+.....|+-+..+|++- ++..+..+.|.. ..+++| +...|..++..|...+
T Consensus 219 k~G~~eEai~lLe~aL~le~ah~~~ftel~il~~ky~p~k~~ehl~~~~~--~ini~k~~~~~~~~~~w~e~~~ly~~~~ 296 (449)
T 1b89_A 219 DRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWS--RVNIPKVLRAAEQAHLWAELVFLYDKYE 296 (449)
T ss_dssp HTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHST--TSCHHHHHHHHHTTTCHHHHHHHHHHTT
T ss_pred HCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--HhcCcHHHHHHHHHHHHHHHHHHHHhhc
Confidence 999999999999998887777778888887777763 445555555542 112333 4668999999999999
Q ss_pred ChhHHHHHHHHHHhCC-----------CCccHHHHHHHHHHHHhcCChHHHHHHHHHhHHHHhhhhhcCCCCcHHHHHHH
Q 044770 319 FIDKASGLLKEMSMNG-----------CKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSI 387 (464)
Q Consensus 319 ~~~~a~~~~~~m~~~g-----------~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~p~~~~~~~l 387 (464)
+++.|....-+-...- -..+...|...+.-|. +....++.-+-.. ....+.+ +..
T Consensus 297 e~d~A~~tm~~h~~~a~~~~~f~~~~~kv~n~elyYkai~fyl--~~~p~~l~~ll~~-------l~~~ld~-----~r~ 362 (449)
T 1b89_A 297 EYDNAIITMMNHPTDAWKEGQFKDIITKVANVELYYRAIQFYL--EFKPLLLNDLLMV-------LSPRLDH-----TRA 362 (449)
T ss_dssp CHHHHHHHHHHSTTTTCCHHHHHHHHHHCSSTHHHHHHHHHHH--HHCGGGHHHHHHH-------HGGGCCH-----HHH
T ss_pred hHHHHHHHHHhCChhhhhhHHHHHHHhchhHHHHHHHHHHHHH--hcCHHHHHHHHHH-------HHhccCc-----HHH
Confidence 9998876433211100 1123445555555554 2222222222222 1122333 255
Q ss_pred HHHHHhcCChhhHHHHHHHHHHc
Q 044770 388 IEIFAEKGDVGNAENLFEELKKA 410 (464)
Q Consensus 388 i~~~~~~g~~~~A~~~~~~m~~~ 410 (464)
+..+.+.|++.-+...++.....
T Consensus 363 v~~~~~~~~l~l~~~yl~~v~~~ 385 (449)
T 1b89_A 363 VNYFSKVKQLPLVKPYLRSVQNH 385 (449)
T ss_dssp HHHHHHTTCTTTTHHHHHHHHTT
T ss_pred HHHHHHcCCcHHHHHHHHHHHHh
Confidence 67777888888888888777764
No 22
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.84 E-value=1.5e-16 Score=150.17 Aligned_cols=355 Identities=10% Similarity=-0.018 Sum_probs=287.3
Q ss_pred ccChhchHHHHHHHHh----hcchHHHHHHHHHHHHcCCCCCCchhHHHHHHHHHh----hcChHHHHHHhhhcCCCCCc
Q 044770 23 PVHRGEIFHSINRLRK----LQLNKRALEVMEWVIRERPYRPKELDYSYLLEFTIK----NHGISQGEKLFCCIPKDYQN 94 (464)
Q Consensus 23 ~~~~~~~~~~l~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~ 94 (464)
+.++.....+...+.. .+++++|.+.|+...+. .+...+..|...|.. .++.++|...|++.... .+
T Consensus 36 ~g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~----~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~-~~ 110 (490)
T 2xm6_A 36 SGEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQ----GYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALK-GL 110 (490)
T ss_dssp TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-TC
T ss_pred CCCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC-CC
Confidence 3456777777777877 89999999999999873 356788888888888 89999999999987664 36
Q ss_pred hhHHHHHHHHHHh----hCcHHHHHHHHHHHHHcCCCCchhhHHHHHHHhcC----CCCcccHHHHHHHHHhCCCCCChh
Q 044770 95 ELLYNNLVIACLD----KGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSS----PGRRKTIPNILRQMKADKVAPHVS 166 (464)
Q Consensus 95 ~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~ 166 (464)
...+..|...|.. .+++++|+..|++..+.| +...+..|...|.. .++.++|.+.|++..+.| +..
T Consensus 111 ~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~ 184 (490)
T 2xm6_A 111 PQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVW 184 (490)
T ss_dssp HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHH
T ss_pred HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHH
Confidence 6777788888888 789999999999998876 56677777777765 788999999999998864 677
Q ss_pred hHHHHHHHHHc----cCChhHHHHHHHHHHhCCCCCcHhHHHHHHHHHHh----cChhhHHHHHHHHHHhccCCCChhhH
Q 044770 167 TFHILMKIEAN----DHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAV----ARLYTVAETYVEALEKSMTGNNWSTL 238 (464)
Q Consensus 167 ~~~~l~~~~~~----~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~ 238 (464)
.+..+...|.. .+++++|...|++..+.| +...+..+...|.. .+++++|..+|++..+.+ +...+
T Consensus 185 a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~ 258 (490)
T 2xm6_A 185 SCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQ 258 (490)
T ss_dssp HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHH
T ss_pred HHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHH
Confidence 78888888887 899999999999988764 55677777777776 789999999999988764 45566
Q ss_pred HHHHHHHHh----hcChhhHHHHHHHhccCCCCchhhHHHHHHHhhcc-----CChHHHHHHHHHHHhccccCChhhHHH
Q 044770 239 DVLIILYGY----LAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRI-----AQVSRAEELWLEMQSVKQLKATEQYNS 309 (464)
Q Consensus 239 ~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----g~~~~a~~~~~~~~~~~~~~~~~~~~~ 309 (464)
..+...+.. .++.++|...++...+... ...+..+...|... +++++|...|++..+.+ +...+..
T Consensus 259 ~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~~--~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~ 333 (490)
T 2xm6_A 259 FRLGYILEQGLAGAKEPLKALEWYRKSAEQGN--SDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQAN 333 (490)
T ss_dssp HHHHHHHHHTTTSSCCHHHHHHHHHHHHTTTC--HHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHH
T ss_pred HHHHHHHHCCCCCCCCHHHHHHHHHHHHHcCC--HHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHH
Confidence 677777777 7899999999998876543 34577778888776 89999999999998864 4457777
Q ss_pred HHHHHHhcC---ChhHHHHHHHHHHhCCCCccHHHHHHHHHHHHh----cCChHHHHHHHHHhHHHHhhhhhcCCCCcHH
Q 044770 310 VISVYCKNG---FIDKASGLLKEMSMNGCKPNAITYRHLALGCFK----SNLVEEGFKALELGMKLITTKKVRSSTPWLE 382 (464)
Q Consensus 310 li~~~~~~~---~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~p~~~ 382 (464)
+...|...| ++++|+.+|++..+.| +...+..+...|.. .+++++|...|+.+. ..+ +..
T Consensus 334 lg~~y~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~-------~~~---~~~ 400 (490)
T 2xm6_A 334 LGAIYFRLGSEEEHKKAVEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAA-------EQG---LSA 400 (490)
T ss_dssp HHHHHHHSCCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHH-------HTT---CHH
T ss_pred HHHHHHhCCCcccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-------hCC---CHH
Confidence 888887766 7899999999999864 56777788888887 789999999999984 333 456
Q ss_pred HHHHHHHHHHh----cCChhhHHHHHHHHHHcCC
Q 044770 383 TTLSIIEIFAE----KGDVGNAENLFEELKKANY 412 (464)
Q Consensus 383 ~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~ 412 (464)
.+..|...|.+ .++.++|...|++..+.+.
T Consensus 401 a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~ 434 (490)
T 2xm6_A 401 AQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDM 434 (490)
T ss_dssp HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCC
Confidence 67788888888 8999999999999998774
No 23
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.81 E-value=5.5e-20 Score=176.66 Aligned_cols=118 Identities=14% Similarity=0.094 Sum_probs=71.9
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHh---CCCCccHHHHHHHHHHHHhcCChHHHHHHHHHhHHHHhhhhhcCCCCcH
Q 044770 305 EQYNSVISVYCKNGFIDKASGLLKEMSM---NGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWL 381 (464)
Q Consensus 305 ~~~~~li~~~~~~~~~~~a~~~~~~m~~---~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~p~~ 381 (464)
.+||++|++||+.|++++|.++|.+|.+ .|+.||..|||+||.+|++.|++++|.++|++| ...|+.||.
T Consensus 128 ~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM-------~~~G~~PDv 200 (1134)
T 3spa_A 128 QRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMV-------KDAGLTPDL 200 (1134)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHH-------HHTTCCCCH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHH-------HHcCCCCcH
Confidence 3566666666666666666666655542 355666666666666666666666666666666 556666666
Q ss_pred HHHHHHHHHHHhcCCh-hhHHHHHHHHHHcCCCCcHHHHHHHHHHHHHc
Q 044770 382 ETTLSIIEIFAEKGDV-GNAENLFEELKKANYTKYTFVYNTLIKAYVKA 429 (464)
Q Consensus 382 ~~~~~li~~~~~~g~~-~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 429 (464)
.|||+||+++++.|+. ++|.++|++|.+.|+.||..+|++++.++.+.
T Consensus 201 vTYntLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~ 249 (1134)
T 3spa_A 201 LSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRA 249 (1134)
T ss_dssp HHHHHHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHH
Confidence 6666666666666653 45566666666666666666666555544443
No 24
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.81 E-value=2.5e-18 Score=156.09 Aligned_cols=274 Identities=7% Similarity=-0.068 Sum_probs=219.0
Q ss_pred chhhHHHHHHHhcCCCCcccHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCcHhHHHHHHH
Q 044770 129 SYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILAT 208 (464)
Q Consensus 129 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~ 208 (464)
+...+..+...+.+.|++++|...|+++.+.. +.+..+|..+...+...|++++|...|++..+.. +.+..+|..+..
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 141 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAV 141 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Confidence 45568888999999999999999999999865 6678899999999999999999999999998764 335788999999
Q ss_pred HHHhcChhhHHHHHHHHHHhccCCC---------ChhhHHHHHHHHHhhcChhhHHHHHHHhccCCCC--chhhHHHHHH
Q 044770 209 AHAVARLYTVAETYVEALEKSMTGN---------NWSTLDVLIILYGYLAKGKDLERIWATVQELPNV--RSKSYVLAIE 277 (464)
Q Consensus 209 ~~~~~~~~~~a~~~~~~~~~~~~~~---------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~l~~ 277 (464)
++...|++++|...++++.+..... ....+..+...+...|++++|...++.+....+. +..++..+..
T Consensus 142 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~ 221 (365)
T 4eqf_A 142 SYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGV 221 (365)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHH
T ss_pred HHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHH
Confidence 9999999999999999997753110 1223344578899999999999999999885555 7778999999
Q ss_pred HhhccCChHHHHHHHHHHHhccccCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCccHHHHHHHHHHHHhcCChHH
Q 044770 278 AFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEE 357 (464)
Q Consensus 278 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~ 357 (464)
.|...|++++|...|++..+. .+.+..+|..+..+|...|++++|+..|+++.+.. +.+..++..+...+...|++++
T Consensus 222 ~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~ 299 (365)
T 4eqf_A 222 LFHLSGEFNRAIDAFNAALTV-RPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQ-PGFIRSRYNLGISCINLGAYRE 299 (365)
T ss_dssp HHHHHTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHH
T ss_pred HHHHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHHH
Confidence 999999999999999999884 34468899999999999999999999999999853 2247889999999999999999
Q ss_pred HHHHHHHhHHHHhhhhhcCC----CCcHHHHHHHHHHHHhcCChhhHHHHHHH
Q 044770 358 GFKALELGMKLITTKKVRSS----TPWLETTLSIIEIFAEKGDVGNAENLFEE 406 (464)
Q Consensus 358 a~~~~~~~~~~~~~~~~~~~----~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 406 (464)
|...++.++++.+....... ..+...|..+..++...|+.+.+..+.++
T Consensus 300 A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 300 AVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 99999999876543111111 11356788999999999999988887654
No 25
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.81 E-value=1.5e-15 Score=143.34 Aligned_cols=364 Identities=10% Similarity=-0.003 Sum_probs=294.4
Q ss_pred HHHHHHHHHHcCCCCCCchhHHHHHHHHHh----hcChHHHHHHhhhcCCCCCchhHHHHHHHHHHh----hCcHHHHHH
Q 044770 45 ALEVMEWVIRERPYRPKELDYSYLLEFTIK----NHGISQGEKLFCCIPKDYQNELLYNNLVIACLD----KGVIKLSLE 116 (464)
Q Consensus 45 A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~ 116 (464)
+.+.++...+ ..+...+..+...|.. .+++++|...|++..+. .+...+..|...|.. .+++++|+.
T Consensus 26 ~~~~~~~~a~----~g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~-~~~~a~~~Lg~~y~~g~g~~~~~~~A~~ 100 (490)
T 2xm6_A 26 NLEQLKQKAE----SGEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQ-GYTPAEYVLGLRYMNGEGVPQDYAQAVI 100 (490)
T ss_dssp CHHHHHHHHH----TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHTSSSCCCHHHHHH
T ss_pred HHHHHHHHHH----CCCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHC-CCHHHHHHHHHHHHcCCCCCCCHHHHHH
Confidence 3455555544 2366777888888887 89999999999987664 467788889999998 899999999
Q ss_pred HHHHHHHcCCCCchhhHHHHHHHhcC----CCCcccHHHHHHHHHhCCCCCChhhHHHHHHHHHc----cCChhHHHHHH
Q 044770 117 YMKKMRVLGHSISYLVFNRLIILNSS----PGRRKTIPNILRQMKADKVAPHVSTFHILMKIEAN----DHNIEGLMKVY 188 (464)
Q Consensus 117 ~~~~m~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~ 188 (464)
.|++..+.| +...+..|...|.. .+++++|...|+...+.| +...+..|...|.. .+++++|.+.|
T Consensus 101 ~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~ 174 (490)
T 2xm6_A 101 WYKKAALKG---LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWY 174 (490)
T ss_dssp HHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHH
T ss_pred HHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHH
Confidence 999998876 56677778777777 789999999999998865 56677778888887 78999999999
Q ss_pred HHHHhCCCCCcHhHHHHHHHHHHh----cChhhHHHHHHHHHHhccCCCChhhHHHHHHHHHh----hcChhhHHHHHHH
Q 044770 189 SDMKRSEVEPNEVSYCILATAHAV----ARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGY----LAKGKDLERIWAT 260 (464)
Q Consensus 189 ~~m~~~~~~p~~~~~~~li~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~ 260 (464)
++..+.| +...+..+...|.. .+++++|..+|++..+.+ +...+..+...|.. .++.++|..+++.
T Consensus 175 ~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~ 248 (490)
T 2xm6_A 175 SKAAEQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQ 248 (490)
T ss_dssp HHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHH
T ss_pred HHHHHCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHH
Confidence 9998864 67788888888887 899999999999998764 45677778777776 7899999999998
Q ss_pred hccCCCCchhhHHHHHHHhhc----cCChHHHHHHHHHHHhccccCChhhHHHHHHHHHhc-----CChhHHHHHHHHHH
Q 044770 261 VQELPNVRSKSYVLAIEAFGR----IAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKN-----GFIDKASGLLKEMS 331 (464)
Q Consensus 261 ~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-----~~~~~a~~~~~~m~ 331 (464)
...... ...+..+...|.. .+++++|...|++..+.+ +...+..+...|... +++++|+..|++..
T Consensus 249 a~~~~~--~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~ 323 (490)
T 2xm6_A 249 SAEQGN--SIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSA 323 (490)
T ss_dssp HHTTTC--HHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHH
T ss_pred HHHCCC--HHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHH
Confidence 877543 3456677777776 899999999999998764 455777888888887 89999999999999
Q ss_pred hCCCCccHHHHHHHHHHHHhcC---ChHHHHHHHHHhHHHHhhhhhcCCCCcHHHHHHHHHHHHh----cCChhhHHHHH
Q 044770 332 MNGCKPNAITYRHLALGCFKSN---LVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAE----KGDVGNAENLF 404 (464)
Q Consensus 332 ~~g~~p~~~~~~~ll~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~ 404 (464)
+.| +...+..+...+...| +.++|...|+.+. .. .+...+..|...|.. .+++++|...|
T Consensus 324 ~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~-------~~---~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~ 390 (490)
T 2xm6_A 324 EQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAA-------AK---GEKAAQFNLGNALLQGKGVKKDEQQAAIWM 390 (490)
T ss_dssp HTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHH-------HT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHH
T ss_pred hcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHH-------HC---CCHHHHHHHHHHHHcCCCCCCCHHHHHHHH
Confidence 875 4456667777776656 8899999999984 33 356677888999988 89999999999
Q ss_pred HHHHHcCCCCcHHHHHHHHHHHHH----cCCC--hhHHHHHHHhCCCC
Q 044770 405 EELKKANYTKYTFVYNTLIKAYVK----AKIN--DPNLLRRMILGGAR 446 (464)
Q Consensus 405 ~~m~~~~~~p~~~~~~~li~~~~~----~g~~--a~~~~~~m~~~~~~ 446 (464)
++..+.| +...+..+-..|.+ .++. |..+|++..+.|..
T Consensus 391 ~~A~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~ 435 (490)
T 2xm6_A 391 RKAAEQG---LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMN 435 (490)
T ss_dssp HHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCC
T ss_pred HHHHhCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCC
Confidence 9999875 46678888888887 5553 89999999887744
No 26
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.80 E-value=1e-19 Score=174.76 Aligned_cols=121 Identities=12% Similarity=0.087 Sum_probs=108.9
Q ss_pred CCccHHHHHHHHHHHHhcCChHHHHHHHHHhHHHHhhhhhcCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCC
Q 044770 335 CKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTK 414 (464)
Q Consensus 335 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p 414 (464)
..--..||+++|.+|++.|++++|..+|+.|.+. ...|+.||..|||+||++||+.|++++|.++|++|.+.|+.|
T Consensus 123 ~~~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m----~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~P 198 (1134)
T 3spa_A 123 LSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQ----RQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTP 198 (1134)
T ss_dssp CCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHS----HHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCC
T ss_pred HHhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH----hhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC
Confidence 3445679999999999999999999999988422 346899999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHHcCCC---hhHHHHHHHhCCCCCCHHHHHHHHHHH
Q 044770 415 YTFVYNTLIKAYVKAKIN---DPNLLRRMILGGARPDAETYSLLKLAE 459 (464)
Q Consensus 415 ~~~~~~~li~~~~~~g~~---a~~~~~~m~~~~~~p~~~t~~~L~~~~ 459 (464)
|.+|||++|.++++.|+. |.++|++|.+.|+.||.+||++++..+
T Consensus 199 DvvTYntLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~ 246 (1134)
T 3spa_A 199 DLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEE 246 (1134)
T ss_dssp CHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHH
T ss_pred cHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChh
Confidence 999999999999999973 789999999999999999999655443
No 27
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.80 E-value=1.3e-17 Score=148.76 Aligned_cols=269 Identities=9% Similarity=-0.034 Sum_probs=187.5
Q ss_pred hHHHHHHHHHHhhCcHHHHHHHHHHHHHcCCCCchhhHHHHHHHhcCCCCcccHHHHHHHHHhCCCCCChhhHHHHHHHH
Q 044770 96 LLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIE 175 (464)
Q Consensus 96 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 175 (464)
..|..+...+...|++++|+.+|+++.+.. +.+..++..+...+...|++++|...++++.+.. +.+..++..+...+
T Consensus 22 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~ 99 (327)
T 3cv0_A 22 ENPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSH 99 (327)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHH
Confidence 345555556666666666666666666543 2345556666666666666666666666665543 34555666666666
Q ss_pred HccCChhHHHHHHHHHHhCCCCCcHhHHHHH--------------HH-HHHhcChhhHHHHHHHHHHhccCCCChhhHHH
Q 044770 176 ANDHNIEGLMKVYSDMKRSEVEPNEVSYCIL--------------AT-AHAVARLYTVAETYVEALEKSMTGNNWSTLDV 240 (464)
Q Consensus 176 ~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l--------------i~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 240 (464)
...|++++|...++++.+.... +...+..+ .. .+...|++++|...++++.+.. +.+..++..
T Consensus 100 ~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~ 177 (327)
T 3cv0_A 100 TNEHNANAALASLRAWLLSQPQ-YEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQLHAS 177 (327)
T ss_dssp HHTTCHHHHHHHHHHHHHTSTT-TTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCc-cHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHHHHH
Confidence 6666666666666666654211 12222222 22 2667788888888888887653 346677778
Q ss_pred HHHHHHhhcChhhHHHHHHHhccCCCCchhhHHHHHHHhhccCChHHHHHHHHHHHhccccCChhhHHHHHHHHHhcCCh
Q 044770 241 LIILYGYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFI 320 (464)
Q Consensus 241 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~ 320 (464)
+...+...|++++|...++.+....+.+...+..+...+...|++++|...|+++.+.. +.+...|..+...+...|++
T Consensus 178 la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~g~~ 256 (327)
T 3cv0_A 178 LGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDIN-PGYVRVMYNMAVSYSNMSQY 256 (327)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhccH
Confidence 88888888888888888888777666667778888999999999999999999988743 34677888999999999999
Q ss_pred hHHHHHHHHHHhCCCCc-----------cHHHHHHHHHHHHhcCChHHHHHHHHHhHHHH
Q 044770 321 DKASGLLKEMSMNGCKP-----------NAITYRHLALGCFKSNLVEEGFKALELGMKLI 369 (464)
Q Consensus 321 ~~a~~~~~~m~~~g~~p-----------~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 369 (464)
++|...++++.+..... +...+..+..++...|++++|..+++.+++..
T Consensus 257 ~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~ 316 (327)
T 3cv0_A 257 DLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNVEPF 316 (327)
T ss_dssp HHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCSHHH
T ss_pred HHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhc
Confidence 99999999988743221 46788888899999999999999998775543
No 28
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.79 E-value=8.4e-19 Score=156.13 Aligned_cols=239 Identities=12% Similarity=0.078 Sum_probs=60.8
Q ss_pred hhcchHHHHHHHHHHHHcCCCCCCchhHHHHHHHHHhhcChHHHHHHhhhcCCCCCchhHHHHHHHHHHhhCcHHHHHHH
Q 044770 38 KLQLNKRALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQGEKLFCCIPKDYQNELLYNNLVIACLDKGVIKLSLEY 117 (464)
Q Consensus 38 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~ 117 (464)
+.|++++|.++++.+. ++.+|..++.++.+.|++++|.+.|.+. ++...|..++.++...|++++|+..
T Consensus 15 ~~~~ld~A~~fae~~~-------~~~vWs~La~A~l~~g~~~eAIdsfika----~D~~~y~~V~~~ae~~g~~EeAi~y 83 (449)
T 1b89_A 15 HIGNLDRAYEFAERCN-------EPAVWSQLAKAQLQKGMVKEAIDSYIKA----DDPSSYMEVVQAANTSGNWEELVKY 83 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCC-------ChHHHHHHHHHHHHcCCHHHHHHHHHcC----CCHHHHHHHHHHHHhCCCHHHHHHH
Confidence 3444555555555541 1125555555555555555555555432 2444555555555555555555554
Q ss_pred HHHHHHcCCCCchhhHHHHHHHhcCCCCcccHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCC
Q 044770 118 MKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVE 197 (464)
Q Consensus 118 ~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~ 197 (464)
++..++. .+++.+.+.++.+|.+.|+++++.++++ .|+..+|+.+...|...|.+++|..+|..+
T Consensus 84 l~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a------ 148 (449)
T 1b89_A 84 LQMARKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV------ 148 (449)
T ss_dssp ---------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT------
T ss_pred HHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh------
Confidence 4444332 2334455555555555555555554442 244445555555555555555555555544
Q ss_pred CcHhHHHHHHHHHHhcChhhHHHHHHHHHHhccCCCChhhHHHHHHHHHhhcChhhHHHHHHHhccCCCCchhhHHHHHH
Q 044770 198 PNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSKSYVLAIE 277 (464)
Q Consensus 198 p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 277 (464)
..|..++.++.+.|++++|.+.++++ .++.+|..++.+|...|+++.|......+. ..+.....++.
T Consensus 149 ---~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~----~~ad~l~~lv~ 215 (449)
T 1b89_A 149 ---SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV----VHADELEELIN 215 (449)
T ss_dssp ---TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT----TCHHHHHHHHH
T ss_pred ---hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH----hCHhhHHHHHH
Confidence 24555555555555555555555554 134555555555555555555533222211 11122333445
Q ss_pred HhhccCChHHHHHHHHHHHhccccCChhhHHHHHHHHHh
Q 044770 278 AFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCK 316 (464)
Q Consensus 278 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 316 (464)
.|.+.|++++|..+++...... +.....|+-+...|++
T Consensus 216 ~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~k 253 (449)
T 1b89_A 216 YYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSK 253 (449)
T ss_dssp HHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHT
T ss_pred HHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHh
Confidence 5555555555555555544322 2233344444444443
No 29
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.79 E-value=6.8e-18 Score=150.60 Aligned_cols=280 Identities=6% Similarity=-0.067 Sum_probs=179.5
Q ss_pred ChhchHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCCchhHHHHHHHHHhhcChHHHHHHhhhcCCC-CCchhHHHHHHH
Q 044770 25 HRGEIFHSINRLRKLQLNKRALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQGEKLFCCIPKD-YQNELLYNNLVI 103 (464)
Q Consensus 25 ~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~li~ 103 (464)
+...+......+...|++++|+.+|+.+.+.. +.+...+..+...+...|++++|...|+++... +.+..++..+..
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~ 97 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAA--PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAV 97 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHH
Confidence 55566777888888888888888888887743 345667777788888888888888888877665 335677778888
Q ss_pred HHHhhCcHHHHHHHHHHHHHcCCCCchhhHHHHHHHhcCCCCcccHHHHHHHHHhCCCCCChhhHHHH-HH-HHHccCCh
Q 044770 104 ACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHIL-MK-IEANDHNI 181 (464)
Q Consensus 104 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-~~-~~~~~~~~ 181 (464)
.+...|++++|++.++++.+.. +.+...+..+... .|+......+ .. .+...|++
T Consensus 98 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~ 154 (327)
T 3cv0_A 98 SHTNEHNANAALASLRAWLLSQ-PQYEQLGSVNLQA----------------------DVDIDDLNVQSEDFFFAAPNEY 154 (327)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTS-TTTTTC------------------------------------------CCTTSHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHhHH----------------------HHHHHHHHHHHHhHHHHHcccH
Confidence 8888888888888888887753 2222333222100 0111111111 11 24455566
Q ss_pred hHHHHHHHHHHhCCCCCcHhHHHHHHHHHHhcChhhHHHHHHHHHHhccCCCChhhHHHHHHHHHhhcChhhHHHHHHHh
Q 044770 182 EGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATV 261 (464)
Q Consensus 182 ~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 261 (464)
++|...++++.+.. +.+...+..+...+...|++++|...++++.+. .+.+..++..+...+...|++++|...++..
T Consensus 155 ~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 232 (327)
T 3cv0_A 155 RECRTLLHAALEMN-PNDAQLHASLGVLYNLSNNYDSAAANLRRAVEL-RPDDAQLWNKLGATLANGNRPQEALDAYNRA 232 (327)
T ss_dssp HHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 66666666655442 224555566666666666666666666666554 2234555666666666666666666666666
Q ss_pred ccCCCCchhhHHHHHHHhhccCChHHHHHHHHHHHhccccC-----------ChhhHHHHHHHHHhcCChhHHHHHHHHH
Q 044770 262 QELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLK-----------ATEQYNSVISVYCKNGFIDKASGLLKEM 330 (464)
Q Consensus 262 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-----------~~~~~~~li~~~~~~~~~~~a~~~~~~m 330 (464)
....+.+...+..+...|...|++++|.+.|++..+..... +...|..+..++...|++++|..++++.
T Consensus 233 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 312 (327)
T 3cv0_A 233 LDINPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQN 312 (327)
T ss_dssp HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCC
T ss_pred HHcCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 55445555667778888888888888888888877643221 4667888888999999999998887654
Q ss_pred H
Q 044770 331 S 331 (464)
Q Consensus 331 ~ 331 (464)
.
T Consensus 313 l 313 (327)
T 3cv0_A 313 V 313 (327)
T ss_dssp S
T ss_pred H
Confidence 3
No 30
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.79 E-value=1.3e-15 Score=145.36 Aligned_cols=379 Identities=9% Similarity=0.026 Sum_probs=270.7
Q ss_pred HHHHHHcCCCCCCchhHHHHHHHHHhhcChHHHHHHhhhcCCCCC-chhHHHHHHHHHHhhCcHHHHHHHHHHHHHcCCC
Q 044770 49 MEWVIRERPYRPKELDYSYLLEFTIKNHGISQGEKLFCCIPKDYQ-NELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHS 127 (464)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~ 127 (464)
++..++.. +-+...|..++.. ...|++++|..+|+++....| +...|..++..+.+.|++++|..+|++.....
T Consensus 2 le~al~~~--P~~~~~w~~l~~~-~~~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~-- 76 (530)
T 2ooe_A 2 AEKKLEEN--PYDLDAWSILIRE-AQNQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV-- 76 (530)
T ss_dssp HHHHHHHC--TTCHHHHHHHHHH-HHSSCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC--
T ss_pred hhhHhhhC--CCCHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--
Confidence 44444433 3467788888884 788999999999999988755 67889999999999999999999999999863
Q ss_pred CchhhHHHHHHHh-cCCCCcccHHH----HHHHHHh-CCCCC-ChhhHHHHHHHHHc---------cCChhHHHHHHHHH
Q 044770 128 ISYLVFNRLIILN-SSPGRRKTIPN----ILRQMKA-DKVAP-HVSTFHILMKIEAN---------DHNIEGLMKVYSDM 191 (464)
Q Consensus 128 ~~~~~~~~l~~~~-~~~~~~~~a~~----~~~~~~~-~~~~~-~~~~~~~l~~~~~~---------~~~~~~a~~~~~~m 191 (464)
|+...|..++... ...|+.+.|.+ +|+...+ .|..| +...|...+..... .|+++.|..+|++.
T Consensus 77 p~~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~a 156 (530)
T 2ooe_A 77 LHIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRG 156 (530)
T ss_dssp CCHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHH
Confidence 6777787777533 35677887765 7776654 35444 45677777776654 78999999999999
Q ss_pred HhCCCCCcHhHHHHHHHHH-------------HhcChhhHHHHHHHHHH------hcc---CCCCh--------hhHHHH
Q 044770 192 KRSEVEPNEVSYCILATAH-------------AVARLYTVAETYVEALE------KSM---TGNNW--------STLDVL 241 (464)
Q Consensus 192 ~~~~~~p~~~~~~~li~~~-------------~~~~~~~~a~~~~~~~~------~~~---~~~~~--------~~~~~l 241 (464)
.+....+....|....... .+.+++..|..+++... +.. ++|+. ..|...
T Consensus 157 l~~P~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~ 236 (530)
T 2ooe_A 157 CVNPMINIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKY 236 (530)
T ss_dssp TTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHH
T ss_pred HhchhhhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHH
Confidence 8731111123443322211 12456777777776632 111 23331 234443
Q ss_pred HHHHHhh----cCh----hhHHHHHHHhccCCCCchhhHHHHHHHhhc-------cCChH-------HHHHHHHHHHhcc
Q 044770 242 IILYGYL----AKG----KDLERIWATVQELPNVRSKSYVLAIEAFGR-------IAQVS-------RAEELWLEMQSVK 299 (464)
Q Consensus 242 ~~~~~~~----~~~----~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~g~~~-------~a~~~~~~~~~~~ 299 (464)
+...... ++. ..+..+++......+.+...|..++..+.+ .|+++ +|..+|++..+.-
T Consensus 237 ~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~ 316 (530)
T 2ooe_A 237 IQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTL 316 (530)
T ss_dssp HHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTT
T ss_pred HHHHHcCCccCCcchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHh
Confidence 3322221 122 366778888877666777888888888875 79987 8999999998732
Q ss_pred ccCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcc-H-HHHHHHHHHHHhcCChHHHHHHHHHhHHHHhhhhhcCC
Q 044770 300 QLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPN-A-ITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSS 377 (464)
Q Consensus 300 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 377 (464)
.+.+...|..++..+.+.|++++|..+|+++.+ +.|+ . ..|...+..+.+.|++++|..+|+.+++ .
T Consensus 317 ~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~---------~ 385 (530)
T 2ooe_A 317 LKKNMLLYFAYADYEESRMKYEKVHSIYNRLLA--IEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARE---------D 385 (530)
T ss_dssp CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--SSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT---------C
T ss_pred CcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhC--ccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHh---------c
Confidence 344678899999999999999999999999998 4554 2 4788888888899999999999999952 2
Q ss_pred CC-cHHHHHHHHHH-HHhcCChhhHHHHHHHHHHcCCCCcHHHHHHHHHHHHHcCCC--hhHHHHHHHhCC
Q 044770 378 TP-WLETTLSIIEI-FAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKIN--DPNLLRRMILGG 444 (464)
Q Consensus 378 ~p-~~~~~~~li~~-~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~--a~~~~~~m~~~~ 444 (464)
.| +...|...+.. +...|+.++|..+|++..+.. +.+...|..++..+.+.|+. |..+|++....+
T Consensus 386 ~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~-p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~ 455 (530)
T 2ooe_A 386 ARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSG 455 (530)
T ss_dssp TTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSC
T ss_pred cCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhcc
Confidence 22 22222222222 336899999999999988754 23567999999999999974 899999998864
No 31
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.78 E-value=6.5e-16 Score=145.30 Aligned_cols=379 Identities=8% Similarity=-0.157 Sum_probs=196.5
Q ss_pred hhchHHHHHHHHhhcchHHHHHHHHHHHHc----CC---CCCCchhHHHHHHHHHhhcChHHHHHHhhhcCCC-------
Q 044770 26 RGEIFHSINRLRKLQLNKRALEVMEWVIRE----RP---YRPKELDYSYLLEFTIKNHGISQGEKLFCCIPKD------- 91 (464)
Q Consensus 26 ~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~----~~---~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~------- 91 (464)
...++.+...+...|++++|++.|+...+. .+ .+....+|+.+..+|...|++++|...+++....
T Consensus 51 a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~ 130 (472)
T 4g1t_A 51 ATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSP 130 (472)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCS
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccc
Confidence 445666677777778888888887776541 11 1123356777777888888888887777654321
Q ss_pred -C-CchhHHHHHHHHHHhh--CcHHHHHHHHHHHHHcCCCCchhhHHHHHHH---hcCCCCcccHHHHHHHHHhCCCCCC
Q 044770 92 -Y-QNELLYNNLVIACLDK--GVIKLSLEYMKKMRVLGHSISYLVFNRLIIL---NSSPGRRKTIPNILRQMKADKVAPH 164 (464)
Q Consensus 92 -~-~~~~~~~~li~~~~~~--~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~---~~~~~~~~~a~~~~~~~~~~~~~~~ 164 (464)
. ....++.....++... +++++|+..|++..+.. +-+...+..+..+ +...++.++|++.+++..+.. +.+
T Consensus 131 ~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~-p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~-p~~ 208 (472)
T 4g1t_A 131 YRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK-PKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN-PDN 208 (472)
T ss_dssp SCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-SSC
T ss_pred cchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-Ccc
Confidence 1 1234555555444443 46788888888777753 2233444444333 334566777777777776643 344
Q ss_pred hhhHHHHHHHHHc----cCChhHHHHHHHHHHhCCCCCcHhHHHHHHHHHHhcChhhHHHHHHHHHHhccCCCChhhHHH
Q 044770 165 VSTFHILMKIEAN----DHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDV 240 (464)
Q Consensus 165 ~~~~~~l~~~~~~----~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 240 (464)
...+..+...+.. .+++++|.+++++..... +.+...+..+...+...|++++|...+++..+. .+.+..++..
T Consensus 209 ~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~-~p~~~~~~~~ 286 (472)
T 4g1t_A 209 QYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEY-IPNNAYLHCQ 286 (472)
T ss_dssp HHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-STTCHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHh-CCChHHHHHH
Confidence 4555544444433 456677888877766543 335566777777788888888888888877665 2334455555
Q ss_pred HHHHHHhhcChhhHHHHHHHhccCCCCchhhHHHHHHHhhccCChHHHHHHHHHHHhccccCChhhHHHHHHHHHhcCCh
Q 044770 241 LIILYGYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFI 320 (464)
Q Consensus 241 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~ 320 (464)
+..+|...+...... . ...........+..+.|...|+...+.. +.+...+..+...|...|++
T Consensus 287 lg~~y~~~~~~~~~~---------~------~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~~~~~ 350 (472)
T 4g1t_A 287 IGCCYRAKVFQVMNL---------R------ENGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASLHALADQY 350 (472)
T ss_dssp HHHHHHHHHHHHHHC---------------------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHhhhH---------H------HHHHHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHHHhccH
Confidence 554443221100000 0 0000000111223456666666666532 23455666677777777777
Q ss_pred hHHHHHHHHHHhCCCCccHH--HHHHHHH-HHHhcCChHHHHHHHHHhHHHHhhhhhcCCCCcHHHHHHHHHHHHhcCCh
Q 044770 321 DKASGLLKEMSMNGCKPNAI--TYRHLAL-GCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDV 397 (464)
Q Consensus 321 ~~a~~~~~~m~~~g~~p~~~--~~~~ll~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~ 397 (464)
++|...|++..+....|... .+..+.. .....|+.++|+..++++++ +.|+..... +..
T Consensus 351 ~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~---------i~~~~~~~~---------~~~ 412 (472)
T 4g1t_A 351 EEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVK---------INQKSREKE---------KMK 412 (472)
T ss_dssp HHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHH---------SCCCCHHHH---------HHH
T ss_pred HHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---------cCcccHHHH---------HHH
Confidence 77777777776643332221 1222221 23355677777777776642 223221111 112
Q ss_pred hhHHHHHHHHHHcCCCCcHHHHHHHHHHHHHcCCC--hhHHHHHHHhC
Q 044770 398 GNAENLFEELKKANYTKYTFVYNTLIKAYVKAKIN--DPNLLRRMILG 443 (464)
Q Consensus 398 ~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~--a~~~~~~m~~~ 443 (464)
..+.++++...+.. +.+..+|+.+-..|...|+. |++.|++..+.
T Consensus 413 ~~l~~~~~~~l~~~-p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~ 459 (472)
T 4g1t_A 413 DKLQKIAKMRLSKN-GADSEALHVLAFLQELNEKMQQADEDSERGLES 459 (472)
T ss_dssp HHHHHHHHHHHHHC-C-CTTHHHHHHHHHHHHHHCC------------
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 23344444444432 22344666666666666642 66666666554
No 32
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.78 E-value=1.3e-16 Score=138.97 Aligned_cols=246 Identities=11% Similarity=-0.018 Sum_probs=113.5
Q ss_pred hhcChHHHHHHhhhcCCCCCc--hhHHHHHHHHHHhhCcHHHHHHHHHHHHHcCCCCchhhHHHHHHHhcCCCCcccHHH
Q 044770 74 KNHGISQGEKLFCCIPKDYQN--ELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPN 151 (464)
Q Consensus 74 ~~g~~~~a~~~~~~~~~~~~~--~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 151 (464)
..|++..|+..++......|+ ......+.++|...|+++.|+..++. .-+|+..++..+...+...++.++|.+
T Consensus 11 ~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~~~~~A~~ 86 (291)
T 3mkr_A 11 YIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHSRRDAIVA 86 (291)
T ss_dssp HTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCSTTHHHHHH
T ss_pred HHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCCcHHHHHH
Confidence 344444444444443332222 12233334444444444444443322 123334444444444444444445555
Q ss_pred HHHHHHhCCCCC-ChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCcHhHHHHHHHHHHhcChhhHHHHHHHHHHhcc
Q 044770 152 ILRQMKADKVAP-HVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSM 230 (464)
Q Consensus 152 ~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 230 (464)
.++++...+..| +...+..+...+...|++++|++.+++ +.+...+..+...+.+.|++++|...++++.+..
T Consensus 87 ~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~ 160 (291)
T 3mkr_A 87 ELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKKMQDQD 160 (291)
T ss_dssp HHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC
Confidence 554444433222 223333333444455555555554443 2334444444445555555555555555544432
Q ss_pred CCCChhhH---HHHHHHHHhhcChhhHHHHHHHhccCCCCchhhHHHHHHHhhccCChHHHHHHHHHHHhccccCChhhH
Q 044770 231 TGNNWSTL---DVLIILYGYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQY 307 (464)
Q Consensus 231 ~~~~~~~~---~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 307 (464)
|+.... ...+..+...|++++|..+++.+....+.+...++.+..++.+.|++++|...|++..+. .+-+..++
T Consensus 161 --p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~-~p~~~~~l 237 (291)
T 3mkr_A 161 --EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDK-DSGHPETL 237 (291)
T ss_dssp --TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHH
T ss_pred --cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHH
Confidence 221100 011122222344555555555544444444445566666666666666666666666653 22355566
Q ss_pred HHHHHHHHhcCChhH-HHHHHHHHHh
Q 044770 308 NSVISVYCKNGFIDK-ASGLLKEMSM 332 (464)
Q Consensus 308 ~~li~~~~~~~~~~~-a~~~~~~m~~ 332 (464)
..++..+...|+.++ +.++++++.+
T Consensus 238 ~~l~~~~~~~g~~~eaa~~~~~~~~~ 263 (291)
T 3mkr_A 238 INLVVLSQHLGKPPEVTNRYLSQLKD 263 (291)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 666666666666654 4556666665
No 33
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.77 E-value=8.5e-17 Score=140.23 Aligned_cols=274 Identities=5% Similarity=-0.044 Sum_probs=217.4
Q ss_pred HHHHHhhcchHHHHHHHHHHHHcCCCCCCc--hhHHHHHHHHHhhcChHHHHHHhhhcCCCCCchhHHHHHHHHHHhhCc
Q 044770 33 INRLRKLQLNKRALEVMEWVIRERPYRPKE--LDYSYLLEFTIKNHGISQGEKLFCCIPKDYQNELLYNNLVIACLDKGV 110 (464)
Q Consensus 33 l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~li~~~~~~~~ 110 (464)
++.....|+++.|+..++.+.. ..|+. .....+...|...|+++.|...++.. ..|+..++..+...+...++
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~~~---~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~--~~~~~~a~~~la~~~~~~~~ 80 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRVKP---SSPERDVERDVFLYRAYLAQRKYGVVLDEIKPS--SAPELQAVRMFAEYLASHSR 80 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCC---CSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTT--SCHHHHHHHHHHHHHHCSTT
T ss_pred HHHHHHHHHHHHHHHHHHhccc---CCchhhHHHHHHHHHHHHHCCCHHHHHHHhccc--CChhHHHHHHHHHHHcCCCc
Confidence 4566678999999998876533 23443 34566788999999999999988764 34678889999999999999
Q ss_pred HHHHHHHHHHHHHcCCCC-chhhHHHHHHHhcCCCCcccHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhHHHHHHH
Q 044770 111 IKLSLEYMKKMRVLGHSI-SYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYS 189 (464)
Q Consensus 111 ~~~a~~~~~~m~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 189 (464)
.++|++.++++...+..| +...+..+...+...|++++|.+.+++ +.+...+..++..+.+.|++++|.+.|+
T Consensus 81 ~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~ 154 (291)
T 3mkr_A 81 RDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELK 154 (291)
T ss_dssp HHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 999999999999876545 455667777889999999999999987 5678889999999999999999999999
Q ss_pred HHHhCCCCCcHhHH---HHHHHHHHhcChhhHHHHHHHHHHhccCCCChhhHHHHHHHHHhhcChhhHHHHHHHhccCCC
Q 044770 190 DMKRSEVEPNEVSY---CILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPN 266 (464)
Q Consensus 190 ~m~~~~~~p~~~~~---~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 266 (464)
++.+. .|+.... ..++..+...|++++|..+|+++.+. .+.+...++.+..++...|++++|...++......+
T Consensus 155 ~~~~~--~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~-~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p 231 (291)
T 3mkr_A 155 KMQDQ--DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK-CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDS 231 (291)
T ss_dssp HHHHH--CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH-SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHhh--CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 99876 3554322 12233344569999999999999887 567888999999999999999999999999999888
Q ss_pred CchhhHHHHHHHhhccCChHH-HHHHHHHHHhccccCChhhHHHHHHHHHhcCChhHHHH
Q 044770 267 VRSKSYVLAIEAFGRIAQVSR-AEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASG 325 (464)
Q Consensus 267 ~~~~~~~~l~~~~~~~g~~~~-a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~ 325 (464)
.+..++..++..+...|+.++ +.++++++.+.. |+.. .+.+...+.+.++++..
T Consensus 232 ~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~--P~~~---~~~d~~~~~~~fd~~~~ 286 (291)
T 3mkr_A 232 GHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAH--RSHP---FIKEYRAKENDFDRLVL 286 (291)
T ss_dssp TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC--TTCH---HHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhC--CCCh---HHHHHHHHHHHHHHHHH
Confidence 888889999999999999976 678999988743 4321 23333444455555443
No 34
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.76 E-value=3.4e-15 Score=140.37 Aligned_cols=333 Identities=11% Similarity=-0.070 Sum_probs=185.6
Q ss_pred CCchhHHHHHHHHHhhcChHHHHHHhhhcCCC----------CCchhHHHHHHHHHHhhCcHHHHHHHHHHHHHcC----
Q 044770 60 PKELDYSYLLEFTIKNHGISQGEKLFCCIPKD----------YQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLG---- 125 (464)
Q Consensus 60 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----------~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~---- 125 (464)
.....|+.|...+...|+.++|++.|++..+. .....+|+.+...|...|++++|...+++..+..
T Consensus 49 ~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~ 128 (472)
T 4g1t_A 49 FKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFS 128 (472)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC
T ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcc
Confidence 34556777777888888888888777664221 1234567777778888888888887777665421
Q ss_pred --CCC-chhhHHHHHHHhc--CCCCcccHHHHHHHHHhCCCCCChhhHHHHHHH---HHccCChhHHHHHHHHHHhCCCC
Q 044770 126 --HSI-SYLVFNRLIILNS--SPGRRKTIPNILRQMKADKVAPHVSTFHILMKI---EANDHNIEGLMKVYSDMKRSEVE 197 (464)
Q Consensus 126 --~~~-~~~~~~~l~~~~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~~~~~~a~~~~~~m~~~~~~ 197 (464)
..+ ...++.....++. ..+++++|...|++..+.. +-+...+..+..+ +...++.++|++.|++..+.. +
T Consensus 129 ~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~-p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~-p 206 (472)
T 4g1t_A 129 SPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK-PKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN-P 206 (472)
T ss_dssp CSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-S
T ss_pred cccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-C
Confidence 011 1234444333332 3345667777777766542 2233333333333 233455666666666655442 2
Q ss_pred CcHhHHHHHHHHHHh----cChhhHHHHHHHHHHhccCCCChhhHHHHHHHHHhhcChhhHHHHHHHhccCCCCchhhHH
Q 044770 198 PNEVSYCILATAHAV----ARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSKSYV 273 (464)
Q Consensus 198 p~~~~~~~li~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 273 (464)
.+..++..+...+.. .+++++|...+++.... .+.+..++..+...+...|+++.|...++...+..+.+..++.
T Consensus 207 ~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~-~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 285 (472)
T 4g1t_A 207 DNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEK-APGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHC 285 (472)
T ss_dssp SCHHHHHHHHHHHHHCC------CHHHHHHHHHHHH-CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHH
T ss_pred cchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHh-CccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChHHHHH
Confidence 233444444333332 34556666666666554 2334455566666666666666666666666554444554555
Q ss_pred HHHHHhhccCChHHHHHHHHHHHhccccCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCccHHHHHHHHHHHHhcC
Q 044770 274 LAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSN 353 (464)
Q Consensus 274 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~ 353 (464)
.+...|...+....+. ............+..+.|...++...+.. +.+..++..+...+...|
T Consensus 286 ~lg~~y~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~~~ 348 (472)
T 4g1t_A 286 QIGCCYRAKVFQVMNL----------------RENGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASLHALAD 348 (472)
T ss_dssp HHHHHHHHHHHHHHHC----------------------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhhhH----------------HHHHHHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHHHhc
Confidence 5544442211100000 00000111112234678999999888743 224566778888999999
Q ss_pred ChHHHHHHHHHhHHHHhhhhhcCCCCcH--HHHHHHHH-HHHhcCChhhHHHHHHHHHHcCCCCcHHHHHH
Q 044770 354 LVEEGFKALELGMKLITTKKVRSSTPWL--ETTLSIIE-IFAEKGDVGNAENLFEELKKANYTKYTFVYNT 421 (464)
Q Consensus 354 ~~~~a~~~~~~~~~~~~~~~~~~~~p~~--~~~~~li~-~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ 421 (464)
++++|...|+++++ ....|.. ..+..+.. .+...|+.++|...|++..+.. |+...+..
T Consensus 349 ~~~~A~~~~~kaL~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~--~~~~~~~~ 410 (472)
T 4g1t_A 349 QYEEAEYYFQKEFS-------KELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKIN--QKSREKEK 410 (472)
T ss_dssp CHHHHHHHHHHHHH-------SCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSC--CCCHHHHH
T ss_pred cHHHHHHHHHHHHh-------cCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--cccHHHHH
Confidence 99999999999942 3323322 12333333 2357899999999999988853 66554433
No 35
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.75 E-value=1.3e-14 Score=144.36 Aligned_cols=347 Identities=11% Similarity=0.114 Sum_probs=263.3
Q ss_pred ccChhchHHHHHHHHhhcchHHHHHHHHHHHHcCC-CCCCchhHHHHHHHHHhhcChHHHHHHhhhcCCCCCchhHHHHH
Q 044770 23 PVHRGEIFHSINRLRKLQLNKRALEVMEWVIRERP-YRPKELDYSYLLEFTIKNHGISQGEKLFCCIPKDYQNELLYNNL 101 (464)
Q Consensus 23 ~~~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~l 101 (464)
..++......+++|...|.+.+|+++++.+.-... +.-+...-+.++.+..+. +..+..++..+.... + ...+
T Consensus 982 ~~~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~--d---~~eI 1055 (1630)
T 1xi4_A 982 TQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNY--D---APDI 1055 (1630)
T ss_pred ccCHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhc--c---HHHH
Confidence 35677788999999999999999999999985221 112234445566666666 556666666665531 1 3447
Q ss_pred HHHHHhhCcHHHHHHHHHHHHHcCCCCchhhHHHHHHHhcCCCCcccHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCh
Q 044770 102 VIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNI 181 (464)
Q Consensus 102 i~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 181 (464)
...+...|.+++|..+|++... .....+.++. ..+++++|.++.++. -+..+|..+..++...|++
T Consensus 1056 A~Iai~lglyEEAf~IYkKa~~-----~~~A~~VLie---~i~nldrAiE~Aerv------n~p~vWsqLAKAql~~G~~ 1121 (1630)
T 1xi4_A 1056 ANIAISNELFEEAFAIFRKFDV-----NTSAVQVLIE---HIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMV 1121 (1630)
T ss_pred HHHHHhCCCHHHHHHHHHHcCC-----HHHHHHHHHH---HHhhHHHHHHHHHhc------CCHHHHHHHHHHHHhCCCH
Confidence 7788889999999999988531 2222333333 667889999988855 3466788999999999999
Q ss_pred hHHHHHHHHHHhCCCCCcHhHHHHHHHHHHhcChhhHHHHHHHHHHhccCCCChhhHHHHHHHHHhhcChhhHHHHHHHh
Q 044770 182 EGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATV 261 (464)
Q Consensus 182 ~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 261 (464)
++|.+.|.+. -|...|..++.+|.+.|++++|.++|....+.. +++...+.++.+|++.++++....+.
T Consensus 1122 kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI--- 1190 (1630)
T 1xi4_A 1122 KEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI--- 1190 (1630)
T ss_pred HHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH---
Confidence 9999999664 377888899999999999999999999887764 33334445888999998888655443
Q ss_pred ccCCCCchhhHHHHHHHhhccCChHHHHHHHHHHHhccccCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCccHHH
Q 044770 262 QELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAIT 341 (464)
Q Consensus 262 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~ 341 (464)
. .++...|..+...|...|++++|..+|.... .|..+..+|++.|++++|.+.+++.. +..+
T Consensus 1191 -~--~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA~---------ny~rLA~tLvkLge~q~AIEaarKA~------n~~a 1252 (1630)
T 1xi4_A 1191 -N--GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVS---------NFGRLASTLVHLGEYQAAVDGARKAN------STRT 1252 (1630)
T ss_pred -h--CCCHHHHHHHHHHHHhcCCHHHHHHHHHhhh---------HHHHHHHHHHHhCCHHHHHHHHHHhC------CHHH
Confidence 2 2233457789999999999999999999852 69999999999999999999999763 5688
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHhHHHHhhhhhcCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCcHHHHHH
Q 044770 342 YRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNT 421 (464)
Q Consensus 342 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ 421 (464)
|..+-.+|...|++..|...... +..+...+..++..|.+.|.+++|..+++...... +-....|+-
T Consensus 1253 Wkev~~acve~~Ef~LA~~cgl~------------Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~Le-raH~gmftE 1319 (1630)
T 1xi4_A 1253 WKEVCFACVDGKEFRLAQMCGLH------------IVVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTE 1319 (1630)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHh------------hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-hhHhHHHHH
Confidence 98888999999998888765433 34455666789999999999999999998777543 233448888
Q ss_pred HHHHHHHcCC
Q 044770 422 LIKAYVKAKI 431 (464)
Q Consensus 422 li~~~~~~g~ 431 (464)
+...|++..-
T Consensus 1320 LaiLyaKy~p 1329 (1630)
T 1xi4_A 1320 LAILYSKFKP 1329 (1630)
T ss_pred HHHHHHhCCH
Confidence 8888888763
No 36
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.72 E-value=1.4e-13 Score=137.14 Aligned_cols=341 Identities=12% Similarity=0.089 Sum_probs=228.8
Q ss_pred HHHHHHHhhcchHHHHHHHHHHHHcCCCCCCchhHHHHHHHHHhhcChHHHHHHhhhcCCCCCchhHHHHHHHHHHhhCc
Q 044770 31 HSINRLRKLQLNKRALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQGEKLFCCIPKDYQNELLYNNLVIACLDKGV 110 (464)
Q Consensus 31 ~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~li~~~~~~~~ 110 (464)
.+...+...|.+++|..+|+.... .....+.+ +-..+++++|.++.++.. +..+|..+..++...|+
T Consensus 1054 eIA~Iai~lglyEEAf~IYkKa~~------~~~A~~VL---ie~i~nldrAiE~Aervn----~p~vWsqLAKAql~~G~ 1120 (1630)
T 1xi4_A 1054 DIANIAISNELFEEAFAIFRKFDV------NTSAVQVL---IEHIGNLDRAYEFAERCN----EPAVWSQLAKAQLQKGM 1120 (1630)
T ss_pred HHHHHHHhCCCHHHHHHHHHHcCC------HHHHHHHH---HHHHhhHHHHHHHHHhcC----CHHHHHHHHHHHHhCCC
Confidence 345566677777777777776421 11112222 226677788877777663 46677788888888888
Q ss_pred HHHHHHHHHHHHHcCCCCchhhHHHHHHHhcCCCCcccHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhHHHHHHHH
Q 044770 111 IKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSD 190 (464)
Q Consensus 111 ~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 190 (464)
+++|++.|.+. -|...|..++..+.+.|++++|.+.+....+.. ++....+.++.+|++.+++++...+.
T Consensus 1121 ~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI-- 1190 (1630)
T 1xi4_A 1121 VKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI-- 1190 (1630)
T ss_pred HHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH--
Confidence 88888888553 366677778888888888888888887766643 33333445777788887777533332
Q ss_pred HHhCCCCCcHhHHHHHHHHHHhcChhhHHHHHHHHHHhccCCCChhhHHHHHHHHHhhcChhhHHHHHHHhccCCCCchh
Q 044770 191 MKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSK 270 (464)
Q Consensus 191 m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 270 (464)
+ .++...|..+...|...|++++|..+|... ..|..+..++.+.|+++.|.+.++.. .+..
T Consensus 1191 --~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA-----~n~~ 1251 (1630)
T 1xi4_A 1191 --N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA-----NSTR 1251 (1630)
T ss_pred --h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh-----CCHH
Confidence 1 345566667777888888888888888774 36777888888888888888888766 3345
Q ss_pred hHHHHHHHhhccCChHHHHHHHHHHHhccccCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCccHHHHHHHHHHHH
Q 044770 271 SYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCF 350 (464)
Q Consensus 271 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~ 350 (464)
+|..+..+|...|++..|......+. .++..+..++..|.+.|.+++|+.+++...... +-....|.-+...++
T Consensus 1252 aWkev~~acve~~Ef~LA~~cgl~Ii-----v~~deLeeli~yYe~~G~feEAI~LlE~aL~Le-raH~gmftELaiLya 1325 (1630)
T 1xi4_A 1252 TWKEVCFACVDGKEFRLAQMCGLHIV-----VHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYS 1325 (1630)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHhhh-----cCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-hhHhHHHHHHHHHHH
Confidence 67777788888888888877665433 355567788888999999999999997776533 223345555555554
Q ss_pred h--cCChHHHHHHHHHhHHHHhhhhhcCCCC------cHHHHHHHHHHHHhcCChhhHHHH-------------HHHHHH
Q 044770 351 K--SNLVEEGFKALELGMKLITTKKVRSSTP------WLETTLSIIEIFAEKGDVGNAENL-------------FEELKK 409 (464)
Q Consensus 351 ~--~~~~~~a~~~~~~~~~~~~~~~~~~~~p------~~~~~~~li~~~~~~g~~~~A~~~-------------~~~m~~ 409 (464)
+ -++..++.+.|..- .+++| +...|..++-.|.+.|+++.|... |++...
T Consensus 1326 Ky~peklmEhlk~f~~r---------ini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm~~h~~~a~~~~~Fk~~i~ 1396 (1630)
T 1xi4_A 1326 KFKPQKMREHLELFWSR---------VNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIIT 1396 (1630)
T ss_pred hCCHHHHHHHHHHHHHh---------cccchHhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhccHhhhhhHHHHHHhc
Confidence 4 34555555555543 33333 456788999999999999998832 222221
Q ss_pred cCCCCcHHHHHHHHHHHHHcC
Q 044770 410 ANYTKYTFVYNTLIKAYVKAK 430 (464)
Q Consensus 410 ~~~~p~~~~~~~li~~~~~~g 430 (464)
. ..|+..|...+.-|...+
T Consensus 1397 k--v~n~elyykai~Fyl~~~ 1415 (1630)
T 1xi4_A 1397 K--VANVELYYRAIQFYLEFK 1415 (1630)
T ss_pred c--cccHHHHHHHHHHHHhhC
Confidence 1 245667777777777655
No 37
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.69 E-value=3.6e-15 Score=127.94 Aligned_cols=225 Identities=8% Similarity=-0.055 Sum_probs=152.5
Q ss_pred hhHHHHHHHHHHhhCcHHHHHHHHHHHHHcCCCCchhhHHHHHHHhcCCCCcccHHHHHHHHHhCCC--CCC----hhhH
Q 044770 95 ELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKV--APH----VSTF 168 (464)
Q Consensus 95 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~----~~~~ 168 (464)
...|..+...+...|++++|+..|++..+.. .+..++..+...+...|++++|...++...+... .++ ..++
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 82 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSF 82 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHH
Confidence 4567777778888888888888888888776 6777788888888888888888888887765321 111 4667
Q ss_pred HHHHHHHHccCChhHHHHHHHHHHhCCCCCcHhHHHHHHHHHHhcChhhHHHHHHHHHHhccCCCChhhHHHHHHHHHhh
Q 044770 169 HILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYL 248 (464)
Q Consensus 169 ~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 248 (464)
..+...+...|++++|...|++..+. .|+. ..+.+.|++++|...++++... .+.+...+..+...+...
T Consensus 83 ~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~-------~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 152 (258)
T 3uq3_A 83 ARIGNAYHKLGDLKKTIEYYQKSLTE--HRTA-------DILTKLRNAEKELKKAEAEAYV-NPEKAEEARLEGKEYFTK 152 (258)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--CCCH-------HHHHHHHHHHHHHHHHHHHHHC-CHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhc--Cchh-------HHHHHHhHHHHHHHHHHHHHHc-CcchHHHHHHHHHHHHHh
Confidence 77778888888888888888887764 3442 3455667777777777777654 222345556666666666
Q ss_pred cChhhHHHHHHHhccCCCCchhhHHHHHHHhhccCChHHHHHHHHHHHhccccCChhhHHHHHHHHHhcCChhHHHHHHH
Q 044770 249 AKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLK 328 (464)
Q Consensus 249 ~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~ 328 (464)
|++++|...++......+.+...+..+...|...|++++|...|+...+.. +.+...|..+..++...|++++|...++
T Consensus 153 ~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 231 (258)
T 3uq3_A 153 SDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAVKEYASALETLD 231 (258)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 666666666666666545555566666666666777777777776666532 2345566666666666777777776666
Q ss_pred HHHh
Q 044770 329 EMSM 332 (464)
Q Consensus 329 ~m~~ 332 (464)
+..+
T Consensus 232 ~a~~ 235 (258)
T 3uq3_A 232 AART 235 (258)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6655
No 38
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.68 E-value=8e-15 Score=125.77 Aligned_cols=228 Identities=7% Similarity=-0.068 Sum_probs=196.9
Q ss_pred hhhHHHHHHHhcCCCCcccHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhCCC--CCc----HhHH
Q 044770 130 YLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEV--EPN----EVSY 203 (464)
Q Consensus 130 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~--~p~----~~~~ 203 (464)
...+..+...+...|++++|...|++..+.. .+...+..+...+...|++++|...|++..+... .|+ ..+|
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 82 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSF 82 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHH
Confidence 4577888889999999999999999999876 7888999999999999999999999999876421 112 5788
Q ss_pred HHHHHHHHhcChhhHHHHHHHHHHhccCCCChhhHHHHHHHHHhhcChhhHHHHHHHhccCCCCchhhHHHHHHHhhccC
Q 044770 204 CILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIA 283 (464)
Q Consensus 204 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 283 (464)
..+..++...|++++|...+++..... |+ ...+...|+++++...++.+....+.....+..+...+...|
T Consensus 83 ~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~-------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (258)
T 3uq3_A 83 ARIGNAYHKLGDLKKTIEYYQKSLTEH--RT-------ADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKS 153 (258)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC--CC-------HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhcC--ch-------hHHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhc
Confidence 899999999999999999999998853 33 245677889999999999998887778888999999999999
Q ss_pred ChHHHHHHHHHHHhccccCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCccHHHHHHHHHHHHhcCChHHHHHHHH
Q 044770 284 QVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALE 363 (464)
Q Consensus 284 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 363 (464)
++++|...|++..+.. +.+...|..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|...++
T Consensus 154 ~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 231 (258)
T 3uq3_A 154 DWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAVKEYASALETLD 231 (258)
T ss_dssp CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 9999999999998843 4467889999999999999999999999998853 2357888899999999999999999999
Q ss_pred HhHHHHh
Q 044770 364 LGMKLIT 370 (464)
Q Consensus 364 ~~~~~~~ 370 (464)
.+++...
T Consensus 232 ~a~~~~~ 238 (258)
T 3uq3_A 232 AARTKDA 238 (258)
T ss_dssp HHHHHHH
T ss_pred HHHHhCh
Confidence 9976543
No 39
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.67 E-value=8.5e-14 Score=129.35 Aligned_cols=349 Identities=11% Similarity=0.014 Sum_probs=233.5
Q ss_pred HHHHHHHHhhcchHHHHHHHHHHHHcCCCCCCchhHHHHHHHHHhhcCh---HHHHHHhhhcCCCCCchhHHHHHHHHHH
Q 044770 30 FHSINRLRKLQLNKRALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGI---SQGEKLFCCIPKDYQNELLYNNLVIACL 106 (464)
Q Consensus 30 ~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~---~~a~~~~~~~~~~~~~~~~~~~li~~~~ 106 (464)
..+...+.+.|++++|++.|+...+. | +...+..+...|...|+. ++|...|++..+. +...+..+...+.
T Consensus 7 ~~la~~~~~~g~~~~A~~~~~~aa~~-g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~--~~~A~~~Lg~~~~ 80 (452)
T 3e4b_A 7 QRLANEALKRGDTVTAQQNYQQLAEL-G---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT--SPRAQARLGRLLA 80 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH-T---CCTGGGTCC------------------------------CHHHHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHC-C---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC--CHHHHHHHHHHHH
Confidence 34667778899999999999999874 3 455666777777778888 8999999998874 6667777777555
Q ss_pred hhC-----cHHHHHHHHHHHHHcCCCCchhhHHHHHHHhcCCCCc---ccHHHHHHHHHhCCCCCChhhHHHHHHHHHcc
Q 044770 107 DKG-----VIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRR---KTIPNILRQMKADKVAPHVSTFHILMKIEAND 178 (464)
Q Consensus 107 ~~~-----~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 178 (464)
..+ ++++|+..|++..+.|. ...+..|...|...+.. ..+.+.+......| +...+..|...|...
T Consensus 81 ~~~~~~~~~~~~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~ 154 (452)
T 3e4b_A 81 AKPGATEAEHHEAESLLKKAFANGE---GNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQ 154 (452)
T ss_dssp TC--CCHHHHHHHHHHHHHHHHTTC---SSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHH
T ss_pred hCCCCCCcCHHHHHHHHHHHHHCCC---HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcC
Confidence 555 88999999999998763 23666677777665544 34555555555444 355666778888888
Q ss_pred CChhHHHHHHHHHHhCCCCCcHhHHHHHHHHHHhcC---hhhHHHHHHHHHHhccCCCChhhHHHHHHHHHhh----cCh
Q 044770 179 HNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVAR---LYTVAETYVEALEKSMTGNNWSTLDVLIILYGYL----AKG 251 (464)
Q Consensus 179 ~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~ 251 (464)
+.++++......+.+.-...+...+..+...|.+.| +.++|+..|++..+.|. ++...+..+...|... ++.
T Consensus 155 ~~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~-~~a~~~~~Lg~~y~~g~~~~~d~ 233 (452)
T 3e4b_A 155 GTYDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGT-VTAQRVDSVARVLGDATLGTPDE 233 (452)
T ss_dssp TCGGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTC-SCHHHHHHHHHHHTCGGGSSCCH
T ss_pred CCcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHhCCCCCCCCH
Confidence 866665555333332212234448888888898999 99999999999988764 3444445666677554 689
Q ss_pred hhHHHHHHHhccCCCCchhhHHHHHHH-h--hccCChHHHHHHHHHHHhccccCChhhHHHHHHHHHhcC-----ChhHH
Q 044770 252 KDLERIWATVQELPNVRSKSYVLAIEA-F--GRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNG-----FIDKA 323 (464)
Q Consensus 252 ~~a~~~~~~~~~~~~~~~~~~~~l~~~-~--~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~-----~~~~a 323 (464)
++|..+++... +.+...+..+... | ...+++++|...|++..+.| +...+..+...|. .| ++++|
T Consensus 234 ~~A~~~~~~aa---~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A 306 (452)
T 3e4b_A 234 KTAQALLEKIA---PGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAA 306 (452)
T ss_dssp HHHHHHHHHHG---GGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHH
T ss_pred HHHHHHHHHHc---CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHH
Confidence 99999999987 4455567777776 4 56899999999999999866 5667888888777 55 89999
Q ss_pred HHHHHHHHhCCCCccHHHHHHHHHHHHh----cCChHHHHHHHHHhHHHHhhhhhcCCCCcHHHHHHHHHHHHh----cC
Q 044770 324 SGLLKEMSMNGCKPNAITYRHLALGCFK----SNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAE----KG 395 (464)
Q Consensus 324 ~~~~~~m~~~g~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~----~g 395 (464)
...|++.. .| +......+...|.. ..++++|..+|+.+ ...+. |+ ....|...|.. ..
T Consensus 307 ~~~~~~Aa-~g---~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A-------a~~g~-~~--A~~~Lg~~y~~G~g~~~ 372 (452)
T 3e4b_A 307 EAHFEKAV-GR---EVAADYYLGQIYRRGYLGKVYPQKALDHLLTA-------ARNGQ-NS--ADFAIAQLFSQGKGTKP 372 (452)
T ss_dssp HHHHHTTT-TT---CHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHH-------HTTTC-TT--HHHHHHHHHHSCTTBCC
T ss_pred HHHHHHHh-CC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHH-------HhhCh-HH--HHHHHHHHHHhCCCCCC
Confidence 99999887 43 55666666666655 34899999999998 34443 33 33466666654 46
Q ss_pred ChhhHHHHHHHHHHcCC
Q 044770 396 DVGNAENLFEELKKANY 412 (464)
Q Consensus 396 ~~~~A~~~~~~m~~~~~ 412 (464)
+.++|...|+...+.|.
T Consensus 373 d~~~A~~~~~~A~~~g~ 389 (452)
T 3e4b_A 373 DPLNAYVFSQLAKAQDT 389 (452)
T ss_dssp CHHHHHHHHHHHHTTCC
T ss_pred CHHHHHHHHHHHHHCCC
Confidence 89999999999998874
No 40
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.66 E-value=1.7e-14 Score=120.12 Aligned_cols=199 Identities=11% Similarity=0.010 Sum_probs=132.0
Q ss_pred CCChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCcHhHHHHHHHHHHhcChhhHHHHHHHHHHhccCCCChhhHHHH
Q 044770 162 APHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVL 241 (464)
Q Consensus 162 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 241 (464)
+++...+..+...+.+.|++++|...|++..+.. +.+...+..+..++.+.|++++|+..+++..+.. +.+...+..+
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~l 79 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVL 79 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHH
Confidence 4455556666666666666666666666666543 2245556666666666666666666666666542 2345556666
Q ss_pred HHHHHhh-----------cChhhHHHHHHHhccCCCCchhhHHHHHHHhhccCChHHHHHHHHHHHhccccCChhhHHHH
Q 044770 242 IILYGYL-----------AKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSV 310 (464)
Q Consensus 242 ~~~~~~~-----------~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 310 (464)
..++... |++++|...++......+.+...+..+...|...|++++|...|++..+.. .++..+..+
T Consensus 80 g~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~l 157 (217)
T 2pl2_A 80 SEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSAL 157 (217)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHH
T ss_pred HHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHH
Confidence 6666666 778888888877777666667778888888889999999999999888866 677888889
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCccHHHHHHHHHHHHhcCChHHHHHHHHHh
Q 044770 311 ISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELG 365 (464)
Q Consensus 311 i~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 365 (464)
..+|...|++++|+..|++..+.. +-+...+..+...+...|++++|+..++..
T Consensus 158 a~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 158 AELYLSMGRLDEALAQYAKALEQA-PKDLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTC--------------
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 999999999999999999988743 225677778888888899999998888876
No 41
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.65 E-value=7.7e-15 Score=122.17 Aligned_cols=206 Identities=15% Similarity=-0.049 Sum_probs=85.5
Q ss_pred CchhHHHHHHHHHhhcChHHHHHHhhhcCCC-CCchhHHHHHHHHHHhhCcHHHHHHHHHHHHHcCCCCchhhHHHHHHH
Q 044770 61 KELDYSYLLEFTIKNHGISQGEKLFCCIPKD-YQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIIL 139 (464)
Q Consensus 61 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~ 139 (464)
+...+..+...+...|++++|...|++.... +.+...|..+...+.+.|++++|+..|++..+.. +.+...+..+...
T Consensus 4 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~ 82 (217)
T 2pl2_A 4 AEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLSEA 82 (217)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHH
Confidence 3444444444455555555555555444433 2234444444445555555555555555444432 1223334444433
Q ss_pred hcCCCCcccHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCcHhHHHHHHHHHHhcChhhHH
Q 044770 140 NSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVA 219 (464)
Q Consensus 140 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a 219 (464)
+...+ .. .+. .....|++++|...|++..+.. +-+...|..+..++...|++++|
T Consensus 83 ~~~~~-------------~~--~~~---------~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A 137 (217)
T 2pl2_A 83 YVALY-------------RQ--AED---------RERGKGYLEQALSVLKDAERVN-PRYAPLHLQRGLVYALLGERDKA 137 (217)
T ss_dssp HHHHH-------------HT--CSS---------HHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhh-------------hh--hhh---------hcccccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChHHH
Confidence 33330 00 000 0001155555555555554432 11234444455555555555555
Q ss_pred HHHHHHHHhccCCCChhhHHHHHHHHHhhcChhhHHHHHHHhccCCCCchhhHHHHHHHhhccCChHHHHHHHHH
Q 044770 220 ETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLE 294 (464)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 294 (464)
+..|++..+.. .++..+..+..++...|++++|...++......+.+...+..+...+...|++++|...|++
T Consensus 138 ~~~~~~al~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~ 210 (217)
T 2pl2_A 138 EASLKQALALE--DTPEIRSALAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAAL 210 (217)
T ss_dssp HHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC-------------
T ss_pred HHHHHHHHhcc--cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 55555555443 34444444444444444444444444444443333444444455555555555555554443
No 42
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.65 E-value=6.1e-15 Score=127.91 Aligned_cols=130 Identities=9% Similarity=-0.096 Sum_probs=64.8
Q ss_pred hhHHHHHHHHHHhhCcHHHHHHHHHHHHHcCCCCchhhHHHHHHHhcCCCCcccHHHHHHHHHhCCCCCChhhHHHHHHH
Q 044770 95 ELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKI 174 (464)
Q Consensus 95 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 174 (464)
..+|..+...+...|++++|+..|+++.+.. +.+..++..+...+...|++++|...|+++.+.. +.+...+..+...
T Consensus 43 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~ 120 (275)
T 1xnf_A 43 AQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELD-PTYNYAHLNRGIA 120 (275)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-ccccHHHHHHHHH
Confidence 3445555555555555555555555555542 2234455555555555555555555555555432 2334455555555
Q ss_pred HHccCChhHHHHHHHHHHhCCCCCcHhHHHHHHHHHHhcChhhHHHHHHHHHHh
Q 044770 175 EANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEK 228 (464)
Q Consensus 175 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 228 (464)
+...|++++|...|+++.+. .|+.......+..+...|++++|...+++...
T Consensus 121 ~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 172 (275)
T 1xnf_A 121 LYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFE 172 (275)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 55555555555555555543 23333333333333444555555555554443
No 43
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.64 E-value=1e-13 Score=120.00 Aligned_cols=250 Identities=10% Similarity=0.017 Sum_probs=158.0
Q ss_pred HHHHHHHccCChhHHHHHHHHHHhCCCCCcHhHHHHHHHHHHhcChhhHHHHHHHHHHhccCCCC--hhhHHHHHHHHHh
Q 044770 170 ILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNN--WSTLDVLIILYGY 247 (464)
Q Consensus 170 ~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~ 247 (464)
.....+...|++++|...|++..+.. +.+...+..+..++...|++++|+..+++..+....++ ...+..+...+..
T Consensus 8 ~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~ 86 (272)
T 3u4t_A 8 RYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMK 86 (272)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHH
Confidence 34455555666666666666655542 11233555555566666666666666666555221111 1225556666666
Q ss_pred hcChhhHHHHHHHhccCCCCchhhHHHHHHHhhccCChHHHHHHHHHHHhccccCChhhHHHHHHHHHhcCChhHHHHHH
Q 044770 248 LAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLL 327 (464)
Q Consensus 248 ~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~ 327 (464)
.|++++|...++......+.+...+..+...|...|++++|...|++..+. .+.+...|..+...+...+++++|...|
T Consensus 87 ~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 165 (272)
T 3u4t_A 87 KGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRP-TTTDPKVFYELGQAYYYNKEYVKADSSF 165 (272)
T ss_dssp TTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCS-SCCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhc-CCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666666666665544455556777788888888888888888877764 3335566666663444455889999999
Q ss_pred HHHHhCCCCc-cHHHHHHHHHHHHhcCC---hHHHHHHHHHhHHHHhhhhhcCCCCcHHHHHHHHHHHHhcCChhhHHHH
Q 044770 328 KEMSMNGCKP-NAITYRHLALGCFKSNL---VEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENL 403 (464)
Q Consensus 328 ~~m~~~g~~p-~~~~~~~ll~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 403 (464)
+++.+. .| +...+..+...+...|+ +++|...++++++................|..+...|...|++++|...
T Consensus 166 ~~a~~~--~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 243 (272)
T 3u4t_A 166 VKVLEL--KPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAA 243 (272)
T ss_dssp HHHHHH--STTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHh--CccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 888874 34 35667777777777787 8889999999876543211111001235678899999999999999999
Q ss_pred HHHHHHcCCCCc-HHHHHHHHHH
Q 044770 404 FEELKKANYTKY-TFVYNTLIKA 425 (464)
Q Consensus 404 ~~~m~~~~~~p~-~~~~~~li~~ 425 (464)
|++..+.. |+ ...+..+-..
