Query 044772
Match_columns 159
No_of_seqs 103 out of 1165
Neff 9.5
Searched_HMMs 46136
Date Fri Mar 29 06:37:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044772.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/044772hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0084 GTPase Rab1/YPT1, smal 100.0 6.8E-39 1.5E-43 222.6 10.6 137 18-156 5-143 (205)
2 KOG0098 GTPase Rab2, small G p 100.0 6.6E-36 1.4E-40 205.9 9.5 136 19-156 3-140 (216)
3 KOG0094 GTPase Rab6/YPT6/Ryh1, 100.0 5.4E-34 1.2E-38 197.9 10.7 135 18-154 18-155 (221)
4 KOG0092 GTPase Rab5/YPT51 and 100.0 5.5E-34 1.2E-38 197.4 10.4 136 20-157 3-140 (200)
5 KOG0078 GTP-binding protein SE 100.0 8.9E-34 1.9E-38 199.4 10.1 137 18-156 8-146 (207)
6 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 100.0 8.7E-33 1.9E-37 196.1 12.8 135 20-155 3-149 (182)
7 KOG0079 GTP-binding protein H- 100.0 5.9E-34 1.3E-38 189.8 6.3 135 21-157 7-142 (198)
8 cd04133 Rop_like Rop subfamily 100.0 1.8E-32 3.9E-37 193.5 13.2 131 23-154 2-142 (176)
9 cd04131 Rnd Rnd subfamily. Th 100.0 2.3E-32 5.1E-37 193.3 13.0 132 23-155 2-145 (178)
10 cd04121 Rab40 Rab40 subfamily. 100.0 4.6E-32 1E-36 193.4 12.3 133 20-154 4-137 (189)
11 cd01875 RhoG RhoG subfamily. 100.0 6.1E-32 1.3E-36 193.1 12.8 121 22-143 3-123 (191)
12 KOG0087 GTPase Rab11/YPT3, sma 100.0 3.7E-32 8.1E-37 190.8 11.4 139 16-156 8-148 (222)
13 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 100.0 6.7E-32 1.5E-36 197.6 13.1 136 19-155 10-157 (232)
14 KOG0080 GTPase Rab18, small G 100.0 2.7E-32 5.9E-37 184.1 9.7 137 18-156 7-146 (209)
15 cd04120 Rab12 Rab12 subfamily. 100.0 6.7E-32 1.5E-36 194.3 11.8 130 23-154 1-132 (202)
16 cd01874 Cdc42 Cdc42 subfamily. 100.0 2.4E-31 5.1E-36 187.6 12.9 119 23-142 2-120 (175)
17 KOG0093 GTPase Rab3, small G p 100.0 3.9E-31 8.4E-36 176.1 10.6 137 16-154 15-153 (193)
18 KOG0086 GTPase Rab4, small G p 100.0 1.5E-31 3.2E-36 179.4 7.3 136 18-155 5-142 (214)
19 cd04141 Rit_Rin_Ric Rit/Rin/Ri 100.0 8.3E-31 1.8E-35 184.4 11.4 131 22-154 2-134 (172)
20 KOG0095 GTPase Rab30, small G 100.0 3.8E-31 8.2E-36 176.8 8.6 138 18-157 3-142 (213)
21 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 100.0 2.7E-30 6E-35 188.2 13.2 119 23-142 2-120 (222)
22 KOG0394 Ras-related GTPase [Ge 100.0 6.1E-31 1.3E-35 181.0 8.8 134 19-154 6-147 (210)
23 cd01871 Rac1_like Rac1-like su 100.0 3.6E-30 7.8E-35 181.4 12.8 119 23-142 2-120 (174)
24 cd04122 Rab14 Rab14 subfamily. 100.0 4.5E-30 9.8E-35 179.2 11.6 131 22-154 2-134 (166)
25 cd04134 Rho3 Rho3 subfamily. 100.0 1.3E-29 2.7E-34 180.8 12.9 121 23-144 1-121 (189)
26 cd04136 Rap_like Rap-like subf 100.0 8.4E-30 1.8E-34 176.7 11.5 128 23-152 2-131 (163)
27 cd04117 Rab15 Rab15 subfamily. 100.0 1.5E-29 3.2E-34 176.0 11.9 130 23-154 1-132 (161)
28 cd01867 Rab8_Rab10_Rab13_like 100.0 1.6E-29 3.5E-34 176.6 11.5 131 21-153 2-134 (167)
29 PF00071 Ras: Ras family; Int 100.0 8.6E-30 1.9E-34 176.8 9.8 129 24-154 1-131 (162)
30 cd04107 Rab32_Rab38 Rab38/Rab3 100.0 2.3E-29 5E-34 181.0 12.1 130 23-154 1-137 (201)
31 cd04176 Rap2 Rap2 subgroup. T 100.0 2.3E-29 5E-34 174.8 11.4 129 22-152 1-131 (163)
32 cd04175 Rap1 Rap1 subgroup. T 100.0 1.8E-29 4E-34 175.6 11.0 129 22-152 1-131 (164)
33 PTZ00369 Ras-like protein; Pro 100.0 3.2E-29 6.9E-34 178.7 11.8 130 21-152 4-135 (189)
34 smart00174 RHO Rho (Ras homolo 100.0 4.3E-29 9.2E-34 175.2 12.1 118 25-143 1-118 (174)
35 cd04130 Wrch_1 Wrch-1 subfamil 100.0 6.4E-29 1.4E-33 174.6 13.0 131 23-154 1-143 (173)
36 cd04102 RabL3 RabL3 (Rab-like3 100.0 6.3E-29 1.4E-33 178.7 13.1 124 23-148 1-150 (202)
37 cd01865 Rab3 Rab3 subfamily. 100.0 6E-29 1.3E-33 173.4 12.1 127 23-151 2-130 (165)
38 PLN00023 GTP-binding protein; 100.0 7.6E-29 1.7E-33 187.3 12.9 138 16-155 15-185 (334)
39 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 100.0 7.2E-29 1.5E-33 172.9 11.7 130 22-153 2-133 (166)
40 KOG0088 GTPase Rab21, small G 100.0 4E-30 8.7E-35 173.3 5.0 140 15-156 6-147 (218)
41 cd04106 Rab23_lke Rab23-like s 100.0 6.3E-29 1.4E-33 172.3 11.3 129 23-153 1-132 (162)
42 cd04140 ARHI_like ARHI subfami 100.0 8.3E-29 1.8E-33 172.7 11.6 128 23-152 2-133 (165)
43 cd04144 Ras2 Ras2 subfamily. 100.0 3.6E-29 7.8E-34 178.5 9.9 128 24-153 1-132 (190)
44 cd04127 Rab27A Rab27a subfamil 100.0 7.8E-29 1.7E-33 174.9 11.4 132 21-154 3-147 (180)
45 cd04132 Rho4_like Rho4-like su 100.0 9.7E-29 2.1E-33 175.5 11.8 120 23-143 1-121 (187)
46 cd04110 Rab35 Rab35 subfamily. 100.0 1.4E-28 3E-33 176.8 12.4 130 21-152 5-135 (199)
47 cd04115 Rab33B_Rab33A Rab33B/R 100.0 1.2E-28 2.7E-33 172.7 11.8 131 22-154 2-136 (170)
48 cd01864 Rab19 Rab19 subfamily. 100.0 1.7E-28 3.8E-33 170.9 11.7 130 21-152 2-133 (165)
49 KOG0395 Ras-related GTPase [Ge 100.0 3.8E-29 8.2E-34 178.9 8.4 133 21-155 2-136 (196)
50 smart00173 RAS Ras subfamily o 100.0 1.2E-28 2.7E-33 171.2 10.8 128 23-152 1-130 (164)
51 cd04119 RJL RJL (RabJ-Like) su 100.0 1.5E-28 3.1E-33 170.9 11.0 129 23-153 1-136 (168)
52 cd04138 H_N_K_Ras_like H-Ras/N 100.0 2.1E-28 4.6E-33 169.2 11.4 123 22-147 1-125 (162)
53 PLN03071 GTP-binding nuclear p 100.0 7.6E-28 1.7E-32 175.4 14.8 120 20-141 11-131 (219)
54 cd04116 Rab9 Rab9 subfamily. 100.0 3.8E-28 8.3E-33 169.9 12.5 131 20-153 3-139 (170)
55 cd04128 Spg1 Spg1p. Spg1p (se 100.0 2.8E-28 6E-33 173.0 11.7 115 23-140 1-117 (182)
56 cd04145 M_R_Ras_like M-Ras/R-R 100.0 2.9E-28 6.3E-33 169.2 11.4 129 22-152 2-132 (164)
57 cd01868 Rab11_like Rab11-like. 100.0 3E-28 6.5E-33 169.5 11.4 130 22-153 3-134 (165)
58 cd04125 RabA_like RabA-like su 100.0 3.8E-28 8.1E-33 172.8 12.1 130 23-154 1-132 (188)
59 cd04135 Tc10 TC10 subfamily. 100.0 6.8E-28 1.5E-32 169.1 13.2 119 23-142 1-119 (174)
60 cd04109 Rab28 Rab28 subfamily. 100.0 3E-28 6.6E-33 176.9 11.4 130 23-154 1-136 (215)
61 cd04143 Rhes_like Rhes_like su 100.0 2.6E-28 5.6E-33 180.6 11.2 128 23-152 1-138 (247)
62 KOG0393 Ras-related small GTPa 100.0 1E-28 2.2E-33 174.3 8.4 138 20-158 2-142 (198)
63 PLN03110 Rab GTPase; Provision 100.0 5.2E-28 1.1E-32 175.9 12.4 134 19-154 9-144 (216)
64 KOG0091 GTPase Rab39, small G 100.0 2E-29 4.4E-34 170.6 4.5 133 21-155 7-144 (213)
65 cd04113 Rab4 Rab4 subfamily. 100.0 4.2E-28 9.1E-33 168.2 11.3 129 23-153 1-131 (161)
66 cd01873 RhoBTB RhoBTB subfamil 100.0 8.9E-28 1.9E-32 172.1 12.8 130 22-154 2-166 (195)
67 cd01866 Rab2 Rab2 subfamily. 100.0 6.4E-28 1.4E-32 168.8 11.8 132 21-154 3-136 (168)
68 cd04108 Rab36_Rab34 Rab34/Rab3 100.0 2E-27 4.4E-32 166.8 13.6 119 24-144 2-123 (170)
69 cd01892 Miro2 Miro2 subfamily. 100.0 1.6E-27 3.5E-32 167.1 13.1 126 20-148 2-129 (169)
70 cd04146 RERG_RasL11_like RERG/ 100.0 3.3E-28 7.2E-33 169.5 9.5 129 24-154 1-133 (165)
71 cd04111 Rab39 Rab39 subfamily. 100.0 8.4E-28 1.8E-32 174.2 11.5 131 22-154 2-136 (211)
72 cd04124 RabL2 RabL2 subfamily. 100.0 4.3E-27 9.4E-32 163.5 14.3 117 23-141 1-118 (161)
73 cd00877 Ran Ran (Ras-related n 100.0 5.7E-27 1.2E-31 163.8 14.7 116 23-140 1-117 (166)
74 cd04103 Centaurin_gamma Centau 100.0 1.3E-27 2.9E-32 166.0 11.2 124 23-154 1-128 (158)
75 PLN03108 Rab family protein; P 100.0 1.7E-27 3.7E-32 172.4 12.0 133 20-154 4-138 (210)
76 KOG0097 GTPase Rab14, small G 99.9 2.6E-28 5.7E-33 162.0 6.7 136 18-155 7-144 (215)
77 cd01870 RhoA_like RhoA-like su 99.9 3.5E-27 7.7E-32 165.6 12.8 119 23-142 2-120 (175)
78 cd04112 Rab26 Rab26 subfamily. 99.9 2E-27 4.3E-32 169.7 11.4 128 23-152 1-131 (191)
79 cd01861 Rab6 Rab6 subfamily. 99.9 2.4E-27 5.2E-32 164.2 11.4 128 23-152 1-130 (161)
80 cd04126 Rab20 Rab20 subfamily. 99.9 2E-27 4.2E-32 173.0 11.3 127 23-155 1-147 (220)
81 cd04177 RSR1 RSR1 subgroup. R 99.9 3.1E-27 6.7E-32 165.2 11.7 128 22-151 1-130 (168)
82 cd04118 Rab24 Rab24 subfamily. 99.9 4.5E-27 9.8E-32 167.8 12.7 117 23-141 1-119 (193)
83 cd04101 RabL4 RabL4 (Rab-like4 99.9 3.5E-27 7.7E-32 163.9 11.3 125 23-149 1-129 (164)
84 smart00175 RAB Rab subfamily o 99.9 4.5E-27 9.7E-32 163.1 11.3 129 23-153 1-131 (164)
85 cd04142 RRP22 RRP22 subfamily. 99.9 5.9E-27 1.3E-31 168.2 12.1 127 23-151 1-140 (198)
86 smart00176 RAN Ran (Ras-relate 99.9 8.7E-27 1.9E-31 167.5 12.7 116 28-146 1-117 (200)
87 cd01860 Rab5_related Rab5-rela 99.9 8E-27 1.7E-31 161.8 11.4 127 22-150 1-129 (163)
88 PLN03118 Rab family protein; P 99.9 1.2E-26 2.6E-31 168.0 12.8 133 18-152 10-145 (211)
89 cd04162 Arl9_Arfrp2_like Arl9/ 99.9 8.1E-27 1.8E-31 162.8 10.7 118 24-146 1-118 (164)
90 cd00157 Rho Rho (Ras homology) 99.9 6.1E-26 1.3E-30 158.5 14.6 121 23-144 1-121 (171)
91 cd04148 RGK RGK subfamily. Th 99.9 1.8E-26 4E-31 168.3 11.5 127 23-153 1-132 (221)
92 cd01862 Rab7 Rab7 subfamily. 99.9 2.4E-26 5.1E-31 160.7 11.4 125 23-149 1-131 (172)
93 cd04123 Rab21 Rab21 subfamily. 99.9 3.7E-26 8E-31 157.9 11.5 125 23-149 1-127 (162)
94 cd04129 Rho2 Rho2 subfamily. 99.9 6.6E-26 1.4E-30 161.3 12.6 118 23-141 2-119 (187)
95 cd01863 Rab18 Rab18 subfamily. 99.9 7.2E-26 1.6E-30 156.9 12.0 116 23-140 1-119 (161)
96 cd01893 Miro1 Miro1 subfamily. 99.9 2.3E-25 4.9E-30 155.6 13.1 121 23-145 1-121 (166)
97 cd00876 Ras Ras family. The R 99.9 6.2E-26 1.3E-30 156.5 10.0 129 24-154 1-131 (160)
98 cd04114 Rab30 Rab30 subfamily. 99.9 2.2E-25 4.9E-30 155.5 12.5 129 20-150 5-135 (169)
99 cd04139 RalA_RalB RalA/RalB su 99.9 1.2E-25 2.7E-30 155.7 11.1 122 23-146 1-124 (164)
100 cd00154 Rab Rab family. Rab G 99.9 1.5E-25 3.4E-30 153.6 11.0 128 23-152 1-130 (159)
101 KOG0081 GTPase Rab27, small G 99.9 5.7E-28 1.2E-32 163.1 -1.8 134 19-154 6-151 (219)
102 smart00177 ARF ARF-like small 99.9 4.2E-25 9E-30 155.7 10.9 116 21-142 12-129 (175)
103 cd04149 Arf6 Arf6 subfamily. 99.9 4E-25 8.7E-30 154.9 10.2 115 21-141 8-124 (168)
104 PTZ00132 GTP-binding nuclear p 99.9 2.5E-24 5.4E-29 156.3 14.6 122 18-141 5-127 (215)
105 cd04147 Ras_dva Ras-dva subfam 99.9 9.3E-25 2E-29 156.7 12.2 122 24-147 1-125 (198)
106 KOG0083 GTPase Rab26/Rab37, sm 99.9 3.1E-27 6.7E-32 155.4 -0.7 129 26-156 1-132 (192)
107 PLN00223 ADP-ribosylation fact 99.9 5.7E-25 1.2E-29 155.9 10.7 117 20-142 15-133 (181)
108 cd04137 RheB Rheb (Ras Homolog 99.9 5.3E-25 1.2E-29 155.3 10.3 124 23-148 2-127 (180)
109 cd04161 Arl2l1_Arl13_like Arl2 99.9 1.2E-24 2.6E-29 152.3 11.8 114 24-143 1-116 (167)
110 cd04150 Arf1_5_like Arf1-Arf5- 99.9 6.7E-25 1.5E-29 152.4 10.3 113 23-141 1-115 (159)
111 PF08477 Miro: Miro-like prote 99.9 1.6E-24 3.5E-29 143.3 10.8 115 24-138 1-119 (119)
112 cd04158 ARD1 ARD1 subfamily. 99.9 8E-25 1.7E-29 153.3 9.2 112 24-141 1-114 (169)
113 PTZ00133 ADP-ribosylation fact 99.9 1.8E-24 3.9E-29 153.5 10.7 116 20-141 15-132 (182)
114 cd04157 Arl6 Arl6 subfamily. 99.9 4.3E-24 9.4E-29 147.8 10.0 114 24-142 1-119 (162)
115 cd04154 Arl2 Arl2 subfamily. 99.9 1.2E-23 2.5E-28 147.8 11.9 118 19-142 11-130 (173)
116 cd04152 Arl4_Arl7 Arl4/Arl7 su 99.9 1.4E-23 3E-28 148.9 12.1 118 21-141 2-123 (183)
117 COG1100 GTPase SAR1 and relate 99.9 3E-23 6.5E-28 150.6 11.2 124 22-146 5-130 (219)
118 cd04156 ARLTS1 ARLTS1 subfamil 99.9 6E-23 1.3E-27 142.0 11.3 113 24-141 1-115 (160)
119 cd04153 Arl5_Arl8 Arl5/Arl8 su 99.9 4.9E-23 1.1E-27 144.9 10.6 115 21-141 14-130 (174)
120 KOG4252 GTP-binding protein [S 99.9 2.5E-25 5.4E-30 153.0 -1.1 135 17-153 15-150 (246)
121 cd04151 Arl1 Arl1 subfamily. 99.9 7.1E-23 1.5E-27 141.7 10.3 114 24-142 1-115 (158)
122 PF00025 Arf: ADP-ribosylation 99.9 9.1E-23 2E-27 143.9 9.4 118 19-142 11-130 (175)
123 smart00178 SAR Sar1p-like memb 99.9 1.5E-22 3.3E-27 143.8 10.6 116 20-141 15-132 (184)
124 cd00878 Arf_Arl Arf (ADP-ribos 99.9 1.7E-22 3.6E-27 139.6 10.4 114 24-143 1-116 (158)
125 cd04159 Arl10_like Arl10-like 99.9 3.1E-22 6.7E-27 137.3 11.5 115 24-143 1-117 (159)
126 cd00879 Sar1 Sar1 subfamily. 99.9 7.2E-22 1.6E-26 140.5 12.0 116 20-141 17-134 (190)
127 cd04160 Arfrp1 Arfrp1 subfamil 99.9 5.4E-22 1.2E-26 138.1 11.0 114 24-142 1-122 (167)
128 KOG0070 GTP-binding ADP-ribosy 99.9 4.6E-22 1E-26 137.6 7.7 124 16-144 11-135 (181)
129 KOG3883 Ras family small GTPas 99.9 1.1E-21 2.4E-26 131.8 9.2 134 20-155 7-146 (198)
130 KOG0073 GTP-binding ADP-ribosy 99.9 3.2E-21 7E-26 130.8 10.2 117 19-140 13-130 (185)
131 cd04105 SR_beta Signal recogni 99.9 5.5E-21 1.2E-25 137.8 10.7 118 24-143 2-125 (203)
132 TIGR00231 small_GTP small GTP- 99.8 1.9E-20 4.1E-25 127.8 12.0 120 22-142 1-123 (161)
133 cd04155 Arl3 Arl3 subfamily. 99.8 2.6E-20 5.6E-25 130.4 10.7 117 20-142 12-130 (173)
134 KOG0071 GTP-binding ADP-ribosy 99.8 3E-20 6.5E-25 123.2 9.1 121 20-145 15-136 (180)
135 cd01890 LepA LepA subfamily. 99.8 4.2E-20 9E-25 130.0 9.8 114 24-142 2-134 (179)
136 PTZ00099 rab6; Provisional 99.8 3.9E-20 8.4E-25 130.6 8.9 107 45-153 3-111 (176)
137 cd01898 Obg Obg subfamily. Th 99.8 1.2E-19 2.6E-24 126.6 9.8 118 24-145 2-132 (170)
138 cd01897 NOG NOG1 is a nucleola 99.8 2.7E-19 6E-24 124.6 11.6 120 23-146 1-132 (168)
139 cd01891 TypA_BipA TypA (tyrosi 99.8 1.4E-19 3E-24 129.5 8.9 117 22-143 2-133 (194)
140 TIGR02528 EutP ethanolamine ut 99.8 2.3E-20 5.1E-25 126.8 4.6 96 24-141 2-102 (142)
141 KOG0075 GTP-binding ADP-ribosy 99.8 2.3E-20 4.9E-25 124.7 4.3 117 21-141 19-136 (186)
142 cd00882 Ras_like_GTPase Ras-li 99.8 9E-19 2E-23 118.2 11.0 115 27-143 1-118 (157)
143 cd01878 HflX HflX subfamily. 99.8 6.6E-19 1.4E-23 126.7 10.2 121 20-145 39-171 (204)
144 KOG1673 Ras GTPases [General f 99.8 5.1E-19 1.1E-23 119.3 8.8 120 18-139 16-136 (205)
145 cd04171 SelB SelB subfamily. 99.8 1.1E-18 2.3E-23 120.7 10.2 110 24-142 2-119 (164)
146 cd01887 IF2_eIF5B IF2/eIF5B (i 99.8 1.3E-18 2.8E-23 121.0 10.5 113 24-141 2-116 (168)
147 KOG0096 GTPase Ran/TC4/GSP1 (n 99.8 2.6E-18 5.6E-23 119.3 9.9 120 20-141 8-128 (216)
148 TIGR00450 mnmE_trmE_thdF tRNA 99.8 5.4E-18 1.2E-22 134.6 12.9 115 20-142 201-325 (442)
149 TIGR03156 GTP_HflX GTP-binding 99.8 4E-18 8.6E-23 131.9 10.6 121 21-146 188-320 (351)
150 cd01879 FeoB Ferrous iron tran 99.8 5.7E-18 1.2E-22 116.5 10.3 111 27-146 1-120 (158)
151 PRK12299 obgE GTPase CgtA; Rev 99.8 4.1E-18 8.8E-23 131.0 9.2 120 24-146 160-290 (335)
152 PRK05291 trmE tRNA modificatio 99.7 9.5E-18 2.1E-22 133.7 10.9 116 21-145 214-339 (449)
153 KOG0074 GTP-binding ADP-ribosy 99.7 1.1E-17 2.3E-22 111.4 9.0 117 20-140 15-132 (185)
154 PRK04213 GTP-binding protein; 99.7 3.1E-18 6.7E-23 122.9 7.1 116 20-143 7-146 (201)
155 PRK03003 GTP-binding protein D 99.7 1.3E-17 2.9E-22 133.8 11.2 113 22-141 38-160 (472)
156 cd01881 Obg_like The Obg-like 99.7 8.7E-18 1.9E-22 117.5 9.0 117 27-146 1-139 (176)
157 cd04164 trmE TrmE (MnmE, ThdF, 99.7 3.7E-17 8E-22 112.1 11.8 113 23-144 2-124 (157)
158 cd01894 EngA1 EngA1 subfamily. 99.7 1.4E-17 3E-22 114.3 9.3 113 26-145 1-123 (157)
159 PRK15494 era GTPase Era; Provi 99.7 6E-17 1.3E-21 125.0 13.4 116 19-142 49-175 (339)
160 PRK03003 GTP-binding protein D 99.7 2.6E-17 5.6E-22 132.1 11.3 114 21-141 210-336 (472)
161 TIGR03598 GTPase_YsxC ribosome 99.7 3.1E-17 6.6E-22 115.9 9.8 117 17-141 13-143 (179)
162 PRK00093 GTP-binding protein D 99.7 3.9E-17 8.4E-22 129.9 10.9 112 23-141 2-123 (435)
163 KOG1707 Predicted Ras related/ 99.7 1.6E-17 3.5E-22 131.9 8.3 124 20-145 7-133 (625)
164 TIGR01393 lepA GTP-binding pro 99.7 4.5E-17 9.9E-22 133.5 10.9 116 21-141 2-136 (595)
165 cd00881 GTP_translation_factor 99.7 5.8E-17 1.2E-21 114.5 9.4 113 24-141 1-128 (189)
166 TIGR00436 era GTP-binding prot 99.7 7.2E-17 1.6E-21 121.1 10.0 111 24-142 2-122 (270)
167 cd04163 Era Era subfamily. Er 99.7 1.1E-16 2.4E-21 110.3 9.6 113 22-141 3-125 (168)
168 TIGR02729 Obg_CgtA Obg family 99.7 1.1E-16 2.4E-21 122.9 10.5 118 23-143 158-289 (329)
169 cd01895 EngA2 EngA2 subfamily. 99.7 1.7E-16 3.7E-21 110.3 9.9 115 22-143 2-129 (174)
170 TIGR03594 GTPase_EngA ribosome 99.7 4.1E-16 8.8E-21 123.8 13.3 114 20-140 170-296 (429)
171 TIGR00487 IF-2 translation ini 99.7 3.1E-16 6.8E-21 128.2 12.7 118 18-141 83-201 (587)
172 cd04167 Snu114p Snu114p subfam 99.7 7E-17 1.5E-21 117.2 7.9 112 24-140 2-136 (213)
173 TIGR03594 GTPase_EngA ribosome 99.7 2.2E-16 4.7E-21 125.4 10.6 113 24-143 1-123 (429)
174 KOG4423 GTP-binding protein-li 99.7 2E-19 4.2E-24 124.6 -5.9 121 19-141 22-149 (229)
175 PRK00454 engB GTP-binding prot 99.7 1.9E-16 4.2E-21 112.9 9.2 118 17-141 19-149 (196)
176 PRK11058 GTPase HflX; Provisio 99.7 2.1E-16 4.6E-21 125.0 10.3 116 23-142 198-324 (426)
177 PF02421 FeoB_N: Ferrous iron 99.7 1.2E-16 2.7E-21 110.0 6.9 117 23-148 1-126 (156)
178 cd04168 TetM_like Tet(M)-like 99.7 2.3E-16 5E-21 116.2 8.4 113 24-141 1-130 (237)
179 PF09439 SRPRB: Signal recogni 99.7 4.2E-17 9.2E-22 114.7 3.9 119 22-143 3-128 (181)
180 PRK05306 infB translation init 99.7 1.3E-15 2.7E-20 127.7 13.0 117 18-141 286-403 (787)
181 KOG0077 Vesicle coat complex C 99.7 1.5E-16 3.3E-21 108.4 6.0 118 21-143 19-137 (193)
182 cd01889 SelB_euk SelB subfamil 99.7 6E-16 1.3E-20 110.5 9.1 114 23-141 1-134 (192)
183 CHL00189 infB translation init 99.7 6.1E-16 1.3E-20 128.6 10.4 118 19-141 241-361 (742)
184 PRK12297 obgE GTPase CgtA; Rev 99.7 3.1E-15 6.7E-20 118.0 13.8 114 24-141 160-288 (424)
185 cd01850 CDC_Septin CDC/Septin. 99.7 3.8E-15 8.2E-20 112.0 13.4 116 21-141 3-157 (276)
186 cd04169 RF3 RF3 subfamily. Pe 99.7 1.2E-15 2.5E-20 114.3 10.6 116 22-142 2-138 (267)
187 PF04670 Gtr1_RagA: Gtr1/RagA 99.7 5.1E-16 1.1E-20 113.5 8.2 116 24-140 1-124 (232)
188 COG2229 Predicted GTPase [Gene 99.6 2E-15 4.2E-20 104.7 10.4 123 17-145 5-139 (187)
189 cd01885 EF2 EF2 (for archaea a 99.6 9.6E-16 2.1E-20 111.7 9.4 120 24-148 2-147 (222)
190 PRK09518 bifunctional cytidyla 99.6 1.1E-15 2.5E-20 127.9 11.0 114 21-141 449-575 (712)
191 PRK00089 era GTPase Era; Revie 99.6 5E-16 1.1E-20 117.7 7.7 115 21-142 4-128 (292)
192 PRK09518 bifunctional cytidyla 99.6 2.7E-15 5.9E-20 125.7 12.8 118 18-142 271-398 (712)
193 PRK12296 obgE GTPase CgtA; Rev 99.6 1.6E-15 3.5E-20 121.3 9.9 118 23-144 160-301 (500)
194 cd04104 p47_IIGP_like p47 (47- 99.6 1.8E-15 3.8E-20 108.6 9.1 112 22-140 1-120 (197)
195 PRK15467 ethanolamine utilizat 99.6 8.3E-16 1.8E-20 106.7 7.1 99 24-141 3-105 (158)
196 PRK10218 GTP-binding protein; 99.6 3.7E-15 7.9E-20 122.2 11.7 118 21-143 4-136 (607)
197 TIGR00475 selB selenocysteine- 99.6 2.8E-15 6.1E-20 122.8 10.8 112 23-144 1-120 (581)
198 TIGR00491 aIF-2 translation in 99.6 2.4E-15 5.3E-20 122.9 10.3 113 21-141 3-135 (590)
199 PRK05433 GTP-binding protein L 99.6 3.3E-15 7E-20 122.7 10.5 118 20-142 5-141 (600)
200 KOG0076 GTP-binding ADP-ribosy 99.6 1.3E-16 2.9E-21 109.4 1.7 119 18-141 13-140 (197)
201 COG1160 Predicted GTPases [Gen 99.6 1.4E-15 3E-20 118.6 7.4 130 23-159 4-149 (444)
202 PRK12298 obgE GTPase CgtA; Rev 99.6 3.9E-15 8.4E-20 116.7 9.8 117 24-143 161-291 (390)
203 PRK00093 GTP-binding protein D 99.6 1.2E-14 2.7E-19 115.6 12.4 115 20-141 171-298 (435)
204 PRK12317 elongation factor 1-a 99.6 7.7E-15 1.7E-19 116.5 10.8 121 19-141 3-153 (425)
205 cd00880 Era_like Era (E. coli 99.6 1.1E-14 2.3E-19 99.2 9.6 112 27-144 1-121 (163)
206 PF01926 MMR_HSR1: 50S ribosom 99.6 2.5E-14 5.3E-19 94.2 10.9 105 24-136 1-116 (116)
207 TIGR00483 EF-1_alpha translati 99.6 9.2E-15 2E-19 116.1 10.4 122 19-141 4-155 (426)
208 PRK04004 translation initiatio 99.6 1.2E-14 2.6E-19 119.1 10.9 113 20-140 4-136 (586)
209 cd04166 CysN_ATPS CysN_ATPS su 99.6 1.1E-14 2.3E-19 105.4 9.2 112 24-141 1-144 (208)
210 PRK09554 feoB ferrous iron tra 99.6 1.4E-14 3E-19 121.7 11.1 116 22-146 3-131 (772)
211 KOG1423 Ras-like GTPase ERA [C 99.6 9.3E-15 2E-19 108.8 8.8 131 14-148 64-206 (379)
212 cd01896 DRG The developmentall 99.6 3.4E-14 7.3E-19 104.5 11.1 82 24-107 2-91 (233)
213 TIGR01394 TypA_BipA GTP-bindin 99.6 1.4E-14 3E-19 118.8 10.0 116 23-143 2-132 (594)
214 cd04170 EF-G_bact Elongation f 99.6 1.2E-14 2.6E-19 108.9 8.9 114 24-142 1-131 (268)
215 KOG0072 GTP-binding ADP-ribosy 99.6 1.9E-15 4.1E-20 100.9 3.9 117 20-141 16-133 (182)
216 PRK13351 elongation factor G; 99.6 1.1E-14 2.4E-19 121.7 8.1 116 19-142 5-140 (687)
217 TIGR00437 feoB ferrous iron tr 99.6 2.7E-14 5.8E-19 117.3 10.2 109 29-146 1-118 (591)
218 COG1159 Era GTPase [General fu 99.6 4E-14 8.7E-19 105.3 10.1 118 20-144 4-131 (298)
219 COG0486 ThdF Predicted GTPase 99.5 6.3E-14 1.4E-18 109.7 10.7 117 20-144 215-341 (454)
220 COG0218 Predicted GTPase [Gene 99.5 4.9E-14 1.1E-18 99.6 9.0 118 17-142 19-150 (200)
221 cd01888 eIF2_gamma eIF2-gamma 99.5 5E-14 1.1E-18 101.5 9.3 115 23-141 1-151 (203)
222 cd01876 YihA_EngB The YihA (En 99.5 3.8E-14 8.3E-19 97.8 8.4 109 24-140 1-123 (170)
223 PF00009 GTP_EFTU: Elongation 99.5 7.6E-14 1.6E-18 99.3 9.9 115 21-141 2-136 (188)
224 PRK00741 prfC peptide chain re 99.5 4.1E-14 9E-19 114.6 8.9 119 20-143 8-147 (526)
225 cd01886 EF-G Elongation factor 99.5 4.9E-14 1.1E-18 105.7 8.5 113 24-141 1-130 (270)
226 TIGR00503 prfC peptide chain r 99.5 8.6E-14 1.9E-18 112.8 10.1 117 20-141 9-146 (527)
227 smart00010 small_GTPase Small 99.5 4.8E-14 1.1E-18 93.2 6.2 102 23-154 1-104 (124)
228 COG1160 Predicted GTPases [Gen 99.5 3.9E-13 8.6E-18 105.0 10.6 123 20-149 176-311 (444)
229 TIGR00484 EF-G translation elo 99.5 3.1E-13 6.8E-18 113.0 10.3 116 19-141 7-141 (689)
230 cd00066 G-alpha G protein alph 99.5 3.6E-13 7.9E-18 103.2 9.4 75 68-144 159-245 (317)
231 cd01883 EF1_alpha Eukaryotic e 99.5 2.4E-13 5.2E-18 99.1 7.9 114 24-140 1-150 (219)
232 COG1084 Predicted GTPase [Gene 99.4 5.3E-13 1.2E-17 100.4 9.1 118 21-141 167-294 (346)
233 cd01884 EF_Tu EF-Tu subfamily. 99.4 8.5E-13 1.8E-17 94.6 9.6 115 22-141 2-132 (195)
234 TIGR00490 aEF-2 translation el 99.4 4.3E-13 9.3E-18 112.6 8.2 117 20-141 17-152 (720)
235 TIGR03680 eif2g_arch translati 99.4 5E-13 1.1E-17 105.6 7.7 119 20-142 2-149 (406)
236 cd01852 AIG1 AIG1 (avrRpt2-ind 99.4 3E-12 6.4E-17 91.7 10.3 113 23-141 1-130 (196)
237 KOG0090 Signal recognition par 99.4 6.7E-13 1.5E-17 94.3 6.4 113 23-140 39-158 (238)
238 PRK10512 selenocysteinyl-tRNA- 99.4 2.2E-12 4.7E-17 106.4 10.2 112 24-142 2-119 (614)
239 TIGR00991 3a0901s02IAP34 GTP-b 99.4 3.3E-12 7.2E-17 96.6 9.6 123 20-146 36-172 (313)
240 TIGR00485 EF-Tu translation el 99.4 2.8E-12 6E-17 101.0 9.5 117 19-142 9-143 (394)
241 PRK12736 elongation factor Tu; 99.4 3E-12 6.5E-17 100.9 9.5 118 19-141 9-142 (394)
242 smart00275 G_alpha G protein a 99.4 1.6E-12 3.5E-17 100.4 7.7 72 70-143 184-267 (342)
243 PRK05124 cysN sulfate adenylyl 99.4 2.9E-12 6.3E-17 103.0 9.3 120 18-141 23-174 (474)
244 cd04165 GTPBP1_like GTPBP1-lik 99.4 6.4E-12 1.4E-16 91.9 10.3 112 24-142 1-153 (224)
245 PRK04000 translation initiatio 99.4 2.3E-12 4.9E-17 102.0 8.5 119 19-142 6-154 (411)
246 cd01853 Toc34_like Toc34-like 99.4 6.6E-12 1.4E-16 93.1 9.9 119 18-140 27-162 (249)
247 CHL00071 tufA elongation facto 99.4 5.9E-12 1.3E-16 99.6 10.1 118 19-141 9-142 (409)
248 PRK12735 elongation factor Tu; 99.4 6.3E-12 1.4E-16 99.1 10.2 117 20-141 10-142 (396)
249 PRK12739 elongation factor G; 99.3 8.9E-12 1.9E-16 104.4 11.0 115 20-141 6-139 (691)
250 KOG3886 GTP-binding protein [S 99.3 1.3E-12 2.8E-17 94.0 4.8 119 21-141 3-130 (295)
251 PLN03126 Elongation factor Tu; 99.3 8.3E-12 1.8E-16 100.3 9.9 118 19-141 78-211 (478)
252 COG3596 Predicted GTPase [Gene 99.3 2E-12 4.2E-17 95.4 5.3 117 19-141 36-162 (296)
253 COG0370 FeoB Fe2+ transport sy 99.3 2.2E-11 4.8E-16 99.2 11.1 122 21-151 2-132 (653)
254 KOG1707 Predicted Ras related/ 99.3 6E-11 1.3E-15 95.0 11.9 126 15-145 418-544 (625)
255 TIGR02034 CysN sulfate adenyly 99.3 1.4E-11 3E-16 97.4 7.8 115 23-141 1-147 (406)
256 PRK00007 elongation factor G; 99.3 2.3E-11 4.9E-16 102.0 9.4 116 19-141 7-141 (693)
257 PF10662 PduV-EutP: Ethanolami 99.3 1.7E-11 3.7E-16 83.0 6.4 97 23-140 2-102 (143)
258 PLN03127 Elongation factor Tu; 99.3 5E-11 1.1E-15 95.2 10.2 115 20-141 59-191 (447)
259 PRK00049 elongation factor Tu; 99.2 8.4E-11 1.8E-15 92.7 10.6 117 20-141 10-142 (396)
260 PRK05506 bifunctional sulfate 99.2 3.7E-11 7.9E-16 99.9 8.6 118 20-141 22-171 (632)
261 PLN00116 translation elongatio 99.2 3.5E-11 7.7E-16 102.6 8.4 117 19-140 16-163 (843)
262 PLN00043 elongation factor 1-a 99.2 4.5E-11 9.8E-16 95.5 8.0 116 20-140 5-158 (447)
263 PRK12740 elongation factor G; 99.2 2.9E-11 6.2E-16 101.1 7.0 110 28-142 1-127 (668)
264 KOG1489 Predicted GTP-binding 99.2 1.3E-10 2.8E-15 87.3 9.7 114 24-140 198-325 (366)
265 PTZ00416 elongation factor 2; 99.2 5.7E-11 1.2E-15 101.3 8.3 117 19-140 16-157 (836)
266 PF04548 AIG1: AIG1 family; I 99.2 1E-10 2.2E-15 84.9 8.1 117 23-142 1-131 (212)
267 KOG1191 Mitochondrial GTPase [ 99.2 2.2E-10 4.7E-15 90.3 9.1 121 20-142 266-404 (531)
268 KOG3905 Dynein light intermedi 99.2 2.2E-10 4.7E-15 86.5 8.7 104 19-124 49-157 (473)
269 KOG1532 GTPase XAB1, interacts 99.1 5.9E-11 1.3E-15 87.7 5.2 124 16-142 13-196 (366)
270 COG1163 DRG Predicted GTPase [ 99.1 1.1E-09 2.4E-14 82.6 11.8 89 18-108 59-155 (365)
271 PTZ00141 elongation factor 1- 99.1 4E-10 8.6E-15 90.1 10.0 116 20-139 5-157 (446)
272 PRK07560 elongation factor EF- 99.1 3.7E-10 8.1E-15 95.2 9.1 117 19-140 17-152 (731)
273 COG0536 Obg Predicted GTPase [ 99.1 1.3E-09 2.8E-14 82.7 10.4 115 25-142 162-290 (369)
274 KOG0082 G-protein alpha subuni 99.1 4.6E-10 9.9E-15 86.2 7.7 79 70-148 195-283 (354)
275 PF05049 IIGP: Interferon-indu 99.1 2.1E-10 4.6E-15 89.0 5.9 112 20-139 33-153 (376)
276 PF05783 DLIC: Dynein light in 99.1 1.4E-09 3.1E-14 87.0 9.9 88 20-110 23-117 (472)
277 PF00735 Septin: Septin; Inte 99.0 5.7E-09 1.2E-13 78.8 12.4 115 21-140 3-155 (281)
278 COG2262 HflX GTPases [General 99.0 2.2E-09 4.7E-14 83.3 10.0 118 20-141 190-318 (411)
279 cd01899 Ygr210 Ygr210 subfamil 99.0 4.8E-10 1E-14 85.9 6.4 80 25-104 1-110 (318)
280 cd01882 BMS1 Bms1. Bms1 is an 99.0 1.9E-09 4.1E-14 79.0 9.1 109 20-140 37-146 (225)
281 COG0532 InfB Translation initi 99.0 3.2E-09 7E-14 84.6 10.4 117 21-142 4-122 (509)
282 PF00350 Dynamin_N: Dynamin fa 99.0 1.4E-09 3.1E-14 75.7 7.3 62 72-137 103-168 (168)
283 PRK09866 hypothetical protein; 99.0 2.7E-09 5.9E-14 87.4 9.2 69 70-141 230-303 (741)
284 TIGR00993 3a0901s04IAP86 chlor 99.0 3.6E-09 7.8E-14 86.9 9.7 118 18-141 114-250 (763)
285 KOG1145 Mitochondrial translat 99.0 4.3E-09 9.2E-14 84.2 9.8 117 17-141 148-267 (683)
286 KOG0462 Elongation factor-type 99.0 6.9E-09 1.5E-13 83.0 10.1 119 20-143 58-193 (650)
287 COG5256 TEF1 Translation elong 99.0 4.8E-09 1E-13 81.4 9.0 130 19-148 4-166 (428)
288 KOG0468 U5 snRNP-specific prot 98.9 6.3E-09 1.4E-13 84.9 9.0 117 18-139 124-261 (971)
289 PRK09602 translation-associate 98.9 9.8E-09 2.1E-13 80.9 9.5 82 23-104 2-113 (396)
290 KOG1490 GTP-binding protein CR 98.9 9.8E-10 2.1E-14 87.0 2.5 120 21-142 167-296 (620)
291 PRK14845 translation initiatio 98.8 1.7E-08 3.8E-13 87.2 9.3 100 34-141 473-592 (1049)
292 PRK13768 GTPase; Provisional 98.8 3.8E-09 8.2E-14 78.7 4.4 72 71-142 98-177 (253)
293 PF00503 G-alpha: G-protein al 98.8 1.7E-08 3.6E-13 79.6 8.2 72 70-143 236-319 (389)
294 cd01857 HSR1_MMR1 HSR1/MMR1. 98.8 1.3E-08 2.8E-13 69.2 6.4 53 24-80 85-138 (141)
295 COG0480 FusA Translation elong 98.8 2.7E-08 5.8E-13 83.1 9.4 118 19-141 7-142 (697)
296 smart00053 DYNc Dynamin, GTPas 98.8 4.6E-08 1E-12 72.1 9.4 68 70-141 125-206 (240)
297 COG1217 TypA Predicted membran 98.8 3E-08 6.5E-13 78.2 8.5 119 21-144 4-137 (603)
298 KOG3887 Predicted small GTPase 98.8 1.7E-08 3.8E-13 73.6 6.1 115 21-139 26-147 (347)
299 COG4917 EutP Ethanolamine util 98.7 8.4E-09 1.8E-13 67.8 3.2 104 23-146 2-109 (148)
300 COG5019 CDC3 Septin family pro 98.7 2.2E-07 4.8E-12 71.4 11.1 117 19-140 20-175 (373)
301 PTZ00258 GTP-binding protein; 98.7 2.4E-08 5.1E-13 78.3 6.0 84 20-104 19-126 (390)
302 TIGR02836 spore_IV_A stage IV 98.7 1.4E-07 3E-12 74.1 9.9 115 21-138 16-191 (492)
303 PTZ00327 eukaryotic translatio 98.7 4.6E-08 1E-12 78.4 7.4 120 18-141 30-185 (460)
304 COG0481 LepA Membrane GTPase L 98.7 1.4E-07 3E-12 74.7 9.3 120 18-142 5-143 (603)
305 PRK09601 GTP-binding protein Y 98.7 5.7E-08 1.2E-12 75.5 7.2 81 23-104 3-107 (364)
306 TIGR00157 ribosome small subun 98.7 1.6E-08 3.5E-13 75.0 4.0 63 81-147 24-87 (245)
307 COG4108 PrfC Peptide chain rel 98.7 8.2E-08 1.8E-12 75.2 7.8 119 20-143 10-149 (528)
308 PF03029 ATP_bind_1: Conserved 98.7 4.1E-09 8.9E-14 77.8 0.4 68 71-141 92-170 (238)
309 cd01900 YchF YchF subfamily. 98.7 3.1E-08 6.7E-13 74.4 5.1 79 25-104 1-103 (274)
310 cd01858 NGP_1 NGP-1. Autoanti 98.7 1.1E-07 2.3E-12 65.7 6.9 55 21-79 101-156 (157)
311 KOG2655 Septin family protein 98.6 4.3E-07 9.3E-12 70.1 10.3 118 18-140 17-171 (366)
312 cd04178 Nucleostemin_like Nucl 98.6 1.4E-07 3.1E-12 66.3 6.8 55 21-79 116-171 (172)
313 cd01859 MJ1464 MJ1464. This f 98.6 1.5E-07 3.2E-12 64.9 6.8 55 21-79 100-155 (156)
314 cd01856 YlqF YlqF. Proteins o 98.6 1.8E-07 3.8E-12 65.6 6.6 57 20-80 113-170 (171)
315 KOG0705 GTPase-activating prot 98.6 2E-08 4.4E-13 80.4 1.6 124 21-152 29-154 (749)
316 KOG1144 Translation initiation 98.6 2.6E-07 5.5E-12 76.5 7.6 119 17-143 470-608 (1064)
317 KOG2486 Predicted GTPase [Gene 98.5 1.9E-07 4E-12 69.4 5.7 119 15-141 129-262 (320)
318 KOG1486 GTP-binding protein DR 98.5 2.4E-06 5.2E-11 63.0 11.1 94 17-112 57-158 (364)
319 TIGR03596 GTPase_YlqF ribosome 98.5 4E-07 8.7E-12 68.7 7.3 56 21-80 117-173 (276)
320 KOG1547 Septin CDC10 and relat 98.5 7.8E-07 1.7E-11 65.0 8.0 117 18-139 42-196 (336)
321 KOG0458 Elongation factor 1 al 98.5 2.8E-06 6E-11 68.7 11.7 129 18-147 173-335 (603)
322 PRK09563 rbgA GTPase YlqF; Rev 98.5 6.9E-07 1.5E-11 67.8 7.7 56 21-80 120-176 (287)
323 cd01849 YlqF_related_GTPase Yl 98.4 1.4E-06 3.1E-11 60.0 6.7 55 20-79 98-154 (155)
324 PF03193 DUF258: Protein of un 98.4 4E-07 8.7E-12 63.1 3.9 24 23-46 36-59 (161)
325 COG2895 CysN GTPases - Sulfate 98.4 4.6E-06 9.9E-11 64.1 9.8 123 20-146 4-158 (431)
326 cd01855 YqeH YqeH. YqeH is an 98.4 6.4E-07 1.4E-11 63.7 4.9 25 22-46 127-151 (190)
327 COG1161 Predicted GTPases [Gen 98.3 1.5E-06 3.2E-11 67.0 6.5 55 21-80 131-187 (322)
328 PRK12288 GTPase RsgA; Reviewed 98.3 8.5E-07 1.8E-11 68.9 4.7 24 24-47 207-230 (347)
329 TIGR00750 lao LAO/AO transport 98.2 7E-06 1.5E-10 62.7 7.2 25 20-44 32-56 (300)
330 KOG0099 G protein subunit Galp 98.2 1.4E-06 3.1E-11 64.4 3.2 74 67-140 199-282 (379)
331 TIGR00092 GTP-binding protein 98.2 6.6E-06 1.4E-10 64.2 7.0 81 23-104 3-108 (368)
332 KOG4273 Uncharacterized conser 98.2 3.9E-06 8.6E-11 61.8 5.3 124 24-152 6-134 (418)
333 TIGR03348 VI_IcmF type VI secr 98.2 4.3E-06 9.3E-11 74.2 6.5 112 25-140 114-256 (1169)
334 PRK12289 GTPase RsgA; Reviewed 98.1 3.4E-06 7.3E-11 65.7 4.4 23 24-46 174-196 (352)
335 PRK09435 membrane ATPase/prote 98.1 6.3E-06 1.4E-10 63.6 5.5 61 69-141 148-208 (332)
336 KOG1954 Endocytosis/signaling 98.1 1.7E-05 3.8E-10 61.4 7.5 123 18-145 54-229 (532)
337 cd01854 YjeQ_engC YjeQ/EngC. 98.1 4.9E-06 1.1E-10 63.2 4.5 25 23-47 162-186 (287)
338 TIGR00157 ribosome small subun 98.1 4.6E-06 9.9E-11 61.9 4.2 24 23-46 121-144 (245)
339 COG1162 Predicted GTPases [Gen 98.0 1E-05 2.2E-10 61.2 5.5 22 24-45 166-187 (301)
340 TIGR03597 GTPase_YqeH ribosome 98.0 1E-05 2.2E-10 63.4 5.4 24 23-46 155-178 (360)
341 COG0012 Predicted GTPase, prob 98.0 3.3E-05 7.1E-10 59.9 7.9 83 22-104 2-108 (372)
342 KOG0085 G protein subunit Galp 98.0 1.2E-06 2.6E-11 63.8 0.1 75 68-144 197-283 (359)
343 cd01851 GBP Guanylate-binding 98.0 2.7E-05 5.9E-10 57.0 7.2 84 21-104 6-102 (224)
344 PRK00098 GTPase RsgA; Reviewed 98.0 1E-05 2.2E-10 61.8 4.6 25 22-46 164-188 (298)
345 KOG0461 Selenocysteine-specifi 97.9 9E-05 2E-09 57.1 8.5 113 21-139 6-134 (522)
346 PRK13796 GTPase YqeH; Provisio 97.9 1.9E-05 4.1E-10 61.9 4.5 25 22-46 160-184 (365)
347 KOG1424 Predicted GTP-binding 97.8 4.4E-05 9.5E-10 61.2 5.8 55 22-80 314-369 (562)
348 COG0050 TufB GTPases - transla 97.8 3.6E-05 7.8E-10 58.0 5.0 121 20-145 10-146 (394)
349 KOG0448 Mitofusin 1 GTPase, in 97.8 0.00015 3.3E-09 60.0 8.8 118 20-142 107-276 (749)
350 PF06858 NOG1: Nucleolar GTP-b 97.8 6.3E-05 1.4E-09 42.8 4.6 45 94-138 14-58 (58)
351 KOG0467 Translation elongation 97.8 8.6E-05 1.9E-09 62.1 7.1 115 18-139 5-136 (887)
352 cd01855 YqeH YqeH. YqeH is an 97.8 2.4E-05 5.2E-10 55.6 3.5 52 83-141 24-75 (190)
353 KOG0447 Dynamin-like GTP bindi 97.8 0.00015 3.3E-09 59.0 8.1 72 70-144 412-496 (980)
354 cd03112 CobW_like The function 97.8 0.00014 2.9E-09 50.4 6.9 21 25-45 3-23 (158)
355 PRK13695 putative NTPase; Prov 97.7 9.2E-05 2E-09 51.9 5.8 22 23-44 1-22 (174)
356 KOG0464 Elongation factor G [T 97.7 8.4E-06 1.8E-10 64.1 0.5 122 14-140 29-167 (753)
357 cd01857 HSR1_MMR1 HSR1/MMR1. 97.7 4.1E-05 8.8E-10 51.9 3.7 52 89-143 7-58 (141)
358 KOG1491 Predicted GTP-binding 97.7 0.0002 4.3E-09 55.0 7.0 83 20-103 18-124 (391)
359 COG1419 FlhF Flagellar GTP-bin 97.7 0.00012 2.6E-09 57.5 6.0 26 22-47 203-228 (407)
360 KOG3859 Septins (P-loop GTPase 97.6 0.00026 5.7E-09 53.1 7.3 119 17-140 37-189 (406)
361 COG1618 Predicted nucleotide k 97.6 0.00073 1.6E-08 46.8 8.8 56 21-78 4-59 (179)
362 TIGR03597 GTPase_YqeH ribosome 97.6 2.4E-05 5.1E-10 61.3 1.4 55 80-141 50-104 (360)
363 PF13207 AAA_17: AAA domain; P 97.6 6.8E-05 1.5E-09 49.1 3.2 22 24-45 1-22 (121)
364 KOG0410 Predicted GTP binding 97.6 0.00011 2.4E-09 56.1 4.4 116 22-141 178-308 (410)
365 PRK08118 topology modulation p 97.5 7.4E-05 1.6E-09 52.3 3.1 23 23-45 2-24 (167)
366 TIGR01425 SRP54_euk signal rec 97.5 0.00043 9.2E-09 55.3 7.5 23 21-43 99-121 (429)
367 COG5192 BMS1 GTP-binding prote 97.5 0.0004 8.6E-09 56.9 7.2 111 20-142 67-178 (1077)
368 cd01854 YjeQ_engC YjeQ/EngC. 97.5 0.00015 3.2E-09 55.1 4.6 51 88-142 73-124 (287)
369 PRK12289 GTPase RsgA; Reviewed 97.5 0.00018 3.8E-09 56.2 5.0 53 86-142 82-135 (352)
370 PRK07261 topology modulation p 97.5 9.1E-05 2E-09 52.0 3.1 21 24-44 2-22 (171)
371 PF13671 AAA_33: AAA domain; P 97.5 9.2E-05 2E-09 49.9 2.9 20 25-44 2-21 (143)
372 COG0563 Adk Adenylate kinase a 97.5 0.0001 2.3E-09 52.1 3.2 23 23-45 1-23 (178)
373 cd00009 AAA The AAA+ (ATPases 97.5 0.00051 1.1E-08 45.6 6.4 24 23-46 20-43 (151)
374 PRK12727 flagellar biosynthesi 97.5 0.00023 5E-09 58.1 5.3 24 21-44 349-372 (559)
375 PRK00098 GTPase RsgA; Reviewed 97.4 0.00023 5.1E-09 54.3 5.0 49 91-142 78-126 (298)
376 COG1126 GlnQ ABC-type polar am 97.4 0.00011 2.3E-09 53.2 2.9 23 24-46 30-52 (240)
377 PF13555 AAA_29: P-loop contai 97.4 0.00018 3.9E-09 41.8 3.0 20 24-43 25-44 (62)
378 cd01858 NGP_1 NGP-1. Autoanti 97.4 0.00023 4.9E-09 49.1 4.1 51 90-143 5-55 (157)
379 COG1116 TauB ABC-type nitrate/ 97.4 0.00017 3.6E-09 53.2 3.0 22 25-46 32-53 (248)
380 PRK14738 gmk guanylate kinase; 97.4 0.00026 5.5E-09 51.2 4.0 27 19-45 10-36 (206)
381 COG3523 IcmF Type VI protein s 97.3 0.00027 5.8E-09 62.4 4.4 113 25-140 128-269 (1188)
382 COG1136 SalX ABC-type antimicr 97.3 0.00018 4E-09 52.6 2.9 21 24-44 33-53 (226)
383 PF05621 TniB: Bacterial TniB 97.3 0.00041 8.9E-09 52.7 4.9 29 18-46 57-85 (302)
384 cd02038 FleN-like FleN is a me 97.3 0.00069 1.5E-08 45.8 5.3 106 27-140 5-110 (139)
385 PF00005 ABC_tran: ABC transpo 97.3 0.00025 5.4E-09 47.5 3.0 23 24-46 13-35 (137)
386 PF13521 AAA_28: AAA domain; P 97.3 0.00018 3.8E-09 49.9 2.3 22 24-45 1-22 (163)
387 smart00382 AAA ATPases associa 97.3 0.0003 6.6E-09 46.2 3.3 26 23-48 3-28 (148)
388 PRK06217 hypothetical protein; 97.2 0.00027 5.9E-09 50.0 3.1 23 23-45 2-24 (183)
389 cd01859 MJ1464 MJ1464. This f 97.2 0.00021 4.6E-09 49.1 2.4 52 85-141 4-55 (156)
390 PRK14737 gmk guanylate kinase; 97.2 0.00032 6.9E-09 49.9 3.3 23 23-45 5-27 (186)
391 KOG2485 Conserved ATP/GTP bind 97.2 0.00031 6.7E-09 53.3 3.3 60 20-80 141-206 (335)
392 PRK10078 ribose 1,5-bisphospho 97.2 0.00029 6.3E-09 50.0 3.0 22 24-45 4-25 (186)
393 cd02019 NK Nucleoside/nucleoti 97.2 0.00036 7.9E-09 41.4 2.9 21 25-45 2-22 (69)
394 cd00071 GMPK Guanosine monopho 97.2 0.00032 6.9E-09 47.4 3.0 21 25-45 2-22 (137)
395 PF00004 AAA: ATPase family as 97.2 0.00034 7.3E-09 46.2 3.0 21 25-45 1-21 (132)
396 TIGR02322 phosphon_PhnN phosph 97.2 0.00033 7.1E-09 49.2 2.9 22 24-45 3-24 (179)
397 TIGR00235 udk uridine kinase. 97.2 0.00046 1E-08 49.8 3.8 26 19-44 3-28 (207)
398 PF03266 NTPase_1: NTPase; In 97.2 0.00042 9.1E-09 48.5 3.3 52 24-77 1-52 (168)
399 COG0194 Gmk Guanylate kinase [ 97.2 0.00042 9.1E-09 49.0 3.2 24 23-46 5-28 (191)
400 TIGR03263 guanyl_kin guanylate 97.2 0.00038 8.3E-09 48.8 3.0 22 24-45 3-24 (180)
401 COG1120 FepC ABC-type cobalami 97.2 0.00036 7.8E-09 52.0 3.0 21 24-44 30-50 (258)
402 KOG1143 Predicted translation 97.1 0.0014 2.9E-08 51.3 6.0 118 20-142 165-318 (591)
403 COG3276 SelB Selenocysteine-sp 97.1 0.002 4.4E-08 51.1 7.0 111 25-142 3-118 (447)
404 PRK14530 adenylate kinase; Pro 97.1 0.00045 9.7E-09 50.1 3.2 21 23-43 4-24 (215)
405 PRK03839 putative kinase; Prov 97.1 0.00045 9.8E-09 48.6 3.1 22 24-45 2-23 (180)
406 cd00820 PEPCK_HprK Phosphoenol 97.1 0.00046 1E-08 44.7 2.8 21 23-43 16-36 (107)
407 COG3839 MalK ABC-type sugar tr 97.1 0.00041 8.9E-09 53.7 3.0 22 25-46 32-53 (338)
408 PF04665 Pox_A32: Poxvirus A32 97.1 0.00046 1E-08 51.0 3.1 26 20-45 11-36 (241)
409 PF13238 AAA_18: AAA domain; P 97.1 0.00046 9.9E-09 45.4 2.8 21 25-45 1-21 (129)
410 cd03238 ABC_UvrA The excision 97.1 0.00055 1.2E-08 48.3 3.2 22 23-44 22-43 (176)
411 COG1117 PstB ABC-type phosphat 97.1 0.0011 2.5E-08 48.0 4.8 20 24-43 35-54 (253)
412 TIGR00101 ureG urease accessor 97.1 0.00055 1.2E-08 49.2 3.3 24 22-45 1-24 (199)
413 PRK10751 molybdopterin-guanine 97.1 0.00065 1.4E-08 47.8 3.4 25 21-45 5-29 (173)
414 TIGR01360 aden_kin_iso1 adenyl 97.1 0.00052 1.1E-08 48.4 3.0 21 23-43 4-24 (188)
415 PF03205 MobB: Molybdopterin g 97.1 0.00058 1.3E-08 46.4 3.1 22 24-45 2-23 (140)
416 PF07728 AAA_5: AAA domain (dy 97.1 0.00059 1.3E-08 45.8 3.1 21 24-44 1-21 (139)
417 PLN02200 adenylate kinase fami 97.0 0.00087 1.9E-08 49.4 4.1 26 19-44 40-65 (234)
418 PRK14531 adenylate kinase; Pro 97.0 0.00063 1.4E-08 48.1 3.2 23 22-44 2-24 (183)
419 PRK13949 shikimate kinase; Pro 97.0 0.00064 1.4E-08 47.6 3.1 21 24-44 3-23 (169)
420 PRK12288 GTPase RsgA; Reviewed 97.0 0.0015 3.2E-08 51.0 5.3 47 91-141 118-164 (347)
421 KOG0465 Mitochondrial elongati 97.0 0.0012 2.6E-08 54.3 4.9 117 20-141 37-170 (721)
422 KOG1487 GTP-binding protein DR 97.0 0.0034 7.4E-08 46.8 6.8 92 20-113 57-156 (358)
423 PRK00300 gmk guanylate kinase; 97.0 0.00062 1.3E-08 48.8 3.0 23 23-45 6-28 (205)
424 PRK14532 adenylate kinase; Pro 97.0 0.00069 1.5E-08 48.0 3.1 21 24-44 2-22 (188)
425 cd03255 ABC_MJ0796_Lo1CDE_FtsE 97.0 0.00075 1.6E-08 48.9 3.2 23 24-46 32-54 (218)
426 cd03222 ABC_RNaseL_inhibitor T 97.0 0.00074 1.6E-08 47.7 3.0 24 23-46 26-49 (177)
427 COG3840 ThiQ ABC-type thiamine 97.0 0.00077 1.7E-08 47.8 3.0 24 24-47 27-50 (231)
428 cd01983 Fer4_NifH The Fer4_Nif 97.0 0.0056 1.2E-07 37.8 6.8 74 25-112 2-76 (99)
429 cd01428 ADK Adenylate kinase ( 96.9 0.00069 1.5E-08 48.0 2.8 22 24-45 1-22 (194)
430 PF13191 AAA_16: AAA ATPase do 96.9 0.00071 1.5E-08 47.3 2.8 23 21-43 23-45 (185)
431 TIGR00960 3a0501s02 Type II (G 96.9 0.00084 1.8E-08 48.6 3.2 23 24-46 31-53 (216)
432 COG3842 PotA ABC-type spermidi 96.9 0.00072 1.6E-08 52.6 3.0 22 25-46 34-55 (352)
433 TIGR01359 UMP_CMP_kin_fam UMP- 96.9 0.0008 1.7E-08 47.3 3.0 20 25-44 2-21 (183)
434 PRK01889 GTPase RsgA; Reviewed 96.9 0.001 2.2E-08 52.1 3.9 24 23-46 196-219 (356)
435 TIGR01166 cbiO cobalt transpor 96.9 0.00081 1.8E-08 47.7 3.0 22 24-45 20-41 (190)
436 cd03225 ABC_cobalt_CbiO_domain 96.9 0.00081 1.7E-08 48.5 3.0 23 24-46 29-51 (211)
437 PTZ00088 adenylate kinase 1; P 96.9 0.00094 2E-08 49.1 3.4 24 22-45 6-29 (229)
438 PRK02496 adk adenylate kinase; 96.9 0.00093 2E-08 47.2 3.2 22 23-44 2-23 (184)
439 cd03226 ABC_cobalt_CbiO_domain 96.9 0.00091 2E-08 48.1 3.2 23 24-46 28-50 (205)
440 cd03261 ABC_Org_Solvent_Resist 96.9 0.00091 2E-08 49.1 3.2 23 24-46 28-50 (235)
441 PF09547 Spore_IV_A: Stage IV 96.9 0.028 6E-07 44.9 11.4 114 22-138 17-191 (492)
442 cd01130 VirB11-like_ATPase Typ 96.9 0.00095 2.1E-08 47.4 3.2 24 22-45 25-48 (186)
443 TIGR00073 hypB hydrogenase acc 96.9 0.00096 2.1E-08 48.1 3.3 26 20-45 20-45 (207)
444 cd03264 ABC_drug_resistance_li 96.9 0.00086 1.9E-08 48.4 3.0 22 24-45 27-48 (211)
445 PF13401 AAA_22: AAA domain; P 96.9 0.00087 1.9E-08 44.3 2.8 23 24-46 6-28 (131)
446 cd03292 ABC_FtsE_transporter F 96.9 0.00096 2.1E-08 48.1 3.3 22 24-45 29-50 (214)
447 COG3638 ABC-type phosphate/pho 96.9 0.00086 1.9E-08 49.2 2.9 20 25-44 33-52 (258)
448 PLN02459 probable adenylate ki 96.9 0.0015 3.1E-08 48.9 4.2 24 21-44 28-51 (261)
449 TIGR01351 adk adenylate kinase 96.9 0.00076 1.7E-08 48.8 2.7 21 24-44 1-21 (210)
450 PRK05480 uridine/cytidine kina 96.9 0.0012 2.6E-08 47.6 3.6 26 20-45 4-29 (209)
451 TIGR02673 FtsE cell division A 96.9 0.001 2.2E-08 48.1 3.2 22 24-45 30-51 (214)
452 cd01131 PilT Pilus retraction 96.9 0.0009 1.9E-08 48.0 2.9 22 25-46 4-25 (198)
453 cd03262 ABC_HisP_GlnQ_permease 96.9 0.001 2.2E-08 47.9 3.3 23 24-46 28-50 (213)
454 COG4525 TauB ABC-type taurine 96.9 0.00094 2E-08 48.0 2.8 21 24-44 33-53 (259)
455 TIGR02315 ABC_phnC phosphonate 96.9 0.001 2.2E-08 49.0 3.2 22 24-45 30-51 (243)
456 TIGR01313 therm_gnt_kin carboh 96.9 0.00076 1.7E-08 46.6 2.4 21 25-45 1-21 (163)
457 TIGR03608 L_ocin_972_ABC putat 96.9 0.0011 2.3E-08 47.6 3.3 23 24-46 26-48 (206)
458 cd02023 UMPK Uridine monophosp 96.9 0.00093 2E-08 47.7 2.9 21 25-45 2-22 (198)
459 cd03224 ABC_TM1139_LivF_branch 96.9 0.001 2.2E-08 48.3 3.2 23 24-46 28-50 (222)
460 KOG3929 Uncharacterized conser 96.9 0.00031 6.7E-09 52.2 0.4 89 18-110 41-136 (363)
461 cd03259 ABC_Carb_Solutes_like 96.9 0.0011 2.3E-08 47.9 3.3 22 24-45 28-49 (213)
462 cd03263 ABC_subfamily_A The AB 96.9 0.00097 2.1E-08 48.4 3.0 23 24-46 30-52 (220)
463 cd03265 ABC_DrrA DrrA is the A 96.9 0.0011 2.4E-08 48.2 3.3 22 24-45 28-49 (220)
464 PRK00625 shikimate kinase; Pro 96.9 0.0011 2.3E-08 46.7 3.1 21 24-44 2-22 (173)
465 cd03269 ABC_putative_ATPase Th 96.9 0.0011 2.4E-08 47.8 3.3 23 24-46 28-50 (210)
466 COG1703 ArgK Putative periplas 96.9 0.0032 7E-08 47.8 5.7 24 21-44 50-73 (323)
467 cd02042 ParA ParA and ParB of 96.8 0.0058 1.3E-07 38.9 6.3 82 25-119 2-84 (104)
468 cd03218 ABC_YhbG The ABC trans 96.8 0.0011 2.4E-08 48.5 3.2 23 24-46 28-50 (232)
469 cd03293 ABC_NrtD_SsuB_transpor 96.8 0.001 2.2E-08 48.3 3.0 23 24-46 32-54 (220)
470 cd03221 ABCF_EF-3 ABCF_EF-3 E 96.8 0.0011 2.3E-08 45.2 2.9 23 24-46 28-50 (144)
471 PRK13541 cytochrome c biogenes 96.8 0.0012 2.5E-08 47.2 3.2 23 24-46 28-50 (195)
472 TIGR02211 LolD_lipo_ex lipopro 96.8 0.0012 2.5E-08 48.0 3.3 23 24-46 33-55 (221)
473 cd03219 ABC_Mj1267_LivG_branch 96.8 0.0011 2.4E-08 48.6 3.1 22 24-45 28-49 (236)
474 cd03258 ABC_MetN_methionine_tr 96.8 0.0012 2.6E-08 48.3 3.3 23 24-46 33-55 (233)
475 PRK15177 Vi polysaccharide exp 96.8 0.0011 2.4E-08 48.0 3.0 24 23-46 14-37 (213)
476 cd03260 ABC_PstB_phosphate_tra 96.8 0.0012 2.7E-08 48.1 3.2 23 24-46 28-50 (227)
477 cd03229 ABC_Class3 This class 96.8 0.0013 2.9E-08 46.2 3.3 22 24-45 28-49 (178)
478 cd03256 ABC_PhnC_transporter A 96.8 0.0011 2.5E-08 48.7 3.0 23 24-46 29-51 (241)
479 PRK11629 lolD lipoprotein tran 96.8 0.0013 2.7E-08 48.3 3.3 23 24-46 37-59 (233)
480 cd03301 ABC_MalK_N The N-termi 96.8 0.0012 2.5E-08 47.7 3.0 23 24-46 28-50 (213)
481 PRK08233 hypothetical protein; 96.8 0.0014 3E-08 45.9 3.4 22 23-44 4-25 (182)
482 PRK05057 aroK shikimate kinase 96.8 0.0013 2.7E-08 46.2 3.1 23 23-45 5-27 (172)
483 cd03216 ABC_Carb_Monos_I This 96.8 0.0014 3E-08 45.5 3.3 23 24-46 28-50 (163)
484 TIGR01189 ccmA heme ABC export 96.8 0.0013 2.9E-08 46.9 3.3 23 24-46 28-50 (198)
485 cd03257 ABC_NikE_OppD_transpor 96.8 0.0013 2.8E-08 48.0 3.2 23 24-46 33-55 (228)
486 COG1121 ZnuC ABC-type Mn/Zn tr 96.8 0.0012 2.6E-08 49.1 3.0 21 24-44 32-52 (254)
487 cd03266 ABC_NatA_sodium_export 96.8 0.0013 2.9E-08 47.6 3.2 23 24-46 33-55 (218)
488 PRK11248 tauB taurine transpor 96.8 0.0013 2.9E-08 49.0 3.3 23 24-46 29-51 (255)
489 cd03268 ABC_BcrA_bacitracin_re 96.8 0.0012 2.7E-08 47.4 3.0 23 24-46 28-50 (208)
490 cd03223 ABCD_peroxisomal_ALDP 96.8 0.0014 3.1E-08 45.6 3.2 23 24-46 29-51 (166)
491 cd03235 ABC_Metallic_Cations A 96.8 0.0013 2.8E-08 47.5 3.1 23 24-46 27-49 (213)
492 PRK13540 cytochrome c biogenes 96.8 0.0014 3.1E-08 46.9 3.3 23 24-46 29-51 (200)
493 cd03214 ABC_Iron-Siderophores_ 96.8 0.0015 3.2E-08 46.1 3.3 23 24-46 27-49 (180)
494 PF05729 NACHT: NACHT domain 96.8 0.0013 2.8E-08 45.0 2.9 21 25-45 3-23 (166)
495 PRK13539 cytochrome c biogenes 96.8 0.0014 3.1E-08 47.2 3.3 23 24-46 30-52 (207)
496 COG0410 LivF ABC-type branched 96.8 0.0013 2.8E-08 48.0 3.0 23 24-46 31-53 (237)
497 cd03215 ABC_Carb_Monos_II This 96.8 0.0015 3.2E-08 46.2 3.2 23 24-46 28-50 (182)
498 cd03296 ABC_CysA_sulfate_impor 96.8 0.0013 2.8E-08 48.4 3.0 23 24-46 30-52 (239)
499 PRK10908 cell division protein 96.8 0.0015 3.2E-08 47.6 3.3 23 24-46 30-52 (222)
500 cd03111 CpaE_like This protein 96.8 0.0052 1.1E-07 39.6 5.5 101 25-136 2-106 (106)
No 1
>KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=6.8e-39 Score=222.60 Aligned_cols=137 Identities=34% Similarity=0.683 Sum_probs=129.5
Q ss_pred CcceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeeeE-EEEEECCeEEEEEEEeCCCcccccccccccccCCcE
Q 044772 18 TATKFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFS-ANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADV 96 (159)
Q Consensus 18 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ 96 (159)
.....+||+|+|++|||||||+.||..+.|.+.|..|++..+. +.+.+++..++++||||+||++|+.+..+||+++|+
T Consensus 5 ~~dylFKiiliGds~VGKtCL~~Rf~~~~f~e~~~sTIGVDf~~rt~e~~gk~iKlQIWDTAGQERFrtit~syYR~ahG 84 (205)
T KOG0084|consen 5 EYDYLFKIILIGDSGVGKTCLLLRFKDDTFTESYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHG 84 (205)
T ss_pred ccceEEEEEEECCCCcChhhhhhhhccCCcchhhcceeeeEEEEEEeeecceEEEEEeeeccccHHHhhhhHhhccCCCe
Confidence 4567899999999999999999999999999999999999985 488899999999999999999999999999999999
Q ss_pred EEEEEeCCChhhHHhhhhhhHHHHHhhhC-CCCCEEEEeeCcccccCccccccCCCccccc
Q 044772 97 FILAFSLISRPSYENISKKKWVPELRHYA-PSVPIVLVGTKLDLRKDRQFHLDYPGAYTIS 156 (159)
Q Consensus 97 ~i~v~d~~~~~s~~~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~r~v~~~~~~~~~~~ 156 (159)
+|+|||+++.+||+.+. .|+.++.++. +++|.+|||||||+.++|+|+.++++.||..
T Consensus 85 ii~vyDiT~~~SF~~v~--~Wi~Ei~~~~~~~v~~lLVGNK~Dl~~~~~v~~~~a~~fa~~ 143 (205)
T KOG0084|consen 85 IIFVYDITKQESFNNVK--RWIQEIDRYASENVPKLLVGNKCDLTEKRVVSTEEAQEFADE 143 (205)
T ss_pred EEEEEEcccHHHhhhHH--HHHHHhhhhccCCCCeEEEeeccccHhheecCHHHHHHHHHh
Confidence 99999999999999999 9999999998 5789999999999999999999999888753
No 2
>KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=6.6e-36 Score=205.93 Aligned_cols=136 Identities=29% Similarity=0.569 Sum_probs=129.6
Q ss_pred cceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeee-EEEEEECCeEEEEEEEeCCCcccccccccccccCCcEE
Q 044772 19 ATKFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNF-SANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADVF 97 (159)
Q Consensus 19 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ 97 (159)
....+|++++|+.|||||+|+.||+...|.+.+..|++..+ ...+.+++..+++++||++|++.|.+....||+.+.++
T Consensus 3 ~~~~fKyIiiGd~gVGKSclllrf~~krF~~~hd~TiGvefg~r~~~id~k~IKlqiwDtaGqe~frsv~~syYr~a~Ga 82 (216)
T KOG0098|consen 3 YAYLFKYIIIGDTGVGKSCLLLRFTDKRFQPVHDLTIGVEFGARMVTIDGKQIKLQIWDTAGQESFRSVTRSYYRGAAGA 82 (216)
T ss_pred ccceEEEEEECCCCccHHHHHHHHhccCccccccceeeeeeceeEEEEcCceEEEEEEecCCcHHHHHHHHHHhccCcce
Confidence 45678999999999999999999999999999999999999 55889999999999999999999999999999999999
Q ss_pred EEEEeCCChhhHHhhhhhhHHHHHhhhC-CCCCEEEEeeCcccccCccccccCCCccccc
Q 044772 98 ILAFSLISRPSYENISKKKWVPELRHYA-PSVPIVLVGTKLDLRKDRQFHLDYPGAYTIS 156 (159)
Q Consensus 98 i~v~d~~~~~s~~~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~r~v~~~~~~~~~~~ 156 (159)
++|||++.+++|+.+. .|++.++++. ++..|+|+|||+||...|.|+.||+++||.+
T Consensus 83 lLVydit~r~sF~hL~--~wL~D~rq~~~~NmvImLiGNKsDL~~rR~Vs~EEGeaFA~e 140 (216)
T KOG0098|consen 83 LLVYDITRRESFNHLT--SWLEDARQHSNENMVIMLIGNKSDLEARREVSKEEGEAFARE 140 (216)
T ss_pred EEEEEccchhhHHHHH--HHHHHHHHhcCCCcEEEEEcchhhhhccccccHHHHHHHHHH
Confidence 9999999999999999 9999999995 8999999999999999999999999999864
No 3
>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=5.4e-34 Score=197.85 Aligned_cols=135 Identities=36% Similarity=0.561 Sum_probs=125.0
Q ss_pred CcceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeee-EEEEEECCeEEEEEEEeCCCcccccccccccccCCcE
Q 044772 18 TATKFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNF-SANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADV 96 (159)
Q Consensus 18 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ 96 (159)
.+.+.+|++++|+.+||||||++||+.++|...|.+|++..| .+.+.+.+..+.+++|||.|||+|+.+...|++++.+
T Consensus 18 ~~~k~~KlVflGdqsVGKTslItRf~yd~fd~~YqATIGiDFlskt~~l~d~~vrLQlWDTAGQERFrslipsY~Rds~v 97 (221)
T KOG0094|consen 18 APLKKYKLVFLGDQSVGKTSLITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSV 97 (221)
T ss_pred ccceEEEEEEEccCccchHHHHHHHHHhhhcccccceeeeEEEEEEEEEcCcEEEEEEEecccHHHHhhhhhhhccCCeE
Confidence 445669999999999999999999999999999999999888 6688889999999999999999999999999999999
Q ss_pred EEEEEeCCChhhHHhhhhhhHHHHHhhhCC--CCCEEEEeeCcccccCccccccCCCccc
Q 044772 97 FILAFSLISRPSYENISKKKWVPELRHYAP--SVPIVLVGTKLDLRKDRQFHLDYPGAYT 154 (159)
Q Consensus 97 ~i~v~d~~~~~s~~~~~~~~~~~~i~~~~~--~~piilv~nK~Dl~~~r~v~~~~~~~~~ 154 (159)
+|+|||+++..+|.... .|++.+..... ++-|+|||||.||.+.|+|+.+|++.-|
T Consensus 98 aviVyDit~~~Sfe~t~--kWi~dv~~e~gs~~viI~LVGnKtDL~dkrqvs~eEg~~kA 155 (221)
T KOG0094|consen 98 AVIVYDITDRNSFENTS--KWIEDVRRERGSDDVIIFLVGNKTDLSDKRQVSIEEGERKA 155 (221)
T ss_pred EEEEEeccccchHHHHH--HHHHHHHhccCCCceEEEEEcccccccchhhhhHHHHHHHH
Confidence 99999999999999999 99999998763 4778999999999999999999987643
No 4
>KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=5.5e-34 Score=197.44 Aligned_cols=136 Identities=37% Similarity=0.674 Sum_probs=127.0
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeee-EEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEE
Q 044772 20 TKFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNF-SANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADVFI 98 (159)
Q Consensus 20 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i 98 (159)
...+|++++|.++||||||+.|+..+.|.+...+|++--| .+.+.+++..++|.||||+|+++|.++-+.||++++++|
T Consensus 3 ~~~~KvvLLG~~~VGKSSlV~Rfvk~~F~e~~e~TIGaaF~tktv~~~~~~ikfeIWDTAGQERy~slapMYyRgA~AAi 82 (200)
T KOG0092|consen 3 TREFKVVLLGDSGVGKSSLVLRFVKDQFHENIEPTIGAAFLTKTVTVDDNTIKFEIWDTAGQERYHSLAPMYYRGANAAI 82 (200)
T ss_pred cceEEEEEECCCCCCchhhhhhhhhCccccccccccccEEEEEEEEeCCcEEEEEEEEcCCcccccccccceecCCcEEE
Confidence 4678999999999999999999999999988889998877 678888999999999999999999999999999999999
Q ss_pred EEEeCCChhhHHhhhhhhHHHHHhhhC-CCCCEEEEeeCcccccCccccccCCCcccccc
Q 044772 99 LAFSLISRPSYENISKKKWVPELRHYA-PSVPIVLVGTKLDLRKDRQFHLDYPGAYTIST 157 (159)
Q Consensus 99 ~v~d~~~~~s~~~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~r~v~~~~~~~~~~~~ 157 (159)
+|||+++.+||..++ .|+.++.+.. +++-|.|||||+||.+.|+|..++++.||.++
T Consensus 83 vvYDit~~~SF~~aK--~WvkeL~~~~~~~~vialvGNK~DL~~~R~V~~~ea~~yAe~~ 140 (200)
T KOG0092|consen 83 VVYDITDEESFEKAK--NWVKELQRQASPNIVIALVGNKADLLERREVEFEEAQAYAESQ 140 (200)
T ss_pred EEEecccHHHHHHHH--HHHHHHHhhCCCCeEEEEecchhhhhhcccccHHHHHHHHHhc
Confidence 999999999999999 9999999887 46778889999999999999999999998764
No 5
>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=8.9e-34 Score=199.40 Aligned_cols=137 Identities=32% Similarity=0.616 Sum_probs=130.1
Q ss_pred CcceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeee-EEEEEECCeEEEEEEEeCCCcccccccccccccCCcE
Q 044772 18 TATKFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNF-SANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADV 96 (159)
Q Consensus 18 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ 96 (159)
+....+||+++|+++||||+|+.+|..+.|...+..|++..+ .+.+..++..+.+++||+.||++|..+...|++.+++
T Consensus 8 ~~d~~~kvlliGDs~vGKt~~l~rf~d~~f~~~~~sTiGIDFk~kti~l~g~~i~lQiWDtaGQerf~ti~~sYyrgA~g 87 (207)
T KOG0078|consen 8 DYDYLFKLLLIGDSGVGKTCLLLRFSDDSFNTSFISTIGIDFKIKTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMG 87 (207)
T ss_pred CcceEEEEEEECCCCCchhHhhhhhhhccCcCCccceEEEEEEEEEEEeCCeEEEEEEEEcccchhHHHHHHHHHhhcCe
Confidence 667899999999999999999999999999999999999888 4588899999999999999999999999999999999
Q ss_pred EEEEEeCCChhhHHhhhhhhHHHHHhhhCC-CCCEEEEeeCcccccCccccccCCCccccc
Q 044772 97 FILAFSLISRPSYENISKKKWVPELRHYAP-SVPIVLVGTKLDLRKDRQFHLDYPGAYTIS 156 (159)
Q Consensus 97 ~i~v~d~~~~~s~~~~~~~~~~~~i~~~~~-~~piilv~nK~Dl~~~r~v~~~~~~~~~~~ 156 (159)
+++|||+++..+|+.+. .|+..+.++.+ .+|++|||||+|+.++|+|+.+.++++|..
T Consensus 88 i~LvyDitne~Sfeni~--~W~~~I~e~a~~~v~~~LvGNK~D~~~~R~V~~e~ge~lA~e 146 (207)
T KOG0078|consen 88 ILLVYDITNEKSFENIR--NWIKNIDEHASDDVVKILVGNKCDLEEKRQVSKERGEALARE 146 (207)
T ss_pred eEEEEEccchHHHHHHH--HHHHHHHhhCCCCCcEEEeeccccccccccccHHHHHHHHHH
Confidence 99999999999999999 89999999985 999999999999999999999999998754
No 6
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=100.00 E-value=8.7e-33 Score=196.09 Aligned_cols=135 Identities=35% Similarity=0.679 Sum_probs=122.5
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEE
Q 044772 20 TKFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL 99 (159)
Q Consensus 20 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~ 99 (159)
...+||+++|++|||||||++++..+.|...|.||.+..+...+.+++..+.+++||++|++.|..++..++++++++|+
T Consensus 3 ~~~~KivvvGd~~vGKTsli~~~~~~~f~~~~~pT~~~~~~~~~~~~~~~~~l~iwDtaG~e~~~~~~~~~~~~ad~~il 82 (182)
T cd04172 3 NVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLI 82 (182)
T ss_pred cceEEEEEECCCCCCHHHHHHHHHhCCCCCccCCceeeeeEEEEEECCEEEEEEEEECCCchhhHhhhhhhcCCCCEEEE
Confidence 46789999999999999999999999999999999988887778889999999999999999999999999999999999
Q ss_pred EEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCccccc------------CccccccCCCcccc
Q 044772 100 AFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRK------------DRQFHLDYPGAYTI 155 (159)
Q Consensus 100 v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~------------~r~v~~~~~~~~~~ 155 (159)
|||++++.+|..+.. .|+..+....++.|++|||||+||.+ ++.|+.++++.||-
T Consensus 83 vyDit~~~Sf~~~~~-~w~~~i~~~~~~~piilVgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~ 149 (182)
T cd04172 83 CFDISRPETLDSVLK-KWKGEIQEFCPNTKMLLVGCKSDLRTDLTTLVELSNHRQTPVSYDQGANMAK 149 (182)
T ss_pred EEECCCHHHHHHHHH-HHHHHHHHHCCCCCEEEEeEChhhhcChhhHHHHHhcCCCCCCHHHHHHHHH
Confidence 999999999999843 99999998888999999999999975 35688888887763
No 7
>KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only]
Probab=100.00 E-value=5.9e-34 Score=189.80 Aligned_cols=135 Identities=32% Similarity=0.625 Sum_probs=128.5
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeeeE-EEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEE
Q 044772 21 KFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFS-ANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL 99 (159)
Q Consensus 21 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~ 99 (159)
..+|.+++|++|+|||||+.+|..+.|..+|..|++..+. .++.+++..++++|||+.|++.|+.+...|++..+++++
T Consensus 7 hLfkllIigDsgVGKssLl~rF~ddtFs~sYitTiGvDfkirTv~i~G~~VkLqIwDtAGqErFrtitstyyrgthgv~v 86 (198)
T KOG0079|consen 7 HLFKLLIIGDSGVGKSSLLLRFADDTFSGSYITTIGVDFKIRTVDINGDRVKLQIWDTAGQERFRTITSTYYRGTHGVIV 86 (198)
T ss_pred HHHHHHeecCCcccHHHHHHHHhhcccccceEEEeeeeEEEEEeecCCcEEEEEEeecccHHHHHHHHHHHccCCceEEE
Confidence 4568899999999999999999999999999999999884 488899999999999999999999999999999999999
Q ss_pred EEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCcccccCccccccCCCcccccc
Q 044772 100 AFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKDRQFHLDYPGAYTIST 157 (159)
Q Consensus 100 v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~r~v~~~~~~~~~~~~ 157 (159)
|||+++.++|.+.. +|++++...++.+|-+|||||.|.++.|.|..+++++||.+.
T Consensus 87 VYDVTn~ESF~Nv~--rWLeei~~ncdsv~~vLVGNK~d~~~RrvV~t~dAr~~A~~m 142 (198)
T KOG0079|consen 87 VYDVTNGESFNNVK--RWLEEIRNNCDSVPKVLVGNKNDDPERRVVDTEDARAFALQM 142 (198)
T ss_pred EEECcchhhhHhHH--HHHHHHHhcCccccceecccCCCCccceeeehHHHHHHHHhc
Confidence 99999999999999 999999999999999999999999999999999999999764
No 8
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=100.00 E-value=1.8e-32 Score=193.48 Aligned_cols=131 Identities=80% Similarity=1.289 Sum_probs=117.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEEEEe
Q 044772 23 IKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFS 102 (159)
Q Consensus 23 ~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d 102 (159)
+||+++|++|||||||+.++..+.|...|.+|.+..+...+.+++..+++.+||++|++.|..++..++++++++|+|||
T Consensus 2 ~kivv~G~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~~~~~~~~~~~v~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilvyd 81 (176)
T cd04133 2 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVSVDGNTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFS 81 (176)
T ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCCCCCCcceeeeEEEEEECCEEEEEEEEECCCCccccccchhhcCCCcEEEEEEE
Confidence 69999999999999999999999999999999988887777788889999999999999999999999999999999999
Q ss_pred CCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCcccccCc----------cccccCCCccc
Q 044772 103 LISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKDR----------QFHLDYPGAYT 154 (159)
Q Consensus 103 ~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~r----------~v~~~~~~~~~ 154 (159)
++++++|..+.. .|+..+....+++|++|||||+||.+++ .|+.++++.||
T Consensus 82 ~~~~~Sf~~~~~-~w~~~i~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~v~~~~~~~~a 142 (176)
T cd04133 82 LISRASYENVLK-KWVPELRHYAPNVPIVLVGTKLDLRDDKQYLADHPGASPITTAQGEELR 142 (176)
T ss_pred cCCHHHHHHHHH-HHHHHHHHhCCCCCEEEEEeChhhccChhhhhhccCCCCCCHHHHHHHH
Confidence 999999999843 8999998877899999999999997765 36666665554
No 9
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=100.00 E-value=2.3e-32 Score=193.28 Aligned_cols=132 Identities=34% Similarity=0.678 Sum_probs=119.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEEEEe
Q 044772 23 IKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFS 102 (159)
Q Consensus 23 ~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d 102 (159)
+||+++|++|||||||+++|..+.|...|.||.+..+...+.+++..+.+++||++|++.+..+...++++++++|+|||
T Consensus 2 ~Kiv~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~~ilvfd 81 (178)
T cd04131 2 CKIVVVGDVQCGKTALLQVFAKDCYPETYVPTVFENYTASFEIDEQRIELSLWDTSGSPYYDNVRPLCYPDSDAVLICFD 81 (178)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCcCCCCcCCceEEEEEEEEEECCEEEEEEEEECCCchhhhhcchhhcCCCCEEEEEEE
Confidence 69999999999999999999999999999999988887778889999999999999999999999999999999999999
Q ss_pred CCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCccccc------------CccccccCCCcccc
Q 044772 103 LISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRK------------DRQFHLDYPGAYTI 155 (159)
Q Consensus 103 ~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~------------~r~v~~~~~~~~~~ 155 (159)
++++++|+.+.. .|+..+....++.|++|||||+||.+ .+.|+.+++++||-
T Consensus 82 it~~~Sf~~~~~-~w~~~i~~~~~~~~iilVgnK~DL~~~~~~~~~~~~~~~~~v~~~e~~~~a~ 145 (178)
T cd04131 82 ISRPETLDSVLK-KWRGEIQEFCPNTKVLLVGCKTDLRTDLSTLMELSHQRQAPVSYEQGCAIAK 145 (178)
T ss_pred CCChhhHHHHHH-HHHHHHHHHCCCCCEEEEEEChhhhcChhHHHHHHhcCCCCCCHHHHHHHHH
Confidence 999999999633 99999998888999999999999965 35688777777763
No 10
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=99.98 E-value=4.6e-32 Score=193.36 Aligned_cols=133 Identities=32% Similarity=0.563 Sum_probs=121.1
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeee-EEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEE
Q 044772 20 TKFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNF-SANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADVFI 98 (159)
Q Consensus 20 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i 98 (159)
...+||+++|..|||||||+++|..+.+...+.++.+..+ ...+.+++..+.+++||++|++.+..++..++++++++|
T Consensus 4 ~~~~KivviG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~l~~~~~~~ad~il 83 (189)
T cd04121 4 DYLLKFLLVGDSDVGKGEILASLQDGSTESPYGYNMGIDYKTTTILLDGRRVKLQLWDTSGQGRFCTIFRSYSRGAQGII 83 (189)
T ss_pred CceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCcceeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhcCCCEEE
Confidence 4569999999999999999999999999888888877666 345677888899999999999999999999999999999
Q ss_pred EEEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCcccccCccccccCCCccc
Q 044772 99 LAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKDRQFHLDYPGAYT 154 (159)
Q Consensus 99 ~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~r~v~~~~~~~~~ 154 (159)
+|||++++++|..+. .|++.+....+++|++|||||+||.+.|+++.++++.||
T Consensus 84 lVfD~t~~~Sf~~~~--~w~~~i~~~~~~~piilVGNK~DL~~~~~v~~~~~~~~a 137 (189)
T cd04121 84 LVYDITNRWSFDGID--RWIKEIDEHAPGVPKILVGNRLHLAFKRQVATEQAQAYA 137 (189)
T ss_pred EEEECcCHHHHHHHH--HHHHHHHHhCCCCCEEEEEECccchhccCCCHHHHHHHH
Confidence 999999999999998 999999888789999999999999999999988887776
No 11
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=99.98 E-value=6.1e-32 Score=193.09 Aligned_cols=121 Identities=66% Similarity=1.131 Sum_probs=111.3
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEEEE
Q 044772 22 FIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAF 101 (159)
Q Consensus 22 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 101 (159)
.+||+++|++|||||||++++..+.|...|.||.+..+...+.+++..+.+++||++|++.+..++..++++++++|+||
T Consensus 3 ~~ki~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~~~l~~~~~~~a~~~ilvy 82 (191)
T cd01875 3 SIKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNYSAQTAVDGRTVSLNLWDTAGQEEYDRLRTLSYPQTNVFIICF 82 (191)
T ss_pred cEEEEEECCCCCCHHHHHHHHHhCCCCcCCCCceEeeeEEEEEECCEEEEEEEEECCCchhhhhhhhhhccCCCEEEEEE
Confidence 48999999999999999999999999989999998888766778888999999999999999999999999999999999
Q ss_pred eCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCcccccCc
Q 044772 102 SLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKDR 143 (159)
Q Consensus 102 d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~r 143 (159)
|++++++|+.+.. .|+..+....+++|++|||||+||.+.+
T Consensus 83 dit~~~Sf~~~~~-~w~~~i~~~~~~~piilvgNK~DL~~~~ 123 (191)
T cd01875 83 SIASPSSYENVRH-KWHPEVCHHCPNVPILLVGTKKDLRNDA 123 (191)
T ss_pred ECCCHHHHHHHHH-HHHHHHHhhCCCCCEEEEEeChhhhcCh
Confidence 9999999999964 6998888777789999999999997654
No 12
>KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.98 E-value=3.7e-32 Score=190.79 Aligned_cols=139 Identities=36% Similarity=0.575 Sum_probs=131.1
Q ss_pred CCCcceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeee-EEEEEECCeEEEEEEEeCCCcccccccccccccCC
Q 044772 16 TTTATKFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNF-SANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGA 94 (159)
Q Consensus 16 ~~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~ 94 (159)
.......+||+++|+++||||=|+.||..++|.....+|++..+ ...+.++++.++.+||||.||++|+.+...|++.+
T Consensus 8 ~~~~dylFKiVliGDS~VGKsnLlsRftrnEF~~~SksTIGvef~t~t~~vd~k~vkaqIWDTAGQERyrAitSaYYrgA 87 (222)
T KOG0087|consen 8 SEEYDYLFKIVLIGDSAVGKSNLLSRFTRNEFSLESKSTIGVEFATRTVNVDGKTVKAQIWDTAGQERYRAITSAYYRGA 87 (222)
T ss_pred ccccceEEEEEEeCCCccchhHHHHHhcccccCcccccceeEEEEeeceeecCcEEEEeeecccchhhhccccchhhccc
Confidence 34667889999999999999999999999999999999999988 55888999999999999999999999999999999
Q ss_pred cEEEEEEeCCChhhHHhhhhhhHHHHHhhhC-CCCCEEEEeeCcccccCccccccCCCccccc
Q 044772 95 DVFILAFSLISRPSYENISKKKWVPELRHYA-PSVPIVLVGTKLDLRKDRQFHLDYPGAYTIS 156 (159)
Q Consensus 95 ~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~r~v~~~~~~~~~~~ 156 (159)
.++++|||++.+.+|+.+. +|+.+++.+. ++++|+|||||+||...|.|+.|+++.||..
T Consensus 88 vGAllVYDITr~~Tfenv~--rWL~ELRdhad~nivimLvGNK~DL~~lraV~te~~k~~Ae~ 148 (222)
T KOG0087|consen 88 VGALLVYDITRRQTFENVE--RWLKELRDHADSNIVIMLVGNKSDLNHLRAVPTEDGKAFAEK 148 (222)
T ss_pred ceeEEEEechhHHHHHHHH--HHHHHHHhcCCCCeEEEEeecchhhhhccccchhhhHhHHHh
Confidence 9999999999999999998 9999999998 7999999999999999999999999999864
No 13
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.98 E-value=6.7e-32 Score=197.64 Aligned_cols=136 Identities=35% Similarity=0.620 Sum_probs=122.8
Q ss_pred cceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEE
Q 044772 19 ATKFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADVFI 98 (159)
Q Consensus 19 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i 98 (159)
....+||++||++|||||||+++|..+.|...|.||.+..+...+.+++..+.+++|||+|++.|..+...++++++++|
T Consensus 10 ~~~~~KIvvvGd~~VGKTsLi~r~~~~~F~~~y~pTi~~~~~~~i~~~~~~v~l~iwDTaG~e~~~~~~~~~~~~ad~vI 89 (232)
T cd04174 10 LVMRCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTAGLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVL 89 (232)
T ss_pred ceeeEEEEEECCCCCcHHHHHHHHhcCCCCCCcCCceeeeeEEEEEECCEEEEEEEEeCCCchhhHHHHHHHcCCCcEEE
Confidence 35678999999999999999999999999999999998888777888999999999999999999999999999999999
Q ss_pred EEEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCccccc------------CccccccCCCcccc
Q 044772 99 LAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRK------------DRQFHLDYPGAYTI 155 (159)
Q Consensus 99 ~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~------------~r~v~~~~~~~~~~ 155 (159)
+|||++++++|..+.. .|+..+....++.|++|||||+||.+ .++|+.++++.||-
T Consensus 90 lVyDit~~~Sf~~~~~-~w~~~i~~~~~~~piilVgNK~DL~~~~~~~~~l~~~~~~~Vs~~e~~~~a~ 157 (232)
T cd04174 90 LCFDISRPETVDSALK-KWKAEIMDYCPSTRILLIGCKTDLRTDLSTLMELSNQKQAPISYEQGCALAK 157 (232)
T ss_pred EEEECCChHHHHHHHH-HHHHHHHHhCCCCCEEEEEECcccccccchhhhhccccCCcCCHHHHHHHHH
Confidence 9999999999998533 99999998878899999999999975 47788888877764
No 14
>KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only]
Probab=99.98 E-value=2.7e-32 Score=184.08 Aligned_cols=137 Identities=31% Similarity=0.562 Sum_probs=125.6
Q ss_pred CcceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeeeE-EEEEECCeEEEEEEEeCCCcccccccccccccCCcE
Q 044772 18 TATKFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFS-ANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADV 96 (159)
Q Consensus 18 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ 96 (159)
.....+||++||.+|||||||+.+|..+.|.+....|++..+. +.+.+++.++++-||||.|+++|+.+...||+.+.+
T Consensus 7 ~~~~t~KiLlIGeSGVGKSSLllrFv~~~fd~~~~~tIGvDFkvk~m~vdg~~~KlaiWDTAGqErFRtLTpSyyRgaqG 86 (209)
T KOG0080|consen 7 GYDTTFKILLIGESGVGKSSLLLRFVSNTFDDLHPTTIGVDFKVKVMQVDGKRLKLAIWDTAGQERFRTLTPSYYRGAQG 86 (209)
T ss_pred CcceeEEEEEEccCCccHHHHHHHHHhcccCccCCceeeeeEEEEEEEEcCceEEEEEEeccchHhhhccCHhHhccCce
Confidence 3456799999999999999999999999998887778999884 577899999999999999999999999999999999
Q ss_pred EEEEEeCCChhhHHhhhhhhHHHHHhhhC--CCCCEEEEeeCcccccCccccccCCCccccc
Q 044772 97 FILAFSLISRPSYENISKKKWVPELRHYA--PSVPIVLVGTKLDLRKDRQFHLDYPGAYTIS 156 (159)
Q Consensus 97 ~i~v~d~~~~~s~~~~~~~~~~~~i~~~~--~~~piilv~nK~Dl~~~r~v~~~~~~~~~~~ 156 (159)
+|+|||++.+++|..++ .|++++..|. +++-.++||||+|.+..|.|+.+|+..||..
T Consensus 87 iIlVYDVT~Rdtf~kLd--~W~~Eld~Ystn~diikmlVgNKiDkes~R~V~reEG~kfAr~ 146 (209)
T KOG0080|consen 87 IILVYDVTSRDTFVKLD--IWLKELDLYSTNPDIIKMLVGNKIDKESERVVDREEGLKFARK 146 (209)
T ss_pred eEEEEEccchhhHHhHH--HHHHHHHhhcCCccHhHhhhcccccchhcccccHHHHHHHHHh
Confidence 99999999999999997 9999999987 4566699999999999999999999988753
No 15
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=99.98 E-value=6.7e-32 Score=194.28 Aligned_cols=130 Identities=29% Similarity=0.587 Sum_probs=117.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeee-EEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEEEE
Q 044772 23 IKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNF-SANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAF 101 (159)
Q Consensus 23 ~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 101 (159)
++|+++|++|||||||+++|..+.|...+.+|.+..+ ...+.+++..+.+++||++|++.|..++..|+++++++|+||
T Consensus 1 ~~vvvlG~~gVGKTSli~r~~~~~f~~~~~~Ti~~~~~~~~i~~~~~~v~l~iwDtaGqe~~~~l~~~y~~~ad~iIlVf 80 (202)
T cd04120 1 LQVIIIGSRGVGKTSLMRRFTDDTFCEACKSGVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVY 80 (202)
T ss_pred CEEEEECcCCCCHHHHHHHHHhCCCCCcCCCcceeEEEEEEEEECCEEEEEEEEeCCCchhhHHHHHHHhcCCCEEEEEE
Confidence 3699999999999999999999999988899988666 456788888899999999999999999999999999999999
Q ss_pred eCCChhhHHhhhhhhHHHHHhhhC-CCCCEEEEeeCcccccCccccccCCCccc
Q 044772 102 SLISRPSYENISKKKWVPELRHYA-PSVPIVLVGTKLDLRKDRQFHLDYPGAYT 154 (159)
Q Consensus 102 d~~~~~s~~~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~r~v~~~~~~~~~ 154 (159)
|++++++|+.+. .|+..+.... +++|++|||||+|+.+.|+++.++++.||
T Consensus 81 Dvtd~~Sf~~l~--~w~~~i~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~a 132 (202)
T cd04120 81 DITKKETFDDLP--KWMKMIDKYASEDAELLLVGNKLDCETDREISRQQGEKFA 132 (202)
T ss_pred ECcCHHHHHHHH--HHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHH
Confidence 999999999998 8999887765 58999999999999988999877765544
No 16
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=99.97 E-value=2.4e-31 Score=187.62 Aligned_cols=119 Identities=64% Similarity=1.165 Sum_probs=109.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEEEEe
Q 044772 23 IKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFS 102 (159)
Q Consensus 23 ~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d 102 (159)
+||+++|++|||||||+++|..+.|...|.||.+..+...+..++..+.+++||++|++.+...+..++++++++|+|||
T Consensus 2 ~ki~vvG~~~vGKTsl~~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilv~d 81 (175)
T cd01874 2 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFS 81 (175)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeEEEEEECCEEEEEEEEECCCccchhhhhhhhcccCCEEEEEEE
Confidence 79999999999999999999999998899999988887677788888999999999999999999999999999999999
Q ss_pred CCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCcccccC
Q 044772 103 LISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKD 142 (159)
Q Consensus 103 ~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~ 142 (159)
++++++|..+.. .|+..+....+++|++|||||+|+.+.
