BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 044772
(159 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2NTY|C Chain C, Rop4-Gdp-Prone8
pdb|2NTY|D Chain D, Rop4-Gdp-Prone8
Length = 180
Score = 248 bits (633), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 116/139 (83%), Positives = 128/139 (92%), Gaps = 1/139 (0%)
Query: 21 KFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQ 80
+FIKCVTV DGAVGKTC+LISYT NTFPTDYVPTVFDNFSANV+VDG TVNLGLWDTAGQ
Sbjct: 5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGNTVNLGLWDTAGQ 64
Query: 81 EDYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLR 140
EDYNRLRPLSYRGADVFILAFSLIS+ SYEN++ KKW+PELRHYAP VPI+LVGTKLDLR
Sbjct: 65 EDYNRLRPLSYRGADVFILAFSLISKASYENVA-KKWIPELRHYAPGVPIILVGTKLDLR 123
Query: 141 KDRQFHLDYPGAYTISTEQ 159
D+QF +D+PGA I+T Q
Sbjct: 124 DDKQFFIDHPGAVPITTNQ 142
>pdb|2WBL|C Chain C, Three-Dimensional Structure Of A Binary Rop-Prone Complex
pdb|2WBL|D Chain D, Three-Dimensional Structure Of A Binary Rop-Prone Complex
Length = 180
Score = 246 bits (628), Expect = 4e-66, Method: Compositional matrix adjust.
Identities = 116/139 (83%), Positives = 128/139 (92%), Gaps = 1/139 (0%)
Query: 21 KFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQ 80
+FIKCVTV DGAVGKTC+LISYTGNTFPTDYVPTVFDNFSANV+VDG TVNLGLWDTAGQ
Sbjct: 5 RFIKCVTVGDGAVGKTCMLISYTGNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQ 64
Query: 81 EDYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLR 140
EDYNRLRPLSYRGADVF+LAFSLIS+ SYENI KKW+PEL+HYAP +PIVLVGTKLDLR
Sbjct: 65 EDYNRLRPLSYRGADVFLLAFSLISKASYENI-HKKWLPELKHYAPGIPIVLVGTKLDLR 123
Query: 141 KDRQFHLDYPGAYTISTEQ 159
D+QF D+PGA +I+T Q
Sbjct: 124 DDKQFLKDHPGAASITTAQ 142
>pdb|3BWD|D Chain D, Crystal Structure Of The Plant Rho Protein Rop5
Length = 182
Score = 246 bits (628), Expect = 4e-66, Method: Compositional matrix adjust.
Identities = 117/139 (84%), Positives = 128/139 (92%), Gaps = 1/139 (0%)
Query: 21 KFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQ 80
+FIKCVTV DGAVGKTCLLISYT NTFPTDYVPTVFDNFSANV+V+G TVNLGLWDTAGQ
Sbjct: 7 RFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGATVNLGLWDTAGQ 66
Query: 81 EDYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLR 140
EDYNRLRPLSYRGADVFILAFSLIS+ SYEN+S KKW+PEL+HYAP VPIVLVGTKLDLR
Sbjct: 67 EDYNRLRPLSYRGADVFILAFSLISKASYENVS-KKWIPELKHYAPGVPIVLVGTKLDLR 125
Query: 141 KDRQFHLDYPGAYTISTEQ 159
D+QF +D+PGA I+T Q
Sbjct: 126 DDKQFFIDHPGAVPITTVQ 144
>pdb|2J0V|A Chain A, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
pdb|2J0V|B Chain B, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
pdb|2J0V|C Chain C, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
pdb|2J0V|D Chain D, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
Length = 212
Score = 217 bits (553), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 102/134 (76%), Positives = 116/134 (86%), Gaps = 1/134 (0%)
Query: 21 KFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQ 80
KFIKCVTV DGAVGKTC+LI YT N FPTDY+PTVFDNFSANV VDG+ VNLGLWDTAGQ
Sbjct: 8 KFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGQIVNLGLWDTAGQ 67
Query: 81 EDYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLR 140
EDY+RLRPLSYRGAD+F+LAFSLIS+ SYEN+ KKW+PELR +AP+VPIVLVGTKLDLR
Sbjct: 68 EDYSRLRPLSYRGADIFVLAFSLISKASYENV-LKKWMPELRRFAPNVPIVLVGTKLDLR 126
Query: 141 KDRQFHLDYPGAYT 154
D+ + D+ T
Sbjct: 127 DDKGYLADHTNVIT 140
>pdb|1DS6|A Chain A, Crystal Structure Of A Rac-Rhogdi Complex
Length = 192
Score = 191 bits (485), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 88/121 (72%), Positives = 102/121 (84%), Gaps = 1/121 (0%)
Query: 23 IKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQED 82
IKCV V DGAVGKTCLLISYT N FP +Y+PTVFDN+SANVMVD + VNLGLWDTAGQED
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDSKPVNLGLWDTAGQED 63
Query: 83 YNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKD 142
Y+RLRPLSY DVF++ FSL+S SYEN+ + KW PE+RH+ PS PI+LVGTKLDLR D
Sbjct: 64 YDRLRPLSYPQTDVFLICFSLVSPASYENV-RAKWFPEVRHHCPSTPIILVGTKLDLRDD 122
Query: 143 R 143
+
Sbjct: 123 K 123
>pdb|2YIN|C Chain C, Structure Of The Complex Between Dock2 And Rac1.
pdb|2YIN|D Chain D, Structure Of The Complex Between Dock2 And Rac1
Length = 196
Score = 190 bits (483), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 87/121 (71%), Positives = 103/121 (85%), Gaps = 1/121 (0%)
Query: 23 IKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQED 82
IKCV V DGAVGKTCLLISYT N FP +Y+PTVFDN+SANVMVDG+ VNLGLWDTAGQED
Sbjct: 23 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQED 82
Query: 83 YNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKD 142
Y+RLRPLSY DVF++ FSL+S S+EN+ + KW PE+RH+ P+ PI+LVGTKLDLR D
Sbjct: 83 YDRLRPLSYPQTDVFLICFSLVSPASFENV-RAKWYPEVRHHCPNTPIILVGTKLDLRDD 141
Query: 143 R 143
+
Sbjct: 142 K 142
>pdb|2FJU|A Chain A, Activated Rac1 Bound To Its Effector Phospholipase C Beta
2
Length = 178
Score = 189 bits (481), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 87/121 (71%), Positives = 103/121 (85%), Gaps = 1/121 (0%)
Query: 23 IKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQED 82
IKCV V DGAVGKTCLLISYT N FP +Y+PTVFDN+SANVMVDG+ VNLGLWDTAGQED
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQED 63
Query: 83 YNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKD 142
Y+RLRPLSY DVF++ FSL+S S+EN+ + KW PE+RH+ P+ PI+LVGTKLDLR D
Sbjct: 64 YDRLRPLSYPQTDVFLICFSLVSPASFENV-RAKWYPEVRHHCPNTPIILVGTKLDLRDD 122
Query: 143 R 143
+
Sbjct: 123 K 123
>pdb|1FOE|B Chain B, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|1FOE|D Chain D, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|1FOE|F Chain F, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|1FOE|H Chain H, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|2NZ8|A Chain A, N-Terminal Dhph Cassette Of Trio In Complex With
Nucleotide- Free Rac1
pdb|3BJI|C Chain C, Structural Basis Of Promiscuous Guanine Nucleotide
Exchange By The T-Cell Essential Vav1
pdb|3BJI|D Chain D, Structural Basis Of Promiscuous Guanine Nucleotide
Exchange By The T-Cell Essential Vav1
Length = 177
Score = 189 bits (481), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 87/121 (71%), Positives = 103/121 (85%), Gaps = 1/121 (0%)
Query: 23 IKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQED 82
IKCV V DGAVGKTCLLISYT N FP +Y+PTVFDN+SANVMVDG+ VNLGLWDTAGQED
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQED 63
Query: 83 YNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKD 142
Y+RLRPLSY DVF++ FSL+S S+EN+ + KW PE+RH+ P+ PI+LVGTKLDLR D
Sbjct: 64 YDRLRPLSYPQTDVFLICFSLVSPASFENV-RAKWYPEVRHHCPNTPIILVGTKLDLRDD 122
Query: 143 R 143
+
Sbjct: 123 K 123
>pdb|3SUA|A Chain A, Crystal Structure Of The Intracellular Domain Of Plexin-B1
In Complex With Rac1
pdb|3SUA|B Chain B, Crystal Structure Of The Intracellular Domain Of Plexin-B1
In Complex With Rac1
pdb|3SUA|C Chain C, Crystal Structure Of The Intracellular Domain Of Plexin-B1
In Complex With Rac1
pdb|3SU8|A Chain A, Crystal Structure Of A Truncated Intracellular Domain Of
Plexin-B1 In Complex With Rac1
Length = 184
Score = 189 bits (481), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 87/121 (71%), Positives = 103/121 (85%), Gaps = 1/121 (0%)
Query: 23 IKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQED 82
IKCV V DGAVGKTCLLISYT N FP +Y+PTVFDN+SANVMVDG+ VNLGLWDTAGQED
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQED 63
Query: 83 YNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKD 142
Y+RLRPLSY DVF++ FSL+S S+EN+ + KW PE+RH+ P+ PI+LVGTKLDLR D
Sbjct: 64 YDRLRPLSYPQTDVFLICFSLVSPASFENV-RAKWYPEVRHHCPNTPIILVGTKLDLRDD 122
Query: 143 R 143
+
Sbjct: 123 K 123
>pdb|2VRW|A Chain A, Critical Structural Role For The Ph And C1 Domains Of The
Vav1 Exchange Factor
Length = 184
Score = 189 bits (481), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 87/121 (71%), Positives = 103/121 (85%), Gaps = 1/121 (0%)
Query: 23 IKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQED 82
IKCV V DGAVGKTCLLISYT N FP +Y+PTVFDN+SANVMVDG+ VNLGLWDTAGQED
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQED 63
Query: 83 YNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKD 142
Y+RLRPLSY DVF++ FSL+S S+EN+ + KW PE+RH+ P+ PI+LVGTKLDLR D
Sbjct: 64 YDRLRPLSYPQTDVFLICFSLVSPASFENV-RAKWYPEVRHHCPNTPIILVGTKLDLRDD 122
Query: 143 R 143
+
Sbjct: 123 K 123
>pdb|1HE1|C Chain C, Crystal Structure Of The Complex Between The Gap Domain Of
The Pseudomonas Aeruginosa Exos Toxin And Human Rac
pdb|1HE1|D Chain D, Crystal Structure Of The Complex Between The Gap Domain Of
The Pseudomonas Aeruginosa Exos Toxin And Human Rac
Length = 176
Score = 189 bits (481), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 87/121 (71%), Positives = 103/121 (85%), Gaps = 1/121 (0%)
Query: 23 IKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQED 82
IKCV V DGAVGKTCLLISYT N FP +Y+PTVFDN+SANVMVDG+ VNLGLWDTAGQED
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQED 63
Query: 83 YNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKD 142
Y+RLRPLSY DVF++ FSL+S S+EN+ + KW PE+RH+ P+ PI+LVGTKLDLR D
Sbjct: 64 YDRLRPLSYPQTDVFLICFSLVSPASFENV-RAKWYPEVRHHCPNTPIILVGTKLDLRDD 122
Query: 143 R 143
+
Sbjct: 123 K 123
>pdb|3TH5|A Chain A, Crystal Structure Of Wild-Type Rac1
pdb|3TH5|B Chain B, Crystal Structure Of Wild-Type Rac1
Length = 204
Score = 189 bits (480), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 87/121 (71%), Positives = 103/121 (85%), Gaps = 1/121 (0%)
Query: 23 IKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQED 82
IKCV V DGAVGKTCLLISYT N FP +Y+PTVFDN+SANVMVDG+ VNLGLWDTAGQED
Sbjct: 31 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQED 90
Query: 83 YNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKD 142
Y+RLRPLSY DVF++ FSL+S S+EN+ + KW PE+RH+ P+ PI+LVGTKLDLR D
Sbjct: 91 YDRLRPLSYPQTDVFLICFSLVSPASFENV-RAKWYPEVRHHCPNTPIILVGTKLDLRDD 149
Query: 143 R 143
+
Sbjct: 150 K 150
>pdb|1I4D|D Chain D, Crystal Structure Analysis Of Rac1-Gdp Complexed With
Arfaptin (P21)
pdb|1I4L|D Chain D, Crystal Structure Analysis Of Rac1-Gdp In Complex With
Arfaptin (P41)
Length = 192
Score = 189 bits (480), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 87/121 (71%), Positives = 103/121 (85%), Gaps = 1/121 (0%)
Query: 23 IKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQED 82
IKCV V DGAVGKTCLLISYT N FP +Y+PTVFDN+SANVMVDG+ VNLGLWDTAGQED
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQED 63
Query: 83 YNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKD 142
Y+RLRPLSY DVF++ FSL+S S+EN+ + KW PE+RH+ P+ PI+LVGTKLDLR D
Sbjct: 64 YDRLRPLSYPQTDVFLICFSLVSPASFENV-RAKWYPEVRHHCPNTPIILVGTKLDLRDD 122
Query: 143 R 143
+
Sbjct: 123 K 123
>pdb|2C2H|A Chain A, Crystal Structure Of The Human Rac3 In Complex With Gdp
pdb|2C2H|B Chain B, Crystal Structure Of The Human Rac3 In Complex With Gdp
Length = 192
Score = 188 bits (477), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 87/121 (71%), Positives = 102/121 (84%), Gaps = 1/121 (0%)
Query: 23 IKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQED 82
IKCV V DGAVGKTCLLISYT N FP +Y+PTVFDN+SANVMVDG+ VNLGLWDTAGQED
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQED 63
Query: 83 YNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKD 142
Y+RLRPLSY DVF++ FSL+S S+EN+ + KW PE+RH+ P PI+LVGTKLDLR D
Sbjct: 64 YDRLRPLSYPQTDVFLICFSLVSPASFENV-RAKWYPEVRHHCPHTPILLVGTKLDLRDD 122
Query: 143 R 143
+
Sbjct: 123 K 123
>pdb|2G0N|A Chain A, The Crystal Structure Of The Human Rac3 In Complex With
Gdp And Chloride
pdb|2G0N|B Chain B, The Crystal Structure Of The Human Rac3 In Complex With
Gdp And Chloride
pdb|2OV2|A Chain A, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|F Chain F, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|B Chain B, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|C Chain C, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|G Chain G, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|D Chain D, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|E Chain E, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|H Chain H, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2QME|A Chain A, Crystal Structure Of Human Rac3 In Complex With Crib
Domain Of Human P21-Activated Kinase 1 (Pak1)
Length = 179
Score = 188 bits (477), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 87/121 (71%), Positives = 102/121 (84%), Gaps = 1/121 (0%)
Query: 23 IKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQED 82
IKCV V DGAVGKTCLLISYT N FP +Y+PTVFDN+SANVMVDG+ VNLGLWDTAGQED
Sbjct: 5 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQED 64
Query: 83 YNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKD 142
Y+RLRPLSY DVF++ FSL+S S+EN+ + KW PE+RH+ P PI+LVGTKLDLR D
Sbjct: 65 YDRLRPLSYPQTDVFLICFSLVSPASFENV-RAKWYPEVRHHCPHTPILLVGTKLDLRDD 123
Query: 143 R 143
+
Sbjct: 124 K 124
>pdb|3B13|B Chain B, Crystal Structure Of The Dhr-2 Domain Of Dock2 In Complex
With Rac1 (T17n Mutant)
pdb|3B13|D Chain D, Crystal Structure Of The Dhr-2 Domain Of Dock2 In Complex
With Rac1 (T17n Mutant)
Length = 184
Score = 187 bits (476), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 86/121 (71%), Positives = 102/121 (84%), Gaps = 1/121 (0%)
Query: 23 IKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQED 82
IKCV V DGAVGK CLLISYT N FP +Y+PTVFDN+SANVMVDG+ VNLGLWDTAGQED
Sbjct: 11 IKCVVVGDGAVGKNCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQED 70
Query: 83 YNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKD 142
Y+RLRPLSY DVF++ FSL+S S+EN+ + KW PE+RH+ P+ PI+LVGTKLDLR D
Sbjct: 71 YDRLRPLSYPQTDVFLICFSLVSPASFENV-RAKWYPEVRHHCPNTPIILVGTKLDLRDD 129
Query: 143 R 143
+
Sbjct: 130 K 130
>pdb|2IC5|A Chain A, Crystal Structure Of Human Rac3 Grown In The Presence Of
Gpp(Nh)p.
pdb|2IC5|B Chain B, Crystal Structure Of Human Rac3 Grown In The Presence Of
Gpp(Nh)p
Length = 180
Score = 187 bits (476), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 87/121 (71%), Positives = 102/121 (84%), Gaps = 1/121 (0%)
Query: 23 IKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQED 82
IKCV V DGAVGKTCLLISYT N FP +Y+PTVFDN+SANVMVDG+ VNLGLWDTAGQED
Sbjct: 5 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQED 64
Query: 83 YNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKD 142
Y+RLRPLSY DVF++ FSL+S S+EN+ + KW PE+RH+ P PI+LVGTKLDLR D
Sbjct: 65 YDRLRPLSYPQTDVFLICFSLVSPASFENV-RAKWYPEVRHHCPHTPILLVGTKLDLRDD 123
Query: 143 R 143
+
Sbjct: 124 K 124
>pdb|4GZM|A Chain A, Crystal Structure Of Rac1 F28l Mutant
pdb|4GZM|B Chain B, Crystal Structure Of Rac1 F28l Mutant
Length = 204
Score = 187 bits (475), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 86/121 (71%), Positives = 102/121 (84%), Gaps = 1/121 (0%)
Query: 23 IKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQED 82
IKCV V DGAVGKTCLLISYT N P +Y+PTVFDN+SANVMVDG+ VNLGLWDTAGQED
Sbjct: 31 IKCVVVGDGAVGKTCLLISYTTNALPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQED 90
Query: 83 YNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKD 142
Y+RLRPLSY DVF++ FSL+S S+EN+ + KW PE+RH+ P+ PI+LVGTKLDLR D
Sbjct: 91 YDRLRPLSYPQTDVFLICFSLVSPASFENV-RAKWYPEVRHHCPNTPIILVGTKLDLRDD 149
Query: 143 R 143
+
Sbjct: 150 K 150
>pdb|3SBD|A Chain A, Crystal Structure Of Rac1 P29s Mutant
pdb|3SBD|B Chain B, Crystal Structure Of Rac1 P29s Mutant
pdb|3SBE|A Chain A, Crystal Structure Of Rac1 P29s Mutant
Length = 187
Score = 187 bits (474), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 86/121 (71%), Positives = 102/121 (84%), Gaps = 1/121 (0%)
Query: 23 IKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQED 82
IKCV V DGAVGKTCLLISYT N F +Y+PTVFDN+SANVMVDG+ VNLGLWDTAGQED
Sbjct: 14 IKCVVVGDGAVGKTCLLISYTTNAFSGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQED 73
Query: 83 YNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKD 142
Y+RLRPLSY DVF++ FSL+S S+EN+ + KW PE+RH+ P+ PI+LVGTKLDLR D
Sbjct: 74 YDRLRPLSYPQTDVFLICFSLVSPASFENV-RAKWYPEVRHHCPNTPIILVGTKLDLRDD 132
Query: 143 R 143
+
Sbjct: 133 K 133
>pdb|2W2V|A Chain A, Rac2 (G12v) In Complex With Gtpgs
pdb|2W2V|B Chain B, Rac2 (G12v) In Complex With Gtpgs
pdb|2W2V|C Chain C, Rac2 (G12v) In Complex With Gtpgs
pdb|2W2V|D Chain D, Rac2 (G12v) In Complex With Gtpgs
Length = 184
Score = 186 bits (473), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 87/121 (71%), Positives = 101/121 (83%), Gaps = 1/121 (0%)
Query: 23 IKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQED 82
IKCV V D AVGKTCLLISYT N FP +Y+PTVFDN+SANVMVD + VNLGLWDTAGQED
Sbjct: 11 IKCVVVGDVAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDSKPVNLGLWDTAGQED 70
Query: 83 YNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKD 142
Y+RLRPLSY DVF++ FSL+S SYEN+ + KW PE+RH+ PS PI+LVGTKLDLR D
Sbjct: 71 YDRLRPLSYPQTDVFLICFSLVSPASYENV-RAKWFPEVRHHCPSTPIILVGTKLDLRDD 129
Query: 143 R 143
+
Sbjct: 130 K 130
>pdb|1G4U|R Chain R, Crystal Structure Of The Salmonella Tyrosine Phosphatase
And Gtpase Activating Protein Sptp Bound To Rac1
Length = 184
Score = 186 bits (473), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 86/121 (71%), Positives = 102/121 (84%), Gaps = 1/121 (0%)
Query: 23 IKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQED 82
IKCV V DGAVGKTCLLISYT N FP +Y+PTVFDN+SANVMVDG+ VNLGLWDTAGQED
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQED 63
Query: 83 YNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKD 142
Y+RLRPLSY DV ++ FSL+S S+EN+ + KW PE+RH+ P+ PI+LVGTKLDLR D
Sbjct: 64 YDRLRPLSYPQTDVSLICFSLVSPASFENV-RAKWYPEVRHHCPNTPIILVGTKLDLRDD 122
Query: 143 R 143
+
Sbjct: 123 K 123
>pdb|2W2T|A Chain A, Rac2 (G12v) In Complex With Gdp
pdb|2W2X|A Chain A, Complex Of Rac2 And Plcg2 Spph Domain
pdb|2W2X|B Chain B, Complex Of Rac2 And Plcg2 Spph Domain
Length = 185
Score = 186 bits (473), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 87/121 (71%), Positives = 101/121 (83%), Gaps = 1/121 (0%)
Query: 23 IKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQED 82
IKCV V D AVGKTCLLISYT N FP +Y+PTVFDN+SANVMVD + VNLGLWDTAGQED
Sbjct: 10 IKCVVVGDVAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDSKPVNLGLWDTAGQED 69
Query: 83 YNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKD 142
Y+RLRPLSY DVF++ FSL+S SYEN+ + KW PE+RH+ PS PI+LVGTKLDLR D
Sbjct: 70 YDRLRPLSYPQTDVFLICFSLVSPASYENV-RAKWFPEVRHHCPSTPIILVGTKLDLRDD 128
Query: 143 R 143
+
Sbjct: 129 K 129
>pdb|1MH1|A Chain A, Small G-Protein
Length = 186
Score = 186 bits (473), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 86/121 (71%), Positives = 102/121 (84%), Gaps = 1/121 (0%)
Query: 23 IKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQED 82
IKCV V DGAVGKTCLLISYT N FP +Y+PTVFDN+SANVMVDG+ VNLGLWDTAGQED
Sbjct: 6 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQED 65
Query: 83 YNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKD 142
Y+RLRPLSY DV ++ FSL+S S+EN+ + KW PE+RH+ P+ PI+LVGTKLDLR D
Sbjct: 66 YDRLRPLSYPQTDVSLICFSLVSPASFENV-RAKWYPEVRHHCPNTPIILVGTKLDLRDD 124
Query: 143 R 143
+
Sbjct: 125 K 125
>pdb|2H7V|A Chain A, Co-crystal Structure Of Ypka-rac1
pdb|2H7V|B Chain B, Co-crystal Structure Of Ypka-rac1
pdb|2P2L|A Chain A, Rac1-gdp-zinc Complex
pdb|2P2L|B Chain B, Rac1-gdp-zinc Complex
pdb|2P2L|C Chain C, Rac1-gdp-zinc Complex
Length = 188
Score = 186 bits (473), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 86/121 (71%), Positives = 102/121 (84%), Gaps = 1/121 (0%)
Query: 23 IKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQED 82
IKCV V DGAVGKTCLLISYT N FP +Y+PTVFDN+SANVMVDG+ VNLGLWDTAGQED
Sbjct: 8 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQED 67
Query: 83 YNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKD 142
Y+RLRPLSY DV ++ FSL+S S+EN+ + KW PE+RH+ P+ PI+LVGTKLDLR D
Sbjct: 68 YDRLRPLSYPQTDVSLICFSLVSPASFENV-RAKWYPEVRHHCPNTPIILVGTKLDLRDD 126
Query: 143 R 143
+
Sbjct: 127 K 127
>pdb|3RYT|C Chain C, The Plexin A1 Intracellular Region In Complex With Rac1
Length = 180
Score = 186 bits (473), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 86/121 (71%), Positives = 102/121 (84%), Gaps = 1/121 (0%)
Query: 23 IKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQED 82
IKCV V DGAVGKTCLLISYT N FP +Y+PTVFDN+SANVMVDG+ VNLGLWDTAG ED
Sbjct: 7 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLED 66
Query: 83 YNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKD 142
Y+RLRPLSY DVF++ FSL+S S+EN+ + KW PE+RH+ P+ PI+LVGTKLDLR D
Sbjct: 67 YDRLRPLSYPQTDVFLICFSLVSPASFENV-RAKWYPEVRHHCPNTPIILVGTKLDLRDD 125
Query: 143 R 143
+
Sbjct: 126 K 126
>pdb|1I4T|D Chain D, Crystal Structure Analysis Of Rac1-Gmppnp In Complex With
Arfaptin
pdb|2RMK|A Chain A, Rac1PRK1 COMPLEX
Length = 192
Score = 186 bits (472), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 86/121 (71%), Positives = 102/121 (84%), Gaps = 1/121 (0%)
Query: 23 IKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQED 82
IKCV V DGAVGKTCLLISYT N FP +Y+PTVFDN+SANVMVDG+ VNLGLWDTAG ED
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLED 63
Query: 83 YNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKD 142
Y+RLRPLSY DVF++ FSL+S S+EN+ + KW PE+RH+ P+ PI+LVGTKLDLR D
Sbjct: 64 YDRLRPLSYPQTDVFLICFSLVSPASFENV-RAKWYPEVRHHCPNTPIILVGTKLDLRDD 122
Query: 143 R 143
+
Sbjct: 123 K 123
>pdb|1HH4|A Chain A, Rac1-Rhogdi Complex Involved In Nadph Oxidase Activation
pdb|1HH4|B Chain B, Rac1-Rhogdi Complex Involved In Nadph Oxidase Activation
Length = 192
Score = 186 bits (472), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 86/121 (71%), Positives = 102/121 (84%), Gaps = 1/121 (0%)
Query: 23 IKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQED 82
IKCV V DGAVGKTCLLISYT N FP +Y+PTVFDN+SANVMVDG+ VNLGLWDTAGQED
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQED 63
Query: 83 YNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKD 142
Y+RLRPLSY DV ++ FSL+S S+EN+ + KW PE+RH+ P+ PI+LVGTKLDLR D
Sbjct: 64 YDRLRPLSYPQTDVSLICFSLVSPASFENV-RAKWYPEVRHHCPNTPIILVGTKLDLRDD 122
Query: 143 R 143
+
Sbjct: 123 K 123
>pdb|4GZL|A Chain A, Crystal Structure Of Rac1 Q61l Mutant
pdb|4GZL|B Chain B, Crystal Structure Of Rac1 Q61l Mutant
Length = 204
Score = 186 bits (472), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 86/121 (71%), Positives = 102/121 (84%), Gaps = 1/121 (0%)
Query: 23 IKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQED 82
IKCV V DGAVGKTCLLISYT N FP +Y+PTVFDN+SANVMVDG+ VNLGLWDTAG ED
Sbjct: 31 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLED 90
Query: 83 YNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKD 142
Y+RLRPLSY DVF++ FSL+S S+EN+ + KW PE+RH+ P+ PI+LVGTKLDLR D
Sbjct: 91 YDRLRPLSYPQTDVFLICFSLVSPASFENV-RAKWYPEVRHHCPNTPIILVGTKLDLRDD 149
Query: 143 R 143
+
Sbjct: 150 K 150
>pdb|1E96|A Chain A, Structure Of The RacP67PHOX COMPLEX
Length = 192
Score = 186 bits (471), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 86/121 (71%), Positives = 102/121 (84%), Gaps = 1/121 (0%)
Query: 23 IKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQED 82
IKCV V DGAVGKTCLLISYT N FP +Y+PTVFDN+SANVMVDG+ VNLGLWDTAG ED
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLED 63
Query: 83 YNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKD 142
Y+RLRPLSY DVF++ FSL+S S+EN+ + KW PE+RH+ P+ PI+LVGTKLDLR D
Sbjct: 64 YDRLRPLSYPQTDVFLICFSLVSPASFENV-RAKWYPEVRHHCPNTPIILVGTKLDLRDD 122
Query: 143 R 143
+
Sbjct: 123 K 123
>pdb|2WKR|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2
C450m Mutant
Length = 332
Score = 183 bits (465), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 84/123 (68%), Positives = 102/123 (82%), Gaps = 1/123 (0%)
Query: 21 KFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQ 80
+ IKCV V DGAVGKTCLLISYT N FP +Y+PTVFDN+SANVMVDG+ VNLGLWDTAG
Sbjct: 154 ELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGL 213
Query: 81 EDYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLR 140
EDY+RLRPLSY DVF++ FSL+S S+ ++ + KW PE+RH+ P+ PI+LVGTKLDLR
Sbjct: 214 EDYDRLRPLSYPQTDVFLICFSLVSPASFHHV-RAKWYPEVRHHCPNTPIILVGTKLDLR 272
Query: 141 KDR 143
D+
Sbjct: 273 DDK 275
>pdb|2WKQ|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2
C450a Mutant
Length = 332
Score = 183 bits (465), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 84/123 (68%), Positives = 102/123 (82%), Gaps = 1/123 (0%)
Query: 21 KFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQ 80
+ IKCV V DGAVGKTCLLISYT N FP +Y+PTVFDN+SANVMVDG+ VNLGLWDTAG
Sbjct: 154 ELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGL 213
Query: 81 EDYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLR 140
EDY+RLRPLSY DVF++ FSL+S S+ ++ + KW PE+RH+ P+ PI+LVGTKLDLR
Sbjct: 214 EDYDRLRPLSYPQTDVFLICFSLVSPASFHHV-RAKWYPEVRHHCPNTPIILVGTKLDLR 272
Query: 141 KDR 143
D+
Sbjct: 273 DDK 275
>pdb|2WKP|A Chain A, Structure Of A Photoactivatable Rac1 Containing Lov2
Wildtype
Length = 332
Score = 183 bits (465), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 84/123 (68%), Positives = 102/123 (82%), Gaps = 1/123 (0%)
Query: 21 KFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQ 80
+ IKCV V DGAVGKTCLLISYT N FP +Y+PTVFDN+SANVMVDG+ VNLGLWDTAG
Sbjct: 154 ELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGL 213
Query: 81 EDYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLR 140
EDY+RLRPLSY DVF++ FSL+S S+ ++ + KW PE+RH+ P+ PI+LVGTKLDLR
Sbjct: 214 EDYDRLRPLSYPQTDVFLICFSLVSPASFHHV-RAKWYPEVRHHCPNTPIILVGTKLDLR 272
Query: 141 KDR 143
D+
Sbjct: 273 DDK 275
>pdb|1RYF|A Chain A, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
pdb|1RYF|B Chain B, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
pdb|1RYH|A Chain A, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
pdb|1RYH|B Chain B, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
Length = 203
Score = 181 bits (459), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 90/140 (64%), Positives = 106/140 (75%), Gaps = 20/140 (14%)
Query: 23 IKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQED 82
IKCV V DGAVGKTCLLISYT N FP +Y+PTVFDN+SANVMVDG+ VNLGLWDTAGQED
Sbjct: 6 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQED 65
Query: 83 YNRLRPLSY--------------RG-----ADVFILAFSLISRPSYENISKKKWVPELRH 123
Y+RLRPLSY RG ADVF++ FSL+S S+EN+ + KW PE+RH
Sbjct: 66 YDRLRPLSYPQTVGETYGKDITSRGKDKPIADVFLICFSLVSPASFENV-RAKWYPEVRH 124
Query: 124 YAPSVPIVLVGTKLDLRKDR 143
+ P+ PI+LVGTKLDLR D+
Sbjct: 125 HCPNTPIILVGTKLDLRDDK 144
>pdb|4DID|A Chain A, Crystal Structure Of Salmonella Effector N-Terminal Domain
Sopb In Complex With Cdc42
Length = 193
Score = 169 bits (428), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 77/120 (64%), Positives = 96/120 (80%), Gaps = 1/120 (0%)
Query: 23 IKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQED 82
IKCV V DGAVGKTCLLISYT N FP++YVPTVFDN++ VM+ G LGL+DTAGQED
Sbjct: 14 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQED 73
Query: 83 YNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKD 142
Y+RLRPLSY DVF++ FS++S S+EN+ K+KWVPE+ H+ P P +LVGT++DLR D
Sbjct: 74 YDRLRPLSYPQTDVFLVCFSVVSPSSFENV-KEKWVPEITHHCPKTPFLLVGTQIDLRDD 132
>pdb|1GZS|A Chain A, Crystal Structure Of The Complex Between The Gef Domain Of
The Salmonella Typhimurium Sope Toxin And Human Cdc42
pdb|1GZS|C Chain C, Crystal Structure Of The Complex Between The Gef Domain Of
The Salmonella Typhimurium Sope Toxin And Human Cdc42
Length = 180
Score = 169 bits (428), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 77/120 (64%), Positives = 96/120 (80%), Gaps = 1/120 (0%)
Query: 23 IKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQED 82
IKCV V DGAVGKTCLLISYT N FP++YVPTVFDN++ VM+ G LGL+DTAGQED
Sbjct: 6 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQED 65
Query: 83 YNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKD 142
Y+RLRPLSY DVF++ FS++S S+EN+ K+KWVPE+ H+ P P +LVGT++DLR D
Sbjct: 66 YDRLRPLSYPQTDVFLVCFSVVSPSSFENV-KEKWVPEITHHCPKTPFLLVGTQIDLRDD 124
>pdb|1AJE|A Chain A, Cdc42 From Human, Nmr, 20 Structures
Length = 194
Score = 169 bits (428), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 77/120 (64%), Positives = 96/120 (80%), Gaps = 1/120 (0%)
Query: 23 IKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQED 82
IKCV V DGAVGKTCLLISYT N FP++YVPTVFDN++ VM+ G LGL+DTAGQED
Sbjct: 11 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQED 70
Query: 83 YNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKD 142
Y+RLRPLSY DVF++ FS++S S+EN+ K+KWVPE+ H+ P P +LVGT++DLR D
Sbjct: 71 YDRLRPLSYPQTDVFLVCFSVVSPSSFENV-KEKWVPEITHHCPKTPFLLVGTQIDLRDD 129
>pdb|1EES|A Chain A, Solution Structure Of Cdc42hs Complexed With A Peptide
Derived From P-21 Activated Kinase, Nmr, 20 Structures
Length = 178
Score = 169 bits (428), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 77/120 (64%), Positives = 96/120 (80%), Gaps = 1/120 (0%)
Query: 23 IKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQED 82
IKCV V DGAVGKTCLLISYT N FP++YVPTVFDN++ VM+ G LGL+DTAGQED
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQED 63
Query: 83 YNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKD 142
Y+RLRPLSY DVF++ FS++S S+EN+ K+KWVPE+ H+ P P +LVGT++DLR D
Sbjct: 64 YDRLRPLSYPQTDVFLVCFSVVSPSSFENV-KEKWVPEITHHCPKTPFLLVGTQIDLRDD 122
>pdb|2WM9|B Chain B, Structure Of The Complex Between Dock9 And Cdc42.