T Consensus 244 ~~~al~~~--p~~~~a~~~l~~~ 264 (272)
T 3u4t_A 244 WKNILALD--PTNKKAIDGLKMK 264 (272)
T ss_dssp HHHHHHHC--TTCHHHHHHHC--
T ss_pred HHHHHhcC--ccHHHHHHHhhhh
Confidence 99999865 54 4355444333
No 44
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.64 E-value=4.6e-14 Score=122.15 Aligned_cols=200 Identities=11% Similarity=0.005 Sum_probs=139.1
Q ss_pred ChhchHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCCchhHHHHHHHHHhhcChHHHHHHhhhcCCCCCc----hhHHHH
Q 044770 25 HRGEIFHSINRLRKLQLNKRALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQGEKLFCCIPKDYQN----ELLYNN 100 (464)
Q Consensus 25 ~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~----~~~~~~ 100 (464)
++..+......+...|++++|+..|+.+.+.. +.+...+..+...+...|++++|...|++.....++ ..+|..
T Consensus 2 n~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 79 (272)
T 3u4t_A 2 NDDVEFRYADFLFKNNNYAEAIEVFNKLEAKK--YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEY 79 (272)
T ss_dssp ---CHHHHHHHHHTTTCHHHHHHHHHHHHHTT--CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHH
T ss_pred cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHH
Confidence 34566677788888889999999998888743 234557788888888888888888888877664222 234778
Q ss_pred HHHHHHhhCcHHHHHHHHHHHHHcCCCCchhhHHHHHHHhcCCCCcccHHHHHHHHHhCCCCCChhhHHHHHHHHHccCC
Q 044770 101 LVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHN 180 (464)
Q Consensus 101 li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 180 (464)
+...+...|++++|+..|++..+.. +.+..++..+...+...|++++|...|++..+.. +.+...+..+...+...++
T Consensus 80 lg~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~ 157 (272)
T 3u4t_A 80 YGKILMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYYNKE 157 (272)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHHHHH
Confidence 8888888888888888888888753 3355677777788888888888888888777653 4455566666623334457
Q ss_pred hhHHHHHHHHHHhCCCCCcHhHHHHHHHHHHhcCh---hhHHHHHHHHHHhc
Q 044770 181 IEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARL---YTVAETYVEALEKS 229 (464)
Q Consensus 181 ~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~---~~~a~~~~~~~~~~ 229 (464)
+++|.+.|++..+.. +.+...+..+..++...++ +++|...+++..+.
T Consensus 158 ~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~ 208 (272)
T 3u4t_A 158 YVKADSSFVKVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEV 208 (272)
T ss_dssp HHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHH
Confidence 888888887777652 2235556666666666666 66677777666543
No 45
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.63 E-value=2.2e-14 Score=124.31 Aligned_cols=247 Identities=13% Similarity=0.019 Sum_probs=192.3
Q ss_pred hhCcHHHHHHHHHHHHHcCC---CCchhhHHHHHHHhcCCCCcccHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhH
Q 044770 107 DKGVIKLSLEYMKKMRVLGH---SISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEG 183 (464)
Q Consensus 107 ~~~~~~~a~~~~~~m~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 183 (464)
..|++++|+..|+++.+... +.+..++..+...+...|++++|...|+++.+.. +.+..+|..+...+...|++++
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~ 95 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDA 95 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHH
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHH
Confidence 45889999999999998632 2246778889999999999999999999998865 5578899999999999999999
Q ss_pred HHHHHHHHHhCCCCCcHhHHHHHHHHHHhcChhhHHHHHHHHHHhccCCCChhhHHHHHHHHHhhcChhhHHHHHHHhcc
Q 044770 184 LMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQE 263 (464)
Q Consensus 184 a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 263 (464)
|...|++..+.. +.+...+..+..++.+.|++++|...++++.+.. |+.......+..+...|+.++|...++....
T Consensus 96 A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 172 (275)
T 1xnf_A 96 AYEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD--PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFE 172 (275)
T ss_dssp HHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 999999998763 3357888999999999999999999999998753 4444444555666778999999999987766
Q ss_pred CCCCchhhHHHHHHHhhccCChHHHHHHHHHHHhccccC---ChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCccHH
Q 044770 264 LPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLK---ATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAI 340 (464)
Q Consensus 264 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ 340 (464)
..+.+...+ .++..+...++.++|...++......... +...|..+...|...|++++|...|++..+. .|+.
T Consensus 173 ~~~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~- 248 (275)
T 1xnf_A 173 KSDKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVAN--NVHN- 248 (275)
T ss_dssp HSCCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CCTT-
T ss_pred cCCcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--Cchh-
Confidence 444444444 46777788888899999999887643211 2578889999999999999999999999984 4532
Q ss_pred HHHHHHHHHHhcCChHHHHHHH
Q 044770 341 TYRHLALGCFKSNLVEEGFKAL 362 (464)
Q Consensus 341 ~~~~ll~~~~~~~~~~~a~~~~ 362 (464)
+.....++...|++++|++.+
T Consensus 249 -~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 249 -FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp -CHHHHHHHHHHHHHHHC----
T ss_pred -HHHHHHHHHHHHHHHhhHHHH
Confidence 222344566778888877665
No 46
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.62 E-value=1.2e-13 Score=118.08 Aligned_cols=200 Identities=10% Similarity=0.000 Sum_probs=100.7
Q ss_pred hhHHHHHHHHHHhhCcHHHHHHHHHHHHHcCCCCchhhHHHHHHHhcCCCCcccHHHHHHHHHhCCCCCChhhHHHHHHH
Q 044770 95 ELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKI 174 (464)
Q Consensus 95 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 174 (464)
...|..+...+...|++++|+..|+++.+.. +.+..++..+...+...|++++|.+.++++.+.. +.+...+..+...
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~ 114 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGF 114 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHH
Confidence 3455555556666666666666666655542 2244455555555555555555555555555432 2344455555555
Q ss_pred HHccCChhHHHHHHHHHHhCCCCC-cHhHHHHHHHHHHhcChhhHHHHHHHHHHhccCCCChhhHHHHHHHHHhhcChhh
Q 044770 175 EANDHNIEGLMKVYSDMKRSEVEP-NEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKD 253 (464)
Q Consensus 175 ~~~~~~~~~a~~~~~~m~~~~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 253 (464)
+...|++++|.++|+++.+.+..| +...+..+..++...|++++|...++++.+.
T Consensus 115 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~------------------------ 170 (252)
T 2ho1_A 115 LYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRL------------------------ 170 (252)
T ss_dssp HHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------------------------
T ss_pred HHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc------------------------
Confidence 555555555555555554421222 2334444445555555555555555554443
Q ss_pred HHHHHHHhccCCCCchhhHHHHHHHhhccCChHHHHHHHHHHHhccccCChhhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 044770 254 LERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSM 332 (464)
Q Consensus 254 a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 332 (464)
.+.+...+..+...+...|++++|...++.+.+. .+.+...+..+...+...|++++|...++++.+
T Consensus 171 -----------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~ 237 (252)
T 2ho1_A 171 -----------NRNQPSVALEMADLLYKEREYVPARQYYDLFAQG-GGQNARSLLLGIRLAKVFEDRDTAASYGLQLKR 237 (252)
T ss_dssp -----------CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT-SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred -----------CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 2222233444444555555555555555554442 222344445555555555555555555555554
No 47
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.62 E-value=2e-11 Score=117.44 Aligned_cols=429 Identities=10% Similarity=0.018 Sum_probs=294.0
Q ss_pred hhHHHHhhcCccChhchHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCCchhHHHHHHHHHhhcC---hHHHHHHhhhcC
Q 044770 13 AFQSWMREGFPVHRGEIFHSINRLRKLQLNKRALEVMEWVIRERPYRPKELDYSYLLEFTIKNHG---ISQGEKLFCCIP 89 (464)
Q Consensus 13 ~l~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~ 89 (464)
.++.-... .|.+...+..++..+.+.+.++.+..+|+.+.... +.+...|...+..-.+.|+ ++.+..+|++..
T Consensus 54 ~lE~~l~~-np~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~f--P~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal 130 (679)
T 4e6h_A 54 KLNDMIEE-QPTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRF--PLMANIWCMRLSLEFDKMEELDAAVIEPVLARCL 130 (679)
T ss_dssp HHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHT
T ss_pred HHHHHHHH-CcCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHH
Confidence 44444444 35789999999999999999999999999999864 5567788888888888888 999999999998
Q ss_pred CCC---CchhHHHHHHHHHHhhCcH--------HHHHHHHHHHHH-cCC-CCc-hhhHHHHHHHhcC---------CCCc
Q 044770 90 KDY---QNELLYNNLVIACLDKGVI--------KLSLEYMKKMRV-LGH-SIS-YLVFNRLIILNSS---------PGRR 146 (464)
Q Consensus 90 ~~~---~~~~~~~~li~~~~~~~~~--------~~a~~~~~~m~~-~~~-~~~-~~~~~~l~~~~~~---------~~~~ 146 (464)
... |++..|...+....+.++. +...++|+..+. .|. .|+ ...|...+..... .+++
T Consensus 131 ~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~ 210 (679)
T 4e6h_A 131 SKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRV 210 (679)
T ss_dssp CSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHH
T ss_pred HhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHH
Confidence 885 8888998888766665543 345578877665 465 454 4678777766543 2346
Q ss_pred ccHHHHHHHHHhCCCCCChhhHHHHHHHHHc-------------cCChhHHHHHHHHHHh--CCCC--------------
Q 044770 147 KTIPNILRQMKADKVAPHVSTFHILMKIEAN-------------DHNIEGLMKVYSDMKR--SEVE-------------- 197 (464)
Q Consensus 147 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------------~~~~~~a~~~~~~m~~--~~~~-------------- 197 (464)
+.+..+|+..+......-..+|......-.. ..+++.|...+.++.. .++.
T Consensus 211 ~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~ 290 (679)
T 4e6h_A 211 QYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESN 290 (679)
T ss_dssp HHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTT
T ss_pred HHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchhcc
Confidence 6788999998853211112333322211111 1223445555554321 1111
Q ss_pred -C-----c---HhHHHHHHHHHHhcC-------hhhHHHHHHHHHHhccCCCChhhHHHHHHHHHhhcChhhHH-HHHHH
Q 044770 198 -P-----N---EVSYCILATAHAVAR-------LYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLE-RIWAT 260 (464)
Q Consensus 198 -p-----~---~~~~~~li~~~~~~~-------~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~-~~~~~ 260 (464)
| + ...|...+.---..+ ..+.+..+|++.... .+-....|...+..+...|+.+.|. .+++.
T Consensus 291 ~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~~~~~a~r~il~r 369 (679)
T 4e6h_A 291 LPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH-VCFAPEIWFNMANYQGEKNTDSTVITKYLKL 369 (679)
T ss_dssp SCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHH
T ss_pred CCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 1 0 123333333222221 123456778888776 5557788888888888999999996 99999
Q ss_pred hccCCCCchhhHHHHHHHhhccCChHHHHHHHHHHHhccc---------cCC------------hhhHHHHHHHHHhcCC
Q 044770 261 VQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQ---------LKA------------TEQYNSVISVYCKNGF 319 (464)
Q Consensus 261 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~---------~~~------------~~~~~~li~~~~~~~~ 319 (464)
.....+.+...|...+....+.|+++.|.++|+.+.+... .|+ ...|...+....+.|.
T Consensus 370 Ai~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~ 449 (679)
T 4e6h_A 370 GQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQG 449 (679)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCC
Confidence 8886666666777888888899999999999999886320 131 2368888888888899
Q ss_pred hhHHHHHHHHHHhC-CCCccHHHHHHHHHHHHhc-CChHHHHHHHHHhHHHHhhhhhcCCCCcHHHHHHHHHHHHhcCCh
Q 044770 320 IDKASGLLKEMSMN-GCKPNAITYRHLALGCFKS-NLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDV 397 (464)
Q Consensus 320 ~~~a~~~~~~m~~~-g~~p~~~~~~~ll~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~ 397 (464)
.+.|..+|.+.++. +. +....|......-.+. ++.+.|..+|+.+++. ..-+...+...++.....|+.
T Consensus 450 l~~AR~vf~~A~~~~~~-~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~--------~p~~~~~w~~y~~fe~~~~~~ 520 (679)
T 4e6h_A 450 LAASRKIFGKCRRLKKL-VTPDIYLENAYIEYHISKDTKTACKVLELGLKY--------FATDGEYINKYLDFLIYVNEE 520 (679)
T ss_dssp HHHHHHHHHHHHHTGGG-SCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH--------HTTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHHHHHhcCC-CChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--------CCCchHHHHHHHHHHHhCCCH
Confidence 99999999999885 21 1223333322222333 5599999999999642 222455567888888889999
Q ss_pred hhHHHHHHHHHHcCCCC--cHHHHHHHHHHHHHcCCC--hhHHHHHHHhCCCCCCHHHHHHHH
Q 044770 398 GNAENLFEELKKANYTK--YTFVYNTLIKAYVKAKIN--DPNLLRRMILGGARPDAETYSLLK 456 (464)
Q Consensus 398 ~~A~~~~~~m~~~~~~p--~~~~~~~li~~~~~~g~~--a~~~~~~m~~~~~~p~~~t~~~L~ 456 (464)
+.|..+|++.......+ ....|...+.--.+.|+. +.++.++|.+.- |+......+.
T Consensus 521 ~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~--P~~~~~~~f~ 581 (679)
T 4e6h_A 521 SQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKF--PEVNKLEEFT 581 (679)
T ss_dssp HHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHS--TTCCHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCcHHHHHH
Confidence 99999999998865322 345899999999999986 789999999863 5555555553
No 48
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.61 E-value=1.9e-13 Score=123.06 Aligned_cols=247 Identities=10% Similarity=0.043 Sum_probs=131.3
Q ss_pred hhHHHHHHHHHHhhCcHHHHHHHHHHHHHcCCCCchhhHHHHHHHhcCCCC-cccHHHHHHHHHhCCCCCChhhHHHHHH
Q 044770 95 ELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGR-RKTIPNILRQMKADKVAPHVSTFHILMK 173 (464)
Q Consensus 95 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 173 (464)
..+|+.+...+...|++++|+..+++.++.. +-+..+|+.+..++...|+ +++|+..|+++++.. +.+...|+.+..
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g~ 174 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRV 174 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
Confidence 3445555555555555555555555555542 2234455555555555554 555555555555543 334455555555
Q ss_pred HHHccCChhHHHHHHHHHHhCCCCCcHhHHHHHHHHHHhcChhhHHHHHHHHHHhccCCCChhhHHHHHHHHHh-hcChh
Q 044770 174 IEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGY-LAKGK 252 (464)
Q Consensus 174 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~ 252 (464)
++...|++++|+..|+++.+.. +-+...|..+..++.+.|++++|+..++++.+.. +.+...|+.+..++.. .|..+
T Consensus 175 ~~~~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~-P~~~~a~~~lg~~l~~l~~~~~ 252 (382)
T 2h6f_A 175 LVEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYND 252 (382)
T ss_dssp HHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSCS
T ss_pred HHHHccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCcch
Confidence 5555555555555555555442 1244455555555555555555555555555542 2244555555555555 33334
Q ss_pred hH-----HHHHHHhccCCCCchhhHHHHHHHhhccC--ChHHHHHHHHHHHhccccCChhhHHHHHHHHHhcC-------
Q 044770 253 DL-----ERIWATVQELPNVRSKSYVLAIEAFGRIA--QVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNG------- 318 (464)
Q Consensus 253 ~a-----~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~------- 318 (464)
+| ...++......+.+...|..+...+...| ++++|.+.+..+ + ..+.+...+..+...|.+.|
T Consensus 253 eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~-~~p~~~~al~~La~~~~~~~~~~~~~~ 330 (382)
T 2h6f_A 253 RAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-Q-PSHSSPYLIAFLVDIYEDMLENQCDNK 330 (382)
T ss_dssp HHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-T-TTCCCHHHHHHHHHHHHHHHHTTCSSH
T ss_pred HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-c-cCCCCHHHHHHHHHHHHHHhcccccch
Confidence 44 34555555544445555666666666655 466677666666 2 33345556666666666653
Q ss_pred --ChhHHHHHHHHH-HhCCCCccH-HHHHHHHHHH
Q 044770 319 --FIDKASGLLKEM-SMNGCKPNA-ITYRHLALGC 349 (464)
Q Consensus 319 --~~~~a~~~~~~m-~~~g~~p~~-~~~~~ll~~~ 349 (464)
..++|+.+|+++ .+ +.|.. ..|..+...+
T Consensus 331 ~~~~~~A~~~~~~l~~~--~DP~r~~~w~~~~~~l 363 (382)
T 2h6f_A 331 EDILNKALELCEILAKE--KDTIRKEYWRYIGRSL 363 (382)
T ss_dssp HHHHHHHHHHHHHHHHT--TCGGGHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH--hCchhHHHHHHHHHHH
Confidence 246777777776 44 34443 3344444333
No 49
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.61 E-value=1.7e-14 Score=132.70 Aligned_cols=299 Identities=9% Similarity=-0.065 Sum_probs=175.7
Q ss_pred hHHHHHHHHHHhhCcHHHHHHHHHHHHHcCCCCc----hhhHHHHHHHhcCCCCcccHHHHHHHHHhC----CCCC-Chh
Q 044770 96 LLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSIS----YLVFNRLIILNSSPGRRKTIPNILRQMKAD----KVAP-HVS 166 (464)
Q Consensus 96 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~ 166 (464)
..+......+...|++++|+..|++..+.+. .+ ..++..+...+...|++++|...+++.... +-.| ...
T Consensus 10 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 88 (406)
T 3sf4_A 10 LELALEGERLCKSGDCRAGVSFFEAAVQVGT-EDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAK 88 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-SCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHH
Confidence 3444445555555666666666655555421 11 234555555555556666666555554321 1111 133
Q ss_pred hHHHHHHHHHccCChhHHHHHHHHHHhCC----C-CCcHhHHHHHHHHHHhcCh--------------------hhHHHH
Q 044770 167 TFHILMKIEANDHNIEGLMKVYSDMKRSE----V-EPNEVSYCILATAHAVARL--------------------YTVAET 221 (464)
Q Consensus 167 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~----~-~p~~~~~~~li~~~~~~~~--------------------~~~a~~ 221 (464)
++..+...+...|++++|...+++..+.. - .....++..+...+...|+ +++|..
T Consensus 89 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~ 168 (406)
T 3sf4_A 89 ASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVD 168 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHH
Confidence 45556666666666666666666554321 0 0013355666666666777 677776
Q ss_pred HHHHHHhcc--C--CC-ChhhHHHHHHHHHhhcChhhHHHHHHHhccC----CC--CchhhHHHHHHHhhccCChHHHHH
Q 044770 222 YVEALEKSM--T--GN-NWSTLDVLIILYGYLAKGKDLERIWATVQEL----PN--VRSKSYVLAIEAFGRIAQVSRAEE 290 (464)
Q Consensus 222 ~~~~~~~~~--~--~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~--~~~~~~~~l~~~~~~~g~~~~a~~ 290 (464)
.+++..... . .+ ...++..+...+...|++++|...++..... +. .....+..+...|...|++++|..
T Consensus 169 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 248 (406)
T 3sf4_A 169 FYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASE 248 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHH
Confidence 666654321 1 11 1235566666677777777777766665441 11 112257777888888888888888
Q ss_pred HHHHHHhcccc-C----ChhhHHHHHHHHHhcCChhHHHHHHHHHHhC----CCCc-cHHHHHHHHHHHHhcCChHHHHH
Q 044770 291 LWLEMQSVKQL-K----ATEQYNSVISVYCKNGFIDKASGLLKEMSMN----GCKP-NAITYRHLALGCFKSNLVEEGFK 360 (464)
Q Consensus 291 ~~~~~~~~~~~-~----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----g~~p-~~~~~~~ll~~~~~~~~~~~a~~ 360 (464)
.+++..+.... + ...++..+...|...|++++|...+++..+. +-.+ ...++..+...+...|++++|..
T Consensus 249 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 328 (406)
T 3sf4_A 249 YYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMH 328 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 88877642211 1 1456778888888889999999888887652 1111 14567777788888899999999
Q ss_pred HHHHhHHHHhhhhhcCCCC-cHHHHHHHHHHHHhcCChh
Q 044770 361 ALELGMKLITTKKVRSSTP-WLETTLSIIEIFAEKGDVG 398 (464)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~ 398 (464)
.++.+++.... .+..+ ...++..+...+...|+..
T Consensus 329 ~~~~al~~~~~---~~~~~~~~~~~~~l~~~~~~~g~~~ 364 (406)
T 3sf4_A 329 FAEKHLEISRE---VGDKSGELTARLNLSDLQMVLGLSY 364 (406)
T ss_dssp HHHHHHHHHHH---TTCHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHH---hcCCcchhHHHHHHHHHHHHhhHhH
Confidence 99988765432 22222 3455667777777777664
No 50
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.61 E-value=1.7e-13 Score=117.03 Aligned_cols=199 Identities=14% Similarity=0.012 Sum_probs=160.6
Q ss_pred chhHHHHHHHHHhhcChHHHHHHhhhcCCC-CCchhHHHHHHHHHHhhCcHHHHHHHHHHHHHcCCCCchhhHHHHHHHh
Q 044770 62 ELDYSYLLEFTIKNHGISQGEKLFCCIPKD-YQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILN 140 (464)
Q Consensus 62 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~ 140 (464)
...+..+...+...|++++|...|+++... +.+...|..+...+...|++++|++.|+++.+.. +.+...+..+...+
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~ 115 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFL 115 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHH
Confidence 467888888999999999999999998765 3467889999999999999999999999999864 34678889999999
Q ss_pred cCCCCcccHHHHHHHHHhCCCCC-ChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCcHhHHHHHHHHHHhcChhhHH
Q 044770 141 SSPGRRKTIPNILRQMKADKVAP-HVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVA 219 (464)
Q Consensus 141 ~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a 219 (464)
...|++++|.+.++++.+.+..| +...+..+...+...|++++|...|++..+.. +.+...+..+...+...|++++|
T Consensus 116 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A 194 (252)
T 2ho1_A 116 YEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKEREYVPA 194 (252)
T ss_dssp HHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCCHHHH
Confidence 99999999999999998733344 56678889999999999999999999988764 33577888888999999999999
Q ss_pred HHHHHHHHhccCCCChhhHHHHHHHHHhhcChhhHHHHHHHhcc
Q 044770 220 ETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQE 263 (464)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 263 (464)
...++++.+. .+.+...+..+...+...|+.++|.+.++.+..
T Consensus 195 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~ 237 (252)
T 2ho1_A 195 RQYYDLFAQG-GGQNARSLLLGIRLAKVFEDRDTAASYGLQLKR 237 (252)
T ss_dssp HHHHHHHHTT-SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHh-CcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 9999998775 234445555555555555555555555555544
No 51
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.61 E-value=1.8e-13 Score=127.25 Aligned_cols=346 Identities=10% Similarity=-0.028 Sum_probs=231.9
Q ss_pred HHHHHHHhhcChHHHHHHhhhcCCCCCchhHHHHHHHHHHhhCcH---HHHHHHHHHHHHcCCCCchhhHHHHHHHhcCC
Q 044770 67 YLLEFTIKNHGISQGEKLFCCIPKDYQNELLYNNLVIACLDKGVI---KLSLEYMKKMRVLGHSISYLVFNRLIILNSSP 143 (464)
Q Consensus 67 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~li~~~~~~~~~---~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~ 143 (464)
.+...+.+.|++++|.++|++..+. .+...+..+...|...|++ ++|+..|++..+. +...+..+...+...
T Consensus 8 ~la~~~~~~g~~~~A~~~~~~aa~~-g~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~~~ 82 (452)
T 3e4b_A 8 RLANEALKRGDTVTAQQNYQQLAEL-GYSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLAAK 82 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH-TCCTGGGTCC--------------------------------CHHHHHHHHHTC
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHC-CCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHHhC
Confidence 4667788899999999999987653 3455566666777778888 8999999988864 555666666644444
Q ss_pred C-----CcccHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChh---HHHHHHHHHHhCCCCCcHhHHHHHHHHHHhcCh
Q 044770 144 G-----RRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIE---GLMKVYSDMKRSEVEPNEVSYCILATAHAVARL 215 (464)
Q Consensus 144 ~-----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~---~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~ 215 (464)
+ ++++|...|+...+.| .++ .+..|...|...+..+ ++.+.+......| +...+..+...|...+.
T Consensus 83 ~~~~~~~~~~A~~~~~~Aa~~g-~~~--A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~~ 156 (452)
T 3e4b_A 83 PGATEAEHHEAESLLKKAFANG-EGN--TLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQGT 156 (452)
T ss_dssp --CCHHHHHHHHHHHHHHHHTT-CSS--CHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHTC
T ss_pred CCCCCcCHHHHHHHHHHHHHCC-CHH--HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCC
Confidence 4 6789999999999876 333 6667777777666544 3555555555443 34566677777888886
Q ss_pred hhHHHHHHHHHHhccCCCChhhHHHHHHHHHhhc---ChhhHHHHHHHhccCCCCchhhHHHHHHHhhcc----CChHHH
Q 044770 216 YTVAETYVEALEKSMTGNNWSTLDVLIILYGYLA---KGKDLERIWATVQELPNVRSKSYVLAIEAFGRI----AQVSRA 288 (464)
Q Consensus 216 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~----g~~~~a 288 (464)
++++......+.+.-...++..+..+...|...| +.++|.+.++......+.....+..+...|... +++++|
T Consensus 157 ~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A 236 (452)
T 3e4b_A 157 YDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTA 236 (452)
T ss_dssp GGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHH
T ss_pred cccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHH
Confidence 6665555444444334445558888889999999 899999999999888888876667788888765 799999
Q ss_pred HHHHHHHHhccccCChhhHHHHHHH-H--HhcCChhHHHHHHHHHHhCCCCccHHHHHHHHHHHHhcC-----ChHHHHH
Q 044770 289 EELWLEMQSVKQLKATEQYNSVISV-Y--CKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSN-----LVEEGFK 360 (464)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~li~~-~--~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~-----~~~~a~~ 360 (464)
...|++.. . -++..+..+... + ...+++++|..+|++..+.| +...+..+...|. .| ++++|..
T Consensus 237 ~~~~~~aa-~---g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~ 308 (452)
T 3e4b_A 237 QALLEKIA-P---GYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEA 308 (452)
T ss_dssp HHHHHHHG-G---GSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHH
T ss_pred HHHHHHHc-C---CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHH
Confidence 99999988 3 355677777776 4 46899999999999999877 5666666766666 45 9999999
Q ss_pred HHHHhHHHHhhhhhcCCCCcHHHHHHHHHHHHh----cCChhhHHHHHHHHHHcCCCCcHHHHHHHHHHHHHc-C---C-
Q 044770 361 ALELGMKLITTKKVRSSTPWLETTLSIIEIFAE----KGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKA-K---I- 431 (464)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~-g---~- 431 (464)
.|+.+ . .-+...+..|...|.. ..++++|...|++..+.|. ......|-..|..- | +
T Consensus 309 ~~~~A-------a----~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~G~g~~~d~ 374 (452)
T 3e4b_A 309 HFEKA-------V----GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQ---NSADFAIAQLFSQGKGTKPDP 374 (452)
T ss_dssp HHHTT-------T----TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTC---TTHHHHHHHHHHSCTTBCCCH
T ss_pred HHHHH-------h----CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhCh---HHHHHHHHHHHHhCCCCCCCH
Confidence 99988 3 4456667778777776 3489999999999998774 33455555555532 1 2
Q ss_pred -ChhHHHHHHHhCCC
Q 044770 432 -NDPNLLRRMILGGA 445 (464)
Q Consensus 432 -~a~~~~~~m~~~~~ 445 (464)
.|..+|..-.+.|.
T Consensus 375 ~~A~~~~~~A~~~g~ 389 (452)
T 3e4b_A 375 LNAYVFSQLAKAQDT 389 (452)
T ss_dssp HHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHCCC
Confidence 17777777777663
No 52
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.61 E-value=2.6e-13 Score=122.20 Aligned_cols=230 Identities=10% Similarity=0.033 Sum_probs=170.0
Q ss_pred hhHHHHHHHHHhhcChHHHHHHhhhcCCCCC-chhHHHHHHHHHHhhCc-HHHHHHHHHHHHHcCCCCchhhHHHHHHHh
Q 044770 63 LDYSYLLEFTIKNHGISQGEKLFCCIPKDYQ-NELLYNNLVIACLDKGV-IKLSLEYMKKMRVLGHSISYLVFNRLIILN 140 (464)
Q Consensus 63 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~li~~~~~~~~-~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~ 140 (464)
..|..+...+...|++++|+..|+++....| +..+|+.+...+...|+ +++|+..|++.++.. +-+...|..+..++
T Consensus 98 ~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g~~~ 176 (382)
T 2h6f_A 98 DVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRVLV 176 (382)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHH
Confidence 3566777777888888888888888776634 56778888888888886 888888888888764 33667788888888
Q ss_pred cCCCCcccHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCcHhHHHHHHHHHHh-cChhhHH
Q 044770 141 SSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAV-ARLYTVA 219 (464)
Q Consensus 141 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~-~~~~~~a 219 (464)
...|++++|+..|+++++.. +-+...|..+..++.+.|++++|+..|+++.+... -+...|+.+..++.+ .|..++|
T Consensus 177 ~~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P-~~~~a~~~lg~~l~~l~~~~~eA 254 (382)
T 2h6f_A 177 EWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDV-RNNSVWNQRYFVISNTTGYNDRA 254 (382)
T ss_dssp HHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCSCSHH
T ss_pred HHccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhcCcchHH
Confidence 88888888888888888765 55677788888888888888888888888877642 256777878777777 5554666
Q ss_pred -----HHHHHHHHhccCCCChhhHHHHHHHHHhhc--ChhhHHHHHHHhccCCCCchhhHHHHHHHhhccC---------
Q 044770 220 -----ETYVEALEKSMTGNNWSTLDVLIILYGYLA--KGKDLERIWATVQELPNVRSKSYVLAIEAFGRIA--------- 283 (464)
Q Consensus 220 -----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--------- 283 (464)
+..+++.... .+.+...|..+..++...| +.+++.+.+..+ ...+.+...+..+...|.+.|
T Consensus 255 ~~~~el~~~~~Al~l-~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~~~~~~~~~~ 332 (382)
T 2h6f_A 255 VLEREVQYTLEMIKL-VPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDMLENQCDNKED 332 (382)
T ss_dssp HHHHHHHHHHHHHHH-STTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHTTCSSHHH
T ss_pred HHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhcccccchHH
Confidence 4777777665 2345667777777777777 577888877777 555556667777788887764
Q ss_pred ChHHHHHHHHHH-Hh
Q 044770 284 QVSRAEELWLEM-QS 297 (464)
Q Consensus 284 ~~~~a~~~~~~~-~~ 297 (464)
..++|.++|+++ .+
T Consensus 333 ~~~~A~~~~~~l~~~ 347 (382)
T 2h6f_A 333 ILNKALELCEILAKE 347 (382)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHH
Confidence 247888888887 44
No 53
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.60 E-value=3.3e-12 Score=110.53 Aligned_cols=223 Identities=8% Similarity=-0.032 Sum_probs=140.6
Q ss_pred hhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCcHhHHHHHHHHHHh----cChhhHHHHHHHHHHhccCCCChhhHHH
Q 044770 165 VSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAV----ARLYTVAETYVEALEKSMTGNNWSTLDV 240 (464)
Q Consensus 165 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 240 (464)
..++..+...+...|++++|...|++..+. -+...+..+...+.. .+++++|...|++..+.+ +...+..
T Consensus 6 ~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~ 79 (273)
T 1ouv_A 6 PKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHL 79 (273)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHH
T ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHHH
Confidence 334445555555555666666666555542 133445555555555 556666666666555543 3445555
Q ss_pred HHHHHHh----hcChhhHHHHHHHhccCCCCchhhHHHHHHHhhc----cCChHHHHHHHHHHHhccccCChhhHHHHHH
Q 044770 241 LIILYGY----LAKGKDLERIWATVQELPNVRSKSYVLAIEAFGR----IAQVSRAEELWLEMQSVKQLKATEQYNSVIS 312 (464)
Q Consensus 241 l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 312 (464)
+...+.. .++.++|...++...... +...+..+...|.. .+++++|...|++..+.+ +...+..+..
T Consensus 80 lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~ 154 (273)
T 1ouv_A 80 LGNLYYSGQGVSQNTNKALQYYSKACDLK--YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTILGS 154 (273)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred HHHHHhCCCCcccCHHHHHHHHHHHHHcC--CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHHHH
Confidence 5555555 555555555555554432 33446666666666 777788888887777754 4456667777
Q ss_pred HHHh----cCChhHHHHHHHHHHhCCCCccHHHHHHHHHHHHh----cCChHHHHHHHHHhHHHHhhhhhcCCCCcHHHH
Q 044770 313 VYCK----NGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFK----SNLVEEGFKALELGMKLITTKKVRSSTPWLETT 384 (464)
Q Consensus 313 ~~~~----~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~p~~~~~ 384 (464)
.|.. .+++++|+..|++..+.+ +...+..+...+.. .+++++|...++.+.+ .+ | ...+
T Consensus 155 ~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~-------~~--~-~~a~ 221 (273)
T 1ouv_A 155 LYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACE-------LE--N-GGGC 221 (273)
T ss_dssp HHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHH-------TT--C-HHHH
T ss_pred HHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHh-------CC--C-HHHH
Confidence 7776 778888888888877754 45566667777777 7888888888887732 21 2 4556
Q ss_pred HHHHHHHHh----cCChhhHHHHHHHHHHcC
Q 044770 385 LSIIEIFAE----KGDVGNAENLFEELKKAN 411 (464)
Q Consensus 385 ~~li~~~~~----~g~~~~A~~~~~~m~~~~ 411 (464)
..+...|.+ .|++++|...|++..+.|
T Consensus 222 ~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 222 FNLGAMQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp HHHHHHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 677777777 788888888888887765
No 54
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.60 E-value=2.2e-14 Score=132.31 Aligned_cols=283 Identities=8% Similarity=-0.074 Sum_probs=189.8
Q ss_pred hhHHHHHHHHHHhhCcHHHHHHHHHHHHHcCCCCch----hhHHHHHHHhcCCCCcccHHHHHHHHHhC----C-CCCCh
Q 044770 95 ELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISY----LVFNRLIILNSSPGRRKTIPNILRQMKAD----K-VAPHV 165 (464)
Q Consensus 95 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~-~~~~~ 165 (464)
...+..+...+...|++++|+..|++..+.+.. +. ..+..+...+...|++++|...+++..+. + .+...
T Consensus 48 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 126 (411)
T 4a1s_A 48 CLELALEGERLCNAGDCRAGVAFFQAAIQAGTE-DLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEA 126 (411)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHHhccc-ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHH
Confidence 345556677788888999999999888886322 22 46777777788888888888888877652 1 12234
Q ss_pred hhHHHHHHHHHccCChhHHHHHHHHHHhC----CC-CCcHhHHHHHHHHHHhcCh-----------------hhHHHHHH
Q 044770 166 STFHILMKIEANDHNIEGLMKVYSDMKRS----EV-EPNEVSYCILATAHAVARL-----------------YTVAETYV 223 (464)
Q Consensus 166 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~----~~-~p~~~~~~~li~~~~~~~~-----------------~~~a~~~~ 223 (464)
.++..+...|...|++++|...|++..+. +- .....++..+...+...|+ +++|...+
T Consensus 127 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~ 206 (411)
T 4a1s_A 127 KSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFY 206 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHH
Confidence 56667777777888888888887776542 10 1123456666666777777 56665555
Q ss_pred HHHHhccCCCChhhHHHHHHHHHhhcChhhHHHHHHHhccCCCCchhhHHHHHHHhhccCChHHHHHHHHHHHhcccc-C
Q 044770 224 EALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQL-K 302 (464)
Q Consensus 224 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~ 302 (464)
++..... ... .........+..+...|...|++++|...+++..+.... +
T Consensus 207 ~~al~~~----------------------------~~~-~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 257 (411)
T 4a1s_A 207 QENLKLM----------------------------RDL-GDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFG 257 (411)
T ss_dssp HHHHHHH----------------------------HHH-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHH----------------------------HHc-CCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcC
Confidence 5543210 000 000111234667777788888888888888776653211 1
Q ss_pred C----hhhHHHHHHHHHhcCChhHHHHHHHHHHhCC----CC-ccHHHHHHHHHHHHhcCChHHHHHHHHHhHHHHhhhh
Q 044770 303 A----TEQYNSVISVYCKNGFIDKASGLLKEMSMNG----CK-PNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKK 373 (464)
Q Consensus 303 ~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g----~~-p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 373 (464)
+ ...+..+...|...|++++|...+++..+.. .. ....++..+...+...|++++|...++++++....
T Consensus 258 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~-- 335 (411)
T 4a1s_A 258 DRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQE-- 335 (411)
T ss_dssp CHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH--
T ss_pred CcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH--
Confidence 1 2367888888999999999999998876521 11 12466778888899999999999999999776443
Q ss_pred hcCCC-CcHHHHHHHHHHHHhcCChhhHHHHHHHHHHc
Q 044770 374 VRSST-PWLETTLSIIEIFAEKGDVGNAENLFEELKKA 410 (464)
Q Consensus 374 ~~~~~-p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 410 (464)
.+.. ....++..+...|.+.|++++|...+++..+.
T Consensus 336 -~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 372 (411)
T 4a1s_A 336 -LGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQL 372 (411)
T ss_dssp -HTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred -CCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 1211 23456778999999999999999999998874
No 55
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.60 E-value=6.9e-13 Score=111.01 Aligned_cols=206 Identities=12% Similarity=-0.031 Sum_probs=111.7
Q ss_pred HHHHHHHHHhcChhhHHHHHHHHHHhccCCCChhhHHHHHHHHHhhcChhhHHHHHHHhccCCCCchhhHHHHHHHhhcc
Q 044770 203 YCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRI 282 (464)
Q Consensus 203 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 282 (464)
+..+...+...|++++|...++++.+. .+.+...+..+...+...|++++|...++......+.+...+..+...+...
T Consensus 11 ~~~~~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~ 89 (225)
T 2vq2_A 11 KTQLAMEYMRGQDYRQATASIEDALKS-DPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCGR 89 (225)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHh-CccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHh
Confidence 333344444444444444444444332 1122333333344444444444444444443333333334455566666666
Q ss_pred -CChHHHHHHHHHHHhccccC-ChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCccHHHHHHHHHHHHhcCChHHHHH
Q 044770 283 -AQVSRAEELWLEMQSVKQLK-ATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFK 360 (464)
Q Consensus 283 -g~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~ 360 (464)
|++++|...++.+.+....| +...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|..
T Consensus 90 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~ 168 (225)
T 2vq2_A 90 LNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLAGQLGDADY 168 (225)
T ss_dssp TCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred cCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHcCCHHHHHH
Confidence 66777777766666521222 24556666777777777777777777776642 1235666666777777777777777
Q ss_pred HHHHhHHHHhhhhhcCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCcHHHH
Q 044770 361 ALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVY 419 (464)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~ 419 (464)
.++.+++. ....+...+..+...+...|+.++|..+++.+.+.. |+....
T Consensus 169 ~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~--p~~~~~ 218 (225)
T 2vq2_A 169 YFKKYQSR-------VEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANF--PYSEEL 218 (225)
T ss_dssp HHHHHHHH-------HCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHH
T ss_pred HHHHHHHh-------CCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC--CCCHHH
Confidence 77776432 111344455666666677777777777777776543 444433
No 56
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.60 E-value=4.5e-13 Score=112.13 Aligned_cols=134 Identities=8% Similarity=-0.013 Sum_probs=83.0
Q ss_pred chhHHHHHHHHHHhhCcHHHHHHHHHHHHHcCCCCchhhHHHHHHHhcCCCCcccHHHHHHHHHhCCCCCChhhHHHHHH
Q 044770 94 NELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMK 173 (464)
Q Consensus 94 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 173 (464)
+...|..+...+...|++++|++.|+++.+.. +.+...+..+...+...|++++|...++++.+.. +.+..++..+..
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~ 84 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGW 84 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHH
Confidence 44566666667777777777777777666643 3345566666666666666666666666666543 344556666666
Q ss_pred HHHcc-CChhHHHHHHHHHHhCCCCCc-HhHHHHHHHHHHhcChhhHHHHHHHHHHhc
Q 044770 174 IEAND-HNIEGLMKVYSDMKRSEVEPN-EVSYCILATAHAVARLYTVAETYVEALEKS 229 (464)
Q Consensus 174 ~~~~~-~~~~~a~~~~~~m~~~~~~p~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 229 (464)
.+... |++++|...++++.+.+..|+ ...+..+..++...|++++|...++++.+.
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 142 (225)
T 2vq2_A 85 FLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAA 142 (225)
T ss_dssp HHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 66666 777777777766665222222 445556666666666666666666666554
No 57
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.59 E-value=3.7e-14 Score=130.40 Aligned_cols=301 Identities=10% Similarity=-0.054 Sum_probs=226.2
Q ss_pred CCchhhHHHHHHHhcCCCCcccHHHHHHHHHhCCCCCC----hhhHHHHHHHHHccCChhHHHHHHHHHHhC----CCCC
Q 044770 127 SISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPH----VSTFHILMKIEANDHNIEGLMKVYSDMKRS----EVEP 198 (464)
Q Consensus 127 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~----~~~p 198 (464)
.+....+......+...|++++|...|+++.+.+ +.+ ..++..+...+...|++++|...+++.... +-.|
T Consensus 6 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 84 (406)
T 3sf4_A 6 EASCLELALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQL 84 (406)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccH
Confidence 3455566777888999999999999999998863 233 357888899999999999999999986532 2122
Q ss_pred -cHhHHHHHHHHHHhcChhhHHHHHHHHHHhccCC-CC----hhhHHHHHHHHHhhcC--------------------hh
Q 044770 199 -NEVSYCILATAHAVARLYTVAETYVEALEKSMTG-NN----WSTLDVLIILYGYLAK--------------------GK 252 (464)
Q Consensus 199 -~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~--------------------~~ 252 (464)
...++..+...+...|++++|...+++....... ++ ..++..+...+...|+ ++
T Consensus 85 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~ 164 (406)
T 3sf4_A 85 GEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQ 164 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHH
Confidence 2456778888899999999999999987654211 12 3477888899999999 99
Q ss_pred hHHHHHHHhcc----C--CCCchhhHHHHHHHhhccCChHHHHHHHHHHHhcccc-CC----hhhHHHHHHHHHhcCChh
Q 044770 253 DLERIWATVQE----L--PNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQL-KA----TEQYNSVISVYCKNGFID 321 (464)
Q Consensus 253 ~a~~~~~~~~~----~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~----~~~~~~li~~~~~~~~~~ 321 (464)
.|...++.... . .+.....+..+...|...|++++|...+++..+.... ++ ..++..+...|...|+++
T Consensus 165 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 244 (406)
T 3sf4_A 165 AAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFE 244 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChH
Confidence 99988887654 1 2223346788899999999999999999988753211 11 237888999999999999
Q ss_pred HHHHHHHHHHhC----CCCcc-HHHHHHHHHHHHhcCChHHHHHHHHHhHHHHhhhhhcCCCC-cHHHHHHHHHHHHhcC
Q 044770 322 KASGLLKEMSMN----GCKPN-AITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTP-WLETTLSIIEIFAEKG 395 (464)
Q Consensus 322 ~a~~~~~~m~~~----g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g 395 (464)
+|...+++..+. +..+. ..++..+...+...|++++|...++.+++.... .+..+ ...++..+...|...|
T Consensus 245 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~---~~~~~~~~~~~~~la~~~~~~g 321 (406)
T 3sf4_A 245 TASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQE---LNDRIGEGRACWSLGNAYTALG 321 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHh---cCCcHHHHHHHHHHHHHHHHcC
Confidence 999999988752 11111 457778888899999999999999999765432 22222 2556788999999999
Q ss_pred ChhhHHHHHHHHHHc----CCCCc-HHHHHHHHHHHHHcCC
Q 044770 396 DVGNAENLFEELKKA----NYTKY-TFVYNTLIKAYVKAKI 431 (464)
Q Consensus 396 ~~~~A~~~~~~m~~~----~~~p~-~~~~~~li~~~~~~g~ 431 (464)
++++|...+++..+. +-.+. ..++..+...+...|+
T Consensus 322 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 362 (406)
T 3sf4_A 322 NHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGL 362 (406)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhH
Confidence 999999999987642 22222 3377788888888875
No 58
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.59 E-value=4.5e-14 Score=119.90 Aligned_cols=195 Identities=8% Similarity=0.007 Sum_probs=84.1
Q ss_pred hhHHHHHHHHHhhcChHHHHHHhhhcCCC-CCchhHHHHHHHHHHhhCcHHHHHHHHHHHHHcCCCCchhhHHHHHHHhc
Q 044770 63 LDYSYLLEFTIKNHGISQGEKLFCCIPKD-YQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNS 141 (464)
Q Consensus 63 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~ 141 (464)
..+..+...+...|++++|...|+++... +.+...+..+...+...|++++|+..|+++.+.. +.+..++..+...+.
T Consensus 24 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~ 102 (243)
T 2q7f_A 24 MTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGNVYV 102 (243)
T ss_dssp ------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHHHHH
Confidence 34444555555555555555555555443 2234555555555555555555555555555442 223444455555555
Q ss_pred CCCCcccHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCcHhHHHHHHHHHHhcChhhHHHH
Q 044770 142 SPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAET 221 (464)
Q Consensus 142 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~ 221 (464)
..|++++|...++++.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..+...+.+.|++++|..
T Consensus 103 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~ 180 (243)
T 2q7f_A 103 VKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLANEGMLDEALS 180 (243)
T ss_dssp HTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHHHHH
T ss_pred HhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHcCCHHHHHH
Confidence 5555555555555554432 3334444455555555555555555555544432 1234444444455555555555555
Q ss_pred HHHHHHhccCCCChhhHHHHHHHHHhhcChhhHHHHHHHh
Q 044770 222 YVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATV 261 (464)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 261 (464)
.++++.+.. +.+..++..+..++...|+.++|...++.+
T Consensus 181 ~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~ 219 (243)
T 2q7f_A 181 QFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKA 219 (243)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHH
T ss_pred HHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 555544431 122333333334444444444444443333
No 59
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.59 E-value=1.2e-12 Score=113.29 Aligned_cols=223 Identities=12% Similarity=-0.004 Sum_probs=127.1
Q ss_pred chhHHHHHHHHHHhhCcHHHHHHHHHHHHHcCCCCchhhHHHHHHHhcC----CCCcccHHHHHHHHHhCCCCCChhhHH
Q 044770 94 NELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSS----PGRRKTIPNILRQMKADKVAPHVSTFH 169 (464)
Q Consensus 94 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~ 169 (464)
+..++..+...+...|++++|+..|++..+.+ +...+..+...+.. .+++++|...|++..+.+ +...+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~ 78 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH 78 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 34455556666666666666666666666522 34455555555655 666666666666666543 455555
Q ss_pred HHHHHHHc----cCChhHHHHHHHHHHhCCCCCcHhHHHHHHHHHHh----cChhhHHHHHHHHHHhccCCCChhhHHHH
Q 044770 170 ILMKIEAN----DHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAV----ARLYTVAETYVEALEKSMTGNNWSTLDVL 241 (464)
Q Consensus 170 ~l~~~~~~----~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 241 (464)
.+...|.. .+++++|...|++..+.+ +...+..+...|.. .+++++|...|++..+.+ +...+..+
T Consensus 79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l 152 (273)
T 1ouv_A 79 LLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTIL 152 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred HHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHH
Confidence 66666666 666666666666666543 45556666666666 666666666666665543 33444444
Q ss_pred HHHHHh----hcChhhHHHHHHHhccCCCCchhhHHHHHHHhhc----cCChHHHHHHHHHHHhccccCChhhHHHHHHH
Q 044770 242 IILYGY----LAKGKDLERIWATVQELPNVRSKSYVLAIEAFGR----IAQVSRAEELWLEMQSVKQLKATEQYNSVISV 313 (464)
Q Consensus 242 ~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 313 (464)
...+.. .++.++|...++...+.. +...+..+...|.. .+++++|...|++..+.+ +...+..+...
T Consensus 153 g~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l~~~ 227 (273)
T 1ouv_A 153 GSLYDAGRGTPKDLKKALASYDKACDLK--DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLGAM 227 (273)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHH
T ss_pred HHHHHcCCCCCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CHHHHHHHHHH
Confidence 444444 445555555555444332 12234455555555 566666666666655543 13445555555
Q ss_pred HHh----cCChhHHHHHHHHHHhC
Q 044770 314 YCK----NGFIDKASGLLKEMSMN 333 (464)
Q Consensus 314 ~~~----~~~~~~a~~~~~~m~~~ 333 (464)
|.. .+++++|...|++..+.
T Consensus 228 ~~~g~~~~~~~~~A~~~~~~a~~~ 251 (273)
T 1ouv_A 228 QYNGEGVTRNEKQAIENFKKGCKL 251 (273)
T ss_dssp HHTTSSSSCCSTTHHHHHHHHHHH
T ss_pred HHcCCCcccCHHHHHHHHHHHHHc
Confidence 555 56666666666666554
No 60
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.59 E-value=1.2e-13 Score=117.23 Aligned_cols=199 Identities=10% Similarity=0.048 Sum_probs=104.4
Q ss_pred hhHHHHHHHhcCCCCcccHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCcHhHHHHHHHHH
Q 044770 131 LVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAH 210 (464)
Q Consensus 131 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~ 210 (464)
..|..+...+...|++++|...|+++.+.. +.+...+..+...+...|++++|...|++..+.. +.+...+..+...+
T Consensus 24 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~ 101 (243)
T 2q7f_A 24 MTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGNVY 101 (243)
T ss_dssp ------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHHHH
Confidence 344444455555555555555555555432 3344555555555555666666666665555432 22344555555555
Q ss_pred HhcChhhHHHHHHHHHHhccCCCChhhHHHHHHHHHhhcChhhHHHHHHHhccCCCCchhhHHHHHHHhhccCChHHHHH
Q 044770 211 AVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEE 290 (464)
Q Consensus 211 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 290 (464)
...|++++|...++++.+.. +.+...+..+...+...|++++|...++.+....+.+...+..+...+...|++++|..
T Consensus 102 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 180 (243)
T 2q7f_A 102 VVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEALS 180 (243)
T ss_dssp HHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHHHHH
Confidence 55666666666665555442 23344555555555555555555555555555444444556666666777777777777
Q ss_pred HHHHHHhccccCChhhHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 044770 291 LWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMN 333 (464)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 333 (464)
.|+.+.+.. +.+..+|..+...|...|++++|...++++.+.
T Consensus 181 ~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 222 (243)
T 2q7f_A 181 QFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAIDI 222 (243)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Confidence 777666532 234556677777777777777777777777663
No 61
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.58 E-value=6.6e-14 Score=125.03 Aligned_cols=283 Identities=8% Similarity=-0.060 Sum_probs=187.6
Q ss_pred hHHHHHHHHHHhhCcHHHHHHHHHHHHHcCCCCc----hhhHHHHHHHhcCCCCcccHHHHHHHHHhC----CCC-CChh
Q 044770 96 LLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSIS----YLVFNRLIILNSSPGRRKTIPNILRQMKAD----KVA-PHVS 166 (464)
Q Consensus 96 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~ 166 (464)
..+......+...|++++|+..|+++.+.... + ...+..+...+...|++++|...+++..+. +-. ....
T Consensus 6 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 84 (338)
T 3ro2_A 6 LELALEGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAK 84 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhCcc-cHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHH
Confidence 34555667788888999999999888876322 2 356777777888888888888888876542 111 1244
Q ss_pred hHHHHHHHHHccCChhHHHHHHHHHHhCCC-CCc----HhHHHHHHHHHHhcCh--------------------hhHHHH
Q 044770 167 TFHILMKIEANDHNIEGLMKVYSDMKRSEV-EPN----EVSYCILATAHAVARL--------------------YTVAET 221 (464)
Q Consensus 167 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~-~p~----~~~~~~li~~~~~~~~--------------------~~~a~~ 221 (464)
++..+...+...|++++|...+++..+... .++ ..++..+...+...|+ +++|..
T Consensus 85 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~ 164 (338)
T 3ro2_A 85 ASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVD 164 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHH
Confidence 566777777788888888888777654210 111 2355666666777777 566666
Q ss_pred HHHHHHhccCCCChhhHHHHHHHHHhhcChhhHHHHHHHhccCCCCchhhHHHHHHHhhccCChHHHHHHHHHHHhcccc
Q 044770 222 YVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQL 301 (464)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 301 (464)
.+++..... ...+ ........+..+...+...|++++|...+++..+....
T Consensus 165 ~~~~a~~~~---------------~~~~--------------~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~ 215 (338)
T 3ro2_A 165 LYEENLSLV---------------TALG--------------DRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKE 215 (338)
T ss_dssp HHHHHHHHH---------------HHHT--------------CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH---------------HhcC--------------CHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHh
Confidence 555543210 0000 00111224666777778888888888888776642111
Q ss_pred -C----ChhhHHHHHHHHHhcCChhHHHHHHHHHHhC----CCCc-cHHHHHHHHHHHHhcCChHHHHHHHHHhHHHHhh
Q 044770 302 -K----ATEQYNSVISVYCKNGFIDKASGLLKEMSMN----GCKP-NAITYRHLALGCFKSNLVEEGFKALELGMKLITT 371 (464)
Q Consensus 302 -~----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 371 (464)
+ ...++..+...+...|++++|...+++..+. +..+ ...++..+...+...|++++|...++.+++....
T Consensus 216 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 295 (338)
T 3ro2_A 216 FGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQE 295 (338)
T ss_dssp HTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred cCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHh
Confidence 1 1336788888899999999999999887652 1111 1456777888899999999999999999765432
Q ss_pred hhhcCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHHHc
Q 044770 372 KKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKA 410 (464)
Q Consensus 372 ~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 410 (464)
. ........++..+...|.+.|++++|...+++..+.
T Consensus 296 ~--~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 332 (338)
T 3ro2_A 296 L--KDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 332 (338)
T ss_dssp H--TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC
T ss_pred c--CCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 1 111123456778999999999999999999988864
No 62
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.55 E-value=6.3e-14 Score=129.16 Aligned_cols=276 Identities=11% Similarity=-0.031 Sum_probs=197.8
Q ss_pred hhHHHHHHHHHhhcChHHHHHHhhhcCCCCCc-h----hHHHHHHHHHHhhCcHHHHHHHHHHHHHc----C-CCCchhh
Q 044770 63 LDYSYLLEFTIKNHGISQGEKLFCCIPKDYQN-E----LLYNNLVIACLDKGVIKLSLEYMKKMRVL----G-HSISYLV 132 (464)
Q Consensus 63 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~----~~~~~li~~~~~~~~~~~a~~~~~~m~~~----~-~~~~~~~ 132 (464)
..+..+...+...|++++|...|+++....|+ . ..|..+...+...|++++|+..+++..+. + .+....+
T Consensus 49 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 128 (411)
T 4a1s_A 49 LELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKS 128 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHH
Confidence 34556677888999999999999988766343 2 47889999999999999999999988763 1 1234567
Q ss_pred HHHHHHHhcCCCCcccHHHHHHHHHhC----C-CCCChhhHHHHHHHHHccCC-----------------hhHHHHHHHH
Q 044770 133 FNRLIILNSSPGRRKTIPNILRQMKAD----K-VAPHVSTFHILMKIEANDHN-----------------IEGLMKVYSD 190 (464)
Q Consensus 133 ~~~l~~~~~~~~~~~~a~~~~~~~~~~----~-~~~~~~~~~~l~~~~~~~~~-----------------~~~a~~~~~~ 190 (464)
+..+...+...|++++|...+++..+. + .+....++..+...|...|+ +++|...+++
T Consensus 129 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~ 208 (411)
T 4a1s_A 129 SGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQE 208 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHH
Confidence 888889999999999999999998763 1 12234578888899999999 8999988887
Q ss_pred HHhC----CCCC-cHhHHHHHHHHHHhcChhhHHHHHHHHHHhccCC-CChhhHHHHHHHHHhhcChhhHHHHHHHhccC
Q 044770 191 MKRS----EVEP-NEVSYCILATAHAVARLYTVAETYVEALEKSMTG-NNWSTLDVLIILYGYLAKGKDLERIWATVQEL 264 (464)
Q Consensus 191 m~~~----~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 264 (464)
..+. +..+ ...++..+...+...|++++|...+++..+.... ++..
T Consensus 209 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~---------------------------- 260 (411)
T 4a1s_A 209 NLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRA---------------------------- 260 (411)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHH----------------------------
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcH----------------------------
Confidence 6532 1111 2346667777788888888888888776553211 0100
Q ss_pred CCCchhhHHHHHHHhhccCChHHHHHHHHHHHhcccc-----CChhhHHHHHHHHHhcCChhHHHHHHHHHHhCC----C
Q 044770 265 PNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQL-----KATEQYNSVISVYCKNGFIDKASGLLKEMSMNG----C 335 (464)
Q Consensus 265 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g----~ 335 (464)
.....+..+...|...|++++|...|++..+.... ....++..+...|...|++++|...+++..+.. .
T Consensus 261 --~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 338 (411)
T 4a1s_A 261 --AERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGD 338 (411)
T ss_dssp --HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC
T ss_pred --HHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCC
Confidence 00123566677777788888888877776642211 114567778888888999999999888876521 1
Q ss_pred Cc-cHHHHHHHHHHHHhcCChHHHHHHHHHhHHH
Q 044770 336 KP-NAITYRHLALGCFKSNLVEEGFKALELGMKL 368 (464)
Q Consensus 336 ~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 368 (464)
.+ ...++..+...+...|++++|...+++++++
T Consensus 339 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 372 (411)
T 4a1s_A 339 RIGEARACWSLGNAHSAIGGHERALKYAEQHLQL 372 (411)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 11 1346777888889999999999999998653
No 63
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.53 E-value=3.5e-13 Score=122.89 Aligned_cols=302 Identities=10% Similarity=-0.010 Sum_probs=166.1
Q ss_pred HHhhcchHHHHHHHHHHHHcCCC-CCCc--hhHHHHHHH--HHhhcChHHHH-----------HHhhhcCCCCCchh---
Q 044770 36 LRKLQLNKRALEVMEWVIRERPY-RPKE--LDYSYLLEF--TIKNHGISQGE-----------KLFCCIPKDYQNEL--- 96 (464)
Q Consensus 36 ~~~~~~~~~A~~~~~~~~~~~~~-~~~~--~~~~~l~~~--~~~~g~~~~a~-----------~~~~~~~~~~~~~~--- 96 (464)
+.+.+++++|..+++.+.+..+. ..+. ..|-.++.. ..-.++++.+. +.++.+.....+..
T Consensus 22 ~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~~~~~~~~~l 101 (383)
T 3ulq_A 22 YIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEIDKKQARLTGLL 101 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHHHHHHHTHHHHHHH
T ss_pred HHHHcCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHHHHHhcCCCchhHH
Confidence 45789999999999998764321 1222 222333321 11223334444 55555433211111
Q ss_pred ---HHHHHHHHHHhhCcHHHHHHHHHHHHHc----CCCC-chhhHHHHHHHhcCCCCcccHHHHHHHHHhC--CC----C
Q 044770 97 ---LYNNLVIACLDKGVIKLSLEYMKKMRVL----GHSI-SYLVFNRLIILNSSPGRRKTIPNILRQMKAD--KV----A 162 (464)
Q Consensus 97 ---~~~~li~~~~~~~~~~~a~~~~~~m~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~----~ 162 (464)
.+......+...|++++|+..|++..+. +-.+ ...++..+...+...|+++.|...+++..+. .. +
T Consensus 102 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~ 181 (383)
T 3ulq_A 102 EYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNI 181 (383)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchH
Confidence 1222455667778888888888777653 1111 2345666666777777777777777666542 10 0
Q ss_pred CChhhHHHHHHHHHccCChhHHHHHHHHHHhC----CCCC-cHhHHHHHHHHHHhcChhhHHHHHHHHHHhccCCCChhh
Q 044770 163 PHVSTFHILMKIEANDHNIEGLMKVYSDMKRS----EVEP-NEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWST 237 (464)
Q Consensus 163 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~----~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 237 (464)
....+++.+...|...|++++|...|++..+. +-.+ ...++..+..+|...|++++|...+++..+.....
T Consensus 182 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~---- 257 (383)
T 3ulq_A 182 RLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEES---- 257 (383)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT----
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhh----
Confidence 11235555666666666666666666665432 1000 11245555555666666666666665554310000
Q ss_pred HHHHHHHHHhhcChhhHHHHHHHhccCC-CCchhhHHHHHHHhhccCChHHHHHHHHHHHhcc----ccCChhhHHHHHH
Q 044770 238 LDVLIILYGYLAKGKDLERIWATVQELP-NVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVK----QLKATEQYNSVIS 312 (464)
Q Consensus 238 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~----~~~~~~~~~~li~ 312 (464)
.. +....++..+...|.+.|++++|...+++..+.. .+.....+..+..
T Consensus 258 --------------------------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ 311 (383)
T 3ulq_A 258 --------------------------NILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKS 311 (383)
T ss_dssp --------------------------TCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred --------------------------ccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 11 2223345566666666777777777766655421 1112223556666
Q ss_pred HHHhcCC---hhHHHHHHHHHHhCCCCcc-HHHHHHHHHHHHhcCChHHHHHHHHHhHHHHh
Q 044770 313 VYCKNGF---IDKASGLLKEMSMNGCKPN-AITYRHLALGCFKSNLVEEGFKALELGMKLIT 370 (464)
Q Consensus 313 ~~~~~~~---~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 370 (464)
.+...|+ +++|+.++++. +..|+ ...+..+...|...|++++|...++.+++...
T Consensus 312 ~~~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~ 370 (383)
T 3ulq_A 312 LYLSGPDEEAIQGFFDFLESK---MLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQVRQ 370 (383)
T ss_dssp HHTSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHT
T ss_pred HHhCCCcHHHHHHHHHHHHHC---cCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 7777777 66666666654 23333 34566677778888888888888888877644
No 64
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.53 E-value=2.1e-12 Score=117.74 Aligned_cols=229 Identities=10% Similarity=0.053 Sum_probs=140.8
Q ss_pred HHHHHHccCChhHHHHHHHHHHhC----CCCC-cHhHHHHHHHHHHhcChhhHHHHHHHHHHhccCCC------ChhhHH
Q 044770 171 LMKIEANDHNIEGLMKVYSDMKRS----EVEP-NEVSYCILATAHAVARLYTVAETYVEALEKSMTGN------NWSTLD 239 (464)
Q Consensus 171 l~~~~~~~~~~~~a~~~~~~m~~~----~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~------~~~~~~ 239 (464)
....+...|++++|...|++..+. +-.+ ...++..+...+...|++++|...+++..+..... ...++.
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 445566778888888888877653 1111 23566777777888888888888887765432111 124556
Q ss_pred HHHHHHHhhcChhhHHHHHHHhccC------CCCchhhHHHHHHHhhccCChHHHHHHHHHHHhc----cc-cCChhhHH
Q 044770 240 VLIILYGYLAKGKDLERIWATVQEL------PNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSV----KQ-LKATEQYN 308 (464)
Q Consensus 240 ~l~~~~~~~~~~~~a~~~~~~~~~~------~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~-~~~~~~~~ 308 (464)
.+..+|...|++++|...++..... ......++..+...|...|++++|...|++..+. +. +....++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 6666677777777777766655431 1111235667777777778888887777776652 22 33355677
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCC---CCc-cHHHHHHHHHHHHhcCC---hHHHHHHHHHhHHHHhhhhhcCCCC-c
Q 044770 309 SVISVYCKNGFIDKASGLLKEMSMNG---CKP-NAITYRHLALGCFKSNL---VEEGFKALELGMKLITTKKVRSSTP-W 380 (464)
Q Consensus 309 ~li~~~~~~~~~~~a~~~~~~m~~~g---~~p-~~~~~~~ll~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~p-~ 380 (464)
.+...|...|++++|...+++..+.. -.| ....+..+...+...|+ +++|+.+++.. +..| .
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~----------~~~~~~ 338 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK----------MLYADL 338 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT----------TCHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC----------cCHHHH
Confidence 77777777888888887777765421 011 12234455555666676 55555555543 2222 2
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHHHHH
Q 044770 381 LETTLSIIEIFAEKGDVGNAENLFEELKK 409 (464)
Q Consensus 381 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 409 (464)
...+..+...|...|++++|...+++..+
T Consensus 339 ~~~~~~la~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 339 EDFAIDVAKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 34566777777778888888777777654
No 65
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.53 E-value=2.8e-13 Score=120.93 Aligned_cols=275 Identities=12% Similarity=0.004 Sum_probs=188.6
Q ss_pred hhHHHHHHHHHhhcChHHHHHHhhhcCCCCCc-----hhHHHHHHHHHHhhCcHHHHHHHHHHHHHc----CCC-Cchhh
Q 044770 63 LDYSYLLEFTIKNHGISQGEKLFCCIPKDYQN-----ELLYNNLVIACLDKGVIKLSLEYMKKMRVL----GHS-ISYLV 132 (464)
Q Consensus 63 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----~~~-~~~~~ 132 (464)
..+......+...|++++|...|+++....|+ ...|..+...+...|++++|+..+++..+. +.. ....+
T Consensus 6 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 85 (338)
T 3ro2_A 6 LELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKA 85 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHH
Confidence 34556677888999999999999987665332 367888999999999999999999987653 212 22567
Q ss_pred HHHHHHHhcCCCCcccHHHHHHHHHhCCC-CCC----hhhHHHHHHHHHccCC--------------------hhHHHHH
Q 044770 133 FNRLIILNSSPGRRKTIPNILRQMKADKV-APH----VSTFHILMKIEANDHN--------------------IEGLMKV 187 (464)
Q Consensus 133 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~~~--------------------~~~a~~~ 187 (464)
+..+...+...|++++|...+++..+..- .++ ..++..+...+...|+ +++|...
T Consensus 86 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~ 165 (338)
T 3ro2_A 86 SGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDL 165 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHH
Confidence 88888899999999999999999865310 112 3477888899999999 8999988
Q ss_pred HHHHHhC----CCCC-cHhHHHHHHHHHHhcChhhHHHHHHHHHHhccCC-CChhhHHHHHHHHHhhcChhhHHHHHHHh
Q 044770 188 YSDMKRS----EVEP-NEVSYCILATAHAVARLYTVAETYVEALEKSMTG-NNWSTLDVLIILYGYLAKGKDLERIWATV 261 (464)
Q Consensus 188 ~~~m~~~----~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 261 (464)
+++.... +..+ ...++..+...+...|++++|...+++..+.... ++..
T Consensus 166 ~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~------------------------- 220 (338)
T 3ro2_A 166 YEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKA------------------------- 220 (338)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHH-------------------------
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChH-------------------------
Confidence 8876532 1111 2345666777778888888888888776543110 0100
Q ss_pred ccCCCCchhhHHHHHHHhhccCChHHHHHHHHHHHhcccc-C----ChhhHHHHHHHHHhcCChhHHHHHHHHHHhC---
Q 044770 262 QELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQL-K----ATEQYNSVISVYCKNGFIDKASGLLKEMSMN--- 333 (464)
Q Consensus 262 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~--- 333 (464)
.....+..+...+...|++++|...+++..+.... + ...++..+...+...|++++|...+++..+.
T Consensus 221 -----~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 295 (338)
T 3ro2_A 221 -----AERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQE 295 (338)
T ss_dssp -----HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred -----HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHh
Confidence 01113555666666677777777777665542111 0 1446677777788888888888888776542
Q ss_pred -CCCc-cHHHHHHHHHHHHhcCChHHHHHHHHHhHH
Q 044770 334 -GCKP-NAITYRHLALGCFKSNLVEEGFKALELGMK 367 (464)
Q Consensus 334 -g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 367 (464)
+-.+ ...++..+...+...|++++|...++++++
T Consensus 296 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 331 (338)
T 3ro2_A 296 LKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 331 (338)
T ss_dssp HTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred cCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 1111 134566777778888888888888888854
No 66
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.50 E-value=1.2e-11 Score=108.83 Aligned_cols=217 Identities=7% Similarity=-0.004 Sum_probs=120.6
Q ss_pred HHHHHHHHHHHHcCCCCchhhHHHHHHHhc-------CCCCc-------ccHHHHHHHHHhCCCCCChhhHHHHHHHHHc
Q 044770 112 KLSLEYMKKMRVLGHSISYLVFNRLIILNS-------SPGRR-------KTIPNILRQMKADKVAPHVSTFHILMKIEAN 177 (464)
Q Consensus 112 ~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~-------~~~~~-------~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 177 (464)
++|+.+|++..... +-+...|..++..+. +.|++ ++|..+|++..+.-.+.+...|..++..+.+
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 56677777776642 345556666665554 24665 6777777777662113344567777777777
Q ss_pred cCChhHHHHHHHHHHhCCCCCc-Hh-HHHHHHHHHHhcChhhHHHHHHHHHHhccCCCChhhHHHHHHHHH-hhcChhhH
Q 044770 178 DHNIEGLMKVYSDMKRSEVEPN-EV-SYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYG-YLAKGKDL 254 (464)
Q Consensus 178 ~~~~~~a~~~~~~m~~~~~~p~-~~-~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~a 254 (464)
.|++++|..+|++..+. .|+ .. .|..+...+.+.|++++|..+|++..+... .+...|........ ..|+.+.|
T Consensus 112 ~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p-~~~~~~~~~a~~~~~~~~~~~~A 188 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDAR-TRHHVYVTAALMEYYCSKDKSVA 188 (308)
T ss_dssp TTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTT-CCTHHHHHHHHHHHHTSCCHHHH
T ss_pred cCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHcCCHHHH
Confidence 77777777777777664 343 22 566666666777777777777777665422 22333322222111 13555555
Q ss_pred HHHHHHhccCCCCchhhHHHHHHHhhccCChHHHHHHHHHHHhcc-ccC--ChhhHHHHHHHHHhcCChhHHHHHHHHHH
Q 044770 255 ERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVK-QLK--ATEQYNSVISVYCKNGFIDKASGLLKEMS 331 (464)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~--~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 331 (464)
..+|+......+.+...|..++..+.+.|++++|..+|++..... .+| ....|..++..+.+.|+.+.|..+++++.
T Consensus 189 ~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~ 268 (308)
T 2ond_A 189 FKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRF 268 (308)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 555555544333344445555555555555555555555555531 122 23345555555555555555555555555
Q ss_pred h
Q 044770 332 M 332 (464)
Q Consensus 332 ~ 332 (464)
+
T Consensus 269 ~ 269 (308)
T 2ond_A 269 T 269 (308)
T ss_dssp H
T ss_pred H
Confidence 4
No 67
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.49 E-value=3.6e-11 Score=105.87 Aligned_cols=217 Identities=11% Similarity=-0.023 Sum_probs=176.1
Q ss_pred ccHHHHHHHHHhCCCCCChhhHHHHHHHHHc-------cCCh-------hHHHHHHHHHHhCCCCC-cHhHHHHHHHHHH
Q 044770 147 KTIPNILRQMKADKVAPHVSTFHILMKIEAN-------DHNI-------EGLMKVYSDMKRSEVEP-NEVSYCILATAHA 211 (464)
Q Consensus 147 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~~~~-------~~a~~~~~~m~~~~~~p-~~~~~~~li~~~~ 211 (464)
++|..+|++..... +.+...|..++..+.. .|++ ++|..+|++..+. +.| +...|..++..+.
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~-~~p~~~~~~~~~~~~~~ 110 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAIST-LLKKNMLLYFAYADYEE 110 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTT-TTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHH-hCcccHHHHHHHHHHHH
Confidence 57788899888753 5667788888777753 5886 8999999999873 134 5568999999999
Q ss_pred hcChhhHHHHHHHHHHhccCCCC-hh-hHHHHHHHHHhhcChhhHHHHHHHhccCCCCchhhHHHHHHHhh-ccCChHHH
Q 044770 212 VARLYTVAETYVEALEKSMTGNN-WS-TLDVLIILYGYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFG-RIAQVSRA 288 (464)
Q Consensus 212 ~~~~~~~a~~~~~~~~~~~~~~~-~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~a 288 (464)
+.|++++|..+|+++.+. .|+ .. +|..+...+.+.|+.++|..+|+......+.....|........ ..|++++|
T Consensus 111 ~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~~A 188 (308)
T 2ond_A 111 SRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVA 188 (308)
T ss_dssp HTTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHHH
T ss_pred hcCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCHHHH
Confidence 999999999999999884 343 33 78999999999999999999999998866666656654444322 36999999
Q ss_pred HHHHHHHHhccccCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCC-CCc--cHHHHHHHHHHHHhcCChHHHHHHHHHh
Q 044770 289 EELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNG-CKP--NAITYRHLALGCFKSNLVEEGFKALELG 365 (464)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g-~~p--~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 365 (464)
..+|+...+.. +.+...|..++..+.+.|++++|..+|++..... +.| ....|..++......|+.+.|..+++.+
T Consensus 189 ~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a 267 (308)
T 2ond_A 189 FKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRR 267 (308)
T ss_dssp HHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99999998743 3467889999999999999999999999999863 455 3567888888888999999999999999
Q ss_pred HHH
Q 044770 366 MKL 368 (464)
Q Consensus 366 ~~~ 368 (464)
++.
T Consensus 268 ~~~ 270 (308)
T 2ond_A 268 FTA 270 (308)
T ss_dssp HHH
T ss_pred HHH
Confidence 643
No 68
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.48 E-value=6.1e-12 Score=101.68 Aligned_cols=171 Identities=12% Similarity=0.091 Sum_probs=113.4
Q ss_pred ChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCcHhHHHHHHHHHHhcChhhHHHHHHHHHHhccCCCChhhHHHHHH
Q 044770 164 HVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLII 243 (464)
Q Consensus 164 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 243 (464)
+..+|..+...|.+.|++++|++.|++..+.. +-+..+|..+..++.+.|++++|...+...... .+.+...+..+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~~ 81 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVL-DTTSAEAYYILGS 81 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-CchhHHHHHHHHH
Confidence 45566677777777777777777777766553 224556666777777777777777777776654 2334455555666
Q ss_pred HHHhhcChhhHHHHHHHhccCCCCchhhHHHHHHHhhccCChHHHHHHHHHHHhccccCChhhHHHHHHHHHhcCChhHH
Q 044770 244 LYGYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKA 323 (464)
Q Consensus 244 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a 323 (464)
.+...++++.+...+.......+.+...+..+...|.+.|++++|.+.|++..+.. +.+...|..+..+|.+.|++++|
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~lg~~~~~~g~~~~A 160 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFIRAYQSIGLAYEGKGLRDEA 160 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-chhhhHHHHHHHHHHHCCCHHHH
Confidence 66666667777766666666555556666677777777777777777777776632 33556677777777777777777
Q ss_pred HHHHHHHHhCCCCccH
Q 044770 324 SGLLKEMSMNGCKPNA 339 (464)
Q Consensus 324 ~~~~~~m~~~g~~p~~ 339 (464)
+..|++.++ +.|+.