T Consensus 82 ~~~~~s~~~~~~-~w~~~i~~~~~~~piilvgnK~Dl~~~ 120 (175)
T cd01874 82 VVSPSSFENVKE-KWVPEITHHCPKTPFLLVGTQIDLRDD 120 (175)
T ss_pred CCCHHHHHHHHH-HHHHHHHHhCCCCCEEEEEECHhhhhC
Confidence 999999999974 699998877778999999999999764
No 17
>KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=3.9e-31 Score=176.12 Aligned_cols=137 Identities=28% Similarity=0.587 Sum_probs=124.9
Q ss_pred CCCcceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeeeE-EEEEECCeEEEEEEEeCCCcccccccccccccCC
Q 044772 16 TTTATKFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFS-ANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGA 94 (159)
Q Consensus 16 ~~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~ 94 (159)
.+.-....|++++|++.||||||+.++....|...+..|.+..++ +++.....++++++||+.|+|.++.....+++++
T Consensus 15 dqnFDymfKlliiGnssvGKTSfl~ry~ddSFt~afvsTvGidFKvKTvyr~~kRiklQiwDTagqEryrtiTTayyRga 94 (193)
T KOG0093|consen 15 DQNFDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVYRSDKRIKLQIWDTAGQERYRTITTAYYRGA 94 (193)
T ss_pred cccccceeeEEEEccCCccchhhhHHhhccccccceeeeeeeeEEEeEeeecccEEEEEEEecccchhhhHHHHHHhhcc
Confidence 344556679999999999999999999999999999999988884 4666677889999999999999999999999999
Q ss_pred cEEEEEEeCCChhhHHhhhhhhHHHHHhhhC-CCCCEEEEeeCcccccCccccccCCCccc
Q 044772 95 DVFILAFSLISRPSYENISKKKWVPELRHYA-PSVPIVLVGTKLDLRKDRQFHLDYPGAYT 154 (159)
Q Consensus 95 ~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~r~v~~~~~~~~~ 154 (159)
.++|+|||+++.++|+.++ .|.-.|+.++ .++|+||||||||+.++|.|+.|.++.+|
T Consensus 95 mgfiLmyDitNeeSf~svq--dw~tqIktysw~naqvilvgnKCDmd~eRvis~e~g~~l~ 153 (193)
T KOG0093|consen 95 MGFILMYDITNEESFNSVQ--DWITQIKTYSWDNAQVILVGNKCDMDSERVISHERGRQLA 153 (193)
T ss_pred ceEEEEEecCCHHHHHHHH--HHHHHheeeeccCceEEEEecccCCccceeeeHHHHHHHH
Confidence 9999999999999999999 9999999887 69999999999999999999999888765
No 18
>KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=1.5e-31 Score=179.38 Aligned_cols=136 Identities=32% Similarity=0.588 Sum_probs=126.2
Q ss_pred CcceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeee-EEEEEECCeEEEEEEEeCCCcccccccccccccCCcE
Q 044772 18 TATKFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNF-SANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADV 96 (159)
Q Consensus 18 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ 96 (159)
.....+|++++|+.|.|||+|+++|+.+++......|++..+ +..+.+.+..++++|||+.|+++|++..+.|++.+.+
T Consensus 5 tYDyLfKfl~iG~aGtGKSCLLh~Fie~kfkDdssHTiGveFgSrIinVGgK~vKLQIWDTAGQErFRSVtRsYYRGAAG 84 (214)
T KOG0086|consen 5 TYDYLFKFLVIGSAGTGKSCLLHQFIENKFKDDSSHTIGVEFGSRIVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAG 84 (214)
T ss_pred hhhhhheeEEeccCCCChhHHHHHHHHhhhcccccceeeeeecceeeeecCcEEEEEEeecccHHHHHHHHHHHhccccc
Confidence 345678999999999999999999999999999899999998 5577888999999999999999999999999999999
Q ss_pred EEEEEeCCChhhHHhhhhhhHHHHHhhhC-CCCCEEEEeeCcccccCccccccCCCcccc
Q 044772 97 FILAFSLISRPSYENISKKKWVPELRHYA-PSVPIVLVGTKLDLRKDRQFHLDYPGAYTI 155 (159)
Q Consensus 97 ~i~v~d~~~~~s~~~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~r~v~~~~~~~~~~ 155 (159)
.++|||++++++|+.+. .|+..++... +++.++++|||.||..+|+|+..|+..||-
T Consensus 85 AlLVYD~TsrdsfnaLt--nWL~DaR~lAs~nIvviL~GnKkDL~~~R~VtflEAs~Faq 142 (214)
T KOG0086|consen 85 ALLVYDITSRDSFNALT--NWLTDARTLASPNIVVILCGNKKDLDPEREVTFLEASRFAQ 142 (214)
T ss_pred eEEEEeccchhhHHHHH--HHHHHHHhhCCCcEEEEEeCChhhcChhhhhhHHHHHhhhc
Confidence 99999999999999999 9999999876 588899999999999999999999888763
No 19
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=99.97 E-value=8.3e-31 Score=184.35 Aligned_cols=131 Identities=27% Similarity=0.490 Sum_probs=117.9
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEEEE
Q 044772 22 FIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAF 101 (159)
Q Consensus 22 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 101 (159)
.+||+++|.+|||||||++++..+.+...+.+|.+..+...+.+++..+.+++||++|++.+..++..++..++++|+||
T Consensus 2 ~~ki~vvG~~~vGKTsL~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~~ilv~ 81 (172)
T cd04141 2 EYKIVMLGAGGVGKSAVTMQFISHSFPDYHDPTIEDAYKQQARIDNEPALLDILDTAGQAEFTAMRDQYMRCGEGFIICY 81 (172)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCCCcCCcccceEEEEEEECCEEEEEEEEeCCCchhhHHHhHHHhhcCCEEEEEE
Confidence 47999999999999999999999999888899998877777788888899999999999999999999999999999999
Q ss_pred eCCChhhHHhhhhhhHHHHHhhhC--CCCCEEEEeeCcccccCccccccCCCccc
Q 044772 102 SLISRPSYENISKKKWVPELRHYA--PSVPIVLVGTKLDLRKDRQFHLDYPGAYT 154 (159)
Q Consensus 102 d~~~~~s~~~~~~~~~~~~i~~~~--~~~piilv~nK~Dl~~~r~v~~~~~~~~~ 154 (159)
|++++.+|..+. .|...+.+.. +++|++|||||+|+.+.++++.+++..+|
T Consensus 82 d~~~~~Sf~~~~--~~~~~i~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~a 134 (172)
T cd04141 82 SVTDRHSFQEAS--EFKKLITRVRLTEDIPLVLVGNKVDLESQRQVTTEEGRNLA 134 (172)
T ss_pred ECCchhHHHHHH--HHHHHHHHhcCCCCCCEEEEEEChhhhhcCccCHHHHHHHH
Confidence 999999999998 7877776643 57999999999999988989887776654
No 20
>KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=3.8e-31 Score=176.81 Aligned_cols=138 Identities=32% Similarity=0.596 Sum_probs=126.5
Q ss_pred CcceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeee-EEEEEECCeEEEEEEEeCCCcccccccccccccCCcE
Q 044772 18 TATKFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNF-SANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADV 96 (159)
Q Consensus 18 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ 96 (159)
.....+||+++|+.|+|||+|+.+|..+-|++.-..|++..+ .+++.++++++++++||+.|+++|++....|++.+++
T Consensus 3 dykflfkivlvgnagvgktclvrrftqglfppgqgatigvdfmiktvev~gekiklqiwdtagqerfrsitqsyyrsaha 82 (213)
T KOG0095|consen 3 DYKFLFKIVLVGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEVNGEKIKLQIWDTAGQERFRSITQSYYRSAHA 82 (213)
T ss_pred ccceeEEEEEEccCCcCcchhhhhhhccCCCCCCCceeeeeEEEEEEEECCeEEEEEEeeccchHHHHHHHHHHhhhcce
Confidence 345678999999999999999999999999998889999888 6688999999999999999999999999999999999
Q ss_pred EEEEEeCCChhhHHhhhhhhHHHHHhhhCC-CCCEEEEeeCcccccCccccccCCCcccccc
Q 044772 97 FILAFSLISRPSYENISKKKWVPELRHYAP-SVPIVLVGTKLDLRKDRQFHLDYPGAYTIST 157 (159)
Q Consensus 97 ~i~v~d~~~~~s~~~~~~~~~~~~i~~~~~-~~piilv~nK~Dl~~~r~v~~~~~~~~~~~~ 157 (159)
+|++||++-..+|.-+. +|+.+|..+.. ++--|+||||.|+.+.|+|+...++.|+..+
T Consensus 83 lilvydiscqpsfdclp--ewlreie~yan~kvlkilvgnk~d~~drrevp~qigeefs~~q 142 (213)
T KOG0095|consen 83 LILVYDISCQPSFDCLP--EWLREIEQYANNKVLKILVGNKIDLADRREVPQQIGEEFSEAQ 142 (213)
T ss_pred EEEEEecccCcchhhhH--HHHHHHHHHhhcceEEEeeccccchhhhhhhhHHHHHHHHHhh
Confidence 99999999999999999 99999999875 4555999999999999999998888876543
No 21
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=99.97 E-value=2.7e-30 Score=188.17 Aligned_cols=119 Identities=39% Similarity=0.800 Sum_probs=110.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEEEEe
Q 044772 23 IKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFS 102 (159)
Q Consensus 23 ~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d 102 (159)
+||+|||++|||||||+++|..+.|...|.||.+..+...+.+++..+.+.+||++|++.|..++..+++++|++|+|||
T Consensus 2 ~KIvvvGd~~vGKTsLi~~~~~~~f~~~y~pTi~~~~~~~~~~~~~~v~L~iwDt~G~e~~~~l~~~~~~~~d~illvfd 81 (222)
T cd04173 2 CKIVVVGDAECGKTALLQVFAKDAYPGSYVPTVFENYTASFEIDKRRIELNMWDTSGSSYYDNVRPLAYPDSDAVLICFD 81 (222)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCccCCccccceEEEEEECCEEEEEEEEeCCCcHHHHHHhHHhccCCCEEEEEEE
Confidence 79999999999999999999999999999999988887778889999999999999999999999999999999999999
Q ss_pred CCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCcccccC
Q 044772 103 LISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKD 142 (159)
Q Consensus 103 ~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~ 142 (159)
++++++|+.+.. .|...+....+++|++|||||+||.++
T Consensus 82 is~~~Sf~~i~~-~w~~~~~~~~~~~piiLVgnK~DL~~~ 120 (222)
T cd04173 82 ISRPETLDSVLK-KWQGETQEFCPNAKVVLVGCKLDMRTD 120 (222)
T ss_pred CCCHHHHHHHHH-HHHHHHHhhCCCCCEEEEEECcccccc
Confidence 999999999965 899888887789999999999999764
No 22
>KOG0394 consensus Ras-related GTPase [General function prediction only]
Probab=99.97 E-value=6.1e-31 Score=181.05 Aligned_cols=134 Identities=34% Similarity=0.619 Sum_probs=122.9
Q ss_pred cceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeee-EEEEEECCeEEEEEEEeCCCcccccccccccccCCcEE
Q 044772 19 ATKFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNF-SANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADVF 97 (159)
Q Consensus 19 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ 97 (159)
+...+||+++|++|+|||||++++.+++|...|..|++..+ .+.+.++++.+.+++|||+|+++|.++.-.+++++|..
T Consensus 6 K~~lLKViiLGDsGVGKtSLmn~yv~~kF~~qykaTIgadFltKev~Vd~~~vtlQiWDTAGQERFqsLg~aFYRgaDcC 85 (210)
T KOG0394|consen 6 KRTLLKVIILGDSGVGKTSLMNQYVNKKFSQQYKATIGADFLTKEVQVDDRSVTLQIWDTAGQERFQSLGVAFYRGADCC 85 (210)
T ss_pred cccceEEEEeCCCCccHHHHHHHHHHHHHHHHhccccchhheeeEEEEcCeEEEEEEEecccHHHhhhcccceecCCceE
Confidence 35679999999999999999999999999999999999888 77889999999999999999999999999999999999
Q ss_pred EEEEeCCChhhHHhhhhhhHHHHHhhhC-----CCCCEEEEeeCccccc--CccccccCCCccc
Q 044772 98 ILAFSLISRPSYENISKKKWVPELRHYA-----PSVPIVLVGTKLDLRK--DRQFHLDYPGAYT 154 (159)
Q Consensus 98 i~v~d~~~~~s~~~~~~~~~~~~i~~~~-----~~~piilv~nK~Dl~~--~r~v~~~~~~~~~ 154 (159)
++|||++++.+|..+. .|-.++..+. +..|++|+|||+|+.+ .|+|+.+.+..|.
T Consensus 86 vlvydv~~~~Sfe~L~--~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~~~~r~VS~~~Aq~WC 147 (210)
T KOG0394|consen 86 VLVYDVNNPKSFENLE--NWRKEFLIQASPQDPETFPFVILGNKIDVDGGKSRQVSEKKAQTWC 147 (210)
T ss_pred EEEeecCChhhhccHH--HHHHHHHHhcCCCCCCcccEEEEcccccCCCCccceeeHHHHHHHH
Confidence 9999999999999999 9988877664 3689999999999976 3999999887764
No 23
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=99.97 E-value=3.6e-30 Score=181.44 Aligned_cols=119 Identities=73% Similarity=1.273 Sum_probs=108.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEEEEe
Q 044772 23 IKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFS 102 (159)
Q Consensus 23 ~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d 102 (159)
+||+++|++|||||||+.+++.+.|...|.++.+..+...+..++..+++.+||++|++.+...+..++++++++|+|||
T Consensus 2 ~ki~iiG~~~vGKSsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d 81 (174)
T cd01871 2 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFS 81 (174)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCcCCCcceeeeEEEEEECCEEEEEEEEECCCchhhhhhhhhhcCCCCEEEEEEE
Confidence 69999999999999999999999999899999887777677788888999999999999999999999999999999999
Q ss_pred CCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCcccccC
Q 044772 103 LISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKD 142 (159)
Q Consensus 103 ~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~ 142 (159)
++++++|..+.. .|+..+....+++|++|||||+|+.+.
T Consensus 82 ~~~~~sf~~~~~-~~~~~~~~~~~~~piilvgnK~Dl~~~ 120 (174)
T cd01871 82 LVSPASFENVRA-KWYPEVRHHCPNTPIILVGTKLDLRDD 120 (174)
T ss_pred CCCHHHHHHHHH-HHHHHHHHhCCCCCEEEEeeChhhccC
Confidence 999999999864 798888877778999999999999653
No 24
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=99.97 E-value=4.5e-30 Score=179.19 Aligned_cols=131 Identities=31% Similarity=0.620 Sum_probs=115.9
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeeeE-EEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEEE
Q 044772 22 FIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFS-ANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADVFILA 100 (159)
Q Consensus 22 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v 100 (159)
.+||+++|++|||||||++++..+.+...+.++.+..+. ..+.+++..+.+.+||++|++.+...+..++++++++|+|
T Consensus 2 ~~ki~iiG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv 81 (166)
T cd04122 2 IFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMV 81 (166)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCcccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEE
Confidence 479999999999999999999999998888888776663 4567788889999999999999999999999999999999
Q ss_pred EeCCChhhHHhhhhhhHHHHHhhhC-CCCCEEEEeeCcccccCccccccCCCccc
Q 044772 101 FSLISRPSYENISKKKWVPELRHYA-PSVPIVLVGTKLDLRKDRQFHLDYPGAYT 154 (159)
Q Consensus 101 ~d~~~~~s~~~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~r~v~~~~~~~~~ 154 (159)
||++++++|..+. .|+..+.... ++.|+++||||+|+.+.+.++.++++.++
T Consensus 82 ~d~~~~~s~~~~~--~~~~~~~~~~~~~~~iiiv~nK~Dl~~~~~~~~~~~~~~~ 134 (166)
T cd04122 82 YDITRRSTYNHLS--SWLTDARNLTNPNTVIFLIGNKADLEAQRDVTYEEAKQFA 134 (166)
T ss_pred EECCCHHHHHHHH--HHHHHHHHhCCCCCeEEEEEECcccccccCcCHHHHHHHH
Confidence 9999999999998 9998887664 57899999999999988888877666554
No 25
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.97 E-value=1.3e-29 Score=180.78 Aligned_cols=121 Identities=50% Similarity=0.836 Sum_probs=110.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEEEEe
Q 044772 23 IKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFS 102 (159)
Q Consensus 23 ~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d 102 (159)
.||+++|++|||||||+++|..+.+...+.+|.+..+...+..++..+.+++||++|++.+..++..++.+++++|+|||
T Consensus 1 ~kivivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~a~~~ilv~d 80 (189)
T cd04134 1 RKVVVLGDGACGKTSLLNVFTRGYFPQVYEPTVFENYVHDIFVDGLHIELSLWDTAGQEEFDRLRSLSYADTDVIMLCFS 80 (189)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCccCCcceeeeEEEEEECCEEEEEEEEECCCChhccccccccccCCCEEEEEEE
Confidence 48999999999999999999999998888999888877667778888999999999999999999999999999999999
Q ss_pred CCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCcccccCcc
Q 044772 103 LISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKDRQ 144 (159)
Q Consensus 103 ~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~r~ 144 (159)
++++++|+.+.. .|+..+....++.|++|||||+|+.+.++
T Consensus 81 v~~~~sf~~~~~-~~~~~i~~~~~~~piilvgNK~Dl~~~~~ 121 (189)
T cd04134 81 VDSPDSLENVES-KWLGEIREHCPGVKLVLVALKCDLREARN 121 (189)
T ss_pred CCCHHHHHHHHH-HHHHHHHHhCCCCCEEEEEEChhhccChh
Confidence 999999998864 79999988778999999999999987664
No 26
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=99.97 E-value=8.4e-30 Score=176.74 Aligned_cols=128 Identities=30% Similarity=0.552 Sum_probs=113.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEEEEe
Q 044772 23 IKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFS 102 (159)
Q Consensus 23 ~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d 102 (159)
+||+++|++|||||||++++..+.+...+.+|.+..+...+.+++..+.+.+||++|++.+..++..++++++++++|||
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d 81 (163)
T cd04136 2 YKVVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQIEVDGQQCMLEILDTAGTEQFTAMRDLYIKNGQGFVLVYS 81 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcccCCchhhhEEEEEEECCEEEEEEEEECCCccccchHHHHHhhcCCEEEEEEE
Confidence 79999999999999999999999998888888887777777888888999999999999999999999999999999999
Q ss_pred CCChhhHHhhhhhhHHHHHhhhC--CCCCEEEEeeCcccccCccccccCCCc
Q 044772 103 LISRPSYENISKKKWVPELRHYA--PSVPIVLVGTKLDLRKDRQFHLDYPGA 152 (159)
Q Consensus 103 ~~~~~s~~~~~~~~~~~~i~~~~--~~~piilv~nK~Dl~~~r~v~~~~~~~ 152 (159)
++++.+|..+. .|+..+.... ++.|+++|+||+|+.+.++++.+++..
T Consensus 82 ~~~~~s~~~~~--~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~ 131 (163)
T cd04136 82 ITSQSSFNDLQ--DLREQILRVKDTENVPMVLVGNKCDLEDERVVSREEGQA 131 (163)
T ss_pred CCCHHHHHHHH--HHHHHHHHhcCCCCCCEEEEEECccccccceecHHHHHH
Confidence 99999999988 8888887653 479999999999998777776654433
No 27
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=99.96 E-value=1.5e-29 Score=176.04 Aligned_cols=130 Identities=35% Similarity=0.614 Sum_probs=116.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeee-EEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEEEE
Q 044772 23 IKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNF-SANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAF 101 (159)
Q Consensus 23 ~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 101 (159)
+||+++|++|+|||||++++..+.+...+.++.+..+ ...+..++..+.+++||++|++.+...+..++.+++++++||
T Consensus 1 ~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (161)
T cd04117 1 FRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQERYQTITKQYYRRAQGIFLVY 80 (161)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCCcHhHHhhHHHHhcCCcEEEEEE
Confidence 4899999999999999999999999888888888766 456777888899999999999999999999999999999999
Q ss_pred eCCChhhHHhhhhhhHHHHHhhhC-CCCCEEEEeeCcccccCccccccCCCccc
Q 044772 102 SLISRPSYENISKKKWVPELRHYA-PSVPIVLVGTKLDLRKDRQFHLDYPGAYT 154 (159)
Q Consensus 102 d~~~~~s~~~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~r~v~~~~~~~~~ 154 (159)
|++++++|..+. .|++.+.... .+.|+++||||.|+.++|+++.++++.++
T Consensus 81 d~~~~~sf~~~~--~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~v~~~~~~~~~ 132 (161)
T cd04117 81 DISSERSYQHIM--KWVSDVDEYAPEGVQKILIGNKADEEQKRQVGDEQGNKLA 132 (161)
T ss_pred ECCCHHHHHHHH--HHHHHHHHhCCCCCeEEEEEECcccccccCCCHHHHHHHH
Confidence 999999999998 9999888766 47999999999999999988877766654
No 28
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=99.96 E-value=1.6e-29 Score=176.60 Aligned_cols=131 Identities=31% Similarity=0.622 Sum_probs=115.9
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeee-EEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEE
Q 044772 21 KFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNF-SANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL 99 (159)
Q Consensus 21 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~ 99 (159)
..+||+++|++|+|||||++++.+++|...+.++.+..+ ...+..++..+.+++||++|++.+...+..++++++++|+
T Consensus 2 ~~~ki~vvG~~~~GKSsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~ad~~i~ 81 (167)
T cd01867 2 YLFKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIIL 81 (167)
T ss_pred cceEEEEECCCCCCHHHHHHHHhhCcCCcccccCccceEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhCCCCEEEE
Confidence 468999999999999999999999999988889887666 3466778888999999999999999888999999999999
Q ss_pred EEeCCChhhHHhhhhhhHHHHHhhhC-CCCCEEEEeeCcccccCccccccCCCcc
Q 044772 100 AFSLISRPSYENISKKKWVPELRHYA-PSVPIVLVGTKLDLRKDRQFHLDYPGAY 153 (159)
Q Consensus 100 v~d~~~~~s~~~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~r~v~~~~~~~~ 153 (159)
|||++++++|..+. .|+..+.... .++|+++||||+|+.+.+++..++++.+
T Consensus 82 v~d~~~~~s~~~~~--~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~ 134 (167)
T cd01867 82 VYDITDEKSFENIR--NWMRNIEEHASEDVERMLVGNKCDMEEKRVVSKEEGEAL 134 (167)
T ss_pred EEECcCHHHHHhHH--HHHHHHHHhCCCCCcEEEEEECcccccccCCCHHHHHHH
Confidence 99999999999998 8999988765 5799999999999998887776665544
No 29
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=99.96 E-value=8.6e-30 Score=176.75 Aligned_cols=129 Identities=39% Similarity=0.800 Sum_probs=118.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeee-eEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEEEEe
Q 044772 24 KCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDN-FSANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFS 102 (159)
Q Consensus 24 ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d 102 (159)
||+++|++|||||||+++|.++.+...+.++.+.. +...+..++..+.+.+||++|++.+...+..++.+++++|+|||
T Consensus 1 Ki~vvG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ii~fd 80 (162)
T PF00071_consen 1 KIVVVGDSGVGKTSLINRLINGEFPENYIPTIGIDSYSKEVSIDGKPVNLEIWDTSGQERFDSLRDIFYRNSDAIIIVFD 80 (162)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSSTTSSSETTSSEEEEEEEEEETTEEEEEEEEEETTSGGGHHHHHHHHTTESEEEEEEE
T ss_pred CEEEECCCCCCHHHHHHHHHhhcccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 79999999999999999999999999999998444 46688889999999999999999999888899999999999999
Q ss_pred CCChhhHHhhhhhhHHHHHhhhCC-CCCEEEEeeCcccccCccccccCCCccc
Q 044772 103 LISRPSYENISKKKWVPELRHYAP-SVPIVLVGTKLDLRKDRQFHLDYPGAYT 154 (159)
Q Consensus 103 ~~~~~s~~~~~~~~~~~~i~~~~~-~~piilv~nK~Dl~~~r~v~~~~~~~~~ 154 (159)
++++++|..+. .|++.+....+ ++|++|+|||+|+.+.++++.+++++++
T Consensus 81 ~~~~~S~~~~~--~~~~~i~~~~~~~~~iivvg~K~D~~~~~~v~~~~~~~~~ 131 (162)
T PF00071_consen 81 VTDEESFENLK--KWLEEIQKYKPEDIPIIVVGNKSDLSDEREVSVEEAQEFA 131 (162)
T ss_dssp TTBHHHHHTHH--HHHHHHHHHSTTTSEEEEEEETTTGGGGSSSCHHHHHHHH
T ss_pred ccccccccccc--cccccccccccccccceeeeccccccccccchhhHHHHHH
Confidence 99999999999 99999999987 7999999999999999999988777665
No 30
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.96 E-value=2.3e-29 Score=181.01 Aligned_cols=130 Identities=28% Similarity=0.495 Sum_probs=113.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeee-EEEEEEC-CeEEEEEEEeCCCcccccccccccccCCcEEEEE
Q 044772 23 IKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNF-SANVMVD-GRTVNLGLWDTAGQEDYNRLRPLSYRGADVFILA 100 (159)
Q Consensus 23 ~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~-~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v 100 (159)
+||+++|++|||||||+++|+++.+...+.+|.+..+ ...+..+ +..+.+.+||++|++.+..++..++++++++|+|
T Consensus 1 ~KivivG~~~vGKTsli~~l~~~~~~~~~~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~a~~~ilv 80 (201)
T cd04107 1 LKVLVIGDLGVGKTSIIKRYVHGIFSQHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQERFGGMTRVYYRGAVGAIIV 80 (201)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCCCEEEEEEEECCCchhhhhhHHHHhCCCCEEEEE
Confidence 5899999999999999999999999888899988766 3456666 7789999999999999999999999999999999
Q ss_pred EeCCChhhHHhhhhhhHHHHHhhh-----CCCCCEEEEeeCcccccCccccccCCCccc
Q 044772 101 FSLISRPSYENISKKKWVPELRHY-----APSVPIVLVGTKLDLRKDRQFHLDYPGAYT 154 (159)
Q Consensus 101 ~d~~~~~s~~~~~~~~~~~~i~~~-----~~~~piilv~nK~Dl~~~r~v~~~~~~~~~ 154 (159)
||++++++|..+. .|+..+... ..++|++|||||+|+.+.+.++.++.++++
T Consensus 81 ~D~t~~~s~~~~~--~~~~~i~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~ 137 (201)
T cd04107 81 FDVTRPSTFEAVL--KWKADLDSKVTLPNGEPIPCLLLANKCDLKKRLAKDGEQMDQFC 137 (201)
T ss_pred EECCCHHHHHHHH--HHHHHHHHhhcccCCCCCcEEEEEECCCcccccccCHHHHHHHH
Confidence 9999999999998 898877653 257899999999999877777776655543
No 31
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=99.96 E-value=2.3e-29 Score=174.85 Aligned_cols=129 Identities=30% Similarity=0.527 Sum_probs=112.8
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEEEE
Q 044772 22 FIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAF 101 (159)
Q Consensus 22 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 101 (159)
.+||+++|++|||||||+++++.+.+...+.++.+..+...+..++..+.+++||++|++.|..++..++++++++++||
T Consensus 1 ~~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~i~v~ 80 (163)
T cd04176 1 EYKVVVLGSGGVGKSALTVQFVSGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFIVVY 80 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCchhheEEEEEEECCEEEEEEEEECCCcccccchHHHHHhhCCEEEEEE
Confidence 37999999999999999999999999888888877666667778888889999999999999999999999999999999
Q ss_pred eCCChhhHHhhhhhhHHHHHhhhC--CCCCEEEEeeCcccccCccccccCCCc
Q 044772 102 SLISRPSYENISKKKWVPELRHYA--PSVPIVLVGTKLDLRKDRQFHLDYPGA 152 (159)
Q Consensus 102 d~~~~~s~~~~~~~~~~~~i~~~~--~~~piilv~nK~Dl~~~r~v~~~~~~~ 152 (159)
|++++++|..+. .|+..+.... .++|+++|+||+|+..++.+..+++..
T Consensus 81 d~~~~~s~~~~~--~~~~~~~~~~~~~~~piviv~nK~Dl~~~~~~~~~~~~~ 131 (163)
T cd04176 81 SLVNQQTFQDIK--PMRDQIVRVKGYEKVPIILVGNKVDLESEREVSSAEGRA 131 (163)
T ss_pred ECCCHHHHHHHH--HHHHHHHHhcCCCCCCEEEEEECccchhcCccCHHHHHH
Confidence 999999999998 8888887654 589999999999998776666544433
No 32
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=99.96 E-value=1.8e-29 Score=175.60 Aligned_cols=129 Identities=28% Similarity=0.523 Sum_probs=114.1
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEEEE
Q 044772 22 FIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAF 101 (159)
Q Consensus 22 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 101 (159)
++||+++|.+|||||||+++++.+.+...+.+|.+..+...+.+++..+.+++||++|++.+..++..++++++++++||
T Consensus 1 ~~ki~~~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 80 (164)
T cd04175 1 EYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFVLVY 80 (164)
T ss_pred CcEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheEEEEEEECCEEEEEEEEECCCcccchhHHHHHHhhCCEEEEEE
Confidence 37999999999999999999999988888888988877777788888899999999999999999999999999999999
Q ss_pred eCCChhhHHhhhhhhHHHHHhhhC--CCCCEEEEeeCcccccCccccccCCCc
Q 044772 102 SLISRPSYENISKKKWVPELRHYA--PSVPIVLVGTKLDLRKDRQFHLDYPGA 152 (159)
Q Consensus 102 d~~~~~s~~~~~~~~~~~~i~~~~--~~~piilv~nK~Dl~~~r~v~~~~~~~ 152 (159)
|++++.+|..+. .|+..+.... ++.|++||+||+|+...+.++.++++.
T Consensus 81 d~~~~~s~~~~~--~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~ 131 (164)
T cd04175 81 SITAQSTFNDLQ--DLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQN 131 (164)
T ss_pred ECCCHHHHHHHH--HHHHHHHHhcCCCCCCEEEEEECCcchhccEEcHHHHHH
Confidence 999999999998 8888877543 689999999999998877776554443
No 33
>PTZ00369 Ras-like protein; Provisional
Probab=99.96 E-value=3.2e-29 Score=178.67 Aligned_cols=130 Identities=34% Similarity=0.546 Sum_probs=115.9
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEEE
Q 044772 21 KFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADVFILA 100 (159)
Q Consensus 21 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v 100 (159)
..+||+++|++|||||||++++..+.+...+.+|.+..+...+.+++..+.+++||++|++.+..++..++++++++++|
T Consensus 4 ~~~Ki~iiG~~~~GKTsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~iilv 83 (189)
T PTZ00369 4 TEYKLVVVGGGGVGKSALTIQFIQNHFIDEYDPTIEDSYRKQCVIDEETCLLDILDTAGQEEYSAMRDQYMRTGQGFLCV 83 (189)
T ss_pred cceEEEEECCCCCCHHHHHHHHhcCCCCcCcCCchhhEEEEEEEECCEEEEEEEEeCCCCccchhhHHHHhhcCCEEEEE
Confidence 46899999999999999999999999988888998888877778888889999999999999999999999999999999
Q ss_pred EeCCChhhHHhhhhhhHHHHHhhhC--CCCCEEEEeeCcccccCccccccCCCc
Q 044772 101 FSLISRPSYENISKKKWVPELRHYA--PSVPIVLVGTKLDLRKDRQFHLDYPGA 152 (159)
Q Consensus 101 ~d~~~~~s~~~~~~~~~~~~i~~~~--~~~piilv~nK~Dl~~~r~v~~~~~~~ 152 (159)
||++++++|..+. .|+..+.... +++|+++|+||+|+.+.+.+..+++..
T Consensus 84 ~D~s~~~s~~~~~--~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~i~~~~~~~ 135 (189)
T PTZ00369 84 YSITSRSSFEEIA--SFREQILRVKDKDRVPMILVGNKCDLDSERQVSTGEGQE 135 (189)
T ss_pred EECCCHHHHHHHH--HHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHH
Confidence 9999999999998 8888887654 488999999999998877777554443
No 34
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=99.96 E-value=4.3e-29 Score=175.22 Aligned_cols=118 Identities=68% Similarity=1.207 Sum_probs=107.9
Q ss_pred EEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEEEEeCC
Q 044772 25 CVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLI 104 (159)
Q Consensus 25 i~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~ 104 (159)
|+++|++|||||||++++.++.+...+.++....+...+.+++..+.+.+||++|++.+..++..++++++++|+|||++
T Consensus 1 i~i~G~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~ 80 (174)
T smart00174 1 LVVVGDGAVGKTCLLISYTTNAFPEDYVPTVFENYSADVEVDGKPVELGLWDTAGQEDYDRLRPLSYPDTDVFLICFSVD 80 (174)
T ss_pred CEEECCCCCCHHHHHHHHHhCCCCCCCCCcEEeeeeEEEEECCEEEEEEEEECCCCcccchhchhhcCCCCEEEEEEECC
Confidence 58999999999999999999999888889988888777788888899999999999999999999999999999999999
Q ss_pred ChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCcccccCc
Q 044772 105 SRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKDR 143 (159)
Q Consensus 105 ~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~r 143 (159)
++++|..+.. .|+..+....++.|++|||||+|+..++
T Consensus 81 ~~~s~~~~~~-~~~~~i~~~~~~~piilv~nK~Dl~~~~ 118 (174)
T smart00174 81 SPASFENVKE-KWYPEVKHFCPNTPIILVGTKLDLREDK 118 (174)
T ss_pred CHHHHHHHHH-HHHHHHHhhCCCCCEEEEecChhhhhCh
Confidence 9999999864 7999998877899999999999997643
No 35
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=99.96 E-value=6.4e-29 Score=174.59 Aligned_cols=131 Identities=53% Similarity=0.978 Sum_probs=114.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEEEEe
Q 044772 23 IKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFS 102 (159)
Q Consensus 23 ~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d 102 (159)
+||+++|++|+|||||+.++..+.+...+.+|..+.+...+.+++..+.+++||++|++.+...+..++++++++|+|||
T Consensus 1 ~k~~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~a~~~i~v~d 80 (173)
T cd04130 1 LKCVLVGDGAVGKTSLIVSYTTNGYPTEYVPTAFDNFSVVVLVDGKPVRLQLCDTAGQDEFDKLRPLCYPDTDVFLLCFS 80 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEEEEECCEEEEEEEEECCCChhhccccccccCCCcEEEEEEE
Confidence 58999999999999999999999999899999877777777888888999999999999999999999999999999999
Q ss_pred CCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCccccc------------CccccccCCCccc
Q 044772 103 LISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRK------------DRQFHLDYPGAYT 154 (159)
Q Consensus 103 ~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~------------~r~v~~~~~~~~~ 154 (159)
++++++|+.+.. .|+..+....++.|+++|+||+|+.. +|.|..+++..||
T Consensus 81 ~~~~~sf~~~~~-~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~a 143 (173)
T cd04130 81 VVNPSSFQNISE-KWIPEIRKHNPKAPIILVGTQADLRTDVNVLIQLARYGEKPVSQSRAKALA 143 (173)
T ss_pred CCCHHHHHHHHH-HHHHHHHhhCCCCCEEEEeeChhhccChhHHHHHhhcCCCCcCHHHHHHHH
Confidence 999999999865 79988887667899999999999964 4556655554443
No 36
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=99.96 E-value=6.3e-29 Score=178.71 Aligned_cols=124 Identities=25% Similarity=0.378 Sum_probs=108.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeeeE-EEEEEC-----CeEEEEEEEeCCCcccccccccccccCCcE
Q 044772 23 IKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFS-ANVMVD-----GRTVNLGLWDTAGQEDYNRLRPLSYRGADV 96 (159)
Q Consensus 23 ~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~-----~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ 96 (159)
+||+++|++|||||||++++..+.|...+.+|.+..+. +.+.++ +..+.+++||++|++.+..++..+++++++
T Consensus 1 vKIvlvGd~gVGKTSLi~~~~~~~f~~~~~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e~~~~l~~~~yr~ad~ 80 (202)
T cd04102 1 VRVLVVGDSGVGKSSLVHLICKNQVLGRPSWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSESVKSTRAVFYNQVNG 80 (202)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCchhHHHHHHHHhCcCCE
Confidence 58999999999999999999999999888999886553 344443 467899999999999999999999999999
Q ss_pred EEEEEeCCChhhHHhhhhhhHHHHHhhh--------------------CCCCCEEEEeeCcccccCcccccc
Q 044772 97 FILAFSLISRPSYENISKKKWVPELRHY--------------------APSVPIVLVGTKLDLRKDRQFHLD 148 (159)
Q Consensus 97 ~i~v~d~~~~~s~~~~~~~~~~~~i~~~--------------------~~~~piilv~nK~Dl~~~r~v~~~ 148 (159)
+|+|||++++.+|+.+. .|+..+... ..++|++|||||+|+.+.|.++.+
T Consensus 81 iIlVyDvtn~~Sf~~l~--~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGnK~Dl~~~r~~~~~ 150 (202)
T cd04102 81 IILVHDLTNRKSSQNLQ--RWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQIPEKESSGN 150 (202)
T ss_pred EEEEEECcChHHHHHHH--HHHHHHHHhhccccccccccccccccccCCCCceEEEEEECccchhhcccchH
Confidence 99999999999999998 999998753 136899999999999888876654
No 37
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=99.96 E-value=6e-29 Score=173.43 Aligned_cols=127 Identities=31% Similarity=0.634 Sum_probs=111.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeeeE-EEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEEEE
Q 044772 23 IKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFS-ANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAF 101 (159)
Q Consensus 23 ~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 101 (159)
+||+++|++|||||||+++|.++++...+.++.+..+. ..+..++..+.+.+||++|++.+...+..++++++++++||
T Consensus 2 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~g~~~~~~~~~~~~~~~~~~l~v~ 81 (165)
T cd01865 2 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRNDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMY 81 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHccCCcEEEEEE
Confidence 79999999999999999999999998888888876553 35566777889999999999999999999999999999999
Q ss_pred eCCChhhHHhhhhhhHHHHHhhhC-CCCCEEEEeeCcccccCccccccCCC
Q 044772 102 SLISRPSYENISKKKWVPELRHYA-PSVPIVLVGTKLDLRKDRQFHLDYPG 151 (159)
Q Consensus 102 d~~~~~s~~~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~r~v~~~~~~ 151 (159)
|++++++|..+. .|+..+.... .+.|+++|+||+|+.+.+.+..++++
T Consensus 82 d~~~~~s~~~~~--~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~ 130 (165)
T cd01865 82 DITNEESFNAVQ--DWSTQIKTYSWDNAQVILVGNKCDMEDERVVSSERGR 130 (165)
T ss_pred ECCCHHHHHHHH--HHHHHHHHhCCCCCCEEEEEECcccCcccccCHHHHH
Confidence 999999999998 9999998766 57999999999999887777655443
No 38
>PLN00023 GTP-binding protein; Provisional
Probab=99.96 E-value=7.6e-29 Score=187.26 Aligned_cols=138 Identities=21% Similarity=0.334 Sum_probs=117.0
Q ss_pred CCCcceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeee-EEEEEEC-------------CeEEEEEEEeCCCcc
Q 044772 16 TTTATKFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNF-SANVMVD-------------GRTVNLGLWDTAGQE 81 (159)
Q Consensus 16 ~~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~-------------~~~~~~~i~D~~g~~ 81 (159)
...+...+||+|+|+.|||||||+++|+.+.+...+.+|++..+ .+.+.++ +..+.++|||++|++
T Consensus 15 ~~~~~~~iKIVLLGdsGVGKTSLI~rf~~g~F~~~~~pTIG~d~~ik~I~~~~~~~~~~~ik~d~~k~v~LqIWDTAGqE 94 (334)
T PLN00023 15 GGPPCGQVRVLVVGDSGVGKSSLVHLIVKGSSIARPPQTIGCTVGVKHITYGSPGSSSNSIKGDSERDFFVELWDVSGHE 94 (334)
T ss_pred cCCCccceEEEEECCCCCcHHHHHHHHhcCCcccccCCceeeeEEEEEEEECCcccccccccccCCceEEEEEEECCCCh
Confidence 44567779999999999999999999999999888899998766 3445543 246889999999999
Q ss_pred cccccccccccCCcEEEEEEeCCChhhHHhhhhhhHHHHHhhhC-------------CCCCEEEEeeCcccccCc---c-
Q 044772 82 DYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYA-------------PSVPIVLVGTKLDLRKDR---Q- 144 (159)
Q Consensus 82 ~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~-------------~~~piilv~nK~Dl~~~r---~- 144 (159)
.|..++..++++++++|+|||++++.+|..+. .|+..+.... .++|++|||||+||..++ +
T Consensus 95 rfrsL~~~yyr~AdgiILVyDITdr~SFenL~--kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK~DL~~~~~~r~~ 172 (334)
T PLN00023 95 RYKDCRSLFYSQINGVIFVHDLSQRRTKTSLQ--KWASEVAATGTFSAPLGSGGPGGLPVPYIVIGNKADIAPKEGTRGS 172 (334)
T ss_pred hhhhhhHHhccCCCEEEEEEeCCCHHHHHHHH--HHHHHHHHhcccccccccccccCCCCcEEEEEECcccccccccccc
Confidence 99999999999999999999999999999998 9999998753 258999999999997653 3
Q ss_pred --ccccCCCcccc
Q 044772 145 --FHLDYPGAYTI 155 (159)
Q Consensus 145 --v~~~~~~~~~~ 155 (159)
+..++++.||.
T Consensus 173 s~~~~e~a~~~A~ 185 (334)
T PLN00023 173 SGNLVDAARQWVE 185 (334)
T ss_pred ccccHHHHHHHHH
Confidence 35677777764
No 39
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=99.96 E-value=7.2e-29 Score=172.95 Aligned_cols=130 Identities=32% Similarity=0.692 Sum_probs=114.2
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeee-EEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEEE
Q 044772 22 FIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNF-SANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADVFILA 100 (159)
Q Consensus 22 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v 100 (159)
.+||+++|++|||||||++++.++.+...+.++.+..+ ...+.+++..+.+++||++|++.+...+..++++++++|+|
T Consensus 2 ~~ki~i~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v 81 (166)
T cd01869 2 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIV 81 (166)
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhCcCCEEEEE
Confidence 47999999999999999999999998888888877655 44667788889999999999999998989999999999999
Q ss_pred EeCCChhhHHhhhhhhHHHHHhhhC-CCCCEEEEeeCcccccCccccccCCCcc
Q 044772 101 FSLISRPSYENISKKKWVPELRHYA-PSVPIVLVGTKLDLRKDRQFHLDYPGAY 153 (159)
Q Consensus 101 ~d~~~~~s~~~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~r~v~~~~~~~~ 153 (159)
||++++++|..+. .|+..+.... ++.|+++|+||+|+.+.+.+..++++.+
T Consensus 82 ~d~~~~~s~~~l~--~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~ 133 (166)
T cd01869 82 YDVTDQESFNNVK--QWLQEIDRYASENVNKLLVGNKCDLTDKRVVDYSEAQEF 133 (166)
T ss_pred EECcCHHHHHhHH--HHHHHHHHhCCCCCcEEEEEEChhcccccCCCHHHHHHH
Confidence 9999999999998 8999988776 5799999999999988887776655444
No 40
>KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only]
Probab=99.96 E-value=4e-30 Score=173.35 Aligned_cols=140 Identities=33% Similarity=0.608 Sum_probs=126.5
Q ss_pred CCCCcceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeee-EEEEEECCeEEEEEEEeCCCcccccccccccccC
Q 044772 15 TTTTATKFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNF-SANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRG 93 (159)
Q Consensus 15 ~~~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~ 93 (159)
....+...+|++++|..=||||||+.|++.++|......|.--.| .+.+.+.+....+.|||+.|+++|...-+-||++
T Consensus 6 ~~~g~s~~FK~VLLGEGCVGKtSLVLRy~EnkFn~kHlsTlQASF~~kk~n~ed~ra~L~IWDTAGQErfHALGPIYYRg 85 (218)
T KOG0088|consen 6 NVDGKSFKFKIVLLGEGCVGKTSLVLRYVENKFNCKHLSTLQASFQNKKVNVEDCRADLHIWDTAGQERFHALGPIYYRG 85 (218)
T ss_pred cccCCceeeEEEEEcCCccchhHHHHHHHHhhcchhhHHHHHHHHhhcccccccceeeeeeeeccchHhhhccCceEEeC
Confidence 334567889999999999999999999999999988777775555 5567778888999999999999999999999999
Q ss_pred CcEEEEEEeCCChhhHHhhhhhhHHHHHhhhC-CCCCEEEEeeCcccccCccccccCCCccccc
Q 044772 94 ADVFILAFSLISRPSYENISKKKWVPELRHYA-PSVPIVLVGTKLDLRKDRQFHLDYPGAYTIS 156 (159)
Q Consensus 94 ~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~r~v~~~~~~~~~~~ 156 (159)
++++++|||++|+++|+.++ .|..+++... ..+-+++||||+||+++|+|+..++++||.|
T Consensus 86 SnGalLVyDITDrdSFqKVK--nWV~Elr~mlGnei~l~IVGNKiDLEeeR~Vt~qeAe~YAes 147 (218)
T KOG0088|consen 86 SNGALLVYDITDRDSFQKVK--NWVLELRTMLGNEIELLIVGNKIDLEEERQVTRQEAEAYAES 147 (218)
T ss_pred CCceEEEEeccchHHHHHHH--HHHHHHHHHhCCeeEEEEecCcccHHHhhhhhHHHHHHHHHh
Confidence 99999999999999999999 9999999876 4788999999999999999999999999976
No 41
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=99.96 E-value=6.3e-29 Score=172.29 Aligned_cols=129 Identities=34% Similarity=0.602 Sum_probs=113.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeee-EEEEEEC--CeEEEEEEEeCCCcccccccccccccCCcEEEE
Q 044772 23 IKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNF-SANVMVD--GRTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL 99 (159)
Q Consensus 23 ~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~--~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~ 99 (159)
+||+++|++|+|||||++++.++.+...+.++.+..+ ...+.+. +..+++++||++|++.+...+..++++++++++
T Consensus 1 ~kv~~vG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~v~ 80 (162)
T cd04106 1 IKVIVVGNGNVGKSSMIQRFVKGIFTKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQEEFDAITKAYYRGAQACIL 80 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCchHHHHHhHHHHhcCCCEEEE
Confidence 4899999999999999999999999888888887766 3455555 677899999999999999999999999999999
Q ss_pred EEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCcccccCccccccCCCcc
Q 044772 100 AFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKDRQFHLDYPGAY 153 (159)
Q Consensus 100 v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~r~v~~~~~~~~ 153 (159)
|||++++++|..+. .|+..+.....++|+++|+||+|+..++.++.++++.+
T Consensus 81 v~d~~~~~s~~~l~--~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~v~~~~~~~~ 132 (162)
T cd04106 81 VFSTTDRESFEAIE--SWKEKVEAECGDIPMVLVQTKIDLLDQAVITNEEAEAL 132 (162)
T ss_pred EEECCCHHHHHHHH--HHHHHHHHhCCCCCEEEEEEChhcccccCCCHHHHHHH
Confidence 99999999999988 99999887778999999999999988888776654443
No 42
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=99.96 E-value=8.3e-29 Score=172.72 Aligned_cols=128 Identities=27% Similarity=0.466 Sum_probs=111.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEEEEe
Q 044772 23 IKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFS 102 (159)
Q Consensus 23 ~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d 102 (159)
+||+++|++|||||||+++++++.+...+.++.+..+......+...+.+.+||++|++.+..++..++..++++|+|||
T Consensus 2 ~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d 81 (165)
T cd04140 2 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCSKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVYS 81 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCCcCCcchheEEEEEEECCEEEEEEEEECCCCCcchHHHHHHhhcCCEEEEEEE
Confidence 79999999999999999999999998888898887777666777788899999999999999888889999999999999
Q ss_pred CCChhhHHhhhhhhHHHHHhhhC----CCCCEEEEeeCcccccCccccccCCCc
Q 044772 103 LISRPSYENISKKKWVPELRHYA----PSVPIVLVGTKLDLRKDRQFHLDYPGA 152 (159)
Q Consensus 103 ~~~~~s~~~~~~~~~~~~i~~~~----~~~piilv~nK~Dl~~~r~v~~~~~~~ 152 (159)
++++++|..+. .|+..+.... +++|++||+||+|+...+.+..+++..
T Consensus 82 ~~~~~s~~~~~--~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~ 133 (165)
T cd04140 82 VTSKQSLEELK--PIYELICEIKGNNIEKIPIMLVGNKCDESHKREVSSNEGAA 133 (165)
T ss_pred CCCHHHHHHHH--HHHHHHHHHhcCCCCCCCEEEEEECccccccCeecHHHHHH
Confidence 99999999998 7877776543 579999999999998877777655443
No 43
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.96 E-value=3.6e-29 Score=178.54 Aligned_cols=128 Identities=37% Similarity=0.590 Sum_probs=112.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEEEEeC
Q 044772 24 KCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSL 103 (159)
Q Consensus 24 ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~ 103 (159)
||+++|.+|||||||+++|..+.|...+.++.+..+...+..++..+.+.+||++|++.+..++..++++++++|+|||+
T Consensus 1 ki~ivG~~~vGKTsli~~l~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~ 80 (190)
T cd04144 1 KLVVLGDGGVGKTALTIQLCLNHFVETYDPTIEDSYRKQVVVDGQPCMLEVLDTAGQEEYTALRDQWIREGEGFILVYSI 80 (190)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCCCchHhhEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHHhCCEEEEEEEC
Confidence 68999999999999999999999988888988877766677888888999999999999999999999999999999999
Q ss_pred CChhhHHhhhhhhHHHHHhhhC----CCCCEEEEeeCcccccCccccccCCCcc
Q 044772 104 ISRPSYENISKKKWVPELRHYA----PSVPIVLVGTKLDLRKDRQFHLDYPGAY 153 (159)
Q Consensus 104 ~~~~s~~~~~~~~~~~~i~~~~----~~~piilv~nK~Dl~~~r~v~~~~~~~~ 153 (159)
+++.+|..+. .|+..+.... .+.|++|||||+|+...+.++.+++..+
T Consensus 81 ~~~~s~~~~~--~~~~~i~~~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~ 132 (190)
T cd04144 81 TSRSTFERVE--RFREQIQRVKDESAADVPIMIVGNKCDKVYEREVSTEEGAAL 132 (190)
T ss_pred CCHHHHHHHH--HHHHHHHHHhcccCCCCCEEEEEEChhccccCccCHHHHHHH
Confidence 9999999998 8888776553 4789999999999988888876655443
No 44
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=99.96 E-value=7.8e-29 Score=174.85 Aligned_cols=132 Identities=36% Similarity=0.610 Sum_probs=113.3
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeeeE-EEEEEC----------CeEEEEEEEeCCCcccccccccc
Q 044772 21 KFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFS-ANVMVD----------GRTVNLGLWDTAGQEDYNRLRPL 89 (159)
Q Consensus 21 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~----------~~~~~~~i~D~~g~~~~~~~~~~ 89 (159)
..+||+++|++|||||||++++..+.+...+.++.+..+. ..+.+. +..+.+.+||++|++.+...+..
T Consensus 3 ~~~ki~ivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~ 82 (180)
T cd04127 3 YLIKFLALGDSGVGKTSFLYQYTDNKFNPKFITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQERFRSLTTA 82 (180)
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCChHHHHHHHHH
Confidence 4689999999999999999999999999888888876653 334333 45688999999999999999999
Q ss_pred cccCCcEEEEEEeCCChhhHHhhhhhhHHHHHhhhC--CCCCEEEEeeCcccccCccccccCCCccc
Q 044772 90 SYRGADVFILAFSLISRPSYENISKKKWVPELRHYA--PSVPIVLVGTKLDLRKDRQFHLDYPGAYT 154 (159)
Q Consensus 90 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~--~~~piilv~nK~Dl~~~r~v~~~~~~~~~ 154 (159)
++++++++++|||++++++|..+. .|+..+.... +++|+++||||+|+.+.+.++.+++..++
T Consensus 83 ~~~~~~~~i~v~d~~~~~s~~~~~--~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~v~~~~~~~~~ 147 (180)
T cd04127 83 FFRDAMGFLLIFDLTNEQSFLNVR--NWMSQLQTHAYCENPDIVLCGNKADLEDQRQVSEEQAKALA 147 (180)
T ss_pred HhCCCCEEEEEEECCCHHHHHHHH--HHHHHHHHhcCCCCCcEEEEEeCccchhcCccCHHHHHHHH
Confidence 999999999999999999999998 9999887654 57899999999999888888776655443
No 45
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.96 E-value=9.7e-29 Score=175.51 Aligned_cols=120 Identities=52% Similarity=1.008 Sum_probs=106.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeeeEEEEEEC-CeEEEEEEEeCCCcccccccccccccCCcEEEEEE
Q 044772 23 IKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVD-GRTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAF 101 (159)
Q Consensus 23 ~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 101 (159)
+||+++|++|||||||+++|.++.+...+.++.+..+...+... +..+.+.+||++|++.+...+..+++++|++|+||
T Consensus 1 ~ki~vvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~v~ 80 (187)
T cd04132 1 KKIVVVGDGGCGKTCLLIVYSQGKFPEEYVPTVFENYVTNIQGPNGKIIELALWDTAGQEEYDRLRPLSYPDVDVLLICY 80 (187)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCCCCCeeeeeeEEEEEecCCcEEEEEEEECCCchhHHHHHHHhCCCCCEEEEEE
Confidence 58999999999999999999999998888898887776556665 67889999999999999989889999999999999
Q ss_pred eCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCcccccCc
Q 044772 102 SLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKDR 143 (159)
Q Consensus 102 d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~r 143 (159)
|++++++|..+.. .|+..+....++.|+++||||+|+...+
T Consensus 81 d~~~~~s~~~~~~-~~~~~~~~~~~~~piilv~nK~Dl~~~~ 121 (187)
T cd04132 81 AVDNPTSLDNVED-KWFPEVNHFCPGTPIMLVGLKTDLRKDK 121 (187)
T ss_pred ECCCHHHHHHHHH-HHHHHHHHhCCCCCEEEEEeChhhhhCc
Confidence 9999999999864 7998887777789999999999997543
No 46
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=99.96 E-value=1.4e-28 Score=176.76 Aligned_cols=130 Identities=30% Similarity=0.563 Sum_probs=114.6
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeee-EEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEE
Q 044772 21 KFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNF-SANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL 99 (159)
Q Consensus 21 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~ 99 (159)
..+||+++|++|||||||+++|.++.+...+.+|.+..+ ...+..++..+.+.+||++|++.+...+..++.+++++++
T Consensus 5 ~~~kivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~a~~iil 84 (199)
T cd04110 5 HLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGERVKLQIWDTAGQERFRTITSTYYRGTHGVIV 84 (199)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcCCCCCCcCccccceeEEEEEEECCEEEEEEEEeCCCchhHHHHHHHHhCCCcEEEE
Confidence 468999999999999999999999999888888887655 3466677878899999999999999999999999999999
Q ss_pred EEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCcccccCccccccCCCc
Q 044772 100 AFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKDRQFHLDYPGA 152 (159)
Q Consensus 100 v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~r~v~~~~~~~ 152 (159)
|||++++++|..+. .|+..+....+..|++|||||+|+.+.+.++.+++..
T Consensus 85 v~D~~~~~s~~~~~--~~~~~i~~~~~~~piivVgNK~Dl~~~~~~~~~~~~~ 135 (199)
T cd04110 85 VYDVTNGESFVNVK--RWLQEIEQNCDDVCKVLVGNKNDDPERKVVETEDAYK 135 (199)
T ss_pred EEECCCHHHHHHHH--HHHHHHHHhCCCCCEEEEEECcccccccccCHHHHHH
Confidence 99999999999998 9999998877889999999999998877776555443
No 47
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=99.96 E-value=1.2e-28 Score=172.67 Aligned_cols=131 Identities=30% Similarity=0.599 Sum_probs=114.3
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeee-EEEEEECCeEEEEEEEeCCCccccc-ccccccccCCcEEEE
Q 044772 22 FIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNF-SANVMVDGRTVNLGLWDTAGQEDYN-RLRPLSYRGADVFIL 99 (159)
Q Consensus 22 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~-~~~~~~~~~~~~~i~ 99 (159)
.+||+++|++|||||||+++++.+.+...+.++.+..+ ...+.+++..+.+.+||++|++.+. .++..+++++|++++
T Consensus 2 ~~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~d~~i~ 81 (170)
T cd04115 2 IFKIIVIGDSNVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEIDGERIKVQLWDTAGQERFRKSMVQHYYRNVHAVVF 81 (170)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCCccccceeEEEEEEEEEECCeEEEEEEEeCCChHHHHHhhHHHhhcCCCEEEE
Confidence 58999999999999999999999998888888877655 4466778888999999999998886 478889999999999
Q ss_pred EEeCCChhhHHhhhhhhHHHHHhhhC--CCCCEEEEeeCcccccCccccccCCCccc
Q 044772 100 AFSLISRPSYENISKKKWVPELRHYA--PSVPIVLVGTKLDLRKDRQFHLDYPGAYT 154 (159)
Q Consensus 100 v~d~~~~~s~~~~~~~~~~~~i~~~~--~~~piilv~nK~Dl~~~r~v~~~~~~~~~ 154 (159)
|||++++++|..+. .|+..+.... .++|+++|+||+|+.+.++++.+++.+++
T Consensus 82 v~d~~~~~s~~~~~--~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~ 136 (170)
T cd04115 82 VYDVTNMASFHSLP--SWIEECEQHSLPNEVPRILVGNKCDLREQIQVPTDLAQRFA 136 (170)
T ss_pred EEECCCHHHHHhHH--HHHHHHHHhcCCCCCCEEEEEECccchhhcCCCHHHHHHHH
Confidence 99999999999998 9999888765 57999999999999998888877665554
No 48
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.96 E-value=1.7e-28 Score=170.91 Aligned_cols=130 Identities=30% Similarity=0.616 Sum_probs=112.3
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeee-EEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEE
Q 044772 21 KFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNF-SANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL 99 (159)
Q Consensus 21 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~ 99 (159)
..+||+++|++|+|||||++++..+.+...+.++.+..+ ...+.+++..+.+++||++|++.+...+..++++++++++
T Consensus 2 ~~~kv~vvG~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~ll 81 (165)
T cd01864 2 FLFKIILIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIEGKRVKLQIWDTAGQERFRTITQSYYRSANGAII 81 (165)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhhCCCcccCCCccceEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEE
Confidence 468999999999999999999999998887777776554 4566778877899999999999999999999999999999
Q ss_pred EEeCCChhhHHhhhhhhHHHHHhhhC-CCCCEEEEeeCcccccCccccccCCCc
Q 044772 100 AFSLISRPSYENISKKKWVPELRHYA-PSVPIVLVGTKLDLRKDRQFHLDYPGA 152 (159)
Q Consensus 100 v~d~~~~~s~~~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~r~v~~~~~~~ 152 (159)
|||++++++|..+. .|+..+.... .++|+++|+||+|+.+.+.+..++++.
T Consensus 82 v~d~~~~~s~~~~~--~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~ 133 (165)
T cd01864 82 AYDITRRSSFESVP--HWIEEVEKYGASNVVLLLIGNKCDLEEQREVLFEEACT 133 (165)
T ss_pred EEECcCHHHHHhHH--HHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHH
Confidence 99999999999988 9999988764 589999999999998877666554433
No 49
>KOG0395 consensus Ras-related GTPase [General function prediction only]
Probab=99.96 E-value=3.8e-29 Score=178.87 Aligned_cols=133 Identities=35% Similarity=0.573 Sum_probs=123.4
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEEE
Q 044772 21 KFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADVFILA 100 (159)
Q Consensus 21 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v 100 (159)
..+|++++|.+|||||+|..+|..+.|...|.||+++.|.+.+.+++..+.+.|+|++|++.+..+...++.+.+++++|
T Consensus 2 ~~~kvvvlG~~gVGKSal~~qf~~~~f~~~y~ptied~y~k~~~v~~~~~~l~ilDt~g~~~~~~~~~~~~~~~~gF~lV 81 (196)
T KOG0395|consen 2 REYKVVVLGAGGVGKSALTIQFLTGRFVEDYDPTIEDSYRKELTVDGEVCMLEILDTAGQEEFSAMRDLYIRNGDGFLLV 81 (196)
T ss_pred CceEEEEECCCCCCcchheeeecccccccccCCCccccceEEEEECCEEEEEEEEcCCCcccChHHHHHhhccCcEEEEE
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeCCChhhHHhhhhhhHHHHHhhhC--CCCCEEEEeeCcccccCccccccCCCcccc
Q 044772 101 FSLISRPSYENISKKKWVPELRHYA--PSVPIVLVGTKLDLRKDRQFHLDYPGAYTI 155 (159)
Q Consensus 101 ~d~~~~~s~~~~~~~~~~~~i~~~~--~~~piilv~nK~Dl~~~r~v~~~~~~~~~~ 155 (159)
|+++++.||+.+. .+.+.|.+.. .++|+++||||+|+...|+|+.++++++|.
T Consensus 82 ysitd~~SF~~~~--~l~~~I~r~~~~~~~PivlVGNK~Dl~~~R~V~~eeg~~la~ 136 (196)
T KOG0395|consen 82 YSITDRSSFEEAK--QLREQILRVKGRDDVPIILVGNKCDLERERQVSEEEGKALAR 136 (196)
T ss_pred EECCCHHHHHHHH--HHHHHHHHhhCcCCCCEEEEEEcccchhccccCHHHHHHHHH
Confidence 9999999999999 7888884433 478999999999999999999999777653
No 50
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=99.96 E-value=1.2e-28 Score=171.24 Aligned_cols=128 Identities=34% Similarity=0.588 Sum_probs=112.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEEEEe
Q 044772 23 IKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFS 102 (159)
Q Consensus 23 ~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d 102 (159)
+||+++|++|||||||+++++++.+...+.++.+..+......++..+.+.+||++|++.+..++..++++++++++|||
T Consensus 1 ~ki~v~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d 80 (164)
T smart00173 1 YKLVVLGSGGVGKSALTIQFVQGHFVDDYDPTIEDSYRKQIEIDGEVCLLDILDTAGQEEFSAMRDQYMRTGEGFLLVYS 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCcccCCchhhhEEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhCCEEEEEEE
Confidence 58999999999999999999999998888888887777777788888999999999999999999999999999999999
Q ss_pred CCChhhHHhhhhhhHHHHHhhhC--CCCCEEEEeeCcccccCccccccCCCc
Q 044772 103 LISRPSYENISKKKWVPELRHYA--PSVPIVLVGTKLDLRKDRQFHLDYPGA 152 (159)
Q Consensus 103 ~~~~~s~~~~~~~~~~~~i~~~~--~~~piilv~nK~Dl~~~r~v~~~~~~~ 152 (159)
++++++|..+. .|...+.+.. .+.|+++|+||+|+...+.++.++...
T Consensus 81 ~~~~~s~~~~~--~~~~~i~~~~~~~~~pii~v~nK~Dl~~~~~~~~~~~~~ 130 (164)
T smart00173 81 ITDRQSFEEIK--KFREQILRVKDRDDVPIVLVGNKCDLESERVVSTEEGKE 130 (164)
T ss_pred CCCHHHHHHHH--HHHHHHHHhcCCCCCCEEEEEECccccccceEcHHHHHH
Confidence 99999999998 7877776543 378999999999998877776555433
No 51
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=99.96 E-value=1.5e-28 Score=170.91 Aligned_cols=129 Identities=25% Similarity=0.561 Sum_probs=112.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeee-EEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEEEE
Q 044772 23 IKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNF-SANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAF 101 (159)
Q Consensus 23 ~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 101 (159)
+||+++|++|||||||+++|+++.+...+.++.+..+ ...+..++..+.+++||++|++.+..++..++++++++|+||
T Consensus 1 ~ki~~vG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 80 (168)
T cd04119 1 IKVISMGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPEYLEVRNEFYKDTQGVLLVY 80 (168)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCeEEEEEEEECCccHHHHHHHHHHhccCCEEEEEE
Confidence 5899999999999999999999999888899888766 446777888899999999999999989999999999999999
Q ss_pred eCCChhhHHhhhhhhHHHHHhhhC------CCCCEEEEeeCcccccCccccccCCCcc
Q 044772 102 SLISRPSYENISKKKWVPELRHYA------PSVPIVLVGTKLDLRKDRQFHLDYPGAY 153 (159)
Q Consensus 102 d~~~~~s~~~~~~~~~~~~i~~~~------~~~piilv~nK~Dl~~~r~v~~~~~~~~ 153 (159)
|++++++|..+. .|+..+.... .+.|+++|+||+|+.+.+.++.++++.+
T Consensus 81 D~~~~~s~~~~~--~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~ 136 (168)
T cd04119 81 DVTDRQSFEALD--SWLKEMKQEGGPHGNMENIVVVVCANKIDLTKHRAVSEDEGRLW 136 (168)
T ss_pred ECCCHHHHHhHH--HHHHHHHHhccccccCCCceEEEEEEchhcccccccCHHHHHHH
Confidence 999999999988 8999887764 3689999999999986666666555444
No 52
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=99.96 E-value=2.1e-28 Score=169.17 Aligned_cols=123 Identities=37% Similarity=0.604 Sum_probs=108.7
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEEEE
Q 044772 22 FIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAF 101 (159)
Q Consensus 22 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 101 (159)
.+||+++|++|||||||+++|.++.+...+.++.+..+...+.+++..+.+++||++|++.+..++..++++++++++||
T Consensus 1 ~~ki~iiG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~~~~~i~v~ 80 (162)
T cd04138 1 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVF 80 (162)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCcCCcCCcchheEEEEEEECCEEEEEEEEECCCCcchHHHHHHHHhcCCEEEEEE
Confidence 36999999999999999999999999888889988777777788888888999999999999999999999999999999
Q ss_pred eCCChhhHHhhhhhhHHHHHhhhC--CCCCEEEEeeCcccccCccccc
Q 044772 102 SLISRPSYENISKKKWVPELRHYA--PSVPIVLVGTKLDLRKDRQFHL 147 (159)
Q Consensus 102 d~~~~~s~~~~~~~~~~~~i~~~~--~~~piilv~nK~Dl~~~r~v~~ 147 (159)
|++++.+|..+. .|+..+.+.. .+.|++||+||+|+.+ +.+..
T Consensus 81 ~~~~~~s~~~~~--~~~~~i~~~~~~~~~piivv~nK~Dl~~-~~~~~ 125 (162)
T cd04138 81 AINSRKSFEDIH--TYREQIKRVKDSDDVPMVLVGNKCDLAA-RTVSS 125 (162)
T ss_pred ECCCHHHHHHHH--HHHHHHHHhcCCCCCCEEEEEECccccc-ceecH
Confidence 999999999987 7888877664 4789999999999975 34433
No 53
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=99.96 E-value=7.6e-28 Score=175.36 Aligned_cols=120 Identities=30% Similarity=0.523 Sum_probs=109.0
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeee-EEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEE
Q 044772 20 TKFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNF-SANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADVFI 98 (159)
Q Consensus 20 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i 98 (159)
...+||+++|++|||||||+++++.+.+...+.+|.+..+ ...+..++..+.+.+||++|++.|..++..++++++++|
T Consensus 11 ~~~~Ki~vvG~~gvGKTsli~~~~~~~f~~~~~~tig~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i 90 (219)
T PLN03071 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (219)
T ss_pred CCceEEEEECcCCCCHHHHHHHHhhCCCCCccCCccceeEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHcccccEEE
Confidence 6779999999999999999999999999888899987665 345666777789999999999999999999999999999
Q ss_pred EEEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCccccc
Q 044772 99 LAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRK 141 (159)
Q Consensus 99 ~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~ 141 (159)
+|||++++++|..+. .|+..+....++.|++|||||+|+..
T Consensus 91 lvfD~~~~~s~~~i~--~w~~~i~~~~~~~piilvgNK~Dl~~ 131 (219)
T PLN03071 91 IMFDVTARLTYKNVP--TWHRDLCRVCENIPIVLCGNKVDVKN 131 (219)
T ss_pred EEEeCCCHHHHHHHH--HHHHHHHHhCCCCcEEEEEEchhhhh
Confidence 999999999999998 99999998888999999999999963
No 54
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=99.96 E-value=3.8e-28 Score=169.88 Aligned_cols=131 Identities=37% Similarity=0.670 Sum_probs=112.5
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeee-EEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEE
Q 044772 20 TKFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNF-SANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADVFI 98 (159)
Q Consensus 20 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i 98 (159)
...+||+++|++|||||||+++++.+.+...+.++.+..+ ...+..++..+.+++||++|++.+..++..+++.+++++
T Consensus 3 ~~~~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i 82 (170)
T cd04116 3 SSLLKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQERFRSLRTPFYRGSDCCL 82 (170)
T ss_pred ceEEEEEEECCCCCCHHHHHHHHHcCCCCcCcCCceeeEEEEEEEEECCeEEEEEEEeCCChHHHHHhHHHHhcCCCEEE
Confidence 3569999999999999999999999999888888877665 456778888999999999999999999999999999999
Q ss_pred EEEeCCChhhHHhhhhhhHHHHHhhhC-----CCCCEEEEeeCcccccCccccccCCCcc
Q 044772 99 LAFSLISRPSYENISKKKWVPELRHYA-----PSVPIVLVGTKLDLRKDRQFHLDYPGAY 153 (159)
Q Consensus 99 ~v~d~~~~~s~~~~~~~~~~~~i~~~~-----~~~piilv~nK~Dl~~~r~v~~~~~~~~ 153 (159)
+|||++++++|..+. .|+..+.... .++|++||+||+|+. .+.++.++.+++
T Consensus 83 ~v~d~~~~~s~~~~~--~~~~~~~~~~~~~~~~~~piilv~nK~Dl~-~~~~~~~~~~~~ 139 (170)
T cd04116 83 LTFAVDDSQSFQNLS--NWKKEFIYYADVKEPESFPFVVLGNKNDIP-ERQVSTEEAQAW 139 (170)
T ss_pred EEEECCCHHHHHhHH--HHHHHHHHhcccccCCCCcEEEEEECcccc-ccccCHHHHHHH
Confidence 999999999999998 8988776543 368999999999996 566666555444
No 55
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=99.96 E-value=2.8e-28 Score=173.02 Aligned_cols=115 Identities=30% Similarity=0.635 Sum_probs=103.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeee-EEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEEEE
Q 044772 23 IKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNF-SANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAF 101 (159)
Q Consensus 23 ~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 101 (159)
+||+++|++|||||||+++|+.+.|...|.+|.+..+ .+.+.+++..+.+++||++|++.+..++..++++++++++||
T Consensus 1 ~Ki~vlG~~~vGKTsLi~~~~~~~f~~~~~~T~g~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~iilv~ 80 (182)
T cd04128 1 LKIGLLGDAQIGKTSLMVKYVEGEFDEDYIQTLGVNFMEKTISIRGTEITFSIWDLGGQREFINMLPLVCNDAVAILFMF 80 (182)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCchhHHHhhHHHCcCCCEEEEEE
Confidence 5899999999999999999999999988999998766 457778888899999999999999999999999999999999
Q ss_pred eCCChhhHHhhhhhhHHHHHhhhCC-CCCEEEEeeCcccc
Q 044772 102 SLISRPSYENISKKKWVPELRHYAP-SVPIVLVGTKLDLR 140 (159)
Q Consensus 102 d~~~~~s~~~~~~~~~~~~i~~~~~-~~piilv~nK~Dl~ 140 (159)
|++++.+|..+. .|+..+....+ ..| ++||||+|+.
T Consensus 81 D~t~~~s~~~i~--~~~~~~~~~~~~~~p-ilVgnK~Dl~ 117 (182)
T cd04128 81 DLTRKSTLNSIK--EWYRQARGFNKTAIP-ILVGTKYDLF 117 (182)
T ss_pred ECcCHHHHHHHH--HHHHHHHHhCCCCCE-EEEEEchhcc
Confidence 999999999998 89999887654 456 6889999995
No 56
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=99.96 E-value=2.9e-28 Score=169.16 Aligned_cols=129 Identities=33% Similarity=0.563 Sum_probs=113.0
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEEEE
Q 044772 22 FIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAF 101 (159)
Q Consensus 22 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 101 (159)
.+||+++|++|+|||||+++++++.+...+.++....+.....+++..+.+++||+||++.+..++..++++++++++||
T Consensus 2 ~~ki~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~ 81 (164)
T cd04145 2 TYKLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSYTKQCEIDGQWAILDILDTAGQEEFSAMREQYMRTGEGFLLVF 81 (164)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCcccCCCccceEEEEEEECCEEEEEEEEECCCCcchhHHHHHHHhhCCEEEEEE
Confidence 47999999999999999999999998888888887777666778888889999999999999999999999999999999
Q ss_pred eCCChhhHHhhhhhhHHHHHhhhC--CCCCEEEEeeCcccccCccccccCCCc
Q 044772 102 SLISRPSYENISKKKWVPELRHYA--PSVPIVLVGTKLDLRKDRQFHLDYPGA 152 (159)
Q Consensus 102 d~~~~~s~~~~~~~~~~~~i~~~~--~~~piilv~nK~Dl~~~r~v~~~~~~~ 152 (159)
|++++.+|..+. .|+..+.+.. .+.|++||+||+|+..++.++.+++.+
T Consensus 82 d~~~~~s~~~~~--~~~~~~~~~~~~~~~piiiv~NK~Dl~~~~~~~~~~~~~ 132 (164)
T cd04145 82 SVTDRGSFEEVD--KFHTQILRVKDRDEFPMILVGNKADLEHQRKVSREEGQE 132 (164)
T ss_pred ECCCHHHHHHHH--HHHHHHHHHhCCCCCCEEEEeeCccccccceecHHHHHH
Confidence 999999999998 8888877653 578999999999998877776555443
No 57
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=99.96 E-value=3e-28 Score=169.54 Aligned_cols=130 Identities=36% Similarity=0.636 Sum_probs=113.8
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeee-EEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEEE
Q 044772 22 FIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNF-SANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADVFILA 100 (159)
Q Consensus 22 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v 100 (159)
.+||+++|++|||||||++++.++.+...+.++.+..+ ...+..++..+.+++||++|++.+...+..++++++++|+|
T Consensus 3 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v 82 (165)
T cd01868 3 LFKIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFATRSIQIDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLV 82 (165)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHCCCCEEEEE
Confidence 57999999999999999999999998878888887665 45677788888999999999999998889999999999999
Q ss_pred EeCCChhhHHhhhhhhHHHHHhhhCC-CCCEEEEeeCcccccCccccccCCCcc
Q 044772 101 FSLISRPSYENISKKKWVPELRHYAP-SVPIVLVGTKLDLRKDRQFHLDYPGAY 153 (159)
Q Consensus 101 ~d~~~~~s~~~~~~~~~~~~i~~~~~-~~piilv~nK~Dl~~~r~v~~~~~~~~ 153 (159)
||++++.+|..+. .|+..+..... ++|++||+||+|+...+++..++...+
T Consensus 83 ~d~~~~~s~~~~~--~~~~~~~~~~~~~~pi~vv~nK~Dl~~~~~~~~~~~~~~ 134 (165)
T cd01868 83 YDITKKQTFENVE--RWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTEEAKAF 134 (165)
T ss_pred EECcCHHHHHHHH--HHHHHHHHhCCCCCeEEEEEECccccccccCCHHHHHHH
Confidence 9999999999998 89999887764 699999999999988777766554443
No 58
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.96 E-value=3.8e-28 Score=172.85 Aligned_cols=130 Identities=30% Similarity=0.571 Sum_probs=113.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeee-EEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEEEE
Q 044772 23 IKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNF-SANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAF 101 (159)
Q Consensus 23 ~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 101 (159)
+||+++|++|||||||+++|.++.+...+.++.+..+ ...+.+++..+.+++||++|++.+...+..++++++++++||
T Consensus 1 ~ki~v~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~iilv~ 80 (188)
T cd04125 1 FKVVIIGDYGVGKSSLLKRFTEDEFSESTKSTIGVDFKIKTVYIENKIIKLQIWDTNGQERFRSLNNSYYRGAHGYLLVY 80 (188)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHhhHHHHccCCCEEEEEE
Confidence 5899999999999999999999999877888887665 446677888899999999999999989999999999999999
Q ss_pred eCCChhhHHhhhhhhHHHHHhhhC-CCCCEEEEeeCcccccCccccccCCCccc
Q 044772 102 SLISRPSYENISKKKWVPELRHYA-PSVPIVLVGTKLDLRKDRQFHLDYPGAYT 154 (159)
Q Consensus 102 d~~~~~s~~~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~r~v~~~~~~~~~ 154 (159)
|++++++|..+. .|+..+.... .+.|+++|+||+|+.+.+.+..++++.++
T Consensus 81 d~~~~~s~~~i~--~~~~~i~~~~~~~~~~ivv~nK~Dl~~~~~v~~~~~~~~~ 132 (188)
T cd04125 81 DVTDQESFENLK--FWINEINRYARENVIKVIVANKSDLVNNKVVDSNIAKSFC 132 (188)
T ss_pred ECcCHHHHHHHH--HHHHHHHHhCCCCCeEEEEEECCCCcccccCCHHHHHHHH
Confidence 999999999998 8999988765 46899999999999988877766655443
No 59
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=99.96 E-value=6.8e-28 Score=169.10 Aligned_cols=119 Identities=60% Similarity=1.145 Sum_probs=107.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEEEEe
Q 044772 23 IKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFS 102 (159)
Q Consensus 23 ~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d 102 (159)
+||+++|++|+|||||++++..+.+...+.++....+...+.+++..+.+.+||++|++.+...+..++.+++++++|||
T Consensus 1 ~ki~i~G~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~~ 80 (174)
T cd04135 1 LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICFS 80 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeEEEEEECCEEEEEEEEeCCCcccccccccccCCCCCEEEEEEE
Confidence 58999999999999999999999998888888887776677788888899999999999999999999999999999999
Q ss_pred CCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCcccccC
Q 044772 103 LISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKD 142 (159)
Q Consensus 103 ~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~ 142 (159)
+.++.+|+.+.. .|++.+....++.|+++|+||+|+.+.
T Consensus 81 ~~~~~s~~~~~~-~~~~~l~~~~~~~piivv~nK~Dl~~~ 119 (174)
T cd04135 81 VVNPASFQNVKE-EWVPELKEYAPNVPYLLVGTQIDLRDD 119 (174)
T ss_pred CCCHHHHHHHHH-HHHHHHHhhCCCCCEEEEeEchhhhcC
Confidence 999999999875 798888877778999999999998654
No 60
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=99.96 E-value=3e-28 Score=176.95 Aligned_cols=130 Identities=31% Similarity=0.491 Sum_probs=112.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeee-EEEEEECC-eEEEEEEEeCCCcccccccccccccCCcEEEEE
Q 044772 23 IKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNF-SANVMVDG-RTVNLGLWDTAGQEDYNRLRPLSYRGADVFILA 100 (159)
Q Consensus 23 ~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~-~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v 100 (159)
+||+++|++|||||||+++|.++.+...+.+|.+..+ ...+.+++ ..+.+++||++|++.+...+..+++++|++|+|
T Consensus 1 ~Ki~ivG~~~vGKSsLi~~l~~~~~~~~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~ad~iilV 80 (215)
T cd04109 1 FKIVVLGDGAVGKTSLCRRFAKEGFGKSYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQSIGGKMLDKYIYGAHAVFLV 80 (215)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCcHHHHHHHHHHhhcCCEEEEE
Confidence 5899999999999999999999999989999987554 45666654 578999999999999999999999999999999
Q ss_pred EeCCChhhHHhhhhhhHHHHHhhhC----CCCCEEEEeeCcccccCccccccCCCccc
Q 044772 101 FSLISRPSYENISKKKWVPELRHYA----PSVPIVLVGTKLDLRKDRQFHLDYPGAYT 154 (159)
Q Consensus 101 ~d~~~~~s~~~~~~~~~~~~i~~~~----~~~piilv~nK~Dl~~~r~v~~~~~~~~~ 154 (159)
||++++++|..+. .|+..+.+.. .++|+++|+||+|+.+.|+++.++++.++
T Consensus 81 ~D~t~~~s~~~~~--~w~~~l~~~~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~~ 136 (215)
T cd04109 81 YDVTNSQSFENLE--DWYSMVRKVLKSSETQPLVVLVGNKTDLEHNRTVKDDKHARFA 136 (215)
T ss_pred EECCCHHHHHHHH--HHHHHHHHhccccCCCceEEEEEECcccccccccCHHHHHHHH
Confidence 9999999999998 8999888764 25789999999999888888776655443
No 61
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=99.96 E-value=2.6e-28 Score=180.56 Aligned_cols=128 Identities=29% Similarity=0.471 Sum_probs=112.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEEEEe
Q 044772 23 IKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFS 102 (159)
Q Consensus 23 ~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d 102 (159)
+||+++|++|||||||+++|+.+.|...|.+|.++.+...+.+++..+.++|||++|++.|..++..++.++|++|+|||
T Consensus 1 ~KVvvlG~~gvGKTSLi~r~~~~~f~~~y~pTi~d~~~k~~~i~~~~~~l~I~Dt~G~~~~~~~~~~~~~~ad~iIlVfd 80 (247)
T cd04143 1 YRMVVLGASKVGKTAIVSRFLGGRFEEQYTPTIEDFHRKLYSIRGEVYQLDILDTSGNHPFPAMRRLSILTGDVFILVFS 80 (247)
T ss_pred CEEEEECcCCCCHHHHHHHHHcCCCCCCCCCChhHhEEEEEEECCEEEEEEEEECCCChhhhHHHHHHhccCCEEEEEEe
Confidence 58999999999999999999999998888999887677777888989999999999999998888888999999999999
Q ss_pred CCChhhHHhhhhhhHHHHHhhh----------CCCCCEEEEeeCcccccCccccccCCCc
Q 044772 103 LISRPSYENISKKKWVPELRHY----------APSVPIVLVGTKLDLRKDRQFHLDYPGA 152 (159)
Q Consensus 103 ~~~~~s~~~~~~~~~~~~i~~~----------~~~~piilv~nK~Dl~~~r~v~~~~~~~ 152 (159)
++++++|+.+. .|+..+... ..++|++||+||+|+...+++..++..+
T Consensus 81 v~~~~Sf~~i~--~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~~~~v~~~ei~~ 138 (247)
T cd04143 81 LDNRESFEEVC--RLREQILETKSCLKNKTKENVKIPMVICGNKADRDFPREVQRDEVEQ 138 (247)
T ss_pred CCCHHHHHHHH--HHHHHHHHhhcccccccccCCCCcEEEEEECccchhccccCHHHHHH
Confidence 99999999998 888877653 2479999999999998777777655443
No 62
>KOG0393 consensus Ras-related small GTPase, Rho type [General function prediction only]
Probab=99.95 E-value=1e-28 Score=174.25 Aligned_cols=138 Identities=64% Similarity=1.109 Sum_probs=123.4
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeeeEEEEEEC-CeEEEEEEEeCCCcccccccccccccCCcEEE
Q 044772 20 TKFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVD-GRTVNLGLWDTAGQEDYNRLRPLSYRGADVFI 98 (159)
Q Consensus 20 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i 98 (159)
...+|+++||+.++|||+|+..+..+.|...|.||..++|...+.++ +..+.+.+|||.|++.|.+.+...|+++|.++
T Consensus 2 ~~~~K~VvVGDga~GKT~ll~~~t~~~fp~~yvPTVFdnys~~v~V~dg~~v~L~LwDTAGqedYDrlRplsY~~tdvfl 81 (198)
T KOG0393|consen 2 SRRIKCVVVGDGAVGKTCLLISYTTNAFPEEYVPTVFDNYSANVTVDDGKPVELGLWDTAGQEDYDRLRPLSYPQTDVFL 81 (198)
T ss_pred ceeeEEEEECCCCcCceEEEEEeccCcCcccccCeEEccceEEEEecCCCEEEEeeeecCCCcccccccccCCCCCCEEE
Confidence 35689999999999999999999999999999999999999989995 99999999999999999998888999999999
Q ss_pred EEEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCcccccCccc--cccCCCccccccC
Q 044772 99 LAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKDRQF--HLDYPGAYTISTE 158 (159)
Q Consensus 99 ~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~r~v--~~~~~~~~~~~~~ 158 (159)
+||++.++.+|.++.. .|+.++.++++++|++|||+|.||.++... ...+.++-+++.+
T Consensus 82 ~cfsv~~p~S~~nv~~-kW~pEi~~~cp~vpiiLVGtk~DLr~d~~~~~~l~~~~~~~Vt~~ 142 (198)
T KOG0393|consen 82 LCFSVVSPESFENVKS-KWIPEIKHHCPNVPIILVGTKADLRDDPSTLEKLQRQGLEPVTYE 142 (198)
T ss_pred EEEEcCChhhHHHHHh-hhhHHHHhhCCCCCEEEEeehHHhhhCHHHHHHHHhccCCcccHH
Confidence 9999999999999988 999999999999999999999999965533 2334455555544
No 63
>PLN03110 Rab GTPase; Provisional
Probab=99.95 E-value=5.2e-28 Score=175.91 Aligned_cols=134 Identities=32% Similarity=0.550 Sum_probs=118.0
Q ss_pred cceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeee-EEEEEECCeEEEEEEEeCCCcccccccccccccCCcEE
Q 044772 19 ATKFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNF-SANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADVF 97 (159)
Q Consensus 19 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ 97 (159)
....+||+++|++|||||||+++|.++.+...+.++.+..+ ...+.+++..+.+++||++|++.+..++..++++++++
T Consensus 9 ~~~~~Ki~ivG~~~vGKStLi~~l~~~~~~~~~~~t~g~~~~~~~v~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~~~~ 88 (216)
T PLN03110 9 YDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGA 88 (216)
T ss_pred cCceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhCCCCEE
Confidence 34678999999999999999999999998878888888766 45777888889999999999999999999999999999
Q ss_pred EEEEeCCChhhHHhhhhhhHHHHHhhhC-CCCCEEEEeeCcccccCccccccCCCccc
Q 044772 98 ILAFSLISRPSYENISKKKWVPELRHYA-PSVPIVLVGTKLDLRKDRQFHLDYPGAYT 154 (159)
Q Consensus 98 i~v~d~~~~~s~~~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~r~v~~~~~~~~~ 154 (159)
|+|||++++.+|..+. .|+..+.... .++|+++|+||+|+...+.++.++++.++
T Consensus 89 ilv~d~~~~~s~~~~~--~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~l~ 144 (216)
T PLN03110 89 LLVYDITKRQTFDNVQ--RWLRELRDHADSNIVIMMAGNKSDLNHLRSVAEEDGQALA 144 (216)
T ss_pred EEEEECCChHHHHHHH--HHHHHHHHhCCCCCeEEEEEEChhcccccCCCHHHHHHHH
Confidence 9999999999999998 9999888775 47999999999999888888766655543
No 64
>KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only]
Probab=99.95 E-value=2e-29 Score=170.65 Aligned_cols=133 Identities=31% Similarity=0.514 Sum_probs=119.3
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeee-EEEEEE-CCeEEEEEEEeCCCcccccccccccccCCcEEE
Q 044772 21 KFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNF-SANVMV-DGRTVNLGLWDTAGQEDYNRLRPLSYRGADVFI 98 (159)
Q Consensus 21 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~-~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i 98 (159)
..+++++||++-||||||++.|..++|..-..||.+..+ ...+++ ++..+++++|||.|+++|+++.+.|++++-+++
T Consensus 7 yqfrlivigdstvgkssll~~ft~gkfaelsdptvgvdffarlie~~pg~riklqlwdtagqerfrsitksyyrnsvgvl 86 (213)
T KOG0091|consen 7 YQFRLIVIGDSTVGKSSLLRYFTEGKFAELSDPTVGVDFFARLIELRPGYRIKLQLWDTAGQERFRSITKSYYRNSVGVL 86 (213)
T ss_pred EEEEEEEEcCCcccHHHHHHHHhcCcccccCCCccchHHHHHHHhcCCCcEEEEEEeeccchHHHHHHHHHHhhcccceE
Confidence 467999999999999999999999999988899998777 334444 578899999999999999999999999999999
Q ss_pred EEEeCCChhhHHhhhhhhHHHHHhhhC--C-CCCEEEEeeCcccccCccccccCCCcccc
Q 044772 99 LAFSLISRPSYENISKKKWVPELRHYA--P-SVPIVLVGTKLDLRKDRQFHLDYPGAYTI 155 (159)
Q Consensus 99 ~v~d~~~~~s~~~~~~~~~~~~i~~~~--~-~~piilv~nK~Dl~~~r~v~~~~~~~~~~ 155 (159)
+|||++++++|+.+. .|+.+...+. + ++.++|||+|+||..+|+|+.||++.+|-
T Consensus 87 lvyditnr~sfehv~--~w~~ea~m~~q~P~k~VFlLVGhKsDL~SqRqVt~EEaEklAa 144 (213)
T KOG0091|consen 87 LVYDITNRESFEHVE--NWVKEAAMATQGPDKVVFLLVGHKSDLQSQRQVTAEEAEKLAA 144 (213)
T ss_pred EEEeccchhhHHHHH--HHHHHHHHhcCCCCeeEEEEeccccchhhhccccHHHHHHHHH
Confidence 999999999999999 9999887665 2 56679999999999999999999998763
No 65
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=99.95 E-value=4.2e-28 Score=168.20 Aligned_cols=129 Identities=33% Similarity=0.623 Sum_probs=111.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeee-EEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEEEE
Q 044772 23 IKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNF-SANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAF 101 (159)
Q Consensus 23 ~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 101 (159)
+||+++|++|||||||+++|.++++...+.++.+..+ ...+.+++..+.+++||++|++.+...+..++++++++++||
T Consensus 1 ~ki~v~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~~~~i~v~ 80 (161)
T cd04113 1 FKFIIIGSSGTGKSCLLHRFVENKFKEDSQHTIGVEFGSKIIRVGGKRVKLQIWDTAGQERFRSVTRSYYRGAAGALLVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEECcchHHHHHhHHHHhcCCCEEEEEE
Confidence 5899999999999999999999998887777776655 446677888889999999999999989999999999999999
Q ss_pred eCCChhhHHhhhhhhHHHHHhhhC-CCCCEEEEeeCcccccCccccccCCCcc
Q 044772 102 SLISRPSYENISKKKWVPELRHYA-PSVPIVLVGTKLDLRKDRQFHLDYPGAY 153 (159)
Q Consensus 102 d~~~~~s~~~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~r~v~~~~~~~~ 153 (159)
|++++++|..+. .|+..+.... +++|++||+||+|+.+.+.+..+++..+
T Consensus 81 d~~~~~s~~~~~--~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~ 131 (161)
T cd04113 81 DITNRTSFEALP--TWLSDARALASPNIVVILVGNKSDLADQREVTFLEASRF 131 (161)
T ss_pred ECCCHHHHHHHH--HHHHHHHHhCCCCCeEEEEEEchhcchhccCCHHHHHHH
Confidence 999999999998 8998887654 6899999999999988777766555443
No 66
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=99.95 E-value=8.9e-28 Score=172.10 Aligned_cols=130 Identities=43% Similarity=0.710 Sum_probs=105.5
Q ss_pred eeEEEEEcCCCCCHHHHHH-HHhcCC-----CCCCccccee--eeeEEE--------EEECCeEEEEEEEeCCCcccccc
Q 044772 22 FIKCVTVRDGAVGKTCLLI-SYTGNT-----FPTDYVPTVF--DNFSAN--------VMVDGRTVNLGLWDTAGQEDYNR 85 (159)
Q Consensus 22 ~~ki~vvG~~~~GKSsli~-~l~~~~-----~~~~~~~t~~--~~~~~~--------~~~~~~~~~~~i~D~~g~~~~~~ 85 (159)
.+||+++|++|||||||+. ++.++. +...|.||.+ ..+... ..+++..+.+++|||+|++. .
T Consensus 2 ~~Kiv~vG~~~vGKTsLi~~~~~~~~~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~~~~~~~~~v~l~iwDTaG~~~--~ 79 (195)
T cd01873 2 TIKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVDGVSVSLRLWDTFGDHD--K 79 (195)
T ss_pred ceEEEEECCCCcCHHHHHHHHHhCCCcccccCccccCCceecccceeEEeeeccccceeeCCEEEEEEEEeCCCChh--h
Confidence 4799999999999999996 555443 4566788885 334322 25678889999999999875 3
Q ss_pred cccccccCCcEEEEEEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCccccc-------------------Ccccc
Q 044772 86 LRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRK-------------------DRQFH 146 (159)
Q Consensus 86 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~-------------------~r~v~ 146 (159)
+...++++++++|+|||++++.+|..+.. .|+..+....++.|++|||||+||.+ .|.|+
T Consensus 80 ~~~~~~~~ad~iilv~d~t~~~Sf~~~~~-~w~~~i~~~~~~~piilvgNK~DL~~~~~~~~~~~~~~~~~~~~~~~~V~ 158 (195)
T cd01873 80 DRRFAYGRSDVVLLCFSIASPNSLRNVKT-MWYPEIRHFCPRVPVILVGCKLDLRYADLDEVNRARRPLARPIKNADILP 158 (195)
T ss_pred hhcccCCCCCEEEEEEECCChhHHHHHHH-HHHHHHHHhCCCCCEEEEEEchhccccccchhhhcccccccccccCCccC
Confidence 45678999999999999999999999974 69999988777899999999999974 47888
Q ss_pred ccCCCccc
Q 044772 147 LDYPGAYT 154 (159)
Q Consensus 147 ~~~~~~~~ 154 (159)
.++++.+|
T Consensus 159 ~~e~~~~a 166 (195)
T cd01873 159 PETGRAVA 166 (195)
T ss_pred HHHHHHHH
Confidence 88887776
No 67
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=99.95 E-value=6.4e-28 Score=168.75 Aligned_cols=132 Identities=29% Similarity=0.612 Sum_probs=114.1
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeee-EEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEE
Q 044772 21 KFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNF-SANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL 99 (159)
Q Consensus 21 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~ 99 (159)
..+||+++|++|||||||++++.++++...+.++.+..+ ...+..++..+.+.+||++|++.+......+++.++++++
T Consensus 3 ~~~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~il~ 82 (168)
T cd01866 3 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALL 82 (168)
T ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEE
Confidence 458999999999999999999999998877777776655 4466778878899999999999998888899999999999
Q ss_pred EEeCCChhhHHhhhhhhHHHHHhhhC-CCCCEEEEeeCcccccCccccccCCCccc
Q 044772 100 AFSLISRPSYENISKKKWVPELRHYA-PSVPIVLVGTKLDLRKDRQFHLDYPGAYT 154 (159)
Q Consensus 100 v~d~~~~~s~~~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~r~v~~~~~~~~~ 154 (159)
|||++++++|..+. .|+..+..+. +++|++||+||.|+...+.++.++++.++
T Consensus 83 v~d~~~~~s~~~~~--~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~ 136 (168)
T cd01866 83 VYDITRRETFNHLT--SWLEDARQHSNSNMTIMLIGNKCDLESRREVSYEEGEAFA 136 (168)
T ss_pred EEECCCHHHHHHHH--HHHHHHHHhCCCCCcEEEEEECcccccccCCCHHHHHHHH
Confidence 99999999999998 9999998765 68999999999999877777766655443
No 68
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=99.95 E-value=2e-27 Score=166.82 Aligned_cols=119 Identities=36% Similarity=0.597 Sum_probs=106.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeeeE-EEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEEEEe
Q 044772 24 KCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFS-ANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFS 102 (159)
Q Consensus 24 ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d 102 (159)
||+++|++|||||||+++++.+.|...|.+|.+..+. ..+.+++..+.+++||++|++.+..++..++++++++++|||
T Consensus 2 ki~ivG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d 81 (170)
T cd04108 2 KVIVVGDLSVGKTCLINRFCKDVFDKNYKATIGVDFEMERFEILGVPFSLQLWDTAGQERFKCIASTYYRGAQAIIIVFD 81 (170)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCChHHHHhhHHHHhcCCCEEEEEEE
Confidence 7999999999999999999999999999999987764 566778888899999999999999999999999999999999
Q ss_pred CCChhhHHhhhhhhHHHHHhhhC--CCCCEEEEeeCcccccCcc
Q 044772 103 LISRPSYENISKKKWVPELRHYA--PSVPIVLVGTKLDLRKDRQ 144 (159)
Q Consensus 103 ~~~~~s~~~~~~~~~~~~i~~~~--~~~piilv~nK~Dl~~~r~ 144 (159)
++++++|..+. .|+..+.+.. .+.|+++|+||+|+.+.+.
T Consensus 82 ~~~~~s~~~~~--~~~~~~~~~~~~~~~~iilVgnK~Dl~~~~~ 123 (170)
T cd04108 82 LTDVASLEHTR--QWLEDALKENDPSSVLLFLVGTKKDLSSPAQ 123 (170)
T ss_pred CcCHHHHHHHH--HHHHHHHHhcCCCCCeEEEEEEChhcCcccc
Confidence 99999999998 8999876543 3578999999999976544
No 69
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.95 E-value=1.6e-27 Score=167.13 Aligned_cols=126 Identities=21% Similarity=0.295 Sum_probs=108.6
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCCC-CCcccceeeeeE-EEEEECCeEEEEEEEeCCCcccccccccccccCCcEE
Q 044772 20 TKFIKCVTVRDGAVGKTCLLISYTGNTFP-TDYVPTVFDNFS-ANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADVF 97 (159)
Q Consensus 20 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~-~~~~~t~~~~~~-~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ 97 (159)
...+||+++|++|||||||+++|+++.+. ..|.+|.+..+. ..+..++..+.+.+||++|++.+..++..++.++|++
T Consensus 2 ~~~~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~~T~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~d~~ 81 (169)
T cd01892 2 RNVFLCFVLGAKGSGKSALLRAFLGRSFSLNAYSPTIKPRYAVNTVEVYGQEKYLILREVGEDEVAILLNDAELAACDVA 81 (169)
T ss_pred CeEEEEEEECCCCCcHHHHHHHHhCCCCCcccCCCccCcceEEEEEEECCeEEEEEEEecCCcccccccchhhhhcCCEE
Confidence 46789999999999999999999999998 889999887764 4567788778899999999999988889999999999
Q ss_pred EEEEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCcccccCcccccc
Q 044772 98 ILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKDRQFHLD 148 (159)
Q Consensus 98 i~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~r~v~~~ 148 (159)
++|||++++.+|..+. .|+..+... .++|+++|+||+|+.+.+++..+
T Consensus 82 llv~d~~~~~s~~~~~--~~~~~~~~~-~~~p~iiv~NK~Dl~~~~~~~~~ 129 (169)
T cd01892 82 CLVYDSSDPKSFSYCA--EVYKKYFML-GEIPCLFVAAKADLDEQQQRYEV 129 (169)
T ss_pred EEEEeCCCHHHHHHHH--HHHHHhccC-CCCeEEEEEEccccccccccccc
Confidence 9999999999999887 888765432 37999999999999776665443
No 70
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=99.95 E-value=3.3e-28 Score=169.51 Aligned_cols=129 Identities=31% Similarity=0.489 Sum_probs=109.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccc-ccccccccccCCcEEEEEEe
Q 044772 24 KCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQED-YNRLRPLSYRGADVFILAFS 102 (159)
Q Consensus 24 ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~-~~~~~~~~~~~~~~~i~v~d 102 (159)
||+++|++|||||||+++++.+.+...+.++....+......++..+.+++||++|++. +......+++++|++|+|||
T Consensus 1 ki~vvG~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v~d 80 (165)
T cd04146 1 KIAVLGASGVGKSALVVRFLTKRFIGEYDPNLESLYSRQVTIDGEQVSLEILDTAGQQQADTEQLERSIRWADGFVLVYS 80 (165)
T ss_pred CEEEECCCCCcHHHHHHHHHhCccccccCCChHHhceEEEEECCEEEEEEEEECCCCcccccchHHHHHHhCCEEEEEEE
Confidence 68999999999999999999998888888888766766677888888999999999985 34556778999999999999
Q ss_pred CCChhhHHhhhhhhHHHHHhhhC---CCCCEEEEeeCcccccCccccccCCCccc
Q 044772 103 LISRPSYENISKKKWVPELRHYA---PSVPIVLVGTKLDLRKDRQFHLDYPGAYT 154 (159)
Q Consensus 103 ~~~~~s~~~~~~~~~~~~i~~~~---~~~piilv~nK~Dl~~~r~v~~~~~~~~~ 154 (159)
++++++|..+. .|+..+.... .++|+++|+||+|+...+.++.+++++++
T Consensus 81 ~~~~~s~~~~~--~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~ 133 (165)
T cd04146 81 ITDRSSFDEIS--QLKQLIREIKKRDREIPVILVGNKADLLHYRQVSTEEGEKLA 133 (165)
T ss_pred CCCHHHHHHHH--HHHHHHHHHhcCCCCCCEEEEEECCchHHhCccCHHHHHHHH
Confidence 99999999998 8888777654 48999999999999888877776665543
No 71
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.95 E-value=8.4e-28 Score=174.23 Aligned_cols=131 Identities=31% Similarity=0.517 Sum_probs=112.7
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeee-EEEEEE-CCeEEEEEEEeCCCcccccccccccccCCcEEEE
Q 044772 22 FIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNF-SANVMV-DGRTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL 99 (159)
Q Consensus 22 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~-~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~ 99 (159)
.+||+++|++|||||||+++|+++.+...+.+|.+..+ ...+.+ ++..+.+++||++|++.+...+..++++++++|+
T Consensus 2 ~~KIvvvG~~~vGKTsLi~~l~~~~~~~~~~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iil 81 (211)
T cd04111 2 QFRLIVIGDSTVGKSSLLKRFTEGRFAEVSDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQERFRSITRSYYRNSVGVLL 81 (211)
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCceeceEEEEEEEEECCCCEEEEEEEeCCcchhHHHHHHHHhcCCcEEEE
Confidence 48999999999999999999999999888888877555 445555 4667899999999999999999999999999999
Q ss_pred EEeCCChhhHHhhhhhhHHHHHhhhC--CCCCEEEEeeCcccccCccccccCCCccc
Q 044772 100 AFSLISRPSYENISKKKWVPELRHYA--PSVPIVLVGTKLDLRKDRQFHLDYPGAYT 154 (159)
Q Consensus 100 v~d~~~~~s~~~~~~~~~~~~i~~~~--~~~piilv~nK~Dl~~~r~v~~~~~~~~~ 154 (159)
|||++++++|..+. .|+..+.... ..+|++|||||+|+.+.+.++.++++.++
T Consensus 82 v~D~~~~~Sf~~l~--~~~~~i~~~~~~~~~~iilvgNK~Dl~~~~~v~~~~~~~~~ 136 (211)
T cd04111 82 VFDITNRESFEHVH--DWLEEARSHIQPHRPVFILVGHKCDLESQRQVTREEAEKLA 136 (211)
T ss_pred EEECCCHHHHHHHH--HHHHHHHHhcCCCCCeEEEEEEccccccccccCHHHHHHHH
Confidence 99999999999998 8999887664 36789999999999988888877665543
No 72
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=99.95 E-value=4.3e-27 Score=163.54 Aligned_cols=117 Identities=32% Similarity=0.624 Sum_probs=104.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeee-EEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEEEE
Q 044772 23 IKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNF-SANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAF 101 (159)
Q Consensus 23 ~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 101 (159)
+||+++|.+|||||||+++++.+.+.+.+.++.+... ......++..+.+++||++|++.+..++..++++++++++||
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 80 (161)
T cd04124 1 VKIILLGDSAVGKSKLVERFLMDGYEPQQLSTYALTLYKHNAKFEGKTILVDFWDTAGQERFQTMHASYYHKAHACILVF 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhCCCCEEEEEE
Confidence 5899999999999999999999999877777765444 445567788899999999999999999999999999999999
Q ss_pred eCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCccccc
Q 044772 102 SLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRK 141 (159)
Q Consensus 102 d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~ 141 (159)
|++++.+|..+. .|+..+....++.|+++|+||+|+..
T Consensus 81 d~~~~~s~~~~~--~~~~~i~~~~~~~p~ivv~nK~Dl~~ 118 (161)
T cd04124 81 DVTRKITYKNLS--KWYEELREYRPEIPCIVVANKIDLDP 118 (161)
T ss_pred ECCCHHHHHHHH--HHHHHHHHhCCCCcEEEEEECccCch
Confidence 999999999988 99999988777899999999999853
No 73
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=99.95 E-value=5.7e-27 Score=163.85 Aligned_cols=116 Identities=33% Similarity=0.587 Sum_probs=104.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeeeE-EEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEEEE
Q 044772 23 IKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFS-ANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAF 101 (159)
Q Consensus 23 ~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 101 (159)
+||+++|++|||||||+++++.+.+...+.++.+..+. ..+..++..+.+.+||++|++.+...+..++..+|++|+||
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 80 (166)
T cd00877 1 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQEKFGGLRDGYYIGGQCAIIMF 80 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCChhhccccHHHhcCCCEEEEEE
Confidence 58999999999999999999998888888888876553 34555777889999999999999888889999999999999
Q ss_pred eCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCcccc
Q 044772 102 SLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLR 140 (159)
Q Consensus 102 d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~ 140 (159)
|++++++|..+. .|+..+....+++|+++||||+|+.