pdb|2WMN|B Chain B, Structure Of The Complex Between Dock9 And Cdc42-Gdp.
pdb|2WMO|B Chain B, Structure Of The Complex Between Dock9 And Cdc42
Length = 190
Score = 169 bits (428), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 77/120 (64%), Positives = 96/120 (80%), Gaps = 1/120 (0%)
Query: 23 IKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQED 82
IKCV V DGAVGKTCLLISYT N FP++YVPTVFDN++ VM+ G LGL+DTAGQED
Sbjct: 6 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQED 65
Query: 83 YNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKD 142
Y+RLRPLSY DVF++ FS++S S+EN+ K+KWVPE+ H+ P P +LVGT++DLR D
Sbjct: 66 YDRLRPLSYPQTDVFLVCFSVVSPSSFENV-KEKWVPEITHHCPKTPFLLVGTQIDLRDD 124
>pdb|1KZ7|B Chain B, Crystal Structure Of The DhPH FRAGMENT OF MURINE DBS IN
Complex With The Placental Isoform Of Human Cdc42
pdb|1KZ7|D Chain D, Crystal Structure Of The DhPH FRAGMENT OF MURINE DBS IN
Complex With The Placental Isoform Of Human Cdc42
pdb|1KZG|B Chain B, Dbscdc42(Y889f)
pdb|1KZG|D Chain D, Dbscdc42(Y889f)
pdb|1KI1|A Chain A, Guanine Nucleotide Exchange Region Of Intersectin In
Complex With Cdc42
pdb|1KI1|C Chain C, Guanine Nucleotide Exchange Region Of Intersectin In
Complex With Cdc42
Length = 188
Score = 169 bits (428), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 77/120 (64%), Positives = 96/120 (80%), Gaps = 1/120 (0%)
Query: 23 IKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQED 82
IKCV V DGAVGKTCLLISYT N FP++YVPTVFDN++ VM+ G LGL+DTAGQED
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQED 63
Query: 83 YNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKD 142
Y+RLRPLSY DVF++ FS++S S+EN+ K+KWVPE+ H+ P P +LVGT++DLR D
Sbjct: 64 YDRLRPLSYPQTDVFLVCFSVVSPSSFENV-KEKWVPEITHHCPKTPFLLVGTQIDLRDD 122
>pdb|2ODB|A Chain A, The Crystal Structure Of Human Cdc42 In Complex With The
Crib Domain Of Human P21-Activated Kinase 6 (Pak6)
Length = 192
Score = 169 bits (428), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 77/120 (64%), Positives = 96/120 (80%), Gaps = 1/120 (0%)
Query: 23 IKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQED 82
IKCV V DGAVGKTCLLISYT N FP++YVPTVFDN++ VM+ G LGL+DTAGQED
Sbjct: 5 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQED 64
Query: 83 YNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKD 142
Y+RLRPLSY DVF++ FS++S S+EN+ K+KWVPE+ H+ P P +LVGT++DLR D
Sbjct: 65 YDRLRPLSYPQTDVFLVCFSVVSPSSFENV-KEKWVPEITHHCPKTPFLLVGTQIDLRDD 123
>pdb|1CEE|A Chain A, Solution Structure Of Cdc42 In Complex With The Gtpase
Binding Domain Of Wasp
Length = 179
Score = 169 bits (428), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 77/120 (64%), Positives = 96/120 (80%), Gaps = 1/120 (0%)
Query: 23 IKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQED 82
IKCV V DGAVGKTCLLISYT N FP++YVPTVFDN++ VM+ G LGL+DTAGQED
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQED 63
Query: 83 YNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKD 142
Y+RLRPLSY DVF++ FS++S S+EN+ K+KWVPE+ H+ P P +LVGT++DLR D
Sbjct: 64 YDRLRPLSYPQTDVFLVCFSVVSPSSFENV-KEKWVPEITHHCPKTPFLLVGTQIDLRDD 122
>pdb|3GCG|A Chain A, Crystal Structure Of Map And Cdc42 Complex
Length = 182
Score = 169 bits (428), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 77/120 (64%), Positives = 96/120 (80%), Gaps = 1/120 (0%)
Query: 23 IKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQED 82
IKCV V DGAVGKTCLLISYT N FP++YVPTVFDN++ VM+ G LGL+DTAGQED
Sbjct: 8 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQED 67
Query: 83 YNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKD 142
Y+RLRPLSY DVF++ FS++S S+EN+ K+KWVPE+ H+ P P +LVGT++DLR D
Sbjct: 68 YDRLRPLSYPQTDVFLVCFSVVSPSSFENV-KEKWVPEITHHCPKTPFLLVGTQIDLRDD 126
>pdb|3EG5|A Chain A, Crystal Structure Of Mdia1-Tsh Gbd-Fh3 In Complex With
Cdc42-Gmppnp
pdb|3EG5|C Chain C, Crystal Structure Of Mdia1-Tsh Gbd-Fh3 In Complex With
Cdc42-Gmppnp
Length = 178
Score = 169 bits (428), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 77/120 (64%), Positives = 96/120 (80%), Gaps = 1/120 (0%)
Query: 23 IKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQED 82
IKCV V DGAVGKTCLLISYT N FP++YVPTVFDN++ VM+ G LGL+DTAGQED
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQED 63
Query: 83 YNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKD 142
Y+RLRPLSY DVF++ FS++S S+EN+ K+KWVPE+ H+ P P +LVGT++DLR D
Sbjct: 64 YDRLRPLSYPQTDVFLVCFSVVSPSSFENV-KEKWVPEITHHCPKTPFLLVGTQIDLRDD 122
>pdb|2QRZ|A Chain A, Cdc42 Bound To Gmp-Pcp: Induced Fit By Effector Is
Required
pdb|2QRZ|B Chain B, Cdc42 Bound To Gmp-Pcp: Induced Fit By Effector Is
Required
Length = 189
Score = 169 bits (428), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 77/120 (64%), Positives = 96/120 (80%), Gaps = 1/120 (0%)
Query: 23 IKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQED 82
IKCV V DGAVGKTCLLISYT N FP++YVPTVFDN++ VM+ G LGL+DTAGQED
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQED 63
Query: 83 YNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKD 142
Y+RLRPLSY DVF++ FS++S S+EN+ K+KWVPE+ H+ P P +LVGT++DLR D
Sbjct: 64 YDRLRPLSYPQTDVFLVCFSVVSPSSFENV-KEKWVPEITHHCPKTPFLLVGTQIDLRDD 122
>pdb|1DOA|A Chain A, Structure Of The Rho Family Gtp-Binding Protein Cdc42 In
Complex With The Multifunctional Regulator Rhogdi
Length = 191
Score = 169 bits (427), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 77/120 (64%), Positives = 96/120 (80%), Gaps = 1/120 (0%)
Query: 23 IKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQED 82
IKCV V DGAVGKTCLLISYT N FP++YVPTVFDN++ VM+ G LGL+DTAGQED
Sbjct: 7 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQED 66
Query: 83 YNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKD 142
Y+RLRPLSY DVF++ FS++S S+EN+ K+KWVPE+ H+ P P +LVGT++DLR D
Sbjct: 67 YDRLRPLSYPQTDVFLVCFSVVSPSSFENV-KEKWVPEITHHCPKTPFLLVGTQIDLRDD 125
>pdb|1GRN|A Chain A, Crystal Structure Of The Cdc42CDC42GAPALF3 COMPLEX.
pdb|2NGR|A Chain A, Transition State Complex For Gtp Hydrolysis By Cdc42:
Comparisons Of The High Resolution Structures For Cdc42
Bound To The Active And Catalytically Compromised Forms
Of The Cdc42-gap.
pdb|4ITR|C Chain C, Crystal Structure Of Ibpafic2-h3717a In Complex With
Adenylylated Cdc42
pdb|4ITR|D Chain D, Crystal Structure Of Ibpafic2-h3717a In Complex With
Adenylylated Cdc42
Length = 191
Score = 169 bits (427), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 77/120 (64%), Positives = 96/120 (80%), Gaps = 1/120 (0%)
Query: 23 IKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQED 82
IKCV V DGAVGKTCLLISYT N FP++YVPTVFDN++ VM+ G LGL+DTAGQED
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQED 63
Query: 83 YNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKD 142
Y+RLRPLSY DVF++ FS++S S+EN+ K+KWVPE+ H+ P P +LVGT++DLR D
Sbjct: 64 YDRLRPLSYPQTDVFLVCFSVVSPSSFENV-KEKWVPEITHHCPKTPFLLVGTQIDLRDD 122
>pdb|1AM4|D Chain D, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. Sapiens)
pdb|1AM4|E Chain E, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. Sapiens)
pdb|1AM4|F Chain F, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. Sapiens)
Length = 177
Score = 169 bits (427), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 77/120 (64%), Positives = 96/120 (80%), Gaps = 1/120 (0%)
Query: 23 IKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQED 82
IKCV V DGAVGKTCLLISYT N FP++YVPTVFDN++ VM+ G LGL+DTAGQED
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQED 63
Query: 83 YNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKD 142
Y+RLRPLSY DVF++ FS++S S+EN+ K+KWVPE+ H+ P P +LVGT++DLR D
Sbjct: 64 YDRLRPLSYPQTDVFLVCFSVVSPSSFENV-KEKWVPEITHHCPKTPFLLVGTQIDLRDD 122
>pdb|2DFK|B Chain B, Crystal Structure Of The Cdc42-Collybistin Ii Complex
pdb|2DFK|D Chain D, Crystal Structure Of The Cdc42-Collybistin Ii Complex
Length = 194
Score = 169 bits (427), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 77/120 (64%), Positives = 96/120 (80%), Gaps = 1/120 (0%)
Query: 23 IKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQED 82
IKCV V DGAVGKTCLLISYT N FP++YVPTVFDN++ VM+ G LGL+DTAGQED
Sbjct: 7 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQED 66
Query: 83 YNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKD 142
Y+RLRPLSY DVF++ FS++S S+EN+ K+KWVPE+ H+ P P +LVGT++DLR D
Sbjct: 67 YDRLRPLSYPQTDVFLVCFSVVSPSSFENV-KEKWVPEITHHCPKTPFLLVGTQIDLRDD 125
>pdb|3QBV|A Chain A, Structure Of Designed Orthogonal Interaction Between Cdc42
And Nucleotide Exchange Domains Of Intersectin
pdb|3QBV|C Chain C, Structure Of Designed Orthogonal Interaction Between Cdc42
And Nucleotide Exchange Domains Of Intersectin
Length = 178
Score = 167 bits (424), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 77/120 (64%), Positives = 95/120 (79%), Gaps = 1/120 (0%)
Query: 23 IKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQED 82
IKCV V DGAVGKTCLLISYT N FP++YVPTVFDN++ VM+ G LGL DTAGQED
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLRDTAGQED 63
Query: 83 YNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKD 142
Y+RLRPLSY DVF++ FS++S S+EN+ K+KWVPE+ H+ P P +LVGT++DLR D
Sbjct: 64 YDRLRPLSYPQTDVFLVCFSVVSPSSFENV-KEKWVPEITHHCPKTPFLLVGTQIDLRDD 122
>pdb|2KB0|A Chain A, Cdc42(T35a)
Length = 178
Score = 167 bits (424), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 76/120 (63%), Positives = 95/120 (79%), Gaps = 1/120 (0%)
Query: 23 IKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQED 82
IKCV V DGAVGKTCLLISYT N FP++YVP VFDN++ VM+ G LGL+DTAGQED
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPAVFDNYAVTVMIGGEPYTLGLFDTAGQED 63
Query: 83 YNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKD 142
Y+RLRPLSY DVF++ FS++S S+EN+ K+KWVPE+ H+ P P +LVGT++DLR D
Sbjct: 64 YDRLRPLSYPQTDVFLVCFSVVSPSSFENV-KEKWVPEITHHCPKTPFLLVGTQIDLRDD 122
>pdb|3VHL|B Chain B, Crystal Structure Of The Dhr-2 Domain Of Dock8 In Complex
With Cdc42 (T17n Mutant)
Length = 195
Score = 167 bits (423), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 76/120 (63%), Positives = 95/120 (79%), Gaps = 1/120 (0%)
Query: 23 IKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQED 82
IKCV V DGAVGK CLLISYT N FP++YVPTVFDN++ VM+ G LGL+DTAGQED
Sbjct: 11 IKCVVVGDGAVGKNCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQED 70
Query: 83 YNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKD 142
Y+RLRPLSY DVF++ FS++S S+EN+ K+KWVPE+ H+ P P +LVGT++DLR D
Sbjct: 71 YDRLRPLSYPQTDVFLVCFSVVSPSSFENV-KEKWVPEITHHCPKTPFLLVGTQIDLRDD 129
>pdb|2ASE|A Chain A, Nmr Structure Of The F28l Mutant Of Cdc42hs
Length = 178
Score = 167 bits (423), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 76/120 (63%), Positives = 95/120 (79%), Gaps = 1/120 (0%)
Query: 23 IKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQED 82
IKCV V DGAVGKTCLLISYT N P++YVPTVFDN++ VM+ G LGL+DTAGQED
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNKLPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQED 63
Query: 83 YNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKD 142
Y+RLRPLSY DVF++ FS++S S+EN+ K+KWVPE+ H+ P P +LVGT++DLR D
Sbjct: 64 YDRLRPLSYPQTDVFLVCFSVVSPSSFENV-KEKWVPEITHHCPKTPFLLVGTQIDLRDD 122
>pdb|1AN0|A Chain A, Cdc42hs-Gdp Complex
pdb|1AN0|B Chain B, Cdc42hs-Gdp Complex
Length = 190
Score = 166 bits (420), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 76/120 (63%), Positives = 95/120 (79%), Gaps = 1/120 (0%)
Query: 23 IKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQED 82
IKCV V DGAVGKTCLLISYT N FP++YVPTVFDN++ V + G LGL+DTAGQED
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVXIGGEPYTLGLFDTAGQED 63
Query: 83 YNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKD 142
Y+RLRPLSY DVF++ FS++S S+EN+ K+KWVPE+ H+ P P +LVGT++DLR D
Sbjct: 64 YDRLRPLSYPQTDVFLVCFSVVSPSSFENV-KEKWVPEITHHCPKTPFLLVGTQIDLRDD 122
>pdb|1CF4|A Chain A, Cdc42ACK GTPASE-Binding Domain Complex
pdb|1E0A|A Chain A, Cdc42 Complexed With The Gtpase Binding Domain Of P21
Activated Kinase
Length = 184
Score = 166 bits (420), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 76/120 (63%), Positives = 95/120 (79%), Gaps = 1/120 (0%)
Query: 23 IKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQED 82
IKCV V DGAVGKTCLLISYT N FP++YVPTVFDN++ VM+ G LGL+DTAG ED
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGLED 63
Query: 83 YNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKD 142
Y+RLRPLSY DVF++ FS++S S+EN+ K+KWVPE+ H+ P P +LVGT++DLR D
Sbjct: 64 YDRLRPLSYPQTDVFLVCFSVVSPSSFENV-KEKWVPEITHHCPKTPFLLVGTQIDLRDD 122
>pdb|1NF3|A Chain A, Structure Of Cdc42 In A Complex With The Gtpase-Binding
Domain Of The Cell Polarity Protein, Par6
pdb|1NF3|B Chain B, Structure Of Cdc42 In A Complex With The Gtpase-Binding
Domain Of The Cell Polarity Protein, Par6
Length = 195
Score = 166 bits (419), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 76/120 (63%), Positives = 95/120 (79%), Gaps = 1/120 (0%)
Query: 23 IKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQED 82
IKCV V DGAVGKTCLLISYT N FP++YVPTVFDN++ VM+ G LGL+DTAG ED
Sbjct: 8 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGLED 67
Query: 83 YNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKD 142
Y+RLRPLSY DVF++ FS++S S+EN+ K+KWVPE+ H+ P P +LVGT++DLR D
Sbjct: 68 YDRLRPLSYPQTDVFLVCFSVVSPSSFENV-KEKWVPEITHHCPKTPFLLVGTQIDLRDD 126
>pdb|1A4R|B Chain B, G12v Mutant Of Human Placental Cdc42 Gtpase In The Gdp
Form
pdb|1A4R|A Chain A, G12v Mutant Of Human Placental Cdc42 Gtpase In The Gdp
Form
Length = 191
Score = 166 bits (419), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 76/120 (63%), Positives = 95/120 (79%), Gaps = 1/120 (0%)
Query: 23 IKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQED 82
IKCV V D AVGKTCLLISYT N FP++YVPTVFDN++ VM+ G LGL+DTAGQED
Sbjct: 4 IKCVVVGDVAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQED 63
Query: 83 YNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKD 142
Y+RLRPLSY DVF++ FS++S S+EN+ K+KWVPE+ H+ P P +LVGT++DLR D
Sbjct: 64 YDRLRPLSYPQTDVFLVCFSVVSPSSFENV-KEKWVPEITHHCPKTPFLLVGTQIDLRDD 122
>pdb|2ATX|A Chain A, Crystal Structure Of The Tc10 Gppnhp Complex
pdb|2ATX|B Chain B, Crystal Structure Of The Tc10 Gppnhp Complex
Length = 194
Score = 160 bits (404), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 71/121 (58%), Positives = 98/121 (80%), Gaps = 1/121 (0%)
Query: 22 FIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQE 81
+KCV V DGAVGKTCLL+SY + FP +YVPTVFD+++ +V V G+ LGL+DTAGQE
Sbjct: 18 MLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQE 77
Query: 82 DYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRK 141
DY+RLRPLSY DVF++ FS+++ S++N+ K++WVPEL+ YAP+VP +L+GT++DLR
Sbjct: 78 DYDRLRPLSYPMTDVFLICFSVVNPASFQNV-KEEWVPELKEYAPNVPFLLIGTQIDLRD 136
Query: 142 D 142
D
Sbjct: 137 D 137
>pdb|2Q3H|A Chain A, The Crystal Structure Of Rhoua In The Gdp-bound State
Length = 201
Score = 157 bits (398), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 71/126 (56%), Positives = 98/126 (77%), Gaps = 1/126 (0%)
Query: 23 IKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQED 82
+KCV V DGAVGKT L++SYT N +PT+Y+PT FDNFSA V VDGR V L L DTAGQ++
Sbjct: 21 VKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNFSAVVSVDGRPVRLQLCDTAGQDE 80
Query: 83 YNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKD 142
+++LRPL Y D+F+L FS++S S++N+S +KWVPE+R + P PI+LVGT+ DLR+D
Sbjct: 81 FDKLRPLCYTNTDIFLLCFSVVSPSSFQNVS-EKWVPEIRCHCPKAPIILVGTQSDLRED 139
Query: 143 RQFHLD 148
+ ++
Sbjct: 140 VKVLIE 145
>pdb|2GCN|A Chain A, Crystal Structure Of The Human Rhoc-Gdp Complex
pdb|2GCO|B Chain B, Crystal Structure Of The Human Rhoc-gppnhp Complex
pdb|2GCP|A Chain A, Crystal Structure Of The Human Rhoc-Gsp Complex
Length = 201
Score = 152 bits (383), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 71/121 (58%), Positives = 90/121 (74%), Gaps = 1/121 (0%)
Query: 24 KCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDY 83
K V V DGA GKTCLLI ++ + FP YVPTVF+N+ A++ VDG+ V L LWDTAGQEDY
Sbjct: 27 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIADIEVDGKQVELALWDTAGQEDY 86
Query: 84 NRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKDR 143
+RLRPLSY DV ++ FS+ S S ENI +KW PE++H+ P+VPI+LVG K DLR+D
Sbjct: 87 DRLRPLSYPDTDVILMCFSIDSPDSLENIP-EKWTPEVKHFCPNVPIILVGNKKDLRQDE 145
Query: 144 Q 144
Sbjct: 146 H 146
>pdb|2GCO|A Chain A, Crystal Structure Of The Human Rhoc-gppnhp Complex
Length = 201
Score = 152 bits (383), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 71/121 (58%), Positives = 90/121 (74%), Gaps = 1/121 (0%)
Query: 24 KCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDY 83
K V V DGA GKTCLLI ++ + FP YVPTVF+N+ A++ VDG+ V L LWDTAGQEDY
Sbjct: 27 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIADIEVDGKQVELALWDTAGQEDY 86
Query: 84 NRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKDR 143
+RLRPLSY DV ++ FS+ S S ENI +KW PE++H+ P+VPI+LVG K DLR+D
Sbjct: 87 DRLRPLSYPDTDVILMCFSIDSPDSLENIP-EKWTPEVKHFXPNVPIILVGNKKDLRQDE 145
Query: 144 Q 144
Sbjct: 146 H 146
>pdb|1S1C|A Chain A, Crystal Structure Of The Complex Between The Human Rhoa
And Rho-Binding Domain Of Human Rocki
pdb|1S1C|B Chain B, Crystal Structure Of The Complex Between The Human Rhoa
And Rho-Binding Domain Of Human Rocki
Length = 183
Score = 152 bits (383), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 71/121 (58%), Positives = 89/121 (73%), Gaps = 1/121 (0%)
Query: 24 KCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDY 83
K V V DGA GKTCLLI ++ + FP YVPTVF+N+ A++ VDG+ V L LWDTAGQEDY
Sbjct: 9 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDY 68
Query: 84 NRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKDR 143
+RLRPLSY DV ++ FS+ S S ENI +KW PE++H+ P+VPI+LVG K DLR D
Sbjct: 69 DRLRPLSYPDTDVILMCFSIDSPDSLENIP-EKWTPEVKHFCPNVPIILVGNKKDLRNDE 127
Query: 144 Q 144
Sbjct: 128 H 128
>pdb|3TVD|A Chain A, Crystal Structure Of Mouse Rhoa-Gtp Complex
pdb|3TVD|B Chain B, Crystal Structure Of Mouse Rhoa-Gtp Complex
Length = 193
Score = 152 bits (383), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 71/121 (58%), Positives = 89/121 (73%), Gaps = 1/121 (0%)
Query: 24 KCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDY 83
K V V DGA GKTCLLI ++ + FP YVPTVF+N+ A++ VDG+ V L LWDTAGQEDY
Sbjct: 7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDY 66
Query: 84 NRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKDR 143
+RLRPLSY DV ++ FS+ S S ENI +KW PE++H+ P+VPI+LVG K DLR D
Sbjct: 67 DRLRPLSYPDTDVILMCFSIDSPDSLENIP-EKWTPEVKHFCPNVPIILVGNKKDLRNDE 125
Query: 144 Q 144
Sbjct: 126 H 126
>pdb|3KZ1|E Chain E, Crystal Structure Of The Complex Of Pdz-Rhogef DhPH
DOMAINS WITH GTP- Gamma-S Activated Rhoa
pdb|3KZ1|F Chain F, Crystal Structure Of The Complex Of Pdz-Rhogef DhPH
DOMAINS WITH GTP- Gamma-S Activated Rhoa
Length = 182
Score = 151 bits (382), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 71/121 (58%), Positives = 89/121 (73%), Gaps = 1/121 (0%)
Query: 24 KCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDY 83
K V V DGA GKTCLLI ++ + FP YVPTVF+N+ A++ VDG+ V L LWDTAGQEDY
Sbjct: 8 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDY 67
Query: 84 NRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKDR 143
+RLRPLSY DV ++ FS+ S S ENI +KW PE++H+ P+VPI+LVG K DLR D
Sbjct: 68 DRLRPLSYPDTDVILMCFSIDSPDSLENIP-EKWTPEVKHFCPNVPIILVGNKKDLRNDE 126
Query: 144 Q 144
Sbjct: 127 H 127
>pdb|4F38|A Chain A, Crystal Structure Of Geranylgeranylated Rhoa In Complex
With Rhogdi In Its Active Gppnhp-Bound Form
Length = 195
Score = 151 bits (382), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 71/121 (58%), Positives = 89/121 (73%), Gaps = 1/121 (0%)
Query: 24 KCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDY 83
K V V DGA GKTCLLI ++ + FP YVPTVF+N+ A++ VDG+ V L LWDTAGQEDY
Sbjct: 9 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDY 68
Query: 84 NRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKDR 143
+RLRPLSY DV ++ FS+ S S ENI +KW PE++H+ P+VPI+LVG K DLR D
Sbjct: 69 DRLRPLSYPDTDVILMCFSIDSPDSLENIP-EKWTPEVKHFCPNVPIILVGNKKDLRNDE 127
Query: 144 Q 144
Sbjct: 128 H 128
>pdb|1X86|B Chain B, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|1X86|D Chain D, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|1X86|F Chain F, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|1X86|H Chain H, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|2RGN|C Chain C, Crystal Structure Of P63rhogef Complex With Galpha-Q And
Rhoa
pdb|2RGN|F Chain F, Crystal Structure Of P63rhogef Complex With Galpha-Q And
Rhoa
Length = 196
Score = 151 bits (382), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 71/121 (58%), Positives = 89/121 (73%), Gaps = 1/121 (0%)
Query: 24 KCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDY 83
K V V DGA GKTCLLI ++ + FP YVPTVF+N+ A++ VDG+ V L LWDTAGQEDY
Sbjct: 10 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDY 69
Query: 84 NRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKDR 143
+RLRPLSY DV ++ FS+ S S ENI +KW PE++H+ P+VPI+LVG K DLR D
Sbjct: 70 DRLRPLSYPDTDVILMCFSIDSPDSLENIP-EKWTPEVKHFCPNVPIILVGNKKDLRNDE 128
Query: 144 Q 144
Sbjct: 129 H 129
>pdb|1LB1|B Chain B, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
pdb|1LB1|D Chain D, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
pdb|1LB1|F Chain F, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
pdb|1LB1|H Chain H, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
Length = 192
Score = 151 bits (382), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 71/121 (58%), Positives = 89/121 (73%), Gaps = 1/121 (0%)
Query: 24 KCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDY 83
K V V DGA GKTCLLI ++ + FP YVPTVF+N+ A++ VDG+ V L LWDTAGQEDY
Sbjct: 9 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDY 68
Query: 84 NRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKDR 143
+RLRPLSY DV ++ FS+ S S ENI +KW PE++H+ P+VPI+LVG K DLR D
Sbjct: 69 DRLRPLSYPDTDVILMCFSIDSPDSLENIP-EKWTPEVKHFCPNVPIILVGNKKDLRNDE 127
Query: 144 Q 144
Sbjct: 128 H 128
>pdb|3LW8|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LW8|B Chain B, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LW8|C Chain C, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LW8|D Chain D, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LWN|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex B)
pdb|3LWN|B Chain B, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex B)
pdb|3LXR|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa And Gdp (Complex
C)
Length = 185
Score = 151 bits (382), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 71/121 (58%), Positives = 89/121 (73%), Gaps = 1/121 (0%)
Query: 24 KCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDY 83
K V V DGA GKTCLLI ++ + FP YVPTVF+N+ A++ VDG+ V L LWDTAGQEDY
Sbjct: 11 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDY 70
Query: 84 NRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKDR 143
+RLRPLSY DV ++ FS+ S S ENI +KW PE++H+ P+VPI+LVG K DLR D
Sbjct: 71 DRLRPLSYPDTDVILMCFSIDSPDSLENIP-EKWTPEVKHFCPNVPIILVGNKKDLRNDE 129
Query: 144 Q 144
Sbjct: 130 H 130
>pdb|2FV8|A Chain A, The Crystal Structure Of Rhob In The Gdp-Bound State
Length = 207
Score = 151 bits (381), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 71/125 (56%), Positives = 90/125 (72%), Gaps = 1/125 (0%)
Query: 24 KCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDY 83
K V V DGA GKTCLLI ++ + FP YVPTVF+N+ A++ VDG+ V L LWDTAGQEDY
Sbjct: 27 KLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDY 86
Query: 84 NRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKDR 143
+RLRPLSY DV ++ FS+ S S ENI +KWVPE++H+ P+VPI+LV K DLR D
Sbjct: 87 DRLRPLSYPDTDVILMCFSVDSPDSLENIP-EKWVPEVKHFCPNVPIILVANKKDLRSDE 145
Query: 144 QFHLD 148
+
Sbjct: 146 HVRTE 150
>pdb|1Z2C|A Chain A, Crystal Structure Of Mdia1 Gbd-Fh3 In Complex With Rhoc-
Gmppnp
pdb|1Z2C|C Chain C, Crystal Structure Of Mdia1 Gbd-Fh3 In Complex With Rhoc-
Gmppnp
Length = 193
Score = 150 bits (379), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 71/121 (58%), Positives = 89/121 (73%), Gaps = 1/121 (0%)
Query: 24 KCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDY 83
K V V DGA GKTCLLI + + FP YVPTVF+N+ A++ VDG+ V L LWDTAGQEDY
Sbjct: 7 KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYIADIEVDGKQVELALWDTAGQEDY 66
Query: 84 NRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKDR 143
+RLRPLSY DV ++ FS+ S S ENI +KW PE++H+ P+VPI+LVG K DLR+D
Sbjct: 67 DRLRPLSYPDTDVILMCFSIDSPDSLENIP-EKWTPEVKHFCPNVPIILVGNKKDLRQDE 125
Query: 144 Q 144
Sbjct: 126 H 126
>pdb|3MSX|A Chain A, Crystal Structure Of Rhoa.Gdp.Mgf3 In Complex With Gap
Domain Of Arhgap20
Length = 180
Score = 150 bits (378), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 71/121 (58%), Positives = 88/121 (72%), Gaps = 1/121 (0%)
Query: 24 KCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDY 83
K V V DGA GKTCLLI + + FP YVPTVF+N+ A++ VDG+ V L LWDTAGQEDY
Sbjct: 7 KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDY 66
Query: 84 NRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKDR 143
+RLRPLSY DV ++ FS+ S S ENI +KW PE++H+ P+VPI+LVG K DLR D
Sbjct: 67 DRLRPLSYPDTDVILMCFSIDSPDSLENIP-EKWTPEVKHFCPNVPIILVGNKKDLRNDE 125
Query: 144 Q 144
Sbjct: 126 H 126
>pdb|1XCG|B Chain B, Crystal Structure Of Human Rhoa In Complex With DhPH
Fragment Of Pdzrhogef
pdb|1XCG|F Chain F, Crystal Structure Of Human Rhoa In Complex With DhPH
Fragment Of Pdzrhogef
pdb|3T06|B Chain B, Crystal Structure Of The DhPH FRAGMENT OF PDZRHOGEF WITH
N-Terminal Regulatory Elements In Complex With Human
Rhoa
pdb|3T06|F Chain F, Crystal Structure Of The DhPH FRAGMENT OF PDZRHOGEF WITH
N-Terminal Regulatory Elements In Complex With Human
Rhoa
Length = 178
Score = 150 bits (378), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 71/121 (58%), Positives = 88/121 (72%), Gaps = 1/121 (0%)
Query: 24 KCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDY 83
K V V DGA GKTCLLI + + FP YVPTVF+N+ A++ VDG+ V L LWDTAGQEDY
Sbjct: 5 KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDY 64
Query: 84 NRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKDR 143
+RLRPLSY DV ++ FS+ S S ENI +KW PE++H+ P+VPI+LVG K DLR D
Sbjct: 65 DRLRPLSYPDTDVILMCFSIDSPDSLENIP-EKWTPEVKHFCPNVPIILVGNKKDLRNDE 123
Query: 144 Q 144
Sbjct: 124 H 124
>pdb|1OW3|B Chain B, Crystal Structure Of Rhoa.Gdp.Mgf3-In Complex With Rhogap
pdb|1FTN|A Chain A, Crystal Structure Of The Human RhoaGDP COMPLEX
Length = 193
Score = 150 bits (378), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 71/121 (58%), Positives = 88/121 (72%), Gaps = 1/121 (0%)
Query: 24 KCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDY 83
K V V DGA GKTCLLI + + FP YVPTVF+N+ A++ VDG+ V L LWDTAGQEDY
Sbjct: 7 KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDY 66
Query: 84 NRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKDR 143
+RLRPLSY DV ++ FS+ S S ENI +KW PE++H+ P+VPI+LVG K DLR D
Sbjct: 67 DRLRPLSYPDTDVILMCFSIDSPDSLENIP-EKWTPEVKHFCPNVPIILVGNKKDLRNDE 125
Query: 144 Q 144
Sbjct: 126 H 126
>pdb|1TX4|B Chain B, RhoRHOGAPGDP(DOT)ALF4 COMPLEX
Length = 177
Score = 150 bits (378), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 71/121 (58%), Positives = 88/121 (72%), Gaps = 1/121 (0%)
Query: 24 KCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDY 83
K V V DGA GKTCLLI + + FP YVPTVF+N+ A++ VDG+ V L LWDTAGQEDY
Sbjct: 5 KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDY 64
Query: 84 NRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKDR 143
+RLRPLSY DV ++ FS+ S S ENI +KW PE++H+ P+VPI+LVG K DLR D
Sbjct: 65 DRLRPLSYPDTDVILMCFSIDSPDSLENIP-EKWTPEVKHFCPNVPIILVGNKKDLRNDE 123
Query: 144 Q 144
Sbjct: 124 H 124
>pdb|1CC0|A Chain A, Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex
pdb|1CC0|C Chain C, Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex
Length = 190
Score = 150 bits (378), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 71/121 (58%), Positives = 88/121 (72%), Gaps = 1/121 (0%)
Query: 24 KCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDY 83
K V V DGA GKTCLLI + + FP YVPTVF+N+ A++ VDG+ V L LWDTAGQEDY
Sbjct: 7 KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDY 66
Query: 84 NRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKDR 143
+RLRPLSY DV ++ FS+ S S ENI +KW PE++H+ P+VPI+LVG K DLR D
Sbjct: 67 DRLRPLSYPDTDVILMCFSIDSPDSLENIP-EKWTPEVKHFCPNVPIILVGNKKDLRNDE 125
Query: 144 Q 144
Sbjct: 126 H 126
>pdb|1CXZ|A Chain A, Crystal Structure Of Human Rhoa Complexed With The
Effector Domain Of The Protein Kinase PknPRK1
pdb|1A2B|A Chain A, Human Rhoa Complexed With Gtp Analogue
Length = 182
Score = 148 bits (374), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 70/121 (57%), Positives = 88/121 (72%), Gaps = 1/121 (0%)
Query: 24 KCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDY 83
K V V D A GKTCLLI ++ + FP YVPTVF+N+ A++ VDG+ V L LWDTAGQEDY
Sbjct: 8 KLVIVGDVACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDY 67
Query: 84 NRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKDR 143
+RLRPLSY DV ++ FS+ S S ENI +KW PE++H+ P+VPI+LVG K DLR D
Sbjct: 68 DRLRPLSYPDTDVILMCFSIDSPDSLENIP-EKWTPEVKHFCPNVPIILVGNKKDLRNDE 126
Query: 144 Q 144
Sbjct: 127 H 127
>pdb|1DPF|A Chain A, Crystal Structure Of A Mg-Free Form Of Rhoa Complexed With