T Consensus 161 ~~~~~~al~--~~p~~ 174 (184)
T 3vtx_A 161 VKYFKKALE--KEEKK 174 (184)
T ss_dssp HHHHHHHHH--TTHHH
T ss_pred HHHHHHHHh--CCccC
Confidence 777777766 34543
No 69
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.48 E-value=2e-12 Score=120.90 Aligned_cols=212 Identities=8% Similarity=-0.071 Sum_probs=142.6
Q ss_pred cHHHHHHHHHHHHHcCCCCchhhHHHHHHHhcCCCCc-ccHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhHHHHHH
Q 044770 110 VIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRR-KTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVY 188 (464)
Q Consensus 110 ~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 188 (464)
.+++++..++..... .+.+...+..+...+...|++ ++|.+.|++..+.. +.+...|..+...|...|++++|...|
T Consensus 83 ~~~~al~~l~~~~~~-~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~ 160 (474)
T 4abn_A 83 EMEKTLQQMEEVLGS-AQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCF 160 (474)
T ss_dssp HHHHHHHHHHHHHTT-CCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhcc-CchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 456777777766554 234677788888888888888 88888888887754 455778888888888888888888888
Q ss_pred HHHHhCCCCCcHhHHHHHHHHHHhc---------ChhhHHHHHHHHHHhccCCCChhhHHHHHHHHHhh--------cCh
Q 044770 189 SDMKRSEVEPNEVSYCILATAHAVA---------RLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYL--------AKG 251 (464)
Q Consensus 189 ~~m~~~~~~p~~~~~~~li~~~~~~---------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------~~~ 251 (464)
++..+. .|+...+..+..++... |++++|+..+++..+.. +.+...+..+..++... |++
T Consensus 161 ~~al~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~g~~ 237 (474)
T 4abn_A 161 SGALTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQNPKIS 237 (474)
T ss_dssp HHHHTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTCCHHHH
T ss_pred HHHHhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhccccchH
Confidence 888876 46667777888888887 88888888888877752 33456666666666666 566
Q ss_pred hhHHHHHHHhccCCC---CchhhHHHHHHHhhccCChHHHHHHHHHHHhccccCChhhHHHHHHHHHhcCChhHHHHHH
Q 044770 252 KDLERIWATVQELPN---VRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLL 327 (464)
Q Consensus 252 ~~a~~~~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~ 327 (464)
++|...++......+ .+...|..+...|...|++++|...|++..+.. +.+...+..+...+...|++++|+..+
T Consensus 238 ~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~a~~~l~~~~~~lg~~~eAi~~~ 315 (474)
T 4abn_A 238 QQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD-PAWPEPQQREQQLLEFLSRLTSLLESK 315 (474)
T ss_dssp HHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 666666665555333 444555555566666666666666666555422 223444555555555555555555433
No 70
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.45 E-value=5.8e-13 Score=117.55 Aligned_cols=135 Identities=16% Similarity=0.107 Sum_probs=77.4
Q ss_pred chhHHHHHHHHHHhhCcHHHHHHHHHHHHHc-------CCCCchhhHHHHHHHhcCCCCcccHHHHHHHHHhC------C
Q 044770 94 NELLYNNLVIACLDKGVIKLSLEYMKKMRVL-------GHSISYLVFNRLIILNSSPGRRKTIPNILRQMKAD------K 160 (464)
Q Consensus 94 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~ 160 (464)
+..++..+...+...|++++|+..|+++.+. ..+....++..+...+...|++++|...+++..+. +
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 105 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK 105 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 3456666666677777777777777666652 12223445566666666666666666666665542 1
Q ss_pred -CCCChhhHHHHHHHHHccCChhHHHHHHHHHHhC------CCCC-cHhHHHHHHHHHHhcChhhHHHHHHHHHHh
Q 044770 161 -VAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRS------EVEP-NEVSYCILATAHAVARLYTVAETYVEALEK 228 (464)
Q Consensus 161 -~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~------~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 228 (464)
.+....++..+...+...|++++|...|++..+. +..| ....+..+...+...|++++|..+++++..
T Consensus 106 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~ 181 (311)
T 3nf1_A 106 DHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALE 181 (311)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 1222345556666666666666666666665542 1112 233455556666666666666666666544
No 71
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.44 E-value=2.3e-12 Score=120.54 Aligned_cols=214 Identities=9% Similarity=-0.077 Sum_probs=125.8
Q ss_pred hHHHHHHhhhcCCCCC-chhHHHHHHHHHHhhCcH-HHHHHHHHHHHHcCCCCchhhHHHHHHHhcCCCCcccHHHHHHH
Q 044770 78 ISQGEKLFCCIPKDYQ-NELLYNNLVIACLDKGVI-KLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQ 155 (464)
Q Consensus 78 ~~~a~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~-~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 155 (464)
++++...++......| +...|..+...+...|++ ++|++.|++..+.. +.+...|..+...|...|++++|...|++
T Consensus 84 ~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~ 162 (474)
T 4abn_A 84 MEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCFSG 162 (474)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 4555555554444322 455566666666666666 66666666666543 22355566666666666666666666666
Q ss_pred HHhCCCCCChhhHHHHHHHHHcc---------CChhHHHHHHHHHHhCCCCCcHhHHHHHHHHHHhc--------ChhhH
Q 044770 156 MKADKVAPHVSTFHILMKIEAND---------HNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVA--------RLYTV 218 (464)
Q Consensus 156 ~~~~~~~~~~~~~~~l~~~~~~~---------~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~--------~~~~~ 218 (464)
..+. .|+...+..+...+... |++++|...|++..+.. +.+...|..+..+|... |++++
T Consensus 163 al~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~ 239 (474)
T 4abn_A 163 ALTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQNPKISQQ 239 (474)
T ss_dssp HHTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred HHhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhccccchHHH
Confidence 6654 34455556666666666 66666666666665542 22355566666666666 66666
Q ss_pred HHHHHHHHHhccCC--CChhhHHHHHHHHHhhcChhhHHHHHHHhccCCCCchhhHHHHHHHhhccCChHHHHHHHHHH
Q 044770 219 AETYVEALEKSMTG--NNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEM 295 (464)
Q Consensus 219 a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 295 (464)
|+..|++..+.... .+...+..+..++...|++++|.+.++......+.+...+..+...+...|++++|.+.+..+
T Consensus 240 A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~~~ 318 (474)
T 4abn_A 240 ALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKGKT 318 (474)
T ss_dssp HHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 66666666554210 345566666666666666666666666666655555555666666666666666666655443
No 72
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.44 E-value=6.8e-11 Score=107.45 Aligned_cols=229 Identities=11% Similarity=0.009 Sum_probs=145.7
Q ss_pred HHHHHHccCChhHHHHHHHHHHhCCC-CCc----HhHHHHHHHHHHhcChhhHHHHHHHHHHhccCC-C-----ChhhHH
Q 044770 171 LMKIEANDHNIEGLMKVYSDMKRSEV-EPN----EVSYCILATAHAVARLYTVAETYVEALEKSMTG-N-----NWSTLD 239 (464)
Q Consensus 171 l~~~~~~~~~~~~a~~~~~~m~~~~~-~p~----~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~-~-----~~~~~~ 239 (464)
....+...|++++|...|++..+... .++ ..++..+...|...|+++.|...+++..+.... + ...++.
T Consensus 107 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 186 (378)
T 3q15_A 107 RGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLF 186 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHH
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHH
Confidence 34455677888888888877764310 112 345666777777888888888877776543111 1 134556
Q ss_pred HHHHHHHhhcChhhHHHHHHHhcc----CC--CCchhhHHHHHHHhhccCChHHHHHHHHHHHhc----cccCChhhHHH
Q 044770 240 VLIILYGYLAKGKDLERIWATVQE----LP--NVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSV----KQLKATEQYNS 309 (464)
Q Consensus 240 ~l~~~~~~~~~~~~a~~~~~~~~~----~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~~~~~~~~ 309 (464)
.+..+|...|+++.|...++.... .+ .....++..+...|...|++++|...|++..+. +.+....++..
T Consensus 187 ~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 266 (378)
T 3q15_A 187 VIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFG 266 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHH
Confidence 667777777777777777666544 11 112335667778888888888888888877651 22223566777
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCC---Ccc-HHHHHHHHHHHHhcCC---hHHHHHHHHHhHHHHhhhhhcCCCC-cH
Q 044770 310 VISVYCKNGFIDKASGLLKEMSMNGC---KPN-AITYRHLALGCFKSNL---VEEGFKALELGMKLITTKKVRSSTP-WL 381 (464)
Q Consensus 310 li~~~~~~~~~~~a~~~~~~m~~~g~---~p~-~~~~~~ll~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~p-~~ 381 (464)
+...+.+.|++++|...+++..+... .|. ...+..+...+...++ +.+|+.+++.. +..| ..
T Consensus 267 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~----------~~~~~~~ 336 (378)
T 3q15_A 267 LSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK----------NLHAYIE 336 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT----------TCHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC----------CChhHHH
Confidence 88888888888888888888766321 122 2344444455566666 66666666543 2222 23
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHHHH
Q 044770 382 ETTLSIIEIFAEKGDVGNAENLFEELKK 409 (464)
Q Consensus 382 ~~~~~li~~~~~~g~~~~A~~~~~~m~~ 409 (464)
..+..+...|...|++++|...|++..+
T Consensus 337 ~~~~~la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 337 ACARSAAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 4556788888888888888888887764
No 73
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.43 E-value=5.5e-13 Score=117.68 Aligned_cols=239 Identities=14% Similarity=0.108 Sum_probs=169.8
Q ss_pred chhhHHHHHHHhcCCCCcccHHHHHHHHHhC-------CCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhC------C
Q 044770 129 SYLVFNRLIILNSSPGRRKTIPNILRQMKAD-------KVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRS------E 195 (464)
Q Consensus 129 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~------~ 195 (464)
+..++..+...+...|++++|..+++++.+. ..+....++..+...+...|++++|...+++..+. +
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 105 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK 105 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 4667888889999999999999999998873 22344567888999999999999999999988753 2
Q ss_pred C-CCcHhHHHHHHHHHHhcChhhHHHHHHHHHHhcc------C-CCChhhHHHHHHHHHhhcChhhHHHHHHHhccC---
Q 044770 196 V-EPNEVSYCILATAHAVARLYTVAETYVEALEKSM------T-GNNWSTLDVLIILYGYLAKGKDLERIWATVQEL--- 264 (464)
Q Consensus 196 ~-~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~------~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--- 264 (464)
- .....++..+...+...|++++|...++++.+.. . +.....+..+...+...|++++|...++.....
T Consensus 106 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~ 185 (311)
T 3nf1_A 106 DHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQT 185 (311)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 1 2235678888899999999999999999886642 1 223456788888999999999999999887663
Q ss_pred -----CCCchhhHHHHHHHhhccCChHHHHHHHHHHHhcc-------ccCC-------hhhHHHHHHHHHhcCChhHHHH
Q 044770 265 -----PNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVK-------QLKA-------TEQYNSVISVYCKNGFIDKASG 325 (464)
Q Consensus 265 -----~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-------~~~~-------~~~~~~li~~~~~~~~~~~a~~ 325 (464)
.+.....+..+...|...|++++|...++++.+.. ..+. ...+..+...+...+.+.++..
T Consensus 186 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 265 (311)
T 3nf1_A 186 KLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGG 265 (311)
T ss_dssp TSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC-
T ss_pred HhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHH
Confidence 33344568888999999999999999999887631 1111 1122223333445566667777
Q ss_pred HHHHHHhCCCCccHHHHHHHHHHHHhcCChHHHHHHHHHhHHH
Q 044770 326 LLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKL 368 (464)
Q Consensus 326 ~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 368 (464)
.+....... ..+..++..+...|...|++++|..+++.++++
T Consensus 266 ~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l 307 (311)
T 3nf1_A 266 WYKACKVDS-PTVTTTLKNLGALYRRQGKFEAAETLEEAAMRS 307 (311)
T ss_dssp --------C-HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHhhcCCCC-chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 777666531 234567888899999999999999999999654
No 74
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.43 E-value=2.8e-11 Score=97.73 Aligned_cols=167 Identities=16% Similarity=0.057 Sum_probs=148.1
Q ss_pred cHhHHHHHHHHHHhcChhhHHHHHHHHHHhccCCCChhhHHHHHHHHHhhcChhhHHHHHHHhccCCCCchhhHHHHHHH
Q 044770 199 NEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSKSYVLAIEA 278 (464)
Q Consensus 199 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 278 (464)
+...|..+...+.+.|++++|+..|++..+.. +.+..++..+..++...|+++.|...+.......+.....+..+...
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 82 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSA 82 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHHH
Confidence 67789999999999999999999999998863 45678899999999999999999999999988777788888899999
Q ss_pred hhccCChHHHHHHHHHHHhccccCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCccHHHHHHHHHHHHhcCChHHH
Q 044770 279 FGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEG 358 (464)
Q Consensus 279 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a 358 (464)
+...++++.|...+...... .+.+...+..+...|.+.|++++|++.|++..+.. +-+...+..+..++...|++++|
T Consensus 83 ~~~~~~~~~a~~~~~~a~~~-~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~lg~~~~~~g~~~~A 160 (184)
T 3vtx_A 83 NFMIDEKQAAIDALQRAIAL-NTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFIRAYQSIGLAYEGKGLRDEA 160 (184)
T ss_dssp HHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHh-CccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-chhhhHHHHHHHHHHHCCCHHHH
Confidence 99999999999999998874 34467789999999999999999999999999853 22677889999999999999999
Q ss_pred HHHHHHhHHH
Q 044770 359 FKALELGMKL 368 (464)
Q Consensus 359 ~~~~~~~~~~ 368 (464)
+..|+++++.
T Consensus 161 ~~~~~~al~~ 170 (184)
T 3vtx_A 161 VKYFKKALEK 170 (184)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHhC
Confidence 9999999643
No 75
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.43 E-value=7e-10 Score=106.74 Aligned_cols=392 Identities=10% Similarity=-0.014 Sum_probs=262.2
Q ss_pred HHHHHHHHHHHHcCCCCCCchhHHHHHHHHHhhcChHHHHHHhhhcCCCCC-chhHHHHHHHHHHhhCc---HHHHHHHH
Q 044770 43 KRALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQGEKLFCCIPKDYQ-NELLYNNLVIACLDKGV---IKLSLEYM 118 (464)
Q Consensus 43 ~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~li~~~~~~~~---~~~a~~~~ 118 (464)
.+.+..|+..+... +-|...|..++..+.+.+.++.+..+|+++....| ....|...+..-.+.+. ++.+..+|
T Consensus 49 ~d~i~~lE~~l~~n--p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lf 126 (679)
T 4e6h_A 49 SDVIGKLNDMIEEQ--PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRFPLMANIWCMRLSLEFDKMEELDAAVIEPVL 126 (679)
T ss_dssp SCHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC--CCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHC--cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCCcchHHHHHHHH
Confidence 34455556665544 45889999999999999999999999999988855 67789999998888898 99999999
Q ss_pred HHHHHcC-CCCchhhHHHHHHHhcCCCCc--------ccHHHHHHHHHh-CCC-CCC-hhhHHHHHHHHH---------c
Q 044770 119 KKMRVLG-HSISYLVFNRLIILNSSPGRR--------KTIPNILRQMKA-DKV-APH-VSTFHILMKIEA---------N 177 (464)
Q Consensus 119 ~~m~~~~-~~~~~~~~~~l~~~~~~~~~~--------~~a~~~~~~~~~-~~~-~~~-~~~~~~l~~~~~---------~ 177 (464)
++..... .+|++..|...+....+.++. +.+.++|+..+. .|. .++ ...|...+.... .
T Consensus 127 eRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~ee 206 (679)
T 4e6h_A 127 ARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEE 206 (679)
T ss_dssp HHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHH
T ss_pred HHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHH
Confidence 9999863 147888888888766554443 334578887665 465 454 467877776543 2
Q ss_pred cCChhHHHHHHHHHHhCCCCCcHhHHHH---HHHHH----------HhcChhhHHHHHHHHHHhc--cCC---CC-----
Q 044770 178 DHNIEGLMKVYSDMKRSEVEPNEVSYCI---LATAH----------AVARLYTVAETYVEALEKS--MTG---NN----- 234 (464)
Q Consensus 178 ~~~~~~a~~~~~~m~~~~~~p~~~~~~~---li~~~----------~~~~~~~~a~~~~~~~~~~--~~~---~~----- 234 (464)
.++++.+..+|+.........-..+|.. +.... -...+++.|...+.++... ++. |.
T Consensus 207 q~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~ 286 (679)
T 4e6h_A 207 QQRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQA 286 (679)
T ss_dssp HHHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTC
T ss_pred HhHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccc
Confidence 4457889999999885322212233322 21111 0112334455555543221 110 10
Q ss_pred ---------------hhhHHHHHHHHHhhc-------ChhhHHHHHHHhccCCCCchhhHHHHHHHhhccCChHHHH-HH
Q 044770 235 ---------------WSTLDVLIILYGYLA-------KGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAE-EL 291 (464)
Q Consensus 235 ---------------~~~~~~l~~~~~~~~-------~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~-~~ 291 (464)
...|...+..--..+ ..+.+..+|++.....+.....|...+..+...|+.++|. .+
T Consensus 287 ~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~p~~~~lW~~ya~~~~~~~~~~~a~r~i 366 (679)
T 4e6h_A 287 TESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHVCFAPEIWFNMANYQGEKNTDSTVITKY 366 (679)
T ss_dssp CTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSCCTTHHHHH
T ss_pred hhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 022333333222221 1123456777777766667788888888888899999996 99
Q ss_pred HHHHHhccccCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCC---------Ccc------------HHHHHHHHHHHH
Q 044770 292 WLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGC---------KPN------------AITYRHLALGCF 350 (464)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~---------~p~------------~~~~~~ll~~~~ 350 (464)
|++... ..+.+...|-..+...-+.|+++.|..+|+.+++... .|+ ...|...+....
T Consensus 367 l~rAi~-~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~er 445 (679)
T 4e6h_A 367 LKLGQQ-CIPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMK 445 (679)
T ss_dssp HHHHHH-HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHH-hCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHH
Confidence 999987 4555666788888888999999999999999886410 132 235777777777
Q ss_pred hcCChHHHHHHHHHhHHHHhhhhhcCCCCcHHHHHHHHHHHHhc-CChhhHHHHHHHHHHcCCCCcHHHHHHHHHHHHHc
Q 044770 351 KSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEK-GDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKA 429 (464)
Q Consensus 351 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 429 (464)
+.|+.+.|..+|+.+++. .....+.... ..+..-.+. ++.+.|..+|+...+. ++-+...|...+.-....
T Consensus 446 R~~~l~~AR~vf~~A~~~-----~~~~~~~lyi--~~A~lE~~~~~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~ 517 (679)
T 4e6h_A 446 RIQGLAASRKIFGKCRRL-----KKLVTPDIYL--ENAYIEYHISKDTKTACKVLELGLKY-FATDGEYINKYLDFLIYV 517 (679)
T ss_dssp HHHCHHHHHHHHHHHHHT-----GGGSCTHHHH--HHHHHHHTTTSCCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHh-----cCCCChHHHH--HHHHHHHHhCCCHHHHHHHHHHHHHH-CCCchHHHHHHHHHHHhC
Confidence 889999999999999531 0122333333 333333344 4599999999999876 334566788888888888
Q ss_pred CCC--hhHHHHHHHhCCC
Q 044770 430 KIN--DPNLLRRMILGGA 445 (464)
Q Consensus 430 g~~--a~~~~~~m~~~~~ 445 (464)
|+. |..+|++......
T Consensus 518 ~~~~~AR~lferal~~~~ 535 (679)
T 4e6h_A 518 NEESQVKSLFESSIDKIS 535 (679)
T ss_dssp TCHHHHHHHHHHHTTTSS
T ss_pred CCHHHHHHHHHHHHHhcC
Confidence 874 8899999887643
No 76
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.39 E-value=5.9e-11 Score=107.86 Aligned_cols=313 Identities=10% Similarity=-0.057 Sum_probs=153.5
Q ss_pred ChhchHHHHHHH--HhhcchHHHHHHHHHHHHcCC-CCCC--chhHHHHHHH--HHhhcChHHHH---------HHhhhc
Q 044770 25 HRGEIFHSINRL--RKLQLNKRALEVMEWVIRERP-YRPK--ELDYSYLLEF--TIKNHGISQGE---------KLFCCI 88 (464)
Q Consensus 25 ~~~~~~~~l~~~--~~~~~~~~A~~~~~~~~~~~~-~~~~--~~~~~~l~~~--~~~~g~~~~a~---------~~~~~~ 88 (464)
+...-..+-..+ ...+++++|.++++.+.+... ...+ ...|-.++.. ..-.+.++.+. +.++.+
T Consensus 9 ~~~v~~~l~~wy~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~i 88 (378)
T 3q15_A 9 SSRVGVKINEWYKMIRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELLETI 88 (378)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHGGGBCCCHHHHHHHHHHHHHHHHHHHTCCC--------CHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhcCcccccccccchHHHHHHH
Confidence 333334444444 678888999998888765321 1112 2222222221 11112222222 444443
Q ss_pred CCC-CC--ch---hHHHHHHHHHHhhCcHHHHHHHHHHHHHcCC-CC----chhhHHHHHHHhcCCCCcccHHHHHHHHH
Q 044770 89 PKD-YQ--NE---LLYNNLVIACLDKGVIKLSLEYMKKMRVLGH-SI----SYLVFNRLIILNSSPGRRKTIPNILRQMK 157 (464)
Q Consensus 89 ~~~-~~--~~---~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~-~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 157 (464)
... .+ +. ..|......+...|++++|+..|++..+... .+ ...++..+...|...|+++.|...+++..
T Consensus 89 ~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al 168 (378)
T 3q15_A 89 ETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQAL 168 (378)
T ss_dssp HGGGHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hccCCCCccHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHH
Confidence 221 01 11 1222334445666777777777777665311 11 13445556666666666666666666654
Q ss_pred hC----C-CCC-ChhhHHHHHHHHHccCChhHHHHHHHHHHhC----CCCC-cHhHHHHHHHHHHhcChhhHHHHHHHHH
Q 044770 158 AD----K-VAP-HVSTFHILMKIEANDHNIEGLMKVYSDMKRS----EVEP-NEVSYCILATAHAVARLYTVAETYVEAL 226 (464)
Q Consensus 158 ~~----~-~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~----~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~~ 226 (464)
+. + ..+ ...+++.+...|...|++++|.+.|++..+. +..+ ...++..+..+|...|++++|...+++.
T Consensus 169 ~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~a 248 (378)
T 3q15_A 169 DIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKA 248 (378)
T ss_dssp HHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 31 0 000 1234555556666666666666666554431 1000 1233444555555555555555555554
Q ss_pred HhccCCCChhhHHHHHHHHHhhcChhhHHHHHHHhccCCCCchhhHHHHHHHhhccCChHHHHHHHHHHHhccc----cC
Q 044770 227 EKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQ----LK 302 (464)
Q Consensus 227 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~----~~ 302 (464)
....... ..+....++..+...|.+.|++++|...+++..+... +.
T Consensus 249 l~~~~~~------------------------------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 298 (378)
T 3q15_A 249 AKVSREK------------------------------VPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKF 298 (378)
T ss_dssp HHHHHHH------------------------------CGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSC
T ss_pred HHHHHhh------------------------------CChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHH
Confidence 4310000 2222233455566666666666666666666554221 11
Q ss_pred ChhhHHHHHHHHHhcCC---hhHHHHHHHHHHhCCCCcc-HHHHHHHHHHHHhcCChHHHHHHHHHhHHHHh
Q 044770 303 ATEQYNSVISVYCKNGF---IDKASGLLKEMSMNGCKPN-AITYRHLALGCFKSNLVEEGFKALELGMKLIT 370 (464)
Q Consensus 303 ~~~~~~~li~~~~~~~~---~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 370 (464)
....+..+...+...++ +.+|+..+++ .+..|+ ...+..+...|...|++++|...|+.+++...
T Consensus 299 ~~~~~~~l~~ly~~~~~~~~~~~al~~~~~---~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~ 367 (378)
T 3q15_A 299 YKELFLFLQAVYKETVDERKIHDLLSYFEK---KNLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLKAQE 367 (378)
T ss_dssp HHHHHHHHHHHHSSSCCHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHh---CCChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 12234444444555555 5556555554 222232 23455666667777888888877777766544
No 77
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.37 E-value=2.2e-10 Score=103.84 Aligned_cols=277 Identities=10% Similarity=-0.018 Sum_probs=152.1
Q ss_pred HHHHHHHhhCcHHHHHHHHHHHHHcCCCCchh----hHHHHHHHhcCCCCcccHHHHHHHHHhCCC-CCCh----hhHHH
Q 044770 100 NLVIACLDKGVIKLSLEYMKKMRVLGHSISYL----VFNRLIILNSSPGRRKTIPNILRQMKADKV-APHV----STFHI 170 (464)
Q Consensus 100 ~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~----~~~~~ 170 (464)
.....+...|++++|...+++........+.. +++.+...+...|++++|...+++.....- .++. .++..
T Consensus 19 ~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 98 (373)
T 1hz4_A 19 LRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQ 98 (373)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 33445556677777777777766542111111 233444445555666666655555543110 0111 12333
Q ss_pred HHHHHHccCChhHHHHHHHHHHhC----CCC--Cc-HhHHHHHHHHHHhcChhhHHHHHHHHHHhccCCCChhhHHHHHH
Q 044770 171 LMKIEANDHNIEGLMKVYSDMKRS----EVE--PN-EVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLII 243 (464)
Q Consensus 171 l~~~~~~~~~~~~a~~~~~~m~~~----~~~--p~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 243 (464)
+...+...|++++|...+++..+. +.. |. ...+..+...+...|++++|...+++.........
T Consensus 99 la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~--------- 169 (373)
T 1hz4_A 99 QSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQ--------- 169 (373)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSC---------
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccC---------
Confidence 444455555555555555554321 111 11 22333344444555555555555554433211100
Q ss_pred HHHhhcChhhHHHHHHHhccCCCCchhhHHHHHHHhhccCChHHHHHHHHHHHhccccCCh-hhHH-----HHHHHHHhc
Q 044770 244 LYGYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKAT-EQYN-----SVISVYCKN 317 (464)
Q Consensus 244 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~-----~li~~~~~~ 317 (464)
+......+..+...+...|++++|...+++.......++. ..+. ..+..+...
T Consensus 170 ---------------------~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (373)
T 1hz4_A 170 ---------------------PQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMT 228 (373)
T ss_dssp ---------------------GGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHT
T ss_pred ---------------------cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHC
Confidence 0011224556677777888888888888877653222211 1222 223446788
Q ss_pred CChhHHHHHHHHHHhCCCCc---cHHHHHHHHHHHHhcCChHHHHHHHHHhHHHHhhhhhcCCCCcH-HHHHHHHHHHHh
Q 044770 318 GFIDKASGLLKEMSMNGCKP---NAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWL-ETTLSIIEIFAE 393 (464)
Q Consensus 318 ~~~~~a~~~~~~m~~~g~~p---~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~p~~-~~~~~li~~~~~ 393 (464)
|++++|...+++.......+ ....+..+...+...|++++|...++.++..... .+..++. ..+..+..++..
T Consensus 229 g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~---~~~~~~~~~~~~~la~~~~~ 305 (373)
T 1hz4_A 229 GDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARS---LRLMSDLNRNLLLLNQLYWQ 305 (373)
T ss_dssp TCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh---CcchhhHHHHHHHHHHHHHH
Confidence 99999999888877643221 1234566777888889999999999988654332 2322233 356677888889
Q ss_pred cCChhhHHHHHHHHHH
Q 044770 394 KGDVGNAENLFEELKK 409 (464)
Q Consensus 394 ~g~~~~A~~~~~~m~~ 409 (464)
.|+.++|...+++...
T Consensus 306 ~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 306 AGRKSDAQRVLLDALK 321 (373)
T ss_dssp HTCHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHH
Confidence 9999999999988765
No 78
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.34 E-value=9.3e-11 Score=94.55 Aligned_cols=164 Identities=10% Similarity=-0.070 Sum_probs=125.2
Q ss_pred hhHHHHHHHHHhhcChHHHHHHhhhcCCC-CCchhHHHHHHHHHHhhCcHHHHHHHHHHHHHcCCCCchhhHHHHHHHhc
Q 044770 63 LDYSYLLEFTIKNHGISQGEKLFCCIPKD-YQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNS 141 (464)
Q Consensus 63 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~ 141 (464)
..+..+...+...|++++|...|+++... +.+...+..+...+...|++++|...++++.+.. +.+...+..+...+.
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~ 87 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTYV 87 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHH
Confidence 44566777788888888888888888776 3356778888888888888888888888887763 345667777777888
Q ss_pred CCCCcccHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCcHhHHHHHHHHHHhcChhhHHHH
Q 044770 142 SPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAET 221 (464)
Q Consensus 142 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~ 221 (464)
..|++++|...++.+.+.. +.+...+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|..
T Consensus 88 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~ 165 (186)
T 3as5_A 88 QVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEEALP 165 (186)
T ss_dssp HHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHHHHH
Confidence 8888888888888877654 4566777777888888888888888888877653 3356677777888888888888888
Q ss_pred HHHHHHhc
Q 044770 222 YVEALEKS 229 (464)
Q Consensus 222 ~~~~~~~~ 229 (464)
.+++..+.
T Consensus 166 ~~~~~~~~ 173 (186)
T 3as5_A 166 HFKKANEL 173 (186)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHc
Confidence 88877654
No 79
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.33 E-value=7.2e-10 Score=100.48 Aligned_cols=276 Identities=11% Similarity=0.010 Sum_probs=172.7
Q ss_pred HHHHHHHHHhhcChHHHHHHhhhcCCCCC--ch----hHHHHHHHHHHhhCcHHHHHHHHHHHHHcCCC-Cc----hhhH
Q 044770 65 YSYLLEFTIKNHGISQGEKLFCCIPKDYQ--NE----LLYNNLVIACLDKGVIKLSLEYMKKMRVLGHS-IS----YLVF 133 (464)
Q Consensus 65 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~--~~----~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~-~~----~~~~ 133 (464)
.......+...|++++|...+++.....| +. .+++.+...+...|++++|...+++....... ++ ..++
T Consensus 17 ~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 96 (373)
T 1hz4_A 17 NALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSL 96 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 34455567789999999999887644422 11 25677778899999999999999988763211 12 2335
Q ss_pred HHHHHHhcCCCCcccHHHHHHHHHhC----CCC--C-ChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCC--C--cHhH
Q 044770 134 NRLIILNSSPGRRKTIPNILRQMKAD----KVA--P-HVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVE--P--NEVS 202 (464)
Q Consensus 134 ~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~--p--~~~~ 202 (464)
..+...+...|++++|...+++..+. +.. | ....+..+...+...|++++|...+++....... + ...+
T Consensus 97 ~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 176 (373)
T 1hz4_A 97 IQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQC 176 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHH
Confidence 66777889999999999999998752 222 2 2345667888899999999999999998754211 1 2345
Q ss_pred HHHHHHHHHhcChhhHHHHHHHHHHhccCCCCh-hhHHHHHHHHHhhcChhhHHHHHHHhccCCCCchhhHHHHHHHhhc
Q 044770 203 YCILATAHAVARLYTVAETYVEALEKSMTGNNW-STLDVLIILYGYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGR 281 (464)
Q Consensus 203 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 281 (464)
+..+...+...|++++|...+++.......++. ..+.... ....+..+..
T Consensus 177 ~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~-----------------------------~~~~~~~~~~ 227 (373)
T 1hz4_A 177 LAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNA-----------------------------NKVRVIYWQM 227 (373)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHH-----------------------------HHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHH-----------------------------HHHHHHHHHH
Confidence 777778888999999999999988654322221 1111110 0011122334
Q ss_pred cCChHHHHHHHHHHHhccccC---ChhhHHHHHHHHHhcCChhHHHHHHHHHHh----CCCCccH-HHHHHHHHHHHhcC
Q 044770 282 IAQVSRAEELWLEMQSVKQLK---ATEQYNSVISVYCKNGFIDKASGLLKEMSM----NGCKPNA-ITYRHLALGCFKSN 353 (464)
Q Consensus 282 ~g~~~~a~~~~~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~----~g~~p~~-~~~~~ll~~~~~~~ 353 (464)
.|++++|...++........+ ....+..+...+...|++++|...+++... .|..++. ..+..+..++...|
T Consensus 228 ~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g 307 (373)
T 1hz4_A 228 TGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAG 307 (373)
T ss_dssp TTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhC
Confidence 444444444444443321110 011344555666666777777776666543 2222222 24455566677778
Q ss_pred ChHHHHHHHHHhHHHH
Q 044770 354 LVEEGFKALELGMKLI 369 (464)
Q Consensus 354 ~~~~a~~~~~~~~~~~ 369 (464)
+.++|...++.++...
T Consensus 308 ~~~~A~~~l~~al~~~ 323 (373)
T 1hz4_A 308 RKSDAQRVLLDALKLA 323 (373)
T ss_dssp CHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHh
Confidence 8888888888776543
No 80
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.30 E-value=2e-10 Score=92.50 Aligned_cols=163 Identities=9% Similarity=-0.044 Sum_probs=79.3
Q ss_pred hHHHHHHHHHccCChhHHHHHHHHHHhCCCCCcHhHHHHHHHHHHhcChhhHHHHHHHHHHhccCCCChhhHHHHHHHHH
Q 044770 167 TFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYG 246 (464)
Q Consensus 167 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 246 (464)
.+..+...+...|++++|...|+++.+.. +.+...+..+...+...|++++|...++++.+. .+.+...
T Consensus 10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~--------- 78 (186)
T 3as5_A 10 YYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLAD-APDNVKV--------- 78 (186)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHH---------
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCCCHHH---------
Confidence 34445555555666666666665554432 223445555555555566666666655555443 1222333
Q ss_pred hhcChhhHHHHHHHhccCCCCchhhHHHHHHHhhccCChHHHHHHHHHHHhccccCChhhHHHHHHHHHhcCChhHHHHH
Q 044770 247 YLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGL 326 (464)
Q Consensus 247 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~ 326 (464)
+..+...+...|++++|.+.++++.+. .+.+...+..+...+...|++++|...
T Consensus 79 -------------------------~~~~a~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~a~~~~~~~~~~~A~~~ 132 (186)
T 3as5_A 79 -------------------------ATVLGLTYVQVQKYDLAVPLLIKVAEA-NPINFNVRFRLGVALDNLGRFDEAIDS 132 (186)
T ss_dssp -------------------------HHHHHHHHHHHTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred -------------------------HHHHHHHHHHhcCHHHHHHHHHHHHhc-CcHhHHHHHHHHHHHHHcCcHHHHHHH
Confidence 333444444444444444444444432 122344444455555555555555555
Q ss_pred HHHHHhCCCCccHHHHHHHHHHHHhcCChHHHHHHHHHhHH
Q 044770 327 LKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMK 367 (464)
Q Consensus 327 ~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 367 (464)
++++.+.. +.+...+..+...+...|++++|...++.+++
T Consensus 133 ~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 172 (186)
T 3as5_A 133 FKIALGLR-PNEGKVHRAIAFSYEQMGRHEEALPHFKKANE 172 (186)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhcC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 55554432 12344444555555555555555555555544
No 81
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.29 E-value=3.9e-11 Score=104.03 Aligned_cols=238 Identities=13% Similarity=0.083 Sum_probs=133.7
Q ss_pred cCCCCcccHHHHHHHHHhC-------CCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhC------CCCC-cHhHHHHH
Q 044770 141 SSPGRRKTIPNILRQMKAD-------KVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRS------EVEP-NEVSYCIL 206 (464)
Q Consensus 141 ~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~------~~~p-~~~~~~~l 206 (464)
...|++++|...|++..+. ..+....++..+...+...|++++|...|++..+. +-.| ...++..+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 4566777777777766541 11223445666677777777777777777766543 1112 24456666
Q ss_pred HHHHHhcChhhHHHHHHHHHHhccCCCChhhHHHHHHHHHhhcChhhHHHHHHHhcc-CCCCchhhHHHHHHHhhccCCh
Q 044770 207 ATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQE-LPNVRSKSYVLAIEAFGRIAQV 285 (464)
Q Consensus 207 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~ 285 (464)
..++...|++++|...+++...... .... ..+.....+..+...|...|++
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~~~~----------------------------~~~~~~~~~~~~~~~~la~~~~~~g~~ 143 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALEIRE----------------------------KVLGKFHPDVAKQLNNLALLCQNQGKA 143 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHH----------------------------HHHCTTCHHHHHHHHHHHHHHHTTTCH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHH----------------------------HHcCCCChHHHHHHHHHHHHHHHcCCH
Confidence 6666777777777776666544310 0000 0112233466677777777888
Q ss_pred HHHHHHHHHHHhc------c-ccCChhhHHHHHHHHHhcCChhHHHHHHHHHHhC-------CCCccHH-HHHHHHHHHH
Q 044770 286 SRAEELWLEMQSV------K-QLKATEQYNSVISVYCKNGFIDKASGLLKEMSMN-------GCKPNAI-TYRHLALGCF 350 (464)
Q Consensus 286 ~~a~~~~~~~~~~------~-~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-------g~~p~~~-~~~~ll~~~~ 350 (464)
++|...|++..+. . .+....++..+...|...|++++|...+++..+. ...+... .+..+.....
T Consensus 144 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (283)
T 3edt_B 144 EEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREE 223 (283)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHh
Confidence 8888877777653 1 1223556778888888888888888888887652 1222222 2222222222
Q ss_pred hcCChHHHHHHHHHhHHHHhhhhhcCCCC-cHHHHHHHHHHHHhcCChhhHHHHHHHHHH
Q 044770 351 KSNLVEEGFKALELGMKLITTKKVRSSTP-WLETTLSIIEIFAEKGDVGNAENLFEELKK 409 (464)
Q Consensus 351 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 409 (464)
..+....+.. +..+..... ......| ...++..+...|...|++++|...|++..+
T Consensus 224 ~~~~~~~~~~-~~~~~~~~~--~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 224 SKDKRRDSAP-YGEYGSWYK--ACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp TTCCCCC---------------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred cCCchhHHHH-HHHHHHHHH--hcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 2222222222 222211100 0011223 345688899999999999999999998775
No 82
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.25 E-value=5.9e-10 Score=108.55 Aligned_cols=167 Identities=11% Similarity=-0.022 Sum_probs=99.2
Q ss_pred hHHHHHHHHHHhcChhhHHHHHHHHHHhccCCCChhhHHHHHHHHHhhcChhhHHHHHHHhccCCCCchhhHHHHHHHhh
Q 044770 201 VSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFG 280 (464)
Q Consensus 201 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 280 (464)
.+|+.+...+.+.|++++|+..|++..+. .+-+..++..+..++.+.|++++|+..+++..+..+.....|..+..+|.
T Consensus 10 ~al~nLG~~~~~~G~~~eAi~~~~kAl~l-~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nLg~~l~ 88 (723)
T 4gyw_A 10 DSLNNLANIKREQGNIEEAVRLYRKALEV-FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLK 88 (723)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 34444444444555555555555444443 12233444445555555555555555555544444444555666667777
Q ss_pred ccCChHHHHHHHHHHHhccccCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCc-cHHHHHHHHHHHHhcCChHHHH
Q 044770 281 RIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKP-NAITYRHLALGCFKSNLVEEGF 359 (464)
Q Consensus 281 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~~~~~a~ 359 (464)
..|++++|.+.|++..+.. +-+...|+.+..+|...|++++|+..|++.++. .| +...+..+...+...|++++|.
T Consensus 89 ~~g~~~~A~~~~~kAl~l~-P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l--~P~~~~a~~~L~~~l~~~g~~~~A~ 165 (723)
T 4gyw_A 89 EMQDVQGALQCYTRAIQIN-PAFADAHSNLASIHKDSGNIPEAIASYRTALKL--KPDFPDAYCNLAHCLQIVCDWTDYD 165 (723)
T ss_dssp HTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCCTTHH
T ss_pred HcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHhhhhhHHHhcccHHHHH
Confidence 7777777777777766632 224566777777777777777777777777763 34 3566677777777777777777
Q ss_pred HHHHHhHHHHhh
Q 044770 360 KALELGMKLITT 371 (464)
Q Consensus 360 ~~~~~~~~~~~~ 371 (464)
+.+++++++...
T Consensus 166 ~~~~kal~l~~~ 177 (723)
T 4gyw_A 166 ERMKKLVSIVAD 177 (723)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHhChh
Confidence 777777665443
No 83
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.24 E-value=5.8e-10 Score=93.40 Aligned_cols=194 Identities=8% Similarity=-0.118 Sum_probs=116.5
Q ss_pred chhhHHHHHHHhcCCCCcccHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCcHhHHHHHHH
Q 044770 129 SYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILAT 208 (464)
Q Consensus 129 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~ 208 (464)
|+..+......+...|++++|...|+...+..-+++...+..+..++...|++++|+..|++..+.. +.+...|..+..
T Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 84 (228)
T 4i17_A 6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YNLANAYIGKSA 84 (228)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CSHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cchHHHHHHHHH
Confidence 4566777777777788888888888877775522666666667777778888888888888777653 224556777777
Q ss_pred HHHhcChhhHHHHHHHHHHhccCCCCh-------hhHHHHHHHHHhhcChhhHHHHHHHhccCCCC--chhhHHHHHHHh
Q 044770 209 AHAVARLYTVAETYVEALEKSMTGNNW-------STLDVLIILYGYLAKGKDLERIWATVQELPNV--RSKSYVLAIEAF 279 (464)
Q Consensus 209 ~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~l~~~~ 279 (464)
++...|++++|...+++..+.. +.+. ..+..+...+...|++++|...++......+. ....+..+...|
T Consensus 85 ~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~ 163 (228)
T 4i17_A 85 AYRDMKNNQEYIATLTEGIKAV-PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGVLF 163 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHHHH
Confidence 7777888888888887776652 2233 33555555666666666666666666655444 445555555555
Q ss_pred hccCChHHHHHHHHHHHhccccCChhhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 044770 280 GRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSM 332 (464)
Q Consensus 280 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 332 (464)
...| ...++.+...+ ..+...|.... ....+.+++|+..|++..+
T Consensus 164 ~~~~-----~~~~~~a~~~~-~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~ 208 (228)
T 4i17_A 164 YNNG-----ADVLRKATPLA-SSNKEKYASEK--AKADAAFKKAVDYLGEAVT 208 (228)
T ss_dssp HHHH-----HHHHHHHGGGT-TTCHHHHHHHH--HHHHHHHHHHHHHHHHHHH
T ss_pred HHHH-----HHHHHHHHhcc-cCCHHHHHHHH--HHHHHHHHHHHHHHHHHhh
Confidence 4333 22333333321 11222232222 2223445666666666655
No 84
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.24 E-value=6.9e-11 Score=102.48 Aligned_cols=125 Identities=11% Similarity=-0.031 Sum_probs=97.8
Q ss_pred HHhhCcHHHHHHHHHHHHHc-------CCCCchhhHHHHHHHhcCCCCcccHHHHHHHHHhC------CC-CCChhhHHH
Q 044770 105 CLDKGVIKLSLEYMKKMRVL-------GHSISYLVFNRLIILNSSPGRRKTIPNILRQMKAD------KV-APHVSTFHI 170 (464)
Q Consensus 105 ~~~~~~~~~a~~~~~~m~~~-------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~-~~~~~~~~~ 170 (464)
....|++++|+..|++..+. ..+....++..+...+...|++++|...+++..+. +- +....++..
T Consensus 11 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 90 (283)
T 3edt_B 11 SSGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNN 90 (283)
T ss_dssp --CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHH
Confidence 45678999999999988762 11234667888999999999999999999998764 21 233567888
Q ss_pred HHHHHHccCChhHHHHHHHHHHhC------CC-CCcHhHHHHHHHHHHhcChhhHHHHHHHHHHhc
Q 044770 171 LMKIEANDHNIEGLMKVYSDMKRS------EV-EPNEVSYCILATAHAVARLYTVAETYVEALEKS 229 (464)
Q Consensus 171 l~~~~~~~~~~~~a~~~~~~m~~~------~~-~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 229 (464)
+...+...|++++|...|++..+. .. +....++..+...+...|++++|...+++..+.
T Consensus 91 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 156 (283)
T 3edt_B 91 LAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEI 156 (283)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 999999999999999999998754 11 223567788888899999999999999887654
No 85
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.23 E-value=1.1e-09 Score=91.77 Aligned_cols=195 Identities=13% Similarity=0.094 Sum_probs=144.9
Q ss_pred CChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCcHhHHHHHHHHHHhcChhhHHHHHHHHHHhccCCCChhhHHHHH
Q 044770 163 PHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLI 242 (464)
Q Consensus 163 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 242 (464)
.|...+......+...|++++|...|++..+....++...+..+..++...|++++|+..+++..+.. +.+..++..+.
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~ 83 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YNLANAYIGKS 83 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CSHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cchHHHHHHHH
Confidence 45677888888899999999999999998876543677777778888999999999999999988753 33567788888
Q ss_pred HHHHhhcChhhHHHHHHHhccCCCCch-------hhHHHHHHHhhccCChHHHHHHHHHHHhccccC--ChhhHHHHHHH
Q 044770 243 ILYGYLAKGKDLERIWATVQELPNVRS-------KSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLK--ATEQYNSVISV 313 (464)
Q Consensus 243 ~~~~~~~~~~~a~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~li~~ 313 (464)
.++...|++++|...++......+.+. ..|..+...+...|++++|...|++..+.. +. +...|..+..+
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~l~~~ 162 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVT-SKKWKTDALYSLGVL 162 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSS-CHHHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcC-CCcccHHHHHHHHHH
Confidence 999999999999999998888555555 457778888888999999999999988742 22 34567777777
Q ss_pred HHhcCChhHHHHHHHHHHhCCCCccHHHHHHHHHHHHhcCChHHHHHHHHHhHH
Q 044770 314 YCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMK 367 (464)
Q Consensus 314 ~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 367 (464)
|...| ...++++...+. .+...|.... ....+.+++|...++++++
T Consensus 163 ~~~~~-----~~~~~~a~~~~~-~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~ 208 (228)
T 4i17_A 163 FYNNG-----ADVLRKATPLAS-SNKEKYASEK--AKADAAFKKAVDYLGEAVT 208 (228)
T ss_dssp HHHHH-----HHHHHHHGGGTT-TCHHHHHHHH--HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHH-----HHHHHHHHhccc-CCHHHHHHHH--HHHHHHHHHHHHHHHHHhh
Confidence 75544 344555555432 2344444333 2344668899999998853
No 86
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.23 E-value=3.8e-10 Score=109.86 Aligned_cols=165 Identities=8% Similarity=-0.025 Sum_probs=102.6
Q ss_pred hhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCcHhHHHHHHHHHHhcChhhHHHHHHHHHHhccCCCChhhHHHHHHH
Q 044770 165 VSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIIL 244 (464)
Q Consensus 165 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 244 (464)
...|+.|...+.+.|++++|++.|++..+.. +-+..+|..+..+|.+.|++++|+..|++..+.. +.+...+..+..+
T Consensus 9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~nLg~~ 86 (723)
T 4gyw_A 9 ADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMGNT 86 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 4455566666666666666666666655542 1134555666666666666666666666665542 2234556666666
Q ss_pred HHhhcChhhHHHHHHHhccCCCCchhhHHHHHHHhhccCChHHHHHHHHHHHhccccCChhhHHHHHHHHHhcCChhHHH
Q 044770 245 YGYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKAS 324 (464)
Q Consensus 245 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~ 324 (464)
+...|++++|.+.+++..+..+.+...+..+...|...|++++|...|++..+.. +-+...|..+..+|...|++++|.
T Consensus 87 l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~-P~~~~a~~~L~~~l~~~g~~~~A~ 165 (723)
T 4gyw_A 87 LKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLK-PDFPDAYCNLAHCLQIVCDWTDYD 165 (723)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCCTTHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHhhhhhHHHhcccHHHHH
Confidence 6666666666666666665555555667777777777777777777777777632 224566777777777777777777
Q ss_pred HHHHHHHh
Q 044770 325 GLLKEMSM 332 (464)
Q Consensus 325 ~~~~~m~~ 332 (464)
+.+++..+
T Consensus 166 ~~~~kal~ 173 (723)
T 4gyw_A 166 ERMKKLVS 173 (723)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 77766554
No 87
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.22 E-value=8.8e-10 Score=96.07 Aligned_cols=189 Identities=11% Similarity=-0.067 Sum_probs=113.0
Q ss_pred HHccCChhHHHHHHHHHHhC----CCCCc-HhHHHHHHHHHHhcChhhHHHHHHHHHHhccCCC-C----hhhHHHHHHH
Q 044770 175 EANDHNIEGLMKVYSDMKRS----EVEPN-EVSYCILATAHAVARLYTVAETYVEALEKSMTGN-N----WSTLDVLIIL 244 (464)
Q Consensus 175 ~~~~~~~~~a~~~~~~m~~~----~~~p~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~-~----~~~~~~l~~~ 244 (464)
|...|++++|...|++..+. |-.++ ..+|+.+..+|.+.|++++|+..+++........ + ..++..+..+
T Consensus 47 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~ 126 (292)
T 1qqe_A 47 YRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEI 126 (292)
T ss_dssp HHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 44455555555555544321 11111 3345555555666666666666555554321110 1 2345556666
Q ss_pred HHhh-cChhhHHHHHHHhccCCC----C--chhhHHHHHHHhhccCChHHHHHHHHHHHhccccCChh------hHHHHH
Q 044770 245 YGYL-AKGKDLERIWATVQELPN----V--RSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATE------QYNSVI 311 (464)
Q Consensus 245 ~~~~-~~~~~a~~~~~~~~~~~~----~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~------~~~~li 311 (464)
|... |++++|...++......+ . ...++..+...+.+.|++++|...|++..+........ .|..+.
T Consensus 127 ~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg 206 (292)
T 1qqe_A 127 LENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKG 206 (292)
T ss_dssp HHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHH
T ss_pred HHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHH
Confidence 6664 777777666666544111 1 12357788889999999999999999988754322211 567788
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCCCccHH------HHHHHHHHHH--hcCChHHHHHHHHHh
Q 044770 312 SVYCKNGFIDKASGLLKEMSMNGCKPNAI------TYRHLALGCF--KSNLVEEGFKALELG 365 (464)
Q Consensus 312 ~~~~~~~~~~~a~~~~~~m~~~g~~p~~~------~~~~ll~~~~--~~~~~~~a~~~~~~~ 365 (464)
.++...|++++|...|++..+ +.|+.. .+..++.++. ..+++++|+..|+.+
T Consensus 207 ~~~~~~g~~~~A~~~~~~al~--l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~ 266 (292)
T 1qqe_A 207 LCQLAATDAVAAARTLQEGQS--EDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNF 266 (292)
T ss_dssp HHHHHTTCHHHHHHHHHGGGC--C---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTS
T ss_pred HHHHHcCCHHHHHHHHHHHHh--hCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccC
Confidence 889999999999999999877 344321 3444555554 446788888888776
No 88
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.21 E-value=1.9e-08 Score=85.96 Aligned_cols=249 Identities=13% Similarity=0.080 Sum_probs=163.2
Q ss_pred HHHHccCChhHHHHHHHHHHhCCCCCcHhHHHHHHHHHHhcChhhHHHHHHHHHHhccCCCChhhHHHHHHHHHhhcChh
Q 044770 173 KIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGK 252 (464)
Q Consensus 173 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 252 (464)
+-..-.|++..++.-...+.. .. +...-.-+.+++...|++... ....|....+..+...+ . .
T Consensus 21 kn~fy~G~yq~~i~e~~~~~~--~~-~~~~~~~~~Rs~iAlg~~~~~---------~~~~~~~~a~~~la~~~-~----~ 83 (310)
T 3mv2_B 21 KQNYYTGNFVQCLQEIEKFSK--VT-DNTLLFYKAKTLLALGQYQSQ---------DPTSKLGKVLDLYVQFL-D----T 83 (310)
T ss_dssp HHHHTTTCHHHHTHHHHTSSC--CC-CHHHHHHHHHHHHHTTCCCCC---------CSSSTTHHHHHHHHHHH-T----T
T ss_pred HHHHHhhHHHHHHHHHHhcCc--cc-hHHHHHHHHHHHHHcCCCccC---------CCCCHHHHHHHHHHHHh-c----c
Confidence 334456777777663322211 12 222333445667666766531 11223322333333332 2 1
Q ss_pred hHHHHHHHhccCCCCchhhHHHHHHHhhccCChHHHHHHHHHHHhccc-cCChhhHHHHHHHHHhcCChhHHHHHHHHHH
Q 044770 253 DLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQ-LKATEQYNSVISVYCKNGFIDKASGLLKEMS 331 (464)
Q Consensus 253 ~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 331 (464)
.+...++.+......+..++..+..++...|++++|++++.+....+. .-+...+..++..+.+.|+.+.|.+.+++|.
T Consensus 84 ~a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 84 KNIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp TCCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 256777776665444455566888899999999999999999876543 2366778889999999999999999999998
Q ss_pred hCCCCc-----cHHHHHHHHHH--HHhcC--ChHHHHHHHHHhHHHHhhhhhcCCCCcHHHHHHHHHHHHhcCChhhHHH
Q 044770 332 MNGCKP-----NAITYRHLALG--CFKSN--LVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAEN 402 (464)
Q Consensus 332 ~~g~~p-----~~~~~~~ll~~--~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 402 (464)
+ ..| +..+...+..+ ....| ++++|..+|+++. ...|+..+...++.++.+.|++++|.+
T Consensus 164 ~--~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~---------~~~p~~~~~~lLln~~~~~g~~~eAe~ 232 (310)
T 3mv2_B 164 N--AIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELS---------QTFPTWKTQLGLLNLHLQQRNIAEAQG 232 (310)
T ss_dssp H--HSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHH---------TTSCSHHHHHHHHHHHHHHTCHHHHHH
T ss_pred h--cCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHH---------HhCCCcccHHHHHHHHHHcCCHHHHHH
Confidence 8 466 35666666666 33334 8999999999982 334553333455558999999999999
Q ss_pred HHHHHHHcC-----C----CCcHHHHHHHHHHHHHcCCChhHHHHHHHhCCCCCCHHH
Q 044770 403 LFEELKKAN-----Y----TKYTFVYNTLIKAYVKAKINDPNLLRRMILGGARPDAET 451 (464)
Q Consensus 403 ~~~~m~~~~-----~----~p~~~~~~~li~~~~~~g~~a~~~~~~m~~~~~~p~~~t 451 (464)
.++.+.+.- - +.|..+.-.+|......|++|.+++.++++. .|+..-
T Consensus 233 ~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk~a~~l~~qL~~~--~P~hp~ 288 (310)
T 3mv2_B 233 IVELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGLDTEDLTNQLVKL--DHEHAF 288 (310)
T ss_dssp HHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTCTTHHHHHHHHHT--TCCCHH
T ss_pred HHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHhChHHHHHHHHHHHh--CCCChH
Confidence 999776531 0 2345577566666666788999999999985 465443
No 89
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.20 E-value=2.4e-09 Score=93.33 Aligned_cols=233 Identities=9% Similarity=0.027 Sum_probs=164.3
Q ss_pred ccHHHHHHHHHhCCCCCChhhHHHHHHHHHcc--C-ChhHHHHHHHHHHhCCCCCcHhHHHHHHHHHHhcChhhHHHHHH
Q 044770 147 KTIPNILRQMKADKVAPHVSTFHILMKIEAND--H-NIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYV 223 (464)
Q Consensus 147 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~-~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~ 223 (464)
.+|.+++.+..+.- ++....| .+ + +. + ++++|...|++. ...|...|++++|...|
T Consensus 2 ~~a~~~~~~a~k~~-~~~~~~~-~~---~-~~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~ 60 (292)
T 1qqe_A 2 SDPVELLKRAEKKG-VPSSGFM-KL---F-SGSDSYKFEEAADLCVQA---------------ATIYRLRKELNLAGDSF 60 (292)
T ss_dssp CCHHHHHHHHHHHS-SCCCTHH-HH---H-SCCSHHHHHHHHHHHHHH---------------HHHHHHTTCTHHHHHHH
T ss_pred CcHHHHHHHHHHHh-CcCCCcc-hh---c-CCCCCccHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHH
Confidence 46777887776642 3322223 22 2 32 2 488888888876 34577899999999999
Q ss_pred HHHHhc----cCCCC-hhhHHHHHHHHHhhcChhhHHHHHHHhccC----CCC--chhhHHHHHHHhhcc-CChHHHHHH
Q 044770 224 EALEKS----MTGNN-WSTLDVLIILYGYLAKGKDLERIWATVQEL----PNV--RSKSYVLAIEAFGRI-AQVSRAEEL 291 (464)
Q Consensus 224 ~~~~~~----~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~--~~~~~~~l~~~~~~~-g~~~~a~~~ 291 (464)
.+.... |.+++ ..+++.+..+|...|++++|...++..... ... ...++..+...|... |++++|...
T Consensus 61 ~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~ 140 (292)
T 1qqe_A 61 LKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDC 140 (292)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHH
Confidence 987554 22222 468889999999999999999999887651 111 134688899999996 999999999
Q ss_pred HHHHHhccccC-C----hhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCccH------HHHHHHHHHHHhcCChHHHHH
Q 044770 292 WLEMQSVKQLK-A----TEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNA------ITYRHLALGCFKSNLVEEGFK 360 (464)
Q Consensus 292 ~~~~~~~~~~~-~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~------~~~~~ll~~~~~~~~~~~a~~ 360 (464)
|++..+..... + ..+++.+...+.+.|++++|+..|++..+....... ..|..+..++...|++++|..
T Consensus 141 ~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~ 220 (292)
T 1qqe_A 141 YELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAAR 220 (292)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 99887632211 1 356888999999999999999999999985432221 256777788899999999999
Q ss_pred HHHHhHHHHhhhhhcCCCCc------HHHHHHHHHHHH--hcCChhhHHHHHHHHHH
Q 044770 361 ALELGMKLITTKKVRSSTPW------LETTLSIIEIFA--EKGDVGNAENLFEELKK 409 (464)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~p~------~~~~~~li~~~~--~~g~~~~A~~~~~~m~~ 409 (464)
.++.+++ +.|+ ...+..++.++. ..+++++|...|+.+..
T Consensus 221 ~~~~al~---------l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~ 268 (292)
T 1qqe_A 221 TLQEGQS---------EDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMR 268 (292)
T ss_dssp HHHGGGC---------C---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSC
T ss_pred HHHHHHh---------hCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCc
Confidence 9999853 3332 223445566664 34567777777766654
No 90
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.18 E-value=5.1e-09 Score=89.52 Aligned_cols=143 Identities=11% Similarity=0.039 Sum_probs=60.6
Q ss_pred HHHHHHHHHHcCCCCchhhHHHHHHHhcCCCCcccHHHHHHHHHhCCC-CCChhhHHHHHHHHHccCChhHHHHHHHHHH
Q 044770 114 SLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKV-APHVSTFHILMKIEANDHNIEGLMKVYSDMK 192 (464)
Q Consensus 114 a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~ 192 (464)
|+..|++....+ .++..++..+..++...|++++|++++.+.+..+- .-+...+..++..+.+.|+.+.|.+.+++|.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 444444444332 22333333444444455555555555555443321 1233344444455555555555555555554
Q ss_pred hCCCCC-----cHhHHHHHHHHHH--hcC--hhhHHHHHHHHHHhccCCCChhhHHHHHHHHHhhcChhhHHHHHHHh
Q 044770 193 RSEVEP-----NEVSYCILATAHA--VAR--LYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATV 261 (464)
Q Consensus 193 ~~~~~p-----~~~~~~~li~~~~--~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 261 (464)
+. .| +..+...++.++. ..| ++.+|..+|+++.+. .|+..+...++.++...|++++|++.++.+
T Consensus 164 ~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l 237 (310)
T 3mv2_B 164 NA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELL 237 (310)
T ss_dssp HH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred hc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 33 33 1333333333311 112 455555555554332 122222223333445555555555555443
No 91
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=99.07 E-value=1.6e-07 Score=87.68 Aligned_cols=201 Identities=9% Similarity=0.013 Sum_probs=117.4
Q ss_pred HHHHHHHHHHhccCCCChhhHHHHHHHHHhhcChhhHHHHHHHhccCCCCchhhHHHHHHHhhccCChHHHHHHHHHHHh
Q 044770 218 VAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQS 297 (464)
Q Consensus 218 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 297 (464)
.+..+|+++... .+.++..|...+..+...|+.+.|..++++.... +.+...+.. |+...+.++. ++.+.+
T Consensus 197 Rv~~~ye~al~~-~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~~l~~~----y~~~~e~~~~---~~~l~~ 267 (493)
T 2uy1_A 197 RMHFIHNYILDS-FYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDGMFLSLY----YGLVMDEEAV---YGDLKR 267 (493)
T ss_dssp HHHHHHHHHHHH-TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSSHHHHH----HHHHTTCTHH---HHHHHH
T ss_pred HHHHHHHHHHHc-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcHHHHHH----HHhhcchhHH---HHHHHH
Confidence 455666666654 3344566666666666777777777777766665 333322222 2111111111 222221
Q ss_pred cc------------ccCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCccHHHHHHHHHHHH-hcCChHHHHHHHHH
Q 044770 298 VK------------QLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCF-KSNLVEEGFKALEL 364 (464)
Q Consensus 298 ~~------------~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~-~~~~~~~a~~~~~~ 364 (464)
.- .......|...+..+.+.+..+.|..+|... .. ..++...|......-. ..++.+.|..+|+.
T Consensus 268 ~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~-~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~ 345 (493)
T 2uy1_A 268 KYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GN-EGVGPHVFIYCAFIEYYATGSRATPYNIFSS 345 (493)
T ss_dssp HTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TT-SCCCHHHHHHHHHHHHHHHCCSHHHHHHHHH
T ss_pred HHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hC-CCCChHHHHHHHHHHHHHCCChHHHHHHHHH
Confidence 10 0112245666677777778899999999988 32 1224444432222212 23468999999999
Q ss_pred hHHHHhhhhhcCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCcHHHHHHHHHHHHHcCCC--hhHHHHHHHh
Q 044770 365 GMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKIN--DPNLLRRMIL 442 (464)
Q Consensus 365 ~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~--a~~~~~~m~~ 442 (464)
+++ ..+-. ...+...++...+.|+.+.|..+|+++. .....|...+.--...|+. +.++++++..
T Consensus 346 al~------~~~~~--~~~~~~yid~e~~~~~~~~aR~l~er~~-----k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 346 GLL------KHPDS--TLLKEEFFLFLLRIGDEENARALFKRLE-----KTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHH------HCTTC--HHHHHHHHHHHHHHTCHHHHHHHHHHSC-----CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHH------HCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHH-----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 853 22222 3345567777788899999999998873 2567888888877777874 5566766653
No 92
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.07 E-value=5e-09 Score=79.20 Aligned_cols=129 Identities=14% Similarity=0.074 Sum_probs=70.9
Q ss_pred HHHHHHHHHHhhCcHHHHHHHHHHHHHcCCCCchhhHHHHHHHhcCCCCcccHHHHHHHHHhCCCCCChhhHHHHHHHHH
Q 044770 97 LYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEA 176 (464)
Q Consensus 97 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 176 (464)
.|..+...+...|++++|+.+++++.+.+ +.+...+..+...+...|++++|...++++.+.+ +.+...+..+...+.
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 80 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYY 80 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHH
Confidence 34455555555666666666666555542 2234445555555555555666666555555433 334445555556666
Q ss_pred ccCChhHHHHHHHHHHhCCCCCcHhHHHHHHHHHHhcChhhHHHHHHHHHHh
Q 044770 177 NDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEK 228 (464)
Q Consensus 177 ~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 228 (464)
..|++++|.+.++++.+.. +.+...+..+...+.+.|++++|...++++..
T Consensus 81 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 131 (136)
T 2fo7_A 81 KQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALE 131 (136)
T ss_dssp TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHHc
Confidence 6666666666666655432 22344555555666666666666666665544
No 93
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.06 E-value=6.9e-09 Score=88.81 Aligned_cols=186 Identities=10% Similarity=-0.051 Sum_probs=118.8
Q ss_pred chhhHHHHHHHhcCCCCcccHHHHHHHHHhCCCCCC---hhhHHHHHHHHHccCChhHHHHHHHHHHhCCC-CC-cHhHH
Q 044770 129 SYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPH---VSTFHILMKIEANDHNIEGLMKVYSDMKRSEV-EP-NEVSY 203 (464)
Q Consensus 129 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~-~p-~~~~~ 203 (464)
+...+-.+...+.+.|++++|...|+.+.+.. +.+ ...+..+..++.+.|++++|...|++..+... .| ....+
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 92 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG-RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAE 92 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHH
Confidence 45556666667777888888888888877653 223 45666777778888888888888888776521 11 23455
Q ss_pred HHHHHHHHh--------cChhhHHHHHHHHHHhccCCCChhhHHHHHHHHHhhcChhhHHHHHHHhccCCCCchhhHHHH
Q 044770 204 CILATAHAV--------ARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSKSYVLA 275 (464)
Q Consensus 204 ~~li~~~~~--------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l 275 (464)
..+..++.. .|++++|...|+++.+.. +.+......+.......+.. ...+..+
T Consensus 93 ~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~a~~~~~~~~~~~-----------------~~~~~~l 154 (261)
T 3qky_A 93 YERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY-PNHELVDDATQKIRELRAKL-----------------ARKQYEA 154 (261)
T ss_dssp HHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC-TTCTTHHHHHHHHHHHHHHH-----------------HHHHHHH
T ss_pred HHHHHHHHHhcccccccchhHHHHHHHHHHHHHHC-cCchhHHHHHHHHHHHHHHH-----------------HHHHHHH
Confidence 666666777 778888888888776652 12222222211110000000 0114567
Q ss_pred HHHhhccCChHHHHHHHHHHHhccccC--ChhhHHHHHHHHHhc----------CChhHHHHHHHHHHhC
Q 044770 276 IEAFGRIAQVSRAEELWLEMQSVKQLK--ATEQYNSVISVYCKN----------GFIDKASGLLKEMSMN 333 (464)
Q Consensus 276 ~~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~li~~~~~~----------~~~~~a~~~~~~m~~~ 333 (464)
...|.+.|++++|...|+.+.+..... ....+..+..+|... |++++|...|+++.+.
T Consensus 155 a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~ 224 (261)
T 3qky_A 155 ARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQI 224 (261)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHH
Confidence 788888999999999999888743221 234677777778765 8889999999998874
No 94
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.04 E-value=7.9e-09 Score=89.65 Aligned_cols=173 Identities=13% Similarity=0.042 Sum_probs=83.8
Q ss_pred HHHHhhcCccChhchHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCCchhHHHHHHHHHhhcChHHHHHHhhhcCCCCCc
Q 044770 15 QSWMREGFPVHRGEIFHSINRLRKLQLNKRALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQGEKLFCCIPKDYQN 94 (464)
Q Consensus 15 ~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 94 (464)
..+...-.|.+...+..+...+.+.|++++|+..|+.+.+.. +-+...+..+...+...|++++|...++++....|+
T Consensus 106 ~~~l~~~lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~ 183 (287)
T 3qou_A 106 RALLDXVLPREEELXAQQAMQLMQESNYTDALPLLXDAWQLS--NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQD 183 (287)
T ss_dssp HHHHHHHSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT--TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCS
T ss_pred HHHHHHHcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC--CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcc
Confidence 333333344444555555555566666666666666655532 223345555555666666666666666665554333
Q ss_pred hhHH-HHHHHHHHhhCcHHHHHHHHHHHHHcCCCCchhhHHHHHHHhcCCCCcccHHHHHHHHHhCCCC-CChhhHHHHH
Q 044770 95 ELLY-NNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVA-PHVSTFHILM 172 (464)
Q Consensus 95 ~~~~-~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~ 172 (464)
.... ......+...++.++|+..+++..... +.+...+..+...+...|++++|...|.++.+.... .+...+..++
T Consensus 184 ~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~ 262 (287)
T 3qou_A 184 TRYQGLVAQIELLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQ 262 (287)
T ss_dssp HHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHH
T ss_pred hHHHHHHHHHHHHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHH
Confidence 2211 112222344444555555555555432 223444555555555555555555555555443200 1133444455
Q ss_pred HHHHccCChhHHHHHHHH
Q 044770 173 KIEANDHNIEGLMKVYSD 190 (464)
Q Consensus 173 ~~~~~~~~~~~a~~~~~~ 190 (464)
..+...|+.++|...|++
T Consensus 263 ~~~~~~g~~~~a~~~~r~ 280 (287)
T 3qou_A 263 EILAALGTGDALASXYRR 280 (287)
T ss_dssp HHHHHHCTTCHHHHHHHH
T ss_pred HHHHHcCCCCcHHHHHHH
Confidence 555555555555544443
No 95
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.04 E-value=1.1e-08 Score=77.35 Aligned_cols=128 Identities=13% Similarity=0.110 Sum_probs=59.4
Q ss_pred HHHHHHHHHccCChhHHHHHHHHHHhCCCCCcHhHHHHHHHHHHhcChhhHHHHHHHHHHhccCCCChhhHHHHHHHHHh
Q 044770 168 FHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGY 247 (464)
Q Consensus 168 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 247 (464)
|..+...+...|++++|..+|+++.+.. +.+...+..+...+...|++++|..+++++...
T Consensus 4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~------------------ 64 (136)
T 2fo7_A 4 WYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL------------------ 64 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH------------------
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHH------------------
Confidence 3444445555555555555555544332 123334444444444455555555555444433
Q ss_pred hcChhhHHHHHHHhccCCCCchhhHHHHHHHhhccCChHHHHHHHHHHHhccccCChhhHHHHHHHHHhcCChhHHHHHH
Q 044770 248 LAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLL 327 (464)
Q Consensus 248 ~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~ 327 (464)
.+.+...+..+...+...|++++|.+.++.+.+.. +.+...+..+...+...|++++|...+
T Consensus 65 -----------------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~ 126 (136)
T 2fo7_A 65 -----------------DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYY 126 (136)
T ss_dssp -----------------CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred -----------------CCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHH
Confidence 22222233444444455555555555555544421 223344445555555555555555555
Q ss_pred HHHHh
Q 044770 328 KEMSM 332 (464)
Q Consensus 328 ~~m~~ 332 (464)
+++.+
T Consensus 127 ~~~~~ 131 (136)
T 2fo7_A 127 QKALE 131 (136)
T ss_dssp HHHHH
T ss_pred HHHHc
Confidence 55444
No 96
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.04 E-value=1.6e-08 Score=86.43 Aligned_cols=185 Identities=6% Similarity=-0.096 Sum_probs=121.6
Q ss_pred CChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCc----HhHHHHHHHHHHhcChhhHHHHHHHHHHhccCC--CChh
Q 044770 163 PHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPN----EVSYCILATAHAVARLYTVAETYVEALEKSMTG--NNWS 236 (464)
Q Consensus 163 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~----~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~ 236 (464)
.+...+..+...+.+.|++++|...|+++.+.. |+ ...+..+..++.+.|++++|...|++..+.... ....
T Consensus 13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 90 (261)
T 3qky_A 13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG--RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQ 90 (261)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC--SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC--CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHH
Confidence 445566667777888888888888888887753 32 456777778888888888888888888775321 1234
Q ss_pred hHHHHHHHHHh--------hcChhhHHHHHHHhccCCCCchhhHHHHHHHhhccCChHHHHHHHHHHHhccccCChhhHH
Q 044770 237 TLDVLIILYGY--------LAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYN 308 (464)
Q Consensus 237 ~~~~l~~~~~~--------~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 308 (464)
.+..+..++.. .|++++|...++.+....+.+......+. .+..+... -...+.
T Consensus 91 a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~--------------~~~~~~~~----~~~~~~ 152 (261)
T 3qky_A 91 AEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQ--------------KIRELRAK----LARKQY 152 (261)
T ss_dssp HHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHH--------------HHHHHHHH----HHHHHH
T ss_pred HHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHH--------------HHHHHHHH----HHHHHH
Confidence 45556666666 66677777766666553333332221111 11111110 011246
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCCCc--cHHHHHHHHHHHHhc----------CChHHHHHHHHHhHH
Q 044770 309 SVISVYCKNGFIDKASGLLKEMSMNGCKP--NAITYRHLALGCFKS----------NLVEEGFKALELGMK 367 (464)
Q Consensus 309 ~li~~~~~~~~~~~a~~~~~~m~~~g~~p--~~~~~~~ll~~~~~~----------~~~~~a~~~~~~~~~ 367 (464)
.+...|...|++++|+..|+++.+..... ....+..+..++... |++++|...++.+++
T Consensus 153 ~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~ 223 (261)
T 3qky_A 153 EAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQ 223 (261)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHH
Confidence 67888999999999999999998843211 245677777777766 889999999999953
No 97
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.01 E-value=6.9e-09 Score=82.83 Aligned_cols=160 Identities=6% Similarity=-0.084 Sum_probs=87.0
Q ss_pred HHHHHHHHHhhcChHHHHHHhhhcCCC-CCchhHHHHHHHHHHhhCcHHHHHHHHHHHHHcCCCCchhhHHHHHHH-hcC
Q 044770 65 YSYLLEFTIKNHGISQGEKLFCCIPKD-YQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIIL-NSS 142 (464)
Q Consensus 65 ~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~-~~~ 142 (464)
+..+...+...|++++|...|++.... +.+...+..+...+...|++++|+..|++..... |+...+..+... +..
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~~~ 86 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNSYKSLIAKLELHQ 86 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHHHHHHHHHHHh
Confidence 344445555566666666666655554 2244555555666666666666666665554432 222222211111 111
Q ss_pred CCCcccHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCC-cHhHHHHHHHHHHhcChhhHHHH
Q 044770 143 PGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEP-NEVSYCILATAHAVARLYTVAET 221 (464)
Q Consensus 143 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~~~~~li~~~~~~~~~~~a~~ 221 (464)
.++...|...+++..+.. +.+...+..+...+...|++++|...|+++.+....+ +...+..+...+...|+.++|..
T Consensus 87 ~~~~~~a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~ 165 (176)
T 2r5s_A 87 QAAESPELKRLEQELAAN-PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIAS 165 (176)
T ss_dssp HHTSCHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHH
T ss_pred hcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHH
Confidence 122234566666665543 3345666666777777777777777777776653222 23456666667777777777777
Q ss_pred HHHHHH
Q 044770 222 YVEALE 227 (464)
Q Consensus 222 ~~~~~~ 227 (464)
.|++..
T Consensus 166 ~y~~al 171 (176)
T 2r5s_A 166 KYRRQL 171 (176)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 666554
No 98
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.99 E-value=1.9e-08 Score=82.64 Aligned_cols=133 Identities=17% Similarity=0.089 Sum_probs=85.1
Q ss_pred HHHHHHhcChhhHHHHHHHHHHhccCCCChhhHHHHHHHHHhhcChhhHHHHHHHhccCCCCchhhHHHHHHHhhccCC-
Q 044770 206 LATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQ- 284 (464)
Q Consensus 206 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~- 284 (464)
+..++.+.|++++|+..|++..+. .+.+...+..+..++...|++++|...++.+....+.+...+..+...|...|+
T Consensus 60 lg~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~ 138 (208)
T 3urz_A 60 LALAYKKNRNYDKAYLFYKELLQK-APNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQ 138 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHH
Confidence 666777777777777777777665 234566777777777777777777777777777666666677777777655443
Q ss_pred -hHHHHHHHHHHHhccccCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCccHHHHH
Q 044770 285 -VSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYR 343 (464)
Q Consensus 285 -~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~ 343 (464)
.+.+...+..... ..|....+.....++...|++++|...|++.++ +.|+.....
T Consensus 139 ~~~~~~~~~~~~~~--~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~--l~P~~~~~~ 194 (208)
T 3urz_A 139 EKKKLETDYKKLSS--PTKMQYARYRDGLSKLFTTRYEKARNSLQKVIL--RFPSTEAQK 194 (208)
T ss_dssp HHHHHHHHHC---C--CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTT--TSCCHHHHH
T ss_pred HHHHHHHHHHHHhC--CCchhHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCHHHHH
Confidence 3344555555443 122222344455566677888888888888887 566654433
No 99
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.99 E-value=2.6e-08 Score=81.88 Aligned_cols=136 Identities=10% Similarity=-0.045 Sum_probs=103.0
Q ss_pred HHHHHHHHhhcChhhHHHHHHHhccCCCCchhhHHHHHHHhhccCChHHHHHHHHHHHhccccCChhhHHHHHHHHHhcC
Q 044770 239 DVLIILYGYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNG 318 (464)
Q Consensus 239 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~ 318 (464)
..+..++...|++++|...++......+.+...+..+...|...|++++|...|++..+.. +.+...|..+...|...|
T Consensus 58 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~ 136 (208)
T 3urz_A 58 TELALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYYYLTA 136 (208)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHh
Confidence 3478889999999999999999999888888899999999999999999999999999843 346778888888887665
Q ss_pred C--hhHHHHHHHHHHhCCCCccHHHHHHHHHHHHhcCChHHHHHHHHHhHHHHhhhhhcCCCCcHHHHHH
Q 044770 319 F--IDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLS 386 (464)
Q Consensus 319 ~--~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 386 (464)
. ...+...++.... ..|....+.....++...|++++|+..|+++ ....|+......