T Consensus 81 d~~~~~s~~~~~--~~~~~i~~~~~~~piiiv~nK~Dl~ 117 (166)
T cd00877 81 DVTSRVTYKNVP--NWHRDLVRVCGNIPIVLCGNKVDIK 117 (166)
T ss_pred ECCCHHHHHHHH--HHHHHHHHhCCCCcEEEEEEchhcc
Confidence 999999999998 9999999888899999999999997
No 74
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=99.95 E-value=1.3e-27 Score=165.96 Aligned_cols=124 Identities=24% Similarity=0.345 Sum_probs=104.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEEEEe
Q 044772 23 IKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFS 102 (159)
Q Consensus 23 ~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d 102 (159)
+||+++|++|||||||+.+++.+.|...+.++ +..+...+.+++..+.+.+||++|++. ..++++++++++|||
T Consensus 1 ~ki~vvG~~gvGKTsli~~~~~~~f~~~~~~~-~~~~~~~i~~~~~~~~l~i~D~~g~~~-----~~~~~~~~~~ilv~d 74 (158)
T cd04103 1 LKLGIVGNLQSGKSALVHRYLTGSYVQLESPE-GGRFKKEVLVDGQSHLLLIRDEGGAPD-----AQFASWVDAVIFVFS 74 (158)
T ss_pred CEEEEECCCCCcHHHHHHHHHhCCCCCCCCCC-ccceEEEEEECCEEEEEEEEECCCCCc-----hhHHhcCCEEEEEEE
Confidence 58999999999999999999999888776655 444556778888888999999999964 346788999999999
Q ss_pred CCChhhHHhhhhhhHHHHHhhhC--CCCCEEEEeeCcccc--cCccccccCCCccc
Q 044772 103 LISRPSYENISKKKWVPELRHYA--PSVPIVLVGTKLDLR--KDRQFHLDYPGAYT 154 (159)
Q Consensus 103 ~~~~~s~~~~~~~~~~~~i~~~~--~~~piilv~nK~Dl~--~~r~v~~~~~~~~~ 154 (159)
++++.+|+.+. .|+..+..+. +++|++|||||+|+. ..|.|+.++++.++
T Consensus 75 ~~~~~sf~~~~--~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~~~v~~~~~~~~~ 128 (158)
T cd04103 75 LENEASFQTVY--NLYHQLSSYRNISEIPLILVGTQDAISESNPRVIDDARARQLC 128 (158)
T ss_pred CCCHHHHHHHH--HHHHHHHHhcCCCCCCEEEEeeHHHhhhcCCcccCHHHHHHHH
Confidence 99999999998 8999998775 579999999999995 36788877665554
No 75
>PLN03108 Rab family protein; Provisional
Probab=99.95 E-value=1.7e-27 Score=172.45 Aligned_cols=133 Identities=28% Similarity=0.580 Sum_probs=116.5
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeee-EEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEE
Q 044772 20 TKFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNF-SANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADVFI 98 (159)
Q Consensus 20 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i 98 (159)
...+||+++|++|+|||||+++|....+...+.++.+..+ ...+.+++..+.+.+||++|++.+..++..++..++++|
T Consensus 4 ~~~~kivivG~~gvGKStLi~~l~~~~~~~~~~~ti~~~~~~~~i~~~~~~i~l~l~Dt~G~~~~~~~~~~~~~~ad~~v 83 (210)
T PLN03108 4 AYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGAL 83 (210)
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEEE
Confidence 4569999999999999999999999998888888887666 446677888889999999999999988899999999999
Q ss_pred EEEeCCChhhHHhhhhhhHHHHHhhhC-CCCCEEEEeeCcccccCccccccCCCccc
Q 044772 99 LAFSLISRPSYENISKKKWVPELRHYA-PSVPIVLVGTKLDLRKDRQFHLDYPGAYT 154 (159)
Q Consensus 99 ~v~d~~~~~s~~~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~r~v~~~~~~~~~ 154 (159)
+|||++++++|..+. .|+..+.... ++.|+++|+||+|+...+.++.+++++++
T Consensus 84 lv~D~~~~~s~~~l~--~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~ 138 (210)
T PLN03108 84 LVYDITRRETFNHLA--SWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFA 138 (210)
T ss_pred EEEECCcHHHHHHHH--HHHHHHHHhcCCCCcEEEEEECccCccccCCCHHHHHHHH
Confidence 999999999999988 8988877654 57999999999999988888877766554
No 76
>KOG0097 consensus GTPase Rab14, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=2.6e-28 Score=162.05 Aligned_cols=136 Identities=29% Similarity=0.586 Sum_probs=125.9
Q ss_pred CcceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeee-EEEEEECCeEEEEEEEeCCCcccccccccccccCCcE
Q 044772 18 TATKFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNF-SANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADV 96 (159)
Q Consensus 18 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ 96 (159)
..+..+|.+++|+-|+|||+|+++|...+|..+...|++..+ ...+.+.+.++++++||+.|+++|+...+.|++.+.+
T Consensus 7 nysyifkyiiigdmgvgkscllhqftekkfmadcphtigvefgtriievsgqkiklqiwdtagqerfravtrsyyrgaag 86 (215)
T KOG0097|consen 7 NYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAG 86 (215)
T ss_pred chhheEEEEEEccccccHHHHHHHHHHHHHhhcCCcccceecceeEEEecCcEEEEEEeecccHHHHHHHHHHHhccccc
Confidence 346788999999999999999999999999988888999888 5577889999999999999999999999999999999
Q ss_pred EEEEEeCCChhhHHhhhhhhHHHHHhhhC-CCCCEEEEeeCcccccCccccccCCCcccc
Q 044772 97 FILAFSLISRPSYENISKKKWVPELRHYA-PSVPIVLVGTKLDLRKDRQFHLDYPGAYTI 155 (159)
Q Consensus 97 ~i~v~d~~~~~s~~~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~r~v~~~~~~~~~~ 155 (159)
.++|||++.+.+++.+. .|+...+..- ++..|+++|||.||+.+|.|+.|++++||.
T Consensus 87 almvyditrrstynhls--swl~dar~ltnpnt~i~lignkadle~qrdv~yeeak~fae 144 (215)
T KOG0097|consen 87 ALMVYDITRRSTYNHLS--SWLTDARNLTNPNTVIFLIGNKADLESQRDVTYEEAKEFAE 144 (215)
T ss_pred eeEEEEehhhhhhhhHH--HHHhhhhccCCCceEEEEecchhhhhhcccCcHHHHHHHHh
Confidence 99999999999999999 9998887654 788899999999999999999999999875
No 77
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=99.95 E-value=3.5e-27 Score=165.59 Aligned_cols=119 Identities=60% Similarity=1.069 Sum_probs=107.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEEEEe
Q 044772 23 IKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFS 102 (159)
Q Consensus 23 ~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d 102 (159)
.||+++|++|||||||+++|.++.+...+.++.+..+...+.+++..+.+.+||++|++.+...+..++.+++++++|||
T Consensus 2 ~ki~iiG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~~ 81 (175)
T cd01870 2 KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFS 81 (175)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccceEEEEEECCEEEEEEEEeCCCchhhhhccccccCCCCEEEEEEE
Confidence 68999999999999999999999998888899887776677788888999999999999998888889999999999999
Q ss_pred CCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCcccccC
Q 044772 103 LISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKD 142 (159)
Q Consensus 103 ~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~ 142 (159)
++++++|..+.. .|+..+....++.|+++|+||+|+.+.
T Consensus 82 ~~~~~s~~~~~~-~~~~~~~~~~~~~piilv~nK~Dl~~~ 120 (175)
T cd01870 82 IDSPDSLENIPE-KWTPEVKHFCPNVPIILVGNKKDLRND 120 (175)
T ss_pred CCCHHHHHHHHH-HHHHHHHhhCCCCCEEEEeeChhcccC
Confidence 999999998865 799888877778999999999998653
No 78
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.95 E-value=2e-27 Score=169.69 Aligned_cols=128 Identities=34% Similarity=0.664 Sum_probs=110.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCC-CCcccceeeeeE-EEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEEE
Q 044772 23 IKCVTVRDGAVGKTCLLISYTGNTFP-TDYVPTVFDNFS-ANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADVFILA 100 (159)
Q Consensus 23 ~ki~vvG~~~~GKSsli~~l~~~~~~-~~~~~t~~~~~~-~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v 100 (159)
+||+++|++|||||||+++|..+.+. ..+.++.+..+. ..+.+++..+.++|||++|++.+...+..++++++++|+|
T Consensus 1 ~Ki~vvG~~~vGKTSli~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~i~v 80 (191)
T cd04112 1 FKVMLLGDSGVGKTCLLVRFKDGAFLNGNFIATVGIDFRNKVVTVDGVKVKLQIWDTAGQERFRSVTHAYYRDAHALLLL 80 (191)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCccCcCCcccceeEEEEEEECCEEEEEEEEeCCCcHHHHHhhHHHccCCCEEEEE
Confidence 58999999999999999999999886 367777776664 3567788889999999999999988888999999999999
Q ss_pred EeCCChhhHHhhhhhhHHHHHhhhC-CCCCEEEEeeCcccccCccccccCCCc
Q 044772 101 FSLISRPSYENISKKKWVPELRHYA-PSVPIVLVGTKLDLRKDRQFHLDYPGA 152 (159)
Q Consensus 101 ~d~~~~~s~~~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~r~v~~~~~~~ 152 (159)
||++++++|..+. .|+..+.... .++|+++|+||+|+...+.+..++++.
T Consensus 81 ~D~~~~~s~~~~~--~~~~~i~~~~~~~~piiiv~NK~Dl~~~~~~~~~~~~~ 131 (191)
T cd04112 81 YDITNKASFDNIR--AWLTEIKEYAQEDVVIMLLGNKADMSGERVVKREDGER 131 (191)
T ss_pred EECCCHHHHHHHH--HHHHHHHHhCCCCCcEEEEEEcccchhccccCHHHHHH
Confidence 9999999999998 8999988876 479999999999998777776655443
No 79
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=99.95 E-value=2.4e-27 Score=164.20 Aligned_cols=128 Identities=35% Similarity=0.584 Sum_probs=109.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeee-EEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEEEE
Q 044772 23 IKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNF-SANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAF 101 (159)
Q Consensus 23 ~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 101 (159)
+||+++|++|||||||+++|++..+...+.++.+..+ ...+..++..+++++||+||++.+..++..++++++++++||
T Consensus 1 ~ki~liG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~ii~v~ 80 (161)
T cd01861 1 HKLVFLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSKTMYLEDKTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCccCCCceeeeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEEEE
Confidence 4899999999999999999999998877777777655 456677777788999999999999999999999999999999
Q ss_pred eCCChhhHHhhhhhhHHHHHhhhCC-CCCEEEEeeCcccccCccccccCCCc
Q 044772 102 SLISRPSYENISKKKWVPELRHYAP-SVPIVLVGTKLDLRKDRQFHLDYPGA 152 (159)
Q Consensus 102 d~~~~~s~~~~~~~~~~~~i~~~~~-~~piilv~nK~Dl~~~r~v~~~~~~~ 152 (159)
|++++++|..+. .|+..+..... +.|+++++||+|+...+++..++...
T Consensus 81 d~~~~~s~~~~~--~~~~~~~~~~~~~~~iilv~nK~D~~~~~~~~~~~~~~ 130 (161)
T cd01861 81 DITNRQSFDNTD--KWIDDVRDERGNDVIIVLVGNKTDLSDKRQVSTEEGEK 130 (161)
T ss_pred ECcCHHHHHHHH--HHHHHHHHhCCCCCEEEEEEEChhccccCccCHHHHHH
Confidence 999999999988 89998876553 79999999999997766666554433
No 80
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=99.95 E-value=2e-27 Score=173.03 Aligned_cols=127 Identities=32% Similarity=0.469 Sum_probs=105.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEEEEe
Q 044772 23 IKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFS 102 (159)
Q Consensus 23 ~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d 102 (159)
+||+++|.+|||||||+++|+.+.|.. +.+|.+..+... ....+.+.+||++|++.+..++..++++++++|+|||
T Consensus 1 ~KIvivG~~~vGKTSLi~r~~~~~f~~-~~~Tig~~~~~~---~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~IlV~D 76 (220)
T cd04126 1 LKVVLLGDMNVGKTSLLHRYMERRFKD-TVSTVGGAFYLK---QWGPYNISIWDTAGREQFHGLGSMYCRGAAAVILTYD 76 (220)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCCCC-CCCccceEEEEE---EeeEEEEEEEeCCCcccchhhHHHHhccCCEEEEEEE
Confidence 589999999999999999999999864 567766544321 1245789999999999999999999999999999999
Q ss_pred CCChhhHHhhhhhhHHHHHhhh-CCCCCEEEEeeCccccc-------------------CccccccCCCcccc
Q 044772 103 LISRPSYENISKKKWVPELRHY-APSVPIVLVGTKLDLRK-------------------DRQFHLDYPGAYTI 155 (159)
Q Consensus 103 ~~~~~s~~~~~~~~~~~~i~~~-~~~~piilv~nK~Dl~~-------------------~r~v~~~~~~~~~~ 155 (159)
++++++|..+. .|+..+.+. .+++|++|||||+|+.+ .|+|+.++++.||.
T Consensus 77 vt~~~Sf~~l~--~~~~~l~~~~~~~~piIlVgNK~DL~~~~~~~~~~~~~~~~~~~~~~r~v~~~e~~~~a~ 147 (220)
T cd04126 77 VSNVQSLEELE--DRFLGLTDTANEDCLFAVVGNKLDLTEEGALAGQEKDAGDRVSPEDQRQVTLEDAKAFYK 147 (220)
T ss_pred CCCHHHHHHHH--HHHHHHHHhcCCCCcEEEEEECcccccccccccccccccccccccccccCCHHHHHHHHH
Confidence 99999999998 666555544 35799999999999976 78888888877763
No 81
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=99.95 E-value=3.1e-27 Score=165.22 Aligned_cols=128 Identities=33% Similarity=0.546 Sum_probs=112.9
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEEEE
Q 044772 22 FIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAF 101 (159)
Q Consensus 22 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 101 (159)
.+||+++|++|||||||++++.++.+...+.++.+..+...+..++..+.+++||++|++.|..++..+++.++++++||
T Consensus 1 ~~ki~liG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~vlv~ 80 (168)
T cd04177 1 DYKIVVLGAGGVGKSALTVQFVQNVFIESYDPTIEDSYRKQVEIDGRQCDLEILDTAGTEQFTAMRELYIKSGQGFLLVY 80 (168)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheEEEEEEECCEEEEEEEEeCCCcccchhhhHHHHhhCCEEEEEE
Confidence 37899999999999999999999999888888888777777778888899999999999999999999999999999999
Q ss_pred eCCChhhHHhhhhhhHHHHHhhhC--CCCCEEEEeeCcccccCccccccCCC
Q 044772 102 SLISRPSYENISKKKWVPELRHYA--PSVPIVLVGTKLDLRKDRQFHLDYPG 151 (159)
Q Consensus 102 d~~~~~s~~~~~~~~~~~~i~~~~--~~~piilv~nK~Dl~~~r~v~~~~~~ 151 (159)
|++++++|+.+. .|...+.+.. .+.|+++++||+|+...+.++.+++.
T Consensus 81 ~~~~~~s~~~~~--~~~~~i~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~ 130 (168)
T cd04177 81 SVTSEASLNELG--ELREQVLRIKDSDNVPMVLVGNKADLEDDRQVSREDGV 130 (168)
T ss_pred ECCCHHHHHHHH--HHHHHHHHhhCCCCCCEEEEEEChhccccCccCHHHHH
Confidence 999999999998 8888877543 47999999999999887776655443
No 82
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=99.95 E-value=4.5e-27 Score=167.80 Aligned_cols=117 Identities=37% Similarity=0.627 Sum_probs=105.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCC-Ccccceeeee-EEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEEE
Q 044772 23 IKCVTVRDGAVGKTCLLISYTGNTFPT-DYVPTVFDNF-SANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADVFILA 100 (159)
Q Consensus 23 ~ki~vvG~~~~GKSsli~~l~~~~~~~-~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v 100 (159)
+||+++|++|||||||+++|+.+.+.. .+.+|.+..+ ...+.+++..+.+.+||++|++.+..++..++.+++++++|
T Consensus 1 ~ki~vvG~~~vGKSsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~iilv 80 (193)
T cd04118 1 VKVVMLGKESVGKTSLVERYVHHRFLVGPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGSERYEAMSRIYYRGAKAAIVC 80 (193)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCcCCcCcccceeeEEEEEEEEECCEEEEEEEEECCCchhhhhhhHhhcCCCCEEEEE
Confidence 489999999999999999999999874 6888887766 44677888889999999999999998988999999999999
Q ss_pred EeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCccccc
Q 044772 101 FSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRK 141 (159)
Q Consensus 101 ~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~ 141 (159)
||++++.+|..+. .|+..+....++.|+++|+||+|+.+
T Consensus 81 ~d~~~~~s~~~~~--~~~~~i~~~~~~~piilv~nK~Dl~~ 119 (193)
T cd04118 81 YDLTDSSSFERAK--FWVKELQNLEEHCKIYLCGTKSDLIE 119 (193)
T ss_pred EECCCHHHHHHHH--HHHHHHHhcCCCCCEEEEEEcccccc
Confidence 9999999999987 89999887767899999999999854
No 83
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=99.95 E-value=3.5e-27 Score=163.88 Aligned_cols=125 Identities=36% Similarity=0.609 Sum_probs=106.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcC--CCCCCcccceeeee-EEEEEEC-CeEEEEEEEeCCCcccccccccccccCCcEEE
Q 044772 23 IKCVTVRDGAVGKTCLLISYTGN--TFPTDYVPTVFDNF-SANVMVD-GRTVNLGLWDTAGQEDYNRLRPLSYRGADVFI 98 (159)
Q Consensus 23 ~ki~vvG~~~~GKSsli~~l~~~--~~~~~~~~t~~~~~-~~~~~~~-~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i 98 (159)
+||+++|++|||||||++++..+ .+...+.++.+..+ ...+..+ +..+++.+||++|++.+..++..++.++|+++
T Consensus 1 ~ki~vvG~~~~GKtsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii 80 (164)
T cd04101 1 LRCAVVGDPAVGKTAFVQMFHSNGAVFPKNYLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQELYSDMVSNYWESPSVFI 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCccCCCceEEEEEEEEEEeCCCCEEEEEEEECCCHHHHHHHHHHHhCCCCEEE
Confidence 58999999999999999999865 67788888887655 3445554 56789999999999999888899999999999
Q ss_pred EEEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCcccccCccccccC
Q 044772 99 LAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKDRQFHLDY 149 (159)
Q Consensus 99 ~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~r~v~~~~ 149 (159)
+|||++++++|..+. .|++.+.....+.|+++|+||+|+..++++..++
T Consensus 81 ~v~d~~~~~s~~~~~--~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~ 129 (164)
T cd04101 81 LVYDVSNKASFENCS--RWVNKVRTASKHMPGVLVGNKMDLADKAEVTDAQ 129 (164)
T ss_pred EEEECcCHHHHHHHH--HHHHHHHHhCCCCCEEEEEECcccccccCCCHHH
Confidence 999999999999887 9999988776789999999999998776665433
No 84
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=99.95 E-value=4.5e-27 Score=163.06 Aligned_cols=129 Identities=40% Similarity=0.716 Sum_probs=111.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeee-EEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEEEE
Q 044772 23 IKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNF-SANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAF 101 (159)
Q Consensus 23 ~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 101 (159)
+||+++|++|+|||||++++.+..+...+.++.+..+ ...+..++..+.+++||++|++.+...+..+++.+|++|+||
T Consensus 1 ~kv~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~ilv~ 80 (164)
T smart00175 1 FKIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQERFRSITSSYYRGAVGALLVY 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhCCCCEEEEEE
Confidence 5899999999999999999999998877778877665 346677788889999999999999989999999999999999
Q ss_pred eCCChhhHHhhhhhhHHHHHhhhC-CCCCEEEEeeCcccccCccccccCCCcc
Q 044772 102 SLISRPSYENISKKKWVPELRHYA-PSVPIVLVGTKLDLRKDRQFHLDYPGAY 153 (159)
Q Consensus 102 d~~~~~s~~~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~r~v~~~~~~~~ 153 (159)
|+++++++..+. .|+..+..+. +++|+++|+||+|+...+++..++++.+
T Consensus 81 d~~~~~s~~~~~--~~l~~~~~~~~~~~pivvv~nK~D~~~~~~~~~~~~~~~ 131 (164)
T smart00175 81 DITNRESFENLK--NWLKELREYADPNVVIMLVGNKSDLEDQRQVSREEAEAF 131 (164)
T ss_pred ECCCHHHHHHHH--HHHHHHHHhCCCCCeEEEEEEchhcccccCCCHHHHHHH
Confidence 999999999988 8999888776 6899999999999987666665544443
No 85
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=99.95 E-value=5.9e-27 Score=168.24 Aligned_cols=127 Identities=24% Similarity=0.424 Sum_probs=104.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeee-EEEEEECCeEEEEEEEeCCCcccccc--------cccccccC
Q 044772 23 IKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNF-SANVMVDGRTVNLGLWDTAGQEDYNR--------LRPLSYRG 93 (159)
Q Consensus 23 ~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~--------~~~~~~~~ 93 (159)
+||+++|.+|||||||+++|.++.|...+.|+.+... ...+..++..+.+++||++|.+.+.. ....++++
T Consensus 1 ~kI~ivG~~~vGKTsLi~~~~~~~f~~~~~pt~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~~~~~e~~~~~~~~~~~ 80 (198)
T cd04142 1 VRVAVLGAPGVGKTAIVRQFLAQEFPEEYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQRYPGTAGQEWMDPRFRGLRN 80 (198)
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCCCcccCCccccccceeEEEECCEEEEEEEEeCCCcccCCccchhHHHHHHHhhhcc
Confidence 5899999999999999999999999888888886443 44566788889999999999755421 12345789
Q ss_pred CcEEEEEEeCCChhhHHhhhhhhHHHHHhhhC----CCCCEEEEeeCcccccCccccccCCC
Q 044772 94 ADVFILAFSLISRPSYENISKKKWVPELRHYA----PSVPIVLVGTKLDLRKDRQFHLDYPG 151 (159)
Q Consensus 94 ~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~----~~~piilv~nK~Dl~~~r~v~~~~~~ 151 (159)
+|++|+|||++++++|+.+. .|+..+.... .++|++||+||+|+.+.+.+..++.+
T Consensus 81 ad~iilv~D~~~~~S~~~~~--~~~~~i~~~~~~~~~~~piiivgNK~Dl~~~~~~~~~~~~ 140 (198)
T cd04142 81 SRAFILVYDICSPDSFHYVK--LLRQQILETRPAGNKEPPIVVVGNKRDQQRHRFAPRHVLS 140 (198)
T ss_pred CCEEEEEEECCCHHHHHHHH--HHHHHHHHhcccCCCCCCEEEEEECccccccccccHHHHH
Confidence 99999999999999999998 8888777653 57999999999999887777665443
No 86
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=99.95 E-value=8.7e-27 Score=167.51 Aligned_cols=116 Identities=30% Similarity=0.559 Sum_probs=104.6
Q ss_pred EcCCCCCHHHHHHHHhcCCCCCCcccceeeee-EEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCh
Q 044772 28 VRDGAVGKTCLLISYTGNTFPTDYVPTVFDNF-SANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISR 106 (159)
Q Consensus 28 vG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~ 106 (159)
+|.+|||||||+++++.+.+...+.+|.+..+ ...+.+++..+.+.+||++|++.|..++..++++++++|+|||++++
T Consensus 1 vG~~~vGKTsLi~r~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~ilV~D~t~~ 80 (200)
T smart00176 1 VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTAR 80 (200)
T ss_pred CCCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhcCCCEEEEEEECCCh
Confidence 69999999999999999999888899987666 45667788889999999999999999999999999999999999999
Q ss_pred hhHHhhhhhhHHHHHhhhCCCCCEEEEeeCcccccCcccc
Q 044772 107 PSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKDRQFH 146 (159)
Q Consensus 107 ~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~r~v~ 146 (159)
++|..+. .|+..+.+..+++|++|||||+|+.. +.+.
T Consensus 81 ~S~~~i~--~w~~~i~~~~~~~piilvgNK~Dl~~-~~v~ 117 (200)
T smart00176 81 VTYKNVP--NWHRDLVRVCENIPIVLCGNKVDVKD-RKVK 117 (200)
T ss_pred HHHHHHH--HHHHHHHHhCCCCCEEEEEECccccc-ccCC
Confidence 9999998 99999998888999999999999964 4444
No 87
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=99.94 E-value=8e-27 Score=161.84 Aligned_cols=127 Identities=38% Similarity=0.653 Sum_probs=110.7
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeee-EEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEEE
Q 044772 22 FIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNF-SANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADVFILA 100 (159)
Q Consensus 22 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v 100 (159)
.+||+++|++|+|||||+++++++++...+.++.+..+ ...+.+++..+.+.+||++|++.+...+..++++++++++|
T Consensus 1 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v 80 (163)
T cd01860 1 QFKLVLLGDSSVGKSSLVLRFVKNEFSENQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQERYRSLAPMYYRGAAAAIVV 80 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhccCCEEEEE
Confidence 37999999999999999999999998876777777655 55778888889999999999999988888899999999999
Q ss_pred EeCCChhhHHhhhhhhHHHHHhhhC-CCCCEEEEeeCcccccCccccccCC
Q 044772 101 FSLISRPSYENISKKKWVPELRHYA-PSVPIVLVGTKLDLRKDRQFHLDYP 150 (159)
Q Consensus 101 ~d~~~~~s~~~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~r~v~~~~~ 150 (159)
||++++++|..+. .|+..+.... +.+|+++++||+|+...+.+..++.
T Consensus 81 ~d~~~~~s~~~~~--~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~ 129 (163)
T cd01860 81 YDITSEESFEKAK--SWVKELQRNASPNIIIALVGNKADLESKRQVSTEEA 129 (163)
T ss_pred EECcCHHHHHHHH--HHHHHHHHhCCCCCeEEEEEECccccccCcCCHHHH
Confidence 9999999999998 8988887766 6799999999999987666555443
No 88
>PLN03118 Rab family protein; Provisional
Probab=99.94 E-value=1.2e-26 Score=168.04 Aligned_cols=133 Identities=31% Similarity=0.536 Sum_probs=110.3
Q ss_pred CcceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeee-EEEEEECCeEEEEEEEeCCCcccccccccccccCCcE
Q 044772 18 TATKFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNF-SANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADV 96 (159)
Q Consensus 18 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ 96 (159)
.....+||+++|++|||||||+++|+++.+. .+.++.+..+ ...+.+++..+.+.+||++|++.+..++..+++++++
T Consensus 10 ~~~~~~kv~ivG~~~vGKTsli~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ 88 (211)
T PLN03118 10 GYDLSFKILLIGDSGVGKSSLLVSFISSSVE-DLAPTIGVDFKIKQLTVGGKRLKLTIWDTAGQERFRTLTSSYYRNAQG 88 (211)
T ss_pred ccCcceEEEEECcCCCCHHHHHHHHHhCCCC-CcCCCceeEEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhcCCE
Confidence 3345799999999999999999999988874 5677776655 3456677878899999999999999999999999999
Q ss_pred EEEEEeCCChhhHHhhhhhhHHHHHhhhC--CCCCEEEEeeCcccccCccccccCCCc
Q 044772 97 FILAFSLISRPSYENISKKKWVPELRHYA--PSVPIVLVGTKLDLRKDRQFHLDYPGA 152 (159)
Q Consensus 97 ~i~v~d~~~~~s~~~~~~~~~~~~i~~~~--~~~piilv~nK~Dl~~~r~v~~~~~~~ 152 (159)
+|+|||++++++|..+.. .|...+..+. .+.|++||+||+|+...+.++.+++..
T Consensus 89 ~vlv~D~~~~~sf~~~~~-~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~i~~~~~~~ 145 (211)
T PLN03118 89 IILVYDVTRRETFTNLSD-VWGKEVELYSTNQDCVKMLVGNKVDRESERDVSREEGMA 145 (211)
T ss_pred EEEEEECCCHHHHHHHHH-HHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHH
Confidence 999999999999999975 5777665443 468999999999998877776555544
No 89
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=99.94 E-value=8.1e-27 Score=162.81 Aligned_cols=118 Identities=19% Similarity=0.255 Sum_probs=102.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEEEEeC
Q 044772 24 KCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSL 103 (159)
Q Consensus 24 ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~ 103 (159)
.|+++|++|||||||+++|.++.+...+.||.+..+ ..++...+.+.+||++|++.+..++..++++++++|+|||.
T Consensus 1 ~i~ivG~~~vGKTsli~~~~~~~~~~~~~pt~g~~~---~~i~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~ 77 (164)
T cd04162 1 QILVLGLDGAGKTSLLHSLSSERSLESVVPTTGFNS---VAIPTQDAIMELLEIGGSQNLRKYWKRYLSGSQGLIFVVDS 77 (164)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCCcccccccCCcce---EEEeeCCeEEEEEECCCCcchhHHHHHHHhhCCEEEEEEEC
Confidence 479999999999999999999888888888877543 23445567899999999999999999999999999999999
Q ss_pred CChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCcccccCcccc
Q 044772 104 ISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKDRQFH 146 (159)
Q Consensus 104 ~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~r~v~ 146 (159)
+++.+|..+. .|+..+....+++|+++|+||+|+...+.++
T Consensus 78 t~~~s~~~~~--~~l~~~~~~~~~~piilv~NK~Dl~~~~~~~ 118 (164)
T cd04162 78 ADSERLPLAR--QELHQLLQHPPDLPLVVLANKQDLPAARSVQ 118 (164)
T ss_pred CCHHHHHHHH--HHHHHHHhCCCCCcEEEEEeCcCCcCCCCHH
Confidence 9999999887 7888776555789999999999998877665
No 90
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=99.94 E-value=6.1e-26 Score=158.46 Aligned_cols=121 Identities=69% Similarity=1.221 Sum_probs=108.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEEEEe
Q 044772 23 IKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFS 102 (159)
Q Consensus 23 ~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d 102 (159)
+||+++|++|+|||||+++|.++.+...+.++....+......++..+.+++||++|++.+......+++.++++++|||
T Consensus 1 iki~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d 80 (171)
T cd00157 1 IKIVVVGDGAVGKTCLLISYTTGKFPTEYVPTVFDNYSATVTVDGKQVNLGLWDTAGQEEYDRLRPLSYPNTDVFLICFS 80 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeEEEEEECCEEEEEEEEeCCCcccccccchhhcCCCCEEEEEEE
Confidence 58999999999999999999999998778888877776667778888999999999999888888888899999999999
Q ss_pred CCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCcccccCcc
Q 044772 103 LISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKDRQ 144 (159)
Q Consensus 103 ~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~r~ 144 (159)
++++++|..... .|+..+.....+.|+++|+||+|+.+.+.
T Consensus 81 ~~~~~s~~~~~~-~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~ 121 (171)
T cd00157 81 VDSPSSFENVKT-KWIPEIRHYCPNVPIILVGTKIDLRDDEN 121 (171)
T ss_pred CCCHHHHHHHHH-HHHHHHHhhCCCCCEEEEEccHHhhhchh
Confidence 999999988876 89998888778999999999999976653
No 91
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=99.94 E-value=1.8e-26 Score=168.31 Aligned_cols=127 Identities=28% Similarity=0.400 Sum_probs=105.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCC-CCccccee-eeeEEEEEECCeEEEEEEEeCCCccccccccccccc-CCcEEEE
Q 044772 23 IKCVTVRDGAVGKTCLLISYTGNTFP-TDYVPTVF-DNFSANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYR-GADVFIL 99 (159)
Q Consensus 23 ~ki~vvG~~~~GKSsli~~l~~~~~~-~~~~~t~~-~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~-~~~~~i~ 99 (159)
+||+++|++|||||||+++|..+.+. ..+.++.+ ..+...+.+++..+.+.+||++|++. .....++. ++|++++
T Consensus 1 ~KI~lvG~~gvGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~--~~~~~~~~~~ad~iil 78 (221)
T cd04148 1 YRVVMLGSPGVGKSSLASQFTSGEYDDHAYDASGDDDTYERTVSVDGEESTLVVIDHWEQEM--WTEDSCMQYQGDAFVV 78 (221)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCcCccCcCCCccccceEEEEEECCEEEEEEEEeCCCcch--HHHhHHhhcCCCEEEE
Confidence 58999999999999999999988886 66777765 44466777888889999999999982 22344566 8999999
Q ss_pred EEeCCChhhHHhhhhhhHHHHHhhhC--CCCCEEEEeeCcccccCccccccCCCcc
Q 044772 100 AFSLISRPSYENISKKKWVPELRHYA--PSVPIVLVGTKLDLRKDRQFHLDYPGAY 153 (159)
Q Consensus 100 v~d~~~~~s~~~~~~~~~~~~i~~~~--~~~piilv~nK~Dl~~~r~v~~~~~~~~ 153 (159)
|||++++++|..+. .|+..+.... .++|+++|+||+|+.+.++++.++++++
T Consensus 79 V~d~td~~S~~~~~--~~~~~l~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~ 132 (221)
T cd04148 79 VYSVTDRSSFERAS--ELRIQLRRNRQLEDRPIILVGNKSDLARSREVSVQEGRAC 132 (221)
T ss_pred EEECCCHHHHHHHH--HHHHHHHHhcCCCCCCEEEEEEChhccccceecHHHHHHH
Confidence 99999999999988 8888887754 5899999999999988888887765544
No 92
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=99.94 E-value=2.4e-26 Score=160.68 Aligned_cols=125 Identities=35% Similarity=0.652 Sum_probs=105.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeee-EEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEEEE
Q 044772 23 IKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNF-SANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAF 101 (159)
Q Consensus 23 ~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 101 (159)
+||+++|++|||||||++++.++.+...+.++.+..+ ...+.+++..+.+++||++|++.+...+..++++++++|++|
T Consensus 1 ~ki~viG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~ 80 (172)
T cd01862 1 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVTVDDKLVTLQIWDTAGQERFQSLGVAFYRGADCCVLVY 80 (172)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCcCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHhHHHHHhcCCCEEEEEE
Confidence 5899999999999999999999998877777776555 445677888889999999999999989999999999999999
Q ss_pred eCCChhhHHhhhhhhHHHHHhhhCC-----CCCEEEEeeCcccccCccccccC
Q 044772 102 SLISRPSYENISKKKWVPELRHYAP-----SVPIVLVGTKLDLRKDRQFHLDY 149 (159)
Q Consensus 102 d~~~~~s~~~~~~~~~~~~i~~~~~-----~~piilv~nK~Dl~~~r~v~~~~ 149 (159)
|++++.+|..+. .|...+..... ++|+++|+||+|+...+.++.++
T Consensus 81 d~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~ 131 (172)
T cd01862 81 DVTNPKSFESLD--SWRDEFLIQASPSDPENFPFVVLGNKIDLEEKRQVSTKK 131 (172)
T ss_pred ECCCHHHHHHHH--HHHHHHHHhcCccCCCCceEEEEEECcccccccccCHHH
Confidence 999999998887 88877655543 79999999999998655544444
No 93
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=99.94 E-value=3.7e-26 Score=157.90 Aligned_cols=125 Identities=35% Similarity=0.684 Sum_probs=106.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeee-EEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEEEE
Q 044772 23 IKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNF-SANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAF 101 (159)
Q Consensus 23 ~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 101 (159)
+||+++|++|+|||||+++|+.+.+...+.++....+ ...+...+..+.+.+||++|++.+...+..++++++++++||
T Consensus 1 ~ki~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (162)
T cd04123 1 FKVVLLGEGRVGKTSLVLRYVENKFNEKHESTTQASFFQKTVNIGGKRIDLAIWDTAGQERYHALGPIYYRDADGAILVY 80 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCccceeEEEEEEEECCEEEEEEEEECCchHHHHHhhHHHhccCCEEEEEE
Confidence 5899999999999999999999988776666664444 445666677788999999999999989999999999999999
Q ss_pred eCCChhhHHhhhhhhHHHHHhhhCC-CCCEEEEeeCcccccCccccccC
Q 044772 102 SLISRPSYENISKKKWVPELRHYAP-SVPIVLVGTKLDLRKDRQFHLDY 149 (159)
Q Consensus 102 d~~~~~s~~~~~~~~~~~~i~~~~~-~~piilv~nK~Dl~~~r~v~~~~ 149 (159)
|+++++++..+. .|++.+..... ++|+++|+||+|+...+++..++
T Consensus 81 d~~~~~s~~~~~--~~~~~i~~~~~~~~piiiv~nK~D~~~~~~~~~~~ 127 (162)
T cd04123 81 DITDADSFQKVK--KWIKELKQMRGNNISLVIVGNKIDLERQRVVSKSE 127 (162)
T ss_pred ECCCHHHHHHHH--HHHHHHHHhCCCCCeEEEEEECcccccccCCCHHH
Confidence 999999999988 89988887764 78999999999998776665443
No 94
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=99.94 E-value=6.6e-26 Score=161.31 Aligned_cols=118 Identities=53% Similarity=0.936 Sum_probs=104.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEEEEe
Q 044772 23 IKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFS 102 (159)
Q Consensus 23 ~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d 102 (159)
.|++++|++|+|||||++++..+.+...+.++....+...+.+++..+.+.+||++|++.+......++.++++++++||
T Consensus 2 ~Ki~ivG~~g~GKStLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~a~~~llv~~ 81 (187)
T cd04129 2 RKLVIVGDGACGKTSLLSVFTLGEFPEEYHPTVFENYVTDCRVDGKPVQLALWDTAGQEEYERLRPLSYSKAHVILIGFA 81 (187)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEECCEEEEEEEEECCCChhccccchhhcCCCCEEEEEEE
Confidence 58999999999999999999988888777788777776666778888889999999998888777778899999999999
Q ss_pred CCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCccccc
Q 044772 103 LISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRK 141 (159)
Q Consensus 103 ~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~ 141 (159)
++++++|..+.. .|+..+....+++|+++||||+|+.+
T Consensus 82 i~~~~s~~~~~~-~~~~~i~~~~~~~piilvgnK~Dl~~ 119 (187)
T cd04129 82 VDTPDSLENVRT-KWIEEVRRYCPNVPVILVGLKKDLRQ 119 (187)
T ss_pred CCCHHHHHHHHH-HHHHHHHHhCCCCCEEEEeeChhhhh
Confidence 999999999875 79999988778899999999999964
No 95
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=99.94 E-value=7.2e-26 Score=156.86 Aligned_cols=116 Identities=37% Similarity=0.713 Sum_probs=102.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeeeE-EEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEEEE
Q 044772 23 IKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFS-ANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAF 101 (159)
Q Consensus 23 ~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 101 (159)
+||+++|++|+|||||+++|.++.+...+.++.+..+. ..+.+++..+.+.+||++|++.+...+..+++.+|++++||
T Consensus 1 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~ 80 (161)
T cd01863 1 LKILLIGDSGVGKSSLLLRFTDDTFDPDLAATIGVDFKVKTLTVDGKKVKLAIWDTAGQERFRTLTSSYYRGAQGVILVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCcccCCcccceEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhCCCCEEEEEE
Confidence 58999999999999999999999887777777776653 45567777889999999999999888899999999999999
Q ss_pred eCCChhhHHhhhhhhHHHHHhhhC--CCCCEEEEeeCcccc
Q 044772 102 SLISRPSYENISKKKWVPELRHYA--PSVPIVLVGTKLDLR 140 (159)
Q Consensus 102 d~~~~~s~~~~~~~~~~~~i~~~~--~~~piilv~nK~Dl~ 140 (159)
|++++++|..+. .|+..+..+. .+.|+++|+||+|+.
T Consensus 81 d~~~~~s~~~~~--~~~~~i~~~~~~~~~~~~iv~nK~D~~ 119 (161)
T cd01863 81 DVTRRDTFTNLE--TWLNELETYSTNNDIVKMLVGNKIDKE 119 (161)
T ss_pred ECCCHHHHHhHH--HHHHHHHHhCCCCCCcEEEEEECCccc
Confidence 999999999888 8999888775 589999999999997
No 96
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.93 E-value=2.3e-25 Score=155.56 Aligned_cols=121 Identities=28% Similarity=0.448 Sum_probs=100.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEEEEe
Q 044772 23 IKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFS 102 (159)
Q Consensus 23 ~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d 102 (159)
+||+++|++|||||||+++|..+.+...+.++. ..+.....+++..+.+.+||++|.+.+...+..++..++++++|||
T Consensus 1 ~kv~ivG~~~vGKTsl~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d 79 (166)
T cd01893 1 VRIVLIGDEGVGKSSLIMSLVSEEFPENVPRVL-PEITIPADVTPERVPTTIVDTSSRPQDRANLAAEIRKANVICLVYS 79 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCccCCCcc-cceEeeeeecCCeEEEEEEeCCCchhhhHHHhhhcccCCEEEEEEE
Confidence 489999999999999999999999876644433 3333444556677899999999998887777778899999999999
Q ss_pred CCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCcccccCccc
Q 044772 103 LISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKDRQF 145 (159)
Q Consensus 103 ~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~r~v 145 (159)
++++.+|..+.. .|++.+.....+.|+++|+||+|+.+.+..
T Consensus 80 ~~~~~s~~~~~~-~~~~~i~~~~~~~pviiv~nK~Dl~~~~~~ 121 (166)
T cd01893 80 VDRPSTLERIRT-KWLPLIRRLGVKVPIILVGNKSDLRDGSSQ 121 (166)
T ss_pred CCCHHHHHHHHH-HHHHHHHHhCCCCCEEEEEEchhcccccch
Confidence 999999999865 798888876678999999999999776553
No 97
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=99.93 E-value=6.2e-26 Score=156.47 Aligned_cols=129 Identities=37% Similarity=0.637 Sum_probs=111.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEEEEeC
Q 044772 24 KCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSL 103 (159)
Q Consensus 24 ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~ 103 (159)
||+++|++|||||||++++++..+...+.++.+..+......++..+.+++||++|++.+...+..++..++++++|||+
T Consensus 1 ki~i~G~~~~GKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~ 80 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVKGTFVEEYDPTIEDSYRKTIVVDGETYTLDILDTAGQEEFSAMRDLYIRQGDGFILVYSI 80 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCcCcCCChhHeEEEEEEECCEEEEEEEEECCChHHHHHHHHHHHhcCCEEEEEEEC
Confidence 68999999999999999999988888888888766666667777788999999999998888888999999999999999
Q ss_pred CChhhHHhhhhhhHHHHHhhhCC--CCCEEEEeeCcccccCccccccCCCccc
Q 044772 104 ISRPSYENISKKKWVPELRHYAP--SVPIVLVGTKLDLRKDRQFHLDYPGAYT 154 (159)
Q Consensus 104 ~~~~s~~~~~~~~~~~~i~~~~~--~~piilv~nK~Dl~~~r~v~~~~~~~~~ 154 (159)
++++++..+. .|...+..... ..|+++|+||+|+...+.++.+++++++
T Consensus 81 ~~~~s~~~~~--~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~ 131 (160)
T cd00876 81 TDRESFEEIK--GYREQILRVKDDEDIPIVLVGNKCDLENERQVSKEEGKALA 131 (160)
T ss_pred CCHHHHHHHH--HHHHHHHHhcCCCCCcEEEEEECCcccccceecHHHHHHHH
Confidence 9999999888 77777776654 8999999999999887777666555443
No 98
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.93 E-value=2.2e-25 Score=155.51 Aligned_cols=129 Identities=32% Similarity=0.615 Sum_probs=109.7
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeee-EEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEE
Q 044772 20 TKFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNF-SANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADVFI 98 (159)
Q Consensus 20 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i 98 (159)
...+||+++|++|||||||++++..+.+...+.++.+..+ ...+.+++..+.+.+||++|++.+...+..++..+++++
T Consensus 5 ~~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i 84 (169)
T cd04114 5 DFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQERFRSITQSYYRSANALI 84 (169)
T ss_pred CceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEE
Confidence 4568999999999999999999998888777777766444 446677888889999999999989888889999999999
Q ss_pred EEEeCCChhhHHhhhhhhHHHHHhhhC-CCCCEEEEeeCcccccCccccccCC
Q 044772 99 LAFSLISRPSYENISKKKWVPELRHYA-PSVPIVLVGTKLDLRKDRQFHLDYP 150 (159)
Q Consensus 99 ~v~d~~~~~s~~~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~r~v~~~~~ 150 (159)
+|||+.++.+|..+. .|+..+.... .++|+++|+||+|+...+++..+..
T Consensus 85 ~v~d~~~~~s~~~~~--~~~~~l~~~~~~~~~~i~v~NK~D~~~~~~i~~~~~ 135 (169)
T cd04114 85 LTYDITCEESFRCLP--EWLREIEQYANNKVITILVGNKIDLAERREVSQQRA 135 (169)
T ss_pred EEEECcCHHHHHHHH--HHHHHHHHhCCCCCeEEEEEECcccccccccCHHHH
Confidence 999999999999887 8998887765 3799999999999987777665433
No 99
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=99.93 E-value=1.2e-25 Score=155.67 Aligned_cols=122 Identities=35% Similarity=0.610 Sum_probs=107.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEEEEe
Q 044772 23 IKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFS 102 (159)
Q Consensus 23 ~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d 102 (159)
+||+++|++|||||||++++..+.+...+.++....+......++..+.+.+||++|++.+...+..+++.++++++|||
T Consensus 1 ~ki~~~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d 80 (164)
T cd04139 1 YKVIVVGAGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEDVQLNILDTAGQEDYAAIRDNYHRSGEGFLLVFS 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCccccCCcchhhEEEEEEECCEEEEEEEEECCChhhhhHHHHHHhhcCCEEEEEEE
Confidence 58999999999999999999999998888888877777777788888999999999999999999999999999999999
Q ss_pred CCChhhHHhhhhhhHHHHHhhhC--CCCCEEEEeeCcccccCcccc
Q 044772 103 LISRPSYENISKKKWVPELRHYA--PSVPIVLVGTKLDLRKDRQFH 146 (159)
Q Consensus 103 ~~~~~s~~~~~~~~~~~~i~~~~--~~~piilv~nK~Dl~~~r~v~ 146 (159)
++++.+|..+. .|+..+.... .++|+++|+||+|+.+.+.+.
T Consensus 81 ~~~~~s~~~~~--~~~~~~~~~~~~~~~piiiv~NK~D~~~~~~~~ 124 (164)
T cd04139 81 ITDMESFTATA--EFREQILRVKDDDNVPLLLVGNKCDLEDKRQVS 124 (164)
T ss_pred CCCHHHHHHHH--HHHHHHHHhcCCCCCCEEEEEEccccccccccC
Confidence 99999999988 7877777663 589999999999997644443
No 100
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=99.93 E-value=1.5e-25 Score=153.65 Aligned_cols=128 Identities=41% Similarity=0.772 Sum_probs=109.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeee-EEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEEEE
Q 044772 23 IKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNF-SANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAF 101 (159)
Q Consensus 23 ~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 101 (159)
+||+++|++|||||||++++.++.+...+.++.+..+ ...+..++..+.+.+||+||+..+...+..++++++++++||
T Consensus 1 ~~i~~~G~~~~GKStl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ii~v~ 80 (159)
T cd00154 1 FKIVLIGDSGVGKTSLLLRFVDGKFDENYKSTIGVDFKSKTIEIDGKTVKLQIWDTAGQERFRSITPSYYRGAHGAILVY 80 (159)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCccCCceeeeeEEEEEEECCEEEEEEEEecCChHHHHHHHHHHhcCCCEEEEEE
Confidence 5899999999999999999999998887777777666 446666777789999999999999888999999999999999
Q ss_pred eCCChhhHHhhhhhhHHHHHhhhC-CCCCEEEEeeCcccccCccccccCCCc
Q 044772 102 SLISRPSYENISKKKWVPELRHYA-PSVPIVLVGTKLDLRKDRQFHLDYPGA 152 (159)
Q Consensus 102 d~~~~~s~~~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~r~v~~~~~~~ 152 (159)
|+++++++..+. .|+..+.... ...|+++++||+|+...+++..++.+.
T Consensus 81 d~~~~~~~~~~~--~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~ 130 (159)
T cd00154 81 DITNRESFENLD--KWLKELKEYAPENIPIILVGNKIDLEDQRQVSTEEAQQ 130 (159)
T ss_pred ECCCHHHHHHHH--HHHHHHHHhCCCCCcEEEEEEcccccccccccHHHHHH
Confidence 999999999988 8999888877 689999999999997555555554433
No 101
>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.93 E-value=5.7e-28 Score=163.06 Aligned_cols=134 Identities=36% Similarity=0.586 Sum_probs=116.5
Q ss_pred cceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeeeE-EEEEE---------CCeEEEEEEEeCCCccccccccc
Q 044772 19 ATKFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFS-ANVMV---------DGRTVNLGLWDTAGQEDYNRLRP 88 (159)
Q Consensus 19 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~---------~~~~~~~~i~D~~g~~~~~~~~~ 88 (159)
....+|++.+|++|||||||++++..++|......|.+..+. +.+-+ .+.++.+++||+.|+++|++...
T Consensus 6 ydylikfLaLGDSGVGKTs~Ly~YTD~~F~~qFIsTVGIDFreKrvvY~s~gp~g~gr~~rihLQlWDTAGQERFRSLTT 85 (219)
T KOG0081|consen 6 YDYLIKFLALGDSGVGKTSFLYQYTDGKFNTQFISTVGIDFREKRVVYNSSGPGGGGRGQRIHLQLWDTAGQERFRSLTT 85 (219)
T ss_pred HHHHHHHHhhccCCCCceEEEEEecCCcccceeEEEeecccccceEEEeccCCCCCCcceEEEEeeeccccHHHHHHHHH
Confidence 345679999999999999999999999999888888876663 23332 12468899999999999999999
Q ss_pred ccccCCcEEEEEEeCCChhhHHhhhhhhHHHHHhhh--CCCCCEEEEeeCcccccCccccccCCCccc
Q 044772 89 LSYRGADVFILAFSLISRPSYENISKKKWVPELRHY--APSVPIVLVGTKLDLRKDRQFHLDYPGAYT 154 (159)
Q Consensus 89 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~--~~~~piilv~nK~Dl~~~r~v~~~~~~~~~ 154 (159)
.+++++-+++++||+++..+|.++. .|+..+..+ ++++-|+++|||+||++.|+|+.+.+.+.|
T Consensus 86 AFfRDAMGFlLiFDlT~eqSFLnvr--nWlSQL~~hAYcE~PDivlcGNK~DL~~~R~Vs~~qa~~La 151 (219)
T KOG0081|consen 86 AFFRDAMGFLLIFDLTSEQSFLNVR--NWLSQLQTHAYCENPDIVLCGNKADLEDQRVVSEDQAAALA 151 (219)
T ss_pred HHHHhhccceEEEeccchHHHHHHH--HHHHHHHHhhccCCCCEEEEcCccchhhhhhhhHHHHHHHH
Confidence 9999999999999999999999999 999988755 478889999999999999999998877654
No 102
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=99.93 E-value=4.2e-25 Score=155.70 Aligned_cols=116 Identities=20% Similarity=0.267 Sum_probs=95.6
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEEE
Q 044772 21 KFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADVFILA 100 (159)
Q Consensus 21 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v 100 (159)
..+||+++|++|||||||++++..+.+. .+.||.+..+. .... ..+.+++||++|++.+..++..++++++++|+|
T Consensus 12 ~~~ki~l~G~~~~GKTsL~~~~~~~~~~-~~~~t~~~~~~-~~~~--~~~~l~l~D~~G~~~~~~~~~~~~~~ad~ii~v 87 (175)
T smart00177 12 KEMRILMVGLDAAGKTTILYKLKLGESV-TTIPTIGFNVE-TVTY--KNISFTVWDVGGQDKIRPLWRHYYTNTQGLIFV 87 (175)
T ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCCC-CcCCccccceE-EEEE--CCEEEEEEECCCChhhHHHHHHHhCCCCEEEEE
Confidence 4689999999999999999999887774 46777765543 2233 347799999999999999999999999999999
Q ss_pred EeCCChhhHHhhhhhhHHHHHhhh--CCCCCEEEEeeCcccccC
Q 044772 101 FSLISRPSYENISKKKWVPELRHY--APSVPIVLVGTKLDLRKD 142 (159)
Q Consensus 101 ~d~~~~~s~~~~~~~~~~~~i~~~--~~~~piilv~nK~Dl~~~ 142 (159)
||++++.+|..+. .|+..+... .+++|++||+||+|+.+.
T Consensus 88 ~D~t~~~s~~~~~--~~l~~~~~~~~~~~~piilv~NK~Dl~~~ 129 (175)
T smart00177 88 VDSNDRDRIDEAR--EELHRMLNEDELRDAVILVFANKQDLPDA 129 (175)
T ss_pred EECCCHHHHHHHH--HHHHHHhhCHhhcCCcEEEEEeCcCcccC
Confidence 9999999999887 666555432 257999999999999754
No 103
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=99.92 E-value=4e-25 Score=154.86 Aligned_cols=115 Identities=21% Similarity=0.287 Sum_probs=94.1
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEEE
Q 044772 21 KFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADVFILA 100 (159)
Q Consensus 21 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v 100 (159)
..+||+++|++|||||||+++|..+.+. .+.||.+..+. ... ...+.+++||++|++.+...+..++.+++++|+|
T Consensus 8 ~~~kv~i~G~~~~GKTsli~~l~~~~~~-~~~~t~g~~~~-~~~--~~~~~~~l~Dt~G~~~~~~~~~~~~~~a~~ii~v 83 (168)
T cd04149 8 KEMRILMLGLDAAGKTTILYKLKLGQSV-TTIPTVGFNVE-TVT--YKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFV 83 (168)
T ss_pred CccEEEEECcCCCCHHHHHHHHccCCCc-cccCCcccceE-EEE--ECCEEEEEEECCCCHHHHHHHHHHhccCCEEEEE
Confidence 4689999999999999999999987774 45677665443 222 2457899999999999998999999999999999
Q ss_pred EeCCChhhHHhhhhhhHHHHHhh-h-CCCCCEEEEeeCccccc
Q 044772 101 FSLISRPSYENISKKKWVPELRH-Y-APSVPIVLVGTKLDLRK 141 (159)
Q Consensus 101 ~d~~~~~s~~~~~~~~~~~~i~~-~-~~~~piilv~nK~Dl~~ 141 (159)
||++++.+|.++. .|+..+.. . .+++|++||+||+|+.+
T Consensus 84 ~D~t~~~s~~~~~--~~~~~~~~~~~~~~~piilv~NK~Dl~~ 124 (168)
T cd04149 84 VDSADRDRIDEAR--QELHRIINDREMRDALLLVFANKQDLPD 124 (168)
T ss_pred EeCCchhhHHHHH--HHHHHHhcCHhhcCCcEEEEEECcCCcc
Confidence 9999999999887 55555543 2 35799999999999964
No 104
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.92 E-value=2.5e-24 Score=156.31 Aligned_cols=122 Identities=30% Similarity=0.553 Sum_probs=107.9
Q ss_pred CcceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeeeEE-EEEECCeEEEEEEEeCCCcccccccccccccCCcE
Q 044772 18 TATKFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSA-NVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADV 96 (159)
Q Consensus 18 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~-~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ 96 (159)
.....+|++++|++|||||||+++++.+.+...+.+|.+..+.. .+..++..+.+++||++|++.+...+..++.++++
T Consensus 5 ~~~~~~kv~liG~~g~GKTtLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~~~~~~~~~~~~~~~~~ 84 (215)
T PTZ00132 5 DEVPEFKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNCGPICFNVWDTAGQEKFGGLRDGYYIKGQC 84 (215)
T ss_pred cCCCCceEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHhccCCE
Confidence 44566899999999999999999999999988889998876643 45557778999999999999998888889999999
Q ss_pred EEEEEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCccccc
Q 044772 97 FILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRK 141 (159)
Q Consensus 97 ~i~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~ 141 (159)
+++|||++++.+|..+. .|+..+....+++|+++++||+|+.+
T Consensus 85 ~i~v~d~~~~~s~~~~~--~~~~~i~~~~~~~~i~lv~nK~Dl~~ 127 (215)
T PTZ00132 85 AIIMFDVTSRITYKNVP--NWHRDIVRVCENIPIVLVGNKVDVKD 127 (215)
T ss_pred EEEEEECcCHHHHHHHH--HHHHHHHHhCCCCCEEEEEECccCcc
Confidence 99999999999999998 89999887778899999999999864
No 105
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.92 E-value=9.3e-25 Score=156.72 Aligned_cols=122 Identities=30% Similarity=0.453 Sum_probs=105.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEEEEeC
Q 044772 24 KCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSL 103 (159)
Q Consensus 24 ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~ 103 (159)
||+++|++|||||||+++|+.+.+...+.++....+...+.+.+..+.+++||++|+..+..++..++.+++++|+|||+
T Consensus 1 kv~vvG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vilv~d~ 80 (198)
T cd04147 1 RLVFMGAAGVGKTALIQRFLYDTFEPKYRRTVEEMHRKEYEVGGVSLTLDILDTSGSYSFPAMRKLSIQNSDAFALVYAV 80 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCCCchhhheeEEEEECCEEEEEEEEECCCchhhhHHHHHHhhcCCEEEEEEEC
Confidence 68999999999999999999999988888887655555667778778999999999999988888999999999999999
Q ss_pred CChhhHHhhhhhhHHHHHhhhC--CCCCEEEEeeCccccc-Cccccc
Q 044772 104 ISRPSYENISKKKWVPELRHYA--PSVPIVLVGTKLDLRK-DRQFHL 147 (159)
Q Consensus 104 ~~~~s~~~~~~~~~~~~i~~~~--~~~piilv~nK~Dl~~-~r~v~~ 147 (159)
+++.+|..+. .|+..+.... .++|++||+||+|+.. .+.+..
T Consensus 81 ~~~~s~~~~~--~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~~v~~ 125 (198)
T cd04147 81 DDPESFEEVE--RLREEILEVKEDKFVPIVVVGNKADSLEEERQVPA 125 (198)
T ss_pred CCHHHHHHHH--HHHHHHHHhcCCCCCcEEEEEEccccccccccccH
Confidence 9999999998 8888887765 3799999999999965 455543
No 106
>KOG0083 consensus GTPase Rab26/Rab37, small G protein superfamily [General function prediction only]
Probab=99.92 E-value=3.1e-27 Score=155.39 Aligned_cols=129 Identities=32% Similarity=0.634 Sum_probs=115.3
Q ss_pred EEEcCCCCCHHHHHHHHhcCCCC-CCcccceeeeeEE-EEEECCeEEEEEEEeCCCcccccccccccccCCcEEEEEEeC
Q 044772 26 VTVRDGAVGKTCLLISYTGNTFP-TDYVPTVFDNFSA-NVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSL 103 (159)
Q Consensus 26 ~vvG~~~~GKSsli~~l~~~~~~-~~~~~t~~~~~~~-~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~ 103 (159)
+++|++++|||+|+-|+..+.|. .+...|.+..|.. .+..++..+++++||+.||++|++....|++++|+++++||+
T Consensus 1 mllgds~~gktcllir~kdgafl~~~fistvgid~rnkli~~~~~kvklqiwdtagqerfrsvt~ayyrda~allllydi 80 (192)
T KOG0083|consen 1 MLLGDSCTGKTCLLIRFKDGAFLAGNFISTVGIDFRNKLIDMDDKKVKLQIWDTAGQERFRSVTHAYYRDADALLLLYDI 80 (192)
T ss_pred CccccCccCceEEEEEeccCceecCceeeeeeeccccceeccCCcEEEEEEeeccchHHHhhhhHhhhcccceeeeeeec
Confidence 47899999999999998877775 4456677877755 567789999999999999999999999999999999999999
Q ss_pred CChhhHHhhhhhhHHHHHhhhC-CCCCEEEEeeCcccccCccccccCCCccccc
Q 044772 104 ISRPSYENISKKKWVPELRHYA-PSVPIVLVGTKLDLRKDRQFHLDYPGAYTIS 156 (159)
Q Consensus 104 ~~~~s~~~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~r~v~~~~~~~~~~~ 156 (159)
.+.-+|++.+ .|+.+|+++. +.+.+.++|||||+.-+|.|..++++..|..
T Consensus 81 ankasfdn~~--~wlsei~ey~k~~v~l~llgnk~d~a~er~v~~ddg~kla~~ 132 (192)
T KOG0083|consen 81 ANKASFDNCQ--AWLSEIHEYAKEAVALMLLGNKCDLAHERAVKRDDGEKLAEA 132 (192)
T ss_pred ccchhHHHHH--HHHHHHHHHHHhhHhHhhhccccccchhhccccchHHHHHHH
Confidence 9999999999 9999999997 5788999999999999999999999886644
No 107
>PLN00223 ADP-ribosylation factor; Provisional
Probab=99.92 E-value=5.7e-25 Score=155.87 Aligned_cols=117 Identities=18% Similarity=0.251 Sum_probs=95.7
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEE
Q 044772 20 TKFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL 99 (159)
Q Consensus 20 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~ 99 (159)
.+.+||+++|++|||||||++++..+.+. .+.||.+..+. .+.. ..+.+++||++|++.+..+|..++++++++|+
T Consensus 15 ~~~~ki~ivG~~~~GKTsl~~~l~~~~~~-~~~pt~g~~~~-~~~~--~~~~~~i~D~~Gq~~~~~~~~~~~~~a~~iI~ 90 (181)
T PLN00223 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE-TVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIF 90 (181)
T ss_pred CCccEEEEECCCCCCHHHHHHHHccCCCc-cccCCcceeEE-EEEE--CCEEEEEEECCCCHHHHHHHHHHhccCCEEEE
Confidence 34589999999999999999999988775 46777765543 2333 34779999999999999999999999999999
Q ss_pred EEeCCChhhHHhhhhhhHHHHHhh--hCCCCCEEEEeeCcccccC
Q 044772 100 AFSLISRPSYENISKKKWVPELRH--YAPSVPIVLVGTKLDLRKD 142 (159)
Q Consensus 100 v~d~~~~~s~~~~~~~~~~~~i~~--~~~~~piilv~nK~Dl~~~ 142 (159)
|||++++++|..+. .++..+.. ..+++|++||+||+|+++.
T Consensus 91 V~D~s~~~s~~~~~--~~l~~~l~~~~~~~~piilv~NK~Dl~~~ 133 (181)
T PLN00223 91 VVDSNDRDRVVEAR--DELHRMLNEDELRDAVLLVFANKQDLPNA 133 (181)
T ss_pred EEeCCcHHHHHHHH--HHHHHHhcCHhhCCCCEEEEEECCCCCCC
Confidence 99999999998877 55555532 2257999999999999754
No 108
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=99.92 E-value=5.3e-25 Score=155.34 Aligned_cols=124 Identities=33% Similarity=0.504 Sum_probs=106.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEEEEe
Q 044772 23 IKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFS 102 (159)
Q Consensus 23 ~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d 102 (159)
.||+++|++|+|||||++++....+...+.++....+......++..+.+.+||++|++.+...+..++..+++++++||
T Consensus 2 ~kv~l~G~~g~GKTtl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d 81 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTVQFVEGHFVESYYPTIENTFSKIIRYKGQDYHLEIVDTAGQDEYSILPQKYSIGIHGYILVYS 81 (180)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCccccCcchhhhEEEEEEECCEEEEEEEEECCChHhhHHHHHHHHhhCCEEEEEEE
Confidence 68999999999999999999999888878888877666667778778889999999999998888899999999999999
Q ss_pred CCChhhHHhhhhhhHHHHHhhhC--CCCCEEEEeeCcccccCcccccc
Q 044772 103 LISRPSYENISKKKWVPELRHYA--PSVPIVLVGTKLDLRKDRQFHLD 148 (159)
Q Consensus 103 ~~~~~s~~~~~~~~~~~~i~~~~--~~~piilv~nK~Dl~~~r~v~~~ 148 (159)
+++..+|+.+. .|+..+.... .+.|+++|+||+|+...+.+..+
T Consensus 82 ~~~~~~~~~~~--~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~ 127 (180)
T cd04137 82 VTSRKSFEVVK--VIYDKILDMLGKESVPIVLVGNKSDLHTQRQVSTE 127 (180)
T ss_pred CCCHHHHHHHH--HHHHHHHHhcCCCCCCEEEEEEchhhhhcCccCHH
Confidence 99999999998 6666666543 47899999999999866655543
No 109
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=99.92 E-value=1.2e-24 Score=152.27 Aligned_cols=114 Identities=19% Similarity=0.294 Sum_probs=96.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEEEEeC
Q 044772 24 KCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSL 103 (159)
Q Consensus 24 ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~ 103 (159)
+|+++|++|||||||+++|.++ +...+.+|.+... ..+..+ .+.+++||++|++.+..++..++++++++|+|||+
T Consensus 1 ~i~~~G~~~~GKTsl~~~l~~~-~~~~~~~t~g~~~-~~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~a~~ii~V~D~ 76 (167)
T cd04161 1 TLLTVGLDNAGKTTLVSALQGE-IPKKVAPTVGFTP-TKLRLD--KYEVCIFDLGGGANFRGIWVNYYAEAHGLVFVVDS 76 (167)
T ss_pred CEEEECCCCCCHHHHHHHHhCC-CCccccCcccceE-EEEEEC--CEEEEEEECCCcHHHHHHHHHHHcCCCEEEEEEEC
Confidence 4899999999999999999976 6677788877543 234443 46799999999999999999999999999999999
Q ss_pred CChhhHHhhhhhhHHHHHhhhC--CCCCEEEEeeCcccccCc
Q 044772 104 ISRPSYENISKKKWVPELRHYA--PSVPIVLVGTKLDLRKDR 143 (159)
Q Consensus 104 ~~~~s~~~~~~~~~~~~i~~~~--~~~piilv~nK~Dl~~~r 143 (159)
+++.+|..+. .|+..+.... .++|++||+||+|+++.+
T Consensus 77 s~~~s~~~~~--~~l~~l~~~~~~~~~piliv~NK~Dl~~~~ 116 (167)
T cd04161 77 SDDDRVQEVK--EILRELLQHPRVSGKPILVLANKQDKKNAL 116 (167)
T ss_pred CchhHHHHHH--HHHHHHHcCccccCCcEEEEEeCCCCcCCC
Confidence 9999999888 8888776543 479999999999998766
No 110
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=99.92 E-value=6.7e-25 Score=152.37 Aligned_cols=113 Identities=18% Similarity=0.272 Sum_probs=93.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEEEEe
Q 044772 23 IKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFS 102 (159)
Q Consensus 23 ~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d 102 (159)
+||+++|.+|||||||++++..+.+. .+.||.+..+. .+.. ..+.+.+||++|++.+...+..++++++++|+|||
T Consensus 1 ~kv~~~G~~~~GKTsli~~l~~~~~~-~~~pt~g~~~~-~~~~--~~~~~~l~D~~G~~~~~~~~~~~~~~ad~~i~v~D 76 (159)
T cd04150 1 MRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE-TVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVD 76 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCc-ccCCCCCcceE-EEEE--CCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEe
Confidence 48999999999999999999888876 46777765443 2333 35779999999999999999999999999999999
Q ss_pred CCChhhHHhhhhhhHHHHHhhh--CCCCCEEEEeeCccccc
Q 044772 103 LISRPSYENISKKKWVPELRHY--APSVPIVLVGTKLDLRK 141 (159)
Q Consensus 103 ~~~~~s~~~~~~~~~~~~i~~~--~~~~piilv~nK~Dl~~ 141 (159)
++++.+|..+. .|+..+... ..+.|++|++||+|+.+
T Consensus 77 ~~~~~s~~~~~--~~~~~~~~~~~~~~~piilv~NK~Dl~~ 115 (159)
T cd04150 77 SNDRERIGEAR--EELQRMLNEDELRDAVLLVFANKQDLPN 115 (159)
T ss_pred CCCHHHHHHHH--HHHHHHHhcHHhcCCCEEEEEECCCCCC
Confidence 99999999887 655555432 24789999999999964
No 111
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=99.92 E-value=1.6e-24 Score=143.26 Aligned_cols=115 Identities=34% Similarity=0.561 Sum_probs=90.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCC--CCcccceeeeeE-EEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEEE
Q 044772 24 KCVTVRDGAVGKTCLLISYTGNTFP--TDYVPTVFDNFS-ANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADVFILA 100 (159)
Q Consensus 24 ki~vvG~~~~GKSsli~~l~~~~~~--~~~~~t~~~~~~-~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v 100 (159)
||+|+|++|||||||+++|++..+. ..+.+..+..+. ...........+.+||++|++.+...+..++..++++++|
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~ilv 80 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGEFPDNSVPEETSEITIGVDVIVVDGDRQSLQFWDFGGQEEFYSQHQFFLKKADAVILV 80 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS--------SSTTSCEEEEEEEETTEEEEEEEEEESSSHCHHCTSHHHHHHSCEEEEE
T ss_pred CEEEECcCCCCHHHHHHHHhcCCCcccccccccCCCcEEEEEEEecCCceEEEEEecCccceecccccchhhcCcEEEEE
Confidence 7999999999999999999988876 122333333333 2445566666699999999998888888889999999999
Q ss_pred EeCCChhhHHhhhh-hhHHHHHhhhCCCCCEEEEeeCcc
Q 044772 101 FSLISRPSYENISK-KKWVPELRHYAPSVPIVLVGTKLD 138 (159)
Q Consensus 101 ~d~~~~~s~~~~~~-~~~~~~i~~~~~~~piilv~nK~D 138 (159)
||++++++|+.+.. ..|+..+.....++|++|||||.|
T Consensus 81 ~D~s~~~s~~~~~~~~~~l~~~~~~~~~~piilv~nK~D 119 (119)
T PF08477_consen 81 YDLSDPESLEYLSQLLKWLKNIRKRDKNIPIILVGNKSD 119 (119)
T ss_dssp EECCGHHHHHHHHHHHHHHHHHHHHSSCSEEEEEEE-TC
T ss_pred EcCCChHHHHHHHHHHHHHHHHHccCCCCCEEEEEeccC
Confidence 99999999998753 257888887777899999999998
No 112
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=99.92 E-value=8e-25 Score=153.30 Aligned_cols=112 Identities=18% Similarity=0.291 Sum_probs=93.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEEEEeC
Q 044772 24 KCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSL 103 (159)
Q Consensus 24 ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~ 103 (159)
||+++|++|||||||+++|.++.+.. +.+|.+..+. .+.. ..+.+.+||++|++.+...+..++.+++++++|||+
T Consensus 1 ~vvlvG~~~~GKTsl~~~l~~~~~~~-~~~T~~~~~~-~~~~--~~~~i~l~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~ 76 (169)
T cd04158 1 RVVTLGLDGAGKTTILFKLKQDEFMQ-PIPTIGFNVE-TVEY--KNLKFTIWDVGGKHKLRPLWKHYYLNTQAVVFVVDS 76 (169)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCCCC-cCCcCceeEE-EEEE--CCEEEEEEECCCChhcchHHHHHhccCCEEEEEEeC
Confidence 68999999999999999999887654 6777665443 2333 346799999999999998999999999999999999
Q ss_pred CChhhHHhhhhhhHHHHHhhhC--CCCCEEEEeeCccccc
Q 044772 104 ISRPSYENISKKKWVPELRHYA--PSVPIVLVGTKLDLRK 141 (159)
Q Consensus 104 ~~~~s~~~~~~~~~~~~i~~~~--~~~piilv~nK~Dl~~ 141 (159)
+++++|.++. .|+..+.... .+.|++||+||+|+.+
T Consensus 77 s~~~s~~~~~--~~~~~~~~~~~~~~~piilv~NK~Dl~~ 114 (169)
T cd04158 77 SHRDRVSEAH--SELAKLLTEKELRDALLLIFANKQDVAG 114 (169)
T ss_pred CcHHHHHHHH--HHHHHHhcChhhCCCCEEEEEeCcCccc
Confidence 9999999987 7777776432 4689999999999964
No 113
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=99.92 E-value=1.8e-24 Score=153.45 Aligned_cols=116 Identities=20% Similarity=0.281 Sum_probs=94.6
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEE
Q 044772 20 TKFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL 99 (159)
Q Consensus 20 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~ 99 (159)
...+||+++|++|||||||++++..+.+.. +.||.+..+. .+.. ..+.+++||++|++.+..++..++++++++|+
T Consensus 15 ~~~~kv~lvG~~~vGKTsli~~~~~~~~~~-~~~T~~~~~~-~~~~--~~~~~~l~D~~G~~~~~~~~~~~~~~ad~iI~ 90 (182)
T PTZ00133 15 KKEVRILMVGLDAAGKTTILYKLKLGEVVT-TIPTIGFNVE-TVEY--KNLKFTMWDVGGQDKLRPLWRHYYQNTNGLIF 90 (182)
T ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCccccceE-EEEE--CCEEEEEEECCCCHhHHHHHHHHhcCCCEEEE
Confidence 345899999999999999999998887764 5677765543 2333 44779999999999999999999999999999
Q ss_pred EEeCCChhhHHhhhhhhHHHHHhhh--CCCCCEEEEeeCccccc
Q 044772 100 AFSLISRPSYENISKKKWVPELRHY--APSVPIVLVGTKLDLRK 141 (159)
Q Consensus 100 v~d~~~~~s~~~~~~~~~~~~i~~~--~~~~piilv~nK~Dl~~ 141 (159)
|||++++++|..+. .++..+... ..++|++||+||+|+.+
T Consensus 91 v~D~t~~~s~~~~~--~~l~~~~~~~~~~~~piilv~NK~Dl~~ 132 (182)
T PTZ00133 91 VVDSNDRERIGDAR--EELERMLSEDELRDAVLLVFANKQDLPN 132 (182)
T ss_pred EEeCCCHHHHHHHH--HHHHHHHhCHhhcCCCEEEEEeCCCCCC
Confidence 99999999999887 555544322 24789999999999965
No 114
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=99.91 E-value=4.3e-24 Score=147.84 Aligned_cols=114 Identities=21% Similarity=0.257 Sum_probs=93.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC-CCCCcccceeeeeEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEEEEe
Q 044772 24 KCVTVRDGAVGKTCLLISYTGNT-FPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFS 102 (159)
Q Consensus 24 ki~vvG~~~~GKSsli~~l~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d 102 (159)
+|+++|++|||||||+++|.+.. +...+.+|.+.... .. ....+.+.+||+||++.+..++..++++++++|+|||
T Consensus 1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~~~~t~g~~~~-~~--~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~D 77 (162)
T cd04157 1 NILVVGLDNSGKTTIINQLKPENAQSQIIVPTVGFNVE-SF--EKGNLSFTAFDMSGQGKYRGLWEHYYKNIQGIIFVID 77 (162)
T ss_pred CEEEECCCCCCHHHHHHHHcccCCCcceecCccccceE-EE--EECCEEEEEEECCCCHhhHHHHHHHHccCCEEEEEEe
Confidence 58999999999999999999876 35567777764332 12 2335679999999999999999999999999999999
Q ss_pred CCChhhHHhhhhhhHHHHHhhh----CCCCCEEEEeeCcccccC
Q 044772 103 LISRPSYENISKKKWVPELRHY----APSVPIVLVGTKLDLRKD 142 (159)
Q Consensus 103 ~~~~~s~~~~~~~~~~~~i~~~----~~~~piilv~nK~Dl~~~ 142 (159)
++++.+|..+. .|+..+... ..++|+++|+||+|+.+.
T Consensus 78 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~ 119 (162)
T cd04157 78 SSDRLRLVVVK--DELELLLNHPDIKHRRVPILFFANKMDLPDA 119 (162)
T ss_pred CCcHHHHHHHH--HHHHHHHcCcccccCCCCEEEEEeCccccCC
Confidence 99999998877 777766543 147999999999999754
No 115
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=99.91 E-value=1.2e-23 Score=147.81 Aligned_cols=118 Identities=17% Similarity=0.275 Sum_probs=95.2
Q ss_pred cceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEE
Q 044772 19 ATKFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADVFI 98 (159)
Q Consensus 19 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i 98 (159)
....+||+++|++|||||||+++|.+..+ ..+.+|.+... ..+..+ .+.+.+||++|++.+..++..++.++++++
T Consensus 11 ~~~~~kv~ivG~~~~GKTsL~~~l~~~~~-~~~~~t~g~~~-~~~~~~--~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i 86 (173)
T cd04154 11 KEREMRILILGLDNAGKTTILKKLLGEDI-DTISPTLGFQI-KTLEYE--GYKLNIWDVGGQKTLRPYWRNYFESTDALI 86 (173)
T ss_pred CCCccEEEEECCCCCCHHHHHHHHccCCC-CCcCCccccce-EEEEEC--CEEEEEEECCCCHHHHHHHHHHhCCCCEEE
Confidence 34568999999999999999999997754 45566665332 233444 367999999999998888899999999999
Q ss_pred EEEeCCChhhHHhhhhhhHHHHHhhh--CCCCCEEEEeeCcccccC
Q 044772 99 LAFSLISRPSYENISKKKWVPELRHY--APSVPIVLVGTKLDLRKD 142 (159)
Q Consensus 99 ~v~d~~~~~s~~~~~~~~~~~~i~~~--~~~~piilv~nK~Dl~~~ 142 (159)
+|||++++.+|.... .|+..+... ..+.|++||+||+|+.+.
T Consensus 87 ~v~d~~~~~s~~~~~--~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~ 130 (173)
T cd04154 87 WVVDSSDRLRLDDCK--RELKELLQEERLAGATLLILANKQDLPGA 130 (173)
T ss_pred EEEECCCHHHHHHHH--HHHHHHHhChhhcCCCEEEEEECcccccC
Confidence 999999999998887 676666432 258999999999999754
No 116
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=99.91 E-value=1.4e-23 Score=148.89 Aligned_cols=118 Identities=22% Similarity=0.343 Sum_probs=96.6
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeee-EEEEEE-CCeEEEEEEEeCCCcccccccccccccCCcEEE
Q 044772 21 KFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNF-SANVMV-DGRTVNLGLWDTAGQEDYNRLRPLSYRGADVFI 98 (159)
Q Consensus 21 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~-~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i 98 (159)
+.+||+++|++|||||||++++..+.+... .+|.+... ...+.. ++..+.+.+||++|++.+..++..+++++++++
T Consensus 2 ~~~kv~~vG~~~~GKTsli~~~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii 80 (183)
T cd04152 2 QSLHIVMLGLDSAGKTTVLYRLKFNEFVNT-VPTKGFNTEKIKVSLGNSKGITFHFWDVGGQEKLRPLWKSYTRCTDGIV 80 (183)
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCcCCc-CCccccceeEEEeeccCCCceEEEEEECCCcHhHHHHHHHHhccCCEEE
Confidence 358999999999999999999998887654 56655443 223333 345688999999999999999999999999999
Q ss_pred EEEeCCChhhHHhhhhhhHHHHHhhhC--CCCCEEEEeeCccccc
Q 044772 99 LAFSLISRPSYENISKKKWVPELRHYA--PSVPIVLVGTKLDLRK 141 (159)
Q Consensus 99 ~v~d~~~~~s~~~~~~~~~~~~i~~~~--~~~piilv~nK~Dl~~ 141 (159)
+|||++++.++..+. .|+..+.... .+.|++||+||+|+.+
T Consensus 81 ~v~D~~~~~~~~~~~--~~~~~i~~~~~~~~~p~iiv~NK~D~~~ 123 (183)
T cd04152 81 FVVDSVDVERMEEAK--TELHKITRFSENQGVPVLVLANKQDLPN 123 (183)
T ss_pred EEEECCCHHHHHHHH--HHHHHHHhhhhcCCCcEEEEEECcCccc
Confidence 999999999998887 7777766543 4799999999999864
No 117
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=99.90 E-value=3e-23 Score=150.59 Aligned_cols=124 Identities=41% Similarity=0.696 Sum_probs=107.9
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeeeEE-EEEECCeEEEEEEEeCCCcccccccccccccCCcEEEEE
Q 044772 22 FIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSA-NVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADVFILA 100 (159)
Q Consensus 22 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~-~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v 100 (159)
.+||+++|++|||||||+++|..+.+...+.++.+..+.. ........+++.+||++|++.+..++..|+.+++++++|
T Consensus 5 ~~kivv~G~~g~GKTtl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~gq~~~~~~~~~y~~~~~~~l~~ 84 (219)
T COG1100 5 EFKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWDTAGQEEYRSLRPEYYRGANGILIV 84 (219)
T ss_pred eEEEEEEcCCCccHHHHHHHHhcCcCcccCCCceeeeeEEEEEEeCCCEEEEEeecCCCHHHHHHHHHHHhcCCCEEEEE
Confidence 3899999999999999999999999999999998877754 334444478899999999999999999999999999999
Q ss_pred EeCCChhhHHhhhhhhHHHHHhhhC-CCCCEEEEeeCcccccCcccc
Q 044772 101 FSLISRPSYENISKKKWVPELRHYA-PSVPIVLVGTKLDLRKDRQFH 146 (159)
Q Consensus 101 ~d~~~~~s~~~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~r~v~ 146 (159)
||..+..++.++.. .|.+.+.... .+.|+++++||+|+...+...
T Consensus 85 ~d~~~~~~~~~~~~-~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~~~ 130 (219)
T COG1100 85 YDSTLRESSDELTE-EWLEELRELAPDDVPILLVGNKIDLFDEQSSS 130 (219)
T ss_pred EecccchhhhHHHH-HHHHHHHHhCCCCceEEEEecccccccchhHH
Confidence 99999667766666 9999998888 479999999999998875433
No 118
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=99.90 E-value=6e-23 Score=142.02 Aligned_cols=113 Identities=21% Similarity=0.317 Sum_probs=91.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEEEEeC
Q 044772 24 KCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSL 103 (159)
Q Consensus 24 ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~ 103 (159)
+|+++|++|||||||+++|.++.+.. +.+|.+..+. .+.. +..+.+.+||++|++.+...+..++.+++++|+|||+
T Consensus 1 ~i~i~G~~~~GKTsl~~~~~~~~~~~-~~~t~~~~~~-~~~~-~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~iv~v~D~ 77 (160)
T cd04156 1 QVLLLGLDSAGKSTLLYKLKHAELVT-TIPTVGFNVE-MLQL-EKHLSLTVWDVGGQEKMRTVWKCYLENTDGLVYVVDS 77 (160)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCccc-ccCccCcceE-EEEe-CCceEEEEEECCCCHhHHHHHHHHhccCCEEEEEEEC
Confidence 58999999999999999999988764 3566654432 2333 3447899999999999988888999999999999999
Q ss_pred CChhhHHhhhhhhHHHHHhhhC--CCCCEEEEeeCccccc
Q 044772 104 ISRPSYENISKKKWVPELRHYA--PSVPIVLVGTKLDLRK 141 (159)
Q Consensus 104 ~~~~s~~~~~~~~~~~~i~~~~--~~~piilv~nK~Dl~~ 141 (159)
+++.++..+. .|+..+.... .+.|+++|+||+|+..
T Consensus 78 ~~~~~~~~~~--~~~~~~~~~~~~~~~piilv~nK~Dl~~ 115 (160)
T cd04156 78 SDEARLDESQ--KELKHILKNEHIKGVPVVLLANKQDLPG 115 (160)
T ss_pred CcHHHHHHHH--HHHHHHHhchhhcCCCEEEEEECccccc
Confidence 9999998887 6666655432 5899999999999964
No 119
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=99.90 E-value=4.9e-23 Score=144.92 Aligned_cols=115 Identities=20% Similarity=0.279 Sum_probs=93.7
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEEE
Q 044772 21 KFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADVFILA 100 (159)
Q Consensus 21 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v 100 (159)
..+||+++|++|+|||||++++..+.+.. +.++.+..+. ....+ .+.+.+||++|++.+...+..++.+++++++|
T Consensus 14 ~~~kv~~~G~~~~GKTsl~~~l~~~~~~~-~~~t~~~~~~-~~~~~--~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~V 89 (174)
T cd04153 14 KEYKVIIVGLDNAGKTTILYQFLLGEVVH-TSPTIGSNVE-EIVYK--NIRFLMWDIGGQESLRSSWNTYYTNTDAVILV 89 (174)
T ss_pred CccEEEEECCCCCCHHHHHHHHccCCCCC-cCCccccceE-EEEEC--CeEEEEEECCCCHHHHHHHHHHhhcCCEEEEE
Confidence 35899999999999999999999888764 4666665543 23333 46799999999999999999999999999999
Q ss_pred EeCCChhhHHhhhhhhHHHHHhhhC--CCCCEEEEeeCccccc
Q 044772 101 FSLISRPSYENISKKKWVPELRHYA--PSVPIVLVGTKLDLRK 141 (159)
Q Consensus 101 ~d~~~~~s~~~~~~~~~~~~i~~~~--~~~piilv~nK~Dl~~ 141 (159)
||++++++|.... .++..+.... .++|+++++||+|+.+
T Consensus 90 ~D~s~~~~~~~~~--~~l~~~~~~~~~~~~p~viv~NK~Dl~~ 130 (174)
T cd04153 90 IDSTDRERLPLTK--EELYKMLAHEDLRKAVLLVLANKQDLKG 130 (174)
T ss_pred EECCCHHHHHHHH--HHHHHHHhchhhcCCCEEEEEECCCCCC
Confidence 9999999998877 5555554332 5799999999999865
No 120
>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=99.90 E-value=2.5e-25 Score=153.03 Aligned_cols=135 Identities=33% Similarity=0.512 Sum_probs=122.4
Q ss_pred CCcceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeeeE-EEEEECCeEEEEEEEeCCCcccccccccccccCCc
Q 044772 17 TTATKFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFS-ANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGAD 95 (159)
Q Consensus 17 ~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~ 95 (159)
..-...+|++++|..+|||||++++++.+-|...|..+++..+. ..+.+++..+.+.+||++|++.|....+.|++++.
T Consensus 15 ~d~e~aiK~vivGng~VGKssmiqryCkgifTkdykktIgvdflerqi~v~~Edvr~mlWdtagqeEfDaItkAyyrgaq 94 (246)
T KOG4252|consen 15 TDYERAIKFVIVGNGSVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIKVLIEDVRSMLWDTAGQEEFDAITKAYYRGAQ 94 (246)
T ss_pred hhhhhhEEEEEECCCccchHHHHHHHhccccccccccccchhhhhHHHHhhHHHHHHHHHHhccchhHHHHHHHHhcccc
Confidence 34567899999999999999999999999999999999988774 35566666677889999999999999999999999
Q ss_pred EEEEEEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCcccccCccccccCCCcc
Q 044772 96 VFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKDRQFHLDYPGAY 153 (159)
Q Consensus 96 ~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~r~v~~~~~~~~ 153 (159)
+.++||+.+|+.+|+... .|.+.+..-.+.+|.++|-||+||.++.++..++.+..
T Consensus 95 a~vLVFSTTDr~SFea~~--~w~~kv~~e~~~IPtV~vqNKIDlveds~~~~~evE~l 150 (246)
T KOG4252|consen 95 ASVLVFSTTDRYSFEATL--EWYNKVQKETERIPTVFVQNKIDLVEDSQMDKGEVEGL 150 (246)
T ss_pred ceEEEEecccHHHHHHHH--HHHHHHHHHhccCCeEEeeccchhhHhhhcchHHHHHH
Confidence 999999999999999999 99999999889999999999999999999998877654
No 121
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=99.89 E-value=7.1e-23 Score=141.71 Aligned_cols=114 Identities=17% Similarity=0.243 Sum_probs=89.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEEEEeC
Q 044772 24 KCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSL 103 (159)
Q Consensus 24 ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~ 103 (159)
||+++|++++|||||++++..+.+. .+.+|.+..+. .+.. ..+.+++||++|++.+..++..++..++++|+|||+
T Consensus 1 kv~lvG~~~~GKTsl~~~l~~~~~~-~~~~t~~~~~~-~~~~--~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii~v~d~ 76 (158)
T cd04151 1 RILILGLDNAGKTTILYRLQLGEVV-TTIPTIGFNVE-TVTY--KNLKFQVWDLGGQTSIRPYWRCYYSNTDAIIYVVDS 76 (158)
T ss_pred CEEEECCCCCCHHHHHHHHccCCCc-CcCCccCcCeE-EEEE--CCEEEEEEECCCCHHHHHHHHHHhcCCCEEEEEEEC
Confidence 6899999999999999999877765 34566654432 2233 346799999999999999999999999999999999
Q ss_pred CChhhHHhhhhhhHHHHHhhh-CCCCCEEEEeeCcccccC
Q 044772 104 ISRPSYENISKKKWVPELRHY-APSVPIVLVGTKLDLRKD 142 (159)
Q Consensus 104 ~~~~s~~~~~~~~~~~~i~~~-~~~~piilv~nK~Dl~~~ 142 (159)
+++.++..... .|...+... ..+.|+++|+||+|+.+.
T Consensus 77 ~~~~~~~~~~~-~~~~~~~~~~~~~~piiiv~nK~Dl~~~ 115 (158)
T cd04151 77 TDRDRLGTAKE-ELHAMLEEEELKGAVLLVFANKQDMPGA 115 (158)
T ss_pred CCHHHHHHHHH-HHHHHHhchhhcCCcEEEEEeCCCCCCC
Confidence 99988877663 344333322 247999999999999753
No 122
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=99.89 E-value=9.1e-23 Score=143.88 Aligned_cols=118 Identities=25% Similarity=0.368 Sum_probs=95.0
Q ss_pred cceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEE
Q 044772 19 ATKFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADVFI 98 (159)
Q Consensus 19 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i 98 (159)
..+.+||+++|+.|+|||||++++..+.+. ...||.+.... .+..++ +.+.+||++|+..+...|+.|+.+++++|
T Consensus 11 ~~~~~~ililGl~~sGKTtll~~l~~~~~~-~~~pT~g~~~~-~i~~~~--~~~~~~d~gG~~~~~~~w~~y~~~~~~iI 86 (175)
T PF00025_consen 11 KKKEIKILILGLDGSGKTTLLNRLKNGEIS-ETIPTIGFNIE-EIKYKG--YSLTIWDLGGQESFRPLWKSYFQNADGII 86 (175)
T ss_dssp TTSEEEEEEEESTTSSHHHHHHHHHSSSEE-EEEEESSEEEE-EEEETT--EEEEEEEESSSGGGGGGGGGGHTTESEEE
T ss_pred cCcEEEEEEECCCccchHHHHHHhhhcccc-ccCcccccccc-eeeeCc--EEEEEEeccccccccccceeeccccceeE
Confidence 468899999999999999999999976653 35666654432 334444 56899999999999999999999999999
Q ss_pred EEEeCCChhhHHhhhhhhHHHHHhhh--CCCCCEEEEeeCcccccC
Q 044772 99 LAFSLISRPSYENISKKKWVPELRHY--APSVPIVLVGTKLDLRKD 142 (159)
Q Consensus 99 ~v~d~~~~~s~~~~~~~~~~~~i~~~--~~~~piilv~nK~Dl~~~ 142 (159)
||+|.++++.+.+.. ..+..+... ..+.|++|++||+|+++.
T Consensus 87 fVvDssd~~~l~e~~--~~L~~ll~~~~~~~~piLIl~NK~D~~~~ 130 (175)
T PF00025_consen 87 FVVDSSDPERLQEAK--EELKELLNDPELKDIPILILANKQDLPDA 130 (175)
T ss_dssp EEEETTGGGGHHHHH--HHHHHHHTSGGGTTSEEEEEEESTTSTTS
T ss_pred EEEecccceeecccc--cchhhhcchhhcccceEEEEeccccccCc
Confidence 999999999998887 444444432 258999999999998753
No 123
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=99.89 E-value=1.5e-22 Score=143.75 Aligned_cols=116 Identities=16% Similarity=0.267 Sum_probs=92.8
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEE
Q 044772 20 TKFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL 99 (159)
Q Consensus 20 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~ 99 (159)
.+.++|+++|++|||||||++++.++.+. .+.+|.+... ..+..+ .+++.+||++|++.+...+..++.+++++++
T Consensus 15 ~~~~~i~ivG~~~~GKTsli~~l~~~~~~-~~~~t~~~~~-~~~~~~--~~~~~~~D~~G~~~~~~~~~~~~~~ad~ii~ 90 (184)
T smart00178 15 NKHAKILFLGLDNAGKTTLLHMLKNDRLA-QHQPTQHPTS-EELAIG--NIKFTTFDLGGHQQARRLWKDYFPEVNGIVY 90 (184)
T ss_pred cccCEEEEECCCCCCHHHHHHHHhcCCCc-ccCCccccce-EEEEEC--CEEEEEEECCCCHHHHHHHHHHhCCCCEEEE
Confidence 56699999999999999999999988764 3445544322 223333 3678999999999998899999999999999
Q ss_pred EEeCCChhhHHhhhhhhHHHHHhhh--CCCCCEEEEeeCccccc
Q 044772 100 AFSLISRPSYENISKKKWVPELRHY--APSVPIVLVGTKLDLRK 141 (159)
Q Consensus 100 v~d~~~~~s~~~~~~~~~~~~i~~~--~~~~piilv~nK~Dl~~ 141 (159)
|+|++++.++.... .++..+... ..+.|+++|+||+|++.
T Consensus 91 vvD~~~~~~~~~~~--~~l~~l~~~~~~~~~piliv~NK~Dl~~ 132 (184)
T smart00178 91 LVDAYDKERFAESK--RELDALLSDEELATVPFLILGNKIDAPY 132 (184)
T ss_pred EEECCcHHHHHHHH--HHHHHHHcChhhcCCCEEEEEeCccccC
Confidence 99999999998887 566655543 25789999999999864
No 124
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=99.89 E-value=1.7e-22 Score=139.62 Aligned_cols=114 Identities=21% Similarity=0.307 Sum_probs=92.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEEEEeC
Q 044772 24 KCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSL 103 (159)
Q Consensus 24 ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~ 103 (159)
||+++|.+|||||||++++.++.+ ..+.++.+.... .+.++ .+.+.+||+||++.+...+..++.+++++++|||+
T Consensus 1 ki~iiG~~~~GKssli~~~~~~~~-~~~~~t~~~~~~-~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~D~ 76 (158)
T cd00878 1 RILILGLDGAGKTTILYKLKLGEV-VTTIPTIGFNVE-TVEYK--NVSFTVWDVGGQDKIRPLWKHYYENTNGIIFVVDS 76 (158)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCC-CCCCCCcCcceE-EEEEC--CEEEEEEECCCChhhHHHHHHHhccCCEEEEEEEC
Confidence 689999999999999999998874 344555554332 23333 46799999999999988999999999999999999
Q ss_pred CChhhHHhhhhhhHHHHHhhhC--CCCCEEEEeeCcccccCc
Q 044772 104 ISRPSYENISKKKWVPELRHYA--PSVPIVLVGTKLDLRKDR 143 (159)
Q Consensus 104 ~~~~s~~~~~~~~~~~~i~~~~--~~~piilv~nK~Dl~~~r 143 (159)
+++.++..+. .|+..+.... .+.|+++|+||+|+...+
T Consensus 77 ~~~~~~~~~~--~~~~~~~~~~~~~~~piiiv~nK~D~~~~~ 116 (158)
T cd00878 77 SDRERIEEAK--EELHKLLNEEELKGVPLLIFANKQDLPGAL 116 (158)
T ss_pred CCHHHHHHHH--HHHHHHHhCcccCCCcEEEEeeccCCcccc
Confidence 9999999887 6776665543 589999999999997644
No 125
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=99.89 E-value=3.1e-22 Score=137.32 Aligned_cols=115 Identities=25% Similarity=0.383 Sum_probs=95.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEEEEeC
Q 044772 24 KCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSL 103 (159)
Q Consensus 24 ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~ 103 (159)
.|+++|++|||||||+++|.+.++...+.++.+..+.. +..++ +.+.+||++|++.+...+..++.+++++++|+|+
T Consensus 1 ~i~i~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~-~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~ 77 (159)
T cd04159 1 EITLVGLQNSGKTTLVNVIAGGQFSEDTIPTVGFNMRK-VTKGN--VTLKVWDLGGQPRFRSMWERYCRGVNAIVYVVDA 77 (159)
T ss_pred CEEEEcCCCCCHHHHHHHHccCCCCcCccCCCCcceEE-EEECC--EEEEEEECCCCHhHHHHHHHHHhcCCEEEEEEEC
Confidence 37999999999999999999999988888887765542 33333 6799999999999999999999999999999999
Q ss_pred CChhhHHhhhhhhHHHHHhhhC--CCCCEEEEeeCcccccCc
Q 044772 104 ISRPSYENISKKKWVPELRHYA--PSVPIVLVGTKLDLRKDR 143 (159)
Q Consensus 104 ~~~~s~~~~~~~~~~~~i~~~~--~~~piilv~nK~Dl~~~r 143 (159)
+++.++.... .|+..+.... .++|+++|+||+|+....
T Consensus 78 ~~~~~~~~~~--~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~ 117 (159)
T cd04159 78 ADRTALEAAK--NELHDLLEKPSLEGIPLLVLGNKNDLPGAL 117 (159)
T ss_pred CCHHHHHHHH--HHHHHHHcChhhcCCCEEEEEeCccccCCc
Confidence 9998888776 5555554322 578999999999987654
No 126
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=99.88 E-value=7.2e-22 Score=140.52 Aligned_cols=116 Identities=20% Similarity=0.307 Sum_probs=93.9
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEE
Q 044772 20 TKFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL 99 (159)
Q Consensus 20 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~ 99 (159)
.+.+||+++|++|||||||++++.++.+. .+.+|.+... ..+.+++ ..+.+||++|++.+...+..+++.++++++
T Consensus 17 ~~~~ki~ilG~~~~GKStLi~~l~~~~~~-~~~~T~~~~~-~~i~~~~--~~~~l~D~~G~~~~~~~~~~~~~~ad~iil 92 (190)
T cd00879 17 NKEAKILFLGLDNAGKTTLLHMLKDDRLA-QHVPTLHPTS-EELTIGN--IKFKTFDLGGHEQARRLWKDYFPEVDGIVF 92 (190)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCCc-ccCCccCcce-EEEEECC--EEEEEEECCCCHHHHHHHHHHhccCCEEEE
Confidence 35789999999999999999999988764 4566665433 2344454 568999999999888888899999999999
Q ss_pred EEeCCChhhHHhhhhhhHHHHHhhhC--CCCCEEEEeeCccccc
Q 044772 100 AFSLISRPSYENISKKKWVPELRHYA--PSVPIVLVGTKLDLRK 141 (159)
Q Consensus 100 v~d~~~~~s~~~~~~~~~~~~i~~~~--~~~piilv~nK~Dl~~ 141 (159)
|+|+.++.+|.... .|+..+.... .+.|++|++||+|+.+
T Consensus 93 V~D~~~~~s~~~~~--~~~~~i~~~~~~~~~pvivv~NK~Dl~~ 134 (190)
T cd00879 93 LVDAADPERFQESK--EELDSLLSDEELANVPFLILGNKIDLPG 134 (190)
T ss_pred EEECCcHHHHHHHH--HHHHHHHcCccccCCCEEEEEeCCCCCC
Confidence 99999999998777 6666665433 4799999999999863
No 127
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=99.88 E-value=5.4e-22 Score=138.14 Aligned_cols=114 Identities=23% Similarity=0.338 Sum_probs=89.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCC------CCCcccceeeeeEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEE
Q 044772 24 KCVTVRDGAVGKTCLLISYTGNTF------PTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADVF 97 (159)
Q Consensus 24 ki~vvG~~~~GKSsli~~l~~~~~------~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ 97 (159)
+|+++|++|+|||||+++|..... ...+.+|.+..+. .+..+ ...+.+||++|++.+..++..++..++++
T Consensus 1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~~-~~~~~--~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~ 77 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNIG-TIEVG--NARLKFWDLGGQESLRSLWDKYYAECHAI 77 (167)
T ss_pred CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccceE-EEEEC--CEEEEEEECCCChhhHHHHHHHhCCCCEE
Confidence 589999999999999999976432 2234445544442 23344 46799999999999998889999999999
Q ss_pred EEEEeCCChhhHHhhhhhhHHHHHhhhC--CCCCEEEEeeCcccccC
Q 044772 98 ILAFSLISRPSYENISKKKWVPELRHYA--PSVPIVLVGTKLDLRKD 142 (159)
Q Consensus 98 i~v~d~~~~~s~~~~~~~~~~~~i~~~~--~~~piilv~nK~Dl~~~ 142 (159)
++|+|..+++++.... .|+..+.... .+.|++|++||+|+...
T Consensus 78 v~vvd~~~~~~~~~~~--~~~~~~~~~~~~~~~p~ilv~NK~D~~~~ 122 (167)
T cd04160 78 IYVIDSTDRERFEESK--SALEKVLRNEALEGVPLLILANKQDLPDA 122 (167)
T ss_pred EEEEECchHHHHHHHH--HHHHHHHhChhhcCCCEEEEEEccccccC
Confidence 9999999988888877 6776665542 47999999999998653
No 128
>KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.87 E-value=4.6e-22 Score=137.59 Aligned_cols=124 Identities=22% Similarity=0.279 Sum_probs=102.8
Q ss_pred CCCcceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCcccccccccccccCCc
Q 044772 16 TTTATKFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGAD 95 (159)
Q Consensus 16 ~~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~ 95 (159)
.....+..+|+++|..++||||++++|..+++... .||++.+.. .+.+. .+.+.+||.+|+++++..|++|+.+.+
T Consensus 11 ~~~~~~e~~IlmlGLD~AGKTTILykLk~~E~vtt-vPTiGfnVE-~v~yk--n~~f~vWDvGGq~k~R~lW~~Y~~~t~ 86 (181)
T KOG0070|consen 11 GLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-VPTIGFNVE-TVEYK--NISFTVWDVGGQEKLRPLWKHYFQNTQ 86 (181)
T ss_pred hccCcceEEEEEEeccCCCceeeeEeeccCCcccC-CCcccccee-EEEEc--ceEEEEEecCCCcccccchhhhccCCc
Confidence 34567889999999999999999999998887655 888886654 23344 467999999999999999999999999
Q ss_pred EEEEEEeCCChhhHHhhhhhhHHHHHhhhC-CCCCEEEEeeCcccccCcc
Q 044772 96 VFILAFSLISRPSYENISKKKWVPELRHYA-PSVPIVLVGTKLDLRKDRQ 144 (159)
Q Consensus 96 ~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~r~ 144 (159)
++|||+|.+|++.+.++.. .+...+.... ...|+++++||.|+++.-.
T Consensus 87 ~lIfVvDS~Dr~Ri~eak~-eL~~~l~~~~l~~~~llv~aNKqD~~~als 135 (181)
T KOG0070|consen 87 GLIFVVDSSDRERIEEAKE-ELHRMLAEPELRNAPLLVFANKQDLPGALS 135 (181)
T ss_pred EEEEEEeCCcHHHHHHHHH-HHHHHHcCcccCCceEEEEechhhccccCC
Confidence 9999999999999999885 5544444433 5899999999999986544
No 129
>KOG3883 consensus Ras family small GTPase [Signal transduction mechanisms]
Probab=99.87 E-value=1.1e-21 Score=131.79 Aligned_cols=134 Identities=28% Similarity=0.386 Sum_probs=112.1
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCCC--CCcccceeeeeEEEEEEC-CeEEEEEEEeCCCcccc-cccccccccCCc
Q 044772 20 TKFIKCVTVRDGAVGKTCLLISYTGNTFP--TDYVPTVFDNFSANVMVD-GRTVNLGLWDTAGQEDY-NRLRPLSYRGAD 95 (159)
Q Consensus 20 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~-~~~~~~~i~D~~g~~~~-~~~~~~~~~~~~ 95 (159)
.+..|++++|..++|||+|+.+++.+... ..+.||+++.|...+..+ +.+-.+.++||.|-... ..+-++|+.-+|
T Consensus 7 Gk~~kVvVcG~k~VGKTaileQl~yg~~~~~~e~~pTiEDiY~~svet~rgarE~l~lyDTaGlq~~~~eLprhy~q~aD 86 (198)
T KOG3883|consen 7 GKVCKVVVCGMKSVGKTAILEQLLYGNHVPGTELHPTIEDIYVASVETDRGAREQLRLYDTAGLQGGQQELPRHYFQFAD 86 (198)
T ss_pred CcceEEEEECCccccHHHHHHHHHhccCCCCCccccchhhheeEeeecCCChhheEEEeecccccCchhhhhHhHhccCc
Confidence 35679999999999999999999966654 457889999997766654 45667999999997665 445678999999
Q ss_pred EEEEEEeCCChhhHHhhhhhhHHHHHhhhC--CCCCEEEEeeCcccccCccccccCCCcccc
Q 044772 96 VFILAFSLISRPSYENISKKKWVPELRHYA--PSVPIVLVGTKLDLRKDRQFHLDYPGAYTI 155 (159)
Q Consensus 96 ~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~--~~~piilv~nK~Dl~~~r~v~~~~~~~~~~ 155 (159)
++++||+..|++||+.+. .+...|.+.. ..+||++++||+|+.+.++|..+-+..||-
T Consensus 87 afVLVYs~~d~eSf~rv~--llKk~Idk~KdKKEvpiVVLaN~rdr~~p~~vd~d~A~~Wa~ 146 (198)
T KOG3883|consen 87 AFVLVYSPMDPESFQRVE--LLKKEIDKHKDKKEVPIVVLANKRDRAEPREVDMDVAQIWAK 146 (198)
T ss_pred eEEEEecCCCHHHHHHHH--HHHHHHhhccccccccEEEEechhhcccchhcCHHHHHHHHh
Confidence 999999999999999887 6666666655 479999999999999999999998888774
No 130
>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=99.86 E-value=3.2e-21 Score=130.76 Aligned_cols=117 Identities=16% Similarity=0.267 Sum_probs=90.9
Q ss_pred cceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEE
Q 044772 19 ATKFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADVFI 98 (159)
Q Consensus 19 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i 98 (159)
..+.++|+++|..|+|||+++++|.+.. .+...||.+.... .+ ....+.+++||.+|+-.+++.|++||..+|++|
T Consensus 13 kerE~riLiLGLdNsGKTti~~kl~~~~-~~~i~pt~gf~Ik-tl--~~~~~~L~iwDvGGq~~lr~~W~nYfestdglI 88 (185)
T KOG0073|consen 13 KEREVRILILGLDNSGKTTIVKKLLGED-TDTISPTLGFQIK-TL--EYKGYTLNIWDVGGQKTLRSYWKNYFESTDGLI 88 (185)
T ss_pred hhheeEEEEEecCCCCchhHHHHhcCCC-ccccCCccceeeE-EE--EecceEEEEEEcCCcchhHHHHHHhhhccCeEE
Confidence 4568999999999999999999998766 3344555543222 22 334477999999999999999999999999999
Q ss_pred EEEeCCChhhHHhhhhhhHHHHHhhh-CCCCCEEEEeeCcccc
Q 044772 99 LAFSLISRPSYENISKKKWVPELRHY-APSVPIVLVGTKLDLR 140 (159)
Q Consensus 99 ~v~d~~~~~s~~~~~~~~~~~~i~~~-~~~~piilv~nK~Dl~ 140 (159)
+|+|.+|+..|++... .+-+.+..- ....|++|++||.|++
T Consensus 89 wvvDssD~~r~~e~~~-~L~~lL~eerlaG~~~Lvlank~dl~ 130 (185)
T KOG0073|consen 89 WVVDSSDRMRMQECKQ-ELTELLVEERLAGAPLLVLANKQDLP 130 (185)
T ss_pred EEEECchHHHHHHHHH-HHHHHHhhhhhcCCceEEEEecCcCc
Confidence 9999999999987663 222222221 1368999999999997
No 131
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=99.85 E-value=5.5e-21 Score=137.79 Aligned_cols=118 Identities=11% Similarity=0.205 Sum_probs=88.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCcccccccccccccCC-cEEEEEEe
Q 044772 24 KCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGA-DVFILAFS 102 (159)
Q Consensus 24 ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~-~~~i~v~d 102 (159)
+|+++|++|||||||+++|..+.+...+.++............+....+.+||+||++.+...+..+++.+ +++|+|+|
T Consensus 2 ~vll~G~~~sGKTsL~~~l~~~~~~~t~~s~~~~~~~~~~~~~~~~~~~~l~D~pG~~~~~~~~~~~~~~~~~~vV~VvD 81 (203)
T cd04105 2 TVLLLGPSDSGKTALFTKLTTGKYRSTVTSIEPNVATFILNSEGKGKKFRLVDVPGHPKLRDKLLETLKNSAKGIVFVVD 81 (203)
T ss_pred eEEEEcCCCCCHHHHHHHHhcCCCCCccCcEeecceEEEeecCCCCceEEEEECCCCHHHHHHHHHHHhccCCEEEEEEE
Confidence 68999999999999999999988876654442221121111123456799999999999988888889998 99999999
Q ss_pred CCCh-hhHHhhhhhhHHHHHh----hhCCCCCEEEEeeCcccccCc
Q 044772 103 LISR-PSYENISKKKWVPELR----HYAPSVPIVLVGTKLDLRKDR 143 (159)
Q Consensus 103 ~~~~-~s~~~~~~~~~~~~i~----~~~~~~piilv~nK~Dl~~~r 143 (159)
+.+. .++..+. .|+..+. ....++|++|++||+|+...+
T Consensus 82 ~~~~~~~~~~~~--~~l~~il~~~~~~~~~~pvliv~NK~Dl~~a~ 125 (203)
T cd04105 82 SATFQKNLKDVA--EFLYDILTDLEKVKNKIPVLIACNKQDLFTAK 125 (203)
T ss_pred CccchhHHHHHH--HHHHHHHHHHhhccCCCCEEEEecchhhcccC
Confidence 9987 6677665 4433332 223589999999999987543
No 132
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=99.85 E-value=1.9e-20 Score=127.79 Aligned_cols=120 Identities=42% Similarity=0.608 Sum_probs=96.5
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeeeEE-EEEECCeEEEEEEEeCCCcccccccccccccCCcEEEEE
Q 044772 22 FIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSA-NVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADVFILA 100 (159)
Q Consensus 22 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~-~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v 100 (159)
.+||+++|.+|+|||||++++....+...+.++.+..+.. .+..++..+.+.+||++|+..+..++..+++.+++++.+
T Consensus 1 ~~ki~~~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~~ 80 (161)
T TIGR00231 1 EIKIVIVGDPNVGKSTLLNRLLGNKFITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQEDYRAIRRLYYRAVESSLRV 80 (161)
T ss_pred CeEEEEECCCCCCHHHHHHHHhCCCCcCcCCCCceeeeeEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhhhEEEEE
Confidence 3799999999999999999999988776766666655533 455666668899999999998888888889999999999
Q ss_pred EeCCCh-hhHHhhhhhhHHHHHhhhCC-CCCEEEEeeCcccccC
Q 044772 101 FSLISR-PSYENISKKKWVPELRHYAP-SVPIVLVGTKLDLRKD 142 (159)
Q Consensus 101 ~d~~~~-~s~~~~~~~~~~~~i~~~~~-~~piilv~nK~Dl~~~ 142 (159)
+|.... .++..... .|...+..... +.|+++++||+|+...