Gdp
Length = 180
Score = 146 bits (369), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 69/121 (57%), Positives = 87/121 (71%), Gaps = 1/121 (0%)
Query: 24 KCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDY 83
K V V D A GKTCLLI ++ + FP YVPTVF+N+ A++ VDG+ V L LWDTAGQEDY
Sbjct: 7 KLVIVGDVACGKTCLLIVFSKDQFPAVYVPTVFENYVADIEVDGKQVELALWDTAGQEDY 66
Query: 84 NRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKDR 143
+R RPLSY DV ++ FS+ S S ENI +KW PE++H+ P+VPI+LVG K DLR D
Sbjct: 67 DRARPLSYPDTDVILMCFSIDSPDSLENIP-EKWTPEVKHFCPNVPIILVGNKKDLRNDE 125
Query: 144 Q 144
Sbjct: 126 H 126
>pdb|1KMQ|A Chain A, Crystal Structure Of A Constitutively Activated Rhoa
Mutant (Q63l)
Length = 184
Score = 146 bits (369), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 70/121 (57%), Positives = 87/121 (71%), Gaps = 1/121 (0%)
Query: 24 KCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDY 83
K V V DGA GKTCLLI + + FP YVPTVF+N+ A++ VDG+ V L LWDTAG EDY
Sbjct: 10 KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDY 69
Query: 84 NRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKDR 143
+RLRPLSY DV ++ FS+ S S ENI +KW PE++H+ P+VPI+LVG K DLR D
Sbjct: 70 DRLRPLSYPDTDVILMCFSIDSPDSLENIP-EKWTPEVKHFCPNVPIILVGNKKDLRNDE 128
Query: 144 Q 144
Sbjct: 129 H 129
>pdb|3A58|B Chain B, Crystal Structure Of Sec3p - Rho1p Complex From
Saccharomyces Cerevisiae
pdb|3A58|D Chain D, Crystal Structure Of Sec3p - Rho1p Complex From
Saccharomyces Cerevisiae
pdb|3A58|F Chain F, Crystal Structure Of Sec3p - Rho1p Complex From
Saccharomyces Cerevisiae
Length = 188
Score = 142 bits (357), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 69/121 (57%), Positives = 87/121 (71%), Gaps = 1/121 (0%)
Query: 24 KCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDY 83
K V V DGA GKTCLLI + FP YVPTVF+N+ A+V VDGR V L LWDTAGQEDY
Sbjct: 12 KLVIVGDGACGKTCLLIVNSKGQFPEVYVPTVFENYVADVEVDGRRVELALWDTAGQEDY 71
Query: 84 NRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKDR 143
+RLRPLSY ++V ++ FS+ S EN+ ++KW+ E+ H+ VPI+LVG K+DLR D
Sbjct: 72 DRLRPLSYPDSNVVLICFSIDLPDSLENV-QEKWIAEVLHFCQGVPIILVGCKVDLRNDP 130
Query: 144 Q 144
Q
Sbjct: 131 Q 131
>pdb|4DVG|A Chain A, Crystal Structure Of E. Histolytica Formin1 Bound To
Ehrho1-Gtpgammas
Length = 188
Score = 137 bits (346), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 67/122 (54%), Positives = 87/122 (71%), Gaps = 1/122 (0%)
Query: 21 KFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQ 80
K +K V V DGAVGKTCLL++++ PT YVPTVF+NFS + L LWDTAGQ
Sbjct: 21 KALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFSHVMKYKNEEFILHLWDTAGQ 80
Query: 81 EDYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLR 140
E+Y+RLRPLSY +DV +L F++ +R S++NIS KW PE++HY + VLVG K+DLR
Sbjct: 81 EEYDRLRPLSYADSDVVLLCFAVNNRTSFDNIS-TKWEPEIKHYIDTAKTVLVGLKVDLR 139
Query: 141 KD 142
KD
Sbjct: 140 KD 141
>pdb|3REF|B Chain B, Crystal Structure Of Ehrho1 Bound To Gdp And Magnesium
pdb|3REF|A Chain A, Crystal Structure Of Ehrho1 Bound To Gdp And Magnesium
pdb|3REG|A Chain A, Crystal Structure Of Ehrho1 Bound To A Gtp Analog And
Magnesium
pdb|3REG|B Chain B, Crystal Structure Of Ehrho1 Bound To A Gtp Analog And
Magnesium
Length = 194
Score = 137 bits (345), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 67/122 (54%), Positives = 87/122 (71%), Gaps = 1/122 (0%)
Query: 21 KFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQ 80
K +K V V DGAVGKTCLL++++ PT YVPTVF+NFS + L LWDTAGQ
Sbjct: 22 KALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFSHVMKYKNEEFILHLWDTAGQ 81
Query: 81 EDYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLR 140
E+Y+RLRPLSY +DV +L F++ +R S++NIS KW PE++HY + VLVG K+DLR
Sbjct: 82 EEYDRLRPLSYADSDVVLLCFAVNNRTSFDNIS-TKWEPEIKHYIDTAKTVLVGLKVDLR 140
Query: 141 KD 142
KD
Sbjct: 141 KD 142
>pdb|2J1L|A Chain A, Crystal Structure Of Human Rho-Related Gtp-Binding Protein
Rhod
Length = 214
Score = 126 bits (316), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 59/123 (47%), Positives = 80/123 (65%), Gaps = 1/123 (0%)
Query: 23 IKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQED 82
+K V V DG GKT LL+ + FP Y PTVF+ + N+ V G+ V+L +WDTAGQ+D
Sbjct: 35 VKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERYMVNLQVKGKPVHLHIWDTAGQDD 94
Query: 83 YNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKD 142
Y+RLRPL Y A V +L F + S S++NI +W PE+ H+ VPI++VG K DLRKD
Sbjct: 95 YDRLRPLFYPDASVLLLCFDVTSPNSFDNIF-NRWYPEVNHFCKKVPIIVVGCKTDLRKD 153
Query: 143 RQF 145
+
Sbjct: 154 KSL 156
>pdb|2V55|B Chain B, Mechanism Of Multi-site Phosphorylation From A Rock-i:rhoe
Complex Structure
pdb|2V55|D Chain D, Mechanism Of Multi-site Phosphorylation From A Rock-i:rhoe
Complex Structure
Length = 200
Score = 105 bits (262), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 52/122 (42%), Positives = 76/122 (62%), Gaps = 3/122 (2%)
Query: 23 IKC--VTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQ 80
+KC V V D GKT LL + + FP +YVPTVF+N++A+ +D + + L LWDT+G
Sbjct: 22 VKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGS 81
Query: 81 EDYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLR 140
Y+ +RPLSY +D ++ F ISRP + KKW E++ + P+ ++LVG K DLR
Sbjct: 82 PYYDNVRPLSYPDSDAVLICFD-ISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLR 140
Query: 141 KD 142
D
Sbjct: 141 TD 142
>pdb|1M7B|A Chain A, Crystal Structure Of Rnd3RHOE: FUNCTIONAL IMPLICATIONS
Length = 184
Score = 105 bits (262), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 52/122 (42%), Positives = 76/122 (62%), Gaps = 3/122 (2%)
Query: 23 IKC--VTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQ 80
+KC V V D GKT LL + + FP +YVPTVF+N++A+ +D + + L LWDT+G
Sbjct: 6 VKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGS 65
Query: 81 EDYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLR 140
Y+ +RPLSY +D ++ F ISRP + KKW E++ + P+ ++LVG K DLR
Sbjct: 66 PYYDNVRPLSYPDSDAVLICFD-ISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLR 124
Query: 141 KD 142
D
Sbjct: 125 TD 126
>pdb|1GWN|A Chain A, The Crystal Structure Of The Core Domain Of RhoeRND3 - A
Constitutively Activated Small G Protein
pdb|1GWN|C Chain C, The Crystal Structure Of The Core Domain Of RhoeRND3 - A
Constitutively Activated Small G Protein
Length = 205
Score = 105 bits (261), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 52/122 (42%), Positives = 76/122 (62%), Gaps = 3/122 (2%)
Query: 23 IKC--VTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQ 80
+KC V V D GKT LL + + FP +YVPTVF+N++A+ +D + + L LWDT+G
Sbjct: 27 VKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGS 86
Query: 81 EDYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLR 140
Y+ +RPLSY +D ++ F ISRP + KKW E++ + P+ ++LVG K DLR
Sbjct: 87 PYYDNVRPLSYPDSDAVLICFD-ISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLR 145
Query: 141 KD 142
D
Sbjct: 146 TD 147
>pdb|2CLS|A Chain A, The Crystal Structure Of The Human Rnd1 Gtpase In The
Active Gtp Bound State
pdb|2CLS|B Chain B, The Crystal Structure Of The Human Rnd1 Gtpase In The
Active Gtp Bound State
Length = 198
Score = 100 bits (249), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 55/139 (39%), Positives = 76/139 (54%), Gaps = 3/139 (2%)
Query: 23 IKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQED 82
K V V D GKT +L + +P YVPTVF+N++A + + + V L LWDT+G
Sbjct: 12 CKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTACLETEEQRVELSLWDTSGSPY 71
Query: 83 YNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKD 142
Y+ +RPL Y +D +L F ISRP + + KKW E+ Y PS ++L+G K DLR D
Sbjct: 72 YDNVRPLCYSDSDAVLLCFD-ISRPETVDSALKKWRTEILDYCPSTRVLLIGCKTDLRTD 130
Query: 143 RQ--FHLDYPGAYTISTEQ 159
L + IS EQ
Sbjct: 131 LSTLMELSHQKQAPISYEQ 149
>pdb|2REX|B Chain B, Crystal Structure Of The Effector Domain Of Plxnb1 Bound
With Rnd1 Gtpase
pdb|2REX|D Chain D, Crystal Structure Of The Effector Domain Of Plxnb1 Bound
With Rnd1 Gtpase
Length = 197
Score = 100 bits (248), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 55/139 (39%), Positives = 76/139 (54%), Gaps = 3/139 (2%)
Query: 23 IKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQED 82
K V V D GKT +L + +P YVPTVF+N++A + + + V L LWDT+G
Sbjct: 11 CKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTACLETEEQRVELSLWDTSGSPY 70
Query: 83 YNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKD 142
Y+ +RPL Y +D +L F ISRP + + KKW E+ Y PS ++L+G K DLR D
Sbjct: 71 YDNVRPLCYSDSDAVLLCFD-ISRPETVDSALKKWRTEILDYCPSTRVLLIGCKTDLRTD 129
Query: 143 RQ--FHLDYPGAYTISTEQ 159
L + IS EQ
Sbjct: 130 LSTLMELSHQKQAPISYEQ 148
>pdb|3Q3J|B Chain B, Crystal Structure Of Plexin A2 Rbd In Complex With Rnd1
Length = 214
Score = 100 bits (248), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 55/139 (39%), Positives = 76/139 (54%), Gaps = 3/139 (2%)
Query: 23 IKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQED 82
K V V D GKT +L + +P YVPTVF+N++A + + + V L LWDT+G
Sbjct: 28 CKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTACLETEEQRVELSLWDTSGSPY 87
Query: 83 YNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKD 142
Y+ +RPL Y +D +L F ISRP + + KKW E+ Y PS ++L+G K DLR D
Sbjct: 88 YDNVRPLCYSDSDAVLLCFD-ISRPETVDSALKKWRTEILDYCPSTRVLLIGCKTDLRTD 146
Query: 143 RQ--FHLDYPGAYTISTEQ 159
L + IS EQ
Sbjct: 147 LSTLMELSHQKQAPISYEQ 165
>pdb|1YZU|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution
pdb|1YZU|B Chain B, Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution
pdb|1Z0I|A Chain A, Gdp-Bound Rab21 Gtpase
pdb|2OT3|B Chain B, Crystal Structure Of Rabex-5 Vps9 Domain In Complex With
Nucleotide Free Rab21
Length = 170
Score = 89.0 bits (219), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 46/135 (34%), Positives = 76/135 (56%), Gaps = 4/135 (2%)
Query: 24 KCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNF-SANVMVDGRTVNLGLWDTAGQED 82
K V + +G VGKT L++ Y N F ++ T+ +F + + + G+ VNL +WDTAGQE
Sbjct: 8 KVVLLGEGCVGKTSLVLRYCENKFNDKHITTLQASFLTKKLNIGGKRVNLAIWDTAGQER 67
Query: 83 YNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHY-APSVPIVLVGTKLDLRK 141
++ L P+ YR ++ IL + + S++ + K WV ELR + + +VG K+DL K
Sbjct: 68 FHALGPIYYRDSNGAILVYDITDEDSFQKV--KNWVKELRKMLGNEICLCIVGNKIDLEK 125
Query: 142 DRQFHLDYPGAYTIS 156
+R + +Y S
Sbjct: 126 ERHVSIQEAESYAES 140
>pdb|2F9L|A Chain A, 3d Structure Of Inactive Human Rab11b Gtpase
pdb|2F9M|A Chain A, 3d Structure Of Active Human Rab11b Gtpase
Length = 199
Score = 89.0 bits (219), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 51/134 (38%), Positives = 75/134 (55%), Gaps = 4/134 (2%)
Query: 22 FIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSA-NVMVDGRTVNLGLWDTAGQ 80
K V + D VGK+ LL +T N F + T+ F+ ++ VDG+T+ +WDTAGQ
Sbjct: 5 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQ 64
Query: 81 EDYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPS-VPIVLVGTKLDL 139
E Y R+ YRGA +L + + +YEN+ ++W+ ELR +A S + I+LVG K DL
Sbjct: 65 ERYRRITSAYYRGAVGALLVYDIAKHLTYENV--ERWLKELRDHADSNIVIMLVGNKSDL 122
Query: 140 RKDRQFHLDYPGAY 153
R R D A+
Sbjct: 123 RHLRAVPTDEARAF 136
>pdb|1Z08|A Chain A, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
pdb|1Z08|B Chain B, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
pdb|1Z08|C Chain C, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
pdb|1Z08|D Chain D, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
Length = 170
Score = 89.0 bits (219), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 46/135 (34%), Positives = 76/135 (56%), Gaps = 4/135 (2%)
Query: 24 KCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNF-SANVMVDGRTVNLGLWDTAGQED 82
K V + +G VGKT L++ Y N F ++ T+ +F + + + G+ VNL +WDTAGQE
Sbjct: 8 KVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQER 67
Query: 83 YNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHY-APSVPIVLVGTKLDLRK 141
++ L P+ YR ++ IL + + S++ + K WV ELR + + +VG K+DL K
Sbjct: 68 FHALGPIYYRDSNGAILVYDITDEDSFQKV--KNWVKELRKMLGNEICLCIVGNKIDLEK 125
Query: 142 DRQFHLDYPGAYTIS 156
+R + +Y S
Sbjct: 126 ERHVSIQEAESYAES 140
>pdb|1YZT|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution
pdb|1YZT|B Chain B, Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution
Length = 184
Score = 88.6 bits (218), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 46/135 (34%), Positives = 76/135 (56%), Gaps = 4/135 (2%)
Query: 24 KCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNF-SANVMVDGRTVNLGLWDTAGQED 82
K V + +G VGKT L++ Y N F ++ T+ +F + + + G+ VNL +WDTAGQE
Sbjct: 22 KVVLLGEGCVGKTSLVLRYCENKFNDKHITTLQASFLTKKLNIGGKRVNLAIWDTAGQER 81
Query: 83 YNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHY-APSVPIVLVGTKLDLRK 141
++ L P+ YR ++ IL + + S++ + K WV ELR + + +VG K+DL K
Sbjct: 82 FHALGPIYYRDSNGAILVYDITDEDSFQKV--KNWVKELRKMLGNEICLCIVGNKIDLEK 139
Query: 142 DRQFHLDYPGAYTIS 156
+R + +Y S
Sbjct: 140 ERHVSIQEAESYAES 154
>pdb|2OCB|A Chain A, Crystal Structure Of Human Rab9b In Complex With A Gtp
Analogue
Length = 180
Score = 87.4 bits (215), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 51/129 (39%), Positives = 73/129 (56%), Gaps = 9/129 (6%)
Query: 22 FIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNF-SANVMVDGRTVNLGLWDTAGQ 80
+K + + DG VGK+ L+ Y N F + T+ F + ++ VDGR V L +WDTAGQ
Sbjct: 7 LLKVILLGDGGVGKSSLMNRYVTNKFDSQAFHTIGVEFLNRDLEVDGRFVTLQIWDTAGQ 66
Query: 81 EDYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYA-----PSVPIVLVGT 135
E + LR YRGAD +L FS+ R S+EN+ W E +YA P V++G
Sbjct: 67 ERFKSLRTPFYRGADCCLLTFSVDDRQSFENLG--NWQKEFIYYADVKDPEHFPFVVLGN 124
Query: 136 KLDLRKDRQ 144
K+D ++DRQ
Sbjct: 125 KVD-KEDRQ 132
>pdb|1UKV|Y Chain Y, Structure Of Rabgdp-Dissociation Inhibitor In Complex With
Prenylated Ypt1 Gtpase
pdb|3CUE|F Chain F, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|L Chain L, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|R Chain R, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|X Chain X, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
Length = 206
Score = 86.7 bits (213), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 44/134 (32%), Positives = 74/134 (55%), Gaps = 4/134 (2%)
Query: 22 FIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFS-ANVMVDGRTVNLGLWDTAGQ 80
K + + + VGK+CLL+ ++ +T+ DY+ T+ +F V +DG+TV L +WDTAGQ
Sbjct: 8 LFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQ 67
Query: 81 EDYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPI-VLVGTKLDL 139
E + + YRG+ I+ + + + S+ + K W+ E+ YA S + +LVG K DL
Sbjct: 68 ERFRTITSSYYRGSHGIIIVYDVTDQESFNGV--KMWLQEIDRYATSTVLKLLVGNKCDL 125
Query: 140 RKDRQFHLDYPGAY 153
+ R D +
Sbjct: 126 KDKRVVEYDVAKEF 139
>pdb|1YZK|A Chain A, Gppnhp Bound Rab11 Gtpase
Length = 184
Score = 86.7 bits (213), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 50/134 (37%), Positives = 74/134 (55%), Gaps = 4/134 (2%)
Query: 22 FIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSA-NVMVDGRTVNLGLWDTAGQ 80
K V + D VGK+ LL +T N F + T+ F+ ++ VDG+T+ +WDTAGQ
Sbjct: 20 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQ 79
Query: 81 EDYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPS-VPIVLVGTKLDL 139
E Y + YRGA +L + + +YEN+ ++W+ ELR +A S + I+LVG K DL
Sbjct: 80 ERYRAITSAYYRGAVGALLVYDIAKHLTYENV--ERWLKELRDHADSNIVIMLVGNKSDL 137
Query: 140 RKDRQFHLDYPGAY 153
R R D A+
Sbjct: 138 RHLRAVPTDEARAF 151
>pdb|2BCG|Y Chain Y, Structure Of Doubly Prenylated Ypt1:gdi Complex
Length = 206
Score = 86.3 bits (212), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 44/134 (32%), Positives = 74/134 (55%), Gaps = 4/134 (2%)
Query: 22 FIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFS-ANVMVDGRTVNLGLWDTAGQ 80
K + + + VGK+CLL+ ++ +T+ DY+ T+ +F V +DG+TV L +WDTAGQ
Sbjct: 8 LFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQ 67
Query: 81 EDYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPI-VLVGTKLDL 139
E + + YRG+ I+ + + + S+ + K W+ E+ YA S + +LVG K DL
Sbjct: 68 ERFRTITSSYYRGSHGIIIVYDVTDQESFNGV--KMWLQEIDRYATSTVLKLLVGNKCDL 125
Query: 140 RKDRQFHLDYPGAY 153
+ R D +
Sbjct: 126 KDKRVVEYDVAKEF 139
>pdb|1OIV|A Chain A, X-Ray Structure Of The Small G Protein Rab11a In Complex
With Gdp
pdb|1OIV|B Chain B, X-Ray Structure Of The Small G Protein Rab11a In Complex
With Gdp
Length = 191
Score = 86.3 bits (212), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 50/134 (37%), Positives = 74/134 (55%), Gaps = 4/134 (2%)
Query: 22 FIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSA-NVMVDGRTVNLGLWDTAGQ 80
K V + D VGK+ LL +T N F + T+ F+ ++ VDG+T+ +WDTAGQ
Sbjct: 29 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQ 88
Query: 81 EDYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPS-VPIVLVGTKLDL 139
E Y + YRGA +L + + +YEN+ ++W+ ELR +A S + I+LVG K DL
Sbjct: 89 ERYRAITSAYYRGAVGALLVYDIAKHLTYENV--ERWLKELRDHADSNIVIMLVGNKSDL 146
Query: 140 RKDRQFHLDYPGAY 153
R R D A+
Sbjct: 147 RHLRAVPTDEARAF 160
>pdb|1YZN|A Chain A, Gppnhp-Bound Ypt1p Gtpase
Length = 185
Score = 85.9 bits (211), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 44/129 (34%), Positives = 73/129 (56%), Gaps = 4/129 (3%)
Query: 22 FIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFS-ANVMVDGRTVNLGLWDTAGQ 80
K + + + VGK+CLL+ ++ +T+ DY+ T+ +F V +DG+TV L +WDTAGQ
Sbjct: 21 LFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQ 80
Query: 81 EDYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPI-VLVGTKLDL 139
E + + YRG+ I+ + + + S+ + K W+ E+ YA S + +LVG K DL
Sbjct: 81 ERFRTITSSYYRGSHGIIIVYDVTDQESFNGV--KMWLQEIDRYATSTVLKLLVGNKCDL 138
Query: 140 RKDRQFHLD 148
+ R D
Sbjct: 139 KDKRVVEYD 147
>pdb|4I1O|A Chain A, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
pdb|4I1O|C Chain C, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
pdb|4I1O|E Chain E, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
pdb|4I1O|G Chain G, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
Length = 181
Score = 85.1 bits (209), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 43/120 (35%), Positives = 70/120 (58%), Gaps = 4/120 (3%)
Query: 22 FIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSA-NVMVDGRTVNLGLWDTAGQ 80
K + + D VGK+CLL+ + +T+ Y+ T+ +F + +DG+T+ L +WDTAGQ
Sbjct: 9 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQ 68
Query: 81 EDYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYA-PSVPIVLVGTKLDL 139
E + + YRGA I+ + + + SY N+ K+W+ E+ YA +V +LVG K DL
Sbjct: 69 ERFRTITSSYYRGAHGIIVVYDVTDQESYANV--KQWLQEIDRYASENVNKLLVGNKSDL 126
>pdb|3JZA|A Chain A, Crystal Structure Of Human Rab1b In Complex With The Gef
Domain Of DrraSIDM FROM LEGIONELLA PNEUMOPHILA
pdb|3NKV|A Chain A, Crystal Structure Of Rab1b Covalently Modified With Amp At
Y77
pdb|3NKV|B Chain B, Crystal Structure Of Rab1b Covalently Modified With Amp At
Y77
pdb|4HLQ|B Chain B, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|D Chain D, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|F Chain F, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|H Chain H, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|J Chain J, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
Length = 175
Score = 85.1 bits (209), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 43/120 (35%), Positives = 70/120 (58%), Gaps = 4/120 (3%)
Query: 22 FIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSA-NVMVDGRTVNLGLWDTAGQ 80
K + + D VGK+CLL+ + +T+ Y+ T+ +F + +DG+T+ L +WDTAGQ
Sbjct: 9 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQ 68
Query: 81 EDYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYA-PSVPIVLVGTKLDL 139
E + + YRGA I+ + + + SY N+ K+W+ E+ YA +V +LVG K DL
Sbjct: 69 ERFRTITSSYYRGAHGIIVVYDVTDQESYANV--KQWLQEIDRYASENVNKLLVGNKSDL 126
>pdb|4FMD|F Chain F, Espg-Rab1 Complex Structure At 3.05 A
Length = 164
Score = 84.3 bits (207), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 42/118 (35%), Positives = 70/118 (59%), Gaps = 4/118 (3%)
Query: 24 KCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSA-NVMVDGRTVNLGLWDTAGQED 82
K + + D VGK+CLL+ + +T+ Y+ T+ +F + +DG+T+ L +WDTAGQE
Sbjct: 1 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQER 60
Query: 83 YNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYA-PSVPIVLVGTKLDL 139
+ + YRGA I+ + + + S+ N+ K+W+ E+ YA +V +LVG K DL
Sbjct: 61 FRTITSSYYRGAHGIIVVYDVTDQESFNNV--KQWLQEIDRYASENVNKLLVGNKCDL 116
>pdb|4FMB|B Chain B, Vira-Rab1 Complex Structure
pdb|4FMB|D Chain D, Vira-Rab1 Complex Structure
pdb|4FMB|F Chain F, Vira-Rab1 Complex Structure
Length = 171
Score = 84.3 bits (207), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 42/120 (35%), Positives = 70/120 (58%), Gaps = 4/120 (3%)
Query: 22 FIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSA-NVMVDGRTVNLGLWDTAGQ 80
K + + D VGK+CLL+ + +T+ Y+ T+ +F + +DG+T+ L +WDTAGQ
Sbjct: 6 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQ 65
Query: 81 EDYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYA-PSVPIVLVGTKLDL 139
E + + YRGA I+ + + + S+ N+ K+W+ E+ YA +V +LVG K DL
Sbjct: 66 ERFRTITSSYYRGAHGIIVVYDVTDQESFNNV--KQWLQEIDRYASENVNKLLVGNKCDL 123
>pdb|4FMC|B Chain B, Espg-Rab1 Complex
pdb|4FMC|D Chain D, Espg-Rab1 Complex
pdb|4FMD|B Chain B, Espg-Rab1 Complex Structure At 3.05 A
pdb|4FMD|D Chain D, Espg-Rab1 Complex Structure At 3.05 A
pdb|4FME|B Chain B, Espg-Rab1-Arf6 Complex
pdb|4FME|E Chain E, Espg-Rab1-Arf6 Complex
Length = 171
Score = 84.3 bits (207), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 42/120 (35%), Positives = 70/120 (58%), Gaps = 4/120 (3%)
Query: 22 FIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSA-NVMVDGRTVNLGLWDTAGQ 80
K + + D VGK+CLL+ + +T+ Y+ T+ +F + +DG+T+ L +WDTAGQ
Sbjct: 6 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQ 65
Query: 81 EDYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYA-PSVPIVLVGTKLDL 139
E + + YRGA I+ + + + S+ N+ K+W+ E+ YA +V +LVG K DL
Sbjct: 66 ERFRTITSSYYRGAHGIIVVYDVTDQESFNNV--KQWLQEIDRYASENVNKLLVGNKCDL 123
>pdb|2RHD|A Chain A, Crystal Structure Of Cryptosporidium Parvum Small Gtpase
Rab1a
Length = 175
Score = 84.0 bits (206), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 43/124 (34%), Positives = 71/124 (57%), Gaps = 4/124 (3%)
Query: 22 FIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSA-NVMVDGRTVNLGLWDTAGQ 80
K + + D VGK+CLL+ + +T+ Y+ T+ +F + ++ +TV L +WDTAGQ
Sbjct: 9 LFKLLLIGDSGVGKSCLLLRFADDTYTDSYISTIGVDFKIRTISLENKTVKLQIWDTAGQ 68
Query: 81 EDYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYA-PSVPIVLVGTKLDL 139
E + + YRGA I+ + + R S++N+ K+W+ E+ YA +V +LVG K DL
Sbjct: 69 ERFRTITSSYYRGAHGIIIVYDVTDRDSFDNV--KQWIQEIDRYAMENVNKLLVGNKCDL 126
Query: 140 RKDR 143
R
Sbjct: 127 VSKR 130
>pdb|3L0I|B Chain B, Complex Structure Of Sidm/drra With The Wild Type Rab1
pdb|3L0I|D Chain D, Complex Structure Of Sidm/drra With The Wild Type Rab1
Length = 199
Score = 84.0 bits (206), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 42/120 (35%), Positives = 70/120 (58%), Gaps = 4/120 (3%)
Query: 22 FIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSA-NVMVDGRTVNLGLWDTAGQ 80
K + + D VGK+CLL+ + +T+ Y+ T+ +F + +DG+T+ L +WDTAGQ
Sbjct: 33 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQ 92
Query: 81 EDYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYA-PSVPIVLVGTKLDL 139
E + + YRGA I+ + + + S+ N+ K+W+ E+ YA +V +LVG K DL
Sbjct: 93 ERFRTITSSYYRGAHGIIVVYDVTDQESFNNV--KQWLQEIDRYASENVNKLLVGNKCDL 150
>pdb|2FOL|A Chain A, Crystal Structure Of Human Rab1a In Complex With Gdp
Length = 191
Score = 84.0 bits (206), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 42/120 (35%), Positives = 70/120 (58%), Gaps = 4/120 (3%)
Query: 22 FIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSA-NVMVDGRTVNLGLWDTAGQ 80
K + + D VGK+CLL+ + +T+ Y+ T+ +F + +DG+T+ L +WDTAGQ
Sbjct: 25 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQ 84
Query: 81 EDYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYA-PSVPIVLVGTKLDL 139
E + + YRGA I+ + + + S+ N+ K+W+ E+ YA +V +LVG K DL
Sbjct: 85 ERFRTITSSYYRGAHGIIVVYDVTDQESFNNV--KQWLQEIDRYASENVNKLLVGNKCDL 142
>pdb|2WWX|A Chain A, Crystal Structure Of The SidmDRRA(GEFGDF DOMAIN)-Rab1
(Gtpase Domain) Complex
Length = 175
Score = 83.6 bits (205), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 42/120 (35%), Positives = 70/120 (58%), Gaps = 4/120 (3%)
Query: 22 FIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSA-NVMVDGRTVNLGLWDTAGQ 80
K + + D VGK+CLL+ + +T+ Y+ T+ +F + +DG+T+ L +WDTAGQ
Sbjct: 8 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQ 67
Query: 81 EDYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYA-PSVPIVLVGTKLDL 139
E + + YRGA I+ + + + S+ N+ K+W+ E+ YA +V +LVG K DL
Sbjct: 68 ERFRTITSSYYRGAHGIIVVYDVTDQESFNNV--KQWLQEIDRYASENVNKLLVGIKCDL 125
>pdb|3TKL|A Chain A, Crystal Structure Of The Gtp-Bound Rab1a In Complex With
The Coiled- Coil Domain Of Lida From Legionella
Pneumophila
Length = 196
Score = 83.6 bits (205), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 42/120 (35%), Positives = 70/120 (58%), Gaps = 4/120 (3%)
Query: 22 FIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSA-NVMVDGRTVNLGLWDTAGQ 80
K + + D VGK+CLL+ + +T+ Y+ T+ +F + +DG+T+ L +WDTAGQ
Sbjct: 16 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQ 75
Query: 81 EDYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYA-PSVPIVLVGTKLDL 139
E + + YRGA I+ + + + S+ N+ K+W+ E+ YA +V +LVG K DL
Sbjct: 76 ERFRTITSSYYRGAHGIIVVYDVTDQESFNNV--KQWLQEIDRYASENVNKLLVGNKCDL 133
>pdb|2HV8|A Chain A, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3
pdb|2HV8|B Chain B, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3
pdb|2HV8|C Chain C, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3
Length = 172
Score = 83.6 bits (205), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 49/134 (36%), Positives = 73/134 (54%), Gaps = 4/134 (2%)
Query: 22 FIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSA-NVMVDGRTVNLGLWDTAGQ 80
K V + D VGK+ LL +T N F + T+ F+ ++ VDG+T+ +WDTAG
Sbjct: 8 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGL 67
Query: 81 EDYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPS-VPIVLVGTKLDL 139
E Y + YRGA +L + + +YEN+ ++W+ ELR +A S + I+LVG K DL
Sbjct: 68 ERYRAITSAYYRGAVGALLVYDIAKHLTYENV--ERWLKELRDHADSNIVIMLVGNKSDL 125
Query: 140 RKDRQFHLDYPGAY 153
R R D A+
Sbjct: 126 RHLRAVPTDEARAF 139
>pdb|3SFV|A Chain A, Crystal Structure Of The Gdp-Bound Rab1a S25n Mutant In
Complex With The Coiled-Coil Domain Of Lida From
Legionella Pneumophila
Length = 181
Score = 83.2 bits (204), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 42/120 (35%), Positives = 69/120 (57%), Gaps = 4/120 (3%)
Query: 22 FIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSA-NVMVDGRTVNLGLWDTAGQ 80
K + + D VGK CLL+ + +T+ Y+ T+ +F + +DG+T+ L +WDTAGQ
Sbjct: 16 LFKLLLIGDSGVGKNCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQ 75
Query: 81 EDYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYA-PSVPIVLVGTKLDL 139
E + + YRGA I+ + + + S+ N+ K+W+ E+ YA +V +LVG K DL
Sbjct: 76 ERFRTITSSYYRGAHGIIVVYDVTDQESFNNV--KQWLQEIDRYASENVNKLLVGNKCDL 133
>pdb|1OIW|A Chain A, X-ray Structure Of The Small G Protein Rab11a In Complex
With Gtpgammas
pdb|1OIX|A Chain A, X-Ray Structure Of The Small G Protein Rab11a In Complex
With Gdp And Pi
Length = 191
Score = 83.2 bits (204), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 49/134 (36%), Positives = 73/134 (54%), Gaps = 4/134 (2%)
Query: 22 FIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSA-NVMVDGRTVNLGLWDTAGQ 80
K V + D VGK+ LL +T N F + T+ F+ ++ VDG+T+ +WDTAG
Sbjct: 29 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGL 88
Query: 81 EDYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPS-VPIVLVGTKLDL 139
E Y + YRGA +L + + +YEN+ ++W+ ELR +A S + I+LVG K DL
Sbjct: 89 ERYRAITSAYYRGAVGALLVYDIAKHLTYENV--ERWLKELRDHADSNIVIMLVGNKSDL 146
Query: 140 RKDRQFHLDYPGAY 153
R R D A+
Sbjct: 147 RHLRAVPTDEARAF 160
>pdb|1WMS|A Chain A, High Resolution Crystal Structure Of Human Rab9 Gtpase: A
Novel Antiviral Drug Target
pdb|1WMS|B Chain B, High Resolution Crystal Structure Of Human Rab9 Gtpase: A
Novel Antiviral Drug Target
Length = 177
Score = 82.8 bits (203), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 49/137 (35%), Positives = 74/137 (54%), Gaps = 9/137 (6%)
Query: 23 IKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNF-SANVMVDGRTVNLGLWDTAGQE 81
K + + DG VGK+ L+ Y N F T T+ F + ++ VDG V + +WDTAGQE
Sbjct: 8 FKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQE 67
Query: 82 DYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYA-----PSVPIVLVGTK 136
+ LR YRG+D +L FS+ S++N+S W E +YA S P V++G K
Sbjct: 68 RFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLS--NWKKEFIYYADVKEPESFPFVILGNK 125
Query: 137 LDLRKDRQFHLDYPGAY 153
+D+ +RQ + A+
Sbjct: 126 IDI-SERQVSTEEAQAW 141
>pdb|1Z22|A Chain A, Gdp-Bound Rab23 Gtpase Crystallized In C222(1) Space Group
pdb|1Z2A|A Chain A, Gdp-Bound Rab23 Gtpase Crystallized In P2(1)2(1)2(1) Space
Group
Length = 168
Score = 82.8 bits (203), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 46/121 (38%), Positives = 63/121 (52%), Gaps = 3/121 (2%)
Query: 23 IKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTV-FDNFSANVMVDGRTVNLGLWDTAGQE 81
IK V V +GAVGK+ ++ Y F DY T+ D + V+ V L LWDTAGQE
Sbjct: 6 IKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQE 65
Query: 82 DYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRK 141
+++ + YRGA +L FS R S+E IS W ++ +P LV K+DL