T Consensus 137 ~~~~~~~~~~~~~~~~--~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~a---------l~l~P~~~~~~~ 195 (208)
T 3urz_A 137 EQEKKKLETDYKKLSS--PTKMQYARYRDGLSKLFTTRYEKARNSLQKV---------ILRFPSTEAQKT 195 (208)
T ss_dssp HHHHHHHHHHHC---C--CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHH---------TTTSCCHHHHHH
T ss_pred HHHHHHHHHHHHHHhC--CCchhHHHHHHHHHHHHccCHHHHHHHHHHH---------HHhCCCHHHHHH
Confidence 4 3445556655542 2333334444555667789999999999999 456777554333
No 100
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.98 E-value=7.5e-09 Score=101.22 Aligned_cols=172 Identities=8% Similarity=-0.049 Sum_probs=126.1
Q ss_pred HhhcchHHHHHHHHHHH--------HcCCCCCCchhHHHHHHHHHhhcChHHHHHHhhhcCCC-CCchhHHHHHHHHHHh
Q 044770 37 RKLQLNKRALEVMEWVI--------RERPYRPKELDYSYLLEFTIKNHGISQGEKLFCCIPKD-YQNELLYNNLVIACLD 107 (464)
Q Consensus 37 ~~~~~~~~A~~~~~~~~--------~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~li~~~~~ 107 (464)
...|++++|++.++... +.. +.+...+..+...+...|++++|...|++..+. +.+...|..+..++..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~--p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF--SESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC--TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc--ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHH
Confidence 67788888888888887 321 345567777788888888888888888887766 3466788888888888
Q ss_pred hCcHHHHHHHHHHHHHcCCCCchhhHHHHHHHhcCCCCcccHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhHHHHH
Q 044770 108 KGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKV 187 (464)
Q Consensus 108 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 187 (464)
.|++++|+..|++..+.. +-+...+..+..++.+.|++++ ...|++..+.. +.+...|..+..++.+.|++++|...
T Consensus 480 ~g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~ 556 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTF-PGELAPKLALAATAELAGNTDE-HKFYQTVWSTN-DGVISAAFGLARARSAEGDRVGAVRT 556 (681)
T ss_dssp HTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-CchHHHHHHHHHHHHHcCCHHHHHHH
Confidence 888888888888888764 3356777788888888888888 88888887754 45667778888888888888888888
Q ss_pred HHHHHhCCCCCc-HhHHHHHHHHHHhcCh
Q 044770 188 YSDMKRSEVEPN-EVSYCILATAHAVARL 215 (464)
Q Consensus 188 ~~~m~~~~~~p~-~~~~~~li~~~~~~~~ 215 (464)
|++..+. .|+ ...+..+..++...++
T Consensus 557 ~~~al~l--~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 557 LDEVPPT--SRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHTSCTT--STTHHHHHHHHHHHTC----
T ss_pred HHhhccc--CcccHHHHHHHHHHHHccCC
Confidence 8887655 344 4556666666554443
No 101
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.97 E-value=1.1e-06 Score=82.19 Aligned_cols=358 Identities=8% Similarity=-0.057 Sum_probs=216.0
Q ss_pred hhchHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCCchhHHHHHHHHHhhcC-hHHHHHHhhhcCCC----CCchhHHHH
Q 044770 26 RGEIFHSINRLRKLQLNKRALEVMEWVIRERPYRPKELDYSYLLEFTIKNHG-ISQGEKLFCCIPKD----YQNELLYNN 100 (464)
Q Consensus 26 ~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~a~~~~~~~~~~----~~~~~~~~~ 100 (464)
...|...+..+-. ++++.+..+|+..... .|+...|...+....+.+. .+....+|+..... ..+...|..
T Consensus 15 R~vyer~l~~~P~-~~~e~~~~iferal~~---~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~ 90 (493)
T 2uy1_A 15 SAIMEHARRLYMS-KDYRSLESLFGRCLKK---SYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKE 90 (493)
T ss_dssp HHHHHHHHHHHHT-TCHHHHHHHHHHHSTT---CCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHH
T ss_pred HHHHHHHHHHCCC-CCHHHHHHHHHHHhcc---CCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHH
Confidence 3344444444433 7899999999999872 4788899888888777763 45566677665432 346678888
Q ss_pred HHHHHH----hhCcHHHHHHHHHHHHHcCCCCchhhHHHHHHHhcC-------------CCCcccHHHHHHHHHhCCCCC
Q 044770 101 LVIACL----DKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSS-------------PGRRKTIPNILRQMKADKVAP 163 (464)
Q Consensus 101 li~~~~----~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~-------------~~~~~~a~~~~~~~~~~~~~~ 163 (464)
.+..+. ..++.+.+..+|++.+......-...|......-.. .+.+..|..+++.+...--..
T Consensus 91 Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~~~ 170 (493)
T 2uy1_A 91 YIEEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRGW 170 (493)
T ss_dssp HHHHTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHhhc
Confidence 887654 356788899999999873211112222222211100 012223344444443210011
Q ss_pred ChhhHHHHHHHHHccC--C-----hhHHHHHHHHHHhCCCCCcHhHHHHHHHHHHhcChhhHHHHHHHHHHhccCCCChh
Q 044770 164 HVSTFHILMKIEANDH--N-----IEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWS 236 (464)
Q Consensus 164 ~~~~~~~l~~~~~~~~--~-----~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 236 (464)
+...|...+..-...+ - .+.+..+|+++.... +.+...|...+.-+.+.|+.+.|..++++.... +.+..
T Consensus 171 s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~ 247 (493)
T 2uy1_A 171 SVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMF 247 (493)
T ss_dssp SHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSH
T ss_pred cHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHH
Confidence 3345555555432221 1 345678898887653 345777888888888899999999999999887 33332
Q ss_pred hHHHHHHHHHhhcChhhH-HHHHHHhccC---------CCCchhhHHHHHHHhhccCChHHHHHHHHHHHhccccCChhh
Q 044770 237 TLDVLIILYGYLAKGKDL-ERIWATVQEL---------PNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQ 306 (464)
Q Consensus 237 ~~~~l~~~~~~~~~~~~a-~~~~~~~~~~---------~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 306 (464)
.+. .|....+.+.. ..+.+..... +......|...+....+.++.+.|..+|++. .. ...+...
T Consensus 248 l~~----~y~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~-~~~~~~v 321 (493)
T 2uy1_A 248 LSL----YYGLVMDEEAVYGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GN-EGVGPHV 321 (493)
T ss_dssp HHH----HHHHHTTCTHHHHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TT-SCCCHHH
T ss_pred HHH----HHHhhcchhHHHHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hC-CCCChHH
Confidence 222 23222222222 1222211100 0112245667777777788899999999999 32 1223334
Q ss_pred HHHHHHHHHh-cCChhHHHHHHHHHHhCCCCccHHHHHHHHHHHHhcCChHHHHHHHHHhHHHHhhhhhcCCCCcHHHHH
Q 044770 307 YNSVISVYCK-NGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTL 385 (464)
Q Consensus 307 ~~~li~~~~~-~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~p~~~~~~ 385 (464)
|......-.. .++.+.|..+|+...+.. +-++..+...+.-....|+.+.|..+|+.+ . .....|.
T Consensus 322 ~i~~A~lE~~~~~d~~~ar~ife~al~~~-~~~~~~~~~yid~e~~~~~~~~aR~l~er~-------~-----k~~~lw~ 388 (493)
T 2uy1_A 322 FIYCAFIEYYATGSRATPYNIFSSGLLKH-PDSTLLKEEFFLFLLRIGDEENARALFKRL-------E-----KTSRMWD 388 (493)
T ss_dssp HHHHHHHHHHHHCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHS-------C-----CBHHHHH
T ss_pred HHHHHHHHHHHCCChHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH-------H-----HHHHHHH
Confidence 4332222222 336999999999998753 113444555666667889999999999987 2 2567788
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHH
Q 044770 386 SIIEIFAEKGDVGNAENLFEELKK 409 (464)
Q Consensus 386 ~li~~~~~~g~~~~A~~~~~~m~~ 409 (464)
..+..-...|+.+.+..++++..+
T Consensus 389 ~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 389 SMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHH
Confidence 888887888999999999988774
No 102
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.96 E-value=4.5e-07 Score=78.36 Aligned_cols=104 Identities=10% Similarity=-0.017 Sum_probs=48.8
Q ss_pred CCcccHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChh--HHHHHHHHHHhCCCCCcHhHHHHHHHHHHhcCh------
Q 044770 144 GRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIE--GLMKVYSDMKRSEVEPNEVSYCILATAHAVARL------ 215 (464)
Q Consensus 144 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~------ 215 (464)
+++++++.+++.+.+.. +.+-.+|+.-...+.+.|.++ ++++.++++.+.... |...|+.-...+.+.+.
T Consensus 124 ~~~~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~-N~sAW~~R~~ll~~l~~~~~~~~ 201 (306)
T 3dra_A 124 FDPYREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLK-NNSAWSHRFFLLFSKKHLATDNT 201 (306)
T ss_dssp CCTHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHSSGGGCCHHH
T ss_pred CCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccchhhh
Confidence 34455555555555433 344445544444444445554 555555555544322 44445444444444333
Q ss_pred hhHHHHHHHHHHhccCCCChhhHHHHHHHHHhhcC
Q 044770 216 YTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAK 250 (464)
Q Consensus 216 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 250 (464)
++++++.++.+... .+-|...|+.....+.+.|+
T Consensus 202 ~~eEl~~~~~aI~~-~p~n~SaW~y~~~ll~~~~~ 235 (306)
T 3dra_A 202 IDEELNYVKDKIVK-CPQNPSTWNYLLGIHERFDR 235 (306)
T ss_dssp HHHHHHHHHHHHHH-CSSCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHh-CCCCccHHHHHHHHHHhcCC
Confidence 45555555555443 22344444444444444443
No 103
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.96 E-value=1.1e-08 Score=81.62 Aligned_cols=163 Identities=11% Similarity=0.123 Sum_probs=127.0
Q ss_pred hchHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCCchhHHHHHHHHHhhcChHHHHHHhhhcCCCCCchhHHHHHHHH-H
Q 044770 27 GEIFHSINRLRKLQLNKRALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQGEKLFCCIPKDYQNELLYNNLVIA-C 105 (464)
Q Consensus 27 ~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~li~~-~ 105 (464)
..+......+...|++++|+..|+.+.+.. +.+...+..+...+...|++++|...|+++....|+...+..+... +
T Consensus 7 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~ 84 (176)
T 2r5s_A 7 EQLLKQVSELLQQGEHAQALNVIQTLSDEL--QSRGDVKLAKADCLLETKQFELAQELLATIPLEYQDNSYKSLIAKLEL 84 (176)
T ss_dssp TTHHHHHHHHHHTTCHHHHHHHHHTSCHHH--HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccCChHHHHHHHHHHH
Confidence 456677788899999999999999987743 3456788899999999999999999999998875544333322212 2
Q ss_pred HhhCcHHHHHHHHHHHHHcCCCCchhhHHHHHHHhcCCCCcccHHHHHHHHHhCCCCC-ChhhHHHHHHHHHccCChhHH
Q 044770 106 LDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAP-HVSTFHILMKIEANDHNIEGL 184 (464)
Q Consensus 106 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a 184 (464)
...+...+|+..+++..+.. +-+...+..+...+...|++++|...|+++.+....+ +...+..+...+...|+.++|
T Consensus 85 ~~~~~~~~a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A 163 (176)
T 2r5s_A 85 HQQAAESPELKRLEQELAAN-PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAI 163 (176)
T ss_dssp HHHHTSCHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHH
T ss_pred HhhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcH
Confidence 22233345788999988863 3357889999999999999999999999998864222 355788899999999999999
Q ss_pred HHHHHHHH
Q 044770 185 MKVYSDMK 192 (464)
Q Consensus 185 ~~~~~~m~ 192 (464)
...|++..
T Consensus 164 ~~~y~~al 171 (176)
T 2r5s_A 164 ASKYRRQL 171 (176)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99998765
No 104
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.94 E-value=1.3e-08 Score=99.45 Aligned_cols=128 Identities=9% Similarity=-0.046 Sum_probs=58.7
Q ss_pred HHHHHHHHHHhcChhhHHHHHHHHHHhccCCCChhhHHHHHHHHHhhcChhhHHHHHHHhccCCCCchhhHHHHHHHhhc
Q 044770 202 SYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGR 281 (464)
Q Consensus 202 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 281 (464)
.+..+..++.+.|++++|+..|+++.+.. +.+...+..+..++...|++++|...|+...+..+.+...+..+..+|.+
T Consensus 435 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~ 513 (681)
T 2pzi_A 435 LPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELLTGDYDSATKHFTEVLDTFPGELAPKLALAATAEL 513 (681)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Confidence 34444444444444444444444444331 12333444444444444444444444444444333334444445555555
Q ss_pred cCChHHHHHHHHHHHhccccCChhhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 044770 282 IAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSM 332 (464)
Q Consensus 282 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 332 (464)
.|++++ ...|++..+.. +.+...|..+..++.+.|++++|+..|++..+
T Consensus 514 ~g~~~~-~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 562 (681)
T 2pzi_A 514 AGNTDE-HKFYQTVWSTN-DGVISAAFGLARARSAEGDRVGAVRTLDEVPP 562 (681)
T ss_dssp HTCCCT-TCHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHTSCT
T ss_pred cCChHH-HHHHHHHHHhC-CchHHHHHHHHHHHHHcCCHHHHHHHHHhhcc
Confidence 555555 55555544422 12334455555555555555555555555444
No 105
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.94 E-value=1.5e-07 Score=78.27 Aligned_cols=56 Identities=11% Similarity=0.061 Sum_probs=31.1
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCcc----HHHHHHHHHHHHhcCChHHHHHHHHHhHH
Q 044770 310 VISVYCKNGFIDKASGLLKEMSMNGCKPN----AITYRHLALGCFKSNLVEEGFKALELGMK 367 (464)
Q Consensus 310 li~~~~~~~~~~~a~~~~~~m~~~g~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 367 (464)
+...|.+.|++++|+..|+++++. .|+ ...+..+..++.+.|+.++|.+.++.+..
T Consensus 153 ~a~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~ 212 (225)
T 2yhc_A 153 VAEYYTERGAWVAVVNRVEGMLRD--YPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA 212 (225)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHH--STTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCcHHHHHHHHHHHHHH--CcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHh
Confidence 444555666666666666666553 222 13455555566666666666666665543
No 106
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.94 E-value=5.3e-09 Score=80.92 Aligned_cols=122 Identities=6% Similarity=-0.041 Sum_probs=63.2
Q ss_pred HHHHhhcChHHHHHHhhhcCCCCC-chhHHHHHHHHHHhhCcHHHHHHHHHHHHHcCCCCchhhHHHHHHHhcCCCCccc
Q 044770 70 EFTIKNHGISQGEKLFCCIPKDYQ-NELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKT 148 (464)
Q Consensus 70 ~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~ 148 (464)
.++...|++++|+..++......| +...+-.+...|.+.|++++|++.|++.++.. +-+..+|..+..++.+.|++++
T Consensus 5 ~~~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~~ 83 (150)
T 4ga2_A 5 SMRRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ-ERDPKAHRFLGLLYELEENTDK 83 (150)
T ss_dssp --CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCchHH
Confidence 334445556666666655554422 23444555556666666666666666665542 2244555555555555555555
Q ss_pred HHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhHHHHH-HHHHHh
Q 044770 149 IPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKV-YSDMKR 193 (464)
Q Consensus 149 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~-~~~m~~ 193 (464)
|...|+...+.. +-+...|..+...|.+.|++++|.+. +++..+
T Consensus 84 A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~ 128 (150)
T 4ga2_A 84 AVECYRRSVELN-PTQKDLVLKIAELLCKNDVTDGRAKYWVERAAK 128 (150)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 555555555532 33344555555555555555544433 344443
No 107
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.93 E-value=3.2e-08 Score=82.45 Aligned_cols=184 Identities=9% Similarity=0.016 Sum_probs=124.8
Q ss_pred ChhchHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCC-chhHHHHHHHHHhhcChHHHHHHhhhcCCCCCch----hHHH
Q 044770 25 HRGEIFHSINRLRKLQLNKRALEVMEWVIRERPYRPK-ELDYSYLLEFTIKNHGISQGEKLFCCIPKDYQNE----LLYN 99 (464)
Q Consensus 25 ~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~----~~~~ 99 (464)
++..+......+.+.|++++|+..|+.+.+..+..|. ...+..+..++.+.|++++|...|+++....|+. .++.
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 3455667778889999999999999999885433222 3567788889999999999999999987664432 2444
Q ss_pred HHHHHHHh------------------hCcHHHHHHHHHHHHHcCCCCc-hhhHHHHHHHhcCCCCcccHHHHHHHHHhCC
Q 044770 100 NLVIACLD------------------KGVIKLSLEYMKKMRVLGHSIS-YLVFNRLIILNSSPGRRKTIPNILRQMKADK 160 (464)
Q Consensus 100 ~li~~~~~------------------~~~~~~a~~~~~~m~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 160 (464)
.+..++.. .|++++|+..|+++++.. |+ ...+...... ..+...+.
T Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--P~~~~a~~a~~~l----------~~~~~~~~--- 147 (225)
T 2yhc_A 83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGY--PNSQYTTDATKRL----------VFLKDRLA--- 147 (225)
T ss_dssp HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTC--TTCTTHHHHHHHH----------HHHHHHHH---
T ss_pred HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHC--cCChhHHHHHHHH----------HHHHHHHH---
Confidence 44444443 456777777777776642 32 2222211110 00001110
Q ss_pred CCCChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCc----HhHHHHHHHHHHhcChhhHHHHHHHHHHhcc
Q 044770 161 VAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPN----EVSYCILATAHAVARLYTVAETYVEALEKSM 230 (464)
Q Consensus 161 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~----~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 230 (464)
.....+...+.+.|++++|...|+++.+. .|+ ...+..+..++.+.|++++|.+.++.+...+
T Consensus 148 -----~~~~~~a~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~ 214 (225)
T 2yhc_A 148 -----KYEYSVAEYYTERGAWVAVVNRVEGMLRD--YPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANS 214 (225)
T ss_dssp -----HHHHHHHHHHHHHTCHHHHHHHHHHHHHH--STTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCC
T ss_pred -----HHHHHHHHHHHHcCcHHHHHHHHHHHHHH--CcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC
Confidence 01134567888999999999999999876 333 2467788899999999999999999887764
No 108
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.93 E-value=8.5e-08 Score=84.12 Aligned_cols=230 Identities=10% Similarity=0.020 Sum_probs=136.6
Q ss_pred CCCcccHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCcHhHHHHHHHHHHhcChhhHHHHH
Q 044770 143 PGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETY 222 (464)
Q Consensus 143 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~ 222 (464)
.|++++|.+++++..+.. +.. + +...++++.|...|.+. ...|...|++++|...
T Consensus 4 ~~~~~eA~~~~~~a~k~~-~~~------~---~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~ 58 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYL-KTS------F---MKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAKDA 58 (307)
T ss_dssp HHHHHHHHHHHHHHHHHH-CCC------S---SSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHc-ccc------c---cCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHHHH
Confidence 466778888888776531 111 0 11135666666666554 3456667777777777
Q ss_pred HHHHHhccCCC-----ChhhHHHHHHHHHhhcChhhHHHHHHHhcc----CCCC--chhhHHHHHHHhhccCChHHHHHH
Q 044770 223 VEALEKSMTGN-----NWSTLDVLIILYGYLAKGKDLERIWATVQE----LPNV--RSKSYVLAIEAFGRIAQVSRAEEL 291 (464)
Q Consensus 223 ~~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~--~~~~~~~l~~~~~~~g~~~~a~~~ 291 (464)
|.+........ -..++..+..+|...|++++|...++.... ...+ ...++..+...|.. |++++|...
T Consensus 59 ~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~ 137 (307)
T 2ifu_A 59 YLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHL 137 (307)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHH
Confidence 77664431111 134566667777777777777777776544 1111 13456777778877 888888888
Q ss_pred HHHHHhccccC-----ChhhHHHHHHHHHhcCChhHHHHHHHHHHhC----CCCccH-HHHHHHHHHHHhcCChHHHHHH
Q 044770 292 WLEMQSVKQLK-----ATEQYNSVISVYCKNGFIDKASGLLKEMSMN----GCKPNA-ITYRHLALGCFKSNLVEEGFKA 361 (464)
Q Consensus 292 ~~~~~~~~~~~-----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----g~~p~~-~~~~~ll~~~~~~~~~~~a~~~ 361 (464)
|++..+..... ...+++.+...|.+.|++++|+..|++..+. +..+.. ..+..+...+...|++++|...
T Consensus 138 ~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~ 217 (307)
T 2ifu_A 138 YQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKC 217 (307)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 88776532111 1356777888888888888888888887652 221211 2455566667777888888888
Q ss_pred HHHhHHHHhhhhhcCCCCcHHHHHHHHHHHHhcCChhhHHHH
Q 044770 362 LELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENL 403 (464)
Q Consensus 362 ~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 403 (464)
|++++ ..+ .............++.++ ..|+.+.+..+
T Consensus 218 ~~~al-~~p---~~~~~~e~~~l~~l~~~~-~~~d~~~~~~~ 254 (307)
T 2ifu_A 218 VRESY-SIP---GFSGSEDCAALEDLLQAY-DEQDEEQLLRV 254 (307)
T ss_dssp HHHHT-TST---TSTTSHHHHHHHHHHHHH-HTTCHHHHHHH
T ss_pred HHHHh-CCC---CCCCCHHHHHHHHHHHHH-HhcCHHHHHHH
Confidence 88873 211 000011122334455544 56676655553
No 109
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.92 E-value=6.8e-07 Score=77.23 Aligned_cols=222 Identities=8% Similarity=-0.006 Sum_probs=160.7
Q ss_pred hhCcHHHHHHHHHHHHHcCCCCchhhHHHHHHHhcCCC--CcccHHHHHHHHHhCCCCCChhhHHHHHHHH----Hcc--
Q 044770 107 DKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPG--RRKTIPNILRQMKADKVAPHVSTFHILMKIE----AND-- 178 (464)
Q Consensus 107 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~-- 178 (464)
+....++|+++++.++..+ +-+..+|+.--..+...+ +++++++.++.+.... +-+..+|+.-...+ ...
T Consensus 45 ~~e~s~~aL~~t~~~L~~n-P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~~~~~~l~~ 122 (306)
T 3dra_A 45 AEEYSERALHITELGINEL-ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLIIGQIMELNNN 122 (306)
T ss_dssp TTCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHHHHHHHTTT
T ss_pred cCCCCHHHHHHHHHHHHHC-cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHHHHHHHhccc
Confidence 3344468999998888864 234556777777777777 8889999998888764 45556666554444 444
Q ss_pred -CChhHHHHHHHHHHhCCCCCcHhHHHHHHHHHHhcChhh--HHHHHHHHHHhccCCCChhhHHHHHHHHHhhcC-----
Q 044770 179 -HNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYT--VAETYVEALEKSMTGNNWSTLDVLIILYGYLAK----- 250 (464)
Q Consensus 179 -~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~--~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----- 250 (464)
+++++++.+++.+.+.. +.+..+|+.-...+.+.|.++ +++++++++.+.. +-|...|+.-...+...+.
T Consensus 123 ~~~~~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d-~~N~sAW~~R~~ll~~l~~~~~~~ 200 (306)
T 3dra_A 123 DFDPYREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD-LKNNSAWSHRFFLLFSKKHLATDN 200 (306)
T ss_dssp CCCTHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHSSGGGCCHH
T ss_pred cCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccchhh
Confidence 78899999999998764 347788888777788888888 9999999998864 3466677766666666665
Q ss_pred -hhhHHHHHHHhccCCCCchhhHHHHHHHhhccCChHH-HHHHHHHHHhcc--ccCChhhHHHHHHHHHhcCChhHHHHH
Q 044770 251 -GKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSR-AEELWLEMQSVK--QLKATEQYNSVISVYCKNGFIDKASGL 326 (464)
Q Consensus 251 -~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-a~~~~~~~~~~~--~~~~~~~~~~li~~~~~~~~~~~a~~~ 326 (464)
++++.+.++......+.+...|+.+...+.+.|+... +..+.....+.+ .+.++..+..+...|.+.|+.++|.++
T Consensus 201 ~~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~ 280 (306)
T 3dra_A 201 TIDEELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTV 280 (306)
T ss_dssp HHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHH
Confidence 6777777777777777777788877777777776444 445555555432 234667788888888888888888888
Q ss_pred HHHHHh
Q 044770 327 LKEMSM 332 (464)
Q Consensus 327 ~~~m~~ 332 (464)
++.+.+
T Consensus 281 ~~~l~~ 286 (306)
T 3dra_A 281 YDLLKS 286 (306)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 888875
No 110
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.91 E-value=1e-06 Score=76.63 Aligned_cols=165 Identities=8% Similarity=0.009 Sum_probs=117.0
Q ss_pred HHHHHhhcChhhHHHHHHHhccCCCCchh------hHHHHHHHhhccCChHHHHHHHHHHHhcccc-CC----hhhHHHH
Q 044770 242 IILYGYLAKGKDLERIWATVQELPNVRSK------SYVLAIEAFGRIAQVSRAEELWLEMQSVKQL-KA----TEQYNSV 310 (464)
Q Consensus 242 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~----~~~~~~l 310 (464)
+..+...|++++|...++........... .+..+...+...|++++|...|+...+.... ++ ..+|+.+
T Consensus 82 i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~l 161 (293)
T 3u3w_A 82 VIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAI 161 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHH
Confidence 34445555555555555555442222111 2335667777888999999999998873322 22 2368899
Q ss_pred HHHHHhcCChhHHHHHHHHHHh----C-CCCcc-HHHHHHHHHHHHhcCChHHHHHHHHHhHHHHhhhhhcCCCC-cHHH
Q 044770 311 ISVYCKNGFIDKASGLLKEMSM----N-GCKPN-AITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTP-WLET 383 (464)
Q Consensus 311 i~~~~~~~~~~~a~~~~~~m~~----~-g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~p-~~~~ 383 (464)
...|...|++++|+..|+++.+ . +..+. ..++..+...|...|++++|...++++++.... .+..+ -..+
T Consensus 162 g~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~---~~~~~~~~~~ 238 (293)
T 3u3w_A 162 ANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCR---INSMALIGQL 238 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH---TTBCTTHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH---cCcHHHHHHH
Confidence 9999999999999999999874 1 22222 247888899999999999999999999876542 23333 3677
Q ss_pred HHHHHHHHHhcCC-hhhHHHHHHHHHH
Q 044770 384 TLSIIEIFAEKGD-VGNAENLFEELKK 409 (464)
Q Consensus 384 ~~~li~~~~~~g~-~~~A~~~~~~m~~ 409 (464)
|..+...|.+.|+ +++|.+.+++...
T Consensus 239 ~~~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 239 YYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 8899999999995 6999999888764
No 111
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.91 E-value=4.4e-08 Score=85.92 Aligned_cols=226 Identities=10% Similarity=-0.036 Sum_probs=143.6
Q ss_pred hhCcHHHHHHHHHHHHHcCCCCchhhHHHHHHHhcCCCCcccHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhHHHH
Q 044770 107 DKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMK 186 (464)
Q Consensus 107 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 186 (464)
..|++++|.+++++..+.. +.. .+...++++.|...|.+. ...|...|++++|..
T Consensus 3 ~~~~~~eA~~~~~~a~k~~-~~~---------~~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~ 57 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYL-KTS---------FMKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAKD 57 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHH-CCC---------SSSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHc-ccc---------ccCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHHH
Confidence 3567788888887776531 111 111146677777776654 345667788888887
Q ss_pred HHHHHHhC----CCCC-cHhHHHHHHHHHHhcChhhHHHHHHHHHHhccCCC-----ChhhHHHHHHHHHhhcChhhHHH
Q 044770 187 VYSDMKRS----EVEP-NEVSYCILATAHAVARLYTVAETYVEALEKSMTGN-----NWSTLDVLIILYGYLAKGKDLER 256 (464)
Q Consensus 187 ~~~~m~~~----~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~a~~ 256 (464)
.|.+..+. +-.+ -..+|+.+..+|.+.|++++|+..|++....-... ...++..+..+|.. |++++|..
T Consensus 58 ~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~ 136 (307)
T 2ifu_A 58 AYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVH 136 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHH
Confidence 77766532 1111 13466777777888888888888887765431111 13456677777777 88888888
Q ss_pred HHHHhccCC----C--CchhhHHHHHHHhhccCChHHHHHHHHHHHhccc----cCC-hhhHHHHHHHHHhcCChhHHHH
Q 044770 257 IWATVQELP----N--VRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQ----LKA-TEQYNSVISVYCKNGFIDKASG 325 (464)
Q Consensus 257 ~~~~~~~~~----~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~----~~~-~~~~~~li~~~~~~~~~~~a~~ 325 (464)
.++...... . ....++..+...|...|++++|...|++..+... .+. ...+..+..++...|++++|..
T Consensus 137 ~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~ 216 (307)
T 2ifu_A 137 LYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQK 216 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 887765511 1 1134677888999999999999999998876321 111 2256667777888899999999
Q ss_pred HHHHHHhCCCC-cc---HHHHHHHHHHHHhcCChHHHHH
Q 044770 326 LLKEMSMNGCK-PN---AITYRHLALGCFKSNLVEEGFK 360 (464)
Q Consensus 326 ~~~~m~~~g~~-p~---~~~~~~ll~~~~~~~~~~~a~~ 360 (464)
.|++.. .... ++ ......++.++ ..++.+....
T Consensus 217 ~~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 217 CVRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp HHHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred HHHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHH
Confidence 999988 3211 11 12344455554 5566665555
No 112
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.90 E-value=5.5e-08 Score=84.35 Aligned_cols=166 Identities=9% Similarity=-0.066 Sum_probs=91.4
Q ss_pred CCChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCcHhHHHHHHHHHHhcChhhHHHHHHHHHHhccCCCChhh-HHH
Q 044770 162 APHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWST-LDV 240 (464)
Q Consensus 162 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~ 240 (464)
+.+...+..+...+...|++++|...|++..+.. +-+...+..+...+.+.|++++|...++++.... |+... ...
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~~~ 190 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQD--QDTRYQGLV 190 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGG--CSHHHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhh--cchHHHHHH
Confidence 3344455556666667777777777777766542 2244556666666777777777777776665432 23221 112
Q ss_pred HHHHHHhhcChhhHHHHHHHhccCCCCchhhHHHHHHHhhccCChHHHHHHHHHHHhccccC-ChhhHHHHHHHHHhcCC
Q 044770 241 LIILYGYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLK-ATEQYNSVISVYCKNGF 319 (464)
Q Consensus 241 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~~~ 319 (464)
....+...++.+.+...++......+.+...+..+...|...|++++|...|.++.+..... +...+..++..+...|+
T Consensus 191 ~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~ 270 (287)
T 3qou_A 191 AQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGT 270 (287)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCT
T ss_pred HHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCC
Confidence 22224445555555555555555444555555566666666666666666666655532111 13455555666666666
Q ss_pred hhHHHHHHHHH
Q 044770 320 IDKASGLLKEM 330 (464)
Q Consensus 320 ~~~a~~~~~~m 330 (464)
.++|...|++.
T Consensus 271 ~~~a~~~~r~a 281 (287)
T 3qou_A 271 GDALASXYRRQ 281 (287)
T ss_dssp TCHHHHHHHHH
T ss_pred CCcHHHHHHHH
Confidence 66655555543
No 113
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.89 E-value=2.4e-07 Score=76.20 Aligned_cols=176 Identities=10% Similarity=-0.040 Sum_probs=106.4
Q ss_pred cHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCcHhHHHHHHHHHHhcC----hhhHHHHHH
Q 044770 148 TIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVAR----LYTVAETYV 223 (464)
Q Consensus 148 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~----~~~~a~~~~ 223 (464)
+|.+.|++..+.| +...+..+...|...+++++|...|++..+.| +...+..+...|.. + ++++|..+|
T Consensus 4 eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~ 76 (212)
T 3rjv_A 4 EPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLA 76 (212)
T ss_dssp CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHH
T ss_pred hHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHH
Confidence 4556666666543 45555566666666677777777777766553 34455555555555 4 666777777
Q ss_pred HHHHhccCCCChhhHHHHHHHHHh----hcChhhHHHHHHHhccCCCC--chhhHHHHHHHhhc----cCChHHHHHHHH
Q 044770 224 EALEKSMTGNNWSTLDVLIILYGY----LAKGKDLERIWATVQELPNV--RSKSYVLAIEAFGR----IAQVSRAEELWL 293 (464)
Q Consensus 224 ~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~--~~~~~~~l~~~~~~----~g~~~~a~~~~~ 293 (464)
++..+.| ++..+..+...|.. .++.++|..+++......+. ....+..|...|.. .+++++|...|+
T Consensus 77 ~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~ 153 (212)
T 3rjv_A 77 EKAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFK 153 (212)
T ss_dssp HHHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHH
T ss_pred HHHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence 7665543 34455555555554 55666666666666554442 24446666666666 667777777777
Q ss_pred HHHhccccCChhhHHHHHHHHHhc-C-----ChhHHHHHHHHHHhCCC
Q 044770 294 EMQSVKQLKATEQYNSVISVYCKN-G-----FIDKASGLLKEMSMNGC 335 (464)
Q Consensus 294 ~~~~~~~~~~~~~~~~li~~~~~~-~-----~~~~a~~~~~~m~~~g~ 335 (464)
+..+. ..+...+..+...|... | ++++|..+|+...+.|.
T Consensus 154 ~A~~~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 154 GSSSL--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHHHT--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHHHc--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 77664 22444566666666543 2 67777777777776653
No 114
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.88 E-value=1.2e-08 Score=78.81 Aligned_cols=56 Identities=7% Similarity=0.011 Sum_probs=21.5
Q ss_pred HHHHhcCCCCcccHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhHHHHHHHHHH
Q 044770 136 LIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMK 192 (464)
Q Consensus 136 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~ 192 (464)
+...|.+.|++++|.+.|++.++.. +-+..+|..+..++.+.|++++|...|++..
T Consensus 37 la~~y~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al 92 (150)
T 4ga2_A 37 FAKLYYEAKEYDLAKKYICTYINVQ-ERDPKAHRFLGLLYELEENTDKAVECYRRSV 92 (150)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCchHHHHHHHHHHH
Confidence 3333444444444444444433322 2233333333344444444444444443333
No 115
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.85 E-value=1.2e-07 Score=78.02 Aligned_cols=177 Identities=8% Similarity=-0.085 Sum_probs=110.1
Q ss_pred HHHHHHHHHHHcCCCCCCchhHHHHHHHHHhhcChHHHHHHhhhcCCCCCchhHHHHHHHHHHhhC----cHHHHHHHHH
Q 044770 44 RALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQGEKLFCCIPKDYQNELLYNNLVIACLDKG----VIKLSLEYMK 119 (464)
Q Consensus 44 ~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~li~~~~~~~----~~~~a~~~~~ 119 (464)
+|++.|+...+. -+...+..+...|...+++++|...|++..+. .+...+..+...|.. + ++++|+..|+
T Consensus 4 eA~~~~~~aa~~----g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~-g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~ 77 (212)
T 3rjv_A 4 EPGSQYQQQAEA----GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQ-GDGDALALLAQLKIR-NPQQADYPQARQLAE 77 (212)
T ss_dssp CTTHHHHHHHHT----TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT-TCHHHHHHHHHHTTS-STTSCCHHHHHHHHH
T ss_pred hHHHHHHHHHHC----CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHc-CCCCCCHHHHHHHHH
Confidence 345555555552 24556666666666677777777777665543 345556666666665 5 6777777777
Q ss_pred HHHHcCCCCchhhHHHHHHHhcC----CCCcccHHHHHHHHHhCCCC-CChhhHHHHHHHHHc----cCChhHHHHHHHH
Q 044770 120 KMRVLGHSISYLVFNRLIILNSS----PGRRKTIPNILRQMKADKVA-PHVSTFHILMKIEAN----DHNIEGLMKVYSD 190 (464)
Q Consensus 120 ~m~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~----~~~~~~a~~~~~~ 190 (464)
+..+.| +...+..|...|.. .+++++|...|++..+.|.. .+...+..|...|.. .+++++|...|++
T Consensus 78 ~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~ 154 (212)
T 3rjv_A 78 KAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKG 154 (212)
T ss_dssp HHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHH
T ss_pred HHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHH
Confidence 776654 45566666666665 66777777777777765411 125566666666666 6677777777777
Q ss_pred HHhCCCCCcHhHHHHHHHHHHhc-C-----hhhHHHHHHHHHHhccC
Q 044770 191 MKRSEVEPNEVSYCILATAHAVA-R-----LYTVAETYVEALEKSMT 231 (464)
Q Consensus 191 m~~~~~~p~~~~~~~li~~~~~~-~-----~~~~a~~~~~~~~~~~~ 231 (464)
..+. ..+...+..+...|... | ++++|..+|+...+.|.
T Consensus 155 A~~~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 155 SSSL--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHHT--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHHc--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 7665 22334555555555543 2 67777777777766653
No 116
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.83 E-value=8.1e-08 Score=92.21 Aligned_cols=151 Identities=9% Similarity=-0.089 Sum_probs=65.3
Q ss_pred CcHHHHHHHHHHHHHcCCCCchhhHHHHHHHhcCCCCcccHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhHHHHHH
Q 044770 109 GVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVY 188 (464)
Q Consensus 109 ~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 188 (464)
|++++|++.|++..+.. +.+...+..+...+...|++++|.+.|++..+.. +.+...+..+...+...|++++|.+.|
T Consensus 3 g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~ 80 (568)
T 2vsy_A 3 ADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVLL 80 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 45555555555554432 2234445555555555555555555555555432 333445555555555555555555555
Q ss_pred HHHHhCCCCCcHhHHHHHHHHHHhcChhhHHHHHHHHHHhccCCCChhhHHHHHHHHHhh---cChhhHHHHHHHhcc
Q 044770 189 SDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYL---AKGKDLERIWATVQE 263 (464)
Q Consensus 189 ~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~a~~~~~~~~~ 263 (464)
++..+.. +.+...+..+..++.+.|++++|.+.+++..+.. +.+...+..+..++... |+.++|.+.++....
T Consensus 81 ~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~ 156 (568)
T 2vsy_A 81 QQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVA 156 (568)
T ss_dssp HHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHH
T ss_pred HHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHh
Confidence 5554432 1134445555555555555555555555554431 22334444444444444 444444444444443
No 117
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.83 E-value=7.2e-08 Score=92.56 Aligned_cols=153 Identities=8% Similarity=-0.087 Sum_probs=102.2
Q ss_pred hcchHHHHHHHHHHHHcCCCCCCchhHHHHHHHHHhhcChHHHHHHhhhcCCCCC-chhHHHHHHHHHHhhCcHHHHHHH
Q 044770 39 LQLNKRALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQGEKLFCCIPKDYQ-NELLYNNLVIACLDKGVIKLSLEY 117 (464)
Q Consensus 39 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~ 117 (464)
.|++++|++.++.+.+.. +.+...+..+...+...|++++|.+.|++..+..| +...|..+...+...|++++|++.
T Consensus 2 ~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR--PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp ---------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 467788888888877632 23456777788888888888888888888766633 567788888888888888888888
Q ss_pred HHHHHHcCCCCchhhHHHHHHHhcCCCCcccHHHHHHHHHhCCCCCChhhHHHHHHHHHcc---CChhHHHHHHHHHHhC
Q 044770 118 MKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEAND---HNIEGLMKVYSDMKRS 194 (464)
Q Consensus 118 ~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~a~~~~~~m~~~ 194 (464)
|++..+.. +.+...+..+...+.+.|++++|.+.|++..+.. +.+...+..+...+... |++++|.+.+++..+.
T Consensus 80 ~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 80 LQQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 88887763 3356677778888888888888888888877654 44566777777888887 8888888888887765
Q ss_pred C
Q 044770 195 E 195 (464)
Q Consensus 195 ~ 195 (464)
+
T Consensus 158 ~ 158 (568)
T 2vsy_A 158 G 158 (568)
T ss_dssp T
T ss_pred C
Confidence 3
No 118
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.83 E-value=7e-08 Score=78.84 Aligned_cols=160 Identities=10% Similarity=-0.001 Sum_probs=105.3
Q ss_pred hhcChhhHHHHHHHhccCCCCchhhHHHHHHHhhccCChHHHHHHHHHHHhc----ccc-CChhhHHHHHHHHHhcCChh
Q 044770 247 YLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSV----KQL-KATEQYNSVISVYCKNGFID 321 (464)
Q Consensus 247 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~-~~~~~~~~li~~~~~~~~~~ 321 (464)
..|++++|.+.++.+...+......+..+...+...|++++|...+++..+. +.. .....+..+...+...|+++
T Consensus 4 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 83 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWD 83 (203)
T ss_dssp ---CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred ccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence 3455556655444444444444556777777777788888888887776642 111 23456777888888889999
Q ss_pred HHHHHHHHHHhC----CCCc--cHHHHHHHHHHHHhcCChHHHHHHHHHhHHHHhhhhhcCCC-CcHHHHHHHHHHHHhc
Q 044770 322 KASGLLKEMSMN----GCKP--NAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSST-PWLETTLSIIEIFAEK 394 (464)
Q Consensus 322 ~a~~~~~~m~~~----g~~p--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-p~~~~~~~li~~~~~~ 394 (464)
+|...+++..+. +-.| ....+..+...+...|++++|...++++++.... .+.. ....++..+...+...
T Consensus 84 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~---~~~~~~~~~~~~~la~~~~~~ 160 (203)
T 3gw4_A 84 AARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQ---ADDQVAIACAFRGLGDLAQQE 160 (203)
T ss_dssp HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHh---ccchHHHHHHHHHHHHHHHHC
Confidence 998888877652 2122 2345667777888889999999999988765321 1111 1234467888888899
Q ss_pred CChhhHHHHHHHHHH
Q 044770 395 GDVGNAENLFEELKK 409 (464)
Q Consensus 395 g~~~~A~~~~~~m~~ 409 (464)
|++++|...+++..+
T Consensus 161 g~~~~A~~~~~~al~ 175 (203)
T 3gw4_A 161 KNLLEAQQHWLRARD 175 (203)
T ss_dssp TCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHH
Confidence 999999988887764
No 119
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.82 E-value=1e-06 Score=76.63 Aligned_cols=171 Identities=6% Similarity=-0.092 Sum_probs=101.7
Q ss_pred HHHHHHccCChhHHHHHHHHHHhCC-CCCcHh----HHHHHHHHHHhcChhhHHHHHHHHHHhccCCCChhhHHHHHHHH
Q 044770 171 LMKIEANDHNIEGLMKVYSDMKRSE-VEPNEV----SYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILY 245 (464)
Q Consensus 171 l~~~~~~~~~~~~a~~~~~~m~~~~-~~p~~~----~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 245 (464)
.+..+...|++++|..++++..+.. ..|+.. .+..+...+...+++++|+..+++........+... .
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~-~------ 153 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVY-Q------ 153 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTT-H------
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHH-H------
Confidence 3556677788888888887776542 122211 222344455556677777777777765322211110 0
Q ss_pred HhhcChhhHHHHHHHhccCCCCchhhHHHHHHHhhccCChHHHHHHHHHHHhc-----cccC-ChhhHHHHHHHHHhcCC
Q 044770 246 GYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSV-----KQLK-ATEQYNSVISVYCKNGF 319 (464)
Q Consensus 246 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~~~~-~~~~~~~li~~~~~~~~ 319 (464)
...+++.+...|...|++++|...|+++.+. +..+ ...+|..+...|.+.|+
T Consensus 154 ----------------------~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~ 211 (293)
T 3u3w_A 154 ----------------------NLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSR 211 (293)
T ss_dssp ----------------------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTC
T ss_pred ----------------------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhH
Confidence 0112555666666666666666666665521 1111 23367777888888888
Q ss_pred hhHHHHHHHHHHh----CCCCcc-HHHHHHHHHHHHhcCC-hHHHHHHHHHhHHHHh
Q 044770 320 IDKASGLLKEMSM----NGCKPN-AITYRHLALGCFKSNL-VEEGFKALELGMKLIT 370 (464)
Q Consensus 320 ~~~a~~~~~~m~~----~g~~p~-~~~~~~ll~~~~~~~~-~~~a~~~~~~~~~~~~ 370 (464)
+++|+..+++..+ .+..+. ..+|..+..++...|+ +++|...+++++.+..
T Consensus 212 y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i~~ 268 (293)
T 3u3w_A 212 YEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFFD 268 (293)
T ss_dssp HHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHH
Confidence 8888888777654 222222 5677777778888884 5888888888877654
No 120
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.77 E-value=5.2e-07 Score=74.27 Aligned_cols=126 Identities=4% Similarity=-0.105 Sum_probs=88.9
Q ss_pred HHHHHHHHHhhcChHHHHHHhhhcCCCCCchhHHHHHHHHHHhhCcHHHHHHHHHHHHHcCCCCchhhHHHHHHHhcCCC
Q 044770 65 YSYLLEFTIKNHGISQGEKLFCCIPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPG 144 (464)
Q Consensus 65 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~ 144 (464)
+..+...+...|++++|...|++... ++...|..+...+...|++++|+..|++..+.. +.+...+..+..++...|
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~~--~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~~~ 85 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQD--PHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTE 85 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSSS--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHcC--CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcc
Confidence 34455566677777777777777653 466677777777777777777777777777653 335566777777777777
Q ss_pred CcccHHHHHHHHHhCCCCCC----------------hhhHHHHHHHHHccCChhHHHHHHHHHHhC
Q 044770 145 RRKTIPNILRQMKADKVAPH----------------VSTFHILMKIEANDHNIEGLMKVYSDMKRS 194 (464)
Q Consensus 145 ~~~~a~~~~~~~~~~~~~~~----------------~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 194 (464)
++++|...|+...+.. +.+ ...+..+..++.+.|++++|...|++..+.
T Consensus 86 ~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 150 (213)
T 1hh8_A 86 KYDLAIKDLKEALIQL-RGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 150 (213)
T ss_dssp CHHHHHHHHHHHHHTT-TTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred cHHHHHHHHHHHHHhC-CCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHc
Confidence 7777777777776642 222 256777888888888888888888888765
No 121
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.77 E-value=1.3e-06 Score=76.03 Aligned_cols=126 Identities=6% Similarity=-0.115 Sum_probs=85.7
Q ss_pred HHHHhhcChhhHHHHHHHhccC----CCC--chhhHHHHHHHhhccCChHHHHHHHHHHHhc-cccCC-----hhhHHHH
Q 044770 243 ILYGYLAKGKDLERIWATVQEL----PNV--RSKSYVLAIEAFGRIAQVSRAEELWLEMQSV-KQLKA-----TEQYNSV 310 (464)
Q Consensus 243 ~~~~~~~~~~~a~~~~~~~~~~----~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~-----~~~~~~l 310 (464)
..+...|++++|...++..... ... ...+++.+...|...|++++|...|++..+. ...|+ ..+|..+
T Consensus 123 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nl 202 (293)
T 2qfc_A 123 AYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNH 202 (293)
T ss_dssp HHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHH
T ss_pred HHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhH
Confidence 3444455555555555544321 111 1235778888888889999999988887631 01111 2578888
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCC----CCc-cHHHHHHHHHHHHhcCChHHH-HHHHHHhHHH
Q 044770 311 ISVYCKNGFIDKASGLLKEMSMNG----CKP-NAITYRHLALGCFKSNLVEEG-FKALELGMKL 368 (464)
Q Consensus 311 i~~~~~~~~~~~a~~~~~~m~~~g----~~p-~~~~~~~ll~~~~~~~~~~~a-~~~~~~~~~~ 368 (464)
...|...|++++|+..+++..+.. ..+ -..+|..+...+...|++++| ...++.++.+
T Consensus 203 g~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~ 266 (293)
T 2qfc_A 203 AKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 999999999999999998876521 111 156788888899999999999 7878888654
No 122
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.72 E-value=9.2e-06 Score=70.53 Aligned_cols=133 Identities=9% Similarity=0.039 Sum_probs=102.0
Q ss_pred HHHHHHhhccCChHHHHHHHHHHHhcccc---CC--hhhHHHHHHHHHhcCChhHHHHHHHHHHh---C-CCCc--cHHH
Q 044770 273 VLAIEAFGRIAQVSRAEELWLEMQSVKQL---KA--TEQYNSVISVYCKNGFIDKASGLLKEMSM---N-GCKP--NAIT 341 (464)
Q Consensus 273 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~---~~--~~~~~~li~~~~~~~~~~~a~~~~~~m~~---~-g~~p--~~~~ 341 (464)
..+...+...|++++|...+++..+.... +. ..+|+.+...|...|++++|+..|++..+ . +-.+ ...+
T Consensus 119 ~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~ 198 (293)
T 2qfc_A 119 YYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKV 198 (293)
T ss_dssp HHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHH
Confidence 34666778899999999999998753211 11 44788999999999999999999999873 2 1112 1257
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHhHHHHhhhhhcCCCC-cHHHHHHHHHHHHhcCChhhH-HHHHHHHH
Q 044770 342 YRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTP-WLETTLSIIEIFAEKGDVGNA-ENLFEELK 408 (464)
Q Consensus 342 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A-~~~~~~m~ 408 (464)
+..+...|...|++++|...++++++.... .+... -..+|..+...|.+.|++++| ...+++..
T Consensus 199 ~~nlg~~y~~~~~y~~Al~~~~kal~~~~~---~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 199 RYNHAKALYLDSRYEESLYQVNKAIEISCR---INSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHH---TTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHhhHHHHHHHHHHHHHHHHh---cCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 888899999999999999999999876432 22222 356788999999999999999 77777665
No 123
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.71 E-value=7.7e-07 Score=73.21 Aligned_cols=123 Identities=11% Similarity=-0.013 Sum_probs=65.5
Q ss_pred HHHHHHccCChhHHHHHHHHHHhCCCCCcHhHHHHHHHHHHhcChhhHHHHHHHHHHhccCCCChhhHHHHHHHHHhhcC
Q 044770 171 LMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAK 250 (464)
Q Consensus 171 l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 250 (464)
+...+...|++++|...|++.. .|+...|..+..++.+.|++++|...+++..... +.+...+..+..++...|+
T Consensus 12 ~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~ 86 (213)
T 1hh8_A 12 EGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEK 86 (213)
T ss_dssp HHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHccc
Confidence 3444455555555555555442 3344555555555555555555555555554432 2234444445555555555
Q ss_pred hhhHHHHHHHhccCCCCc----------------hhhHHHHHHHhhccCChHHHHHHHHHHHhc
Q 044770 251 GKDLERIWATVQELPNVR----------------SKSYVLAIEAFGRIAQVSRAEELWLEMQSV 298 (464)
Q Consensus 251 ~~~a~~~~~~~~~~~~~~----------------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 298 (464)
+++|...++......+.+ ...+..+...|...|++++|...|+...+.
T Consensus 87 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 150 (213)
T 1hh8_A 87 YDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 150 (213)
T ss_dssp HHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHc
Confidence 555555555444422222 245666667777777777777777776663
No 124
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.70 E-value=4.9e-06 Score=72.68 Aligned_cols=166 Identities=11% Similarity=0.017 Sum_probs=73.7
Q ss_pred HHHHHhhhcCCCCC-chhHHHHHHHHHHhhC-cHHHHHHHHHHHHHcCCCCchhhHHHHHHHhcCC-C-CcccHHHHHHH
Q 044770 80 QGEKLFCCIPKDYQ-NELLYNNLVIACLDKG-VIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSP-G-RRKTIPNILRQ 155 (464)
Q Consensus 80 ~a~~~~~~~~~~~~-~~~~~~~li~~~~~~~-~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~-~-~~~~a~~~~~~ 155 (464)
+|+++++.+....| +..+|+.--..+...| .++++++.++.++... +-+..+|+.-...+.+. + ++++++++++.
T Consensus 72 ~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k 150 (349)
T 3q7a_A 72 RALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLDRISPQDPVSEIEYIHG 150 (349)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHCCSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhcCCChHHHHHHHHH
Confidence 34444444333322 2333444433333444 2555555555555432 22333343333333222 3 44455555555
Q ss_pred HHhCCCCCChhhHHHHHHHHHccCChh--------HHHHHHHHHHhCCCCCcHhHHHHHHHHHHhcCh-------hhHHH
Q 044770 156 MKADKVAPHVSTFHILMKIEANDHNIE--------GLMKVYSDMKRSEVEPNEVSYCILATAHAVARL-------YTVAE 220 (464)
Q Consensus 156 ~~~~~~~~~~~~~~~l~~~~~~~~~~~--------~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~-------~~~a~ 220 (464)
+.+.. +.|-..|+.-...+.+.+.++ ++++.++++.+..+. |...|+.....+.+.+. +++++
T Consensus 151 ~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~-N~SAW~~R~~lL~~l~~~~~~~~~~~eEL 228 (349)
T 3q7a_A 151 SLLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGR-NNSAWGWRWYLRVSRPGAETSSRSLQDEL 228 (349)
T ss_dssp HTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHTTSTTCCCCHHHHHHHH
T ss_pred HHHhC-CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccccchHHHHHHH
Confidence 55433 334444444333333333333 566666666554322 55555555555544443 45555
Q ss_pred HHHHHHHhccCCCChhhHHHHHHHHHhhc
Q 044770 221 TYVEALEKSMTGNNWSTLDVLIILYGYLA 249 (464)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 249 (464)
+.+++.... .+-|...|+-+-..+.+.|
T Consensus 229 e~~~~aI~~-~P~n~SaW~Ylr~Ll~~~~ 256 (349)
T 3q7a_A 229 IYILKSIHL-IPHNVSAWNYLRGFLKHFS 256 (349)
T ss_dssp HHHHHHHHH-CTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHh-CCCCHHHHHHHHHHHHhcC
Confidence 555555544 2334455544444444443
No 125
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.67 E-value=2.4e-07 Score=71.19 Aligned_cols=112 Identities=6% Similarity=-0.084 Sum_probs=86.8
Q ss_pred hhhcCCCCC-chhHHHHHHHHHHhhCcHHHHHHHHHHHHHcCCCCchhhHHHHHHHhcCCCCcccHHHHHHHHHhCCCCC
Q 044770 85 FCCIPKDYQ-NELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAP 163 (464)
Q Consensus 85 ~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 163 (464)
++++....| +...+..+...+.+.|++++|+..|++..... +.+...|..+..++...|++++|...|++..+.. +.
T Consensus 25 l~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~-P~ 102 (151)
T 3gyz_A 25 LKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG-KN 102 (151)
T ss_dssp TGGGCCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SS
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-CC
Confidence 444444434 56678888888889999999999999888864 4467788888888888888888888888888764 45
Q ss_pred ChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCcH
Q 044770 164 HVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNE 200 (464)
Q Consensus 164 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~ 200 (464)
+...|..+..+|.+.|++++|...|++..+. .|+.
T Consensus 103 ~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l--~~~~ 137 (151)
T 3gyz_A 103 DYTPVFHTGQCQLRLKAPLKAKECFELVIQH--SNDE 137 (151)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCH
T ss_pred CcHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCH
Confidence 5677888888888888888888888888775 3444
No 126
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.64 E-value=6e-07 Score=75.77 Aligned_cols=139 Identities=11% Similarity=-0.074 Sum_probs=101.2
Q ss_pred HHHHHHHhhccCChHHHHHHHHHHHhccccCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcc--HHHHHHHHHHH
Q 044770 272 YVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPN--AITYRHLALGC 349 (464)
Q Consensus 272 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~--~~~~~~ll~~~ 349 (464)
...+...+...|++++|.++|+.+...+ |+......+...+.+.+++++|+..|+...... .|. ...+..+..++
T Consensus 105 ~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~a~~~LG~al 181 (282)
T 4f3v_A 105 TMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAGAAGVAHGVAA 181 (282)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHHHHHHHHHHHH
Confidence 4556777888999999999998887643 433355556668889999999999998655421 221 23567778889
Q ss_pred HhcCChHHHHHHHHHhHHHHhhhhhcCCCCc--HHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCcHHHHHHH
Q 044770 350 FKSNLVEEGFKALELGMKLITTKKVRSSTPW--LETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTL 422 (464)
Q Consensus 350 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l 422 (464)
...|++++|+..|+++ ......|. .........++.+.|+.++|..+|+++.... |+...+..|
T Consensus 182 ~~LG~~~eAl~~l~~a-------~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~--P~~~~~~aL 247 (282)
T 4f3v_A 182 ANLALFTEAERRLTEA-------NDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTH--PEPKVAAAL 247 (282)
T ss_dssp HHTTCHHHHHHHHHHH-------HTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS--CCHHHHHHH
T ss_pred HHCCCHHHHHHHHHHH-------hcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CcHHHHHHH
Confidence 9999999999999998 33333253 3455677788889999999999999999865 653344443
No 127
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.63 E-value=6.4e-05 Score=65.68 Aligned_cols=203 Identities=8% Similarity=-0.052 Sum_probs=103.3
Q ss_pred hhHHHHHHHHHHhccCCCChhhHHHHHHHHHhh-c-ChhhHHHHHHHhccCCCCchhhHHHHHHHhhccCChH-------
Q 044770 216 YTVAETYVEALEKSMTGNNWSTLDVLIILYGYL-A-KGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVS------- 286 (464)
Q Consensus 216 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~-~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~------- 286 (464)
+++++.+++.+... .+-+..+|+.-..++... + +.+++.++++.+....+.+..+|+.-.-.+.+.|.++
T Consensus 105 l~eEL~~~~~~L~~-nPKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~ 183 (349)
T 3q7a_A 105 LEDELRLMNEFAVQ-NLKSYQVWHHRLLLLDRISPQDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQW 183 (349)
T ss_dssp HHHHHHHHHHHHHT-TCCCHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHH
T ss_pred HHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhH
Confidence 44444444444433 122333333333333333 3 4444444444444444444444444333333333333
Q ss_pred -HHHHHHHHHHhccccCChhhHHHHHHHHHhcCC-------hhHHHHHHHHHHhCCCCccHHHHHHHHHHHHhcCCh---
Q 044770 287 -RAEELWLEMQSVKQLKATEQYNSVISVYCKNGF-------IDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLV--- 355 (464)
Q Consensus 287 -~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~-------~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~--- 355 (464)
++.+.++++.+.. +-|...|+.....+.+.++ ++++++.+++++..... |...|+-+-..+.+.|+.
T Consensus 184 ~eELe~~~k~I~~d-p~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~P~-n~SaW~Ylr~Ll~~~~~~~~~ 261 (349)
T 3q7a_A 184 GSELDWCNEMLRVD-GRNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLIPH-NVSAWNYLRGFLKHFSLPLVP 261 (349)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCSGG
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCCCccc
Confidence 6777777776633 3366667666666666654 56777777777764222 455555544444444433
Q ss_pred -----------------HHHHHHHHHhHHHHhhhhhcCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCC-cHH
Q 044770 356 -----------------EEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTK-YTF 417 (464)
Q Consensus 356 -----------------~~a~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~ 417 (464)
.....+...++.... ......++......|++.|...|+.++|.++++.+.+. ..| ...
T Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~-~dpir~~ 338 (349)
T 3q7a_A 262 ILPAILPYTASKLNPDIETVEAFGFPMPSDPL--PEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSSE-YDQMRAG 338 (349)
T ss_dssp GHHHHGGGTC--------------CCCCC-CC--CSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-TCGGGHH
T ss_pred ccccccccccccccccchhHHHHHHHHHhccc--ccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh-hChHHHH
Confidence 222222222210000 00112456777889999999999999999999998753 223 233
Q ss_pred HHHHHHH
Q 044770 418 VYNTLIK 424 (464)
Q Consensus 418 ~~~~li~ 424 (464)
.|+-.++
T Consensus 339 yw~~~~~ 345 (349)
T 3q7a_A 339 YWEFRRR 345 (349)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5655444
No 128
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.62 E-value=1.8e-07 Score=80.69 Aligned_cols=98 Identities=3% Similarity=-0.103 Sum_probs=63.5
Q ss_pred chhHHHHHHHHHHhhCcHHHHHHHHHHHHHcCCCCchhhHHHHHHHhcCCCCcccHHHHHHHHHhCCCCCChhhHHHHHH
Q 044770 94 NELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMK 173 (464)
Q Consensus 94 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 173 (464)
+...+..+...+...|++++|+..|++..+.. +.+...|..+..++.+.|++++|...++...+.. +.+...+..+..
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 80 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQ 80 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 34456666666777777777777777776643 2255666666666667777777777777666543 344556666666
Q ss_pred HHHccCChhHHHHHHHHHHh
Q 044770 174 IEANDHNIEGLMKVYSDMKR 193 (464)
Q Consensus 174 ~~~~~~~~~~a~~~~~~m~~ 193 (464)
++...|++++|...|++..+
T Consensus 81 ~~~~~g~~~~A~~~~~~al~ 100 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYS 100 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHH
Confidence 77777777777777766654
No 129
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.62 E-value=1.6e-06 Score=70.61 Aligned_cols=163 Identities=11% Similarity=0.003 Sum_probs=98.3
Q ss_pred HccCChhHHHHHHHHHHhCCCCCcHhHHHHHHHHHHhcChhhHHHHHHHHHHhccCCCChhhHHHHHHHHHhhcChhhHH
Q 044770 176 ANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLE 255 (464)
Q Consensus 176 ~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 255 (464)
...|++++|.++++.+... .......+..+...+...|++++|...+++........+
T Consensus 3 ~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~--------------------- 60 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLAH-PATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSG--------------------- 60 (203)
T ss_dssp ----CHHHHHHHHHHHHTS-TTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTC---------------------
T ss_pred cccccHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcC---------------------
Confidence 4567777777755554432 123455666777777777777777777777654211100
Q ss_pred HHHHHhccCCCCchhhHHHHHHHhhccCChHHHHHHHHHHHhc----cccC--ChhhHHHHHHHHHhcCChhHHHHHHHH
Q 044770 256 RIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSV----KQLK--ATEQYNSVISVYCKNGFIDKASGLLKE 329 (464)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~--~~~~~~~li~~~~~~~~~~~a~~~~~~ 329 (464)
..+....++..+...|...|++++|...+++..+. +..+ ....+..+...+...|++++|...+++
T Consensus 61 --------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 132 (203)
T 3gw4_A 61 --------DHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEK 132 (203)
T ss_dssp --------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred --------CcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 01111223556666777777777777777765542 1011 234567777888888888888888887
Q ss_pred HHhCC---CCcc--HHHHHHHHHHHHhcCChHHHHHHHHHhHHH
Q 044770 330 MSMNG---CKPN--AITYRHLALGCFKSNLVEEGFKALELGMKL 368 (464)
Q Consensus 330 m~~~g---~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 368 (464)
..+.. -.|. ..++..+...+...|++++|...+++++++
T Consensus 133 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 176 (203)
T 3gw4_A 133 SLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARDI 176 (203)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 76421 1111 234567777788889999999998888654
No 130
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.61 E-value=1.5e-07 Score=83.55 Aligned_cols=151 Identities=8% Similarity=-0.048 Sum_probs=107.2
Q ss_pred hcChHHHHHHhhhcCCCCC-chhHHHHHHHHHHhhCcHHHHHHHHHHHHHcCCCCc--------------hhhHHHHHHH
Q 044770 75 NHGISQGEKLFCCIPKDYQ-NELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSIS--------------YLVFNRLIIL 139 (464)
Q Consensus 75 ~g~~~~a~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~--------------~~~~~~l~~~ 139 (464)
.+++++|...|+......| +...|..+...+.+.|++++|+..|++..+...... ..+|..+..+
T Consensus 126 L~~~~~A~~~~~~a~~~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~ 205 (336)
T 1p5q_A 126 LKSFEKAKESWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMC 205 (336)
T ss_dssp EEEEECCCCGGGCCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHH
T ss_pred EeecccccchhcCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666665544323 567888999999999999999999999998642211 3677777777
Q ss_pred hcCCCCcccHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCcHhHHHHHHHHHHhcChhhHH
Q 044770 140 NSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVA 219 (464)
Q Consensus 140 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a 219 (464)
+.+.|++++|...+++.++.. +.+...|..+..+|...|++++|...|++..+.. +.+...+..+..++.+.|+.++|
T Consensus 206 ~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a 283 (336)
T 1p5q_A 206 HLKLQAFSAAIESCNKALELD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY-PNNKAAKTQLAVCQQRIRRQLAR 283 (336)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888888877754 4566677777778888888888888888777653 22455667777777777777776
Q ss_pred -HHHHHHHH
Q 044770 220 -ETYVEALE 227 (464)
Q Consensus 220 -~~~~~~~~ 227 (464)
...++.|.
T Consensus 284 ~~~~~~~~~ 292 (336)
T 1p5q_A 284 EKKLYANMF 292 (336)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 34555553
No 131
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.60 E-value=4.9e-07 Score=78.02 Aligned_cols=193 Identities=9% Similarity=-0.047 Sum_probs=100.5
Q ss_pred HhHHHHHHHHHHhcChhhHHHHHHHHHHhccCCCChhhHHHHHHHHHhhcChhhHHHHHHHhccCCCCchhhHHHHHHHh
Q 044770 200 EVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSKSYVLAIEAF 279 (464)
Q Consensus 200 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 279 (464)
...+..+...+.+.|++++|...|++.... .+.+...+..+..++...|++++|...++......+.+...+..+..+|
T Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 82 (281)
T 2c2l_A 4 AQELKEQGNRLFVGRKYPEAAACYGRAITR-NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQ 82 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 344455555555666666666666655554 2224555555666666666666666666666655555556677777777
Q ss_pred hccCChHHHHHHHHHHHhccccCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCccHHHHHHHHHHHHhcCChHHHH
Q 044770 280 GRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGF 359 (464)
Q Consensus 280 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~ 359 (464)
...|++++|...|+...+.... +...+...+....+. ..+.. +..........+......+ ..+ ..|+.++|+
T Consensus 83 ~~~g~~~~A~~~~~~al~l~p~-~~~~~~~~~~~~~~~---~~~~~-~~~~~~~~~~~~~~i~~~l-~~l-~~~~~~~A~ 155 (281)
T 2c2l_A 83 LEMESYDEAIANLQRAYSLAKE-QRLNFGDDIPSALRI---AKKKR-WNSIEERRIHQESELHSYL-TRL-IAAEREREL 155 (281)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHH-TTCCCCSHHHHHHHH---HHHHH-HHHHHHTCCCCCCHHHHHH-HHH-HHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCcc-chhhHHHHHHHHHHH---HHHHH-HHHHHHHHHhhhHHHHHHH-HHH-HHHHHHHHH
Confidence 7778888888877776653211 111111122211111 11111 1122222233333333222 222 257778888
Q ss_pred HHHHHhHHHHhhhhhcCCCCcH-HHHHHHHHHHHhc-CChhhHHHHHHHHHH
Q 044770 360 KALELGMKLITTKKVRSSTPWL-ETTLSIIEIFAEK-GDVGNAENLFEELKK 409 (464)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~p~~-~~~~~li~~~~~~-g~~~~A~~~~~~m~~ 409 (464)
+.++.+ ....|+. .....+...+.+. +.+++|.++|+.+.+
T Consensus 156 ~~~~~a---------l~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~ 198 (281)
T 2c2l_A 156 EECQRN---------HEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDE 198 (281)
T ss_dssp TTTSGG---------GTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHHhh---------hccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 777776 2335543 2233333334443 567788888876654
No 132
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.59 E-value=1.7e-06 Score=67.80 Aligned_cols=95 Identities=12% Similarity=-0.093 Sum_probs=44.3
Q ss_pred HHHHHHHhhccCChHHHHHHHHHHHhccccCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCccHHHHH--HHHHHH
Q 044770 272 YVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYR--HLALGC 349 (464)
Q Consensus 272 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~--~ll~~~ 349 (464)
+..+...+...|++++|...+++..+.. +.+...|..+..++...|++++|...|++..+.... +...+. .....+
T Consensus 50 ~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~~~~~~~~ 127 (166)
T 1a17_A 50 YGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPH-DKDAKMKYQECNKI 127 (166)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHH
Confidence 4444444444555555555555544421 223444555555555555555555555555543211 222222 222224
Q ss_pred HhcCChHHHHHHHHHhHHH
Q 044770 350 FKSNLVEEGFKALELGMKL 368 (464)
Q Consensus 350 ~~~~~~~~a~~~~~~~~~~ 368 (464)
...|++++|...+......
T Consensus 128 ~~~~~~~~A~~~~~~~~~~ 146 (166)
T 1a17_A 128 VKQKAFERAIAGDEHKRSV 146 (166)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcccchHHH
Confidence 4455666666655555443
No 133
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.59 E-value=1.9e-06 Score=67.53 Aligned_cols=131 Identities=9% Similarity=0.005 Sum_probs=96.7
Q ss_pred hHHHHHHHhhccCChHHHHHHHHHHHhccccCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCccHHHHHHHHHHHH
Q 044770 271 SYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCF 350 (464)
Q Consensus 271 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~ 350 (464)
.+..+...+...|++++|...|+...+.. +.+...|..+...+...|++++|...+++..+.. +.+...+..+...+.
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~ 92 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNM 92 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHH
Confidence 36677778888899999999999888743 3467788888888999999999999999888753 235677888888888
Q ss_pred hcCChHHHHHHHHHhHHHHhhhhhcCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHHH
Q 044770 351 KSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKK 409 (464)
Q Consensus 351 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 409 (464)
..|++++|...++.+++. ....+....+..++..+.+.|++++|...++....
T Consensus 93 ~~~~~~~A~~~~~~a~~~------~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 93 ALGKFRAALRDYETVVKV------KPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HTTCHHHHHHHHHHHHHH------STTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 999999999999988532 11222222223444447778889998888876653
No 134
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.56 E-value=1.4e-06 Score=64.38 Aligned_cols=98 Identities=12% Similarity=0.055 Sum_probs=56.3
Q ss_pred hhHHHHHHHHHHhhCcHHHHHHHHHHHHHcCCCCchhhHHHHHHHhcCCCCcccHHHHHHHHHhCCCCCChhhHHHHHHH
Q 044770 95 ELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKI 174 (464)
Q Consensus 95 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 174 (464)
...|..+...+...|++++|++.|+++.+.. +.+..++..+...+...|++++|...++++.+.. +.+..++..+...
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~ 86 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHH
Confidence 3455566666666666666666666666542 2344455555555556666666666666655432 3344555555566
Q ss_pred HHccCChhHHHHHHHHHHhC
Q 044770 175 EANDHNIEGLMKVYSDMKRS 194 (464)
Q Consensus 175 ~~~~~~~~~a~~~~~~m~~~ 194 (464)
+...|++++|...|+++.+.
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~ 106 (125)
T 1na0_A 87 YYKQGDYDEAIEYYQKALEL 106 (125)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHh
Confidence 66666666666666655543
No 135
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.56 E-value=3.2e-06 Score=71.36 Aligned_cols=188 Identities=10% Similarity=-0.062 Sum_probs=138.1
Q ss_pred hhcchHHHHHHHHHHHHcCCCCCCchhHHHH-------HHHHHhhcChHHHHHHhhhcCCCCC-------c---------
Q 044770 38 KLQLNKRALEVMEWVIRERPYRPKELDYSYL-------LEFTIKNHGISQGEKLFCCIPKDYQ-------N--------- 94 (464)
Q Consensus 38 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l-------~~~~~~~g~~~~a~~~~~~~~~~~~-------~--------- 94 (464)
..++...|.+.|..+.+.. +-....|..+ ...+.+.++..++...+..-....| +
T Consensus 18 ~~~d~~~A~~~F~~a~~~d--P~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~ 95 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYD--ESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDIT 95 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCE
T ss_pred cCCCHHHHHHHHHHHHHhC--hhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCcccccc
Confidence 5789999999999999854 2344567777 5677777777777777666555322 1
Q ss_pred ------hhHHHHHHHHHHhhCcHHHHHHHHHHHHHcCCCCchhhHHHHHHHhcCCCCcccHHHHHHHHHhCCCCCC--hh
Q 044770 95 ------ELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPH--VS 166 (464)
Q Consensus 95 ------~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~ 166 (464)
...+-.+...+...|++++|.++|+.+...+ |+......+...+.+.+++++|+..|+...... .|. ..
T Consensus 96 ~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~ 172 (282)
T 4f3v_A 96 YPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAGA 172 (282)
T ss_dssp EECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHH
T ss_pred cccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHHH
Confidence 1234456778889999999999999888754 443355566668889999999999998665432 121 23
Q ss_pred hHHHHHHHHHccCChhHHHHHHHHHHhCCCCCc--HhHHHHHHHHHHhcChhhHHHHHHHHHHhcc
Q 044770 167 TFHILMKIEANDHNIEGLMKVYSDMKRSEVEPN--EVSYCILATAHAVARLYTVAETYVEALEKSM 230 (464)
Q Consensus 167 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~--~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 230 (464)
.+..+..++...|++++|+..|++.......|. .........++.+.|+.++|...|+++....
T Consensus 173 a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~ 238 (282)
T 4f3v_A 173 AGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTH 238 (282)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 567788899999999999999999875433253 3356666777889999999999999998864
No 136
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.55 E-value=2.8e-07 Score=73.46 Aligned_cols=119 Identities=9% Similarity=0.006 Sum_probs=71.4
Q ss_pred hhcChHHHHHHhhhcCCC-CCchhHHHHHHHHHHhhCcHHHHHHHHHHHHHcCCCCchhhHHHHHHH-hcCCCCc--ccH
Q 044770 74 KNHGISQGEKLFCCIPKD-YQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIIL-NSSPGRR--KTI 149 (464)
Q Consensus 74 ~~g~~~~a~~~~~~~~~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~-~~~~~~~--~~a 149 (464)
..|++++|...++..... +.+...|..+...+...|++++|+..|++..+.. +.+...+..+..+ +...|++ ++|
T Consensus 22 ~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~~~A 100 (177)
T 2e2e_A 22 SQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMTAQT 100 (177)
T ss_dssp -----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCCHHH
T ss_pred hccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcchHHH
Confidence 455566666666554443 2345666666667777777777777777666643 2345555556555 5566666 777
Q ss_pred HHHHHHHHhCCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhC
Q 044770 150 PNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRS 194 (464)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 194 (464)
...++...+.. +.+...+..+...+...|++++|...|++..+.
T Consensus 101 ~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 101 RAMIDKALALD-SNEITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhC-CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 77777766543 334556666666777777777777777776655
No 137
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.53 E-value=1.4e-06 Score=64.85 Aligned_cols=62 Identities=11% Similarity=0.004 Sum_probs=29.9
Q ss_pred hhHHHHHHHhhccCChHHHHHHHHHHHhccccCChhhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 044770 270 KSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSM 332 (464)
Q Consensus 270 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 332 (464)
..|..+..+|.+.|++++|...|++..+.. +.+...|..+..+|...|++++|++.|++.++
T Consensus 48 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~ 109 (126)
T 4gco_A 48 ILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGYIRKAACLVAMREWSKAQRAYEDALQ 109 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 334444444445555555555555444421 22344455555555555555555555555544
No 138
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.52 E-value=3.7e-07 Score=70.18 Aligned_cols=109 Identities=6% Similarity=-0.097 Sum_probs=74.2
Q ss_pred HhhhcCCCCC-chhHHHHHHHHHHhhCcHHHHHHHHHHHHHcCCCCchhhHHHHHHHhcCCCCcccHHHHHHHHHhCCCC
Q 044770 84 LFCCIPKDYQ-NELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVA 162 (464)
Q Consensus 84 ~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 162 (464)
.|+++....| +...+..+...+...|++++|+..|+...... +.+...|..+..++...|++++|...|++..... +
T Consensus 9 ~~~~al~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p 86 (148)
T 2vgx_A 9 TIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD-I 86 (148)
T ss_dssp SHHHHTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-T
T ss_pred hHHHHHcCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-C
Confidence 3444444323 45566677777777888888888887777653 3356667777777777777777777777776653 4
Q ss_pred CChhhHHHHHHHHHccCChhHHHHHHHHHHhC
Q 044770 163 PHVSTFHILMKIEANDHNIEGLMKVYSDMKRS 194 (464)
Q Consensus 163 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 194 (464)
.+...+..+..++...|++++|...|+...+.
T Consensus 87 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 87 XEPRFPFHAAECLLQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 45566667777777777777777777776653
No 139
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.52 E-value=7.3e-07 Score=70.96 Aligned_cols=120 Identities=11% Similarity=0.055 Sum_probs=62.3
Q ss_pred HccCChhHHHHHHHHHHhCCCCCcHhHHHHHHHHHHhcChhhHHHHHHHHHHhccCCCChhhHHHHHHHHHhhcChhhHH
Q 044770 176 ANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLE 255 (464)
Q Consensus 176 ~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 255 (464)
...|++++|...+++..+.. +.+...|..+..++...|++++|...|++.....
T Consensus 21 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~------------------------- 74 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR------------------------- 74 (177)
T ss_dssp C-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-------------------------
T ss_pred hhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-------------------------
Confidence 34556666666666655432 2244555556666666666666666666655442
Q ss_pred HHHHHhccCCCCchhhHHHHHHH-hhccCCh--HHHHHHHHHHHhccccCChhhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 044770 256 RIWATVQELPNVRSKSYVLAIEA-FGRIAQV--SRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSM 332 (464)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~--~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 332 (464)
+.+...+..+... +...|++ ++|...|+...+.. +.+...+..+...|...|++++|...|++..+
T Consensus 75 ----------p~~~~~~~~la~~l~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 143 (177)
T 2e2e_A 75 ----------GENAELYAALATVLYYQASQHMTAQTRAMIDKALALD-SNEITALMLLASDAFMQANYAQAIELWQKVMD 143 (177)
T ss_dssp ----------CSCHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ----------CCCHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHh
Confidence 2222234444444 4455555 66666666555532 22344555566666666666666666666665
No 140
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.52 E-value=3e-06 Score=62.56 Aligned_cols=25 Identities=20% Similarity=0.270 Sum_probs=9.9
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHH
Q 044770 307 YNSVISVYCKNGFIDKASGLLKEMS 331 (464)
Q Consensus 307 ~~~li~~~~~~~~~~~a~~~~~~m~ 331 (464)
+..+...+...|++++|...++++.