T Consensus 81 ~d~~~~v~~~~~~~~-~~~~~~~~~~~~~~p~ivv~nK~D~~~~ 123 (161)
T TIGR00231 81 FDIVILVLDVEEILE-KQTKEIIHHAESNVPIILVGNKIDLRDA 123 (161)
T ss_pred EEEeeeehhhhhHhH-HHHHHHHHhcccCCcEEEEEEcccCCcc
Confidence 998876 56655443 56666665554 8999999999999764
No 133
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=99.84 E-value=2.6e-20 Score=130.44 Aligned_cols=117 Identities=21% Similarity=0.310 Sum_probs=91.3
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEE
Q 044772 20 TKFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL 99 (159)
Q Consensus 20 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~ 99 (159)
.+.++|+++|++|+|||||++++.+..+. .+.++.+... ..+..++ ..+.+||++|+..+...+..++..++++++
T Consensus 12 ~~~~~v~i~G~~g~GKStLl~~l~~~~~~-~~~~t~g~~~-~~i~~~~--~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~ 87 (173)
T cd04155 12 SEEPRILILGLDNAGKTTILKQLASEDIS-HITPTQGFNI-KTVQSDG--FKLNVWDIGGQRAIRPYWRNYFENTDCLIY 87 (173)
T ss_pred CCccEEEEEccCCCCHHHHHHHHhcCCCc-ccCCCCCcce-EEEEECC--EEEEEEECCCCHHHHHHHHHHhcCCCEEEE
Confidence 45799999999999999999999987653 3455555332 2334444 568999999998888888889999999999
Q ss_pred EEeCCChhhHHhhhhhhHHHHHhhhC--CCCCEEEEeeCcccccC
Q 044772 100 AFSLISRPSYENISKKKWVPELRHYA--PSVPIVLVGTKLDLRKD 142 (159)
Q Consensus 100 v~d~~~~~s~~~~~~~~~~~~i~~~~--~~~piilv~nK~Dl~~~ 142 (159)
|||+.+..++.... .|+..+.... .++|+++++||+|+.+.
T Consensus 88 v~D~~~~~~~~~~~--~~~~~~~~~~~~~~~p~ivv~nK~D~~~~ 130 (173)
T cd04155 88 VIDSADKKRLEEAG--AELVELLEEEKLAGVPVLVFANKQDLATA 130 (173)
T ss_pred EEeCCCHHHHHHHH--HHHHHHHhChhhcCCCEEEEEECCCCccC
Confidence 99999988888776 5554443322 47999999999998654
No 134
>KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.83 E-value=3e-20 Score=123.23 Aligned_cols=121 Identities=21% Similarity=0.281 Sum_probs=96.7
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEE
Q 044772 20 TKFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL 99 (159)
Q Consensus 20 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~ 99 (159)
.++++|+++|..++||||++.+|.-+.. ....||.+.... .+.+.+ +++++||.+|+++.+..|++||....++||
T Consensus 15 ~KE~~ilmlGLd~aGKTtiLyKLkl~~~-~~~ipTvGFnve-tVtykN--~kfNvwdvGGqd~iRplWrhYy~gtqglIF 90 (180)
T KOG0071|consen 15 NKEMRILMLGLDAAGKTTILYKLKLGQS-VTTIPTVGFNVE-TVTYKN--VKFNVWDVGGQDKIRPLWRHYYTGTQGLIF 90 (180)
T ss_pred cccceEEEEecccCCceehhhHHhcCCC-cccccccceeEE-EEEeee--eEEeeeeccCchhhhHHHHhhccCCceEEE
Confidence 4588999999999999999999986664 344566664332 334444 679999999999999999999999999999
Q ss_pred EEeCCChhhHHhhhhhhHHHHHhhhC-CCCCEEEEeeCcccccCccc
Q 044772 100 AFSLISRPSYENISKKKWVPELRHYA-PSVPIVLVGTKLDLRKDRQF 145 (159)
Q Consensus 100 v~d~~~~~s~~~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~r~v 145 (159)
|.|..+.+..+++.. ++..-|.... ++.|++|++||.|+++.+.+
T Consensus 91 V~Dsa~~dr~eeAr~-ELh~ii~~~em~~~~~LvlANkQDlp~A~~p 136 (180)
T KOG0071|consen 91 VVDSADRDRIEEARN-ELHRIINDREMRDAIILILANKQDLPDAMKP 136 (180)
T ss_pred EEeccchhhHHHHHH-HHHHHhCCHhhhcceEEEEecCcccccccCH
Confidence 999999888887775 5555444333 58999999999999986654
No 135
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=99.83 E-value=4.2e-20 Score=130.03 Aligned_cols=114 Identities=18% Similarity=0.173 Sum_probs=83.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC-------CCCCcccce------eeeeE-E--EEEE---CCeEEEEEEEeCCCccccc
Q 044772 24 KCVTVRDGAVGKTCLLISYTGNT-------FPTDYVPTV------FDNFS-A--NVMV---DGRTVNLGLWDTAGQEDYN 84 (159)
Q Consensus 24 ki~vvG~~~~GKSsli~~l~~~~-------~~~~~~~t~------~~~~~-~--~~~~---~~~~~~~~i~D~~g~~~~~ 84 (159)
+|+++|++++|||||+++|++.. +...+.++. +..+. . ...+ ++..+.+++||++|++.+.
T Consensus 2 ni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~ 81 (179)
T cd01890 2 NFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVDFS 81 (179)
T ss_pred cEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChhhH
Confidence 79999999999999999998742 222222222 11111 1 1222 5567889999999999998
Q ss_pred ccccccccCCcEEEEEEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCcccccC
Q 044772 85 RLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKD 142 (159)
Q Consensus 85 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~ 142 (159)
..+..++..+|++|+|||+++..++.... .|..... .++|+++|+||+|+.+.
T Consensus 82 ~~~~~~~~~ad~~i~v~D~~~~~~~~~~~--~~~~~~~---~~~~iiiv~NK~Dl~~~ 134 (179)
T cd01890 82 YEVSRSLAACEGALLLVDATQGVEAQTLA--NFYLALE---NNLEIIPVINKIDLPSA 134 (179)
T ss_pred HHHHHHHHhcCeEEEEEECCCCccHhhHH--HHHHHHH---cCCCEEEEEECCCCCcC
Confidence 88888999999999999999877666655 4443222 46899999999998653
No 136
>PTZ00099 rab6; Provisional
Probab=99.82 E-value=3.9e-20 Score=130.59 Aligned_cols=107 Identities=34% Similarity=0.547 Sum_probs=92.5
Q ss_pred CCCCCCcccceeeee-EEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEEEEeCCChhhHHhhhhhhHHHHHhh
Q 044772 45 NTFPTDYVPTVFDNF-SANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRH 123 (159)
Q Consensus 45 ~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~ 123 (159)
+.|.+.|.+|.+..+ ...+.+++..+.+.|||++|++.+..++..++++++++|+|||++++.+|..+. .|+..+..
T Consensus 3 ~~F~~~~~~Tig~~~~~~~~~~~~~~v~l~iwDt~G~e~~~~~~~~~~~~ad~~ilv~D~t~~~sf~~~~--~w~~~i~~ 80 (176)
T PTZ00099 3 DTFDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTT--KWIQDILN 80 (176)
T ss_pred CCcCCCCCCccceEEEEEEEEECCEEEEEEEEECCChHHhhhccHHHhCCCcEEEEEEECCCHHHHHHHH--HHHHHHHH
Confidence 467788899998776 456778888999999999999999999999999999999999999999999997 89998876
Q ss_pred hC-CCCCEEEEeeCcccccCccccccCCCcc
Q 044772 124 YA-PSVPIVLVGTKLDLRKDRQFHLDYPGAY 153 (159)
Q Consensus 124 ~~-~~~piilv~nK~Dl~~~r~v~~~~~~~~ 153 (159)
.. +.+|++|||||+||.+.+.++.+++..+
T Consensus 81 ~~~~~~piilVgNK~DL~~~~~v~~~e~~~~ 111 (176)
T PTZ00099 81 ERGKDVIIALVGNKTDLGDLRKVTYEEGMQK 111 (176)
T ss_pred hcCCCCeEEEEEECcccccccCCCHHHHHHH
Confidence 54 5789999999999988787876665443
No 137
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.82 E-value=1.2e-19 Score=126.55 Aligned_cols=118 Identities=20% Similarity=0.196 Sum_probs=81.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCC-cc-cceeeeeEEEEEECCeEEEEEEEeCCCccc----cccccccc---ccCC
Q 044772 24 KCVTVRDGAVGKTCLLISYTGNTFPTD-YV-PTVFDNFSANVMVDGRTVNLGLWDTAGQED----YNRLRPLS---YRGA 94 (159)
Q Consensus 24 ki~vvG~~~~GKSsli~~l~~~~~~~~-~~-~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~----~~~~~~~~---~~~~ 94 (159)
+|+++|++|||||||+++|.+...... +. .+.... ...+..++ ...+.+||+||... ...+...+ +..+
T Consensus 2 ~v~ivG~~~~GKStl~~~l~~~~~~v~~~~~~t~~~~-~~~~~~~~-~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~ 79 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISNAKPKIADYPFTTLVPN-LGVVRVDD-GRSFVVADIPGLIEGASEGKGLGHRFLRHIERT 79 (170)
T ss_pred CeEEECCCCCCHHHHHHHHhcCCccccCCCccccCCc-ceEEEcCC-CCeEEEEecCcccCcccccCCchHHHHHHHHhC
Confidence 689999999999999999997654211 11 111111 11222233 24699999999632 12222333 3469
Q ss_pred cEEEEEEeCCCh-hhHHhhhhhhHHHHHhhhC---CCCCEEEEeeCcccccCccc
Q 044772 95 DVFILAFSLISR-PSYENISKKKWVPELRHYA---PSVPIVLVGTKLDLRKDRQF 145 (159)
Q Consensus 95 ~~~i~v~d~~~~-~s~~~~~~~~~~~~i~~~~---~~~piilv~nK~Dl~~~r~v 145 (159)
+++++|+|++++ .++..+. .|++.+.... .+.|+++|+||+|+.+.+.+
T Consensus 80 d~vi~v~D~~~~~~~~~~~~--~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~ 132 (170)
T cd01898 80 RLLLHVIDLSGDDDPVEDYK--TIRNELELYNPELLEKPRIVVLNKIDLLDEEEL 132 (170)
T ss_pred CEEEEEEecCCCCCHHHHHH--HHHHHHHHhCccccccccEEEEEchhcCCchhh
Confidence 999999999998 7888887 8888877664 36899999999999765443
No 138
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=99.82 E-value=2.7e-19 Score=124.56 Aligned_cols=120 Identities=19% Similarity=0.154 Sum_probs=79.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCC-cccceeeeeEEEEEECCeEEEEEEEeCCCccccccccc---------cccc
Q 044772 23 IKCVTVRDGAVGKTCLLISYTGNTFPTD-YVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRLRP---------LSYR 92 (159)
Q Consensus 23 ~ki~vvG~~~~GKSsli~~l~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~---------~~~~ 92 (159)
.+|+++|++|+|||||+++|.+..+... +..+........ .....+.+.+||+||+.......+ ....
T Consensus 1 ~~i~~~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~--~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~ 78 (168)
T cd01897 1 PTLVIAGYPNVGKSSLVNKLTRAKPEVAPYPFTTKSLFVGH--FDYKYLRWQVIDTPGLLDRPLEERNTIEMQAITALAH 78 (168)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcCCCccCCCCCcccceeEEE--EccCceEEEEEECCCcCCccccCCchHHHHHHHHHHh
Confidence 3799999999999999999998876422 211111111111 222346799999999743211001 0112
Q ss_pred CCcEEEEEEeCCChhhH--HhhhhhhHHHHHhhhCCCCCEEEEeeCcccccCcccc
Q 044772 93 GADVFILAFSLISRPSY--ENISKKKWVPELRHYAPSVPIVLVGTKLDLRKDRQFH 146 (159)
Q Consensus 93 ~~~~~i~v~d~~~~~s~--~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~r~v~ 146 (159)
.++++++|+|++++.++ .... .|+..+.....+.|+++|+||+|+.+.+.+.
T Consensus 79 ~~d~~l~v~d~~~~~~~~~~~~~--~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~ 132 (168)
T cd01897 79 LRAAVLFLFDPSETCGYSLEEQL--SLFEEIKPLFKNKPVIVVLNKIDLLTFEDLS 132 (168)
T ss_pred ccCcEEEEEeCCcccccchHHHH--HHHHHHHhhcCcCCeEEEEEccccCchhhHH
Confidence 35899999999987664 3333 7888877665689999999999997665544
No 139
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=99.81 E-value=1.4e-19 Score=129.49 Aligned_cols=117 Identities=16% Similarity=0.127 Sum_probs=83.2
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhc--CCCCCCcc------------cceeeee-EEEEEECCeEEEEEEEeCCCccccccc
Q 044772 22 FIKCVTVRDGAVGKTCLLISYTG--NTFPTDYV------------PTVFDNF-SANVMVDGRTVNLGLWDTAGQEDYNRL 86 (159)
Q Consensus 22 ~~ki~vvG~~~~GKSsli~~l~~--~~~~~~~~------------~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~ 86 (159)
..+|+++|.+++|||||+++|+. +.+...+. .+.+... .....+....+.+.+||++|++.|...
T Consensus 2 ~r~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~ 81 (194)
T cd01891 2 IRNIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYKDTKINIVDTPGHADFGGE 81 (194)
T ss_pred ccEEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEECCEEEEEEECCCcHHHHHH
Confidence 35899999999999999999997 55544321 1122222 222334444577999999999999998
Q ss_pred ccccccCCcEEEEEEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCcccccCc
Q 044772 87 RPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKDR 143 (159)
Q Consensus 87 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~r 143 (159)
+..+++++|++++|||+.+.. +.... .|+..+.. .++|+++|+||+|+.+.+
T Consensus 82 ~~~~~~~~d~~ilV~d~~~~~-~~~~~--~~~~~~~~--~~~p~iiv~NK~Dl~~~~ 133 (194)
T cd01891 82 VERVLSMVDGVLLLVDASEGP-MPQTR--FVLKKALE--LGLKPIVVINKIDRPDAR 133 (194)
T ss_pred HHHHHHhcCEEEEEEECCCCc-cHHHH--HHHHHHHH--cCCCEEEEEECCCCCCCC
Confidence 899999999999999998742 22222 34443332 368999999999996544
No 140
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=99.81 E-value=2.3e-20 Score=126.83 Aligned_cols=96 Identities=25% Similarity=0.269 Sum_probs=70.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCcc-----cccccccccccCCcEEE
Q 044772 24 KCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQE-----DYNRLRPLSYRGADVFI 98 (159)
Q Consensus 24 ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~-----~~~~~~~~~~~~~~~~i 98 (159)
||+++|++|||||||+++|.++.+. +.+|.+.. ... .+||++|+. .+.... ..++++|+++
T Consensus 2 kv~liG~~~vGKSsL~~~l~~~~~~--~~~t~~~~------~~~-----~~iDt~G~~~~~~~~~~~~~-~~~~~ad~vi 67 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGEEIL--YKKTQAVE------YND-----GAIDTPGEYVENRRLYSALI-VTAADADVIA 67 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcCCccc--cccceeEE------EcC-----eeecCchhhhhhHHHHHHHH-HHhhcCCEEE
Confidence 8999999999999999999987652 33333221 111 689999972 233332 3478999999
Q ss_pred EEEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCccccc
Q 044772 99 LAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRK 141 (159)
Q Consensus 99 ~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~ 141 (159)
+|||++++.++... .|...+ ..|+++|+||+|+.+
T Consensus 68 lv~d~~~~~s~~~~---~~~~~~-----~~p~ilv~NK~Dl~~ 102 (142)
T TIGR02528 68 LVQSATDPESRFPP---GFASIF-----VKPVIGLVTKIDLAE 102 (142)
T ss_pred EEecCCCCCcCCCh---hHHHhc-----cCCeEEEEEeeccCC
Confidence 99999999988652 555432 239999999999964
No 141
>KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only]
Probab=99.81 E-value=2.3e-20 Score=124.69 Aligned_cols=117 Identities=22% Similarity=0.333 Sum_probs=98.2
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEEE
Q 044772 21 KFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADVFILA 100 (159)
Q Consensus 21 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v 100 (159)
....+.++|..++|||||++.+..+.+.....||.+.+..+ +....+.+.+||+||+..|+.+|..|++.++++++|
T Consensus 19 ~emel~lvGLq~sGKtt~Vn~ia~g~~~edmiptvGfnmrk---~tkgnvtiklwD~gGq~rfrsmWerycR~v~aivY~ 95 (186)
T KOG0075|consen 19 EEMELSLVGLQNSGKTTLVNVIARGQYLEDMIPTVGFNMRK---VTKGNVTIKLWDLGGQPRFRSMWERYCRGVSAIVYV 95 (186)
T ss_pred heeeEEEEeeccCCcceEEEEEeeccchhhhcccccceeEE---eccCceEEEEEecCCCccHHHHHHHHhhcCcEEEEE
Confidence 35679999999999999999999888888888888765543 344446799999999999999999999999999999
Q ss_pred EeCCChhhHHhhhhhhHHHHHhhhC-CCCCEEEEeeCccccc
Q 044772 101 FSLISRPSYENISKKKWVPELRHYA-PSVPIVLVGTKLDLRK 141 (159)
Q Consensus 101 ~d~~~~~s~~~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~ 141 (159)
+|..+++.+..... ++...+.+.. .++|++++|||.|+++
T Consensus 96 VDaad~~k~~~sr~-EL~~LL~k~~l~gip~LVLGnK~d~~~ 136 (186)
T KOG0075|consen 96 VDAADPDKLEASRS-ELHDLLDKPSLTGIPLLVLGNKIDLPG 136 (186)
T ss_pred eecCCcccchhhHH-HHHHHhcchhhcCCcEEEecccccCcc
Confidence 99999988876664 5555555544 5899999999999975
No 142
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=99.80 E-value=9e-19 Score=118.20 Aligned_cols=115 Identities=44% Similarity=0.820 Sum_probs=90.4
Q ss_pred EEcCCCCCHHHHHHHHhcCCC-CCCcccceeeeeEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEEEEeCCC
Q 044772 27 TVRDGAVGKTCLLISYTGNTF-PTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLIS 105 (159)
Q Consensus 27 vvG~~~~GKSsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~ 105 (159)
++|++|+|||||++++.+... ...+.++....+............+.+||++|...+...+..+++.++++++|+|+++
T Consensus 1 iiG~~~~GKStl~~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~ 80 (157)
T cd00882 1 VVGDSGVGKTSLLNRLLGGEFVPEEYETTIIDFYSKTIEVDGKKVKLQIWDTAGQERFRSLRRLYYRGADGIILVYDVTD 80 (157)
T ss_pred CCCcCCCcHHHHHHHHHhCCcCCcccccchhheeeEEEEECCEEEEEEEEecCChHHHHhHHHHHhcCCCEEEEEEECcC
Confidence 589999999999999998876 4455555533334455556667889999999998888777888999999999999999
Q ss_pred hhhHHhhhhhhH--HHHHhhhCCCCCEEEEeeCcccccCc
Q 044772 106 RPSYENISKKKW--VPELRHYAPSVPIVLVGTKLDLRKDR 143 (159)
Q Consensus 106 ~~s~~~~~~~~~--~~~i~~~~~~~piilv~nK~Dl~~~r 143 (159)
+.++.... .| .........+.|+++++||+|+....
T Consensus 81 ~~~~~~~~--~~~~~~~~~~~~~~~~~ivv~nk~D~~~~~ 118 (157)
T cd00882 81 RESFENVK--EWLLLILINKEGENIPIILVGNKIDLPEER 118 (157)
T ss_pred HHHHHHHH--HHHHHHHHhhccCCCcEEEEEecccccccc
Confidence 99888887 54 33333344689999999999986543
No 143
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.79 E-value=6.6e-19 Score=126.74 Aligned_cols=121 Identities=19% Similarity=0.195 Sum_probs=83.8
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCC--cccceeeeeEEEEEECCeEEEEEEEeCCCcccc---------ccccc
Q 044772 20 TKFIKCVTVRDGAVGKTCLLISYTGNTFPTD--YVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDY---------NRLRP 88 (159)
Q Consensus 20 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~--~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~---------~~~~~ 88 (159)
...++|+++|++|||||||++++.+..+... +.++.... ...+..++. ..+.+||++|.... ...+
T Consensus 39 ~~~~~I~iiG~~g~GKStLl~~l~~~~~~~~~~~~~t~~~~-~~~~~~~~~-~~~~i~Dt~G~~~~~~~~~~~~~~~~~- 115 (204)
T cd01878 39 SGIPTVALVGYTNAGKSTLFNALTGADVYAEDQLFATLDPT-TRRLRLPDG-REVLLTDTVGFIRDLPHQLVEAFRSTL- 115 (204)
T ss_pred cCCCeEEEECCCCCCHHHHHHHHhcchhccCCccceeccce-eEEEEecCC-ceEEEeCCCccccCCCHHHHHHHHHHH-
Confidence 3457999999999999999999998864322 22333222 223333332 26899999997321 1111
Q ss_pred ccccCCcEEEEEEeCCChhhHHhhhhhhHHHHHhhhC-CCCCEEEEeeCcccccCccc
Q 044772 89 LSYRGADVFILAFSLISRPSYENISKKKWVPELRHYA-PSVPIVLVGTKLDLRKDRQF 145 (159)
Q Consensus 89 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~r~v 145 (159)
..+.++|++++|+|++++.++.... .|.+.+.... .+.|+++|+||+|+......
T Consensus 116 ~~~~~~d~ii~v~D~~~~~~~~~~~--~~~~~l~~~~~~~~~viiV~NK~Dl~~~~~~ 171 (204)
T cd01878 116 EEVAEADLLLHVVDASDPDYEEQIE--TVEKVLKELGAEDIPMILVLNKIDLLDDEEL 171 (204)
T ss_pred HHHhcCCeEEEEEECCCCChhhHHH--HHHHHHHHcCcCCCCEEEEEEccccCChHHH
Confidence 1356899999999999988887765 6666665543 46899999999999765543
No 144
>KOG1673 consensus Ras GTPases [General function prediction only]
Probab=99.79 E-value=5.1e-19 Score=119.32 Aligned_cols=120 Identities=27% Similarity=0.555 Sum_probs=108.7
Q ss_pred CcceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeee-EEEEEECCeEEEEEEEeCCCcccccccccccccCCcE
Q 044772 18 TATKFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNF-SANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADV 96 (159)
Q Consensus 18 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ 96 (159)
.....+||-++|++..|||||+-++.++.+.+.+..+.+.++ .+.+.+.+..+.+.+||.+|++++..+....++++-+
T Consensus 16 ~n~Vslkv~llGD~qiGKTs~mvkYV~~~~de~~~q~~GvN~mdkt~~i~~t~IsfSIwdlgG~~~~~n~lPiac~dsva 95 (205)
T KOG1673|consen 16 SNLVSLKVGLLGDAQIGKTSLMVKYVQNEYDEEYTQTLGVNFMDKTVSIRGTDISFSIWDLGGQREFINMLPIACKDSVA 95 (205)
T ss_pred ccceEEEEEeecccccCceeeehhhhcchhHHHHHHHhCccceeeEEEecceEEEEEEEecCCcHhhhccCceeecCcEE
Confidence 566789999999999999999999999998888888888887 5688889999999999999999999999999999999
Q ss_pred EEEEEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCccc
Q 044772 97 FILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDL 139 (159)
Q Consensus 97 ~i~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl 139 (159)
++|+||.+++.+++.+. .|+...+..+...--|+||+|.|+
T Consensus 96 IlFmFDLt~r~TLnSi~--~WY~QAr~~NktAiPilvGTKyD~ 136 (205)
T KOG1673|consen 96 ILFMFDLTRRSTLNSIK--EWYRQARGLNKTAIPILVGTKYDL 136 (205)
T ss_pred EEEEEecCchHHHHHHH--HHHHHHhccCCccceEEeccchHh
Confidence 99999999999999999 999999888765445788999996
No 145
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.79 E-value=1.1e-18 Score=120.73 Aligned_cols=110 Identities=23% Similarity=0.214 Sum_probs=74.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC---CCCCccc--ceeeeeEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEE
Q 044772 24 KCVTVRDGAVGKTCLLISYTGNT---FPTDYVP--TVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADVFI 98 (159)
Q Consensus 24 ki~vvG~~~~GKSsli~~l~~~~---~~~~~~~--t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i 98 (159)
.|+++|++|||||||+++|.+.. +...+.+ |....+. .....+ ...+.+||+||++.+......++.++|+++
T Consensus 2 ~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~-~~~~~~-~~~~~~~DtpG~~~~~~~~~~~~~~ad~ii 79 (164)
T cd04171 2 IIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFA-YLDLPS-GKRLGFIDVPGHEKFIKNMLAGAGGIDLVL 79 (164)
T ss_pred EEEEEecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeE-EEEecC-CcEEEEEECCChHHHHHHHHhhhhcCCEEE
Confidence 58999999999999999998642 3222222 2232222 233332 347999999999888766667788999999
Q ss_pred EEEeCCCh---hhHHhhhhhhHHHHHhhhCCCCCEEEEeeCcccccC
Q 044772 99 LAFSLISR---PSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKD 142 (159)
Q Consensus 99 ~v~d~~~~---~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~ 142 (159)
+|+|+++. +++..+ ..+.. ....|+++++||+|+...
T Consensus 80 ~V~d~~~~~~~~~~~~~------~~~~~-~~~~~~ilv~NK~Dl~~~ 119 (164)
T cd04171 80 LVVAADEGIMPQTREHL------EILEL-LGIKRGLVVLTKADLVDE 119 (164)
T ss_pred EEEECCCCccHhHHHHH------HHHHH-hCCCcEEEEEECccccCH
Confidence 99999863 232222 11111 123499999999999754
No 146
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.79 E-value=1.3e-18 Score=121.00 Aligned_cols=113 Identities=17% Similarity=0.192 Sum_probs=80.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeee-EEEEEEC-CeEEEEEEEeCCCcccccccccccccCCcEEEEEE
Q 044772 24 KCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNF-SANVMVD-GRTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAF 101 (159)
Q Consensus 24 ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~-~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 101 (159)
.|+++|++|+|||||+++|..+.+...+.++..... ...+..+ .....+.+||+||++.+..++..++..+|++++|+
T Consensus 2 ~i~iiG~~~~GKtsli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~il~v~ 81 (168)
T cd01887 2 VVTVMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAFEVPAEVLKIPGITFIDTPGHEAFTNMRARGASLTDIAILVV 81 (168)
T ss_pred EEEEEecCCCCHHHHHHHHHhcccccccCCCeEEeeccEEEecccCCcceEEEEeCCCcHHHHHHHHHHHhhcCEEEEEE
Confidence 489999999999999999998887655333332222 1222332 23567999999999888888888899999999999
Q ss_pred eCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCccccc
Q 044772 102 SLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRK 141 (159)
Q Consensus 102 d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~ 141 (159)
|+++....... ..+..+.. .+.|+++|+||+|+.+
T Consensus 82 d~~~~~~~~~~---~~~~~~~~--~~~p~ivv~NK~Dl~~ 116 (168)
T cd01887 82 AADDGVMPQTI---EAIKLAKA--ANVPFIVALNKIDKPN 116 (168)
T ss_pred ECCCCccHHHH---HHHHHHHH--cCCCEEEEEEceeccc
Confidence 99874322211 11222222 3689999999999864
No 147
>KOG0096 consensus GTPase Ran/TC4/GSP1 (nuclear protein transport pathway), small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.77 E-value=2.6e-18 Score=119.33 Aligned_cols=120 Identities=30% Similarity=0.486 Sum_probs=108.3
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeeeEEEEEECC-eEEEEEEEeCCCcccccccccccccCCcEEE
Q 044772 20 TKFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDG-RTVNLGLWDTAGQEDYNRLRPLSYRGADVFI 98 (159)
Q Consensus 20 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i 98 (159)
...++++++|..|.|||+++.+.+.+.|..+|.+|.+......+...+ ..+.+..||+.|++.+.....-|+-....+|
T Consensus 8 ~~~fklvlvGdgg~gKtt~vkr~ltgeFe~~y~at~Gv~~~pl~f~tn~g~irf~~wdtagqEk~gglrdgyyI~~qcAi 87 (216)
T KOG0096|consen 8 GLTFKLVLVGDGGTGKTTFVKRHLTGEFEKTYPATLGVEVHPLLFDTNRGQIRFNVWDTAGQEKKGGLRDGYYIQGQCAI 87 (216)
T ss_pred cceEEEEEecCCcccccchhhhhhcccceecccCcceeEEeeeeeecccCcEEEEeeecccceeecccccccEEecceeE
Confidence 457899999999999999999999999999999999887765444443 3599999999999999999999998999999
Q ss_pred EEEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCccccc
Q 044772 99 LAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRK 141 (159)
Q Consensus 99 ~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~ 141 (159)
++||+.++-++..+. +|...+.+.++++||++.|||.|...
T Consensus 88 imFdVtsr~t~~n~~--rwhrd~~rv~~NiPiv~cGNKvDi~~ 128 (216)
T KOG0096|consen 88 IMFDVTSRFTYKNVP--RWHRDLVRVRENIPIVLCGNKVDIKA 128 (216)
T ss_pred EEeeeeehhhhhcch--HHHHHHHHHhcCCCeeeeccceeccc
Confidence 999999999999999 99999999999999999999999853
No 148
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=99.77 E-value=5.4e-18 Score=134.64 Aligned_cols=115 Identities=23% Similarity=0.283 Sum_probs=85.3
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCC--CCCCcccceeeeeEEEEEECCeEEEEEEEeCCCcccccccc--------cc
Q 044772 20 TKFIKCVTVRDGAVGKTCLLISYTGNT--FPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRLR--------PL 89 (159)
Q Consensus 20 ~~~~ki~vvG~~~~GKSsli~~l~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~--------~~ 89 (159)
...+||+++|++|||||||+|+|++.. +...+.++..+.....+.+++. .+.+|||+|...+...+ ..
T Consensus 201 ~~g~kVvIvG~~nvGKSSLiN~L~~~~~aivs~~pgtTrd~~~~~i~~~g~--~v~l~DTaG~~~~~~~ie~~gi~~~~~ 278 (442)
T TIGR00450 201 DDGFKLAIVGSPNVGKSSLLNALLKQDRAIVSDIKGTTRDVVEGDFELNGI--LIKLLDTAGIREHADFVERLGIEKSFK 278 (442)
T ss_pred hcCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcEEEEEEEEEEECCE--EEEEeeCCCcccchhHHHHHHHHHHHH
Confidence 456899999999999999999999875 3455555554444556666664 47899999986544322 35
Q ss_pred cccCCcEEEEEEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCcccccC
Q 044772 90 SYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKD 142 (159)
Q Consensus 90 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~ 142 (159)
+++++|++++|||++++.++... |+..+.. .+.|+++|+||+|+.+.
T Consensus 279 ~~~~aD~il~V~D~s~~~s~~~~----~l~~~~~--~~~piIlV~NK~Dl~~~ 325 (442)
T TIGR00450 279 AIKQADLVIYVLDASQPLTKDDF----LIIDLNK--SKKPFILVLNKIDLKIN 325 (442)
T ss_pred HHhhCCEEEEEEECCCCCChhHH----HHHHHhh--CCCCEEEEEECccCCCc
Confidence 77899999999999988776532 5554432 36899999999999653
No 149
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.76 E-value=4e-18 Score=131.92 Aligned_cols=121 Identities=20% Similarity=0.190 Sum_probs=85.0
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCCCC-C-cccceeeeeEEEEEECCeEEEEEEEeCCCcc---------cccccccc
Q 044772 21 KFIKCVTVRDGAVGKTCLLISYTGNTFPT-D-YVPTVFDNFSANVMVDGRTVNLGLWDTAGQE---------DYNRLRPL 89 (159)
Q Consensus 21 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~-~-~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~---------~~~~~~~~ 89 (159)
..++|+++|.+|+|||||+|+|.+..+.. + +.+|... ....+.+.+. ..+.+|||+|.. .|...+ .
T Consensus 188 ~~~~ValvG~~NvGKSSLln~L~~~~~~v~~~~~tT~d~-~~~~i~~~~~-~~i~l~DT~G~~~~l~~~lie~f~~tl-e 264 (351)
T TIGR03156 188 DVPTVALVGYTNAGKSTLFNALTGADVYAADQLFATLDP-TTRRLDLPDG-GEVLLTDTVGFIRDLPHELVAAFRATL-E 264 (351)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCceeeccCCccccCC-EEEEEEeCCC-ceEEEEecCcccccCCHHHHHHHHHHH-H
Confidence 34899999999999999999999876532 2 2333333 3344555322 368999999972 222221 2
Q ss_pred cccCCcEEEEEEeCCChhhHHhhhhhhHHHHHhhhC-CCCCEEEEeeCcccccCcccc
Q 044772 90 SYRGADVFILAFSLISRPSYENISKKKWVPELRHYA-PSVPIVLVGTKLDLRKDRQFH 146 (159)
Q Consensus 90 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~r~v~ 146 (159)
.+.++|++++|+|++++.++..+. .|...+.... .+.|+++|+||+|+...+.+.
T Consensus 265 ~~~~ADlil~VvD~s~~~~~~~~~--~~~~~L~~l~~~~~piIlV~NK~Dl~~~~~v~ 320 (351)
T TIGR03156 265 EVREADLLLHVVDASDPDREEQIE--AVEKVLEELGAEDIPQLLVYNKIDLLDEPRIE 320 (351)
T ss_pred HHHhCCEEEEEEECCCCchHHHHH--HHHHHHHHhccCCCCEEEEEEeecCCChHhHH
Confidence 477899999999999988877765 5555555443 478999999999997654443
No 150
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=99.76 E-value=5.7e-18 Score=116.53 Aligned_cols=111 Identities=16% Similarity=0.182 Sum_probs=77.0
Q ss_pred EEcCCCCCHHHHHHHHhcCCCCCCccc-ceeeeeEEEEEECCeEEEEEEEeCCCccccccc------ccccc--cCCcEE
Q 044772 27 TVRDGAVGKTCLLISYTGNTFPTDYVP-TVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRL------RPLSY--RGADVF 97 (159)
Q Consensus 27 vvG~~~~GKSsli~~l~~~~~~~~~~~-t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~------~~~~~--~~~~~~ 97 (159)
++|.+|+|||||++++.+..+...+.+ +........+..++ ..+.+|||||+..+... ...++ +.++++
T Consensus 1 l~G~~~~GKssl~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~v 78 (158)
T cd01879 1 LVGNPNVGKTTLFNALTGARQKVGNWPGVTVEKKEGRFKLGG--KEIEIVDLPGTYSLSPYSEDEKVARDFLLGEKPDLI 78 (158)
T ss_pred CCCCCCCCHHHHHHHHhcCcccccCCCCcccccceEEEeeCC--eEEEEEECCCccccCCCChhHHHHHHHhcCCCCcEE
Confidence 589999999999999998764433223 22222234455555 46899999998766542 34555 489999
Q ss_pred EEEEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCcccccCcccc
Q 044772 98 ILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKDRQFH 146 (159)
Q Consensus 98 i~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~r~v~ 146 (159)
++|+|..+++... .|+..+.. .+.|+++|+||+|+.+.+.+.
T Consensus 79 i~v~d~~~~~~~~-----~~~~~~~~--~~~~~iiv~NK~Dl~~~~~~~ 120 (158)
T cd01879 79 VNVVDATNLERNL-----YLTLQLLE--LGLPVVVALNMIDEAEKRGIK 120 (158)
T ss_pred EEEeeCCcchhHH-----HHHHHHHH--cCCCEEEEEehhhhcccccch
Confidence 9999998754432 44444433 368999999999997665443
No 151
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=99.75 E-value=4.1e-18 Score=131.01 Aligned_cols=120 Identities=20% Similarity=0.188 Sum_probs=84.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCC-CCcccceeeeeEEEEEECCeEEEEEEEeCCCccc----cccc---ccccccCCc
Q 044772 24 KCVTVRDGAVGKTCLLISYTGNTFP-TDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQED----YNRL---RPLSYRGAD 95 (159)
Q Consensus 24 ki~vvG~~~~GKSsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~----~~~~---~~~~~~~~~ 95 (159)
.|.|||.|+||||||+++|.+.+.. ..|..|+-.-....+.+. ....+.+||+||.-. ...+ +...+..++
T Consensus 160 dVglVG~PNaGKSTLln~ls~a~~~va~ypfTT~~p~~G~v~~~-~~~~~~i~D~PGli~ga~~~~gLg~~flrhie~a~ 238 (335)
T PRK12299 160 DVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLHPNLGVVRVD-DYKSFVIADIPGLIEGASEGAGLGHRFLKHIERTR 238 (335)
T ss_pred CEEEEcCCCCCHHHHHHHHHcCCCccCCCCCceeCceEEEEEeC-CCcEEEEEeCCCccCCCCccccHHHHHHHHhhhcC
Confidence 5999999999999999999975532 233333222222233332 223589999999632 1112 233466899
Q ss_pred EEEEEEeCCChhhHHhhhhhhHHHHHhhhCC---CCCEEEEeeCcccccCcccc
Q 044772 96 VFILAFSLISRPSYENISKKKWVPELRHYAP---SVPIVLVGTKLDLRKDRQFH 146 (159)
Q Consensus 96 ~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~~---~~piilv~nK~Dl~~~r~v~ 146 (159)
++|+|+|+++.++++.+. .|..++..+.+ +.|++||+||+|+.+.+.+.
T Consensus 239 vlI~ViD~s~~~s~e~~~--~~~~EL~~~~~~L~~kp~IIV~NKiDL~~~~~~~ 290 (335)
T PRK12299 239 LLLHLVDIEAVDPVEDYK--TIRNELEKYSPELADKPRILVLNKIDLLDEEEER 290 (335)
T ss_pred EEEEEEcCCCCCCHHHHH--HHHHHHHHhhhhcccCCeEEEEECcccCCchhHH
Confidence 999999999887888887 89888887753 78999999999997655443
No 152
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=99.75 E-value=9.5e-18 Score=133.69 Aligned_cols=116 Identities=25% Similarity=0.283 Sum_probs=85.0
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCC--CCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccc--------cccc
Q 044772 21 KFIKCVTVRDGAVGKTCLLISYTGNTF--PTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRL--------RPLS 90 (159)
Q Consensus 21 ~~~ki~vvG~~~~GKSsli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~--------~~~~ 90 (159)
..++|+++|.+|+|||||+|+|.+... ......+..+.....+..++ ..+.+|||+|...+... ...+
T Consensus 214 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g--~~i~l~DT~G~~~~~~~ie~~gi~~~~~~ 291 (449)
T PRK05291 214 EGLKVVIAGRPNVGKSSLLNALLGEERAIVTDIAGTTRDVIEEHINLDG--IPLRLIDTAGIRETDDEVEKIGIERSREA 291 (449)
T ss_pred cCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcccccEEEEEEECC--eEEEEEeCCCCCCCccHHHHHHHHHHHHH
Confidence 447999999999999999999998763 34444444444444555655 45899999998654432 2236
Q ss_pred ccCCcEEEEEEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCcccccCccc
Q 044772 91 YRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKDRQF 145 (159)
Q Consensus 91 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~r~v 145 (159)
+.++|++++|||++++.++.... .|.. ..+.|+++|+||+|+...+.+
T Consensus 292 ~~~aD~il~VvD~s~~~s~~~~~--~l~~-----~~~~piiiV~NK~DL~~~~~~ 339 (449)
T PRK05291 292 IEEADLVLLVLDASEPLTEEDDE--ILEE-----LKDKPVIVVLNKADLTGEIDL 339 (449)
T ss_pred HHhCCEEEEEecCCCCCChhHHH--HHHh-----cCCCCcEEEEEhhhccccchh
Confidence 78899999999999888777543 4433 347899999999999765544
No 153
>KOG0074 consensus GTP-binding ADP-ribosylation factor-like protein ARL3 [General function prediction only]
Probab=99.75 E-value=1.1e-17 Score=111.36 Aligned_cols=117 Identities=25% Similarity=0.340 Sum_probs=94.1
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEE
Q 044772 20 TKFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL 99 (159)
Q Consensus 20 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~ 99 (159)
.+.+||+++|..++|||||+..|..... ....||.+.... .+..++. +.+++||++|+...+..|..||.+.|++|+
T Consensus 15 ~rEirilllGldnAGKTT~LKqL~sED~-~hltpT~GFn~k-~v~~~g~-f~LnvwDiGGqr~IRpyWsNYyenvd~lIy 91 (185)
T KOG0074|consen 15 RREIRILLLGLDNAGKTTFLKQLKSEDP-RHLTPTNGFNTK-KVEYDGT-FHLNVWDIGGQRGIRPYWSNYYENVDGLIY 91 (185)
T ss_pred cceEEEEEEecCCCcchhHHHHHccCCh-hhccccCCcceE-EEeecCc-EEEEEEecCCccccchhhhhhhhccceEEE
Confidence 6889999999999999999999986554 445667665544 3444443 689999999999999999999999999999
Q ss_pred EEeCCChhhHHhhhhhhHHHHHhhhC-CCCCEEEEeeCcccc
Q 044772 100 AFSLISRPSYENISKKKWVPELRHYA-PSVPIVLVGTKLDLR 140 (159)
Q Consensus 100 v~d~~~~~s~~~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~ 140 (159)
|+|.+|...|+++.. .+.+.+..-. ..+|+.+.+||.|+.
T Consensus 92 VIDS~D~krfeE~~~-el~ELleeeKl~~vpvlIfankQdll 132 (185)
T KOG0074|consen 92 VIDSTDEKRFEEISE-ELVELLEEEKLAEVPVLIFANKQDLL 132 (185)
T ss_pred EEeCCchHhHHHHHH-HHHHHhhhhhhhccceeehhhhhHHH
Confidence 999999999998875 4444333322 479999999999974
No 154
>PRK04213 GTP-binding protein; Provisional
Probab=99.75 E-value=3.1e-18 Score=122.93 Aligned_cols=116 Identities=22% Similarity=0.150 Sum_probs=73.1
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCC-----------ccccccccc
Q 044772 20 TKFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAG-----------QEDYNRLRP 88 (159)
Q Consensus 20 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g-----------~~~~~~~~~ 88 (159)
...++|+++|++|||||||+++|.+..+...+.++.... ......+ .+.+||++| ++.+...+.
T Consensus 7 ~~~~~i~i~G~~~~GKSsLin~l~~~~~~~~~~~~~t~~-~~~~~~~----~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~ 81 (201)
T PRK04213 7 DRKPEIVFVGRSNVGKSTLVRELTGKKVRVGKRPGVTRK-PNHYDWG----DFILTDLPGFGFMSGVPKEVQEKIKDEIV 81 (201)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCceeeC-ceEEeec----ceEEEeCCccccccccCHHHHHHHHHHHH
Confidence 456899999999999999999999887665444433211 1122222 489999999 455555555
Q ss_pred cccc----CCcEEEEEEeCCChhhHHh---------hhhhhHHHHHhhhCCCCCEEEEeeCcccccCc
Q 044772 89 LSYR----GADVFILAFSLISRPSYEN---------ISKKKWVPELRHYAPSVPIVLVGTKLDLRKDR 143 (159)
Q Consensus 89 ~~~~----~~~~~i~v~d~~~~~s~~~---------~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~r 143 (159)
.++. .++++++|+|..+...+.. ... .++..+.. .++|+++|+||+|+.+.+
T Consensus 82 ~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~--~~~p~iiv~NK~Dl~~~~ 146 (201)
T PRK04213 82 RYIEDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDV-EMFDFLRE--LGIPPIVAVNKMDKIKNR 146 (201)
T ss_pred HHHHhhhhhheEEEEEEeCccccccccccccCCCcHHHH-HHHHHHHH--cCCCeEEEEECccccCcH
Confidence 5543 3567778887654221100 000 11222222 379999999999996543
No 155
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.75 E-value=1.3e-17 Score=133.80 Aligned_cols=113 Identities=22% Similarity=0.282 Sum_probs=79.1
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCC-CCcccc-eeeeeEEEEEECCeEEEEEEEeCCCccc--------ccccccccc
Q 044772 22 FIKCVTVRDGAVGKTCLLISYTGNTFP-TDYVPT-VFDNFSANVMVDGRTVNLGLWDTAGQED--------YNRLRPLSY 91 (159)
Q Consensus 22 ~~ki~vvG~~~~GKSsli~~l~~~~~~-~~~~~t-~~~~~~~~~~~~~~~~~~~i~D~~g~~~--------~~~~~~~~~ 91 (159)
..+|+|+|.+|||||||+++|++.... ....+. ..+........++. .+.+|||+|.+. +......++
T Consensus 38 ~~~V~IvG~~nvGKSSL~nrl~~~~~~~v~~~~gvT~d~~~~~~~~~~~--~~~l~DT~G~~~~~~~~~~~~~~~~~~~~ 115 (472)
T PRK03003 38 LPVVAVVGRPNVGKSTLVNRILGRREAVVEDVPGVTRDRVSYDAEWNGR--RFTVVDTGGWEPDAKGLQASVAEQAEVAM 115 (472)
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCcCcccccCCCCCCEeeEEEEEEECCc--EEEEEeCCCcCCcchhHHHHHHHHHHHHH
Confidence 468999999999999999999987642 122222 22222334444554 488999999763 223345578
Q ss_pred cCCcEEEEEEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCccccc
Q 044772 92 RGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRK 141 (159)
Q Consensus 92 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~ 141 (159)
+.+|++|+|||+++..++... .|...+.. .+.|+++|+||+|+.+
T Consensus 116 ~~aD~il~VvD~~~~~s~~~~---~i~~~l~~--~~~piilV~NK~Dl~~ 160 (472)
T PRK03003 116 RTADAVLFVVDATVGATATDE---AVARVLRR--SGKPVILAANKVDDER 160 (472)
T ss_pred HhCCEEEEEEECCCCCCHHHH---HHHHHHHH--cCCCEEEEEECccCCc
Confidence 899999999999987665432 44444443 4689999999999864
No 156
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=99.75 E-value=8.7e-18 Score=117.54 Aligned_cols=117 Identities=22% Similarity=0.237 Sum_probs=78.5
Q ss_pred EEcCCCCCHHHHHHHHhcCCC-CCCcccceeeeeEEEEEECCeEEEEEEEeCCCccc----ccccc---cccccCCcEEE
Q 044772 27 TVRDGAVGKTCLLISYTGNTF-PTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQED----YNRLR---PLSYRGADVFI 98 (159)
Q Consensus 27 vvG~~~~GKSsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~----~~~~~---~~~~~~~~~~i 98 (159)
++|++|||||||+++|.+... ...+..+........+..++ ...+.+||+||... ...+. ..++..+++++
T Consensus 1 iiG~~~~GKStll~~l~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~d~ii 79 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNAKPKVANYPFTTLEPNLGVVEVPD-GARIQVADIPGLIEGASEGRGLGNQFLAHIRRADAIL 79 (176)
T ss_pred CCCCCCCcHHHHHHHHhcCCccccCCCceeecCcceEEEcCC-CCeEEEEeccccchhhhcCCCccHHHHHHHhccCEEE
Confidence 589999999999999998864 23333332222222333441 34589999999632 22222 23467899999
Q ss_pred EEEeCCCh------hhHHhhhhhhHHHHHhhhC--------CCCCEEEEeeCcccccCcccc
Q 044772 99 LAFSLISR------PSYENISKKKWVPELRHYA--------PSVPIVLVGTKLDLRKDRQFH 146 (159)
Q Consensus 99 ~v~d~~~~------~s~~~~~~~~~~~~i~~~~--------~~~piilv~nK~Dl~~~r~v~ 146 (159)
+|+|+.++ ..+.... .|...+.... .+.|+++|+||+|+...+.+.
T Consensus 80 ~v~d~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~ 139 (176)
T cd01881 80 HVVDASEDDDIGGVDPLEDYE--ILNAELKLYDLETILGLLTAKPVIYVLNKIDLDDAEELE 139 (176)
T ss_pred EEEeccCCccccccCHHHHHH--HHHHHHHHhhhhhHHHHHhhCCeEEEEEchhcCchhHHH
Confidence 99999987 4666665 5666665432 368999999999997655544
No 157
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=99.74 E-value=3.7e-17 Score=112.05 Aligned_cols=113 Identities=26% Similarity=0.314 Sum_probs=78.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCC--CCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccc--------cccccc
Q 044772 23 IKCVTVRDGAVGKTCLLISYTGNTFP--TDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRL--------RPLSYR 92 (159)
Q Consensus 23 ~ki~vvG~~~~GKSsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~--------~~~~~~ 92 (159)
++|+++|++|+|||||++++.+.... ....++...........++ ..+.+||+||...+... ...++.
T Consensus 2 ~~i~l~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~ 79 (157)
T cd04164 2 IKVVIVGKPNVGKSSLLNALAGRDRAIVSDIAGTTRDVIEESIDIGG--IPVRLIDTAGIRETEDEIEKIGIERAREAIE 79 (157)
T ss_pred cEEEEECCCCCCHHHHHHHHHCCceEeccCCCCCccceEEEEEEeCC--EEEEEEECCCcCCCcchHHHHHHHHHHHHHh
Confidence 58999999999999999999987642 2222332222233334443 46899999997554322 224567
Q ss_pred CCcEEEEEEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCcccccCcc
Q 044772 93 GADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKDRQ 144 (159)
Q Consensus 93 ~~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~r~ 144 (159)
.++++++|+|+.++.+..... .|.. ..+.|+++|+||+|+.....
T Consensus 80 ~~~~~v~v~d~~~~~~~~~~~--~~~~-----~~~~~vi~v~nK~D~~~~~~ 124 (157)
T cd04164 80 EADLVLFVIDASRGLDEEDLE--ILEL-----PADKPIIVVLNKSDLLPDSE 124 (157)
T ss_pred hCCEEEEEEECCCCCCHHHHH--HHHh-----hcCCCEEEEEEchhcCCccc
Confidence 899999999999877766554 2222 34789999999999975443
No 158
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.74 E-value=1.4e-17 Score=114.28 Aligned_cols=113 Identities=24% Similarity=0.236 Sum_probs=76.5
Q ss_pred EEEcCCCCCHHHHHHHHhcCC--CCCCcccceeeeeEEEEEECCeEEEEEEEeCCCcccccc--------cccccccCCc
Q 044772 26 VTVRDGAVGKTCLLISYTGNT--FPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNR--------LRPLSYRGAD 95 (159)
Q Consensus 26 ~vvG~~~~GKSsli~~l~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~--------~~~~~~~~~~ 95 (159)
+++|.+|+|||||+++|.+.. +...+.++...........++ ..+.+||+||...+.. ....++..+|
T Consensus 1 ~l~G~~~~GKssl~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~d 78 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLTGRRDAIVEDTPGVTRDRIYGEAEWGG--REFILIDTGGIEPDDEGISKEIREQAELAIEEAD 78 (157)
T ss_pred CccCCCCCCHHHHHHHHhCCcEEeecCCCCceeCceeEEEEECC--eEEEEEECCCCCCchhHHHHHHHHHHHHHHHhCC
Confidence 479999999999999999775 233333333333333444444 5689999999877543 2345678899
Q ss_pred EEEEEEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCcccccCccc
Q 044772 96 VFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKDRQF 145 (159)
Q Consensus 96 ~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~r~v 145 (159)
++++|+|..+..+.... .+...+.. .+.|+++|+||+|+......
T Consensus 79 ~ii~v~d~~~~~~~~~~---~~~~~~~~--~~~piiiv~nK~D~~~~~~~ 123 (157)
T cd01894 79 VILFVVDGREGLTPADE---EIAKYLRK--SKKPVILVVNKVDNIKEEDE 123 (157)
T ss_pred EEEEEEeccccCCccHH---HHHHHHHh--cCCCEEEEEECcccCChHHH
Confidence 99999999875444332 22222322 25899999999999765443
No 159
>PRK15494 era GTPase Era; Provisional
Probab=99.74 E-value=6e-17 Score=125.02 Aligned_cols=116 Identities=19% Similarity=0.304 Sum_probs=78.7
Q ss_pred cceeeEEEEEcCCCCCHHHHHHHHhcCCCC---CCcccceeeeeEEEEEECCeEEEEEEEeCCCccc-ccccc-------
Q 044772 19 ATKFIKCVTVRDGAVGKTCLLISYTGNTFP---TDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQED-YNRLR------- 87 (159)
Q Consensus 19 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~---~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~-~~~~~------- 87 (159)
..+..+|+++|++|||||||+++|++.++. +.+..| .......+..++ .++.+|||||... +..+.
T Consensus 49 ~~k~~kV~ivG~~nvGKSTLin~l~~~k~~ivs~k~~tT-r~~~~~~~~~~~--~qi~~~DTpG~~~~~~~l~~~~~r~~ 125 (339)
T PRK15494 49 NQKTVSVCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQTT-RSIITGIITLKD--TQVILYDTPGIFEPKGSLEKAMVRCA 125 (339)
T ss_pred ccceeEEEEEcCCCCCHHHHHHHHhCCceeeccCCCCCc-cCcEEEEEEeCC--eEEEEEECCCcCCCcccHHHHHHHHH
Confidence 456679999999999999999999988764 222222 222233444454 3589999999843 22211
Q ss_pred cccccCCcEEEEEEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCcccccC
Q 044772 88 PLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKD 142 (159)
Q Consensus 88 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~ 142 (159)
...+.++|++++|+|..+ +|..... .|+..+... +.|.++|+||+|+.+.
T Consensus 126 ~~~l~~aDvil~VvD~~~--s~~~~~~-~il~~l~~~--~~p~IlViNKiDl~~~ 175 (339)
T PRK15494 126 WSSLHSADLVLLIIDSLK--SFDDITH-NILDKLRSL--NIVPIFLLNKIDIESK 175 (339)
T ss_pred HHHhhhCCEEEEEEECCC--CCCHHHH-HHHHHHHhc--CCCEEEEEEhhcCccc
Confidence 124679999999999664 5655543 566665542 4677889999998653
No 160
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.73 E-value=2.6e-17 Score=132.10 Aligned_cols=114 Identities=24% Similarity=0.254 Sum_probs=82.1
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCC--CCCcccceeeeeEEEEEECCeEEEEEEEeCCCcc----------cccccc-
Q 044772 21 KFIKCVTVRDGAVGKTCLLISYTGNTF--PTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQE----------DYNRLR- 87 (159)
Q Consensus 21 ~~~ki~vvG~~~~GKSsli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~----------~~~~~~- 87 (159)
..+||+++|.+|||||||+++|++... ...+.++..+.....+..++.. +.+|||+|.. .+..+.
T Consensus 210 ~~~kI~iiG~~nvGKSSLin~l~~~~~~~~s~~~gtT~d~~~~~~~~~~~~--~~l~DTaG~~~~~~~~~~~e~~~~~~~ 287 (472)
T PRK03003 210 GPRRVALVGKPNVGKSSLLNKLAGEERSVVDDVAGTTVDPVDSLIELGGKT--WRFVDTAGLRRRVKQASGHEYYASLRT 287 (472)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCccCCcceEEEEECCEE--EEEEECCCccccccccchHHHHHHHHH
Confidence 468999999999999999999998764 2333334333334455566654 5799999952 222221
Q ss_pred cccccCCcEEEEEEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCccccc
Q 044772 88 PLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRK 141 (159)
Q Consensus 88 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~ 141 (159)
..+++++|++|+|||+++..++..+ .++..+.. .+.|++||+||+|+.+
T Consensus 288 ~~~i~~ad~vilV~Da~~~~s~~~~---~~~~~~~~--~~~piIiV~NK~Dl~~ 336 (472)
T PRK03003 288 HAAIEAAEVAVVLIDASEPISEQDQ---RVLSMVIE--AGRALVLAFNKWDLVD 336 (472)
T ss_pred HHHHhcCCEEEEEEeCCCCCCHHHH---HHHHHHHH--cCCCEEEEEECcccCC
Confidence 2357899999999999988887766 34444433 4789999999999964
No 161
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=99.73 E-value=3.1e-17 Score=115.91 Aligned_cols=117 Identities=17% Similarity=0.121 Sum_probs=77.1
Q ss_pred CCcceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeeeEE-EEEECCeEEEEEEEeCCCcc----------cccc
Q 044772 17 TTATKFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSA-NVMVDGRTVNLGLWDTAGQE----------DYNR 85 (159)
Q Consensus 17 ~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~-~~~~~~~~~~~~i~D~~g~~----------~~~~ 85 (159)
.+..+..+|+++|++|+|||||++++.+..+...+.++.+.+... ....++ .+.+||+||.. .+..
T Consensus 13 ~~~~~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~ 89 (179)
T TIGR03598 13 LPPDDGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFEVND---GFRLVDLPGYGYAKVSKEEKEKWQK 89 (179)
T ss_pred CCCCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEEeCC---cEEEEeCCCCccccCChhHHHHHHH
Confidence 345778899999999999999999999886544434444332221 122232 58999999952 2222
Q ss_pred ccccccc---CCcEEEEEEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCccccc
Q 044772 86 LRPLSYR---GADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRK 141 (159)
Q Consensus 86 ~~~~~~~---~~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~ 141 (159)
+...+++ .++++++|+|.+++-+.... .++..+.. .+.|+++++||+|+..
T Consensus 90 ~~~~~l~~~~~~~~ii~vvd~~~~~~~~~~---~~~~~~~~--~~~pviiv~nK~D~~~ 143 (179)
T TIGR03598 90 LIEEYLEKRENLKGVVLLMDIRHPLKELDL---EMLEWLRE--RGIPVLIVLTKADKLK 143 (179)
T ss_pred HHHHHHHhChhhcEEEEEecCCCCCCHHHH---HHHHHHHH--cCCCEEEEEECcccCC
Confidence 3334444 36799999999875444433 22333322 3689999999999864
No 162
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.72 E-value=3.9e-17 Score=129.91 Aligned_cols=112 Identities=22% Similarity=0.185 Sum_probs=78.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCC--CCCcccceeeeeEEEEEECCeEEEEEEEeCCCccc--------cccccccccc
Q 044772 23 IKCVTVRDGAVGKTCLLISYTGNTF--PTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQED--------YNRLRPLSYR 92 (159)
Q Consensus 23 ~ki~vvG~~~~GKSsli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~--------~~~~~~~~~~ 92 (159)
.+|+++|.+|||||||+++|.+... ...+.++..+.....+..++ ..+.+|||||.+. +......++.
T Consensus 2 ~~I~ivG~~~vGKStL~n~l~~~~~~~v~~~~~~t~d~~~~~~~~~~--~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~ 79 (435)
T PRK00093 2 PVVAIVGRPNVGKSTLFNRLTGKRDAIVADTPGVTRDRIYGEAEWLG--REFILIDTGGIEPDDDGFEKQIREQAELAIE 79 (435)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeeCCCCCCcccceEEEEEECC--cEEEEEECCCCCCcchhHHHHHHHHHHHHHH
Confidence 5899999999999999999998764 23333333333334445555 5699999999876 2222345678
Q ss_pred CCcEEEEEEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCccccc
Q 044772 93 GADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRK 141 (159)
Q Consensus 93 ~~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~ 141 (159)
.+|++++|+|..+..+........|+.. .+.|+++|+||+|+.+
T Consensus 80 ~ad~il~vvd~~~~~~~~~~~~~~~l~~-----~~~piilv~NK~D~~~ 123 (435)
T PRK00093 80 EADVILFVVDGRAGLTPADEEIAKILRK-----SNKPVILVVNKVDGPD 123 (435)
T ss_pred hCCEEEEEEECCCCCCHHHHHHHHHHHH-----cCCcEEEEEECccCcc
Confidence 9999999999987544332211144443 2689999999999754
No 163
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=99.72 E-value=1.6e-17 Score=131.89 Aligned_cols=124 Identities=26% Similarity=0.353 Sum_probs=100.2
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEE
Q 044772 20 TKFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL 99 (159)
Q Consensus 20 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~ 99 (159)
.+.+||+++|+.|+||||||-.+...++.+.-.+..+ ............+...+.|++..++-......-++.++++.+
T Consensus 7 ~kdVRIvliGD~G~GKtSLImSL~~eef~~~VP~rl~-~i~IPadvtPe~vpt~ivD~ss~~~~~~~l~~EirkA~vi~l 85 (625)
T KOG1707|consen 7 LKDVRIVLIGDEGVGKTSLIMSLLEEEFVDAVPRRLP-RILIPADVTPENVPTSIVDTSSDSDDRLCLRKEIRKADVICL 85 (625)
T ss_pred ccceEEEEECCCCccHHHHHHHHHhhhccccccccCC-ccccCCccCcCcCceEEEecccccchhHHHHHHHhhcCEEEE
Confidence 5679999999999999999999999999866333332 222222333445568999998766666666778899999999
Q ss_pred EEeCCChhhHHhhhhhhHHHHHhhhC---CCCCEEEEeeCcccccCccc
Q 044772 100 AFSLISRPSYENISKKKWVPELRHYA---PSVPIVLVGTKLDLRKDRQF 145 (159)
Q Consensus 100 v~d~~~~~s~~~~~~~~~~~~i~~~~---~~~piilv~nK~Dl~~~r~v 145 (159)
+|+++++++.+.++. .|++.+++.. .++||||||||+|+.+...-
T Consensus 86 vyavd~~~T~D~ist-~WLPlir~~~~~~~~~PVILvGNK~d~~~~~~~ 133 (625)
T KOG1707|consen 86 VYAVDDESTVDRIST-KWLPLIRQLFGDYHETPVILVGNKSDNGDNENN 133 (625)
T ss_pred EEecCChHHhhhhhh-hhhhhhhcccCCCccCCEEEEeeccCCcccccc
Confidence 999999999999998 9999999988 68999999999999765544
No 164
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=99.72 E-value=4.5e-17 Score=133.48 Aligned_cols=116 Identities=18% Similarity=0.159 Sum_probs=85.6
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCC-------CCCCcccce------eeee-EEE--EEE---CCeEEEEEEEeCCCcc
Q 044772 21 KFIKCVTVRDGAVGKTCLLISYTGNT-------FPTDYVPTV------FDNF-SAN--VMV---DGRTVNLGLWDTAGQE 81 (159)
Q Consensus 21 ~~~ki~vvG~~~~GKSsli~~l~~~~-------~~~~~~~t~------~~~~-~~~--~~~---~~~~~~~~i~D~~g~~ 81 (159)
...+|+++|+.++|||||+++|+... +...+..+. +.+. ... +.+ ++..+.+++|||||+.
T Consensus 2 ~iRNi~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~ 81 (595)
T TIGR01393 2 NIRNFSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHV 81 (595)
T ss_pred CeeEEEEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcH
Confidence 35689999999999999999998642 112222211 2222 112 222 4566889999999999
Q ss_pred cccccccccccCCcEEEEEEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCccccc
Q 044772 82 DYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRK 141 (159)
Q Consensus 82 ~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~ 141 (159)
.|...+..++..+|++|+|||+++..+++... .|...+. .++|+++|+||+|+..
T Consensus 82 dF~~~v~~~l~~aD~aILVvDat~g~~~qt~~--~~~~~~~---~~ipiIiViNKiDl~~ 136 (595)
T TIGR01393 82 DFSYEVSRSLAACEGALLLVDAAQGIEAQTLA--NVYLALE---NDLEIIPVINKIDLPS 136 (595)
T ss_pred HHHHHHHHHHHhCCEEEEEecCCCCCCHhHHH--HHHHHHH---cCCCEEEEEECcCCCc
Confidence 99988889999999999999999877776665 5544332 3689999999999964
No 165
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=99.71 E-value=5.8e-17 Score=114.50 Aligned_cols=113 Identities=18% Similarity=0.063 Sum_probs=79.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCccccee--------------eeeE-EEEEECCeEEEEEEEeCCCccccccccc
Q 044772 24 KCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVF--------------DNFS-ANVMVDGRTVNLGLWDTAGQEDYNRLRP 88 (159)
Q Consensus 24 ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~--------------~~~~-~~~~~~~~~~~~~i~D~~g~~~~~~~~~ 88 (159)
+|+++|.+|+|||||+++|++......+..... .... ...........+.+||+||...+...+.
T Consensus 1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~ 80 (189)
T cd00881 1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEWPDRRVNFIDTPGHEDFSSEVI 80 (189)
T ss_pred CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEeeCCEEEEEEeCCCcHHHHHHHH
Confidence 489999999999999999998776543211110 0000 0111122245799999999988888888
Q ss_pred ccccCCcEEEEEEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCccccc
Q 044772 89 LSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRK 141 (159)
Q Consensus 89 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~ 141 (159)
.++..+|++++|+|..++...... .++..+.. .+.|+++++||+|+..
T Consensus 81 ~~~~~~d~~i~v~d~~~~~~~~~~---~~~~~~~~--~~~~i~iv~nK~D~~~ 128 (189)
T cd00881 81 RGLSVSDGAILVVDANEGVQPQTR---EHLRIARE--GGLPIIVAINKIDRVG 128 (189)
T ss_pred HHHHhcCEEEEEEECCCCCcHHHH---HHHHHHHH--CCCCeEEEEECCCCcc
Confidence 889999999999999876544332 34444433 4799999999999875
No 166
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=99.71 E-value=7.2e-17 Score=121.07 Aligned_cols=111 Identities=19% Similarity=0.225 Sum_probs=76.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCC--CCcccceeeeeEEEEEECCeEEEEEEEeCCCcccccc--------cccccccC
Q 044772 24 KCVTVRDGAVGKTCLLISYTGNTFP--TDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNR--------LRPLSYRG 93 (159)
Q Consensus 24 ki~vvG~~~~GKSsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~--------~~~~~~~~ 93 (159)
+|+++|.+|||||||+|+|++.++. .....|+..... .+...+. .++.+|||||...... ....++.+
T Consensus 2 ~V~liG~pnvGKSTLln~L~~~~~~~vs~~~~TTr~~i~-~i~~~~~-~qii~vDTPG~~~~~~~l~~~~~~~~~~~l~~ 79 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHGQKISITSPKAQTTRNRIS-GIHTTGA-SQIIFIDTPGFHEKKHSLNRLMMKEARSAIGG 79 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcEeecCCCCCcccCcEE-EEEEcCC-cEEEEEECcCCCCCcchHHHHHHHHHHHHHhh
Confidence 6899999999999999999988753 222333333222 2222222 4589999999753211 12346789
Q ss_pred CcEEEEEEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCcccccC
Q 044772 94 ADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKD 142 (159)
Q Consensus 94 ~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~ 142 (159)
+|++++|+|+++..++. . .++..+.. .+.|+++|+||+|+...
T Consensus 80 aDvvl~VvD~~~~~~~~--~--~i~~~l~~--~~~p~ilV~NK~Dl~~~ 122 (270)
T TIGR00436 80 VDLILFVVDSDQWNGDG--E--FVLTKLQN--LKRPVVLTRNKLDNKFK 122 (270)
T ss_pred CCEEEEEEECCCCCchH--H--HHHHHHHh--cCCCEEEEEECeeCCCH
Confidence 99999999999876654 2 44544443 36899999999999643
No 167
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=99.70 E-value=1.1e-16 Score=110.32 Aligned_cols=113 Identities=18% Similarity=0.160 Sum_probs=73.9
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCC--cccceeeeeEEEEEECCeEEEEEEEeCCCcccccc--------cccccc
Q 044772 22 FIKCVTVRDGAVGKTCLLISYTGNTFPTD--YVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNR--------LRPLSY 91 (159)
Q Consensus 22 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~--~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~--------~~~~~~ 91 (159)
..+|+++|++|+|||||++++.+..+... ...+... ............+.+||+||...... .....+
T Consensus 3 ~~~i~~~G~~g~GKttl~~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 80 (168)
T cd04163 3 SGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRN--RIRGIYTDDDAQIIFVDTPGIHKPKKKLGERMVKAAWSAL 80 (168)
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCceEeccCCCCceec--eEEEEEEcCCeEEEEEECCCCCcchHHHHHHHHHHHHHHH
Confidence 57899999999999999999998764321 1112111 11111223346789999999754332 223457
Q ss_pred cCCcEEEEEEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCccccc
Q 044772 92 RGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRK 141 (159)
Q Consensus 92 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~ 141 (159)
..++++++|+|..++ +..... .+...+... +.|+++|+||+|+..
T Consensus 81 ~~~d~i~~v~d~~~~--~~~~~~-~~~~~~~~~--~~~~iiv~nK~Dl~~ 125 (168)
T cd04163 81 KDVDLVLFVVDASEP--IGEGDE-FILELLKKS--KTPVILVLNKIDLVK 125 (168)
T ss_pred HhCCEEEEEEECCCc--cCchHH-HHHHHHHHh--CCCEEEEEEchhccc
Confidence 889999999999977 222221 333333332 589999999999974
No 168
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=99.70 E-value=1.1e-16 Score=122.88 Aligned_cols=118 Identities=19% Similarity=0.177 Sum_probs=80.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCC-CCcccceeeeeEEEEEECCeEEEEEEEeCCCcccc----cccccc---cccCC
Q 044772 23 IKCVTVRDGAVGKTCLLISYTGNTFP-TDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDY----NRLRPL---SYRGA 94 (159)
Q Consensus 23 ~ki~vvG~~~~GKSsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~----~~~~~~---~~~~~ 94 (159)
..|++||.++||||||+++|...+.. ..|..|+-.-....+.+++ ...+.+||+||.... ..+... .+.++
T Consensus 158 adV~lvG~pnaGKSTLl~~lt~~~~~va~y~fTT~~p~ig~v~~~~-~~~~~i~D~PGli~~a~~~~gLg~~flrhiera 236 (329)
T TIGR02729 158 ADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLVPNLGVVRVDD-GRSFVIADIPGLIEGASEGAGLGHRFLKHIERT 236 (329)
T ss_pred ccEEEEcCCCCCHHHHHHHHhcCCccccCCCCCccCCEEEEEEeCC-ceEEEEEeCCCcccCCcccccHHHHHHHHHHhh
Confidence 36999999999999999999976532 2333232111122333333 246899999997421 122222 35579
Q ss_pred cEEEEEEeCCCh---hhHHhhhhhhHHHHHhhhC---CCCCEEEEeeCcccccCc
Q 044772 95 DVFILAFSLISR---PSYENISKKKWVPELRHYA---PSVPIVLVGTKLDLRKDR 143 (159)
Q Consensus 95 ~~~i~v~d~~~~---~s~~~~~~~~~~~~i~~~~---~~~piilv~nK~Dl~~~r 143 (159)
+++++|+|+++. +.+..+. .|.+++..+. .+.|++||+||+|+...+
T Consensus 237 d~ll~VvD~s~~~~~~~~e~l~--~l~~EL~~~~~~l~~kp~IIV~NK~DL~~~~ 289 (329)
T TIGR02729 237 RVLLHLIDISPLDGRDPIEDYE--IIRNELKKYSPELAEKPRIVVLNKIDLLDEE 289 (329)
T ss_pred CEEEEEEcCccccccCHHHHHH--HHHHHHHHhhhhhccCCEEEEEeCccCCChH
Confidence 999999999976 5667766 7877777664 478999999999997543
No 169
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.70 E-value=1.7e-16 Score=110.28 Aligned_cols=115 Identities=22% Similarity=0.267 Sum_probs=76.8
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCC--CCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccc-----------cc
Q 044772 22 FIKCVTVRDGAVGKTCLLISYTGNTFP--TDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRL-----------RP 88 (159)
Q Consensus 22 ~~ki~vvG~~~~GKSsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~-----------~~ 88 (159)
.++|+++|.+|+|||||+++|++.... .....+........+..++. .+.+||++|....... ..
T Consensus 2 ~~~i~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~iiDtpG~~~~~~~~~~~e~~~~~~~~ 79 (174)
T cd01895 2 PIRIAIIGRPNVGKSSLVNALLGEERVIVSDIAGTTRDSIDVPFEYDGK--KYTLIDTAGIRRKGKVEEGIEKYSVLRTL 79 (174)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCccceeccCCCCCccCceeeEEEECCe--eEEEEECCCCccccchhccHHHHHHHHHH
Confidence 578999999999999999999987632 22222222222233344443 4789999996543110 12
Q ss_pred ccccCCcEEEEEEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCcccccCc
Q 044772 89 LSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKDR 143 (159)
Q Consensus 89 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~r 143 (159)
..+..+|++++|+|+.++.++... .++..+.. .+.|+++++||+|+.+.+
T Consensus 80 ~~~~~~d~vi~v~d~~~~~~~~~~---~~~~~~~~--~~~~~iiv~nK~Dl~~~~ 129 (174)
T cd01895 80 KAIERADVVLLVIDATEGITEQDL---RIAGLILE--EGKALVIVVNKWDLVEKD 129 (174)
T ss_pred HHHhhcCeEEEEEeCCCCcchhHH---HHHHHHHh--cCCCEEEEEeccccCCcc
Confidence 245789999999999988765543 33333322 368999999999997653
No 170
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.70 E-value=4.1e-16 Score=123.83 Aligned_cols=114 Identities=22% Similarity=0.245 Sum_probs=81.9
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCC--CCCcccceeeeeEEEEEECCeEEEEEEEeCCCcccccccc----------
Q 044772 20 TKFIKCVTVRDGAVGKTCLLISYTGNTF--PTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRLR---------- 87 (159)
Q Consensus 20 ~~~~ki~vvG~~~~GKSsli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~---------- 87 (159)
...++|+++|.+|+|||||+++|++... .....++..+.....+..++. .+.+|||+|........
T Consensus 170 ~~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~--~~~liDT~G~~~~~~~~~~~e~~~~~~ 247 (429)
T TIGR03594 170 DGPIKIAIIGRPNVGKSTLVNALLGEERVIVSDIAGTTRDSIDIPFERNGK--KYLLIDTAGIRRKGKVTEGVEKYSVLR 247 (429)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHCCCeeecCCCCCceECcEeEEEEECCc--EEEEEECCCccccccchhhHHHHHHHH
Confidence 4568999999999999999999998763 233444444444444445554 58899999975543321
Q ss_pred -cccccCCcEEEEEEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCcccc
Q 044772 88 -PLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLR 140 (159)
Q Consensus 88 -~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~ 140 (159)
..+++.+|++|+|+|+.+..+.... .++..+.. .+.|+++|+||+|+.
T Consensus 248 ~~~~~~~ad~~ilV~D~~~~~~~~~~---~~~~~~~~--~~~~iiiv~NK~Dl~ 296 (429)
T TIGR03594 248 TLKAIERADVVLLVLDATEGITEQDL---RIAGLILE--AGKALVIVVNKWDLV 296 (429)
T ss_pred HHHHHHhCCEEEEEEECCCCccHHHH---HHHHHHHH--cCCcEEEEEECcccC
Confidence 2357899999999999987666654 33343333 368999999999997
No 171
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=99.69 E-value=3.1e-16 Score=128.17 Aligned_cols=118 Identities=18% Similarity=0.220 Sum_probs=84.5
Q ss_pred CcceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeee-EEEEEECCeEEEEEEEeCCCcccccccccccccCCcE
Q 044772 18 TATKFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNF-SANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADV 96 (159)
Q Consensus 18 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ 96 (159)
...+..+|+++|+.++|||||+++|.+..+...+.+...... ...+..++. ..+.+|||||++.|..++...+..+|+
T Consensus 83 ~~~r~p~V~I~Ghvd~GKTSLl~~l~~~~v~~~e~~GIT~~ig~~~v~~~~~-~~i~~iDTPGhe~F~~~r~rga~~aDi 161 (587)
T TIGR00487 83 LVERPPVVTIMGHVDHGKTSLLDSIRKTKVAQGEAGGITQHIGAYHVENEDG-KMITFLDTPGHEAFTSMRARGAKVTDI 161 (587)
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHhCCcccccCCceeecceEEEEEECCC-cEEEEEECCCCcchhhHHHhhhccCCE
Confidence 345778999999999999999999998877655443332222 223334332 268999999999999998888999999
Q ss_pred EEEEEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCccccc
Q 044772 97 FILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRK 141 (159)
Q Consensus 97 ~i~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~ 141 (159)
+|+|||+++....+... . +.... ..++|+++++||+|+.+
T Consensus 162 aILVVda~dgv~~qT~e--~-i~~~~--~~~vPiIVviNKiDl~~ 201 (587)
T TIGR00487 162 VVLVVAADDGVMPQTIE--A-ISHAK--AANVPIIVAINKIDKPE 201 (587)
T ss_pred EEEEEECCCCCCHhHHH--H-HHHHH--HcCCCEEEEEECccccc
Confidence 99999988643222221 1 11111 13689999999999864
No 172
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=99.69 E-value=7e-17 Score=117.15 Aligned_cols=112 Identities=19% Similarity=0.188 Sum_probs=79.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCc-----------ccce------eeee-E--EEEEE---CCeEEEEEEEeCCCc
Q 044772 24 KCVTVRDGAVGKTCLLISYTGNTFPTDY-----------VPTV------FDNF-S--ANVMV---DGRTVNLGLWDTAGQ 80 (159)
Q Consensus 24 ki~vvG~~~~GKSsli~~l~~~~~~~~~-----------~~t~------~~~~-~--~~~~~---~~~~~~~~i~D~~g~ 80 (159)
+|+++|+.++|||||+.+|+........ ..+. +... . ..+.. ++..+.+.+||+||+
T Consensus 2 nv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtpG~ 81 (213)
T cd04167 2 NVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPGH 81 (213)
T ss_pred cEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECCCC
Confidence 6899999999999999999975543210 0110 0111 0 11111 345688999999999
Q ss_pred ccccccccccccCCcEEEEEEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCcccc
Q 044772 81 EDYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLR 140 (159)
Q Consensus 81 ~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~ 140 (159)
..|......++..+|++++|+|+.+..++... .|+..... .+.|+++|+||+|+.
T Consensus 82 ~~f~~~~~~~~~~aD~~llVvD~~~~~~~~~~---~~~~~~~~--~~~p~iiviNK~D~~ 136 (213)
T cd04167 82 VNFMDEVAAALRLSDGVVLVVDVVEGVTSNTE---RLIRHAIL--EGLPIVLVINKIDRL 136 (213)
T ss_pred cchHHHHHHHHHhCCEEEEEEECCCCCCHHHH---HHHHHHHH--cCCCEEEEEECcccC
Confidence 99888888889999999999999876655432 44444332 358999999999975
No 173
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.69 E-value=2.2e-16 Score=125.39 Aligned_cols=113 Identities=25% Similarity=0.272 Sum_probs=77.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCC--CCCcccceeeeeEEEEEECCeEEEEEEEeCCCcc--------cccccccccccC
Q 044772 24 KCVTVRDGAVGKTCLLISYTGNTF--PTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQE--------DYNRLRPLSYRG 93 (159)
Q Consensus 24 ki~vvG~~~~GKSsli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~--------~~~~~~~~~~~~ 93 (159)
+|+++|.+|||||||+++|.+... ...+.++..+.....+..++. .+.+|||||.. .+......++..
T Consensus 1 ~i~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~t~d~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ 78 (429)
T TIGR03594 1 VVAIVGRPNVGKSTLFNRLTGKRDAIVSDTPGVTRDRKYGDAEWGGR--EFILIDTGGIEEDDDGLDKQIREQAEIAIEE 78 (429)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCcceecCCCCcccCceEEEEEECCe--EEEEEECCCCCCcchhHHHHHHHHHHHHHhh
Confidence 589999999999999999998763 233333333333334445554 48999999963 233445567889
Q ss_pred CcEEEEEEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCcccccCc
Q 044772 94 ADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKDR 143 (159)
Q Consensus 94 ~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~r 143 (159)
+|++++|+|..+..+.... .+...+.+ .+.|+++|+||+|+...+
T Consensus 79 ad~vl~vvD~~~~~~~~d~---~i~~~l~~--~~~piilVvNK~D~~~~~ 123 (429)
T TIGR03594 79 ADVILFVVDGREGLTPEDE---EIAKWLRK--SGKPVILVANKIDGKKED 123 (429)
T ss_pred CCEEEEEEeCCCCCCHHHH---HHHHHHHH--hCCCEEEEEECccCCccc
Confidence 9999999999875443332 22333332 368999999999987544
No 174
>KOG4423 consensus GTP-binding protein-like, RAS superfamily [Signal transduction mechanisms]
Probab=99.69 E-value=2e-19 Score=124.62 Aligned_cols=121 Identities=30% Similarity=0.497 Sum_probs=105.5
Q ss_pred cceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeeeEE-EEEEC-CeEEEEEEEeCCCcccccccccccccCCcE
Q 044772 19 ATKFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSA-NVMVD-GRTVNLGLWDTAGQEDYNRLRPLSYRGADV 96 (159)
Q Consensus 19 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~-~~~~~-~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ 96 (159)
....+|++|+|.-|+|||+++.+.....|...|+.|++..+.. .+..+ ...+++++||+.||++|..+..-|++.+++
T Consensus 22 r~hL~k~lVig~~~vgkts~i~ryv~~nfs~~yRAtIgvdfalkVl~wdd~t~vRlqLwdIagQerfg~mtrVyykea~~ 101 (229)
T KOG4423|consen 22 REHLFKVLVIGDLGVGKTSSIKRYVHQNFSYHYRATIGVDFALKVLQWDDKTIVRLQLWDIAGQERFGNMTRVYYKEAHG 101 (229)
T ss_pred hhhhhhhheeeeccccchhHHHHHHHHHHHHHHHHHHhHHHHHHHhccChHHHHHHHHhcchhhhhhcceEEEEecCCcc
Confidence 3567899999999999999999999999999999999988844 34444 456789999999999999999999999999
Q ss_pred EEEEEeCCChhhHHhhhhhhHHHHHhhhC-----CCCCEEEEeeCccccc
Q 044772 97 FILAFSLISRPSYENISKKKWVPELRHYA-----PSVPIVLVGTKLDLRK 141 (159)
Q Consensus 97 ~i~v~d~~~~~s~~~~~~~~~~~~i~~~~-----~~~piilv~nK~Dl~~ 141 (159)
.++|||+++.-+|+... .|.+.+.... .-+|+++++||||+..
T Consensus 102 ~~iVfdvt~s~tfe~~s--kwkqdldsk~qLpng~Pv~~vllankCd~e~ 149 (229)
T KOG4423|consen 102 AFIVFDVTRSLTFEPVS--KWKQDLDSKLQLPNGTPVPCVLLANKCDQEK 149 (229)
T ss_pred eEEEEEccccccccHHH--HHHHhccCcccCCCCCcchheeccchhccCh
Confidence 99999999999999998 9999887543 2467899999999864
No 175
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=99.68 E-value=1.9e-16 Score=112.92 Aligned_cols=118 Identities=18% Similarity=0.106 Sum_probs=75.9
Q ss_pred CCcceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCcc----------ccccc
Q 044772 17 TTATKFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQE----------DYNRL 86 (159)
Q Consensus 17 ~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~----------~~~~~ 86 (159)
......++|+++|++|+|||||+++|++.++...+.++.+.+........ ...+.+||+||.. .+...
T Consensus 19 ~~~~~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~--~~~l~l~DtpG~~~~~~~~~~~~~~~~~ 96 (196)
T PRK00454 19 LPPDDGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLINFFEV--NDKLRLVDLPGYGYAKVSKEEKEKWQKL 96 (196)
T ss_pred CCCCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEEEEEec--CCeEEEeCCCCCCCcCCCchHHHHHHHH
Confidence 34557789999999999999999999987765555555443222111111 2568999999942 23333
Q ss_pred ccccccC---CcEEEEEEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCccccc
Q 044772 87 RPLSYRG---ADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRK 141 (159)
Q Consensus 87 ~~~~~~~---~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~ 141 (159)
...++.. .+++++++|..++.+.... .+...+.. .+.|+++++||+|+..
T Consensus 97 ~~~~~~~~~~~~~~~~v~d~~~~~~~~~~---~i~~~l~~--~~~~~iiv~nK~Dl~~ 149 (196)
T PRK00454 97 IEEYLRTRENLKGVVLLIDSRHPLKELDL---QMIEWLKE--YGIPVLIVLTKADKLK 149 (196)
T ss_pred HHHHHHhCccceEEEEEEecCCCCCHHHH---HHHHHHHH--cCCcEEEEEECcccCC
Confidence 3444543 4678888998765443322 22222222 3689999999999864
No 176
>PRK11058 GTPase HflX; Provisional
Probab=99.68 E-value=2.1e-16 Score=124.98 Aligned_cols=116 Identities=22% Similarity=0.139 Sum_probs=78.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCC-C-cccceeeeeEEEEEECCeEEEEEEEeCCCcccc--cccc------ccccc
Q 044772 23 IKCVTVRDGAVGKTCLLISYTGNTFPT-D-YVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDY--NRLR------PLSYR 92 (159)
Q Consensus 23 ~ki~vvG~~~~GKSsli~~l~~~~~~~-~-~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~--~~~~------~~~~~ 92 (159)
.+|+++|.+|+|||||+|+|.+.++.. + ...|... ....+...+. ..+.+|||+|.... ...+ ...+.
T Consensus 198 p~ValVG~~NaGKSSLlN~Lt~~~~~v~~~~~tTld~-~~~~i~l~~~-~~~~l~DTaG~~r~lp~~lve~f~~tl~~~~ 275 (426)
T PRK11058 198 PTVSLVGYTNAGKSTLFNRITEARVYAADQLFATLDP-TLRRIDVADV-GETVLADTVGFIRHLPHDLVAAFKATLQETR 275 (426)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCceeeccCCCCCcCC-ceEEEEeCCC-CeEEEEecCcccccCCHHHHHHHHHHHHHhh
Confidence 589999999999999999999876432 2 2223222 2233444432 24789999997332 1122 22367
Q ss_pred CCcEEEEEEeCCChhhHHhhhhhhHHHHHhhhC-CCCCEEEEeeCcccccC
Q 044772 93 GADVFILAFSLISRPSYENISKKKWVPELRHYA-PSVPIVLVGTKLDLRKD 142 (159)
Q Consensus 93 ~~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~ 142 (159)
.+|++++|+|++++.++..+. .|...+.... .+.|+++|+||+|+...
T Consensus 276 ~ADlIL~VvDaS~~~~~e~l~--~v~~iL~el~~~~~pvIiV~NKiDL~~~ 324 (426)
T PRK11058 276 QATLLLHVVDAADVRVQENIE--AVNTVLEEIDAHEIPTLLVMNKIDMLDD 324 (426)
T ss_pred cCCEEEEEEeCCCccHHHHHH--HHHHHHHHhccCCCCEEEEEEcccCCCc
Confidence 899999999999988877765 4444333332 47899999999998643
No 177
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=99.68 E-value=1.2e-16 Score=110.02 Aligned_cols=117 Identities=18% Similarity=0.222 Sum_probs=76.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCC-CCcccceeeeeEEEEEECCeEEEEEEEeCCCcccccc------cccccc--cC
Q 044772 23 IKCVTVRDGAVGKTCLLISYTGNTFP-TDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNR------LRPLSY--RG 93 (159)
Q Consensus 23 ~ki~vvG~~~~GKSsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~------~~~~~~--~~ 93 (159)
++|+++|.||||||||+|+|.+.+.. .++..++-......+..++ ..+.++|+||...+.. ....++ ..
T Consensus 1 i~ialvG~PNvGKStLfN~Ltg~~~~v~n~pG~Tv~~~~g~~~~~~--~~~~lvDlPG~ysl~~~s~ee~v~~~~l~~~~ 78 (156)
T PF02421_consen 1 IRIALVGNPNVGKSTLFNALTGAKQKVGNWPGTTVEKKEGIFKLGD--QQVELVDLPGIYSLSSKSEEERVARDYLLSEK 78 (156)
T ss_dssp -EEEEEESTTSSHHHHHHHHHTTSEEEEESTTSSSEEEEEEEEETT--EEEEEEE----SSSSSSSHHHHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCceecCCCCCCeeeeeEEEEecC--ceEEEEECCCcccCCCCCcHHHHHHHHHhhcC
Confidence 58999999999999999999988854 3333333332334555566 4589999999543322 223343 57
Q ss_pred CcEEEEEEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCcccccCcccccc
Q 044772 94 ADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKDRQFHLD 148 (159)
Q Consensus 94 ~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~r~v~~~ 148 (159)
.|++|.|.|.++.+.-. .+...+.+ -++|++++.||+|+.+.+.+..+
T Consensus 79 ~D~ii~VvDa~~l~r~l-----~l~~ql~e--~g~P~vvvlN~~D~a~~~g~~id 126 (156)
T PF02421_consen 79 PDLIIVVVDATNLERNL-----YLTLQLLE--LGIPVVVVLNKMDEAERKGIEID 126 (156)
T ss_dssp SSEEEEEEEGGGHHHHH-----HHHHHHHH--TTSSEEEEEETHHHHHHTTEEE-
T ss_pred CCEEEEECCCCCHHHHH-----HHHHHHHH--cCCCEEEEEeCHHHHHHcCCEEC
Confidence 99999999998654322 33333333 26999999999999877666543
No 178
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=99.67 E-value=2.3e-16 Score=116.21 Aligned_cols=113 Identities=19% Similarity=0.095 Sum_probs=77.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCC-C-------Cc-----cc---ceeeee-EEEEEECCeEEEEEEEeCCCccccccc
Q 044772 24 KCVTVRDGAVGKTCLLISYTGNTFP-T-------DY-----VP---TVFDNF-SANVMVDGRTVNLGLWDTAGQEDYNRL 86 (159)
Q Consensus 24 ki~vvG~~~~GKSsli~~l~~~~~~-~-------~~-----~~---t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~ 86 (159)
+|+++|+.|+|||||+++|+...-. . .. .+ ..+... .....+.....++.+||+||+..|...
T Consensus 1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~~~~~i~liDTPG~~~f~~~ 80 (237)
T cd04168 1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQWEDTKVNLIDTPGHMDFIAE 80 (237)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEECCEEEEEEeCCCccchHHH
Confidence 5899999999999999999854211 0 00 00 000011 112223334567999999999999888
Q ss_pred ccccccCCcEEEEEEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCccccc
Q 044772 87 RPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRK 141 (159)
Q Consensus 87 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~ 141 (159)
+..+++.+|++++|+|..+...... . .++..+.. .++|+++++||+|+..
T Consensus 81 ~~~~l~~aD~~IlVvd~~~g~~~~~-~--~~~~~~~~--~~~P~iivvNK~D~~~ 130 (237)
T cd04168 81 VERSLSVLDGAILVISAVEGVQAQT-R--ILWRLLRK--LNIPTIIFVNKIDRAG 130 (237)
T ss_pred HHHHHHHhCeEEEEEeCCCCCCHHH-H--HHHHHHHH--cCCCEEEEEECccccC
Confidence 8889999999999999987543322 2 45444443 3689999999999874
No 179
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=99.67 E-value=4.2e-17 Score=114.67 Aligned_cols=119 Identities=17% Similarity=0.146 Sum_probs=71.9
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCcccccccccc---cccCCcEEE
Q 044772 22 FIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRLRPL---SYRGADVFI 98 (159)
Q Consensus 22 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~---~~~~~~~~i 98 (159)
.-.|+++|++|+|||+|..+|..+...+..... +......+ -+.....+.+.|+||+.+.+..... +..++.++|
T Consensus 3 ~~~vlL~Gps~SGKTaLf~~L~~~~~~~T~tS~-e~n~~~~~-~~~~~~~~~lvD~PGH~rlr~~~~~~~~~~~~~k~II 80 (181)
T PF09439_consen 3 RPTVLLVGPSGSGKTALFSQLVNGKTVPTVTSM-ENNIAYNV-NNSKGKKLRLVDIPGHPRLRSKLLDELKYLSNAKGII 80 (181)
T ss_dssp --EEEEE-STTSSHHHHHHHHHHSS---B---S-SEEEECCG-SSTCGTCECEEEETT-HCCCHHHHHHHHHHGGEEEEE
T ss_pred CceEEEEcCCCCCHHHHHHHHhcCCcCCeeccc-cCCceEEe-ecCCCCEEEEEECCCcHHHHHHHHHhhhchhhCCEEE
Confidence 456999999999999999999998765443333 33222111 1223345899999999988874444 478899999
Q ss_pred EEEeCCC-hhhHHhhhhhhHHHHHh---hhCCCCCEEEEeeCcccccCc
Q 044772 99 LAFSLIS-RPSYENISKKKWVPELR---HYAPSVPIVLVGTKLDLRKDR 143 (159)
Q Consensus 99 ~v~d~~~-~~s~~~~~~~~~~~~i~---~~~~~~piilv~nK~Dl~~~r 143 (159)
||+|.+. +..+.+..+ .++.-+. .....+|++|++||+|+...+
T Consensus 81 fvvDSs~~~~~~~~~Ae-~Ly~iL~~~~~~~~~~piLIacNK~Dl~~A~ 128 (181)
T PF09439_consen 81 FVVDSSTDQKELRDVAE-YLYDILSDTEVQKNKPPILIACNKQDLFTAK 128 (181)
T ss_dssp EEEETTTHHHHHHHHHH-HHHHHHHHHHCCTT--EEEEEEE-TTSTT--
T ss_pred EEEeCccchhhHHHHHH-HHHHHHHhhhhccCCCCEEEEEeCccccccC
Confidence 9999873 344444443 3333222 223589999999999987544
No 180
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=99.66 E-value=1.3e-15 Score=127.65 Aligned_cols=117 Identities=18% Similarity=0.220 Sum_probs=84.1
Q ss_pred CcceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeee-EEEEEECCeEEEEEEEeCCCcccccccccccccCCcE
Q 044772 18 TATKFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNF-SANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADV 96 (159)
Q Consensus 18 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ 96 (159)
...+...|+++|+.++|||||+++|....+.....+...... ...+.+++ ..+.||||||++.|..++...+..+|+
T Consensus 286 ~~~R~pvV~ImGhvd~GKTSLl~~Lr~~~v~~~e~~GIT~~iga~~v~~~~--~~ItfiDTPGhe~F~~m~~rga~~aDi 363 (787)
T PRK05306 286 LVPRPPVVTIMGHVDHGKTSLLDAIRKTNVAAGEAGGITQHIGAYQVETNG--GKITFLDTPGHEAFTAMRARGAQVTDI 363 (787)
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHhCCccccccCceeeeccEEEEEECC--EEEEEEECCCCccchhHHHhhhhhCCE
Confidence 356788999999999999999999998777644333221111 22344444 568999999999999999888999999
Q ss_pred EEEEEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCccccc
Q 044772 97 FILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRK 141 (159)
Q Consensus 97 ~i~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~ 141 (159)
+|+|||+++...-.... .| ..+. ..++|++|++||+|+..
T Consensus 364 aILVVdAddGv~~qT~e--~i-~~a~--~~~vPiIVviNKiDl~~ 403 (787)
T PRK05306 364 VVLVVAADDGVMPQTIE--AI-NHAK--AAGVPIIVAINKIDKPG 403 (787)
T ss_pred EEEEEECCCCCCHhHHH--HH-HHHH--hcCCcEEEEEECccccc
Confidence 99999998742222111 22 1111 13689999999999965
No 181
>KOG0077 consensus Vesicle coat complex COPII, GTPase subunit SAR1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.66 E-value=1.5e-16 Score=108.42 Aligned_cols=118 Identities=19% Similarity=0.308 Sum_probs=91.9
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEEE
Q 044772 21 KFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADVFILA 100 (159)
Q Consensus 21 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v 100 (159)
+.-|++++|..|+|||||++.|..++. ..+.||.-++.. ++.+.+ +++..+|++|+......|+.|+..++++++.
T Consensus 19 K~gKllFlGLDNAGKTTLLHMLKdDrl-~qhvPTlHPTSE-~l~Ig~--m~ftt~DLGGH~qArr~wkdyf~~v~~iv~l 94 (193)
T KOG0077|consen 19 KFGKLLFLGLDNAGKTTLLHMLKDDRL-GQHVPTLHPTSE-ELSIGG--MTFTTFDLGGHLQARRVWKDYFPQVDAIVYL 94 (193)
T ss_pred cCceEEEEeecCCchhhHHHHHccccc-cccCCCcCCChH-HheecC--ceEEEEccccHHHHHHHHHHHHhhhceeEee
Confidence 456899999999999999999987775 344666544322 345555 5699999999999999999999999999999
Q ss_pred EeCCChhhHHhhhhhhHHHHHh-hhCCCCCEEEEeeCcccccCc
Q 044772 101 FSLISRPSYENISKKKWVPELR-HYAPSVPIVLVGTKLDLRKDR 143 (159)
Q Consensus 101 ~d~~~~~s~~~~~~~~~~~~i~-~~~~~~piilv~nK~Dl~~~r 143 (159)
+|+.|.+.|.+... .+-..+. +....+|+++++||+|.+..-
T Consensus 95 vda~d~er~~es~~-eld~ll~~e~la~vp~lilgnKId~p~a~ 137 (193)
T KOG0077|consen 95 VDAYDQERFAESKK-ELDALLSDESLATVPFLILGNKIDIPYAA 137 (193)
T ss_pred eehhhHHHhHHHHH-HHHHHHhHHHHhcCcceeecccccCCCcc
Confidence 99999999998874 2211111 112479999999999987643
No 182
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=99.66 E-value=6e-16 Score=110.47 Aligned_cols=114 Identities=18% Similarity=0.113 Sum_probs=71.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcC----CCCCCc-----ccceeeeeEE-EEE----------ECCeEEEEEEEeCCCccc
Q 044772 23 IKCVTVRDGAVGKTCLLISYTGN----TFPTDY-----VPTVFDNFSA-NVM----------VDGRTVNLGLWDTAGQED 82 (159)
Q Consensus 23 ~ki~vvG~~~~GKSsli~~l~~~----~~~~~~-----~~t~~~~~~~-~~~----------~~~~~~~~~i~D~~g~~~ 82 (159)
++|+++|++++|||||+++|+.. .+...+ ..|....+.. .+. .++..+.+.+||+||+..
T Consensus 1 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~ 80 (192)
T cd01889 1 VNVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHAS 80 (192)
T ss_pred CeEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcHH
Confidence 58999999999999999999862 121111 1222322221 211 123356799999999865
Q ss_pred ccccccccccCCcEEEEEEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCccccc
Q 044772 83 YNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRK 141 (159)
Q Consensus 83 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~ 141 (159)
+..........+|++++|+|+.+........ .+.. ... .+.|+++++||+|+..
T Consensus 81 ~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~--~~~~--~~~-~~~~~iiv~NK~Dl~~ 134 (192)
T cd01889 81 LIRTIIGGAQIIDLMLLVVDATKGIQTQTAE--CLVI--GEI-LCKKLIVVLNKIDLIP 134 (192)
T ss_pred HHHHHHHHHhhCCEEEEEEECCCCccHHHHH--HHHH--HHH-cCCCEEEEEECcccCC
Confidence 5433334456789999999998754443332 2211 111 2579999999999863
No 183
>CHL00189 infB translation initiation factor 2; Provisional
Probab=99.66 E-value=6.1e-16 Score=128.62 Aligned_cols=118 Identities=17% Similarity=0.200 Sum_probs=84.7
Q ss_pred cceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceee---eeEEEEEECCeEEEEEEEeCCCcccccccccccccCCc
Q 044772 19 ATKFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFD---NFSANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGAD 95 (159)
Q Consensus 19 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~---~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~ 95 (159)
..+..+|+++|+.++|||||+++|....+.....+.... .+......++....+.+|||||++.|..++..++..+|
T Consensus 241 ~~r~p~V~IvGhvdvGKTSLld~L~~~~~~~~e~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGhe~F~~mr~rg~~~aD 320 (742)
T CHL00189 241 INRPPIVTILGHVDHGKTTLLDKIRKTQIAQKEAGGITQKIGAYEVEFEYKDENQKIVFLDTPGHEAFSSMRSRGANVTD 320 (742)
T ss_pred cccCCEEEEECCCCCCHHHHHHHHHhccCccccCCccccccceEEEEEEecCCceEEEEEECCcHHHHHHHHHHHHHHCC
Confidence 457789999999999999999999987765433322211 12222333345578999999999999999989999999
Q ss_pred EEEEEEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCccccc
Q 044772 96 VFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRK 141 (159)
Q Consensus 96 ~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~ 141 (159)
++|+|+|+++........ .| ..+. ..++|++|++||+|+..
T Consensus 321 iaILVVDA~dGv~~QT~E--~I-~~~k--~~~iPiIVViNKiDl~~ 361 (742)
T CHL00189 321 IAILIIAADDGVKPQTIE--AI-NYIQ--AANVPIIVAINKIDKAN 361 (742)
T ss_pred EEEEEEECcCCCChhhHH--HH-HHHH--hcCceEEEEEECCCccc
Confidence 999999998743322221 11 1121 13689999999999975
No 184
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=99.66 E-value=3.1e-15 Score=118.02 Aligned_cols=114 Identities=23% Similarity=0.246 Sum_probs=77.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCC-CCcccc-eeeeeEEEEEECCeEEEEEEEeCCCccc----cccccccc---ccCC
Q 044772 24 KCVTVRDGAVGKTCLLISYTGNTFP-TDYVPT-VFDNFSANVMVDGRTVNLGLWDTAGQED----YNRLRPLS---YRGA 94 (159)
Q Consensus 24 ki~vvG~~~~GKSsli~~l~~~~~~-~~~~~t-~~~~~~~~~~~~~~~~~~~i~D~~g~~~----~~~~~~~~---~~~~ 94 (159)
.|.+||.|+||||||+++|.+.+.. .+|..| ...... .+.+++ ...+.+||+||.-. ...+...+ +.++
T Consensus 160 dVglVG~pNaGKSTLLn~Lt~ak~kIa~ypfTTl~PnlG-~v~~~~-~~~~~laD~PGliega~~~~gLg~~fLrhier~ 237 (424)
T PRK12297 160 DVGLVGFPNVGKSTLLSVVSNAKPKIANYHFTTLVPNLG-VVETDD-GRSFVMADIPGLIEGASEGVGLGHQFLRHIERT 237 (424)
T ss_pred cEEEEcCCCCCHHHHHHHHHcCCCccccCCcceeceEEE-EEEEeC-CceEEEEECCCCcccccccchHHHHHHHHHhhC
Confidence 7999999999999999999976632 233332 222221 233331 24589999999632 11222233 5569
Q ss_pred cEEEEEEeCCCh---hhHHhhhhhhHHHHHhhhCC---CCCEEEEeeCccccc
Q 044772 95 DVFILAFSLISR---PSYENISKKKWVPELRHYAP---SVPIVLVGTKLDLRK 141 (159)
Q Consensus 95 ~~~i~v~d~~~~---~s~~~~~~~~~~~~i~~~~~---~~piilv~nK~Dl~~ 141 (159)
+++|+|+|+++. +.+.... .|..++..+.+ +.|++||+||+|+.+
T Consensus 238 ~llI~VID~s~~~~~dp~e~~~--~i~~EL~~y~~~L~~kP~IVV~NK~DL~~ 288 (424)
T PRK12297 238 RVIVHVIDMSGSEGRDPIEDYE--KINKELKLYNPRLLERPQIVVANKMDLPE 288 (424)
T ss_pred CEEEEEEeCCccccCChHHHHH--HHHHHHhhhchhccCCcEEEEEeCCCCcC
Confidence 999999999864 4566665 78777777653 789999999999854
No 185
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=99.65 E-value=3.8e-15 Score=112.01 Aligned_cols=116 Identities=16% Similarity=0.153 Sum_probs=74.6
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCCCCC----------cccceeee-eEEEEEECCeEEEEEEEeCCCcccccc----
Q 044772 21 KFIKCVTVRDGAVGKTCLLISYTGNTFPTD----------YVPTVFDN-FSANVMVDGRTVNLGLWDTAGQEDYNR---- 85 (159)
Q Consensus 21 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~----------~~~t~~~~-~~~~~~~~~~~~~~~i~D~~g~~~~~~---- 85 (159)
..++|+++|.+|+|||||+++|++..+... ..+|.... +...+..++..+.+.+|||||...+..