Sbjct: 66 EFDAITKAYYRGAQACVLVFSTTDRESFEAIS--SWREKVVAEVGDIPTALVQNKIDLLD 123
Query: 142 D 142
D
Sbjct: 124 D 124
>pdb|1S8F|A Chain A, Crystal Structure Of Rab9 Complexed To Gdp Reveals A Dimer
With An Active Conformation Of Switch Ii
pdb|1S8F|B Chain B, Crystal Structure Of Rab9 Complexed To Gdp Reveals A Dimer
With An Active Conformation Of Switch Ii
Length = 177
Score = 82.8 bits (203), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 49/137 (35%), Positives = 74/137 (54%), Gaps = 9/137 (6%)
Query: 23 IKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNF-SANVMVDGRTVNLGLWDTAGQE 81
K + + DG VGK+ L+ Y N F T T+ F + ++ VDG V + +WDTAGQE
Sbjct: 10 FKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQE 69
Query: 82 DYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYA-----PSVPIVLVGTK 136
+ LR YRG+D +L FS+ S++N+S W E +YA S P V++G K
Sbjct: 70 RFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLS--NWKKEFIYYADVKEPESFPFVILGNK 127
Query: 137 LDLRKDRQFHLDYPGAY 153
+D+ +RQ + A+
Sbjct: 128 IDI-SERQVSTEEAQAW 143
>pdb|2D7C|A Chain A, Crystal Structure Of Human Rab11 In Complex With Fip3 Rab-
Binding Domain
pdb|2D7C|B Chain B, Crystal Structure Of Human Rab11 In Complex With Fip3 Rab-
Binding Domain
Length = 167
Score = 82.8 bits (203), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 49/134 (36%), Positives = 72/134 (53%), Gaps = 4/134 (2%)
Query: 22 FIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSA-NVMVDGRTVNLGLWDTAGQ 80
K V + D VGK+ LL +T N F + T+ F+ ++ VDG+T+ +WDTAG
Sbjct: 5 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGL 64
Query: 81 EDYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPS-VPIVLVGTKLDL 139
E Y + YRGA +L + + +YEN+ ++W+ ELR +A S + I LVG K DL
Sbjct: 65 ERYRAITSAYYRGAVGALLVYDIAKHLTYENV--ERWLKELRDHADSNIVIXLVGNKSDL 122
Query: 140 RKDRQFHLDYPGAY 153
R R D A+
Sbjct: 123 RHLRAVPTDEARAF 136
>pdb|4FMC|F Chain F, Espg-Rab1 Complex
Length = 117
Score = 82.8 bits (203), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 41/114 (35%), Positives = 68/114 (59%), Gaps = 4/114 (3%)
Query: 28 VRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSA-NVMVDGRTVNLGLWDTAGQEDYNRL 86
+ D VGK+CLL+ + +T+ Y+ T+ +F + +DG+T+ L +WDTAGQE + +
Sbjct: 4 IGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTI 63
Query: 87 RPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYA-PSVPIVLVGTKLDL 139
YRGA I+ + + + S+ N+ K+W+ E+ YA +V +LVG K DL
Sbjct: 64 TSSYYRGAHGIIVVYDVTDQESFNNV--KQWLQEIDRYASENVNKLLVGNKCDL 115
>pdb|2GZD|A Chain A, Crystal Structure Of Rab11 In Complex With Rab11-Fip2
pdb|2GZD|B Chain B, Crystal Structure Of Rab11 In Complex With Rab11-Fip2
pdb|2GZH|A Chain A, Crystal Structure Of Rab11 In Complex With Rab11-Family
Interacting Protein 2
Length = 173
Score = 82.4 bits (202), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 49/134 (36%), Positives = 72/134 (53%), Gaps = 4/134 (2%)
Query: 22 FIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSA-NVMVDGRTVNLGLWDTAGQ 80
K V + D VGK+ LL +T N F + T+ F+ ++ VDG+T+ +WDTAG
Sbjct: 11 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGL 70
Query: 81 EDYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPS-VPIVLVGTKLDL 139
E Y + YRGA +L + + +YEN+ ++W+ ELR +A S + I LVG K DL
Sbjct: 71 ERYRAITSAYYRGAVGALLVYDIAKHLTYENV--ERWLKELRDHADSNIVIXLVGNKSDL 128
Query: 140 RKDRQFHLDYPGAY 153
R R D A+
Sbjct: 129 RHLRAVPTDEARAF 142
>pdb|1YZL|A Chain A, Gppnhp-Bound Rab9 Gtpase
Length = 179
Score = 82.0 bits (201), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 49/137 (35%), Positives = 74/137 (54%), Gaps = 9/137 (6%)
Query: 23 IKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNF-SANVMVDGRTVNLGLWDTAGQE 81
K + + DG VGK+ L+ Y N F + T+ F + ++ VDG V + +WDTAGQE
Sbjct: 12 FKIILLGDGGVGKSSLMNRYVTNKFDSQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQE 71
Query: 82 DYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYA-----PSVPIVLVGTK 136
+ LR YRG+D +L FS+ S++N+S W E +YA S P V++G K
Sbjct: 72 RFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLS--NWKKEFIYYADVKEPESFPFVILGNK 129
Query: 137 LDLRKDRQFHLDYPGAY 153
D+ K+RQ + A+
Sbjct: 130 TDI-KERQVSTEEAQAW 145
>pdb|2HEI|A Chain A, Crystal Structure Of Human Rab5b In Complex With Gdp
pdb|2HEI|B Chain B, Crystal Structure Of Human Rab5b In Complex With Gdp
Length = 179
Score = 80.9 bits (198), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 46/133 (34%), Positives = 69/133 (51%), Gaps = 4/133 (3%)
Query: 24 KCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNF-SANVMVDGRTVNLGLWDTAGQED 82
K V + + AVGK+ L++ + F T+ F + +V +D TV +WDTAGQE
Sbjct: 10 KLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQSVCLDDTTVKFEIWDTAGQER 69
Query: 83 YNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPEL-RHYAPSVPIVLVGTKLDLRK 141
Y+ L P+ YRGA I+ + + ++ ++ K WV EL R +PS+ I L G K DL
Sbjct: 70 YHSLAPMYYRGAQAAIVVYDITNQETFAR--AKTWVKELQRQASPSIVIALAGNKADLAN 127
Query: 142 DRQFHLDYPGAYT 154
R + AY
Sbjct: 128 KRMVEYEEAQAYA 140
>pdb|2KE5|A Chain A, Solution Structure And Dynamics Of The Small Gtpase Ralb
In Its Active Conformation: Significance For Effector
Protein Binding
Length = 174
Score = 80.5 bits (197), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 68/122 (55%), Gaps = 1/122 (0%)
Query: 24 KCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDY 83
K + V G VGK+ L + + + F DY PT D++ V++DG V + + DTAG EDY
Sbjct: 5 KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGLEDY 64
Query: 84 NRLRPLSYRGADVFILAFSLISRPSYENISK-KKWVPELRHYAPSVPIVLVGTKLDLRKD 142
+R +R + F+L FS+ S+ ++ ++ + ++ +P+++VG K DL +
Sbjct: 65 AAIRDNYFRSGEGFLLVFSITEHESFTATAEFREQILRVKAEEDKIPLLVVGNKSDLEER 124
Query: 143 RQ 144
RQ
Sbjct: 125 RQ 126
>pdb|2KWI|A Chain A, Ralb-Rlip76 (Ralbp1) Complex
Length = 178
Score = 80.5 bits (197), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 68/122 (55%), Gaps = 1/122 (0%)
Query: 24 KCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDY 83
K + V G VGK+ L + + + F DY PT D++ V++DG V + + DTAG EDY
Sbjct: 9 KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGLEDY 68
Query: 84 NRLRPLSYRGADVFILAFSLISRPSYENISK-KKWVPELRHYAPSVPIVLVGTKLDLRKD 142
+R +R + F+L FS+ S+ ++ ++ + ++ +P+++VG K DL +
Sbjct: 69 AAIRDNYFRSGEGFLLVFSITEHESFTATAEFREQILRVKAEEDKIPLLVVGNKSDLEER 128
Query: 143 RQ 144
RQ
Sbjct: 129 RQ 130
>pdb|1AGP|A Chain A, Three-Dimensional Structures And Properties Of A
Transforming And A Nontransforming Gly-12 Mutant Of
P21-H-Ras
Length = 166
Score = 79.0 bits (193), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 42/116 (36%), Positives = 65/116 (56%)
Query: 24 KCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDY 83
K V V VGK+ L I N F +Y PT+ D++ V++DG T L + DTAGQE+Y
Sbjct: 5 KLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEY 64
Query: 84 NRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDL 139
+ +R R + F+ F++ + S+E+I + + + + VP+VLVG K DL
Sbjct: 65 SAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL 120
>pdb|2G6B|A Chain A, Crystal Structure Of Human Rab26 In Complex With A Gtp
Analogue
Length = 180
Score = 78.6 bits (192), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 44/123 (35%), Positives = 69/123 (56%), Gaps = 5/123 (4%)
Query: 24 KCVTVRDGAVGKTCLLISYTGNTF-PTDYVPTVFDNFSANVM-VDGRTVNLGLWDTAGQE 81
K + V D VGKTCLL+ + F ++ TV +F V+ VDG V L +WDTAGQE
Sbjct: 12 KVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQE 71
Query: 82 DYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAP-SVPIVLVGTKLDLR 140
+ + YR A +L + + ++ S++NI + W+ E+ YA V ++L+G K+D
Sbjct: 72 RFRSVTHAYYRDAHALLLLYDVTNKASFDNI--QAWLTEIHEYAQHDVALMLLGNKVDSA 129
Query: 141 KDR 143
+R
Sbjct: 130 HER 132
>pdb|421P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 78.6 bits (192), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 42/116 (36%), Positives = 65/116 (56%)
Query: 24 KCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDY 83
K V V VGK+ L I N F +Y PT+ D++ V++DG T L + DTAGQE+Y
Sbjct: 5 KLVVVGARGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEY 64
Query: 84 NRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDL 139
+ +R R + F+ F++ + S+E+I + + + + VP+VLVG K DL
Sbjct: 65 SAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL 120
>pdb|4DSO|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
pdb|4DST|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
pdb|4DSU|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
pdb|4DSN|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
Length = 189
Score = 78.2 bits (191), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 42/116 (36%), Positives = 64/116 (55%)
Query: 24 KCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDY 83
K V V VGK+ L I N F +Y PT+ D++ V++DG T L + DTAGQE+Y
Sbjct: 6 KLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEY 65
Query: 84 NRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDL 139
+ +R R + F+ F++ + S+E+I + + + VP+VLVG K DL
Sbjct: 66 SAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDL 121
>pdb|1Z07|A Chain A, Gppnhp-Bound Rab5c G55q Mutant Gtpase
Length = 166
Score = 78.2 bits (191), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 45/132 (34%), Positives = 66/132 (50%), Gaps = 4/132 (3%)
Query: 24 KCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNF-SANVMVDGRTVNLGLWDTAGQED 82
K V + + AVGK+ L++ + F T+ F + V +D TV +WDTAGQE
Sbjct: 7 KLVLLGESAVGKSSLVLRFVKGQFHEYQESTIQAAFLTQTVCLDDTTVKFEIWDTAGQER 66
Query: 83 YNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPEL-RHYAPSVPIVLVGTKLDLRK 141
Y+ L P+ YRGA I+ + + + ++ K WV EL R +P++ I L G K DL
Sbjct: 67 YHSLAPMYYRGAQAAIVVYDITNTDTFAR--AKNWVKELQRQASPNIVIALAGNKADLAS 124
Query: 142 DRQFHLDYPGAY 153
R AY
Sbjct: 125 KRAVEFQEAQAY 136
>pdb|1CLU|A Chain A, H-Ras Complexed With Diaminobenzophenone-Beta,Gamma-Imido-
Gtp
pdb|1JAI|A Chain A, H-Ras P21 Protein Mutant G12p, Complexed With
Guanosine-5'- [beta,Gamma-Methylene] Triphosphate And
Manganese
pdb|1PLJ|A Chain A, Crystallographic Studies On P21h-Ras Using Synchrotron
Laue Method: Improvement Of Crystal Quality And
Monitoring Of The Gtpase Reaction At Different Time
Points
pdb|1PLL|A Chain A, Crystallographic Studies On P21h-Ras Using Synchrotron
Laue Method: Improvement Of Crystal Quality And
Monitoring Of The Gtpase Reaction At Different Time
Points
pdb|821P|A Chain A, Three-Dimensional Structures And Properties Of A
Transforming And A Nontransforming Glycine-12 Mutant Of
P21h-Ras
Length = 166
Score = 78.2 bits (191), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 42/116 (36%), Positives = 65/116 (56%)
Query: 24 KCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDY 83
K V V VGK+ L I N F +Y PT+ D++ V++DG T L + DTAGQE+Y
Sbjct: 5 KLVVVGAPGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEY 64
Query: 84 NRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDL 139
+ +R R + F+ F++ + S+E+I + + + + VP+VLVG K DL
Sbjct: 65 SAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL 120
>pdb|1JAH|A Chain A, H-Ras P21 Protein Mutant G12p, Complexed With
Guanosine-5'- [beta,Gamma-Methylene] Triphosphate And
Magnesium
pdb|1PLK|A Chain A, Crystallographic Studies On P21h-Ras Using Synchrotron
Laue Method: Improvement Of Crystal Quality And
Monitoring Of The Gtpase Reaction At Different Time
Points
Length = 166
Score = 78.2 bits (191), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 42/116 (36%), Positives = 65/116 (56%)
Query: 24 KCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDY 83
K V V VGK+ L I N F +Y PT+ D++ V++DG T L + DTAGQE+Y
Sbjct: 5 KLVVVGAPGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEY 64
Query: 84 NRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDL 139
+ +R R + F+ F++ + S+E+I + + + + VP+VLVG K DL
Sbjct: 65 SAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL 120
>pdb|2A78|A Chain A, Crystal Structure Of The C3bot-Rala Complex Reveals A
Novel Type Of Action Of A Bacterial Exoenzyme
pdb|2A9K|A Chain A, Crystal Structure Of The C3bot-Nad-Rala Complex Reveals A
Novel Type Of Action Of A Bacterial Exoenzyme
Length = 187
Score = 78.2 bits (191), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 41/126 (32%), Positives = 68/126 (53%), Gaps = 2/126 (1%)
Query: 24 KCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDY 83
K + V G VGK+ L + + + F DY PT D++ V++DG V + + DTAGQEDY
Sbjct: 20 KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDY 79
Query: 84 NRLRPLSYRGADVFILAFSLISRPSYENISK-KKWVPELRHYAPSVPIVLVGTKLDLRKD 142
+R +R + F+ FS+ S+ + ++ + ++ +VP +LVG K DL
Sbjct: 80 AAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKE-DENVPFLLVGNKSDLEDK 138
Query: 143 RQFHLD 148
RQ ++
Sbjct: 139 RQVSVE 144
>pdb|1UAD|A Chain A, Crystal Structure Of The Rala-gppnhp-sec5 Ral-binding
Domain Complex
pdb|1UAD|B Chain B, Crystal Structure Of The Rala-gppnhp-sec5 Ral-binding
Domain Complex
Length = 175
Score = 78.2 bits (191), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 41/126 (32%), Positives = 68/126 (53%), Gaps = 2/126 (1%)
Query: 24 KCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDY 83
K + V G VGK+ L + + + F DY PT D++ V++DG V + + DTAGQEDY
Sbjct: 8 KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDY 67
Query: 84 NRLRPLSYRGADVFILAFSLISRPSYENISK-KKWVPELRHYAPSVPIVLVGTKLDLRKD 142
+R +R + F+ FS+ S+ + ++ + ++ +VP +LVG K DL
Sbjct: 68 AAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKE-DENVPFLLVGNKSDLEDK 126
Query: 143 RQFHLD 148
RQ ++
Sbjct: 127 RQVSVE 132
>pdb|1HUQ|A Chain A, 1.8a Crystal Structure Of The Monomeric Gtpase Rab5c
(Mouse)
Length = 164
Score = 77.8 bits (190), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 45/132 (34%), Positives = 66/132 (50%), Gaps = 4/132 (3%)
Query: 24 KCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNF-SANVMVDGRTVNLGLWDTAGQED 82
K V + + AVGK+ L++ + F T+ F + V +D TV +WDTAGQE
Sbjct: 5 KLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQER 64
Query: 83 YNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPEL-RHYAPSVPIVLVGTKLDLRK 141
Y+ L P+ YRGA I+ + + + ++ K WV EL R +P++ I L G K DL
Sbjct: 65 YHSLAPMYYRGAQAAIVVYDITNTDTFAR--AKNWVKELQRQASPNIVIALAGNKADLAS 122
Query: 142 DRQFHLDYPGAY 153
R AY
Sbjct: 123 KRAVEFQEAQAY 134
>pdb|3QBT|A Chain A, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3QBT|C Chain C, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3QBT|E Chain E, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3QBT|G Chain G, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3TNF|A Chain A, Lida From Legionella In Complex With Active Rab8a
Length = 174
Score = 77.8 bits (190), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 70/123 (56%), Gaps = 4/123 (3%)
Query: 24 KCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSA-NVMVDGRTVNLGLWDTAGQED 82
K + + D VGKTC+L ++ + F + ++ T+ +F + +DG+ + L +WDTAGQE
Sbjct: 8 KLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQER 67
Query: 83 YNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPS-VPIVLVGTKLDLRK 141
+ + YRGA +L + + + S++NI + W+ + +A + V +++G K D+
Sbjct: 68 FRTITTAYYRGAMGIMLVYDITNEKSFDNI--RNWIRNIEEHASADVEKMILGNKCDVND 125
Query: 142 DRQ 144
RQ
Sbjct: 126 KRQ 128
>pdb|4EPR|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
Length = 170
Score = 77.8 bits (190), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 42/116 (36%), Positives = 64/116 (55%)
Query: 24 KCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDY 83
K V V VGK+ L I N F +Y PT+ D++ V++DG T L + DTAGQE+Y
Sbjct: 6 KLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEY 65
Query: 84 NRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDL 139
+ +R R + F+ F++ + S+E+I + + + VP+VLVG K DL
Sbjct: 66 SAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKSDL 121
>pdb|1U8Y|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U8Y|B Chain B, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U8Z|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U8Z|B Chain B, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U90|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U90|B Chain B, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
Length = 168
Score = 77.8 bits (190), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 41/126 (32%), Positives = 68/126 (53%), Gaps = 2/126 (1%)
Query: 24 KCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDY 83
K + V G VGK+ L + + + F DY PT D++ V++DG V + + DTAGQEDY
Sbjct: 6 KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDY 65
Query: 84 NRLRPLSYRGADVFILAFSLISRPSYENISK-KKWVPELRHYAPSVPIVLVGTKLDLRKD 142
+R +R + F+ FS+ S+ + ++ + ++ +VP +LVG K DL
Sbjct: 66 AAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKE-DENVPFLLVGNKSDLEDK 124
Query: 143 RQFHLD 148
RQ ++
Sbjct: 125 RQVSVE 130
>pdb|2FU5|C Chain C, Structure Of Rab8 In Complex With Mss4
pdb|2FU5|D Chain D, Structure Of Rab8 In Complex With Mss4
Length = 183
Score = 77.8 bits (190), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 70/123 (56%), Gaps = 4/123 (3%)
Query: 24 KCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSA-NVMVDGRTVNLGLWDTAGQED 82
K + + D VGKTC+L ++ + F + ++ T+ +F + +DG+ + L +WDTAGQE
Sbjct: 10 KLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQER 69
Query: 83 YNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPS-VPIVLVGTKLDLRK 141
+ + YRGA +L + + + S++NI + W+ + +A + V +++G K D+
Sbjct: 70 FRTITTAYYRGAMGIMLVYDITNEKSFDNI--RNWIRNIEEHASADVEKMILGNKCDVND 127
Query: 142 DRQ 144
RQ
Sbjct: 128 KRQ 130
>pdb|2BOV|A Chain A, Molecular Recognition Of An Adp-Ribosylating Clostridium
Botulinum C3 Exoenzyme By Rala Gtpase
Length = 206
Score = 77.4 bits (189), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 41/126 (32%), Positives = 68/126 (53%), Gaps = 2/126 (1%)
Query: 24 KCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDY 83
K + V G VGK+ L + + + F DY PT D++ V++DG V + + DTAGQEDY
Sbjct: 16 KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDY 75
Query: 84 NRLRPLSYRGADVFILAFSLISRPSYENISK-KKWVPELRHYAPSVPIVLVGTKLDLRKD 142
+R +R + F+ FS+ S+ + ++ + ++ +VP +LVG K DL
Sbjct: 76 AAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKE-DENVPFLLVGNKSDLEDK 134
Query: 143 RQFHLD 148
RQ ++
Sbjct: 135 RQVSVE 140
>pdb|1TU3|A Chain A, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|B Chain B, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|C Chain C, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|D Chain D, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|E Chain E, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
Length = 171
Score = 77.4 bits (189), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 45/133 (33%), Positives = 66/133 (49%), Gaps = 4/133 (3%)
Query: 24 KCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNF-SANVMVDGRTVNLGLWDTAGQED 82
K V + + AVGK+ L++ + F T+ F + V +D TV +WDTAGQE
Sbjct: 9 KLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQER 68
Query: 83 YNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPEL-RHYAPSVPIVLVGTKLDLRK 141
Y+ L P+ YRGA I+ + + + S+ K WV EL R +P++ I L G K DL
Sbjct: 69 YHSLAPMYYRGAQAAIVVYDITNEESFAR--AKNWVKELQRQASPNIVIALSGNKADLAN 126
Query: 142 DRQFHLDYPGAYT 154
R +Y
Sbjct: 127 KRAVDFQEAQSYA 139
>pdb|1N6H|A Chain A, Crystal Structure Of Human Rab5a
pdb|1R2Q|A Chain A, Crystal Structure Of Human Rab5a Gtpase Domain At 1.05 A
Resolution
Length = 170
Score = 77.0 bits (188), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 45/133 (33%), Positives = 66/133 (49%), Gaps = 4/133 (3%)
Query: 24 KCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNF-SANVMVDGRTVNLGLWDTAGQED 82
K V + + AVGK+ L++ + F T+ F + V +D TV +WDTAGQE
Sbjct: 8 KLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQER 67
Query: 83 YNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPEL-RHYAPSVPIVLVGTKLDLRK 141
Y+ L P+ YRGA I+ + + + S+ K WV EL R +P++ I L G K DL
Sbjct: 68 YHSLAPMYYRGAQAAIVVYDITNEESFAR--AKNWVKELQRQASPNIVIALSGNKADLAN 125
Query: 142 DRQFHLDYPGAYT 154
R +Y
Sbjct: 126 KRAVDFQEAQSYA 138
>pdb|2ERY|A Chain A, The Crystal Structure Of The Ras Related Protein Rras2
(Rras2) In The Gdp Bound State
pdb|2ERY|B Chain B, The Crystal Structure Of The Ras Related Protein Rras2
(Rras2) In The Gdp Bound State
Length = 172
Score = 76.3 bits (186), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 38/111 (34%), Positives = 63/111 (56%), Gaps = 2/111 (1%)
Query: 35 KTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGA 94
K+ L I + + F TDY PT+ D+++ ++D R L + DTAGQE++ +R R
Sbjct: 18 KSALTIQFIQSYFVTDYDPTIEDSYTKQCVIDDRAARLDILDTAGQEEFGAMREQYMRTG 77
Query: 95 DVFILAFSLISRPSYENISK-KKWVPELRHYAPSVPIVLVGTKLDLRKDRQ 144
+ F+L FS+ R S+E I K ++ + ++ P++L+G K DL RQ
Sbjct: 78 EGFLLVFSVTDRGSFEEIYKFQRQILRVKD-RDEFPMILIGNKADLDHQRQ 127
>pdb|1TU4|A Chain A, Crystal Structure Of Rab5-Gdp Complex
pdb|1TU4|B Chain B, Crystal Structure Of Rab5-Gdp Complex
pdb|1TU4|C Chain C, Crystal Structure Of Rab5-Gdp Complex
pdb|1TU4|D Chain D, Crystal Structure Of Rab5-Gdp Complex
Length = 171
Score = 75.9 bits (185), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 45/133 (33%), Positives = 65/133 (48%), Gaps = 4/133 (3%)
Query: 24 KCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNF-SANVMVDGRTVNLGLWDTAGQED 82
K V + + AVGK+ L++ + F T+ F + V +D TV +WDTAGQE
Sbjct: 9 KLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQER 68
Query: 83 YNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPEL-RHYAPSVPIVLVGTKLDLRK 141
Y+ L P YRGA I+ + + + S+ K WV EL R +P++ I L G K DL
Sbjct: 69 YHSLAPXYYRGAQAAIVVYDITNEESFAR--AKNWVKELQRQASPNIVIALSGNKADLAN 126
Query: 142 DRQFHLDYPGAYT 154
R +Y
Sbjct: 127 KRAVDFQEAQSYA 139
>pdb|2EW1|A Chain A, Crystal Structure Of Rab30 In Complex With A Gtp Analogue
Length = 201
Score = 75.5 bits (184), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 43/125 (34%), Positives = 66/125 (52%), Gaps = 4/125 (3%)
Query: 22 FIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFS-ANVMVDGRTVNLGLWDTAGQ 80
K V + + VGKTCL+ +T FP T+ +F V ++G V L +WDTAGQ
Sbjct: 26 LFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQ 85
Query: 81 EDYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPS-VPIVLVGTKLDL 139
E + + YR A+ IL + + S+ + +W+ E+ YA + V VLVG K+DL
Sbjct: 86 ERFRSITQSYYRSANALILTYDITCEESFRCLP--EWLREIEQYASNKVITVLVGNKIDL 143
Query: 140 RKDRQ 144
+ R+
Sbjct: 144 AERRE 148
>pdb|3TW8|B Chain B, Gef Domain Of Dennd 1b In Complex With Rab Gtpase Rab35
pdb|3TW8|D Chain D, Gef Domain Of Dennd 1b In Complex With Rab Gtpase Rab35
Length = 181
Score = 75.5 bits (184), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 40/118 (33%), Positives = 62/118 (52%), Gaps = 3/118 (2%)
Query: 22 FIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSA-NVMVDGRTVNLGLWDTAGQ 80
K + + D VGK+ LL+ + NTF Y+ T+ +F V ++G V L +WDTAGQ
Sbjct: 9 LFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQ 68
Query: 81 EDYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLD 138
E + + YRG I+ + + S S+ N+ K+W+ E+ V +LVG K D
Sbjct: 69 ERFRTITSTYYRGTHGVIVVYDVTSAESFVNV--KRWLHEINQNCDDVCRILVGNKND 124
>pdb|1Z0A|A Chain A, Gdp-Bound Rab2a Gtpase
pdb|1Z0A|B Chain B, Gdp-Bound Rab2a Gtpase
pdb|1Z0A|C Chain C, Gdp-Bound Rab2a Gtpase
pdb|1Z0A|D Chain D, Gdp-Bound Rab2a Gtpase
Length = 174
Score = 75.5 bits (184), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 40/134 (29%), Positives = 73/134 (54%), Gaps = 4/134 (2%)
Query: 22 FIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVM-VDGRTVNLGLWDTAGQ 80
K + + D VGK+CLL+ +T F + T+ F A ++ +DG+ + L +WDTAGQ
Sbjct: 10 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQ 69
Query: 81 EDYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPS-VPIVLVGTKLDL 139
E + + YRGA +L + + R ++ +++ W+ + R ++ S + I+L+G K DL
Sbjct: 70 ESFRSITRSYYRGAAGALLVYDITRRDTFNHLT--TWLEDARQHSNSNMVIMLIGNKSDL 127
Query: 140 RKDRQFHLDYPGAY 153
R+ + A+
Sbjct: 128 ESRREVKKEEGEAF 141
>pdb|2O52|A Chain A, Crystal Structure Of Human Rab4b In Complex With Gdp
pdb|2O52|B Chain B, Crystal Structure Of Human Rab4b In Complex With Gdp
Length = 200
Score = 75.5 bits (184), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 42/125 (33%), Positives = 68/125 (54%), Gaps = 4/125 (3%)
Query: 22 FIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVM-VDGRTVNLGLWDTAGQ 80
K + + GK+CLL + N F D T+ F + V+ V G+TV L +WDTAGQ
Sbjct: 25 LFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQ 84
Query: 81 EDYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYA-PSVPIVLVGTKLDL 139
E + + YRGA +L + + SR +Y +++ W+ + R A P++ ++L G K DL
Sbjct: 85 ERFRSVTRSYYRGAAGALLVYDITSRETYNSLA--AWLTDARTLASPNIVVILCGNKKDL 142
Query: 140 RKDRQ 144
+R+
Sbjct: 143 DPERE 147
>pdb|2A5J|A Chain A, Crystal Structure Of Human Rab2b
Length = 191
Score = 75.5 bits (184), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 41/135 (30%), Positives = 71/135 (52%), Gaps = 4/135 (2%)
Query: 22 FIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSAN-VMVDGRTVNLGLWDTAGQ 80
K + + D VGK+CLL+ +T F + T+ F A V +DG+ + L +WDTAGQ
Sbjct: 21 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQ 80
Query: 81 EDYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELR-HYAPSVPIVLVGTKLDL 139
E + + YRGA +L + + R ++ +++ W+ + R H + ++ I+L+G K DL
Sbjct: 81 ESFRSITRSYYRGAAGALLVYDITRRETFNHLT--SWLEDARQHSSSNMVIMLIGNKSDL 138
Query: 140 RKDRQFHLDYPGAYT 154
R + A+
Sbjct: 139 ESRRDVKREEGEAFA 153
>pdb|1N6P|A Chain A, Crystal Structure Of Human Rab5a A30e Mutant Complex With
Gppnhp
Length = 170
Score = 75.1 bits (183), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 44/133 (33%), Positives = 65/133 (48%), Gaps = 4/133 (3%)
Query: 24 KCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNF-SANVMVDGRTVNLGLWDTAGQED 82
K V + + VGK+ L++ + F T+ F + V +D TV +WDTAGQE
Sbjct: 8 KLVLLGESEVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQER 67
Query: 83 YNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPEL-RHYAPSVPIVLVGTKLDLRK 141
Y+ L P+ YRGA I+ + + + S+ K WV EL R +P++ I L G K DL
Sbjct: 68 YHSLAPMYYRGAQAAIVVYDITNEESFAR--AKNWVKELQRQASPNIVIALSGNKADLAN 125
Query: 142 DRQFHLDYPGAYT 154
R +Y
Sbjct: 126 KRAVDFQEAQSYA 138
>pdb|1N6O|A Chain A, Crystal Structure Of Human Rab5a A30k Mutant Complex With
Gppnhp
Length = 170
Score = 75.1 bits (183), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 44/133 (33%), Positives = 65/133 (48%), Gaps = 4/133 (3%)
Query: 24 KCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNF-SANVMVDGRTVNLGLWDTAGQED 82
K V + + VGK+ L++ + F T+ F + V +D TV +WDTAGQE
Sbjct: 8 KLVLLGESKVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQER 67
Query: 83 YNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPEL-RHYAPSVPIVLVGTKLDLRK 141
Y+ L P+ YRGA I+ + + + S+ K WV EL R +P++ I L G K DL
Sbjct: 68 YHSLAPMYYRGAQAAIVVYDITNEESFAR--AKNWVKELQRQASPNIVIALSGNKADLAN 125
Query: 142 DRQFHLDYPGAYT 154
R +Y
Sbjct: 126 KRAVDFQEAQSYA 138
>pdb|1N6R|A Chain A, Crystal Structure Of Human Rab5a A30l Mutant Complex With
Gppnhp
Length = 170
Score = 74.7 bits (182), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 44/133 (33%), Positives = 65/133 (48%), Gaps = 4/133 (3%)
Query: 24 KCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNF-SANVMVDGRTVNLGLWDTAGQED 82
K V + + VGK+ L++ + F T+ F + V +D TV +WDTAGQE
Sbjct: 8 KLVLLGESLVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQER 67
Query: 83 YNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPEL-RHYAPSVPIVLVGTKLDLRK 141
Y+ L P+ YRGA I+ + + + S+ K WV EL R +P++ I L G K DL
Sbjct: 68 YHSLAPMYYRGAQAAIVVYDITNEESFAR--AKNWVKELQRQASPNIVIALSGNKADLAN 125
Query: 142 DRQFHLDYPGAYT 154
R +Y
Sbjct: 126 KRAVDFQEAQSYA 138
>pdb|1N6N|A Chain A, Crystal Structure Of Human Rab5a A30r Mutant Complex With
Gppnhp
Length = 170
Score = 74.7 bits (182), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 44/133 (33%), Positives = 65/133 (48%), Gaps = 4/133 (3%)
Query: 24 KCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNF-SANVMVDGRTVNLGLWDTAGQED 82
K V + + VGK+ L++ + F T+ F + V +D TV +WDTAGQE
Sbjct: 8 KLVLLGESRVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQER 67
Query: 83 YNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPEL-RHYAPSVPIVLVGTKLDLRK 141
Y+ L P+ YRGA I+ + + + S+ K WV EL R +P++ I L G K DL
Sbjct: 68 YHSLAPMYYRGAQAAIVVYDITNEESFAR--AKNWVKELQRQASPNIVIALSGNKADLAN 125
Query: 142 DRQFHLDYPGAYT 154
R +Y
Sbjct: 126 KRAVDFQEAQSYA 138
>pdb|1N6I|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With
Gdp
pdb|1N6K|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With
Gdp And Aluminum Fluoride
pdb|1N6L|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With
Gtp
Length = 170
Score = 74.7 bits (182), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 44/133 (33%), Positives = 65/133 (48%), Gaps = 4/133 (3%)
Query: 24 KCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNF-SANVMVDGRTVNLGLWDTAGQED 82
K V + + VGK+ L++ + F T+ F + V +D TV +WDTAGQE
Sbjct: 8 KLVLLGESPVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQER 67
Query: 83 YNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPEL-RHYAPSVPIVLVGTKLDLRK 141
Y+ L P+ YRGA I+ + + + S+ K WV EL R +P++ I L G K DL
Sbjct: 68 YHSLAPMYYRGAQAAIVVYDITNEESFAR--AKNWVKELQRQASPNIVIALSGNKADLAN 125
Query: 142 DRQFHLDYPGAYT 154
R +Y
Sbjct: 126 KRAVDFQEAQSYA 138
>pdb|1Z0D|A Chain A, Gdp-bound Rab5c Gtpase
pdb|1Z0D|C Chain C, Gdp-bound Rab5c Gtpase
Length = 167