T Consensus 80 ~~~la~~~~~~~~~~~A~~~~~~~~ 104 (125)
T 1na0_A 80 WYNLGNAYYKQGDYDEAIEYYQKAL 104 (125)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 3333333334444444444443333
No 141
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.52 E-value=2.9e-07 Score=74.86 Aligned_cols=151 Identities=6% Similarity=-0.171 Sum_probs=82.7
Q ss_pred HHHHHHHhhcChHHHHHHhhhcCCC-CCchhHHHHHHHHHHhhCcHHHHHHHHHHHHHcCCCCch---------------
Q 044770 67 YLLEFTIKNHGISQGEKLFCCIPKD-YQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISY--------------- 130 (464)
Q Consensus 67 ~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~--------------- 130 (464)
..+......|+++.+.+.++.-... ......+..+...+...|++++|+..|++..+.... +.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~~~~~~~~~~ 87 (198)
T 2fbn_A 9 HHSSGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIH-TEEWDDQILLDKKKNIE 87 (198)
T ss_dssp -------------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTT-CTTCCCHHHHHHHHHHH
T ss_pred chhhhhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhc-ccccchhhHHHHHHHHH
Confidence 3444555667778887777755433 224567788888899999999999999998874311 11
Q ss_pred -hhHHHHHHHhcCCCCcccHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCcHhHHHHHHHH
Q 044770 131 -LVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATA 209 (464)
Q Consensus 131 -~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~ 209 (464)
..+..+..++...|++++|...++...+.. +.+...+..+..++...|++++|...|++..+.. +-+...+..+..+
T Consensus 88 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 165 (198)
T 2fbn_A 88 ISCNLNLATCYNKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAASLN-PNNLDIRNSYELC 165 (198)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHH
Confidence 455555556666666666666666665543 3345555556666666666666666666655432 1134444455555
Q ss_pred HHhcChhhHHH
Q 044770 210 HAVARLYTVAE 220 (464)
Q Consensus 210 ~~~~~~~~~a~ 220 (464)
+...++..++.
T Consensus 166 ~~~~~~~~~~~ 176 (198)
T 2fbn_A 166 VNKLKEARKKD 176 (198)
T ss_dssp HHHHHHHHC--
T ss_pred HHHHHHHHHHH
Confidence 55555444443
No 142
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.50 E-value=1.1e-06 Score=67.41 Aligned_cols=92 Identities=7% Similarity=-0.111 Sum_probs=49.3
Q ss_pred HHHHHHHhhcChhhHHHHHHHhccCCCCchhhHHHHHHHhhccCChHHHHHHHHHHHhccccCChhhHHHHHHHHHhcCC
Q 044770 240 VLIILYGYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGF 319 (464)
Q Consensus 240 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~ 319 (464)
.+...+...|++++|...|+.+....+.+...|..+..+|...|++++|...|++..+.. +.++..|..+..+|...|+
T Consensus 41 ~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~-P~~~~~~~~lg~~~~~lg~ 119 (151)
T 3gyz_A 41 SYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG-KNDYTPVFHTGQCQLRLKA 119 (151)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SSCCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCC
Confidence 333344444444444444444444344444445555556666666666666666665532 2245556666666666666
Q ss_pred hhHHHHHHHHHHh
Q 044770 320 IDKASGLLKEMSM 332 (464)
Q Consensus 320 ~~~a~~~~~~m~~ 332 (464)
+++|...|++..+
T Consensus 120 ~~eA~~~~~~al~ 132 (151)
T 3gyz_A 120 PLKAKECFELVIQ 132 (151)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 6666666666655
No 143
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.50 E-value=2.9e-06 Score=63.52 Aligned_cols=22 Identities=9% Similarity=0.217 Sum_probs=8.7
Q ss_pred HHHHhhccCChHHHHHHHHHHH
Q 044770 275 AIEAFGRIAQVSRAEELWLEMQ 296 (464)
Q Consensus 275 l~~~~~~~g~~~~a~~~~~~~~ 296 (464)
+...+...|++++|.+.|++..
T Consensus 90 la~~~~~~~~~~~A~~~~~~~~ 111 (133)
T 2lni_A 90 KAAALEAMKDYTKAMDVYQKAL 111 (133)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHH
Confidence 3333333444444444444333
No 144
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.50 E-value=3e-06 Score=63.12 Aligned_cols=24 Identities=8% Similarity=-0.082 Sum_probs=9.9
Q ss_pred HHHHHHhhccCChHHHHHHHHHHH
Q 044770 273 VLAIEAFGRIAQVSRAEELWLEMQ 296 (464)
Q Consensus 273 ~~l~~~~~~~g~~~~a~~~~~~~~ 296 (464)
..+...+...|++++|...|++..
T Consensus 84 ~~~~~~~~~~~~~~~A~~~~~~~~ 107 (131)
T 2vyi_A 84 GRMGLALSSLNKHVEAVAYYKKAL 107 (131)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHH
Confidence 333334444444444444444433
No 145
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.50 E-value=2.6e-06 Score=63.26 Aligned_cols=94 Identities=12% Similarity=-0.064 Sum_probs=46.3
Q ss_pred HHHHHHHHHhcChhhHHHHHHHHHHhccCCCChhhHHHHHHHHHhhcChhhHHHHHHHhccCCCCchhhHHHHHHHhhcc
Q 044770 203 YCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRI 282 (464)
Q Consensus 203 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 282 (464)
+......+.+.|++++|+..|++..+. .+.+...+..+..++...|++++|+..++...+..+.+...|..+..+|...
T Consensus 16 ~~~~G~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~ 94 (126)
T 4gco_A 16 EKNKGNEYFKKGDYPTAMRHYNEAVKR-DPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLVAM 94 (126)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHC
Confidence 333344444444444444444444433 1223344444444444444444444444444443344444555566666666
Q ss_pred CChHHHHHHHHHHHh
Q 044770 283 AQVSRAEELWLEMQS 297 (464)
Q Consensus 283 g~~~~a~~~~~~~~~ 297 (464)
|++++|.+.|++..+
T Consensus 95 ~~~~~A~~~~~~al~ 109 (126)
T 4gco_A 95 REWSKAQRAYEDALQ 109 (126)
T ss_dssp TCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH
Confidence 666666666666655
No 146
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.49 E-value=2.1e-06 Score=63.95 Aligned_cols=119 Identities=9% Similarity=-0.046 Sum_probs=67.6
Q ss_pred chhHHHHHHHHHHhhCcHHHHHHHHHHHHHcCCCCchhhHHHHHHHhcCCCCcccHHHHHHHHHhCCCCCChhhHHHHHH
Q 044770 94 NELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMK 173 (464)
Q Consensus 94 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 173 (464)
+...+..+...+...|++++|+..|++..... +.+...+..+...+...|++++|...++...+.. +.+...+..+..
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~ 88 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGL 88 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHH
Confidence 34556666666667777777777777666542 2345555556666666666666666666665542 334455555566
Q ss_pred HHHccCChhHHHHHHHHHHhCCCCCcHhHHHHHHHHHHhcCh
Q 044770 174 IEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARL 215 (464)
Q Consensus 174 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~ 215 (464)
.+...|++++|...|++..+.. +.+...+..+..++.+.|+
T Consensus 89 ~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~ 129 (131)
T 2vyi_A 89 ALSSLNKHVEAVAYYKKALELD-PDNETYKSNLKIAELKLRE 129 (131)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTT
T ss_pred HHHHhCCHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHhc
Confidence 6666666666666666655442 1234444444444444443
No 147
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.47 E-value=3.1e-06 Score=63.38 Aligned_cols=99 Identities=10% Similarity=-0.079 Sum_probs=58.1
Q ss_pred chhhHHHHHHHhcCCCCcccHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCcHhHHHHHHH
Q 044770 129 SYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILAT 208 (464)
Q Consensus 129 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~ 208 (464)
+...+..+...+...|++++|...|++..+.. +.+...+..+...+...|++++|...+++..+.. +.+...+..+..
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~ 92 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRKAA 92 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHHHH
Confidence 34555556666666666666666666665543 3345556666666666666666666666655542 223455555666
Q ss_pred HHHhcChhhHHHHHHHHHHhc
Q 044770 209 AHAVARLYTVAETYVEALEKS 229 (464)
Q Consensus 209 ~~~~~~~~~~a~~~~~~~~~~ 229 (464)
++.+.|++++|...+++..+.
T Consensus 93 ~~~~~~~~~~A~~~~~~~~~~ 113 (133)
T 2lni_A 93 ALEAMKDYTKAMDVYQKALDL 113 (133)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHh
Confidence 666666666666666665543
No 148
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.47 E-value=1.5e-06 Score=66.66 Aligned_cols=106 Identities=9% Similarity=-0.045 Sum_probs=75.6
Q ss_pred HhccCCCCchhhHHHHHHHhhccCChHHHHHHHHHHHhccccCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCccH
Q 044770 260 TVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNA 339 (464)
Q Consensus 260 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~ 339 (464)
.+....+.+...+..+...+...|++++|...|+..... .+.+...|..+..+|...|++++|+..|++...... -+.
T Consensus 12 ~al~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p-~~~ 89 (148)
T 2vgx_A 12 MLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVL-DHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDI-XEP 89 (148)
T ss_dssp HHTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCT
T ss_pred HHHcCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHc-CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCc
Confidence 333333444445666777778888888888888887763 334667777788888888888888888888877421 245
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHhHH
Q 044770 340 ITYRHLALGCFKSNLVEEGFKALELGMK 367 (464)
Q Consensus 340 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 367 (464)
..+..+..++...|++++|...|+.+++
T Consensus 90 ~~~~~lg~~~~~~g~~~~A~~~~~~al~ 117 (148)
T 2vgx_A 90 RFPFHAAECLLQXGELAEAESGLFLAQE 117 (148)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 6677777778888888888888888754
No 149
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.45 E-value=2.3e-05 Score=72.18 Aligned_cols=194 Identities=7% Similarity=-0.077 Sum_probs=101.6
Q ss_pred HHhcCCCCcccHHHHHHHHHhCCCCC-Ch---------------hhHHHHHHHHHccCChhHHHHHHHHHHhCC-CCCcH
Q 044770 138 ILNSSPGRRKTIPNILRQMKADKVAP-HV---------------STFHILMKIEANDHNIEGLMKVYSDMKRSE-VEPNE 200 (464)
Q Consensus 138 ~~~~~~~~~~~a~~~~~~~~~~~~~~-~~---------------~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~-~~p~~ 200 (464)
+.+.+.|++++|.+.|..+.+..-.. +. ..+..+...|...|++++|.+++..+...- ..++.
T Consensus 12 ~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~ 91 (434)
T 4b4t_Q 12 RRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKS 91 (434)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHH
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccch
Confidence 34556677777777777776643111 10 125566677777777777777776654321 11121
Q ss_pred hH----HHHHHHHHHhcChhhHHHHHHHHHHhc----cCCCC-hhhHHHHHHHHHhhcChhhHHHHHHHhcc------CC
Q 044770 201 VS----YCILATAHAVARLYTVAETYVEALEKS----MTGNN-WSTLDVLIILYGYLAKGKDLERIWATVQE------LP 265 (464)
Q Consensus 201 ~~----~~~li~~~~~~~~~~~a~~~~~~~~~~----~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~------~~ 265 (464)
.+ .+.+-..+...|+++.|..+++..... +..+. ..++..+...+...|++++|..+++.+.. ..
T Consensus 92 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~ 171 (434)
T 4b4t_Q 92 KTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDK 171 (434)
T ss_dssp HHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCS
T ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccc
Confidence 11 122222233456667777776665332 11111 33455566666666777776666665543 11
Q ss_pred CCchhhHHHHHHHhhccCChHHHHHHHHHHHhcc--cc-C-C--hhhHHHHHHHHHhcCChhHHHHHHHHHH
Q 044770 266 NVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVK--QL-K-A--TEQYNSVISVYCKNGFIDKASGLLKEMS 331 (464)
Q Consensus 266 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--~~-~-~--~~~~~~li~~~~~~~~~~~a~~~~~~m~ 331 (464)
+.....+..++..|...|++++|..+++...... .. | . ...+..+...+...|++++|...|.+..
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~ 243 (434)
T 4b4t_Q 172 PSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESF 243 (434)
T ss_dssp THHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 1122345566666666666666666666554311 11 1 1 1234444445555666666666655554
No 150
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.44 E-value=3.9e-06 Score=74.41 Aligned_cols=93 Identities=10% Similarity=-0.088 Sum_probs=51.3
Q ss_pred HHHHHHHhhccCChHHHHHHHHHHHhccccCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCc-cHHHHHHHHHHHH
Q 044770 272 YVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKP-NAITYRHLALGCF 350 (464)
Q Consensus 272 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~ 350 (464)
|..+..+|.+.|++++|...|++..+.. +.+...|..+..+|...|++++|+..|++..+. .| +...+..+...+.
T Consensus 199 ~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l--~P~~~~a~~~l~~~~~ 275 (336)
T 1p5q_A 199 HLNLAMCHLKLQAFSAAIESCNKALELD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQL--YPNNKAAKTQLAVCQQ 275 (336)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHH
Confidence 4555555556666666666666655532 234555666666666666666666666666553 22 3445555555555
Q ss_pred hcCChHHH-HHHHHHhHH
Q 044770 351 KSNLVEEG-FKALELGMK 367 (464)
Q Consensus 351 ~~~~~~~a-~~~~~~~~~ 367 (464)
..|+.++| ...+..|+.
T Consensus 276 ~~~~~~~a~~~~~~~~~~ 293 (336)
T 1p5q_A 276 RIRRQLAREKKLYANMFE 293 (336)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 56666555 334444443
No 151
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.42 E-value=3.5e-06 Score=65.56 Aligned_cols=136 Identities=10% Similarity=-0.022 Sum_probs=99.2
Q ss_pred hHHHHHHHhhccCChHHHHHHHHHHHhcccc-CC----hhhHHHHHHHHHhcCChhHHHHHHHHHHhC----CCCc-cHH
Q 044770 271 SYVLAIEAFGRIAQVSRAEELWLEMQSVKQL-KA----TEQYNSVISVYCKNGFIDKASGLLKEMSMN----GCKP-NAI 340 (464)
Q Consensus 271 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----g~~p-~~~ 340 (464)
++..+...+...|++++|...+++..+.... ++ ..++..+...+...|++++|...+++..+. +..+ ...
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 90 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 4667777788888888888888877653211 11 246778888899999999999999887652 1111 134
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHhHHHHhhhhhcCCCC-cHHHHHHHHHHHHhcCChhhHHHHHHHHHH
Q 044770 341 TYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTP-WLETTLSIIEIFAEKGDVGNAENLFEELKK 409 (464)
Q Consensus 341 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 409 (464)
.+..+...+...|++++|...++++++.... .+..+ ....+..+...+...|++++|.+.+++..+
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~---~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQE---LKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH---ccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 6677778889999999999999999765432 22222 245677888999999999999999988765
No 152
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.41 E-value=9.4e-06 Score=60.35 Aligned_cols=111 Identities=14% Similarity=0.051 Sum_probs=84.0
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCc-cHHHHHHHHHHHHhcCChHHHHHHHHHhHHHHhhhhhcCCCC-cHH
Q 044770 305 EQYNSVISVYCKNGFIDKASGLLKEMSMNGCKP-NAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTP-WLE 382 (464)
Q Consensus 305 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~p-~~~ 382 (464)
..+..+...+.+.|++++|+..|++.++. .| +...|..+..+|...|++++|+..++.++++.+. .....+ -..
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~--~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~--~~~~~~~~a~ 84 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIEL--DPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRE--TRADYKLIAK 84 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH--TTCCHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcc--cchhhHHHHH
Confidence 45777888889999999999999998884 34 5677888888899999999999999999765432 011111 134
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCcHHHHHH
Q 044770 383 TTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNT 421 (464)
Q Consensus 383 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ 421 (464)
+|..+...+...|++++|.+.|++..+.. ||..+...
T Consensus 85 ~~~~lg~~~~~~~~~~~A~~~~~kal~~~--~~~~~~~~ 121 (127)
T 4gcn_A 85 AMSRAGNAFQKQNDLSLAVQWFHRSLSEF--RDPELVKK 121 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhC--cCHHHHHH
Confidence 67788899999999999999999988753 55544433
No 153
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.39 E-value=1.3e-05 Score=73.85 Aligned_cols=134 Identities=10% Similarity=-0.063 Sum_probs=94.7
Q ss_pred HHHHHHhhccCChHHHHHHHHHHHhc----cccC-ChhhHHHHHHHHHhcCChhHHHHHHHHHHhC--C--CCc-cHHHH
Q 044770 273 VLAIEAFGRIAQVSRAEELWLEMQSV----KQLK-ATEQYNSVISVYCKNGFIDKASGLLKEMSMN--G--CKP-NAITY 342 (464)
Q Consensus 273 ~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~--g--~~p-~~~~~ 342 (464)
+.+...+...|+++.|..+++..... +..+ -..++..+...|...|++++|..++++.... + -.| ....+
T Consensus 99 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~ 178 (434)
T 4b4t_Q 99 TLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVH 178 (434)
T ss_dssp HHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHH
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHH
Confidence 34445556678888888888776542 2112 2346778889999999999999999887642 1 122 24578
Q ss_pred HHHHHHHHhcCChHHHHHHHHHhHHHHhhhhhcCCCCc--HHHHHHHHHHHHhcCChhhHHHHHHHHHH
Q 044770 343 RHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPW--LETTLSIIEIFAEKGDVGNAENLFEELKK 409 (464)
Q Consensus 343 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 409 (464)
..++..|...|++++|..+++.+...... ....|. ...+..+...+...|++++|...|.+..+
T Consensus 179 ~~~~~~~~~~~~~~~A~~~~~~al~~~~~---~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 179 LLESKVYHKLRNLAKSKASLTAARTAANS---IYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHH---SCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCcHHHHHHHHHHHHHHhhc---CCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 88889999999999999999998654321 222222 34567777888889999999888776653
No 154
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.39 E-value=2e-06 Score=65.54 Aligned_cols=109 Identities=7% Similarity=-0.079 Sum_probs=76.5
Q ss_pred HhhhcCCCCC-chhHHHHHHHHHHhhCcHHHHHHHHHHHHHcCCCCchhhHHHHHHHhcCCCCcccHHHHHHHHHhCCCC
Q 044770 84 LFCCIPKDYQ-NELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVA 162 (464)
Q Consensus 84 ~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 162 (464)
.|+++....| +...+..+...+...|++++|+..|+.....+ +.+...|..+..++...|++++|...|+...+.. +
T Consensus 6 ~l~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p 83 (142)
T 2xcb_A 6 TLAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMD-I 83 (142)
T ss_dssp ---CCTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-T
T ss_pred hHHHHHcCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-C
Confidence 3444444433 44566667777888888888888888887754 3456677777777888888888888888877754 4
Q ss_pred CChhhHHHHHHHHHccCChhHHHHHHHHHHhC
Q 044770 163 PHVSTFHILMKIEANDHNIEGLMKVYSDMKRS 194 (464)
Q Consensus 163 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 194 (464)
.+...+..+..++...|++++|...|+...+.
T Consensus 84 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 84 NEPRFPFHAAECHLQLGDLDGAESGFYSARAL 115 (142)
T ss_dssp TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 55566777777888888888888888777654
No 155
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.35 E-value=6.1e-06 Score=61.26 Aligned_cols=97 Identities=3% Similarity=-0.153 Sum_probs=60.0
Q ss_pred hhHHHHHHHHHHhhCcHHHHHHHHHHHHHcCCCCchhhHHHHHHHhcCCCCcccHHHHHHHHHhCCCCCChhhHHHHHHH
Q 044770 95 ELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKI 174 (464)
Q Consensus 95 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 174 (464)
...|..+...+.+.|++++|+..|++..+.. +.+...|..+..++.+.|++++|...++...+.. +.+...|..+..+
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~ 81 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATA 81 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHH
Confidence 3455566666667777777777777666643 3345566666666666666666666666666543 3345556666666
Q ss_pred HHccCChhHHHHHHHHHHh
Q 044770 175 EANDHNIEGLMKVYSDMKR 193 (464)
Q Consensus 175 ~~~~~~~~~a~~~~~~m~~ 193 (464)
+...|++++|...|++..+
T Consensus 82 ~~~~~~~~~A~~~~~~al~ 100 (126)
T 3upv_A 82 QIAVKEYASALETLDAART 100 (126)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhCHHHHHHHHHHHHH
Confidence 6666666666666666554
No 156
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.33 E-value=9.5e-07 Score=71.79 Aligned_cols=88 Identities=14% Similarity=-0.092 Sum_probs=35.0
Q ss_pred HHHHhhcChhhHHHHHHHhccCCCCchhhHHHHHHHhhccCChHHHHHHHHHHHhccccCChhhHHHHHHHHHhcCChhH
Q 044770 243 ILYGYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDK 322 (464)
Q Consensus 243 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~ 322 (464)
.++...|++++|...++......+.+...+..+..+|...|++++|...|++..+.. +.+...+..+..++...++..+
T Consensus 96 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~ 174 (198)
T 2fbn_A 96 TCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLN-PNNLDIRNSYELCVNKLKEARK 174 (198)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333233333344445555555555555555555554421 1234444455555555444444
Q ss_pred HH-HHHHHHH
Q 044770 323 AS-GLLKEMS 331 (464)
Q Consensus 323 a~-~~~~~m~ 331 (464)
+. ..+..|.
T Consensus 175 ~~~~~~~~~f 184 (198)
T 2fbn_A 175 KDKLTFGGMF 184 (198)
T ss_dssp ----------
T ss_pred HHHHHHHHHh
Confidence 44 3344443
No 157
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.33 E-value=7.3e-06 Score=60.80 Aligned_cols=62 Identities=10% Similarity=-0.020 Sum_probs=30.5
Q ss_pred hhHHHHHHHhhccCChHHHHHHHHHHHhccccCChhhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 044770 270 KSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSM 332 (464)
Q Consensus 270 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 332 (464)
..+..+..+|.+.|++++|...|++..+.. +.+...|..+..++...|++++|...|++..+
T Consensus 39 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~ 100 (126)
T 3upv_A 39 RGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAVKEYASALETLDAART 100 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHH
Confidence 334444445555555555555555554422 22344455555555555555555555555544
No 158
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.32 E-value=8.7e-06 Score=60.51 Aligned_cols=98 Identities=6% Similarity=-0.108 Sum_probs=48.1
Q ss_pred HHHHHhhcChhhHHHHHHHhccCCCCchhhHHHHHHHhhccCChHHHHHHHHHHHhcccc--CC----hhhHHHHHHHHH
Q 044770 242 IILYGYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQL--KA----TEQYNSVISVYC 315 (464)
Q Consensus 242 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~--~~----~~~~~~li~~~~ 315 (464)
...+.+.|++++|+..|+......+.+...|..+..+|...|++++|.+.|++..+.... ++ ..+|..+..++.
T Consensus 15 G~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~ 94 (127)
T 4gcn_A 15 GNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRAGNAFQ 94 (127)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHHHHHHH
Confidence 333334444444444444333333333344555555555566666666666555442211 00 124555556666
Q ss_pred hcCChhHHHHHHHHHHhCCCCccHHH
Q 044770 316 KNGFIDKASGLLKEMSMNGCKPNAIT 341 (464)
Q Consensus 316 ~~~~~~~a~~~~~~m~~~g~~p~~~~ 341 (464)
..|++++|++.|++.+. ..||+..
T Consensus 95 ~~~~~~~A~~~~~kal~--~~~~~~~ 118 (127)
T 4gcn_A 95 KQNDLSLAVQWFHRSLS--EFRDPEL 118 (127)
T ss_dssp HTTCHHHHHHHHHHHHH--HSCCHHH
T ss_pred HcCCHHHHHHHHHHHHh--hCcCHHH
Confidence 66677777777766655 2344433
No 159
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.30 E-value=0.00086 Score=58.32 Aligned_cols=195 Identities=9% Similarity=0.018 Sum_probs=92.5
Q ss_pred hHHHHHHHHHHhccCCCChhhHHHHHHHHHhhcC--hhhHHHHHHHhccCCCCchhhHHHHHHHhhccCC-hHHHHHHHH
Q 044770 217 TVAETYVEALEKSMTGNNWSTLDVLIILYGYLAK--GKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQ-VSRAEELWL 293 (464)
Q Consensus 217 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~a~~~~~ 293 (464)
++++.+++.+... .+-+..+|+.-..++...++ ++++..+++.+....+.+..+|+.-.-.+...|. ++++.+.++
T Consensus 91 ~~EL~~~~~~L~~-~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~ 169 (331)
T 3dss_A 91 KAELGFLESCLRV-NPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTD 169 (331)
T ss_dssp HHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHh-CCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHH
Confidence 3444444444332 12233333333333333332 3444444444444444444444444444444444 355555555
Q ss_pred HHHhccccCChhhHHHHHHHHHhc--------------CChhHHHHHHHHHHhCCCCc-cHHHHHHHHHHHHhc------
Q 044770 294 EMQSVKQLKATEQYNSVISVYCKN--------------GFIDKASGLLKEMSMNGCKP-NAITYRHLALGCFKS------ 352 (464)
Q Consensus 294 ~~~~~~~~~~~~~~~~li~~~~~~--------------~~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~------ 352 (464)
.+.+.. +-|...|+.....+.+. +.++++++.+...+.. .| |...|+-+-..+.+.
T Consensus 170 ~~I~~~-p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~--~P~d~SaW~Y~r~ll~~~~~~~~~ 246 (331)
T 3dss_A 170 SLITRN-FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFT--DPNDQSAWFYHRWLLGAGSGRCEL 246 (331)
T ss_dssp HHHHHC-SCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHSSSCGGGC
T ss_pred HHHHHC-CCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhccCcccc
Confidence 555532 23455555544444433 3456677777777663 33 444444333333332
Q ss_pred -----CChHHHHHHHHHhHHHHhhhhhcCCCCc-HHHHHH---HHHHHHhcCChhhHHHHHHHHHHcCCCCcHH-HHHHH
Q 044770 353 -----NLVEEGFKALELGMKLITTKKVRSSTPW-LETTLS---IIEIFAEKGDVGNAENLFEELKKANYTKYTF-VYNTL 422 (464)
Q Consensus 353 -----~~~~~a~~~~~~~~~~~~~~~~~~~~p~-~~~~~~---li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~-~~~~l 422 (464)
+.++++++.++++++. .|+ ...+-. +..+....|..+++...++++.+.+ |-.. -|.-+
T Consensus 247 ~~~~~~~l~~el~~~~elle~---------~pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~D--p~r~~~y~d~ 315 (331)
T 3dss_A 247 SVEKSTVLQSELESCKELQEL---------EPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVD--PMRAAYLDDL 315 (331)
T ss_dssp CHHHHHHHHHHHHHHHHHHHH---------CTTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHC--GGGHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHhh---------CcccchHHHHHHHHHHhhcccccHHHHHHHHHHHHHhC--cchhhHHHHH
Confidence 3466777777777432 232 122212 2222224567778888888888743 4333 45554
Q ss_pred HHHH
Q 044770 423 IKAY 426 (464)
Q Consensus 423 i~~~ 426 (464)
...+
T Consensus 316 ~~~~ 319 (331)
T 3dss_A 316 RSKF 319 (331)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4443
No 160
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.29 E-value=2.3e-05 Score=56.98 Aligned_cols=26 Identities=12% Similarity=-0.018 Sum_probs=10.5
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHH
Q 044770 306 QYNSVISVYCKNGFIDKASGLLKEMS 331 (464)
Q Consensus 306 ~~~~li~~~~~~~~~~~a~~~~~~m~ 331 (464)
.+..+..++...|++++|...+++..
T Consensus 74 ~~~~~a~~~~~~~~~~~A~~~~~~~~ 99 (118)
T 1elw_A 74 GYSRKAAALEFLNRFEEAKRTYEEGL 99 (118)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 33333334444444444444444433
No 161
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.28 E-value=2.8e-05 Score=56.45 Aligned_cols=57 Identities=19% Similarity=0.059 Sum_probs=22.9
Q ss_pred HHHHHHHccCChhHHHHHHHHHHhCCCCCcHhHHHHHHHHHHhcChhhHHHHHHHHHH
Q 044770 170 ILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALE 227 (464)
Q Consensus 170 ~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 227 (464)
.+...+...|++++|...|++..... +.+...+..+..++...|++++|...+++..
T Consensus 9 ~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~ 65 (118)
T 1elw_A 9 EKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTV 65 (118)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHH
Confidence 33344444444444444444443321 1123333334444444444444444444443
No 162
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.27 E-value=4.4e-06 Score=62.21 Aligned_cols=98 Identities=8% Similarity=0.040 Sum_probs=52.8
Q ss_pred hHHHHHHHHHHhhCcHHHHHHHHHHHHHcCCCCchhhHHHHHHHhcCCCCcccHHHHHHHHHhCCC--CCC----hhhHH
Q 044770 96 LLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKV--APH----VSTFH 169 (464)
Q Consensus 96 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~----~~~~~ 169 (464)
..|..+...+...|++++|+..|++..+.. +.+...+..+...+...|++++|...++...+... .++ ..++.
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 445555566666666666666666665542 23444555555555555555555555555544310 111 34455
Q ss_pred HHHHHHHccCChhHHHHHHHHHHhC
Q 044770 170 ILMKIEANDHNIEGLMKVYSDMKRS 194 (464)
Q Consensus 170 ~l~~~~~~~~~~~~a~~~~~~m~~~ 194 (464)
.+...+...|++++|.+.|++..+.
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~~ 108 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLAE 108 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHh
Confidence 5555566666666666666655543
No 163
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.26 E-value=0.00028 Score=61.34 Aligned_cols=132 Identities=6% Similarity=-0.030 Sum_probs=59.9
Q ss_pred hhcchH-HHHHHHHHHHHcCCCCCCc-hhHHHHHHHHHhhcC----------hHHHHHHhhhcCCC-CCchhHHHHHHHH
Q 044770 38 KLQLNK-RALEVMEWVIRERPYRPKE-LDYSYLLEFTIKNHG----------ISQGEKLFCCIPKD-YQNELLYNNLVIA 104 (464)
Q Consensus 38 ~~~~~~-~A~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~----------~~~a~~~~~~~~~~-~~~~~~~~~li~~ 104 (464)
+.|.+. +|+++++.+... .|+. .+|+.--..+...+. +++++.+++.+... +.+..+|+.-...
T Consensus 41 ~~~e~s~eaL~~t~~~L~~---nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wl 117 (331)
T 3dss_A 41 QAGELDESVLELTSQILGA---NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWL 117 (331)
T ss_dssp HTTCCSHHHHHHHHHHHTT---CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHHH---CchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 344443 566666666552 2332 233333333332222 34455555544443 2244455544444
Q ss_pred HHhhC--cHHHHHHHHHHHHHcCCCCchhhHHHHHHHhcCCCC-cccHHHHHHHHHhCCCCCChhhHHHHHHH
Q 044770 105 CLDKG--VIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGR-RKTIPNILRQMKADKVAPHVSTFHILMKI 174 (464)
Q Consensus 105 ~~~~~--~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 174 (464)
+...+ .+++++.+++.+.+.. +-|..+|+.-.-.+...|. ++++++.++.+++.. +-|...|+.....
T Consensus 118 L~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~-p~N~SAW~~R~~l 188 (331)
T 3dss_A 118 LSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCL 188 (331)
T ss_dssp HHHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-SCCHHHHHHHHHH
T ss_pred HhccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHC-CCCHHHHHHHHHH
Confidence 44444 2555555555555543 2244444444444444444 245555555555443 3444444443333
No 164
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.26 E-value=1.2e-05 Score=57.94 Aligned_cols=62 Identities=6% Similarity=0.041 Sum_probs=29.4
Q ss_pred hhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCcHhHHHHHHHHHHhcChhhHHHHHHHHHHh
Q 044770 166 STFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEK 228 (464)
Q Consensus 166 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 228 (464)
..+..+...+...|++++|...|++..+.. +.+...|..+..++...|++++|...+++..+
T Consensus 7 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~ 68 (112)
T 2kck_A 7 EEYYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVIN 68 (112)
T ss_dssp TGGGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 344444455555555555555555544432 12334444444444455555555555554443
No 165
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.26 E-value=9e-06 Score=60.48 Aligned_cols=98 Identities=9% Similarity=0.028 Sum_probs=51.7
Q ss_pred HHhhcChhhHHHHHHHhccCCCCchhhHHHHHHHhhccCChHHHHHHHHHHHhcccc--CC----hhhHHHHHHHHHhcC
Q 044770 245 YGYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQL--KA----TEQYNSVISVYCKNG 318 (464)
Q Consensus 245 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~--~~----~~~~~~li~~~~~~~ 318 (464)
+...|+++.|...++......+.+...+..+...+...|++++|...++...+.... ++ ...|..+..++...|
T Consensus 14 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~ 93 (131)
T 1elr_A 14 AYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNSYFKEE 93 (131)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHHHhc
Confidence 333333333333333333322223334555555666666666666666665543211 11 456666777777777
Q ss_pred ChhHHHHHHHHHHhCCCCccHHHHHH
Q 044770 319 FIDKASGLLKEMSMNGCKPNAITYRH 344 (464)
Q Consensus 319 ~~~~a~~~~~~m~~~g~~p~~~~~~~ 344 (464)
++++|...|++..+. .|+......
T Consensus 94 ~~~~A~~~~~~~~~~--~~~~~~~~~ 117 (131)
T 1elr_A 94 KYKDAIHFYNKSLAE--HRTPDVLKK 117 (131)
T ss_dssp CHHHHHHHHHHHHHH--CCCHHHHHH
T ss_pred cHHHHHHHHHHHHHh--CCCHHHHHH
Confidence 777777777777763 344444333
No 166
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.26 E-value=2.2e-05 Score=61.29 Aligned_cols=97 Identities=16% Similarity=0.113 Sum_probs=73.3
Q ss_pred hhhHHHHHHHhhccCChHHHHHHHHHHHhccccCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCccHHHHHHHHHH
Q 044770 269 SKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALG 348 (464)
Q Consensus 269 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~ 348 (464)
...+..+...+...|++++|...|++..+.. +.+...|..+..+|...|++++|+..|++.++... -+...|..+..+
T Consensus 11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~ 88 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVDP-KYSKAWSRLGLA 88 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CCHHHHHHHHHH
Confidence 3456677777888888888888888877743 33667788888888888888888888888877432 246677777888
Q ss_pred HHhcCChHHHHHHHHHhHH
Q 044770 349 CFKSNLVEEGFKALELGMK 367 (464)
Q Consensus 349 ~~~~~~~~~a~~~~~~~~~ 367 (464)
+...|++++|...|+.+++
T Consensus 89 ~~~~g~~~~A~~~~~~al~ 107 (164)
T 3sz7_A 89 RFDMADYKGAKEAYEKGIE 107 (164)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHccCHHHHHHHHHHHHH
Confidence 8888888888888888864
No 167
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.26 E-value=4.1e-05 Score=57.51 Aligned_cols=102 Identities=9% Similarity=-0.067 Sum_probs=79.5
Q ss_pred CchhhHHHHHHHhhccCChHHHHHHHHHHHhccccCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCccHHHHHHHH
Q 044770 267 VRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLA 346 (464)
Q Consensus 267 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll 346 (464)
.+...+..+...+...|++++|...|+...... +.+...|..+..++...|++++|...+++..+... .+...+..+.
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l~ 84 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDG-QSVKAHFFLG 84 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCc-hhHHHHHHHH
Confidence 344567777888888888888888888887743 33567888888888889999999999888887532 2567778888
Q ss_pred HHHHhcCChHHHHHHHHHhHHHHh
Q 044770 347 LGCFKSNLVEEGFKALELGMKLIT 370 (464)
Q Consensus 347 ~~~~~~~~~~~a~~~~~~~~~~~~ 370 (464)
.++...|++++|...|+.+++..+
T Consensus 85 ~~~~~~~~~~~A~~~~~~a~~~~p 108 (137)
T 3q49_B 85 QCQLEMESYDEAIANLQRAYSLAK 108 (137)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHHCh
Confidence 888888999999999998876543
No 168
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.25 E-value=1.7e-05 Score=60.28 Aligned_cols=91 Identities=12% Similarity=-0.042 Sum_probs=40.6
Q ss_pred HHHHHHhcChhhHHHHHHHHHHhccCCCChhhHHHHHHHHHhhcChhhHHHHHHHhccCCCCchhhHHHHHHHhhccCCh
Q 044770 206 LATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQV 285 (464)
Q Consensus 206 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 285 (464)
+...+.+.|++++|...|++.... .+.+...+..+..++...|++++|...++......+.+...+..+..+|...|++
T Consensus 24 ~a~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~ 102 (142)
T 2xcb_A 24 LGFNQYQAGKWDDAQKIFQALCML-DHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHLQLGDL 102 (142)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHccHHHHHHHHHHHHHh-CCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCH
Confidence 333344444444444444444433 1123333334444444444444444444444333333333444555555555555
Q ss_pred HHHHHHHHHHHh
Q 044770 286 SRAEELWLEMQS 297 (464)
Q Consensus 286 ~~a~~~~~~~~~ 297 (464)
++|...|+...+
T Consensus 103 ~~A~~~~~~al~ 114 (142)
T 2xcb_A 103 DGAESGFYSARA 114 (142)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 555555555544
No 169
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.24 E-value=9.8e-06 Score=58.34 Aligned_cols=90 Identities=8% Similarity=-0.151 Sum_probs=35.3
Q ss_pred HHHHHhhccCChHHHHHHHHHHHhccccCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCc--cHHHHHHHHHHHHh
Q 044770 274 LAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKP--NAITYRHLALGCFK 351 (464)
Q Consensus 274 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p--~~~~~~~ll~~~~~ 351 (464)
.+...+...|++++|...|++..+.. +.+...|..+...+...|++++|...+++..+.. +. +...+..+...+..
T Consensus 11 ~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l~~~~~~ 88 (112)
T 2kck_A 11 LEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAKADALRY 88 (112)
T ss_dssp GHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHHHHHHTT
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHHHHHHHH
Confidence 33333444444444444444433321 1123334444444444444444444444444321 11 23333344444444
Q ss_pred c-CChHHHHHHHHHh
Q 044770 352 S-NLVEEGFKALELG 365 (464)
Q Consensus 352 ~-~~~~~a~~~~~~~ 365 (464)
. |++++|.+.++.+
T Consensus 89 ~~~~~~~A~~~~~~~ 103 (112)
T 2kck_A 89 IEGKEVEAEIAEARA 103 (112)
T ss_dssp CSSCSHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHH
Confidence 4 4444444444443
No 170
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.24 E-value=4.1e-05 Score=58.32 Aligned_cols=96 Identities=14% Similarity=-0.023 Sum_probs=47.3
Q ss_pred hhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCc----HhHHHHHHHHHHhcChhhHHHHHHHHHHhccCCCChhhHHH
Q 044770 165 VSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPN----EVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDV 240 (464)
Q Consensus 165 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~----~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 240 (464)
...+..+...+...|++++|...|++..+. .|+ ...|..+..++...|++++|...+++..+.. +.+...+..
T Consensus 28 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~ 104 (148)
T 2dba_A 28 VEQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKALYR 104 (148)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHHHHH
Confidence 344555555555566666666666655543 233 3445555555555566666655555554431 223334444
Q ss_pred HHHHHHhhcChhhHHHHHHHhcc
Q 044770 241 LIILYGYLAKGKDLERIWATVQE 263 (464)
Q Consensus 241 l~~~~~~~~~~~~a~~~~~~~~~ 263 (464)
+..++...|++++|...++....
T Consensus 105 ~a~~~~~~~~~~~A~~~~~~al~ 127 (148)
T 2dba_A 105 RSQALEKLGRLDQAVLDLQRCVS 127 (148)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHH
Confidence 44444444444444444444333
No 171
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.20 E-value=3e-05 Score=59.14 Aligned_cols=111 Identities=10% Similarity=-0.080 Sum_probs=78.8
Q ss_pred cChhchHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCC----chhHHHHHHHHHhhcChHHHHHHhhhcCCCCC-chhHH
Q 044770 24 VHRGEIFHSINRLRKLQLNKRALEVMEWVIRERPYRPK----ELDYSYLLEFTIKNHGISQGEKLFCCIPKDYQ-NELLY 98 (464)
Q Consensus 24 ~~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~ 98 (464)
.+...+......+...|++++|++.|+...+. .|+ ...+..+...+...|++++|...+++.....| +...|
T Consensus 26 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~---~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 102 (148)
T 2dba_A 26 SSVEQLRKEGNELFKCGDYGGALAAYTQALGL---DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKAL 102 (148)
T ss_dssp CCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS---CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH---cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHH
Confidence 34556677777888888888888888888763 344 56677777788888888888888877665533 56677
Q ss_pred HHHHHHHHhhCcHHHHHHHHHHHHHcCCCCchhhHHHHHH
Q 044770 99 NNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLII 138 (464)
Q Consensus 99 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~ 138 (464)
..+..++...|++++|...|++..+.. +.+...+..+..
T Consensus 103 ~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 141 (148)
T 2dba_A 103 YRRSQALEKLGRLDQAVLDLQRCVSLE-PKNKVFQEALRN 141 (148)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHC-SSCHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHH
Confidence 777888888888888888888887753 223444444433
No 172
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.18 E-value=2.9e-05 Score=58.38 Aligned_cols=95 Identities=11% Similarity=-0.108 Sum_probs=37.3
Q ss_pred HHHHHHHHHHhcChhhHHHHHHHHHHhccCCCChhhHHHHHHHHHhhcChhhHHHHHHHhccCCCCchhhHHHHHHHhhc
Q 044770 202 SYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGR 281 (464)
Q Consensus 202 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 281 (464)
.|..+...+...|++++|...|++..... +.+...+..+..++...|+++.|...++......+.+...+..+...|..
T Consensus 11 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 89 (137)
T 3q49_B 11 ELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLE 89 (137)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHH
Confidence 33333444444444444444444433321 11223333333333333333333333333333222233334444444444
Q ss_pred cCChHHHHHHHHHHHh
Q 044770 282 IAQVSRAEELWLEMQS 297 (464)
Q Consensus 282 ~g~~~~a~~~~~~~~~ 297 (464)
.|++++|...|+...+
T Consensus 90 ~~~~~~A~~~~~~a~~ 105 (137)
T 3q49_B 90 MESYDEAIANLQRAYS 105 (137)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHH
Confidence 5555555555544443
No 173
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.17 E-value=4e-05 Score=59.87 Aligned_cols=95 Identities=13% Similarity=-0.084 Sum_probs=42.9
Q ss_pred HHHHHHHHHHhcChhhHHHHHHHHHHhccCCCChhhHHHHHHHHHhhcChhhHHHHHHHhccCCCCchhhHHHHHHHhhc
Q 044770 202 SYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGR 281 (464)
Q Consensus 202 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 281 (464)
.|..+...+.+.|++++|+..|++..+.. +.+...+..+..++...|++++|...++......+.+...|..+..+|..
T Consensus 13 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 91 (164)
T 3sz7_A 13 KLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLARFD 91 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 34444444444555555555554444431 12333334444444444444444444444333333333444455555555
Q ss_pred cCChHHHHHHHHHHHh
Q 044770 282 IAQVSRAEELWLEMQS 297 (464)
Q Consensus 282 ~g~~~~a~~~~~~~~~ 297 (464)
.|++++|...|++..+
T Consensus 92 ~g~~~~A~~~~~~al~ 107 (164)
T 3sz7_A 92 MADYKGAKEAYEKGIE 107 (164)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHH
Confidence 5555555555555544
No 174
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.16 E-value=5e-06 Score=77.14 Aligned_cols=143 Identities=6% Similarity=-0.049 Sum_probs=85.9
Q ss_pred cChHHHHHHhhhcCCCCC-chhHHHHHHHHHHhhCcHHHHHHHHHHHHHcCCCCc--------------hhhHHHHHHHh
Q 044770 76 HGISQGEKLFCCIPKDYQ-NELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSIS--------------YLVFNRLIILN 140 (464)
Q Consensus 76 g~~~~a~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~--------------~~~~~~l~~~~ 140 (464)
+++++|...|+......| ....|..+...+.+.|++++|+..|++.++...... ...|..+..++
T Consensus 248 ~~~~~A~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~ 327 (457)
T 1kt0_A 248 KSFEKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCY 327 (457)
T ss_dssp EEEECCCCGGGSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhcccCcchhhcCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666655443322 456788889999999999999999999987432111 35555566666
Q ss_pred cCCCCcccHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCcHhHHHHHHHHHHhcChhhHHH
Q 044770 141 SSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAE 220 (464)
Q Consensus 141 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~ 220 (464)
.+.|++++|...+++.++.. +.+...|..+..+|...|++++|...|++..+.. +-+...+..+..++.+.++.+++.
T Consensus 328 ~~~g~~~~A~~~~~~al~~~-p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a~ 405 (457)
T 1kt0_A 328 LKLREYTKAVECCDKALGLD-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN-PQNKAARLQISMCQKKAKEHNERD 405 (457)
T ss_dssp HHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666666666665543 3345555566666666666666666666665542 113344555555555555555443
No 175
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.15 E-value=1.9e-05 Score=73.19 Aligned_cols=134 Identities=10% Similarity=0.020 Sum_probs=103.5
Q ss_pred HHhhccCChHHHHHHHHHHHhcc---ccC----ChhhHHHHHHHHHhcCChhHHHHHHHHHHh-----CC-CCcc-HHHH
Q 044770 277 EAFGRIAQVSRAEELWLEMQSVK---QLK----ATEQYNSVISVYCKNGFIDKASGLLKEMSM-----NG-CKPN-AITY 342 (464)
Q Consensus 277 ~~~~~~g~~~~a~~~~~~~~~~~---~~~----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~-----~g-~~p~-~~~~ 342 (464)
..+...|++++|..++++..+.. ..| ...+++.|...|...|++++|..++++.++ .| --|+ ..++
T Consensus 317 ~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l 396 (490)
T 3n71_A 317 DKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAV 396 (490)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHH
Confidence 34567899999999998876521 112 345789999999999999999999988764 22 1233 4678
Q ss_pred HHHHHHHHhcCChHHHHHHHHHhHHHHhhhhhcCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHHHc
Q 044770 343 RHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKA 410 (464)
Q Consensus 343 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 410 (464)
+.|...|...|++++|..+++++++..........+....+.+.+..++...|.+++|..++.++++.
T Consensus 397 ~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~ 464 (490)
T 3n71_A 397 MRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREA 464 (490)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999999999887665444433334566778888888999999999999999863
No 176
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.14 E-value=1.3e-05 Score=59.04 Aligned_cols=96 Identities=10% Similarity=-0.047 Sum_probs=77.0
Q ss_pred hchHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCCchhHHHHHHHHHhhcChHHHHHHhhhcCCCCC-chhHHHHHHHHH
Q 044770 27 GEIFHSINRLRKLQLNKRALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQGEKLFCCIPKDYQ-NELLYNNLVIAC 105 (464)
Q Consensus 27 ~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~li~~~ 105 (464)
..+......+.+.|++++|+..|+.+.+.. +.+...|..+..++...|++++|+..|++.....| +...+..+..++
T Consensus 18 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~ 95 (121)
T 1hxi_A 18 ENPMEEGLSMLKLANLAEAALAFEAVCQKE--PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSH 95 (121)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 345667778888999999999999988743 34667788888888899999999999988776634 567888888888
Q ss_pred HhhCcHHHHHHHHHHHHHc
Q 044770 106 LDKGVIKLSLEYMKKMRVL 124 (464)
Q Consensus 106 ~~~~~~~~a~~~~~~m~~~ 124 (464)
...|++++|+..|++..+.
T Consensus 96 ~~~g~~~~A~~~~~~al~~ 114 (121)
T 1hxi_A 96 TNEHNANAALASLRAWLLS 114 (121)
T ss_dssp HHHHHHHHHHHHHHHHHC-
T ss_pred HHcCCHHHHHHHHHHHHHh
Confidence 8999999999999888764
No 177
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.12 E-value=1.3e-05 Score=74.61 Aligned_cols=118 Identities=12% Similarity=-0.078 Sum_probs=54.0
Q ss_pred HHHhcChhhHHHHHHHHHHhccCCCChhhHHHHHHHHHhhcChhhHHHHHHHhccCCCCchhhHHHHHHHhhccCChHHH
Q 044770 209 AHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRA 288 (464)
Q Consensus 209 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 288 (464)
.+.+.|++++|...+++..+. .+.+..++..+..++...|++++|...++...+..+.+...+..+..+|...|++++|
T Consensus 15 ~~~~~g~~~~A~~~~~~Al~~-~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~eA 93 (477)
T 1wao_1 15 DYFKAKDYENAIKFYSQAIEL-NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAA 93 (477)
T ss_dssp STTTTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHh-CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Confidence 344556666666666665554 2223444555555555555555555555555444444444444555555555555555
Q ss_pred HHHHHHHHhccccCChhhHHHHHHH--HHhcCChhHHHHHHH
Q 044770 289 EELWLEMQSVKQLKATEQYNSVISV--YCKNGFIDKASGLLK 328 (464)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~li~~--~~~~~~~~~a~~~~~ 328 (464)
.+.|++..+.. +.+...+..+..+ +.+.|++++|++.++
T Consensus 94 ~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 94 LRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHS-TTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 55555444421 1122233333333 444444444444444
No 178
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.12 E-value=1.8e-05 Score=58.17 Aligned_cols=86 Identities=14% Similarity=0.067 Sum_probs=33.3
Q ss_pred HHhhccCChHHHHHHHHHHHhccccCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCc-cHHHHHHHHHHHHhcCCh
Q 044770 277 EAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKP-NAITYRHLALGCFKSNLV 355 (464)
Q Consensus 277 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~~~ 355 (464)
..+.+.|++++|...|+...+. .+.+...|..+..++...|++++|+..|++..+. .| +...+..+..++...|++
T Consensus 25 ~~~~~~g~~~~A~~~~~~al~~-~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l--~P~~~~~~~~la~~~~~~g~~ 101 (121)
T 1hxi_A 25 LSMLKLANLAEAALAFEAVCQK-EPEREEAWRSLGLTQAENEKDGLAIIALNHARML--DPKDIAVHAALAVSHTNEHNA 101 (121)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCH
Confidence 3333444444444444444331 1113333344444444444444444444444332 12 223333333344444444
Q ss_pred HHHHHHHHHh
Q 044770 356 EEGFKALELG 365 (464)
Q Consensus 356 ~~a~~~~~~~ 365 (464)
++|...++.+
T Consensus 102 ~~A~~~~~~a 111 (121)
T 1hxi_A 102 NAALASLRAW 111 (121)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 4444444443
No 179
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.10 E-value=1.1e-05 Score=59.00 Aligned_cols=84 Identities=14% Similarity=0.046 Sum_probs=51.7
Q ss_pred cCChHHHHHHHHHHHhcc--ccCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCccHHHHHHHHHHHHhcCChHHHH
Q 044770 282 IAQVSRAEELWLEMQSVK--QLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGF 359 (464)
Q Consensus 282 ~g~~~~a~~~~~~~~~~~--~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~ 359 (464)
.|++++|...|++..+.+ .+.+...|..+..+|...|++++|+..|++..+.... +...+..+..++...|++++|.
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPN-HQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHcCCHHHHH
Confidence 456666777777666643 2334556666777777777777777777777664221 3556666666677777777777
Q ss_pred HHHHHhH
Q 044770 360 KALELGM 366 (464)
Q Consensus 360 ~~~~~~~ 366 (464)
..++.++
T Consensus 82 ~~~~~al 88 (117)
T 3k9i_A 82 ELLLKII 88 (117)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7777765
No 180
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.07 E-value=3.4e-05 Score=59.73 Aligned_cols=63 Identities=10% Similarity=-0.064 Sum_probs=32.1
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhC----CCCc-cHHHHHHHHHHHHhcCChHHHHHHHHHhHHH
Q 044770 306 QYNSVISVYCKNGFIDKASGLLKEMSMN----GCKP-NAITYRHLALGCFKSNLVEEGFKALELGMKL 368 (464)
Q Consensus 306 ~~~~li~~~~~~~~~~~a~~~~~~m~~~----g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 368 (464)
.+..+...+...|++++|...+++..+. +..+ ....+..+...+...|++++|...++++++.
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 158 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 158 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 3444455555555555555555544321 1111 1234455555566666666666666666554
No 181
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.04 E-value=9e-05 Score=54.91 Aligned_cols=61 Identities=11% Similarity=0.016 Sum_probs=35.3
Q ss_pred hHHHHHHHhhccCChHHHHHHHHHHHhccccCC---hhhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 044770 271 SYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKA---TEQYNSVISVYCKNGFIDKASGLLKEMSM 332 (464)
Q Consensus 271 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 332 (464)
.+..+..++...|++++|...|+...+... .+ ...+..+..++...|++++|...|+++.+
T Consensus 41 ~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 104 (129)
T 2xev_A 41 ALYWLGESYYATRNFQLAEAQFRDLVSRYP-THDKAAGGLLKLGLSQYGEGKNTEAQQTLQQVAT 104 (129)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHCC-CCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344555556666666666666666655321 12 34455566666666666666666666665
No 182
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.01 E-value=0.0003 Score=53.45 Aligned_cols=110 Identities=9% Similarity=-0.048 Sum_probs=83.2
Q ss_pred HHHHHHHhhccCChHHHHHHHHHHHhccccC------C-----hhhHHHHHHHHHhcCChhHHHHHHHHHHhC-----CC
Q 044770 272 YVLAIEAFGRIAQVSRAEELWLEMQSVKQLK------A-----TEQYNSVISVYCKNGFIDKASGLLKEMSMN-----GC 335 (464)
Q Consensus 272 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~------~-----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-----g~ 335 (464)
+......+.+.|++++|...|++..+..... + ...|+.+..++.+.|++++|+..+++.++. .+
T Consensus 14 ~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~ 93 (159)
T 2hr2_A 14 ALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGEL 93 (159)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccC
Confidence 4456666777788888888888777643220 1 238899999999999999999999998883 12
Q ss_pred Ccc-HHHH----HHHHHHHHhcCChHHHHHHHHHhHHHHhhhhhcCCCCcHHH
Q 044770 336 KPN-AITY----RHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLET 383 (464)
Q Consensus 336 ~p~-~~~~----~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~p~~~~ 383 (464)
.|+ ...| .....++...|++++|+..|++++++.+ ...++.+....
T Consensus 94 ~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p--~d~~~~~~~~~ 144 (159)
T 2hr2_A 94 NQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIE--ERKGETPGKER 144 (159)
T ss_dssp TSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH--HCCSCCTTHHH
T ss_pred CCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCC--CcHHHHHHHHH
Confidence 665 4567 8888999999999999999999988766 45666665544
No 183
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=97.98 E-value=5.7e-05 Score=70.33 Aligned_cols=123 Identities=9% Similarity=-0.006 Sum_probs=82.4
Q ss_pred HHHHhhccCChHHHHHHHHHHHhccccCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCccHHHHHHHHHHHHhcCC
Q 044770 275 AIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNL 354 (464)
Q Consensus 275 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~ 354 (464)
+...+.+.|++++|.+.|++..+. .+.+...|..+..+|.+.|++++|+..+++..+... -+...+..+..++...|+
T Consensus 12 lg~~~~~~g~~~~A~~~~~~Al~~-~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p-~~~~~~~~lg~~~~~~g~ 89 (477)
T 1wao_1 12 QANDYFKAKDYENAIKFYSQAIEL-NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDK-KYIKGYYRRAASNMALGK 89 (477)
T ss_dssp SSSSTTTTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCT-TCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHh-CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCC
Confidence 344566778888888888888774 233567788888888888888888888888887532 256677788888888888
Q ss_pred hHHHHHHHHHhHHHHhhhhhcCCCCcHHHHHHHHHHHHhcCChhhHHHHHH
Q 044770 355 VEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFE 405 (464)
Q Consensus 355 ~~~a~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 405 (464)
+++|...++++++. ....+.....-..+..+.+.|++++|.+.++
T Consensus 90 ~~eA~~~~~~al~~------~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 90 FRAALRDYETVVKV------KPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHHHH------STTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 88888888888542 1222233322223333777888888888877
No 184
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=97.98 E-value=0.00013 Score=54.02 Aligned_cols=26 Identities=19% Similarity=0.199 Sum_probs=11.1
Q ss_pred HHHHHHHHHhcChhhHHHHHHHHHHh
Q 044770 203 YCILATAHAVARLYTVAETYVEALEK 228 (464)
Q Consensus 203 ~~~li~~~~~~~~~~~a~~~~~~~~~ 228 (464)
+..+..++.+.|++++|...++++.+
T Consensus 42 ~~~lg~~~~~~~~~~~A~~~~~~~~~ 67 (129)
T 2xev_A 42 LYWLGESYYATRNFQLAEAQFRDLVS 67 (129)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 33334444444444444444444433
No 185
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=97.96 E-value=4e-05 Score=55.86 Aligned_cols=86 Identities=7% Similarity=-0.109 Sum_probs=57.1
Q ss_pred CCCcccHHHHHHHHHhCC--CCCChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCcHhHHHHHHHHHHhcChhhHHH
Q 044770 143 PGRRKTIPNILRQMKADK--VAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAE 220 (464)
Q Consensus 143 ~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~ 220 (464)
.|++++|...|++..+.+ -+.+...+..+...+...|++++|...|++..+.. +-+...+..+..++.+.|++++|.
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF-PNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHcCCHHHHH
Confidence 467777777777777643 13344566777777777888888888887777653 224566677777777788888888
Q ss_pred HHHHHHHhc
Q 044770 221 TYVEALEKS 229 (464)
Q Consensus 221 ~~~~~~~~~ 229 (464)
..+++....
T Consensus 82 ~~~~~al~~ 90 (117)
T 3k9i_A 82 ELLLKIIAE 90 (117)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 877777665
No 186
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=97.95 E-value=0.00023 Score=54.15 Aligned_cols=100 Identities=12% Similarity=-0.037 Sum_probs=81.8
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcc-------------HHHHHHHHHHHHhcCChHHHHHHHHHhHHHHhhh
Q 044770 306 QYNSVISVYCKNGFIDKASGLLKEMSMNGCKPN-------------AITYRHLALGCFKSNLVEEGFKALELGMKLITTK 372 (464)
Q Consensus 306 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-------------~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 372 (464)
.+......+.+.|++++|+..|++.++. .|+ ...|..+..++.+.|++++|+..++.++++.+
T Consensus 13 ~~~~~G~~l~~~g~~eeAi~~Y~kAL~l--~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n-- 88 (159)
T 2hr2_A 13 LALSDAQRQLVAGEYDEAAANCRRAMEI--SHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFN-- 88 (159)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHH--HTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhh--CCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhh--
Confidence 4666777888999999999999999883 343 23888899999999999999999999976533
Q ss_pred hhcCCCCc-HHHH----HHHHHHHHhcCChhhHHHHHHHHHH
Q 044770 373 KVRSSTPW-LETT----LSIIEIFAEKGDVGNAENLFEELKK 409 (464)
Q Consensus 373 ~~~~~~p~-~~~~----~~li~~~~~~g~~~~A~~~~~~m~~ 409 (464)
....+.|+ ...| .....++...|++++|+..|++..+
T Consensus 89 ~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 89 RRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp HHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 23345664 4567 8899999999999999999999875
No 187
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=97.94 E-value=8.2e-05 Score=57.88 Aligned_cols=114 Identities=15% Similarity=0.010 Sum_probs=72.6
Q ss_pred HhHHHHHHHHHHhcChhhHHHHHHHHHHhcc------CCCChhhHHHHHHHHHhhcChhhHHHHHHHhccCCCCchhhHH
Q 044770 200 EVSYCILATAHAVARLYTVAETYVEALEKSM------TGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSKSYV 273 (464)
Q Consensus 200 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 273 (464)
...+......+.+.|++++|+..|.+....- ..|+...+ ....+.....|.
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~-----------------------~~~~~~~~~~~~ 67 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEW-----------------------VELDRKNIPLYA 67 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHH-----------------------HHHHHTHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHH-----------------------HHHHHHHHHHHH
Confidence 4456667777778888888888887765530 00110000 000112233466
Q ss_pred HHHHHhhccCChHHHHHHHHHHHhccccCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCccH
Q 044770 274 LAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNA 339 (464)
Q Consensus 274 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~ 339 (464)
.+..+|.+.|++++|...++...+.. +.+...|..+..+|...|++++|...|++..+ +.|+.
T Consensus 68 nla~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~--l~p~~ 130 (162)
T 3rkv_A 68 NMSQCYLNIGDLHEAEETSSEVLKRE-ETNEKALFRRAKARIAAWKLDEAEEDLKLLLR--NHPAA 130 (162)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCGGG
T ss_pred HHHHHHHhcCcHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHh--cCCCC
Confidence 77777778888888888888777642 34566777788888888888888888888777 34554
No 188
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=97.93 E-value=0.00011 Score=67.97 Aligned_cols=143 Identities=8% Similarity=-0.062 Sum_probs=78.1
Q ss_pred HhHHHHHHHHHHhcChhhHHHHHHHHHHhccCCCChhhHHHHHHHHHhhcChhhHHHHHHHhccCCCCchhhHHHHHHHh
Q 044770 200 EVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSKSYVLAIEAF 279 (464)
Q Consensus 200 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 279 (464)
...|..+...+.+.|++++|+..|++..+......... .+...+ ........|..+..+|
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~-------------~~~~~~-------~~~~~~~~~~nla~~~ 327 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLS-------------EKESKA-------SESFLLAAFLNLAMCY 327 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCC-------------HHHHHH-------HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCC-------------hHHHHH-------HHHHHHHHHHHHHHHH
Confidence 34566666677777777777777777765422111000 000000 0000122355666666
Q ss_pred hccCChHHHHHHHHHHHhccccCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcc-HHHHHHHHHHHHhcCChHHH
Q 044770 280 GRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPN-AITYRHLALGCFKSNLVEEG 358 (464)
Q Consensus 280 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~a 358 (464)
.+.|++++|...+++..+.. +.+...|..+..+|...|++++|+..|++.++. .|+ ...+..+..++...++.+++
T Consensus 328 ~~~g~~~~A~~~~~~al~~~-p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l--~P~~~~a~~~l~~~~~~~~~~~~a 404 (457)
T 1kt0_A 328 LKLREYTKAVECCDKALGLD-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV--NPQNKAARLQISMCQKKAKEHNER 404 (457)
T ss_dssp HHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--C----CHHHHHHHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHHHHH
Confidence 67777777777777666632 235566666777777777777777777777663 343 34455555556666666555
Q ss_pred H-HHHHHh
Q 044770 359 F-KALELG 365 (464)
Q Consensus 359 ~-~~~~~~ 365 (464)
. ..+..|
T Consensus 405 ~~~~~~~~ 412 (457)
T 1kt0_A 405 DRRIYANM 412 (457)
T ss_dssp HHHHHHHC
T ss_pred HHHHHHHH
Confidence 4 344444
No 189
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=97.88 E-value=0.0001 Score=57.38 Aligned_cols=30 Identities=3% Similarity=-0.175 Sum_probs=22.4
Q ss_pred hhHHHHHHHHHHhhCcHHHHHHHHHHHHHc
Q 044770 95 ELLYNNLVIACLDKGVIKLSLEYMKKMRVL 124 (464)
Q Consensus 95 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 124 (464)
...+......+.+.|++++|+..|.+.+..
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~ 40 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTR 40 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 455667777788888888888888777663
No 190
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.87 E-value=0.00014 Score=65.19 Aligned_cols=138 Identities=9% Similarity=-0.041 Sum_probs=71.1
Q ss_pred hHHHHHHHHHHhhCcHHHHHHHHHHHHHcCCCCchhhHHHHHHHhcCCCCcccHHHHHHHHHhCCCCCChhhHHHHHHHH
Q 044770 96 LLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIE 175 (464)
Q Consensus 96 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 175 (464)
..|..+...+.+.|++++|+..|++.++.- +... ...-.+...+.. +.+..+|..+..+|
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~--~~~~-----------------~~~~~~~~~~~~-~~~~~~~~nla~~~ 283 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYV--EGSR-----------------AAAEDADGAKLQ-PVALSCVLNIGACK 283 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--HHHH-----------------HHSCHHHHGGGH-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHh--hcCc-----------------cccChHHHHHHH-HHHHHHHHHHHHHH
Confidence 457778888899999999999998887621 0000 000001110000 12234455555555
Q ss_pred HccCChhHHHHHHHHHHhCCCCCcHhHHHHHHHHHHhcChhhHHHHHHHHHHhccCCCChhhHHHHHHHHHhhcChhhHH
Q 044770 176 ANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLE 255 (464)
Q Consensus 176 ~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 255 (464)
.+.|++++|+..+++..+.. +.+...|..+..+|...|++++|...|++..+.. +.+...+..+..++...++.+++.
T Consensus 284 ~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~-P~~~~~~~~l~~~~~~~~~~~~a~ 361 (370)
T 1ihg_A 284 LKMSDWQGAVDSCLEALEID-PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDKAIQAELLKVKQKIKAQKDKE 361 (370)
T ss_dssp HHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccCHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555555555432 1234455555555555566666655555555432 223444444445555554444443
No 191
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.82 E-value=0.00015 Score=64.89 Aligned_cols=137 Identities=13% Similarity=-0.027 Sum_probs=78.5
Q ss_pred HHHHHHHHHHhcChhhHHHHHHHHHHhccCCCChhhHHHHHHHHHhhcChhhHHHHHHHhccCCCCchhhHHHHHHHhhc
Q 044770 202 SYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGR 281 (464)
Q Consensus 202 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 281 (464)
.+..+...+.+.|++++|+..|++..+.-.. . ..... .+......+.....|..+..+|.+
T Consensus 225 ~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~--~----------~~~~~-------~~~~~~~~~~~~~~~~nla~~~~~ 285 (370)
T 1ihg_A 225 DLKNIGNTFFKSQNWEMAIKKYTKVLRYVEG--S----------RAAAE-------DADGAKLQPVALSCVLNIGACKLK 285 (370)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH--H----------HHHSC-------HHHHGGGHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHhhc--C----------ccccC-------hHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4556666777788888888877776552100 0 00000 001111112223346666677777
Q ss_pred cCChHHHHHHHHHHHhccccCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCc-cHHHHHHHHHHHHhcCChHHHHH
Q 044770 282 IAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKP-NAITYRHLALGCFKSNLVEEGFK 360 (464)
Q Consensus 282 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~~~~~a~~ 360 (464)
.|++++|...+++..+.. +.+...|..+..+|...|++++|+..|++..+. .| +...+..+...+...++.+++.+
T Consensus 286 ~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l--~P~~~~~~~~l~~~~~~~~~~~~a~k 362 (370)
T 1ihg_A 286 MSDWQGAVDSCLEALEID-PSNTKALYRRAQGWQGLKEYDQALADLKKAQEI--APEDKAIQAELLKVKQKIKAQKDKEK 362 (370)
T ss_dssp TTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777777777777632 235566777777777777777777777777663 33 44455555555555566555543
No 192
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.82 E-value=8e-05 Score=65.95 Aligned_cols=146 Identities=10% Similarity=-0.020 Sum_probs=65.9
Q ss_pred hHHHHHHHHHccCChhHHHHHHHHHHhCCCCCcHhHHHHHHHHHHhcChhhHHHHHHHHHHhccCCCChhhHHHHHHHHH
Q 044770 167 TFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYG 246 (464)
Q Consensus 167 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 246 (464)
.+..+...+.+.|++++|...|++.... .|+... +...++..++...+. ...+..+..++.
T Consensus 181 ~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~-------~~~~~~~~~~~~~l~----------~~~~~nla~~~~ 241 (338)
T 2if4_A 181 RRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFM-------FQLYGKYQDMALAVK----------NPCHLNIAACLI 241 (338)
T ss_dssp HHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHH-------HTCCHHHHHHHHHHH----------THHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchh-------hhhcccHHHHHHHHH----------HHHHHHHHHHHH
Confidence 3555666666777777777777776543 333221 112222332222111 124556666666
Q ss_pred hhcChhhHHHHHHHhccCCCCchhhHHHHHHHhhccCChHHHHHHHHHHHhccccCChhhHHHHHHH-HHhcCChhHHHH
Q 044770 247 YLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISV-YCKNGFIDKASG 325 (464)
Q Consensus 247 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~-~~~~~~~~~a~~ 325 (464)
+.|++++|...++......+.+...+..+..+|...|++++|...|++..+.. +-+...+..+... ....+..+.+..
T Consensus 242 ~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~-p~~~~a~~~L~~l~~~~~~~~~~a~~ 320 (338)
T 2if4_A 242 KLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYA-PDDKAIRRELRALAEQEKALYQKQKE 320 (338)
T ss_dssp TTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-----------------------------
T ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67777777777666666555556667777777777777777777777766532 1233344444443 233455666777
Q ss_pred HHHHHHh
Q 044770 326 LLKEMSM 332 (464)
Q Consensus 326 ~~~~m~~ 332 (464)
+|..|..
T Consensus 321 ~~~~~l~ 327 (338)
T 2if4_A 321 MYKGIFK 327 (338)
T ss_dssp -------
T ss_pred HHHHhhC
Confidence 7777765
No 193
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.79 E-value=2.7e-05 Score=68.98 Aligned_cols=130 Identities=6% Similarity=-0.049 Sum_probs=64.6
Q ss_pred hhHHHHHHHHHHhhCcHHHHHHHHHHHHHcCCCCch------------------hhHHHHHHHhcCCCCcccHHHHHHHH
Q 044770 95 ELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISY------------------LVFNRLIILNSSPGRRKTIPNILRQM 156 (464)
Q Consensus 95 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~------------------~~~~~l~~~~~~~~~~~~a~~~~~~~ 156 (464)
...+..+...+.+.|++++|+..|++.... .|+. ..|..+..++.+.|++++|...++..
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~a 256 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIV 256 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 344555555555555666666655555543 1222 26777777788888888888888887
Q ss_pred HhCCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCc-HhHHHHHHHH-HHhcChhhHHHHHHHHHHhc
Q 044770 157 KADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPN-EVSYCILATA-HAVARLYTVAETYVEALEKS 229 (464)
Q Consensus 157 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~li~~-~~~~~~~~~a~~~~~~~~~~ 229 (464)
++.. +.+...|..+..+|...|++++|...|++..+. .|+ ...+..+... ....+..+.+...|..+...
T Consensus 257 l~~~-p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l--~p~~~~a~~~L~~l~~~~~~~~~~a~~~~~~~l~~ 328 (338)
T 2if4_A 257 LTEE-EKNPKALFRRGKAKAELGQMDSARDDFRKAQKY--APDDKAIRRELRALAEQEKALYQKQKEMYKGIFKG 328 (338)
T ss_dssp HHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------------------------
T ss_pred HHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC
Confidence 7654 445667777888888888888888888887654 333 3344444443 23345566777777777654
No 194
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.79 E-value=0.00019 Score=66.50 Aligned_cols=132 Identities=5% Similarity=-0.113 Sum_probs=96.0
Q ss_pred HHHHhcCChhHHHHHHHHHHhC---CCCc----cHHHHHHHHHHHHhcCChHHHHHHHHHhHHHHhhhhhcCCCCcHHHH
Q 044770 312 SVYCKNGFIDKASGLLKEMSMN---GCKP----NAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETT 384 (464)
Q Consensus 312 ~~~~~~~~~~~a~~~~~~m~~~---g~~p----~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~p~~~~~ 384 (464)
..+...|++++|..++++.++. -+-| ...+++.+..+|...|++++|..+++++++..........+-...++
T Consensus 317 ~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l 396 (490)
T 3n71_A 317 DKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAV 396 (490)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHH
Confidence 3456789999999999887652 1222 24678999999999999999999999998876543333333345679
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHHH---cCCCCcHH----HHHHHHHHHHHcCC--ChhHHHHHHHhC
Q 044770 385 LSIIEIFAEKGDVGNAENLFEELKK---ANYTKYTF----VYNTLIKAYVKAKI--NDPNLLRRMILG 443 (464)
Q Consensus 385 ~~li~~~~~~g~~~~A~~~~~~m~~---~~~~p~~~----~~~~li~~~~~~g~--~a~~~~~~m~~~ 443 (464)
+.|...|...|++++|..++++..+ .-+.|+.. +.+.+-.++...|. .|..++.++++.
T Consensus 397 ~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~ 464 (490)
T 3n71_A 397 MRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREA 464 (490)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999998763 11224433 44555566655554 488888888763
No 195
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.75 E-value=0.0011 Score=62.98 Aligned_cols=139 Identities=10% Similarity=-0.002 Sum_probs=90.4
Q ss_pred HHHHHHHHHHHHHcCCCCchhhHHHHHHHhcCCC--CcccHHHHHHHHHhCCCCCChhhHHHHHHHHHccC-ChhHHHHH
Q 044770 111 IKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPG--RRKTIPNILRQMKADKVAPHVSTFHILMKIEANDH-NIEGLMKV 187 (464)
Q Consensus 111 ~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~ 187 (464)
++++++.++.+.+.. +-+..+|+.-..++.+.+ +++++.+.++.+.+.. +.+..+|+.-...+.+.| .++++++.
T Consensus 89 ~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d-~~N~~aW~~R~~~l~~l~~~~~~el~~ 166 (567)
T 1dce_A 89 VKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAF 166 (567)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccccHHHHHHHHHHHHhhc-cccccHHHHHHHHHHHcCCChHHHHHH
Confidence 677777777777654 335566666666666666 4577777777777654 556666766666666666 67777777
Q ss_pred HHHHHhCCCCCcHhHHHHHHHHHHhc--------------ChhhHHHHHHHHHHhccCCCChhhHHHHHHHHHhhcChhh
Q 044770 188 YSDMKRSEVEPNEVSYCILATAHAVA--------------RLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKD 253 (464)
Q Consensus 188 ~~~m~~~~~~p~~~~~~~li~~~~~~--------------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 253 (464)
++++.+..+. |...|+.....+.+. +.++++++.+++.... .+-+...|.-....+...++.++
T Consensus 167 ~~~~I~~~p~-n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~-~P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 167 TDSLITRNFS-NYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFT-DPNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp HHTTTTTTCC-CHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHH-CSSCSHHHHHHHHHHSCCCCCSC
T ss_pred HHHHHHHCCC-CccHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhh-CCCCccHHHHHHHHHhcCCCccc
Confidence 7777765432 566666666555542 5567888888877765 33466777777666766665433
No 196
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.67 E-value=0.0013 Score=49.26 Aligned_cols=113 Identities=14% Similarity=0.082 Sum_probs=86.2
Q ss_pred hCcHHHHHHHHHHHHHcCCCCchhhHHHHHHHhcCCCCcccHHHHHHHHHhCCCCCChhhHHHHHHHHHc----cCChhH
Q 044770 108 KGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEAN----DHNIEG 183 (464)
Q Consensus 108 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~ 183 (464)
.+++++|++.|++..+.| .|+ .. |...|...+.+++|.+.|+...+.| +...+..|...|.. .+++++
T Consensus 8 ~~d~~~A~~~~~~aa~~g-~~~--a~--lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~ 79 (138)
T 1klx_A 8 KKDLKKAIQYYVKACELN-EMF--GC--LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRK 79 (138)
T ss_dssp HHHHHHHHHHHHHHHHTT-CTT--HH--HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHH
T ss_pred ccCHHHHHHHHHHHHcCC-CHh--hh--HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHH
Confidence 457888899998888877 223 23 6677777777888888888888764 56667777777777 788899
Q ss_pred HHHHHHHHHhCCCCCcHhHHHHHHHHHHh----cChhhHHHHHHHHHHhccC
Q 044770 184 LMKVYSDMKRSEVEPNEVSYCILATAHAV----ARLYTVAETYVEALEKSMT 231 (464)
Q Consensus 184 a~~~~~~m~~~~~~p~~~~~~~li~~~~~----~~~~~~a~~~~~~~~~~~~ 231 (464)
|...|++..+.| +...+..+...|.. .++.++|..+|++..+.|.
T Consensus 80 A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 80 AAQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp HHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence 999998888764 55667777777777 7888888888888877653
No 197
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.66 E-value=0.0022 Score=60.85 Aligned_cols=139 Identities=6% Similarity=-0.102 Sum_probs=66.3
Q ss_pred hhHHHHHHHHHHhCCCCCcHhHHHHHHHHHHhcC--hhhHHHHHHHHHHhccCCCChhhHHHHHHHHHhhc-ChhhHHHH
Q 044770 181 IEGLMKVYSDMKRSEVEPNEVSYCILATAHAVAR--LYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLA-KGKDLERI 257 (464)
Q Consensus 181 ~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~ 257 (464)
++++++.++.+.+.. +-+..+|+.-..++.+.+ +++++++.++++.+.. +.+..+|+.-..++...| .++++.+.