T Consensus 3 ~~f~I~vvG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~~~~T~~i~~~~~~i~~~g~~~~l~iiDTpGfgd~~~~~~~ 82 (276)
T cd01850 3 FQFNIMVVGESGLGKSTFINTLFNTKLIPSDYPPDPAEEHIDKTVEIKSSKAEIEENGVKLKLTVIDTPGFGDNINNSDC 82 (276)
T ss_pred cEEEEEEEcCCCCCHHHHHHHHHcCCCccccCCCCccccccCCceEEEEEEEEEEECCEEEEEEEEecCCccccccchhh
Confidence 568999999999999999999998886543 23333222 233455577788999999999433211
Q ss_pred ----------------------cccccccC--CcEEEEEEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCccccc
Q 044772 86 ----------------------LRPLSYRG--ADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRK 141 (159)
Q Consensus 86 ----------------------~~~~~~~~--~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~ 141 (159)
.+...+.+ +|+++++++.+. ..+...+. ..+..+. .++|+++|+||+|+..
T Consensus 83 ~~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~-~~l~~~D~-~~lk~l~---~~v~vi~VinK~D~l~ 157 (276)
T cd01850 83 WKPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTG-HGLKPLDI-EFMKRLS---KRVNIIPVIAKADTLT 157 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCC-CCCCHHHH-HHHHHHh---ccCCEEEEEECCCcCC
Confidence 11134444 555666666543 12222221 4444444 3689999999999844
No 186
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=99.65 E-value=1.2e-15 Score=114.26 Aligned_cols=116 Identities=17% Similarity=0.097 Sum_probs=77.6
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCC-CCCc---------ccce----------eee-eEEEEEECCeEEEEEEEeCCCc
Q 044772 22 FIKCVTVRDGAVGKTCLLISYTGNTF-PTDY---------VPTV----------FDN-FSANVMVDGRTVNLGLWDTAGQ 80 (159)
Q Consensus 22 ~~ki~vvG~~~~GKSsli~~l~~~~~-~~~~---------~~t~----------~~~-~~~~~~~~~~~~~~~i~D~~g~ 80 (159)
..+|+++|++|+|||||+++|+...- .... ..+. +.. ......+....+++++|||||+
T Consensus 2 ~Rni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~~~~~i~liDTPG~ 81 (267)
T cd04169 2 RRTFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEYRDCVINLLDTPGH 81 (267)
T ss_pred ccEEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEeeCCEEEEEEECCCc
Confidence 36899999999999999999984321 1110 0000 000 1122234445578999999999
Q ss_pred ccccccccccccCCcEEEEEEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCcccccC
Q 044772 81 EDYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKD 142 (159)
Q Consensus 81 ~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~ 142 (159)
..|......+++.+|++|+|+|.++..... .. .++..... .++|+++++||+|+...
T Consensus 82 ~df~~~~~~~l~~aD~~IlVvda~~g~~~~-~~--~i~~~~~~--~~~P~iivvNK~D~~~a 138 (267)
T cd04169 82 EDFSEDTYRTLTAVDSAVMVIDAAKGVEPQ-TR--KLFEVCRL--RGIPIITFINKLDREGR 138 (267)
T ss_pred hHHHHHHHHHHHHCCEEEEEEECCCCccHH-HH--HHHHHHHh--cCCCEEEEEECCccCCC
Confidence 988876777889999999999998653222 11 33333322 36899999999998654
No 187
>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1. RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.
Probab=99.65 E-value=5.1e-16 Score=113.48 Aligned_cols=116 Identities=22% Similarity=0.330 Sum_probs=76.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeeeE-EEEEE-CCeEEEEEEEeCCCcccccc-----cccccccCCcE
Q 044772 24 KCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFS-ANVMV-DGRTVNLGLWDTAGQEDYNR-----LRPLSYRGADV 96 (159)
Q Consensus 24 ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~-~~~~~~~~i~D~~g~~~~~~-----~~~~~~~~~~~ 96 (159)
||+++|++++||||+.+-+..+..+.. ....+.+.. ....+ ....+.+++||+||+..+.. .....++++.+
T Consensus 1 KiLLmG~~~SGKTSi~~vIF~~~~p~d-T~~L~~T~~ve~~~v~~~~~~~l~iwD~pGq~~~~~~~~~~~~~~if~~v~~ 79 (232)
T PF04670_consen 1 KILLMGPRRSGKTSIRSVIFHKYSPRD-TLRLEPTIDVEKSHVRFLSFLPLNIWDCPGQDDFMENYFNSQREEIFSNVGV 79 (232)
T ss_dssp EEEEEESTTSSHHHHHHHHHS---GGG-GGG-----SEEEEEEECTTSCEEEEEEE-SSCSTTHTTHTCCHHHHHCTESE
T ss_pred CEEEEcCCCCChhhHHHHHHcCCCchh-ccccCCcCCceEEEEecCCCcEEEEEEcCCccccccccccccHHHHHhccCE
Confidence 799999999999999888876543322 222222221 11122 23345799999999975543 34667899999
Q ss_pred EEEEEeCCChhhHHhhhh-hhHHHHHhhhCCCCCEEEEeeCcccc
Q 044772 97 FILAFSLISRPSYENISK-KKWVPELRHYAPSVPIVLVGTKLDLR 140 (159)
Q Consensus 97 ~i~v~d~~~~~s~~~~~~-~~~~~~i~~~~~~~piilv~nK~Dl~ 140 (159)
+|+|+|+.+.+-.+.+.. ..+++.+.++++++.+.|+.||+|+.
T Consensus 80 LIyV~D~qs~~~~~~l~~~~~~i~~l~~~sp~~~v~vfiHK~D~l 124 (232)
T PF04670_consen 80 LIYVFDAQSDDYDEDLAYLSDCIEALRQYSPNIKVFVFIHKMDLL 124 (232)
T ss_dssp EEEEEETT-STCHHHHHHHHHHHHHHHHHSTT-EEEEEEE-CCCS
T ss_pred EEEEEEcccccHHHHHHHHHHHHHHHHHhCCCCeEEEEEeecccC
Confidence 999999996554444432 37788888889999999999999984
No 188
>COG2229 Predicted GTPase [General function prediction only]
Probab=99.65 E-value=2e-15 Score=104.73 Aligned_cols=123 Identities=20% Similarity=0.211 Sum_probs=88.4
Q ss_pred CCcceeeEEEEEcCCCCCHHHHHHHHhcCCCC--------CCccc----ceeeeeEEEEEECCeEEEEEEEeCCCccccc
Q 044772 17 TTATKFIKCVTVRDGAVGKTCLLISYTGNTFP--------TDYVP----TVFDNFSANVMVDGRTVNLGLWDTAGQEDYN 84 (159)
Q Consensus 17 ~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~--------~~~~~----t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~ 84 (159)
.......||+++|+-++||||++.++...... ..+.. |....|. .+..++ ...+.++++|||++|.
T Consensus 5 ~~k~~~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~~~s~k~kr~tTva~D~g-~~~~~~-~~~v~LfgtPGq~RF~ 82 (187)
T COG2229 5 ANKMIETKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFG-SIELDE-DTGVHLFGTPGQERFK 82 (187)
T ss_pred cccccceeEEEEcccccchhhHHHHhhccccceeeccccccccccccceeEeeccc-ceEEcC-cceEEEecCCCcHHHH
Confidence 34567789999999999999999999866531 11111 1111111 222232 2458999999999999
Q ss_pred ccccccccCCcEEEEEEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCcccccCccc
Q 044772 85 RLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKDRQF 145 (159)
Q Consensus 85 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~r~v 145 (159)
-+|..+++.+.++|+++|.+.+..|. .. ..+..+.... .+|++|++||.||...+..
T Consensus 83 fm~~~l~~ga~gaivlVDss~~~~~~-a~--~ii~f~~~~~-~ip~vVa~NK~DL~~a~pp 139 (187)
T COG2229 83 FMWEILSRGAVGAIVLVDSSRPITFH-AE--EIIDFLTSRN-PIPVVVAINKQDLFDALPP 139 (187)
T ss_pred HHHHHHhCCcceEEEEEecCCCcchH-HH--HHHHHHhhcc-CCCEEEEeeccccCCCCCH
Confidence 99999999999999999999999882 22 3343333322 2999999999999876544
No 189
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=99.65 E-value=9.6e-16 Score=111.75 Aligned_cols=120 Identities=15% Similarity=0.096 Sum_probs=80.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCC--CCcccc------e------eee---eEEEEEEC--------CeEEEEEEEeCC
Q 044772 24 KCVTVRDGAVGKTCLLISYTGNTFP--TDYVPT------V------FDN---FSANVMVD--------GRTVNLGLWDTA 78 (159)
Q Consensus 24 ki~vvG~~~~GKSsli~~l~~~~~~--~~~~~t------~------~~~---~~~~~~~~--------~~~~~~~i~D~~ 78 (159)
+|+++|+.++|||||+.+|+...-. .....+ . +.. ....+... +..+.+++||+|
T Consensus 2 NvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i~iiDTP 81 (222)
T cd01885 2 NICIIAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLIDSP 81 (222)
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCCccccCCceeeccCCHHHHHhccccccceEEEEEecCcccccCCCceEEEEECCC
Confidence 7999999999999999999854311 100000 0 000 00011222 346889999999
Q ss_pred CcccccccccccccCCcEEEEEEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCcccc-cCcccccc
Q 044772 79 GQEDYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLR-KDRQFHLD 148 (159)
Q Consensus 79 g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~-~~r~v~~~ 148 (159)
|+..|......++..+|++++|||+.+....+.. ..+..... .++|++|++||+|+. .+++++.+
T Consensus 82 G~~~f~~~~~~~l~~aD~~ilVvD~~~g~~~~t~---~~l~~~~~--~~~p~ilviNKiD~~~~e~~~~~~ 147 (222)
T cd01885 82 GHVDFSSEVTAALRLCDGALVVVDAVEGVCVQTE---TVLRQALK--ERVKPVLVINKIDRLILELKLSPE 147 (222)
T ss_pred CccccHHHHHHHHHhcCeeEEEEECCCCCCHHHH---HHHHHHHH--cCCCEEEEEECCCcchhhhcCCHH
Confidence 9999998888999999999999999976555433 22222222 368999999999976 34444433
No 190
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.65 E-value=1.1e-15 Score=127.92 Aligned_cols=114 Identities=25% Similarity=0.267 Sum_probs=82.0
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCC--CCCcccceeeeeEEEEEECCeEEEEEEEeCCCccc----------ccccc-
Q 044772 21 KFIKCVTVRDGAVGKTCLLISYTGNTF--PTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQED----------YNRLR- 87 (159)
Q Consensus 21 ~~~ki~vvG~~~~GKSsli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~----------~~~~~- 87 (159)
..+||+++|.+|||||||+++|++.+. ...+.+|..+.+...+.+++.. +.+|||+|... +..+.
T Consensus 449 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~v~~~~gtT~d~~~~~~~~~~~~--~~liDTaG~~~~~~~~~~~e~~~~~r~ 526 (712)
T PRK09518 449 GLRRVALVGRPNVGKSSLLNQLTHEERAVVNDLAGTTRDPVDEIVEIDGED--WLFIDTAGIKRRQHKLTGAEYYSSLRT 526 (712)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCccccccCCCCCCCcCcceeEEEECCCE--EEEEECCCcccCcccchhHHHHHHHHH
Confidence 458999999999999999999998874 3444555544444455566654 66999999532 11111
Q ss_pred cccccCCcEEEEEEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCccccc
Q 044772 88 PLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRK 141 (159)
Q Consensus 88 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~ 141 (159)
..+++.+|++++|+|+++..++.... ++..+.. .+.|++||+||+|+.+
T Consensus 527 ~~~i~~advvilViDat~~~s~~~~~---i~~~~~~--~~~piIiV~NK~DL~~ 575 (712)
T PRK09518 527 QAAIERSELALFLFDASQPISEQDLK---VMSMAVD--AGRALVLVFNKWDLMD 575 (712)
T ss_pred HHHhhcCCEEEEEEECCCCCCHHHHH---HHHHHHH--cCCCEEEEEEchhcCC
Confidence 23468899999999999887777653 3444433 3689999999999964
No 191
>PRK00089 era GTPase Era; Reviewed
Probab=99.64 E-value=5e-16 Score=117.67 Aligned_cols=115 Identities=23% Similarity=0.223 Sum_probs=74.1
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCCCC--CcccceeeeeEEEEEECCeEEEEEEEeCCCcccccc--------ccccc
Q 044772 21 KFIKCVTVRDGAVGKTCLLISYTGNTFPT--DYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNR--------LRPLS 90 (159)
Q Consensus 21 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~--------~~~~~ 90 (159)
+.-.|+++|++|||||||+|+|++.++.. ....|...........+ ..++.+|||||...... .....
T Consensus 4 ~~g~V~iiG~pn~GKSTLin~L~g~~~~~vs~~~~tt~~~i~~i~~~~--~~qi~~iDTPG~~~~~~~l~~~~~~~~~~~ 81 (292)
T PRK00089 4 KSGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRHRIRGIVTED--DAQIIFVDTPGIHKPKRALNRAMNKAAWSS 81 (292)
T ss_pred eeEEEEEECCCCCCHHHHHHHHhCCceeecCCCCCcccccEEEEEEcC--CceEEEEECCCCCCchhHHHHHHHHHHHHH
Confidence 45579999999999999999999887532 21222222222112222 26799999999643321 22335
Q ss_pred ccCCcEEEEEEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCcccccC
Q 044772 91 YRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKD 142 (159)
Q Consensus 91 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~ 142 (159)
+.++|++++|+|+++. +..... .++..+.. .+.|+++|+||+|+...
T Consensus 82 ~~~~D~il~vvd~~~~--~~~~~~-~i~~~l~~--~~~pvilVlNKiDl~~~ 128 (292)
T PRK00089 82 LKDVDLVLFVVDADEK--IGPGDE-FILEKLKK--VKTPVILVLNKIDLVKD 128 (292)
T ss_pred HhcCCEEEEEEeCCCC--CChhHH-HHHHHHhh--cCCCEEEEEECCcCCCC
Confidence 6789999999999873 222221 33333332 36899999999999743
No 192
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.64 E-value=2.7e-15 Score=125.65 Aligned_cols=118 Identities=21% Similarity=0.199 Sum_probs=78.5
Q ss_pred CcceeeEEEEEcCCCCCHHHHHHHHhcCCCC--CCcccceeeeeEEEEEECCeEEEEEEEeCCCccc--------ccccc
Q 044772 18 TATKFIKCVTVRDGAVGKTCLLISYTGNTFP--TDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQED--------YNRLR 87 (159)
Q Consensus 18 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~--------~~~~~ 87 (159)
.+....+|+++|.++||||||+++|++.... .....+..+........++ ..+.+|||+|.+. +....
T Consensus 271 ~~~~~~~V~IvG~~nvGKSSL~n~l~~~~~~iv~~~pGvT~d~~~~~~~~~~--~~~~liDT~G~~~~~~~~~~~~~~~~ 348 (712)
T PRK09518 271 GPKAVGVVAIVGRPNVGKSTLVNRILGRREAVVEDTPGVTRDRVSYDAEWAG--TDFKLVDTGGWEADVEGIDSAIASQA 348 (712)
T ss_pred ccccCcEEEEECCCCCCHHHHHHHHhCCCceeecCCCCeeEEEEEEEEEECC--EEEEEEeCCCcCCCCccHHHHHHHHH
Confidence 3445678999999999999999999987642 2222222221122233344 4588999999753 22233
Q ss_pred cccccCCcEEEEEEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCcccccC
Q 044772 88 PLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKD 142 (159)
Q Consensus 88 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~ 142 (159)
..++..+|++|+|+|+.+. +..... .|...+.. .+.|+++|+||+|+.+.
T Consensus 349 ~~~~~~aD~iL~VvDa~~~--~~~~d~-~i~~~Lr~--~~~pvIlV~NK~D~~~~ 398 (712)
T PRK09518 349 QIAVSLADAVVFVVDGQVG--LTSTDE-RIVRMLRR--AGKPVVLAVNKIDDQAS 398 (712)
T ss_pred HHHHHhCCEEEEEEECCCC--CCHHHH-HHHHHHHh--cCCCEEEEEECcccccc
Confidence 4567899999999999853 333332 45555543 47899999999998653
No 193
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=99.63 E-value=1.6e-15 Score=121.30 Aligned_cols=118 Identities=18% Similarity=0.143 Sum_probs=76.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCC-CCcccceeeeeEEEEEECCeEEEEEEEeCCCccc----ccc---cccccccCC
Q 044772 23 IKCVTVRDGAVGKTCLLISYTGNTFP-TDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQED----YNR---LRPLSYRGA 94 (159)
Q Consensus 23 ~ki~vvG~~~~GKSsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~----~~~---~~~~~~~~~ 94 (159)
.+|+|||.||||||||+++|.+.+.. .+|..|+-......+..++ ..+.+||+||.-. ... .....+.++
T Consensus 160 adV~LVG~PNAGKSTLln~Ls~akpkIadypfTTl~P~lGvv~~~~--~~f~laDtPGliegas~g~gLg~~fLrhiera 237 (500)
T PRK12296 160 ADVGLVGFPSAGKSSLISALSAAKPKIADYPFTTLVPNLGVVQAGD--TRFTVADVPGLIPGASEGKGLGLDFLRHIERC 237 (500)
T ss_pred ceEEEEEcCCCCHHHHHHHHhcCCccccccCcccccceEEEEEECC--eEEEEEECCCCccccchhhHHHHHHHHHHHhc
Confidence 37999999999999999999976532 2333332221222334444 4689999999521 111 112346789
Q ss_pred cEEEEEEeCCCh----hhHHhhhhhhHHHHHhhhC------------CCCCEEEEeeCcccccCcc
Q 044772 95 DVFILAFSLISR----PSYENISKKKWVPELRHYA------------PSVPIVLVGTKLDLRKDRQ 144 (159)
Q Consensus 95 ~~~i~v~d~~~~----~s~~~~~~~~~~~~i~~~~------------~~~piilv~nK~Dl~~~r~ 144 (159)
+++|+|+|+++. +.+..+. .|..++..+. .+.|++||+||+|+.+.+.
T Consensus 238 dvLv~VVD~s~~e~~rdp~~d~~--~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~da~e 301 (500)
T PRK12296 238 AVLVHVVDCATLEPGRDPLSDID--ALEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDVPDARE 301 (500)
T ss_pred CEEEEEECCcccccccCchhhHH--HHHHHHHHhhhcccccchhhhhcCCCEEEEEECccchhhHH
Confidence 999999999853 2344443 4444554432 3689999999999976543
No 194
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=99.63 E-value=1.8e-15 Score=108.60 Aligned_cols=112 Identities=15% Similarity=0.174 Sum_probs=70.1
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceee-eeEE-EEEEC-CeEEEEEEEeCCCcccccccccc-----cccC
Q 044772 22 FIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFD-NFSA-NVMVD-GRTVNLGLWDTAGQEDYNRLRPL-----SYRG 93 (159)
Q Consensus 22 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~-~~~~-~~~~~-~~~~~~~i~D~~g~~~~~~~~~~-----~~~~ 93 (159)
.+||+++|++|+|||||+|.|.+.........+.+. .... ...+. .....+.+||++|.......... .+..
T Consensus 1 ~~kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~l~~~~~~~ 80 (197)
T cd04104 1 PLNIAVTGESGAGKSSFINALRGVGHEEEGAAPTGVVETTMKRTPYPHPKFPNVTLWDLPGIGSTAFPPDDYLEEMKFSE 80 (197)
T ss_pred CeEEEEECCCCCCHHHHHHHHhccCCCCCCccccCccccccCceeeecCCCCCceEEeCCCCCcccCCHHHHHHHhCccC
Confidence 378999999999999999999986543321111111 0110 00111 11235899999997543222222 3567
Q ss_pred CcEEEEEEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCcccc
Q 044772 94 ADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLR 140 (159)
Q Consensus 94 ~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~ 140 (159)
+|.++++.+ ..|...+. .|++.+... +.|+++|+||+|+-
T Consensus 81 ~d~~l~v~~----~~~~~~d~-~~~~~l~~~--~~~~ilV~nK~D~~ 120 (197)
T cd04104 81 YDFFIIISS----TRFSSNDV-KLAKAIQCM--GKKFYFVRTKVDRD 120 (197)
T ss_pred cCEEEEEeC----CCCCHHHH-HHHHHHHHh--CCCEEEEEecccch
Confidence 888888733 34555554 677766664 57999999999983
No 195
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=99.63 E-value=8.3e-16 Score=106.69 Aligned_cols=99 Identities=20% Similarity=0.127 Sum_probs=66.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCcccccc----cccccccCCcEEEE
Q 044772 24 KCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNR----LRPLSYRGADVFIL 99 (159)
Q Consensus 24 ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~----~~~~~~~~~~~~i~ 99 (159)
+|+++|.+|+|||||+++|.+.... ...+.. +.++.. .+||+||...... .....+..+|++++
T Consensus 3 ~i~~iG~~~~GKstl~~~l~~~~~~--~~~~~~------v~~~~~----~~iDtpG~~~~~~~~~~~~~~~~~~ad~il~ 70 (158)
T PRK15467 3 RIAFVGAVGAGKTTLFNALQGNYTL--ARKTQA------VEFNDK----GDIDTPGEYFSHPRWYHALITTLQDVDMLIY 70 (158)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCcc--CccceE------EEECCC----CcccCCccccCCHHHHHHHHHHHhcCCEEEE
Confidence 7999999999999999998754311 112222 122222 2699999732221 11234689999999
Q ss_pred EEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCccccc
Q 044772 100 AFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRK 141 (159)
Q Consensus 100 v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~ 141 (159)
|+|+++.+++. . .|+..+ ..+.|+++++||+|+..
T Consensus 71 v~d~~~~~s~~--~--~~~~~~---~~~~~ii~v~nK~Dl~~ 105 (158)
T PRK15467 71 VHGANDPESRL--P--AGLLDI---GVSKRQIAVISKTDMPD 105 (158)
T ss_pred EEeCCCccccc--C--HHHHhc---cCCCCeEEEEEccccCc
Confidence 99999887662 2 454443 23679999999999965
No 196
>PRK10218 GTP-binding protein; Provisional
Probab=99.63 E-value=3.7e-15 Score=122.23 Aligned_cols=118 Identities=16% Similarity=0.111 Sum_probs=83.8
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhc--CCCCCCcc------------cceeeee-EEEEEECCeEEEEEEEeCCCcccccc
Q 044772 21 KFIKCVTVRDGAVGKTCLLISYTG--NTFPTDYV------------PTVFDNF-SANVMVDGRTVNLGLWDTAGQEDYNR 85 (159)
Q Consensus 21 ~~~ki~vvG~~~~GKSsli~~l~~--~~~~~~~~------------~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~ 85 (159)
...+|+++|+.++|||||+.+|+. +.+...+. .+.+... .....+....+++++||+||+..|..
T Consensus 4 ~iRnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~~~~~inliDTPG~~df~~ 83 (607)
T PRK10218 4 KLRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKWNDYRINIVDTPGHADFGG 83 (607)
T ss_pred CceEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEecCCEEEEEEECCCcchhHH
Confidence 467999999999999999999996 33432211 1112222 23334455567899999999999999
Q ss_pred cccccccCCcEEEEEEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCcccccCc
Q 044772 86 LRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKDR 143 (159)
Q Consensus 86 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~r 143 (159)
.+..+++.+|++|+|+|+.+....+.. .++..+.. .++|++++.||+|+...+
T Consensus 84 ~v~~~l~~aDg~ILVVDa~~G~~~qt~---~~l~~a~~--~gip~IVviNKiD~~~a~ 136 (607)
T PRK10218 84 EVERVMSMVDSVLLVVDAFDGPMPQTR---FVTKKAFA--YGLKPIVVINKVDRPGAR 136 (607)
T ss_pred HHHHHHHhCCEEEEEEecccCccHHHH---HHHHHHHH--cCCCEEEEEECcCCCCCc
Confidence 999999999999999999865333222 22222222 368999999999987543
No 197
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=99.63 E-value=2.8e-15 Score=122.85 Aligned_cols=112 Identities=21% Similarity=0.224 Sum_probs=78.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCC---CCCCcccceeeee-EEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEE
Q 044772 23 IKCVTVRDGAVGKTCLLISYTGNT---FPTDYVPTVFDNF-SANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADVFI 98 (159)
Q Consensus 23 ~ki~vvG~~~~GKSsli~~l~~~~---~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i 98 (159)
+.|+++|+.++|||||+++|.+.. +...+.++..... ...+..++ ..+.+||+||++.|......++.++|+++
T Consensus 1 ~~I~iiG~~d~GKTTLi~aLtg~~~d~~~eE~~rGiTid~~~~~~~~~~--~~v~~iDtPGhe~f~~~~~~g~~~aD~aI 78 (581)
T TIGR00475 1 MIIATAGHVDHGKTTLLKALTGIAADRLPEEKKRGMTIDLGFAYFPLPD--YRLGFIDVPGHEKFISNAIAGGGGIDAAL 78 (581)
T ss_pred CEEEEECCCCCCHHHHHHHHhCccCcCChhHhcCCceEEeEEEEEEeCC--EEEEEEECCCHHHHHHHHHhhhccCCEEE
Confidence 368999999999999999998633 3222222222212 22334444 67999999999999888788889999999
Q ss_pred EEEeCCCh---hhHHhhhhhhHHHHHhhhCCCCC-EEEEeeCcccccCcc
Q 044772 99 LAFSLISR---PSYENISKKKWVPELRHYAPSVP-IVLVGTKLDLRKDRQ 144 (159)
Q Consensus 99 ~v~d~~~~---~s~~~~~~~~~~~~i~~~~~~~p-iilv~nK~Dl~~~r~ 144 (159)
+|+|+++. +++..+ .++.. .++| +++|+||+|+.+...
T Consensus 79 LVVDa~~G~~~qT~ehl---~il~~-----lgi~~iIVVlNK~Dlv~~~~ 120 (581)
T TIGR00475 79 LVVDADEGVMTQTGEHL---AVLDL-----LGIPHTIVVITKADRVNEEE 120 (581)
T ss_pred EEEECCCCCcHHHHHHH---HHHHH-----cCCCeEEEEEECCCCCCHHH
Confidence 99999973 343332 22221 2577 999999999976543
No 198
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=99.62 E-value=2.4e-15 Score=122.91 Aligned_cols=113 Identities=19% Similarity=0.170 Sum_probs=78.6
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccc----ceeeeeEEEEEEC-------------CeEEEEEEEeCCCcccc
Q 044772 21 KFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVP----TVFDNFSANVMVD-------------GRTVNLGLWDTAGQEDY 83 (159)
Q Consensus 21 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~----t~~~~~~~~~~~~-------------~~~~~~~i~D~~g~~~~ 83 (159)
+..-|+++|++++|||||+++|.+..+.....+ +.+..+....... .....+.+|||||++.|
T Consensus 3 r~piV~IiG~~d~GKTSLln~l~~~~v~~~e~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG~e~f 82 (590)
T TIGR00491 3 RSPIVSVLGHVDHGKTTLLDKIRGSAVAKREAGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTPGHEAF 82 (590)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccccccccCCceecccCeeEeeeccccccccccccccccccccCcEEEEECCCcHhH
Confidence 345699999999999999999998877543222 2222221100000 00123889999999999
Q ss_pred cccccccccCCcEEEEEEeCCC---hhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCccccc
Q 044772 84 NRLRPLSYRGADVFILAFSLIS---RPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRK 141 (159)
Q Consensus 84 ~~~~~~~~~~~~~~i~v~d~~~---~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~ 141 (159)
..++..++..+|++++|||+++ +.++..+ .++. . .++|+++++||+|+..
T Consensus 83 ~~l~~~~~~~aD~~IlVvD~~~g~~~qt~e~i---~~l~---~--~~vpiIVv~NK~Dl~~ 135 (590)
T TIGR00491 83 TNLRKRGGALADLAILIVDINEGFKPQTQEAL---NILR---M--YKTPFVVAANKIDRIP 135 (590)
T ss_pred HHHHHHHHhhCCEEEEEEECCcCCCHhHHHHH---HHHH---H--cCCCEEEEEECCCccc
Confidence 9988889999999999999987 4444433 2221 1 3689999999999964
No 199
>PRK05433 GTP-binding protein LepA; Provisional
Probab=99.62 E-value=3.3e-15 Score=122.75 Aligned_cols=118 Identities=18% Similarity=0.148 Sum_probs=83.8
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCC--CCC-----Ccccc------eeeee-EEE--EEE---CCeEEEEEEEeCCCc
Q 044772 20 TKFIKCVTVRDGAVGKTCLLISYTGNT--FPT-----DYVPT------VFDNF-SAN--VMV---DGRTVNLGLWDTAGQ 80 (159)
Q Consensus 20 ~~~~ki~vvG~~~~GKSsli~~l~~~~--~~~-----~~~~t------~~~~~-~~~--~~~---~~~~~~~~i~D~~g~ 80 (159)
....+++++|+.++|||||+.+|+... +.. .+..+ .+.+. ... +.+ ++..+.+++|||||+
T Consensus 5 ~~iRNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiDTPGh 84 (600)
T PRK05433 5 KNIRNFSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLIDTPGH 84 (600)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEECCCc
Confidence 456799999999999999999998532 111 01000 11111 111 111 455788999999999
Q ss_pred ccccccccccccCCcEEEEEEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCcccccC
Q 044772 81 EDYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKD 142 (159)
Q Consensus 81 ~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~ 142 (159)
..|...+..++..+|++|+|+|+++........ .|..... .++|+++|+||+|+...
T Consensus 85 ~dF~~~v~~sl~~aD~aILVVDas~gv~~qt~~--~~~~~~~---~~lpiIvViNKiDl~~a 141 (600)
T PRK05433 85 VDFSYEVSRSLAACEGALLVVDASQGVEAQTLA--NVYLALE---NDLEIIPVLNKIDLPAA 141 (600)
T ss_pred HHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHH--HHHHHHH---CCCCEEEEEECCCCCcc
Confidence 999988899999999999999999876655554 4443322 36899999999999653
No 200
>KOG0076 consensus GTP-binding ADP-ribosylation factor-like protein yARL3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.61 E-value=1.3e-16 Score=109.40 Aligned_cols=119 Identities=21% Similarity=0.264 Sum_probs=88.7
Q ss_pred CcceeeEEEEEcCCCCCHHHHHHHHhcCCC---C----CCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccccccc
Q 044772 18 TATKFIKCVTVRDGAVGKTCLLISYTGNTF---P----TDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRLRPLS 90 (159)
Q Consensus 18 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~---~----~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~ 90 (159)
.....+.++++|..++|||+|+.++..... - ....+|.+-+. .++..+ ...+.+||.+|++..+++|..|
T Consensus 13 ~~Ke~y~vlIlgldnAGKttfLe~~Kt~~~~~~~~l~~~ki~~tvgLni-g~i~v~--~~~l~fwdlgGQe~lrSlw~~y 89 (197)
T KOG0076|consen 13 FKKEDYSVLILGLDNAGKTTFLEALKTDFSKAYGGLNPSKITPTVGLNI-GTIEVC--NAPLSFWDLGGQESLRSLWKKY 89 (197)
T ss_pred hhhhhhhheeeccccCCchhHHHHHHHHHHhhhcCCCHHHeecccceee-cceeec--cceeEEEEcCChHHHHHHHHHH
Confidence 345568899999999999999987753321 0 11223333222 122333 3458999999999999999999
Q ss_pred ccCCcEEEEEEeCCChhhHHhhhhhhHHHHHhhh--CCCCCEEEEeeCccccc
Q 044772 91 YRGADVFILAFSLISRPSYENISKKKWVPELRHY--APSVPIVLVGTKLDLRK 141 (159)
Q Consensus 91 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~--~~~~piilv~nK~Dl~~ 141 (159)
|..+|++|+++|.++++.|.... .-++.+... .+++|+++.+||.|+.+
T Consensus 90 Y~~~H~ii~viDa~~~eR~~~~~--t~~~~v~~~E~leg~p~L~lankqd~q~ 140 (197)
T KOG0076|consen 90 YWLAHGIIYVIDATDRERFEESK--TAFEKVVENEKLEGAPVLVLANKQDLQN 140 (197)
T ss_pred HHHhceeEEeecCCCHHHHHHHH--HHHHHHHHHHHhcCCchhhhcchhhhhh
Confidence 99999999999999999999887 444444433 36999999999999875
No 201
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.61 E-value=1.4e-15 Score=118.62 Aligned_cols=130 Identities=23% Similarity=0.261 Sum_probs=87.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCC--CCcccceeeeeEEEEEECCeEEEEEEEeCCCccccc---------ccccccc
Q 044772 23 IKCVTVRDGAVGKTCLLISYTGNTFP--TDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYN---------RLRPLSY 91 (159)
Q Consensus 23 ~ki~vvG~~~~GKSsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~---------~~~~~~~ 91 (159)
..|+++|.||||||||.|||++.+.. .++..++.+.........+.. +.+.||+|-+... ......+
T Consensus 4 ~~VAIVGRPNVGKSTLFNRL~g~r~AIV~D~pGvTRDr~y~~~~~~~~~--f~lIDTgGl~~~~~~~l~~~i~~Qa~~Ai 81 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNRLTGRRIAIVSDTPGVTRDRIYGDAEWLGRE--FILIDTGGLDDGDEDELQELIREQALIAI 81 (444)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCeeeEeecCCCCccCCccceeEEcCce--EEEEECCCCCcCCchHHHHHHHHHHHHHH
Confidence 57999999999999999999988743 555555555444444555544 8999999965322 1223457
Q ss_pred cCCcEEEEEEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCcccccCcccccc-----CCCccccccCC
Q 044772 92 RGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKDRQFHLD-----YPGAYTISTEQ 159 (159)
Q Consensus 92 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~r~v~~~-----~~~~~~~~~~~ 159 (159)
..+|+++||+|....-+-.+. ...+.++ ..+.|++||.||+|-.+......| .++-+++|++|
T Consensus 82 ~eADvilfvVD~~~Git~~D~---~ia~~Lr--~~~kpviLvvNK~D~~~~e~~~~efyslG~g~~~~ISA~H 149 (444)
T COG1160 82 EEADVILFVVDGREGITPADE---EIAKILR--RSKKPVILVVNKIDNLKAEELAYEFYSLGFGEPVPISAEH 149 (444)
T ss_pred HhCCEEEEEEeCCCCCCHHHH---HHHHHHH--hcCCCEEEEEEcccCchhhhhHHHHHhcCCCCceEeehhh
Confidence 889999999998753332222 3333333 246899999999998755543333 45557777765
No 202
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=99.61 E-value=3.9e-15 Score=116.67 Aligned_cols=117 Identities=19% Similarity=0.146 Sum_probs=79.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCC-CCcccceeeeeEEEEEECCeEEEEEEEeCCCccccc-------ccccccccCCc
Q 044772 24 KCVTVRDGAVGKTCLLISYTGNTFP-TDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYN-------RLRPLSYRGAD 95 (159)
Q Consensus 24 ki~vvG~~~~GKSsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~-------~~~~~~~~~~~ 95 (159)
.|.|||.||||||||+|+|.+.+.. ..|..|+-......+..++ ...+.++|+||.-.-. ......+.+++
T Consensus 161 dValVG~PNaGKSTLln~Lt~~k~~vs~~p~TT~~p~~Giv~~~~-~~~i~~vDtPGi~~~a~~~~~Lg~~~l~~i~rad 239 (390)
T PRK12298 161 DVGLLGLPNAGKSTFIRAVSAAKPKVADYPFTTLVPNLGVVRVDD-ERSFVVADIPGLIEGASEGAGLGIRFLKHLERCR 239 (390)
T ss_pred cEEEEcCCCCCHHHHHHHHhCCcccccCCCCCccCcEEEEEEeCC-CcEEEEEeCCCccccccchhhHHHHHHHHHHhCC
Confidence 6999999999999999999976643 2333333222222333332 2348999999963211 11123478899
Q ss_pred EEEEEEeCC---ChhhHHhhhhhhHHHHHhhhC---CCCCEEEEeeCcccccCc
Q 044772 96 VFILAFSLI---SRPSYENISKKKWVPELRHYA---PSVPIVLVGTKLDLRKDR 143 (159)
Q Consensus 96 ~~i~v~d~~---~~~s~~~~~~~~~~~~i~~~~---~~~piilv~nK~Dl~~~r 143 (159)
++++|+|++ +.+.+.... .|+..+..+. .+.|++||+||+|+....
T Consensus 240 vlL~VVD~s~~~~~d~~e~~~--~l~~eL~~~~~~L~~kP~IlVlNKiDl~~~~ 291 (390)
T PRK12298 240 VLLHLIDIAPIDGSDPVENAR--IIINELEKYSPKLAEKPRWLVFNKIDLLDEE 291 (390)
T ss_pred EEEEEeccCcccccChHHHHH--HHHHHHHhhhhhhcCCCEEEEEeCCccCChH
Confidence 999999988 445566665 7888777664 368999999999996543
No 203
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.61 E-value=1.2e-14 Score=115.63 Aligned_cols=115 Identities=23% Similarity=0.249 Sum_probs=78.4
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCC--CCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccc-----------
Q 044772 20 TKFIKCVTVRDGAVGKTCLLISYTGNTF--PTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRL----------- 86 (159)
Q Consensus 20 ~~~~ki~vvG~~~~GKSsli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~----------- 86 (159)
...++|+++|.+|+|||||+++|++... .....++........+..++ ..+.+|||+|.......
T Consensus 171 ~~~~~v~ivG~~n~GKStlin~ll~~~~~~~~~~~gtt~~~~~~~~~~~~--~~~~lvDT~G~~~~~~~~~~~e~~~~~~ 248 (435)
T PRK00093 171 DEPIKIAIIGRPNVGKSSLINALLGEERVIVSDIAGTTRDSIDTPFERDG--QKYTLIDTAGIRRKGKVTEGVEKYSVIR 248 (435)
T ss_pred ccceEEEEECCCCCCHHHHHHHHhCCCceeecCCCCceEEEEEEEEEECC--eeEEEEECCCCCCCcchhhHHHHHHHHH
Confidence 3579999999999999999999997652 23333333333333334444 34789999996432211
Q ss_pred ccccccCCcEEEEEEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCccccc
Q 044772 87 RPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRK 141 (159)
Q Consensus 87 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~ 141 (159)
...++..+|++|+|+|+.++.+.... .++..+.. .+.|+++|+||+|+.+
T Consensus 249 ~~~~~~~ad~~ilViD~~~~~~~~~~---~i~~~~~~--~~~~~ivv~NK~Dl~~ 298 (435)
T PRK00093 249 TLKAIERADVVLLVIDATEGITEQDL---RIAGLALE--AGRALVIVVNKWDLVD 298 (435)
T ss_pred HHHHHHHCCEEEEEEeCCCCCCHHHH---HHHHHHHH--cCCcEEEEEECccCCC
Confidence 12357889999999999987666554 33333332 3689999999999874
No 204
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=99.60 E-value=7.7e-15 Score=116.53 Aligned_cols=121 Identities=12% Similarity=0.036 Sum_probs=75.9
Q ss_pred cceeeEEEEEcCCCCCHHHHHHHHhcCCCC-CCc-------------cc---------------ceeeee-EEEEEECCe
Q 044772 19 ATKFIKCVTVRDGAVGKTCLLISYTGNTFP-TDY-------------VP---------------TVFDNF-SANVMVDGR 68 (159)
Q Consensus 19 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~-~~~-------------~~---------------t~~~~~-~~~~~~~~~ 68 (159)
....++|+++|+.++|||||+++|+...-. ... .. ..+.+. .....+...
T Consensus 3 ~k~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~~~ 82 (425)
T PRK12317 3 EKPHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFETD 82 (425)
T ss_pred CCCEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEecC
Confidence 356789999999999999999999843211 000 00 001000 111123334
Q ss_pred EEEEEEEeCCCcccccccccccccCCcEEEEEEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCccccc
Q 044772 69 TVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRK 141 (159)
Q Consensus 69 ~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~ 141 (159)
.+.+.+||+||++.|.......+..+|++++|+|++++..+..... .++..+. .....|+++++||+|+.+
T Consensus 83 ~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~-~~~~~~~-~~~~~~iivviNK~Dl~~ 153 (425)
T PRK12317 83 KYYFTIVDCPGHRDFVKNMITGASQADAAVLVVAADDAGGVMPQTR-EHVFLAR-TLGINQLIVAINKMDAVN 153 (425)
T ss_pred CeEEEEEECCCcccchhhHhhchhcCCEEEEEEEcccCCCCCcchH-HHHHHHH-HcCCCeEEEEEEcccccc
Confidence 5679999999998876655556788999999999986322322221 2222222 222346999999999975
No 205
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=99.59 E-value=1.1e-14 Score=99.22 Aligned_cols=112 Identities=21% Similarity=0.207 Sum_probs=74.9
Q ss_pred EEcCCCCCHHHHHHHHhcCCCC-C-CcccceeeeeEEEEEECCeEEEEEEEeCCCcccccccc-------cccccCCcEE
Q 044772 27 TVRDGAVGKTCLLISYTGNTFP-T-DYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRLR-------PLSYRGADVF 97 (159)
Q Consensus 27 vvG~~~~GKSsli~~l~~~~~~-~-~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~-------~~~~~~~~~~ 97 (159)
++|++|+|||||++++.+.... . ...++...........+. ...+.+||++|...+.... ..++..++++
T Consensus 1 i~G~~gsGKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~~~~~d~i 79 (163)
T cd00880 1 LFGRTNAGKSSLLNALLGQEVAIVSPVPGTTTDPVEYVWELGP-LGPVVLIDTPGIDEAGGLGREREELARRVLERADLI 79 (163)
T ss_pred CcCCCCCCHHHHHHHHhCccccccCCCCCcEECCeEEEEEecC-CCcEEEEECCCCCccccchhhHHHHHHHHHHhCCEE
Confidence 5899999999999999976544 2 222223332232322221 3569999999987654433 3467899999
Q ss_pred EEEEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCcccccCcc
Q 044772 98 ILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKDRQ 144 (159)
Q Consensus 98 i~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~r~ 144 (159)
++|+|..+........ |..... ..+.|+++|+||+|+.....
T Consensus 80 l~v~~~~~~~~~~~~~---~~~~~~--~~~~~~ivv~nK~D~~~~~~ 121 (163)
T cd00880 80 LFVVDADLRADEEEEK---LLELLR--ERGKPVLLVLNKIDLLPEEE 121 (163)
T ss_pred EEEEeCCCCCCHHHHH---HHHHHH--hcCCeEEEEEEccccCChhh
Confidence 9999999876655442 222222 14789999999999875443
No 206
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=99.59 E-value=2.5e-14 Score=94.17 Aligned_cols=105 Identities=23% Similarity=0.259 Sum_probs=67.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCC--CCcccceeeeeEEEEEECCeEEEEEEEeCCCcccc---------ccccccccc
Q 044772 24 KCVTVRDGAVGKTCLLISYTGNTFP--TDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDY---------NRLRPLSYR 92 (159)
Q Consensus 24 ki~vvG~~~~GKSsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~---------~~~~~~~~~ 92 (159)
+|+++|.+|+|||||+++|++.+.. ....++........+..++.. +.++|+||-..- .......+.
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~~~~~~T~~~~~~~~~~~~~~--~~~vDtpG~~~~~~~~~~~~~~~~~~~~~~ 78 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTGKKLAKVSNIPGTTRDPVYGQFEYNNKK--FILVDTPGINDGESQDNDGKEIRKFLEQIS 78 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSTSSEESSSTTSSSSEEEEEEEETTEE--EEEEESSSCSSSSHHHHHHHHHHHHHHHHC
T ss_pred CEEEECCCCCCHHHHHHHHhccccccccccccceeeeeeeeeeeceee--EEEEeCCCCcccchhhHHHHHHHHHHHHHH
Confidence 6899999999999999999975431 222222222223344556655 579999995321 111223347
Q ss_pred CCcEEEEEEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeC
Q 044772 93 GADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTK 136 (159)
Q Consensus 93 ~~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK 136 (159)
.+|++++|+|..++.. .... .++..+. .+.|+++|.||
T Consensus 79 ~~d~ii~vv~~~~~~~-~~~~--~~~~~l~---~~~~~i~v~NK 116 (116)
T PF01926_consen 79 KSDLIIYVVDASNPIT-EDDK--NILRELK---NKKPIILVLNK 116 (116)
T ss_dssp TESEEEEEEETTSHSH-HHHH--HHHHHHH---TTSEEEEEEES
T ss_pred HCCEEEEEEECCCCCC-HHHH--HHHHHHh---cCCCEEEEEcC
Confidence 8999999999776322 1111 4444443 57999999998
No 207
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=99.59 E-value=9.2e-15 Score=116.12 Aligned_cols=122 Identities=11% Similarity=0.009 Sum_probs=77.9
Q ss_pred cceeeEEEEEcCCCCCHHHHHHHHhc--CCCCCCc----------c-----------c------ceeeee-EEEEEECCe
Q 044772 19 ATKFIKCVTVRDGAVGKTCLLISYTG--NTFPTDY----------V-----------P------TVFDNF-SANVMVDGR 68 (159)
Q Consensus 19 ~~~~~ki~vvG~~~~GKSsli~~l~~--~~~~~~~----------~-----------~------t~~~~~-~~~~~~~~~ 68 (159)
....++|+++|+.++|||||+.+|+. +.+.... . . ..+.+. .....+...
T Consensus 4 ~~~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~~~~ 83 (426)
T TIGR00483 4 EKEHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWKFETD 83 (426)
T ss_pred CCceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEEEccC
Confidence 35678999999999999999999985 2221100 0 0 000000 111123334
Q ss_pred EEEEEEEeCCCcccccccccccccCCcEEEEEEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCccccc
Q 044772 69 TVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRK 141 (159)
Q Consensus 69 ~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~ 141 (159)
.+.+.+||+||++.|.......+..+|++++|+|+++.+++..... .+...+.......|++|++||+|+.+
T Consensus 84 ~~~i~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t-~~~~~~~~~~~~~~iIVviNK~Dl~~ 155 (426)
T TIGR00483 84 KYEVTIVDCPGHRDFIKNMITGASQADAAVLVVAVGDGEFEVQPQT-REHAFLARTLGINQLIVAINKMDSVN 155 (426)
T ss_pred CeEEEEEECCCHHHHHHHHHhhhhhCCEEEEEEECCCCCcccCCch-HHHHHHHHHcCCCeEEEEEEChhccC
Confidence 4679999999998887655666789999999999998754422221 11112222223457999999999964
No 208
>PRK04004 translation initiation factor IF-2; Validated
Probab=99.59 E-value=1.2e-14 Score=119.12 Aligned_cols=113 Identities=22% Similarity=0.246 Sum_probs=77.7
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccc----ceeeeeEEEEEE---CCeE-----E-----EEEEEeCCCccc
Q 044772 20 TKFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVP----TVFDNFSANVMV---DGRT-----V-----NLGLWDTAGQED 82 (159)
Q Consensus 20 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~----t~~~~~~~~~~~---~~~~-----~-----~~~i~D~~g~~~ 82 (159)
.+...|+++|+.++|||||+++|.+..+.....+ +.+..+...... .+.. . .+.+|||||++.
T Consensus 4 ~R~p~V~i~Gh~~~GKTSLl~~l~~~~v~~~~~g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDTPG~e~ 83 (586)
T PRK04004 4 LRQPIVVVLGHVDHGKTTLLDKIRGTAVAAKEAGGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKIPGLLFIDTPGHEA 83 (586)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCcccccCCCCceEEeeceeeccccccccccceeccccccccccCCEEEEECCChHH
Confidence 4566799999999999999999986654333221 222211110000 0111 1 168999999999
Q ss_pred ccccccccccCCcEEEEEEeCCC---hhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCcccc
Q 044772 83 YNRLRPLSYRGADVFILAFSLIS---RPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLR 140 (159)
Q Consensus 83 ~~~~~~~~~~~~~~~i~v~d~~~---~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~ 140 (159)
|..++...+..+|++++|+|+++ +.++..+. ++ .. .++|+++++||+|+.
T Consensus 84 f~~~~~~~~~~aD~~IlVvDa~~g~~~qt~e~i~---~~---~~--~~vpiIvviNK~D~~ 136 (586)
T PRK04004 84 FTNLRKRGGALADIAILVVDINEGFQPQTIEAIN---IL---KR--RKTPFVVAANKIDRI 136 (586)
T ss_pred HHHHHHHhHhhCCEEEEEEECCCCCCHhHHHHHH---HH---HH--cCCCEEEEEECcCCc
Confidence 99888888899999999999987 45554442 22 11 378999999999985
No 209
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=99.58 E-value=1.1e-14 Score=105.42 Aligned_cols=112 Identities=18% Similarity=0.079 Sum_probs=69.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCC-CCC-c------------------------------ccceeeeeEEEEEECCeEEE
Q 044772 24 KCVTVRDGAVGKTCLLISYTGNTF-PTD-Y------------------------------VPTVFDNFSANVMVDGRTVN 71 (159)
Q Consensus 24 ki~vvG~~~~GKSsli~~l~~~~~-~~~-~------------------------------~~t~~~~~~~~~~~~~~~~~ 71 (159)
||+++|++++|||||+++|+...- ... . ....-......+ ......
T Consensus 1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~--~~~~~~ 78 (208)
T cd04166 1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYF--STPKRK 78 (208)
T ss_pred CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEE--ecCCce
Confidence 589999999999999999975331 110 0 000000001111 222346
Q ss_pred EEEEeCCCcccccccccccccCCcEEEEEEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCccccc
Q 044772 72 LGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRK 141 (159)
Q Consensus 72 ~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~ 141 (159)
+.+|||||++.|.......+..+|++|+|+|+++...-... .....+ ......++++|.||+|+..
T Consensus 79 ~~liDTpG~~~~~~~~~~~~~~ad~~llVvD~~~~~~~~~~---~~~~~~-~~~~~~~iIvviNK~D~~~ 144 (208)
T cd04166 79 FIIADTPGHEQYTRNMVTGASTADLAILLVDARKGVLEQTR---RHSYIL-SLLGIRHVVVAVNKMDLVD 144 (208)
T ss_pred EEEEECCcHHHHHHHHHHhhhhCCEEEEEEECCCCccHhHH---HHHHHH-HHcCCCcEEEEEEchhccc
Confidence 88999999988766666678899999999999865322211 111111 1122345788999999864
No 210
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=99.58 E-value=1.4e-14 Score=121.68 Aligned_cols=116 Identities=14% Similarity=0.135 Sum_probs=78.3
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCC-CCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccc----------cccc
Q 044772 22 FIKCVTVRDGAVGKTCLLISYTGNTFP-TDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRL----------RPLS 90 (159)
Q Consensus 22 ~~ki~vvG~~~~GKSsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~----------~~~~ 90 (159)
.++|+++|++|||||||+|+|.+.+.. .++..+.-+ .++-.+.....++.+||+||...+... ...+
T Consensus 3 ~~~IaLvG~pNvGKSTLfN~Ltg~~~~vgn~pGvTve--~k~g~~~~~~~~i~lvDtPG~ysl~~~~~~~s~~E~i~~~~ 80 (772)
T PRK09554 3 KLTIGLIGNPNSGKTTLFNQLTGARQRVGNWAGVTVE--RKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHY 80 (772)
T ss_pred ceEEEEECCCCCCHHHHHHHHhCCCCccCCCCCceEe--eEEEEEEcCceEEEEEECCCccccccccccccHHHHHHHHH
Confidence 478999999999999999999977643 222222221 222223444467999999998766432 1123
Q ss_pred c--cCCcEEEEEEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCcccccCcccc
Q 044772 91 Y--RGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKDRQFH 146 (159)
Q Consensus 91 ~--~~~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~r~v~ 146 (159)
+ ..+|++++|+|.++.+.-. .|...+.+ .++|++++.||+|+.+.+.+.
T Consensus 81 l~~~~aD~vI~VvDat~ler~l-----~l~~ql~e--~giPvIvVlNK~Dl~~~~~i~ 131 (772)
T PRK09554 81 ILSGDADLLINVVDASNLERNL-----YLTLQLLE--LGIPCIVALNMLDIAEKQNIR 131 (772)
T ss_pred HhccCCCEEEEEecCCcchhhH-----HHHHHHHH--cCCCEEEEEEchhhhhccCcH
Confidence 2 4799999999998755422 33333433 368999999999998666554
No 211
>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=99.58 E-value=9.3e-15 Score=108.81 Aligned_cols=131 Identities=17% Similarity=0.217 Sum_probs=87.7
Q ss_pred CCCCCcceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccc---------
Q 044772 14 TTTTTATKFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYN--------- 84 (159)
Q Consensus 14 ~~~~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~--------- 84 (159)
+......+...|++||.||+|||||.|.+++.+................-.+-....++.++|+||--.-.
T Consensus 64 rde~e~~k~L~vavIG~PNvGKStLtN~mig~kv~~vS~K~~TTr~~ilgi~ts~eTQlvf~DTPGlvs~~~~r~~~l~~ 143 (379)
T KOG1423|consen 64 RDEEEAQKSLYVAVIGAPNVGKSTLTNQMIGQKVSAVSRKVHTTRHRILGIITSGETQLVFYDTPGLVSKKMHRRHHLMM 143 (379)
T ss_pred CCchhcceEEEEEEEcCCCcchhhhhhHhhCCccccccccccceeeeeeEEEecCceEEEEecCCcccccchhhhHHHHH
Confidence 33456789999999999999999999999999976443322222222111122233579999999942211
Q ss_pred ---ccccccccCCcEEEEEEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCcccccCcccccc
Q 044772 85 ---RLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKDRQFHLD 148 (159)
Q Consensus 85 ---~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~r~v~~~ 148 (159)
..-...+.++|.+++++|+++... .+.. ..+..+..+. ++|-++|.||.|+..++.+..+
T Consensus 144 s~lq~~~~a~q~AD~vvVv~Das~tr~--~l~p-~vl~~l~~ys-~ips~lvmnkid~~k~k~~Ll~ 206 (379)
T KOG1423|consen 144 SVLQNPRDAAQNADCVVVVVDASATRT--PLHP-RVLHMLEEYS-KIPSILVMNKIDKLKQKRLLLN 206 (379)
T ss_pred HhhhCHHHHHhhCCEEEEEEeccCCcC--ccCh-HHHHHHHHHh-cCCceeeccchhcchhhhHHhh
Confidence 112234567999999999997433 3332 4555555543 7999999999999887776543
No 212
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=99.57 E-value=3.4e-14 Score=104.49 Aligned_cols=82 Identities=21% Similarity=0.214 Sum_probs=57.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCC-CCcccceeeeeEEEEEECCeEEEEEEEeCCCccccc-------ccccccccCCc
Q 044772 24 KCVTVRDGAVGKTCLLISYTGNTFP-TDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYN-------RLRPLSYRGAD 95 (159)
Q Consensus 24 ki~vvG~~~~GKSsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~-------~~~~~~~~~~~ 95 (159)
+++++|++|+|||||+++|.+.... ..+..+........+.+++ ..+++||+||..... .....++++++
T Consensus 2 ~v~lvG~~~~GKStLl~~Ltg~~~~v~~~~~tT~~~~~g~~~~~~--~~i~l~DtpG~~~~~~~~~~~~~~~l~~~~~ad 79 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKLTNTKSEVAAYEFTTLTCVPGVLEYKG--AKIQLLDLPGIIEGAADGKGRGRQVIAVARTAD 79 (233)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCCCccccceEEEEEECC--eEEEEEECCCcccccccchhHHHHHHHhhccCC
Confidence 7899999999999999999977632 3333333222233444554 468999999974322 12235688999
Q ss_pred EEEEEEeCCChh
Q 044772 96 VFILAFSLISRP 107 (159)
Q Consensus 96 ~~i~v~d~~~~~ 107 (159)
++++|+|++++.
T Consensus 80 ~il~V~D~t~~~ 91 (233)
T cd01896 80 LILMVLDATKPE 91 (233)
T ss_pred EEEEEecCCcch
Confidence 999999998765
No 213
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=99.57 E-value=1.4e-14 Score=118.78 Aligned_cols=116 Identities=16% Similarity=0.116 Sum_probs=81.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcC--CCCCCccc------------ceeeee-EEEEEECCeEEEEEEEeCCCcccccccc
Q 044772 23 IKCVTVRDGAVGKTCLLISYTGN--TFPTDYVP------------TVFDNF-SANVMVDGRTVNLGLWDTAGQEDYNRLR 87 (159)
Q Consensus 23 ~ki~vvG~~~~GKSsli~~l~~~--~~~~~~~~------------t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~ 87 (159)
.+|+++|+.++|||||+.+|+.. .+...... ..+.+. .....+....+++++|||||+..|....
T Consensus 2 RNIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~~~~kinlIDTPGh~DF~~ev 81 (594)
T TIGR01394 2 RNIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRYNGTKINIVDTPGHADFGGEV 81 (594)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEECCEEEEEEECCCHHHHHHHH
Confidence 47999999999999999999863 33221100 001111 2222334445779999999999999888
Q ss_pred cccccCCcEEEEEEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCcccccCc
Q 044772 88 PLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKDR 143 (159)
Q Consensus 88 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~r 143 (159)
..++..+|++++|+|+.+.. +.... .|+..+.. .++|+++++||+|+...+
T Consensus 82 ~~~l~~aD~alLVVDa~~G~-~~qT~--~~l~~a~~--~~ip~IVviNKiD~~~a~ 132 (594)
T TIGR01394 82 ERVLGMVDGVLLLVDASEGP-MPQTR--FVLKKALE--LGLKPIVVINKIDRPSAR 132 (594)
T ss_pred HHHHHhCCEEEEEEeCCCCC-cHHHH--HHHHHHHH--CCCCEEEEEECCCCCCcC
Confidence 89999999999999998642 22222 55555444 368999999999997544
No 214
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=99.57 E-value=1.2e-14 Score=108.89 Aligned_cols=114 Identities=19% Similarity=0.198 Sum_probs=75.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCcccce----------------eeee-EEEEEECCeEEEEEEEeCCCccccccc
Q 044772 24 KCVTVRDGAVGKTCLLISYTGNTFPTDYVPTV----------------FDNF-SANVMVDGRTVNLGLWDTAGQEDYNRL 86 (159)
Q Consensus 24 ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~----------------~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~ 86 (159)
+|+++|++|+|||||+++|+............ +... .....+....+.+++||+||+..|...
T Consensus 1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~~f~~~ 80 (268)
T cd04170 1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLEWKGHKINLIDTPGYADFVGE 80 (268)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeEEEEECCEEEEEEECcCHHHHHHH
Confidence 58999999999999999998543211100000 0000 111112223357899999999888777
Q ss_pred ccccccCCcEEEEEEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCcccccC
Q 044772 87 RPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKD 142 (159)
Q Consensus 87 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~ 142 (159)
...++..+|++++|+|.++........ .| ..+.. .++|+++++||+|+...
T Consensus 81 ~~~~l~~aD~~i~Vvd~~~g~~~~~~~--~~-~~~~~--~~~p~iivvNK~D~~~~ 131 (268)
T cd04170 81 TRAALRAADAALVVVSAQSGVEVGTEK--LW-EFADE--AGIPRIIFINKMDRERA 131 (268)
T ss_pred HHHHHHHCCEEEEEEeCCCCCCHHHHH--HH-HHHHH--cCCCEEEEEECCccCCC
Confidence 788899999999999998765443332 22 22222 36899999999998754
No 215
>KOG0072 consensus GTP-binding ADP-ribosylation factor-like protein ARL1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.57 E-value=1.9e-15 Score=100.94 Aligned_cols=117 Identities=16% Similarity=0.204 Sum_probs=92.2
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEE
Q 044772 20 TKFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL 99 (159)
Q Consensus 20 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~ 99 (159)
.+..+++++|.-|+|||+++.++.-++.. ...|+++.... .+.....++++||++|+...+..|+.||.+.+++|+
T Consensus 16 e~e~rililgldGaGkttIlyrlqvgevv-ttkPtigfnve---~v~yKNLk~~vwdLggqtSirPyWRcYy~dt~avIy 91 (182)
T KOG0072|consen 16 EREMRILILGLDGAGKTTILYRLQVGEVV-TTKPTIGFNVE---TVPYKNLKFQVWDLGGQTSIRPYWRCYYADTDAVIY 91 (182)
T ss_pred ccceEEEEeeccCCCeeEEEEEcccCccc-ccCCCCCcCcc---ccccccccceeeEccCcccccHHHHHHhcccceEEE
Confidence 37889999999999999999999876654 34667665443 223345679999999999999999999999999999
Q ss_pred EEeCCChhhHHhhhhhhHHHHHhhhC-CCCCEEEEeeCccccc
Q 044772 100 AFSLISRPSYENISKKKWVPELRHYA-PSVPIVLVGTKLDLRK 141 (159)
Q Consensus 100 v~d~~~~~s~~~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~ 141 (159)
|+|.+|+........ .+...+.+-. .+..++|++||.|...
T Consensus 92 VVDssd~dris~a~~-el~~mL~E~eLq~a~llv~anKqD~~~ 133 (182)
T KOG0072|consen 92 VVDSSDRDRISIAGV-ELYSMLQEEELQHAKLLVFANKQDYSG 133 (182)
T ss_pred EEeccchhhhhhhHH-HHHHHhccHhhcCceEEEEeccccchh
Confidence 999999887766554 5555554332 3578999999999854
No 216
>PRK13351 elongation factor G; Reviewed
Probab=99.55 E-value=1.1e-14 Score=121.75 Aligned_cols=116 Identities=19% Similarity=0.134 Sum_probs=82.3
Q ss_pred cceeeEEEEEcCCCCCHHHHHHHHhcCCCC-------------CC-------cccceeeeeEEEEEECCeEEEEEEEeCC
Q 044772 19 ATKFIKCVTVRDGAVGKTCLLISYTGNTFP-------------TD-------YVPTVFDNFSANVMVDGRTVNLGLWDTA 78 (159)
Q Consensus 19 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~-------------~~-------~~~t~~~~~~~~~~~~~~~~~~~i~D~~ 78 (159)
.....+|+|+|+.++|||||+++|+...-. .+ +..|.... ..........+++||+|
T Consensus 5 ~~~irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~---~~~~~~~~~~i~liDtP 81 (687)
T PRK13351 5 LMQIRNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESA---ATSCDWDNHRINLIDTP 81 (687)
T ss_pred cccccEEEEECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccc---eEEEEECCEEEEEEECC
Confidence 346789999999999999999999853210 00 01111111 11222334679999999
Q ss_pred CcccccccccccccCCcEEEEEEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCcccccC
Q 044772 79 GQEDYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKD 142 (159)
Q Consensus 79 g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~ 142 (159)
|+..|...+..+++.+|++++|+|.++...+.... .| ..+.. .++|+++++||+|+...
T Consensus 82 G~~df~~~~~~~l~~aD~~ilVvd~~~~~~~~~~~--~~-~~~~~--~~~p~iiviNK~D~~~~ 140 (687)
T PRK13351 82 GHIDFTGEVERSLRVLDGAVVVFDAVTGVQPQTET--VW-RQADR--YGIPRLIFINKMDRVGA 140 (687)
T ss_pred CcHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHH--HH-HHHHh--cCCCEEEEEECCCCCCC
Confidence 99998888888999999999999999876665443 34 32322 36899999999998754
No 217
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=99.55 E-value=2.7e-14 Score=117.28 Aligned_cols=109 Identities=14% Similarity=0.183 Sum_probs=73.8
Q ss_pred cCCCCCHHHHHHHHhcCCCCCCccc-ceeeeeEEEEEECCeEEEEEEEeCCCccccccc------ccccc--cCCcEEEE
Q 044772 29 RDGAVGKTCLLISYTGNTFPTDYVP-TVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRL------RPLSY--RGADVFIL 99 (159)
Q Consensus 29 G~~~~GKSsli~~l~~~~~~~~~~~-t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~------~~~~~--~~~~~~i~ 99 (159)
|++|||||||+|++.+..+...+.+ +..+.....+..++. .+++||+||+..+... ...++ ..+|++++
T Consensus 1 G~pNvGKSSL~N~Ltg~~~~v~n~pG~Tv~~~~~~i~~~~~--~i~lvDtPG~~~~~~~s~~e~v~~~~l~~~~aDvvI~ 78 (591)
T TIGR00437 1 GNPNVGKSTLFNALTGANQTVGNWPGVTVEKKEGKLGFQGE--DIEIVDLPGIYSLTTFSLEEEVARDYLLNEKPDLVVN 78 (591)
T ss_pred CCCCCCHHHHHHHHhCCCCeecCCCCeEEEEEEEEEEECCe--EEEEEECCCccccCccchHHHHHHHHHhhcCCCEEEE
Confidence 8999999999999998876433333 322222334455553 4799999999876543 23333 37899999
Q ss_pred EEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCcccccCcccc
Q 044772 100 AFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKDRQFH 146 (159)
Q Consensus 100 v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~r~v~ 146 (159)
|+|.++.+... .+...+.+ .+.|+++|+||+|+.+++.+.
T Consensus 79 VvDat~ler~l-----~l~~ql~~--~~~PiIIVlNK~Dl~~~~~i~ 118 (591)
T TIGR00437 79 VVDASNLERNL-----YLTLQLLE--LGIPMILALNLVDEAEKKGIR 118 (591)
T ss_pred EecCCcchhhH-----HHHHHHHh--cCCCEEEEEehhHHHHhCCCh
Confidence 99998743321 33333332 368999999999997766554
No 218
>COG1159 Era GTPase [General function prediction only]
Probab=99.55 E-value=4e-14 Score=105.27 Aligned_cols=118 Identities=18% Similarity=0.187 Sum_probs=78.7
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCCC--CCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccc--------ccc
Q 044772 20 TKFIKCVTVRDGAVGKTCLLISYTGNTFP--TDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRL--------RPL 89 (159)
Q Consensus 20 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~--------~~~ 89 (159)
.+.--|+++|.|+||||||+|++++.+.. +....|+.......+..+ ..++.+.||||-..-... ...
T Consensus 4 ~ksGfVaIiGrPNvGKSTLlN~l~G~KisIvS~k~QTTR~~I~GI~t~~--~~QiIfvDTPGih~pk~~l~~~m~~~a~~ 81 (298)
T COG1159 4 FKSGFVAIIGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIVTTD--NAQIIFVDTPGIHKPKHALGELMNKAARS 81 (298)
T ss_pred ceEEEEEEEcCCCCcHHHHHHHHhcCceEeecCCcchhhhheeEEEEcC--CceEEEEeCCCCCCcchHHHHHHHHHHHH
Confidence 34567999999999999999999999864 222223232223333333 456899999995332222 233
Q ss_pred cccCCcEEEEEEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCcccccCcc
Q 044772 90 SYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKDRQ 144 (159)
Q Consensus 90 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~r~ 144 (159)
.+.++|.++||.|+++...- -+. ..++.++. .+.|++++.||+|......
T Consensus 82 sl~dvDlilfvvd~~~~~~~--~d~-~il~~lk~--~~~pvil~iNKID~~~~~~ 131 (298)
T COG1159 82 ALKDVDLILFVVDADEGWGP--GDE-FILEQLKK--TKTPVILVVNKIDKVKPKT 131 (298)
T ss_pred HhccCcEEEEEEeccccCCc--cHH-HHHHHHhh--cCCCeEEEEEccccCCcHH
Confidence 47889999999999975443 221 33444443 3579999999999876555
No 219
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=99.54 E-value=6.3e-14 Score=109.69 Aligned_cols=117 Identities=23% Similarity=0.317 Sum_probs=85.1
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCC--CCCCcccceeeeeEEEEEECCeEEEEEEEeCCCcccccccc--------cc
Q 044772 20 TKFIKCVTVRDGAVGKTCLLISYTGNT--FPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRLR--------PL 89 (159)
Q Consensus 20 ~~~~ki~vvG~~~~GKSsli~~l~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~--------~~ 89 (159)
...+|++++|.||||||||+|.|++.. +..+..+|+.+.....+.++| +.+.+.||.|--...... ..
T Consensus 215 r~G~kvvIiG~PNvGKSSLLNaL~~~d~AIVTdI~GTTRDviee~i~i~G--~pv~l~DTAGiRet~d~VE~iGIeRs~~ 292 (454)
T COG0486 215 REGLKVVIIGRPNVGKSSLLNALLGRDRAIVTDIAGTTRDVIEEDINLNG--IPVRLVDTAGIRETDDVVERIGIERAKK 292 (454)
T ss_pred hcCceEEEECCCCCcHHHHHHHHhcCCceEecCCCCCccceEEEEEEECC--EEEEEEecCCcccCccHHHHHHHHHHHH
Confidence 456899999999999999999999766 335556666666666777777 558999999965444332 23
Q ss_pred cccCCcEEEEEEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCcccccCcc
Q 044772 90 SYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKDRQ 144 (159)
Q Consensus 90 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~r~ 144 (159)
.+..+|.+++|+|.+.+..-... ..+. ....+.|+++|.||.||.....
T Consensus 293 ~i~~ADlvL~v~D~~~~~~~~d~---~~~~---~~~~~~~~i~v~NK~DL~~~~~ 341 (454)
T COG0486 293 AIEEADLVLFVLDASQPLDKEDL---ALIE---LLPKKKPIIVVLNKADLVSKIE 341 (454)
T ss_pred HHHhCCEEEEEEeCCCCCchhhH---HHHH---hcccCCCEEEEEechhcccccc
Confidence 46789999999999986332222 2222 2335789999999999986544
No 220
>COG0218 Predicted GTPase [General function prediction only]
Probab=99.54 E-value=4.9e-14 Score=99.60 Aligned_cols=118 Identities=19% Similarity=0.157 Sum_probs=78.1
Q ss_pred CCcceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeee-EEEEEECCeEEEEEEEeCCCc----------ccccc
Q 044772 17 TTATKFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNF-SANVMVDGRTVNLGLWDTAGQ----------EDYNR 85 (159)
Q Consensus 17 ~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~----------~~~~~ 85 (159)
.++.....|+++|.+|||||||+|.|++++-......|.|.+- ..-..+++. +.+.|.||. +.+..
T Consensus 19 ~P~~~~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNff~~~~~---~~lVDlPGYGyAkv~k~~~e~w~~ 95 (200)
T COG0218 19 YPEDDLPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINFFEVDDE---LRLVDLPGYGYAKVPKEVKEKWKK 95 (200)
T ss_pred CCCCCCcEEEEEccCcccHHHHHHHHhCCcceeecCCCCCccceeEEEEecCc---EEEEeCCCcccccCCHHHHHHHHH
Confidence 4555677899999999999999999999773222222333322 223334443 789999983 23344
Q ss_pred cccccccC---CcEEEEEEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCcccccC
Q 044772 86 LRPLSYRG---ADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKD 142 (159)
Q Consensus 86 ~~~~~~~~---~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~ 142 (159)
+..+|+.. ..++++++|+..+-.-.+...++|+.. .++|++||+||+|....
T Consensus 96 ~i~~YL~~R~~L~~vvlliD~r~~~~~~D~em~~~l~~-----~~i~~~vv~tK~DKi~~ 150 (200)
T COG0218 96 LIEEYLEKRANLKGVVLLIDARHPPKDLDREMIEFLLE-----LGIPVIVVLTKADKLKK 150 (200)
T ss_pred HHHHHHhhchhheEEEEEEECCCCCcHHHHHHHHHHHH-----cCCCeEEEEEccccCCh
Confidence 55666643 567888889886655444433355544 36999999999997654
No 221
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=99.54 E-value=5e-14 Score=101.52 Aligned_cols=115 Identities=19% Similarity=0.125 Sum_probs=70.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCC---C--cccceeeeeEEEEEEC---------------------------C---
Q 044772 23 IKCVTVRDGAVGKTCLLISYTGNTFPT---D--YVPTVFDNFSANVMVD---------------------------G--- 67 (159)
Q Consensus 23 ~ki~vvG~~~~GKSsli~~l~~~~~~~---~--~~~t~~~~~~~~~~~~---------------------------~--- 67 (159)
++|.++|+.|+|||||+..+.+..... . ..-+....+.. +... +
T Consensus 1 ~~i~~~g~~~~GKttL~~~l~~~~~~~~~~e~~~~~s~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (203)
T cd01888 1 INIGTIGHVAHGKSTLVKALSGVWTVRFKEELERNITIKLGYAN-AKIYKCPNCGCPRPYCYRSKEDSPECECPGCGGET 79 (203)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCCeeEEcCCceeecccc-cccccccCcCCCCccccccccccccccccccCCcc
Confidence 478999999999999999996542111 0 00011111100 0000 1
Q ss_pred -eEEEEEEEeCCCcccccccccccccCCcEEEEEEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCccccc
Q 044772 68 -RTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRK 141 (159)
Q Consensus 68 -~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~ 141 (159)
....+.+||+||++.|.......+..+|++++|+|+.++....... ..+..+.. ....|++||+||+|+..
T Consensus 80 ~~~~~i~~iDtPG~~~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~--~~l~~~~~-~~~~~iiivvNK~Dl~~ 151 (203)
T cd01888 80 KLVRHVSFVDCPGHEILMATMLSGAAVMDGALLLIAANEPCPQPQTS--EHLAALEI-MGLKHIIIVQNKIDLVK 151 (203)
T ss_pred ccccEEEEEECCChHHHHHHHHHhhhcCCEEEEEEECCCCCCCcchH--HHHHHHHH-cCCCcEEEEEEchhccC
Confidence 1156899999999988777777788899999999998632111111 11111211 12357999999999975
No 222
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=99.54 E-value=3.8e-14 Score=97.80 Aligned_cols=109 Identities=19% Similarity=0.192 Sum_probs=69.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeeeE-EEEEECCeEEEEEEEeCCCccc----------cccccccccc
Q 044772 24 KCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFS-ANVMVDGRTVNLGLWDTAGQED----------YNRLRPLSYR 92 (159)
Q Consensus 24 ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~D~~g~~~----------~~~~~~~~~~ 92 (159)
+|+++|.+|+|||||++.+.++.+.....++.+.+.. .....++ .+.+||++|... +......++.
T Consensus 1 ~i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~~~D~~g~~~~~~~~~~~~~~~~~~~~~~~ 77 (170)
T cd01876 1 EIAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLINFFNVND---KFRLVDLPGYGYAKVSKEVKEKWGKLIEEYLE 77 (170)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcceeEEEEEccC---eEEEecCCCccccccCHHHHHHHHHHHHHHHH
Confidence 4899999999999999999976665554444433221 1222222 689999998432 2233333443
Q ss_pred ---CCcEEEEEEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCcccc
Q 044772 93 ---GADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLR 140 (159)
Q Consensus 93 ---~~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~ 140 (159)
+.+.+++++|..+..+........|+... +.|+++++||+|+.
T Consensus 78 ~~~~~~~~~~v~d~~~~~~~~~~~~~~~l~~~-----~~~vi~v~nK~D~~ 123 (170)
T cd01876 78 NRENLKGVVLLIDSRHGPTEIDLEMLDWLEEL-----GIPFLVVLTKADKL 123 (170)
T ss_pred hChhhhEEEEEEEcCcCCCHhHHHHHHHHHHc-----CCCEEEEEEchhcC
Confidence 45788899998765322222111454432 48999999999984
No 223
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=99.53 E-value=7.6e-14 Score=99.34 Aligned_cols=115 Identities=23% Similarity=0.210 Sum_probs=77.3
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCCCCCc--------------------ccceeeeeEEEEEECCeEEEEEEEeCCCc
Q 044772 21 KFIKCVTVRDGAVGKTCLLISYTGNTFPTDY--------------------VPTVFDNFSANVMVDGRTVNLGLWDTAGQ 80 (159)
Q Consensus 21 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~--------------------~~t~~~~~~~~~~~~~~~~~~~i~D~~g~ 80 (159)
+.++|+++|+.++|||||+.+|+........ .-|... .......+.....+.++|+||+
T Consensus 2 ~~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~-~~~~~~~~~~~~~i~~iDtPG~ 80 (188)
T PF00009_consen 2 NIRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDL-SFISFEKNENNRKITLIDTPGH 80 (188)
T ss_dssp TEEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSS-EEEEEEBTESSEEEEEEEESSS
T ss_pred CEEEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhccccccc-ccccccccccccceeecccccc
Confidence 4579999999999999999999854422110 000111 1112221234456999999999
Q ss_pred ccccccccccccCCcEEEEEEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCccccc
Q 044772 81 EDYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRK 141 (159)
Q Consensus 81 ~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~ 141 (159)
..|.......+..+|++|+|+|+.+.-..... ..+..+.. .++|++++.||+|+.+
T Consensus 81 ~~f~~~~~~~~~~~D~ailvVda~~g~~~~~~---~~l~~~~~--~~~p~ivvlNK~D~~~ 136 (188)
T PF00009_consen 81 EDFIKEMIRGLRQADIAILVVDANDGIQPQTE---EHLKILRE--LGIPIIVVLNKMDLIE 136 (188)
T ss_dssp HHHHHHHHHHHTTSSEEEEEEETTTBSTHHHH---HHHHHHHH--TT-SEEEEEETCTSSH
T ss_pred cceeecccceecccccceeeeecccccccccc---cccccccc--cccceEEeeeeccchh
Confidence 98888777788999999999999865333322 23333332 3688999999999973
No 224
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=99.53 E-value=4.1e-14 Score=114.65 Aligned_cols=119 Identities=18% Similarity=0.147 Sum_probs=79.5
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhc--CCCC--C-------------Ccccc---eeeee-EEEEEECCeEEEEEEEeCC
Q 044772 20 TKFIKCVTVRDGAVGKTCLLISYTG--NTFP--T-------------DYVPT---VFDNF-SANVMVDGRTVNLGLWDTA 78 (159)
Q Consensus 20 ~~~~ki~vvG~~~~GKSsli~~l~~--~~~~--~-------------~~~~t---~~~~~-~~~~~~~~~~~~~~i~D~~ 78 (159)
.+..+|+++|+.++|||||.++|+. +... . ++.+. .+... .....+....+.+++||||
T Consensus 8 ~~~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~~~~~inliDTP 87 (526)
T PRK00741 8 AKRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPYRDCLINLLDTP 87 (526)
T ss_pred hcCCEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEECCEEEEEEECC
Confidence 4677999999999999999999973 2111 0 00000 01111 1122334445779999999
Q ss_pred CcccccccccccccCCcEEEEEEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCcccccCc
Q 044772 79 GQEDYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKDR 143 (159)
Q Consensus 79 g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~r 143 (159)
|+..|......++..+|++|+|+|+.+..... .. .++..... .++|+++++||+|+....
T Consensus 88 G~~df~~~~~~~l~~aD~aIlVvDa~~gv~~~-t~--~l~~~~~~--~~iPiiv~iNK~D~~~a~ 147 (526)
T PRK00741 88 GHEDFSEDTYRTLTAVDSALMVIDAAKGVEPQ-TR--KLMEVCRL--RDTPIFTFINKLDRDGRE 147 (526)
T ss_pred CchhhHHHHHHHHHHCCEEEEEEecCCCCCHH-HH--HHHHHHHh--cCCCEEEEEECCcccccC
Confidence 99998887777889999999999998643221 11 33333322 479999999999987533
No 225
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=99.52 E-value=4.9e-14 Score=105.65 Aligned_cols=113 Identities=16% Similarity=0.049 Sum_probs=73.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCC-CC------------ccc---ceeeee-EEEEEECCeEEEEEEEeCCCccccccc
Q 044772 24 KCVTVRDGAVGKTCLLISYTGNTFP-TD------------YVP---TVFDNF-SANVMVDGRTVNLGLWDTAGQEDYNRL 86 (159)
Q Consensus 24 ki~vvG~~~~GKSsli~~l~~~~~~-~~------------~~~---t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~ 86 (159)
+|+++|++++|||||+++|+...-. .. +.+ ..+... .....+.....++.+|||||+..|...
T Consensus 1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~df~~~ 80 (270)
T cd01886 1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFWKDHRINIIDTPGHVDFTIE 80 (270)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEECCEEEEEEECCCcHHHHHH
Confidence 5899999999999999999742210 00 000 000000 011112223467899999999888888
Q ss_pred ccccccCCcEEEEEEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCccccc
Q 044772 87 RPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRK 141 (159)
Q Consensus 87 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~ 141 (159)
+..+++.+|++|+|+|..+...-... .++..+.. .++|++++.||+|+.+
T Consensus 81 ~~~~l~~aD~ailVVDa~~g~~~~t~---~~~~~~~~--~~~p~ivviNK~D~~~ 130 (270)
T cd01886 81 VERSLRVLDGAVAVFDAVAGVEPQTE---TVWRQADR--YNVPRIAFVNKMDRTG 130 (270)
T ss_pred HHHHHHHcCEEEEEEECCCCCCHHHH---HHHHHHHH--cCCCEEEEEECCCCCC
Confidence 88899999999999998864322211 33333332 3589999999999874
No 226
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=99.52 E-value=8.6e-14 Score=112.83 Aligned_cols=117 Identities=17% Similarity=0.106 Sum_probs=78.9
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhc-CCCCCCc-----cc----c----------eeeee-EEEEEECCeEEEEEEEeCC
Q 044772 20 TKFIKCVTVRDGAVGKTCLLISYTG-NTFPTDY-----VP----T----------VFDNF-SANVMVDGRTVNLGLWDTA 78 (159)
Q Consensus 20 ~~~~ki~vvG~~~~GKSsli~~l~~-~~~~~~~-----~~----t----------~~~~~-~~~~~~~~~~~~~~i~D~~ 78 (159)
.+..+|+++|++++|||||+++|+. ....... .. + .+... .....++...+.+++||||
T Consensus 9 ~~~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~~~~~~inliDTP 88 (527)
T TIGR00503 9 DKRRTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFPYRDCLVNLLDTP 88 (527)
T ss_pred ccCCEEEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEeeCCeEEEEEECC
Confidence 4678999999999999999999863 2211110 00 0 01111 1223345556789999999
Q ss_pred CcccccccccccccCCcEEEEEEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCccccc
Q 044772 79 GQEDYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRK 141 (159)
Q Consensus 79 g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~ 141 (159)
|+..|......++..+|++|+|+|..+. +..... .+++.... .++|+++++||+|+..
T Consensus 89 G~~df~~~~~~~l~~aD~aIlVvDa~~g--v~~~t~-~l~~~~~~--~~~PiivviNKiD~~~ 146 (527)
T TIGR00503 89 GHEDFSEDTYRTLTAVDNCLMVIDAAKG--VETRTR-KLMEVTRL--RDTPIFTFMNKLDRDI 146 (527)
T ss_pred ChhhHHHHHHHHHHhCCEEEEEEECCCC--CCHHHH-HHHHHHHh--cCCCEEEEEECccccC
Confidence 9988887667788999999999998863 222221 44443332 4689999999999864
No 227
>smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily. SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily.
Probab=99.50 E-value=4.8e-14 Score=93.16 Aligned_cols=102 Identities=25% Similarity=0.282 Sum_probs=73.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCcc-cceeeeeEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEEEE
Q 044772 23 IKCVTVRDGAVGKTCLLISYTGNTFPTDYV-PTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAF 101 (159)
Q Consensus 23 ~ki~vvG~~~~GKSsli~~l~~~~~~~~~~-~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 101 (159)
+|++++|..|+|||+|+.++....+...+. ++.+ +......+.+.++.+++||
T Consensus 1 ~kvv~~G~~gvGKt~l~~~~~~~~~~~~~~~~t~~--------------------------~~~~~~~~~~s~~~~~~v~ 54 (124)
T smart00010 1 FKVVGIGDSGVGKVGKSARFVQFPFDYVPTVFTIG--------------------------IDVYDPTSYESFDVVLQCW 54 (124)
T ss_pred CEEEEECCCChhHHHHHHHHhcCCccccCceehhh--------------------------hhhccccccCCCCEEEEEE
Confidence 589999999999999999998777754433 3322 2223345667889999999
Q ss_pred eCCChhhHHhhhhhhHHHHHhhhC-CCCCEEEEeeCcccccCccccccCCCccc
Q 044772 102 SLISRPSYENISKKKWVPELRHYA-PSVPIVLVGTKLDLRKDRQFHLDYPGAYT 154 (159)
Q Consensus 102 d~~~~~s~~~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~r~v~~~~~~~~~ 154 (159)
+..+++++..+ |...+.... .++|+++++||.|+.+.+++..+++..|+
T Consensus 55 ~~~~~~s~~~~----~~~~i~~~~k~dl~~~~~~nk~dl~~~~~~~~~~~~~~~ 104 (124)
T smart00010 55 RVDDRDSADNK----NVPEVLVGNKSDLPILVGGNRDVLEEERQVATEEGLEFA 104 (124)
T ss_pred EccCHHHHHHH----hHHHHHhcCCCCCcEEEEeechhhHhhCcCCHHHHHHHH
Confidence 99999988633 666665544 47889999999999665566555444443
No 228
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.48 E-value=3.9e-13 Score=105.01 Aligned_cols=123 Identities=25% Similarity=0.287 Sum_probs=86.2
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCC--CCCcccceeeeeEEEEEECCeEEEEEEEeCCCcc----------ccccc-
Q 044772 20 TKFIKCVTVRDGAVGKTCLLISYTGNTF--PTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQE----------DYNRL- 86 (159)
Q Consensus 20 ~~~~ki~vvG~~~~GKSsli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~----------~~~~~- 86 (159)
...+||+++|.|++|||||+|+|+++.- .+....|..+.....+..++.. +.+.||.|-- .|...
T Consensus 176 ~~~ikiaiiGrPNvGKSsLiN~ilgeeR~Iv~~~aGTTRD~I~~~~e~~~~~--~~liDTAGiRrk~ki~e~~E~~Sv~r 253 (444)
T COG1160 176 TDPIKIAIIGRPNVGKSSLINAILGEERVIVSDIAGTTRDSIDIEFERDGRK--YVLIDTAGIRRKGKITESVEKYSVAR 253 (444)
T ss_pred CCceEEEEEeCCCCCchHHHHHhccCceEEecCCCCccccceeeeEEECCeE--EEEEECCCCCcccccccceEEEeehh
Confidence 4679999999999999999999998763 3444445555445555666654 8899999832 22221
Q ss_pred ccccccCCcEEEEEEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCcccccCccccccC
Q 044772 87 RPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKDRQFHLDY 149 (159)
Q Consensus 87 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~r~v~~~~ 149 (159)
....+..++.+++|.|...+-+-++. .....+.+ .+.++++|.||.|+.+.+..+.++
T Consensus 254 t~~aI~~a~vvllviDa~~~~~~qD~---~ia~~i~~--~g~~~vIvvNKWDl~~~~~~~~~~ 311 (444)
T COG1160 254 TLKAIERADVVLLVIDATEGISEQDL---RIAGLIEE--AGRGIVIVVNKWDLVEEDEATMEE 311 (444)
T ss_pred hHhHHhhcCEEEEEEECCCCchHHHH---HHHHHHHH--cCCCeEEEEEccccCCchhhHHHH
Confidence 12346789999999999977665544 33333333 468999999999987765555443
No 229
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=99.47 E-value=3.1e-13 Score=113.03 Aligned_cols=116 Identities=15% Similarity=0.054 Sum_probs=78.8
Q ss_pred cceeeEEEEEcCCCCCHHHHHHHHhcCCCCC-C---cc---------------cceeeeeEEEEEECCeEEEEEEEeCCC
Q 044772 19 ATKFIKCVTVRDGAVGKTCLLISYTGNTFPT-D---YV---------------PTVFDNFSANVMVDGRTVNLGLWDTAG 79 (159)
Q Consensus 19 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~-~---~~---------------~t~~~~~~~~~~~~~~~~~~~i~D~~g 79 (159)
..+..+|+++|+.++|||||+++|+...-.. . .. .+.-......+.. ...++.+|||||
T Consensus 7 ~~~irni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~--~~~~i~liDTPG 84 (689)
T TIGR00484 7 LNRFRNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFW--KGHRINIIDTPG 84 (689)
T ss_pred cccccEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEE--CCeEEEEEECCC
Confidence 3457799999999999999999997422110 0 00 0000001112222 346799999999
Q ss_pred cccccccccccccCCcEEEEEEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCccccc
Q 044772 80 QEDYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRK 141 (159)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~ 141 (159)
+..|......++..+|++++|+|+.+....... .++..+.. .++|+++++||+|+..
T Consensus 85 ~~~~~~~~~~~l~~~D~~ilVvda~~g~~~~~~---~~~~~~~~--~~~p~ivviNK~D~~~ 141 (689)
T TIGR00484 85 HVDFTVEVERSLRVLDGAVAVLDAVGGVQPQSE---TVWRQANR--YEVPRIAFVNKMDKTG 141 (689)
T ss_pred CcchhHHHHHHHHHhCEEEEEEeCCCCCChhHH---HHHHHHHH--cCCCEEEEEECCCCCC
Confidence 988877778889999999999999875444433 33333332 3689999999999875
No 230
>cd00066 G-alpha G protein alpha subunit. The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.
Probab=99.46 E-value=3.6e-13 Score=103.17 Aligned_cols=75 Identities=13% Similarity=0.233 Sum_probs=58.2
Q ss_pred eEEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCh----------hhHHhhhhhhHHHHHhhhC--CCCCEEEEee
Q 044772 68 RTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISR----------PSYENISKKKWVPELRHYA--PSVPIVLVGT 135 (159)
Q Consensus 68 ~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~----------~s~~~~~~~~~~~~i~~~~--~~~piilv~n 135 (159)
..+.+.+||++|+...+..|.+++.++++++||+|+++- ..+.+.. ..+..+.... .+.|++|++|
T Consensus 159 ~~~~~~~~DvgGq~~~R~kW~~~f~~v~~iifvv~lsd~d~~~~e~~~~nrl~esl--~~f~~i~~~~~~~~~pill~~N 236 (317)
T cd00066 159 KNLKFRMFDVGGQRSERKKWIHCFEDVTAIIFVVALSEYDQVLFEDESTNRMQESL--NLFDSICNSRWFANTSIILFLN 236 (317)
T ss_pred cceEEEEECCCCCcccchhHHHHhCCCCEEEEEEEchhcccccccCCcchHHHHHH--HHHHHHHhCccccCCCEEEEcc
Confidence 346788999999999999999999999999999999874 3344444 4444444432 5899999999
Q ss_pred CcccccCcc
Q 044772 136 KLDLRKDRQ 144 (159)
Q Consensus 136 K~Dl~~~r~ 144 (159)
|.|+.+++.
T Consensus 237 K~D~f~~ki 245 (317)
T cd00066 237 KKDLFEEKI 245 (317)
T ss_pred ChHHHHHhh
Confidence 999865443
No 231
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=99.46 E-value=2.4e-13 Score=99.07 Aligned_cols=114 Identities=12% Similarity=0.038 Sum_probs=70.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCC-C---------------C-------cccce----eeee---EEEEEECCeEEEEE
Q 044772 24 KCVTVRDGAVGKTCLLISYTGNTFP-T---------------D-------YVPTV----FDNF---SANVMVDGRTVNLG 73 (159)
Q Consensus 24 ki~vvG~~~~GKSsli~~l~~~~~~-~---------------~-------~~~t~----~~~~---~~~~~~~~~~~~~~ 73 (159)
+|+++|+.++|||||+.+|+...-. . . ..... +... .....+......+.
T Consensus 1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~~~~~i~ 80 (219)
T cd01883 1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFETEKYRFT 80 (219)
T ss_pred CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEeeCCeEEE
Confidence 5899999999999999999732110 0 0 00000 0000 11112222346799
Q ss_pred EEeCCCcccccccccccccCCcEEEEEEeCCChhh---HH---hhhhhhHHHHHhhhCCCCCEEEEeeCcccc
Q 044772 74 LWDTAGQEDYNRLRPLSYRGADVFILAFSLISRPS---YE---NISKKKWVPELRHYAPSVPIVLVGTKLDLR 140 (159)
Q Consensus 74 i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s---~~---~~~~~~~~~~i~~~~~~~piilv~nK~Dl~ 140 (159)
+||+||+..|...+...+..+|++|+|+|+.+... |. ... ..+... ......|+++++||+|+.
T Consensus 81 liDtpG~~~~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~--~~~~~~-~~~~~~~iiivvNK~Dl~ 150 (219)
T cd01883 81 ILDAPGHRDFVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTR--EHALLA-RTLGVKQLIVAVNKMDDV 150 (219)
T ss_pred EEECCChHHHHHHHHHHhhhCCEEEEEEECCCCccccccccccchH--HHHHHH-HHcCCCeEEEEEEccccc
Confidence 99999998777666667788999999999987521 11 111 112222 222246899999999997
No 232
>COG1084 Predicted GTPase [General function prediction only]
Probab=99.45 E-value=5.3e-13 Score=100.39 Aligned_cols=118 Identities=20% Similarity=0.196 Sum_probs=79.5
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCCC-CCcccceeeeeEEEEEECCeEEEEEEEeCCCcc-c-ccccc------cccc
Q 044772 21 KFIKCVTVRDGAVGKTCLLISYTGNTFP-TDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQE-D-YNRLR------PLSY 91 (159)
Q Consensus 21 ~~~ki~vvG~~~~GKSsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~-~-~~~~~------~~~~ 91 (159)
....|+|.|.||||||||++++.+.+-. ..|..|+...+..++..++ ..+|+.||||-- + +..+. ...+
T Consensus 167 ~~pTivVaG~PNVGKSSlv~~lT~AkpEvA~YPFTTK~i~vGhfe~~~--~R~QvIDTPGlLDRPl~ErN~IE~qAi~AL 244 (346)
T COG1084 167 DLPTIVVAGYPNVGKSSLVRKLTTAKPEVAPYPFTTKGIHVGHFERGY--LRIQVIDTPGLLDRPLEERNEIERQAILAL 244 (346)
T ss_pred CCCeEEEecCCCCcHHHHHHHHhcCCCccCCCCccccceeEeeeecCC--ceEEEecCCcccCCChHHhcHHHHHHHHHH
Confidence 4567999999999999999999977643 4566665544444444444 469999999941 1 11110 1112
Q ss_pred c-CCcEEEEEEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCccccc
Q 044772 92 R-GADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRK 141 (159)
Q Consensus 92 ~-~~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~ 141 (159)
+ -.++++|+||.+..-.+.--.-+.++++++.... .|+++|.||.|+.+
T Consensus 245 ~hl~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~f~-~p~v~V~nK~D~~~ 294 (346)
T COG1084 245 RHLAGVILFLFDPSETCGYSLEEQISLLEEIKELFK-APIVVVINKIDIAD 294 (346)
T ss_pred HHhcCeEEEEEcCccccCCCHHHHHHHHHHHHHhcC-CCeEEEEecccccc
Confidence 2 2668899999886544322211377888887775 89999999999874
No 233
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.44 E-value=8.5e-13 Score=94.58 Aligned_cols=115 Identities=23% Similarity=0.191 Sum_probs=73.0
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCC------CCc-----cc---ceeeee-EEEEEECCeEEEEEEEeCCCccccccc
Q 044772 22 FIKCVTVRDGAVGKTCLLISYTGNTFP------TDY-----VP---TVFDNF-SANVMVDGRTVNLGLWDTAGQEDYNRL 86 (159)
Q Consensus 22 ~~ki~vvG~~~~GKSsli~~l~~~~~~------~~~-----~~---t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~ 86 (159)
.++|+++|..++|||||+++|+..... ..+ .+ ..+... .....+.....++.+.|+||+..|...
T Consensus 2 ~~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~~~~~ 81 (195)
T cd01884 2 HVNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYETANRHYAHVDCPGHADYIKN 81 (195)
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeEecCCCeEEEEEECcCHHHHHHH
Confidence 478999999999999999999854100 000 00 001111 111223333456899999999888776
Q ss_pred ccccccCCcEEEEEEeCCChhhHHhhhhhhHHHHHhhhCCCCC-EEEEeeCccccc
Q 044772 87 RPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVP-IVLVGTKLDLRK 141 (159)
Q Consensus 87 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~p-iilv~nK~Dl~~ 141 (159)
....+..+|++++|+|+...-.-... ..+..+.. .++| ++++.||+|+..
T Consensus 82 ~~~~~~~~D~~ilVvda~~g~~~~~~---~~~~~~~~--~~~~~iIvviNK~D~~~ 132 (195)
T cd01884 82 MITGAAQMDGAILVVSATDGPMPQTR---EHLLLARQ--VGVPYIVVFLNKADMVD 132 (195)
T ss_pred HHHHhhhCCEEEEEEECCCCCcHHHH---HHHHHHHH--cCCCcEEEEEeCCCCCC
Confidence 67778899999999998754221111 33333332 2456 789999999853
No 234
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=99.43 E-value=4.3e-13 Score=112.61 Aligned_cols=117 Identities=19% Similarity=0.078 Sum_probs=78.8
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCC---------------CCCC---cccceeeee-EEEEEECCeEEEEEEEeCCCc
Q 044772 20 TKFIKCVTVRDGAVGKTCLLISYTGNT---------------FPTD---YVPTVFDNF-SANVMVDGRTVNLGLWDTAGQ 80 (159)
Q Consensus 20 ~~~~ki~vvG~~~~GKSsli~~l~~~~---------------~~~~---~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~ 80 (159)
....+|+++|+.++|||||+++|+... +... +..|..... ......++..+.+++|||||+
T Consensus 17 ~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~i~liDTPG~ 96 (720)
T TIGR00490 17 KFIRNIGIVAHIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVSMVHEYEGNEYLINLIDTPGH 96 (720)
T ss_pred ccccEEEEEEeCCCCHHHHHHHHHHHcCCCchhcCCceeecCCCHHHHhhcchhhcccceeEEeecCCceEEEEEeCCCc
Confidence 456899999999999999999997431 1110 111222111 112234566788999999999
Q ss_pred ccccccccccccCCcEEEEEEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCccccc
Q 044772 81 EDYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRK 141 (159)
Q Consensus 81 ~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~ 141 (159)
..|.......+..+|++|+|+|+.+........ .| ..+.. .+.|+++++||+|...
T Consensus 97 ~~f~~~~~~al~~aD~~llVvda~~g~~~~t~~--~~-~~~~~--~~~p~ivviNKiD~~~ 152 (720)
T TIGR00490 97 VDFGGDVTRAMRAVDGAIVVVCAVEGVMPQTET--VL-RQALK--ENVKPVLFINKVDRLI 152 (720)
T ss_pred cccHHHHHHHHHhcCEEEEEEecCCCCCccHHH--HH-HHHHH--cCCCEEEEEEChhccc
Confidence 988877788899999999999987643222221 22 22211 3678899999999863
No 235
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=99.42 E-value=5e-13 Score=105.63 Aligned_cols=119 Identities=16% Similarity=0.058 Sum_probs=74.1
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccc------ceeeeeEE-------------EEEE----CC------eEE
Q 044772 20 TKFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVP------TVFDNFSA-------------NVMV----DG------RTV 70 (159)
Q Consensus 20 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~------t~~~~~~~-------------~~~~----~~------~~~ 70 (159)
...++|+++|..++|||||+++|.+... ..+.. |....+.. .+.. +. ...
T Consensus 2 ~~~~~i~iiG~~~~GKSTL~~~Lt~~~~-d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (406)
T TIGR03680 2 QPEVNIGMVGHVDHGKTTLTKALTGVWT-DTHSEELKRGISIRLGYADAEIYKCPECDGPECYTTEPVCPNCGSETELLR 80 (406)
T ss_pred CceEEEEEEccCCCCHHHHHHHHhCeec-ccCHhHHHcCceeEecccccccccccccCcccccccccccccccccccccc
Confidence 3578999999999999999999964321 11111 11111100 0000 11 135
Q ss_pred EEEEEeCCCcccccccccccccCCcEEEEEEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCcccccC
Q 044772 71 NLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKD 142 (159)
Q Consensus 71 ~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~ 142 (159)
.+.+||+||++.|...+......+|++++|+|+++........ ..+..+. .....|+++++||+|+...
T Consensus 81 ~i~liDtPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~--e~l~~l~-~~gi~~iIVvvNK~Dl~~~ 149 (406)
T TIGR03680 81 RVSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTK--EHLMALE-IIGIKNIVIVQNKIDLVSK 149 (406)
T ss_pred EEEEEECCCHHHHHHHHHHHHHHCCEEEEEEECCCCccccchH--HHHHHHH-HcCCCeEEEEEEccccCCH
Confidence 6899999999999877777778899999999998643111111 2222221 1223469999999999753
No 236
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=99.41 E-value=3e-12 Score=91.74 Aligned_cols=113 Identities=20% Similarity=0.157 Sum_probs=68.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCC-CCcc--cceeeeeEEEEEECCeEEEEEEEeCCCcccccc-----------ccc
Q 044772 23 IKCVTVRDGAVGKTCLLISYTGNTFP-TDYV--PTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNR-----------LRP 88 (159)
Q Consensus 23 ~ki~vvG~~~~GKSsli~~l~~~~~~-~~~~--~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~-----------~~~ 88 (159)
++|+++|.+|+|||||+|.+++.+.. .... +............++. .+.++||||-..... ...
T Consensus 1 ~~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~~~~~~~~~--~i~viDTPG~~d~~~~~~~~~~~i~~~~~ 78 (196)
T cd01852 1 LRLVLVGKTGAGKSATGNTILGREVFESKLSASSVTKTCQKESAVWDGR--RVNVIDTPGLFDTSVSPEQLSKEIVRCLS 78 (196)
T ss_pred CEEEEECCCCCCHHHHHHHhhCCCccccccCCCCcccccceeeEEECCe--EEEEEECcCCCCccCChHHHHHHHHHHHH
Confidence 47999999999999999999987643 2211 1111111222234443 589999999644321 112
Q ss_pred ccccCCcEEEEEEeCCChhhHHhhhhhhHHHHHhhhCC---CCCEEEEeeCccccc
Q 044772 89 LSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAP---SVPIVLVGTKLDLRK 141 (159)
Q Consensus 89 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~~---~~piilv~nK~Dl~~ 141 (159)
...++.+++++|.++.+ .+-... ..++.+.+... -.++++|.|+.|...
T Consensus 79 ~~~~g~~~illVi~~~~-~t~~d~---~~l~~l~~~fg~~~~~~~ivv~T~~d~l~ 130 (196)
T cd01852 79 LSAPGPHAFLLVVPLGR-FTEEEE---QAVETLQELFGEKVLDHTIVLFTRGDDLE 130 (196)
T ss_pred hcCCCCEEEEEEEECCC-cCHHHH---HHHHHHHHHhChHhHhcEEEEEECccccC
Confidence 23467899999999876 222222 33444444321 257888888888543
No 237
>KOG0090 consensus Signal recognition particle receptor, beta subunit (small G protein superfamily) [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.40 E-value=6.7e-13 Score=94.28 Aligned_cols=113 Identities=16% Similarity=0.159 Sum_probs=77.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccccccccc---CCcEEEE
Q 044772 23 IKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYR---GADVFIL 99 (159)
Q Consensus 23 ~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~---~~~~~i~ 99 (159)
-.|+++|+++||||+|..+|..+.+... .++++++.. ...++.. ...+.|.||+.+.+.....+++ .+.++||
T Consensus 39 ~~Vll~Gl~dSGKT~LF~qL~~gs~~~T-vtSiepn~a-~~r~gs~--~~~LVD~PGH~rlR~kl~e~~~~~~~akaiVF 114 (238)
T KOG0090|consen 39 NAVLLVGLSDSGKTSLFTQLITGSHRGT-VTSIEPNEA-TYRLGSE--NVTLVDLPGHSRLRRKLLEYLKHNYSAKAIVF 114 (238)
T ss_pred CcEEEEecCCCCceeeeeehhcCCccCe-eeeecccee-eEeecCc--ceEEEeCCCcHHHHHHHHHHccccccceeEEE
Confidence 4699999999999999999998865443 222333221 1112222 2789999999999988878877 7899999
Q ss_pred EEeCCC-hhhHHhhhhhhHHHHHhhh---CCCCCEEEEeeCcccc
Q 044772 100 AFSLIS-RPSYENISKKKWVPELRHY---APSVPIVLVGTKLDLR 140 (159)
Q Consensus 100 v~d~~~-~~s~~~~~~~~~~~~i~~~---~~~~piilv~nK~Dl~ 140 (159)
|+|... +....+..+ .++.-+... ...+|+++++||.|+.