Score = 74.7 bits (182), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 44/133 (33%), Positives = 65/133 (48%), Gaps = 4/133 (3%)
Query: 24 KCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNF-SANVMVDGRTVNLGLWDTAGQED 82
K V + + AVGK+ L++ + F T+ F + V +D TV +WDTAG E
Sbjct: 7 KLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGLER 66
Query: 83 YNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPEL-RHYAPSVPIVLVGTKLDLRK 141
Y+ L P+ YRGA I+ + + + ++ K WV EL R +P++ I L G K DL
Sbjct: 67 YHSLAPMYYRGAQAAIVVYDITNTDTFAR--AKNWVKELQRQASPNIVIALAGNKADLAS 124
Query: 142 DRQFHLDYPGAYT 154
R AY
Sbjct: 125 KRAVEFQEAQAYA 137
>pdb|1ZC3|A Chain A, Crystal Structure Of The Ral-Binding Domain Of Exo84 In
Complex With The Active Rala
pdb|1ZC3|C Chain C, Crystal Structure Of The Ral-Binding Domain Of Exo84 In
Complex With The Active Rala
pdb|1ZC4|A Chain A, Crystal Structure Of The Ral-binding Domain Of Exo84 In
Complex With The Active Rala
pdb|1ZC4|C Chain C, Crystal Structure Of The Ral-binding Domain Of Exo84 In
Complex With The Active Rala
Length = 175
Score = 74.3 bits (181), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 40/126 (31%), Positives = 67/126 (53%), Gaps = 2/126 (1%)
Query: 24 KCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDY 83
K + V G VGK+ L + + + F DY PT D++ V++DG V + + DTAG EDY
Sbjct: 8 KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGLEDY 67
Query: 84 NRLRPLSYRGADVFILAFSLISRPSYENISK-KKWVPELRHYAPSVPIVLVGTKLDLRKD 142
+R +R + F+ FS+ S+ + ++ + ++ +VP +LVG K DL
Sbjct: 68 AAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKE-DENVPFLLVGNKSDLEDK 126
Query: 143 RQFHLD 148
RQ ++
Sbjct: 127 RQVSVE 132
>pdb|2EFC|B Chain B, Ara7-GdpATVPS9A
pdb|2EFC|D Chain D, Ara7-GdpATVPS9A
pdb|2EFD|B Chain B, Ara7ATVPS9A
pdb|2EFD|D Chain D, Ara7ATVPS9A
pdb|2EFE|B Chain B, Ara7-Gdpnh2ATVPS9A
pdb|2EFE|D Chain D, Ara7-Gdpnh2ATVPS9A
pdb|2EFH|B Chain B, Ara7-GdpATVPS9A(D185N)
pdb|2EFH|D Chain D, Ara7-GdpATVPS9A(D185N)
pdb|4G01|B Chain B, Ara7-gdp-ca2+/vps9a
Length = 181
Score = 74.3 bits (181), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 44/123 (35%), Positives = 66/123 (53%), Gaps = 4/123 (3%)
Query: 24 KCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNF-SANVMVDGRTVNLGLWDTAGQED 82
K V + D GK+ L++ + + F T+ F S + V+ TV +WDTAGQE
Sbjct: 14 KLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 73
Query: 83 YNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYA-PSVPIVLVGTKLDLRK 141
Y+ L P+ YRGA I+ F + ++ S+E KKWV EL+ P++ + L G K DL
Sbjct: 74 YHSLAPMYYRGAAAAIIVFDVTNQASFER--AKKWVQELQAQGNPNMVMALAGNKSDLLD 131
Query: 142 DRQ 144
R+
Sbjct: 132 ARK 134
>pdb|2HUP|A Chain A, Crystal Structure Of Human Rab43 In Complex With Gdp
pdb|2HUP|B Chain B, Crystal Structure Of Human Rab43 In Complex With Gdp
Length = 201
Score = 74.3 bits (181), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 43/128 (33%), Positives = 69/128 (53%), Gaps = 4/128 (3%)
Query: 22 FIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVM-VDGRTVNLGLWDTAGQ 80
K V V D +VGKTC++ + F T+ +F+ + + G+ V L +WDTAGQ
Sbjct: 29 LFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQ 88
Query: 81 EDYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPS-VPIVLVGTKLDL 139
E + + YR A+ ILA+ + R S+ +S W+ ++R YA S + +L+G K DL
Sbjct: 89 ERFRTITQSYYRSANGAILAYDITKRSSF--LSVPHWIEDVRKYAGSNIVQLLIGNKSDL 146
Query: 140 RKDRQFHL 147
+ R+ L
Sbjct: 147 SELREVSL 154
>pdb|1VG1|A Chain A, Gdp-bound Rab7
pdb|1VG9|B Chain B, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|D Chain D, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|F Chain F, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|H Chain H, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
Length = 185
Score = 74.3 bits (181), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 47/141 (33%), Positives = 72/141 (51%), Gaps = 9/141 (6%)
Query: 22 FIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNF-SANVMVDGRTVNLGLWDTAGQ 80
+K + + D VGKT L+ Y F Y T+ +F + VMVD R V + +WDTAGQ
Sbjct: 8 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQ 67
Query: 81 EDYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPE-LRHYAP----SVPIVLVGT 135
E + L YRGAD +L F + + +++ + W E L +P + P V++G
Sbjct: 68 ERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLD--SWRDEFLIQASPRDPENFPFVVLGN 125
Query: 136 KLDLRKDRQFHLDYPGAYTIS 156
K+DL ++RQ A+ S
Sbjct: 126 KIDL-ENRQVATKRAQAWCYS 145
>pdb|1KY2|A Chain A, Gppnhp-Bound Ypt7p At 1.6 A Resolution
pdb|1KY3|A Chain A, Gdp-Bound Ypt7p At 1.35 A Resolution
Length = 182
Score = 73.9 bits (180), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 42/131 (32%), Positives = 68/131 (51%), Gaps = 9/131 (6%)
Query: 22 FIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNF-SANVMVDG-RTVNLGLWDTAG 79
+K + + D VGKT L+ Y + + Y T+ +F + V VDG + + +WDTAG
Sbjct: 8 ILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAG 67
Query: 80 QEDYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYA-----PSVPIVLVG 134
QE + L YRGAD +L + + + S+ENI K W E +A + P V++G
Sbjct: 68 QERFQSLGVAFYRGADCCVLVYDVTNASSFENI--KSWRDEFLVHANVNSPETFPFVILG 125
Query: 135 TKLDLRKDRQF 145
K+D + ++
Sbjct: 126 NKIDAEESKKI 136
>pdb|1VG0|B Chain B, The Crystal Structures Of The Rep-1 Protein In Complex
With Monoprenylated Rab7 Protein
pdb|1VG8|A Chain A, Gppnhp-Bound Rab7
pdb|1VG8|B Chain B, Gppnhp-Bound Rab7
pdb|1VG8|C Chain C, Gppnhp-Bound Rab7
pdb|1VG8|D Chain D, Gppnhp-Bound Rab7
Length = 207
Score = 73.9 bits (180), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 47/141 (33%), Positives = 72/141 (51%), Gaps = 9/141 (6%)
Query: 22 FIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNF-SANVMVDGRTVNLGLWDTAGQ 80
+K + + D VGKT L+ Y F Y T+ +F + VMVD R V + +WDTAGQ
Sbjct: 8 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQ 67
Query: 81 EDYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPE-LRHYAP----SVPIVLVGT 135
E + L YRGAD +L F + + +++ + W E L +P + P V++G
Sbjct: 68 ERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLD--SWRDEFLIQASPRDPENFPFVVLGN 125
Query: 136 KLDLRKDRQFHLDYPGAYTIS 156
K+DL ++RQ A+ S
Sbjct: 126 KIDL-ENRQVATKRAQAWCYS 145
>pdb|3MJH|A Chain A, Crystal Structure Of Human Rab5a In Complex With The C2h2
Zinc Finger Of Eea1
pdb|3MJH|C Chain C, Crystal Structure Of Human Rab5a In Complex With The C2h2
Zinc Finger Of Eea1
Length = 168
Score = 73.9 bits (180), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 44/133 (33%), Positives = 65/133 (48%), Gaps = 4/133 (3%)
Query: 24 KCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNF-SANVMVDGRTVNLGLWDTAGQED 82
K V + + AVGK+ L++ + F T+ F + V +D TV +WDTAG E
Sbjct: 7 KLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGLER 66
Query: 83 YNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPEL-RHYAPSVPIVLVGTKLDLRK 141
Y+ L P+ YRGA I+ + + + S+ K WV EL R +P++ I L G K DL
Sbjct: 67 YHSLAPMYYRGAQAAIVVYDITNEESFAR--AKNWVKELQRQASPNIVIALSGNKADLAN 124
Query: 142 DRQFHLDYPGAYT 154
R +Y
Sbjct: 125 KRAVDFQEAQSYA 137
>pdb|1X3S|A Chain A, Crystal Structure Of Human Rab18 In Complex With Gppnhp
Length = 195
Score = 73.9 bits (180), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 43/125 (34%), Positives = 68/125 (54%), Gaps = 6/125 (4%)
Query: 23 IKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSAN-VMVDGRTVNLGLWDTAGQE 81
+K + + + VGK+ LL+ +T +TF + T+ +F + VDG L +WDTAGQE
Sbjct: 16 LKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQE 75
Query: 82 DYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIV--LVGTKLDL 139
+ L P YRGA IL + + R ++ + W+ EL Y IV LVG K+D
Sbjct: 76 RFRTLTPSYYRGAQGVILVYDVTRRDTF--VKLDNWLNELETYCTRNDIVNXLVGNKID- 132
Query: 140 RKDRQ 144
+++R+
Sbjct: 133 KENRE 137
>pdb|3BFK|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|B Chain B, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|C Chain C, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|D Chain D, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|E Chain E, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
Length = 181
Score = 73.6 bits (179), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 44/125 (35%), Positives = 67/125 (53%), Gaps = 5/125 (4%)
Query: 22 FIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANV--MVDGRTVNLGLWDTAG 79
K V + D VGK+ LL +T + F + T+ F+ + + + + +WDTAG
Sbjct: 7 LFKIVLIGDSGVGKSNLLSRFTRDEFNLESKSTIGVEFATKSIQLKNNKIIKAQIWDTAG 66
Query: 80 QEDYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPS-VPIVLVGTKLD 138
QE Y + YRGA +L + + + S+ENI +KW+ ELR A S + I+LVG K D
Sbjct: 67 QERYRAITSAYYRGAVGALLVYDITKKNSFENI--EKWLKELRDNADSNIVILLVGNKSD 124
Query: 139 LRKDR 143
L+ R
Sbjct: 125 LKHLR 129
>pdb|1Z0F|A Chain A, Gdp-Bound Rab14 Gtpase
Length = 179
Score = 73.6 bits (179), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 40/122 (32%), Positives = 65/122 (53%), Gaps = 4/122 (3%)
Query: 24 KCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVM-VDGRTVNLGLWDTAGQED 82
K + + D VGK+CLL +T F D T+ F ++ V G+ + L +WDTAGQE
Sbjct: 17 KYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQER 76
Query: 83 YNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYA-PSVPIVLVGTKLDLRK 141
+ + YRGA ++ + + R +Y ++S W+ + R+ P+ I+L+G K DL
Sbjct: 77 FRAVTRSYYRGAAGALMVYDITRRSTYNHLS--SWLTDARNLTNPNTVIILIGNKADLEA 134
Query: 142 DR 143
R
Sbjct: 135 QR 136
>pdb|1WQ1|R Chain R, Ras-Rasgap Complex
pdb|1BKD|R Chain R, Complex Of Human H-Ras With Human Sos-1
pdb|1CTQ|A Chain A, Structure Of P21ras In Complex With Gppnhp At 100 K
pdb|1QRA|A Chain A, Structure Of P21ras In Complex With Gtp At 100 K
pdb|1K8R|A Chain A, Crystal Structure Of Ras-Bry2rbd Complex
pdb|1NVV|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1NVW|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1NVW|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1P2S|A Chain A, H-Ras 166 In 50% 2,2,2 Triflouroethanol
pdb|1P2T|A Chain A, H-Ras 166 In Aqueous Mother Liqour, Rt
pdb|1P2U|A Chain A, H-Ras In 50% Isopropanol
pdb|1P2V|A Chain A, H-Ras 166 In 60 % 1,6 Hexanediol
pdb|1XD2|B Chain B, Crystal Structure Of A Ternary Ras:sos:ras*gdp Complex
pdb|121P|A Chain A, Struktur Und Guanosintriphosphat-Hydrolysemechanismus Des
C- Terminal Verkuerzten Menschlichen Krebsproteins
P21-H-Ras
pdb|1CRP|A Chain A, The Solution Structure And Dynamics Of Ras P21. Gdp
Determined By Heteronuclear Three And Four Dimensional
Nmr Spectroscopy
pdb|1CRQ|A Chain A, The Solution Structure And Dynamics Of Ras P21. Gdp
Determined By Heteronuclear Three And Four Dimensional
Nmr Spectroscopy
pdb|1CRR|A Chain A, The Solution Structure And Dynamics Of Ras P21. Gdp
Determined By Heteronuclear Three And Four Dimensional
Nmr Spectroscopy
pdb|1GNP|A Chain A, X-Ray Crystal Structure Analysis Of The Catalytic Domain
Of The Oncogene Product P21h-Ras Complexed With Caged
Gtp And Mant Dgppnhp
pdb|1GNQ|A Chain A, X-Ray Crystal Structure Analysis Of The Catalytic Domain
Of The Oncogene Product P21h-Ras Complexed With Caged
Gtp And Mant Dgppnhp
pdb|1GNR|A Chain A, X-Ray Crystal Structure Analysis Of The Catalytic Domain
Of The Oncogene Product P21h-Ras Complexed With Caged
Gtp And Mant Dgppnhp
pdb|5P21|A Chain A, Refined Crystal Structure Of The Triphosphate Conformation
Of H-Ras P21 At 1.35 Angstroms Resolution: Implications
For The Mechanism Of Gtp Hydrolysis
pdb|2RGE|A Chain A, Crystal Structure Of H-Ras-Gppnhp
pdb|3K8Y|A Chain A, Allosteric Modulation Of H-Ras Gtpase
pdb|3LBH|A Chain A, Ras Soaked In Calcium Acetate
pdb|3LBI|A Chain A, Ras Soaked In Magnesium Acetate And Back Soaked In Calcium
A
pdb|3LBN|A Chain A, Ras Soaked In Magnesium Acetate
pdb|3KUD|A Chain A, Complex Of Ras-Gdp With Rafrbd(A85k)
pdb|3L8Y|A Chain A, Complex Of Ras With Cyclen
pdb|3L8Z|A Chain A, H-Ras Wildtype New Crystal Form
pdb|3RRY|A Chain A, H-Ras Crosslinked Control, Soaked In Aqueous Solution: One
Of 10 In Mscs Set
pdb|3RRZ|A Chain A, H-Ras In 70% Glycerol: One Of 10 In Mscs Set
pdb|3RS0|A Chain A, H-Ras Soaked In Neat Cyclopentanol: One Of 10 In Mscs Set
pdb|3RS2|A Chain A, H-Ras Soaked In 50% 2,2,2-Trifluoroethanol: One Of 10 In
Mscs Set
pdb|3RS3|A Chain A, H-Ras Soaked In Neat Hexane: 1 Of 10 In Mscs Set
pdb|3RS4|A Chain A, H-Ras Soaked In 60% 1,6-Hexanediol: 1 Of 10 In Mscs Set
pdb|3RS5|A Chain A, H-Ras Soaked In 55% Dimethylformamide: 1 Of 10 In Mscs Set
pdb|3RS7|A Chain A, H-Ras Soaked In 50% Isopropanol: 1 Of 10 In Mscs Set
pdb|3RSL|A Chain A, H-Ras Soaked In 90% R,S,R-Bisfuranol: One Of 10 In Mscs
Set
pdb|3RSO|A Chain A, H-Ras Soaked In 20% S,R,S-Bisfuranol: 1 Of 10 In Mscs Set
pdb|3TGP|A Chain A, Room Temperature H-Ras
pdb|4DLS|A Chain A, H-Ras Set 1 Cacl2 'mixed'
pdb|4DLT|A Chain A, H-Ras Set 2 Ca(Oac)2, On
pdb|4DLU|A Chain A, H-Ras Set 1 Ca(Oac)2, On
pdb|4DLW|A Chain A, H-Ras Set 2 Ca(Oac)2DTT, ON
Length = 166
Score = 73.2 bits (178), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 37/105 (35%), Positives = 60/105 (57%)
Query: 35 KTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGA 94
K+ L I N F +Y PT+ D++ V++DG T L + DTAGQE+Y+ +R R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 75
Query: 95 DVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDL 139
+ F+ F++ + S+E+I + + + + VP+VLVG K DL
Sbjct: 76 EGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL 120
>pdb|1RVD|A Chain A, H-Ras Complexed With Diaminobenzophenone-Beta,Gamma-Imido-
Gtp
pdb|1HE8|B Chain B, Ras G12v-Pi 3-Kinase Gamma Complex
pdb|2UZI|R Chain R, Crystal Structure Of Hras(G12v) - Anti-Ras Fv Complex
pdb|2VH5|R Chain R, Crystal Structure Of Hras(G12v) - Anti-Ras Fv (Disulfide
Free Mutant) Complex
pdb|3OIV|A Chain A, H-Rasg12v With Allosteric Switch In The "off" State
pdb|3OIW|A Chain A, H-Rasg12v With Allosteric Switch In The "on" State
Length = 166
Score = 73.2 bits (178), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 37/105 (35%), Positives = 60/105 (57%)
Query: 35 KTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGA 94
K+ L I N F +Y PT+ D++ V++DG T L + DTAGQE+Y+ +R R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 75
Query: 95 DVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDL 139
+ F+ F++ + S+E+I + + + + VP+VLVG K DL
Sbjct: 76 EGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL 120
>pdb|2X1V|A Chain A, Crystal Structure Of The Activating H-Ras I163f Mutant In
Costello Syndrome, Bound To Mg-Gdp
Length = 166
Score = 73.2 bits (178), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 37/105 (35%), Positives = 60/105 (57%)
Query: 35 KTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGA 94
K+ L I N F +Y PT+ D++ V++DG T L + DTAGQE+Y+ +R R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 75
Query: 95 DVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDL 139
+ F+ F++ + S+E+I + + + + VP+VLVG K DL
Sbjct: 76 EGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL 120
>pdb|6Q21|A Chain A, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|6Q21|B Chain B, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|6Q21|C Chain C, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|6Q21|D Chain D, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|1IOZ|A Chain A, Crystal Structure Of The C-Ha-Ras Protein Prepared By The
Cell-Free Synthesis
pdb|1AA9|A Chain A, Human C-Ha-Ras(1-171)(Dot)gdp, Nmr, Minimized Average
Structure
pdb|1Q21|A Chain A, Crystal Structures At 2.2 Angstroms Resolution Of The
Catalytic Domains Of Normal Ras Protein And An Oncogenic
Mutant Complexed With Gsp
Length = 171
Score = 73.2 bits (178), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 37/105 (35%), Positives = 60/105 (57%)
Query: 35 KTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGA 94
K+ L I N F +Y PT+ D++ V++DG T L + DTAGQE+Y+ +R R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 75
Query: 95 DVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDL 139
+ F+ F++ + S+E+I + + + + VP+VLVG K DL
Sbjct: 76 EGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL 120
>pdb|2Q21|A Chain A, Crystal Structures At 2.2 Angstroms Resolution Of The
Catalytic Domains Of Normal Ras Protein And An Oncogenic
Mutant Complexed With Gsp
Length = 171
Score = 73.2 bits (178), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 37/105 (35%), Positives = 60/105 (57%)
Query: 35 KTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGA 94
K+ L I N F +Y PT+ D++ V++DG T L + DTAGQE+Y+ +R R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 75
Query: 95 DVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDL 139
+ F+ F++ + S+E+I + + + + VP+VLVG K DL
Sbjct: 76 EGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL 120
>pdb|3CPH|A Chain A, Crystal Structure Of Sec4 In Complex With Rab-Gdi
Length = 213
Score = 73.2 bits (178), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 39/121 (32%), Positives = 65/121 (53%), Gaps = 4/121 (3%)
Query: 22 FIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFS-ANVMVDGRTVNLGLWDTAGQ 80
+K + + D VGK+CLL+ + + F ++ T+ +F V ++G+ V L LWDTAGQ
Sbjct: 20 IMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQ 79
Query: 81 EDYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYA-PSVPIVLVGTKLDL 139
E + + YRGA IL + + ++ NI K+W + +A ++LVG K D+
Sbjct: 80 ERFRTITTAYYRGAMGIILVYDVTDERTFTNI--KQWFKTVNEHANDEAQLLLVGNKSDM 137
Query: 140 R 140
Sbjct: 138 E 138
>pdb|3CPJ|B Chain B, Crystal Structure Of Ypt31 In Complex With Yeast Rab-Gdi
Length = 223
Score = 73.2 bits (178), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 42/120 (35%), Positives = 63/120 (52%), Gaps = 4/120 (3%)
Query: 22 FIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVM-VDGRTVNLGLWDTAGQ 80
K V + D VGK+ LL +T N F D T+ F+ + ++G+ + +WDTAGQ
Sbjct: 13 LFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQ 72
Query: 81 EDYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYA-PSVPIVLVGTKLDL 139
E Y + YRGA ++ + + SYEN + W+ ELR A +V + L+G K DL
Sbjct: 73 ERYRAITSAYYRGAVGALIVYDISKSSSYENCN--HWLSELRENADDNVAVGLIGNKSDL 130
>pdb|2C5L|A Chain A, Structure Of Plc Epsilon Ras Association Domain With Hras
pdb|2C5L|B Chain B, Structure Of Plc Epsilon Ras Association Domain With Hras
Length = 173
Score = 73.2 bits (178), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 37/105 (35%), Positives = 60/105 (57%)
Query: 35 KTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGA 94
K+ L I N F +Y PT+ D++ V++DG T L + DTAGQE+Y+ +R R
Sbjct: 23 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 82
Query: 95 DVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDL 139
+ F+ F++ + S+E+I + + + + VP+VLVG K DL
Sbjct: 83 EGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL 127
>pdb|4EFM|A Chain A, Crystal Structure Of H-Ras G12v In Complex With Gppnhp
(State 1)
Length = 171
Score = 72.8 bits (177), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 37/105 (35%), Positives = 60/105 (57%)
Query: 35 KTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGA 94
K+ L I N F +Y PT+ D++ V++DG T L + DTAGQE+Y+ +R R
Sbjct: 21 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 80
Query: 95 DVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDL 139
+ F+ F++ + S+E+I + + + + VP+VLVG K DL
Sbjct: 81 EGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL 125
>pdb|4EFL|A Chain A, Crystal Structure Of H-Ras Wt In Complex With Gppnhp
(State 1)
Length = 171
Score = 72.8 bits (177), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 37/105 (35%), Positives = 60/105 (57%)
Query: 35 KTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGA 94
K+ L I N F +Y PT+ D++ V++DG T L + DTAGQE+Y+ +R R
Sbjct: 21 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 80
Query: 95 DVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDL 139
+ F+ F++ + S+E+I + + + + VP+VLVG K DL
Sbjct: 81 EGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL 125
>pdb|3V4F|A Chain A, H-Ras Peg 400CACL2, ORDERED OFF
pdb|4DLR|A Chain A, H-Ras Peg 400CA(OAC)2, ORDERED OFF
pdb|4DLV|A Chain A, H-Ras Set 2 Cacl2DTT, ORDERED OFF
pdb|4DLX|A Chain A, H-Ras Set 1 Cacl2DTE, ORDERED OFF
pdb|4DLY|A Chain A, Set 1 Cacl2DTT, ORDERED OFF
pdb|4DLZ|A Chain A, H-Ras Set 2 Ca(Oac)2DTE, ORDERED OFF
Length = 166
Score = 72.8 bits (177), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 37/105 (35%), Positives = 60/105 (57%)
Query: 35 KTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGA 94
K+ L I N F +Y PT+ D++ V++DG T L + DTAGQE+Y+ +R R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDEYMRTG 75
Query: 95 DVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDL 139
+ F+ F++ + S+E+I + + + + VP+VLVG K DL
Sbjct: 76 EGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL 120
>pdb|1EK0|A Chain A, Gppnhp-Bound Ypt51 At 1.48 A Resolution
Length = 170
Score = 72.8 bits (177), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 40/118 (33%), Positives = 62/118 (52%), Gaps = 4/118 (3%)
Query: 23 IKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNF-SANVMVDGRTVNLGLWDTAGQE 81
IK V + + AVGK+ +++ + N F + PT+ F + V ++ TV +WDTAGQE
Sbjct: 4 IKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQE 63
Query: 82 DYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPS-VPIVLVGTKLD 138
+ L P YR A ++ + + S+ I + WV EL A + I LVG K+D
Sbjct: 64 RFASLAPXYYRNAQAALVVYDVTKPQSF--IKARHWVKELHEQASKDIIIALVGNKID 119
>pdb|2EQB|A Chain A, Crystal Structure Of The Rab Gtpase Sec4p, The Sec2p Gef
Domain, And Phosphate Complex
Length = 174
Score = 72.8 bits (177), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 39/120 (32%), Positives = 65/120 (54%), Gaps = 4/120 (3%)
Query: 23 IKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFS-ANVMVDGRTVNLGLWDTAGQE 81
+K + + D VGK+CLL+ + + F ++ T+ +F V ++G+ V L LWDTAGQE
Sbjct: 8 MKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQE 67
Query: 82 DYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYA-PSVPIVLVGTKLDLR 140
+ + YRGA IL + + ++ NI K+W + +A ++LVG K D+
Sbjct: 68 RFRTITTAYYRGAMGIILVYDVTDERTFTNI--KQWFKTVNEHANDEAQLLLVGNKSDME 125
>pdb|4Q21|A Chain A, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
Length = 189
Score = 72.8 bits (177), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 37/105 (35%), Positives = 60/105 (57%)
Query: 35 KTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGA 94
K+ L I N F +Y PT+ D++ V++DG T L + DTAGQE+Y+ +R R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 75
Query: 95 DVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDL 139
+ F+ F++ + S+E+I + + + + VP+VLVG K DL
Sbjct: 76 EGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL 120
>pdb|3DZ8|A Chain A, Crystal Structure Of Human Rab3b Gtpase Bound With Gdp
Length = 191
Score = 72.8 bits (177), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 40/123 (32%), Positives = 66/123 (53%), Gaps = 4/123 (3%)
Query: 23 IKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSAN-VMVDGRTVNLGLWDTAGQE 81
K + + + +VGKT L Y +TF +V TV +F V + V L +WDTAGQE
Sbjct: 24 FKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQE 83
Query: 82 DYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYA-PSVPIVLVGTKLDLR 140
Y + YRGA FIL + + + S+ + + W +++ Y+ + ++LVG K D+
Sbjct: 84 RYRTITTAYYRGAMGFILMYDITNEESFNAV--QDWATQIKTYSWDNAQVILVGNKCDME 141
Query: 141 KDR 143
++R
Sbjct: 142 EER 144
>pdb|3LO5|A Chain A, Crystal Structure Of The Dominant Negative S17n Mutant Of
Ras
pdb|3LO5|C Chain C, Crystal Structure Of The Dominant Negative S17n Mutant Of
Ras
pdb|3LO5|E Chain E, Crystal Structure Of The Dominant Negative S17n Mutant Of
Ras
Length = 166
Score = 72.4 bits (176), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 37/105 (35%), Positives = 59/105 (56%)
Query: 35 KTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGA 94
K L I N F +Y PT+ D++ V++DG T L + DTAGQE+Y+ +R R
Sbjct: 16 KNALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 75
Query: 95 DVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDL 139
+ F+ F++ + S+E+I + + + + VP+VLVG K DL
Sbjct: 76 EGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL 120
>pdb|3LAW|A Chain A, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|B Chain B, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|C Chain C, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|D Chain D, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|E Chain E, Structure Of Gtp-Bound L129f Mutant Rab7
Length = 207
Score = 72.4 bits (176), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 46/141 (32%), Positives = 71/141 (50%), Gaps = 9/141 (6%)
Query: 22 FIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNF-SANVMVDGRTVNLGLWDTAGQ 80
+K + + D VGKT L+ Y F Y T+ +F + VMVD R V + +WDTAGQ
Sbjct: 8 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQ 67
Query: 81 EDYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPE-LRHYAP----SVPIVLVGT 135
E + L YRGAD +L F + + +++ + W E L +P + P V++G
Sbjct: 68 ERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLD--SWRDEFLIQASPRDPENFPFVVLGN 125
Query: 136 KLDLRKDRQFHLDYPGAYTIS 156
K+D ++RQ A+ S
Sbjct: 126 KIDF-ENRQVATKRAQAWCYS 145
>pdb|1G17|A Chain A, Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)-
Imidotriphosphate
pdb|1G17|B Chain B, Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)-
Imidotriphosphate
Length = 170
Score = 72.4 bits (176), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 38/120 (31%), Positives = 65/120 (54%), Gaps = 4/120 (3%)
Query: 23 IKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFS-ANVMVDGRTVNLGLWDTAGQE 81
+K + + D VGK+CLL+ + + F ++ T+ +F V ++G+ V L +WDTAGQE
Sbjct: 4 MKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQE 63
Query: 82 DYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYA-PSVPIVLVGTKLDLR 140
+ + YRGA IL + + ++ NI K+W + +A ++LVG K D+
Sbjct: 64 RFRTITTAYYRGAMGIILVYDITDERTFTNI--KQWFKTVNEHANDEAQLLLVGNKSDME 121
>pdb|3DDC|A Chain A, Crystal Structure Of Nore1a In Complex With Ras
Length = 166
Score = 72.4 bits (176), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 37/105 (35%), Positives = 59/105 (56%)
Query: 35 KTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGA 94
K+ L I N F Y PT+ D++ V++DG T L + DTAGQE+Y+ +R R
Sbjct: 16 KSALTIQLIQNHFVEKYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 75
Query: 95 DVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDL 139
+ F+ F++ + S+E+I + + + + VP+VLVG K DL
Sbjct: 76 EGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL 120
>pdb|2CLD|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gdp (2)
Length = 166
Score = 72.4 bits (176), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 37/105 (35%), Positives = 60/105 (57%)
Query: 35 KTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGA 94
K+ L I N F +Y PT+ D++ V++DG T L + DTAGQE+Y+ +R R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 75
Query: 95 DVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDL 139
+ F+ F++ + S+E+I + + + + VP+VLVG K DL
Sbjct: 76 EGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDL 120
>pdb|2FE4|A Chain A, The Crystal Structure Of Human Neuronal Rab6b In Its
Inactive Gdp-Bound Form
pdb|2FFQ|A Chain A, The Crystal Structure Of Human Neuronal Rab6b In Its
Active Gtpgs-Bound Form
pdb|2E9S|A Chain A, Human Neuronal Rab6b In Three Intermediate Forms
pdb|2E9S|B Chain B, Human Neuronal Rab6b In Three Intermediate Forms
pdb|2E9S|C Chain C, Human Neuronal Rab6b In Three Intermediate Forms
Length = 171
Score = 72.4 bits (176), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 43/127 (33%), Positives = 69/127 (54%), Gaps = 4/127 (3%)
Query: 24 KCVTVRDGAVGKTCLLISYTGNTFPTDYVPTV-FDNFSANVMVDGRTVNLGLWDTAGQED 82
K V + + +VGKT L+ + ++F Y T+ D S + ++ RTV L LWDTAGQE
Sbjct: 4 KLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 63
Query: 83 YNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELR-HYAPSVPIVLVGTKLDLRK 141
+ L P R + V ++ + + + S++ S KW+ ++R V I+LVG K DL
Sbjct: 64 FRSLIPSYIRDSTVAVVVYDITNLNSFQQTS--KWIDDVRTERGSDVIIMLVGNKTDLAD 121
Query: 142 DRQFHLD 148
RQ ++
Sbjct: 122 KRQITIE 128
>pdb|2OCY|C Chain C, Complex Of The Guanine Exchange Factor Sec2p And The Rab
Gtpase Sec4p
Length = 170
Score = 72.0 bits (175), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 39/117 (33%), Positives = 63/117 (53%), Gaps = 4/117 (3%)
Query: 24 KCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFS-ANVMVDGRTVNLGLWDTAGQED 82
K + + D VGK+CLL+ + + F ++ T+ +F V ++G+ V L LWDTAGQE
Sbjct: 5 KILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQER 64
Query: 83 YNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYA-PSVPIVLVGTKLD 138
+ + YRGA IL + + ++ NI K+W + +A ++LVG K D
Sbjct: 65 FRTITTAYYRGAXGIILVYDVTDERTFTNI--KQWFKTVNEHANDEAQLLLVGNKSD 119
>pdb|2QUZ|A Chain A, Crystal Structure Of The Activating H-Rask117r Mutant In
Costello Syndrome, Bound To Mg-Gdp
Length = 166
Score = 72.0 bits (175), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 36/105 (34%), Positives = 60/105 (57%)
Query: 35 KTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGA 94
K+ L I N F +Y PT+ D++ V++DG T L + DTAGQE+Y+ +R R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 75
Query: 95 DVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDL 139
+ F+ F++ + S+E+I + + + + VP+VLVG + DL
Sbjct: 76 EGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNRCDL 120
>pdb|1LFD|B Chain B, Crystal Structure Of The Active Ras Protein Complexed With
The Ras-interacting Domain Of Ralgds