T Consensus 89 ~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d-~~N~~aW~~R~~~l~~l~~~~~~el~~ 166 (567)
T 1dce_A 89 VKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAF 166 (567)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccccHHHHHHHHHHHHhhc-cccccHHHHHHHHHHHcCCChHHHHHH
Confidence 444444444444332 113334444333444444 3344444444444431 223334443333344444 34444444
Q ss_pred HHHhccCCCCchhhHHHHHHHhhc--------------cCChHHHHHHHHHHHhccccCChhhHHHHHHHHHhcCChhH
Q 044770 258 WATVQELPNVRSKSYVLAIEAFGR--------------IAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDK 322 (464)
Q Consensus 258 ~~~~~~~~~~~~~~~~~l~~~~~~--------------~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~ 322 (464)
++.+.+..+.+...|+.....+.+ .+.++++.+.+...... .+-|...|+-.-..+.+.++.++
T Consensus 167 ~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~-~P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 167 TDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFT-DPNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp HHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHH-CSSCSHHHHHHHHHHSCCCCCSC
T ss_pred HHHHHHHCCCCccHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhh-CCCCccHHHHHHHHHhcCCCccc
Confidence 444444444444444443333322 24567788888777763 33467778777777766666433
No 198
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.61 E-value=0.00065 Score=49.06 Aligned_cols=81 Identities=14% Similarity=0.011 Sum_probs=55.1
Q ss_pred ccHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCcHhHHHHHHHHHHhcChhhHHHHHHHHH
Q 044770 147 KTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEAL 226 (464)
Q Consensus 147 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~ 226 (464)
+.|...|++..+.. +.+...+..+...+...|++++|...|++..+.. +.+...|..+..++...|++++|...|++.
T Consensus 2 ~~a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 79 (115)
T 2kat_A 2 QAITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWESG 79 (115)
T ss_dssp CCHHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 35666677766643 4456667777777777777777777777776653 224556677777777777777777777776
Q ss_pred Hhc
Q 044770 227 EKS 229 (464)
Q Consensus 227 ~~~ 229 (464)
...
T Consensus 80 l~~ 82 (115)
T 2kat_A 80 LAA 82 (115)
T ss_dssp HHH
T ss_pred HHh
Confidence 553
No 199
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.61 E-value=8.8e-05 Score=53.21 Aligned_cols=91 Identities=10% Similarity=-0.028 Sum_probs=65.7
Q ss_pred hhHHHHHHHhhccCChHHHHHHHHHHHhccccCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcc-------HHHH
Q 044770 270 KSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPN-------AITY 342 (464)
Q Consensus 270 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-------~~~~ 342 (464)
..+..+...+...|++++|...|++..+. .+.+...|..+..++...|++++|+..+++..+. .|+ ...+
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~-~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~ 81 (111)
T 2l6j_A 5 EKQKEQGNSLFKQGLYREAVHCYDQLITA-QPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRY--TSTAEHVAIRSKLQ 81 (111)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--CSSTTSHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCccHHHHHHHHH
Confidence 34667778888889999999999888874 3346778888888899999999999999988874 454 4445
Q ss_pred HHHHHHHHhcCChHHHHHHHH
Q 044770 343 RHLALGCFKSNLVEEGFKALE 363 (464)
Q Consensus 343 ~~ll~~~~~~~~~~~a~~~~~ 363 (464)
..+..++...|+.+.|...++
T Consensus 82 ~~~~~~~~~~~~~~~a~~~~~ 102 (111)
T 2l6j_A 82 YRLELAQGAVGSVQIPVVEVD 102 (111)
T ss_dssp HHHHHHHHHHHCCCCCSSSSS
T ss_pred HHHHHHHHHHHhHhhhHhHHH
Confidence 555555666666655544433
No 200
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.55 E-value=0.00031 Score=53.31 Aligned_cols=114 Identities=5% Similarity=-0.047 Sum_probs=84.2
Q ss_pred HHhhcchHHHHHHHHHHHHcCCCCCCchhHHHHHHHHHhhcCh----------HHHHHHhhhcCCCCC-chhHHHHHHHH
Q 044770 36 LRKLQLNKRALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGI----------SQGEKLFCCIPKDYQ-NELLYNNLVIA 104 (464)
Q Consensus 36 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~----------~~a~~~~~~~~~~~~-~~~~~~~li~~ 104 (464)
..+.+.+++|++.++...+.. +.+...|..+..++...+++ ++|+..|++.....| +..+|..+..+
T Consensus 12 ~~r~~~feeA~~~~~~Ai~l~--P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~a 89 (158)
T 1zu2_A 12 FDRILLFEQIRQDAENTYKSN--PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNA 89 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHH
Confidence 346678899999999998854 44777888888888888775 488888888877644 56788889988
Q ss_pred HHhhC-----------cHHHHHHHHHHHHHcCCCCchhhHHHHHHHhcCCCCcccHHHHHHHHHhC
Q 044770 105 CLDKG-----------VIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKAD 159 (464)
Q Consensus 105 ~~~~~-----------~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 159 (464)
|...| ++++|++.|++.++. .|+...|...+... ++|.+++-.+...
T Consensus 90 y~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l--~P~~~~y~~al~~~------~ka~el~~~~~~~ 147 (158)
T 1zu2_A 90 YTSFAFLTPDETEAKHNFDLATQFFQQAVDE--QPDNTHYLKSLEMT------AKAPQLHAEAYKQ 147 (158)
T ss_dssp HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHH------HTHHHHHHHHHHS
T ss_pred HHHhcccCcchhhhhccHHHHHHHHHHHHHh--CCCCHHHHHHHHHH------HhCHhccCccccc
Confidence 88764 789999999888884 57766666665543 3455555444443
No 201
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.48 E-value=0.00088 Score=48.32 Aligned_cols=62 Identities=6% Similarity=-0.149 Sum_probs=26.6
Q ss_pred hhhHHHHHHHhhccCChHHHHHHHHHHHhccccCChhhHHHHHHHHHhcCChhHHHHHHHHHH
Q 044770 269 SKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMS 331 (464)
Q Consensus 269 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 331 (464)
...+..+...|...|++++|...|++..+.. +.+...|..+..+|...|++++|...|++..
T Consensus 19 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 19 MLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3334444444444444444444444444321 1223344444444444444444444444443
No 202
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.46 E-value=0.0047 Score=46.26 Aligned_cols=85 Identities=7% Similarity=-0.044 Sum_probs=52.5
Q ss_pred HHHHhhccCChHHHHHHHHHHHhccccCChhhHHHHHHHHHh----cCChhHHHHHHHHHHhCCCCccHHHHHHHHHHHH
Q 044770 275 AIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCK----NGFIDKASGLLKEMSMNGCKPNAITYRHLALGCF 350 (464)
Q Consensus 275 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~ 350 (464)
+...|...+.+++|.+.|++..+.+ ++..+..+...|.. .+++++|..+|++..+.| +...+..+...|.
T Consensus 31 lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~ 104 (138)
T 1klx_A 31 LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLN---DQDGCLILGYKQY 104 (138)
T ss_dssp HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcCC---CHHHHHHHHHHHH
Confidence 4455555555666666666666643 44456666666665 566777777777766654 3445555555555
Q ss_pred h----cCChHHHHHHHHHh
Q 044770 351 K----SNLVEEGFKALELG 365 (464)
Q Consensus 351 ~----~~~~~~a~~~~~~~ 365 (464)
. .++.++|..+|+.+
T Consensus 105 ~G~g~~~d~~~A~~~~~~A 123 (138)
T 1klx_A 105 AGKGVVKNEKQAVKTFEKA 123 (138)
T ss_dssp HTSSSCCCHHHHHHHHHHH
T ss_pred CCCCCCcCHHHHHHHHHHH
Confidence 5 56777777777766
No 203
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.41 E-value=0.00059 Score=48.70 Aligned_cols=64 Identities=14% Similarity=0.012 Sum_probs=39.1
Q ss_pred hhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCcHhHHHHHHHHHHhcChhhHHHHHHHHHHhc
Q 044770 165 VSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKS 229 (464)
Q Consensus 165 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 229 (464)
...+..+...+...|++++|...|++..+.. +.+...|..+..++.+.|++++|+..+++....
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 67 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRY 67 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 4455556666666666666666666665542 224555666666666666666666666666553
No 204
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.39 E-value=0.00041 Score=52.61 Aligned_cols=109 Identities=14% Similarity=0.012 Sum_probs=64.8
Q ss_pred HhcChhhHHHHHHHHHHhccCCCChhhHHHHHHHHHhhcChhhHHHHHHHhccCCCCchhhHHHHHHHhhccCChHHHHH
Q 044770 211 AVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEE 290 (464)
Q Consensus 211 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 290 (464)
.+.+.+++|...++...+.. +.+...+..+..++...++++.+...+ +.+++|+.
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~-P~~aea~~n~G~~l~~l~~~~~g~~al------------------------~~~~eAi~ 67 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAK------------------------QMIQEAIT 67 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHH------------------------HHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhcccchhhhhH------------------------hHHHHHHH
Confidence 34555666666666665542 334555555555555555444222211 12457777
Q ss_pred HHHHHHhccccCChhhHHHHHHHHHhc-----------CChhHHHHHHHHHHhCCCCccHHHHHHHHH
Q 044770 291 LWLEMQSVKQLKATEQYNSVISVYCKN-----------GFIDKASGLLKEMSMNGCKPNAITYRHLAL 347 (464)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~li~~~~~~-----------~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~ 347 (464)
.|++..+.. +.+...|..+..+|... |++++|+..|++.++ +.|+...|...+.
T Consensus 68 ~le~AL~ld-P~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~--l~P~~~~y~~al~ 132 (158)
T 1zu2_A 68 KFEEALLID-PKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVD--EQPDNTHYLKSLE 132 (158)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHH
T ss_pred HHHHHHHhC-cCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHH--hCCCCHHHHHHHH
Confidence 777777633 22455677777777765 478888888888887 5677665554444
No 205
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.36 E-value=0.00083 Score=61.15 Aligned_cols=93 Identities=6% Similarity=-0.099 Sum_probs=72.6
Q ss_pred hcCChhHHHHHHHHHHhC---CCCcc----HHHHHHHHHHHHhcCChHHHHHHHHHhHHHHhhhhhcCCCC-cHHHHHHH
Q 044770 316 KNGFIDKASGLLKEMSMN---GCKPN----AITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTP-WLETTLSI 387 (464)
Q Consensus 316 ~~~~~~~a~~~~~~m~~~---g~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~p-~~~~~~~l 387 (464)
..|++++|..++++.++. -+-|+ ..+++.+..+|...|++++|..+++++++........ ..| ...+++.|
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~-~Hp~~a~~l~nL 388 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPV-YSLNVASMWLKL 388 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCS-SCHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCC-CChHHHHHHHHH
Confidence 357889999998887652 12232 3678899999999999999999999998876542222 344 45669999
Q ss_pred HHHHHhcCChhhHHHHHHHHHH
Q 044770 388 IEIFAEKGDVGNAENLFEELKK 409 (464)
Q Consensus 388 i~~~~~~g~~~~A~~~~~~m~~ 409 (464)
...|...|++++|..++++..+
T Consensus 389 a~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 389 GRLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhccCHHHHHHHHHHHHH
Confidence 9999999999999999998764
No 206
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.31 E-value=0.0013 Score=60.04 Aligned_cols=99 Identities=10% Similarity=-0.034 Sum_probs=77.7
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCC---CCcc----HHHHHHHHHHHHhcCChHHHHHHHHHhHHHHhhhhhcCCCC-cH
Q 044770 310 VISVYCKNGFIDKASGLLKEMSMNG---CKPN----AITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTP-WL 381 (464)
Q Consensus 310 li~~~~~~~~~~~a~~~~~~m~~~g---~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~p-~~ 381 (464)
.+..+.+.|++++|..++++..+.. +.|+ ..+++.+..+|...|++++|..+++++++....... ...| ..
T Consensus 293 ~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg-~~Hp~~a 371 (429)
T 3qwp_A 293 KIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFP-GSHPVRG 371 (429)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSC-SSCHHHH
T ss_pred HHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcC-CCChHHH
Confidence 3555667899999999999887632 2232 367889999999999999999999999887654222 3334 45
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHHHH
Q 044770 382 ETTLSIIEIFAEKGDVGNAENLFEELKK 409 (464)
Q Consensus 382 ~~~~~li~~~~~~g~~~~A~~~~~~m~~ 409 (464)
.+++.|...|...|++++|..++++..+
T Consensus 372 ~~l~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 372 VQVMKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 6699999999999999999999998764
No 207
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.29 E-value=0.0019 Score=43.93 Aligned_cols=63 Identities=13% Similarity=0.076 Sum_probs=31.9
Q ss_pred hhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCcHhHHHHHHHHHHhcChhhHHHHHHHHHHhc
Q 044770 166 STFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKS 229 (464)
Q Consensus 166 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 229 (464)
..+..+...+...|++++|...|++..+.. +.+...+..+..++.+.|++++|...+++....
T Consensus 10 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 72 (91)
T 1na3_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 72 (91)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 344445555555555555555555554432 123444455555555555555555555555443
No 208
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.28 E-value=0.011 Score=51.78 Aligned_cols=72 Identities=7% Similarity=-0.014 Sum_probs=37.0
Q ss_pred CchhhHHHHHHHhcCCCCcccHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCcHhHH
Q 044770 128 ISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSY 203 (464)
Q Consensus 128 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~ 203 (464)
.+..+|..+...+...|++++|...++++...+ |+...|..+...+.-.|++++|.+.|++.... .|...||
T Consensus 275 ~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL--~P~~~t~ 346 (372)
T 3ly7_A 275 NLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNL--RPGANTL 346 (372)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCSHHHH
T ss_pred cCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCcChH
Confidence 344445444444444455555555555555543 44444545555555556666666655555443 3444443
No 209
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.28 E-value=0.0018 Score=44.12 Aligned_cols=60 Identities=15% Similarity=0.159 Sum_probs=30.0
Q ss_pred HHHHHHHhhccCChHHHHHHHHHHHhccccCChhhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 044770 272 YVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSM 332 (464)
Q Consensus 272 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 332 (464)
+..+...+...|++++|...|++..+.. +.+...+..+..++...|++++|...+++..+
T Consensus 12 ~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 71 (91)
T 1na3_A 12 WYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALE 71 (91)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 4444444555555555555555554421 22344455555555555555555555555554
No 210
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.23 E-value=0.0014 Score=45.91 Aligned_cols=63 Identities=14% Similarity=0.113 Sum_probs=36.5
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCccHHHHHHHHHHHHhcCChHHHHHHHHHhH
Q 044770 303 ATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGM 366 (464)
Q Consensus 303 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 366 (464)
+...+..+...|...|++++|+..|++..+.... +...|..+..++...|++++|...+++++
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al 68 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDPD-YVGTYYHLGKLYERLDRTDDAIDTYAQGI 68 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3445555666666666666666666666553211 34455556666666666666666666664
No 211
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.18 E-value=0.012 Score=51.46 Aligned_cols=142 Identities=11% Similarity=-0.045 Sum_probs=80.1
Q ss_pred CCcHhHHHHHHHHHH--hc---ChhhHHHHHHHHHHhccCCCChhhHHHHHHHHHh---hc-----ChhhHHHHHHHh--
Q 044770 197 EPNEVSYCILATAHA--VA---RLYTVAETYVEALEKSMTGNNWSTLDVLIILYGY---LA-----KGKDLERIWATV-- 261 (464)
Q Consensus 197 ~p~~~~~~~li~~~~--~~---~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~-----~~~~a~~~~~~~-- 261 (464)
+.+...|...+++.. .. .+..+|..+|++..+.. +.....+..+..++.. .+ ........++..
T Consensus 191 p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lD-P~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a 269 (372)
T 3ly7_A 191 PHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSS-PEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVT 269 (372)
T ss_dssp CSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHh
Confidence 445666666665533 22 23466777777776642 2223334333333321 01 011111111111
Q ss_pred ccCCCCchhhHHHHHHHhhccCChHHHHHHHHHHHhccccCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCccHHH
Q 044770 262 QELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAIT 341 (464)
Q Consensus 262 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~ 341 (464)
....+.++..+..+...+...|++++|...+++....+ |+...|..+...+.-.|++++|.+.|.+... +.|...|
T Consensus 270 ~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~Alr--L~P~~~t 345 (372)
T 3ly7_A 270 LPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFN--LRPGANT 345 (372)
T ss_dssp CGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSCSHHH
T ss_pred cccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCcCh
Confidence 12335556666666666666788888888888877755 5666666667777778888888888877777 4566666
Q ss_pred HH
Q 044770 342 YR 343 (464)
Q Consensus 342 ~~ 343 (464)
|.
T Consensus 346 ~~ 347 (372)
T 3ly7_A 346 LY 347 (372)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 212
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.14 E-value=0.0044 Score=56.49 Aligned_cols=96 Identities=9% Similarity=0.094 Sum_probs=73.9
Q ss_pred HHHhhccCChHHHHHHHHHHHhcc---ccC----ChhhHHHHHHHHHhcCChhHHHHHHHHHHh-----CC-CCcc-HHH
Q 044770 276 IEAFGRIAQVSRAEELWLEMQSVK---QLK----ATEQYNSVISVYCKNGFIDKASGLLKEMSM-----NG-CKPN-AIT 341 (464)
Q Consensus 276 ~~~~~~~g~~~~a~~~~~~~~~~~---~~~----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~-----~g-~~p~-~~~ 341 (464)
+..+.+.|++++|..++++..+.. ..| ...+++.+..+|...|++++|+.++++.++ .| --|+ ..+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 455667789999999998887531 112 245788899999999999999999988764 22 2233 367
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHhHHHHhh
Q 044770 342 YRHLALGCFKSNLVEEGFKALELGMKLITT 371 (464)
Q Consensus 342 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 371 (464)
++.+...|...|++++|..+++++++....
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~ 403 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFDIMRV 403 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence 888999999999999999999999877554
No 213
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.05 E-value=0.0028 Score=44.32 Aligned_cols=25 Identities=16% Similarity=0.117 Sum_probs=9.9
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHH
Q 044770 306 QYNSVISVYCKNGFIDKASGLLKEM 330 (464)
Q Consensus 306 ~~~~li~~~~~~~~~~~a~~~~~~m 330 (464)
.|..+..+|...|++++|...|++.
T Consensus 43 a~~~lg~~~~~~g~~~~A~~~~~~a 67 (100)
T 3ma5_A 43 TYYHLGKLYERLDRTDDAIDTYAQG 67 (100)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3333333344444444444433333
No 214
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=97.01 E-value=0.033 Score=40.21 Aligned_cols=66 Identities=11% Similarity=-0.068 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHhHHHHhhhhhcCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCC
Q 044770 340 ITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYT 413 (464)
Q Consensus 340 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 413 (464)
..+...+......|+-++-.+++...+ .+..|++...-.+..+|.+.|+..+|.+++.+..+.|++
T Consensus 92 e~vd~ALd~lv~~~KkDqLdki~~~~l--------~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 92 EHVNKALDILVIQGKRDKLEEIGREIL--------KNNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 157 (172)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHC----------CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHhccHhHHHHHHHHHh--------ccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence 344455556666666666666666631 345556666667777777777777777777777777753
No 215
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.94 E-value=0.0045 Score=56.33 Aligned_cols=90 Identities=13% Similarity=-0.040 Sum_probs=70.0
Q ss_pred ccCChHHHHHHHHHHHhc---cccC----ChhhHHHHHHHHHhcCChhHHHHHHHHHHh-----CC-CCcc-HHHHHHHH
Q 044770 281 RIAQVSRAEELWLEMQSV---KQLK----ATEQYNSVISVYCKNGFIDKASGLLKEMSM-----NG-CKPN-AITYRHLA 346 (464)
Q Consensus 281 ~~g~~~~a~~~~~~~~~~---~~~~----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~-----~g-~~p~-~~~~~~ll 346 (464)
..|++++|..++++..+. -..| ...+++.+..+|...|++++|..++++.++ .| --|+ ..+++.+.
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 457889999999876652 1222 245789999999999999999999988764 22 2233 36788999
Q ss_pred HHHHhcCChHHHHHHHHHhHHHHh
Q 044770 347 LGCFKSNLVEEGFKALELGMKLIT 370 (464)
Q Consensus 347 ~~~~~~~~~~~a~~~~~~~~~~~~ 370 (464)
..|...|++++|..+++++++...
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~i~~ 413 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIAIME 413 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHHHHH
Confidence 999999999999999999987654
No 216
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=96.65 E-value=0.00011 Score=65.55 Aligned_cols=245 Identities=11% Similarity=0.105 Sum_probs=162.8
Q ss_pred CchhHHHHHHHHHhhcChHHHHHHhhhcCCCCCchhHHHHHHHHHHhhCcHHHHHHHHHHHHHcCCCCchhhHHHHHHHh
Q 044770 61 KELDYSYLLEFTIKNHGISQGEKLFCCIPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILN 140 (464)
Q Consensus 61 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~ 140 (464)
.+.+|+.|..+....+++.+|++.|-+.. |+..|..+|.+..+.|.+++-+..+...++.. -+...=+.|+-+|
T Consensus 53 ~p~VWs~LgkAqL~~~~v~eAIdsyIkA~----Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~--ke~~IDteLi~ay 126 (624)
T 3lvg_A 53 EPAVWSQLAKAQLQKGMVKEAIDSYIKAD----DPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFAL 126 (624)
T ss_dssp CCCCSSSHHHHTTTSSSCTTTTTSSCCCS----CCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTC--CSTTTTHHHHHHH
T ss_pred CccHHHHHHHHHHccCchHHHHHHHHhCC----ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh--cccccHHHHHHHH
Confidence 34567778888887787777776665543 45566777888888888888887776655542 2334445677788
Q ss_pred cCCCCcccHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhCC--------------------CCCcH
Q 044770 141 SSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSE--------------------VEPNE 200 (464)
Q Consensus 141 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~--------------------~~p~~ 200 (464)
++.++..+..+++. .||..-...+.+-|...|.++.|.-+|..+.... -.-++
T Consensus 127 Ak~~rL~elEefl~-------~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~ 199 (624)
T 3lvg_A 127 AKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANST 199 (624)
T ss_dssp HTSCSSSTTTSTTS-------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSS
T ss_pred HhhCcHHHHHHHHc-------CCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCCh
Confidence 88887766554432 4555555666677777777777666665542211 13367
Q ss_pred hHHHHHHHHHHhcChhhHHHHHHHHHHhccCCCChhhHHHHHHHHHhhcChhhHHHHHHHhccCCCCchhhHHHHHHHhh
Q 044770 201 VSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFG 280 (464)
Q Consensus 201 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 280 (464)
.||..+-.+|...+++.-|...--.+.-+ ++ -...++..|-..|.+++.+.+++.-..........|+-|.-.|+
T Consensus 200 ktWKeV~~ACvd~~EfrLAqicGLniIvh---ad--eL~elv~~YE~~G~f~ELIsLlEaglglErAHmGmFTELaILYs 274 (624)
T 3lvg_A 200 RTWKEVCFACVDGKEFRLAQMCGLHIVVH---AD--ELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYS 274 (624)
T ss_dssp CSHHHHTHHHHHSCTTTTTTHHHHHHHCC---SS--CCSGGGSSSSTTCCCTTSTTTHHHHTTSTTCCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHhCchHHHHHHHhcchhccc---HH--HHHHHHHHHHhCCCHHHHHHHHHHHhCCCchhHHHHHHHHHHHH
Confidence 88999999999999988776554444332 21 22345667888899999999999888777778888999888888
Q ss_pred ccCChHHHHHHHHHHHhccccC-------ChhhHHHHHHHHHhcCChhHHH
Q 044770 281 RIAQVSRAEELWLEMQSVKQLK-------ATEQYNSVISVYCKNGFIDKAS 324 (464)
Q Consensus 281 ~~g~~~~a~~~~~~~~~~~~~~-------~~~~~~~li~~~~~~~~~~~a~ 324 (464)
+- ++++.++.++....+-..| ....|.-++-.|++-.+++.|.
T Consensus 275 KY-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~ 324 (624)
T 3lvg_A 275 KF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAI 324 (624)
T ss_dssp SS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHH
T ss_pred hc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHH
Confidence 75 4555555554433221112 3446778888888777777654
No 217
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.56 E-value=0.087 Score=52.66 Aligned_cols=154 Identities=11% Similarity=-0.015 Sum_probs=86.4
Q ss_pred HHHccCChhHHHH-HHHHHHhCCCCCcHhHHHHHHHHHHhcChhhHHHHHHHHHHhccCCCChhhHHHHHHHHHhhcChh
Q 044770 174 IEANDHNIEGLMK-VYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGK 252 (464)
Q Consensus 174 ~~~~~~~~~~a~~-~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 252 (464)
.....+++++|.+ ++..+ |+......++..+.+.|.++.|.++.+.- ..-.......|+++
T Consensus 608 ~~~~~~~~~~a~~~~l~~i------~~~~~~~~~~~~l~~~~~~~~a~~~~~~~------------~~~f~~~l~~~~~~ 669 (814)
T 3mkq_A 608 TLTLRGEIEEAIENVLPNV------EGKDSLTKIARFLEGQEYYEEALNISPDQ------------DQKFELALKVGQLT 669 (814)
T ss_dssp HHHHTTCHHHHHHHTGGGC------CCHHHHHHHHHHHHHTTCHHHHHHHCCCH------------HHHHHHHHHHTCHH
T ss_pred HHHHhCCHHHHHHHHHhcC------CchHHHHHHHHHHHhCCChHHheecCCCc------------chheehhhhcCCHH
Confidence 3345677777765 44111 11222356666677777777777654211 01123345667777
Q ss_pred hHHHHHHHhccCCCCchhhHHHHHHHhhccCChHHHHHHHHHHHhccccCChhhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 044770 253 DLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSM 332 (464)
Q Consensus 253 ~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 332 (464)
.|.++.+.+ .+...|..+...+.+.|+++.|.+.|..+.+ |..+...+...|+.+....+-+....
T Consensus 670 ~A~~~~~~~-----~~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~~ 735 (814)
T 3mkq_A 670 LARDLLTDE-----SAEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAET 735 (814)
T ss_dssp HHHHHHTTC-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhh-----CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHHH
Confidence 777765433 2345677888888888888888888877655 45555555556666655555444444
Q ss_pred CCCCccHHHHHHHHHHHHhcCChHHHHHHHHHh
Q 044770 333 NGCKPNAITYRHLALGCFKSNLVEEGFKALELG 365 (464)
Q Consensus 333 ~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 365 (464)
.|- ++....++.+.|++++|++++.++
T Consensus 736 ~~~------~~~A~~~~~~~g~~~~a~~~~~~~ 762 (814)
T 3mkq_A 736 TGK------FNLAFNAYWIAGDIQGAKDLLIKS 762 (814)
T ss_dssp TTC------HHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred cCc------hHHHHHHHHHcCCHHHHHHHHHHc
Confidence 331 122333344556666665555444
No 218
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.48 E-value=0.053 Score=54.19 Aligned_cols=27 Identities=7% Similarity=-0.162 Sum_probs=13.3
Q ss_pred hhhHHHHHHHhcCCCCcccHHHHHHHH
Q 044770 130 YLVFNRLIILNSSPGRRKTIPNILRQM 156 (464)
Q Consensus 130 ~~~~~~l~~~~~~~~~~~~a~~~~~~~ 156 (464)
...|..+...+.+.++++.|.+.|..+
T Consensus 681 ~~~W~~la~~al~~~~~~~A~~~y~~~ 707 (814)
T 3mkq_A 681 EMKWRALGDASLQRFNFKLAIEAFTNA 707 (814)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 344445555555555555555555444
No 219
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=96.34 E-value=0.24 Score=41.55 Aligned_cols=124 Identities=10% Similarity=0.030 Sum_probs=78.5
Q ss_pred cChHHHHHHhhhcCCCCCchhHHHHHHHH-HHhh--C------cHHHHHHHHHHHHHcCCCCc---hhhHHHHHHHhcC-
Q 044770 76 HGISQGEKLFCCIPKDYQNELLYNNLVIA-CLDK--G------VIKLSLEYMKKMRVLGHSIS---YLVFNRLIILNSS- 142 (464)
Q Consensus 76 g~~~~a~~~~~~~~~~~~~~~~~~~li~~-~~~~--~------~~~~a~~~~~~m~~~~~~~~---~~~~~~l~~~~~~- 142 (464)
++..+..+.+.+.....+....|..++.+ +... | ....|...+++.++. .|+ -..|..+...|.+
T Consensus 135 ~~~~~~~~~l~~~~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleL--DP~~~~GsA~~~LG~lY~~v 212 (301)
T 3u64_A 135 GDEQRLHKVLSRCTRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDL--WPSYQEGAVWNVLTKFYAAA 212 (301)
T ss_dssp SCHHHHHHHHTTCCGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHH--CTTHHHHHHHHHHHHHHHHS
T ss_pred cchhhHHHHHHHcCccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHhC
Confidence 33344445555554433445566666543 2332 2 246677777777764 344 4567777777777
Q ss_pred ----CCCcccHHHHHHHHHhCCCCCChhhHHHHHHHHHcc-CChhHHHHHHHHHHhCCCC--CcHh
Q 044770 143 ----PGRRKTIPNILRQMKADKVAPHVSTFHILMKIEAND-HNIEGLMKVYSDMKRSEVE--PNEV 201 (464)
Q Consensus 143 ----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~m~~~~~~--p~~~ 201 (464)
.|+.++|.+.|++.++.+-.-+..++....+.++.. |+.+++.+.+++..+.... |+..
T Consensus 213 Pp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~~~P~~~ 278 (301)
T 3u64_A 213 PESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPESVPHNK 278 (301)
T ss_dssp CTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGGGCSSCH
T ss_pred CCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCCChh
Confidence 488888888888888753112366777777777774 8888888888888876544 4443
No 220
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=96.30 E-value=0.017 Score=39.90 Aligned_cols=58 Identities=16% Similarity=0.071 Sum_probs=44.1
Q ss_pred HHHHhhccCChHHHHHHHHHHHhccccCChh-hHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 044770 275 AIEAFGRIAQVSRAEELWLEMQSVKQLKATE-QYNSVISVYCKNGFIDKASGLLKEMSMN 333 (464)
Q Consensus 275 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~li~~~~~~~~~~~a~~~~~~m~~~ 333 (464)
....+...|++++|...|+...+.. +.+.. .|..+..+|...|++++|...|++..+.
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 64 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTE-PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL 64 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC-SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 4556677888888888888887743 33556 7778888888888888888888888874
No 221
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=96.12 E-value=0.069 Score=37.35 Aligned_cols=77 Identities=12% Similarity=-0.019 Sum_probs=58.9
Q ss_pred cHHHHHHHHHHHHhcCChHHHHHHHHHhHHHHhhhhhcCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCcHH
Q 044770 338 NAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTF 417 (464)
Q Consensus 338 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~ 417 (464)
+..-...+...+...++++.|...++.+++.... ....-.+....+..|..+|.+.|+++.|...+++..+.. |+..
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~-~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~--P~~~ 80 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDE-GEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELD--PEHQ 80 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHT-TCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhc-cCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC--CCCH
Confidence 4455567788889999999999999999765432 111223466788999999999999999999999998753 5543
No 222
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=96.01 E-value=0.37 Score=37.09 Aligned_cols=48 Identities=8% Similarity=0.122 Sum_probs=30.6
Q ss_pred HHHHccCChhHHHHHHHHHHhCCCCCcHhHHHHHHHHHHhcChhhHHHHHHHHH
Q 044770 173 KIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEAL 226 (464)
Q Consensus 173 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~ 226 (464)
....+.|+++.|.++.+++ -+...|..+.......|+++-|.+.|.+.
T Consensus 13 ~LAL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~ 60 (177)
T 3mkq_B 13 DLALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQ 60 (177)
T ss_dssp HHHHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred HHHHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHh
Confidence 3445567777777666655 15566777777777777777776666654
No 223
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=95.87 E-value=0.047 Score=37.29 Aligned_cols=48 Identities=6% Similarity=0.059 Sum_probs=23.5
Q ss_pred cccHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhC
Q 044770 146 RKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRS 194 (464)
Q Consensus 146 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 194 (464)
.++|..++++.++.. +-+......+...+.+.|++++|...|+.+.+.
T Consensus 25 ~~~A~~~l~~AL~~d-p~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~ 72 (93)
T 3bee_A 25 TDEVSLLLEQALQLE-PYNEAALSLIANDHFISFRFQEAIDTWVLLLDS 72 (93)
T ss_dssp CHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 345555555554433 333344444445555555555555555555544
No 224
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=95.84 E-value=0.36 Score=37.15 Aligned_cols=99 Identities=14% Similarity=0.021 Sum_probs=49.5
Q ss_pred HHhcChhhHHHHHHHHHHhccCCCChhhHHHHHHHHHhhcChhhHHHHHHHhccCCCCchhhHHHHHHHhhccCChHHHH
Q 044770 210 HAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAE 289 (464)
Q Consensus 210 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 289 (464)
..+.|+++.|.++.+.+ .+...|..+.......|+.+-|++.|..... +..+.-.|.-.|+.+.-.
T Consensus 15 AL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D--------~~~L~~Ly~~tg~~e~L~ 80 (177)
T 3mkq_B 15 ALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS--------FDKLSFLYLVTGDVNKLS 80 (177)
T ss_dssp HHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC--------HHHHHHHHHHHTCHHHHH
T ss_pred HHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC--------HHHHHHHHHHhCCHHHHH
Confidence 34556666666665544 2345555555555555555555555555433 344444444455544444
Q ss_pred HHHHHHHhccccCChhhHHHHHHHHHhcCChhHHHHHHH
Q 044770 290 ELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLK 328 (464)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~ 328 (464)
++-+.....| -++.....+...|+++++.++|.
T Consensus 81 kla~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~ 113 (177)
T 3mkq_B 81 KMQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFA 113 (177)
T ss_dssp HHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHH
Confidence 3333333222 24444444455555555555553
No 225
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=95.73 E-value=0.078 Score=36.36 Aligned_cols=52 Identities=10% Similarity=0.052 Sum_probs=24.9
Q ss_pred HhhcChhhHHHHHHHhccCCCCchh-hHHHHHHHhhccCChHHHHHHHHHHHh
Q 044770 246 GYLAKGKDLERIWATVQELPNVRSK-SYVLAIEAFGRIAQVSRAEELWLEMQS 297 (464)
Q Consensus 246 ~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~ 297 (464)
...|++++|...++......+.+.. .+..+..+|...|++++|...|++..+
T Consensus 11 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~ 63 (99)
T 2kc7_A 11 INQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIE 63 (99)
T ss_dssp HHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 3344444444444444333333333 444555555555555555555555554
No 226
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=95.69 E-value=0.39 Score=34.81 Aligned_cols=60 Identities=15% Similarity=0.074 Sum_probs=30.2
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCccHHHHHHHHHHHHhcCChHHHHHHHHHh
Q 044770 305 EQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELG 365 (464)
Q Consensus 305 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 365 (464)
......++.+...|+-+.-.+++.++.. +.+|++.....+..+|.+.|+..+|.+++.++
T Consensus 92 e~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~A 151 (172)
T 1wy6_A 92 EHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEA 151 (172)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHH
Confidence 3444445555555555555555555332 13445555555555555555555555555555
No 227
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=95.66 E-value=0.089 Score=39.41 Aligned_cols=81 Identities=11% Similarity=0.039 Sum_probs=49.7
Q ss_pred HHHHHHhccCCCCchhhHHHHHHHhhccC---ChHHHHHHHHHHHhccccC--ChhhHHHHHHHHHhcCChhHHHHHHHH
Q 044770 255 ERIWATVQELPNVRSKSYVLAIEAFGRIA---QVSRAEELWLEMQSVKQLK--ATEQYNSVISVYCKNGFIDKASGLLKE 329 (464)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~~~~~--~~~~~~~li~~~~~~~~~~~a~~~~~~ 329 (464)
.+.|.......+++..+...+..++++.+ +.+++..+|+...+.. .| ....+-.+.-+|.+.|++++|.+.++.
T Consensus 18 ~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~ 96 (152)
T 1pc2_A 18 EKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKALKYVRG 96 (152)
T ss_dssp HHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred HHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 33333333333455555556666666666 5557777777777643 12 344555566677788888888888887
Q ss_pred HHhCCCCcc
Q 044770 330 MSMNGCKPN 338 (464)
Q Consensus 330 m~~~g~~p~ 338 (464)
+.+ +.|+
T Consensus 97 lL~--ieP~ 103 (152)
T 1pc2_A 97 LLQ--TEPQ 103 (152)
T ss_dssp HHH--HCTT
T ss_pred HHh--cCCC
Confidence 777 4564
No 228
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=95.63 E-value=0.11 Score=35.30 Aligned_cols=28 Identities=4% Similarity=-0.219 Sum_probs=12.0
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 044770 305 EQYNSVISVYCKNGFIDKASGLLKEMSM 332 (464)
Q Consensus 305 ~~~~~li~~~~~~~~~~~a~~~~~~m~~ 332 (464)
.....+...+.+.|++++|+..|+++.+
T Consensus 44 rA~~~lg~~~~~~g~y~~Ai~~w~~~l~ 71 (93)
T 3bee_A 44 AALSLIANDHFISFRFQEAIDTWVLLLD 71 (93)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 3333334444444444444444444443
No 229
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=95.61 E-value=2.1 Score=42.69 Aligned_cols=255 Identities=10% Similarity=0.003 Sum_probs=121.2
Q ss_pred HHhhcChHHHHHHhhhcCCC----CCchhHHHHHHHHHHhhCcHHHHHHHHHHHHHcCC-------CCchhhHHHHHHHh
Q 044770 72 TIKNHGISQGEKLFCCIPKD----YQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGH-------SISYLVFNRLIILN 140 (464)
Q Consensus 72 ~~~~g~~~~a~~~~~~~~~~----~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~-------~~~~~~~~~l~~~~ 140 (464)
....|+.++++.+++..... .+....-..+.-+....|..+++..++.......- .+....-..+.-++
T Consensus 384 lIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGl 463 (963)
T 4ady_A 384 VIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGL 463 (963)
T ss_dssp HHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHH
T ss_pred hhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHHH
Confidence 44566777777777765541 11122223333444455554566666655544211 01111122222223
Q ss_pred cCCCC-cccHHHHHHHHHhCCCCCChhhHH--HHHHHHHccCChhHHHHHHHHHHhCCCCCcHhHHHHHHH--HHHhcCh
Q 044770 141 SSPGR-RKTIPNILRQMKADKVAPHVSTFH--ILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILAT--AHAVARL 215 (464)
Q Consensus 141 ~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~--~~~~~~~ 215 (464)
+-.|. -+++.+.+..+.... .+...... +|...+.-.|+.+....++..+.+. . +..+...+.- ++...|+
T Consensus 464 a~~GS~~eev~e~L~~~L~dd-~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~--~-~e~vrR~aalgLGll~~g~ 539 (963)
T 4ady_A 464 AAMGSANIEVYEALKEVLYND-SATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQET--Q-HGNITRGLAVGLALINYGR 539 (963)
T ss_dssp HSTTCCCHHHHHHHHHHHHTC-CHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHC--S-CHHHHHHHHHHHHHHTTTC
T ss_pred HhcCCCCHHHHHHHHHHHhcC-CHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhcc--C-cHHHHHHHHHHHHhhhCCC
Confidence 22332 234555555555421 11111111 2233344556666666666666543 1 2222222222 3445677
Q ss_pred hhHHHHHHHHHHhccCCCChhh--HHHHHHHHHhhcChhhHHHHHHHhccCCCCchhhHHHHHHHhhccCChHHHHHHHH
Q 044770 216 YTVAETYVEALEKSMTGNNWST--LDVLIILYGYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWL 293 (464)
Q Consensus 216 ~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 293 (464)
.+.+..+++.+... ..|.... ...+.-+|+..|+.....+++..+......+......+.-++...|+.+.+.++++
T Consensus 540 ~e~~~~li~~L~~~-~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~~d~VRraAViaLGlI~~g~~e~v~rlv~ 618 (963)
T 4ady_A 540 QELADDLITKMLAS-DESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDSNDDVRRAAVIALGFVLLRDYTTVPRIVQ 618 (963)
T ss_dssp GGGGHHHHHHHHHC-SCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTSSSCSSHHHHTT
T ss_pred hHHHHHHHHHHHhC-CCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCCcHHHHHHHHHHHHhhccCCHHHHHHHHH
Confidence 77777777766543 1121111 12233456666777666667777766544443333333334445566666667766
Q ss_pred HHHhccccCChhhHHHHHHHHHhcCCh-hHHHHHHHHHHh
Q 044770 294 EMQSVKQLKATEQYNSVISVYCKNGFI-DKASGLLKEMSM 332 (464)
Q Consensus 294 ~~~~~~~~~~~~~~~~li~~~~~~~~~-~~a~~~~~~m~~ 332 (464)
.+.+.+ .|.+..-..+..+....|.. .+++.++..+..
T Consensus 619 ~L~~~~-d~~VR~gAalALGli~aGn~~~~aid~L~~L~~ 657 (963)
T 4ady_A 619 LLSKSH-NAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK 657 (963)
T ss_dssp TGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT
T ss_pred HHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc
Confidence 555532 23433333344444444443 467777777764
No 230
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=95.20 E-value=0.18 Score=35.19 Aligned_cols=66 Identities=14% Similarity=-0.005 Sum_probs=43.3
Q ss_pred HHHHHHHhhccCChHHHHHHHHHHHhcc------ccCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCccH
Q 044770 272 YVLAIEAFGRIAQVSRAEELWLEMQSVK------QLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNA 339 (464)
Q Consensus 272 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~------~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~ 339 (464)
+..+...+...|+++.|...|+...+.. ..+....+..+..++.+.|+++.|+..+++..+ +.|+.
T Consensus 8 c~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~--l~P~~ 79 (104)
T 2v5f_A 8 CFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE--LDPEH 79 (104)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTC
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHh--cCCCC
Confidence 4456666667777777777776655431 122445677777778888888888888887776 44543
No 231
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=95.16 E-value=0.12 Score=38.66 Aligned_cols=78 Identities=15% Similarity=0.076 Sum_probs=37.1
Q ss_pred HHHHHHHHHhCCCCCChhhHHHHHHHHHccC---ChhHHHHHHHHHHhCCCCC--cHhHHHHHHHHHHhcChhhHHHHHH
Q 044770 149 IPNILRQMKADKVAPHVSTFHILMKIEANDH---NIEGLMKVYSDMKRSEVEP--NEVSYCILATAHAVARLYTVAETYV 223 (464)
Q Consensus 149 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~m~~~~~~p--~~~~~~~li~~~~~~~~~~~a~~~~ 223 (464)
+.+-|.+..+.| +++..+...+..++++.+ +.+++..+|++..+.. .| ....+-.+.-++.+.|++++|.+++
T Consensus 17 ~~~~y~~e~~~~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~ 94 (152)
T 1pc2_A 17 FEKKFQSEKAAG-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKALKYV 94 (152)
T ss_dssp HHHHHHHHHHTT-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHHHHHccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHHHHH
Confidence 333444444433 344444444555555554 3445555555555432 12 1233333444455555555555555
Q ss_pred HHHHh
Q 044770 224 EALEK 228 (464)
Q Consensus 224 ~~~~~ 228 (464)
+.+.+
T Consensus 95 ~~lL~ 99 (152)
T 1pc2_A 95 RGLLQ 99 (152)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 55555
No 232
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=95.09 E-value=1.6e-05 Score=70.85 Aligned_cols=264 Identities=12% Similarity=0.079 Sum_probs=156.8
Q ss_pred chhHHHHHHHHHHhhCcHHHHHHHHHHHHHcCCCCchhhHHHHHHHhcCCCCcccHHHHHHHHHhCCCCCChhhHHHHHH
Q 044770 94 NELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMK 173 (464)
Q Consensus 94 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 173 (464)
....|..|..+....++..+|++.| ++. -|...|..++.+..+.|.+++-.+.+....+.. .+...=+.|+-
T Consensus 53 ~p~VWs~LgkAqL~~~~v~eAIdsy---IkA---~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~--ke~~IDteLi~ 124 (624)
T 3lvg_A 53 EPAVWSQLAKAQLQKGMVKEAIDSY---IKA---DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIF 124 (624)
T ss_dssp CCCCSSSHHHHTTTSSSCTTTTTSS---CCC---SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTC--CSTTTTHHHHH
T ss_pred CccHHHHHHHHHHccCchHHHHHHH---HhC---CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh--cccccHHHHHH
Confidence 3456777777777777666666554 222 255667777777777777777777766555442 23333346677
Q ss_pred HHHccCChhHHHHHHHHHHhCCCCCcHhHHHHHHHHHHhcChhhHHHHHHHHHHhccCCCChhhHHHHHHHHHhhcChhh
Q 044770 174 IEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKD 253 (464)
Q Consensus 174 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 253 (464)
+|++.++..+..+++ -.||..-...+..-|...|.++.|.-+|..+.. |..|...+.+.|++..
T Consensus 125 ayAk~~rL~elEefl-------~~~N~A~iq~VGDrcf~e~lYeAAKilys~isN---------~akLAstLV~L~~yq~ 188 (624)
T 3lvg_A 125 ALAKTNRLAELEEFI-------NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSN---------FGRLASTLVHLGEYQA 188 (624)
T ss_dssp HHHTSCSSSTTTSTT-------SCCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCC---------CTTTSSSSSSCSGGGS
T ss_pred HHHhhCcHHHHHHHH-------cCCCcccHHHHHHHHHHccCHHHHHHHHHhCcc---------HHHHHHHHHHHHHHHH
Confidence 777777765533222 135555556666666667777666655543322 2223333445555544
Q ss_pred HHHHHHHhccCCCCchhhHHHHHHHhhccCChHHHHHHHHHHHhccccCChhhHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 044770 254 LERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMN 333 (464)
Q Consensus 254 a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 333 (464)
|.+.- ....++.+|-.+-.+|...+.+.-|...--.+.- .......++.-|-..|.+++-+.+++.-...
T Consensus 189 AVdaA-----rKAns~ktWKeV~~ACvd~~EfrLAqicGLniIv-----hadeL~elv~~YE~~G~f~ELIsLlEaglgl 258 (624)
T 3lvg_A 189 AVDGA-----RKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVV-----HADELEELINYYQDRGYFEELITMLEAALGL 258 (624)
T ss_dssp STTTT-----TTCCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHC-----CSSCCSGGGSSSSTTCCCTTSTTTHHHHTTS
T ss_pred HHHHH-----HhcCChhHHHHHHHHHhCchHHHHHHHhcchhcc-----cHHHHHHHHHHHHhCCCHHHHHHHHHHHhCC
Confidence 43211 2234555688888888888888777655444432 1223444666778888888888888877642
Q ss_pred CCCccHHHHHHHHHHHHhcCChHHHHHHHHHhHHHHhhhhhcCCCCcHHHHHHHHHHHHhcCChhhHHHHHHH
Q 044770 334 GCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEE 406 (464)
Q Consensus 334 g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 406 (464)
-+.....|+-|.-.|++- ++++..+.++.. ..+.|+. -+|++|....-|.++.-++..
T Consensus 259 -ErAHmGmFTELaILYsKY-~PeKlmEHlklf----------~sriNip---KviracE~ahLW~ElvfLY~~ 316 (624)
T 3lvg_A 259 -ERAHMGMFTELAILYSKF-KPQKMREHLELF----------WSRVNIP---KVLRAAEQAHLWAELVFLYDK 316 (624)
T ss_dssp -TTCCHHHHHHHHHHHHSS-CTTHHHHHHTTS----------SSSSCCT---TTHHHHTTTTCHHHHHHHHHH
T ss_pred -CchhHHHHHHHHHHHHhc-CHHHHHHHHHHH----------HHhccHH---HHHHHHHHHhhHHHHHHHHhc
Confidence 245667777777777664 445544444333 2233332 578888888888888777654
No 233
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=94.93 E-value=0.46 Score=35.22 Aligned_cols=64 Identities=14% Similarity=0.050 Sum_probs=45.6
Q ss_pred cCChHHHHHHHHHHHhccccCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCccHHHHHHHHH
Q 044770 282 IAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLAL 347 (464)
Q Consensus 282 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~ 347 (464)
.+++++|.++|+.+.+.+-.- ...|.....--.++|+...|.+++...+..+.+|. ..+.+.++
T Consensus 73 i~D~d~aR~vy~~a~~~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~-~~le~a~~ 136 (161)
T 4h7y_A 73 IQEPDDARDYFQMARANCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPL-EMLEIALR 136 (161)
T ss_dssp HHCGGGCHHHHHHHHHHCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCH-HHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcH-HHHHHHHH
Confidence 478899999999987653333 55566666666789999999999999998776643 33444443
No 234
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=94.76 E-value=0.13 Score=43.10 Aligned_cols=94 Identities=12% Similarity=0.034 Sum_probs=73.8
Q ss_pred hHHHHHHhhhcCCCCCc---hhHHHHHHHHHHh-----hCcHHHHHHHHHHHHHcCCCCchhhHHHHHHHhcCC-CCccc
Q 044770 78 ISQGEKLFCCIPKDYQN---ELLYNNLVIACLD-----KGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSP-GRRKT 148 (464)
Q Consensus 78 ~~~a~~~~~~~~~~~~~---~~~~~~li~~~~~-----~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~-~~~~~ 148 (464)
...|+..+++..+..|+ -..|..+...|.. .|+.++|.+.|++.++.+..-+..++......++.. |+.+.
T Consensus 179 l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~ 258 (301)
T 3u64_A 179 VHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAG 258 (301)
T ss_dssp HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHH
T ss_pred HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHH
Confidence 45777777777666554 5689999999999 599999999999999965322478888888988885 99999
Q ss_pred HHHHHHHHHhCCCC--CChhhHHHH
Q 044770 149 IPNILRQMKADKVA--PHVSTFHIL 171 (464)
Q Consensus 149 a~~~~~~~~~~~~~--~~~~~~~~l 171 (464)
+.+.+++.++.... |+....+.+
T Consensus 259 a~~~L~kAL~a~p~~~P~~~lan~~ 283 (301)
T 3u64_A 259 FDEALDRALAIDPESVPHNKLLVIL 283 (301)
T ss_dssp HHHHHHHHHHCCGGGCSSCHHHHHH
T ss_pred HHHHHHHHHcCCCCCCCChhHHHHH
Confidence 99999999987655 665544433
No 235
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=94.26 E-value=4.9 Score=40.13 Aligned_cols=172 Identities=15% Similarity=0.083 Sum_probs=83.6
Q ss_pred HHhhcChhhHHHHHHHhccCCCCchhhHHHHHHHhhccCChHHHHHHHHHHHhccccCChhhHH---HHHHHHHhcCChh
Q 044770 245 YGYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYN---SVISVYCKNGFID 321 (464)
Q Consensus 245 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~---~li~~~~~~~~~~ 321 (464)
+.-.|+.+....++..+.+....+..-+..+.-++...|+.+.+..+++.+... ..|.. -|. ++..+|+..|+..
T Consensus 500 ~vGTgn~~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~~e~~~~li~~L~~~-~dp~v-Rygaa~alglAyaGTGn~~ 577 (963)
T 4ady_A 500 MLGTGKPEAIHDMFTYSQETQHGNITRGLAVGLALINYGRQELADDLITKMLAS-DESLL-RYGGAFTIALAYAGTGNNS 577 (963)
T ss_dssp HTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCGGGGHHHHHHHHHC-SCHHH-HHHHHHHHHHHTTTSCCHH
T ss_pred hcccCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhhhCCChHHHHHHHHHHHhC-CCHHH-HHHHHHHHHHHhcCCCCHH
Confidence 334455555566666555433222222233333344566777777776666652 11221 222 2334555666765
Q ss_pred HHHHHHHHHHhCCCCccHHHHHHHHHHHHhcCChHHHHHHHHHhHHHHhhhhhcCCCCcHHHHHHHHHHHHhcCCh-hhH
Q 044770 322 KASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDV-GNA 400 (464)
Q Consensus 322 ~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~-~~A 400 (464)
....++..+... ...+......+.-++...|+.+.+.++++.+ . ....|.+..-..+.-+....|.. .++
T Consensus 578 aIq~LL~~~~~d-~~d~VRraAViaLGlI~~g~~e~v~rlv~~L-------~-~~~d~~VR~gAalALGli~aGn~~~~a 648 (963)
T 4ady_A 578 AVKRLLHVAVSD-SNDDVRRAAVIALGFVLLRDYTTVPRIVQLL-------S-KSHNAHVRCGTAFALGIACAGKGLQSA 648 (963)
T ss_dssp HHHHHHHHHHHC-SCHHHHHHHHHHHHHHTSSSCSSHHHHTTTG-------G-GCSCHHHHHHHHHHHHHHTSSSCCHHH
T ss_pred HHHHHHHHhccC-CcHHHHHHHHHHHHhhccCCHHHHHHHHHHH-------H-hcCCHHHHHHHHHHHHHhccCCCcHHH
Confidence 555577766653 1222222222223344455655555555544 1 23345555444555555555554 466
Q ss_pred HHHHHHHHHcCCCCcHHHHHHHHHHHHHcC
Q 044770 401 ENLFEELKKANYTKYTFVYNTLIKAYVKAK 430 (464)
Q Consensus 401 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~g 430 (464)
..++..+... +|..+-...+.++..-|
T Consensus 649 id~L~~L~~D---~d~~Vrq~Ai~ALG~Ig 675 (963)
T 4ady_A 649 IDVLDPLTKD---PVDFVRQAAMIALSMIL 675 (963)
T ss_dssp HHHHHHHHTC---SSHHHHHHHHHHHHHHS
T ss_pred HHHHHHHccC---CCHHHHHHHHHHHHHHh
Confidence 7777777653 44444444444444443
No 236
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=94.07 E-value=1.3 Score=32.91 Aligned_cols=112 Identities=10% Similarity=0.064 Sum_probs=72.2
Q ss_pred ccChhchHHHHHHHHhhcch------HHHHHHHHHHHHcCCCCCCch-hHHHHHH------HHHhhcChHHHHHHhhhcC
Q 044770 23 PVHRGEIFHSINRLRKLQLN------KRALEVMEWVIRERPYRPKEL-DYSYLLE------FTIKNHGISQGEKLFCCIP 89 (464)
Q Consensus 23 ~~~~~~~~~~l~~~~~~~~~------~~A~~~~~~~~~~~~~~~~~~-~~~~l~~------~~~~~g~~~~a~~~~~~~~ 89 (464)
|-|.+++...+..+-+.|++ +..+++|+.+... ++|+.. .|...+. .+...+++++|.++|+.+.
T Consensus 10 p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~--~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~ 87 (161)
T 4h7y_A 10 ANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA--LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMAR 87 (161)
T ss_dssp CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH--SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc--CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 45677777788888878888 8888899988874 345432 1111111 1224478888888887764
Q ss_pred CC-CCchhHHHHHHHHHHhhCcHHHHHHHHHHHHHcCCCCchhhHHHHH
Q 044770 90 KD-YQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLI 137 (464)
Q Consensus 90 ~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~ 137 (464)
.. ..=...|......-.+.|++..|.+++...+..+..|. ..+...+
T Consensus 88 ~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~-~~le~a~ 135 (161)
T 4h7y_A 88 ANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPL-EMLEIAL 135 (161)
T ss_dssp HHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCH-HHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcH-HHHHHHH
Confidence 33 11156677777777788888888888888888765543 3344333
No 237
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=93.53 E-value=0.54 Score=33.82 Aligned_cols=60 Identities=8% Similarity=-0.114 Sum_probs=26.6
Q ss_pred HHHHHHhhccCChHH---HHHHHHHHHhcccc-CChhhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 044770 273 VLAIEAFGRIAQVSR---AEELWLEMQSVKQL-KATEQYNSVISVYCKNGFIDKASGLLKEMSM 332 (464)
Q Consensus 273 ~~l~~~~~~~g~~~~---a~~~~~~~~~~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 332 (464)
..+..++.+..+... +..+++.+...+.+ -.....-.+.-++.+.|++++|.+.++.+++
T Consensus 39 F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~ 102 (126)
T 1nzn_A 39 FEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQ 102 (126)
T ss_dssp HHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 333444444443333 44455544442211 1222333344455555555555555555555
No 238
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=92.70 E-value=1.5 Score=31.58 Aligned_cols=89 Identities=12% Similarity=0.117 Sum_probs=64.1
Q ss_pred HHhhccCChHHHHHHHHHHHhccccCChhhHHHHHHHHHhcCChhH---HHHHHHHHHhCCCCc--cHHHHHHHHHHHHh
Q 044770 277 EAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDK---ASGLLKEMSMNGCKP--NAITYRHLALGCFK 351 (464)
Q Consensus 277 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~---a~~~~~~m~~~g~~p--~~~~~~~ll~~~~~ 351 (464)
+..........+.+-|......+. ++..+--.+..++++...... ++.++.+..+.+ .| .......+.-++.+
T Consensus 9 ~~~~~~~~l~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yk 86 (126)
T 1nzn_A 9 NELVSVEDLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYR 86 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHH
T ss_pred hccCCHHHHHHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHH
Confidence 333334455666667766655443 677777778888998887666 899999988864 24 33445566778999
Q ss_pred cCChHHHHHHHHHhHH
Q 044770 352 SNLVEEGFKALELGMK 367 (464)
Q Consensus 352 ~~~~~~a~~~~~~~~~ 367 (464)
.|++++|.++++.+++
T Consensus 87 lg~Y~~A~~~~~~lL~ 102 (126)
T 1nzn_A 87 LKEYEKALKYVRGLLQ 102 (126)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHH
Confidence 9999999999999953
No 239
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=92.62 E-value=7.3 Score=37.14 Aligned_cols=271 Identities=6% Similarity=-0.054 Sum_probs=120.6
Q ss_pred ChHHHHHHhhhcCCCCCchhHHHHHHHHHHhhCcHHHHHHHHHHHHHcCCCCchhhHHHHHHHhcCCCCcccHHHHHHHH
Q 044770 77 GISQGEKLFCCIPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQM 156 (464)
Q Consensus 77 ~~~~a~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 156 (464)
..++....+++.+..+.....-+..+..+.+.+++...+..+.. .+.+...-.....+....|+..+|......+
T Consensus 54 ~~~ev~~Fl~~~~~~p~~~~Lr~~~l~~l~~~~~w~~~l~~~~~-----~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~l 128 (618)
T 1qsa_A 54 PAVTVTNFVRANPTLPPARTLQSRFVNELARREDWRGLLAFSPE-----KPGTTEAQCNYYYAKWNTGQSEEAWQGAKEL 128 (618)
T ss_dssp CHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHCCS-----CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHCCCChhHHHHHHHHHHHHHhCCCHHHHHHhccC-----CCCCHHHHHHHHHHHHHcCChhHHHHHHHHH
Confidence 45566666666655422333344555566667777666664432 2334444445555566666655555555554
Q ss_pred HhCCCCCChhhHHHHHHHHHccCChhH--HHHHHHHHHhCC-----------CCCcHhHH-HHHHHHHHhcChhhHHHHH
Q 044770 157 KADKVAPHVSTFHILMKIEANDHNIEG--LMKVYSDMKRSE-----------VEPNEVSY-CILATAHAVARLYTVAETY 222 (464)
Q Consensus 157 ~~~~~~~~~~~~~~l~~~~~~~~~~~~--a~~~~~~m~~~~-----------~~p~~~~~-~~li~~~~~~~~~~~a~~~ 222 (464)
=..| ......++.++..+.+.|.+.. ...=++.+...| +.++...+ ..++.... ++..+...
T Consensus 129 W~~~-~~~p~~c~~l~~~~~~~g~lt~~~~~~R~~~al~~~~~~~a~~l~~~l~~~~~~~a~~~~al~~---~p~~~~~~ 204 (618)
T 1qsa_A 129 WLTG-KSQPNACDKLFSVWRASGKQDPLAYLERIRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLAN---NPNTVLTF 204 (618)
T ss_dssp HSCS-SCCCTHHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHH---CGGGHHHH
T ss_pred HhCC-CCCcHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHhCCHHHHHHHHHHHHHHh---ChHhHHHH
Confidence 4443 3344455555655555444332 122222222221 11221111 11111111 11111111
Q ss_pred HHHHHhccCCCChhhHHHH---HHHHHhhcChhhHHHHHHHhccCCCCchhh----HHHHHHHhhccCChHHHHHHHHHH
Q 044770 223 VEALEKSMTGNNWSTLDVL---IILYGYLAKGKDLERIWATVQELPNVRSKS----YVLAIEAFGRIAQVSRAEELWLEM 295 (464)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~l---~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~l~~~~~~~g~~~~a~~~~~~~ 295 (464)
... ..++...-..+ +.-+.+ .+.+.|...+.........+... ...+...+...+...++...+...
T Consensus 205 ~~~-----~~~~~~~~~~~~~~~~rlar-~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~ 278 (618)
T 1qsa_A 205 ART-----TGATDFTRQMAAVAFASVAR-QDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDA 278 (618)
T ss_dssp HHH-----SCCCHHHHHHHHHHHHHHHH-HCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHH
T ss_pred Hhc-----cCCChhhHHHHHHHHHHHHh-cCHHHHHHHHHhhhhccCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhc
Confidence 110 12222211111 222222 25667777776665432222222 222333334444344555555554
Q ss_pred HhccccCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCccHHHHHHHHHHHHhcCChHHHHHHHHHh
Q 044770 296 QSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELG 365 (464)
Q Consensus 296 ~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 365 (464)
.... .+.....-.+....+.|+++.|...|..|..... ......--+..+....|+.++|..+|+.+
T Consensus 279 ~~~~--~~~~~~e~~~r~Alr~~d~~~a~~~~~~l~~~~~-~~~r~~YW~~ra~~~~g~~~~a~~~~~~~ 345 (618)
T 1qsa_A 279 IMRS--QSTSLIERRVRMALGTGDRRGLNTWLARLPMEAK-EKDEWRYWQADLLLERGREAEAKEILHQL 345 (618)
T ss_dssp HHTC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHSCTTGG-GSHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred cccC--CChHHHHHHHHHHHHCCCHHHHHHHHHHcccccc-ccHhHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3322 2222222333334456777777777777655211 12333344555666677777777777776
No 240
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=92.58 E-value=0.4 Score=36.28 Aligned_cols=70 Identities=7% Similarity=0.067 Sum_probs=40.5
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHhHHHHhhhhh-----------------cCCCCcHHHHHHHHHHHHhcCChhhHHHHH
Q 044770 342 YRHLALGCFKSNLVEEGFKALELGMKLITTKKV-----------------RSSTPWLETTLSIIEIFAEKGDVGNAENLF 404 (464)
Q Consensus 342 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----------------~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 404 (464)
+..+..++...+++.+|...|+.+++......+ ....++...---+..+|.+.|++++|+.++
T Consensus 66 l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~L 145 (167)
T 3ffl_A 66 LVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAIL 145 (167)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC--------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHH
Confidence 344445555556666666555555443221100 012233444445788899999999999998
Q ss_pred HHHHHcC
Q 044770 405 EELKKAN 411 (464)
Q Consensus 405 ~~m~~~~ 411 (464)
+.+....
T Consensus 146 e~Ip~k~ 152 (167)
T 3ffl_A 146 DGIPSRQ 152 (167)
T ss_dssp HTSCGGG
T ss_pred hcCCchh
Confidence 8776543
No 241
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=91.68 E-value=14 Score=38.41 Aligned_cols=86 Identities=6% Similarity=-0.055 Sum_probs=57.7
Q ss_pred hhHHHHHHHhcCCCCcccHHHHHHHHHhCCCCCC----hhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCcHhHHHHH
Q 044770 131 LVFNRLIILNSSPGRRKTIPNILRQMKADKVAPH----VSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCIL 206 (464)
Q Consensus 131 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l 206 (464)
.-|..++..+-+.+.++.+.++-...++..-+.+ ...|..+.+++...|++++|...+-.+.....+ ......+
T Consensus 900 ~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~r--~~cLr~L 977 (1139)
T 4fhn_B 900 CYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPLK--KSCLLDF 977 (1139)
T ss_dssp HHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSSC--HHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHHH--HHHHHHH
Confidence 3467788888888888888877766665321111 125778888888999999998888877655333 3456667
Q ss_pred HHHHHhcChhhH
Q 044770 207 ATAHAVARLYTV 218 (464)
Q Consensus 207 i~~~~~~~~~~~ 218 (464)
+...+..|..+.
T Consensus 978 V~~lce~~~~~~ 989 (1139)
T 4fhn_B 978 VNQLTKQGKINQ 989 (1139)
T ss_dssp HHHHHHHCCHHH
T ss_pred HHHHHhCCChhh
Confidence 766666665443
No 242
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=91.46 E-value=0.77 Score=31.17 Aligned_cols=46 Identities=13% Similarity=0.053 Sum_probs=23.3
Q ss_pred HHHHHHHHHHhCCCCCcHhHHHHHHHHHHhcChhhHHHHHHHHHHh
Q 044770 183 GLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEK 228 (464)
Q Consensus 183 ~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 228 (464)
+..+-++.+....+.|++....+.+++|-+.+++..|.++++-++.
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~ 73 (109)
T 1v54_E 28 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKD 73 (109)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 3444444444444555555555555555555555555555554443
No 243
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=91.27 E-value=8.5 Score=35.05 Aligned_cols=100 Identities=13% Similarity=0.041 Sum_probs=69.9
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHh--CCCCcc---HHHHHHHHHHHHhcCChHHHHHHHHHhHHHHhhhhhcCCCCcH
Q 044770 307 YNSVISVYCKNGFIDKASGLLKEMSM--NGCKPN---AITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWL 381 (464)
Q Consensus 307 ~~~li~~~~~~~~~~~a~~~~~~m~~--~g~~p~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~p~~ 381 (464)
...|...|...|++.+|..++.++.. .|..+. ...+...++.|...+++..|..++..+.... ......|+.
T Consensus 140 ~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~---~~~~~~~~l 216 (445)
T 4b4t_P 140 TKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKT---FKNPKYESL 216 (445)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH---HHSSCCHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhh---cccCCcHHH
Confidence 34577778888999999999888764 232222 2356667788999999999999998873211 122233332
Q ss_pred --HHHHHHHHHHHhcCChhhHHHHHHHHHH
Q 044770 382 --ETTLSIIEIFAEKGDVGNAENLFEELKK 409 (464)
Q Consensus 382 --~~~~~li~~~~~~g~~~~A~~~~~~m~~ 409 (464)
..|...+..+...+++.+|.+.|.++.+
T Consensus 217 k~~~~~~~~~~~~~e~~y~~a~~~y~e~~~ 246 (445)
T 4b4t_P 217 KLEYYNLLVKISLHKREYLEVAQYLQEIYQ 246 (445)
T ss_dssp HHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 4467788888889999999888877754
No 244
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=91.06 E-value=1.4 Score=42.81 Aligned_cols=128 Identities=14% Similarity=0.117 Sum_probs=77.3
Q ss_pred HHHHHHHHHHhhCc-HHHHHHHHHHHHHcCCCCchhhHHHHHHHhcCCCC-cccHHHHHHHHHhC------CCCC-Ch--
Q 044770 97 LYNNLVIACLDKGV-IKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGR-RKTIPNILRQMKAD------KVAP-HV-- 165 (464)
Q Consensus 97 ~~~~li~~~~~~~~-~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~------~~~~-~~-- 165 (464)
.-..++..+...++ .+.|+.+|+++.......+......++..+...++ --+|.+++.+..+. ..++ +.
T Consensus 250 L~~~Ll~~~~~t~~~~~~a~~~le~L~~~~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~ 329 (754)
T 4gns_B 250 LMYSLKSFIAITPSLVDFTIDYLKGLTKKDPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADS 329 (754)
T ss_dssp HHHHHHHHHHTCGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHH
T ss_pred HHHHHHHHHcccccHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhccccccc
Confidence 34455555555666 57788899888876422222223334444433332 22344444444321 1111 11
Q ss_pred --------hhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCc-HhHHHHHHHHHHhcChhhHHHHHHHHH
Q 044770 166 --------STFHILMKIEANDHNIEGLMKVYSDMKRSEVEPN-EVSYCILATAHAVARLYTVAETYVEAL 226 (464)
Q Consensus 166 --------~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~li~~~~~~~~~~~a~~~~~~~ 226 (464)
...+.-.+.+...|+++-|+++-++.... .|+ -.+|..|..+|...|+++.|+-.+..+
T Consensus 330 ~~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~--aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 330 ARLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTEL--ALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred ccccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhc--CchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 11222244566789999999999888765 454 678999999999999999998888776
No 245
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=90.41 E-value=1.1 Score=43.53 Aligned_cols=125 Identities=10% Similarity=-0.057 Sum_probs=76.7
Q ss_pred HHHHHHHccCC-hhHHHHHHHHHHhCCCCCcHhHH--HHHHHHHHhcC-hhhHHHHHHHHHHhc------cCCC-Chh--
Q 044770 170 ILMKIEANDHN-IEGLMKVYSDMKRSEVEPNEVSY--CILATAHAVAR-LYTVAETYVEALEKS------MTGN-NWS-- 236 (464)
Q Consensus 170 ~l~~~~~~~~~-~~~a~~~~~~m~~~~~~p~~~~~--~~li~~~~~~~-~~~~a~~~~~~~~~~------~~~~-~~~-- 236 (464)
.++..+...++ .+.|..+|+++.+. .|...++ ..++..+.+.+ +--+|.+++.+..+. ..++ +..
T Consensus 253 ~Ll~~~~~t~~~~~~a~~~le~L~~~--~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~ 330 (754)
T 4gns_B 253 SLKSFIAITPSLVDFTIDYLKGLTKK--DPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSA 330 (754)
T ss_dssp HHHHHHHTCGGGHHHHHHHHHHHHHH--CGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHH
T ss_pred HHHHHHcccccHHHHHHHHHHHHHhh--CCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccccc
Confidence 44444444555 57788899988776 3433332 22333322222 223455555444321 1111 110
Q ss_pred --------hHHHHHHHHHhhcChhhHHHHHHHhccCCCCchhhHHHHHHHhhccCChHHHHHHHHHHH
Q 044770 237 --------TLDVLIILYGYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQ 296 (464)
Q Consensus 237 --------~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 296 (464)
....=...+...|+++.|.++-++.....+.+-.+|..|..+|...|+++.|+-.+..+.
T Consensus 331 ~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 331 RLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred cccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 111113445667889999999998888888888889999999999999999998888764
No 246
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=89.95 E-value=11 Score=34.25 Aligned_cols=153 Identities=12% Similarity=-0.004 Sum_probs=85.0
Q ss_pred HHHHHHhhccCChHHHHHHHHHHHhccccCC-----hhhHHHHHHHHHhcCChhHHHHHHHHHHh----CCCCccH--HH
Q 044770 273 VLAIEAFGRIAQVSRAEELWLEMQSVKQLKA-----TEQYNSVISVYCKNGFIDKASGLLKEMSM----NGCKPNA--IT 341 (464)
Q Consensus 273 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-----~~~~~~li~~~~~~~~~~~a~~~~~~m~~----~g~~p~~--~~ 341 (464)
..|...|...|++.+|.+++..+...-...+ ...+...+..|...+++..|..++..... ....|+. ..
T Consensus 141 ~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~ 220 (445)
T 4b4t_P 141 KDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEY 220 (445)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHH
Confidence 4567777788888888888887764221111 33566667778888888888888877642 2222322 33
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHhHHHHhhhhhcCCCCcH---HHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCcHHH
Q 044770 342 YRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWL---ETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFV 418 (464)
Q Consensus 342 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~p~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~ 418 (464)
+...+..+...+++.+|...|.++.+.... ...|.. ..+..++.... .+....-..++........-++...
T Consensus 221 ~~~~~~~~~~e~~y~~a~~~y~e~~~~~~~----~~d~~~~~~~L~~~v~~~iL-a~~~~~~~~ll~~~~~~~~~~~l~~ 295 (445)
T 4b4t_P 221 YNLLVKISLHKREYLEVAQYLQEIYQTDAI----KSDEAKWKPVLSHIVYFLVL-SPYGNLQNDLIHKIQNDNNLKKLES 295 (445)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHHHHHHH----HSCHHHHHHHHHHHHHHHHH-SSCSSTTHHHHHSHHHHSSCHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhcccc----cCCHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHhhcccccccHH
Confidence 455556667788888888888777543211 111111 11122222222 2222222333333333333356778
Q ss_pred HHHHHHHHHHcC
Q 044770 419 YNTLIKAYVKAK 430 (464)
Q Consensus 419 ~~~li~~~~~~g 430 (464)
|..++.+|....
T Consensus 296 ~~~L~k~f~~~~ 307 (445)
T 4b4t_P 296 QESLVKLFTTNE 307 (445)
T ss_dssp HHHHHHHHHHCC
T ss_pred HHHHHHHHHhch
Confidence 888888887653
No 247
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=89.68 E-value=1 Score=40.20 Aligned_cols=66 Identities=11% Similarity=0.113 Sum_probs=34.9
Q ss_pred HHHHhcCCCCcccHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHh-----CCCCCcHhH
Q 044770 136 LIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKR-----SEVEPNEVS 202 (464)
Q Consensus 136 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~-----~~~~p~~~~ 202 (464)
++..+...|+++++...+..+.... +.+...|..+|.++.+.|+..+|++.|+...+ .|+.|+..+
T Consensus 177 ~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l 247 (388)
T 2ff4_A 177 KAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 247 (388)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHH
Confidence 3444445555555555555554432 44555555566666666666666655555432 355555544
No 248
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=89.38 E-value=2.1 Score=38.27 Aligned_cols=74 Identities=8% Similarity=0.004 Sum_probs=53.7
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCccHHHHHHHHHHHHhcCChHHHHHHHHHhHHHHhhhhhcCCCCcHHH
Q 044770 307 YNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLET 383 (464)
Q Consensus 307 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~p~~~~ 383 (464)
...++..+...|++++++..+..+... -+.+...+..+|.++.+.|+..+|.+.|+...+... ...|+.|...+
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~-~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~--~eLG~~P~~~l 247 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFE-HPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLA--DDLGIDPGPTL 247 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHH--HHHSCCCCHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH--HHhCCCCCHHH
Confidence 445666777788888888888777764 233677888888888888888888888887755332 45688887665
No 249
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=89.08 E-value=24 Score=36.79 Aligned_cols=81 Identities=11% Similarity=-0.047 Sum_probs=39.5
Q ss_pred HHHHHHHHHccCChhHHHHHHHHHHhCCC--CCc--HhHHHHHHHHHHhcChhhHHHHHHHHHHhccCCCChhhHHHHHH
Q 044770 168 FHILMKIEANDHNIEGLMKVYSDMKRSEV--EPN--EVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLII 243 (464)
Q Consensus 168 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~--~p~--~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 243 (464)
|..++..+-+.+.++.+.++-....+... .++ ...|..+.+++...|++++|...+-.+.....+ ......++.
T Consensus 902 Y~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~r--~~cLr~LV~ 979 (1139)
T 4fhn_B 902 YLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPLK--KSCLLDFVN 979 (1139)
T ss_dssp HHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSSC--HHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHHH--HHHHHHHHH
Confidence 45555666666666666655544433211 111 113555666666666666666665555433221 233444444
Q ss_pred HHHhhcC
Q 044770 244 LYGYLAK 250 (464)
Q Consensus 244 ~~~~~~~ 250 (464)
.++..+.
T Consensus 980 ~lce~~~ 986 (1139)
T 4fhn_B 980 QLTKQGK 986 (1139)
T ss_dssp HHHHHCC
T ss_pred HHHhCCC
Confidence 4444443
No 250
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=88.63 E-value=3 Score=31.56 Aligned_cols=63 Identities=5% Similarity=0.058 Sum_probs=46.1
Q ss_pred hhchHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCCc-------hhHHHHHHHHHhhcChHHHHHHhhhc
Q 044770 26 RGEIFHSINRLRKLQLNKRALEVMEWVIRERPYRPKE-------LDYSYLLEFTIKNHGISQGEKLFCCI 88 (464)
Q Consensus 26 ~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~~a~~~~~~~ 88 (464)
...+..-++.+...+.++.|+-+.+.+....+..|+. .++..+.+.+...|++..|...|++.