T Consensus 115 VVDSa~f~k~vrdvae-fLydil~~~~~~~~~~~vLIaCNKqDl~ 158 (238)
T KOG0090|consen 115 VVDSATFLKNVRDVAE-FLYDILLDSRVKKNKPPVLIACNKQDLF 158 (238)
T ss_pred EEeccccchhhHHHHH-HHHHHHHhhccccCCCCEEEEecchhhh
Confidence 999752 222333332 333333333 2578999999999985
No 238
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=99.40 E-value=2.2e-12 Score=106.45 Aligned_cols=112 Identities=22% Similarity=0.194 Sum_probs=71.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC---CCCCc--ccceeeeeEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEE
Q 044772 24 KCVTVRDGAVGKTCLLISYTGNT---FPTDY--VPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADVFI 98 (159)
Q Consensus 24 ki~vvG~~~~GKSsli~~l~~~~---~~~~~--~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i 98 (159)
-|.++|+.++|||||+++|.+.. +.... ..|+...+......++ ..+.+||+||++.|.......+..+|+++
T Consensus 2 ii~~~GhvdhGKTtLi~aLtg~~~dr~~eE~~rGiTI~l~~~~~~~~~g--~~i~~IDtPGhe~fi~~m~~g~~~~D~~l 79 (614)
T PRK10512 2 IIATAGHVDHGKTTLLQAITGVNADRLPEEKKRGMTIDLGYAYWPQPDG--RVLGFIDVPGHEKFLSNMLAGVGGIDHAL 79 (614)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCccchhcccCCceEEeeeEEEecCCC--cEEEEEECCCHHHHHHHHHHHhhcCCEEE
Confidence 47889999999999999998632 22221 2233333322111123 34899999999998776667788999999
Q ss_pred EEEeCCChhhHHhhhhhhHHHHHhhhCCCCC-EEEEeeCcccccC
Q 044772 99 LAFSLISRPSYENISKKKWVPELRHYAPSVP-IVLVGTKLDLRKD 142 (159)
Q Consensus 99 ~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~p-iilv~nK~Dl~~~ 142 (159)
+|+|+++...-+.. ..+..+.. . ++| ++||+||+|+.+.
T Consensus 80 LVVda~eg~~~qT~---ehl~il~~-l-gi~~iIVVlNKiDlv~~ 119 (614)
T PRK10512 80 LVVACDDGVMAQTR---EHLAILQL-T-GNPMLTVALTKADRVDE 119 (614)
T ss_pred EEEECCCCCcHHHH---HHHHHHHH-c-CCCeEEEEEECCccCCH
Confidence 99999863222211 12222211 1 345 6899999999753
No 239
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=99.38 E-value=3.3e-12 Score=96.63 Aligned_cols=123 Identities=13% Similarity=0.151 Sum_probs=72.8
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCCC--CCcccceeeeeEEEEEECCeEEEEEEEeCCCcccccc-------ccccc
Q 044772 20 TKFIKCVTVRDGAVGKTCLLISYTGNTFP--TDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNR-------LRPLS 90 (159)
Q Consensus 20 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~-------~~~~~ 90 (159)
...++|+++|.+|+||||++|+|++.... +...+............++ ..+.++||||...... ....+
T Consensus 36 ~~~~rIllvGktGVGKSSliNsIlG~~v~~vs~f~s~t~~~~~~~~~~~G--~~l~VIDTPGL~d~~~~~e~~~~~ik~~ 113 (313)
T TIGR00991 36 VSSLTILVMGKGGVGKSSTVNSIIGERIATVSAFQSEGLRPMMVSRTRAG--FTLNIIDTPGLIEGGYINDQAVNIIKRF 113 (313)
T ss_pred ccceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECC--eEEEEEECCCCCchHHHHHHHHHHHHHH
Confidence 46789999999999999999999987642 2222111111111122333 5699999999653321 11222
Q ss_pred c--cCCcEEEEEEeCCChhhHHhhhhhhHHHHHhhhCC---CCCEEEEeeCcccccCcccc
Q 044772 91 Y--RGADVFILAFSLISRPSYENISKKKWVPELRHYAP---SVPIVLVGTKLDLRKDRQFH 146 (159)
Q Consensus 91 ~--~~~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~~---~~piilv~nK~Dl~~~r~v~ 146 (159)
+ ...|++++|..++.. .+...+. ..++.+..... -.+.+|+.|+.|.......+
T Consensus 114 l~~~g~DvVLyV~rLD~~-R~~~~Dk-qlLk~Iqe~FG~~iw~~~IVVfTh~d~~~pd~~~ 172 (313)
T TIGR00991 114 LLGKTIDVLLYVDRLDAY-RVDTLDG-QVIRAITDSFGKDIWRKSLVVLTHAQFSPPDGLE 172 (313)
T ss_pred hhcCCCCEEEEEeccCcc-cCCHHHH-HHHHHHHHHhhhhhhccEEEEEECCccCCCCCCC
Confidence 2 258899999766532 2333322 44444444431 35689999999965433333
No 240
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.38 E-value=2.8e-12 Score=101.05 Aligned_cols=117 Identities=21% Similarity=0.163 Sum_probs=73.6
Q ss_pred cceeeEEEEEcCCCCCHHHHHHHHhcCCC------------CCC-----cccceeeeeEEEEEECCeEEEEEEEeCCCcc
Q 044772 19 ATKFIKCVTVRDGAVGKTCLLISYTGNTF------------PTD-----YVPTVFDNFSANVMVDGRTVNLGLWDTAGQE 81 (159)
Q Consensus 19 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~------------~~~-----~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~ 81 (159)
....++|+++|+.++|||||+.+|++... ... .+...-+ .....+......+.+||+||++
T Consensus 9 ~~~~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~--~~~~~~~~~~~~~~liDtpGh~ 86 (394)
T TIGR00485 9 TKPHVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITIN--TAHVEYETENRHYAHVDCPGHA 86 (394)
T ss_pred CCceEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCccee--eEEEEEcCCCEEEEEEECCchH
Confidence 35678999999999999999999974310 000 0111111 1122333344568999999999
Q ss_pred cccccccccccCCcEEEEEEeCCChhhHHhhhhhhHHHHHhhhCCCCCE-EEEeeCcccccC
Q 044772 82 DYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPI-VLVGTKLDLRKD 142 (159)
Q Consensus 82 ~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~pi-ilv~nK~Dl~~~ 142 (159)
.|..........+|++++|+|+.+....... ..+..+.. .++|. +++.||+|+.+.
T Consensus 87 ~f~~~~~~~~~~~D~~ilVvda~~g~~~qt~---e~l~~~~~--~gi~~iIvvvNK~Dl~~~ 143 (394)
T TIGR00485 87 DYVKNMITGAAQMDGAILVVSATDGPMPQTR---EHILLARQ--VGVPYIVVFLNKCDMVDD 143 (394)
T ss_pred HHHHHHHHHHhhCCEEEEEEECCCCCcHHHH---HHHHHHHH--cCCCEEEEEEEecccCCH
Confidence 8876555556788999999999863222221 22222222 25675 468999998653
No 241
>PRK12736 elongation factor Tu; Reviewed
Probab=99.38 E-value=3e-12 Score=100.85 Aligned_cols=118 Identities=20% Similarity=0.167 Sum_probs=74.2
Q ss_pred cceeeEEEEEcCCCCCHHHHHHHHhcCCCCC---C---cc---c-----ceeeee-EEEEEECCeEEEEEEEeCCCcccc
Q 044772 19 ATKFIKCVTVRDGAVGKTCLLISYTGNTFPT---D---YV---P-----TVFDNF-SANVMVDGRTVNLGLWDTAGQEDY 83 (159)
Q Consensus 19 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~---~---~~---~-----t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~ 83 (159)
....++|+++|+.++|||||+.+|++..... . +. . ..+.+. .....+......+.++|+||++.|
T Consensus 9 ~k~~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~~~~~~~~i~~iDtPGh~~f 88 (394)
T PRK12736 9 SKPHVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINTAHVEYETEKRHYAHVDCPGHADY 88 (394)
T ss_pred CCCeeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEEEeeEecCCCcEEEEEECCCHHHH
Confidence 3457899999999999999999998531100 0 00 0 001100 111223333456889999999888
Q ss_pred cccccccccCCcEEEEEEeCCChhhHHhhhhhhHHHHHhhhCCCCC-EEEEeeCccccc
Q 044772 84 NRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVP-IVLVGTKLDLRK 141 (159)
Q Consensus 84 ~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~p-iilv~nK~Dl~~ 141 (159)
.......+..+|++++|+|+.+...-... .++..+.. .++| ++++.||+|+.+
T Consensus 89 ~~~~~~~~~~~d~~llVvd~~~g~~~~t~---~~~~~~~~--~g~~~~IvviNK~D~~~ 142 (394)
T PRK12736 89 VKNMITGAAQMDGAILVVAATDGPMPQTR---EHILLARQ--VGVPYLVVFLNKVDLVD 142 (394)
T ss_pred HHHHHHHHhhCCEEEEEEECCCCCchhHH---HHHHHHHH--cCCCEEEEEEEecCCcc
Confidence 76555666789999999998863222221 22232322 2577 688999999874
No 242
>smart00275 G_alpha G protein alpha subunit. Subunit of G proteins that contains the guanine nucleotide binding site
Probab=99.37 E-value=1.6e-12 Score=100.45 Aligned_cols=72 Identities=14% Similarity=0.242 Sum_probs=57.3
Q ss_pred EEEEEEeCCCcccccccccccccCCcEEEEEEeCCCh----------hhHHhhhhhhHHHHHhhhC--CCCCEEEEeeCc
Q 044772 70 VNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISR----------PSYENISKKKWVPELRHYA--PSVPIVLVGTKL 137 (159)
Q Consensus 70 ~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~----------~s~~~~~~~~~~~~i~~~~--~~~piilv~nK~ 137 (159)
+.+.+||.+|+...+..|.+++.+++++|||+|+++- ..+.+.. ..++.+.... .+.|++|++||.
T Consensus 184 ~~~~~~DvgGqr~~R~kW~~~f~~v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl--~~f~~l~~~~~~~~~piil~~NK~ 261 (342)
T smart00275 184 LFFRMFDVGGQRSERKKWIHCFDNVTAIIFCVALSEYDQVLEEDESTNRMQESL--NLFESICNSRWFANTSIILFLNKI 261 (342)
T ss_pred eEEEEEecCCchhhhhhHHHHhCCCCEEEEEEECcccccchhccCcchHHHHHH--HHHHHHHcCccccCCcEEEEEecH
Confidence 5688999999999999999999999999999999963 3455444 4555555432 589999999999
Q ss_pred ccccCc
Q 044772 138 DLRKDR 143 (159)
Q Consensus 138 Dl~~~r 143 (159)
|+..++
T Consensus 262 D~~~~K 267 (342)
T smart00275 262 DLFEEK 267 (342)
T ss_pred HhHHHH
Confidence 987544
No 243
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=99.37 E-value=2.9e-12 Score=102.99 Aligned_cols=120 Identities=17% Similarity=0.062 Sum_probs=73.1
Q ss_pred CcceeeEEEEEcCCCCCHHHHHHHHhcCCC-CCCc-----------ccce-------------------eeee-EEEEEE
Q 044772 18 TATKFIKCVTVRDGAVGKTCLLISYTGNTF-PTDY-----------VPTV-------------------FDNF-SANVMV 65 (159)
Q Consensus 18 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~-~~~~-----------~~t~-------------------~~~~-~~~~~~ 65 (159)
.....++|+++|+.++|||||+.+|+...- .... ..+. +.+. ......
T Consensus 23 ~~~~~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~~ 102 (474)
T PRK05124 23 QHKSLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYF 102 (474)
T ss_pred cccCceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEEe
Confidence 345679999999999999999999984431 1100 0000 0000 011112
Q ss_pred CCeEEEEEEEeCCCcccccccccccccCCcEEEEEEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCccccc
Q 044772 66 DGRTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRK 141 (159)
Q Consensus 66 ~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~ 141 (159)
.....++.++|+||++.|.......+..+|++++|+|+.....-.... .+. .+.. ....|++|+.||+|+.+
T Consensus 103 ~~~~~~i~~iDTPGh~~f~~~~~~~l~~aD~allVVDa~~G~~~qt~~--~~~-l~~~-lg~~~iIvvvNKiD~~~ 174 (474)
T PRK05124 103 STEKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQTRR--HSF-IATL-LGIKHLVVAVNKMDLVD 174 (474)
T ss_pred ccCCcEEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccccchH--HHH-HHHH-hCCCceEEEEEeecccc
Confidence 233456899999999888655455578999999999987542211111 111 1111 11247899999999874
No 244
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=99.37 E-value=6.4e-12 Score=91.88 Aligned_cols=112 Identities=17% Similarity=0.119 Sum_probs=71.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCcccc-----------------------eeeeeE----------------EEEE
Q 044772 24 KCVTVRDGAVGKTCLLISYTGNTFPTDYVPT-----------------------VFDNFS----------------ANVM 64 (159)
Q Consensus 24 ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t-----------------------~~~~~~----------------~~~~ 64 (159)
||+++|+.++|||||+.+|..+.+....... .+.... ..+.
T Consensus 1 ~v~~~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~E~~~g~t~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 80 (224)
T cd04165 1 RVAVVGNVDAGKSTLLGVLTQGELDNGRGKARLNLFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHLSESDIEICE 80 (224)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCcCCCCCeEEeehhhhhhhhhcCchhhhhhhhcccCCCCceecCCCCccccccceeee
Confidence 6899999999999999999977664321100 000000 0001
Q ss_pred ECCeEEEEEEEeCCCccccccccccccc--CCcEEEEEEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCcccccC
Q 044772 65 VDGRTVNLGLWDTAGQEDYNRLRPLSYR--GADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKD 142 (159)
Q Consensus 65 ~~~~~~~~~i~D~~g~~~~~~~~~~~~~--~~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~ 142 (159)
. ....+.+.|+||++.|.......+. .+|++++|+|+.....-... .++..+.. .++|+++|.||+|+...
T Consensus 81 ~--~~~~i~liDtpG~~~~~~~~~~~~~~~~~D~~llVvda~~g~~~~d~---~~l~~l~~--~~ip~ivvvNK~D~~~~ 153 (224)
T cd04165 81 K--SSKLVTFIDLAGHERYLKTTLFGLTGYAPDYAMLVVAANAGIIGMTK---EHLGLALA--LNIPVFVVVTKIDLAPA 153 (224)
T ss_pred e--CCcEEEEEECCCcHHHHHHHHHhhcccCCCEEEEEEECCCCCcHHHH---HHHHHHHH--cCCCEEEEEECccccCH
Confidence 1 1245889999999888654444443 68999999998764332222 33443333 35899999999998543
No 245
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=99.37 E-value=2.3e-12 Score=102.00 Aligned_cols=119 Identities=18% Similarity=0.082 Sum_probs=71.8
Q ss_pred cceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcc------cceeeeeEE-E------------EE----EC--C----eE
Q 044772 19 ATKFIKCVTVRDGAVGKTCLLISYTGNTFPTDYV------PTVFDNFSA-N------------VM----VD--G----RT 69 (159)
Q Consensus 19 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~------~t~~~~~~~-~------------~~----~~--~----~~ 69 (159)
....++|+++|+.++|||||+.+|.+.. ...+. -|....+.. . .. .+ + ..
T Consensus 6 ~~~~~ni~v~Gh~d~GKSTL~~~L~~~~-~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (411)
T PRK04000 6 VQPEVNIGMVGHVDHGKTTLVQALTGVW-TDRHSEELKRGITIRLGYADATIRKCPDCEEPEAYTTEPKCPNCGSETELL 84 (411)
T ss_pred CCCcEEEEEEccCCCCHHHHHHHhhCee-cccCHhHHhcCcEEEecccccccccccccCccccccccccccccccccccc
Confidence 4566999999999999999999986431 11111 111111100 0 00 00 0 12
Q ss_pred EEEEEEeCCCcccccccccccccCCcEEEEEEeCCChh-hHHhhhhhhHHHHHhhhCCCCCEEEEeeCcccccC
Q 044772 70 VNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISRP-SYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKD 142 (159)
Q Consensus 70 ~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~-s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~ 142 (159)
..+.+||+||++.|..........+|++++|+|+.++. ...... .+ ..+.. ....|+++|+||+|+.+.
T Consensus 85 ~~i~liDtPG~~~f~~~~~~~~~~~D~~llVVDa~~~~~~~~t~~--~l-~~l~~-~~i~~iiVVlNK~Dl~~~ 154 (411)
T PRK04000 85 RRVSFVDAPGHETLMATMLSGAALMDGAILVIAANEPCPQPQTKE--HL-MALDI-IGIKNIVIVQNKIDLVSK 154 (411)
T ss_pred cEEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCCChhHHH--HH-HHHHH-cCCCcEEEEEEeeccccc
Confidence 57899999999887665555556789999999998643 111111 11 11111 122469999999999653
No 246
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=99.36 E-value=6.6e-12 Score=93.11 Aligned_cols=119 Identities=14% Similarity=0.092 Sum_probs=71.8
Q ss_pred CcceeeEEEEEcCCCCCHHHHHHHHhcCCCCC--CcccceeeeeEEEEEECCeEEEEEEEeCCCccccc--c--------
Q 044772 18 TATKFIKCVTVRDGAVGKTCLLISYTGNTFPT--DYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYN--R-------- 85 (159)
Q Consensus 18 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~--~-------- 85 (159)
.....++|+|+|.+|||||||+|.|++..... ...++...........++ ..+.+|||||-.... .
T Consensus 27 ~~~~~~~IllvG~tGvGKSSliNaLlg~~~~~v~~~~~~T~~~~~~~~~~~g--~~i~vIDTPGl~~~~~~~~~~~~~~~ 104 (249)
T cd01853 27 ELDFSLTILVLGKTGVGKSSTINSIFGERKAATSAFQSETLRVREVSGTVDG--FKLNIIDTPGLLESVMDQRVNRKILS 104 (249)
T ss_pred hccCCeEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECC--eEEEEEECCCcCcchhhHHHHHHHHH
Confidence 44567899999999999999999999876432 222222111112222334 468999999965431 1
Q ss_pred ccccccc--CCcEEEEEEeCCChhhHHhhhhhhHHHHHhhhCC---CCCEEEEeeCcccc
Q 044772 86 LRPLSYR--GADVFILAFSLISRPSYENISKKKWVPELRHYAP---SVPIVLVGTKLDLR 140 (159)
Q Consensus 86 ~~~~~~~--~~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~~---~~piilv~nK~Dl~ 140 (159)
....++. ..+++++|..++.. .+...+. ..++.+..... -.++++|.||+|..
T Consensus 105 ~I~~~l~~~~idvIL~V~rlD~~-r~~~~d~-~llk~I~e~fG~~i~~~~ivV~T~~d~~ 162 (249)
T cd01853 105 SIKRYLKKKTPDVVLYVDRLDMY-RRDYLDL-PLLRAITDSFGPSIWRNAIVVLTHAASS 162 (249)
T ss_pred HHHHHHhccCCCEEEEEEcCCCC-CCCHHHH-HHHHHHHHHhChhhHhCEEEEEeCCccC
Confidence 0122333 46777787666543 2333322 44444444332 25799999999974
No 247
>CHL00071 tufA elongation factor Tu
Probab=99.36 E-value=5.9e-12 Score=99.64 Aligned_cols=118 Identities=20% Similarity=0.135 Sum_probs=74.8
Q ss_pred cceeeEEEEEcCCCCCHHHHHHHHhcCCCCC------Ccccc--------eeeee-EEEEEECCeEEEEEEEeCCCcccc
Q 044772 19 ATKFIKCVTVRDGAVGKTCLLISYTGNTFPT------DYVPT--------VFDNF-SANVMVDGRTVNLGLWDTAGQEDY 83 (159)
Q Consensus 19 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~------~~~~t--------~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~ 83 (159)
....++|+++|++++|||||+++|++..-.. .+... .+.+. .....+.....++.+.|+||+..|
T Consensus 9 ~~~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~~iDtPGh~~~ 88 (409)
T CHL00071 9 KKPHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHVEYETENRHYAHVDCPGHADY 88 (409)
T ss_pred CCCeEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccEEEEccCCeEEEEEECCChHHH
Confidence 4566899999999999999999999642110 00000 00000 011122233346789999999877
Q ss_pred cccccccccCCcEEEEEEeCCChhhHHhhhhhhHHHHHhhhCCCCC-EEEEeeCccccc
Q 044772 84 NRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVP-IVLVGTKLDLRK 141 (159)
Q Consensus 84 ~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~p-iilv~nK~Dl~~ 141 (159)
.......+..+|++++|+|+.....-+.. ..+..+.. .++| ++++.||+|+.+
T Consensus 89 ~~~~~~~~~~~D~~ilVvda~~g~~~qt~---~~~~~~~~--~g~~~iIvvvNK~D~~~ 142 (409)
T CHL00071 89 VKNMITGAAQMDGAILVVSAADGPMPQTK---EHILLAKQ--VGVPNIVVFLNKEDQVD 142 (409)
T ss_pred HHHHHHHHHhCCEEEEEEECCCCCcHHHH---HHHHHHHH--cCCCEEEEEEEccCCCC
Confidence 66656667889999999998854322211 23333322 2578 778999999975
No 248
>PRK12735 elongation factor Tu; Reviewed
Probab=99.36 E-value=6.3e-12 Score=99.10 Aligned_cols=117 Identities=19% Similarity=0.144 Sum_probs=73.0
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCC-------CCC-Cccc-c-----eeeee-EEEEEECCeEEEEEEEeCCCccccc
Q 044772 20 TKFIKCVTVRDGAVGKTCLLISYTGNT-------FPT-DYVP-T-----VFDNF-SANVMVDGRTVNLGLWDTAGQEDYN 84 (159)
Q Consensus 20 ~~~~ki~vvG~~~~GKSsli~~l~~~~-------~~~-~~~~-t-----~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~ 84 (159)
...++|+++|+.++|||||+++|++.. +.. .... + .+.+. .....+.....++.++|+||+..|.
T Consensus 10 ~~~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~~~~~~i~~iDtPGh~~f~ 89 (396)
T PRK12735 10 KPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVEYETANRHYAHVDCPGHADYV 89 (396)
T ss_pred CCeEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEeeeEEcCCCcEEEEEECCCHHHHH
Confidence 456899999999999999999998621 100 0000 0 01100 1112233334568999999998876
Q ss_pred ccccccccCCcEEEEEEeCCChhhHHhhhhhhHHHHHhhhCCCCCEE-EEeeCccccc
Q 044772 85 RLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIV-LVGTKLDLRK 141 (159)
Q Consensus 85 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~pii-lv~nK~Dl~~ 141 (159)
......+..+|++++|+|+.+...-... .++..+.. .++|.+ ++.||+|+.+
T Consensus 90 ~~~~~~~~~aD~~llVvda~~g~~~qt~---e~l~~~~~--~gi~~iivvvNK~Dl~~ 142 (396)
T PRK12735 90 KNMITGAAQMDGAILVVSAADGPMPQTR---EHILLARQ--VGVPYIVVFLNKCDMVD 142 (396)
T ss_pred HHHHhhhccCCEEEEEEECCCCCchhHH---HHHHHHHH--cCCCeEEEEEEecCCcc
Confidence 6556667889999999999864322211 23333322 257755 6799999964
No 249
>PRK12739 elongation factor G; Reviewed
Probab=99.35 E-value=8.9e-12 Score=104.39 Aligned_cols=115 Identities=16% Similarity=0.048 Sum_probs=77.2
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCCC-CC------------------cccceeeeeEEEEEECCeEEEEEEEeCCCc
Q 044772 20 TKFIKCVTVRDGAVGKTCLLISYTGNTFP-TD------------------YVPTVFDNFSANVMVDGRTVNLGLWDTAGQ 80 (159)
Q Consensus 20 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~-~~------------------~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~ 80 (159)
.+..+|+++|+.++|||||+++|+...-. .. .+...-......+.. ...++.++||||+
T Consensus 6 ~~irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~--~~~~i~liDTPG~ 83 (691)
T PRK12739 6 EKTRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFW--KGHRINIIDTPGH 83 (691)
T ss_pred cCeeEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEE--CCEEEEEEcCCCH
Confidence 46789999999999999999999742110 00 000000101112222 3356899999999
Q ss_pred ccccccccccccCCcEEEEEEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCccccc
Q 044772 81 EDYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRK 141 (159)
Q Consensus 81 ~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~ 141 (159)
..|...+...+..+|++|+|+|+.+...-... ..+..+.. .++|++++.||+|+..
T Consensus 84 ~~f~~e~~~al~~~D~~ilVvDa~~g~~~qt~---~i~~~~~~--~~~p~iv~iNK~D~~~ 139 (691)
T PRK12739 84 VDFTIEVERSLRVLDGAVAVFDAVSGVEPQSE---TVWRQADK--YGVPRIVFVNKMDRIG 139 (691)
T ss_pred HHHHHHHHHHHHHhCeEEEEEeCCCCCCHHHH---HHHHHHHH--cCCCEEEEEECCCCCC
Confidence 88877788889999999999998865332222 33333332 3589999999999875
No 250
>KOG3886 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=99.34 E-value=1.3e-12 Score=94.04 Aligned_cols=119 Identities=24% Similarity=0.329 Sum_probs=84.4
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCCCCC---cccceeeeeEEEEEECCeEEEEEEEeCCCcccc-----ccccccccc
Q 044772 21 KFIKCVTVRDGAVGKTCLLISYTGNTFPTD---YVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDY-----NRLRPLSYR 92 (159)
Q Consensus 21 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~---~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~-----~~~~~~~~~ 92 (159)
...||+++|.+|+|||||-.-++.+....+ ..+|+..+.+ ++.+-|. +.+++||++|++.+ ....+..+.
T Consensus 3 ~~kKvlLMGrsGsGKsSmrsiiF~ny~a~D~~rlg~tidveHs-h~RflGn-l~LnlwDcGgqe~fmen~~~~q~d~iF~ 80 (295)
T KOG3886|consen 3 MKKKVLLMGRSGSGKSSMRSIIFANYIARDTRRLGATIDVEHS-HVRFLGN-LVLNLWDCGGQEEFMENYLSSQEDNIFR 80 (295)
T ss_pred ccceEEEeccCCCCccccchhhhhhhhhhhhhccCCcceeeeh-hhhhhhh-heeehhccCCcHHHHHHHHhhcchhhhe
Confidence 457999999999999999766664443211 2233333222 2222332 45999999999843 234567789
Q ss_pred CCcEEEEEEeCCChhhHHhhhh-hhHHHHHhhhCCCCCEEEEeeCccccc
Q 044772 93 GADVFILAFSLISRPSYENISK-KKWVPELRHYAPSVPIVLVGTKLDLRK 141 (159)
Q Consensus 93 ~~~~~i~v~d~~~~~s~~~~~~-~~~~~~i~~~~~~~piilv~nK~Dl~~ 141 (159)
+.++++++||+...+-..++.. +..++.+.++.+...+.+..+|.|+..
T Consensus 81 nV~vli~vFDves~e~~~D~~~yqk~Le~ll~~SP~AkiF~l~hKmDLv~ 130 (295)
T KOG3886|consen 81 NVQVLIYVFDVESREMEKDFHYYQKCLEALLQNSPEAKIFCLLHKMDLVQ 130 (295)
T ss_pred eheeeeeeeeccchhhhhhHHHHHHHHHHHHhcCCcceEEEEEeechhcc
Confidence 9999999999998876666553 356778888888999999999999853
No 251
>PLN03126 Elongation factor Tu; Provisional
Probab=99.34 E-value=8.3e-12 Score=100.26 Aligned_cols=118 Identities=20% Similarity=0.150 Sum_probs=75.4
Q ss_pred cceeeEEEEEcCCCCCHHHHHHHHhcCC------CCCCcc---cce-----eeee-EEEEEECCeEEEEEEEeCCCcccc
Q 044772 19 ATKFIKCVTVRDGAVGKTCLLISYTGNT------FPTDYV---PTV-----FDNF-SANVMVDGRTVNLGLWDTAGQEDY 83 (159)
Q Consensus 19 ~~~~~ki~vvG~~~~GKSsli~~l~~~~------~~~~~~---~t~-----~~~~-~~~~~~~~~~~~~~i~D~~g~~~~ 83 (159)
....++|+++|+.++|||||+++|+... ....+. .+. +... .....+......+.++|+||++.|
T Consensus 78 ~k~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~~~i~liDtPGh~~f 157 (478)
T PLN03126 78 KKPHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHADY 157 (478)
T ss_pred cCCeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEecCCcEEEEEECCCHHHH
Confidence 4457899999999999999999998521 111110 000 0000 011112223346899999999988
Q ss_pred cccccccccCCcEEEEEEeCCChhhHHhhhhhhHHHHHhhhCCCCC-EEEEeeCccccc
Q 044772 84 NRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVP-IVLVGTKLDLRK 141 (159)
Q Consensus 84 ~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~p-iilv~nK~Dl~~ 141 (159)
.......+..+|++++|+|+.+...-... .++..+.. .++| ++++.||+|+..
T Consensus 158 ~~~~~~g~~~aD~ailVVda~~G~~~qt~---e~~~~~~~--~gi~~iIvvvNK~Dl~~ 211 (478)
T PLN03126 158 VKNMITGAAQMDGAILVVSGADGPMPQTK---EHILLAKQ--VGVPNMVVFLNKQDQVD 211 (478)
T ss_pred HHHHHHHHhhCCEEEEEEECCCCCcHHHH---HHHHHHHH--cCCCeEEEEEecccccC
Confidence 77666677889999999998864322222 33333332 2577 788999999864
No 252
>COG3596 Predicted GTPase [General function prediction only]
Probab=99.33 E-value=2e-12 Score=95.37 Aligned_cols=117 Identities=18% Similarity=0.201 Sum_probs=83.5
Q ss_pred cceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCc---ccceeeeeEEEEEECCeEEEEEEEeCCCccc-------cccccc
Q 044772 19 ATKFIKCVTVRDGAVGKTCLLISYTGNTFPTDY---VPTVFDNFSANVMVDGRTVNLGLWDTAGQED-------YNRLRP 88 (159)
Q Consensus 19 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~---~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~-------~~~~~~ 88 (159)
...+++++++|..|+|||||+|.|+.+...+.. ..+....+ ....++++ .+.+||+||.++ +.....
T Consensus 36 ~~~pvnvLi~G~TG~GKSSliNALF~~~~~~v~~vg~~t~~~~~-~~~~~~~~--~l~lwDtPG~gdg~~~D~~~r~~~~ 112 (296)
T COG3596 36 EKEPVNVLLMGATGAGKSSLINALFQGEVKEVSKVGVGTDITTR-LRLSYDGE--NLVLWDTPGLGDGKDKDAEHRQLYR 112 (296)
T ss_pred ccCceeEEEecCCCCcHHHHHHHHHhccCceeeecccCCCchhh-HHhhcccc--ceEEecCCCcccchhhhHHHHHHHH
Confidence 457789999999999999999999965543221 11111111 12234443 389999999665 555667
Q ss_pred ccccCCcEEEEEEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCccccc
Q 044772 89 LSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRK 141 (159)
Q Consensus 89 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~ 141 (159)
.++...|.++++.+..|+ +...++ +++..+....-+.+++++.|-+|...
T Consensus 113 d~l~~~DLvL~l~~~~dr--aL~~d~-~f~~dVi~~~~~~~~i~~VtQ~D~a~ 162 (296)
T COG3596 113 DYLPKLDLVLWLIKADDR--ALGTDE-DFLRDVIILGLDKRVLFVVTQADRAE 162 (296)
T ss_pred HHhhhccEEEEeccCCCc--cccCCH-HHHHHHHHhccCceeEEEEehhhhhc
Confidence 788999988888998865 555555 77777766665689999999999754
No 253
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=99.31 E-value=2.2e-11 Score=99.24 Aligned_cols=122 Identities=16% Similarity=0.207 Sum_probs=85.9
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCCC-CCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccc------ccccc--
Q 044772 21 KFIKCVTVRDGAVGKTCLLISYTGNTFP-TDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRL------RPLSY-- 91 (159)
Q Consensus 21 ~~~ki~vvG~~~~GKSsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~------~~~~~-- 91 (159)
+..+++++|+||||||||.|+|.+.+.. .++...+-+.........+.. +++.|+||--.+... -++|+
T Consensus 2 ~~~~valvGNPNvGKTtlFN~LTG~~q~VgNwpGvTVEkkeg~~~~~~~~--i~ivDLPG~YSL~~~S~DE~Var~~ll~ 79 (653)
T COG0370 2 KKLTVALVGNPNVGKTTLFNALTGANQKVGNWPGVTVEKKEGKLKYKGHE--IEIVDLPGTYSLTAYSEDEKVARDFLLE 79 (653)
T ss_pred CcceEEEecCCCccHHHHHHHHhccCceecCCCCeeEEEEEEEEEecCce--EEEEeCCCcCCCCCCCchHHHHHHHHhc
Confidence 3467999999999999999999987754 555555444344455555544 899999996544322 23343
Q ss_pred cCCcEEEEEEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCcccccCccccccCCC
Q 044772 92 RGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKDRQFHLDYPG 151 (159)
Q Consensus 92 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~r~v~~~~~~ 151 (159)
.+.|.+|-|.|.++.+.=..+.. ++++ -+.|++++.|++|..+++.+..+..+
T Consensus 80 ~~~D~ivnVvDAtnLeRnLyltl-QLlE------~g~p~ilaLNm~D~A~~~Gi~ID~~~ 132 (653)
T COG0370 80 GKPDLIVNVVDATNLERNLYLTL-QLLE------LGIPMILALNMIDEAKKRGIRIDIEK 132 (653)
T ss_pred CCCCEEEEEcccchHHHHHHHHH-HHHH------cCCCeEEEeccHhhHHhcCCcccHHH
Confidence 35799999999998765443331 2222 26899999999999998888876543
No 254
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=99.28 E-value=6e-11 Score=94.98 Aligned_cols=126 Identities=23% Similarity=0.290 Sum_probs=92.3
Q ss_pred CCCCcceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeee-EEEEEECCeEEEEEEEeCCCcccccccccccccC
Q 044772 15 TTTTATKFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNF-SANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRG 93 (159)
Q Consensus 15 ~~~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~ 93 (159)
......+.+++.++|+.++|||.|++.|+++.+..++..+....+ ...+...+....+.+.|++-. ... .....=..
T Consensus 418 ~~~~~R~Vf~C~V~G~k~~GKs~lL~sflgr~~~~~~~~~~~~~~avn~v~~~g~~k~LiL~ei~~~-~~~-~l~~ke~~ 495 (625)
T KOG1707|consen 418 KKQTDRKVFQCFVVGPKNCGKSALLQSFLGRSMSDNNTGTTKPRYAVNSVEVKGQQKYLILREIGED-DQD-FLTSKEAA 495 (625)
T ss_pred cccccceeeeEEEEcCCcCchHHHHHHHhccccccccccCCCCceeeeeeeeccccceEEEeecCcc-ccc-cccCccce
Confidence 345667888999999999999999999999998877767666655 345556677777888888753 111 11111178
Q ss_pred CcEEEEEEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCcccccCccc
Q 044772 94 ADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKDRQF 145 (159)
Q Consensus 94 ~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~r~v 145 (159)
||+++++||.+++.+|..+. ..+. +.....+.||++|++|+|+.+..|.
T Consensus 496 cDv~~~~YDsS~p~sf~~~a--~v~~-~~~~~~~~Pc~~va~K~dlDe~~Q~ 544 (625)
T KOG1707|consen 496 CDVACLVYDSSNPRSFEYLA--EVYN-KYFDLYKIPCLMVATKADLDEVPQR 544 (625)
T ss_pred eeeEEEecccCCchHHHHHH--HHHH-HhhhccCCceEEEeeccccchhhhc
Confidence 99999999999999998775 2222 2222258999999999999876543
No 255
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=99.27 E-value=1.4e-11 Score=97.44 Aligned_cols=115 Identities=17% Similarity=0.071 Sum_probs=70.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCC-CC------------cccc------------e------eeee-EEEEEECCeEE
Q 044772 23 IKCVTVRDGAVGKTCLLISYTGNTFP-TD------------YVPT------------V------FDNF-SANVMVDGRTV 70 (159)
Q Consensus 23 ~ki~vvG~~~~GKSsli~~l~~~~~~-~~------------~~~t------------~------~~~~-~~~~~~~~~~~ 70 (159)
++|+++|+.++|||||+.+|+...-. .. ...+ . +.+. .....+.....
T Consensus 1 ~~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~~~~~ 80 (406)
T TIGR02034 1 LRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFSTDKR 80 (406)
T ss_pred CeEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEccCCe
Confidence 48999999999999999999743211 10 0000 0 0000 00111222335
Q ss_pred EEEEEeCCCcccccccccccccCCcEEEEEEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCccccc
Q 044772 71 NLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRK 141 (159)
Q Consensus 71 ~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~ 141 (159)
++.++|+||++.|.......+..+|++++|+|+.....-+... .|. .+.. ....+++++.||+|+.+
T Consensus 81 ~~~liDtPGh~~f~~~~~~~~~~aD~allVVda~~G~~~qt~~--~~~-~~~~-~~~~~iivviNK~D~~~ 147 (406)
T TIGR02034 81 KFIVADTPGHEQYTRNMATGASTADLAVLLVDARKGVLEQTRR--HSY-IASL-LGIRHVVLAVNKMDLVD 147 (406)
T ss_pred EEEEEeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCCccccHH--HHH-HHHH-cCCCcEEEEEEeccccc
Confidence 6899999999988765556788999999999987543222111 111 1111 12346899999999864
No 256
>PRK00007 elongation factor G; Reviewed
Probab=99.27 E-value=2.3e-11 Score=101.99 Aligned_cols=116 Identities=13% Similarity=0.059 Sum_probs=76.0
Q ss_pred cceeeEEEEEcCCCCCHHHHHHHHhc--CCCCC--C---------------cccceeeeeEEEEEECCeEEEEEEEeCCC
Q 044772 19 ATKFIKCVTVRDGAVGKTCLLISYTG--NTFPT--D---------------YVPTVFDNFSANVMVDGRTVNLGLWDTAG 79 (159)
Q Consensus 19 ~~~~~ki~vvG~~~~GKSsli~~l~~--~~~~~--~---------------~~~t~~~~~~~~~~~~~~~~~~~i~D~~g 79 (159)
..+..+|+++|+.++|||||+++|+. +.... . .+...-......+... ...+++.||||
T Consensus 7 ~~~Irni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~~--~~~~~liDTPG 84 (693)
T PRK00007 7 LERYRNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWK--DHRINIIDTPG 84 (693)
T ss_pred ccceeEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEEC--CeEEEEEeCCC
Confidence 34678999999999999999999973 21110 0 0001011111122223 35699999999
Q ss_pred cccccccccccccCCcEEEEEEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCccccc
Q 044772 80 QEDYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRK 141 (159)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~ 141 (159)
+..|.......+..+|++|+|+|.......+.. ..+..+.. .+.|++++.||+|+.+
T Consensus 85 ~~~f~~ev~~al~~~D~~vlVvda~~g~~~qt~---~~~~~~~~--~~~p~iv~vNK~D~~~ 141 (693)
T PRK00007 85 HVDFTIEVERSLRVLDGAVAVFDAVGGVEPQSE---TVWRQADK--YKVPRIAFVNKMDRTG 141 (693)
T ss_pred cHHHHHHHHHHHHHcCEEEEEEECCCCcchhhH---HHHHHHHH--cCCCEEEEEECCCCCC
Confidence 987766666778899999999998755333332 22233332 3589999999999874
No 257
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=99.26 E-value=1.7e-11 Score=83.03 Aligned_cols=97 Identities=22% Similarity=0.181 Sum_probs=63.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccc----ccccccccccCCcEEE
Q 044772 23 IKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQED----YNRLRPLSYRGADVFI 98 (159)
Q Consensus 23 ~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~----~~~~~~~~~~~~~~~i 98 (159)
.||++||+.|+|||||+++|.+.... |..|... .+. =.+.|+||.-. +.......-.+++.++
T Consensus 2 krimliG~~g~GKTTL~q~L~~~~~~--~~KTq~i------~~~-----~~~IDTPGEyiE~~~~y~aLi~ta~dad~V~ 68 (143)
T PF10662_consen 2 KRIMLIGPSGSGKTTLAQALNGEEIR--YKKTQAI------EYY-----DNTIDTPGEYIENPRFYHALIVTAQDADVVL 68 (143)
T ss_pred ceEEEECCCCCCHHHHHHHHcCCCCC--cCcccee------Eec-----ccEEECChhheeCHHHHHHHHHHHhhCCEEE
Confidence 48999999999999999999886643 2222221 111 23589998522 2222223345899999
Q ss_pred EEEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCcccc
Q 044772 99 LAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLR 140 (159)
Q Consensus 99 ~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~ 140 (159)
++.|.+++.+.-.- .+...+ +.|+|=|.||+|+.
T Consensus 69 ll~dat~~~~~~pP---~fa~~f-----~~pvIGVITK~Dl~ 102 (143)
T PF10662_consen 69 LLQDATEPRSVFPP---GFASMF-----NKPVIGVITKIDLP 102 (143)
T ss_pred EEecCCCCCccCCc---hhhccc-----CCCEEEEEECccCc
Confidence 99999986542111 122111 47999999999998
No 258
>PLN03127 Elongation factor Tu; Provisional
Probab=99.26 E-value=5e-11 Score=95.19 Aligned_cols=115 Identities=20% Similarity=0.171 Sum_probs=72.1
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcC------CCCCCc-----------ccceeeeeEEEEEECCeEEEEEEEeCCCccc
Q 044772 20 TKFIKCVTVRDGAVGKTCLLISYTGN------TFPTDY-----------VPTVFDNFSANVMVDGRTVNLGLWDTAGQED 82 (159)
Q Consensus 20 ~~~~ki~vvG~~~~GKSsli~~l~~~------~~~~~~-----------~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~ 82 (159)
...++|+++|+.++|||||+++|.+. .....+ +...-+ .....+.....++.+.|+||+..
T Consensus 59 k~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~--~~~~~~~~~~~~i~~iDtPGh~~ 136 (447)
T PLN03127 59 KPHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIA--TAHVEYETAKRHYAHVDCPGHAD 136 (447)
T ss_pred CceEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceee--eeEEEEcCCCeEEEEEECCCccc
Confidence 46688999999999999999999622 100000 011111 11222333345689999999987
Q ss_pred ccccccccccCCcEEEEEEeCCChhhHHhhhhhhHHHHHhhhCCCCC-EEEEeeCccccc
Q 044772 83 YNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVP-IVLVGTKLDLRK 141 (159)
Q Consensus 83 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~p-iilv~nK~Dl~~ 141 (159)
|.......+..+|++++|+|..+...-+.. ..+..+.. .++| ++++.||+|+.+
T Consensus 137 f~~~~~~g~~~aD~allVVda~~g~~~qt~---e~l~~~~~--~gip~iIvviNKiDlv~ 191 (447)
T PLN03127 137 YVKNMITGAAQMDGGILVVSAPDGPMPQTK---EHILLARQ--VGVPSLVVFLNKVDVVD 191 (447)
T ss_pred hHHHHHHHHhhCCEEEEEEECCCCCchhHH---HHHHHHHH--cCCCeEEEEEEeeccCC
Confidence 765555556679999999998754322211 22222222 2578 578999999974
No 259
>PRK00049 elongation factor Tu; Reviewed
Probab=99.24 E-value=8.4e-11 Score=92.74 Aligned_cols=117 Identities=21% Similarity=0.177 Sum_probs=74.3
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCCC---CC---cc-----c---ceeeee-EEEEEECCeEEEEEEEeCCCccccc
Q 044772 20 TKFIKCVTVRDGAVGKTCLLISYTGNTFP---TD---YV-----P---TVFDNF-SANVMVDGRTVNLGLWDTAGQEDYN 84 (159)
Q Consensus 20 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~---~~---~~-----~---t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~ 84 (159)
...++|+++|+.++|||||+++|++.... .. +. + ..+.+. .....+.....++.+.|+||+..|.
T Consensus 10 ~~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~f~ 89 (396)
T PRK00049 10 KPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINTAHVEYETEKRHYAHVDCPGHADYV 89 (396)
T ss_pred CCEEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEeeeEEEEcCCCeEEEEEECCCHHHHH
Confidence 46689999999999999999999863110 00 00 0 000000 1122233334568899999998877
Q ss_pred ccccccccCCcEEEEEEeCCChhhHHhhhhhhHHHHHhhhCCCCCEE-EEeeCccccc
Q 044772 85 RLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIV-LVGTKLDLRK 141 (159)
Q Consensus 85 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~pii-lv~nK~Dl~~ 141 (159)
......+..+|++++|+|+.+...-... .++..+.. .++|++ ++.||+|+..
T Consensus 90 ~~~~~~~~~aD~~llVVDa~~g~~~qt~---~~~~~~~~--~g~p~iiVvvNK~D~~~ 142 (396)
T PRK00049 90 KNMITGAAQMDGAILVVSAADGPMPQTR---EHILLARQ--VGVPYIVVFLNKCDMVD 142 (396)
T ss_pred HHHHhhhccCCEEEEEEECCCCCchHHH---HHHHHHHH--cCCCEEEEEEeecCCcc
Confidence 6666677899999999998864322211 33333332 257865 6899999864
No 260
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=99.23 E-value=3.7e-11 Score=99.86 Aligned_cols=118 Identities=18% Similarity=0.076 Sum_probs=71.8
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCCC-CC-----------cccc--eeeee------------------EEEEEECC
Q 044772 20 TKFIKCVTVRDGAVGKTCLLISYTGNTFP-TD-----------YVPT--VFDNF------------------SANVMVDG 67 (159)
Q Consensus 20 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~-~~-----------~~~t--~~~~~------------------~~~~~~~~ 67 (159)
...++|+++|++++|||||+++|+...-. .. ...+ ....+ .....+..
T Consensus 22 ~~~~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~~~~ 101 (632)
T PRK05506 22 KSLLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRYFAT 101 (632)
T ss_pred CCeeEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeEEcc
Confidence 45578999999999999999999854311 10 0001 00000 00111222
Q ss_pred eEEEEEEEeCCCcccccccccccccCCcEEEEEEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCccccc
Q 044772 68 RTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRK 141 (159)
Q Consensus 68 ~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~ 141 (159)
...++.++|+||++.|.......+..+|++++|+|+.....-+.. ..+..+.. ....+++|+.||+|+.+
T Consensus 102 ~~~~~~liDtPG~~~f~~~~~~~~~~aD~~llVvda~~g~~~~t~---e~~~~~~~-~~~~~iivvvNK~D~~~ 171 (632)
T PRK05506 102 PKRKFIVADTPGHEQYTRNMVTGASTADLAIILVDARKGVLTQTR---RHSFIASL-LGIRHVVLAVNKMDLVD 171 (632)
T ss_pred CCceEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCccccCH---HHHHHHHH-hCCCeEEEEEEeccccc
Confidence 234578999999988765545567899999999998754322111 11111211 12357899999999864
No 261
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=99.22 E-value=3.5e-11 Score=102.62 Aligned_cols=117 Identities=15% Similarity=0.104 Sum_probs=78.3
Q ss_pred cceeeEEEEEcCCCCCHHHHHHHHhcCCCC--CCcccc-e-----------eeee---EEEEEE--------------CC
Q 044772 19 ATKFIKCVTVRDGAVGKTCLLISYTGNTFP--TDYVPT-V-----------FDNF---SANVMV--------------DG 67 (159)
Q Consensus 19 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~--~~~~~t-~-----------~~~~---~~~~~~--------------~~ 67 (159)
+.+..+|+|+|+.++|||||+.+|+...-. .....+ . +... ...+.. .+
T Consensus 16 ~~~Irni~iiGhvd~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (843)
T PLN00116 16 KHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDESLKDFKGERDG 95 (843)
T ss_pred ccCccEEEEEcCCCCCHHHHHHHHHHhcCCcccccCCceeeccCcHHHHHhCCceecceeEEEeecccccccccccccCC
Confidence 456789999999999999999999854311 100000 0 0000 011111 12
Q ss_pred eEEEEEEEeCCCcccccccccccccCCcEEEEEEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCcccc
Q 044772 68 RTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLR 140 (159)
Q Consensus 68 ~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~ 140 (159)
..+.++++|+||+..|.......+..+|++|+|+|+...-...... .|-..+. .++|++++.||+|+.
T Consensus 96 ~~~~inliDtPGh~dF~~e~~~al~~~D~ailVvda~~Gv~~~t~~--~~~~~~~---~~~p~i~~iNK~D~~ 163 (843)
T PLN00116 96 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTET--VLRQALG---ERIRPVLTVNKMDRC 163 (843)
T ss_pred CceEEEEECCCCHHHHHHHHHHHHhhcCEEEEEEECCCCCcccHHH--HHHHHHH---CCCCEEEEEECCccc
Confidence 3567899999999999888888889999999999988654333222 3332222 378999999999987
No 262
>PLN00043 elongation factor 1-alpha; Provisional
Probab=99.21 E-value=4.5e-11 Score=95.48 Aligned_cols=116 Identities=13% Similarity=0.052 Sum_probs=74.6
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCC--CC----Cc------------------ccce-ee--ee---EEEEEECCeE
Q 044772 20 TKFIKCVTVRDGAVGKTCLLISYTGNTF--PT----DY------------------VPTV-FD--NF---SANVMVDGRT 69 (159)
Q Consensus 20 ~~~~ki~vvG~~~~GKSsli~~l~~~~~--~~----~~------------------~~t~-~~--~~---~~~~~~~~~~ 69 (159)
...++|+++|+.++|||||+.+|+...- .. .+ .... +. .. .....+....
T Consensus 5 k~~~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~~~~~~~~ 84 (447)
T PLN00043 5 KVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTK 84 (447)
T ss_pred CceEEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEEEEecCCC
Confidence 4568999999999999999998874221 00 00 0000 00 00 0111233345
Q ss_pred EEEEEEeCCCcccccccccccccCCcEEEEEEeCCChhhHH-------hhhhhhHHHHHhhhCCCC-CEEEEeeCcccc
Q 044772 70 VNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISRPSYE-------NISKKKWVPELRHYAPSV-PIVLVGTKLDLR 140 (159)
Q Consensus 70 ~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~-------~~~~~~~~~~i~~~~~~~-piilv~nK~Dl~ 140 (159)
..+.+.|+||+++|.......+..+|++|+|+|+.+ ..|+ ... +.+..+. ..++ +++|+.||+|+.
T Consensus 85 ~~i~liDtPGh~df~~~~~~g~~~aD~aIlVVda~~-G~~e~g~~~~~qT~--eh~~~~~--~~gi~~iIV~vNKmD~~ 158 (447)
T PLN00043 85 YYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTT-GGFEAGISKDGQTR--EHALLAF--TLGVKQMICCCNKMDAT 158 (447)
T ss_pred EEEEEEECCCHHHHHHHHHhhhhhccEEEEEEEccc-CceecccCCCchHH--HHHHHHH--HcCCCcEEEEEEcccCC
Confidence 678999999999999888888999999999999986 3332 111 1111111 1256 478899999986
No 263
>PRK12740 elongation factor G; Reviewed
Probab=99.21 E-value=2.9e-11 Score=101.12 Aligned_cols=110 Identities=19% Similarity=0.169 Sum_probs=71.9
Q ss_pred EcCCCCCHHHHHHHHhcCCCC--C--Cccc--ce----------eeee-EEEEEECCeEEEEEEEeCCCccccccccccc
Q 044772 28 VRDGAVGKTCLLISYTGNTFP--T--DYVP--TV----------FDNF-SANVMVDGRTVNLGLWDTAGQEDYNRLRPLS 90 (159)
Q Consensus 28 vG~~~~GKSsli~~l~~~~~~--~--~~~~--t~----------~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~ 90 (159)
+|+.++|||||+++|+...-. . .... +. +.+. .....+....+.+++||+||+..|...+..+
T Consensus 1 ig~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~i~liDtPG~~~~~~~~~~~ 80 (668)
T PRK12740 1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISITSAATTCEWKGHKINLIDTPGHVDFTGEVERA 80 (668)
T ss_pred CCCCCCcHHHHHHHHHHhcCCCccCccccCCcccCCCChHHHhcCCCeeeceEEEEECCEEEEEEECCCcHHHHHHHHHH
Confidence 699999999999999643211 0 0000 00 0000 1111222234679999999998887777788
Q ss_pred ccCCcEEEEEEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCcccccC
Q 044772 91 YRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKD 142 (159)
Q Consensus 91 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~ 142 (159)
+..+|++++|+|.+......... .| ..+.. .++|+++|+||+|+...
T Consensus 81 l~~aD~vllvvd~~~~~~~~~~~--~~-~~~~~--~~~p~iiv~NK~D~~~~ 127 (668)
T PRK12740 81 LRVLDGAVVVVCAVGGVEPQTET--VW-RQAEK--YGVPRIIFVNKMDRAGA 127 (668)
T ss_pred HHHhCeEEEEEeCCCCcCHHHHH--HH-HHHHH--cCCCEEEEEECCCCCCC
Confidence 99999999999998765554432 23 22322 36899999999998753
No 264
>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=99.21 E-value=1.3e-10 Score=87.28 Aligned_cols=114 Identities=18% Similarity=0.228 Sum_probs=76.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCC-CCCcccceeeeeEEEEEECCeEEEEEEEeCCCccc----cccc---ccccccCCc
Q 044772 24 KCVTVRDGAVGKTCLLISYTGNTF-PTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQED----YNRL---RPLSYRGAD 95 (159)
Q Consensus 24 ki~vvG~~~~GKSsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~----~~~~---~~~~~~~~~ 95 (159)
.+=+||-|++|||||++++...+- ...|..|+-.-....+..++ ...+.+-|+||--. -+.+ .-..+++|.
T Consensus 198 dvGLVG~PNAGKSTLL~als~AKpkVa~YaFTTL~P~iG~v~ydd-f~q~tVADiPGiI~GAh~nkGlG~~FLrHiER~~ 276 (366)
T KOG1489|consen 198 DVGLVGFPNAGKSTLLNALSRAKPKVAHYAFTTLRPHIGTVNYDD-FSQITVADIPGIIEGAHMNKGLGYKFLRHIERCK 276 (366)
T ss_pred ccceecCCCCcHHHHHHHhhccCCcccccceeeeccccceeeccc-cceeEeccCccccccccccCcccHHHHHHHHhhc
Confidence 466899999999999999987663 23444443221111223332 23489999998422 1222 122357899
Q ss_pred EEEEEEeCCCh---hhHHhhhhhhHHHHHhhhC---CCCCEEEEeeCcccc
Q 044772 96 VFILAFSLISR---PSYENISKKKWVPELRHYA---PSVPIVLVGTKLDLR 140 (159)
Q Consensus 96 ~~i~v~d~~~~---~s~~~~~~~~~~~~i~~~~---~~~piilv~nK~Dl~ 140 (159)
.++||+|++.. +-++.++ .+..++..+. .+.|.+||+||+|++
T Consensus 277 ~l~fVvD~s~~~~~~p~~~~~--lL~~ELe~yek~L~~rp~liVaNKiD~~ 325 (366)
T KOG1489|consen 277 GLLFVVDLSGKQLRNPWQQLQ--LLIEELELYEKGLADRPALIVANKIDLP 325 (366)
T ss_pred eEEEEEECCCcccCCHHHHHH--HHHHHHHHHhhhhccCceEEEEeccCch
Confidence 99999999987 6666666 5566666554 378999999999995
No 265
>PTZ00416 elongation factor 2; Provisional
Probab=99.20 E-value=5.7e-11 Score=101.26 Aligned_cols=117 Identities=13% Similarity=0.122 Sum_probs=77.0
Q ss_pred cceeeEEEEEcCCCCCHHHHHHHHhcCCC--CCCcccce------ee----ee-----EEEEEEC--------CeEEEEE
Q 044772 19 ATKFIKCVTVRDGAVGKTCLLISYTGNTF--PTDYVPTV------FD----NF-----SANVMVD--------GRTVNLG 73 (159)
Q Consensus 19 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~--~~~~~~t~------~~----~~-----~~~~~~~--------~~~~~~~ 73 (159)
..+..+|+++|+.++|||||+.+|+...- ......+. .. .. ...+..+ +....+.
T Consensus 16 ~~~irni~iiGh~d~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~i~ 95 (836)
T PTZ00416 16 PDQIRNMSVIAHVDHGKSTLTDSLVCKAGIISSKNAGDARFTDTRADEQERGITIKSTGISLYYEHDLEDGDDKQPFLIN 95 (836)
T ss_pred ccCcCEEEEECCCCCCHHHHHHHHHHhcCCcccccCCceeecccchhhHhhcceeeccceEEEeecccccccCCCceEEE
Confidence 34567999999999999999999985321 11000000 00 00 0011111 2256789
Q ss_pred EEeCCCcccccccccccccCCcEEEEEEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCcccc
Q 044772 74 LWDTAGQEDYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLR 140 (159)
Q Consensus 74 i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~ 140 (159)
+.||||+..|.......+..+|++|+|+|+.+.-..... ..+..+.. .++|++++.||+|+.
T Consensus 96 liDtPG~~~f~~~~~~al~~~D~ailVvda~~g~~~~t~---~~~~~~~~--~~~p~iv~iNK~D~~ 157 (836)
T PTZ00416 96 LIDSPGHVDFSSEVTAALRVTDGALVVVDCVEGVCVQTE---TVLRQALQ--ERIRPVLFINKVDRA 157 (836)
T ss_pred EEcCCCHHhHHHHHHHHHhcCCeEEEEEECCCCcCccHH---HHHHHHHH--cCCCEEEEEEChhhh
Confidence 999999998887778888999999999998864333322 22233322 358999999999986
No 266
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=99.19 E-value=1e-10 Score=84.86 Aligned_cols=117 Identities=22% Similarity=0.175 Sum_probs=63.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCc-c--cceeeeeEEEEEECCeEEEEEEEeCCCccccc-------ccc----c
Q 044772 23 IKCVTVRDGAVGKTCLLISYTGNTFPTDY-V--PTVFDNFSANVMVDGRTVNLGLWDTAGQEDYN-------RLR----P 88 (159)
Q Consensus 23 ~ki~vvG~~~~GKSsli~~l~~~~~~~~~-~--~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~-------~~~----~ 88 (159)
++|+|+|.+|+||||++|.+++....... . +............++.. +.++||||-.... ..+ .
T Consensus 1 l~IlllG~tGsGKSs~~N~ilg~~~f~~~~~~~~~t~~~~~~~~~~~g~~--v~VIDTPGl~d~~~~~~~~~~~i~~~l~ 78 (212)
T PF04548_consen 1 LRILLLGKTGSGKSSLGNSILGKEVFKSGSSAKSVTQECQKYSGEVDGRQ--VTVIDTPGLFDSDGSDEEIIREIKRCLS 78 (212)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSS-SS--TTTSS--SS-EEEEEEETTEE--EEEEE--SSEETTEEHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcccceeeccccCCcccccceeeeeecceE--EEEEeCCCCCCCcccHHHHHHHHHHHHH
Confidence 58999999999999999999987753221 1 11111112233556654 7899999942211 111 1
Q ss_pred ccccCCcEEEEEEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCcccccC
Q 044772 89 LSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKD 142 (159)
Q Consensus 89 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~ 142 (159)
...+..+++++|+... +-+-.+.....++..+....--.-++||.|..|....
T Consensus 79 ~~~~g~ha~llVi~~~-r~t~~~~~~l~~l~~~FG~~~~k~~ivvfT~~d~~~~ 131 (212)
T PF04548_consen 79 LCSPGPHAFLLVIPLG-RFTEEDREVLELLQEIFGEEIWKHTIVVFTHADELED 131 (212)
T ss_dssp HTTT-ESEEEEEEETT-B-SHHHHHHHHHHHHHHCGGGGGGEEEEEEEGGGGTT
T ss_pred hccCCCeEEEEEEecC-cchHHHHHHHHHHHHHccHHHHhHhhHHhhhcccccc
Confidence 2346799999999988 2222222211333333221111347788887775443
No 267
>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]
Probab=99.16 E-value=2.2e-10 Score=90.34 Aligned_cols=121 Identities=24% Similarity=0.218 Sum_probs=78.6
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCCC--CCcccceeeeeEEEEEECCeEEEEEEEeCCCccc-cccc--------cc
Q 044772 20 TKFIKCVTVRDGAVGKTCLLISYTGNTFP--TDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQED-YNRL--------RP 88 (159)
Q Consensus 20 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~-~~~~--------~~ 88 (159)
...++|+++|+||||||||+|.|.+.... +.-..|+.+.....++++| +.+.+.||.|--+ -... -+
T Consensus 266 q~gl~iaIvGrPNvGKSSLlNaL~~~drsIVSpv~GTTRDaiea~v~~~G--~~v~L~DTAGiRe~~~~~iE~~gI~rA~ 343 (531)
T KOG1191|consen 266 QSGLQIAIVGRPNVGKSSLLNALSREDRSIVSPVPGTTRDAIEAQVTVNG--VPVRLSDTAGIREESNDGIEALGIERAR 343 (531)
T ss_pred hcCCeEEEEcCCCCCHHHHHHHHhcCCceEeCCCCCcchhhheeEeecCC--eEEEEEeccccccccCChhHHHhHHHHH
Confidence 45589999999999999999999977643 3334444454444556666 4588999999533 1111 12
Q ss_pred ccccCCcEEEEEEeCCChhhHHhhhhhhHHHHHhhhC-------CCCCEEEEeeCcccccC
Q 044772 89 LSYRGADVFILAFSLISRPSYENISKKKWVPELRHYA-------PSVPIVLVGTKLDLRKD 142 (159)
Q Consensus 89 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~-------~~~piilv~nK~Dl~~~ 142 (159)
..+..+|.+++|+|....+.-.++.-.+.++...... .+.|++++.||+|+...
T Consensus 344 k~~~~advi~~vvda~~~~t~sd~~i~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~ 404 (531)
T KOG1191|consen 344 KRIERADVILLVVDAEESDTESDLKIARILETEGVGLVVIVNKMEKQRIILVANKSDLVSK 404 (531)
T ss_pred HHHhhcCEEEEEecccccccccchHHHHHHHHhccceEEEeccccccceEEEechhhccCc
Confidence 2367899999999994322222222114444333221 35899999999998654
No 268
>KOG3905 consensus Dynein light intermediate chain [Cell motility]
Probab=99.16 E-value=2.2e-10 Score=86.51 Aligned_cols=104 Identities=15% Similarity=0.149 Sum_probs=69.1
Q ss_pred cceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeeeEE-EEEECCeEEEEEEEeCCCcccccccccccccCC---
Q 044772 19 ATKFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSA-NVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGA--- 94 (159)
Q Consensus 19 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~-~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~--- 94 (159)
-+...+|+|+|..++|||||+.+|.+.+. .+.....+..|-. +....+...++.+|-+.|.-....+....+...
T Consensus 49 lpsgk~VlvlGdn~sGKtsLi~klqg~e~-~KkgsgLeY~yl~V~de~RDd~tr~~VWiLDGd~~h~~LLk~al~ats~a 127 (473)
T KOG3905|consen 49 LPSGKNVLVLGDNGSGKTSLISKLQGSET-VKKGSGLEYLYLHVHDEDRDDLTRCNVWILDGDLYHKGLLKFALPATSLA 127 (473)
T ss_pred CCCCCeEEEEccCCCchhHHHHHhhcccc-cCCCCCcceEEEecccccchhhhhcceEEecCchhhhhHHhhcccccCcc
Confidence 34557899999999999999999998662 2323333443321 222223456788999999877777766666543
Q ss_pred c-EEEEEEeCCChhhHHhhhhhhHHHHHhhh
Q 044772 95 D-VFILAFSLISRPSYENISKKKWVPELRHY 124 (159)
Q Consensus 95 ~-~~i~v~d~~~~~s~~~~~~~~~~~~i~~~ 124 (159)
+ .+|++.|++++|...+... .|..-+.++
T Consensus 128 etlviltasms~Pw~~lesLq-kWa~Vl~eh 157 (473)
T KOG3905|consen 128 ETLVILTASMSNPWTLLESLQ-KWASVLREH 157 (473)
T ss_pred ceEEEEEEecCCcHHHHHHHH-HHHHHHHHH
Confidence 2 5789999999987644333 776554443
No 269
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=99.15 E-value=5.9e-11 Score=87.66 Aligned_cols=124 Identities=15% Similarity=0.216 Sum_probs=74.6
Q ss_pred CCCcceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccce--------eeeeEEEEE---------------E-------
Q 044772 16 TTTATKFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTV--------FDNFSANVM---------------V------- 65 (159)
Q Consensus 16 ~~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~--------~~~~~~~~~---------------~------- 65 (159)
+....++.-|+++|..|+|||||++||...-......|-. ..-|...+. .
T Consensus 13 ~~~~~~p~~ilVvGMAGSGKTTF~QrL~~hl~~~~~ppYviNLDPAv~~vpy~aniDIRDtVkYkEvMkqY~LGPNGgI~ 92 (366)
T KOG1532|consen 13 SGAIQRPVIILVVGMAGSGKTTFMQRLNSHLHAKKTPPYVINLDPAVRNVPYPANIDIRDTVKYKEVMKQYQLGPNGGIV 92 (366)
T ss_pred cccccCCcEEEEEecCCCCchhHHHHHHHHHhhccCCCeEEeCCHHHhcCCCccCCchhhhhhHHHHHHHhCCCCCcchh
Confidence 3345567889999999999999999997543322111100 000000000 0
Q ss_pred -------------------CCeEEEEEEEeCCCc-ccc-----cccccccccCCcEEEEEEeCCChhhHHhhhhhhHHHH
Q 044772 66 -------------------DGRTVNLGLWDTAGQ-EDY-----NRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPE 120 (159)
Q Consensus 66 -------------------~~~~~~~~i~D~~g~-~~~-----~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~ 120 (159)
......+.+.||||| +.| ...+...+....-.|++|-++.+.+-... .|+.+
T Consensus 93 TsLNLF~tk~dqv~~~iek~~~~~~~~liDTPGQIE~FtWSAsGsIIte~lass~ptvv~YvvDt~rs~~p~---tFMSN 169 (366)
T KOG1532|consen 93 TSLNLFATKFDQVIELIEKRAEEFDYVLIDTPGQIEAFTWSASGSIITETLASSFPTVVVYVVDTPRSTSPT---TFMSN 169 (366)
T ss_pred hhHHHHHHHHHHHHHHHHHhhcccCEEEEcCCCceEEEEecCCccchHhhHhhcCCeEEEEEecCCcCCCch---hHHHH
Confidence 012356889999998 333 23444555555556666666555443332 77777
Q ss_pred HhhhC-----CCCCEEEEeeCcccccC
Q 044772 121 LRHYA-----PSVPIVLVGTKLDLRKD 142 (159)
Q Consensus 121 i~~~~-----~~~piilv~nK~Dl~~~ 142 (159)
+...+ -++|+|++.||+|+.+.
T Consensus 170 MlYAcSilyktklp~ivvfNK~Dv~d~ 196 (366)
T KOG1532|consen 170 MLYACSILYKTKLPFIVVFNKTDVSDS 196 (366)
T ss_pred HHHHHHHHHhccCCeEEEEeccccccc
Confidence 66554 38999999999999764
No 270
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=99.14 E-value=1.1e-09 Score=82.64 Aligned_cols=89 Identities=22% Similarity=0.253 Sum_probs=64.7
Q ss_pred CcceeeEEEEEcCCCCCHHHHHHHHhcCCCC-CCcccceeeeeEEEEEECCeEEEEEEEeCCCcc-cc---c---ccccc
Q 044772 18 TATKFIKCVTVRDGAVGKTCLLISYTGNTFP-TDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQE-DY---N---RLRPL 89 (159)
Q Consensus 18 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~-~~---~---~~~~~ 89 (159)
.++...++++||.|+||||||+++|.+.+.. ..|..|+-......+.+++ .++++.|+||-- -. . ...-.
T Consensus 59 ~KsGda~v~lVGfPsvGKStLL~~LTnt~seva~y~FTTl~~VPG~l~Y~g--a~IQild~Pgii~gas~g~grG~~vls 136 (365)
T COG1163 59 KKSGDATVALVGFPSVGKSTLLNKLTNTKSEVADYPFTTLEPVPGMLEYKG--AQIQLLDLPGIIEGASSGRGRGRQVLS 136 (365)
T ss_pred eccCCeEEEEEcCCCccHHHHHHHHhCCCccccccCceecccccceEeecC--ceEEEEcCcccccCcccCCCCcceeee
Confidence 4556678999999999999999999977643 4566665554555566666 458999999731 11 1 23345
Q ss_pred cccCCcEEEEEEeCCChhh
Q 044772 90 SYRGADVFILAFSLISRPS 108 (159)
Q Consensus 90 ~~~~~~~~i~v~d~~~~~s 108 (159)
..++||.+++|.|+.....
T Consensus 137 v~R~ADlIiiVld~~~~~~ 155 (365)
T COG1163 137 VARNADLIIIVLDVFEDPH 155 (365)
T ss_pred eeccCCEEEEEEecCCChh
Confidence 6789999999999985554
No 271
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=99.14 E-value=4e-10 Score=90.10 Aligned_cols=116 Identities=15% Similarity=0.072 Sum_probs=73.0
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCC--CCC------------------------Cccc-ceeeeeE---EEEEECCeE
Q 044772 20 TKFIKCVTVRDGAVGKTCLLISYTGNT--FPT------------------------DYVP-TVFDNFS---ANVMVDGRT 69 (159)
Q Consensus 20 ~~~~ki~vvG~~~~GKSsli~~l~~~~--~~~------------------------~~~~-t~~~~~~---~~~~~~~~~ 69 (159)
...++|+++|+.++|||||+.+|+... ... +..+ ..+...+ ....+....
T Consensus 5 k~~~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~~~~~ 84 (446)
T PTZ00141 5 KTHINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETPK 84 (446)
T ss_pred CceEEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEEccCC
Confidence 456899999999999999999997521 110 0000 0000000 111223344
Q ss_pred EEEEEEeCCCcccccccccccccCCcEEEEEEeCCChhh---H---HhhhhhhHHHHHhhhCCCCC-EEEEeeCccc
Q 044772 70 VNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISRPS---Y---ENISKKKWVPELRHYAPSVP-IVLVGTKLDL 139 (159)
Q Consensus 70 ~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s---~---~~~~~~~~~~~i~~~~~~~p-iilv~nK~Dl 139 (159)
..+.+.|+||+.+|.......+..+|++++|+|+..... | .... +.+..+.. .++| ++++.||+|.
T Consensus 85 ~~i~lIDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~--eh~~~~~~--~gi~~iiv~vNKmD~ 157 (446)
T PTZ00141 85 YYFTIIDAPGHRDFIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTR--EHALLAFT--LGVKQMIVCINKMDD 157 (446)
T ss_pred eEEEEEECCChHHHHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHH--HHHHHHHH--cCCCeEEEEEEcccc
Confidence 679999999999998877777889999999999886421 1 1111 11221211 2555 7899999994
No 272
>PRK07560 elongation factor EF-2; Reviewed
Probab=99.11 E-value=3.7e-10 Score=95.23 Aligned_cols=117 Identities=17% Similarity=0.087 Sum_probs=76.4
Q ss_pred cceeeEEEEEcCCCCCHHHHHHHHhcCCC-CCCc-cc--c----ee------ee---eEEEE--EECCeEEEEEEEeCCC
Q 044772 19 ATKFIKCVTVRDGAVGKTCLLISYTGNTF-PTDY-VP--T----VF------DN---FSANV--MVDGRTVNLGLWDTAG 79 (159)
Q Consensus 19 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~-~~~~-~~--t----~~------~~---~~~~~--~~~~~~~~~~i~D~~g 79 (159)
..+..+|+++|+.++|||||+.+|+...- .... .. + .. .+ ....+ ..++..+.++++||||
T Consensus 17 ~~~iRni~iigh~d~GKTTL~e~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG 96 (731)
T PRK07560 17 PEQIRNIGIIAHIDHGKTTLSDNLLAGAGMISEELAGEQLALDFDEEEQARGITIKAANVSMVHEYEGKEYLINLIDTPG 96 (731)
T ss_pred hhcccEEEEEEeCCCCHHHHHHHHHHHcCCcchhhcCcceecCccHHHHHhhhhhhccceEEEEEecCCcEEEEEEcCCC
Confidence 34667899999999999999999985321 1100 00 0 00 00 00011 1244467799999999
Q ss_pred cccccccccccccCCcEEEEEEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCcccc
Q 044772 80 QEDYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLR 140 (159)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~ 140 (159)
+..|.......+..+|++|+|+|........... .|..... .+.|++++.||+|+.
T Consensus 97 ~~df~~~~~~~l~~~D~avlVvda~~g~~~~t~~--~~~~~~~---~~~~~iv~iNK~D~~ 152 (731)
T PRK07560 97 HVDFGGDVTRAMRAVDGAIVVVDAVEGVMPQTET--VLRQALR---ERVKPVLFINKVDRL 152 (731)
T ss_pred ccChHHHHHHHHHhcCEEEEEEECCCCCCccHHH--HHHHHHH---cCCCeEEEEECchhh
Confidence 9988877788889999999999987643322221 3332222 256889999999975
No 273
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=99.09 E-value=1.3e-09 Score=82.73 Aligned_cols=115 Identities=23% Similarity=0.188 Sum_probs=75.1
Q ss_pred EEEEcCCCCCHHHHHHHHhcCCC-CCCcccceeeeeEEEEEECCeEEEEEEEeCCCccc----cccc---ccccccCCcE
Q 044772 25 CVTVRDGAVGKTCLLISYTGNTF-PTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQED----YNRL---RPLSYRGADV 96 (159)
Q Consensus 25 i~vvG~~~~GKSsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~----~~~~---~~~~~~~~~~ 96 (159)
|=+||-|++|||||++.+...+- ..+|.-|+-.-.-..+.+++ .-.|.+-|+||--. =..+ .-..+.+|..
T Consensus 162 VGLVG~PNaGKSTlls~vS~AkPKIadYpFTTL~PnLGvV~~~~-~~sfv~ADIPGLIEGAs~G~GLG~~FLrHIERt~v 240 (369)
T COG0536 162 VGLVGLPNAGKSTLLSAVSAAKPKIADYPFTTLVPNLGVVRVDG-GESFVVADIPGLIEGASEGVGLGLRFLRHIERTRV 240 (369)
T ss_pred cccccCCCCcHHHHHHHHhhcCCcccCCccccccCcccEEEecC-CCcEEEecCcccccccccCCCccHHHHHHHHhhhe
Confidence 55899999999999999986653 34555554322222333322 12388999998311 1111 1233568999
Q ss_pred EEEEEeCCChhh---HHhhhhhhHHHHHhhhC---CCCCEEEEeeCcccccC
Q 044772 97 FILAFSLISRPS---YENISKKKWVPELRHYA---PSVPIVLVGTKLDLRKD 142 (159)
Q Consensus 97 ~i~v~d~~~~~s---~~~~~~~~~~~~i~~~~---~~~piilv~nK~Dl~~~ 142 (159)
++.|+|++..+. .+... ....++..|. .+.|.+||+||+|+...
T Consensus 241 L~hviD~s~~~~~dp~~~~~--~i~~EL~~Y~~~L~~K~~ivv~NKiD~~~~ 290 (369)
T COG0536 241 LLHVIDLSPIDGRDPIEDYQ--TIRNELEKYSPKLAEKPRIVVLNKIDLPLD 290 (369)
T ss_pred eEEEEecCcccCCCHHHHHH--HHHHHHHHhhHHhccCceEEEEeccCCCcC
Confidence 999999986553 34444 6666777765 37899999999996543
No 274
>KOG0082 consensus G-protein alpha subunit (small G protein superfamily) [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=99.08 E-value=4.6e-10 Score=86.19 Aligned_cols=79 Identities=15% Similarity=0.217 Sum_probs=60.3
Q ss_pred EEEEEEeCCCcccccccccccccCCcEEEEEEeCCChhhHH-------hhhh-hhHHHHHhhhC--CCCCEEEEeeCccc
Q 044772 70 VNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISRPSYE-------NISK-KKWVPELRHYA--PSVPIVLVGTKLDL 139 (159)
Q Consensus 70 ~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~-------~~~~-~~~~~~i~~~~--~~~piilv~nK~Dl 139 (159)
..+.++|.|||-.-+..|.++|.+++++|||.++++-+... .+.+ ..+++.|..+. .+.++||+.||.||
T Consensus 195 ~~f~~~DvGGQRseRrKWihcFe~v~aviF~vslSeYdq~l~ED~~~NRM~eS~~LF~sI~n~~~F~~tsiiLFLNK~DL 274 (354)
T KOG0082|consen 195 LKFRMFDVGGQRSERKKWIHCFEDVTAVIFCVSLSEYDQVLEEDETTNRMHESLKLFESICNNKWFANTSIILFLNKKDL 274 (354)
T ss_pred CceEEEeCCCcHHHhhhHHHhhcCCCEEEEEEehhhhhhhcccccchhHHHHHHHHHHHHhcCcccccCcEEEEeecHHH
Confidence 56889999999888899999999999999999988544321 1111 25566666554 48999999999999
Q ss_pred ccCcccccc
Q 044772 140 RKDRQFHLD 148 (159)
Q Consensus 140 ~~~r~v~~~ 148 (159)
-+.+.....
T Consensus 275 FeEKi~~~~ 283 (354)
T KOG0082|consen 275 FEEKIKKVP 283 (354)
T ss_pred HHHHhccCc
Confidence 877665544
No 275
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=99.08 E-value=2.1e-10 Score=88.96 Aligned_cols=112 Identities=18% Similarity=0.233 Sum_probs=58.2
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCCC-CCcccce--eeee-EEEEEECCeEEEEEEEeCCCccccccc-----cccc
Q 044772 20 TKFIKCVTVRDGAVGKTCLLISYTGNTFP-TDYVPTV--FDNF-SANVMVDGRTVNLGLWDTAGQEDYNRL-----RPLS 90 (159)
Q Consensus 20 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~-~~~~~t~--~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~-----~~~~ 90 (159)
...++|+|+|.+|+|||||||.|.+-... +...++. +.+. ...+.... .-.+.+||+||.....-. ....
T Consensus 33 ~~~l~IaV~G~sGsGKSSfINalrGl~~~d~~aA~tGv~etT~~~~~Y~~p~-~pnv~lWDlPG~gt~~f~~~~Yl~~~~ 111 (376)
T PF05049_consen 33 NAPLNIAVTGESGSGKSSFINALRGLGHEDEGAAPTGVVETTMEPTPYPHPK-FPNVTLWDLPGIGTPNFPPEEYLKEVK 111 (376)
T ss_dssp H--EEEEEEESTTSSHHHHHHHHTT--TTSTTS--SSSHSCCTS-EEEE-SS--TTEEEEEE--GGGSS--HHHHHHHTT
T ss_pred cCceEEEEECCCCCCHHHHHHHHhCCCCCCcCcCCCCCCcCCCCCeeCCCCC-CCCCeEEeCCCCCCCCCCHHHHHHHcc
Confidence 35689999999999999999999753222 1112221 2111 11222221 123889999996432211 1233
Q ss_pred ccCCcEEEEEEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCccc
Q 044772 91 YRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDL 139 (159)
Q Consensus 91 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl 139 (159)
+...|.+|++.+ +.|...+. .+...+.+. +.|+.+|-+|+|.
T Consensus 112 ~~~yD~fiii~s----~rf~~ndv-~La~~i~~~--gK~fyfVRTKvD~ 153 (376)
T PF05049_consen 112 FYRYDFFIIISS----ERFTENDV-QLAKEIQRM--GKKFYFVRTKVDS 153 (376)
T ss_dssp GGG-SEEEEEES----SS--HHHH-HHHHHHHHT--T-EEEEEE--HHH
T ss_pred ccccCEEEEEeC----CCCchhhH-HHHHHHHHc--CCcEEEEEecccc
Confidence 567888887666 45655542 444555543 6889999999996
No 276
>PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins. The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo [].
Probab=99.05 E-value=1.4e-09 Score=86.97 Aligned_cols=88 Identities=15% Similarity=0.209 Sum_probs=61.0
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeeeEE-EEEE--CCeEEEEEEEeCCCcccccccccccccC---
Q 044772 20 TKFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSA-NVMV--DGRTVNLGLWDTAGQEDYNRLRPLSYRG--- 93 (159)
Q Consensus 20 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~-~~~~--~~~~~~~~i~D~~g~~~~~~~~~~~~~~--- 93 (159)
.....|+|+|..++|||||+.+|.+.+ .+.++.+-.|.+ .+.. .+...++.+|.+.|...+..+++..+..
T Consensus 23 ~~~k~vlvlG~~~~GKttli~~L~~~e---~~~~~~aLeYty~~v~d~~~dd~~rl~vw~L~g~~~~~~LLk~~lt~~~l 99 (472)
T PF05783_consen 23 PSEKSVLVLGDKGSGKTTLIARLQGIE---DPKKGLALEYTYLDVKDEDRDDLARLNVWELDGDPSHSDLLKFALTPENL 99 (472)
T ss_pred CCCceEEEEeCCCCchHHHHHHhhccC---CCCCCcccceEEEeeccCcCCcCceeeEEEcCCCcchHhHhcccCCcccc
Confidence 345789999999999999999997644 234444444432 1211 2234679999999877777666555543
Q ss_pred -CcEEEEEEeCCChhhHH
Q 044772 94 -ADVFILAFSLISRPSYE 110 (159)
Q Consensus 94 -~~~~i~v~d~~~~~s~~ 110 (159)
--.+|+|.|++.|+.+-
T Consensus 100 ~~t~vvIvlDlS~PW~~~ 117 (472)
T PF05783_consen 100 PNTLVVIVLDLSKPWNIM 117 (472)
T ss_pred cceEEEEEecCCChHHHH
Confidence 22688999999999864
No 277
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=99.05 E-value=5.7e-09 Score=78.75 Aligned_cols=115 Identities=14% Similarity=0.158 Sum_probs=68.4
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcc----------cceee-eeEEEEEECCeEEEEEEEeCCCcccccc----
Q 044772 21 KFIKCVTVRDGAVGKTCLLISYTGNTFPTDYV----------PTVFD-NFSANVMVDGRTVNLGLWDTAGQEDYNR---- 85 (159)
Q Consensus 21 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~----------~t~~~-~~~~~~~~~~~~~~~~i~D~~g~~~~~~---- 85 (159)
..++|+|+|.+|+|||||++.|++........ .+... .....+.-++..+.+.++||||......
T Consensus 3 ~~fnImVvG~sG~GKTTFIntL~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~l~LtiiDTpGfGd~i~n~~~ 82 (281)
T PF00735_consen 3 FNFNIMVVGESGLGKTTFINTLFNSDIISEDSSIPPPSASISRTLEIEERTVELEENGVKLNLTIIDTPGFGDNIDNSDC 82 (281)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHTSS---------S------SCEEEEEEEEEEEETCEEEEEEEEEEC-CSSSSTHCHH
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhcccccccccccccccccccccceeeEEEEeccCCcceEEEEEeCCCccccccchhh
Confidence 56899999999999999999999876543310 11111 1123444567889999999998332110
Q ss_pred ---------------------cccccc--cCCcEEEEEEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCcccc
Q 044772 86 ---------------------LRPLSY--RGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLR 140 (159)
Q Consensus 86 ---------------------~~~~~~--~~~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~ 140 (159)
..+..+ ...|+++++.+.+.. ....++ ++.+++....+++|-|..|+|.-
T Consensus 83 ~~~I~~yI~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI~pt~~-~L~~~D----i~~mk~Ls~~vNvIPvIaKaD~l 155 (281)
T PF00735_consen 83 WEPIVDYIESQFDSYLEEESKINRPRIEDTRVHACLYFIPPTGH-GLKPLD----IEFMKRLSKRVNVIPVIAKADTL 155 (281)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSSS-TTS----EEEEEEEE-TTSS-SS-HHH----HHHHHHHTTTSEEEEEESTGGGS
T ss_pred hHHHHHHHHHHHHHHHHHhhcccccCcCCCCcceEEEEEcCCCc-cchHHH----HHHHHHhcccccEEeEEeccccc
Confidence 001111 247788888887642 333333 33444445578999999999974
No 278
>COG2262 HflX GTPases [General function prediction only]
Probab=99.04 E-value=2.2e-09 Score=83.27 Aligned_cols=118 Identities=19% Similarity=0.161 Sum_probs=78.3
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCCC--CCcccceeeeeEEEEEECCeEEEEEEEeCCCccc-ccccc-------cc
Q 044772 20 TKFIKCVTVRDGAVGKTCLLISYTGNTFP--TDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQED-YNRLR-------PL 89 (159)
Q Consensus 20 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~-~~~~~-------~~ 89 (159)
.....|.++|-.|+|||||+|.|.+.... .....|...+.+ .+.+.+ ...+.+-||-|.-. ..... -.
T Consensus 190 ~~~p~vaLvGYTNAGKSTL~N~LT~~~~~~~d~LFATLdpttR-~~~l~~-g~~vlLtDTVGFI~~LP~~LV~AFksTLE 267 (411)
T COG2262 190 SGIPLVALVGYTNAGKSTLFNALTGADVYVADQLFATLDPTTR-RIELGD-GRKVLLTDTVGFIRDLPHPLVEAFKSTLE 267 (411)
T ss_pred cCCCeEEEEeeccccHHHHHHHHhccCeeccccccccccCcee-EEEeCC-CceEEEecCccCcccCChHHHHHHHHHHH
Confidence 34568999999999999999999966543 334445554443 334443 23477889888421 11111 11
Q ss_pred cccCCcEEEEEEeCCChhhHHhhhhhhHHHHHhhhC-CCCCEEEEeeCccccc
Q 044772 90 SYRGADVFILAFSLISRPSYENISKKKWVPELRHYA-PSVPIVLVGTKLDLRK 141 (159)
Q Consensus 90 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~ 141 (159)
-...+|.++.|+|++++.....+. .-..-+.+.. ..+|+++|.||+|+..
T Consensus 268 E~~~aDlllhVVDaSdp~~~~~~~--~v~~vL~el~~~~~p~i~v~NKiD~~~ 318 (411)
T COG2262 268 EVKEADLLLHVVDASDPEILEKLE--AVEDVLAEIGADEIPIILVLNKIDLLE 318 (411)
T ss_pred HhhcCCEEEEEeecCChhHHHHHH--HHHHHHHHcCCCCCCEEEEEecccccC
Confidence 235799999999999996666555 4444444442 4699999999999654
No 279
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=99.04 E-value=4.8e-10 Score=85.90 Aligned_cols=80 Identities=25% Similarity=0.260 Sum_probs=53.5
Q ss_pred EEEEcCCCCCHHHHHHHHhcCCCC-CCc-----ccceeeeeEEE----------------EEECC-eEEEEEEEeCCCc-
Q 044772 25 CVTVRDGAVGKTCLLISYTGNTFP-TDY-----VPTVFDNFSAN----------------VMVDG-RTVNLGLWDTAGQ- 80 (159)
Q Consensus 25 i~vvG~~~~GKSsli~~l~~~~~~-~~~-----~~t~~~~~~~~----------------~~~~~-~~~~~~i~D~~g~- 80 (159)
|.++|.++||||||+++|.+.... .+| .|+.+..+... ...++ ..+.+++||++|.
T Consensus 1 i~ivG~pnvGKStLfn~lt~~~~~~~~~pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~l~D~aGlv 80 (318)
T cd01899 1 IGLVGKPNAGKSTFFNAATLADVEIANYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELIDVAGLV 80 (318)
T ss_pred CEEECCCCCCHHHHHHHHhCCCCcccCCCCccccceeEEEEEecCCCchhhhhhhcccccccccCcCcceEEEEECCCCC
Confidence 578999999999999999987753 122 23333222110 00122 4477999999997
Q ss_pred ---ccccccccc---cccCCcEEEEEEeCC
Q 044772 81 ---EDYNRLRPL---SYRGADVFILAFSLI 104 (159)
Q Consensus 81 ---~~~~~~~~~---~~~~~~~~i~v~d~~ 104 (159)
+....+... .++++|++++|+|+.
T Consensus 81 ~ga~~~~glg~~fL~~ir~aD~ii~Vvd~~ 110 (318)
T cd01899 81 PGAHEGKGLGNKFLDDLRDADALIHVVDAS 110 (318)
T ss_pred CCccchhhHHHHHHHHHHHCCEEEEEEeCC
Confidence 334443333 488999999999997
No 280
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=99.03 E-value=1.9e-09 Score=78.95 Aligned_cols=109 Identities=22% Similarity=0.183 Sum_probs=65.9
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEE
Q 044772 20 TKFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL 99 (159)
Q Consensus 20 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~ 99 (159)
.....|+++|.+|+|||+|++.+.............+. + .+ .......+.++|+||.- ..+ ....+.+|.+++
T Consensus 37 ~~~~~i~ivG~~~~GKstl~~~l~~~~~~~~~~~~~g~-i--~i-~~~~~~~i~~vDtPg~~--~~~-l~~ak~aDvVll 109 (225)
T cd01882 37 PPPLVVAVVGPPGVGKTTLIKSLVKNYTKQNISDIKGP-I--TV-VTGKKRRLTFIECPNDI--NAM-IDIAKVADLVLL 109 (225)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhcccCcccccccc-E--EE-EecCCceEEEEeCCchH--HHH-HHHHHhcCEEEE
Confidence 44577999999999999999999864221111111111 1 11 11233458899999853 212 233578999999
Q ss_pred EEeCCChhhHHhhhhhhHHHHHhhhCCCCC-EEEEeeCcccc
Q 044772 100 AFSLISRPSYENISKKKWVPELRHYAPSVP-IVLVGTKLDLR 140 (159)
Q Consensus 100 v~d~~~~~s~~~~~~~~~~~~i~~~~~~~p-iilv~nK~Dl~ 140 (159)
++|.......... .++..+... +.| +++|.||+|+.
T Consensus 110 viDa~~~~~~~~~---~i~~~l~~~--g~p~vi~VvnK~D~~ 146 (225)
T cd01882 110 LIDASFGFEMETF---EFLNILQVH--GFPRVMGVLTHLDLF 146 (225)
T ss_pred EEecCcCCCHHHH---HHHHHHHHc--CCCeEEEEEeccccC
Confidence 9998754332221 334433332 466 45699999985
No 281
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.02 E-value=3.2e-09 Score=84.63 Aligned_cols=117 Identities=19% Similarity=0.163 Sum_probs=83.9
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccee-eeeEEEEEECC-eEEEEEEEeCCCcccccccccccccCCcEEE
Q 044772 21 KFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVF-DNFSANVMVDG-RTVNLGLWDTAGQEDYNRLRPLSYRGADVFI 98 (159)
Q Consensus 21 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~-~~~~~~~~~~~-~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i 98 (159)
+..=|+++|+-.-|||||+..+-+.+........+. .....++..+. ..-.+.|.||||++.|..++..-..-+|++|
T Consensus 4 R~PvVtimGHVDHGKTtLLD~IR~t~Va~~EaGGITQhIGA~~v~~~~~~~~~itFiDTPGHeAFt~mRaRGa~vtDIaI 83 (509)
T COG0532 4 RPPVVTIMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAYQVPLDVIKIPGITFIDTPGHEAFTAMRARGASVTDIAI 83 (509)
T ss_pred CCCEEEEeCcccCCccchhhhHhcCccccccCCceeeEeeeEEEEeccCCCceEEEEcCCcHHHHHHHHhcCCccccEEE
Confidence 445689999999999999999987776544333322 22244555541 2235899999999999999999889999999
Q ss_pred EEEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCcccccC
Q 044772 99 LAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKD 142 (159)
Q Consensus 99 ~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~ 142 (159)
+|++++|--.-+.+..+...+. .++|++++.||+|.++.
T Consensus 84 LVVa~dDGv~pQTiEAI~hak~-----a~vP~iVAiNKiDk~~~ 122 (509)
T COG0532 84 LVVAADDGVMPQTIEAINHAKA-----AGVPIVVAINKIDKPEA 122 (509)
T ss_pred EEEEccCCcchhHHHHHHHHHH-----CCCCEEEEEecccCCCC
Confidence 9999997543333321111221 47999999999999743
No 282
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=99.01 E-value=1.4e-09 Score=75.66 Aligned_cols=62 Identities=19% Similarity=0.124 Sum_probs=41.9
Q ss_pred EEEEeCCCccc----ccccccccccCCcEEEEEEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCc
Q 044772 72 LGLWDTAGQED----YNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKL 137 (159)
Q Consensus 72 ~~i~D~~g~~~----~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~ 137 (159)
+.|+|+||... ....+..+++.+|++|+|.+.++..+-.... .|.+...... ..+++|.||.
T Consensus 103 ~~lvDtPG~~~~~~~~~~~~~~~~~~~d~vi~V~~~~~~~~~~~~~--~l~~~~~~~~--~~~i~V~nk~ 168 (168)
T PF00350_consen 103 LTLVDTPGLNSTNSEHTEITEEYLPKADVVIFVVDANQDLTESDME--FLKQMLDPDK--SRTIFVLNKA 168 (168)
T ss_dssp EEEEEEEEBHSSHTTTSHHHHHHHSTTEEEEEEEETTSTGGGHHHH--HHHHHHTTTC--SSEEEEEE-G
T ss_pred eEEEeCCccccchhhhHHHHHHhhccCCEEEEEeccCcccchHHHH--HHHHHhcCCC--CeEEEEEcCC
Confidence 67899999643 2245677889999999999999755544333 4554444433 3489999984
No 283
>PRK09866 hypothetical protein; Provisional
Probab=98.99 E-value=2.7e-09 Score=87.37 Aligned_cols=69 Identities=17% Similarity=0.221 Sum_probs=47.2
Q ss_pred EEEEEEeCCCcccc-----cccccccccCCcEEEEEEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCccccc
Q 044772 70 VNLGLWDTAGQEDY-----NRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRK 141 (159)
Q Consensus 70 ~~~~i~D~~g~~~~-----~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~ 141 (159)
.++.+.||||-... .......+..+|.++||+|.....+..+. ..++.+.+...+.|+++|.||+|+.+
T Consensus 230 ~QIIFVDTPGIhk~~~~~L~k~M~eqL~eADvVLFVVDat~~~s~~De---eIlk~Lkk~~K~~PVILVVNKIDl~d 303 (741)
T PRK09866 230 GQLTLLDTPGPNEAGQPHLQKMLNQQLARASAVLAVLDYTQLKSISDE---EVREAILAVGQSVPLYVLVNKFDQQD 303 (741)
T ss_pred CCEEEEECCCCCCccchHHHHHHHHHHhhCCEEEEEEeCCCCCChhHH---HHHHHHHhcCCCCCEEEEEEcccCCC
Confidence 34678999996432 11223468899999999999865444432 44555555444469999999999853
No 284
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=98.99 E-value=3.6e-09 Score=86.91 Aligned_cols=118 Identities=15% Similarity=0.138 Sum_probs=70.4
Q ss_pred CcceeeEEEEEcCCCCCHHHHHHHHhcCC-CCCCc--ccceeeeeEEEEEECCeEEEEEEEeCCCcccccc---------
Q 044772 18 TATKFIKCVTVRDGAVGKTCLLISYTGNT-FPTDY--VPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNR--------- 85 (159)
Q Consensus 18 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~-~~~~~--~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~--------- 85 (159)
+-...++|+|+|.+|+||||++|.|++.. +.... ..|... .......++ ..+.++||||-.....
T Consensus 114 ~LdfslrIvLVGKTGVGKSSLINSILGekvf~vss~~~~TTr~-~ei~~~idG--~~L~VIDTPGL~dt~~dq~~neeIL 190 (763)
T TIGR00993 114 PLDFSLNILVLGKSGVGKSATINSIFGEVKFSTDAFGMGTTSV-QEIEGLVQG--VKIRVIDTPGLKSSASDQSKNEKIL 190 (763)
T ss_pred ccCcceEEEEECCCCCCHHHHHHHHhccccccccCCCCCceEE-EEEEEEECC--ceEEEEECCCCCccccchHHHHHHH
Confidence 33466899999999999999999999876 33221 122221 111122344 4589999999653311
Q ss_pred -ccccccc--CCcEEEEEEeCCChhhH-HhhhhhhHHHHHhhhCC---CCCEEEEeeCccccc
Q 044772 86 -LRPLSYR--GADVFILAFSLISRPSY-ENISKKKWVPELRHYAP---SVPIVLVGTKLDLRK 141 (159)
Q Consensus 86 -~~~~~~~--~~~~~i~v~d~~~~~s~-~~~~~~~~~~~i~~~~~---~~piilv~nK~Dl~~ 141 (159)
....++. ..|++++|..++..... .+. .++..+...+. -...|||.|+.|...
T Consensus 191 k~Ik~~Lsk~gpDVVLlV~RLd~~~~D~eD~---~aLr~Iq~lFG~~Iwk~tIVVFThgD~lp 250 (763)
T TIGR00993 191 SSVKKFIKKNPPDIVLYVDRLDMQTRDSNDL---PLLRTITDVLGPSIWFNAIVTLTHAASAP 250 (763)
T ss_pred HHHHHHHhcCCCCEEEEEEeCCCccccHHHH---HHHHHHHHHhCHHhHcCEEEEEeCCccCC
Confidence 1122333 47899999887633222 222 45555554442 235788888888643
No 285
>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=98.98 E-value=4.3e-09 Score=84.22 Aligned_cols=117 Identities=17% Similarity=0.237 Sum_probs=83.3
Q ss_pred CCcceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeee-EEEEEE-CCeEEEEEEEeCCCcccccccccccccCC
Q 044772 17 TTATKFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNF-SANVMV-DGRTVNLGLWDTAGQEDYNRLRPLSYRGA 94 (159)
Q Consensus 17 ~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~-~~~~~~~~i~D~~g~~~~~~~~~~~~~~~ 94 (159)
-..+++.=|.++|.-.=|||||+..|-+..........+.... ...+.. +| -.+.|.||||+..|..|+.+--.-+
T Consensus 148 ~l~~RpPVVTiMGHVDHGKTTLLD~lRks~VAA~E~GGITQhIGAF~V~~p~G--~~iTFLDTPGHaAF~aMRaRGA~vt 225 (683)
T KOG1145|consen 148 LLEPRPPVVTIMGHVDHGKTTLLDALRKSSVAAGEAGGITQHIGAFTVTLPSG--KSITFLDTPGHAAFSAMRARGANVT 225 (683)
T ss_pred hcCCCCCeEEEeecccCChhhHHHHHhhCceehhhcCCccceeceEEEecCCC--CEEEEecCCcHHHHHHHHhccCccc
Confidence 3445667799999999999999999987665433222221111 223333 34 4589999999999999999988999
Q ss_pred cEEEEEEeCCChhhHHhhhhhhHHHHHhhhC-CCCCEEEEeeCccccc
Q 044772 95 DVFILAFSLISRPSYENISKKKWVPELRHYA-PSVPIVLVGTKLDLRK 141 (159)
Q Consensus 95 ~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~ 141 (159)
|++|+|+..+|.-.-+.+. .|.... .++|+++..||+|.++
T Consensus 226 DIvVLVVAadDGVmpQT~E------aIkhAk~A~VpiVvAinKiDkp~ 267 (683)
T KOG1145|consen 226 DIVVLVVAADDGVMPQTLE------AIKHAKSANVPIVVAINKIDKPG 267 (683)
T ss_pred cEEEEEEEccCCccHhHHH------HHHHHHhcCCCEEEEEeccCCCC
Confidence 9999999998754433332 222222 4799999999999874
No 286
>KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis]
Probab=98.96 E-value=6.9e-09 Score=82.98 Aligned_cols=119 Identities=17% Similarity=0.137 Sum_probs=84.7
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCC-CCCccc------------ceeeee-EE---EEEECCeEEEEEEEeCCCccc
Q 044772 20 TKFIKCVTVRDGAVGKTCLLISYTGNTF-PTDYVP------------TVFDNF-SA---NVMVDGRTVNLGLWDTAGQED 82 (159)
Q Consensus 20 ~~~~ki~vvG~~~~GKSsli~~l~~~~~-~~~~~~------------t~~~~~-~~---~~~~~~~~~~~~i~D~~g~~~ 82 (159)
.+..++.||-+-.=|||||..||+...- ..+... .-+-+. .+ ....++..+.+++.||||+.+
T Consensus 58 ~~iRNfsIIAHVDHGKSTLaDrLLe~tg~i~~~~~q~q~LDkl~vERERGITIkaQtasify~~~~~ylLNLIDTPGHvD 137 (650)
T KOG0462|consen 58 ENIRNFSIIAHVDHGKSTLADRLLELTGTIDNNIGQEQVLDKLQVERERGITIKAQTASIFYKDGQSYLLNLIDTPGHVD 137 (650)
T ss_pred hhccceEEEEEecCCcchHHHHHHHHhCCCCCCCchhhhhhhhhhhhhcCcEEEeeeeEEEEEcCCceEEEeecCCCccc
Confidence 5677899999999999999999984332 111000 001111 11 222346778999999999999
Q ss_pred ccccccccccCCcEEEEEEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCcccccCc
Q 044772 83 YNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKDR 143 (159)
Q Consensus 83 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~r 143 (159)
|.....+-+..|+++++++|++..-.-+.+. .+...+. .+..+|.|.||+|++..+
T Consensus 138 Fs~EVsRslaac~G~lLvVDA~qGvqAQT~a--nf~lAfe---~~L~iIpVlNKIDlp~ad 193 (650)
T KOG0462|consen 138 FSGEVSRSLAACDGALLVVDASQGVQAQTVA--NFYLAFE---AGLAIIPVLNKIDLPSAD 193 (650)
T ss_pred ccceehehhhhcCceEEEEEcCcCchHHHHH--HHHHHHH---cCCeEEEeeeccCCCCCC
Confidence 9999999999999999999998655555444 3333333 368899999999998544
No 287
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=98.96 E-value=4.8e-09 Score=81.44 Aligned_cols=130 Identities=14% Similarity=0.079 Sum_probs=81.0
Q ss_pred cceeeEEEEEcCCCCCHHHHHHHHhcCC--CCCC----------------------cccce-----eeee-EEEEEECCe
Q 044772 19 ATKFIKCVTVRDGAVGKTCLLISYTGNT--FPTD----------------------YVPTV-----FDNF-SANVMVDGR 68 (159)
Q Consensus 19 ~~~~~ki~vvG~~~~GKSsli~~l~~~~--~~~~----------------------~~~t~-----~~~~-~~~~~~~~~ 68 (159)
....++++++|+..+|||||+-||+.+. +... ...+. +.+. .....+...
T Consensus 4 ~Kph~nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~~fet~ 83 (428)
T COG5256 4 EKPHLNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAHSKFETD 83 (428)
T ss_pred CCCceEEEEEcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEEEEEEEEeecC
Confidence 3467899999999999999999887443 2110 00000 0111 112223445
Q ss_pred EEEEEEEeCCCcccccccccccccCCcEEEEEEeCCChhhHHhhhh--h-hHHHHHhhhCCCCCEEEEeeCcccccCccc
Q 044772 69 TVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISRPSYENISK--K-KWVPELRHYAPSVPIVLVGTKLDLRKDRQF 145 (159)
Q Consensus 69 ~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~--~-~~~~~i~~~~~~~piilv~nK~Dl~~~r~v 145 (159)
.+.+.|.|+||+-.|-.....-...+|+.|+|+|+.+.+....+.. + +=...+.+...--.+|++.||+|+.+.++-
T Consensus 84 k~~~tIiDaPGHrdFvknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~~La~tlGi~~lIVavNKMD~v~wde~ 163 (428)
T COG5256 84 KYNFTIIDAPGHRDFVKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTREHAFLARTLGIKQLIVAVNKMDLVSWDEE 163 (428)
T ss_pred CceEEEeeCCchHHHHHHhhcchhhccEEEEEEECCCCccccccccCCchhHHHHHHHhcCCceEEEEEEcccccccCHH
Confidence 5679999999998887766677788999999999997753222111 0 111111222223458999999999876654
Q ss_pred ccc
Q 044772 146 HLD 148 (159)
Q Consensus 146 ~~~ 148 (159)
..+
T Consensus 164 rf~ 166 (428)
T COG5256 164 RFE 166 (428)
T ss_pred HHH
Confidence 443
No 288
>KOG0468 consensus U5 snRNP-specific protein [Translation, ribosomal structure and biogenesis]
Probab=98.93 E-value=6.3e-09 Score=84.86 Aligned_cols=117 Identities=20% Similarity=0.222 Sum_probs=84.5
Q ss_pred CcceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccc---------ce----eeeeE-----EEEE---ECCeEEEEEEEe
Q 044772 18 TATKFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVP---------TV----FDNFS-----ANVM---VDGRTVNLGLWD 76 (159)
Q Consensus 18 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~---------t~----~~~~~-----~~~~---~~~~~~~~~i~D 76 (159)
.+....++.++|+-+.|||+|+..|..+..+.-+.. +. +...+ .++- ..+..+-++++|
T Consensus 124 ~p~~irnV~l~GhLhhGKT~l~D~Lv~~tHp~~~~~~e~~lrytD~l~~E~eRg~sIK~~p~Tl~l~D~~~KS~l~nilD 203 (971)
T KOG0468|consen 124 NPERIRNVGLVGHLHHGKTALMDLLVEQTHPDFSKNTEADLRYTDTLFYEQERGCSIKSTPVTLVLSDSKGKSYLMNILD 203 (971)
T ss_pred CcceEEEEEEeeccccChhHHHHhhceeccccccccccccccccccchhhHhcCceEeecceEEEEecCcCceeeeeeec
Confidence 445778999999999999999999987765432111 11 00000 0111 135668899999
Q ss_pred CCCcccccccccccccCCcEEEEEEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCccc
Q 044772 77 TAGQEDYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDL 139 (159)
Q Consensus 77 ~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl 139 (159)
+||+-.|.......++.+|++++++|+...-.++.- +.+....+ .+.|+++|.||.|.