pdb|1LFD|D Chain D, Crystal Structure Of The Active Ras Protein Complexed With
The Ras-interacting Domain Of Ralgds
Length = 167
Score = 72.0 bits (175), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 37/105 (35%), Positives = 59/105 (56%)
Query: 35 KTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGA 94
K+ L I N F Y PT+ D++ V++DG T L + DTAGQE+Y+ +R R
Sbjct: 16 KSALTIQLIQNHFVDKYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 75
Query: 95 DVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDL 139
+ F+ F++ + S+E+I + + + + VP+VLVG K DL
Sbjct: 76 EGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL 120
>pdb|1IAQ|A Chain A, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser
(T35s) Complexed With Guanosine-5'-[b,G-Imido]
Triphosphate
pdb|1IAQ|B Chain B, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser
(T35s) Complexed With Guanosine-5'-[b,G-Imido]
Triphosphate
pdb|1IAQ|C Chain C, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser
(T35s) Complexed With Guanosine-5'-[b,G-Imido]
Triphosphate
Length = 166
Score = 72.0 bits (175), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 36/105 (34%), Positives = 60/105 (57%)
Query: 35 KTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGA 94
K+ L I N F +Y P++ D++ V++DG T L + DTAGQE+Y+ +R R
Sbjct: 16 KSALTIQLIQNHFVDEYDPSIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 75
Query: 95 DVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDL 139
+ F+ F++ + S+E+I + + + + VP+VLVG K DL
Sbjct: 76 EGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL 120
>pdb|3K9N|A Chain A, Allosteric Modulation Of H-Ras Gtpase
pdb|3K9L|A Chain A, Allosteric Modulation Of H-Ras Gtpase
pdb|3K9L|B Chain B, Allosteric Modulation Of H-Ras Gtpase
pdb|3K9L|C Chain C, Allosteric Modulation Of H-Ras Gtpase
Length = 166
Score = 71.6 bits (174), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 36/105 (34%), Positives = 60/105 (57%)
Query: 35 KTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGA 94
K+ L I N F ++ PT+ D++ V++DG T L + DTAGQE+Y+ +R R
Sbjct: 16 KSALTIQLIQNHFVDEFDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 75
Query: 95 DVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDL 139
+ F+ F++ + S+E+I + + + + VP+VLVG K DL
Sbjct: 76 EGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL 120
>pdb|3KKM|A Chain A, Crystal Structure Of H-Ras T35s In Complex With Gppnhp
pdb|3KKN|A Chain A, Crystal Structure Of H-Ras T35s In Complex With Gppnhp
pdb|2LCF|A Chain A, Solution Structure Of Gppnhp-Bound H-Rast35s Mutant
Protein
Length = 172
Score = 71.6 bits (174), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 36/105 (34%), Positives = 60/105 (57%)
Query: 35 KTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGA 94
K+ L I N F +Y P++ D++ V++DG T L + DTAGQE+Y+ +R R
Sbjct: 22 KSALTIQLIQNHFVDEYDPSIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 81
Query: 95 DVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDL 139
+ F+ F++ + S+E+I + + + + VP+VLVG K DL
Sbjct: 82 EGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL 126
>pdb|4EPX|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
pdb|4EPY|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
Length = 170
Score = 71.6 bits (174), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 37/105 (35%), Positives = 59/105 (56%)
Query: 35 KTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGA 94
K+ L I N F +Y PT+ D++ V++DG T L + DTAGQE+Y+ +R R
Sbjct: 17 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 76
Query: 95 DVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDL 139
+ F+ F++ + S+E+I + + + VP+VLVG K DL
Sbjct: 77 EGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKSDL 121
>pdb|4EPT|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
pdb|4EPV|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
pdb|4EPW|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
Length = 170
Score = 71.6 bits (174), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 37/105 (35%), Positives = 59/105 (56%)
Query: 35 KTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGA 94
K+ L I N F +Y PT+ D++ V++DG T L + DTAGQE+Y+ +R R
Sbjct: 17 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 76
Query: 95 DVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDL 139
+ F+ F++ + S+E+I + + + VP+VLVG K DL
Sbjct: 77 EGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKSDL 121
>pdb|1G16|A Chain A, Crystal Structure Of Sec4-Gdp
pdb|1G16|B Chain B, Crystal Structure Of Sec4-Gdp
pdb|1G16|C Chain C, Crystal Structure Of Sec4-Gdp
pdb|1G16|D Chain D, Crystal Structure Of Sec4-Gdp
Length = 170
Score = 71.6 bits (174), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 38/117 (32%), Positives = 63/117 (53%), Gaps = 4/117 (3%)
Query: 24 KCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFS-ANVMVDGRTVNLGLWDTAGQED 82
K + + D VGK+CLL+ + + F ++ T+ +F V ++G+ V L +WDTAGQE
Sbjct: 5 KILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQER 64
Query: 83 YNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYA-PSVPIVLVGTKLD 138
+ + YRGA IL + + ++ NI K+W + +A ++LVG K D
Sbjct: 65 FRTITTAYYRGAXGIILVYDITDERTFTNI--KQWFKTVNEHANDEAQLLLVGNKSD 119
>pdb|221P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 71.6 bits (174), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 36/105 (34%), Positives = 60/105 (57%)
Query: 35 KTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGA 94
K+ L I N F +Y PT+ +++ V++DG T L + DTAGQE+Y+ +R R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEESYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 75
Query: 95 DVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDL 139
+ F+ F++ + S+E+I + + + + VP+VLVG K DL
Sbjct: 76 EGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL 120
>pdb|1LF0|A Chain A, Crystal Structure Of Rasa59g In The Gtp-Bound Form
pdb|1LF5|A Chain A, Crystal Structure Of Rasa59g In The Gdp-Bound Form
pdb|1NVU|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
pdb|1NVU|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
pdb|1NVX|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
pdb|1NVX|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
Length = 166
Score = 71.6 bits (174), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 36/105 (34%), Positives = 59/105 (56%)
Query: 35 KTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGA 94
K+ L I N F +Y PT+ D++ V++DG T L + DT GQE+Y+ +R R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTGGQEEYSAMRDQYMRTG 75
Query: 95 DVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDL 139
+ F+ F++ + S+E+I + + + + VP+VLVG K DL
Sbjct: 76 EGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL 120
>pdb|2F7S|A Chain A, The Crystal Structure Of Human Rab27b Bound To Gdp
pdb|2F7S|B Chain B, The Crystal Structure Of Human Rab27b Bound To Gdp
Length = 217
Score = 71.2 bits (173), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 48/138 (34%), Positives = 70/138 (50%), Gaps = 15/138 (10%)
Query: 22 FIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMV---------DGRT--V 70
IK + + D VGKT L YT N F ++ TV +F +V G+ V
Sbjct: 25 LIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKV 84
Query: 71 NLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELR--HYAPSV 128
+L LWDTAGQE + L +R A F+L F L S+ S+ N+ + W+ +L+ Y +
Sbjct: 85 HLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNV--RNWMSQLQANAYCENP 142
Query: 129 PIVLVGTKLDLRKDRQFH 146
IVL+G K DL R+ +
Sbjct: 143 DIVLIGNKADLPDQREVN 160
>pdb|521P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 71.2 bits (173), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 36/105 (34%), Positives = 59/105 (56%)
Query: 35 KTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGA 94
K+ L I N F +Y PT+ D++ V++DG T L + DT GQE+Y+ +R R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTTGQEEYSAMRDQYMRTG 75
Query: 95 DVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDL 139
+ F+ F++ + S+E+I + + + + VP+VLVG K DL
Sbjct: 76 EGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL 120
>pdb|2RGB|A Chain A, Crystal Structure Of H-Rasq61k-Gppnhp
Length = 166
Score = 71.2 bits (173), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 36/105 (34%), Positives = 60/105 (57%)
Query: 35 KTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGA 94
K+ L I N F +Y PT+ D++ V++DG T L + DTAG+E+Y+ +R R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGKEEYSAMRDQYMRTG 75
Query: 95 DVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDL 139
+ F+ F++ + S+E+I + + + + VP+VLVG K DL
Sbjct: 76 EGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL 120
>pdb|621P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 71.2 bits (173), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 36/105 (34%), Positives = 59/105 (56%)
Query: 35 KTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGA 94
K+ L I N F +Y PT+ D++ V++DG T L + DTAG E+Y+ +R R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGHEEYSAMRDQYMRTG 75
Query: 95 DVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDL 139
+ F+ F++ + S+E+I + + + + VP+VLVG K DL
Sbjct: 76 EGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL 120
>pdb|3I3S|R Chain R, Crystal Structure Of H-Ras With Thr50 Replaced By
Isoleucine
Length = 166
Score = 71.2 bits (173), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 36/105 (34%), Positives = 59/105 (56%)
Query: 35 KTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGA 94
K+ L I N F +Y PT+ D++ V++DG L + DTAGQE+Y+ +R R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGEICLLDILDTAGQEEYSAMRDQYMRTG 75
Query: 95 DVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDL 139
+ F+ F++ + S+E+I + + + + VP+VLVG K DL
Sbjct: 76 EGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL 120
>pdb|3TSO|A Chain A, Structure Of The Cancer Associated Rab25 Protein In
Complex With Fip2
pdb|3TSO|B Chain B, Structure Of The Cancer Associated Rab25 Protein In
Complex With Fip2
Length = 178
Score = 71.2 bits (173), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 44/123 (35%), Positives = 63/123 (51%), Gaps = 4/123 (3%)
Query: 24 KCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSA-NVMVDGRTVNLGLWDTAGQED 82
K V + + VGKT LL +T N F D T+ FS VM+ V +WDTAG E
Sbjct: 12 KVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLER 71
Query: 83 YNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPEL-RHYAPSVPIVLVGTKLDLRK 141
Y + YRGA +L F L +Y + ++W+ EL H ++ ++LVG K DL +
Sbjct: 72 YRAITSAYYRGAVGALLVFDLTKHQTYAVV--ERWLKELYDHAEATIVVMLVGNKSDLSQ 129
Query: 142 DRQ 144
R+
Sbjct: 130 ARE 132
>pdb|2BMD|A Chain A, High Resolution Structure Of Gdp-Bound Human Rab4a
pdb|2BME|A Chain A, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|B Chain B, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|C Chain C, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|D Chain D, High Resolution Structure Of Gppnhp-Bound Human Rab4a
Length = 186
Score = 71.2 bits (173), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 40/125 (32%), Positives = 65/125 (52%), Gaps = 4/125 (3%)
Query: 22 FIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVM-VDGRTVNLGLWDTAGQ 80
K + + + GK+CLL + F D T+ F + ++ V G+ V L +WDTAGQ
Sbjct: 10 LFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQ 69
Query: 81 EDYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAP-SVPIVLVGTKLDL 139
E + + YRGA +L + + SR +Y ++ W+ + R A ++ I+L G K DL
Sbjct: 70 ERFRSVTRSYYRGAAGALLVYDITSRETYNALT--NWLTDARMLASQNIVIILCGNKKDL 127
Query: 140 RKDRQ 144
DR+
Sbjct: 128 DADRE 132
>pdb|2GIL|A Chain A, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
pdb|2GIL|B Chain B, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
pdb|2GIL|C Chain C, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
pdb|2GIL|D Chain D, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
Length = 162
Score = 70.9 bits (172), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 42/127 (33%), Positives = 69/127 (54%), Gaps = 4/127 (3%)
Query: 24 KCVTVRDGAVGKTCLLISYTGNTFPTDYVPTV-FDNFSANVMVDGRTVNLGLWDTAGQED 82
K V + + +VGKT L+ + ++F Y T+ D S + ++ RTV L LWDTAGQE
Sbjct: 3 KLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 62
Query: 83 YNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELR-HYAPSVPIVLVGTKLDLRK 141
+ L P R + V ++ + + + S++ + KW+ ++R V I+LVG K DL
Sbjct: 63 FRSLIPSYIRDSTVAVVVYDITNVNSFQQTT--KWIDDVRTERGSDVIIMLVGNKTDLAD 120
Query: 142 DRQFHLD 148
RQ ++
Sbjct: 121 KRQVSIE 127
>pdb|2P5S|A Chain A, Rab Domain Of Human Rasef In Complex With Gdp
pdb|2P5S|B Chain B, Rab Domain Of Human Rasef In Complex With Gdp
Length = 199
Score = 70.9 bits (172), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 44/122 (36%), Positives = 64/122 (52%), Gaps = 4/122 (3%)
Query: 21 KFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSAN-VMVDGRTVNLGLWDTAG 79
K K V D AVGK+ L+ N F + T+ +F ++VDG L LWDTAG
Sbjct: 27 KAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAG 86
Query: 80 QEDYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYA-PSVPIVLVGTKLD 138
QE + + +R AD +L + + S+ NI ++WV + A +VPI+LVG K D
Sbjct: 87 QERFRSIAKSYFRKADGVLLLYDVTCEKSFLNI--REWVDMIEDAAHETVPIMLVGNKAD 144
Query: 139 LR 140
+R
Sbjct: 145 IR 146
>pdb|1YU9|A Chain A, Gppnhp-Bound Rab4a
Length = 175
Score = 70.9 bits (172), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 40/125 (32%), Positives = 65/125 (52%), Gaps = 4/125 (3%)
Query: 22 FIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVM-VDGRTVNLGLWDTAGQ 80
K + + + GK+CLL + F D T+ F + ++ V G+ V L +WDTAGQ
Sbjct: 11 LFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQ 70
Query: 81 EDYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAP-SVPIVLVGTKLDL 139
E + + YRGA +L + + SR +Y ++ W+ + R A ++ I+L G K DL
Sbjct: 71 ERFRSVTRSYYRGAAGALLVYDITSRETYNALT--NWLTDARMLASQNIVIILCGNKKDL 128
Query: 140 RKDRQ 144
DR+
Sbjct: 129 DADRE 133
>pdb|1XCM|A Chain A, Crystal Structure Of The Gppnhp-Bound H-Ras G60a Mutant
Length = 167
Score = 70.9 bits (172), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 36/105 (34%), Positives = 59/105 (56%)
Query: 35 KTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGA 94
K+ L I N F +Y PT+ D++ V++DG T L + DTA QE+Y+ +R R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAAQEEYSAMRDQYMRTG 75
Query: 95 DVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDL 139
+ F+ F++ + S+E+I + + + + VP+VLVG K DL
Sbjct: 76 EGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKXDL 120
>pdb|1T91|A Chain A, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1T91|B Chain B, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1T91|C Chain C, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1T91|D Chain D, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1YHN|A Chain A, Structure Basis Of Rilp Recruitment By Rab7
Length = 207
Score = 70.9 bits (172), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 46/141 (32%), Positives = 71/141 (50%), Gaps = 9/141 (6%)
Query: 22 FIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNF-SANVMVDGRTVNLGLWDTAGQ 80
+K + + D VGKT L+ Y F Y T+ +F + VMVD R V + +WDTAG
Sbjct: 8 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGL 67
Query: 81 EDYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPE-LRHYAP----SVPIVLVGT 135
E + L YRGAD +L F + + +++ + W E L +P + P V++G
Sbjct: 68 ERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLD--SWRDEFLIQASPRDPENFPFVVLGN 125
Query: 136 KLDLRKDRQFHLDYPGAYTIS 156
K+DL ++RQ A+ S
Sbjct: 126 KIDL-ENRQVATKRAQAWCYS 145
>pdb|1XJ0|A Chain A, Crystal Structure Of The Gdp-Bound Form Of The Rasg60a
Mutant
Length = 166
Score = 70.9 bits (172), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 36/105 (34%), Positives = 59/105 (56%)
Query: 35 KTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGA 94
K+ L I N F +Y PT+ D++ V++DG T L + DTA QE+Y+ +R R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAAQEEYSAMRDQYMRTG 75
Query: 95 DVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDL 139
+ F+ F++ + S+E+I + + + + VP+VLVG K DL
Sbjct: 76 EGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKXDL 120
>pdb|4DRZ|A Chain A, Crystal Structure Of Human Rab14
Length = 196
Score = 70.9 bits (172), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 64/122 (52%), Gaps = 4/122 (3%)
Query: 24 KCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVM-VDGRTVNLGLWDTAGQED 82
K + + D VGK+CLL +T F D T+ F ++ V G+ + L +WDTAGQ
Sbjct: 32 KYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQGR 91
Query: 83 YNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYA-PSVPIVLVGTKLDLRK 141
+ + YRGA ++ + + R +Y ++S W+ + R+ P+ I+L+G K DL
Sbjct: 92 FRAVTRSYYRGAAGALMVYDITRRSTYNHLS--SWLTDARNLTNPNTVIILIGNKADLEA 149
Query: 142 DR 143
R
Sbjct: 150 QR 151
>pdb|2OIL|A Chain A, Crystal Structure Of Human Rab25 In Complex With Gdp
Length = 193
Score = 70.5 bits (171), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 44/123 (35%), Positives = 63/123 (51%), Gaps = 4/123 (3%)
Query: 24 KCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSA-NVMVDGRTVNLGLWDTAGQED 82
K V + + VGKT LL +T N F D T+ FS VM+ V +WDTAG E
Sbjct: 27 KVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLER 86
Query: 83 YNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPEL-RHYAPSVPIVLVGTKLDLRK 141
Y + YRGA +L F L +Y + ++W+ EL H ++ ++LVG K DL +
Sbjct: 87 YRAITSAYYRGAVGALLVFDLTKHQTYAVV--ERWLKELYDHAEATIVVMLVGNKSDLSQ 144
Query: 142 DRQ 144
R+
Sbjct: 145 ARE 147
>pdb|2Y8E|A Chain A, Crystal Structure Of D. Melanogaster Rab6 Gtpase Bound To
Gmppnp
pdb|2Y8E|B Chain B, Crystal Structure Of D. Melanogaster Rab6 Gtpase Bound To
Gmppnp
Length = 179
Score = 70.5 bits (171), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 43/123 (34%), Positives = 66/123 (53%), Gaps = 4/123 (3%)
Query: 24 KCVTVRDGAVGKTCLLISYTGNTFPTDYVPTV-FDNFSANVMVDGRTVNLGLWDTAGQED 82
K V + + +VGKT L+ + ++F Y T+ D S + ++ RTV L LWDTAGQE
Sbjct: 16 KLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 75
Query: 83 YNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELR-HYAPSVPIVLVGTKLDLRK 141
+ L P R + V ++ + + + S+ S KW+ ++R V I+LVG K DL
Sbjct: 76 FRSLIPSYIRDSTVAVVVYDITNTNSFHQTS--KWIDDVRTERGSDVIIMLVGNKTDLSD 133
Query: 142 DRQ 144
RQ
Sbjct: 134 KRQ 136
>pdb|3GFT|A Chain A, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|B Chain B, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|C Chain C, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|D Chain D, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|E Chain E, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|F Chain F, Human K-Ras In Complex With A Gtp Analogue
Length = 187
Score = 70.5 bits (171), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 36/105 (34%), Positives = 58/105 (55%)
Query: 35 KTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGA 94
K+ L I N F +Y PT+ D++ V++DG T L + DTAG E+Y+ +R R
Sbjct: 34 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGHEEYSAMRDQYMRTG 93
Query: 95 DVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDL 139
+ F+ F++ + S+E+I + + + VP+VLVG K DL
Sbjct: 94 EGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDL 138
>pdb|2IF0|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IF0|B Chain B, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
Length = 200
Score = 70.1 bits (170), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 48/138 (34%), Positives = 70/138 (50%), Gaps = 15/138 (10%)
Query: 22 FIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMV------DGRT-----V 70
IK + + D VGKT L YT N F ++ TV +F +V DG + V
Sbjct: 11 LIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKAFKV 70
Query: 71 NLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELR--HYAPSV 128
+L LWDTAG E + L +R A F+L F L S+ S+ N+ + W+ +L+ Y +
Sbjct: 71 HLQLWDTAGLERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNV--RNWMSQLQANAYCENP 128
Query: 129 PIVLVGTKLDLRKDRQFH 146
IVL+G K DL R+ +
Sbjct: 129 DIVLIGNKADLPDQREVN 146
>pdb|1D5C|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab6 Complexed
With Gdp
Length = 162
Score = 70.1 bits (170), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 43/118 (36%), Positives = 63/118 (53%), Gaps = 4/118 (3%)
Query: 24 KCVTVRDGAVGKTCLLISYTGNTFPTDYVPTV-FDNFSANVMVDGRTVNLGLWDTAGQED 82
K V + + AVGKT ++ + +TF +Y T+ D S + +D V L LWDTAGQE
Sbjct: 3 KLVFLGEQAVGKTSIITRFXYDTFDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQER 62
Query: 83 YNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPE-LRHYAPSVPIVLVGTKLDL 139
+ L P R + I+ + + +R S+EN + KW+ + L V I LVG K DL
Sbjct: 63 FRSLIPSYIRDSAAAIVVYDITNRQSFENTT--KWIQDILNERGKDVIIALVGNKTDL 118
>pdb|2IEY|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Hexagonal Space Group
pdb|2IEY|B Chain B, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Hexagonal Space Group
Length = 195
Score = 70.1 bits (170), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 48/138 (34%), Positives = 69/138 (50%), Gaps = 15/138 (10%)
Query: 22 FIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMV------DGRT-----V 70
IK + + D VGKT L YT N F ++ TV +F +V DG + V
Sbjct: 11 LIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKAFKV 70
Query: 71 NLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELR--HYAPSV 128
+L LWDTAG E + L +R A F+L F L S+ S+ N+ + W +L+ Y +
Sbjct: 71 HLQLWDTAGLERFRSLTTAFFRDAXGFLLXFDLTSQQSFLNV--RNWXSQLQANAYCENP 128
Query: 129 PIVLVGTKLDLRKDRQFH 146
IVL+G K DL R+ +
Sbjct: 129 DIVLIGNKADLPDQREVN 146
>pdb|1NVV|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1XD2|A Chain A, Crystal Structure Of A Ternary Ras:sos:ras*gdp Complex
Length = 166
Score = 70.1 bits (170), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 36/105 (34%), Positives = 59/105 (56%)
Query: 35 KTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGA 94
K+ L I N F +Y PT+ D++ V++DG T L + DTAGQE+ + +R R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEASAMRDQYMRTG 75
Query: 95 DVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDL 139
+ F+ F++ + S+E+I + + + + VP+VLVG K DL
Sbjct: 76 EGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL 120
>pdb|1ZVQ|A Chain A, Structure Of The Q61g Mutant Of Ras In The Gdp-Bound Form
Length = 166
Score = 70.1 bits (170), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 36/105 (34%), Positives = 59/105 (56%)
Query: 35 KTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGA 94
K+ L I N F +Y PT+ D++ V++DG T L + DTAG E+Y+ +R R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGGEEYSAMRDQYMRTG 75
Query: 95 DVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDL 139
+ F+ F++ + S+E+I + + + + VP+VLVG K DL
Sbjct: 76 EGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL 120
>pdb|2ZET|A Chain A, Crystal Structure Of The Small Gtpase Rab27b Complexed
With The Slp Homology Domain Of Slac2-AMELANOPHILIN
pdb|2ZET|B Chain B, Crystal Structure Of The Small Gtpase Rab27b Complexed
With The Slp Homology Domain Of Slac2-AMELANOPHILIN
Length = 203
Score = 70.1 bits (170), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 48/138 (34%), Positives = 69/138 (50%), Gaps = 15/138 (10%)
Query: 22 FIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMV------DGRT-----V 70
IK + + D VGKT L YT N F ++ TV +F +V DG + V
Sbjct: 11 LIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKAFKV 70
Query: 71 NLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELR--HYAPSV 128
+L LWDTAG E + L +R A F+L F L S+ S+ N+ + W +L+ Y +
Sbjct: 71 HLQLWDTAGLERFRSLTTAFFRDAXGFLLXFDLTSQQSFLNV--RNWXSQLQANAYCENP 128
Query: 129 PIVLVGTKLDLRKDRQFH 146
IVL+G K DL R+ +
Sbjct: 129 DIVLIGNKADLPDQREVN 146
>pdb|2IEZ|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IEZ|B Chain B, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IEZ|H Chain H, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IEZ|I Chain I, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
Length = 220
Score = 69.7 bits (169), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 48/138 (34%), Positives = 70/138 (50%), Gaps = 15/138 (10%)
Query: 22 FIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMV------DGRT-----V 70
IK + + D VGKT L YT N F ++ TV +F +V DG + V
Sbjct: 11 LIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKAFKV 70
Query: 71 NLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELR--HYAPSV 128
+L LWDTAG E + L +R A F+L F L S+ S+ N+ + W+ +L+ Y +
Sbjct: 71 HLQLWDTAGLERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNV--RNWMSQLQANAYCENP 128
Query: 129 PIVLVGTKLDLRKDRQFH 146
IVL+G K DL R+ +
Sbjct: 129 DIVLIGNKADLPDQREVN 146
>pdb|721P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
pdb|2RGD|A Chain A, Crystal Structure Of H-Rasq61l-Gppnhp
pdb|3OIU|A Chain A, H-Rasq61l With Allosteric Switch In The "on" State
Length = 166
Score = 69.7 bits (169), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 36/105 (34%), Positives = 59/105 (56%)
Query: 35 KTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGA 94
K+ L I N F +Y PT+ D++ V++DG T L + DTAG E+Y+ +R R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGLEEYSAMRDQYMRTG 75
Query: 95 DVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDL 139
+ F+ F++ + S+E+I + + + + VP+VLVG K DL
Sbjct: 76 EGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL 120
>pdb|2IL1|A Chain A, Crystal Structure Of A Predicted Human Gtpase In Complex
With Gdp
Length = 192
Score = 69.7 bits (169), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 66/124 (53%), Gaps = 4/124 (3%)
Query: 23 IKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFS-ANVMVDGRTVNLGLWDTAGQE 81
++ + + VGKT L+ +T +TF TV +F V + G+ + L +WDTAGQE
Sbjct: 27 LQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQE 86
Query: 82 DYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPS-VPIVLVGTKLDLR 140
+N + YR A IL + + + +++++ KW+ + YA ++LVG KLD
Sbjct: 87 RFNSITSAYYRSAKGIILVYDITKKETFDDLP--KWMKMIDKYASEDAELLLVGNKLDCE 144
Query: 141 KDRQ 144
DR+
Sbjct: 145 TDRE 148
>pdb|2RGC|A Chain A, Crystal Structure Of H-Rasq61v-Gppnhp
Length = 166
Score = 69.7 bits (169), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 36/105 (34%), Positives = 59/105 (56%)
Query: 35 KTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGA 94
K+ L I N F +Y PT+ D++ V++DG T L + DTAG E+Y+ +R R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGVEEYSAMRDQYMRTG 75
Query: 95 DVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDL 139
+ F+ F++ + S+E+I + + + + VP+VLVG K DL
Sbjct: 76 EGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL 120
>pdb|1ZW6|A Chain A, Crystal Structure Of The Gtp-Bound Form Of Rasq61g
Length = 166
Score = 69.7 bits (169), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 36/105 (34%), Positives = 59/105 (56%)
Query: 35 KTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGA 94
K+ L I N F +Y PT+ D++ V++DG T L + DTAG E+Y+ +R R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETXLLDILDTAGGEEYSAMRDQYMRTG 75
Query: 95 DVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDL 139
+ F+ F++ + S+E+I + + + + VP+VLVG K DL
Sbjct: 76 EGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL 120
>pdb|2RGA|A Chain A, Crystal Structure Of H-Rasq61i-Gppnhp
pdb|2RGG|A Chain A, Crystal Structure Of H-Rasq61i-Gppnhp, Trigonal Crystal
Form
Length = 166
Score = 69.7 bits (169), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 36/105 (34%), Positives = 59/105 (56%)
Query: 35 KTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGA 94
K+ L I N F +Y PT+ D++ V++DG T L + DTAG E+Y+ +R R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGIEEYSAMRDQYMRTG 75
Query: 95 DVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDL 139
+ F+ F++ + S+E+I + + + + VP+VLVG K DL
Sbjct: 76 EGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL 120
>pdb|2ERX|A Chain A, Crystal Structure Of Diras2 In Complex With Gdp And
Inorganic Phosphate
pdb|2ERX|B Chain B, Crystal Structure Of Diras2 In Complex With Gdp And
Inorganic Phosphate
Length = 172
Score = 69.7 bits (169), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 37/117 (31%), Positives = 58/117 (49%), Gaps = 1/117 (0%)
Query: 31 GAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRLRPLS 90
G VGK+ L++ + TF Y+PTV D + + D L + DT G + ++ LS
Sbjct: 12 GGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVISCDKSICTLQITDTTGSHQFPAMQRLS 71
Query: 91 YRGADVFILAFSLISRPSYENISK-KKWVPELRHYAPSVPIVLVGTKLDLRKDRQFH 146
FIL +S+ SR S E + + + E++ S+PI+LVG K D R+
Sbjct: 72 ISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSREVQ 128
>pdb|4EFN|A Chain A, Crystal Structure Of H-Ras Q61l In Complex With Gppnhp
(State 1)
Length = 171
Score = 69.3 bits (168), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 36/105 (34%), Positives = 59/105 (56%)
Query: 35 KTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGA 94
K+ L I N F +Y PT+ D++ V++DG T L + DTAG E+Y+ +R R
Sbjct: 21 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGLEEYSAMRDQYMRTG 80
Query: 95 DVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDL 139
+ F+ F++ + S+E+I + + + + VP+VLVG K DL
Sbjct: 81 EGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL 125
>pdb|3RAB|A Chain A, Gppnhp-bound Rab3a At 2.0 A Resolution
Length = 169
Score = 69.3 bits (168), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 37/122 (30%), Positives = 66/122 (54%), Gaps = 4/122 (3%)