T Consensus 20 ~~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qA 89 (167)
T 3ffl_A 20 HMNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMA 89 (167)
T ss_dssp -CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 4467778888899999999998888866543334443 24566777888889998888888774
No 251
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=87.95 E-value=4.8 Score=27.42 Aligned_cols=64 Identities=14% Similarity=0.024 Sum_probs=49.0
Q ss_pred ChHHHHHHHHHhHHHHhhhhhcCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCcHHHHHHHHHH
Q 044770 354 LVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKA 425 (464)
Q Consensus 354 ~~~~a~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~ 425 (464)
+.-+..+-++.+ ....+.|++.+..+.+++|-+.+++.-|.++|+..+.+- .+...+|..+++-
T Consensus 25 D~~e~rrglN~l-------~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~-~~~~~iY~~~lqE 88 (109)
T 1v54_E 25 DAWELRKGMNTL-------VGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVIQE 88 (109)
T ss_dssp CHHHHHHHHHHH-------TTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHHHH
T ss_pred cHHHHHHHHHHH-------hccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh-cCchhhHHHHHHH
Confidence 555666777777 677889999999999999999999999999999888542 2334467666653
No 252
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=87.40 E-value=13 Score=31.78 Aligned_cols=117 Identities=14% Similarity=-0.055 Sum_probs=74.4
Q ss_pred HHHHHHHhhccCChHHHHHHHHHHHhccccCChhhHHHHHHHHHhcCChhHHHH----HHHHHHhCCCCccHHHHHHHHH
Q 044770 272 YVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASG----LLKEMSMNGCKPNAITYRHLAL 347 (464)
Q Consensus 272 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~----~~~~m~~~g~~p~~~~~~~ll~ 347 (464)
|.++..-|.+.+++++|.+++..-.. .+.+.|+...|-+ +++-..+.++.++......++.
T Consensus 36 ~Rtl~~Ry~~~~~~~eAidlL~~ga~---------------~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~ 100 (312)
T 2wpv_A 36 LRTIANRYVRSKSYEHAIELISQGAL---------------SFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVR 100 (312)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH---------------HHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHH---------------HHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 44666667777888888877654332 2344566555544 3455556778888888888887
Q ss_pred HHHhcCCh-HHHHHHHHHhHHHHhhhhhcCCCCcHHHHHHHHHHHHhcCChhhHHHHH
Q 044770 348 GCFKSNLV-EEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLF 404 (464)
Q Consensus 348 ~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 404 (464)
.+..-..- ..=.++.+.+++-..... ....-+......+...|.+.|++.+|..-|
T Consensus 101 l~~~~p~~~~~r~~fi~~ai~WS~~~g-~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~ 157 (312)
T 2wpv_A 101 LIAELDPSEPNLKDVITGMNNWSIKFS-EYKFGDPYLHNTIGSKLLEGDFVYEAERYF 157 (312)
T ss_dssp HHTTCCTTCTTHHHHHHHHHHHHHHTS-SCTTCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHCCCCCchHHHHHHHHHHHHhhcC-CCCCCCHHHHHHHHHHHhhcCCHHHHHHHH
Confidence 76553321 123556666665543211 112346777789999999999999988755
No 253
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=86.76 E-value=10 Score=31.49 Aligned_cols=52 Identities=8% Similarity=-0.183 Sum_probs=27.0
Q ss_pred HHHHHHhhcchHHHHHHHHHHHHcCCCCCCch---hHHHHHHHHHhhcChHHHHHHhhhc
Q 044770 32 SINRLRKLQLNKRALEVMEWVIRERPYRPKEL---DYSYLLEFTIKNHGISQGEKLFCCI 88 (464)
Q Consensus 32 ~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~g~~~~a~~~~~~~ 88 (464)
.+...++.|+++....+++ .|..++.. .-.+.+...+..|+.+-+..+++.-
T Consensus 8 ~L~~A~~~g~~~~v~~Ll~-----~g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g 62 (285)
T 1wdy_A 8 LLIKAVQNEDVDLVQQLLE-----GGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHG 62 (285)
T ss_dssp HHHHHHHTTCHHHHHHHHH-----TTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred HHHHHHHcCCHHHHHHHHH-----cCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcC
Confidence 4455566677655444443 22222221 1234455566677777666666653
No 254
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=86.16 E-value=18 Score=32.17 Aligned_cols=26 Identities=4% Similarity=-0.017 Sum_probs=18.2
Q ss_pred hHHHHHHHHHccCChhHHHHHHHHHH
Q 044770 167 TFHILMKIEANDHNIEGLMKVYSDMK 192 (464)
Q Consensus 167 ~~~~l~~~~~~~~~~~~a~~~~~~m~ 192 (464)
....|...|.+.|+.++..+++....
T Consensus 21 ~~~~l~~~~~~~~~~~~~~~~~~~~~ 46 (394)
T 3txn_A 21 GILQQGELYKQEGKAKELADLIKVTR 46 (394)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 44566777777888777777776654
No 255
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=85.65 E-value=9.7 Score=34.46 Aligned_cols=59 Identities=10% Similarity=-0.045 Sum_probs=27.5
Q ss_pred HHHHHHHhhccCChHHHHHHHHHHHhccccC--ChhhHHHHHHHHHhcCChhHHHHHHHHH
Q 044770 272 YVLAIEAFGRIAQVSRAEELWLEMQSVKQLK--ATEQYNSVISVYCKNGFIDKASGLLKEM 330 (464)
Q Consensus 272 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~li~~~~~~~~~~~a~~~~~~m 330 (464)
...+...|.+.|+++.|.+.|.++......+ -...+-.++..+...+++..+...+.+.
T Consensus 134 ~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka 194 (429)
T 4b4t_R 134 WINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAV 194 (429)
T ss_dssp CHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 4445555555555555555555555422111 1223444444444455555555544443
No 256
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=85.32 E-value=12 Score=32.78 Aligned_cols=68 Identities=15% Similarity=0.115 Sum_probs=43.5
Q ss_pred HHHHHHHhhccCChHHHHHHHHHHHhccccCChhhHHHHHHHHHhcCC--hhHHHHHHHHHHhCCCCccHH
Q 044770 272 YVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGF--IDKASGLLKEMSMNGCKPNAI 340 (464)
Q Consensus 272 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~--~~~a~~~~~~m~~~g~~p~~~ 340 (464)
...++.-|...|+.++|.+.++++...... .......+..++-+.++ .+....++..+...|+-+...
T Consensus 220 i~~lL~EY~~s~D~~EA~~ci~EL~~p~fh-he~V~~av~~aLE~~~~~~re~~~~LL~~L~~~glls~~q 289 (358)
T 3eiq_C 220 IDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQ 289 (358)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCTTCH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHH
T ss_pred HHHHHHHhccCCCHHHHHHHHHHccCCcch-HHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCCCHHH
Confidence 567888888899999999999888752211 12334444455544332 345777888888777654433
No 257
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=84.47 E-value=9.6 Score=27.59 Aligned_cols=64 Identities=14% Similarity=0.024 Sum_probs=48.3
Q ss_pred ChHHHHHHHHHhHHHHhhhhhcCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCcHHHHHHHHHH
Q 044770 354 LVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKA 425 (464)
Q Consensus 354 ~~~~a~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~ 425 (464)
|.-+..+-++.+ ....+.|++.+..+-+++|-+.+++..|.++|+-.+.+- .+...+|..+++-
T Consensus 68 D~wElrrglN~l-------~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~-~~~~~iY~y~lqE 131 (152)
T 2y69_E 68 DAWELRKGMNTL-------VGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVIQE 131 (152)
T ss_dssp CHHHHHHHHHHH-------TTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHHHH
T ss_pred cHHHHHHHHHHH-------hccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc-CCchhhHHHHHHH
Confidence 444556666666 667889999999999999999999999999999888642 2344467666653
No 258
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=83.86 E-value=10 Score=27.45 Aligned_cols=58 Identities=14% Similarity=0.091 Sum_probs=32.5
Q ss_pred HHHHHHHHHhCCCCCcHhHHHHHHHHHHhcChhhHHHHHHHHHHhccCCCChhhHHHHH
Q 044770 184 LMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLI 242 (464)
Q Consensus 184 a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 242 (464)
..+-++.+....+.|++......+++|-+.+++..|.++|+-++.+ ..+....|..++
T Consensus 72 lrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K-~~~~~~iY~y~l 129 (152)
T 2y69_E 72 LRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVI 129 (152)
T ss_dssp HHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHH
T ss_pred HHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-cCCchhhHHHHH
Confidence 4444455555556666666666666666666666666666665544 223333444443
No 259
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=82.60 E-value=22 Score=30.35 Aligned_cols=148 Identities=7% Similarity=0.004 Sum_probs=88.8
Q ss_pred HHHHHhhcchHHHHHHHHHHHHcCCCCCCchhHHHHHHHHHhhcChHHHHHHhhhcCCCCCchhHHHHHHHHHHhhCcHH
Q 044770 33 INRLRKLQLNKRALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQGEKLFCCIPKDYQNELLYNNLVIACLDKGVIK 112 (464)
Q Consensus 33 l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 112 (464)
++.....|++=+|.+.++. +..-|.+.+++++|.+++..-. ..+.+.|+..
T Consensus 20 l~~~I~~G~yYEAhQ~~Rt----------------l~~Ry~~~~~~~eAidlL~~ga-------------~~ll~~~Q~~ 70 (312)
T 2wpv_A 20 FENKIKAGDYYEAHQTLRT----------------IANRYVRSKSYEHAIELISQGA-------------LSFLKAKQGG 70 (312)
T ss_dssp HHHHHHHTCHHHHHHHHHH----------------HHHHHHHTTCHHHHHHHHHHHH-------------HHHHHTTCHH
T ss_pred HHHHhhccChHHHHHHHHH----------------HHHHHHHhcCHHHHHHHHHHHH-------------HHHHHCCCcc
Confidence 3444455666555555543 3344666777887777765543 2345567765
Q ss_pred HHHH----HHHHHHHcCCCCchhhHHHHHHHhcCCCCcc-cHHHHHHHHHh----CCC--CCChhhHHHHHHHHHccCCh
Q 044770 113 LSLE----YMKKMRVLGHSISYLVFNRLIILNSSPGRRK-TIPNILRQMKA----DKV--APHVSTFHILMKIEANDHNI 181 (464)
Q Consensus 113 ~a~~----~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~-~a~~~~~~~~~----~~~--~~~~~~~~~l~~~~~~~~~~ 181 (464)
.|-+ +++.+.+.+.+++......++..+.....-+ .=.++++.+++ .|- .-+......+...|.+.+++
T Consensus 71 sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~ 150 (312)
T 2wpv_A 71 SGTDLIFYLLEVYDLAEVKVDDISVARLVRLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFV 150 (312)
T ss_dssp HHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCH
T ss_pred hHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCH
Confidence 5554 4566666788889888888888877644322 23444455443 221 23566777888888898988
Q ss_pred hHHHHHHHHHHhCCCCCcHhHHHHHHHHHHhc
Q 044770 182 EGLMKVYSDMKRSEVEPNEVSYCILATAHAVA 213 (464)
Q Consensus 182 ~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 213 (464)
.+|...|- .|-.-|...+..++.-+...
T Consensus 151 ~~A~~H~i----~~~~~s~~~~a~~l~~w~~~ 178 (312)
T 2wpv_A 151 YEAERYFM----LGTHDSMIKYVDLLWDWLCQ 178 (312)
T ss_dssp HHHHHHHH----TSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH----hCCCccHHHHHHHHHHHHHh
Confidence 88887664 11111455666555555544
No 260
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=80.99 E-value=13 Score=26.88 Aligned_cols=52 Identities=10% Similarity=-0.011 Sum_probs=32.1
Q ss_pred hHHHHHHHHHHHhccccCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcc
Q 044770 285 VSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPN 338 (464)
Q Consensus 285 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~ 338 (464)
..++..+++.+.+.+..-....+--+.-++.+.|++++|.+..+.+.+ +.|+
T Consensus 59 ~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~--~eP~ 110 (134)
T 3o48_A 59 ERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE--HERN 110 (134)
T ss_dssp HHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT--TCTT
T ss_pred HHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh--hCCC
Confidence 345666666666544222344555566677777777777777777776 4554
No 261
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=80.29 E-value=11 Score=31.39 Aligned_cols=47 Identities=9% Similarity=-0.035 Sum_probs=21.5
Q ss_pred cCChhHHHHHHHHHHhCCCCccHHH--HHHHHHHHHhcCChHHHHHHHH
Q 044770 317 NGFIDKASGLLKEMSMNGCKPNAIT--YRHLALGCFKSNLVEEGFKALE 363 (464)
Q Consensus 317 ~~~~~~a~~~~~~m~~~g~~p~~~~--~~~ll~~~~~~~~~~~a~~~~~ 363 (464)
.+......++++.+.+.|..++... -.+.+...+..|..+-+..+++
T Consensus 192 ~~~~~~~~~i~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~ 240 (285)
T 1wdy_A 192 SSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLE 240 (285)
T ss_dssp CSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred ccccchHHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHh
Confidence 3444444455555555554443211 1122333444566655555555
No 262
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=79.10 E-value=16 Score=26.47 Aligned_cols=68 Identities=9% Similarity=0.033 Sum_probs=50.8
Q ss_pred cccCChhhHHHHHHHHHhcCCh---hHHHHHHHHHHhCCCCccHHHHHHHHHHHHhcCChHHHHHHHHHhH
Q 044770 299 KQLKATEQYNSVISVYCKNGFI---DKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGM 366 (464)
Q Consensus 299 ~~~~~~~~~~~li~~~~~~~~~---~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 366 (464)
+..|++.+--....++++.... .+++.++.++.+.+..-....+-.+.-++.+.|++++|.++.+.++
T Consensus 35 ~~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL 105 (134)
T 3o48_A 35 GPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLF 105 (134)
T ss_dssp GGGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred CCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 4556766766677788877654 5688899998876522234566677778999999999999999984
No 263
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=78.94 E-value=31 Score=29.75 Aligned_cols=132 Identities=8% Similarity=-0.003 Sum_probs=81.8
Q ss_pred HHHHHHHhhcChHHHHHHhhhcCCCCCchhHHHHHHHHHHhhCcHHHHHHH----HHHHHHcCCCCchhhHHHHHHHhcC
Q 044770 67 YLLEFTIKNHGISQGEKLFCCIPKDYQNELLYNNLVIACLDKGVIKLSLEY----MKKMRVLGHSISYLVFNRLIILNSS 142 (464)
Q Consensus 67 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~----~~~m~~~~~~~~~~~~~~l~~~~~~ 142 (464)
++..-|.+.+++++|.+++-.-. ..+.+.|+...|-++ ++-+.+.++++|......++..+..
T Consensus 40 Ti~~Ry~~~k~y~eAidLL~~GA-------------~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~~ 106 (336)
T 3lpz_A 40 LVAARYSKQGNWAAAVDILASVS-------------QTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLRL 106 (336)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHH-------------HHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTT
T ss_pred HHHHHHHhhcCHHHHHHHHHHHH-------------HHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Confidence 33444667788888887765432 234556666554444 4666678888998888888888877
Q ss_pred CCCcc-cHHHHHHHHHh----CC--CCCChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCcHhHHHHHHHHHHhcCh
Q 044770 143 PGRRK-TIPNILRQMKA----DK--VAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARL 215 (464)
Q Consensus 143 ~~~~~-~a~~~~~~~~~----~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~ 215 (464)
...-+ .=..+.+.+++ .| -.-|......+...|.+.+++.+|...|= .|-.++...|..++.-+...+.
T Consensus 107 ~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i----lg~~~s~~~~a~mL~ew~~~~~ 182 (336)
T 3lpz_A 107 FQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLV----LGTKESPEVLARMEYEWYKQDE 182 (336)
T ss_dssp SCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHT----TSCTTHHHHHHHHHHHHHHTSC
T ss_pred CCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH----hcCCchHHHHHHHHHHHHHhcC
Confidence 65432 12233344332 22 23455666778889999999999888772 2334444677666655555443
No 264
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=78.79 E-value=13 Score=25.23 Aligned_cols=88 Identities=11% Similarity=0.012 Sum_probs=65.5
Q ss_pred hhcchHHHHHHHHHHHHcCCCCCCchhHHHHH--HHHHhhcChHHHHHHhhhcCCCCCchhHHHHHHHHHHhhCcHHHHH
Q 044770 38 KLQLNKRALEVMEWVIRERPYRPKELDYSYLL--EFTIKNHGISQGEKLFCCIPKDYQNELLYNNLVIACLDKGVIKLSL 115 (464)
Q Consensus 38 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~--~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~ 115 (464)
-....++|..+-+|+... ++ .-...|| ..+...|++++|..+.+...- ||...|-+|.. .+.|-.+++.
T Consensus 18 G~H~HqEA~tIAdwL~~~----~~-~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~--pdlepw~ALce--~rlGl~s~le 88 (115)
T 2uwj_G 18 GQHCHEEALCIAEWLERL----GQ-DEAARLIRISSLANQGRYQEALAFAHGNPW--PALEPWFALCE--WHLGLGAALD 88 (115)
T ss_dssp TTTCHHHHHHHHHHHHHT----TC-HHHHHHHHHHHHHHTTCHHHHHGGGTTCCC--GGGHHHHHHHH--HHTTCHHHHH
T ss_pred cchHHHHHHHHHHHHHhC----Cc-HHHHHHHHHHHHHcchhHHHHHHhcCCCCC--chHHHHHHHHH--HhcccHHHHH
Confidence 456778999999999873 23 3334444 467799999999999999884 99999988765 4778888888
Q ss_pred HHHHHHHHcCCCCchhhHHH
Q 044770 116 EYMKKMRVLGHSISYLVFNR 135 (464)
Q Consensus 116 ~~~~~m~~~~~~~~~~~~~~ 135 (464)
..+..+...| .|....|..
T Consensus 89 ~rL~~la~sg-~p~~q~Fa~ 107 (115)
T 2uwj_G 89 RRLAGLGGSS-DPALADFAA 107 (115)
T ss_dssp HHHHHHHTCS-SHHHHHHHH
T ss_pred HHHHHHHhCC-CHHHHHHHH
Confidence 8888888776 444444443
No 265
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=78.75 E-value=31 Score=29.71 Aligned_cols=117 Identities=10% Similarity=0.036 Sum_probs=71.8
Q ss_pred HHHHHHHhhccCChHHHHHHHHHHHhccccCChhhHHHHHHHHHhcCChhHHHHH----HHHHHhCCCCccHHHHHHHHH
Q 044770 272 YVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGL----LKEMSMNGCKPNAITYRHLAL 347 (464)
Q Consensus 272 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~----~~~m~~~g~~p~~~~~~~ll~ 347 (464)
|.++..-|.+.+++++|.+++..-.. .+.+.|+...|-++ ++-..+.++++|......++.
T Consensus 38 ~RTi~~Ry~~~k~y~eAidLL~~GA~---------------~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~ 102 (336)
T 3lpz_A 38 TRLVAARYSKQGNWAAAVDILASVSQ---------------TLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLG 102 (336)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH---------------HHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHH
T ss_pred HHHHHHHHHhhcCHHHHHHHHHHHHH---------------HHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 44556667778888888877654332 23444555444443 355556677888877777777
Q ss_pred HHHhcCChH-HHHHHHHHhHHHHhhhhhcCCCCcHHHHHHHHHHHHhcCChhhHHHHH
Q 044770 348 GCFKSNLVE-EGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLF 404 (464)
Q Consensus 348 ~~~~~~~~~-~a~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 404 (464)
.+.....-+ .=..+.+.+++-... ....-.-+......+...|.+.|++.+|..-|
T Consensus 103 L~~~~~~~~p~r~~fi~~ai~WS~~-~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ 159 (336)
T 3lpz_A 103 CLRLFQPGEPVRKRFVKEMIDWSKK-FGDYPAGDPELHHVVGTLYVEEGEFEAAEKHL 159 (336)
T ss_dssp HHTTSCTTCHHHHHHHHHHHHHHHH-HSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHhCCCCCcHHHHHHHHHHHHHhh-cCCCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Confidence 766554311 224566666655432 11223346667778889999999988887665
No 266
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=78.41 E-value=5.1 Score=33.14 Aligned_cols=53 Identities=11% Similarity=0.064 Sum_probs=30.3
Q ss_pred hcCCCCcccHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHh
Q 044770 140 NSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKR 193 (464)
Q Consensus 140 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 193 (464)
..+.|+++++++....-++.. +-|...-..++..+|-.|++++|.+-++...+
T Consensus 7 ll~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~ 59 (273)
T 1zbp_A 7 ALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIK 59 (273)
T ss_dssp HTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 345555666665555555543 44555555566666666666666666555544
No 267
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=78.24 E-value=13 Score=25.18 Aligned_cols=87 Identities=8% Similarity=-0.005 Sum_probs=64.4
Q ss_pred hhcchHHHHHHHHHHHHcCCCCCCchhHHHHH--HHHHhhcChHHHHHHhhhcCCCCCchhHHHHHHHHHHhhCcHHHHH
Q 044770 38 KLQLNKRALEVMEWVIRERPYRPKELDYSYLL--EFTIKNHGISQGEKLFCCIPKDYQNELLYNNLVIACLDKGVIKLSL 115 (464)
Q Consensus 38 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~--~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~ 115 (464)
-....++|..+-+|+... ++ .-...|| ..+...|++++|..+.+...- ||...|-+|.. .+.|-.+++.
T Consensus 19 G~H~HqEA~tIAdwL~~~----~~-~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~--pdlepw~ALce--~rlGl~s~le 89 (116)
T 2p58_C 19 GNHYHEEANCIAEWLHLK----GE-EEAVQLIRLSSLMNRGDYASALQQGNKLAY--PDLEPWLALCE--YRLGLGSALE 89 (116)
T ss_dssp TTTCHHHHHHHHHHHHHT----TC-HHHHHHHHHHHHHHTTCHHHHHHHHTTSCC--GGGHHHHHHHH--HHHTCHHHHH
T ss_pred cchHHHHHHHHHHHHHhC----Cc-HHHHHHHHHHHHHcchhHHHHHHhcCCCCC--chHHHHHHHHH--HhcccHHHHH
Confidence 456778999999999873 23 3334444 467789999999999999884 99999988765 4678888888
Q ss_pred HHHHHHHHcCCCCchhhHH
Q 044770 116 EYMKKMRVLGHSISYLVFN 134 (464)
Q Consensus 116 ~~~~~m~~~~~~~~~~~~~ 134 (464)
..+..+...| .|....|.
T Consensus 90 ~rL~~la~sg-~p~~q~Fa 107 (116)
T 2p58_C 90 SRLNRLARSQ-DPRIQTFV 107 (116)
T ss_dssp HHHHHHTTCC-CHHHHHHH
T ss_pred HHHHHHHhCC-CHHHHHHH
Confidence 8887887776 44444443
No 268
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=77.51 E-value=31 Score=31.14 Aligned_cols=60 Identities=10% Similarity=-0.063 Sum_probs=35.9
Q ss_pred HHHHHHHHHHhcChhhHHHHHHHHHHhccCCCC--hhhHHHHHHHHHhhcChhhHHHHHHHh
Q 044770 202 SYCILATAHAVARLYTVAETYVEALEKSMTGNN--WSTLDVLIILYGYLAKGKDLERIWATV 261 (464)
Q Consensus 202 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~ 261 (464)
++..+...|.+.|+++.|.+.+.++...-..+. ...+..+++.+...+++..+...+..+
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka 194 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAV 194 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 556677777777888888777777766533322 234444455555555555555555544
No 269
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=77.05 E-value=45 Score=32.03 Aligned_cols=81 Identities=11% Similarity=0.085 Sum_probs=41.1
Q ss_pred HHHHHHhcChhhHHHHHHHHHHhccCCCChhhHHHHHHHHHhhcChhhHHHHHHHhccCCCCchhhHHHHHHHhhc---c
Q 044770 206 LATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGR---I 282 (464)
Q Consensus 206 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~---~ 282 (464)
....+.-.|+++.|+.++-.. ...+...+...+..++-.+- ...++.. .+.....-+..||..|.+ .
T Consensus 300 Yf~vLlLtgqFE~AI~~L~~~----~~vdAVH~AIaL~~~gLL~~---~~~lls~---~~~~~~lN~arLI~~Yt~~F~~ 369 (661)
T 2qx5_A 300 YLQTLLLSGLYGLAIDYTYTF----SEMDAVHLAIGLASLKLFKI---DSSTRLT---KKPKRDIRFANILANYTKSFRY 369 (661)
T ss_dssp HHHHHHHTTCHHHHHHHHHTT----CHHHHHHHHHHHHHTTC-----------------------CHHHHHHHHHTTTTT
T ss_pred HHHHHHHHhhHHHHHHHHHhc----CchhHHHHHHHHHHcCCccC---CCccccc---CCCcccccHHHHHHHHHHHhhc
Confidence 445556678999998887644 23344444444444333322 1111110 111223347778888765 6
Q ss_pred CChHHHHHHHHHHH
Q 044770 283 AQVSRAEELWLEMQ 296 (464)
Q Consensus 283 g~~~~a~~~~~~~~ 296 (464)
.++..|.+.|--+.
T Consensus 370 td~~~Al~Y~~li~ 383 (661)
T 2qx5_A 370 SDPRVAVEYLVLIT 383 (661)
T ss_dssp TCHHHHHHHHHGGG
T ss_pred CCHHHHHHHHHHHh
Confidence 78888888877663
No 270
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=75.96 E-value=18 Score=30.27 Aligned_cols=51 Identities=6% Similarity=-0.114 Sum_probs=22.8
Q ss_pred HHHHHHhhcchHHHHHHHHHHHHcCCCCCCchhHHHHHHHHHhhcChHHHHHHhhh
Q 044770 32 SINRLRKLQLNKRALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQGEKLFCC 87 (464)
Q Consensus 32 ~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 87 (464)
.+...+..|+.+.+..+++. |..++...-.+.+...+..|+.+-+..+++.
T Consensus 34 ~L~~A~~~g~~~~v~~Ll~~-----g~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ 84 (285)
T 3kea_A 34 ASYYAIADNNVRLVCTLLNA-----GALKNLLENEFPLHQAATLEDTKIVKILLFS 84 (285)
T ss_dssp HHHHHHHTTCHHHHHHHHHT-----TGGGSCCTTCCHHHHHTTSSSCHHHHHHHHT
T ss_pred HHHHHHHcCCHHHHHHHHhC-----CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHC
Confidence 34444455555444433332 2222222223344445555666655555554
No 271
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=74.98 E-value=36 Score=28.45 Aligned_cols=14 Identities=14% Similarity=-0.116 Sum_probs=6.0
Q ss_pred cCChHHHHHHHHHh
Q 044770 352 SNLVEEGFKALELG 365 (464)
Q Consensus 352 ~~~~~~a~~~~~~~ 365 (464)
.|+.+-+.-+++.-
T Consensus 231 ~~~~~iv~~Ll~~g 244 (285)
T 3kea_A 231 LDDAEIAKMIIEKH 244 (285)
T ss_dssp TTCHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHcC
Confidence 44444444444433
No 272
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=74.61 E-value=6.1 Score=30.90 Aligned_cols=16 Identities=19% Similarity=0.306 Sum_probs=9.6
Q ss_pred HHHHHHHHHhCCCCcc
Q 044770 323 ASGLLKEMSMNGCKPN 338 (464)
Q Consensus 323 a~~~~~~m~~~g~~p~ 338 (464)
-.++++.+.+.|..|+
T Consensus 157 ~~~~v~~Ll~~ga~~~ 172 (201)
T 3hra_A 157 YQDIVKLLMENGADQS 172 (201)
T ss_dssp HHHHHHHHHHTTCCTT
T ss_pred HHHHHHHHHHCCCCCC
Confidence 3556666666666554
No 273
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=74.49 E-value=23 Score=26.00 Aligned_cols=20 Identities=5% Similarity=-0.104 Sum_probs=8.9
Q ss_pred HhcCCCCcccHHHHHHHHHh
Q 044770 139 LNSSPGRRKTIPNILRQMKA 158 (464)
Q Consensus 139 ~~~~~~~~~~a~~~~~~~~~ 158 (464)
++.+.|+++.|.+..+.+++
T Consensus 86 g~ykl~~Y~~Ar~y~d~lL~ 105 (144)
T 1y8m_A 86 GCYKLGEYSMAKRYVDTLFE 105 (144)
T ss_dssp HHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHhhhHHHHHHHHHHHHh
Confidence 34444444444444444443
No 274
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=72.81 E-value=29 Score=31.14 Aligned_cols=203 Identities=7% Similarity=-0.015 Sum_probs=89.9
Q ss_pred HHHHHHhhcchHHHHHHHHHHHHcCCCCCCch--hHHHHHHHHHhhcChHHHHHHhhhcCCC-CCchhHHHHHHHHHHhh
Q 044770 32 SINRLRKLQLNKRALEVMEWVIRERPYRPKEL--DYSYLLEFTIKNHGISQGEKLFCCIPKD-YQNELLYNNLVIACLDK 108 (464)
Q Consensus 32 ~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~li~~~~~~ 108 (464)
.+...+..|+.+-...++ + .|..++.. .....+...+..|+.+-+.-+++.-... ..+..-.+ .+...+..
T Consensus 17 ~L~~Aa~~g~~~~v~~Ll----~-~g~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t-~L~~A~~~ 90 (437)
T 1n11_A 17 PLHVASFMGHLPIVKNLL----Q-RGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQT-PLHCAARI 90 (437)
T ss_dssp HHHHHHHHTCHHHHHHHH----H-TTCCSCCSSSCCCCHHHHHHHHTCHHHHHHHHHHTCCSSCCCTTSCC-HHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHH----H-cCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCC-HHHHHHHC
Confidence 455566777776555444 3 33444322 2234556667788888777777764332 12222222 23334456
Q ss_pred CcHHHHHHHHHHHHHcCCCCchh---hHHHHHHHhcCCCCcccHHHHHHHHHhCCCCCC---hhhHHHHHHHHHccCChh
Q 044770 109 GVIKLSLEYMKKMRVLGHSISYL---VFNRLIILNSSPGRRKTIPNILRQMKADKVAPH---VSTFHILMKIEANDHNIE 182 (464)
Q Consensus 109 ~~~~~a~~~~~~m~~~~~~~~~~---~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~ 182 (464)
|+.+ +++.+.+.|..|+.. -.+. +...+..|+.+-+..+ .+.+..++ ..-+ +.+...+..|+.+
T Consensus 91 g~~~----~v~~Ll~~ga~~~~~~~~g~t~-L~~A~~~g~~~~v~~L----l~~~~~~~~~~~~g~-t~L~~A~~~g~~~ 160 (437)
T 1n11_A 91 GHTN----MVKLLLENNANPNLATTAGHTP-LHIAAREGHVETVLAL----LEKEASQACMTKKGF-TPLHVAAKYGKVR 160 (437)
T ss_dssp TCHH----HHHHHHHHTCCTTCCCTTCCCH-HHHHHHHTCHHHHHHH----HHTTCCSCCCCTTSC-CHHHHHHHTTCHH
T ss_pred CCHH----HHHHHHhCCCCCCCCCCCCCcH-HHHHHHcCCHHHHHHH----HhCCCCCcCCCCCCC-CHHHHHHHcCCHH
Confidence 6654 334444555544321 1222 2233344554433333 33332222 1111 2334445566655
Q ss_pred HHHHHHHHHHhCCCCCcHh---HHHHHHHHHHhcChhhHHHHHHHHHHhccCCCChhh--HHHHHHHHHhhcChhhHHHH
Q 044770 183 GLMKVYSDMKRSEVEPNEV---SYCILATAHAVARLYTVAETYVEALEKSMTGNNWST--LDVLIILYGYLAKGKDLERI 257 (464)
Q Consensus 183 ~a~~~~~~m~~~~~~p~~~---~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~a~~~ 257 (464)
-+ +.+.+.|..++.. ..+. +...+..|+.+ +++.+.+.|..++... -.+.+...+..|+.+-+..+
T Consensus 161 ~v----~~Ll~~g~~~~~~~~~g~t~-L~~A~~~~~~~----~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~L 231 (437)
T 1n11_A 161 VA----ELLLERDAHPNAAGKNGLTP-LHVAVHHNNLD----IVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSL 231 (437)
T ss_dssp HH----HHHHHTTCCTTCCCSSCCCH-HHHHHHTTCHH----HHHHHGGGTCCSCCCCTTCCCHHHHHHHTTCHHHHHHH
T ss_pred HH----HHHHhCCCCCCCCCCCCCCH-HHHHHHcCCHH----HHHHHHhCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHH
Confidence 33 3444445444321 1222 23334455543 3444445554443211 11223344455665555555
Q ss_pred HH
Q 044770 258 WA 259 (464)
Q Consensus 258 ~~ 259 (464)
++
T Consensus 232 l~ 233 (437)
T 1n11_A 232 LQ 233 (437)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 275
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=70.93 E-value=21 Score=24.25 Aligned_cols=84 Identities=11% Similarity=0.073 Sum_probs=48.4
Q ss_pred hhhHHHHHHHhccCCCCchhhHHHHHHHhhccCChHHHHHHHHHHHhccccCChhhHHHHHHHHHhcCChhHHHHHHHHH
Q 044770 251 GKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEM 330 (464)
Q Consensus 251 ~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m 330 (464)
.++|..+-+.+...+. ...+-..-+..+...|++++|..+.+... .||...|-++- -.+.|..+++...+.++
T Consensus 22 HqEA~tIAdwL~~~~~-~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c----~pdlepw~ALc--e~rlGl~s~le~rL~~l 94 (115)
T 2uwj_G 22 HEEALCIAEWLERLGQ-DEAARLIRISSLANQGRYQEALAFAHGNP----WPALEPWFALC--EWHLGLGAALDRRLAGL 94 (115)
T ss_dssp HHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHTTCHHHHHGGGTTCC----CGGGHHHHHHH--HHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCc-HHHHHHHHHHHHHcchhHHHHHHhcCCCC----CchHHHHHHHH--HHhcccHHHHHHHHHHH
Confidence 3444444444444333 22222223445667888888887765544 47877776653 35677777777777777
Q ss_pred HhCCCCccHHHH
Q 044770 331 SMNGCKPNAITY 342 (464)
Q Consensus 331 ~~~g~~p~~~~~ 342 (464)
..+| .|....|
T Consensus 95 a~sg-~p~~q~F 105 (115)
T 2uwj_G 95 GGSS-DPALADF 105 (115)
T ss_dssp HTCS-SHHHHHH
T ss_pred HhCC-CHHHHHH
Confidence 7665 3444433
No 276
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=70.81 E-value=22 Score=24.17 Aligned_cols=84 Identities=8% Similarity=0.080 Sum_probs=49.7
Q ss_pred hhhHHHHHHHhccCCCCchhhHHHHHHHhhccCChHHHHHHHHHHHhccccCChhhHHHHHHHHHhcCChhHHHHHHHHH
Q 044770 251 GKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEM 330 (464)
Q Consensus 251 ~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m 330 (464)
.++|..+-+.+...+. ...+-..-+..+...|++++|..+.+... .||...|-++-. .+.|..+++...+.++
T Consensus 23 HqEA~tIAdwL~~~~~-~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c----~pdlepw~ALce--~rlGl~s~le~rL~~l 95 (116)
T 2p58_C 23 HEEANCIAEWLHLKGE-EEAVQLIRLSSLMNRGDYASALQQGNKLA----YPDLEPWLALCE--YRLGLGSALESRLNRL 95 (116)
T ss_dssp HHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHTTCHHHHHHHHTTSC----CGGGHHHHHHHH--HHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCc-HHHHHHHHHHHHHcchhHHHHHHhcCCCC----CchHHHHHHHHH--HhcccHHHHHHHHHHH
Confidence 3444444444444333 22222233445667888888888776554 478877766643 5677777887777777
Q ss_pred HhCCCCccHHHH
Q 044770 331 SMNGCKPNAITY 342 (464)
Q Consensus 331 ~~~g~~p~~~~~ 342 (464)
..+| .|....|
T Consensus 96 a~sg-~p~~q~F 106 (116)
T 2p58_C 96 ARSQ-DPRIQTF 106 (116)
T ss_dssp TTCC-CHHHHHH
T ss_pred HhCC-CHHHHHH
Confidence 7765 3444444
No 277
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=70.69 E-value=18 Score=26.10 Aligned_cols=63 Identities=21% Similarity=0.326 Sum_probs=33.8
Q ss_pred HHHHHHHHhhcChHHHHHHhhhcCCC-CCchhHHHHHHHHHHhhC--cHHHHHHHHHHHHHcCCCC
Q 044770 66 SYLLEFTIKNHGISQGEKLFCCIPKD-YQNELLYNNLVIACLDKG--VIKLSLEYMKKMRVLGHSI 128 (464)
Q Consensus 66 ~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~li~~~~~~~--~~~~a~~~~~~m~~~~~~~ 128 (464)
..++.-|...|+.++|.+.++++... .....+...+..++-+.+ ..+....++..+...|+-+
T Consensus 11 ~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is 76 (129)
T 2nsz_A 11 DMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTIT 76 (129)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSC
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhCCCccHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcC
Confidence 45566666667777777777776542 112233444444444433 2345566666666555443
No 278
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=68.69 E-value=41 Score=26.43 Aligned_cols=53 Identities=9% Similarity=-0.074 Sum_probs=31.3
Q ss_pred hHHHHHHHHHhHHHHhhhhhcCCCC-cHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCC
Q 044770 355 VEEGFKALELGMKLITTKKVRSSTP-WLETTLSIIEIFAEKGDVGNAENLFEELKKANYTK 414 (464)
Q Consensus 355 ~~~a~~~~~~~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p 414 (464)
..++.++|..| ...++-- ....|......+...|++.+|..+|+.-.+.+-.|
T Consensus 95 ~~~p~~if~~L-------~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P 148 (202)
T 3esl_A 95 FHESENTFKYM-------FNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRP 148 (202)
T ss_dssp HHHHHHHHHHH-------HHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred cCCHHHHHHHH-------HHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 45666666666 3333332 34445666666666677777777766666665555
No 279
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=68.57 E-value=66 Score=28.79 Aligned_cols=190 Identities=9% Similarity=0.049 Sum_probs=85.8
Q ss_pred chhhHHHHhhcCccChhc--hHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCCc--hhHHHHHHHHHhhcChHHHHHHhh
Q 044770 11 GSAFQSWMREGFPVHRGE--IFHSINRLRKLQLNKRALEVMEWVIRERPYRPKE--LDYSYLLEFTIKNHGISQGEKLFC 86 (464)
Q Consensus 11 ~~~l~~~~~~g~~~~~~~--~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~a~~~~~ 86 (464)
.++++.+.+.|..++... ....+...+..|+.+-+..+++. |..++. ..-.+.+...+..|+.+-+.-+++
T Consensus 27 ~~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~-----g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~ 101 (437)
T 1n11_A 27 LPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQN-----KAKVNAKAKDDQTPLHCAARIGHTNMVKLLLE 101 (437)
T ss_dssp HHHHHHHHHTTCCSCCSSSCCCCHHHHHHHHTCHHHHHHHHHH-----TCCSSCCCTTSCCHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhC-----CCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHh
Confidence 356666777776665432 22355556666776555444432 222221 122344555667777777777776
Q ss_pred hcCCC-CCchhHHHHHHHHHHhhCcHHHHHHHHHHHHHcCCCCc---hhhHHHHHHHhcCCCCcccHHHHHHHHHhCCCC
Q 044770 87 CIPKD-YQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSIS---YLVFNRLIILNSSPGRRKTIPNILRQMKADKVA 162 (464)
Q Consensus 87 ~~~~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 162 (464)
.-... ..+..-++. +...+..|+.+-+..++ +.+..++ ..-++.+ ...+..|+. ++++.+.+.|..
T Consensus 102 ~ga~~~~~~~~g~t~-L~~A~~~g~~~~v~~Ll----~~~~~~~~~~~~g~t~L-~~A~~~g~~----~~v~~Ll~~g~~ 171 (437)
T 1n11_A 102 NNANPNLATTAGHTP-LHIAAREGHVETVLALL----EKEASQACMTKKGFTPL-HVAAKYGKV----RVAELLLERDAH 171 (437)
T ss_dssp HTCCTTCCCTTCCCH-HHHHHHHTCHHHHHHHH----HTTCCSCCCCTTSCCHH-HHHHHTTCH----HHHHHHHHTTCC
T ss_pred CCCCCCCCCCCCCcH-HHHHHHcCCHHHHHHHH----hCCCCCcCCCCCCCCHH-HHHHHcCCH----HHHHHHHhCCCC
Confidence 54332 122222222 33344566665544444 3333222 1222222 233344543 344445555544
Q ss_pred CChhh--HHHHHHHHHccCChhHHHHHHHHHHhCCCCCcHh---HHHHHHHHHHhcChhhHHH
Q 044770 163 PHVST--FHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEV---SYCILATAHAVARLYTVAE 220 (464)
Q Consensus 163 ~~~~~--~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~---~~~~li~~~~~~~~~~~a~ 220 (464)
++... -.+.+...+..|+.+ +++.+.+.|..++.. .++. +...+..|+.+-+.
T Consensus 172 ~~~~~~~g~t~L~~A~~~~~~~----~v~~Ll~~g~~~~~~~~~g~t~-L~~A~~~~~~~~~~ 229 (437)
T 1n11_A 172 PNAAGKNGLTPLHVAVHHNNLD----IVKLLLPRGGSPHSPAWNGYTP-LHIAAKQNQVEVAR 229 (437)
T ss_dssp TTCCCSSCCCHHHHHHHTTCHH----HHHHHGGGTCCSCCCCTTCCCH-HHHHHHTTCHHHHH
T ss_pred CCCCCCCCCCHHHHHHHcCCHH----HHHHHHhCCCCCCCcCCCCCCH-HHHHHHcCCHHHHH
Confidence 43321 112334445556554 344445555444332 2233 33344556554433
No 280
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=68.13 E-value=33 Score=25.18 Aligned_cols=66 Identities=9% Similarity=0.041 Sum_probs=37.2
Q ss_pred cCChhhHHHHHHHHHhcCCh---hHHHHHHHHHHhCCCCccHHHHHHHHHHHHhcCChHHHHHHHHHhH
Q 044770 301 LKATEQYNSVISVYCKNGFI---DKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGM 366 (464)
Q Consensus 301 ~~~~~~~~~li~~~~~~~~~---~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 366 (464)
.|+..+--....++++..+. .+++.+++++...+..-.......+.-++.+.|++++|.++.+.++
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL 104 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLF 104 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 34555555555566665443 3566666666654322123344445556777777777777777763
No 281
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=67.21 E-value=21 Score=28.52 Aligned_cols=20 Identities=20% Similarity=0.180 Sum_probs=9.7
Q ss_pred HHHHHHhhcChHHHHHHhhh
Q 044770 68 LLEFTIKNHGISQGEKLFCC 87 (464)
Q Consensus 68 l~~~~~~~g~~~~a~~~~~~ 87 (464)
.+...+..|+.+-+.-+++.
T Consensus 45 ~L~~A~~~~~~~~v~~Ll~~ 64 (240)
T 3eu9_A 45 LLHWAAINNRIDLVKYYISK 64 (240)
T ss_dssp HHHHHHHTTCHHHHHHHHHT
T ss_pred HHHHHHHhCCHHHHHHHHHc
Confidence 34444455555555544444
No 282
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=66.97 E-value=44 Score=26.22 Aligned_cols=56 Identities=14% Similarity=0.030 Sum_probs=36.3
Q ss_pred CcHHHHHHHHHHHHHcCCCCc-hhhHHHHHHHhcCCCCcccHHHHHHHHHhCCCCCC
Q 044770 109 GVIKLSLEYMKKMRVLGHSIS-YLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPH 164 (464)
Q Consensus 109 ~~~~~a~~~~~~m~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 164 (464)
+...++.++|..|...|+... ...|......+-..|++++|.++|+.-++.+-.|-
T Consensus 93 ~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P~ 149 (202)
T 3esl_A 93 NNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRPY 149 (202)
T ss_dssp TCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSH
T ss_pred cccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccH
Confidence 335677777777777766433 34456666666677777777777777766655553
No 283
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=66.58 E-value=23 Score=26.42 Aligned_cols=62 Identities=21% Similarity=0.324 Sum_probs=33.1
Q ss_pred HHHHHHHHhhcChHHHHHHhhhcCCC-CCchhHHHHHHHHHHhhCc--HHHHHHHHHHHHHcCCC
Q 044770 66 SYLLEFTIKNHGISQGEKLFCCIPKD-YQNELLYNNLVIACLDKGV--IKLSLEYMKKMRVLGHS 127 (464)
Q Consensus 66 ~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~li~~~~~~~~--~~~a~~~~~~m~~~~~~ 127 (464)
..++.-|...|+.++|...++++... .....+...+..++-+.++ .+.+..++..+...|+-
T Consensus 13 ~~lL~EY~~~~D~~EA~~cl~EL~~p~f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~i 77 (152)
T 2ion_A 13 DMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTI 77 (152)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHhCCCHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCc
Confidence 45566666667777777777776542 1123334444444444322 34556666666655543
No 284
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=66.35 E-value=67 Score=28.05 Aligned_cols=64 Identities=9% Similarity=0.064 Sum_probs=39.1
Q ss_pred HHHHHHHHHhhcChhhHHHHHHHhccCCCCchhhHHHHHHHhhccCC--hHHHHHHHHHHHhcccc
Q 044770 238 LDVLIILYGYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQ--VSRAEELWLEMQSVKQL 301 (464)
Q Consensus 238 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~~~a~~~~~~~~~~~~~ 301 (464)
...++.-|...++.++|.+.++.+.........+...+..++-+.++ .+...+++..+...++.
T Consensus 220 i~~lL~EY~~s~D~~EA~~ci~EL~~p~fhhe~V~~av~~aLE~~~~~~re~~~~LL~~L~~~gll 285 (358)
T 3eiq_C 220 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTI 285 (358)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHhccCCCHHHHHHHHHHccCCcchHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCC
Confidence 45667777777888888888887765332233344455555555432 34566777777765544
No 285
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=65.66 E-value=95 Score=29.59 Aligned_cols=116 Identities=8% Similarity=0.012 Sum_probs=69.1
Q ss_pred CChhHHHHHHHHHHhCCCCCcHhHHHHHHH----HHHhcChhhHHHHHHHHHHhccCCCChhhHHHHHHHHHhhcChhhH
Q 044770 179 HNIEGLMKVYSDMKRSEVEPNEVSYCILAT----AHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDL 254 (464)
Q Consensus 179 ~~~~~a~~~~~~m~~~~~~p~~~~~~~li~----~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 254 (464)
.+.+.|...|....... ..+......+-. .....+...++...+..... ...+.....-.+....+.|+++.+
T Consensus 228 ~d~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~e~~~r~Alr~~d~~~a 304 (618)
T 1qsa_A 228 QDAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIM--RSQSTSLIERRVRMALGTGDRRGL 304 (618)
T ss_dssp HCHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHH--TCCCHHHHHHHHHHHHHHTCHHHH
T ss_pred cCHHHHHHHHHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccc--cCCChHHHHHHHHHHHHCCCHHHH
Confidence 36778888887775433 223222222222 22233424455555555433 223333344445555677999999
Q ss_pred HHHHHHhccCCCCchhhHHHHHHHhhccCChHHHHHHHHHHHh
Q 044770 255 ERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQS 297 (464)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 297 (464)
...|+.+...........--+..++...|+.++|..+|..+..
T Consensus 305 ~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 305 NTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 9999888775443444445667777888999999998888764
No 286
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=63.78 E-value=69 Score=27.34 Aligned_cols=53 Identities=9% Similarity=-0.145 Sum_probs=30.2
Q ss_pred HHHHHHHhhcchHHHHHHHHHHHHcCCCCCCchh---HHHHHHHHHhhcChHHHHHHhhhc
Q 044770 31 HSINRLRKLQLNKRALEVMEWVIRERPYRPKELD---YSYLLEFTIKNHGISQGEKLFCCI 88 (464)
Q Consensus 31 ~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~g~~~~a~~~~~~~ 88 (464)
..+...++.|+++....+++. |..++... -.+-+...+..|+.+-+.-+++.-
T Consensus 27 t~L~~Av~~g~~~~V~~LL~~-----Gadvn~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~g 82 (337)
T 4g8k_A 27 HLLIKAVQNEDVDLVQQLLEG-----GANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHG 82 (337)
T ss_dssp HHHHHHHHTTCHHHHHHHHHH-----TCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred hHHHHHHHcCCHHHHHHHHHC-----CCCCCccCCCCCcCHHHHHHHcCCHHHHHHHHHcC
Confidence 345556677887766655542 34443221 123445556778887777776654
No 287
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=63.28 E-value=81 Score=27.97 Aligned_cols=167 Identities=8% Similarity=-0.006 Sum_probs=91.9
Q ss_pred ChhchHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCCc---hhHHHHHHHHHhhcC-hHHHHHH----hhhcCCCCC---
Q 044770 25 HRGEIFHSINRLRKLQLNKRALEVMEWVIRERPYRPKE---LDYSYLLEFTIKNHG-ISQGEKL----FCCIPKDYQ--- 93 (464)
Q Consensus 25 ~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~-~~~a~~~----~~~~~~~~~--- 93 (464)
-...+..+...|.+.|+.++..+++.....-.+.-|-. .....++..+....+ .+.-.++ ++.......
T Consensus 18 ~e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~fl 97 (394)
T 3txn_A 18 KEQGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFL 97 (394)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567778888889999888888887664322111111 223455555554322 2222222 222222101
Q ss_pred chhHHHHHHHHHHhhCcHHHHHHHHHHHHHcCCCCc-----hhhHHHHHHHhcCCCCcccHHHHHHHHHhC--CCCCChh
Q 044770 94 NELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSIS-----YLVFNRLIILNSSPGRRKTIPNILRQMKAD--KVAPHVS 166 (464)
Q Consensus 94 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~ 166 (464)
....=..++..|...|++.+|++++..+.+.=-..| ..++..-+..|...+++..+...+...... .+.+++.
T Consensus 98 r~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~ 177 (394)
T 3txn_A 98 RQSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPK 177 (394)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHH
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHH
Confidence 111123577788888888888888888876311112 334555566677788888888887776542 2223332
Q ss_pred hHHHH----HHHHH-ccCChhHHHHHHHHH
Q 044770 167 TFHIL----MKIEA-NDHNIEGLMKVYSDM 191 (464)
Q Consensus 167 ~~~~l----~~~~~-~~~~~~~a~~~~~~m 191 (464)
.-..+ .-.+. ..++|..|...|-+.
T Consensus 178 i~a~i~~~~Gi~~l~~~rdyk~A~~~F~ea 207 (394)
T 3txn_A 178 VQGALDLQSGILHAADERDFKTAFSYFYEA 207 (394)
T ss_dssp HHHHHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHhccCHHHHHHHHHHH
Confidence 22111 12244 677888887777654
No 288
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=62.25 E-value=67 Score=26.63 Aligned_cols=119 Identities=18% Similarity=0.132 Sum_probs=72.5
Q ss_pred HHhhccCChHHHHHHHHHHHhccccCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCccH----HHHHHHHHHHHhc
Q 044770 277 EAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNA----ITYRHLALGCFKS 352 (464)
Q Consensus 277 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~----~~~~~ll~~~~~~ 352 (464)
..+.+.|.+++|+.....-.+. .+-|...-..++.-+|-.|+++.|..-++...+. .|+. .+|..+|.+=...
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~-~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l--~p~~~~~a~~yr~lI~aE~~R 81 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKA-SPKDASLRSSFIELLCIDGDFERADEQLMQSIKL--FPEYLPGASQLRHLVKAAQAR 81 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHT-CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CGGGHHHHHHHHHHHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHh-CCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CchhhHHHHHHHHHHHHHHHH
Confidence 3456788888888888877763 4457777888899999999999999888887773 4443 3455555431110
Q ss_pred CChHHHHHHHHHhHHHHhhhhhcCCCCcHHHHHHHHHHHH--hcCChhhHHHHHHHHHHc
Q 044770 353 NLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFA--EKGDVGNAENLFEELKKA 410 (464)
Q Consensus 353 ~~~~~a~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~--~~g~~~~A~~~~~~m~~~ 410 (464)
. ++|.-- .....-..| ..-...++.++. ..|+.++|..+-+++.+.
T Consensus 82 ----~--~vfaG~-----~~P~~~g~~-~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ 129 (273)
T 1zbp_A 82 ----K--DFAQGA-----ATAKVLGEN-EELTKSLVSFNLSMVSQDYEQVSELALQIEEL 129 (273)
T ss_dssp ----H--HHTTSC-----CCEECCCSC-HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred ----H--HHHcCC-----CCCCCCCCC-HHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhc
Confidence 0 111110 000011112 222345566554 469999999998888654
No 289
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=62.24 E-value=26 Score=28.02 Aligned_cols=9 Identities=11% Similarity=0.209 Sum_probs=4.3
Q ss_pred HhhCcHHHH
Q 044770 106 LDKGVIKLS 114 (464)
Q Consensus 106 ~~~~~~~~a 114 (464)
++.|+.+..
T Consensus 17 ~~~g~~~~~ 25 (240)
T 3eu9_A 17 TQYGIYERC 25 (240)
T ss_dssp HHTTCHHHH
T ss_pred HHcCChHHH
Confidence 445554443
No 290
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=60.93 E-value=49 Score=24.62 Aligned_cols=53 Identities=8% Similarity=0.043 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHcCCCCc-hhhHHHHHHHhcCCCCcccHHHHHHHHHhCCCCCCh
Q 044770 113 LSLEYMKKMRVLGHSIS-YLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHV 165 (464)
Q Consensus 113 ~a~~~~~~m~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 165 (464)
++.++|..|...|+-.. +..|......+-..|++++|.++|+.-++.+-.|-.
T Consensus 83 dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~~ 136 (152)
T 4a1g_A 83 DLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEPRE 136 (152)
T ss_dssp CHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHH
T ss_pred CHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHH
Confidence 36777777777766433 445666666677777777777777777776655543
No 291
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=60.66 E-value=37 Score=25.68 Aligned_cols=54 Identities=11% Similarity=0.067 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHcCCCCc-hhhHHHHHHHhcCCCCcccHHHHHHHHHhCCCCCChh
Q 044770 113 LSLEYMKKMRVLGHSIS-YLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVS 166 (464)
Q Consensus 113 ~a~~~~~~m~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 166 (464)
.+.++|..|...|+-.. +..|......+-..|++.+|.++|..-++.+-.|-..
T Consensus 78 ~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~~~ 132 (164)
T 2wvi_A 78 EPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPLER 132 (164)
T ss_dssp CHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHHH
T ss_pred CHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHH
Confidence 46678888888777544 4456677777778888888888888888877677654
No 292
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=59.95 E-value=58 Score=25.95 Aligned_cols=28 Identities=11% Similarity=0.215 Sum_probs=16.0
Q ss_pred HHHHHccCChhHHHHHHHHHHhCCCCCc
Q 044770 172 MKIEANDHNIEGLMKVYSDMKRSEVEPN 199 (464)
Q Consensus 172 ~~~~~~~~~~~~a~~~~~~m~~~~~~p~ 199 (464)
+...+..|+.+.+..+++.+.+.|..++
T Consensus 13 L~~A~~~g~~~~v~~Ll~~~~~~~~~~~ 40 (241)
T 1k1a_A 13 LHIAVVQGNLPAVHRLVNLFQQGGRELD 40 (241)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTTCCSC
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCC
Confidence 4445556676666666666555554433
No 293
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=59.29 E-value=24 Score=27.27 Aligned_cols=16 Identities=0% Similarity=0.005 Sum_probs=8.0
Q ss_pred HhhcChHHHHHHhhhc
Q 044770 73 IKNHGISQGEKLFCCI 88 (464)
Q Consensus 73 ~~~g~~~~a~~~~~~~ 88 (464)
+..|+.+....++..-
T Consensus 13 ~~~g~~~~v~~ll~~~ 28 (201)
T 3hra_A 13 ANQRDTKKVKEILQDT 28 (201)
T ss_dssp HHTTCHHHHHHHHTCT
T ss_pred HHhccHHHHHHHHHcC
Confidence 3445555555555443
No 294
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=57.98 E-value=87 Score=26.62 Aligned_cols=25 Identities=0% Similarity=0.017 Sum_probs=18.3
Q ss_pred HHHHHHHHhhcChHHHHHHhhhcCC
Q 044770 66 SYLLEFTIKNHGISQGEKLFCCIPK 90 (464)
Q Consensus 66 ~~l~~~~~~~g~~~~a~~~~~~~~~ 90 (464)
..++.-|...|+.++|...++++..
T Consensus 7 ~~ii~EYf~~~d~~Ea~~~l~el~~ 31 (307)
T 2zu6_B 7 TPIIQEYFEHGDTNEVAEMLRDLNL 31 (307)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHTTCC
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhCC
Confidence 4566777777888888888887765
No 295
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=57.17 E-value=56 Score=26.02 Aligned_cols=56 Identities=5% Similarity=-0.191 Sum_probs=31.8
Q ss_pred HHHHHHhhcchHHHHHHHHHHHHcCCCCCCch--hHHHHHHHHHhhcChHHHHHHhhhc
Q 044770 32 SINRLRKLQLNKRALEVMEWVIRERPYRPKEL--DYSYLLEFTIKNHGISQGEKLFCCI 88 (464)
Q Consensus 32 ~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~a~~~~~~~ 88 (464)
.+...+..|+.+....+++...+ .+..++.. ...+.+...+..|+.+-+..+++.-
T Consensus 12 ~L~~A~~~g~~~~v~~Ll~~~~~-~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g 69 (241)
T 1k1a_A 12 PLHIAVVQGNLPAVHRLVNLFQQ-GGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAG 69 (241)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH-TTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHh-cCCCCCcccccCCCHHHHHHHcCCHHHHHHHHHcC
Confidence 34455667787777777776655 33333322 1233455556677777666666543
No 296
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=57.07 E-value=17 Score=29.72 Aligned_cols=26 Identities=4% Similarity=-0.011 Sum_probs=14.8
Q ss_pred HHHhhCcHHHHHHHHHHHHHcCCCCc
Q 044770 104 ACLDKGVIKLSLEYMKKMRVLGHSIS 129 (464)
Q Consensus 104 ~~~~~~~~~~a~~~~~~m~~~~~~~~ 129 (464)
..++.|+.+....+++.+.+.|..++
T Consensus 11 ~A~~~g~~~~v~~ll~~l~~~~~~~~ 36 (260)
T 3jxi_A 11 DIVSRGSPDGLEGLLSFLLTHKKRLT 36 (260)
T ss_dssp HHHHHTCGGGGTTHHHHHHHHTCCTT
T ss_pred HHHHhCCHHHHHHHHHHHHhcCCCcc
Confidence 34455666666666666665555444
No 297
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=56.81 E-value=92 Score=26.53 Aligned_cols=59 Identities=14% Similarity=0.085 Sum_probs=32.5
Q ss_pred HHHHHHHHhhcChHHHHHHhhhcCCC-CCchh-HHHHHHHHHHhhCcHHHHHHHHHHHHHcCCCCc
Q 044770 66 SYLLEFTIKNHGISQGEKLFCCIPKD-YQNEL-LYNNLVIACLDKGVIKLSLEYMKKMRVLGHSIS 129 (464)
Q Consensus 66 ~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~-~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~ 129 (464)
+..+...++.|+++-+..+++.-... ..+.. -++.|. ..+..|+.+ +.+.+++.|..|+
T Consensus 26 ~t~L~~Av~~g~~~~V~~LL~~Gadvn~~~~~~g~TpLh-~A~~~g~~~----iv~~Ll~~ga~~~ 86 (337)
T 4g8k_A 26 NHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLH-NAVQMSRED----IVELLLRHGADPV 86 (337)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHH-HHHHTTCHH----HHHHHHHTTCCTT
T ss_pred ChHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCcCHHH-HHHHcCCHH----HHHHHHHcCCchh
Confidence 45566667889999888888764331 11111 223333 334566654 4445556665543
No 298
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=56.17 E-value=66 Score=24.68 Aligned_cols=55 Identities=15% Similarity=-0.016 Sum_probs=26.4
Q ss_pred HhhcChHHHHHHhhhcCCCCCc-hhHHHHHHHHHHhhCcHHHHHHHHHHHHHcCCCCc
Q 044770 73 IKNHGISQGEKLFCCIPKDYQN-ELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSIS 129 (464)
Q Consensus 73 ~~~g~~~~a~~~~~~~~~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~ 129 (464)
++.|+++....++..-... .+ ..-+ +.+...+..|+.+.-.++.+.+++.|..++
T Consensus 14 a~~g~~~~~~~l~~~~~~~-~~~~~g~-T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn 69 (186)
T 3t8k_A 14 AMLGTYEDFLELFEKGYED-KESVLKS-NILYDVLRNNNDEARYKISMFLINKGADIK 69 (186)
T ss_dssp HHHSCHHHHHHHHHHSSSC-HHHHHTT-THHHHHTTCSCHHHHHHHHHHHHHTTCCSS
T ss_pred HHcCCHHHHHHHHhcCccc-ccccCCC-CHHHHHHHcCCcchHHHHHHHHHHCCCCCC
Confidence 4556666655555543221 11 1112 233334445555555566666666665554
No 299
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=56.02 E-value=85 Score=28.99 Aligned_cols=184 Identities=8% Similarity=-0.008 Sum_probs=0.0
Q ss_pred hhhHHHHHHHhcCCCCcccHHHHHHHHHhCCCCCChhhHHHHH-------HHHHccCChhHHHHHHHHHHhCCCCCc---
Q 044770 130 YLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILM-------KIEANDHNIEGLMKVYSDMKRSEVEPN--- 199 (464)
Q Consensus 130 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~-------~~~~~~~~~~~a~~~~~~m~~~~~~p~--- 199 (464)
...+|.+++.|...+.++.|..+..... ++.+...-+..+ ..+.-.+++.+|.+.|...........
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lvsk~~---fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~~~~a~ 307 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFISKLE---YPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAPHNSKSL 307 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHHC---SCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSCSSSCS
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhcCc---CCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchhhh
Q ss_pred ---HhHHHHHHHHHHhcChhhHHHHHHHHHHhccCCCChhhHHHHHHHHHhhcChhhHHHHHHHhccCCCCchhhHHHHH
Q 044770 200 ---EVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSKSYVLAI 276 (464)
Q Consensus 200 ---~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~ 276 (464)
...+..++-+-.-.|+... ...+...+.......|..+..++ +.|+...-..+++.- -
T Consensus 308 gfr~~a~K~lI~V~LLlG~iP~----r~lf~q~~l~~~L~pY~~Lv~Av-r~GdL~~F~~~L~~h--------------~ 368 (523)
T 4b4t_S 308 GFLQQSNKLHCCIQLLMGDIPE----LSFFHQSNMQKSLLPYYHLTKAV-KLGDLKKFTSTITKY--------------K 368 (523)
T ss_dssp HHHHHHHHHHHHHHHHHTCCCC----HHHHTTTSCHHHHHHHHHHHHHH-HHTCHHHHHHHHHHT--------------H
T ss_pred hHHHHHHHHHHhHHhhcCCCCC----hHHhhchhHHHHHHHHHHHHHHH-HcCCHHHHHHHHHHh--------------c
Q ss_pred HHhhccCChHHHHHHHHHHHhccccCChhhHHHH----HHHHHhcCChhHHHHHHHHHHhCCC
Q 044770 277 EAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSV----ISVYCKNGFIDKASGLLKEMSMNGC 335 (464)
Q Consensus 277 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l----i~~~~~~~~~~~a~~~~~~m~~~g~ 335 (464)
..+.+.|.+.-..++-....+.++..=..+|+.+ +..-......++|..+...|+..|.
T Consensus 369 ~~F~~Dgty~LI~rLr~~vir~~irkis~~YsrIsL~dIa~kL~L~s~eeaE~iVAkmI~dG~ 431 (523)
T 4b4t_S 369 QLLLKDDTYQLCVRLRSNVIKTGIRIISLTYKKISLRDICLKLNLDSEQTVEYMVSRAIRDGV 431 (523)
T ss_dssp HHHHHTTCTHHHHHHHHHHHHHHHHHSCCCSSEECHHHHHHHHHHHHSSCHHHHHHHHHHHTS
T ss_pred ceeccCChhHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHhCCCCHHHHHHHHHHHHHcCC
No 300
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=55.77 E-value=62 Score=26.24 Aligned_cols=94 Identities=14% Similarity=0.047 Sum_probs=50.5
Q ss_pred hHHHHHHHHhhcchHHHHHHHHHHHHcC-CCCC----CchhHHHHHHHHHhhcChHHHHHHhhhcCCCCCchhHHHHHHH
Q 044770 29 IFHSINRLRKLQLNKRALEVMEWVIRER-PYRP----KELDYSYLLEFTIKNHGISQGEKLFCCIPKDYQNELLYNNLVI 103 (464)
Q Consensus 29 ~~~~l~~~~~~~~~~~A~~~~~~~~~~~-~~~~----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~li~ 103 (464)
...-+..+...+++++|.++++...+.. +.++ ........+..-.....-.-+..+.+.+.. ..+...-...+.
T Consensus 21 ~~deLDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l~~-~~~~~~~r~~v~ 99 (235)
T 2d2s_A 21 GVEEIDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSILS-SNEIVHLKSGTE 99 (235)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHT-CSSHHHHHHHHH
T ss_pred ccHHHHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCCHHHHHHHHH
Confidence 3345678888999999999998876522 1111 112222233333333333333444444422 234444555566
Q ss_pred HHHhhCcHHHHHHHHHHHHH
Q 044770 104 ACLDKGVIKLSLEYMKKMRV 123 (464)
Q Consensus 104 ~~~~~~~~~~a~~~~~~m~~ 123 (464)
.+.+.|+.++|.++|-+...
T Consensus 100 ~L~rLg~~~~A~~lfL~~rs 119 (235)
T 2d2s_A 100 NMIKLGLPEQALDLFLQNRS 119 (235)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHCCChhHHHHHHHHHHH
Confidence 66777777777777755543
No 301
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=53.97 E-value=62 Score=23.71 Aligned_cols=63 Identities=11% Similarity=-0.020 Sum_probs=47.0
Q ss_pred HHHHhccccCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCccHHHHHHHHHHHHhcCChH
Q 044770 293 LEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVE 356 (464)
Q Consensus 293 ~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~ 356 (464)
+.+.+.|..++. .-..++..+...+..-.|.++++.+.+.+...+..|....+..+...|-+.
T Consensus 11 ~~l~~~g~r~T~-qR~~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~ 73 (145)
T 2fe3_A 11 ETLKETGVRITP-QRHAILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESGLVK 73 (145)
T ss_dssp HHHHHTTCCCCH-HHHHHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHcCCCCCH-HHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCCCEE
Confidence 345566766554 445566777777777889999999998887778888888888888887654
No 302
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=52.86 E-value=60 Score=23.99 Aligned_cols=63 Identities=11% Similarity=0.097 Sum_probs=45.7
Q ss_pred HHHHhccccCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCccHHHHHHHHHHHHhcCChH
Q 044770 293 LEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVE 356 (464)
Q Consensus 293 ~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~ 356 (464)
+.+.+.|..++. .-..++..+...+..-.|.++++.+.+.+...+..|....+..+...|-+.
T Consensus 16 ~~l~~~g~r~T~-qR~~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~ 78 (150)
T 2xig_A 16 MSIKKNGLKNSK-QREEVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKENFIS 78 (150)
T ss_dssp HHHHHCC--CHH-HHHHHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHcCCCCCH-HHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCcEE
Confidence 345566665443 445567777777778899999999998877778888888888888887654
No 303
>2keb_A DNA polymerase subunit alpha B; DNA polymerase alpha, DNA replication, nucleus, phosphoprote binding protein; HET: DNA; NMR {Homo sapiens}
Probab=51.76 E-value=52 Score=22.14 Aligned_cols=60 Identities=15% Similarity=0.131 Sum_probs=45.4
Q ss_pred hhhHHHHHHHHHHcCCCCcHHHHHHHHHHHHHcCCChhHHHHH-----HHhCCCCCCHHHHHHHH
Q 044770 397 VGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKINDPNLLRR-----MILGGARPDAETYSLLK 456 (464)
Q Consensus 397 ~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~a~~~~~~-----m~~~~~~p~~~t~~~L~ 456 (464)
.-.|.++.+++...|+.|+..+..-++.-|...+-.+.++..+ ....|..|+..+.+.+-
T Consensus 25 ~Vsae~L~eEfdefGi~~~d~VldKc~ELC~~y~lda~e~VeeWmAFsts~~g~~pT~enL~~FE 89 (101)
T 2keb_A 25 SASAQQLAEELQIFGLDCEEALIEKLVELCVQYGQNEEGMVGELIAFCTSTHKVGLTSEILNSFE 89 (101)
T ss_dssp CCCHHHHHHHHHHHTCBCCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTCSBCCHHHHHHHH
T ss_pred hccHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHH
Confidence 4567889999999999999999999999999988644332221 23568889888877654
No 304
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=51.75 E-value=50 Score=26.27 Aligned_cols=177 Identities=7% Similarity=-0.027 Sum_probs=74.3
Q ss_pred HHHHHHhhcChHHHHHHhhhcCCC-CCchhHHHHHHHHHHhhCcHHHHHHHHHHHHHcC-CCCc---hhhHHHHHHHhcC
Q 044770 68 LLEFTIKNHGISQGEKLFCCIPKD-YQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLG-HSIS---YLVFNRLIILNSS 142 (464)
Q Consensus 68 l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~-~~~~---~~~~~~l~~~~~~ 142 (464)
.+...+..|+.+-+..+++.-... ..+....+. +...+..|+.+- ++.+.+.| ..++ ..-.+.+. ..+.
T Consensus 47 ~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~-L~~A~~~~~~~~----~~~Ll~~~~~~~~~~~~~g~t~L~-~A~~ 120 (237)
T 3b7b_A 47 PLMEAAENNHLEAVKYLIKAGALVDPKDAEGSTC-LHLAAKKGHYEV----VQYLLSNGQMDVNCQDDGGWTPMI-WATE 120 (237)
T ss_dssp HHHHHHHTTCHHHHHHHHTTTCCCCCCCTTSCCH-HHHHHHTTCHHH----HHHHHTTTCCCTTCCCTTSCCHHH-HHHH
T ss_pred HHHHHHHhCCHHHHHHHHhCCCCCCCCCCCCCcH-HHHHHHcCCHHH----HHHHHhCCCCCcccCCCCCCCHHH-HHHH
Confidence 444555667777666666553221 112222222 223334555433 33334433 2221 11222222 2233
Q ss_pred CCCcccHHHHHHHHHhCCCCCChhh--HHHHHHHHHccCChhHHHHHHHHHHhCCCCCcHhH--HHHHHHHHHhcChhhH
Q 044770 143 PGRRKTIPNILRQMKADKVAPHVST--FHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVS--YCILATAHAVARLYTV 218 (464)
Q Consensus 143 ~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~--~~~li~~~~~~~~~~~ 218 (464)
.|+. ++++.+.+.|..++... -.+.+...+..|+.+ +++.+.+.|..++... -.+.+...++.|+.+-
T Consensus 121 ~~~~----~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~----~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~ 192 (237)
T 3b7b_A 121 YKHV----DLVKLLLSKGSDINIRDNEENICLHWAAFSGCVD----IAEILLAAKCDLHAVNIHGDSPLHIAARENRYDC 192 (237)
T ss_dssp TTCH----HHHHHHHHTTCCTTCCCTTSCCHHHHHHHHCCHH----HHHHHHTTTCCTTCCCTTCCCHHHHHHHTTCHHH
T ss_pred cCCH----HHHHHHHHCCCCCCccCCCCCCHHHHHHHCCCHH----HHHHHHHcCCCCCCcCCCCCCHHHHHHHhCCHhH
Confidence 3433 34444555554443221 112333444556544 4444455554443221 1122333445555543
Q ss_pred HHHHHHHHHhccCCCChh--hHHHHHHHHHhhcChhhHHHHHHHhc
Q 044770 219 AETYVEALEKSMTGNNWS--TLDVLIILYGYLAKGKDLERIWATVQ 262 (464)
Q Consensus 219 a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~ 262 (464)
+ +.+.+.|..++.. .-.+-+......|+...+.++.+.+.
T Consensus 193 v----~~Ll~~gad~~~~d~~g~t~l~~A~~~~~~~~~~~l~~~l~ 234 (237)
T 3b7b_A 193 V----VLFLSRDSDVTLKNKEGETPLQCASLNSQVWSALQMSKALQ 234 (237)
T ss_dssp H----HHHHTTTCCTTCCCTTSCCHHHHSCTTCHHHHHHHHHHHHH
T ss_pred H----HHHHHcCCCCCccCCCCCCHHHHHHHHHHHHHHHHHHHHhh
Confidence 3 3344455444321 11223444556666666666666554
No 305
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=51.55 E-value=60 Score=23.47 Aligned_cols=61 Identities=10% Similarity=-0.018 Sum_probs=44.5
Q ss_pred HHhccccCChhhHHHHHHHHHhcC-ChhHHHHHHHHHHhCCCCccHHHHHHHHHHHHhcCChH
Q 044770 295 MQSVKQLKATEQYNSVISVYCKNG-FIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVE 356 (464)
Q Consensus 295 ~~~~~~~~~~~~~~~li~~~~~~~-~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~ 356 (464)
+.+.|..++. .-..++..+...+ ..-.|.++++.+.+.+...+..|...-+..+...|-+.
T Consensus 9 l~~~g~r~T~-qR~~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~ 70 (136)
T 1mzb_A 9 LRKAGLKVTL-PRVKILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAGLVV 70 (136)
T ss_dssp HHHTTCCCCH-HHHHHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSEE
T ss_pred HHHCCCCCCH-HHHHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCcEE
Confidence 4556666554 4455666676666 67889999999999887788888888888888877554
No 306
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=51.31 E-value=55 Score=24.04 Aligned_cols=62 Identities=13% Similarity=-0.033 Sum_probs=45.2
Q ss_pred HHHHhccccCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCccHHHHHHHHHHHHhcCChH
Q 044770 293 LEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVE 356 (464)
Q Consensus 293 ~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~ 356 (464)
+.+.+.|..++. .-..++..+...+ .-.|.++++.+.+.+...+..|...-+..+...|-+.
T Consensus 8 ~~L~~~g~r~T~-qR~~Il~~l~~~~-h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Glv~ 69 (145)
T 3eyy_A 8 SDLRQRGYRLTP-QRQLVLEAVDTLE-HATPDDILGEVRKTASGINISTVYRTLELLEELGLVS 69 (145)
T ss_dssp HHHHTTTCCCCH-HHHHHHHHHHHHS-SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHTSEE
T ss_pred HHHHHcCCCcCH-HHHHHHHHHHhcC-CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCCcEE
Confidence 345556666554 3455566666666 6789999999999887788888888888888877554
No 307
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=50.69 E-value=77 Score=24.99 Aligned_cols=20 Identities=0% Similarity=-0.198 Sum_probs=11.4
Q ss_pred HHHHHhhcChHHHHHHhhhc
Q 044770 69 LEFTIKNHGISQGEKLFCCI 88 (464)
Q Consensus 69 ~~~~~~~g~~~~a~~~~~~~ 88 (464)
+...+..|+++....+++.-
T Consensus 10 l~~A~~~g~~~~v~~ll~~~ 29 (231)
T 3aji_A 10 ICNLAYSGKLDELKERILAD 29 (231)
T ss_dssp HHHHHHHTCHHHHHHHHHHC
T ss_pred HHHHHHhCCHHHHHHHHHhc
Confidence 44455566666666666543
No 308
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=50.61 E-value=53 Score=26.00 Aligned_cols=20 Identities=20% Similarity=0.212 Sum_probs=10.0
Q ss_pred HHHhhcChHHHHHHhhhcCC
Q 044770 71 FTIKNHGISQGEKLFCCIPK 90 (464)
Q Consensus 71 ~~~~~g~~~~a~~~~~~~~~ 90 (464)
.|.+.|.+++|.++|++...
T Consensus 123 VCiek~~f~kA~eiLkr~~~ 142 (235)
T 3bu8_A 123 ICIKNKEFEKASKILKKHMS 142 (235)
T ss_dssp HHHHTTCHHHHHHHHHHHST
T ss_pred HHHHhcchHHHHHHHHHHhc
Confidence 34445555555555555444
No 309
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=50.54 E-value=92 Score=24.67 Aligned_cols=22 Identities=32% Similarity=0.339 Sum_probs=14.0
Q ss_pred HHHHHhcCChhHHHHHHHHHHh
Q 044770 311 ISVYCKNGFIDKASGLLKEMSM 332 (464)
Q Consensus 311 i~~~~~~~~~~~a~~~~~~m~~ 332 (464)
+..|.+.|.+++|.+++++...