T Consensus 204 TPGHVnF~DE~ta~l~~sDgvVlvvDv~EGVmlntE---r~ikhaiq--~~~~i~vviNKiDR 261 (971)
T KOG0468|consen 204 TPGHVNFSDETTASLRLSDGVVLVVDVAEGVMLNTE---RIIKHAIQ--NRLPIVVVINKVDR 261 (971)
T ss_pred CCCcccchHHHHHHhhhcceEEEEEEcccCceeeHH---HHHHHHHh--ccCcEEEEEehhHH
Confidence 999999999888999999999999999977666544 33332222 47999999999995
No 289
>PRK09602 translation-associated GTPase; Reviewed
Probab=98.91 E-value=9.8e-09 Score=80.92 Aligned_cols=82 Identities=26% Similarity=0.218 Sum_probs=54.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCC-Ccccce-eeeeEE-EE-------------------EEC-CeEEEEEEEeCCC
Q 044772 23 IKCVTVRDGAVGKTCLLISYTGNTFPT-DYVPTV-FDNFSA-NV-------------------MVD-GRTVNLGLWDTAG 79 (159)
Q Consensus 23 ~ki~vvG~~~~GKSsli~~l~~~~~~~-~~~~t~-~~~~~~-~~-------------------~~~-~~~~~~~i~D~~g 79 (159)
++|.+||.|+||||||+++|.+..+.. +|..+. ...... .+ ..+ .....+++||++|
T Consensus 2 ~kigivG~pnvGKSTlfn~Lt~~~~~~~~y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~D~aG 81 (396)
T PRK09602 2 ITIGLVGKPNVGKSTFFNAATLADVEIANYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELIDVAG 81 (396)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCcccccCCCCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEEEcCC
Confidence 589999999999999999999877642 342222 222211 10 011 2346799999999
Q ss_pred c----cccccccccc---ccCCcEEEEEEeCC
Q 044772 80 Q----EDYNRLRPLS---YRGADVFILAFSLI 104 (159)
Q Consensus 80 ~----~~~~~~~~~~---~~~~~~~i~v~d~~ 104 (159)
. .....+-..+ ++++|++++|+|+.
T Consensus 82 l~~ga~~g~glg~~fL~~ir~ad~ll~Vvd~~ 113 (396)
T PRK09602 82 LVPGAHEGRGLGNQFLDDLRQADALIHVVDAS 113 (396)
T ss_pred cCCCccchhhHHHHHHHHHHHCCEEEEEEeCC
Confidence 4 2233333334 78999999999996
No 290
>KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only]
Probab=98.87 E-value=9.8e-10 Score=86.96 Aligned_cols=120 Identities=15% Similarity=0.096 Sum_probs=78.6
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCCC-CCcccceeeeeEEEEEECCeEEEEEEEeCCCcccccc----cccc----cc
Q 044772 21 KFIKCVTVRDGAVGKTCLLISYTGNTFP-TDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNR----LRPL----SY 91 (159)
Q Consensus 21 ~~~ki~vvG~~~~GKSsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~----~~~~----~~ 91 (159)
....++++|-|+||||||++.+...... ..|..|..-.+..++ +.....+++.||||--.... .+.. .+
T Consensus 167 ~trTlllcG~PNVGKSSf~~~vtradvevqpYaFTTksL~vGH~--dykYlrwQViDTPGILD~plEdrN~IEmqsITAL 244 (620)
T KOG1490|consen 167 NTRTLLVCGYPNVGKSSFNNKVTRADDEVQPYAFTTKLLLVGHL--DYKYLRWQVIDTPGILDRPEEDRNIIEMQIITAL 244 (620)
T ss_pred CcCeEEEecCCCCCcHhhcccccccccccCCcccccchhhhhhh--hhheeeeeecCCccccCcchhhhhHHHHHHHHHH
Confidence 4567999999999999999988866643 456555544444332 33445699999999432211 1110 11
Q ss_pred -cCCcEEEEEEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCcccccC
Q 044772 92 -RGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKD 142 (159)
Q Consensus 92 -~~~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~ 142 (159)
.--.+++++.|++..=.+.-..-..++..|+....+.|.|+|.||+|+-.-
T Consensus 245 AHLraaVLYfmDLSe~CGySva~QvkLfhsIKpLFaNK~~IlvlNK~D~m~~ 296 (620)
T KOG1490|consen 245 AHLRSAVLYFMDLSEMCGYSVAAQVKLYHSIKPLFANKVTILVLNKIDAMRP 296 (620)
T ss_pred HHhhhhheeeeechhhhCCCHHHHHHHHHHhHHHhcCCceEEEeecccccCc
Confidence 112368899998854333222212788888888889999999999998543
No 291
>PRK14845 translation initiation factor IF-2; Provisional
Probab=98.84 E-value=1.7e-08 Score=87.23 Aligned_cols=100 Identities=23% Similarity=0.300 Sum_probs=65.6
Q ss_pred CHHHHHHHHhcCCCCCCcccceeeee-EEEEEECC-e----------EE-----EEEEEeCCCcccccccccccccCCcE
Q 044772 34 GKTCLLISYTGNTFPTDYVPTVFDNF-SANVMVDG-R----------TV-----NLGLWDTAGQEDYNRLRPLSYRGADV 96 (159)
Q Consensus 34 GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~-~----------~~-----~~~i~D~~g~~~~~~~~~~~~~~~~~ 96 (159)
+||||+.++.+..........+.... ...+..+. . .. .+.+|||||++.|..+....+..+|+
T Consensus 473 ~KTtLLD~iR~t~v~~~EaGGITQ~IGa~~v~~~~~~~~~~~~~~~~~~~~~~p~i~fiDTPGhe~F~~lr~~g~~~aDi 552 (1049)
T PRK14845 473 HNTTLLDKIRKTRVAKKEAGGITQHIGATEIPIDVIKKICGPLLKLLKAEIKIPGLLFIDTPGHEAFTSLRKRGGSLADL 552 (1049)
T ss_pred ccccHHHHHhCCCcccccCCCceeccceEEEEecccccccccccccccccCCcCcEEEEECCCcHHHHHHHHhhcccCCE
Confidence 39999999987776543222221111 11122211 0 01 27999999999998887778888999
Q ss_pred EEEEEeCCC---hhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCccccc
Q 044772 97 FILAFSLIS---RPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRK 141 (159)
Q Consensus 97 ~i~v~d~~~---~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~ 141 (159)
+++|+|+++ +.++..+. .+.. .++|+++|+||+|+..
T Consensus 553 vlLVVDa~~Gi~~qT~e~I~------~lk~--~~iPiIVViNKiDL~~ 592 (1049)
T PRK14845 553 AVLVVDINEGFKPQTIEAIN------ILRQ--YKTPFVVAANKIDLIP 592 (1049)
T ss_pred EEEEEECcccCCHhHHHHHH------HHHH--cCCCEEEEEECCCCcc
Confidence 999999986 34443332 2222 2689999999999964
No 292
>PRK13768 GTPase; Provisional
Probab=98.83 E-value=3.8e-09 Score=78.66 Aligned_cols=72 Identities=17% Similarity=0.141 Sum_probs=46.5
Q ss_pred EEEEEeCCCccccc---cccccc---ccC--CcEEEEEEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCcccccC
Q 044772 71 NLGLWDTAGQEDYN---RLRPLS---YRG--ADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKD 142 (159)
Q Consensus 71 ~~~i~D~~g~~~~~---~~~~~~---~~~--~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~ 142 (159)
.+.+||+||+.... ..+..+ +.. .+++++++|.....+........|+........+.|+++|+||+|+...
T Consensus 98 ~~~~~d~~g~~~~~~~~~~~~~~~~~l~~~~~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~~~~~~~i~v~nK~D~~~~ 177 (253)
T PRK13768 98 DYVLVDTPGQMELFAFRESGRKLVERLSGSSKSVVVFLIDAVLAKTPSDFVSLLLLALSVQLRLGLPQIPVLNKADLLSE 177 (253)
T ss_pred CEEEEeCCcHHHHHhhhHHHHHHHHHHHhcCCeEEEEEechHHhCCHHHHHHHHHHHHHHHHHcCCCEEEEEEhHhhcCc
Confidence 58899999975532 222222 222 7899999999765544443332444433333347999999999998654
No 293
>PF00503 G-alpha: G-protein alpha subunit; InterPro: IPR001019 Guanine nucleotide binding proteins (G proteins) are membrane-associated, heterotrimeric proteins composed of three subunits: alpha (IPR001019 from INTERPRO), beta (IPR001632 from INTERPRO) and gamma (IPR001770 from INTERPRO) []. G proteins and their receptors (GPCRs) form one of the most prevalent signalling systems in mammalian cells, regulating systems as diverse as sensory perception, cell growth and hormonal regulation []. At the cell surface, the binding of ligands such as hormones and neurotransmitters to a GPCR activates the receptor by causing a conformational change, which in turn activates the bound G protein on the intracellular-side of the membrane. The activated receptor promotes the exchange of bound GDP for GTP on the G protein alpha subunit. GTP binding changes the conformation of switch regions within the alpha subunit, which allows the bound trimeric G protein (inactive) to be released from the receptor, and to dissociate into active alpha subunit (GTP-bound) and beta/gamma dimer. The alpha subunit and the beta/gamma dimer go on to activate distinct downstream effectors, such as adenylyl cyclase, phosphodiesterases, phospholipase C, and ion channels. These effectors in turn regulate the intracellular concentrations of secondary messengers, such as cAMP, diacylglycerol, sodium or calcium cations, which ultimately lead to a physiological response, usually via the downstream regulation of gene transcription. The cycle is completed by the hydrolysis of alpha subunit-bound GTP to GDP, resulting in the re-association of the alpha and beta/gamma subunits and their binding to the receptor, which terminates the signal []. The length of the G protein signal is controlled by the duration of the GTP-bound alpha subunit, which can be regulated by RGS (regulator of G protein signalling) proteins (IPR000342 from INTERPRO) or by covalent modifications []. There are several isoforms of each subunit, many of which have splice variants, which together can make up hundreds of combinations of G proteins. The specific combination of subunits in heterotrimeric G proteins affects not only which receptor it can bind to, but also which downstream target is affected, providing the means to target specific physiological processes in response to specific external stimuli [, ]. G proteins carry lipid modifications on one or more of their subunits to target them to the plasma membrane and to contribute to protein interactions. This family consists of the G protein alpha subunit, which acts as a weak GTPase. G protein classes are defined based on the sequence and function of their alpha subunits, which in mammals fall into four main categories: G(S)alpha, G(Q)alpha, G(I)alpha and G(12)alpha; there are also fungal and plant classes of alpha subunits. The alpha subunit consists of two domains: a GTP-binding domain and a helical insertion domain (IPR011025 from INTERPRO). The GTP-binding domain is homologous to Ras-like small GTPases, and includes switch regions I and II, which change conformation during activation. The switch regions are loops of alpha-helices with conformations sensitive to guanine nucleotides. The helical insertion domain is inserted into the GTP-binding domain before switch region I and is unique to heterotrimeric G proteins. This helical insertion domain functions to sequester the guanine nucleotide at the interface with the GTP-binding domain and must be displaced to enable nucleotide dissociation.; GO: 0004871 signal transducer activity, 0019001 guanyl nucleotide binding, 0007186 G-protein coupled receptor protein signaling pathway; PDB: 3QI2_B 3QE0_A 2IK8_A 2OM2_A 2GTP_B 2XNS_B 3ONW_B 1KJY_A 2EBC_A 1Y3A_B ....
Probab=98.83 E-value=1.7e-08 Score=79.61 Aligned_cols=72 Identities=18% Similarity=0.258 Sum_probs=53.6
Q ss_pred EEEEEEeCCCcccccccccccccCCcEEEEEEeCCChhh----------HHhhhhhhHHHHHhhhC--CCCCEEEEeeCc
Q 044772 70 VNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISRPS----------YENISKKKWVPELRHYA--PSVPIVLVGTKL 137 (159)
Q Consensus 70 ~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s----------~~~~~~~~~~~~i~~~~--~~~piilv~nK~ 137 (159)
..+.++|.+|+...+..|.++|.+.+++|||+++++-+. +.+.. .+++.+.... .+.|++|+.||.
T Consensus 236 ~~~~~~DvGGqr~eRkKW~~~F~~v~~vif~vsls~ydq~~~ed~~~nrl~esl--~lF~~i~~~~~~~~~~iil~lnK~ 313 (389)
T PF00503_consen 236 RKFRLIDVGGQRSERKKWIHCFEDVTAVIFVVSLSEYDQTLYEDPNTNRLHESL--NLFESICNNPWFKNTPIILFLNKI 313 (389)
T ss_dssp EEEEEEEETSSGGGGGGGGGGGTTESEEEEEEEGGGGGSBESSSTTSBHHHHHH--HHHHHHHTSGGGTTSEEEEEEE-H
T ss_pred cccceecCCCCchhhhhHHHHhccccEEEEeecccchhhhhcccchHHHHHHHH--HHHHHHHhCcccccCceEEeeecH
Confidence 458999999998889999999999999999999864322 22222 4555555432 489999999999
Q ss_pred ccccCc
Q 044772 138 DLRKDR 143 (159)
Q Consensus 138 Dl~~~r 143 (159)
|+-.++
T Consensus 314 D~f~~K 319 (389)
T PF00503_consen 314 DLFEEK 319 (389)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 986543
No 294
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=98.82 E-value=1.3e-08 Score=69.23 Aligned_cols=53 Identities=19% Similarity=0.163 Sum_probs=36.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCccccee-eeeEEEEEECCeEEEEEEEeCCCc
Q 044772 24 KCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVF-DNFSANVMVDGRTVNLGLWDTAGQ 80 (159)
Q Consensus 24 ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~i~D~~g~ 80 (159)
+++++|.+|+|||||+|++.+...... ....+ ......+.+++ .+.+|||||-
T Consensus 85 ~~~~~G~~~vGKstlin~l~~~~~~~~-~~~~~~~~~~~~~~~~~---~~~i~DtpG~ 138 (141)
T cd01857 85 TIGLVGYPNVGKSSLINALVGKKKVSV-SATPGKTKHFQTIFLTP---TITLCDCPGL 138 (141)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCceee-CCCCCcccceEEEEeCC---CEEEEECCCc
Confidence 899999999999999999998775421 11111 11233334444 4789999995
No 295
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=98.82 E-value=2.7e-08 Score=83.07 Aligned_cols=118 Identities=20% Similarity=0.107 Sum_probs=82.5
Q ss_pred cceeeEEEEEcCCCCCHHHHHHHHhcCCC-CCCc--cc----c---e------eee-eEEEEEECCe-EEEEEEEeCCCc
Q 044772 19 ATKFIKCVTVRDGAVGKTCLLISYTGNTF-PTDY--VP----T---V------FDN-FSANVMVDGR-TVNLGLWDTAGQ 80 (159)
Q Consensus 19 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~-~~~~--~~----t---~------~~~-~~~~~~~~~~-~~~~~i~D~~g~ 80 (159)
..+..+|-++|+-.+|||||..+++...- .... .. + . +.+ .+.....-.. .+.+++.||||+
T Consensus 7 ~~~~RNigI~aHidaGKTTltE~lL~~tG~i~k~G~v~~g~~~~D~~e~EqeRGITI~saa~s~~~~~~~~iNlIDTPGH 86 (697)
T COG0480 7 LERIRNIGIVAHIDAGKTTLTERILFYTGIISKIGEVHDGAATMDWMEQEQERGITITSAATTLFWKGDYRINLIDTPGH 86 (697)
T ss_pred cccceEEEEEeccCCChHHHHHHHHHHcCCcCCCccccCCCccCCCcHHHHhcCCEEeeeeeEEEEcCceEEEEeCCCCc
Confidence 56778999999999999999999983321 1110 00 0 0 011 1111122223 478999999999
Q ss_pred ccccccccccccCCcEEEEEEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCccccc
Q 044772 81 EDYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRK 141 (159)
Q Consensus 81 ~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~ 141 (159)
-+|.......++-+|++|+|+|+...-..+.-. -|.+.... ++|.+++.||+|...
T Consensus 87 VDFt~EV~rslrvlDgavvVvdaveGV~~QTEt--v~rqa~~~---~vp~i~fiNKmDR~~ 142 (697)
T COG0480 87 VDFTIEVERSLRVLDGAVVVVDAVEGVEPQTET--VWRQADKY---GVPRILFVNKMDRLG 142 (697)
T ss_pred cccHHHHHHHHHhhcceEEEEECCCCeeecHHH--HHHHHhhc---CCCeEEEEECccccc
Confidence 999999999999999999999998654444443 55554433 789999999999753
No 296
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=98.81 E-value=4.6e-08 Score=72.13 Aligned_cols=68 Identities=19% Similarity=0.105 Sum_probs=41.2
Q ss_pred EEEEEEeCCCcccc-------------cccccccccC-CcEEEEEEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEee
Q 044772 70 VNLGLWDTAGQEDY-------------NRLRPLSYRG-ADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGT 135 (159)
Q Consensus 70 ~~~~i~D~~g~~~~-------------~~~~~~~~~~-~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~n 135 (159)
..+.+.|+||-... ..+...|+++ .+++++|.|+...-.-.... .+...+.. ...|+++|.|
T Consensus 125 ~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d~~~~d~l--~ia~~ld~--~~~rti~ViT 200 (240)
T smart00053 125 LNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDLANSDAL--KLAKEVDP--QGERTIGVIT 200 (240)
T ss_pred CceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCCCCchhHH--HHHHHHHH--cCCcEEEEEE
Confidence 45789999996421 1234556774 45888889876432211111 22222222 3689999999
Q ss_pred Cccccc
Q 044772 136 KLDLRK 141 (159)
Q Consensus 136 K~Dl~~ 141 (159)
|+|..+
T Consensus 201 K~D~~~ 206 (240)
T smart00053 201 KLDLMD 206 (240)
T ss_pred CCCCCC
Confidence 999864
No 297
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=98.80 E-value=3e-08 Score=78.19 Aligned_cols=119 Identities=16% Similarity=0.130 Sum_probs=81.7
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCC--CCCCcc-------c-cee-----eeeEEEEEECCeEEEEEEEeCCCcccccc
Q 044772 21 KFIKCVTVRDGAVGKTCLLISYTGNT--FPTDYV-------P-TVF-----DNFSANVMVDGRTVNLGLWDTAGQEDYNR 85 (159)
Q Consensus 21 ~~~ki~vvG~~~~GKSsli~~l~~~~--~~~~~~-------~-t~~-----~~~~~~~~~~~~~~~~~i~D~~g~~~~~~ 85 (159)
...+|++|-+-.=|||||+..|+.+. |..... . ..+ ....+...+....+++++.||||+..|..
T Consensus 4 ~iRNIAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v~ERvMDSnDlEkERGITILaKnTav~~~~~~INIvDTPGHADFGG 83 (603)
T COG1217 4 DIRNIAIIAHVDHGKTTLVDALLKQSGTFREREEVAERVMDSNDLEKERGITILAKNTAVNYNGTRINIVDTPGHADFGG 83 (603)
T ss_pred ccceeEEEEEecCCcchHHHHHHhhccccccccchhhhhcCccchhhhcCcEEEeccceeecCCeEEEEecCCCcCCccc
Confidence 34689999999999999999998665 322100 0 001 11233334455567899999999999999
Q ss_pred cccccccCCcEEEEEEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCcccccCcc
Q 044772 86 LRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKDRQ 144 (159)
Q Consensus 86 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~r~ 144 (159)
.....+.-.|++++++|+.+..--+.-- -+-+.+. .+.+-|+|.||+|.+..|.
T Consensus 84 EVERvl~MVDgvlLlVDA~EGpMPQTrF--VlkKAl~---~gL~PIVVvNKiDrp~Arp 137 (603)
T COG1217 84 EVERVLSMVDGVLLLVDASEGPMPQTRF--VLKKALA---LGLKPIVVINKIDRPDARP 137 (603)
T ss_pred hhhhhhhhcceEEEEEEcccCCCCchhh--hHHHHHH---cCCCcEEEEeCCCCCCCCH
Confidence 9999999999999999988643222111 1111111 3678889999999987664
No 298
>KOG3887 consensus Predicted small GTPase involved in nuclear protein import [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.77 E-value=1.7e-08 Score=73.57 Aligned_cols=115 Identities=16% Similarity=0.247 Sum_probs=74.0
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeeeEEEE---EECCeEEEEEEEeCCCccccccc---ccccccCC
Q 044772 21 KFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANV---MVDGRTVNLGLWDTAGQEDYNRL---RPLSYRGA 94 (159)
Q Consensus 21 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~---~~~~~~~~~~i~D~~g~~~~~~~---~~~~~~~~ 94 (159)
.+.+|+++|...+||||+..-. -.+..++ .|.-.+.+..+ .+.+..+.+++||.|||-.+... ....++.+
T Consensus 26 ~kp~ilLMG~rRsGKsSI~KVV-FhkMsPn--eTlflESTski~~d~is~sfinf~v~dfPGQ~~~Fd~s~D~e~iF~~~ 102 (347)
T KOG3887|consen 26 MKPRILLMGLRRSGKSSIQKVV-FHKMSPN--ETLFLESTSKITRDHISNSFINFQVWDFPGQMDFFDPSFDYEMIFRGV 102 (347)
T ss_pred CCceEEEEeecccCcchhhhee-eeccCCC--ceeEeeccCcccHhhhhhhhcceEEeecCCccccCCCccCHHHHHhcc
Confidence 3456999999999999985433 3333333 12211111111 23446788999999999655432 24458899
Q ss_pred cEEEEEEeCCChhhHHhhhh-hhHHHHHhhhCCCCCEEEEeeCccc
Q 044772 95 DVFILAFSLISRPSYENISK-KKWVPELRHYAPSVPIVLVGTKLDL 139 (159)
Q Consensus 95 ~~~i~v~d~~~~~s~~~~~~-~~~~~~i~~~~~~~piilv~nK~Dl 139 (159)
.++|+|.|..+. -.+.+.. +.......+.++++.+-+..+|.|-
T Consensus 103 gALifvIDaQdd-y~eala~L~~~v~raykvNp~in~EVfiHKvDG 147 (347)
T KOG3887|consen 103 GALIFVIDAQDD-YMEALARLHMTVERAYKVNPNINFEVFIHKVDG 147 (347)
T ss_pred CeEEEEEechHH-HHHHHHHHHHHhhheeecCCCceEEEEEEeccC
Confidence 999999998853 3333331 1334444455689999999999995
No 299
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=98.74 E-value=8.4e-09 Score=67.77 Aligned_cols=104 Identities=26% Similarity=0.221 Sum_probs=66.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccc----ccccccCCcEEE
Q 044772 23 IKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRL----RPLSYRGADVFI 98 (159)
Q Consensus 23 ~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~----~~~~~~~~~~~i 98 (159)
.|+++||..|+|||+|.+.|.+.... |..|...+| ++. -..|+||.---... +.....+++.++
T Consensus 2 Kri~~vG~~gcGKTtL~q~L~G~~~l--ykKTQAve~------~d~----~~IDTPGEy~~~~~~Y~aL~tt~~dadvi~ 69 (148)
T COG4917 2 KRIAFVGQVGCGKTTLFQSLYGNDTL--YKKTQAVEF------NDK----GDIDTPGEYFEHPRWYHALITTLQDADVII 69 (148)
T ss_pred ceeEEecccccCchhHHHHhhcchhh--hcccceeec------cCc----cccCCchhhhhhhHHHHHHHHHhhccceee
Confidence 47999999999999999999876643 223333222 221 14578874221222 233356899999
Q ss_pred EEEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCcccccCcccc
Q 044772 99 LAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKDRQFH 146 (159)
Q Consensus 99 ~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~r~v~ 146 (159)
+|-+++++++.-. ..+.... ..|+|=|.+|.||+++..++
T Consensus 70 ~v~~and~~s~f~-------p~f~~~~-~k~vIgvVTK~DLaed~dI~ 109 (148)
T COG4917 70 YVHAANDPESRFP-------PGFLDIG-VKKVIGVVTKADLAEDADIS 109 (148)
T ss_pred eeecccCccccCC-------ccccccc-ccceEEEEecccccchHhHH
Confidence 9999999876321 1111111 34589999999999665554
No 300
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=98.73 E-value=2.2e-07 Score=71.38 Aligned_cols=117 Identities=18% Similarity=0.216 Sum_probs=74.9
Q ss_pred cceeeEEEEEcCCCCCHHHHHHHHhcCCCCCC----------cccceeeee-EEEEEECCeEEEEEEEeCCCcccccc--
Q 044772 19 ATKFIKCVTVRDGAVGKTCLLISYTGNTFPTD----------YVPTVFDNF-SANVMVDGRTVNLGLWDTAGQEDYNR-- 85 (159)
Q Consensus 19 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~----------~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~-- 85 (159)
....++|+++|++|.|||||+|.|++...... ..++..... ...+.-++..+.+.+.||||...+..
T Consensus 20 ~Gi~f~im~~G~sG~GKttfiNtL~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~~~l~vIDtpGfGD~idNs 99 (373)
T COG5019 20 KGIDFTIMVVGESGLGKTTFINTLFGTSLVDETEIDDIRAEGTSPTLEIKITKAELEEDGFHLNLTVIDTPGFGDFIDNS 99 (373)
T ss_pred cCCceEEEEecCCCCchhHHHHhhhHhhccCCCCccCcccccCCcceEEEeeeeeeecCCeEEEEEEeccCCcccccccc
Confidence 45678999999999999999999998754332 122332222 33444567789999999999433211
Q ss_pred -cc----------------------cc-ccc--CCcEEEEEEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCccc
Q 044772 86 -LR----------------------PL-SYR--GADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDL 139 (159)
Q Consensus 86 -~~----------------------~~-~~~--~~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl 139 (159)
+| +. .+. +.|++++....+. .....++. ..|..+.. .+.+|=|.-|+|.
T Consensus 100 ~~we~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Ptg-h~l~~~DI-e~Mk~ls~---~vNlIPVI~KaD~ 174 (373)
T COG5019 100 KCWEPIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPTG-HGLKPLDI-EAMKRLSK---RVNLIPVIAKADT 174 (373)
T ss_pred ccHHHHHHHHHHHHHHHHHHhhccccccccccCceEEEEEEecCCC-CCCCHHHH-HHHHHHhc---ccCeeeeeecccc
Confidence 11 11 122 4677777777653 34555543 55555554 5677778889996
Q ss_pred c
Q 044772 140 R 140 (159)
Q Consensus 140 ~ 140 (159)
-
T Consensus 175 l 175 (373)
T COG5019 175 L 175 (373)
T ss_pred C
Confidence 3
No 301
>PTZ00258 GTP-binding protein; Provisional
Probab=98.73 E-value=2.4e-08 Score=78.32 Aligned_cols=84 Identities=19% Similarity=0.102 Sum_probs=54.5
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCCC-CCcccce-eeeeEEEEEECCe---------------EEEEEEEeCCCccc
Q 044772 20 TKFIKCVTVRDGAVGKTCLLISYTGNTFP-TDYVPTV-FDNFSANVMVDGR---------------TVNLGLWDTAGQED 82 (159)
Q Consensus 20 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~-~~~~~t~-~~~~~~~~~~~~~---------------~~~~~i~D~~g~~~ 82 (159)
....+|.+||.||||||||+|+|.+.... .+|..++ .... ..+.+.+. ..++.+.|+||-..
T Consensus 19 ~~~~kvgIVG~PNvGKSTLfnaLt~~~~~v~n~pftTi~p~~-g~v~~~d~r~~~l~~~~~~~~~~~aqi~lvDtpGLv~ 97 (390)
T PTZ00258 19 GNNLKMGIVGLPNVGKSTTFNALCKQQVPAENFPFCTIDPNT-ARVNVPDERFDWLCKHFKPKSIVPAQLDITDIAGLVK 97 (390)
T ss_pred CCCcEEEEECCCCCChHHHHHHHhcCcccccCCCCCcccceE-EEEecccchhhHHHHHcCCcccCCCCeEEEECCCcCc
Confidence 45679999999999999999999876643 3344333 2222 22222221 23589999999432
Q ss_pred c-------cccccccccCCcEEEEEEeCC
Q 044772 83 Y-------NRLRPLSYRGADVFILAFSLI 104 (159)
Q Consensus 83 ~-------~~~~~~~~~~~~~~i~v~d~~ 104 (159)
- .......++++|++++|+|..
T Consensus 98 ga~~g~gLg~~fL~~Ir~aD~il~VVd~f 126 (390)
T PTZ00258 98 GASEGEGLGNAFLSHIRAVDGIYHVVRAF 126 (390)
T ss_pred CCcchhHHHHHHHHHHHHCCEEEEEEeCC
Confidence 1 111223467899999999973
No 302
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=98.72 E-value=1.4e-07 Score=74.05 Aligned_cols=115 Identities=13% Similarity=0.157 Sum_probs=73.2
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcC----CCC-------------CCcc----cceeeee----EEEEE-ECCeEEEEEE
Q 044772 21 KFIKCVTVRDGAVGKTCLLISYTGN----TFP-------------TDYV----PTVFDNF----SANVM-VDGRTVNLGL 74 (159)
Q Consensus 21 ~~~ki~vvG~~~~GKSsli~~l~~~----~~~-------------~~~~----~t~~~~~----~~~~~-~~~~~~~~~i 74 (159)
..+-|.++|+-++|||||+++|.+. ... ++.. .|.+..+ ..++. .++....+.+
T Consensus 16 G~IyIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~Ra~DELpqs~~GktItTTePkfvP~kAvEI~~~~~~~~~Vrl 95 (492)
T TIGR02836 16 GDIYIGVVGPVRTGKSTFIKKFMELLVLPNISNEYDKERAQDELPQSAAGKTIMTTEPKFVPNEAVEININEGTKFKVRL 95 (492)
T ss_pred CcEEEEEEcCCCCChHHHHHHHHhhhccccccchhHHhHHHhccCcCCCCCCcccCCCccccCcceEEeccCCCcccEEE
Confidence 3467999999999999999999988 322 1111 2334444 11222 2455678999
Q ss_pred EeCCCccccc--------c------cc---------------ccccc-CCcEEEEEE-eCC----ChhhHHhhhhhhHHH
Q 044772 75 WDTAGQEDYN--------R------LR---------------PLSYR-GADVFILAF-SLI----SRPSYENISKKKWVP 119 (159)
Q Consensus 75 ~D~~g~~~~~--------~------~~---------------~~~~~-~~~~~i~v~-d~~----~~~s~~~~~~~~~~~ 119 (159)
.||.|...-. . -| +.-+. .+++.|+|. |.+ .++.+..... +|+.
T Consensus 96 IDcvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~dhstIgivVtTDgsi~dI~Re~y~~aEe-~~i~ 174 (492)
T TIGR02836 96 VDCVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQEHSTIGVVVTTDGTITDIPREDYVEAEE-RVIE 174 (492)
T ss_pred EECCCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHHHHhcCcEEEEEEcCCCccccccccchHHHH-HHHH
Confidence 9999843211 0 01 11123 677778777 653 2234555554 7888
Q ss_pred HHhhhCCCCCEEEEeeCcc
Q 044772 120 ELRHYAPSVPIVLVGTKLD 138 (159)
Q Consensus 120 ~i~~~~~~~piilv~nK~D 138 (159)
+++.. ++|+++|.||+|
T Consensus 175 eLk~~--~kPfiivlN~~d 191 (492)
T TIGR02836 175 ELKEL--NKPFIILLNSTH 191 (492)
T ss_pred HHHhc--CCCEEEEEECcC
Confidence 87763 599999999999
No 303
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=98.71 E-value=4.6e-08 Score=78.43 Aligned_cols=120 Identities=14% Similarity=0.102 Sum_probs=73.6
Q ss_pred CcceeeEEEEEcCCCCCHHHHHHHHhcCCC---CCC--cccceeeeeEEE------------E--EEC------------
Q 044772 18 TATKFIKCVTVRDGAVGKTCLLISYTGNTF---PTD--YVPTVFDNFSAN------------V--MVD------------ 66 (159)
Q Consensus 18 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~---~~~--~~~t~~~~~~~~------------~--~~~------------ 66 (159)
.....++|.++|+-..|||||+..|.+... ... ..-|+.-.|... . ...
T Consensus 30 ~~~~~~~ig~~GHVDhGKTtLv~aLtg~~~~r~~~E~~rGiTi~lGfa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (460)
T PTZ00327 30 SRQATINIGTIGHVAHGKSTVVKALSGVKTVRFKREKVRNITIKLGYANAKIYKCPKCPRPTCYQSYGSSKPDNPPCPGC 109 (460)
T ss_pred cCCCcEEEEEEccCCCCHHHHHHHHhCCCcccchhhHHhCCchhccccccccccCcccCCcccccccCCCcccccccccc
Confidence 446778999999999999999999986432 110 000111111100 0 000
Q ss_pred C----eEEEEEEEeCCCcccccccccccccCCcEEEEEEeCCChh-hHHhhhhhhHHHHHhhhCCCCCEEEEeeCccccc
Q 044772 67 G----RTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISRP-SYENISKKKWVPELRHYAPSVPIVLVGTKLDLRK 141 (159)
Q Consensus 67 ~----~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~-s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~ 141 (159)
. ....+.+.|+||++.|.......+..+|++++|+|+.+.. ..+.. ..+.. .....-.+++++.||+|+.+
T Consensus 110 ~~~~~~~~~i~~IDtPGH~~fi~~m~~g~~~~D~alLVVda~~g~~~~qT~---ehl~i-~~~lgi~~iIVvlNKiDlv~ 185 (460)
T PTZ00327 110 GHKMTLKRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAANESCPQPQTS---EHLAA-VEIMKLKHIIILQNKIDLVK 185 (460)
T ss_pred cccccccceEeeeeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCccchhhH---HHHHH-HHHcCCCcEEEEEecccccC
Confidence 0 0135889999999988776666677899999999998631 22111 11211 11112346899999999874
No 304
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=98.70 E-value=1.4e-07 Score=74.67 Aligned_cols=120 Identities=19% Similarity=0.134 Sum_probs=84.5
Q ss_pred CcceeeEEEEEcCCCCCHHHHHHHHhcCCC--CCC--------------ccc-cee-eeeEEEEE-ECCeEEEEEEEeCC
Q 044772 18 TATKFIKCVTVRDGAVGKTCLLISYTGNTF--PTD--------------YVP-TVF-DNFSANVM-VDGRTVNLGLWDTA 78 (159)
Q Consensus 18 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~--~~~--------------~~~-t~~-~~~~~~~~-~~~~~~~~~i~D~~ 78 (159)
......++.+|-+-.=|||||..||+...- ... .+. |+. ....-... -++..+.+++.|||
T Consensus 5 ~~~~IRNFsIIAHIDHGKSTLaDRlle~t~~~~~Rem~~Q~LDsMdiERERGITIKaq~v~l~Yk~~~g~~Y~lnlIDTP 84 (603)
T COG0481 5 PQKNIRNFSIIAHIDHGKSTLADRLLELTGGLSEREMRAQVLDSMDIERERGITIKAQAVRLNYKAKDGETYVLNLIDTP 84 (603)
T ss_pred chhhccceEEEEEecCCcchHHHHHHHHhcCcChHHHHHHhhhhhhhHhhcCceEEeeEEEEEEEeCCCCEEEEEEcCCC
Confidence 345667899999999999999999974332 110 000 110 00111112 24578999999999
Q ss_pred CcccccccccccccCCcEEEEEEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCcccccC
Q 044772 79 GQEDYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKD 142 (159)
Q Consensus 79 g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~ 142 (159)
|+-.|.....+.+..|.++++++|++..-.-+.+. ..+..+. .+.-++-|.||+||+..
T Consensus 85 GHVDFsYEVSRSLAACEGalLvVDAsQGveAQTlA--N~YlAle---~~LeIiPViNKIDLP~A 143 (603)
T COG0481 85 GHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLA--NVYLALE---NNLEIIPVLNKIDLPAA 143 (603)
T ss_pred CccceEEEehhhHhhCCCcEEEEECccchHHHHHH--HHHHHHH---cCcEEEEeeecccCCCC
Confidence 99999999999999999999999998655555554 4444443 37889999999999853
No 305
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=98.69 E-value=5.7e-08 Score=75.46 Aligned_cols=81 Identities=21% Similarity=0.172 Sum_probs=52.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCC-CCcccce-eeeeEEEEEECCe---------------EEEEEEEeCCCccccc-
Q 044772 23 IKCVTVRDGAVGKTCLLISYTGNTFP-TDYVPTV-FDNFSANVMVDGR---------------TVNLGLWDTAGQEDYN- 84 (159)
Q Consensus 23 ~ki~vvG~~~~GKSsli~~l~~~~~~-~~~~~t~-~~~~~~~~~~~~~---------------~~~~~i~D~~g~~~~~- 84 (159)
++|.+||.|+||||||+++|.+.... .+|..++ .... ..+.+.+. ...+.+.|+||-..-.
T Consensus 3 ~~vgIVG~PNvGKSTLfnaLt~~~~~v~nypftTi~p~~-G~~~v~d~r~~~l~~~~~p~~~~~a~i~lvD~pGL~~~a~ 81 (364)
T PRK09601 3 LKCGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNV-GVVPVPDPRLDKLAEIVKPKKIVPATIEFVDIAGLVKGAS 81 (364)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCeecccccccccceE-EEEEeccccchhhHHhcCCccccCceEEEEECCCCCCCCC
Confidence 68999999999999999999987743 3333333 2222 22222221 1358999999943211
Q ss_pred ------ccccccccCCcEEEEEEeCC
Q 044772 85 ------RLRPLSYRGADVFILAFSLI 104 (159)
Q Consensus 85 ------~~~~~~~~~~~~~i~v~d~~ 104 (159)
......++.+|++++|+|+.
T Consensus 82 ~g~glg~~fL~~i~~aD~li~VVd~f 107 (364)
T PRK09601 82 KGEGLGNQFLANIREVDAIVHVVRCF 107 (364)
T ss_pred hHHHHHHHHHHHHHhCCEEEEEEeCC
Confidence 11223467899999999974
No 306
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=98.69 E-value=1.6e-08 Score=74.97 Aligned_cols=63 Identities=17% Similarity=0.240 Sum_probs=52.6
Q ss_pred ccccccccccccCCcEEEEEEeCCChh-hHHhhhhhhHHHHHhhhCCCCCEEEEeeCcccccCccccc
Q 044772 81 EDYNRLRPLSYRGADVFILAFSLISRP-SYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKDRQFHL 147 (159)
Q Consensus 81 ~~~~~~~~~~~~~~~~~i~v~d~~~~~-s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~r~v~~ 147 (159)
+++..+.+.++.++|.+++|||+.++. +|..+. +|+..+.. .++|++||+||+||.+.+.+..
T Consensus 24 eR~~~L~r~~~~n~D~viiV~d~~~p~~s~~~l~--r~l~~~~~--~~i~~vIV~NK~DL~~~~~~~~ 87 (245)
T TIGR00157 24 ERKNELTRPIVANIDQIVIVSSAVLPELSLNQLD--RFLVVAEA--QNIEPIIVLNKIDLLDDEDMEK 87 (245)
T ss_pred cccceEECcccccCCEEEEEEECCCCCCCHHHHH--HHHHHHHH--CCCCEEEEEECcccCCCHHHHH
Confidence 566777788999999999999999887 888888 89876654 5799999999999977666553
No 307
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]
Probab=98.69 E-value=8.2e-08 Score=75.23 Aligned_cols=119 Identities=18% Similarity=0.156 Sum_probs=81.0
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHh--cCCCCCC---------cccce---------e-eeeEEEEEECCeEEEEEEEeCC
Q 044772 20 TKFIKCVTVRDGAVGKTCLLISYT--GNTFPTD---------YVPTV---------F-DNFSANVMVDGRTVNLGLWDTA 78 (159)
Q Consensus 20 ~~~~ki~vvG~~~~GKSsli~~l~--~~~~~~~---------~~~t~---------~-~~~~~~~~~~~~~~~~~i~D~~ 78 (159)
.+...++||-+|.+|||||-.+|+ ++.+... ...+. + ...+..++++...+.+++.|||
T Consensus 10 ~rRRTFAIISHPDAGKTTlTEkLLlfGgaIq~AG~Vk~rk~~~~a~SDWM~iEkqRGISVtsSVMqF~Y~~~~iNLLDTP 89 (528)
T COG4108 10 ARRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGKHAKSDWMEIEKQRGISVTSSVMQFDYADCLVNLLDTP 89 (528)
T ss_pred hhhcceeEEecCCCCcccHHHHHHHhcchhhhcceeeeccCCcccccHHHHHHHhcCceEEeeEEEeccCCeEEeccCCC
Confidence 455678999999999999998886 3333210 00000 1 1123344566666789999999
Q ss_pred CcccccccccccccCCcEEEEEEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCcccccCc
Q 044772 79 GQEDYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKDR 143 (159)
Q Consensus 79 g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~r 143 (159)
|++.|..-.-.-+..+|.+|+|+|+...-.-+.+ .+++-.+ ..++||+-+.||.|.+...
T Consensus 90 GHeDFSEDTYRtLtAvDsAvMVIDaAKGiE~qT~---KLfeVcr--lR~iPI~TFiNKlDR~~rd 149 (528)
T COG4108 90 GHEDFSEDTYRTLTAVDSAVMVIDAAKGIEPQTL---KLFEVCR--LRDIPIFTFINKLDREGRD 149 (528)
T ss_pred CccccchhHHHHHHhhheeeEEEecccCccHHHH---HHHHHHh--hcCCceEEEeeccccccCC
Confidence 9999988777778899999999998854332322 3333222 1489999999999986433
No 308
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=98.68 E-value=4.1e-09 Score=77.77 Aligned_cols=68 Identities=19% Similarity=0.162 Sum_probs=35.2
Q ss_pred EEEEEeCCCcccccccccc------ccc--CCcEEEEEEeCC---ChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCccc
Q 044772 71 NLGLWDTAGQEDYNRLRPL------SYR--GADVFILAFSLI---SRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDL 139 (159)
Q Consensus 71 ~~~i~D~~g~~~~~~~~~~------~~~--~~~~~i~v~d~~---~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl 139 (159)
.+.++|||||.++...+.. .+. ..-+++++.|.. ++..|-... ++.......-+.|.+.|.||+|+
T Consensus 92 ~y~l~DtPGQiElf~~~~~~~~i~~~L~~~~~~~~v~LvD~~~~~~~~~f~s~~---L~s~s~~~~~~lP~vnvlsK~Dl 168 (238)
T PF03029_consen 92 DYLLFDTPGQIELFTHSDSGRKIVERLQKNGRLVVVFLVDSSFCSDPSKFVSSL---LLSLSIMLRLELPHVNVLSKIDL 168 (238)
T ss_dssp SEEEEE--SSHHHHHHSHHHHHHHHTSSS----EEEEEE-GGG-SSHHHHHHHH---HHHHHHHHHHTSEEEEEE--GGG
T ss_pred cEEEEeCCCCEEEEEechhHHHHHHHHhhhcceEEEEEEecccccChhhHHHHH---HHHHHHHhhCCCCEEEeeeccCc
Confidence 6889999999766544322 222 344677888865 444443332 22211111237999999999999
Q ss_pred cc
Q 044772 140 RK 141 (159)
Q Consensus 140 ~~ 141 (159)
..
T Consensus 169 ~~ 170 (238)
T PF03029_consen 169 LS 170 (238)
T ss_dssp S-
T ss_pred cc
Confidence 76
No 309
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=98.68 E-value=3.1e-08 Score=74.43 Aligned_cols=79 Identities=19% Similarity=0.069 Sum_probs=49.8
Q ss_pred EEEEcCCCCCHHHHHHHHhcCCCC-CCcccce-eeeeEEEEEECCe---------------EEEEEEEeCCCccccc---
Q 044772 25 CVTVRDGAVGKTCLLISYTGNTFP-TDYVPTV-FDNFSANVMVDGR---------------TVNLGLWDTAGQEDYN--- 84 (159)
Q Consensus 25 i~vvG~~~~GKSsli~~l~~~~~~-~~~~~t~-~~~~~~~~~~~~~---------------~~~~~i~D~~g~~~~~--- 84 (159)
|.+||.|+||||||+++|.+.+.. .+|..++ .... ..+.+.+. ...+.++|+||-..-.
T Consensus 1 igivG~PN~GKSTLfn~Lt~~~~~~~n~pftTi~p~~-g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD~pGl~~~a~~~ 79 (274)
T cd01900 1 IGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNV-GIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLVKGASKG 79 (274)
T ss_pred CeEeCCCCCcHHHHHHHHhCCCCccccccccchhcee-eeEEeccchhhhHHHHhCCceeeeeEEEEEECCCcCCCCchh
Confidence 478999999999999999987753 2333333 2222 22223222 2358999999943211
Q ss_pred -c---cccccccCCcEEEEEEeCC
Q 044772 85 -R---LRPLSYRGADVFILAFSLI 104 (159)
Q Consensus 85 -~---~~~~~~~~~~~~i~v~d~~ 104 (159)
. ..-..++++|+++.|+|+.
T Consensus 80 ~glg~~fL~~i~~~D~li~VV~~f 103 (274)
T cd01900 80 EGLGNKFLSHIREVDAIAHVVRCF 103 (274)
T ss_pred hHHHHHHHHHHHhCCEEEEEEeCc
Confidence 1 1122357899999999863
No 310
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.65 E-value=1.1e-07 Score=65.74 Aligned_cols=55 Identities=16% Similarity=0.115 Sum_probs=34.9
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeee-EEEEEECCeEEEEEEEeCCC
Q 044772 21 KFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNF-SANVMVDGRTVNLGLWDTAG 79 (159)
Q Consensus 21 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g 79 (159)
...+++++|.+|+|||||+|+|.+.+.... .+..+.+. ...+..+. .+.+.|+||
T Consensus 101 ~~~~v~~~G~~nvGKStliN~l~~~~~~~~-~~~~g~T~~~~~~~~~~---~~~liDtPG 156 (157)
T cd01858 101 KQISVGFIGYPNVGKSSIINTLRSKKVCKV-APIPGETKVWQYITLMK---RIYLIDCPG 156 (157)
T ss_pred cceEEEEEeCCCCChHHHHHHHhcCCceee-CCCCCeeEeEEEEEcCC---CEEEEECcC
Confidence 457899999999999999999997664321 11112211 11222222 267999998
No 311
>KOG2655 consensus Septin family protein (P-loop GTPase) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.63 E-value=4.3e-07 Score=70.12 Aligned_cols=118 Identities=17% Similarity=0.161 Sum_probs=73.8
Q ss_pred CcceeeEEEEEcCCCCCHHHHHHHHhcCCCCCC---------cccceeeee-EEEEEECCeEEEEEEEeCCCcccccc--
Q 044772 18 TATKFIKCVTVRDGAVGKTCLLISYTGNTFPTD---------YVPTVFDNF-SANVMVDGRTVNLGLWDTAGQEDYNR-- 85 (159)
Q Consensus 18 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~---------~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~-- 85 (159)
.....+.++++|++|.|||||+|.|+...+..+ ...+..... ...+.-++..+.+.+.||||...+..
T Consensus 17 KkG~~ftlmvvG~sGlGKsTfiNsLf~~~l~~~~~~~~~~~~~~~t~~i~~~~~~iee~g~~l~LtvidtPGfGD~vdns 96 (366)
T KOG2655|consen 17 KKGFDFTLMVVGESGLGKSTFINSLFLTDLSGNREVPGASERIKETVEIESTKVEIEENGVKLNLTVIDTPGFGDAVDNS 96 (366)
T ss_pred hcCCceEEEEecCCCccHHHHHHHHHhhhccCCcccCCcccCccccceeeeeeeeecCCCeEEeeEEeccCCCccccccc
Confidence 445678999999999999999999998765533 111112211 22333456788899999998432211
Q ss_pred -----------------------ccccccc--CCcEEEEEEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCcccc
Q 044772 86 -----------------------LRPLSYR--GADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLR 140 (159)
Q Consensus 86 -----------------------~~~~~~~--~~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~ 140 (159)
..+..+. +.|++++...... ..+..++. ..+..+.. .+.+|-|.-|.|..
T Consensus 97 ~~w~pi~~yi~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~g-hgL~p~Di-~~Mk~l~~---~vNiIPVI~KaD~l 171 (366)
T KOG2655|consen 97 NCWRPIVNYIDSQFDQYLDEESRLNRSKIKDNRVHCCLYFISPTG-HGLKPLDI-EFMKKLSK---KVNLIPVIAKADTL 171 (366)
T ss_pred ccchhhhHHHHHHHHHHHhhhccCCcccccCCceEEEEEEeCCCC-CCCcHhhH-HHHHHHhc---cccccceeeccccC
Confidence 1122233 5677777777553 23444443 55555554 66777777899964
No 312
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=98.62 E-value=1.4e-07 Score=66.29 Aligned_cols=55 Identities=24% Similarity=0.115 Sum_probs=36.2
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeee-EEEEEECCeEEEEEEEeCCC
Q 044772 21 KFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNF-SANVMVDGRTVNLGLWDTAG 79 (159)
Q Consensus 21 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g 79 (159)
..++++++|.+|+|||||+|+|.+...... .+..+.+. ...+..+. .+.++|+||
T Consensus 116 ~~~~~~~vG~pnvGKSslin~l~~~~~~~~-~~~pg~T~~~~~~~~~~---~~~l~DtPG 171 (172)
T cd04178 116 TSITVGVVGFPNVGKSSLINSLKRSRACNV-GATPGVTKSMQEVHLDK---KVKLLDSPG 171 (172)
T ss_pred cCcEEEEEcCCCCCHHHHHHHHhCccccee-cCCCCeEcceEEEEeCC---CEEEEECcC
Confidence 347999999999999999999997664211 11112222 22333332 378999998
No 313
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=98.62 E-value=1.5e-07 Score=64.88 Aligned_cols=55 Identities=24% Similarity=0.204 Sum_probs=38.1
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeeeEEE-EEECCeEEEEEEEeCCC
Q 044772 21 KFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSAN-VMVDGRTVNLGLWDTAG 79 (159)
Q Consensus 21 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~-~~~~~~~~~~~i~D~~g 79 (159)
...+++++|.+++|||||++++.++.. ..+.++.+.+.... ...+. .+.+|||||
T Consensus 100 ~~~~~~~ig~~~~Gkssl~~~l~~~~~-~~~~~~~~~t~~~~~~~~~~---~~~~~DtpG 155 (156)
T cd01859 100 KEGKVGVVGYPNVGKSSIINALKGRHS-ASTSPSPGYTKGEQLVKITS---KIYLLDTPG 155 (156)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCc-cccCCCCCeeeeeEEEEcCC---CEEEEECcC
Confidence 457899999999999999999996553 23344444433322 22222 489999998
No 314
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=98.59 E-value=1.8e-07 Score=65.61 Aligned_cols=57 Identities=19% Similarity=0.130 Sum_probs=38.2
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeee-EEEEEECCeEEEEEEEeCCCc
Q 044772 20 TKFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNF-SANVMVDGRTVNLGLWDTAGQ 80 (159)
Q Consensus 20 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~ 80 (159)
...++++++|.+|+|||||++++.+..+... .+..+.+. ...+.++ ..+.++||||-
T Consensus 113 ~~~~~~~~~G~~~vGKstlin~l~~~~~~~~-~~~~~~T~~~~~~~~~---~~~~~iDtpG~ 170 (171)
T cd01856 113 PRGIRAMVVGIPNVGKSTLINRLRGKKVAKV-GNKPGVTKGIQWIKIS---PGIYLLDTPGI 170 (171)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhCCCceee-cCCCCEEeeeEEEEec---CCEEEEECCCC
Confidence 3457999999999999999999998775321 22222222 2233333 34789999984
No 315
>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]
Probab=98.57 E-value=2e-08 Score=80.39 Aligned_cols=124 Identities=24% Similarity=0.347 Sum_probs=92.8
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEEE
Q 044772 21 KFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADVFILA 100 (159)
Q Consensus 21 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v 100 (159)
..+|+-|||..++|||+|+++++.+.+.+... +.+..|++++..++....+-+.|-+|.. -..|....|++|||
T Consensus 29 pelk~givg~~~sgktalvhr~ltgty~~~e~-~e~~~~kkE~vv~gqs~lLlirdeg~~~-----~aQft~wvdavIfv 102 (749)
T KOG0705|consen 29 PELKLGIVGTSQSGKTALVHRYLTGTYTQDES-PEGGRFKKEVVVDGQSHLLLIRDEGGHP-----DAQFCQWVDAVVFV 102 (749)
T ss_pred chhheeeeecccCCceeeeeeeccceeccccC-CcCccceeeEEeeccceEeeeecccCCc-----hhhhhhhccceEEE
Confidence 46799999999999999999999999876633 4455677777888888888899987732 22455679999999
Q ss_pred EeCCChhhHHhhhhhhHHHHHhhhC--CCCCEEEEeeCcccccCccccccCCCc
Q 044772 101 FSLISRPSYENISKKKWVPELRHYA--PSVPIVLVGTKLDLRKDRQFHLDYPGA 152 (159)
Q Consensus 101 ~d~~~~~s~~~~~~~~~~~~i~~~~--~~~piilv~nK~Dl~~~r~v~~~~~~~ 152 (159)
|.+.+..+|..+. .+...+..+. ..+|+++++++.=....+.-...+++.
T Consensus 103 f~~~d~~s~q~v~--~l~~~l~~~r~r~~i~l~lvgtqd~iS~~~~rv~~da~~ 154 (749)
T KOG0705|consen 103 FSVEDEQSFQAVQ--ALAHEMSSYRNISDLPLILVGTQDHISAKRPRVITDDRA 154 (749)
T ss_pred EEeccccCHHHHH--HHHhhcccccccccchHHhhcCcchhhcccccccchHHH
Confidence 9999999999887 4444444332 478999999887665555444444443
No 316
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=98.56 E-value=2.6e-07 Score=76.52 Aligned_cols=119 Identities=22% Similarity=0.272 Sum_probs=79.9
Q ss_pred CCcceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccc----eeeeeEEEEEE---------CCe-EE---EEEEEeCCC
Q 044772 17 TTATKFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPT----VFDNFSANVMV---------DGR-TV---NLGLWDTAG 79 (159)
Q Consensus 17 ~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t----~~~~~~~~~~~---------~~~-~~---~~~i~D~~g 79 (159)
....+..-|||+|+-..|||-|+..+-+.+........ ++-+|.....+ ++. .+ -+.++||||
T Consensus 470 ~~~lRSPIcCilGHVDTGKTKlld~ir~tNVqegeaggitqqIgAt~fp~~ni~e~tk~~~~~~K~~~kvPg~lvIdtpg 549 (1064)
T KOG1144|consen 470 TENLRSPICCILGHVDTGKTKLLDKIRGTNVQEGEAGGITQQIGATYFPAENIREKTKELKKDAKKRLKVPGLLVIDTPG 549 (1064)
T ss_pred chhcCCceEEEeecccccchHHHHHhhccccccccccceeeeccccccchHHHHHHHHHHHhhhhhhcCCCeeEEecCCC
Confidence 34556667999999999999999999876654332222 12222111100 111 01 167899999
Q ss_pred cccccccccccccCCcEEEEEEeCCCh---hhHHhhhhhhHHHHHhhhCCCCCEEEEeeCcccccCc
Q 044772 80 QEDYNRLRPLSYRGADVFILAFSLISR---PSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKDR 143 (159)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~i~v~d~~~~---~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~r 143 (159)
++.|.+.+...-..|+.+|+|+|+... .+...+ ..++. .+.|+||..||+|....+
T Consensus 550 hEsFtnlRsrgsslC~~aIlvvdImhGlepqtiESi------~lLR~--rktpFivALNKiDRLYgw 608 (1064)
T KOG1144|consen 550 HESFTNLRSRGSSLCDLAILVVDIMHGLEPQTIESI------NLLRM--RKTPFIVALNKIDRLYGW 608 (1064)
T ss_pred chhhhhhhhccccccceEEEEeehhccCCcchhHHH------HHHHh--cCCCeEEeehhhhhhccc
Confidence 999999999999999999999998753 333322 22222 479999999999976433
No 317
>KOG2486 consensus Predicted GTPase [General function prediction only]
Probab=98.53 E-value=1.9e-07 Score=69.43 Aligned_cols=119 Identities=17% Similarity=0.079 Sum_probs=69.8
Q ss_pred CCCCcceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccc-ceeeeeE-EEEEECCeEEEEEEEeCCCc----------cc
Q 044772 15 TTTTATKFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVP-TVFDNFS-ANVMVDGRTVNLGLWDTAGQ----------ED 82 (159)
Q Consensus 15 ~~~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~-t~~~~~~-~~~~~~~~~~~~~i~D~~g~----------~~ 82 (159)
...+..+..+++++|.++||||||++.+...+....... ..+.+-. ....++. .+.+.|.||. +.
T Consensus 129 ~D~Pk~~~pe~~~~g~SNVGKSSLln~~~r~k~~~~t~k~K~g~Tq~in~f~v~~---~~~~vDlPG~~~a~y~~~~~~d 205 (320)
T KOG2486|consen 129 EDCPKDKRPELAFYGRSNVGKSSLLNDLVRVKNIADTSKSKNGKTQAINHFHVGK---SWYEVDLPGYGRAGYGFELPAD 205 (320)
T ss_pred ccCCCCCCceeeeecCCcccHHHHHhhhhhhhhhhhhcCCCCccceeeeeeeccc---eEEEEecCCcccccCCccCcch
Confidence 334567889999999999999999999987665422111 2222111 1222222 3678888882 22
Q ss_pred ccccccccccCCc---EEEEEEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCccccc
Q 044772 83 YNRLRPLSYRGAD---VFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRK 141 (159)
Q Consensus 83 ~~~~~~~~~~~~~---~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~ 141 (159)
+..+...|+.+-+ -+++..|.+. .++..+. ..++.+.+ .++|..+|.||||...
T Consensus 206 ~~~~t~~Y~leR~nLv~~FLLvd~sv--~i~~~D~-~~i~~~ge--~~VP~t~vfTK~DK~k 262 (320)
T KOG2486|consen 206 WDKFTKSYLLERENLVRVFLLVDASV--PIQPTDN-PEIAWLGE--NNVPMTSVFTKCDKQK 262 (320)
T ss_pred HhHhHHHHHHhhhhhheeeeeeeccC--CCCCCCh-HHHHHHhh--cCCCeEEeeehhhhhh
Confidence 3344455554332 3445555553 3444443 22333332 4699999999999753
No 318
>KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms]
Probab=98.52 E-value=2.4e-06 Score=62.96 Aligned_cols=94 Identities=18% Similarity=0.198 Sum_probs=64.6
Q ss_pred CCcceeeEEEEEcCCCCCHHHHHHHHhcCCC-CCCcccceeeeeEEEEEECCeEEEEEEEeCCCcccc----c---cccc
Q 044772 17 TTATKFIKCVTVRDGAVGKTCLLISYTGNTF-PTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDY----N---RLRP 88 (159)
Q Consensus 17 ~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~----~---~~~~ 88 (159)
..++...+++++|-|.||||||+..+..... ...|..|.-......+.+++.. +++.|+||.-.- . +...
T Consensus 57 V~KsGdaRValIGfPSVGKStlLs~iT~T~SeaA~yeFTTLtcIpGvi~y~ga~--IQllDLPGIieGAsqgkGRGRQvi 134 (364)
T KOG1486|consen 57 VLKSGDARVALIGFPSVGKSTLLSKITSTHSEAASYEFTTLTCIPGVIHYNGAN--IQLLDLPGIIEGASQGKGRGRQVI 134 (364)
T ss_pred eeccCCeEEEEecCCCccHHHHHHHhhcchhhhhceeeeEEEeecceEEecCce--EEEecCcccccccccCCCCCceEE
Confidence 3566778999999999999999999885442 2345555544445556667654 899999984211 1 1223
Q ss_pred ccccCCcEEEEEEeCCChhhHHhh
Q 044772 89 LSYRGADVFILAFSLISRPSYENI 112 (159)
Q Consensus 89 ~~~~~~~~~i~v~d~~~~~s~~~~ 112 (159)
..-+.+|.+++|.|.+..+.-..+
T Consensus 135 avArtaDlilMvLDatk~e~qr~~ 158 (364)
T KOG1486|consen 135 AVARTADLILMVLDATKSEDQREI 158 (364)
T ss_pred EEeecccEEEEEecCCcchhHHHH
Confidence 445779999999999876654433
No 319
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=98.52 E-value=4e-07 Score=68.67 Aligned_cols=56 Identities=21% Similarity=0.181 Sum_probs=37.3
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeee-EEEEEECCeEEEEEEEeCCCc
Q 044772 21 KFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNF-SANVMVDGRTVNLGLWDTAGQ 80 (159)
Q Consensus 21 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~ 80 (159)
..++++++|.+|||||||+|+|.+.+.... ....+.+. ...+.++. .+.++||||.
T Consensus 117 ~~~~~~~vG~~nvGKSslin~l~~~~~~~~-~~~~g~T~~~~~~~~~~---~~~l~DtPG~ 173 (276)
T TIGR03596 117 RPIRAMIVGIPNVGKSTLINRLAGKKVAKV-GNRPGVTKGQQWIKLSD---GLELLDTPGI 173 (276)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCcccc-CCCCCeecceEEEEeCC---CEEEEECCCc
Confidence 468999999999999999999997664322 11112111 22333332 3789999996
No 320
>KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton]
Probab=98.50 E-value=7.8e-07 Score=65.03 Aligned_cols=117 Identities=15% Similarity=0.125 Sum_probs=71.1
Q ss_pred CcceeeEEEEEcCCCCCHHHHHHHHhcCCCCCC-ccc--------ceeeee-EEEEEECCeEEEEEEEeCCCcccc---c
Q 044772 18 TATKFIKCVTVRDGAVGKTCLLISYTGNTFPTD-YVP--------TVFDNF-SANVMVDGRTVNLGLWDTAGQEDY---N 84 (159)
Q Consensus 18 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~-~~~--------t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~---~ 84 (159)
.....++|+|||.+|.|||||+|.++......+ ..+ |.+-.. ...+.-++...++.+.||||...+ .
T Consensus 42 k~GF~FNIMVVgqSglgkstlinTlf~s~v~~~s~~~~~~~p~pkT~eik~~thvieE~gVklkltviDTPGfGDqInN~ 121 (336)
T KOG1547|consen 42 KTGFDFNIMVVGQSGLGKSTLINTLFKSHVSDSSSSDNSAEPIPKTTEIKSITHVIEEKGVKLKLTVIDTPGFGDQINND 121 (336)
T ss_pred hccCceEEEEEecCCCCchhhHHHHHHHHHhhccCCCcccCcccceEEEEeeeeeeeecceEEEEEEecCCCcccccCcc
Confidence 344778999999999999999999986655432 111 222211 223334667888999999995432 2
Q ss_pred ccccc-----------------------cccC--CcEEEEEEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCccc
Q 044772 85 RLRPL-----------------------SYRG--ADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDL 139 (159)
Q Consensus 85 ~~~~~-----------------------~~~~--~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl 139 (159)
.+|.. .+.+ .+.+++....+. .++..++. .+++.+.+ -+.++-|.-|.|-
T Consensus 122 ncWePI~kyIneQye~yL~eElni~R~kripDTRVHcclyFi~ptG-hsLrplDi-eflkrLt~---vvNvvPVIakaDt 196 (336)
T KOG1547|consen 122 NCWEPIEKYINEQYEQYLREELNIAREKRIPDTRVHCCLYFIPPTG-HSLRPLDI-EFLKRLTE---VVNVVPVIAKADT 196 (336)
T ss_pred chhHHHHHHHHHHHHHHHHHHHhHHhhhcCCCceEEEEEEEeCCCC-CccCcccH-HHHHHHhh---hheeeeeEeeccc
Confidence 23321 2233 556666666554 34554543 56666554 3456666778884
No 321
>KOG0458 consensus Elongation factor 1 alpha [Translation, ribosomal structure and biogenesis]
Probab=98.49 E-value=2.8e-06 Score=68.72 Aligned_cols=129 Identities=15% Similarity=0.121 Sum_probs=80.8
Q ss_pred CcceeeEEEEEcCCCCCHHHHHHHHhcCC--C------------------CCCcccce---------eeee-EEEEEECC
Q 044772 18 TATKFIKCVTVRDGAVGKTCLLISYTGNT--F------------------PTDYVPTV---------FDNF-SANVMVDG 67 (159)
Q Consensus 18 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~--~------------------~~~~~~t~---------~~~~-~~~~~~~~ 67 (159)
.+...+.++++|.-.+|||||+-+++..- . .-.|.... +... ....+++.
T Consensus 173 ~~k~~l~lvv~GhVdaGKSTLmG~lLydLg~i~~~~m~kl~~es~~~Gk~Sf~yawiLDeT~eERerGvTm~v~~~~fes 252 (603)
T KOG0458|consen 173 DPKDHLNLVVLGHVDAGKSTLMGHLLYDLGEISSRSMHKLERESKNLGKSSFAYAWILDETKEERERGVTMDVKTTWFES 252 (603)
T ss_pred CCccceEEEEEeccccchhhhhhHHHHHhcCccHHHHHHHHHHHHhcCCcceeeeEEeccchhhhhcceeEEeeeEEEec
Confidence 44477899999999999999998776331 1 11111111 1111 22334455
Q ss_pred eEEEEEEEeCCCcccccccccccccCCcEEEEEEeCCChhhHHh-hhh---hhHHHHHhhhCCCCCEEEEeeCcccccCc
Q 044772 68 RTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISRPSYEN-ISK---KKWVPELRHYAPSVPIVLVGTKLDLRKDR 143 (159)
Q Consensus 68 ~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~-~~~---~~~~~~i~~~~~~~piilv~nK~Dl~~~r 143 (159)
....+.+.|.||+-.|-.....-...+|.+|+|+|++-.. |+. ... -+=...+.+...-..++|+.||+|+.++.
T Consensus 253 ~~~~~tliDaPGhkdFi~nmi~g~sqaD~avLvvd~s~~~-FE~gfd~~gQtrEha~llr~Lgi~qlivaiNKmD~V~Ws 331 (603)
T KOG0458|consen 253 KSKIVTLIDAPGHKDFIPNMISGASQADVAVLVVDASTGE-FESGFDPGGQTREHALLLRSLGISQLIVAINKMDLVSWS 331 (603)
T ss_pred CceeEEEecCCCccccchhhhccccccceEEEEEECCcch-hhhccCCCCchHHHHHHHHHcCcceEEEEeecccccCcc
Confidence 5667999999998888776666677899999999998543 321 111 01111222222245689999999998766
Q ss_pred cccc
Q 044772 144 QFHL 147 (159)
Q Consensus 144 ~v~~ 147 (159)
+-..
T Consensus 332 q~RF 335 (603)
T KOG0458|consen 332 QDRF 335 (603)
T ss_pred HHHH
Confidence 5443
No 322
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=98.48 E-value=6.9e-07 Score=67.76 Aligned_cols=56 Identities=20% Similarity=0.201 Sum_probs=37.5
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeee-EEEEEECCeEEEEEEEeCCCc
Q 044772 21 KFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNF-SANVMVDGRTVNLGLWDTAGQ 80 (159)
Q Consensus 21 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~ 80 (159)
..++++++|.+|||||||+|+|.+.+.... .+..+.+. ...+..+. .+.++||||-
T Consensus 120 ~~~~~~~~G~pnvGKSsliN~l~~~~~~~~-~~~~g~T~~~~~~~~~~---~~~l~DtPGi 176 (287)
T PRK09563 120 RAIRAMIIGIPNVGKSTLINRLAGKKIAKT-GNRPGVTKAQQWIKLGK---GLELLDTPGI 176 (287)
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCcccc-CCCCCeEEEEEEEEeCC---cEEEEECCCc
Confidence 468999999999999999999998764321 11222222 12233332 3789999996
No 323
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=98.38 E-value=1.4e-06 Score=60.02 Aligned_cols=55 Identities=24% Similarity=0.231 Sum_probs=35.6
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCCC-CCcc-cceeeeeEEEEEECCeEEEEEEEeCCC
Q 044772 20 TKFIKCVTVRDGAVGKTCLLISYTGNTFP-TDYV-PTVFDNFSANVMVDGRTVNLGLWDTAG 79 (159)
Q Consensus 20 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~-~~~~-~t~~~~~~~~~~~~~~~~~~~i~D~~g 79 (159)
....+++++|.+|+|||||+|.+.+.... .... .+... ......+ ..+.+.||||
T Consensus 98 ~~~~~~~~~G~~~~GKstlin~l~~~~~~~~~~~~~~t~~--~~~~~~~---~~~~liDtPG 154 (155)
T cd01849 98 KKSITVGVIGYPNVGKSSVINALLNKLKLKVGNVPGTTTS--QQEVKLD---NKIKLLDTPG 154 (155)
T ss_pred ccCcEEEEEccCCCCHHHHHHHHHccccccccCCCCcccc--eEEEEec---CCEEEEECCC
Confidence 35678999999999999999999976532 1111 11111 1222222 2378999998
No 324
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=98.37 E-value=4e-07 Score=63.10 Aligned_cols=24 Identities=21% Similarity=0.297 Sum_probs=21.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCC
Q 044772 23 IKCVTVRDGAVGKTCLLISYTGNT 46 (159)
Q Consensus 23 ~ki~vvG~~~~GKSsli~~l~~~~ 46 (159)
..++++|++|||||||+|.|.+..
T Consensus 36 k~~vl~G~SGvGKSSLiN~L~~~~ 59 (161)
T PF03193_consen 36 KTSVLLGQSGVGKSSLINALLPEA 59 (161)
T ss_dssp SEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CEEEEECCCCCCHHHHHHHHHhhc
Confidence 578999999999999999999774
No 325
>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]
Probab=98.37 E-value=4.6e-06 Score=64.09 Aligned_cols=123 Identities=18% Similarity=0.161 Sum_probs=77.2
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCCC--C----------Ccccceeee-------------eEE--EE-----EECC
Q 044772 20 TKFIKCVTVRDGAVGKTCLLISYTGNTFP--T----------DYVPTVFDN-------------FSA--NV-----MVDG 67 (159)
Q Consensus 20 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~--~----------~~~~t~~~~-------------~~~--~~-----~~~~ 67 (159)
...++++.+|.-.-||||||-||+.+.-. + ....+.+.. ..+ ++ .+..
T Consensus 4 k~lLRfiTcGSVDDGKSTLIGRLL~Dtk~i~eDQla~l~~dS~~~~t~g~~~D~ALLvDGL~AEREQGITIDVAYRyFsT 83 (431)
T COG2895 4 KSLLRFITCGSVDDGKSTLIGRLLYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQGITIDVAYRYFST 83 (431)
T ss_pred ccceeEEEeccccCcchhhhhhhhhcchhhhHHHHHHHhcccccccCCCCccchhhhhhhhHHHHhcCceEEEEeeeccc
Confidence 45689999999999999999999866421 0 001111100 000 01 1122
Q ss_pred eEEEEEEEeCCCcccccccccccccCCcEEEEEEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCcccccCcccc
Q 044772 68 RTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKDRQFH 146 (159)
Q Consensus 68 ~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~r~v~ 146 (159)
.+-+|.+-||||+++|....-.--..|+.+|+++|.-.. -......+.++..+.. =..++|..||+||.+..+-.
T Consensus 84 ~KRkFIiADTPGHeQYTRNMaTGASTadlAIlLVDAR~G-vl~QTrRHs~I~sLLG---IrhvvvAVNKmDLvdy~e~~ 158 (431)
T COG2895 84 EKRKFIIADTPGHEQYTRNMATGASTADLAILLVDARKG-VLEQTRRHSFIASLLG---IRHVVVAVNKMDLVDYSEEV 158 (431)
T ss_pred ccceEEEecCCcHHHHhhhhhcccccccEEEEEEecchh-hHHHhHHHHHHHHHhC---CcEEEEEEeeecccccCHHH
Confidence 334588999999999987766667789999999998532 1222222233333332 23589999999998766544
No 326
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=98.37 E-value=6.4e-07 Score=63.74 Aligned_cols=25 Identities=20% Similarity=0.110 Sum_probs=22.3
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCC
Q 044772 22 FIKCVTVRDGAVGKTCLLISYTGNT 46 (159)
Q Consensus 22 ~~ki~vvG~~~~GKSsli~~l~~~~ 46 (159)
..+++++|.+|+|||||+|.|.+..
T Consensus 127 ~~~~~~~G~~nvGKStliN~l~~~~ 151 (190)
T cd01855 127 GGDVYVVGATNVGKSTLINALLKKD 151 (190)
T ss_pred CCcEEEEcCCCCCHHHHHHHHHHhc
Confidence 3589999999999999999999754
No 327
>COG1161 Predicted GTPases [General function prediction only]
Probab=98.33 E-value=1.5e-06 Score=66.98 Aligned_cols=55 Identities=24% Similarity=0.231 Sum_probs=38.0
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCCCC-Ccccceeeee-EEEEEECCeEEEEEEEeCCCc
Q 044772 21 KFIKCVTVRDGAVGKTCLLISYTGNTFPT-DYVPTVFDNF-SANVMVDGRTVNLGLWDTAGQ 80 (159)
Q Consensus 21 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~-~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~ 80 (159)
+..++.+||-|+||||||||+|.+.+... ...| +.+. ...+..+.. +.++||||-
T Consensus 131 ~~~~v~vvG~PNVGKSslIN~L~~k~~~~~s~~P--G~Tk~~q~i~~~~~---i~LlDtPGi 187 (322)
T COG1161 131 RKIRVGVVGYPNVGKSTLINRLLGKKVAKTSNRP--GTTKGIQWIKLDDG---IYLLDTPGI 187 (322)
T ss_pred cceEEEEEcCCCCcHHHHHHHHhcccceeeCCCC--ceecceEEEEcCCC---eEEecCCCc
Confidence 45789999999999999999999877532 2222 3222 223333433 789999994
No 328
>PRK12288 GTPase RsgA; Reviewed
Probab=98.31 E-value=8.5e-07 Score=68.91 Aligned_cols=24 Identities=21% Similarity=0.247 Sum_probs=21.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCC
Q 044772 24 KCVTVRDGAVGKTCLLISYTGNTF 47 (159)
Q Consensus 24 ki~vvG~~~~GKSsli~~l~~~~~ 47 (159)
-++|+|.+|||||||+|+|++...
T Consensus 207 i~~~vG~sgVGKSTLiN~Ll~~~~ 230 (347)
T PRK12288 207 ISIFVGQSGVGKSSLINALLPEAE 230 (347)
T ss_pred CEEEECCCCCCHHHHHHHhccccc
Confidence 378999999999999999997653
No 329
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=98.18 E-value=7e-06 Score=62.67 Aligned_cols=25 Identities=16% Similarity=0.064 Sum_probs=20.9
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhc
Q 044772 20 TKFIKCVTVRDGAVGKTCLLISYTG 44 (159)
Q Consensus 20 ~~~~ki~vvG~~~~GKSsli~~l~~ 44 (159)
.....|.|+|++|+|||||+..+..
T Consensus 32 ~~~~~i~i~G~~G~GKttl~~~l~~ 56 (300)
T TIGR00750 32 GNAHRVGITGTPGAGKSTLLEALGM 56 (300)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHH
Confidence 3456788999999999999998764
No 330
>KOG0099 consensus G protein subunit Galphas, small G protein superfamily [Signal transduction mechanisms]
Probab=98.18 E-value=1.4e-06 Score=64.42 Aligned_cols=74 Identities=18% Similarity=0.245 Sum_probs=50.6
Q ss_pred CeEEEEEEEeCCCcccccccccccccCCcEEEEEEeCCChhh-------HHhhhh-hhHHHHHhhhC--CCCCEEEEeeC
Q 044772 67 GRTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISRPS-------YENISK-KKWVPELRHYA--PSVPIVLVGTK 136 (159)
Q Consensus 67 ~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s-------~~~~~~-~~~~~~i~~~~--~~~piilv~nK 136 (159)
-..++++.+|.+|+-.-+..|..++.+.-++|||..+++-.. -+.+.+ ..+++.+-... ..+.+||..||
T Consensus 199 Vdkv~FhMfDVGGQRDeRrKWIQcFndvtAiifv~acSsyn~vlrED~~qNRL~EaL~LFksiWnNRwL~tisvIlFLNK 278 (379)
T KOG0099|consen 199 VDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVACSSYNMVLREDNQQNRLQEALNLFKSIWNNRWLRTISVILFLNK 278 (379)
T ss_pred ccccceeeeccCCchhhhhhHHHHhcCccEEEEEEeccchhhhhhcCCchhHHHHHHHHHHHHHhhhHHhhhheeEEecH
Confidence 345679999999999999999999999999999988764221 111110 02222221111 25789999999
Q ss_pred cccc
Q 044772 137 LDLR 140 (159)
Q Consensus 137 ~Dl~ 140 (159)
.|+.
T Consensus 279 qDll 282 (379)
T KOG0099|consen 279 QDLL 282 (379)
T ss_pred HHHH
Confidence 9985
No 331
>TIGR00092 GTP-binding protein YchF. This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.
Probab=98.18 E-value=6.6e-06 Score=64.16 Aligned_cols=81 Identities=17% Similarity=0.034 Sum_probs=53.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCC-C-CCcccc-eeeeeEEEEEECCe---------------EEEEEEEeCCCccc--
Q 044772 23 IKCVTVRDGAVGKTCLLISYTGNTF-P-TDYVPT-VFDNFSANVMVDGR---------------TVNLGLWDTAGQED-- 82 (159)
Q Consensus 23 ~ki~vvG~~~~GKSsli~~l~~~~~-~-~~~~~t-~~~~~~~~~~~~~~---------------~~~~~i~D~~g~~~-- 82 (159)
.++-+||.|++|||||++.|.+... . .+|..+ .+... ..+.+.+. ...+.+.|++|--.
T Consensus 3 lk~GivGlPn~GKSTlfnaLT~~~~~~~a~ypftTi~p~~-g~v~v~d~r~d~L~~~~~~~~~~~a~i~~~DiaGlv~gA 81 (368)
T TIGR00092 3 LSGGIVGLPNVGKSTLFAATTNLLGNEAANPPFTTIEPNA-GVVNPSDPRLDLLAIYIKPEKVPPTTTEFVDIAGLVGGA 81 (368)
T ss_pred ceEEEECCCCCChHHHHHHHhCCCccccCCCCCCCCCCce-eEEEechhHHHHHHHHhCCcCcCCceEEEEeccccccch
Confidence 6899999999999999999997765 3 334433 33322 22333321 23578999998432
Q ss_pred -----ccccccccccCCcEEEEEEeCC
Q 044772 83 -----YNRLRPLSYRGADVFILAFSLI 104 (159)
Q Consensus 83 -----~~~~~~~~~~~~~~~i~v~d~~ 104 (159)
.....-..++++|+++.|+++.
T Consensus 82 s~g~Glgn~fL~~ir~~d~l~hVvr~f 108 (368)
T TIGR00092 82 SKGEGLGNQFLANIREVDIIQHVVRCF 108 (368)
T ss_pred hcccCcchHHHHHHHhCCEEEEEEeCC
Confidence 1223334578899999999974
No 332
>KOG4273 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.16 E-value=3.9e-06 Score=61.82 Aligned_cols=124 Identities=15% Similarity=0.269 Sum_probs=73.1
Q ss_pred EEEEEcCCCC--CHHHHHHHHhcCCCCCCcccceeeeeEEEEEECCeEEE--EEEEeCC-CcccccccccccccCCcEEE
Q 044772 24 KCVTVRDGAV--GKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVN--LGLWDTA-GQEDYNRLRPLSYRGADVFI 98 (159)
Q Consensus 24 ki~vvG~~~~--GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~--~~i~D~~-g~~~~~~~~~~~~~~~~~~i 98 (159)
-++|+|-+|| ||.+|+++|....|...........+. .-+++++.|. +++.-.+ ..+.|... ...-.-..++|
T Consensus 6 ~~lv~g~sgvfsg~~~ll~rl~s~dfed~ses~~~te~h-gwtid~kyysadi~lcishicde~~lpn-~~~a~pl~a~v 83 (418)
T KOG4273|consen 6 CALVTGCSGVFSGDQLLLHRLGSEDFEDESESNDATEFH-GWTIDNKYYSADINLCISHICDEKFLPN-AEIAEPLQAFV 83 (418)
T ss_pred eEEEecccccccchHHHHHHhcchhheeeccccCceeee-ceEecceeeecceeEEeecccchhccCC-cccccceeeEE
Confidence 4688999998 999999999988876543333222221 1123333221 1111111 01222221 11122356889
Q ss_pred EEEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCcccccCccccccCCCc
Q 044772 99 LAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKDRQFHLDYPGA 152 (159)
Q Consensus 99 ~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~r~v~~~~~~~ 152 (159)
++||.+....+..++ .|+....-..-++ ++++|||.|...+...+-+..++
T Consensus 84 mvfdlse~s~l~alq--dwl~htdinsfdi-llcignkvdrvphhlahdeyrrr 134 (418)
T KOG4273|consen 84 MVFDLSEKSGLDALQ--DWLPHTDINSFDI-LLCIGNKVDRVPHHLAHDEYRRR 134 (418)
T ss_pred EEEeccchhhhHHHH--hhccccccccchh-heecccccccccchhhhhHHHHH
Confidence 999999999999888 9988543222222 57889999987766655554443
No 333
>TIGR03348 VI_IcmF type VI secretion protein IcmF. Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.
Probab=98.16 E-value=4.3e-06 Score=74.18 Aligned_cols=112 Identities=23% Similarity=0.209 Sum_probs=63.4
Q ss_pred EEEEcCCCCCHHHHHHHHhcCCCCCCc----ccc--eeeeeEEEEEECCeEEEEEEEeCCCcccc--------ccccccc
Q 044772 25 CVTVRDGAVGKTCLLISYTGNTFPTDY----VPT--VFDNFSANVMVDGRTVNLGLWDTAGQEDY--------NRLRPLS 90 (159)
Q Consensus 25 i~vvG~~~~GKSsli~~l~~~~~~~~~----~~t--~~~~~~~~~~~~~~~~~~~i~D~~g~~~~--------~~~~~~~ 90 (159)
.+|||++|+||||++.+- +-.+.-.. ..+ .+.+.....++.+ +..++|++|.... ...|..+
T Consensus 114 YlviG~~gsGKtt~l~~s-gl~~pl~~~~~~~~~~~~~~t~~c~wwf~~---~avliDtaG~y~~~~~~~~~~~~~W~~f 189 (1169)
T TIGR03348 114 YLVIGPPGSGKTTLLQNS-GLKFPLAERLGAAALRGVGGTRNCDWWFTD---EAVLIDTAGRYTTQDSDPEEDAAAWLGF 189 (1169)
T ss_pred EEEECCCCCchhHHHHhC-CCCCcCchhhccccccCCCCCcccceEecC---CEEEEcCCCccccCCCcccccHHHHHHH
Confidence 799999999999999876 44443211 011 1111111112222 2569999983211 1234444
Q ss_pred c---------cCCcEEEEEEeCCChhh-----HHhhhh--hhHHHHHhhhC-CCCCEEEEeeCcccc
Q 044772 91 Y---------RGADVFILAFSLISRPS-----YENISK--KKWVPELRHYA-PSVPIVLVGTKLDLR 140 (159)
Q Consensus 91 ~---------~~~~~~i~v~d~~~~~s-----~~~~~~--~~~~~~i~~~~-~~~piilv~nK~Dl~ 140 (159)
+ .-.+++|+++|+.+.-. ...... -..+.++.... -.+|+.|+.||+|+.
T Consensus 190 L~~L~k~R~r~plnGvil~vs~~~Ll~~~~~~~~~~a~~lR~rl~el~~~lg~~~PVYvv~Tk~Dll 256 (1169)
T TIGR03348 190 LGLLRKHRRRQPLNGVVVTVSLADLLTADPAERKAHARAIRQRLQELREQLGARFPVYLVLTKADLL 256 (1169)
T ss_pred HHHHHHhCCCCCCCeEEEEEEHHHHhCCCHHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEecchhh
Confidence 3 24899999999764321 111110 03344444443 489999999999975
No 334
>PRK12289 GTPase RsgA; Reviewed
Probab=98.12 E-value=3.4e-06 Score=65.67 Aligned_cols=23 Identities=22% Similarity=0.273 Sum_probs=20.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 044772 24 KCVTVRDGAVGKTCLLISYTGNT 46 (159)
Q Consensus 24 ki~vvG~~~~GKSsli~~l~~~~ 46 (159)
.++|+|++|||||||+|.|++..
T Consensus 174 i~v~iG~SgVGKSSLIN~L~~~~ 196 (352)
T PRK12289 174 ITVVAGPSGVGKSSLINRLIPDV 196 (352)
T ss_pred eEEEEeCCCCCHHHHHHHHcCcc
Confidence 47999999999999999999765
No 335
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=98.10 E-value=6.3e-06 Score=63.61 Aligned_cols=61 Identities=18% Similarity=0.097 Sum_probs=37.5
Q ss_pred EEEEEEEeCCCcccccccccccccCCcEEEEEEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCccccc
Q 044772 69 TVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRK 141 (159)
Q Consensus 69 ~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~ 141 (159)
.+.+.|.||+|..+-... ....+|.++++.+....+....+.. ..++ ..-++|.||+|+..
T Consensus 148 g~d~viieT~Gv~qs~~~---i~~~aD~vlvv~~p~~gd~iq~~k~-gi~E--------~aDIiVVNKaDl~~ 208 (332)
T PRK09435 148 GYDVILVETVGVGQSETA---VAGMVDFFLLLQLPGAGDELQGIKK-GIME--------LADLIVINKADGDN 208 (332)
T ss_pred CCCEEEEECCCCccchhH---HHHhCCEEEEEecCCchHHHHHHHh-hhhh--------hhheEEeehhcccc
Confidence 367889999986432222 3556999999876444444443321 1111 23489999999864
No 336
>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.08 E-value=1.7e-05 Score=61.41 Aligned_cols=123 Identities=20% Similarity=0.163 Sum_probs=74.3
Q ss_pred CcceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCc---ccceeeeeEEEEEE------CCeE-------------------
Q 044772 18 TATKFIKCVTVRDGAVGKTCLLISYTGNTFPTDY---VPTVFDNFSANVMV------DGRT------------------- 69 (159)
Q Consensus 18 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~---~~t~~~~~~~~~~~------~~~~------------------- 69 (159)
.-....=|+++|+-..|||||++.|+.+.+.... .||.. .+...++. ++..
T Consensus 54 dfd~KPmill~GqyStGKTtfi~yLle~dypg~riGpEPTtd-~Fi~vM~G~~e~~ipGnal~vd~~~pF~gL~~FG~af 132 (532)
T KOG1954|consen 54 DFDAKPMILLVGQYSTGKTTFIRYLLEQDYPGLRIGPEPTTD-RFIAVMHGDEEGSIPGNALVVDAKKPFRGLNKFGNAF 132 (532)
T ss_pred ccccCceEEEEeccccchhHHHHHHHhCCCCccccCCCCCcc-eeEEEEecCcccccCCceeeecCCCchhhhhhhHHHH
Confidence 3344456999999999999999999999987542 22221 11111111 1100
Q ss_pred --------------EEEEEEeCCCcc-----------cccccccccccCCcEEEEEEeCCChhhHHhhhhhhHHHHHhhh
Q 044772 70 --------------VNLGLWDTAGQE-----------DYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHY 124 (159)
Q Consensus 70 --------------~~~~i~D~~g~~-----------~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~ 124 (159)
-.+.+.|+||.- .|...+.=+...+|.|+++||....+--.+.+ ..+..++.+
T Consensus 133 lnRf~csqmp~~vLe~vtiVdtPGILsgeKQrisR~ydF~~v~~WFaeR~D~IiLlfD~hKLDIsdEf~--~vi~aLkG~ 210 (532)
T KOG1954|consen 133 LNRFMCSQLPNQVLESVTIVDTPGILSGEKQRISRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFK--RVIDALKGH 210 (532)
T ss_pred HHHHHHhcCChhhhhheeeeccCcccccchhcccccCChHHHHHHHHHhccEEEEEechhhccccHHHH--HHHHHhhCC
Confidence 126689999831 12233344567899999999976544333333 445555443
Q ss_pred CCCCCEEEEeeCcccccCccc
Q 044772 125 APSVPIVLVGTKLDLRKDRQF 145 (159)
Q Consensus 125 ~~~~piilv~nK~Dl~~~r~v 145 (159)
.-.+=||.||.|..+..|.
T Consensus 211 --EdkiRVVLNKADqVdtqqL 229 (532)
T KOG1954|consen 211 --EDKIRVVLNKADQVDTQQL 229 (532)
T ss_pred --cceeEEEeccccccCHHHH
Confidence 3456778899998875553
No 337
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=98.08 E-value=4.9e-06 Score=63.15 Aligned_cols=25 Identities=24% Similarity=0.231 Sum_probs=22.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCC
Q 044772 23 IKCVTVRDGAVGKTCLLISYTGNTF 47 (159)
Q Consensus 23 ~ki~vvG~~~~GKSsli~~l~~~~~ 47 (159)
..++++|++|+|||||+|.|.+...
T Consensus 162 k~~~~~G~sg~GKSTlin~l~~~~~ 186 (287)
T cd01854 162 KTSVLVGQSGVGKSTLINALLPDLD 186 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHhchhh
Confidence 5799999999999999999997653
No 338
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=98.07 E-value=4.6e-06 Score=61.91 Aligned_cols=24 Identities=21% Similarity=0.236 Sum_probs=21.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCC
Q 044772 23 IKCVTVRDGAVGKTCLLISYTGNT 46 (159)
Q Consensus 23 ~ki~vvG~~~~GKSsli~~l~~~~ 46 (159)
..++++|++|||||||+|+|.+..
T Consensus 121 ~~~~~~G~sgvGKStLiN~L~~~~ 144 (245)
T TIGR00157 121 RISVFAGQSGVGKSSLINALDPSV 144 (245)
T ss_pred CEEEEECCCCCCHHHHHHHHhhhh
Confidence 468999999999999999999764
No 339
>COG1162 Predicted GTPases [General function prediction only]
Probab=98.04 E-value=1e-05 Score=61.16 Aligned_cols=22 Identities=23% Similarity=0.296 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 044772 24 KCVTVRDGAVGKTCLLISYTGN 45 (159)
Q Consensus 24 ki~vvG~~~~GKSsli~~l~~~ 45 (159)
-.+++|++|||||||+|+|...
T Consensus 166 ~svl~GqSGVGKSSLiN~L~p~ 187 (301)
T COG1162 166 ITVLLGQSGVGKSTLINALLPE 187 (301)
T ss_pred eEEEECCCCCcHHHHHHhhCch
Confidence 6789999999999999999864
No 340
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=98.02 E-value=1e-05 Score=63.36 Aligned_cols=24 Identities=21% Similarity=0.184 Sum_probs=21.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCC
Q 044772 23 IKCVTVRDGAVGKTCLLISYTGNT 46 (159)
Q Consensus 23 ~ki~vvG~~~~GKSsli~~l~~~~ 46 (159)
.+++++|.+|||||||+|+|++..
T Consensus 155 ~~v~~vG~~nvGKStliN~l~~~~ 178 (360)
T TIGR03597 155 KDVYVVGVTNVGKSSLINKLLKQN 178 (360)
T ss_pred CeEEEECCCCCCHHHHHHHHHhhc
Confidence 489999999999999999999753
No 341
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=98.01 E-value=3.3e-05 Score=59.90 Aligned_cols=83 Identities=23% Similarity=0.141 Sum_probs=54.1
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCC-CCccc-ceeeeeEE-EEE----------EC----CeEEEEEEEeCCCcc---
Q 044772 22 FIKCVTVRDGAVGKTCLLISYTGNTFP-TDYVP-TVFDNFSA-NVM----------VD----GRTVNLGLWDTAGQE--- 81 (159)
Q Consensus 22 ~~ki~vvG~~~~GKSsli~~l~~~~~~-~~~~~-t~~~~~~~-~~~----------~~----~~~~~~~i~D~~g~~--- 81 (159)
.+++-+||.|+||||||.|.+...... .+|.- |++.+... .+. .. -....+.++|++|--
T Consensus 2 ~l~~GIVGlPNVGKSTlFnAlT~~~a~~aNYPF~TIePN~Giv~v~d~rl~~L~~~~~c~~k~~~~~ve~vDIAGLV~GA 81 (372)
T COG0012 2 SLKIGIVGLPNVGKSTLFNALTKAGAEIANYPFCTIEPNVGVVYVPDCRLDELAEIVKCPPKIRPAPVEFVDIAGLVKGA 81 (372)
T ss_pred CceeEEecCCCCcHHHHHHHHHcCCccccCCCcccccCCeeEEecCchHHHHHHHhcCCCCcEEeeeeEEEEecccCCCc
Confidence 368899999999999999999977643 44443 33433311 111 01 134668899998732
Q ss_pred ----cccccccccccCCcEEEEEEeCC
Q 044772 82 ----DYNRLRPLSYRGADVFILAFSLI 104 (159)
Q Consensus 82 ----~~~~~~~~~~~~~~~~i~v~d~~ 104 (159)
-..+..-..++.+|+++-|+++.
T Consensus 82 s~GeGLGNkFL~~IRevdaI~hVVr~f 108 (372)
T COG0012 82 SKGEGLGNKFLDNIREVDAIIHVVRCF 108 (372)
T ss_pred ccCCCcchHHHHhhhhcCeEEEEEEec
Confidence 12233345578899999998876
No 342
>KOG0085 consensus G protein subunit Galphaq/Galphay, small G protein superfamily [Signal transduction mechanisms]
Probab=98.01 E-value=1.2e-06 Score=63.81 Aligned_cols=75 Identities=16% Similarity=0.245 Sum_probs=50.5
Q ss_pred eEEEEEEEeCCCcccccccccccccCCcEEEEEEeCC----------ChhhHHhhhhhhHHHHHhhhC--CCCCEEEEee
Q 044772 68 RTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLI----------SRPSYENISKKKWVPELRHYA--PSVPIVLVGT 135 (159)
Q Consensus 68 ~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~----------~~~s~~~~~~~~~~~~i~~~~--~~~piilv~n 135 (159)
..+.+.+.|.+|+-.-...|.+++.+.-.++|....+ +....++.. .++..|..+. .+.++|+..|
T Consensus 197 ~~iifrmvDvGGqrserrKWIHCFEnvtsi~fLvaLSEYDQvL~E~dnENRMeESk--ALFrTIi~yPWF~nssVIlFLN 274 (359)
T KOG0085|consen 197 QKIIFRMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQVLVESDNENRMEESK--ALFRTIITYPWFQNSSVILFLN 274 (359)
T ss_pred hhheeeeeecCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHccchhhHHHHH--HHHHHHhccccccCCceEEEec
Confidence 3455778888888777788888888876666654433 233333333 4555555553 5789999999
Q ss_pred CcccccCcc
Q 044772 136 KLDLRKDRQ 144 (159)
Q Consensus 136 K~Dl~~~r~ 144 (159)
|.|+.+++-
T Consensus 275 KkDlLEekI 283 (359)
T KOG0085|consen 275 KKDLLEEKI 283 (359)
T ss_pred hhhhhhhhh
Confidence 999876554
No 343
>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain. Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein
Probab=98.01 E-value=2.7e-05 Score=57.01 Aligned_cols=84 Identities=20% Similarity=0.147 Sum_probs=47.2
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcC--CCCCCc--ccceeeeeEEEEEE-CCeEEEEEEEeCCCcccccc------cccc
Q 044772 21 KFIKCVTVRDGAVGKTCLLISYTGN--TFPTDY--VPTVFDNFSANVMV-DGRTVNLGLWDTAGQEDYNR------LRPL 89 (159)
Q Consensus 21 ~~~ki~vvG~~~~GKSsli~~l~~~--~~~~~~--~~t~~~~~~~~~~~-~~~~~~~~i~D~~g~~~~~~------~~~~ 89 (159)
...-|.|+|++++|||+|+|+|++. .|.... .+++.-.......+ .+....+.++||+|...... ....
T Consensus 6 ~v~vvsv~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~gi~~~~~~~~~~~~~~v~~lDteG~~~~~~~~~~~~~~~~ 85 (224)
T cd01851 6 PVAVVSVFGPQSSGKSFLLNHLFGTLSGFDVMDTSQQTTKGIWMWSVPFKLGKEHAVLLLDTEGTDGRERGEFEDDARLF 85 (224)
T ss_pred CEEEEEEECCCCCCHHHHHHHHhCCCCCeEecCCCCCCccceEEEeccccCCCcceEEEEecCCcCccccCchhhhhHHH
Confidence 3456889999999999999999988 554221 11111111111111 12345799999999654322 1122
Q ss_pred cccC--CcEEEEEEeCC
Q 044772 90 SYRG--ADVFILAFSLI 104 (159)
Q Consensus 90 ~~~~--~~~~i~v~d~~ 104 (159)
.+.. ++.+|+..+..
T Consensus 86 ~l~~llss~~i~n~~~~ 102 (224)
T cd01851 86 ALATLLSSVLIYNSWET 102 (224)
T ss_pred HHHHHHhCEEEEeccCc
Confidence 2223 66666655544
No 344
>PRK00098 GTPase RsgA; Reviewed
Probab=97.98 E-value=1e-05 Score=61.77 Aligned_cols=25 Identities=24% Similarity=0.187 Sum_probs=21.8
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCC
Q 044772 22 FIKCVTVRDGAVGKTCLLISYTGNT 46 (159)
Q Consensus 22 ~~ki~vvG~~~~GKSsli~~l~~~~ 46 (159)
...++++|++|+|||||+|.|++..
T Consensus 164 gk~~~~~G~sgvGKStlin~l~~~~ 188 (298)
T PRK00098 164 GKVTVLAGQSGVGKSTLLNALAPDL 188 (298)
T ss_pred CceEEEECCCCCCHHHHHHHHhCCc
Confidence 3468999999999999999998755
No 345
>KOG0461 consensus Selenocysteine-specific elongation factor [Translation, ribosomal structure and biogenesis]
Probab=97.90 E-value=9e-05 Score=57.11 Aligned_cols=113 Identities=20% Similarity=0.178 Sum_probs=66.3
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCC----CCCCcccc-----eeeeeEEEEEE-------CCeEEEEEEEeCCCccccc
Q 044772 21 KFIKCVTVRDGAVGKTCLLISYTGNT----FPTDYVPT-----VFDNFSANVMV-------DGRTVNLGLWDTAGQEDYN 84 (159)
Q Consensus 21 ~~~ki~vvG~~~~GKSsli~~l~~~~----~~~~~~~t-----~~~~~~~~~~~-------~~~~~~~~i~D~~g~~~~~ 84 (159)
..+++-++|.-.+|||+|..+|..-. |......+ ..-.++. +.. .++..++.+.|+||+...-
T Consensus 6 ~n~N~GiLGHvDSGKTtLarals~~~STaAFDk~pqS~eRgiTLDLGFS~-~~v~~parLpq~e~lq~tlvDCPGHasLI 84 (522)
T KOG0461|consen 6 SNLNLGILGHVDSGKTTLARALSELGSTAAFDKHPQSTERGITLDLGFST-MTVLSPARLPQGEQLQFTLVDCPGHASLI 84 (522)
T ss_pred ceeeeeeEeeccCchHHHHHHHHhhccchhhccCCcccccceeEeeccee-eecccccccCccccceeEEEeCCCcHHHH
Confidence 34899999999999999999986322 21111111 1111211 111 3455788999999987554
Q ss_pred ccccccccCCcEEEEEEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCccc
Q 044772 85 RLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDL 139 (159)
Q Consensus 85 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl 139 (159)
+.....-.-.|..++|+|+...-.-+.+.. ..+..+. ....++|.||+|+
T Consensus 85 RtiiggaqiiDlm~lviDv~kG~QtQtAEc-Liig~~~----c~klvvvinkid~ 134 (522)
T KOG0461|consen 85 RTIIGGAQIIDLMILVIDVQKGKQTQTAEC-LIIGELL----CKKLVVVINKIDV 134 (522)
T ss_pred HHHHhhhheeeeeeEEEehhcccccccchh-hhhhhhh----ccceEEEEecccc
Confidence 433333334567789999875444444432 3333333 2456777777775
No 346
>PRK13796 GTPase YqeH; Provisional
Probab=97.87 E-value=1.9e-05 Score=61.90 Aligned_cols=25 Identities=20% Similarity=0.080 Sum_probs=21.8
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCC
Q 044772 22 FIKCVTVRDGAVGKTCLLISYTGNT 46 (159)
Q Consensus 22 ~~ki~vvG~~~~GKSsli~~l~~~~ 46 (159)
..++.++|.+|||||||+|+|++..
T Consensus 160 ~~~v~vvG~~NvGKSTLiN~L~~~~ 184 (365)
T PRK13796 160 GRDVYVVGVTNVGKSTLINRIIKEI 184 (365)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHhhc
Confidence 3479999999999999999998643
No 347
>KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only]
Probab=97.82 E-value=4.4e-05 Score=61.24 Aligned_cols=55 Identities=16% Similarity=0.125 Sum_probs=40.3
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccee-eeeEEEEEECCeEEEEEEEeCCCc
Q 044772 22 FIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVF-DNFSANVMVDGRTVNLGLWDTAGQ 80 (159)
Q Consensus 22 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~i~D~~g~ 80 (159)
.+.|=+||-|||||||+||.|.+.+-.+-. .|.| +.+.+++.+... +.++|+||-
T Consensus 314 ~vtVG~VGYPNVGKSSTINaLvG~KkVsVS-~TPGkTKHFQTi~ls~~---v~LCDCPGL 369 (562)
T KOG1424|consen 314 VVTVGFVGYPNVGKSSTINALVGRKKVSVS-STPGKTKHFQTIFLSPS---VCLCDCPGL 369 (562)
T ss_pred eeEEEeecCCCCchhHHHHHHhcCceeeee-cCCCCcceeEEEEcCCC---ceecCCCCc
Confidence 688999999999999999999998865442 2333 333445555543 679999994
No 348
>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
Probab=97.82 E-value=3.6e-05 Score=58.03 Aligned_cols=121 Identities=19% Similarity=0.125 Sum_probs=71.1
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcC---CCC---CCcccce--------e-eeeEEEEEECCeEEEEEEEeCCCccccc
Q 044772 20 TKFIKCVTVRDGAVGKTCLLISYTGN---TFP---TDYVPTV--------F-DNFSANVMVDGRTVNLGLWDTAGQEDYN 84 (159)
Q Consensus 20 ~~~~ki~vvG~~~~GKSsli~~l~~~---~~~---~~~~~t~--------~-~~~~~~~~~~~~~~~~~i~D~~g~~~~~ 84 (159)
...++|-.||.-.=|||||...+..- ++. ..|..-. + .....++.+....-.+...|+||+..|-
T Consensus 10 kphVNigtiGHvdHGKTTLtaAit~~la~~~~~~~~~y~~id~aPeEk~rGITIntahveyet~~rhyahVDcPGHaDYv 89 (394)
T COG0050 10 KPHVNVGTIGHVDHGKTTLTAAITTVLAKKGGAEAKAYDQIDNAPEEKARGITINTAHVEYETANRHYAHVDCPGHADYV 89 (394)
T ss_pred CCeeEEEEeccccCchhhHHHHHHHHHHhhccccccchhhhccCchHhhcCceeccceeEEecCCceEEeccCCChHHHH
Confidence 35689999999999999998766421 110 1111100 0 1111222332222236688999998776
Q ss_pred ccccccccCCcEEEEEEeCCChhhHHhhhhhhHHHHHhhhCCCC-CEEEEeeCcccccCccc
Q 044772 85 RLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSV-PIVLVGTKLDLRKDRQF 145 (159)
Q Consensus 85 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~-piilv~nK~Dl~~~r~v 145 (159)
.....--.+.|+.|+|++.++-.--+.... -++... . .+ .++++.||+|+.+++..
T Consensus 90 KNMItgAaqmDgAILVVsA~dGpmPqTrEH-iLlarq---v-Gvp~ivvflnK~Dmvdd~el 146 (394)
T COG0050 90 KNMITGAAQMDGAILVVAATDGPMPQTREH-ILLARQ---V-GVPYIVVFLNKVDMVDDEEL 146 (394)
T ss_pred HHHhhhHHhcCccEEEEEcCCCCCCcchhh-hhhhhh---c-CCcEEEEEEecccccCcHHH
Confidence 544444457899999999987544443331 222211 1 34 47889999999875543
No 349
>KOG0448 consensus Mitofusin 1 GTPase, involved in mitochondrila biogenesis [Posttranslational modification, protein turnover, chaperones]
Probab=97.80 E-value=0.00015 Score=59.97 Aligned_cols=118 Identities=14% Similarity=0.164 Sum_probs=70.8
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCC-cccceeeee---------------------------------------
Q 044772 20 TKFIKCVTVRDGAVGKTCLLISYTGNTFPTD-YVPTVFDNF--------------------------------------- 59 (159)
Q Consensus 20 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~-~~~t~~~~~--------------------------------------- 59 (159)
...-||++.|..+.||||++|.++..+..+. -.+++....