Query: 24 KCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMV-DGRTVNLGLWDTAGQED 82
K + + + +VGKT L Y ++F +V TV +F + + + + L +WDTAGQE
Sbjct: 7 KILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQER 66
Query: 83 YNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYA-PSVPIVLVGTKLDLRK 141
Y + YRGA FIL + + + S+ + + W +++ Y+ + ++LVG K D+
Sbjct: 67 YRTITTAYYRGAMGFILMYDITNEESFNAV--QDWSTQIKTYSWDNAQVLLVGNKCDMED 124
Query: 142 DR 143
+R
Sbjct: 125 ER 126
>pdb|2BKU|A Chain A, Kap95p:rangtp Complex
pdb|2BKU|C Chain C, Kap95p:rangtp Complex
Length = 177
Score = 69.3 bits (168), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 44/122 (36%), Positives = 61/122 (50%), Gaps = 4/122 (3%)
Query: 24 KCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRT-VNLGLWDTAGQED 82
K V V DG GKT + + F YVPT+ V R + +WDTAGQE
Sbjct: 12 KLVLVGDGGTGKTTFVKRHLTGEFEKKYVPTLGVEVHPLVFHTNRGPIKFNVWDTAGQEK 71
Query: 83 YNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKD 142
+ LR Y A I+ F + SR +Y+N+ W +L ++PIVL G K+D+ KD
Sbjct: 72 FGGLRDGYYIQAQCAIIMFDVTSRVTYKNVP--NWHRDLVRVCENIPIVLCGNKVDI-KD 128
Query: 143 RQ 144
R+
Sbjct: 129 RK 130
>pdb|2CL0|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gppnhp
pdb|2CL6|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With S-Caged Gtp
pdb|2CL7|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gtp
pdb|2CLC|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gtp (2)
pdb|2EVW|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With R-Caged Gtp
pdb|2CE2|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gdp
Length = 166
Score = 69.3 bits (168), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 36/105 (34%), Positives = 59/105 (56%)
Query: 35 KTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGA 94
K+ L I N F + PT+ D++ V++DG T L + DTAGQE+Y+ +R R
Sbjct: 16 KSALTIQLIQNHFVDECDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 75
Query: 95 DVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDL 139
+ F+ F++ + S+E+I + + + + VP+VLVG K DL
Sbjct: 76 EGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDL 120
>pdb|2GF9|A Chain A, Crystal Structure Of Human Rab3d In Complex With Gdp
Length = 189
Score = 68.9 bits (167), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 38/122 (31%), Positives = 66/122 (54%), Gaps = 4/122 (3%)
Query: 24 KCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSAN-VMVDGRTVNLGLWDTAGQED 82
K + + + +VGKT L Y ++F +V TV +F V + + L +WDTAGQE
Sbjct: 24 KLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQER 83
Query: 83 YNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYA-PSVPIVLVGTKLDLRK 141
Y + YRGA F+L + + ++ S+ + + W +++ Y+ + ++LVG K DL
Sbjct: 84 YRTITTAYYRGAMGFLLMYDIANQESFAAV--QDWATQIKTYSWDNAQVILVGNKCDLED 141
Query: 142 DR 143
+R
Sbjct: 142 ER 143
>pdb|3CON|A Chain A, Crystal Structure Of The Human Nras Gtpase Bound With Gdp
Length = 190
Score = 68.9 bits (167), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 36/105 (34%), Positives = 59/105 (56%)
Query: 35 KTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGA 94
K+ L I N F +Y PT+ D++ V++DG T L + DTAGQE+Y+ +R R
Sbjct: 34 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 93
Query: 95 DVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDL 139
+ F+ F++ + S+ +I+ + + + VP+VLVG K DL
Sbjct: 94 EGFLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDL 138
>pdb|3BC1|A Chain A, Crystal Structure Of The Complex Rab27a-slp2a
pdb|3BC1|E Chain E, Crystal Structure Of The Complex Rab27a-slp2a
Length = 195
Score = 68.6 bits (166), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 45/135 (33%), Positives = 67/135 (49%), Gaps = 15/135 (11%)
Query: 22 FIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMV-----------DGRTV 70
IK + + D VGKT +L YT F + ++ TV +F +V G+ +
Sbjct: 11 LIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRI 70
Query: 71 NLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSV-- 128
+L LWDTAG E + L +R A F+L F L + S+ N+ + W+ +L+ +A S
Sbjct: 71 HLQLWDTAGLERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNV--RNWISQLQMHAYSENP 128
Query: 129 PIVLVGTKLDLRKDR 143
IVL G K DL R
Sbjct: 129 DIVLCGNKSDLEDQR 143
>pdb|1BYU|A Chain A, Canine Gdp-Ran
pdb|1BYU|B Chain B, Canine Gdp-Ran
Length = 216
Score = 68.6 bits (166), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 44/122 (36%), Positives = 61/122 (50%), Gaps = 4/122 (3%)
Query: 24 KCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGR-TVNLGLWDTAGQED 82
K V V DG GKT + + F YVPT+ V R + +WDTAGQE
Sbjct: 12 KLVLVGDGGTGKTTFVKRHLTGEFEKKYVPTLGVEVHPLVFHTNRGPIKFNVWDTAGQEK 71
Query: 83 YNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKD 142
+ LR Y A I+ F + SR +Y+N+ W +L ++PIVL G K+D+ KD
Sbjct: 72 FGGLRDGYYIQAQCAIIMFDVTSRVTYKNVP--NWHRDLVRVCENIPIVLCGNKVDI-KD 128
Query: 143 RQ 144
R+
Sbjct: 129 RK 130
>pdb|1YZQ|A Chain A, Gppnhp-Bound Rab6 Gtpase
Length = 170
Score = 68.2 bits (165), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 40/127 (31%), Positives = 68/127 (53%), Gaps = 4/127 (3%)
Query: 24 KCVTVRDGAVGKTCLLISYTGNTFPTDYVPTV-FDNFSANVMVDGRTVNLGLWDTAGQED 82
K V + + +VGKT L+ + ++F Y T+ D S + ++ RT+ L LWDTAGQE
Sbjct: 8 KLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQER 67
Query: 83 YNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELR-HYAPSVPIVLVGTKLDLRK 141
+ L P R + ++ + + + S++ + KW+ ++R V I+LVG K DL
Sbjct: 68 FRSLIPSYIRDSAAAVVVYDITNVNSFQQTT--KWIDDVRTERGSDVIIMLVGNKTDLAD 125
Query: 142 DRQFHLD 148
RQ ++
Sbjct: 126 KRQVSIE 132
>pdb|1GUA|A Chain A, Human Rap1a, Residues 1-167, Double Mutant (E30d,K31e)
Complexed With Gppnhp And The Ras-Binding-Domain Of
Human C-Raf1, Residues 51-131
pdb|3KUC|A Chain A, Complex Of Rap1a(E30dK31E)GDP WITH RAFRBD(A85KN71R)
Length = 167
Score = 68.2 bits (165), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 60/120 (50%)
Query: 24 KCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDY 83
K V + G VGK+ L + + F +Y PT+ D++ V VD + L + DTAG E +
Sbjct: 5 KLVVLGSGGVGKSALTVQFVQGIFVDEYDPTIEDSYRKQVEVDCQQCMLEILDTAGTEQF 64
Query: 84 NRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKDR 143
+R L + F L +S+ ++ ++ ++ + VP++LVG K DL +R
Sbjct: 65 TAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDER 124
>pdb|3BRW|D Chain D, Structure Of The Rap-Rapgap Complex
pdb|3CF6|R Chain R, Structure Of Epac2 In Complex With Cyclic-Amp And Rap
Length = 167
Score = 68.2 bits (165), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 59/120 (49%)
Query: 24 KCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDY 83
K V + G VGK+ L + + F Y PT+ D++ V VD + L + DTAG E +
Sbjct: 5 KLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDAQQCMLEILDTAGTEQF 64
Query: 84 NRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKDR 143
+R L + F L +S+ ++ ++ ++ + VP++LVG K DL +R
Sbjct: 65 TAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTDDVPMILVGNKCDLEDER 124
>pdb|1Z0K|A Chain A, Structure Of Gtp-Bound Rab4q67l Gtpase In Complex With The
Central Rab Binding Domain Of Rabenosyn-5
pdb|1Z0K|C Chain C, Structure Of Gtp-Bound Rab4q67l Gtpase In Complex With The
Central Rab Binding Domain Of Rabenosyn-5
Length = 172
Score = 67.8 bits (164), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 39/125 (31%), Positives = 64/125 (51%), Gaps = 4/125 (3%)
Query: 22 FIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVM-VDGRTVNLGLWDTAGQ 80
K + + + GK+CLL + F D T+ F + ++ V G+ V L +WDTAG
Sbjct: 8 LFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGL 67
Query: 81 EDYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAP-SVPIVLVGTKLDL 139
E + + YRGA +L + + SR +Y ++ W+ + R A ++ I+L G K DL
Sbjct: 68 ERFRSVTRSYYRGAAGALLVYDITSRETYNALT--NWLTDARMLASQNIVIILCGNKKDL 125
Query: 140 RKDRQ 144
DR+
Sbjct: 126 DADRE 130
>pdb|2FG5|A Chain A, Crystal Structure Of Human Rab31 In Complex With A Gtp
Analogue
Length = 192
Score = 67.8 bits (164), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 39/136 (28%), Positives = 70/136 (51%), Gaps = 4/136 (2%)
Query: 23 IKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGL-WDTAGQE 81
+K + D VGK+ ++ + + F + PT+ +F + G ++ L WDTAGQE
Sbjct: 24 LKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQE 83
Query: 82 DYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAP-SVPIVLVGTKLDLR 140
++ L P+ YRG+ ++ + + + S+ + KKWV EL+ + P ++ + + G K DL
Sbjct: 84 RFHSLAPMYYRGSAAAVIVYDITKQDSFYTL--KKWVKELKEHGPENIVMAIAGNKCDLS 141
Query: 141 KDRQFHLDYPGAYTIS 156
R+ L Y S
Sbjct: 142 DIREVPLKDAKEYAES 157
>pdb|1C1Y|A Chain A, Crystal Structure Of Rap.Gmppnp In Complex With The Ras-
Binding-Domain Of C-Raf1 Kinase (Rafrbd)
Length = 167
Score = 67.4 bits (163), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 59/120 (49%)
Query: 24 KCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDY 83
K V + G VGK+ L + + F Y PT+ D++ V VD + L + DTAG E +
Sbjct: 5 KLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDCQQCMLEILDTAGTEQF 64
Query: 84 NRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKDR 143
+R L + F L +S+ ++ ++ ++ + VP++LVG K DL +R
Sbjct: 65 TAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDER 124
>pdb|3CWZ|A Chain A, Strucure Of Rab6(Gtp)-R6ip1 Complex
Length = 188
Score = 67.4 bits (163), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 41/127 (32%), Positives = 68/127 (53%), Gaps = 4/127 (3%)
Query: 24 KCVTVRDGAVGKTCLLISYTGNTFPTDYVPTV-FDNFSANVMVDGRTVNLGLWDTAGQED 82
K V + + +VGKT L+ + ++F Y T+ D S + ++ RTV L LWDTAG E
Sbjct: 8 KLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGLER 67
Query: 83 YNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELR-HYAPSVPIVLVGTKLDLRK 141
+ L P R + V ++ + + + S++ + KW+ ++R V I+LVG K DL
Sbjct: 68 FRSLIPSYIRDSTVAVVVYDITNVNSFQQTT--KWIDDVRTERGSDVIIMLVGNKTDLAD 125
Query: 142 DRQFHLD 148
RQ ++
Sbjct: 126 KRQVSIE 132
>pdb|1Z06|A Chain A, Gppnhp-Bound Rab33 Gtpase
Length = 189
Score = 67.0 bits (162), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 38/138 (27%), Positives = 64/138 (46%), Gaps = 6/138 (4%)
Query: 21 KFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVM-VDGRTVNLGLWDTAG 79
+ K + + D VGKTCL + FP T+ +F + +DG + + LWDTAG
Sbjct: 19 RIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAG 78
Query: 80 QEDYNR-LRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHY--APSVPIVLVGTK 136
QE + + + YR + + + + S+ ++ W+ E + + A +P +LVG K
Sbjct: 79 QERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLP--AWIEECKQHLLANDIPRILVGNK 136
Query: 137 LDLRKDRQFHLDYPGAYT 154
DLR Q D +
Sbjct: 137 CDLRSAIQVPTDLAQKFA 154
>pdb|1QG4|A Chain A, Canine Gdp-Ran F72y Mutant
pdb|1QG4|B Chain B, Canine Gdp-Ran F72y Mutant
Length = 216
Score = 67.0 bits (162), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 44/122 (36%), Positives = 60/122 (49%), Gaps = 4/122 (3%)
Query: 24 KCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGR-TVNLGLWDTAGQED 82
K V V DG GKT + + F YV T+ V R + +WDTAGQE
Sbjct: 12 KLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEK 71
Query: 83 YNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKD 142
Y LR Y A I+ F + SR +Y+N+ W +L ++PIVL G K+D+ KD
Sbjct: 72 YGGLRDGYYIQAQCAIIMFDVTSRVTYKNVP--NWHRDLVRVCENIPIVLCGNKVDI-KD 128
Query: 143 RQ 144
R+
Sbjct: 129 RK 130
>pdb|3BBP|A Chain A, Rab6-Gtp:gcc185 Rab Binding Domain Complex
pdb|3BBP|B Chain B, Rab6-Gtp:gcc185 Rab Binding Domain Complex
pdb|3BBP|C Chain C, Rab6-Gtp:gcc185 Rab Binding Domain Complex
Length = 211
Score = 66.6 bits (161), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 41/127 (32%), Positives = 69/127 (54%), Gaps = 4/127 (3%)
Query: 24 KCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVM-VDGRTVNLGLWDTAGQED 82
K V + + +VGKT L+ + ++F Y T+ +F + M ++ RTV L LWDTAG E
Sbjct: 18 KLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGLER 77
Query: 83 YNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELR-HYAPSVPIVLVGTKLDLRK 141
+ L P R + V ++ + + + S++ + KW+ ++R V I+LVG K DL
Sbjct: 78 FRSLIPSYIRDSTVAVVVYDITNVNSFQQTT--KWIDDVRTERGSDVIIMLVGNKTDLAD 135
Query: 142 DRQFHLD 148
RQ ++
Sbjct: 136 KRQVSIE 142
>pdb|2FN4|A Chain A, The Crystal Structure Of Human Ras-Related Protein, Rras,
In The Gdp- Bound State
Length = 181
Score = 66.6 bits (161), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 39/111 (35%), Positives = 58/111 (52%), Gaps = 2/111 (1%)
Query: 35 KTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGA 94
K+ L I + + F +DY PT+ D+++ VDG L + DTAGQE++ +R R
Sbjct: 22 KSALTIQFIQSYFVSDYDPTIEDSYTKICSVDGIPARLDILDTAGQEEFGAMREQYMRAG 81
Query: 95 DVFILAFSLISRPSYENISKKKWVPELR-HYAPSVPIVLVGTKLDLRKDRQ 144
F+L F++ R S+ + K + LR P+VLVG K DL RQ
Sbjct: 82 HGFLLVFAINDRQSFNEVG-KLFTQILRVKDRDDFPVVLVGNKADLESQRQ 131
>pdb|1WA5|A Chain A, Crystal Structure Of The Exportin Cse1p Complexed With Its
Cargo (Kap60p) And Rangtp
Length = 176
Score = 66.2 bits (160), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 43/122 (35%), Positives = 60/122 (49%), Gaps = 4/122 (3%)
Query: 24 KCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRT-VNLGLWDTAGQED 82
K V V DG GKT + + F YV T+ V R + +WDTAGQE
Sbjct: 12 KLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEK 71
Query: 83 YNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKD 142
+ LR Y A I+ F + SR +Y+N+ W +L ++PIVL G K+D+ KD
Sbjct: 72 FGGLRDGYYIQAQCAIIMFDVTSRVTYKNVP--NWHRDLVRVCENIPIVLCGNKVDI-KD 128
Query: 143 RQ 144
R+
Sbjct: 129 RK 130
>pdb|1YVD|A Chain A, Gppnhp-Bound Rab22 Gtpase
Length = 169
Score = 66.2 bits (160), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 63/124 (50%), Gaps = 4/124 (3%)
Query: 23 IKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNF-SANVMVDGRTVNLGLWDTAGQE 81
+K + D VGK+ ++ + ++F + PT+ +F + V +WDTAGQE
Sbjct: 6 LKVCLLGDTGVGKSSIVWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGQE 65
Query: 82 DYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELR-HYAPSVPIVLVGTKLDLR 140
+ L P+ YRG+ I+ + + ++ + K WV ELR H PS+ + + G K DL
Sbjct: 66 RFRALAPMYYRGSAAAIIVYDITKEETFSTL--KNWVRELRQHGPPSIVVAIAGNKCDLT 123
Query: 141 KDRQ 144
R+
Sbjct: 124 DVRE 127
>pdb|2G77|B Chain B, Crystal Structure Of Gyp1 Tbc Domain In Complex With Rab33
Gtpase Bound To Gdp And Alf3
Length = 198
Score = 65.9 bits (159), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 38/132 (28%), Positives = 62/132 (46%), Gaps = 6/132 (4%)
Query: 21 KFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVM-VDGRTVNLGLWDTAG 79
+ K + + D VGKTCL + FP T+ +F + +DG + + LWDTAG
Sbjct: 28 RIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAG 87
Query: 80 QEDYNR-LRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHY--APSVPIVLVGTK 136
QE + + + YR + + + S+ ++ W+ E + + A +P +LVG K
Sbjct: 88 QERFRKSMVQHYYRNVHAVVFVYDXTNXASFHSLP--AWIEECKQHLLANDIPRILVGNK 145
Query: 137 LDLRKDRQFHLD 148
DLR Q D
Sbjct: 146 CDLRSAIQVPTD 157
>pdb|1RRP|A Chain A, Structure Of The Ran-Gppnhp-Ranbd1 Complex
pdb|1RRP|C Chain C, Structure Of The Ran-Gppnhp-Ranbd1 Complex
Length = 204
Score = 65.5 bits (158), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 43/122 (35%), Positives = 60/122 (49%), Gaps = 4/122 (3%)
Query: 24 KCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGR-TVNLGLWDTAGQED 82
K V V DG GKT + + F YV T+ V R + +WDTAGQE
Sbjct: 5 KLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEK 64
Query: 83 YNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKD 142
+ LR Y A I+ F + SR +Y+N+ W +L ++PIVL G K+D+ KD
Sbjct: 65 FGGLRDGYYIQAQCAIIMFDVTSRVTYKNVP--NWHRDLVRVCENIPIVLCGNKVDI-KD 121
Query: 143 RQ 144
R+
Sbjct: 122 RK 123
>pdb|1QBK|C Chain C, Structure Of The Karyopherin Beta2-ran Gppnhp Nuclear
Transport Complex
Length = 216
Score = 65.5 bits (158), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 43/122 (35%), Positives = 60/122 (49%), Gaps = 4/122 (3%)
Query: 24 KCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGR-TVNLGLWDTAGQED 82
K V V DG GKT + + F YV T+ V R + +WDTAGQE
Sbjct: 12 KLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEK 71
Query: 83 YNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKD 142
+ LR Y A I+ F + SR +Y+N+ W +L ++PIVL G K+D+ KD
Sbjct: 72 FGGLRDGYYIQAQCAIIXFDVTSRVTYKNVP--NWHRDLVRVCENIPIVLCGNKVDI-KD 128
Query: 143 RQ 144
R+
Sbjct: 129 RK 130
>pdb|3EA5|A Chain A, Kap95p Binding Induces The Switch Loops Of Rangdp To Adopt
The Gtp- Bound Conformation: Implications For Nuclear
Import Complex Assembly Dynamics
pdb|3EA5|C Chain C, Kap95p Binding Induces The Switch Loops Of Rangdp To Adopt
The Gtp- Bound Conformation: Implications For Nuclear
Import Complex Assembly Dynamics
Length = 216
Score = 65.5 bits (158), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 43/122 (35%), Positives = 60/122 (49%), Gaps = 4/122 (3%)
Query: 24 KCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGR-TVNLGLWDTAGQED 82
K V V DG GKT + + F YV T+ V R + +WDTAGQE
Sbjct: 12 KLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEK 71
Query: 83 YNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKD 142
+ LR Y A I+ F + SR +Y+N+ W +L ++PIVL G K+D+ KD
Sbjct: 72 FGGLRDGYYIQAQCAIIMFDVTSRVTYKNVP--NWHRDLVRVCENIPIVLCGNKVDI-KD 128
Query: 143 RQ 144
R+
Sbjct: 129 RK 130
>pdb|1A2K|C Chain C, Gdpran-Ntf2 Complex
pdb|1A2K|D Chain D, Gdpran-Ntf2 Complex
pdb|1A2K|E Chain E, Gdpran-Ntf2 Complex
pdb|1IBR|A Chain A, Complex Of Ran With Importin Beta
pdb|1IBR|C Chain C, Complex Of Ran With Importin Beta
pdb|1I2M|A Chain A, Ran-Rcc1-So4 Complex
pdb|1I2M|C Chain C, Ran-Rcc1-So4 Complex
pdb|1K5D|A Chain A, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|D Chain D, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|G Chain G, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|J Chain J, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5G|A Chain A, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|D Chain D, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|G Chain G, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|J Chain J, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|3CH5|A Chain A, The Crystal Structure Of The Rangdp-Nup153znf2 Complex
pdb|3A6P|C Chain C, Crystal Structure Of Exportin-5:rangtp:pre-Mirna Complex
pdb|3A6P|H Chain H, Crystal Structure Of Exportin-5:rangtp:pre-Mirna Complex
pdb|4GPT|A Chain A, Crystal Structure Of Kpt251 In Complex With
Crm1-ran-ranbp1
pdb|4GMX|A Chain A, Crystal Structure Of Kpt185 In Complex With
Crm1-Ran-Ranbp1
pdb|4HAT|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1- Ran-ranbp1
pdb|4HAU|A Chain A, Crystal Structure Of Crm1 Inhibitor Ratjadone A In Complex
With Crm1- Ran-ranbp1
pdb|4HAV|A Chain A, Crystal Structure Of Crm1 Inhibitor Anguinomycin A In
Complex With Crm1-ran-ranbp1
pdb|4HAW|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(k548a)-ran-ranbp1
pdb|4HAX|A Chain A, Crystal Structure Of Crm1 Inhibitor Ratjadone A In Complex
With Crm1(k579a)-ran-ranbp1
pdb|4HAY|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(k548e,k579q)-ran-ranbp1
pdb|4HAZ|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(r543s,k548e,k579q)-ran-ranbp1
pdb|4HB0|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With
Crm1(k541q,k542q,r543s,k545q,k548q,k579q)-ran-ranbp1
pdb|4HB2|A Chain A, Crystal Structure Of Crm1-ran-ranbp1
pdb|4HB3|A Chain A, Crystal Structure Of Crm1(t539s)-ran-ranbp1 Soaked In
Excess Crm1 Inhibitor Leptomycin B
pdb|4HB4|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(537dltvk541/glceq)-ran-ranbp1
Length = 216
Score = 65.5 bits (158), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 43/122 (35%), Positives = 60/122 (49%), Gaps = 4/122 (3%)
Query: 24 KCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGR-TVNLGLWDTAGQED 82
K V V DG GKT + + F YV T+ V R + +WDTAGQE
Sbjct: 12 KLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEK 71
Query: 83 YNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKD 142
+ LR Y A I+ F + SR +Y+N+ W +L ++PIVL G K+D+ KD
Sbjct: 72 FGGLRDGYYIQAQCAIIMFDVTSRVTYKNVP--NWHRDLVRVCENIPIVLCGNKVDI-KD 128
Query: 143 RQ 144
R+
Sbjct: 129 RK 130
>pdb|3GJ0|A Chain A, Crystal Structure Of Human Rangdp
pdb|3GJ0|B Chain B, Crystal Structure Of Human Rangdp
pdb|3GJ3|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf2 Complex
Length = 221
Score = 65.5 bits (158), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 43/122 (35%), Positives = 60/122 (49%), Gaps = 4/122 (3%)
Query: 24 KCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGR-TVNLGLWDTAGQED 82
K V V DG GKT + + F YV T+ V R + +WDTAGQE
Sbjct: 17 KLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEK 76
Query: 83 YNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKD 142
+ LR Y A I+ F + SR +Y+N+ W +L ++PIVL G K+D+ KD
Sbjct: 77 FGGLRDGYYIQAQCAIIMFDVTSRVTYKNVP--NWHRDLVRVCENIPIVLCGNKVDI-KD 133
Query: 143 RQ 144
R+
Sbjct: 134 RK 135
>pdb|1ZBD|A Chain A, Structural Basis Of Rab Effector Specificity: Crystal
Structure Of The Small G Protein Rab3a Complexed With
The Effector Domain Of Rabphilin-3a
Length = 203
Score = 65.5 bits (158), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 36/123 (29%), Positives = 64/123 (52%), Gaps = 4/123 (3%)
Query: 23 IKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMV-DGRTVNLGLWDTAGQE 81
K + + + +VGKT L Y ++F +V TV +F + + + + L +WDTAG E
Sbjct: 9 FKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLE 68
Query: 82 DYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYA-PSVPIVLVGTKLDLR 140
Y + YRGA FIL + + + S+ + + W +++ Y+ + ++LVG K D
Sbjct: 69 RYRTITTAYYRGAXGFILXYDITNEESFNAV--QDWSTQIKTYSWDNAQVLLVGNKCDXE 126
Query: 141 KDR 143
+R
Sbjct: 127 DER 129
>pdb|4DKX|A Chain A, Crystal Structure Of The Rab 6a'(Q72l)
pdb|4DKX|B Chain B, Crystal Structure Of The Rab 6a'(Q72l)
Length = 216
Score = 64.3 bits (155), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 39/127 (30%), Positives = 68/127 (53%), Gaps = 4/127 (3%)
Query: 24 KCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVM-VDGRTVNLGLWDTAGQED 82
K V + + +VGKT L+ + ++F Y T+ +F + M ++ RT+ L LWDTAG E
Sbjct: 15 KLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLER 74
Query: 83 YNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELR-HYAPSVPIVLVGTKLDLRK 141
+ L P R + ++ + + + S++ + KW+ ++R V I+LVG K DL
Sbjct: 75 FRSLIPSYIRDSAAAVVVYDITNVNSFQQTT--KWIDDVRTERGSDVIIMLVGNKTDLAD 132
Query: 142 DRQFHLD 148
RQ ++
Sbjct: 133 KRQVSIE 139
>pdb|3RWM|B Chain B, Crystal Structure Of Ypt32 In Complex With Gppnhp
pdb|3RWO|B Chain B, Crystal Structure Of Ypt32 In Complex With Gdp
pdb|3RWO|A Chain A, Crystal Structure Of Ypt32 In Complex With Gdp
Length = 185
Score = 64.3 bits (155), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 41/139 (29%), Positives = 66/139 (47%), Gaps = 4/139 (2%)
Query: 22 FIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSA-NVMVDGRTVNLGLWDTAGQ 80
K V + D VGK+ LL +T + F + T+ F+ + V+ + + +WDTAG
Sbjct: 10 LFKIVLIGDSGVGKSNLLSRFTTDEFNIESKSTIGVEFATRTIEVENKKIKAQIWDTAGL 69
Query: 81 EDYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYA-PSVPIVLVGTKLDL 139
E Y + YRGA ++ + + SYEN + W+ ELR A +V + L+G K DL
Sbjct: 70 ERYRAITSAYYRGAVGALIVYDISKSSSYENCN--HWLTELRENADDNVAVGLIGNKSDL 127
Query: 140 RKDRQFHLDYPGAYTISTE 158
R D + + +
Sbjct: 128 AHLRAVPTDEAKNFAMENQ 146
>pdb|4DXA|A Chain A, Co-Crystal Structure Of Rap1 In Complex With Krit1
Length = 169
Score = 64.3 bits (155), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 58/120 (48%)
Query: 24 KCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDY 83
K V + VGK+ L + + F Y PT+ D++ V VD + L + DTAG E +
Sbjct: 7 KLVVLGSVGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDAQQCMLEILDTAGTEQF 66
Query: 84 NRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKDR 143
+R L + F L +S+ ++ ++ ++ + VP++LVG K DL +R
Sbjct: 67 TAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTDDVPMILVGNKCDLEDER 126
>pdb|3RAP|R Chain R, The Small G Protein Rap2 In A Non Catalytic Complex With
Gtp
pdb|3RAP|S Chain S, The Small G Protein Rap2 In A Non Catalytic Complex With
Gtp
pdb|1KAO|A Chain A, Crystal Structure Of The Small G Protein Rap2a With Gdp
pdb|2RAP|A Chain A, The Small G Protein Rap2a In Complex With Gtp
Length = 167
Score = 63.9 bits (154), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 34/106 (32%), Positives = 58/106 (54%), Gaps = 2/106 (1%)
Query: 35 KTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGA 94
K+ L + + TF Y PT+ D + + VD L + DTAG E + +R L +
Sbjct: 16 KSALTVQFVTGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNG 75
Query: 95 DVFILAFSLISRPSYENIS-KKKWVPELRHYAPSVPIVLVGTKLDL 139
FIL +SL+++ S+++I + + ++ Y VP++LVG K+DL
Sbjct: 76 QGFILVYSLVNQQSFQDIKPMRDQIIRVKRY-EKVPVILVGNKVDL 120
>pdb|1Z0J|A Chain A, Structure Of Gtp-Bound Rab22q64l Gtpase In Complex With
The Minimal Rab Binding Domain Of Rabenosyn-5
Length = 170
Score = 63.5 bits (153), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 36/124 (29%), Positives = 62/124 (50%), Gaps = 4/124 (3%)
Query: 23 IKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNF-SANVMVDGRTVNLGLWDTAGQE 81
+K + D VGK+ ++ + ++F + PT+ +F + V +WDTAG E
Sbjct: 7 LKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLE 66
Query: 82 DYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELR-HYAPSVPIVLVGTKLDLR 140
+ L P+ YRG+ I+ + + ++ + K WV ELR H PS+ + + G K DL
Sbjct: 67 RFRALAPMYYRGSAAAIIVYDITKEETFSTL--KNWVRELRQHGPPSIVVAIAGNKCDLT 124
Query: 141 KDRQ 144
R+
Sbjct: 125 DVRE 128
>pdb|1QG2|A Chain A, Canine Gdp-Ran R76e Mutant
Length = 216
Score = 63.5 bits (153), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 42/122 (34%), Positives = 59/122 (48%), Gaps = 4/122 (3%)
Query: 24 KCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGR-TVNLGLWDTAGQED 82
K V V DG GKT + + F YV T+ V R + +WDTAGQE
Sbjct: 12 KLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEK 71
Query: 83 YNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKD 142
+ L Y A I+ F + SR +Y+N+ W +L ++PIVL G K+D+ KD
Sbjct: 72 FGGLEDGYYIQAQCAIIMFDVTSRVTYKNVP--NWHRDLVRVCENIPIVLCGNKVDI-KD 128
Query: 143 RQ 144
R+
Sbjct: 129 RK 130
>pdb|3NC1|C Chain C, Crystal Structure Of The Crm1-Rangtp Complex
Length = 182
Score = 63.2 bits (152), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 42/122 (34%), Positives = 59/122 (48%), Gaps = 4/122 (3%)
Query: 24 KCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRT-VNLGLWDTAGQED 82
K V V DG GKT + + F YV T+ V R + +WDTAG E
Sbjct: 14 KLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGLEK 73
Query: 83 YNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKD 142
+ LR Y A I+ F + SR +Y+N+ W +L ++PIVL G K+D+ KD
Sbjct: 74 FGGLRDGYYIQAQCAIIMFDVTSRVTYKNVP--NWHRDLVRVCENIPIVLCGNKVDI-KD 130
Query: 143 RQ 144
R+
Sbjct: 131 RK 132
>pdb|3NBY|C Chain C, Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclear
Export Complex
pdb|3NBY|F Chain F, Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclear
Export Complex
pdb|3NBZ|C Chain C, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal I)
pdb|3NBZ|F Chain F, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal I)
pdb|3NC0|C Chain C, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal Ii)
pdb|3NC0|F Chain F, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal Ii)
Length = 176
Score = 62.8 bits (151), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 42/122 (34%), Positives = 59/122 (48%), Gaps = 4/122 (3%)
Query: 24 KCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRT-VNLGLWDTAGQED 82
K V V DG GKT + + F YV T+ V R + +WDTAG E
Sbjct: 8 KLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGLEK 67
Query: 83 YNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKD 142
+ LR Y A I+ F + SR +Y+N+ W +L ++PIVL G K+D+ KD
Sbjct: 68 FGGLRDGYYIQAQCAIIMFDVTSRVTYKNVP--NWHRDLVRVCENIPIVLCGNKVDI-KD 124
Query: 143 RQ 144
R+
Sbjct: 125 RK 126
>pdb|3RAN|A Chain A, Canine Gdp-Ran Q69l Mutant
pdb|3RAN|C Chain C, Canine Gdp-Ran Q69l Mutant
pdb|3RAN|D Chain D, Canine Gdp-Ran Q69l Mutant
pdb|3RAN|B Chain B, Canine Gdp-Ran Q69l Mutant
pdb|3GJX|C Chain C, Crystal Structure Of The Nuclear Export Complex Crm1-
Snurportin1-Rangtp
pdb|3GJX|F Chain F, Crystal Structure Of The Nuclear Export Complex Crm1-
Snurportin1-Rangtp
Length = 216
Score = 62.4 bits (150), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 42/122 (34%), Positives = 59/122 (48%), Gaps = 4/122 (3%)
Query: 24 KCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGR-TVNLGLWDTAGQED 82
K V V DG GKT + + F YV T+ V R + +WDTAG E
Sbjct: 12 KLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGLEK 71
Query: 83 YNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKD 142
+ LR Y A I+ F + SR +Y+N+ W +L ++PIVL G K+D+ KD
Sbjct: 72 FGGLRDGYYIQAQCAIIMFDVTSRVTYKNVP--NWHRDLVRVCENIPIVLCGNKVDI-KD 128
Query: 143 RQ 144
R+
Sbjct: 129 RK 130
>pdb|3GJ4|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf3 Complex
pdb|3GJ4|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf3 Complex
pdb|3GJ5|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf4 Complex
pdb|3GJ5|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf4 Complex
pdb|3GJ6|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf1 Complex
pdb|3GJ7|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf12 Complex
pdb|3GJ7|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf12 Complex
pdb|3GJ8|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf34 Complex