T Consensus 121 V~VCiek~~f~kA~eiLkr~~~ 142 (235)
T 3bu8_A 121 VIICIKNKEFEKASKILKKHMS 142 (235)
T ss_dssp HHHHHHTTCHHHHHHHHHHHST
T ss_pred HHHHHHhcchHHHHHHHHHHhc
Confidence 3456666667777777766655
No 310
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=50.31 E-value=57 Score=24.57 Aligned_cols=71 Identities=8% Similarity=-0.052 Sum_probs=50.9
Q ss_pred HHHHHHHH-HHHhccccCChhhHHHHHHHHHhcCChhHHHHHHHHHHhC--CCCccHHHHHHHHHHHHhcCChHH
Q 044770 286 SRAEELWL-EMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMN--GCKPNAITYRHLALGCFKSNLVEE 357 (464)
Q Consensus 286 ~~a~~~~~-~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~--g~~p~~~~~~~ll~~~~~~~~~~~ 357 (464)
+.+.+-+. .+.+.|...+. .-..++..+...+..-.|.++++.+.+. +...+..|...-+..+...|-+.+
T Consensus 14 ~~~~~~~~~~L~~~g~r~T~-qR~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Glv~~ 87 (162)
T 4ets_A 14 DVLLERFKKILRQGGLKYTK-QREVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEMVTS 87 (162)
T ss_dssp HHHHHHHHHHHHHHTCCCCH-HHHHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCEEE
Confidence 34444443 34556666543 5566777888888888999999999887 777788888888888888886543
No 311
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=49.60 E-value=24 Score=28.80 Aligned_cols=54 Identities=6% Similarity=-0.026 Sum_probs=28.5
Q ss_pred HHHHHhhcchHHHHHHHHHHHHcCCCCCCchh-------HHHHHHHHH--hhcChHHHHHHhhh
Q 044770 33 INRLRKLQLNKRALEVMEWVIRERPYRPKELD-------YSYLLEFTI--KNHGISQGEKLFCC 87 (464)
Q Consensus 33 l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~-------~~~l~~~~~--~~g~~~~a~~~~~~ 87 (464)
+...++.|+.+....+++.+.+ .+..++... .+.|..+.. +.|+.+-+..+++.
T Consensus 9 L~~A~~~g~~~~v~~ll~~l~~-~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~ 71 (260)
T 3jxi_A 9 LFDIVSRGSPDGLEGLLSFLLT-HKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDI 71 (260)
T ss_dssp HHHHHHHTCGGGGTTHHHHHHH-HTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHh-cCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHh
Confidence 4445567777777777776665 333333222 233332221 45666666666554
No 312
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=49.19 E-value=1.5e+02 Score=26.79 Aligned_cols=21 Identities=10% Similarity=0.162 Sum_probs=10.2
Q ss_pred CChhHHHHHHHHHHhCCCCCc
Q 044770 179 HNIEGLMKVYSDMKRSEVEPN 199 (464)
Q Consensus 179 ~~~~~a~~~~~~m~~~~~~p~ 199 (464)
++.+.|+.++..|.+.|..|.
T Consensus 269 sd~daAl~~la~ml~~Gedp~ 289 (447)
T 3pvs_A 269 SAPDAALYWYARIITAGGDPL 289 (447)
T ss_dssp TCHHHHHHHHHHHHHTTCCHH
T ss_pred CCHHHHHHHHHHHHHcCCCHH
Confidence 445555555555555444433
No 313
>3d5l_A Regulatory protein RECX; PSI-II, NYSGXRC, DNA repair, 10123K, structural genomi protein structure initiative; 2.35A {Lactobacillus reuteri}
Probab=48.27 E-value=85 Score=25.10 Aligned_cols=51 Identities=8% Similarity=-0.096 Sum_probs=26.4
Q ss_pred HHHHHHHHHhHHHHhhhhhcCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCC
Q 044770 356 EEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTK 414 (464)
Q Consensus 356 ~~a~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p 414 (464)
+....+++.+ ...|.-.|...-.+.+....+.+.+ ....+-.++...|+.+
T Consensus 93 e~i~~vl~~L-------~~~g~ldD~rfA~~~v~~~~~~~~~-G~~~I~~eL~~KGI~~ 143 (221)
T 3d5l_A 93 EFVEPILKKL-------RGQQLIDDHAYAASYVRTMINTDLK-GPGIIRQHLRQKGIGE 143 (221)
T ss_dssp HHHHHHHHHH-------HHTTCCCHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHTTCCH
T ss_pred HHHHHHHHHH-------HHcCCCCHHHHHHHHHHHHHHhccc-cHHHHHHHHHHcCCCH
Confidence 3444555555 4556665555545555554442221 3445566666777644
No 314
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=48.08 E-value=83 Score=23.40 Aligned_cols=50 Identities=6% Similarity=-0.021 Sum_probs=27.1
Q ss_pred HHHHHHHhHHHHhhhhhcCCCC-cHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCC
Q 044770 358 GFKALELGMKLITTKKVRSSTP-WLETTLSIIEIFAEKGDVGNAENLFEELKKANYTK 414 (464)
Q Consensus 358 a~~~~~~~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p 414 (464)
+.++|..| ...++-- ....|......+...|++.+|.++|+.-.+.+-.|
T Consensus 84 p~~if~~L-------~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 134 (152)
T 4a1g_A 84 LHQFFEFL-------YNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEP 134 (152)
T ss_dssp HHHHHHHH-------HTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred HHHHHHHH-------HHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 45555555 3333332 33445555555666666666666666665555555
No 315
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=47.80 E-value=65 Score=23.80 Aligned_cols=63 Identities=11% Similarity=-0.013 Sum_probs=45.7
Q ss_pred HHHhccccCChhhHHHHHHHHHhcC-ChhHHHHHHHHHHhCCCCccHHHHHHHHHHHHhcCChHH
Q 044770 294 EMQSVKQLKATEQYNSVISVYCKNG-FIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEE 357 (464)
Q Consensus 294 ~~~~~~~~~~~~~~~~li~~~~~~~-~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~ 357 (464)
.+.+.|..++. .-..++..+...+ ..-.|.++++.+.+.+...+..|...-+..+...|-+.+
T Consensus 7 ~l~~~g~r~T~-qR~~Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~~ 70 (150)
T 2w57_A 7 ALKDAGLKVTL-PRLKILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAGIVTR 70 (150)
T ss_dssp HHHHTTCCCCH-HHHHHHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHcCCCCCH-HHHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCcEEE
Confidence 45566666554 3445566666665 677899999999998877888888888888888876543
No 316
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=46.74 E-value=57 Score=25.82 Aligned_cols=19 Identities=11% Similarity=-0.090 Sum_probs=10.6
Q ss_pred HHHHHhcChhhHHHHHHHH
Q 044770 207 ATAHAVARLYTVAETYVEA 225 (464)
Q Consensus 207 i~~~~~~~~~~~a~~~~~~ 225 (464)
+...+..|+.+....+++.
T Consensus 10 l~~A~~~g~~~~v~~ll~~ 28 (231)
T 3aji_A 10 ICNLAYSGKLDELKERILA 28 (231)
T ss_dssp HHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHh
Confidence 3444556666666655554
No 317
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=45.54 E-value=1.2e+02 Score=24.54 Aligned_cols=25 Identities=16% Similarity=0.211 Sum_probs=13.5
Q ss_pred HHHHHHHhhccCChHHHHHHHHHHH
Q 044770 272 YVLAIEAFGRIAQVSRAEELWLEMQ 296 (464)
Q Consensus 272 ~~~l~~~~~~~g~~~~a~~~~~~~~ 296 (464)
....+..+.+.|+.++|.++|-+..
T Consensus 94 ~r~~v~~L~rLg~~~~A~~lfL~~r 118 (235)
T 2d2s_A 94 LKSGTENMIKLGLPEQALDLFLQNR 118 (235)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCChhHHHHHHHHHH
Confidence 3344455555666666666554433
No 318
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=42.94 E-value=88 Score=24.78 Aligned_cols=209 Identities=9% Similarity=-0.030 Sum_probs=94.5
Q ss_pred HHHHHHhhcChHHHHHHhhhcCCC-CCchhHHHHHHHHHHhhCcHHHHHHHHHHHHHcCCCCch---hhHHHHHHHhcCC
Q 044770 68 LLEFTIKNHGISQGEKLFCCIPKD-YQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISY---LVFNRLIILNSSP 143 (464)
Q Consensus 68 l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~---~~~~~l~~~~~~~ 143 (464)
.+...+..|+.+-+..+++.-... ..+..-++. +...+..|+.+- ++.+.+.|..++. ...+.+. ..+..
T Consensus 14 ~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~-L~~A~~~~~~~~----v~~Ll~~g~~~~~~~~~g~t~L~-~A~~~ 87 (237)
T 3b7b_A 14 PLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTP-LMEAAENNHLEA----VKYLIKAGALVDPKDAEGSTCLH-LAAKK 87 (237)
T ss_dssp HHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCH-HHHHHHTTCHHH----HHHHHTTTCCCCCCCTTSCCHHH-HHHHT
T ss_pred HHHHHHHcCcHHHHHHHHHcCCCcCccCCCCCCH-HHHHHHhCCHHH----HHHHHhCCCCCCCCCCCCCcHHH-HHHHc
Confidence 344455666666665555543221 112222222 333345566543 3444455544432 2222232 33344
Q ss_pred CCcccHHHHHHHHHhCC-CCCC---hhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCcHh---HHHHHHHHHHhcChh
Q 044770 144 GRRKTIPNILRQMKADK-VAPH---VSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEV---SYCILATAHAVARLY 216 (464)
Q Consensus 144 ~~~~~a~~~~~~~~~~~-~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~---~~~~li~~~~~~~~~ 216 (464)
|+. ++++.+.+.| ..++ ..-.+ .+...+..|+.+ +++.+.+.|..++.. ..+ .+...+..|+.
T Consensus 88 ~~~----~~~~~Ll~~~~~~~~~~~~~g~t-~L~~A~~~~~~~----~~~~Ll~~g~~~~~~~~~g~t-~L~~A~~~~~~ 157 (237)
T 3b7b_A 88 GHY----EVVQYLLSNGQMDVNCQDDGGWT-PMIWATEYKHVD----LVKLLLSKGSDINIRDNEENI-CLHWAAFSGCV 157 (237)
T ss_dssp TCH----HHHHHHHTTTCCCTTCCCTTSCC-HHHHHHHTTCHH----HHHHHHHTTCCTTCCCTTSCC-HHHHHHHHCCH
T ss_pred CCH----HHHHHHHhCCCCCcccCCCCCCC-HHHHHHHcCCHH----HHHHHHHCCCCCCccCCCCCC-HHHHHHHCCCH
Confidence 543 4444555544 2222 11222 334445556654 444444555444322 122 23334455655
Q ss_pred hHHHHHHHHHHhccCCCChhh--HHHHHHHHHhhcChhhHHHHHHHhccCCCCchhhHHHHHHHhhccCChHHHHHHHHH
Q 044770 217 TVAETYVEALEKSMTGNNWST--LDVLIILYGYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLE 294 (464)
Q Consensus 217 ~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 294 (464)
+ +++.+.+.|..++... -.+.+......|+.+-+.-+++.-......+.. -.+-+......|+...+.++.+.
T Consensus 158 ~----~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~gad~~~~d~~-g~t~l~~A~~~~~~~~~~~l~~~ 232 (237)
T 3b7b_A 158 D----IAEILLAAKCDLHAVNIHGDSPLHIAARENRYDCVVLFLSRDSDVTLKNKE-GETPLQCASLNSQVWSALQMSKA 232 (237)
T ss_dssp H----HHHHHHTTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTT-SCCHHHHSCTTCHHHHHHHHHHH
T ss_pred H----HHHHHHHcCCCCCCcCCCCCCHHHHHHHhCCHhHHHHHHHcCCCCCccCCC-CCCHHHHHHHHHHHHHHHHHHHH
Confidence 4 4444555555544211 112344455666666555544432211111111 12334556677888888888887
Q ss_pred HHh
Q 044770 295 MQS 297 (464)
Q Consensus 295 ~~~ 297 (464)
+.+
T Consensus 233 l~d 235 (237)
T 3b7b_A 233 LQD 235 (237)
T ss_dssp HHH
T ss_pred hhc
Confidence 765
No 319
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=41.72 E-value=1.3e+02 Score=23.71 Aligned_cols=24 Identities=13% Similarity=-0.171 Sum_probs=13.7
Q ss_pred HHHHhcChhhHHHHHHHHHHhccC
Q 044770 208 TAHAVARLYTVAETYVEALEKSMT 231 (464)
Q Consensus 208 ~~~~~~~~~~~a~~~~~~~~~~~~ 231 (464)
...+..|+.+-+..+++.+.+.|.
T Consensus 159 ~~A~~~~~~~~~~~i~~~Ll~~g~ 182 (232)
T 2rfa_A 159 HILILQPNKTFACQMYNLLLSYDG 182 (232)
T ss_dssp HHHHTCSCHHHHHHHHHHHHHTTC
T ss_pred HHHHHcCChHHHHHHHHHHHhcCC
Confidence 334455666666566666665554
No 320
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=41.71 E-value=89 Score=24.65 Aligned_cols=28 Identities=11% Similarity=0.102 Sum_probs=19.3
Q ss_pred HHHHHHhcCChhhHHHHHHHHHHcCCCC
Q 044770 387 IIEIFAEKGDVGNAENLFEELKKANYTK 414 (464)
Q Consensus 387 li~~~~~~g~~~~A~~~~~~m~~~~~~p 414 (464)
.+...+..|+.+-+..+++.+.+.|..+
T Consensus 157 ~L~~A~~~~~~~~~~~i~~~Ll~~g~~~ 184 (232)
T 2rfa_A 157 VLHILILQPNKTFACQMYNLLLSYDGGD 184 (232)
T ss_dssp HHHHHHTCSCHHHHHHHHHHHHHTTCSC
T ss_pred HHHHHHHcCChHHHHHHHHHHHhcCCch
Confidence 3445567788887777778788776543
No 321
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=41.12 E-value=1.1e+02 Score=24.97 Aligned_cols=19 Identities=5% Similarity=0.186 Sum_probs=9.7
Q ss_pred cCCCCcccHHHHHHHHHhC
Q 044770 141 SSPGRRKTIPNILRQMKAD 159 (464)
Q Consensus 141 ~~~~~~~~a~~~~~~~~~~ 159 (464)
++.|+.+.+..+++...+.
T Consensus 21 ~~~g~~~~v~~Ll~~~~~~ 39 (273)
T 2pnn_A 21 VAQSNCQELESLLPFLQRS 39 (273)
T ss_dssp HHTTCSSTTTTHHHHHHHS
T ss_pred HHcCCHHHHHHHHHHHhhc
Confidence 3445555555555554443
No 322
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=40.96 E-value=2.1e+02 Score=25.93 Aligned_cols=30 Identities=13% Similarity=0.145 Sum_probs=21.4
Q ss_pred hhCcHHHHHHHHHHHHHcCCCCchhhHHHH
Q 044770 107 DKGVIKLSLEYMKKMRVLGHSISYLVFNRL 136 (464)
Q Consensus 107 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l 136 (464)
+.++.+.|+.++.+|.+.|..|....-..+
T Consensus 267 rgsd~daAl~~la~ml~~Gedp~~i~rrl~ 296 (447)
T 3pvs_A 267 RGSAPDAALYWYARIITAGGDPLYVARRCL 296 (447)
T ss_dssp HTTCHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred hCCCHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 457889999999999988866554433333
No 323
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=40.72 E-value=1.2e+02 Score=24.44 Aligned_cols=23 Identities=13% Similarity=0.140 Sum_probs=11.7
Q ss_pred HHhhCcHHHHHHHHHHHHHcCCC
Q 044770 105 CLDKGVIKLSLEYMKKMRVLGHS 127 (464)
Q Consensus 105 ~~~~~~~~~a~~~~~~m~~~~~~ 127 (464)
.+..|+.+....+++.+.+.|..
T Consensus 9 A~~~g~~~~v~~ll~~l~~~g~~ 31 (256)
T 2etb_A 9 VVSRGVPEELTGLLEYLRWNSKY 31 (256)
T ss_dssp HHHHTCGGGGTTHHHHHHHHTCC
T ss_pred HHHcCCHHHHHHHHHHHHHcCCC
Confidence 34455555555555555554443
No 324
>2b7e_A PRE-mRNA processing protein PRP40; structural protein; NMR {Saccharomyces cerevisiae} SCOP: a.159.2.1
Probab=40.33 E-value=34 Score=20.52 Aligned_cols=29 Identities=24% Similarity=0.336 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHhccccCChhhHHHHHHHH
Q 044770 286 SRAEELWLEMQSVKQLKATEQYNSVISVY 314 (464)
Q Consensus 286 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 314 (464)
++|.+.|.+|.+....++..+|...+..+
T Consensus 3 eEae~aF~~lL~~~~V~s~wsweqamr~i 31 (59)
T 2b7e_A 3 MEAEKEFITMLKENQVDSTWSFSRIISEL 31 (59)
T ss_dssp THHHHHHHHHHHHTTCCSSCCHHHHHHHH
T ss_pred hHHHHHHHHHHHHcCCCCCCcHHHHHHHh
Confidence 45666666655544444455666666655
No 325
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=40.25 E-value=1.1e+02 Score=22.45 Aligned_cols=34 Identities=3% Similarity=-0.095 Sum_probs=16.1
Q ss_pred hhHHHHHHHHHHhCCCCCcHhHHHHHHHHHHhcC
Q 044770 181 IEGLMKVYSDMKRSEVEPNEVSYCILATAHAVAR 214 (464)
Q Consensus 181 ~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~ 214 (464)
.-.|.++++.+.+.+...+..|..-.+..+...|
T Consensus 33 h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 66 (145)
T 3eyy_A 33 HATPDDILGEVRKTASGINISTVYRTLELLEELG 66 (145)
T ss_dssp SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCC
Confidence 4455555555555544444444444444444433
No 326
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=40.25 E-value=1.3e+02 Score=23.35 Aligned_cols=154 Identities=9% Similarity=-0.029 Sum_probs=65.8
Q ss_pred CChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCcHhHHHHHHHHHHhcChhhHHHHHHHHHHhccCCCChhhHHHHH
Q 044770 163 PHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLI 242 (464)
Q Consensus 163 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 242 (464)
++...-...+..+.+.+..+. ...+..+.. .++...-...+.++.+.++.+ +...+..+.. .++..+-...+
T Consensus 31 ~~~~vR~~A~~~L~~~~~~~~-~~~L~~~l~---~~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~---~~~~~vr~~a~ 102 (211)
T 3ltm_A 31 DSYYVRRAAAYALGKIGDERA-VEPLIKALK---DEDAWVRRAAADALGQIGDER-AVEPLIKALK---DEDGWVRQSAA 102 (211)
T ss_dssp SSHHHHHHHHHHHHHHCCGGG-HHHHHHHTT---CSCHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCccH-HHHHHHHHc---CCCHHHHHHHHHHHHhhCCHH-HHHHHHHHHc---CCCHHHHHHHH
Confidence 344444444555555554332 222223332 234444444455555555432 2222222222 24445555555
Q ss_pred HHHHhhcChhhHHHHHHHhccCCCCchhhHHHHHHHhhccCChHHHHHHHHHHHhccccCChhhHHHHHHHHHhcCChhH
Q 044770 243 ILYGYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDK 322 (464)
Q Consensus 243 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~ 322 (464)
.++...++.+....+.+.+ . .++..+-...+.++.+.|..+ +...+..+.+ .++...-...+.++.+.+. .+
T Consensus 103 ~aL~~~~~~~~~~~L~~~l-~--d~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~---d~~~~vr~~a~~aL~~~~~-~~ 174 (211)
T 3ltm_A 103 VALGQIGDERAVEPLIKAL-K--DEDWFVRIAAAFALGEIGDER-AVEPLIKALK---DEDGWVRQSAADALGEIGG-ER 174 (211)
T ss_dssp HHHHHHCCGGGHHHHHHHT-T--CSSHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHHHHHHHHCS-HH
T ss_pred HHHHHhCcHHHHHHHHHHH-h--CCCHHHHHHHHHHHHHcCCHH-HHHHHHHHHc---CCCHHHHHHHHHHHHHhCc-hh
Confidence 5666655544333333322 2 222233334445555555433 3333333332 1444455555556665554 34
Q ss_pred HHHHHHHHHh
Q 044770 323 ASGLLKEMSM 332 (464)
Q Consensus 323 a~~~~~~m~~ 332 (464)
+...+..+.+
T Consensus 175 ~~~~L~~~l~ 184 (211)
T 3ltm_A 175 VRAAMEKLAE 184 (211)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 4444444443
No 327
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=40.08 E-value=1.2e+02 Score=22.82 Aligned_cols=57 Identities=11% Similarity=0.058 Sum_probs=40.0
Q ss_pred hhcCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHHHc--CCCCcHHHHHHHHHHHHHcC
Q 044770 373 KVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKA--NYTKYTFVYNTLIKAYVKAK 430 (464)
Q Consensus 373 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--~~~p~~~~~~~li~~~~~~g 430 (464)
...|.+++..= ..++..+...++.-.|.++++.+.+. +...+..|--.-+..+...|
T Consensus 25 ~~~g~r~T~qR-~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~G 83 (162)
T 4ets_A 25 RQGGLKYTKQR-EVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAE 83 (162)
T ss_dssp HHHTCCCCHHH-HHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTT
T ss_pred HHcCCCCCHHH-HHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCC
Confidence 44577766532 36677777788888999999999887 65556665444566777776
No 328
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=40.01 E-value=1.1e+02 Score=22.40 Aligned_cols=33 Identities=3% Similarity=-0.111 Sum_probs=13.3
Q ss_pred CChhHHHHHHHHHHhCCCCCcHhHHHHHHHHHH
Q 044770 179 HNIEGLMKVYSDMKRSEVEPNEVSYCILATAHA 211 (464)
Q Consensus 179 ~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~ 211 (464)
+..-.|.++++.+.+.+...+..|..-.+..+.
T Consensus 35 ~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~ 67 (145)
T 2fe3_A 35 MAHPTADDIYKALEGKFPNMSVATVYNNLRVFR 67 (145)
T ss_dssp SSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHH
Confidence 333444444444444433333333333333333
No 329
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=39.98 E-value=1.2e+02 Score=22.90 Aligned_cols=31 Identities=16% Similarity=0.250 Sum_probs=14.5
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHHcCCCC
Q 044770 384 TLSIIEIFAEKGDVGNAENLFEELKKANYTK 414 (464)
Q Consensus 384 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p 414 (464)
|......+-..|++.+|.++|+.-.+.+-.|
T Consensus 99 Y~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P 129 (164)
T 2wvi_A 99 YISWAEEYEARENFRKADAIFQEGIQQKAEP 129 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc
Confidence 4444444444455555555554444444444
No 330
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=39.79 E-value=2e+02 Score=29.25 Aligned_cols=108 Identities=9% Similarity=-0.047 Sum_probs=58.4
Q ss_pred HHHHHHhhcChHHHHHHhhhcCCCCCchhHHHHHHHHHHhhCcHHHHHHHHHHHHHcCCC--------------------
Q 044770 68 LLEFTIKNHGISQGEKLFCCIPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHS-------------------- 127 (464)
Q Consensus 68 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~-------------------- 127 (464)
++..+...|..+-|.++....+. +...--.+..+|...|++++|...|++.-. |+.
T Consensus 816 l~~~L~~~~~~~~a~eL~~~~~~---t~~~~yv~gr~~L~~ge~~~A~~~F~kAA~-gl~~~~~~~~~~~~~~~ll~~~e 891 (950)
T 4gq2_M 816 LVEKLFLFKQYNACMQLIGWLNS---DPIAVYLKALIYLKSKEAVKAVRCFKTTSL-VLYSHTSQFAVLREFQEIAEKYH 891 (950)
T ss_dssp HHHHHHHTTCHHHHHHHGGGCCS---SHHHHHHHHHHHHHTTCHHHHHHHHHTCCC-TTCSSCCSCGGGHHHHHHHHHTT
T ss_pred HHHHHHHhcHHHHHHHHHhhcCC---ChHHHHHHHHHHHHcCCHHHHHHHHHHHhh-hcccCcccccchhhhhhccCccc
Confidence 44445555555555555444443 222212344555556666666666654321 110
Q ss_pred ---CchhhHHHHHHHhcCCCCcccHHHHHHHHHhCCCCCCh----hhHHHHHHHHHccC
Q 044770 128 ---ISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHV----STFHILMKIEANDH 179 (464)
Q Consensus 128 ---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~ 179 (464)
....-|..++..+-+.+-++.+.++-+..++.--+.|. ..|+.+.++.+..|
T Consensus 892 ~~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~l~~~l~~r~f~~a~a~g 950 (950)
T 4gq2_M 892 HQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAG 950 (950)
T ss_dssp TCSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHHHHHHHHHHHHHHHHHHC
T ss_pred ccchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHhhCC
Confidence 11236778888888888888888877777764212222 35666666666544
No 331
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=39.74 E-value=1e+02 Score=22.15 Aligned_cols=33 Identities=9% Similarity=0.043 Sum_probs=14.5
Q ss_pred ChhHHHHHHHHHHhCCCCCcHhHHHHHHHHHHh
Q 044770 180 NIEGLMKVYSDMKRSEVEPNEVSYCILATAHAV 212 (464)
Q Consensus 180 ~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~ 212 (464)
..-.|.++++.+.+.+...+..|..-.+..+..
T Consensus 33 ~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e 65 (136)
T 1mzb_A 33 RHMSAEDVYKALMEAGEDVGLATVYRVLTQFEA 65 (136)
T ss_dssp CSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHH
Confidence 344455555555444433344443333333333
No 332
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=39.49 E-value=64 Score=23.11 Aligned_cols=49 Identities=16% Similarity=0.081 Sum_probs=37.9
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCCCccHHHHHHHHHHHHhcCChH
Q 044770 308 NSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVE 356 (464)
Q Consensus 308 ~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~ 356 (464)
..++..+...+..-.|.++++.+.+.+...+..|....+..+...|-+.
T Consensus 14 ~~Il~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~Glv~ 62 (131)
T 2o03_A 14 AAISTLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSGLVD 62 (131)
T ss_dssp HHHHHHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTTSEE
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCEE
Confidence 4456666666777889999999988877778888888888888877554
No 333
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=39.40 E-value=1.1e+02 Score=22.48 Aligned_cols=35 Identities=9% Similarity=-0.043 Sum_probs=16.2
Q ss_pred ChhHHHHHHHHHHhCCCCCcHhHHHHHHHHHHhcC
Q 044770 180 NIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVAR 214 (464)
Q Consensus 180 ~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~ 214 (464)
..-.|.++++.+.+.+...+..|..-.+..+...|
T Consensus 32 ~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 66 (150)
T 2w57_A 32 QHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAG 66 (150)
T ss_dssp SSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCC
Confidence 44445555555555444444444444444444433
No 334
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=38.30 E-value=1.4e+02 Score=25.80 Aligned_cols=18 Identities=6% Similarity=0.082 Sum_probs=8.3
Q ss_pred HHHHhhcChHHHHHHhhh
Q 044770 70 EFTIKNHGISQGEKLFCC 87 (464)
Q Consensus 70 ~~~~~~g~~~~a~~~~~~ 87 (464)
...+..|+.+-+..+++.
T Consensus 25 ~~Aa~~g~~~~v~~Ll~~ 42 (364)
T 3ljn_A 25 HVAARKGQTDEVRRLIET 42 (364)
T ss_dssp HHHHHHTCHHHHHHHHHT
T ss_pred HHHHHcCCHHHHHHHHHc
Confidence 333444555554444443
No 335
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=36.74 E-value=58 Score=23.69 Aligned_cols=50 Identities=12% Similarity=-0.017 Sum_probs=38.3
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCccHHHHHHHHHHHHhcCChH
Q 044770 307 YNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVE 356 (464)
Q Consensus 307 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~ 356 (464)
-..++..+...+..-.|.++++.+.+.+...+..|...-+..+...|-+.
T Consensus 16 R~~Il~~L~~~~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~Glv~ 65 (139)
T 3mwm_A 16 RAAVSAALQEVEEFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAGEVD 65 (139)
T ss_dssp HHHHHHHHTTCSSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSSE
T ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCCEE
Confidence 34566666666677789999999988887778888888888888877554
No 336
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=36.48 E-value=1.3e+02 Score=22.31 Aligned_cols=23 Identities=17% Similarity=0.115 Sum_probs=12.2
Q ss_pred HHHHHHHHhcChhhHHHHHHHHH
Q 044770 204 CILATAHAVARLYTVAETYVEAL 226 (464)
Q Consensus 204 ~~li~~~~~~~~~~~a~~~~~~~ 226 (464)
..++.-|...|+.++|...++++
T Consensus 13 ~~lL~EY~~~~D~~EA~~cl~EL 35 (152)
T 2ion_A 13 DMLLKEYLLSGDISEAEHCLKEL 35 (152)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHh
Confidence 34455555555555555555554
No 337
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=36.13 E-value=2.5e+02 Score=25.53 Aligned_cols=90 Identities=13% Similarity=0.023 Sum_probs=50.6
Q ss_pred HHHHHHHhhccCChHHHHHHHHHHHhccccCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCccHHHHHHHHHHHHh
Q 044770 272 YVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFK 351 (464)
Q Consensus 272 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 351 (464)
|..-.+.+...|++++|-++--.... |+..+..|.+.+-..-...|+..-.+.+|.-+.+.|- .+..---.+.+.-..
T Consensus 364 ~~~~F~~l~~~g~y~~AA~~aA~sP~-giLRt~~Ti~rFk~vp~~pgq~splL~YF~~Ll~~g~-Ln~~ESlEl~r~vL~ 441 (494)
T 1bpo_A 364 FARKFNALFAQGNYSEAAKVAANAPK-GILRTPDTIRRFQSVPAQPGQTSPLLQYFGILLDQGQ-LNKYESLELCRPVLQ 441 (494)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHSGG-GSSCSHHHHHHHTTSCCCTTSCCHHHHHHHHHHHHSC-CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHhCcc-ccccCHHHHHHHhcCCCCCCCCCHHHHHHHHHhccCc-cchHHhhHHhHHHHh
Confidence 43444556666777777776665555 5555666666555544455666667777777776653 343322334444445
Q ss_pred cCChHHHHHHHH
Q 044770 352 SNLVEEGFKALE 363 (464)
Q Consensus 352 ~~~~~~a~~~~~ 363 (464)
+|+.+-....+.
T Consensus 442 q~r~~llekWl~ 453 (494)
T 1bpo_A 442 QGRKQLLEKWLK 453 (494)
T ss_dssp TTCHHHHHHHHH
T ss_pred ccHHHHHHHHHh
Confidence 555555444443
No 338
>3l6a_A Eukaryotic translation initiation factor 4 gamma; C-terminal region, MA2 domain, W2 domain, EIF4G2, EIF family translation; HET: MES PG4; 2.00A {Homo sapiens}
Probab=34.94 E-value=2.3e+02 Score=24.75 Aligned_cols=25 Identities=0% Similarity=-0.098 Sum_probs=15.9
Q ss_pred HHHHHHHHhhcChHHHHHHhhhcCC
Q 044770 66 SYLLEFTIKNHGISQGEKLFCCIPK 90 (464)
Q Consensus 66 ~~l~~~~~~~g~~~~a~~~~~~~~~ 90 (464)
..++.-|...|+.++|...++++..
T Consensus 16 ~~ii~EY~~~~D~~Ea~~~l~eL~~ 40 (364)
T 3l6a_A 16 ETVVTEYLNSGNANEAVNGVREMRA 40 (364)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHTC
T ss_pred HHHHHHHHhCCCHHHHHHHHHHhCC
Confidence 4555666666666677666666654
No 339
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=34.80 E-value=95 Score=26.83 Aligned_cols=91 Identities=9% Similarity=-0.007 Sum_probs=43.3
Q ss_pred HHHHHHHHhhcchHHHHHHHHHHHHcCCCCCCchh--HHHHHHHHHhhcChHHHHHHhhhcCCCCCchhHHHHHHHHHHh
Q 044770 30 FHSINRLRKLQLNKRALEVMEWVIRERPYRPKELD--YSYLLEFTIKNHGISQGEKLFCCIPKDYQNELLYNNLVIACLD 107 (464)
Q Consensus 30 ~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~li~~~~~ 107 (464)
...+...+..|+.+....+++ .|..++... -.+.+...+..|+.+-+.-+++.-... .+..-++ .+...+.
T Consensus 21 ~t~L~~Aa~~g~~~~v~~Ll~-----~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~g~t-~L~~A~~ 93 (364)
T 3ljn_A 21 MEKIHVAARKGQTDEVRRLIE-----TGVSPTIQNRFGCTALHLACKFGCVDTAKYLASVGEVH-SLWHGQK-PIHLAVM 93 (364)
T ss_dssp HHHHHHHHHHTCHHHHHHHHH-----TTCCTTCCCTTCCCHHHHHHHHCCHHHHHHHHHHCCCC-CCBTTBC-HHHHHHH
T ss_pred CCHHHHHHHcCCHHHHHHHHH-----cCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCc-cccCCCC-HHHHHHH
Confidence 344555566677655554443 233333221 223445555667777666666654432 1111112 2333345
Q ss_pred hCcHHHHHHHHHHHHHcCCC
Q 044770 108 KGVIKLSLEYMKKMRVLGHS 127 (464)
Q Consensus 108 ~~~~~~a~~~~~~m~~~~~~ 127 (464)
.|+.+-+..+++.....|..
T Consensus 94 ~g~~~~v~~Ll~~~~~~~~~ 113 (364)
T 3ljn_A 94 ANKTDLVVALVEGAKERGQM 113 (364)
T ss_dssp TTCHHHHHHHHHHHHHHTCC
T ss_pred cCCHHHHHHHHHhccccCCC
Confidence 56666555555554444443
No 340
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=34.68 E-value=1.6e+02 Score=22.99 Aligned_cols=58 Identities=9% Similarity=0.033 Sum_probs=33.2
Q ss_pred ccCChhHHHHHHHHHHhCCCCCcHhHHHHHHHHHHhcChh-----hHHHHHHHHHHhccCCCCh
Q 044770 177 NDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLY-----TVAETYVEALEKSMTGNNW 235 (464)
Q Consensus 177 ~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~-----~~a~~~~~~~~~~~~~~~~ 235 (464)
+..+++.|+-.+-+|.+.| .|.-..-..++.+.-..|.- ..|...++.....|.+-..
T Consensus 26 RGSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~PE~~ 88 (204)
T 2r9g_A 26 RGSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIGLGNPAAAARTVNAVLAAEKLGLPEAR 88 (204)
T ss_dssp HTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTGGGCHHHHHHHHHHHHHHHHHCTTTTH
T ss_pred hcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCCCHHH
Confidence 4567778888888888877 65555555555555444432 2344444444555554433
No 341
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=33.22 E-value=1.7e+02 Score=22.84 Aligned_cols=44 Identities=23% Similarity=0.295 Sum_probs=29.5
Q ss_pred HHHHHHH---hcCChhHHHHHHHHHHhCCCCccHHHHHHHHHHHHhcC
Q 044770 309 SVISVYC---KNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSN 353 (464)
Q Consensus 309 ~li~~~~---~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~ 353 (464)
-+|+++. +-.+.+.|+-.+.+|++.| .|....-..++.+....|
T Consensus 16 d~iSAf~KSiRGSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIG 62 (204)
T 2r9g_A 16 DVISAFQKSIRGSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIG 62 (204)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTG
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhcc
Confidence 3455554 4478888888888888888 666655555555555544
No 342
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=33.02 E-value=2.4e+02 Score=24.32 Aligned_cols=23 Identities=17% Similarity=0.312 Sum_probs=14.0
Q ss_pred HHHHHHHHHhcCChhhHHHHHHH
Q 044770 384 TLSIIEIFAEKGDVGNAENLFEE 406 (464)
Q Consensus 384 ~~~li~~~~~~g~~~~A~~~~~~ 406 (464)
...++..+.+....+.+.++|.+
T Consensus 144 l~~vl~~l~~~~g~~~l~~~~~~ 166 (339)
T 1ug3_A 144 LLEILGLLCKSMGPKKVGTLWRE 166 (339)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCHHHHHHHHHH
Confidence 34555666666666666666653
No 343
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=32.80 E-value=1.8e+02 Score=22.76 Aligned_cols=38 Identities=16% Similarity=0.136 Sum_probs=22.0
Q ss_pred ccCChhHHHHHHHHHHhCCCCCcHhHHHHHHHHHHhcC
Q 044770 177 NDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVAR 214 (464)
Q Consensus 177 ~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~ 214 (464)
+..+++.|+-.+-+|.+.|-.|.-..-..++.+.-..|
T Consensus 19 RGSDpDAAly~LaRMl~~GEDp~~IaRRLvi~AsEDIG 56 (201)
T 3bge_A 19 RGSAPDAALYWYARILTAGGDPLYVARRLLAIASEDVG 56 (201)
T ss_dssp HTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTG
T ss_pred hCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhcc
Confidence 35667777777777777765555444444444444333
No 344
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=31.43 E-value=1.4e+02 Score=21.27 Aligned_cols=23 Identities=17% Similarity=0.115 Sum_probs=11.3
Q ss_pred HHHHHHHHhcChhhHHHHHHHHH
Q 044770 204 CILATAHAVARLYTVAETYVEAL 226 (464)
Q Consensus 204 ~~li~~~~~~~~~~~a~~~~~~~ 226 (464)
..++.-|...|+.++|...++++
T Consensus 11 ~~ll~EY~~~~D~~Ea~~cl~eL 33 (129)
T 2nsz_A 11 DMLLKEYLLSGDISEAEHCLKEL 33 (129)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHh
Confidence 33444455555555555555444
No 345
>2keb_A DNA polymerase subunit alpha B; DNA polymerase alpha, DNA replication, nucleus, phosphoprote binding protein; HET: DNA; NMR {Homo sapiens}
Probab=30.30 E-value=1.3e+02 Score=20.33 Aligned_cols=62 Identities=15% Similarity=0.038 Sum_probs=37.8
Q ss_pred HHHHHHHHHHhCCCCccHHHHHHHHHHHHhcCChHHHHHHHHHhHHHHhhhhhcCCCCcHHHHHHH
Q 044770 322 KASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSI 387 (464)
Q Consensus 322 ~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~p~~~~~~~l 387 (464)
.|..+.+++...|+.|+.....-++..|..-+- + +.++.++-+.... ...+..|+....+.+
T Consensus 27 sae~L~eEfdefGi~~~d~VldKc~ELC~~y~l-d-a~e~VeeWmAFst--s~~g~~pT~enL~~F 88 (101)
T 2keb_A 27 SAQQLAEELQIFGLDCEEALIEKLVELCVQYGQ-N-EEGMVGELIAFCT--STHKVGLTSEILNSF 88 (101)
T ss_dssp CHHHHHHHHHHHTCBCCHHHHHHHHHHHHHHTC-C-HHHHHHHHHHHHH--HHTCSBCCHHHHHHH
T ss_pred cHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC-C-HHHHHHHHHHHHH--hcCCCCCCHHHHHHH
Confidence 456677777777888888777777777766653 2 4444444433322 244777776654443
No 346
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=30.16 E-value=1.1e+02 Score=19.46 Aligned_cols=12 Identities=8% Similarity=0.171 Sum_probs=4.9
Q ss_pred HHHHHHHHHHhC
Q 044770 183 GLMKVYSDMKRS 194 (464)
Q Consensus 183 ~a~~~~~~m~~~ 194 (464)
.+.++++.+.+.
T Consensus 35 s~~el~~~l~~~ 46 (83)
T 2fu4_A 35 SAEDLYKRLIDM 46 (83)
T ss_dssp CHHHHHHHHHHT
T ss_pred CHHHHHHHHHHh
Confidence 344444444333
No 347
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=30.02 E-value=93 Score=22.57 Aligned_cols=41 Identities=5% Similarity=-0.126 Sum_probs=16.9
Q ss_pred HHHHHccCChhHHHHHHHHHHhCCCCCcHhHHHHHHHHHHh
Q 044770 172 MKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAV 212 (464)
Q Consensus 172 ~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~ 212 (464)
++.+...+..-.|.++++.+.+.+...+..|..-.+..+..
T Consensus 20 l~~L~~~~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e 60 (139)
T 3mwm_A 20 SAALQEVEEFRSAQELHDMLKHKGDAVGLTTVYRTLQSLAD 60 (139)
T ss_dssp HHHHTTCSSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHH
T ss_pred HHHHHhCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHH
Confidence 33333333344444444444444433344443333333333
No 348
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=29.99 E-value=1.2e+02 Score=21.72 Aligned_cols=45 Identities=13% Similarity=0.184 Sum_probs=33.2
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHHcCCCCcHHHHHHHHHHHHHcC
Q 044770 386 SIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAK 430 (464)
Q Consensus 386 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g 430 (464)
.++..+...+..-.|.++++.+.+.+...+..|--..++.+...|
T Consensus 15 ~Il~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 59 (131)
T 2o03_A 15 AISTLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSG 59 (131)
T ss_dssp HHHHHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTT
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC
Confidence 566667777778889999999988765566665555677777766
No 349
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=29.75 E-value=70 Score=25.88 Aligned_cols=17 Identities=6% Similarity=-0.216 Sum_probs=7.8
Q ss_pred HHHHhhcChHHHHHHhh
Q 044770 70 EFTIKNHGISQGEKLFC 86 (464)
Q Consensus 70 ~~~~~~g~~~~a~~~~~ 86 (464)
...+..|+.+....+++
T Consensus 7 ~~A~~~g~~~~v~~ll~ 23 (256)
T 2etb_A 7 FSVVSRGVPEELTGLLE 23 (256)
T ss_dssp HHHHHHTCGGGGTTHHH
T ss_pred HHHHHcCCHHHHHHHHH
Confidence 33445555554444443
No 350
>4fke_A Aminopeptidase N; zinc aminopeptidase, hydrolase; HET: NAG; 1.85A {Sus scrofa} PDB: 4fkh_A* 4fkk_A* 4fkn_A* 4fkf_A* 4f5c_A* 4fyt_A* 4fyr_A* 4fys_A* 4fyq_A*
Probab=29.46 E-value=4.5e+02 Score=26.48 Aligned_cols=159 Identities=9% Similarity=-0.015 Sum_probs=0.0
Q ss_pred HHHHHHHHhcChh---hHHHHHHHHHHhc--cCCCChhhHHHHHHHHHhhcChhhHHHHHHHhccCCCCchhhHHHHHHH
Q 044770 204 CILATAHAVARLY---TVAETYVEALEKS--MTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSKSYVLAIEA 278 (464)
Q Consensus 204 ~~li~~~~~~~~~---~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 278 (464)
..++...|..|.. +.|.+.|+..... +.+.++..-..+...-.+.|..++-..+++.......... -..++.+
T Consensus 690 ~~~l~~ac~~g~~~c~~~a~~~f~~~~~~~~~~~i~~dlr~~vy~~~~~~g~~~~~~~l~~~~~~~~~~~e--k~~ll~a 767 (909)
T 4fke_A 690 INAISTACSNGLPQCENLAKTLFDQWMSDPENNPIHPNLRSTIYCNAIAQGGQDQWDFAWGQLQQAQLVNE--ADKLRSA 767 (909)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHTCTTSCCSCTTTHHHHHHHHHHHSCHHHHHHHHHHHHHCCSHHH--HHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHhhCCCCCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHccCCHHH--HHHHHHH
Q ss_pred hhccCChHHHHHHHHHHHhccccCChhhHHHHHHHHHhcCChhHHHHHHHH---HHhCCCCccHHHHHHHHHHHHhcCCh
Q 044770 279 FGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKE---MSMNGCKPNAITYRHLALGCFKSNLV 355 (464)
Q Consensus 279 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~---m~~~g~~p~~~~~~~ll~~~~~~~~~ 355 (464)
++...+.+...++++................+..........+.|.+.+.+ .+..........+..++......-.-
T Consensus 768 L~~~~d~~~l~~~L~~~l~~~~ir~qd~~~~~~~v~~n~~g~~~~~~f~~~n~~~l~~~~~~~~~~~~~~i~~~~~~~~t 847 (909)
T 4fke_A 768 LACSNEVWLLNRYLGYTLNPDLIRKQDATSTINSIASNVIGQPLAWDFVQSNWKKLFQDYGGGSFSFSNLIQGVTRRFSS 847 (909)
T ss_dssp HTTCCCHHHHHHHHHHTTCTTTSCGGGHHHHHHHHHHSTTHHHHHHHHHHHHCTTTTTSSSSCCCCHHHHHHHHHTTCCS
T ss_pred hCCCCCHHHHHHHHHHHhCCCCCchhhHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhcCC
Q ss_pred HHHHHHHHH
Q 044770 356 EEGFKALEL 364 (464)
Q Consensus 356 ~~a~~~~~~ 364 (464)
++-.+-++.
T Consensus 848 ~~~~~~~~~ 856 (909)
T 4fke_A 848 EFELQQLEQ 856 (909)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
No 351
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*
Probab=29.22 E-value=1.2e+02 Score=22.20 Aligned_cols=19 Identities=21% Similarity=0.104 Sum_probs=10.0
Q ss_pred HHHHHhhcChHHHHHHhhh
Q 044770 69 LEFTIKNHGISQGEKLFCC 87 (464)
Q Consensus 69 ~~~~~~~g~~~~a~~~~~~ 87 (464)
+...++.|+.+....+++.
T Consensus 12 l~~A~~~g~~~~v~~ll~~ 30 (165)
T 3twr_A 12 LLEAAKAGDVETVKKLCTV 30 (165)
T ss_dssp HHHHHHHTCHHHHHHHCCT
T ss_pred HHHHHHhCCHHHHHHHHHc
Confidence 3344455666655555543
No 352
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=29.19 E-value=4.7e+02 Score=26.55 Aligned_cols=51 Identities=12% Similarity=0.035 Sum_probs=33.7
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCccHHHHHHHHHHHHhcCChHHHHHHHHHh
Q 044770 310 VISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELG 365 (464)
Q Consensus 310 li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 365 (464)
++..+...|.++-+.++..- .+-++..--.+..+|...|++++|.+.|+++
T Consensus 816 l~~~L~~~~~~~~a~eL~~~-----~~~t~~~~yv~gr~~L~~ge~~~A~~~F~kA 866 (950)
T 4gq2_M 816 LVEKLFLFKQYNACMQLIGW-----LNSDPIAVYLKALIYLKSKEAVKAVRCFKTT 866 (950)
T ss_dssp HHHHHHHTTCHHHHHHHGGG-----CCSSHHHHHHHHHHHHHTTCHHHHHHHHHTC
T ss_pred HHHHHHHhcHHHHHHHHHhh-----cCCChHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 56666777777655543322 2224433334566788999999999999987
No 353
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=28.23 E-value=3.1e+02 Score=24.92 Aligned_cols=35 Identities=14% Similarity=0.103 Sum_probs=18.1
Q ss_pred CCCCCCchhHHHHHHHHHhhcChHHHHHHhhhcCC
Q 044770 56 RPYRPKELDYSYLLEFTIKNHGISQGEKLFCCIPK 90 (464)
Q Consensus 56 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 90 (464)
.|++-....|..-.+.+...|++++|.++--..+.
T Consensus 355 ~~LpGAd~L~~~~F~~l~~~g~y~~AA~~aA~sP~ 389 (494)
T 1bpo_A 355 NNLAGAEELFARKFNALFAQGNYSEAAKVAANAPK 389 (494)
T ss_dssp TTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSGG
T ss_pred cCCccHHHHHHHHHHHHHHcCCHHHHHHHHHhCcc
Confidence 44444444455555555555666655555554443
No 354
>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2
Probab=27.28 E-value=2.3e+02 Score=22.37 Aligned_cols=64 Identities=13% Similarity=0.144 Sum_probs=38.4
Q ss_pred HHHHHH---ccCChhHHHHHHHHHHhCCCCCcHhHHHHHHHHHHhcChh-----hHHHHHHHHHHhccCCCC
Q 044770 171 LMKIEA---NDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLY-----TVAETYVEALEKSMTGNN 234 (464)
Q Consensus 171 l~~~~~---~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~-----~~a~~~~~~~~~~~~~~~ 234 (464)
+|+++. +..+++.|+-.+-+|.+.|-.|.-..-..++.+.-..|.- ..|...++.....|.+-.
T Consensus 38 ~ISAf~KSiRGSDpDAALywLaRMl~~GEDp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~PE~ 109 (213)
T 3ctd_A 38 VISAFIKSIRGSDPDATLYWLANMVEAGEDPNFIFRRLLISACEDIGLADPNAIVVVQSCCDAFDRVGFPEG 109 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGSTTHHHHHHHHHHHHHHHCTTTT
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCCCHH
Confidence 455544 4577888888888888888776665555556555544432 234444455555555433
No 355
>4b4t_O 26S proteasome regulatory subunit RPN9; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=27.19 E-value=3.3e+02 Score=24.07 Aligned_cols=58 Identities=14% Similarity=-0.075 Sum_probs=32.8
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHhHHHHhhhhhcCCCC--cHHHHHHHHHHHHhcCChhhHH
Q 044770 342 YRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTP--WLETTLSIIEIFAEKGDVGNAE 401 (464)
Q Consensus 342 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~p--~~~~~~~li~~~~~~g~~~~A~ 401 (464)
...+...+...++.+.|..+++.+...... ..+..| ....|......|...+++..+.
T Consensus 130 ~~~i~~~yl~~~d~~~a~~~l~~~~~~l~~--~~~~~~~v~~~~y~~~~~~~~~~~~~a~~y 189 (393)
T 4b4t_O 130 DSEIARTYLLKNDLVKARDLLDDLEKTLDK--KDSIPLRITNSFYSTNSQYFKFKNDFNSFY 189 (393)
T ss_dssp HHHHHHHHHHHSCHHHHHHHHHHHHHHHHH--SCCSSSHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhhhc--cCCccHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 344555566777888887777777543332 123333 2334555666666666665543
No 356
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=26.84 E-value=76 Score=23.02 Aligned_cols=17 Identities=0% Similarity=-0.173 Sum_probs=8.0
Q ss_pred HHHhhcchHHHHHHHHH
Q 044770 35 RLRKLQLNKRALEVMEW 51 (464)
Q Consensus 35 ~~~~~~~~~~A~~~~~~ 51 (464)
..+..|+.+....+++.
T Consensus 8 ~A~~~g~~~~v~~ll~~ 24 (156)
T 1bd8_A 8 GAAARGDVQEVRRLLHR 24 (156)
T ss_dssp HHHHHTCHHHHHHHHHT
T ss_pred HHHHhCCHHHHHHHHHh
Confidence 33444555554444443
No 357
>2f6m_A Suppressor protein STP22 of temperature-sensitive factor receptor and arginine permease...; endosomes, trafficking complex, vacuole protei sorting, ESCRT protein complexes; HET: DDQ; 2.10A {Saccharomyces cerevisiae} SCOP: a.2.17.1 PDB: 2f66_A*
Probab=26.81 E-value=1.1e+02 Score=18.71 Aligned_cols=44 Identities=16% Similarity=0.049 Sum_probs=29.1
Q ss_pred HHHHHHHHHHhhCcHHHHHHHHHHHHHcCCCCchhhHHHHHHHhc
Q 044770 97 LYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNS 141 (464)
Q Consensus 97 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~ 141 (464)
.++.++..++...-.++++..+++..+.| ..+..+|-.-.+.++
T Consensus 4 l~~Qll~l~Aed~AieDaiy~L~~aL~~g-~I~l~~ylK~vR~La 47 (65)
T 2f6m_A 4 GLNQLYNLVAQDYALTDTIEALSRMLHRG-TIPLDTFVKQGRELA 47 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHT-SSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHH
Confidence 45666777777777778888888887777 345666655555443
No 358
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A
Probab=26.31 E-value=1.3e+02 Score=23.55 Aligned_cols=15 Identities=7% Similarity=0.067 Sum_probs=6.7
Q ss_pred HhhcChHHHHHHhhh
Q 044770 73 IKNHGISQGEKLFCC 87 (464)
Q Consensus 73 ~~~g~~~~a~~~~~~ 87 (464)
+..|+.+.+..+++.
T Consensus 10 ~~~g~~~~v~~Ll~~ 24 (228)
T 2dzn_A 10 CMENEFFKVQELLHS 24 (228)
T ss_dssp HHTTCHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHhc
Confidence 344444444444443
No 359
>1q02_A Sequestosome 1; helical bundle, protein binding; NMR {Homo sapiens} SCOP: a.5.2.1 PDB: 2jy7_A 2jy8_A 2k0b_X 2knv_A 2rru_A 3b0f_A
Probab=26.28 E-value=93 Score=17.98 Aligned_cols=38 Identities=16% Similarity=0.155 Sum_probs=19.1
Q ss_pred cchhhHHHHhhcCccChhchHHHHHHHHhhcchHHHHHHH
Q 044770 10 VGSAFQSWMREGFPVHRGEIFHSINRLRKLQLNKRALEVM 49 (464)
Q Consensus 10 ~~~~l~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~A~~~~ 49 (464)
+.+.+..|..-|+.-...=+..++.. +.|+...|++++
T Consensus 10 l~~al~qMl~MGF~negGWLt~LL~~--k~gDI~~aLD~l 47 (52)
T 1q02_A 10 LIESLSQMLSMGFSDEGGWLTRLLQT--KNYDIGAALDTI 47 (52)
T ss_dssp HHHHHHHHHTTTCCCTTSHHHHHHHH--TTTCHHHHHHHH
T ss_pred HHHHHHHHHHcCCCccccHHHHHHHH--ccCCHHHHHHHh
Confidence 44555555555665433333444433 455555555544
No 360
>1s6c_A KV4 potassium channel-interacting protein kchip1B; EF-hand, transport protein; 2.00A {Rattus norvegicus} SCOP: a.39.1.5 PDB: 2nz0_A 2i2r_E
Probab=25.94 E-value=2.1e+02 Score=21.35 Aligned_cols=43 Identities=14% Similarity=0.372 Sum_probs=26.4
Q ss_pred ccHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhHHHHHHHHH
Q 044770 147 KTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDM 191 (464)
Q Consensus 147 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m 191 (464)
+.+..+|+.+-..| ....+|.-++..+.+...+-+.+..|+.+
T Consensus 140 ~~~~~~f~~~D~d~--dG~i~~~Ef~~~~~~~~~~~~~l~~~d~~ 182 (183)
T 1s6c_A 140 QHVDVFFQKMDKNK--DGIVTLDEFLESXQEDDNIMRSLQLFQNV 182 (183)
T ss_dssp HHHHHHHHHHCTTC--SSEECHHHHHHHTTSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCC--CCcEeHHHHHHHHhcChHHHHHHHHhhcc
Confidence 44566666664322 33567777777777666666677666653
No 361
>1oai_A Nuclear RNA export factor; nuclear transport, nuclear transport factor; 1.0A {Homo sapiens} SCOP: a.5.2.3
Probab=25.51 E-value=53 Score=19.71 Aligned_cols=24 Identities=4% Similarity=-0.121 Sum_probs=18.7
Q ss_pred hcchHHHHHHHHHHHHcCCCCCCc
Q 044770 39 LQLNKRALEVMEWVIRERPYRPKE 62 (464)
Q Consensus 39 ~~~~~~A~~~~~~~~~~~~~~~~~ 62 (464)
.-+++.|+..|..+...+.++|+.
T Consensus 33 ~Wd~~~A~~~F~~l~~~~~IP~eA 56 (59)
T 1oai_A 33 NWDYTRSAQAFTHLKAKGEIPEVA 56 (59)
T ss_dssp TTCHHHHHHHHHHHHHTTCSCGGG
T ss_pred CCCHHHHHHHHHHHHHcCCCCHHH
Confidence 457889999999998766676654
No 362
>4fjo_A DNA repair protein REV1; translesion synthesis, transferase -DNA binding protein COMP transferase-DNA binding protein complex; HET: DNA; 2.72A {Mus musculus} PDB: 2lsg_A* 2lsk_A* 2lsy_A*
Probab=25.00 E-value=89 Score=21.03 Aligned_cols=46 Identities=13% Similarity=0.171 Sum_probs=29.5
Q ss_pred CcchhhHHHHhhcCccChhchHH---HHHHHHhhcchHHHHHHHHHHHH
Q 044770 9 PVGSAFQSWMREGFPVHRGEIFH---SINRLRKLQLNKRALEVMEWVIR 54 (464)
Q Consensus 9 ~~~~~l~~~~~~g~~~~~~~~~~---~l~~~~~~~~~~~A~~~~~~~~~ 54 (464)
++..++..|....-.|.+..... .+..+...++.+.+..+++++.+
T Consensus 13 dvr~~l~~Wv~~~~~P~~~DV~~l~~yL~~lv~~~~lek~~~vlk~l~r 61 (97)
T 4fjo_A 13 DVKTLLKEWITTISDPMEEDILQVVRYCTDLIEEKDLEKLDLVIKYMKR 61 (97)
T ss_dssp HHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHhhccCHHHHHHHHHHHHH
Confidence 45667777877755565555444 44455567778887777766644
No 363
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=24.73 E-value=2.5e+02 Score=21.92 Aligned_cols=44 Identities=20% Similarity=0.175 Sum_probs=26.6
Q ss_pred HHHHHH---hcCChhHHHHHHHHHHhCCCCccHHHHHHHHHHHHhcC
Q 044770 310 VISVYC---KNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSN 353 (464)
Q Consensus 310 li~~~~---~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~ 353 (464)
+|+++. +-.+.+.|+-.+.+|++.|-.|....-..++-+....|
T Consensus 10 ~ISAf~KSiRGSDpDAAly~LaRMl~~GEDp~~IaRRLvi~AsEDIG 56 (201)
T 3bge_A 10 LISALHKSVRGSAPDAALYWYARILTAGGDPLYVARRLLAIASEDVG 56 (201)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTG
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhcc
Confidence 444443 34677777777777777776666555555555444433
No 364
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=23.83 E-value=2.2e+02 Score=20.89 Aligned_cols=57 Identities=7% Similarity=0.085 Sum_probs=36.8
Q ss_pred hhcCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCcHHHHHHHHHHHHHcC
Q 044770 373 KVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAK 430 (464)
Q Consensus 373 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g 430 (464)
...|.+++..= ..++..+...+..-.|.++++.+.+.+...+..|.-.-+..+...|
T Consensus 19 ~~~g~r~T~qR-~~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 75 (150)
T 2xig_A 19 KKNGLKNSKQR-EEVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKEN 75 (150)
T ss_dssp HHCC--CHHHH-HHHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTT
T ss_pred HHcCCCCCHHH-HHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC
Confidence 44566665432 3566666667778888899988887765566665555566676666
No 365
>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2
Probab=23.52 E-value=2.7e+02 Score=21.95 Aligned_cols=46 Identities=28% Similarity=0.258 Sum_probs=30.7
Q ss_pred HHHHHHHH---hcCChhHHHHHHHHHHhCCCCccHHHHHHHHHHHHhcC
Q 044770 308 NSVISVYC---KNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSN 353 (464)
Q Consensus 308 ~~li~~~~---~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~ 353 (464)
--+|+++. +-.+.+.|+-++.+|++.|-.|....-..++-+...-|
T Consensus 36 Yd~ISAf~KSiRGSDpDAALywLaRMl~~GEDp~~IaRRLvi~AsEDIG 84 (213)
T 3ctd_A 36 FDVISAFIKSIRGSDPDATLYWLANMVEAGEDPNFIFRRLLISACEDIG 84 (213)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTG
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhcc
Confidence 33555554 34678888888888888887776666566666555544
No 366
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=23.39 E-value=2.9e+02 Score=22.11 Aligned_cols=84 Identities=11% Similarity=0.029 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHhCCCCccHHHHHHHHHHHHhcCChHHHHHHHHHhHHHHhhhhhcCCCCcHHHHHHHHHHHHhcCChhh
Q 044770 320 IDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGN 399 (464)
Q Consensus 320 ~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~ 399 (464)
++.+...|..-.. ..-|..-....+...-.+.+..+...++..- .-..-....|......+...|++.+
T Consensus 100 LErc~~~F~~~~r--YknD~RyLklWl~Ya~~~~~p~~if~~L~~~---------~IG~~~AlfYe~wA~~lE~~g~~~~ 168 (223)
T 4aez_C 100 LERCTREFVRNPL--YKDDVRYLRIWMQYVNYIDEPVELFSFLAHH---------HIGQESSIFYEEYANYFESRGLFQK 168 (223)
T ss_dssp HHHHHHHTTTCGG--GTTCHHHHHHHHHHHTTCSCHHHHHHHHHHT---------TCSTTBHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHhccccc--ccCCHHHHHHHHHHHHccCCHHHHHHHHHHC---------CcchhHHHHHHHHHHHHHHcCCHHH
Q ss_pred HHHHHHHHHHcCCCC
Q 044770 400 AENLFEELKKANYTK 414 (464)
Q Consensus 400 A~~~~~~m~~~~~~p 414 (464)
|..+|+.-.+.+-.|
T Consensus 169 A~~Vy~~Gi~~~A~P 183 (223)
T 4aez_C 169 ADEVYQKGKRMKAKP 183 (223)
T ss_dssp HHHHHHHHHHHTCBS
T ss_pred HHHHHHHHHHcCCcc
No 367
>2ko4_A Mediator of RNA polymerase II transcription subun; GAL11, mediator, activator, CO-activator, MED15, trans nucleus, phosphoprotein, transcription regulation; NMR {Saccharomyces cerevisiae} PDB: 2lpb_A
Probab=22.73 E-value=94 Score=19.88 Aligned_cols=40 Identities=18% Similarity=0.161 Sum_probs=22.8
Q ss_pred HHHhhhcCCCCCchhHHHHHHHHHHhhCcHHHHHHHHHHH
Q 044770 82 EKLFCCIPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKM 121 (464)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m 121 (464)
..++.+++..+|++.+|+-+...+-+..-..++..+..++
T Consensus 23 ~~LL~kIPnLPpgVnTW~qI~el~qkk~i~~~~m~iik~i 62 (81)
T 2ko4_A 23 KQLLQRIPNIPPNINTWQQVTALAQQKLLTPQDMEAAKEV 62 (81)
T ss_dssp HHHHTTSSSCCTTTCBHHHHHHHHTTTSSCHHHHHHHHHH
T ss_pred HHHHhhCCCCCCCcchHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 3456666666667777777666555444444444444433
No 368
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}
Probab=22.67 E-value=3.4e+02 Score=22.75 Aligned_cols=16 Identities=6% Similarity=-0.060 Sum_probs=7.8
Q ss_pred HHhhcChHHHHHHhhh
Q 044770 72 TIKNHGISQGEKLFCC 87 (464)
Q Consensus 72 ~~~~g~~~~a~~~~~~ 87 (464)
.++.|+.+....++..
T Consensus 31 A~~~g~~~~v~~ll~~ 46 (351)
T 3utm_A 31 AARSGNEEKLMALLTP 46 (351)
T ss_dssp HHHHTCHHHHHHHCCT
T ss_pred HHHcCCHHHHHHHHHh
Confidence 3345555555555443
No 369
>1wty_A Hypothetical protein TTHA0048; structural genomics, riken structural genomics/proteomics in RSGI, unknown function; 2.20A {Thermus thermophilus} SCOP: a.24.16.2 PDB: 2ywa_A
Probab=22.64 E-value=2e+02 Score=20.05 Aligned_cols=69 Identities=4% Similarity=-0.136 Sum_probs=33.7
Q ss_pred ChhHHHHHHHHHHhCCCCCcHhHHHHHHHHHHhcChhhHHHHHHHHHHh-ccCCCChhhHHHHHHHHHhhcChhhH
Q 044770 180 NIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEK-SMTGNNWSTLDVLIILYGYLAKGKDL 254 (464)
Q Consensus 180 ~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a 254 (464)
.+.+|+.-+++.... .+|......++..+-. -++.++++.+.... .|. .+.++...+....+.|-.+..
T Consensus 3 ~~~~al~~L~e~~~~--~~~~~~~dg~i~~fe~--t~Elawk~~k~~l~~~g~--~~~s~rd~~r~a~~~glI~~~ 72 (119)
T 1wty_A 3 SLARAVERLKAALER--PKDEFIRDSAIQRFEF--TFELAWKTLKTFLELQGL--EARSPRAAIRGAFQVGLLPED 72 (119)
T ss_dssp CHHHHHHHHHHHHSS--CCCHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHTC--CCSSHHHHHHHHHHHTSSCCC
T ss_pred HHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHH--HHHHHHHHHHHHHHHcCC--CCCCHHHHHHHHHHcCCCCcH
Confidence 345556666655443 3344444444444322 23444555544433 344 355556666666666655443
No 370
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=22.52 E-value=2.6e+02 Score=21.27 Aligned_cols=92 Identities=12% Similarity=-0.060 Sum_probs=39.2
Q ss_pred CChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCccHHHHHHHHHHHHhcCChHHHHHHHHHhHHHHhhhhhcCCCCcH
Q 044770 302 KATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWL 381 (464)
Q Consensus 302 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~p~~ 381 (464)
++...-...+.++.+.+..+ +...+..+.. .++...-...+.++...++.+ +...+..++ ..++.
T Consensus 88 ~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~---d~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l----------~d~~~ 152 (201)
T 3ltj_A 88 EDGWVRQSAAVALGQIGDER-AVEPLIKALK---DEDWFVRIAAAFALGEIGDER-AVEPLIKAL----------KDEDG 152 (201)
T ss_dssp SSHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHHHHHHHHTCGG-GHHHHHHHT----------TCSSH
T ss_pred CCHHHHHHHHHHHHHhCcHH-HHHHHHHHHc---CCCHHHHHHHHHHHHHhCCHH-HHHHHHHHH----------cCCCH
Confidence 34444444555555555432 3333333332 234444444455555555432 222232221 12344
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHHHH
Q 044770 382 ETTLSIIEIFAEKGDVGNAENLFEELKK 409 (464)
Q Consensus 382 ~~~~~li~~~~~~g~~~~A~~~~~~m~~ 409 (464)
.+-...+.++.+.|.. ++...+..+.+
T Consensus 153 ~vr~~A~~aL~~~~~~-~~~~~L~~~l~ 179 (201)
T 3ltj_A 153 WVRQSAADALGEIGGE-RVRAAMEKLAE 179 (201)
T ss_dssp HHHHHHHHHHHHHCSH-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCch-hHHHHHHHHHh
Confidence 4444555555555542 34444444443
No 371
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=22.30 E-value=1.4e+02 Score=19.91 Aligned_cols=34 Identities=15% Similarity=0.167 Sum_probs=19.6
Q ss_pred ChHHHHHHHHHHHhccccCChhhHHHHHHHHHhcCChh
Q 044770 284 QVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFID 321 (464)
Q Consensus 284 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 321 (464)
..+.|.++++.+...|. ..|..++.++...|+..
T Consensus 52 ~~~~ar~Lld~L~~rG~----~Af~~F~~aL~et~~~~ 85 (97)
T 3ygs_P 52 RRDQARQLIIDLETRGS----QALPLFISCLEDTGQDM 85 (97)
T ss_dssp HHHHHHHHHHHHTTSCT----THHHHHHHHHHTTTCHH
T ss_pred hHHHHHHHHHHHHHcCh----HHHHHHHHHHHHcCcHH
Confidence 45666666666666442 25666666665555443
No 372
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=21.93 E-value=2.7e+02 Score=21.19 Aligned_cols=17 Identities=12% Similarity=-0.257 Sum_probs=7.1
Q ss_pred cHhHHHHHHHHHHhcCh
Q 044770 199 NEVSYCILATAHAVARL 215 (464)
Q Consensus 199 ~~~~~~~li~~~~~~~~ 215 (464)
+...-...+.++.+.++
T Consensus 89 ~~~vr~~a~~aL~~~~~ 105 (201)
T 3ltj_A 89 DGWVRQSAAVALGQIGD 105 (201)
T ss_dssp SHHHHHHHHHHHHHHCC
T ss_pred CHHHHHHHHHHHHHhCc
Confidence 43333444444444443
No 373
>3e3v_A Regulatory protein RECX; PSI-II, NYSGXRC, structural genomics, protein initiative; 2.04A {Lactobacillus salivarius}
Probab=21.68 E-value=2.1e+02 Score=21.81 Aligned_cols=55 Identities=4% Similarity=0.038 Sum_probs=0.0
Q ss_pred ChhhHHHHHHHHHHcCCCCcHHHHHHHHHHHHHcCCC-hhHHHHHHHhCCCCCCHH
Q 044770 396 DVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKIN-DPNLLRRMILGGARPDAE 450 (464)
Q Consensus 396 ~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~-a~~~~~~m~~~~~~p~~~ 450 (464)
..+....+++.+.+.|+--|...-..++....+.|.. ...+-.++.+.||.++.+
T Consensus 48 ~~~~ie~vl~~L~~~g~ldD~rfA~~~vr~~~~~~~~G~~~I~~eL~~KGI~~~~I 103 (177)
T 3e3v_A 48 HEDYISEIINKLIDLDLINDKNYAESYVRTMMNTSDKGPKVIKLNLSKKGIDDNIA 103 (177)
T ss_dssp CHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHCCCCHHHHHHHHHTTTCCHHHH
T ss_pred CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcccccHHHHHHHHHHcCCCHHHH
No 374
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=21.66 E-value=2.2e+02 Score=21.62 Aligned_cols=24 Identities=4% Similarity=-0.184 Sum_probs=11.0
Q ss_pred HhcCChhhHHHHHHHHHHcCCCCc
Q 044770 392 AEKGDVGNAENLFEELKKANYTKY 415 (464)
Q Consensus 392 ~~~g~~~~A~~~~~~m~~~~~~p~ 415 (464)
+..|+.+.-.++.+-+.+.|..++
T Consensus 46 ~~~~~~~~~~~iv~~Ll~~Gadvn 69 (186)
T 3t8k_A 46 LRNNNDEARYKISMFLINKGADIK 69 (186)
T ss_dssp TTCSCHHHHHHHHHHHHHTTCCSS
T ss_pred HHcCCcchHHHHHHHHHHCCCCCC
Confidence 334444443444444555554443
No 375
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=21.36 E-value=1.3e+02 Score=20.13 Aligned_cols=36 Identities=14% Similarity=0.095 Sum_probs=19.1
Q ss_pred ChHHHHHHhhhcCCCCCchhHHHHHHHHHHhhCcHHHH
Q 044770 77 GISQGEKLFCCIPKDYQNELLYNNLVIACLDKGVIKLS 114 (464)
Q Consensus 77 ~~~~a~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a 114 (464)
+.+.|.++++.++. ....+|..++.++...|+..-|
T Consensus 52 ~~~~ar~Lld~L~~--rG~~Af~~F~~aL~et~~~~La 87 (97)
T 3ygs_P 52 RRDQARQLIIDLET--RGSQALPLFISCLEDTGQDMLA 87 (97)
T ss_dssp HHHHHHHHHHHHTT--SCTTHHHHHHHHHHTTTCHHHH
T ss_pred hHHHHHHHHHHHHH--cChHHHHHHHHHHHHcCcHHHH
Confidence 45556666666655 2334555555555554544433
No 376
>3vu7_H DNA repair protein REV1; DNA replication, translesion DNA synthesis, damage tolerance, DNA repair, replication; HET: DNA; 2.80A {Homo sapiens} PDB: 2lsj_A*
Probab=21.29 E-value=1.4e+02 Score=21.17 Aligned_cols=42 Identities=10% Similarity=0.146 Sum_probs=17.4
Q ss_pred chhhHHHHhhcCccChhchHH---HHHHHHhhcchHHHHHHHHHH
Q 044770 11 GSAFQSWMREGFPVHRGEIFH---SINRLRKLQLNKRALEVMEWV 52 (464)
Q Consensus 11 ~~~l~~~~~~g~~~~~~~~~~---~l~~~~~~~~~~~A~~~~~~~ 52 (464)
..++..|....-.|.+..+.. .+..+...++++.+..+++++
T Consensus 42 K~lL~~Wv~s~~~P~~~DV~~l~~yL~~lVeek~Lek~~~vlk~l 86 (124)
T 3vu7_H 42 KTLLREWITTISDPMEEDILQVVKYCTDLIEEKDLEKLDLVIKYM 86 (124)
T ss_dssp HHHHHHHHHHHCSCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHHhhcccHHHHHHHHHHH
Confidence 344444544433333333222 233333444555555444444
No 377
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=21.00 E-value=4e+02 Score=22.88 Aligned_cols=62 Identities=5% Similarity=-0.015 Sum_probs=32.4
Q ss_pred HHHHHHHHhhcChHHHHHHhhhcCCC-CCchhHHHHHHHHHHhh-CcHHHHHHHHHHHHHcCCC
Q 044770 66 SYLLEFTIKNHGISQGEKLFCCIPKD-YQNELLYNNLVIACLDK-GVIKLSLEYMKKMRVLGHS 127 (464)
Q Consensus 66 ~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~li~~~~~~-~~~~~a~~~~~~m~~~~~~ 127 (464)
..++.-|...|+.++|...++++... .....+...+..++-+. ..-+.+..++..+.+.|+-
T Consensus 15 ~~ll~Ey~~~~d~~Ea~~ci~el~~p~~~~~~v~~~i~~~le~~~~~re~~~~Ll~~L~~~~~i 78 (339)
T 1ug3_A 15 KAIIEEYLHLNDMKEAVQCVQELASPSLLFIFVRHGVESTLERSAIAREHMGQLLHQLLCAGHL 78 (339)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHTTCCGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHTTSS
T ss_pred HHHHHHHHhCCCHHHHHHHHHHcCCcccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHCCCC
Confidence 45666677777777777777777652 11122233333333221 1234455566666655543
No 378
>2jul_A Calsenilin; EF-hand, calcium, LXXLL, DNA binding protein, dimer, alternative splicing, apoptosis, cytoplasm, endoplasmic reticulum, golgi apparatus; NMR {Mus musculus}
Probab=20.07 E-value=3.4e+02 Score=21.79 Aligned_cols=145 Identities=7% Similarity=-0.023 Sum_probs=69.8
Q ss_pred cchhhHHHHhh--cCccChhchHHHHHHHHhhcc-hHHHHHHHHHHHHcCCCCCCchhHHHHHHHHHhhcChHHHHHHhh
Q 044770 10 VGSAFQSWMRE--GFPVHRGEIFHSINRLRKLQL-NKRALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQGEKLFC 86 (464)
Q Consensus 10 ~~~~l~~~~~~--g~~~~~~~~~~~l~~~~~~~~-~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 86 (464)
+..+++.+... .-..+...+..++..+...+. ......+|+.+-....-..+..-+..++..+......++...+|+
T Consensus 93 i~~l~~~fd~~~~~G~I~~~ef~~~l~~~~~~~~~~~~~~~~f~~~D~d~dG~I~~~Ef~~~l~~~~~~~~~~~l~~~F~ 172 (256)
T 2jul_A 93 LQSLYRGFKNECPTGLVDEDTFKLIYSQFFPQGDATTYAHFLFNAFDADGNGAIHFEDFVVGLSILLRGTVHEKLKWAFN 172 (256)
T ss_dssp HHHHHHHHHHHCTTSSEEHHHHHHHHHHHCCSSCCHHHHHHHHHHSSCSCCSEECSHHHHHHHHHHHSCCHHHHHHHHHH
T ss_pred HHHHHHHHHhhCCCCcCCHHHHHHHHHHHcccCCcHHHHHHHHHHhccCCCCcCcHHHHHHHHHHHhccChHHHHHHHHH
Confidence 44555555443 223455566666655543222 234556666553321112233334444444333334556677777
Q ss_pred hcCCCCCchhHHHHHHHHHHhh----C-----------cHHHHHHHHHHHHHcCCCCchhhHHHHHHHhcCCCCcccHHH
Q 044770 87 CIPKDYQNELLYNNLVIACLDK----G-----------VIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPN 151 (464)
Q Consensus 87 ~~~~~~~~~~~~~~li~~~~~~----~-----------~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 151 (464)
.+-.......++.-+...+... | .-+.+..+|..+-..| -...++.-+...+.+...+-++..
T Consensus 173 ~~D~d~dG~I~~~Ef~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~f~~~D~d~--dG~Is~~Ef~~~~~~~~~l~~~l~ 250 (256)
T 2jul_A 173 LYDINKDGCITKEEMLAIMKSIYDMMGRHTYPILREDAPLEHVERFFQKMDRNQ--DGVVTIDEFLETCQKDENIMNSMQ 250 (256)
T ss_dssp HTCCSSSSCBCHHHHHHHHHHHHHHCCCCCSCCSCCCCHHHHHHHHHHHSCCST--TCSBCHHHHHHHHHHCSSHHHHHH
T ss_pred HhCCCCCCcCcHHHHHHHHHHHHHHhCCCCCcccchhhHHHHHHHHHHHHCCCC--CCcEeHHHHHHHHHhCHHHHHHHH
Confidence 7654422223333333333222 3 2345566666553322 123466667777666666666666
Q ss_pred HHHHH
Q 044770 152 ILRQM 156 (464)
Q Consensus 152 ~~~~~ 156 (464)
.|+.+
T Consensus 251 ~~d~~ 255 (256)
T 2jul_A 251 LFENV 255 (256)
T ss_dssp HHHHH
T ss_pred hhccc
Confidence 66554
Done!