pdb|3GJ8|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf34 Complex
Length = 221
Score = 62.0 bits (149), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 42/122 (34%), Positives = 59/122 (48%), Gaps = 4/122 (3%)
Query: 24 KCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGR-TVNLGLWDTAGQED 82
K V V DG GKT + + YV T+ V R + +WDTAGQE
Sbjct: 17 KLVLVGDGGTGKTTFVKRHLTGESEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEK 76
Query: 83 YNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKD 142
+ LR Y A I+ F + SR +Y+N+ W +L ++PIVL G K+D+ KD
Sbjct: 77 FGGLRDGYYIQAQCAIIMFDVTSRVTYKNVP--NWHRDLVRVCENIPIVLCGNKVDI-KD 133
Query: 143 RQ 144
R+
Sbjct: 134 RK 135
>pdb|3KKP|A Chain A, Crystal Structure Of M-Ras P40d In Complex With Gppnhp
pdb|3KKQ|A Chain A, Crystal Structure Of M-Ras P40d In Complex With Gdp
Length = 183
Score = 61.6 bits (148), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 59/110 (53%)
Query: 35 KTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGA 94
K+ L I + F DY PT+ D++ + +D + L + DTAGQE+++ +R R
Sbjct: 31 KSALTIQFFQKIFVDDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTG 90
Query: 95 DVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKDRQ 144
D F++ +S+ + S+E++ + + S P++LV K+DL R+
Sbjct: 91 DGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRK 140
>pdb|1X1R|A Chain A, Crystal Structure Of M-Ras In Complex With Gdp
pdb|1X1S|A Chain A, Crystal Structure Of M-ras In Complex With Gppnhp
Length = 178
Score = 61.2 bits (147), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 59/110 (53%)
Query: 35 KTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGA 94
K+ L I + F DY PT+ D++ + +D + L + DTAGQE+++ +R R
Sbjct: 26 KSALTIQFFQKIFVPDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTG 85
Query: 95 DVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKDRQ 144
D F++ +S+ + S+E++ + + S P++LV K+DL R+
Sbjct: 86 DGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRK 135
>pdb|2X19|A Chain A, Crystal Structure Of Importin13 - Rangtp Complex
Length = 172
Score = 60.8 bits (146), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 36/121 (29%), Positives = 59/121 (48%), Gaps = 3/121 (2%)
Query: 24 KCVTVRDGAVGKTCLLISYTGNTFPTDYVPTV-FDNFSANVMVDGRTVNLGLWDTAGQED 82
K V V DG GKT + + F Y+ T+ + + + + +WDTAG E
Sbjct: 7 KLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFGEIKFDVWDTAGLEK 66
Query: 83 YNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKD 142
+ LR Y A I+ F + SR +Y+N+ W +L ++PIVL G K+D+++
Sbjct: 67 FGGLRDGYYINAQCAIIMFDVTSRITYKNVP--NWHRDLVRVCENIPIVLCGNKVDVKER 124
Query: 143 R 143
+
Sbjct: 125 K 125
>pdb|3ICQ|B Chain B, Karyopherin Nuclear State
pdb|3ICQ|C Chain C, Karyopherin Nuclear State
Length = 171
Score = 60.8 bits (146), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 36/121 (29%), Positives = 59/121 (48%), Gaps = 3/121 (2%)
Query: 24 KCVTVRDGAVGKTCLLISYTGNTFPTDYVPTV-FDNFSANVMVDGRTVNLGLWDTAGQED 82
K V V DG GKT + + F Y+ T+ + + + + +WDTAG E
Sbjct: 6 KLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFGEIKFDVWDTAGLEK 65
Query: 83 YNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKD 142
+ LR Y A I+ F + SR +Y+N+ W +L ++PIVL G K+D+++
Sbjct: 66 FGGLRDGYYINAQCAIIMFDVTSRITYKNVP--NWHRDLVRVCENIPIVLCGNKVDVKER 123
Query: 143 R 143
+
Sbjct: 124 K 124
>pdb|2GF0|A Chain A, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
pdb|2GF0|B Chain B, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
pdb|2GF0|C Chain C, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
pdb|2GF0|D Chain D, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
Length = 199
Score = 60.8 bits (146), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 34/125 (27%), Positives = 60/125 (48%), Gaps = 4/125 (3%)
Query: 35 KTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGA 94
K+ L++ + TF Y+PT+ D + + D L + DT G + ++ LS
Sbjct: 21 KSSLVLRFVKGTFRDTYIPTIEDTYRQVISCDKSVCTLQITDTTGSHQFPAMQRLSISKG 80
Query: 95 DVFILAFSLISRPSYENISK-KKWVPELRHYAPSVPIVLVGTKLDLRKDRQFHLDYPGAY 153
FIL FS+ S+ S E + K + +++ +P++LVG K D + Q +D A
Sbjct: 81 HAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCD---ETQREVDTREAQ 137
Query: 154 TISTE 158
++ E
Sbjct: 138 AVAQE 142
>pdb|3KKO|A Chain A, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP
pdb|3KKO|B Chain B, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP
pdb|3KKO|P Chain P, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP
Length = 183
Score = 60.5 bits (145), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 60/114 (52%)
Query: 35 KTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGA 94
K+ L I + F +Y PT+ D++ + +D + L + DTAGQE+++ +R R
Sbjct: 31 KSALTIQFFQKIFVDEYDPTIEDSYRKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTG 90
Query: 95 DVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKDRQFHLD 148
D F++ +S+ + S+E++ + + S P++LV K+DL R+ D
Sbjct: 91 DGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRD 144
>pdb|3OES|A Chain A, Crystal Structure Of The Small Gtpase Rhebl1
Length = 201
Score = 60.1 bits (144), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 42/125 (33%), Positives = 63/125 (50%), Gaps = 2/125 (1%)
Query: 21 KFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQ 80
++ K V + VGKT L + F Y PTV + +S V + +L L DTAGQ
Sbjct: 23 RYRKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTYSKIVTLGKDEFHLHLVDTAGQ 82
Query: 81 EDYNRLRPLSY-RGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDL 139
++Y+ L P S+ G ++L +S+ S S++ I H VP+VLVG K DL
Sbjct: 83 DEYSIL-PYSFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKADL 141
Query: 140 RKDRQ 144
+R+
Sbjct: 142 SPERE 146
>pdb|3M1I|A Chain A, Crystal Structure Of Yeast Crm1 (Xpo1p) In Complex With
Yeas (Yrb1p) And Yeast Rangtp (Gsp1pgtp)
Length = 219
Score = 60.1 bits (144), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 36/121 (29%), Positives = 59/121 (48%), Gaps = 3/121 (2%)
Query: 24 KCVTVRDGAVGKTCLLISYTGNTFPTDYVPTV-FDNFSANVMVDGRTVNLGLWDTAGQED 82
K V V DG GKT + + F Y+ T+ + + + + +WDTAG E
Sbjct: 14 KLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFGEIKFDVWDTAGLEK 73
Query: 83 YNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKD 142
+ LR Y A I+ F + SR +Y+N+ W +L ++PIVL G K+D+++
Sbjct: 74 FGGLRDGYYINAQCAIIMFDVTSRITYKNVP--NWHRDLVRVCENIPIVLCGNKVDVKER 131
Query: 143 R 143
+
Sbjct: 132 K 132
>pdb|3PIR|A Chain A, Crystal Structure Of M-Rasd41e In Complex With Gppnhp
(Type 1)
pdb|3PIT|A Chain A, Crystal Structure Of M-Rasd41e In Complex With Gppnhp
(Type 2)
Length = 183
Score = 59.7 bits (143), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 60/114 (52%)
Query: 35 KTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGA 94
K+ L I + F +Y PT+ D++ + +D + L + DTAGQE+++ +R R
Sbjct: 31 KSALTIQFFQKIFVPEYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTG 90
Query: 95 DVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKDRQFHLD 148
D F++ +S+ + S+E++ + + S P++LV K+DL R+ D
Sbjct: 91 DGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRD 144
>pdb|2ATV|A Chain A, The Crystal Structure Of Human Rerg In The Gdp Bound State
Length = 196
Score = 58.9 bits (141), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 57/114 (50%), Gaps = 1/114 (0%)
Query: 31 GAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRLRPLS 90
VGK+ L++ + F +Y PT+ + +D V++ + DTAGQED + R
Sbjct: 37 AGVGKSALVVRFLTKRFIWEYDPTLESTYRHQATIDDEVVSMEILDTAGQEDTIQ-REGH 95
Query: 91 YRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKDRQ 144
R + F+L + + R S+E + K + + +V ++LVG K DL RQ
Sbjct: 96 MRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHSRQ 149
>pdb|4DJT|A Chain A, Crystal Structure Of A Nuclear Gtp-Binding Protein From
Encephalitozoon Cuniculi Bound To Gdp-Mg2+
pdb|4DJT|B Chain B, Crystal Structure Of A Nuclear Gtp-Binding Protein From
Encephalitozoon Cuniculi Bound To Gdp-Mg2+
Length = 218
Score = 58.5 bits (140), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 42/124 (33%), Positives = 61/124 (49%), Gaps = 6/124 (4%)
Query: 24 KCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFD-NFSANVMVD-GRTVNLGLWDTAGQE 81
K + DG VGKT + F +Y TV N + D G + +WDTAGQE
Sbjct: 13 KICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQE 72
Query: 82 DYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRH-YAPSVPIVLVGTKLDLR 140
L+ + Y GA IL F + SR + +N++ +WV E + PIV+ K+D+
Sbjct: 73 KKAVLKDVYYIGASGAILFFDVTSRITCQNLA--RWVKEFQAVVGNEAPIVVCANKIDI- 129
Query: 141 KDRQ 144
K+RQ
Sbjct: 130 KNRQ 133
>pdb|3T5G|A Chain A, Structure Of Fully Modified Farnesylated Rheb In Complex
With Pde6d
Length = 181
Score = 57.4 bits (137), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 41/115 (35%), Positives = 64/115 (55%), Gaps = 6/115 (5%)
Query: 32 AVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRLRPLSY 91
+VGK+ L I + F Y PT+ + F+ + V+G+ +L L DTAGQ++Y+ + P +Y
Sbjct: 16 SVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQDEYS-IFPQTY 74
Query: 92 R-GADVFILAFSLISRPSYENISKKKWVPELRHYAPSV--PIVLVGTKLDLRKDR 143
+ +IL +S+ S S+E I K +L V PI+LVG K DL +R
Sbjct: 75 SIDINGYILVYSVTSIKSFEVI--KVIHGKLLDMVGKVQIPIMLVGNKKDLHMER 127
>pdb|1XTQ|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With Gdp
pdb|1XTR|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With
Gppnhp
pdb|1XTS|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With Gtp
Length = 177
Score = 57.4 bits (137), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 42/116 (36%), Positives = 65/116 (56%), Gaps = 8/116 (6%)
Query: 32 AVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRLRPLSY 91
+VGK+ L I + F Y PT+ + F+ + V+G+ +L L DTAGQ++Y+ + P +Y
Sbjct: 16 SVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQDEYS-IFPQTY 74
Query: 92 RGADV--FILAFSLISRPSYENISKKKWVPELRHYAPSV--PIVLVGTKLDLRKDR 143
D+ +IL +S+ S S+E I K +L V PI+LVG K DL +R
Sbjct: 75 -SIDINGYILVYSVTSIKSFEVI--KVIHGKLLDMVGKVQIPIMLVGNKKDLHMER 127
>pdb|2L0X|A Chain A, Solution Structure Of The 21 Kda Gtpase Rheb Bound To Gdp
Length = 169
Score = 57.4 bits (137), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 42/116 (36%), Positives = 65/116 (56%), Gaps = 8/116 (6%)
Query: 32 AVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRLRPLSY 91
+VGK+ L I + F Y PT+ + F+ + V+G+ +L L DTAGQ++Y+ + P +Y
Sbjct: 11 SVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQDEYS-IFPQTY 69
Query: 92 RGADV--FILAFSLISRPSYENISKKKWVPELRHYAPSV--PIVLVGTKLDLRKDR 143
D+ +IL +S+ S S+E I K +L V PI+LVG K DL +R
Sbjct: 70 -SIDINGYILVYSVTSIKSFEVI--KVIHGKLLDMVGKVQIPIMLVGNKKDLHMER 122
>pdb|3SEA|A Chain A, Structure Of Rheb-Y35a Mutant In Gdp- And Gmppnp-Bound
Forms
pdb|3SEA|B Chain B, Structure Of Rheb-Y35a Mutant In Gdp- And Gmppnp-Bound
Forms
Length = 167
Score = 54.3 bits (129), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 41/116 (35%), Positives = 64/116 (55%), Gaps = 8/116 (6%)
Query: 32 AVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRLRPLSY 91
+VGK+ L I + F PT+ + F+ + V+G+ +L L DTAGQ++Y+ + P +Y
Sbjct: 14 SVGKSSLTIQFVEGQFVDSADPTIENTFTKLITVNGQEYHLQLVDTAGQDEYS-IFPQTY 72
Query: 92 RGADV--FILAFSLISRPSYENISKKKWVPELRHYAPSV--PIVLVGTKLDLRKDR 143
D+ +IL +S+ S S+E I K +L V PI+LVG K DL +R
Sbjct: 73 -SIDINGYILVYSVTSIKSFEVI--KVIHGKLLDMVGKVQIPIMLVGNKKDLHMER 125
>pdb|2HXS|A Chain A, Crystal Structure Of Rab28a Gtpase In The Inactive
(Gdp-3'p- Bound) Form
pdb|3E5H|A Chain A, Crystal Structure Of Rab28 Gtpase In The Active
(Gppnhp-Bound) Form
Length = 178
Score = 53.1 bits (126), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 39/127 (30%), Positives = 61/127 (48%), Gaps = 8/127 (6%)
Query: 23 IKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTV-FDNFSANVMVDGR-TVNLGLWDTAGQ 80
+K V + DGA GKT L + TF Y T+ D F + + G V L +WD GQ
Sbjct: 7 LKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQ 66
Query: 81 EDYNRLRPLSYRGADVFILAFSLISRPSYENISKKKW---VPELRHYAPSVPIV-LVGTK 136
++ GA +L + + + S+EN+ + W V ++ + + P+V LVG K
Sbjct: 67 TIGGKMLDKYIYGAQGVLLVYDITNYQSFENL--EDWYTVVKKVSEESETQPLVALVGNK 124
Query: 137 LDLRKDR 143
+DL R
Sbjct: 125 IDLEHMR 131
>pdb|2CJW|B Chain B, Crystal Structure Of The Small Gtpase Gem (Gemdndcam) In
Complex To Mg.Gdp
Length = 192
Score = 52.0 bits (123), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/139 (23%), Positives = 64/139 (46%), Gaps = 7/139 (5%)
Query: 22 FIKCVTVRDGAVGKTCLLISYTG--NTFPTDYVPTVFDNFSANVMVDGRTVN---LGLWD 76
+ + V + + VGK+ L + G ++ +D D + +MVDG + L +W+
Sbjct: 6 YYRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMWE 65
Query: 77 TAGQEDYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTK 136
G+ ++ L + D +++ +S+ R S+E S+ + +PI+LVG K
Sbjct: 66 NKGENEW--LHDHXMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNK 123
Query: 137 LDLRKDRQFHLDYPGAYTI 155
DL + R+ + A +
Sbjct: 124 SDLVRXREVSVSEGRAXAV 142
>pdb|2CJW|A Chain A, Crystal Structure Of The Small Gtpase Gem (Gemdndcam) In
Complex To Mg.Gdp
Length = 192
Score = 51.6 bits (122), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/139 (23%), Positives = 64/139 (46%), Gaps = 7/139 (5%)
Query: 22 FIKCVTVRDGAVGKTCLLISYTG--NTFPTDYVPTVFDNFSANVMVDGRTVN---LGLWD 76
+ + V + + VGK+ L + G ++ +D D + +MVDG + L +W+
Sbjct: 6 YYRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMWE 65
Query: 77 TAGQEDYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTK 136
G+ ++ L + D +++ +S+ R S+E S+ + +PI+LVG K
Sbjct: 66 NKGENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNK 123
Query: 137 LDLRKDRQFHLDYPGAYTI 155
DL + R+ + A +
Sbjct: 124 SDLVRXREVSVSEGRAXAV 142
>pdb|2NZJ|A Chain A, The Crystal Structure Of Rem1 In Complex With Gdp
pdb|2NZJ|B Chain B, The Crystal Structure Of Rem1 In Complex With Gdp
pdb|2NZJ|C Chain C, The Crystal Structure Of Rem1 In Complex With Gdp
pdb|2NZJ|D Chain D, The Crystal Structure Of Rem1 In Complex With Gdp
Length = 175
Score = 51.2 bits (121), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 62/134 (46%), Gaps = 2/134 (1%)
Query: 24 KCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDT--AGQE 81
+ V + D VGKT L + G + D + + VDG L + DT A +
Sbjct: 6 RVVLLGDPGVGKTSLASLFAGKQERDLHEQLGEDVYERTLTVDGEDTTLVVVDTWEAEKL 65
Query: 82 DYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRK 141
D + + +G +++ +S+ R S+E+ S+ + H A VPI+LVG K DL +
Sbjct: 66 DKSWSQESCLQGGSAYVIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKADLAR 125
Query: 142 DRQFHLDYPGAYTI 155
R+ ++ A +
Sbjct: 126 CREVSVEEGRACAV 139
>pdb|3CLV|A Chain A, Crystal Structure Of Rab5a From Plasmodium Falciparum,
Pfb0500c
Length = 208
Score = 50.4 bits (119), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 43/79 (54%), Gaps = 6/79 (7%)
Query: 70 VNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVP 129
+ +WDTAGQE Y + PL YRGA I+ F + + + + K WV +L+ + +
Sbjct: 93 IKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLD--RAKTWVNQLK-ISSNYI 149
Query: 130 IVLVGTKLDLRKDRQFHLD 148
I+LV K+D K F +D
Sbjct: 150 IILVANKIDKNK---FQVD 165
>pdb|2HT6|A Chain A, Crystal Structure Of Human Gem G-Domain Bound To Gdp
pdb|2HT6|B Chain B, Crystal Structure Of Human Gem G-Domain Bound To Gdp
Length = 174
Score = 50.4 bits (119), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 32/139 (23%), Positives = 64/139 (46%), Gaps = 7/139 (5%)
Query: 22 FIKCVTVRDGAVGKTCLLISYTG--NTFPTDYVPTVFDNFSANVMVDGRTVN---LGLWD 76
+ + V + + VGK+ L + G ++ +D D + +MVDG + L +W+
Sbjct: 6 YYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWE 65
Query: 77 TAGQEDYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTK 136
G+ ++ L + D +++ +S+ R S+E S+ + +PI+LVG K
Sbjct: 66 NKGENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNK 123
Query: 137 LDLRKDRQFHLDYPGAYTI 155
DL + R+ + A +
Sbjct: 124 SDLVRCREVSVSEGRACAV 142
>pdb|2G3Y|A Chain A, Crystal Structure Of The Human Small Gtpase Gem
Length = 211
Score = 50.4 bits (119), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 32/139 (23%), Positives = 64/139 (46%), Gaps = 7/139 (5%)
Query: 22 FIKCVTVRDGAVGKTCLLISYTG--NTFPTDYVPTVFDNFSANVMVDGRTVN---LGLWD 76
+ + V + + VGK+ L + G ++ +D D + +MVDG + L +W+
Sbjct: 37 YYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWE 96
Query: 77 TAGQEDYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTK 136
G+ ++ L + D +++ +S+ R S+E S+ + +PI+LVG K
Sbjct: 97 NKGENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNK 154
Query: 137 LDLRKDRQFHLDYPGAYTI 155
DL + R+ + A +
Sbjct: 155 SDLVRCREVSVSEGRACAV 173
>pdb|3CBQ|A Chain A, Crystal Structure Of The Human Rem2 Gtpase With Bound Gdp
Length = 195
Score = 48.5 bits (114), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 37/131 (28%), Positives = 62/131 (47%), Gaps = 6/131 (4%)
Query: 22 FIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTV-FDNFSANVMVDGRTVNLGLWDTAGQ 80
K + V + VGK+ L ++ G + + P D + +MVD V L ++D Q
Sbjct: 23 IFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQ 82
Query: 81 EDYNR-LRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAP--SVPIVLVGTKL 137
D LR + D F++ FS+ R S+ + + + LR P +P++LVG K
Sbjct: 83 GDAGGWLRDHCLQTGDAFLIVFSVTDRRSFSKVPET--LLRLRAGRPHHDLPVILVGNKS 140
Query: 138 DLRKDRQFHLD 148
DL + R+ L+
Sbjct: 141 DLARSREVSLE 151
>pdb|3Q85|A Chain A, Crystal Structure Of Rem2 G-Domain -Gtp Analog Complex
pdb|3Q85|B Chain B, Crystal Structure Of Rem2 G-Domain -Gtp Analog Complex
Length = 169
Score = 45.1 bits (105), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/131 (27%), Positives = 62/131 (47%), Gaps = 10/131 (7%)
Query: 24 KCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVF---DNFSANVMVDGRTVNLGLWDTAGQ 80
K + V + VGK+ L ++ G D+ + D + +MVD V L ++D Q
Sbjct: 4 KVMLVGESGVGKSTLAGTFGG--LQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQ 61
Query: 81 EDYNR-LRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPS--VPIVLVGTKL 137
D L+ + D F++ FS+ R S+ + + + LR P +P++LVG K
Sbjct: 62 GDAGGWLQDHCLQTGDAFLIVFSVTDRRSFSKVPET--LLRLRAGRPHHDLPVILVGNKS 119
Query: 138 DLRKDRQFHLD 148
DL + R+ L+
Sbjct: 120 DLARSREVSLE 130
>pdb|4AII|A Chain A, Crystal Structure Of The Rat Rem2 Gtpase - G Domain Bound
To Gdp
pdb|4AII|B Chain B, Crystal Structure Of The Rat Rem2 Gtpase - G Domain Bound
To Gdp
Length = 180
Score = 43.5 bits (101), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 34/129 (26%), Positives = 61/129 (47%), Gaps = 6/129 (4%)
Query: 24 KCVTVRDGAVGKTCLLISYTGNTFPTDY-VPTVFDNFSANVMVDGRTVNLGLWDTAGQED 82
K + + + VGK+ L ++ G + + D + +MVD V L ++D Q D
Sbjct: 14 KVMLLGESGVGKSTLAGTFGGLQGDNAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQGD 73
Query: 83 YNR-LRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAP--SVPIVLVGTKLDL 139
L+ + D F++ FS+ R S+ + + + LR P +P++LVG K DL
Sbjct: 74 AGGWLQDHCLQTGDAFLIVFSVTDRRSFSKVPET--LLRLRAGRPHHDLPVILVGNKSDL 131
Query: 140 RKDRQFHLD 148
+ R+ L+
Sbjct: 132 ARSREVSLE 140
>pdb|3D6T|B Chain B, Structure Of The Roc Domain From The Parkinson's
Disease-Associated Leucine-Rich Repeat Kinase 2 Reveals
A Dimeric Gtpase
Length = 171
Score = 43.1 bits (100), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 41/77 (53%), Gaps = 1/77 (1%)
Query: 68 RTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPS 127
R + L +WD AG+E++ P + LA +S+ E + K W+ ++ A S
Sbjct: 52 RDLVLNVWDFAGREEFYSTHP-HFXTQRALYLAVYDLSKGQAEVDAXKPWLFNIKARASS 110
Query: 128 VPIVLVGTKLDLRKDRQ 144
P++LVGT LD+ ++Q
Sbjct: 111 SPVILVGTHLDVSDEKQ 127
>pdb|2ZEJ|A Chain A, Structure Of The Roc Domain From The Parkinson's
Disease-associated Leucine-rich Repeat Kinase 2 Reveals
A Dimeric Gtpase
pdb|2ZEJ|B Chain B, Structure Of The Roc Domain From The Parkinson's
Disease-associated Leucine-rich Repeat Kinase 2 Reveals
A Dimeric Gtpase
Length = 184
Score = 43.1 bits (100), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 41/77 (53%), Gaps = 1/77 (1%)
Query: 68 RTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPS 127
R + L +WD AG+E++ P + LA +S+ E + K W+ ++ A S
Sbjct: 54 RDLVLNVWDFAGREEFYSTHP-HFXTQRALYLAVYDLSKGQAEVDAXKPWLFNIKARASS 112
Query: 128 VPIVLVGTKLDLRKDRQ 144
P++LVGT LD+ ++Q
Sbjct: 113 SPVILVGTHLDVSDEKQ 129
>pdb|2DPX|A Chain A, Crystal Structure Of Human Rad Gtpase
pdb|2DPX|B Chain B, Crystal Structure Of Human Rad Gtpase
Length = 174
Score = 41.2 bits (95), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/124 (23%), Positives = 53/124 (42%), Gaps = 1/124 (0%)
Query: 32 AVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRLRPLSY 91
VGK+ L + G + +++VDG +L ++D Q+ L
Sbjct: 17 GVGKSALARIF-GGVEDGPEAEAAGHTYDRSIVVDGEEASLMVYDIWEQDGGRWLPGHCM 75
Query: 92 RGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKDRQFHLDYPG 151
D +++ +S+ + S+E S+ + VPI+LVG K DL + R+ +D
Sbjct: 76 AMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEGR 135
Query: 152 AYTI 155
A +
Sbjct: 136 ACAV 139
>pdb|2GJS|A Chain A, The Crystal Structure Of Human Rrad In Complex With Gdp
pdb|2GJS|B Chain B, The Crystal Structure Of Human Rrad In Complex With Gdp
Length = 176
Score = 41.2 bits (95), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/124 (23%), Positives = 53/124 (42%), Gaps = 1/124 (0%)
Query: 32 AVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRLRPLSY 91
VGK+ L + G + +++VDG +L ++D Q+ L
Sbjct: 17 GVGKSALARIF-GGVEDGPEAEAAGHTYDRSIVVDGEEASLMVYDIWEQDGGRWLPGHCM 75
Query: 92 RGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKDRQFHLDYPG 151
D +++ +S+ + S+E S+ + VPI+LVG K DL + R+ +D
Sbjct: 76 AMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEGR 135
Query: 152 AYTI 155
A +
Sbjct: 136 ACAV 139
>pdb|3Q72|A Chain A, Crystal Structure Of Rad G-Domain-Gtp Analog Complex
pdb|3Q72|B Chain B, Crystal Structure Of Rad G-Domain-Gtp Analog Complex
pdb|3Q7P|A Chain A, Crystal Structure Of Rad G-Domain-Gtp Analog Complex
pdb|3Q7P|B Chain B, Crystal Structure Of Rad G-Domain-Gtp Analog Complex
pdb|3Q7Q|A Chain A, Crystal Structure Of Rad G-Domain Q148a-Gtp Analog Complex
pdb|3Q7Q|B Chain B, Crystal Structure Of Rad G-Domain Q148a-Gtp Analog Complex
Length = 166
Score = 41.2 bits (95), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/98 (24%), Positives = 46/98 (46%)
Query: 58 NFSANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISRPSYENISKKKW 117
+ +++VDG +L ++D Q+ L D +++ +S+ + S+E S+ +
Sbjct: 37 TYDRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRV 96
Query: 118 VPELRHYAPSVPIVLVGTKLDLRKDRQFHLDYPGAYTI 155
VPI+LVG K DL + R+ +D A +
Sbjct: 97 QLRRARQTDDVPIILVGNKSDLVRSREVSVDEGRACAV 134
>pdb|3C5C|A Chain A, Crystal Structure Of Human Ras-Like, Family 12 Protein In
Complex With Gdp
pdb|3C5C|B Chain B, Crystal Structure Of Human Ras-Like, Family 12 Protein In
Complex With Gdp
pdb|3C5C|C Chain C, Crystal Structure Of Human Ras-Like, Family 12 Protein In
Complex With Gdp
pdb|3C5C|D Chain D, Crystal Structure Of Human Ras-Like, Family 12 Protein In
Complex With Gdp
Length = 187
Score = 40.4 bits (93), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 56/117 (47%), Gaps = 2/117 (1%)
Query: 29 RDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQED-YNRLR 87
R GA GK+ L + + F ++Y P + D +S+ VD + V+L + DTA + N R
Sbjct: 29 RRGA-GKSALTVKFLTKRFISEYDPNLEDTYSSEETVDHQPVHLRVMDTADLDTPRNCER 87
Query: 88 PLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKDRQ 144
L++ A + + + + + + S+P +L+G KLD+ + RQ
Sbjct: 88 YLNWAHAFLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMAQYRQ 144
>pdb|2YC2|C Chain C, Intraflagellar Transport Complex 25-27 From Chlamydomonas
pdb|2YC2|D Chain D, Intraflagellar Transport Complex 25-27 From Chlamydomonas
pdb|2YC4|C Chain C, Intraflagellar Transport Complex 25-27 From Chlamydomonas
pdb|2YC4|D Chain D, Intraflagellar Transport Complex 25-27 From Chlamydomonas
Length = 208
Score = 40.0 bits (92), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 45/135 (33%), Positives = 59/135 (43%), Gaps = 12/135 (8%)
Query: 24 KCVTVRDGAVGKTCLLISYT--GNTFPTDYVPTV-FDNFSANVMVDGRTVN--LGLWDTA 78
K V + VGK+ L+ +T G+ F DY T + A V + TV+ L L DTA
Sbjct: 22 KVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTA 81
Query: 79 GQEDYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPS----VPIVLVG 134
G + Y + G IL F + S S+E S K W L+ P + VLV
Sbjct: 82 GSDLYKEQISQYWNGVYYAILVFDVSSMESFE--SCKAWFELLKSARPDRERPLRAVLVA 139
Query: 135 TKLDLRKDR-QFHLD 148
K DL R Q LD
Sbjct: 140 NKTDLPPQRHQVRLD 154
>pdb|3DPU|A Chain A, Roccor Domain Tandem Of Rab Family Protein (Roco)
pdb|3DPU|B Chain B, Roccor Domain Tandem Of Rab Family Protein (Roco)
Length = 535
Score = 34.3 bits (77), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 32/129 (24%), Positives = 46/129 (35%), Gaps = 22/129 (17%)
Query: 23 IKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGL-------- 74
IK + DG GKT LL G TF P NV+ GL
Sbjct: 42 IKVHLIGDGMAGKTSLLKQLIGETFD----PKESQTHGLNVVTKQAPNIKGLENDDELKE 97
Query: 75 -----WDTAGQEDYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVP 129
WD GQE + + V++L S + +K W+ + Y P
Sbjct: 98 CLFHFWDFGGQEIMHASHQFFMTRSSVYMLLLD-----SRTDSNKHYWLRHIEKYGGKSP 152
Query: 130 IVLVGTKLD 138
+++V K+D
Sbjct: 153 VIVVMNKID 161
>pdb|2AL7|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10c
Length = 186
Score = 34.3 bits (77), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 28/113 (24%), Positives = 46/113 (40%), Gaps = 17/113 (15%)
Query: 34 GKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRG 93
GKT + F D +PTV F+ + G V + +WD GQ + + RG
Sbjct: 34 GKTTFVNVIASGQFSEDMIPTV--GFNMRKVTKG-NVTIKIWDIGGQPRFRSMWERYCRG 90
Query: 94 ADVFILAFSLISRPSYE-------NISKKKWVPELRHYAPSVPIVLVGTKLDL 139
+ + R E N+ K P+L+ +P++++G K DL
Sbjct: 91 VNAIVYMIDAADREKIEASRNELHNLLDK---PQLQ----GIPVLVLGNKRDL 136
>pdb|4ARZ|A Chain A, The Crystal Structure Of Gtr1p-Gtr2p Complexed With
Gtp-Gdp
Length = 310
Score = 31.6 bits (70), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 25/100 (25%), Positives = 45/100 (45%), Gaps = 10/100 (10%)
Query: 69 TVNLGLWDTAGQ----EDY-NRLRPLSYRGADVFILAFSLISRPSYENISK-KKWVPELR 122
+ L LWD GQ E+Y + + ++ V I F + S ++I K + +LR
Sbjct: 54 NMTLNLWDCGGQDVFMENYFTKQKDHIFQMVQVLIHVFDVESTEVLKDIEIFAKALKQLR 113
Query: 123 HYAPSVPIVLVGTKLDL----RKDRQFHLDYPGAYTISTE 158
Y+P I ++ K+DL +++ F + S+E
Sbjct: 114 KYSPDAKIFVLLHKMDLVQLDKREELFQIMMKNLSETSSE 153
>pdb|4DN1|A Chain A, Crystal Structure Of An Enolase (Mandelate Racemase
Subgroup Member) From Agrobacterium Tumefaciens (Target
Efi-502088) With Bound Mg And Formate
pdb|4DN1|B Chain B, Crystal Structure Of An Enolase (Mandelate Racemase
Subgroup Member) From Agrobacterium Tumefaciens (Target
Efi-502088) With Bound Mg And Formate
Length = 408
Score = 27.3 bits (59), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 16/29 (55%)
Query: 69 TVNLGLWDTAGQEDYNRLRPLSYRGADVF 97
+++ LWD AGQE +R L G D F
Sbjct: 145 ALDIALWDIAGQEAGKSIRDLLGGGVDSF 173
>pdb|2NQL|A Chain A, Crystal Structure Of A Member Of The Enolase Superfamily
From Agrobacterium Tumefaciens
pdb|2NQL|B Chain B, Crystal Structure Of A Member Of The Enolase Superfamily
From Agrobacterium Tumefaciens
Length = 388
Score = 27.3 bits (59), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 16/29 (55%)
Query: 69 TVNLGLWDTAGQEDYNRLRPLSYRGADVF 97
+++ LWD AGQE +R L G D F
Sbjct: 125 ALDIALWDIAGQEAGKSIRDLLGGGVDSF 153
>pdb|1IQR|A Chain A, Crystal Structure Of Dna Photolyase From Thermus
Thermophilus
pdb|1IQU|A Chain A, Crystal Structure Of Photolyase-Thymine Complex
pdb|2J07|A Chain A, Thermus Dna Photolyase With 8-Hdf Antenna Chromophore
pdb|2J08|A Chain A, Thermus Dna Photolyase With 8-Iod-Riboflavin Antenna
Chromophore
pdb|2J09|A Chain A, Thermus Dna Photolyase With Fmn Antenna Chromophore
Length = 420
Score = 26.9 bits (58), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 32/73 (43%), Gaps = 11/73 (15%)
Query: 62 NVMVDG-RTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLI--SRPSYENISKKKWV 118
++++DG R VNL W AG L A F + ++ R E K+W
Sbjct: 337 HLLLDGDRAVNLQGWQWAGG--------LGVDAAPYFRVFNPVLQGERHDPEGRWLKRWA 388
Query: 119 PELRHYAPSVPIV 131
PE YAP P+V
Sbjct: 389 PEYPSYAPKDPVV 401
>pdb|4EPL|A Chain A, Crystal Structure Of Arabidopsis Thaliana Gh3.11 (Jar1) In
Complex With Ja-Ile
Length = 581
Score = 26.6 bits (57), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 10/19 (52%), Positives = 15/19 (78%)
Query: 113 SKKKWVPELRHYAPSVPIV 131
S + +VP+LRHYA +P+V
Sbjct: 314 SMEPYVPKLRHYAGDLPLV 332
>pdb|3LRP|A Chain A, Crystal Structure Of Plasmodium Falciparum
Adp-Ribosylation Factor 1
Length = 181
Score = 26.6 bits (57), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 34/70 (48%), Gaps = 9/70 (12%)
Query: 21 KFIKCVTVRDGAVGKTCLLISYT-GNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAG 79
K ++ + V A GKT +L G T +PT+ N V+ R ++ +WD G
Sbjct: 16 KDVRILMVGLDAAGKTTILYKVKLGEVVTT--IPTIGFNVET---VEFRNISFTVWDVGG 70
Query: 80 QEDYNRLRPL 89
Q+ ++RPL
Sbjct: 71 QD---KIRPL 77
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.139 0.427
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,543,682
Number of Sequences: 62578
Number of extensions: 185452
Number of successful extensions: 983
Number of sequences better than 100.0: 302
Number of HSP's better than 100.0 without gapping: 291
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 388
Number of HSP's gapped (non-prelim): 303
length of query: 159
length of database: 14,973,337
effective HSP length: 91
effective length of query: 68
effective length of database: 9,278,739
effective search space: 630954252
effective search space used: 630954252
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 47 (22.7 bits)