T Consensus 107 r~~mKV~ifGrts~GKSt~iNAmL~~klLP~g~gh~TncF~~VegadG~e~vl~~~~s~ek~d~~ti~~~~haL~~~~~~ 186 (749)
T KOG0448|consen 107 RRHMKVAIFGRTSAGKSTVINAMLHKKLLPSGIGHTTNCFLEVEGADGAEAVLATEGSEEKIDMKTINQLAHALKPDKDL 186 (749)
T ss_pred hcccEEEEeCCCCCcHHHHHHHHHHHhhCcccccccceeeeeecccCCcceeeccCCCcccccHHHHhHHHHhcCccccc
Confidence 4567999999999999999999998876432 111111000
Q ss_pred ----EEEEEECCe-----EEEEEEEeCCCcc---cccccccccccCCcEEEEEEeCCChhhHHhhhhhhHHHHHhhhCCC
Q 044772 60 ----SANVMVDGR-----TVNLGLWDTAGQE---DYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPS 127 (159)
Q Consensus 60 ----~~~~~~~~~-----~~~~~i~D~~g~~---~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~~~ 127 (159)
--.+..+.. .-.+.+.|.||-. ....-...++.++|++|+|.+..+.-+.. .. .++....+- +
T Consensus 187 ~~~sLlrV~~p~~~csLLrnDivliDsPGld~~se~tswid~~cldaDVfVlV~NaEntlt~s--ek-~Ff~~vs~~--K 261 (749)
T KOG0448|consen 187 GAGSLLRVFWPDDKCSLLRNDIVLIDSPGLDVDSELTSWIDSFCLDADVFVLVVNAENTLTLS--EK-QFFHKVSEE--K 261 (749)
T ss_pred CcceEEEEEecCccchhhhccceeccCCCCCCchhhhHHHHHHhhcCCeEEEEecCccHhHHH--HH-HHHHHhhcc--C
Confidence 000111111 0135567777743 23334466778899999999887644333 32 565555442 5
Q ss_pred CCEEEEeeCcccccC
Q 044772 128 VPIVLVGTKLDLRKD 142 (159)
Q Consensus 128 ~piilv~nK~Dl~~~ 142 (159)
+.|.|+-||.|....
T Consensus 262 pniFIlnnkwDasas 276 (749)
T KOG0448|consen 262 PNIFILNNKWDASAS 276 (749)
T ss_pred CcEEEEechhhhhcc
Confidence 557778888897544
No 350
>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1). The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.
Probab=97.80 E-value=6.3e-05 Score=42.83 Aligned_cols=45 Identities=20% Similarity=0.356 Sum_probs=29.7
Q ss_pred CcEEEEEEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCcc
Q 044772 94 ADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLD 138 (159)
Q Consensus 94 ~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~D 138 (159)
.++++|++|.+..-.+.-.+-..++.+++....+.|+++|.||+|
T Consensus 14 ~~~ilfi~D~Se~CGysie~Q~~L~~~ik~~F~~~P~i~V~nK~D 58 (58)
T PF06858_consen 14 ADAILFIIDPSEQCGYSIEEQLSLFKEIKPLFPNKPVIVVLNKID 58 (58)
T ss_dssp -SEEEEEE-TT-TTSS-HHHHHHHHHHHHHHTTTS-EEEEE--TT
T ss_pred cceEEEEEcCCCCCCCCHHHHHHHHHHHHHHcCCCCEEEEEeccC
Confidence 568999999986655422221278889998888999999999998
No 351
>KOG0467 consensus Translation elongation factor 2/ribosome biogenesis protein RIA1 and related proteins [Translation, ribosomal structure and biogenesis]
Probab=97.79 E-value=8.6e-05 Score=62.07 Aligned_cols=115 Identities=16% Similarity=0.205 Sum_probs=76.9
Q ss_pred CcceeeEEEEEcCCCCCHHHHHHHHhcCC--CCCCcccce------eeeeE-------EEEEECCeEEEEEEEeCCCccc
Q 044772 18 TATKFIKCVTVRDGAVGKTCLLISYTGNT--FPTDYVPTV------FDNFS-------ANVMVDGRTVNLGLWDTAGQED 82 (159)
Q Consensus 18 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~--~~~~~~~t~------~~~~~-------~~~~~~~~~~~~~i~D~~g~~~ 82 (159)
......+++++.+-.=|||||...|+... +.+...++. +++-. ..+..-...+.+++.|.||+-+
T Consensus 5 ~~~~irn~~~vahvdhgktsladsl~asngvis~rlagkirfld~redeq~rgitmkss~is~~~~~~~~nlidspghvd 84 (887)
T KOG0467|consen 5 GSEGIRNICLVAHVDHGKTSLADSLVASNGVISSRLAGKIRFLDTREDEQTRGITMKSSAISLLHKDYLINLIDSPGHVD 84 (887)
T ss_pred CCCceeEEEEEEEecCCccchHHHHHhhccEechhhccceeeccccchhhhhceeeeccccccccCceEEEEecCCCccc
Confidence 34567789999999999999999887433 222211111 11111 1112223557799999999999
Q ss_pred ccccccccccCCcEEEEEEeCCChhhHHhhhh--hhHHHHHhhhCCCCCEEEEeeCccc
Q 044772 83 YNRLRPLSYRGADVFILAFSLISRPSYENISK--KKWVPELRHYAPSVPIVLVGTKLDL 139 (159)
Q Consensus 83 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~--~~~~~~i~~~~~~~piilv~nK~Dl 139 (159)
|.+.......-+|++++.+|+...-.-+.... .-|.+ +...++|.||+|.
T Consensus 85 f~sevssas~l~d~alvlvdvvegv~~qt~~vlrq~~~~-------~~~~~lvinkidr 136 (887)
T KOG0467|consen 85 FSSEVSSASRLSDGALVLVDVVEGVCSQTYAVLRQAWIE-------GLKPILVINKIDR 136 (887)
T ss_pred hhhhhhhhhhhcCCcEEEEeeccccchhHHHHHHHHHHc-------cCceEEEEehhhh
Confidence 99998888888999999999875432222210 13444 5778999999993
No 352
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=97.78 E-value=2.4e-05 Score=55.60 Aligned_cols=52 Identities=23% Similarity=0.407 Sum_probs=38.7
Q ss_pred ccccccccccCCcEEEEEEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCccccc
Q 044772 83 YNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRK 141 (159)
Q Consensus 83 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~ 141 (159)
|...+..++++++++++|+|+.++.. .|...+.....+.|+++|+||+|+..
T Consensus 24 ~~~~l~~~~~~ad~il~VvD~~~~~~-------~~~~~l~~~~~~~~~ilV~NK~Dl~~ 75 (190)
T cd01855 24 ILNLLSSISPKKALVVHVVDIFDFPG-------SLIPRLRLFGGNNPVILVGNKIDLLP 75 (190)
T ss_pred HHHHHHhcccCCcEEEEEEECccCCC-------ccchhHHHhcCCCcEEEEEEchhcCC
Confidence 57778889999999999999987542 23333322234689999999999864
No 353
>KOG0447 consensus Dynamin-like GTP binding protein [General function prediction only]
Probab=97.77 E-value=0.00015 Score=58.99 Aligned_cols=72 Identities=18% Similarity=0.151 Sum_probs=46.0
Q ss_pred EEEEEEeCCCcc-------------cccccccccccCCcEEEEEEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeC
Q 044772 70 VNLGLWDTAGQE-------------DYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTK 136 (159)
Q Consensus 70 ~~~~i~D~~g~~-------------~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK 136 (159)
-.+++.|+||.- ....+.++|+.+.+++|+|+.-.+-+....... ++...+.. .+..-|+|.+|
T Consensus 412 qRMVLVDLPGvIsTvT~dMA~dTKd~I~~msKayM~NPNAIILCIQDGSVDAERSnVT-DLVsq~DP--~GrRTIfVLTK 488 (980)
T KOG0447|consen 412 QRMVLVDLPGVINTVTSGMAPDTKETIFSISKAYMQNPNAIILCIQDGSVDAERSIVT-DLVSQMDP--HGRRTIFVLTK 488 (980)
T ss_pred ceeEEecCCchhhhhcccccccchHHHHHHHHHHhcCCCeEEEEeccCCcchhhhhHH-HHHHhcCC--CCCeeEEEEee
Confidence 457889999831 223456788999999999986443333322222 33333332 25667999999
Q ss_pred cccccCcc
Q 044772 137 LDLRKDRQ 144 (159)
Q Consensus 137 ~Dl~~~r~ 144 (159)
.|+.+...
T Consensus 489 VDlAEknl 496 (980)
T KOG0447|consen 489 VDLAEKNV 496 (980)
T ss_pred cchhhhcc
Confidence 99987643
No 354
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=97.76 E-value=0.00014 Score=50.44 Aligned_cols=21 Identities=29% Similarity=0.112 Sum_probs=18.9
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 044772 25 CVTVRDGAVGKTCLLISYTGN 45 (159)
Q Consensus 25 i~vvG~~~~GKSsli~~l~~~ 45 (159)
++++|..|+|||||+++++..
T Consensus 3 ~~l~G~~GsGKTtl~~~l~~~ 23 (158)
T cd03112 3 TVLTGFLGAGKTTLLNHILTE 23 (158)
T ss_pred EEEEECCCCCHHHHHHHHHhc
Confidence 678999999999999998865
No 355
>PRK13695 putative NTPase; Provisional
Probab=97.73 E-value=9.2e-05 Score=51.94 Aligned_cols=22 Identities=27% Similarity=0.318 Sum_probs=19.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhc
Q 044772 23 IKCVTVRDGAVGKTCLLISYTG 44 (159)
Q Consensus 23 ~ki~vvG~~~~GKSsli~~l~~ 44 (159)
.|++++|++|+|||||+..+.+
T Consensus 1 ~~i~ltG~~G~GKTTll~~i~~ 22 (174)
T PRK13695 1 MKIGITGPPGVGKTTLVLKIAE 22 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999998653
No 356
>KOG0464 consensus Elongation factor G [Translation, ribosomal structure and biogenesis]
Probab=97.73 E-value=8.4e-06 Score=64.06 Aligned_cols=122 Identities=19% Similarity=0.110 Sum_probs=87.3
Q ss_pred CCCCCcceeeEEEEEcCCCCCHHHHHHHHhcC--CCCC--C--cccce----------eeee-EEEEEECCeEEEEEEEe
Q 044772 14 TTTTTATKFIKCVTVRDGAVGKTCLLISYTGN--TFPT--D--YVPTV----------FDNF-SANVMVDGRTVNLGLWD 76 (159)
Q Consensus 14 ~~~~~~~~~~ki~vvG~~~~GKSsli~~l~~~--~~~~--~--~~~t~----------~~~~-~~~~~~~~~~~~~~i~D 76 (159)
...+...+..+|-++..-.+|||+.-.|++.- .... . ...|. +.+. +.-+.+++...++++.|
T Consensus 29 ~~~p~~akirnigiiahidagktttterily~ag~~~s~g~vddgdtvtdfla~erergitiqsaav~fdwkg~rinlid 108 (753)
T KOG0464|consen 29 IINPAIAKIRNIGIIAHIDAGKTTTTERILYLAGAIHSAGDVDDGDTVTDFLAIERERGITIQSAAVNFDWKGHRINLID 108 (753)
T ss_pred CCCCchhhhhcceeEEEecCCCchhHHHHHHHhhhhhcccccCCCchHHHHHHHHHhcCceeeeeeeecccccceEeeec
Confidence 33455667778999999999999999988632 1110 0 00010 1111 23455677888899999
Q ss_pred CCCcccccccccccccCCcEEEEEEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCcccc
Q 044772 77 TAGQEDYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLR 140 (159)
Q Consensus 77 ~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~ 140 (159)
+||+-.|.-....+++-.|+++.|||.+....-+.+. .|-+.-+ -++|-+++.||+|..
T Consensus 109 tpghvdf~leverclrvldgavav~dasagve~qtlt--vwrqadk---~~ip~~~finkmdk~ 167 (753)
T KOG0464|consen 109 TPGHVDFRLEVERCLRVLDGAVAVFDASAGVEAQTLT--VWRQADK---FKIPAHCFINKMDKL 167 (753)
T ss_pred CCCcceEEEEHHHHHHHhcCeEEEEeccCCcccceee--eehhccc---cCCchhhhhhhhhhh
Confidence 9999999999999999999999999988665555555 6655432 378999999999964
No 357
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=97.72 E-value=4.1e-05 Score=51.92 Aligned_cols=52 Identities=15% Similarity=0.211 Sum_probs=35.9
Q ss_pred ccccCCcEEEEEEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCcccccCc
Q 044772 89 LSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKDR 143 (159)
Q Consensus 89 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~r 143 (159)
..+.++|.+++|+|+.++.+........|+... ..+.|+++|+||+|+..+.
T Consensus 7 ~~i~~aD~vl~ViD~~~p~~~~~~~l~~~l~~~---~~~k~~iivlNK~DL~~~~ 58 (141)
T cd01857 7 RVVERSDIVVQIVDARNPLLFRPPDLERYVKEV---DPRKKNILLLNKADLLTEE 58 (141)
T ss_pred HHHhhCCEEEEEEEccCCcccCCHHHHHHHHhc---cCCCcEEEEEechhcCCHH
Confidence 446789999999999887654422111444432 2468999999999996433
No 358
>KOG1491 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=97.67 E-value=0.0002 Score=54.98 Aligned_cols=83 Identities=19% Similarity=0.107 Sum_probs=52.7
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCC-ccc-ceeeeeEEEEEE---------------CCeEEEEEEEeCCCccc
Q 044772 20 TKFIKCVTVRDGAVGKTCLLISYTGNTFPTD-YVP-TVFDNFSANVMV---------------DGRTVNLGLWDTAGQED 82 (159)
Q Consensus 20 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~-~~~-t~~~~~~~~~~~---------------~~~~~~~~i~D~~g~~~ 82 (159)
...+++=+||.|+||||||+|.|........ +.- |++.+.. .+.+ ...+..++++|+.|--.
T Consensus 18 ~~~lkiGIVGlPNvGKST~fnalT~~~a~~~NfPF~TIdPn~a-~V~v~d~Rfd~l~~~Y~~~~~vpa~l~v~DIAGLvk 96 (391)
T KOG1491|consen 18 GNNLKIGIVGLPNVGKSTFFNALTKSKAGAANFPFCTIDPNEA-RVEVPDSRFDLLCPIYGPKSKVPAFLTVYDIAGLVK 96 (391)
T ss_pred CCcceeeEeeCCCCchHHHHHHHhcCCCCccCCCcceeccccc-eeecCchHHHHHHHhcCCcceeeeeEEEEeeccccc
Confidence 4567999999999999999999997765433 222 3443332 1222 12456799999987322
Q ss_pred -------ccccccccccCCcEEEEEEeC
Q 044772 83 -------YNRLRPLSYRGADVFILAFSL 103 (159)
Q Consensus 83 -------~~~~~~~~~~~~~~~i~v~d~ 103 (159)
..+..-..++.+|+++=|+++
T Consensus 97 GAs~G~GLGN~FLs~iR~vDaifhVVr~ 124 (391)
T KOG1491|consen 97 GASAGEGLGNKFLSHIRHVDAIFHVVRA 124 (391)
T ss_pred CcccCcCchHHHHHhhhhccceeEEEEe
Confidence 122233445678888777664
No 359
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=97.67 E-value=0.00012 Score=57.52 Aligned_cols=26 Identities=23% Similarity=0.107 Sum_probs=21.6
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCC
Q 044772 22 FIKCVTVRDGAVGKTCLLISYTGNTF 47 (159)
Q Consensus 22 ~~ki~vvG~~~~GKSsli~~l~~~~~ 47 (159)
.-.|++|||.||||||-+.+|.....
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~ 228 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYV 228 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHH
Confidence 56799999999999999988765443
No 360
>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]
Probab=97.65 E-value=0.00026 Score=53.12 Aligned_cols=119 Identities=18% Similarity=0.223 Sum_probs=71.0
Q ss_pred CCcceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeee-----EEEEEECCeEEEEEEEeCCCccc-------cc
Q 044772 17 TTATKFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNF-----SANVMVDGRTVNLGLWDTAGQED-------YN 84 (159)
Q Consensus 17 ~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-----~~~~~~~~~~~~~~i~D~~g~~~-------~~ 84 (159)
......++|+-||..|.|||||+..|++.+|.....+-..... .+.+.-.+...++.+.|+.|... +.
T Consensus 37 v~~GF~FNilCvGETg~GKsTLmdtLFNt~f~~~p~~H~~~~V~L~~~TyelqEsnvrlKLtiv~tvGfGDQinK~~Syk 116 (406)
T KOG3859|consen 37 VSQGFCFNILCVGETGLGKSTLMDTLFNTKFESEPSTHTLPNVKLQANTYELQESNVRLKLTIVDTVGFGDQINKEDSYK 116 (406)
T ss_pred HhcCceEEEEEeccCCccHHHHHHHHhccccCCCCCccCCCCceeecchhhhhhcCeeEEEEEEeecccccccCcccccc
Confidence 3456889999999999999999999999998655332222111 12223356678899999988321 11
Q ss_pred c-------cccc-------------cccC--CcEEEEEEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCcccc
Q 044772 85 R-------LRPL-------------SYRG--ADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLR 140 (159)
Q Consensus 85 ~-------~~~~-------------~~~~--~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~ 140 (159)
. .... .+.+ .++.++.+..+. .++..++. ..+..+. .++.||-|+-|.|..
T Consensus 117 ~iVdyidaQFEaYLQEELKi~Rsl~~~hDsRiH~CLYFI~PTG-H~LKslDL-vtmk~Ld---skVNIIPvIAKaDti 189 (406)
T KOG3859|consen 117 PIVDYIDAQFEAYLQEELKIRRSLFTYHDSRIHVCLYFISPTG-HSLKSLDL-VTMKKLD---SKVNIIPVIAKADTI 189 (406)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhccCceEEEEEEecCCC-cchhHHHH-HHHHHHh---hhhhhHHHHHHhhhh
Confidence 1 0111 1233 445555555553 35666554 3444443 355666666677754
No 361
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=97.64 E-value=0.00073 Score=46.82 Aligned_cols=56 Identities=20% Similarity=0.194 Sum_probs=37.0
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCC
Q 044772 21 KFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTA 78 (159)
Q Consensus 21 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~ 78 (159)
...||.+-|+||||||||+.++...--... -+.+-.+..++.-++...-|.+.|+.
T Consensus 4 ~~mki~ITG~PGvGKtTl~~ki~e~L~~~g--~kvgGf~t~EVR~gGkR~GF~Ivdl~ 59 (179)
T COG1618 4 MAMKIFITGRPGVGKTTLVLKIAEKLREKG--YKVGGFITPEVREGGKRIGFKIVDLA 59 (179)
T ss_pred cceEEEEeCCCCccHHHHHHHHHHHHHhcC--ceeeeEEeeeeecCCeEeeeEEEEcc
Confidence 457999999999999999998863221111 11222334455566777777888876
No 362
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=97.61 E-value=2.4e-05 Score=61.28 Aligned_cols=55 Identities=22% Similarity=0.439 Sum_probs=43.5
Q ss_pred cccccccccccccCCcEEEEEEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCccccc
Q 044772 80 QEDYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRK 141 (159)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~ 141 (159)
.+.|..+...+++.++.+++|+|+.+... .|.+.+.+...+.|+++|+||+|+..
T Consensus 50 ~e~f~~~l~~~~~~~~~Il~VvD~~d~~~-------s~~~~l~~~~~~~piilV~NK~DLl~ 104 (360)
T TIGR03597 50 DDDFLNLLNSLGDSNALIVYVVDIFDFEG-------SLIPELKRFVGGNPVLLVGNKIDLLP 104 (360)
T ss_pred HHHHHHHHhhcccCCcEEEEEEECcCCCC-------CccHHHHHHhCCCCEEEEEEchhhCC
Confidence 45677788888889999999999865442 66666666656789999999999854
No 363
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.58 E-value=6.8e-05 Score=49.13 Aligned_cols=22 Identities=14% Similarity=0.104 Sum_probs=19.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 044772 24 KCVTVRDGAVGKTCLLISYTGN 45 (159)
Q Consensus 24 ki~vvG~~~~GKSsli~~l~~~ 45 (159)
.|+|.|++||||||+.+.|...
T Consensus 1 vI~I~G~~gsGKST~a~~La~~ 22 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAER 22 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999999753
No 364
>KOG0410 consensus Predicted GTP binding protein [General function prediction only]
Probab=97.56 E-value=0.00011 Score=56.14 Aligned_cols=116 Identities=18% Similarity=0.145 Sum_probs=69.6
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCC--cccceeeeeEEEEEECCeEEEEEEEeCCCcc-cccc-c------ccccc
Q 044772 22 FIKCVTVRDGAVGKTCLLISYTGNTFPTD--YVPTVFDNFSANVMVDGRTVNLGLWDTAGQE-DYNR-L------RPLSY 91 (159)
Q Consensus 22 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~--~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~-~~~~-~------~~~~~ 91 (159)
..-|.+||-.|+|||||+++|.+....++ ...|...+.. ..... ....+.+-||-|.- +..- . .-.-.
T Consensus 178 ~pviavVGYTNaGKsTLikaLT~Aal~p~drLFATLDpT~h-~a~Lp-sg~~vlltDTvGFisdLP~~LvaAF~ATLeeV 255 (410)
T KOG0410|consen 178 SPVIAVVGYTNAGKSTLIKALTKAALYPNDRLFATLDPTLH-SAHLP-SGNFVLLTDTVGFISDLPIQLVAAFQATLEEV 255 (410)
T ss_pred CceEEEEeecCccHHHHHHHHHhhhcCccchhheeccchhh-hccCC-CCcEEEEeechhhhhhCcHHHHHHHHHHHHHH
Confidence 34589999999999999999996555433 2333333221 11122 12236677887741 1111 1 12234
Q ss_pred cCCcEEEEEEeCCChhhHHhhhhhhHHHHHhhhC-CCC----CEEEEeeCccccc
Q 044772 92 RGADVFILAFSLISRPSYENISKKKWVPELRHYA-PSV----PIVLVGTKLDLRK 141 (159)
Q Consensus 92 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~-~~~----piilv~nK~Dl~~ 141 (159)
..+|.++=|.|+++|.-..... ..+..+.... +.. .++=|-||+|...
T Consensus 256 aeadlllHvvDiShP~ae~q~e--~Vl~vL~~igv~~~pkl~~mieVdnkiD~e~ 308 (410)
T KOG0410|consen 256 AEADLLLHVVDISHPNAEEQRE--TVLHVLNQIGVPSEPKLQNMIEVDNKIDYEE 308 (410)
T ss_pred hhcceEEEEeecCCccHHHHHH--HHHHHHHhcCCCcHHHHhHHHhhcccccccc
Confidence 6799999999999997665554 5555555443 222 3466778888754
No 365
>PRK08118 topology modulation protein; Reviewed
Probab=97.55 E-value=7.4e-05 Score=52.26 Aligned_cols=23 Identities=22% Similarity=0.303 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcC
Q 044772 23 IKCVTVRDGAVGKTCLLISYTGN 45 (159)
Q Consensus 23 ~ki~vvG~~~~GKSsli~~l~~~ 45 (159)
.||+|+|++|||||||..+|...
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~ 24 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEK 24 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 37999999999999999988744
No 366
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=97.53 E-value=0.00043 Score=55.28 Aligned_cols=23 Identities=22% Similarity=0.008 Sum_probs=20.0
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHh
Q 044772 21 KFIKCVTVRDGAVGKTCLLISYT 43 (159)
Q Consensus 21 ~~~ki~vvG~~~~GKSsli~~l~ 43 (159)
.+.-|+++|++||||||++.+|.
T Consensus 99 ~~~vi~lvG~~GvGKTTtaaKLA 121 (429)
T TIGR01425 99 KQNVIMFVGLQGSGKTTTCTKLA 121 (429)
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 35679999999999999998885
No 367
>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=97.52 E-value=0.0004 Score=56.87 Aligned_cols=111 Identities=19% Similarity=0.168 Sum_probs=63.7
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeeeEEEE-EECCeEEEEEEEeCCCcccccccccccccCCcEEE
Q 044772 20 TKFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANV-MVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADVFI 98 (159)
Q Consensus 20 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~-~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i 98 (159)
+.++-++|+|+||.|||||+..|...-... |+... ...+ -..+..-.+.++++|. ....++ ..-+-+|.++
T Consensus 67 PPPfIvavvGPpGtGKsTLirSlVrr~tk~----ti~~i-~GPiTvvsgK~RRiTflEcp~--Dl~~mi-DvaKIaDLVl 138 (1077)
T COG5192 67 PPPFIVAVVGPPGTGKSTLIRSLVRRFTKQ----TIDEI-RGPITVVSGKTRRITFLECPS--DLHQMI-DVAKIADLVL 138 (1077)
T ss_pred CCCeEEEeecCCCCChhHHHHHHHHHHHHh----hhhcc-CCceEEeecceeEEEEEeChH--HHHHHH-hHHHhhheeE
Confidence 455678899999999999998887432111 11111 1111 1345555688999883 333332 2234588899
Q ss_pred EEEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCcccccC
Q 044772 99 LAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKD 142 (159)
Q Consensus 99 ~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~ 142 (159)
+.+|.+=.-..... .++.-+.. ..-+.++-|.++.|+...
T Consensus 139 LlIdgnfGfEMETm---EFLnil~~-HGmPrvlgV~ThlDlfk~ 178 (1077)
T COG5192 139 LLIDGNFGFEMETM---EFLNILIS-HGMPRVLGVVTHLDLFKN 178 (1077)
T ss_pred EEeccccCceehHH---HHHHHHhh-cCCCceEEEEeecccccC
Confidence 99997732111111 33333332 223447889999998653
No 368
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=97.52 E-value=0.00015 Score=55.09 Aligned_cols=51 Identities=20% Similarity=0.221 Sum_probs=41.3
Q ss_pred cccccCCcEEEEEEeCCChh-hHHhhhhhhHHHHHhhhCCCCCEEEEeeCcccccC
Q 044772 88 PLSYRGADVFILAFSLISRP-SYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKD 142 (159)
Q Consensus 88 ~~~~~~~~~~i~v~d~~~~~-s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~ 142 (159)
+..+.++|.+++|+|+.++. ++..+. +|+..+.. .++|+++|+||+||...
T Consensus 73 ~~i~anvD~vllV~d~~~p~~s~~~ld--r~L~~~~~--~~ip~iIVlNK~DL~~~ 124 (287)
T cd01854 73 QVIAANVDQLVIVVSLNEPFFNPRLLD--RYLVAAEA--AGIEPVIVLTKADLLDD 124 (287)
T ss_pred eeEEEeCCEEEEEEEcCCCCCCHHHHH--HHHHHHHH--cCCCEEEEEEHHHCCCh
Confidence 34478999999999999887 777777 78776654 36899999999999654
No 369
>PRK12289 GTPase RsgA; Reviewed
Probab=97.50 E-value=0.00018 Score=56.16 Aligned_cols=53 Identities=26% Similarity=0.341 Sum_probs=39.7
Q ss_pred cccccccCCcEEEEEEeCCChh-hHHhhhhhhHHHHHhhhCCCCCEEEEeeCcccccC
Q 044772 86 LRPLSYRGADVFILAFSLISRP-SYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKD 142 (159)
Q Consensus 86 ~~~~~~~~~~~~i~v~d~~~~~-s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~ 142 (159)
+.+..+.++|.+++|+|+.++. .+..+. .|+..+.. .++|++||+||+||...
T Consensus 82 L~R~~~aNvD~vLlV~d~~~p~~~~~~Ld--R~L~~a~~--~~ip~ILVlNK~DLv~~ 135 (352)
T PRK12289 82 LDRPPVANADQILLVFALAEPPLDPWQLS--RFLVKAES--TGLEIVLCLNKADLVSP 135 (352)
T ss_pred eechhhhcCCEEEEEEECCCCCCCHHHHH--HHHHHHHH--CCCCEEEEEEchhcCCh
Confidence 3345688999999999998775 444455 77765532 47999999999999643
No 370
>PRK07261 topology modulation protein; Provisional
Probab=97.50 E-value=9.1e-05 Score=51.98 Aligned_cols=21 Identities=19% Similarity=0.202 Sum_probs=19.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 044772 24 KCVTVRDGAVGKTCLLISYTG 44 (159)
Q Consensus 24 ki~vvG~~~~GKSsli~~l~~ 44 (159)
+|+|+|++|+|||||...|..
T Consensus 2 ri~i~G~~GsGKSTla~~l~~ 22 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQ 22 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 799999999999999998864
No 371
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=97.49 E-value=9.2e-05 Score=49.87 Aligned_cols=20 Identities=15% Similarity=0.130 Sum_probs=18.3
Q ss_pred EEEEcCCCCCHHHHHHHHhc
Q 044772 25 CVTVRDGAVGKTCLLISYTG 44 (159)
Q Consensus 25 i~vvG~~~~GKSsli~~l~~ 44 (159)
|+++|++|||||||+..+..
T Consensus 2 ii~~G~pgsGKSt~a~~l~~ 21 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAK 21 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 68999999999999999873
No 372
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=97.48 E-value=0.0001 Score=52.08 Aligned_cols=23 Identities=13% Similarity=0.238 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcC
Q 044772 23 IKCVTVRDGAVGKTCLLISYTGN 45 (159)
Q Consensus 23 ~ki~vvG~~~~GKSsli~~l~~~ 45 (159)
.||+|+|+||+||||+..+|...
T Consensus 1 ~riiilG~pGaGK~T~A~~La~~ 23 (178)
T COG0563 1 MRILILGPPGAGKSTLAKKLAKK 23 (178)
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 37999999999999999999765
No 373
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=97.47 E-value=0.00051 Score=45.56 Aligned_cols=24 Identities=17% Similarity=0.099 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCC
Q 044772 23 IKCVTVRDGAVGKTCLLISYTGNT 46 (159)
Q Consensus 23 ~ki~vvG~~~~GKSsli~~l~~~~ 46 (159)
.-+++.|++|+|||+|++.+...-
T Consensus 20 ~~v~i~G~~G~GKT~l~~~i~~~~ 43 (151)
T cd00009 20 KNLLLYGPPGTGKTTLARAIANEL 43 (151)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHh
Confidence 458999999999999999998654
No 374
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.46 E-value=0.00023 Score=58.05 Aligned_cols=24 Identities=17% Similarity=0.036 Sum_probs=20.2
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhc
Q 044772 21 KFIKCVTVRDGAVGKTCLLISYTG 44 (159)
Q Consensus 21 ~~~ki~vvG~~~~GKSsli~~l~~ 44 (159)
..-.++|+|++|+||||++.+|..
T Consensus 349 ~G~vIaLVGPtGvGKTTtaakLAa 372 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTIAKLAQ 372 (559)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 346789999999999999988764
No 375
>PRK00098 GTPase RsgA; Reviewed
Probab=97.45 E-value=0.00023 Score=54.29 Aligned_cols=49 Identities=16% Similarity=0.221 Sum_probs=38.1
Q ss_pred ccCCcEEEEEEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCcccccC
Q 044772 91 YRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKD 142 (159)
Q Consensus 91 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~ 142 (159)
..++|.+++|+|+.++..+..... .|+..+.. .++|+++|+||+|+.+.
T Consensus 78 aaniD~vllV~d~~~p~~~~~~id-r~L~~~~~--~~ip~iIVlNK~DL~~~ 126 (298)
T PRK00098 78 AANVDQAVLVFAAKEPDFSTDLLD-RFLVLAEA--NGIKPIIVLNKIDLLDD 126 (298)
T ss_pred eecCCEEEEEEECCCCCCCHHHHH-HHHHHHHH--CCCCEEEEEEhHHcCCC
Confidence 589999999999988866555433 77776653 47899999999999643
No 376
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=97.45 E-value=0.00011 Score=53.24 Aligned_cols=23 Identities=26% Similarity=0.333 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 044772 24 KCVTVRDGAVGKTCLLISYTGNT 46 (159)
Q Consensus 24 ki~vvG~~~~GKSsli~~l~~~~ 46 (159)
.++++|++|||||||++++-+-+
T Consensus 30 vv~iiGpSGSGKSTlLRclN~LE 52 (240)
T COG1126 30 VVVIIGPSGSGKSTLLRCLNGLE 52 (240)
T ss_pred EEEEECCCCCCHHHHHHHHHCCc
Confidence 58999999999999999886544
No 377
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=97.41 E-value=0.00018 Score=41.82 Aligned_cols=20 Identities=20% Similarity=0.212 Sum_probs=17.9
Q ss_pred EEEEEcCCCCCHHHHHHHHh
Q 044772 24 KCVTVRDGAVGKTCLLISYT 43 (159)
Q Consensus 24 ki~vvG~~~~GKSsli~~l~ 43 (159)
-.+|.|++|+|||||+..+.
T Consensus 25 ~tli~G~nGsGKSTllDAi~ 44 (62)
T PF13555_consen 25 VTLITGPNGSGKSTLLDAIQ 44 (62)
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 48899999999999998775
No 378
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=97.41 E-value=0.00023 Score=49.05 Aligned_cols=51 Identities=18% Similarity=0.111 Sum_probs=34.3
Q ss_pred cccCCcEEEEEEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCcccccCc
Q 044772 90 SYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKDR 143 (159)
Q Consensus 90 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~r 143 (159)
.+.++|.+++|.|+.++..-... .+...+.....+.|+++|.||+|+....
T Consensus 5 ~l~~aD~il~VvD~~~p~~~~~~---~i~~~l~~~~~~~p~ilVlNKiDl~~~~ 55 (157)
T cd01858 5 VIDSSDVVIQVLDARDPMGTRCK---HVEEYLKKEKPHKHLIFVLNKCDLVPTW 55 (157)
T ss_pred hhhhCCEEEEEEECCCCccccCH---HHHHHHHhccCCCCEEEEEEchhcCCHH
Confidence 46789999999999886432111 3333333333458999999999996443
No 379
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.35 E-value=0.00017 Score=53.19 Aligned_cols=22 Identities=23% Similarity=0.277 Sum_probs=19.2
Q ss_pred EEEEcCCCCCHHHHHHHHhcCC
Q 044772 25 CVTVRDGAVGKTCLLISYTGNT 46 (159)
Q Consensus 25 i~vvG~~~~GKSsli~~l~~~~ 46 (159)
++++|++|||||||++-+.+-.
T Consensus 32 vsilGpSGcGKSTLLriiAGL~ 53 (248)
T COG1116 32 VAILGPSGCGKSTLLRLIAGLE 53 (248)
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 8999999999999998876544
No 380
>PRK14738 gmk guanylate kinase; Provisional
Probab=97.35 E-value=0.00026 Score=51.19 Aligned_cols=27 Identities=22% Similarity=0.244 Sum_probs=22.4
Q ss_pred cceeeEEEEEcCCCCCHHHHHHHHhcC
Q 044772 19 ATKFIKCVTVRDGAVGKTCLLISYTGN 45 (159)
Q Consensus 19 ~~~~~ki~vvG~~~~GKSsli~~l~~~ 45 (159)
+.+..-|+|+|++|+|||||++.|...
T Consensus 10 ~~~~~~ivi~GpsG~GK~tl~~~L~~~ 36 (206)
T PRK14738 10 PAKPLLVVISGPSGVGKDAVLARMRER 36 (206)
T ss_pred CCCCeEEEEECcCCCCHHHHHHHHHhc
Confidence 345567889999999999999999743
No 381
>COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.32 E-value=0.00027 Score=62.36 Aligned_cols=113 Identities=25% Similarity=0.169 Sum_probs=60.2
Q ss_pred EEEEcCCCCCHHHHHHHHhcCCCCCC----cccceeeeeEEEEEECCeEEEEEEEeCCCcccc--------ccccccc--
Q 044772 25 CVTVRDGAVGKTCLLISYTGNTFPTD----YVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDY--------NRLRPLS-- 90 (159)
Q Consensus 25 i~vvG~~~~GKSsli~~l~~~~~~~~----~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~--------~~~~~~~-- 90 (159)
.+|||++|+||||++..- +..|.-. .....+.. +..+. ..-.-+-.++||.|.... ...|..+
T Consensus 128 y~viG~pgsGKTtal~~s-gl~Fpl~~~~~~~~~~~~g-T~~cd-wwf~deaVlIDtaGry~~q~s~~~~~~~~W~~fL~ 204 (1188)
T COG3523 128 YMVIGPPGSGKTTALLNS-GLQFPLAEQMGALGLAGPG-TRNCD-WWFTDEAVLIDTAGRYITQDSADEVDRAEWLGFLG 204 (1188)
T ss_pred eEEecCCCCCcchHHhcc-cccCcchhhhccccccCCC-CcccC-cccccceEEEcCCcceecccCcchhhHHHHHHHHH
Confidence 689999999999997532 2333211 01111111 11111 011123678898884221 2234333
Q ss_pred -------ccCCcEEEEEEeCCChhhHHhhhhh----hH---HHHHhhhC-CCCCEEEEeeCcccc
Q 044772 91 -------YRGADVFILAFSLISRPSYENISKK----KW---VPELRHYA-PSVPIVLVGTKLDLR 140 (159)
Q Consensus 91 -------~~~~~~~i~v~d~~~~~s~~~~~~~----~~---~~~i~~~~-~~~piilv~nK~Dl~ 140 (159)
.+-.++||+..|+.+.-+-...... .+ ++++.... -..|+.|++||.|+.
T Consensus 205 lLkk~R~~~piNGiiltlsv~~L~~~~~~~~~~~~~~LR~RL~El~~tL~~~~PVYl~lTk~Dll 269 (1188)
T COG3523 205 LLKKYRRRRPLNGIILTLSVSDLLTADPAEREALARTLRARLQELRETLHARLPVYLVLTKADLL 269 (1188)
T ss_pred HHHHhccCCCCceEEEEEEHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhccCCceEEEEeccccc
Confidence 2458899999998643222111100 11 33444333 489999999999985
No 382
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=97.32 E-value=0.00018 Score=52.56 Aligned_cols=21 Identities=29% Similarity=0.275 Sum_probs=18.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 044772 24 KCVTVRDGAVGKTCLLISYTG 44 (159)
Q Consensus 24 ki~vvG~~~~GKSsli~~l~~ 44 (159)
-++++|++|||||||++-+-+
T Consensus 33 ~vaI~GpSGSGKSTLLniig~ 53 (226)
T COG1136 33 FVAIVGPSGSGKSTLLNLLGG 53 (226)
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 389999999999999997754
No 383
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=97.32 E-value=0.00041 Score=52.69 Aligned_cols=29 Identities=17% Similarity=0.244 Sum_probs=23.9
Q ss_pred CcceeeEEEEEcCCCCCHHHHHHHHhcCC
Q 044772 18 TATKFIKCVTVRDGAVGKTCLLISYTGNT 46 (159)
Q Consensus 18 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~ 46 (159)
...+...++++|++|.|||+++++|....
T Consensus 57 ~~~Rmp~lLivG~snnGKT~Ii~rF~~~h 85 (302)
T PF05621_consen 57 KRHRMPNLLIVGDSNNGKTMIIERFRRLH 85 (302)
T ss_pred cccCCCceEEecCCCCcHHHHHHHHHHHC
Confidence 33455679999999999999999998644
No 384
>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily. It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.
Probab=97.29 E-value=0.00069 Score=45.82 Aligned_cols=106 Identities=13% Similarity=0.040 Sum_probs=60.9
Q ss_pred EEcCCCCCHHHHHHHHhcCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCh
Q 044772 27 TVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISR 106 (159)
Q Consensus 27 vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~ 106 (159)
.-|.+|+|||++...+...-.... ..+.-...- .......+.+.++|+++.. .......+..+|.++++.+.+ .
T Consensus 5 ~~~kgg~gkt~~~~~~a~~~~~~~-~~~~~vd~D--~~~~~~~yd~VIiD~p~~~--~~~~~~~l~~aD~vviv~~~~-~ 78 (139)
T cd02038 5 TSGKGGVGKTNISANLALALAKLG-KRVLLLDAD--LGLANLDYDYIIIDTGAGI--SDNVLDFFLAADEVIVVTTPE-P 78 (139)
T ss_pred EcCCCCCcHHHHHHHHHHHHHHCC-CcEEEEECC--CCCCCCCCCEEEEECCCCC--CHHHHHHHHhCCeEEEEcCCC-h
Confidence 346889999999765542211000 000000000 0001112678999998742 223346788899999998876 4
Q ss_pred hhHHhhhhhhHHHHHhhhCCCCCEEEEeeCcccc
Q 044772 107 PSYENISKKKWVPELRHYAPSVPIVLVGTKLDLR 140 (159)
Q Consensus 107 ~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~ 140 (159)
.++.... ..++.+.......++.+|.|+++-.
T Consensus 79 ~s~~~~~--~~l~~l~~~~~~~~~~lVvN~~~~~ 110 (139)
T cd02038 79 TSITDAY--ALIKKLAKQLRVLNFRVVVNRAESP 110 (139)
T ss_pred hHHHHHH--HHHHHHHHhcCCCCEEEEEeCCCCH
Confidence 4555544 4455554444566788999999754
No 385
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=97.28 E-value=0.00025 Score=47.47 Aligned_cols=23 Identities=26% Similarity=0.287 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 044772 24 KCVTVRDGAVGKTCLLISYTGNT 46 (159)
Q Consensus 24 ki~vvG~~~~GKSsli~~l~~~~ 46 (159)
.++|+|++|+|||||++.+.+..
T Consensus 13 ~~~i~G~nGsGKStLl~~l~g~~ 35 (137)
T PF00005_consen 13 IVAIVGPNGSGKSTLLKALAGLL 35 (137)
T ss_dssp EEEEEESTTSSHHHHHHHHTTSS
T ss_pred EEEEEccCCCccccceeeecccc
Confidence 58999999999999999887543
No 386
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=97.28 E-value=0.00018 Score=49.90 Aligned_cols=22 Identities=23% Similarity=0.326 Sum_probs=17.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 044772 24 KCVTVRDGAVGKTCLLISYTGN 45 (159)
Q Consensus 24 ki~vvG~~~~GKSsli~~l~~~ 45 (159)
||+|+|.+++|||||++.|...
T Consensus 1 rI~i~G~~stGKTTL~~~L~~~ 22 (163)
T PF13521_consen 1 RIVITGGPSTGKTTLIEALAAR 22 (163)
T ss_dssp -EEEE--TTSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHc
Confidence 7999999999999999999755
No 387
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.26 E-value=0.0003 Score=46.21 Aligned_cols=26 Identities=23% Similarity=0.133 Sum_probs=21.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCC
Q 044772 23 IKCVTVRDGAVGKTCLLISYTGNTFP 48 (159)
Q Consensus 23 ~ki~vvG~~~~GKSsli~~l~~~~~~ 48 (159)
-.++++|++|+|||+++..+...-..
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~~ 28 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELGP 28 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccCC
Confidence 46899999999999999999865543
No 388
>PRK06217 hypothetical protein; Validated
Probab=97.25 E-value=0.00027 Score=49.97 Aligned_cols=23 Identities=13% Similarity=0.130 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcC
Q 044772 23 IKCVTVRDGAVGKTCLLISYTGN 45 (159)
Q Consensus 23 ~ki~vvG~~~~GKSsli~~l~~~ 45 (159)
.+|+|+|.+|||||||..+|...
T Consensus 2 ~~I~i~G~~GsGKSTla~~L~~~ 24 (183)
T PRK06217 2 MRIHITGASGSGTTTLGAALAER 24 (183)
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999988743
No 389
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=97.24 E-value=0.00021 Score=49.06 Aligned_cols=52 Identities=17% Similarity=0.086 Sum_probs=35.3
Q ss_pred ccccccccCCcEEEEEEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCccccc
Q 044772 85 RLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRK 141 (159)
Q Consensus 85 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~ 141 (159)
.++++.++++|.+++|+|+.++...... .+...+.. .+.|+++|+||+|+..
T Consensus 4 ~~~~~i~~~aD~vl~V~D~~~~~~~~~~---~l~~~~~~--~~~p~iiv~NK~Dl~~ 55 (156)
T cd01859 4 RLVRRIIKESDVVLEVLDARDPELTRSR---KLERYVLE--LGKKLLIVLNKADLVP 55 (156)
T ss_pred HHHHHHHhhCCEEEEEeeCCCCcccCCH---HHHHHHHh--CCCcEEEEEEhHHhCC
Confidence 3456777889999999999876433221 22222211 3689999999999854
No 390
>PRK14737 gmk guanylate kinase; Provisional
Probab=97.24 E-value=0.00032 Score=49.95 Aligned_cols=23 Identities=9% Similarity=0.082 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcC
Q 044772 23 IKCVTVRDGAVGKTCLLISYTGN 45 (159)
Q Consensus 23 ~ki~vvG~~~~GKSsli~~l~~~ 45 (159)
.=|+|+|++|||||||+++|+..
T Consensus 5 ~~ivl~GpsG~GK~tl~~~l~~~ 27 (186)
T PRK14737 5 KLFIISSVAGGGKSTIIQALLEE 27 (186)
T ss_pred eEEEEECCCCCCHHHHHHHHHhc
Confidence 34889999999999999999864
No 391
>KOG2485 consensus Conserved ATP/GTP binding protein [General function prediction only]
Probab=97.23 E-value=0.00031 Score=53.35 Aligned_cols=60 Identities=20% Similarity=0.159 Sum_probs=36.7
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccce----eeee--EEEEEECCeEEEEEEEeCCCc
Q 044772 20 TKFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTV----FDNF--SANVMVDGRTVNLGLWDTAGQ 80 (159)
Q Consensus 20 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~----~~~~--~~~~~~~~~~~~~~i~D~~g~ 80 (159)
...++++|+|-||+|||||+|.+............. +.+. ...+.+..+. .+.+.|+||.
T Consensus 141 ~~~~~vmVvGvPNVGKSsLINa~r~~~Lrk~k~a~vG~~pGVT~~V~~~iri~~rp-~vy~iDTPGi 206 (335)
T KOG2485|consen 141 NSEYNVMVVGVPNVGKSSLINALRNVHLRKKKAARVGAEPGVTRRVSERIRISHRP-PVYLIDTPGI 206 (335)
T ss_pred CCceeEEEEcCCCCChHHHHHHHHHHHhhhccceeccCCCCceeeehhheEeccCC-ceEEecCCCc
Confidence 467899999999999999999887554322211111 1111 1123333333 2778999983
No 392
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=97.23 E-value=0.00029 Score=49.98 Aligned_cols=22 Identities=18% Similarity=0.154 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 044772 24 KCVTVRDGAVGKTCLLISYTGN 45 (159)
Q Consensus 24 ki~vvG~~~~GKSsli~~l~~~ 45 (159)
.++|+|++|+|||||++.|...
T Consensus 4 ~i~l~G~sGsGKsTl~~~l~~~ 25 (186)
T PRK10078 4 LIWLMGPSGSGKDSLLAALRQR 25 (186)
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 5899999999999999999654
No 393
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=97.21 E-value=0.00036 Score=41.41 Aligned_cols=21 Identities=10% Similarity=0.118 Sum_probs=18.5
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 044772 25 CVTVRDGAVGKTCLLISYTGN 45 (159)
Q Consensus 25 i~vvG~~~~GKSsli~~l~~~ 45 (159)
|++.|++|+|||++.+.|...
T Consensus 2 i~i~G~~gsGKst~~~~l~~~ 22 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQ 22 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 678999999999999988753
No 394
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=97.21 E-value=0.00032 Score=47.42 Aligned_cols=21 Identities=29% Similarity=0.286 Sum_probs=18.9
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 044772 25 CVTVRDGAVGKTCLLISYTGN 45 (159)
Q Consensus 25 i~vvG~~~~GKSsli~~l~~~ 45 (159)
|+++|++|+|||||++.|...
T Consensus 2 i~i~GpsGsGKstl~~~L~~~ 22 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEE 22 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhc
Confidence 689999999999999999854
No 395
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.20 E-value=0.00034 Score=46.19 Aligned_cols=21 Identities=19% Similarity=0.099 Sum_probs=18.9
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 044772 25 CVTVRDGAVGKTCLLISYTGN 45 (159)
Q Consensus 25 i~vvG~~~~GKSsli~~l~~~ 45 (159)
|++.|++|+|||++++.+...
T Consensus 1 ill~G~~G~GKT~l~~~la~~ 21 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQY 21 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHH
T ss_pred CEEECcCCCCeeHHHHHHHhh
Confidence 689999999999999998754
No 396
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=97.19 E-value=0.00033 Score=49.22 Aligned_cols=22 Identities=23% Similarity=0.129 Sum_probs=19.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 044772 24 KCVTVRDGAVGKTCLLISYTGN 45 (159)
Q Consensus 24 ki~vvG~~~~GKSsli~~l~~~ 45 (159)
-++|+|++|||||||++.|...
T Consensus 3 ~~~i~G~sGsGKttl~~~l~~~ 24 (179)
T TIGR02322 3 LIYVVGPSGAGKDTLLDYARAR 24 (179)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999988653
No 397
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=97.18 E-value=0.00046 Score=49.77 Aligned_cols=26 Identities=19% Similarity=-0.036 Sum_probs=21.7
Q ss_pred cceeeEEEEEcCCCCCHHHHHHHHhc
Q 044772 19 ATKFIKCVTVRDGAVGKTCLLISYTG 44 (159)
Q Consensus 19 ~~~~~ki~vvG~~~~GKSsli~~l~~ 44 (159)
+....-|.|+|++|+|||||++.+.+
T Consensus 3 ~~~g~vi~I~G~sGsGKSTl~~~l~~ 28 (207)
T TIGR00235 3 KPKGIIIGIGGGSGSGKTTVARKIYE 28 (207)
T ss_pred CCCeEEEEEECCCCCCHHHHHHHHHH
Confidence 34456789999999999999998874
No 398
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=97.16 E-value=0.00042 Score=48.54 Aligned_cols=52 Identities=21% Similarity=0.239 Sum_probs=30.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeeeEEEEEECCeEEEEEEEeC
Q 044772 24 KCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDT 77 (159)
Q Consensus 24 ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~ 77 (159)
+|++.|++|+|||||+++++..--... .+..+. +...+.-++.++-+.+.|+
T Consensus 1 ~i~iTG~pG~GKTTll~k~i~~l~~~~-~~v~Gf-~t~evr~~g~r~GF~iv~l 52 (168)
T PF03266_consen 1 HIFITGPPGVGKTTLLKKVIEELKKKG-LPVGGF-YTEEVRENGRRIGFDIVDL 52 (168)
T ss_dssp EEEEES-TTSSHHHHHHHHHHHHHHTC-GGEEEE-EEEEEETTSSEEEEEEEET
T ss_pred CEEEECcCCCCHHHHHHHHHHHhhccC-CccceE-EeecccCCCceEEEEEEEC
Confidence 689999999999999999874321111 111121 2223334555666666666
No 399
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=97.16 E-value=0.00042 Score=49.01 Aligned_cols=24 Identities=21% Similarity=0.266 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCC
Q 044772 23 IKCVTVRDGAVGKTCLLISYTGNT 46 (159)
Q Consensus 23 ~ki~vvG~~~~GKSsli~~l~~~~ 46 (159)
.=+++.||+|+|||||+++|+...
T Consensus 5 ~l~vlsgPSG~GKsTl~k~L~~~~ 28 (191)
T COG0194 5 LLIVLSGPSGVGKSTLVKALLEDD 28 (191)
T ss_pred eEEEEECCCCCCHHHHHHHHHhhc
Confidence 447888999999999999998655
No 400
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=97.15 E-value=0.00038 Score=48.84 Aligned_cols=22 Identities=23% Similarity=0.238 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 044772 24 KCVTVRDGAVGKTCLLISYTGN 45 (159)
Q Consensus 24 ki~vvG~~~~GKSsli~~l~~~ 45 (159)
-|+|+|++|+|||||++.|...
T Consensus 3 ii~l~G~~GsGKsTl~~~L~~~ 24 (180)
T TIGR03263 3 LIVISGPSGVGKSTLVKALLEE 24 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHcc
Confidence 4899999999999999999864
No 401
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=97.15 E-value=0.00036 Score=52.00 Aligned_cols=21 Identities=24% Similarity=0.279 Sum_probs=18.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 044772 24 KCVTVRDGAVGKTCLLISYTG 44 (159)
Q Consensus 24 ki~vvG~~~~GKSsli~~l~~ 44 (159)
=++++|++|||||||++.+.+
T Consensus 30 i~~iiGpNG~GKSTLLk~l~g 50 (258)
T COG1120 30 ITGILGPNGSGKSTLLKCLAG 50 (258)
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 378999999999999998875
No 402
>KOG1143 consensus Predicted translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=97.14 E-value=0.0014 Score=51.32 Aligned_cols=118 Identities=16% Similarity=0.153 Sum_probs=67.6
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCC------------------ccc-----ceeeee-EEEEEE----------
Q 044772 20 TKFIKCVTVRDGAVGKTCLLISYTGNTFPTD------------------YVP-----TVFDNF-SANVMV---------- 65 (159)
Q Consensus 20 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~------------------~~~-----t~~~~~-~~~~~~---------- 65 (159)
--.++++++|...+|||+|+--|..++.... ... ..+... .+.+.+
T Consensus 165 fievRvAVlGg~D~GKSTLlGVLTQgeLDnG~GrARln~FRh~HEiqsGrTSsis~evlGFd~~g~vVNY~~~~taEEi~ 244 (591)
T KOG1143|consen 165 FIEVRVAVLGGCDVGKSTLLGVLTQGELDNGNGRARLNIFRHPHEIQSGRTSSISNEVLGFDNRGKVVNYAQNMTAEEIV 244 (591)
T ss_pred ceEEEEEEecCcccCcceeeeeeecccccCCCCeeeeehhcchhhhccCcccccchhcccccccccccchhhcccHHHHH
Confidence 3567999999999999999865554433210 000 011100 001111
Q ss_pred CCeEEEEEEEeCCCcccccccccccccC--CcEEEEEEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCcccccC
Q 044772 66 DGRTVNLGLWDTAGQEDYNRLRPLSYRG--ADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKD 142 (159)
Q Consensus 66 ~~~~~~~~i~D~~g~~~~~~~~~~~~~~--~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~ 142 (159)
+.....+.+.|+.|+.+|..-..+.+.. .|.++++++.+..-....- +.+..+.. -++|+.++.+|+|+.+.
T Consensus 245 e~SSKlvTfiDLAGh~kY~~TTi~gLtgY~Ph~A~LvVsA~~Gi~~tTr---EHLgl~~A--L~iPfFvlvtK~Dl~~~ 318 (591)
T KOG1143|consen 245 EKSSKLVTFIDLAGHAKYQKTTIHGLTGYTPHFACLVVSADRGITWTTR---EHLGLIAA--LNIPFFVLVTKMDLVDR 318 (591)
T ss_pred hhhcceEEEeecccchhhheeeeeecccCCCceEEEEEEcCCCCccccH---HHHHHHHH--hCCCeEEEEEeeccccc
Confidence 1122347799999998876654444432 5667777777643222211 22222222 26999999999999765
No 403
>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=97.13 E-value=0.002 Score=51.07 Aligned_cols=111 Identities=19% Similarity=0.045 Sum_probs=69.4
Q ss_pred EEEEcCCCCCHHHHHHHHhcCCCCC----Ccccce-eeeeEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEE
Q 044772 25 CVTVRDGAVGKTCLLISYTGNTFPT----DYVPTV-FDNFSANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL 99 (159)
Q Consensus 25 i~vvG~~~~GKSsli~~l~~~~~~~----~~~~t~-~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~ 99 (159)
|...|+---|||||+..+.+..... ..+.+. .-.|.+ .+-....+.+.|.||++++-...-..+...|.+++
T Consensus 3 i~t~GhidHgkT~L~~altg~~~d~l~EekKRG~TiDlg~~y---~~~~d~~~~fIDvpgh~~~i~~miag~~~~d~alL 79 (447)
T COG3276 3 IGTAGHIDHGKTTLLKALTGGVTDRLPEEKKRGITIDLGFYY---RKLEDGVMGFIDVPGHPDFISNLLAGLGGIDYALL 79 (447)
T ss_pred EEEeeeeeccchhhhhhhcccccccchhhhhcCceEeeeeEe---ccCCCCceEEeeCCCcHHHHHHHHhhhcCCceEEE
Confidence 5566788899999999988655321 112222 222221 12222368999999999988777777788999999
Q ss_pred EEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCcccccC
Q 044772 100 AFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKD 142 (159)
Q Consensus 100 v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~ 142 (159)
|++.++.-..+.......+..+ .-...++|.||+|..+.
T Consensus 80 vV~~deGl~~qtgEhL~iLdll----gi~~giivltk~D~~d~ 118 (447)
T COG3276 80 VVAADEGLMAQTGEHLLILDLL----GIKNGIIVLTKADRVDE 118 (447)
T ss_pred EEeCccCcchhhHHHHHHHHhc----CCCceEEEEeccccccH
Confidence 9999643332222210112211 23457999999999853
No 404
>PRK14530 adenylate kinase; Provisional
Probab=97.12 E-value=0.00045 Score=50.14 Aligned_cols=21 Identities=10% Similarity=0.053 Sum_probs=19.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHh
Q 044772 23 IKCVTVRDGAVGKTCLLISYT 43 (159)
Q Consensus 23 ~ki~vvG~~~~GKSsli~~l~ 43 (159)
.+|+|+|+|||||||+.++|.
T Consensus 4 ~~I~i~G~pGsGKsT~~~~La 24 (215)
T PRK14530 4 PRILLLGAPGAGKGTQSSNLA 24 (215)
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 479999999999999999886
No 405
>PRK03839 putative kinase; Provisional
Probab=97.11 E-value=0.00045 Score=48.61 Aligned_cols=22 Identities=18% Similarity=0.086 Sum_probs=19.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 044772 24 KCVTVRDGAVGKTCLLISYTGN 45 (159)
Q Consensus 24 ki~vvG~~~~GKSsli~~l~~~ 45 (159)
+|+++|.+|+||||+..+|...
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~ 23 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEK 23 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6999999999999999888643
No 406
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=97.11 E-value=0.00046 Score=44.66 Aligned_cols=21 Identities=24% Similarity=0.404 Sum_probs=18.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHh
Q 044772 23 IKCVTVRDGAVGKTCLLISYT 43 (159)
Q Consensus 23 ~ki~vvG~~~~GKSsli~~l~ 43 (159)
-.++++|++|+|||||+..+.
T Consensus 16 e~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 16 VGVLITGDSGIGKTELALELI 36 (107)
T ss_pred EEEEEEcCCCCCHHHHHHHhh
Confidence 358999999999999999876
No 407
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=97.11 E-value=0.00041 Score=53.67 Aligned_cols=22 Identities=27% Similarity=0.327 Sum_probs=19.5
Q ss_pred EEEEcCCCCCHHHHHHHHhcCC
Q 044772 25 CVTVRDGAVGKTCLLISYTGNT 46 (159)
Q Consensus 25 i~vvG~~~~GKSsli~~l~~~~ 46 (159)
++++||+|||||||++.+.+=.
T Consensus 32 ~vllGPSGcGKSTlLr~IAGLe 53 (338)
T COG3839 32 VVLLGPSGCGKSTLLRMIAGLE 53 (338)
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 8899999999999999887644
No 408
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=97.11 E-value=0.00046 Score=50.98 Aligned_cols=26 Identities=23% Similarity=0.218 Sum_probs=22.4
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcC
Q 044772 20 TKFIKCVTVRDGAVGKTCLLISYTGN 45 (159)
Q Consensus 20 ~~~~ki~vvG~~~~GKSsli~~l~~~ 45 (159)
...++++|+|++|||||+|+..++..
T Consensus 11 ~~~fr~viIG~sGSGKT~li~~lL~~ 36 (241)
T PF04665_consen 11 KDPFRMVIIGKSGSGKTTLIKSLLYY 36 (241)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHh
Confidence 45689999999999999999888754
No 409
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=97.10 E-value=0.00046 Score=45.35 Aligned_cols=21 Identities=14% Similarity=-0.018 Sum_probs=18.6
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 044772 25 CVTVRDGAVGKTCLLISYTGN 45 (159)
Q Consensus 25 i~vvG~~~~GKSsli~~l~~~ 45 (159)
|+|.|.+||||||+++.|...
T Consensus 1 I~i~G~~GsGKtTia~~L~~~ 21 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAER 21 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 689999999999999988754
No 410
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=97.08 E-value=0.00055 Score=48.33 Aligned_cols=22 Identities=18% Similarity=0.080 Sum_probs=19.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhc
Q 044772 23 IKCVTVRDGAVGKTCLLISYTG 44 (159)
Q Consensus 23 ~ki~vvG~~~~GKSsli~~l~~ 44 (159)
-.++++|++|+|||||++.+..
T Consensus 22 ~~~~l~G~nG~GKSTLl~~il~ 43 (176)
T cd03238 22 VLVVVTGVSGSGKSTLVNEGLY 43 (176)
T ss_pred CEEEEECCCCCCHHHHHHHHhh
Confidence 4689999999999999998763
No 411
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.08 E-value=0.0011 Score=48.05 Aligned_cols=20 Identities=20% Similarity=0.267 Sum_probs=17.5
Q ss_pred EEEEEcCCCCCHHHHHHHHh
Q 044772 24 KCVTVRDGAVGKTCLLISYT 43 (159)
Q Consensus 24 ki~vvG~~~~GKSsli~~l~ 43 (159)
=.+++||+|||||||+..|-
T Consensus 35 VTAlIGPSGcGKST~LR~lN 54 (253)
T COG1117 35 VTALIGPSGCGKSTLLRCLN 54 (253)
T ss_pred eEEEECCCCcCHHHHHHHHH
Confidence 46899999999999998774
No 412
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=97.08 E-value=0.00055 Score=49.24 Aligned_cols=24 Identities=25% Similarity=0.163 Sum_probs=21.1
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcC
Q 044772 22 FIKCVTVRDGAVGKTCLLISYTGN 45 (159)
Q Consensus 22 ~~ki~vvG~~~~GKSsli~~l~~~ 45 (159)
+++|.++|++|+|||||++++.+.
T Consensus 1 ~~~i~i~G~~GsGKTTll~~l~~~ 24 (199)
T TIGR00101 1 PLKIGVAGPVGSGKTALIEALTRA 24 (199)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHh
Confidence 368999999999999999988754
No 413
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=97.06 E-value=0.00065 Score=47.80 Aligned_cols=25 Identities=20% Similarity=0.048 Sum_probs=21.0
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcC
Q 044772 21 KFIKCVTVRDGAVGKTCLLISYTGN 45 (159)
Q Consensus 21 ~~~ki~vvG~~~~GKSsli~~l~~~ 45 (159)
+..-+.|+|.+|+|||||+.+++..
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~~ 29 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIPA 29 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHHH
Confidence 3446899999999999999999854
No 414
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=97.06 E-value=0.00052 Score=48.36 Aligned_cols=21 Identities=14% Similarity=-0.054 Sum_probs=19.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHh
Q 044772 23 IKCVTVRDGAVGKTCLLISYT 43 (159)
Q Consensus 23 ~ki~vvG~~~~GKSsli~~l~ 43 (159)
.-|+++|++||||||+++++.
T Consensus 4 ~ii~i~G~~GsGKsTl~~~l~ 24 (188)
T TIGR01360 4 KIIFIVGGPGSGKGTQCEKIV 24 (188)
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 468899999999999999887
No 415
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=97.06 E-value=0.00058 Score=46.40 Aligned_cols=22 Identities=23% Similarity=0.200 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 044772 24 KCVTVRDGAVGKTCLLISYTGN 45 (159)
Q Consensus 24 ki~vvG~~~~GKSsli~~l~~~ 45 (159)
.|+|+|+.|+|||||+..|++.
T Consensus 2 vv~VvG~~~sGKTTl~~~Li~~ 23 (140)
T PF03205_consen 2 VVQVVGPKNSGKTTLIRKLINE 23 (140)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5889999999999999998754
No 416
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=97.06 E-value=0.00059 Score=45.84 Aligned_cols=21 Identities=24% Similarity=0.224 Sum_probs=18.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 044772 24 KCVTVRDGAVGKTCLLISYTG 44 (159)
Q Consensus 24 ki~vvG~~~~GKSsli~~l~~ 44 (159)
.|+++|++|+|||+|++.+..
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~ 21 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAA 21 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 389999999999999998764
No 417
>PLN02200 adenylate kinase family protein
Probab=97.04 E-value=0.00087 Score=49.44 Aligned_cols=26 Identities=8% Similarity=-0.065 Sum_probs=21.5
Q ss_pred cceeeEEEEEcCCCCCHHHHHHHHhc
Q 044772 19 ATKFIKCVTVRDGAVGKTCLLISYTG 44 (159)
Q Consensus 19 ~~~~~ki~vvG~~~~GKSsli~~l~~ 44 (159)
......|+|+|+|||||||+..+|..
T Consensus 40 ~~~~~ii~I~G~PGSGKsT~a~~La~ 65 (234)
T PLN02200 40 EKTPFITFVLGGPGSGKGTQCEKIVE 65 (234)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 33456799999999999999988863
No 418
>PRK14531 adenylate kinase; Provisional
Probab=97.04 E-value=0.00063 Score=48.13 Aligned_cols=23 Identities=9% Similarity=-0.010 Sum_probs=20.0
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhc
Q 044772 22 FIKCVTVRDGAVGKTCLLISYTG 44 (159)
Q Consensus 22 ~~ki~vvG~~~~GKSsli~~l~~ 44 (159)
..+|+++|+||+||||+..+|..
T Consensus 2 ~~~i~i~G~pGsGKsT~~~~la~ 24 (183)
T PRK14531 2 KQRLLFLGPPGAGKGTQAARLCA 24 (183)
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 35899999999999999988853
No 419
>PRK13949 shikimate kinase; Provisional
Probab=97.02 E-value=0.00064 Score=47.62 Aligned_cols=21 Identities=24% Similarity=0.115 Sum_probs=18.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 044772 24 KCVTVRDGAVGKTCLLISYTG 44 (159)
Q Consensus 24 ki~vvG~~~~GKSsli~~l~~ 44 (159)
+|+|+|++|+||||+...|..
T Consensus 3 ~I~liG~~GsGKstl~~~La~ 23 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALAR 23 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 799999999999999987763
No 420
>PRK12288 GTPase RsgA; Reviewed
Probab=97.01 E-value=0.0015 Score=51.02 Aligned_cols=47 Identities=15% Similarity=0.241 Sum_probs=38.5
Q ss_pred ccCCcEEEEEEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCccccc
Q 044772 91 YRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRK 141 (159)
Q Consensus 91 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~ 141 (159)
..++|.+++|++.....++..+. .|+..+.. .++|++||+||+||..
T Consensus 118 aANvD~vlIV~s~~p~~s~~~Ld--r~L~~a~~--~~i~~VIVlNK~DL~~ 164 (347)
T PRK12288 118 AANIDQIVIVSAVLPELSLNIID--RYLVACET--LGIEPLIVLNKIDLLD 164 (347)
T ss_pred EEEccEEEEEEeCCCCCCHHHHH--HHHHHHHh--cCCCEEEEEECccCCC
Confidence 35699999999998888888888 88775542 4689999999999965
No 421
>KOG0465 consensus Mitochondrial elongation factor [Translation, ribosomal structure and biogenesis]
Probab=97.01 E-value=0.0012 Score=54.32 Aligned_cols=117 Identities=19% Similarity=0.100 Sum_probs=76.4
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCCC----CCc--ccce----------eeee-EEEEEECCeEEEEEEEeCCCccc
Q 044772 20 TKFIKCVTVRDGAVGKTCLLISYTGNTFP----TDY--VPTV----------FDNF-SANVMVDGRTVNLGLWDTAGQED 82 (159)
Q Consensus 20 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~----~~~--~~t~----------~~~~-~~~~~~~~~~~~~~i~D~~g~~~ 82 (159)
.+..+|=++-.-.+|||++-+|++.-.-. ..- ..+. +.+- +.-....++.+.+++.||||+-.
T Consensus 37 ~k~RNIgi~AhidsgKTT~tEr~Lyy~G~~~~i~ev~~~~a~md~m~~er~rgITiqSAAt~~~w~~~~iNiIDTPGHvD 116 (721)
T KOG0465|consen 37 NKIRNIGISAHIDAGKTTLTERMLYYTGRIKHIGEVRGGGATMDSMELERQRGITIQSAATYFTWRDYRINIIDTPGHVD 116 (721)
T ss_pred hhhcccceEEEEecCCceeeheeeeecceeeeccccccCceeeehHHHHHhcCceeeeceeeeeeccceeEEecCCCcee
Confidence 45567777778889999998887632211 110 0000 0000 11112233467899999999999
Q ss_pred ccccccccccCCcEEEEEEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCccccc
Q 044772 83 YNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRK 141 (159)
Q Consensus 83 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~ 141 (159)
|.-.....++-.|++|++++....-.-+... -|.+.-+. ++|.+...||.|.-.
T Consensus 117 FT~EVeRALrVlDGaVlvl~aV~GVqsQt~t--V~rQ~~ry---~vP~i~FiNKmDRmG 170 (721)
T KOG0465|consen 117 FTFEVERALRVLDGAVLVLDAVAGVESQTET--VWRQMKRY---NVPRICFINKMDRMG 170 (721)
T ss_pred EEEEehhhhhhccCeEEEEEcccceehhhHH--HHHHHHhc---CCCeEEEEehhhhcC
Confidence 9888888999999999999876543333333 56554333 689999999999754
No 422
>KOG1487 consensus GTP-binding protein DRG1 (ODN superfamily) [Signal transduction mechanisms]
Probab=97.01 E-value=0.0034 Score=46.85 Aligned_cols=92 Identities=20% Similarity=0.202 Sum_probs=58.1
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCCC-CCcccceeeeeEEEEEECCeEEEEEEEeCCCccc-cc------ccccccc
Q 044772 20 TKFIKCVTVRDGAVGKTCLLISYTGNTFP-TDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQED-YN------RLRPLSY 91 (159)
Q Consensus 20 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~-~~------~~~~~~~ 91 (159)
....+|=++|=|.+||||++..+.+.... ..|..|.-.+......+.+ -++++.|+||.-. .. .....-.
T Consensus 57 tg~a~vg~vgFPSvGksTl~~~l~g~~s~vasyefttl~~vpG~~~y~g--aKiqlldlpgiiegakdgkgrg~qviava 134 (358)
T KOG1487|consen 57 TGDARVGFVGFPSVGKSTLLSKLTGTFSEVAAYEFTTLTTVPGVIRYKG--AKIQLLDLPGIIEGAKDGKGRGKQVIAVA 134 (358)
T ss_pred ecceeeeEEecCccchhhhhhhhcCCCCccccccceeEEEecceEeccc--cceeeecCcchhcccccCCCCccEEEEEe
Confidence 34458999999999999999999865432 2333333222222223333 4589999998421 11 1223345
Q ss_pred cCCcEEEEEEeCCChhhHHhhh
Q 044772 92 RGADVFILAFSLISRPSYENIS 113 (159)
Q Consensus 92 ~~~~~~i~v~d~~~~~s~~~~~ 113 (159)
+.|+.+++|.|+-.|-+-..+.
T Consensus 135 rtcnli~~vld~~kp~~hk~~i 156 (358)
T KOG1487|consen 135 RTCNLIFIVLDVLKPLSHKKII 156 (358)
T ss_pred ecccEEEEEeeccCcccHHHHH
Confidence 6799999999998886655443
No 423
>PRK00300 gmk guanylate kinase; Provisional
Probab=97.00 E-value=0.00062 Score=48.81 Aligned_cols=23 Identities=17% Similarity=0.202 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcC
Q 044772 23 IKCVTVRDGAVGKTCLLISYTGN 45 (159)
Q Consensus 23 ~ki~vvG~~~~GKSsli~~l~~~ 45 (159)
.-|+|+|++|+|||||++.|.+.
T Consensus 6 ~~i~i~G~sGsGKstl~~~l~~~ 28 (205)
T PRK00300 6 LLIVLSGPSGAGKSTLVKALLER 28 (205)
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 45899999999999999988754
No 424
>PRK14532 adenylate kinase; Provisional
Probab=96.99 E-value=0.00069 Score=47.98 Aligned_cols=21 Identities=14% Similarity=0.045 Sum_probs=19.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 044772 24 KCVTVRDGAVGKTCLLISYTG 44 (159)
Q Consensus 24 ki~vvG~~~~GKSsli~~l~~ 44 (159)
+|+++|+|||||||+..+|..
T Consensus 2 ~i~~~G~pGsGKsT~a~~la~ 22 (188)
T PRK14532 2 NLILFGPPAAGKGTQAKRLVE 22 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 699999999999999998864
No 425
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=96.97 E-value=0.00075 Score=48.89 Aligned_cols=23 Identities=26% Similarity=0.212 Sum_probs=20.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 044772 24 KCVTVRDGAVGKTCLLISYTGNT 46 (159)
Q Consensus 24 ki~vvG~~~~GKSsli~~l~~~~ 46 (159)
.++++|++|+|||||++.+.+-.
T Consensus 32 ~~~l~G~nGsGKSTLl~~i~Gl~ 54 (218)
T cd03255 32 FVAIVGPSGSGKSTLLNILGGLD 54 (218)
T ss_pred EEEEEcCCCCCHHHHHHHHhCCc
Confidence 58999999999999999988653
No 426
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=96.97 E-value=0.00074 Score=47.70 Aligned_cols=24 Identities=21% Similarity=0.118 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCC
Q 044772 23 IKCVTVRDGAVGKTCLLISYTGNT 46 (159)
Q Consensus 23 ~ki~vvG~~~~GKSsli~~l~~~~ 46 (159)
-.++++|++|+|||||++.+.+-.
T Consensus 26 e~~~l~G~nGsGKSTLl~~l~Gl~ 49 (177)
T cd03222 26 EVIGIVGPNGTGKTTAVKILAGQL 49 (177)
T ss_pred CEEEEECCCCChHHHHHHHHHcCC
Confidence 368999999999999999887643
No 427
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=96.96 E-value=0.00077 Score=47.83 Aligned_cols=24 Identities=21% Similarity=0.189 Sum_probs=20.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCC
Q 044772 24 KCVTVRDGAVGKTCLLISYTGNTF 47 (159)
Q Consensus 24 ki~vvG~~~~GKSsli~~l~~~~~ 47 (159)
+++|+|++|+|||||+|-+.+=..
T Consensus 27 ~vAi~GpSGaGKSTLLnLIAGF~~ 50 (231)
T COG3840 27 IVAILGPSGAGKSTLLNLIAGFET 50 (231)
T ss_pred EEEEECCCCccHHHHHHHHHhccC
Confidence 689999999999999998765443
No 428
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=96.96 E-value=0.0056 Score=37.76 Aligned_cols=74 Identities=22% Similarity=0.183 Sum_probs=44.7
Q ss_pred EEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccc-ccccccCCcEEEEEEeC
Q 044772 25 CVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRL-RPLSYRGADVFILAFSL 103 (159)
Q Consensus 25 i~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~-~~~~~~~~~~~i~v~d~ 103 (159)
+++.|..|+|||++...+...-.... .+...++ .+.+.|+++....... .......++.++++.+.
T Consensus 2 ~~~~g~~G~Gktt~~~~l~~~l~~~g---------~~v~~~~----d~iivD~~~~~~~~~~~~~~~~~~~~~vi~v~~~ 68 (99)
T cd01983 2 IVVTGKGGVGKTTLAANLAAALAKRG---------KRVLLID----DYVLIDTPPGLGLLVLLCLLALLAADLVIIVTTP 68 (99)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCC---------CeEEEEC----CEEEEeCCCCccchhhhhhhhhhhCCEEEEecCC
Confidence 57889999999999887763321111 1112223 5889998875433221 13455678888888886
Q ss_pred CChhhHHhh
Q 044772 104 ISRPSYENI 112 (159)
Q Consensus 104 ~~~~s~~~~ 112 (159)
... +....
T Consensus 69 ~~~-~~~~~ 76 (99)
T cd01983 69 EAL-AVLGA 76 (99)
T ss_pred chh-hHHHH
Confidence 643 34433
No 429
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=96.94 E-value=0.00069 Score=47.98 Aligned_cols=22 Identities=9% Similarity=0.046 Sum_probs=19.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 044772 24 KCVTVRDGAVGKTCLLISYTGN 45 (159)
Q Consensus 24 ki~vvG~~~~GKSsli~~l~~~ 45 (159)
+|+|+|++|+||||+...|...
T Consensus 1 ~I~i~G~pGsGKst~a~~La~~ 22 (194)
T cd01428 1 RILLLGPPGSGKGTQAERLAKK 22 (194)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999988743
No 430
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=96.94 E-value=0.00071 Score=47.32 Aligned_cols=23 Identities=22% Similarity=0.192 Sum_probs=15.7
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHh
Q 044772 21 KFIKCVTVRDGAVGKTCLLISYT 43 (159)
Q Consensus 21 ~~~ki~vvG~~~~GKSsli~~l~ 43 (159)
....++|.|++|+|||+|++++.
T Consensus 23 ~~~~~ll~G~~G~GKT~ll~~~~ 45 (185)
T PF13191_consen 23 SPRNLLLTGESGSGKTSLLRALL 45 (185)
T ss_dssp ----EEE-B-TTSSHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHH
Confidence 34678999999999999999775
No 431
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=96.94 E-value=0.00084 Score=48.61 Aligned_cols=23 Identities=22% Similarity=0.226 Sum_probs=20.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 044772 24 KCVTVRDGAVGKTCLLISYTGNT 46 (159)
Q Consensus 24 ki~vvG~~~~GKSsli~~l~~~~ 46 (159)
.++++|++|+|||||++.+.+-.
T Consensus 31 ~~~i~G~nGsGKSTLl~~l~Gl~ 53 (216)
T TIGR00960 31 MVFLVGHSGAGKSTFLKLILGIE 53 (216)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999988643
No 432
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=96.94 E-value=0.00072 Score=52.61 Aligned_cols=22 Identities=27% Similarity=0.290 Sum_probs=19.2
Q ss_pred EEEEcCCCCCHHHHHHHHhcCC
Q 044772 25 CVTVRDGAVGKTCLLISYTGNT 46 (159)
Q Consensus 25 i~vvG~~~~GKSsli~~l~~~~ 46 (159)
++++||+||||||+++.+.+=.
T Consensus 34 ~~lLGPSGcGKTTlLR~IAGfe 55 (352)
T COG3842 34 VTLLGPSGCGKTTLLRMIAGFE 55 (352)
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 7899999999999998887544
No 433
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=96.93 E-value=0.0008 Score=47.33 Aligned_cols=20 Identities=10% Similarity=0.032 Sum_probs=18.0
Q ss_pred EEEEcCCCCCHHHHHHHHhc
Q 044772 25 CVTVRDGAVGKTCLLISYTG 44 (159)
Q Consensus 25 i~vvG~~~~GKSsli~~l~~ 44 (159)
|+++|+|||||||+..+|..
T Consensus 2 i~i~G~pGsGKst~a~~la~ 21 (183)
T TIGR01359 2 VFVLGGPGSGKGTQCAKIVE 21 (183)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 68999999999999998864
No 434
>PRK01889 GTPase RsgA; Reviewed
Probab=96.93 E-value=0.001 Score=52.06 Aligned_cols=24 Identities=21% Similarity=0.326 Sum_probs=21.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCC
Q 044772 23 IKCVTVRDGAVGKTCLLISYTGNT 46 (159)
Q Consensus 23 ~ki~vvG~~~~GKSsli~~l~~~~ 46 (159)
-+++++|.+|+|||||++.+.+..
T Consensus 196 ~~~~lvG~sgvGKStLin~L~g~~ 219 (356)
T PRK01889 196 KTVALLGSSGVGKSTLVNALLGEE 219 (356)
T ss_pred CEEEEECCCCccHHHHHHHHHHhc
Confidence 479999999999999999998654
No 435
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=96.93 E-value=0.00081 Score=47.73 Aligned_cols=22 Identities=23% Similarity=0.344 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 044772 24 KCVTVRDGAVGKTCLLISYTGN 45 (159)
Q Consensus 24 ki~vvG~~~~GKSsli~~l~~~ 45 (159)
.++++|++|+|||||++.+.+-
T Consensus 20 ~~~i~G~nGsGKSTLl~~i~G~ 41 (190)
T TIGR01166 20 VLALLGANGAGKSTLLLHLNGL 41 (190)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999988764
No 436
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=96.92 E-value=0.00081 Score=48.48 Aligned_cols=23 Identities=26% Similarity=0.242 Sum_probs=20.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 044772 24 KCVTVRDGAVGKTCLLISYTGNT 46 (159)
Q Consensus 24 ki~vvG~~~~GKSsli~~l~~~~ 46 (159)
.+.++|++|+|||||++.+.+-.
T Consensus 29 ~~~l~G~nGsGKSTLl~~l~G~~ 51 (211)
T cd03225 29 FVLIVGPNGSGKSTLLRLLNGLL 51 (211)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999888643
No 437
>PTZ00088 adenylate kinase 1; Provisional
Probab=96.92 E-value=0.00094 Score=49.12 Aligned_cols=24 Identities=21% Similarity=0.141 Sum_probs=20.7
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcC
Q 044772 22 FIKCVTVRDGAVGKTCLLISYTGN 45 (159)
Q Consensus 22 ~~ki~vvG~~~~GKSsli~~l~~~ 45 (159)
..+|+|+|+|||||||+..+|...
T Consensus 6 ~mrIvl~G~PGsGK~T~a~~La~~ 29 (229)
T PTZ00088 6 PLKIVLFGAPGVGKGTFAEILSKK 29 (229)
T ss_pred CceEEEECCCCCCHHHHHHHHHHH
Confidence 367999999999999999988643
No 438
>PRK02496 adk adenylate kinase; Provisional
Probab=96.92 E-value=0.00093 Score=47.18 Aligned_cols=22 Identities=9% Similarity=0.122 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHhc
Q 044772 23 IKCVTVRDGAVGKTCLLISYTG 44 (159)
Q Consensus 23 ~ki~vvG~~~~GKSsli~~l~~ 44 (159)
.+++|+|++|+||||+...|..
T Consensus 2 ~~i~i~G~pGsGKst~a~~la~ 23 (184)
T PRK02496 2 TRLIFLGPPGAGKGTQAVVLAE 23 (184)
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999988864
No 439
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=96.92 E-value=0.00091 Score=48.06 Aligned_cols=23 Identities=22% Similarity=0.153 Sum_probs=20.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 044772 24 KCVTVRDGAVGKTCLLISYTGNT 46 (159)
Q Consensus 24 ki~vvG~~~~GKSsli~~l~~~~ 46 (159)
.+.++|++|+|||||++.+.+-.
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~Gl~ 50 (205)
T cd03226 28 IIALTGKNGAGKTTLAKILAGLI 50 (205)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 68999999999999999887643
No 440
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.91 E-value=0.00091 Score=49.09 Aligned_cols=23 Identities=22% Similarity=0.192 Sum_probs=20.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 044772 24 KCVTVRDGAVGKTCLLISYTGNT 46 (159)
Q Consensus 24 ki~vvG~~~~GKSsli~~l~~~~ 46 (159)
.++++|++|+|||||++.+.+-.
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~G~~ 50 (235)
T cd03261 28 ILAIIGPSGSGKSTLLRLIVGLL 50 (235)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999998643
No 441
>PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.
Probab=96.91 E-value=0.028 Score=44.94 Aligned_cols=114 Identities=17% Similarity=0.182 Sum_probs=66.5
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCC---------------------Ccccceeeee----EEEEEE-CCeEEEEEEE
Q 044772 22 FIKCVTVRDGAVGKTCLLISYTGNTFPT---------------------DYVPTVFDNF----SANVMV-DGRTVNLGLW 75 (159)
Q Consensus 22 ~~ki~vvG~~~~GKSsli~~l~~~~~~~---------------------~~~~t~~~~~----~~~~~~-~~~~~~~~i~ 75 (159)
.+=|=||||-..|||||+.||...-..+ ...-|.+..| ...+.+ ++..+++.+.
T Consensus 17 dIYiGVVGPVRTGKSTFIKRFMel~VlPnI~d~~~reRa~DELPQS~aGktImTTEPKFiP~eAv~I~l~~~~~~kVRLi 96 (492)
T PF09547_consen 17 DIYIGVVGPVRTGKSTFIKRFMELLVLPNIEDEYERERARDELPQSGAGKTIMTTEPKFIPNEAVEITLDDGIKVKVRLI 96 (492)
T ss_pred ceEEEeecCcccCchhHHHHHHHHhcCCCCCCHHHHHHhhhcCCcCCCCCceeccCCcccCCcceEEEecCCceEEEEEE
Confidence 3557899999999999999996433221 1122234433 224444 4667889999
Q ss_pred eCCCcc--------c--ccc----ccccc---c--------------cCCcEEEEEEeCC----ChhhHHhhhhhhHHHH
Q 044772 76 DTAGQE--------D--YNR----LRPLS---Y--------------RGADVFILAFSLI----SRPSYENISKKKWVPE 120 (159)
Q Consensus 76 D~~g~~--------~--~~~----~~~~~---~--------------~~~~~~i~v~d~~----~~~s~~~~~~~~~~~~ 120 (159)
|+-|.- . -.+ -|-.+ | ...-++|+.-|.+ .++.+..+.+ +.+.+
T Consensus 97 DCVGy~V~gA~Gy~e~~~pRmV~TPWfd~eIPF~eAAeiGT~KVI~dHSTIGiVVTTDGSi~dipRe~Y~eAEe-rvI~E 175 (492)
T PF09547_consen 97 DCVGYMVEGALGYEEEEGPRMVKTPWFDEEIPFEEAAEIGTRKVITDHSTIGIVVTTDGSITDIPRENYVEAEE-RVIEE 175 (492)
T ss_pred eecceeecCccccccCCCceeecCCCCCCCCCHHHHHhhcccceeccCCceeEEEecCCCccCCChHHHHHHHH-HHHHH
Confidence 987621 1 011 12111 1 1233566665533 2455555554 66666
Q ss_pred HhhhCCCCCEEEEeeCcc
Q 044772 121 LRHYAPSVPIVLVGTKLD 138 (159)
Q Consensus 121 i~~~~~~~piilv~nK~D 138 (159)
++.. +.|++++.|-.+
T Consensus 176 Lk~i--gKPFvillNs~~ 191 (492)
T PF09547_consen 176 LKEI--GKPFVILLNSTK 191 (492)
T ss_pred HHHh--CCCEEEEEeCCC
Confidence 6654 489999999776
No 442
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=96.91 E-value=0.00095 Score=47.38 Aligned_cols=24 Identities=21% Similarity=0.090 Sum_probs=20.7
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcC
Q 044772 22 FIKCVTVRDGAVGKTCLLISYTGN 45 (159)
Q Consensus 22 ~~ki~vvG~~~~GKSsli~~l~~~ 45 (159)
.-.++++|++|+|||||++.+++-
T Consensus 25 g~~i~I~G~tGSGKTTll~aL~~~ 48 (186)
T cd01130 25 RKNILISGGTGSGKTTLLNALLAF 48 (186)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhh
Confidence 346999999999999999988754
No 443
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=96.91 E-value=0.00096 Score=48.14 Aligned_cols=26 Identities=19% Similarity=0.197 Sum_probs=22.7
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcC
Q 044772 20 TKFIKCVTVRDGAVGKTCLLISYTGN 45 (159)
Q Consensus 20 ~~~~ki~vvG~~~~GKSsli~~l~~~ 45 (159)
.....|.++|..|+|||||+++++..
T Consensus 20 ~~~~~i~~~G~~gsGKTTli~~l~~~ 45 (207)
T TIGR00073 20 HGLVVLNFMSSPGSGKTTLIEKLIDN 45 (207)
T ss_pred cCcEEEEEECCCCCCHHHHHHHHHHH
Confidence 35778999999999999999999754
No 444
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.90 E-value=0.00086 Score=48.38 Aligned_cols=22 Identities=18% Similarity=0.086 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 044772 24 KCVTVRDGAVGKTCLLISYTGN 45 (159)
Q Consensus 24 ki~vvG~~~~GKSsli~~l~~~ 45 (159)
.++++|++|+|||||++.+.+-
T Consensus 27 ~~~i~G~nGsGKSTLl~~l~Gl 48 (211)
T cd03264 27 MYGLLGPNGAGKTTLMRILATL 48 (211)
T ss_pred cEEEECCCCCCHHHHHHHHhCC
Confidence 7899999999999999988764
No 445
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=96.90 E-value=0.00087 Score=44.30 Aligned_cols=23 Identities=22% Similarity=0.143 Sum_probs=18.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 044772 24 KCVTVRDGAVGKTCLLISYTGNT 46 (159)
Q Consensus 24 ki~vvG~~~~GKSsli~~l~~~~ 46 (159)
-+++.|++|+|||++++++....
T Consensus 6 ~~~i~G~~G~GKT~~~~~~~~~~ 28 (131)
T PF13401_consen 6 ILVISGPPGSGKTTLIKRLARQL 28 (131)
T ss_dssp -EEEEE-TTSSHHHHHHHHHHHH
T ss_pred ccEEEcCCCCCHHHHHHHHHHHh
Confidence 47889999999999999998643
No 446
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=96.90 E-value=0.00096 Score=48.15 Aligned_cols=22 Identities=23% Similarity=0.154 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 044772 24 KCVTVRDGAVGKTCLLISYTGN 45 (159)
Q Consensus 24 ki~vvG~~~~GKSsli~~l~~~ 45 (159)
.++++|++|+|||||++.+.+-
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~G~ 50 (214)
T cd03292 29 FVFLVGPSGAGKSTLLKLIYKE 50 (214)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5889999999999999998864
No 447
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=96.90 E-value=0.00086 Score=49.22 Aligned_cols=20 Identities=30% Similarity=0.461 Sum_probs=18.4
Q ss_pred EEEEcCCCCCHHHHHHHHhc
Q 044772 25 CVTVRDGAVGKTCLLISYTG 44 (159)
Q Consensus 25 i~vvG~~~~GKSsli~~l~~ 44 (159)
|++||++|+|||||++.+-+
T Consensus 33 VaiIG~SGaGKSTLLR~lng 52 (258)
T COG3638 33 VAIIGPSGAGKSTLLRSLNG 52 (258)
T ss_pred EEEECCCCCcHHHHHHHHhc
Confidence 89999999999999988865
No 448
>PLN02459 probable adenylate kinase
Probab=96.89 E-value=0.0015 Score=48.95 Aligned_cols=24 Identities=17% Similarity=0.127 Sum_probs=20.7
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhc
Q 044772 21 KFIKCVTVRDGAVGKTCLLISYTG 44 (159)
Q Consensus 21 ~~~ki~vvG~~~~GKSsli~~l~~ 44 (159)
+..+++|+|+||+||+|+..+|..
T Consensus 28 ~~~~ii~~G~PGsGK~T~a~~la~ 51 (261)
T PLN02459 28 RNVNWVFLGCPGVGKGTYASRLSK 51 (261)
T ss_pred CccEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999888763
No 449
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=96.89 E-value=0.00076 Score=48.75 Aligned_cols=21 Identities=14% Similarity=0.058 Sum_probs=18.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 044772 24 KCVTVRDGAVGKTCLLISYTG 44 (159)
Q Consensus 24 ki~vvG~~~~GKSsli~~l~~ 44 (159)
||+|+|+|||||||+..+|..
T Consensus 1 rI~i~G~pGsGKsT~a~~La~ 21 (210)
T TIGR01351 1 RLVLLGPPGSGKGTQAKRIAE 21 (210)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998863
No 450
>PRK05480 uridine/cytidine kinase; Provisional
Probab=96.89 E-value=0.0012 Score=47.62 Aligned_cols=26 Identities=19% Similarity=0.068 Sum_probs=22.1
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcC
Q 044772 20 TKFIKCVTVRDGAVGKTCLLISYTGN 45 (159)
Q Consensus 20 ~~~~ki~vvG~~~~GKSsli~~l~~~ 45 (159)
.+...|.|.|++|||||||.+.|...
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~~ 29 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYEE 29 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 35678999999999999999888753
No 451
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=96.88 E-value=0.001 Score=48.08 Aligned_cols=22 Identities=27% Similarity=0.203 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 044772 24 KCVTVRDGAVGKTCLLISYTGN 45 (159)
Q Consensus 24 ki~vvG~~~~GKSsli~~l~~~ 45 (159)
.+.++|++|+|||||++.+.+-
T Consensus 30 ~~~l~G~nGsGKSTLl~~i~Gl 51 (214)
T TIGR02673 30 FLFLTGPSGAGKTTLLKLLYGA 51 (214)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999988764
No 452
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=96.88 E-value=0.0009 Score=48.04 Aligned_cols=22 Identities=14% Similarity=0.148 Sum_probs=19.1
Q ss_pred EEEEcCCCCCHHHHHHHHhcCC
Q 044772 25 CVTVRDGAVGKTCLLISYTGNT 46 (159)
Q Consensus 25 i~vvG~~~~GKSsli~~l~~~~ 46 (159)
|+|.|++|+||||+++.++...
T Consensus 4 ilI~GptGSGKTTll~~ll~~~ 25 (198)
T cd01131 4 VLVTGPTGSGKSTTLAAMIDYI 25 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 7899999999999999887543
No 453
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=96.87 E-value=0.001 Score=47.94 Aligned_cols=23 Identities=22% Similarity=0.164 Sum_probs=20.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 044772 24 KCVTVRDGAVGKTCLLISYTGNT 46 (159)
Q Consensus 24 ki~vvG~~~~GKSsli~~l~~~~ 46 (159)
.++++|++|+|||||++.+.+-.
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03262 28 VVVIIGPSGSGKSTLLRCINLLE 50 (213)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999998653
No 454
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=96.87 E-value=0.00094 Score=47.96 Aligned_cols=21 Identities=33% Similarity=0.377 Sum_probs=18.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 044772 24 KCVTVRDGAVGKTCLLISYTG 44 (159)
Q Consensus 24 ki~vvG~~~~GKSsli~~l~~ 44 (159)
-++++|++|||||||+|-+.+
T Consensus 33 ~vv~lGpSGcGKTTLLnl~AG 53 (259)
T COG4525 33 LVVVLGPSGCGKTTLLNLIAG 53 (259)
T ss_pred EEEEEcCCCccHHHHHHHHhc
Confidence 488999999999999997754
No 455
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=96.87 E-value=0.001 Score=48.99 Aligned_cols=22 Identities=18% Similarity=0.167 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 044772 24 KCVTVRDGAVGKTCLLISYTGN 45 (159)
Q Consensus 24 ki~vvG~~~~GKSsli~~l~~~ 45 (159)
.++++|++|+|||||++.+.+-
T Consensus 30 ~~~l~G~nGsGKSTLl~~l~Gl 51 (243)
T TIGR02315 30 FVAIIGPSGAGKSTLLRCINRL 51 (243)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999988764
No 456
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=96.87 E-value=0.00076 Score=46.61 Aligned_cols=21 Identities=14% Similarity=0.164 Sum_probs=18.3
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 044772 25 CVTVRDGAVGKTCLLISYTGN 45 (159)
Q Consensus 25 i~vvG~~~~GKSsli~~l~~~ 45 (159)
|+++|++|+||||+.+.|...
T Consensus 1 i~l~G~~GsGKSTla~~l~~~ 21 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHR 21 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHh
Confidence 578999999999999988754
No 457
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=96.87 E-value=0.0011 Score=47.61 Aligned_cols=23 Identities=17% Similarity=0.107 Sum_probs=20.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 044772 24 KCVTVRDGAVGKTCLLISYTGNT 46 (159)
Q Consensus 24 ki~vvG~~~~GKSsli~~l~~~~ 46 (159)
.+.++|++|+|||||++.+.+-.
T Consensus 26 ~~~i~G~nGsGKSTLl~~l~G~~ 48 (206)
T TIGR03608 26 MYAIIGESGSGKSTLLNIIGLLE 48 (206)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999998643
No 458
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=96.87 E-value=0.00093 Score=47.74 Aligned_cols=21 Identities=14% Similarity=0.044 Sum_probs=18.3
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 044772 25 CVTVRDGAVGKTCLLISYTGN 45 (159)
Q Consensus 25 i~vvG~~~~GKSsli~~l~~~ 45 (159)
|.|.|++|||||||.+.|...
T Consensus 2 igi~G~~GsGKSTl~~~l~~~ 22 (198)
T cd02023 2 IGIAGGSGSGKTTVAEEIIEQ 22 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 678999999999999988653
No 459
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=96.87 E-value=0.001 Score=48.30 Aligned_cols=23 Identities=26% Similarity=0.268 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 044772 24 KCVTVRDGAVGKTCLLISYTGNT 46 (159)
Q Consensus 24 ki~vvG~~~~GKSsli~~l~~~~ 46 (159)
.++++|++|+|||||++.+.+-.
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~Gl~ 50 (222)
T cd03224 28 IVALLGRNGAGKTTLLKTIMGLL 50 (222)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999887543
No 460
>KOG3929 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.86 E-value=0.00031 Score=52.22 Aligned_cols=89 Identities=13% Similarity=0.122 Sum_probs=54.2
Q ss_pred CcceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeeeE--EEEEECCeEEEEEEEeCCCccccccc-----cccc
Q 044772 18 TATKFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFS--ANVMVDGRTVNLGLWDTAGQEDYNRL-----RPLS 90 (159)
Q Consensus 18 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~--~~~~~~~~~~~~~i~D~~g~~~~~~~-----~~~~ 90 (159)
......-|++.|+.+. |++|++++...-. ...|+..-.|+ .....+...-..++|+++|....... ....
T Consensus 41 ~~~~E~~I~~~Gn~~~--tt~I~~~FdR~e~-~~~ptlaLEYtygRR~~g~~~kdiaN~WELGgg~~~~~LLsVPit~~~ 117 (363)
T KOG3929|consen 41 AEKFEFFIGSKGNGGK--TTIILRCFDRDEP-PKPPTLALEYTYGRRAKGHNPKDIANFWELGGGTSLLDLLSVPITGDT 117 (363)
T ss_pred hccceeEEEEecCCce--eEeehhhcCcccC-CCCCceeeeeehhhhccCCCchhHHHHHHhcCCccHHHHhcCcccccc
Confidence 3446677888887655 8888888755532 23455443343 33322323344889999987654433 3333
Q ss_pred ccCCcEEEEEEeCCChhhHH
Q 044772 91 YRGADVFILAFSLISRPSYE 110 (159)
Q Consensus 91 ~~~~~~~i~v~d~~~~~s~~ 110 (159)
+..+ .+|++.|+++++.|.
T Consensus 118 l~~~-slIL~LDls~p~~~W 136 (363)
T KOG3929|consen 118 LRTF-SLILVLDLSKPNDLW 136 (363)
T ss_pred hhhh-hheeeeecCChHHHH
Confidence 3333 678899999987764
No 461
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.86 E-value=0.0011 Score=47.93 Aligned_cols=22 Identities=27% Similarity=0.211 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 044772 24 KCVTVRDGAVGKTCLLISYTGN 45 (159)
Q Consensus 24 ki~vvG~~~~GKSsli~~l~~~ 45 (159)
.++++|++|+|||||++.+.+-
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~G~ 49 (213)
T cd03259 28 FLALLGPSGCGKTTLLRLIAGL 49 (213)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5889999999999999988764
No 462
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=96.86 E-value=0.00097 Score=48.38 Aligned_cols=23 Identities=26% Similarity=0.211 Sum_probs=20.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 044772 24 KCVTVRDGAVGKTCLLISYTGNT 46 (159)
Q Consensus 24 ki~vvG~~~~GKSsli~~l~~~~ 46 (159)
.++++|++|+|||||++.+.+-.
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~Gl~ 52 (220)
T cd03263 30 IFGLLGHNGAGKTTTLKMLTGEL 52 (220)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999988653
No 463
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.86 E-value=0.0011 Score=48.16 Aligned_cols=22 Identities=18% Similarity=0.030 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 044772 24 KCVTVRDGAVGKTCLLISYTGN 45 (159)
Q Consensus 24 ki~vvG~~~~GKSsli~~l~~~ 45 (159)
.++++|++|+|||||++.+.+-
T Consensus 28 ~~~i~G~nGsGKSTLl~~i~G~ 49 (220)
T cd03265 28 IFGLLGPNGAGKTTTIKMLTTL 49 (220)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5889999999999999988864
No 464
>PRK00625 shikimate kinase; Provisional
Probab=96.85 E-value=0.0011 Score=46.70 Aligned_cols=21 Identities=19% Similarity=0.083 Sum_probs=18.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 044772 24 KCVTVRDGAVGKTCLLISYTG 44 (159)
Q Consensus 24 ki~vvG~~~~GKSsli~~l~~ 44 (159)
+|+++|.+||||||+...|..
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~ 22 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAK 22 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 699999999999999988853
No 465
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.85 E-value=0.0011 Score=47.75 Aligned_cols=23 Identities=17% Similarity=0.065 Sum_probs=20.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 044772 24 KCVTVRDGAVGKTCLLISYTGNT 46 (159)
Q Consensus 24 ki~vvG~~~~GKSsli~~l~~~~ 46 (159)
.++++|++|+|||||++.+.+..
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~G~~ 50 (210)
T cd03269 28 IFGLLGPNGAGKTTTIRMILGII 50 (210)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 48899999999999999998653
No 466
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=96.85 E-value=0.0032 Score=47.78 Aligned_cols=24 Identities=13% Similarity=-0.017 Sum_probs=20.0
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhc
Q 044772 21 KFIKCVTVRDGAVGKTCLLISYTG 44 (159)
Q Consensus 21 ~~~ki~vvG~~~~GKSsli~~l~~ 44 (159)
+...|=+.|.||+|||||+..|..
T Consensus 50 ~a~viGITG~PGaGKSTli~~L~~ 73 (323)
T COG1703 50 NAHVIGITGVPGAGKSTLIEALGR 73 (323)
T ss_pred CCcEEEecCCCCCchHHHHHHHHH
Confidence 445788999999999999987753
No 467
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=96.85 E-value=0.0058 Score=38.86 Aligned_cols=82 Identities=15% Similarity=0.144 Sum_probs=47.9
Q ss_pred EEEEc-CCCCCHHHHHHHHhcCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEEEEeC
Q 044772 25 CVTVR-DGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSL 103 (159)
Q Consensus 25 i~vvG-~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~ 103 (159)
|.+.| ..|+|||++...+..--. ..-.+. --+..+. .+.+.++|+|+.... .....+..+|.++++.+.
T Consensus 2 i~~~~~kgG~Gkst~~~~la~~~~-~~~~~v------l~~d~d~-~~d~viiD~p~~~~~--~~~~~l~~ad~viv~~~~ 71 (104)
T cd02042 2 IAVANQKGGVGKTTTAVNLAAALA-RRGKRV------LLIDLDP-QYDYIIIDTPPSLGL--LTRNALAAADLVLIPVQP 71 (104)
T ss_pred EEEEeCCCCcCHHHHHHHHHHHHH-hCCCcE------EEEeCCC-CCCEEEEeCcCCCCH--HHHHHHHHCCEEEEeccC
Confidence 56677 568999999766542211 110011 1111222 267899999876322 223667789999999887
Q ss_pred CChhhHHhhhhhhHHH
Q 044772 104 ISRPSYENISKKKWVP 119 (159)
Q Consensus 104 ~~~~s~~~~~~~~~~~ 119 (159)
+ ..++..+. .+++
T Consensus 72 ~-~~s~~~~~--~~~~ 84 (104)
T cd02042 72 S-PLDLDGLE--KLLE 84 (104)
T ss_pred C-HHHHHHHH--HHHH
Confidence 5 45566555 4444
No 468
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=96.85 E-value=0.0011 Score=48.47 Aligned_cols=23 Identities=17% Similarity=0.114 Sum_probs=20.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 044772 24 KCVTVRDGAVGKTCLLISYTGNT 46 (159)
Q Consensus 24 ki~vvG~~~~GKSsli~~l~~~~ 46 (159)
.++++|++|+|||||++.+.+-.
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~Gl~ 50 (232)
T cd03218 28 IVGLLGPNGAGKTTTFYMIVGLV 50 (232)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999998653
No 469
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.84 E-value=0.001 Score=48.33 Aligned_cols=23 Identities=26% Similarity=0.235 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 044772 24 KCVTVRDGAVGKTCLLISYTGNT 46 (159)
Q Consensus 24 ki~vvG~~~~GKSsli~~l~~~~ 46 (159)
.+.++|++|+|||||++.+.+-.
T Consensus 32 ~~~i~G~nGsGKSTLl~~l~Gl~ 54 (220)
T cd03293 32 FVALVGPSGCGKSTLLRIIAGLE 54 (220)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58899999999999999887653
No 470
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=96.84 E-value=0.0011 Score=45.19 Aligned_cols=23 Identities=26% Similarity=0.303 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 044772 24 KCVTVRDGAVGKTCLLISYTGNT 46 (159)
Q Consensus 24 ki~vvG~~~~GKSsli~~l~~~~ 46 (159)
.++++|++|+|||||++.+.+..
T Consensus 28 ~~~i~G~nGsGKStLl~~l~G~~ 50 (144)
T cd03221 28 RIGLVGRNGAGKSTLLKLIAGEL 50 (144)
T ss_pred EEEEECCCCCCHHHHHHHHcCCC
Confidence 47899999999999999987654
No 471
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=96.84 E-value=0.0012 Score=47.15 Aligned_cols=23 Identities=22% Similarity=0.180 Sum_probs=20.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 044772 24 KCVTVRDGAVGKTCLLISYTGNT 46 (159)
Q Consensus 24 ki~vvG~~~~GKSsli~~l~~~~ 46 (159)
.++++|++|+|||||++.+.+-.
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~G~~ 50 (195)
T PRK13541 28 ITYIKGANGCGKSSLLRMIAGIM 50 (195)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 68999999999999999998754
No 472
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=96.83 E-value=0.0012 Score=47.97 Aligned_cols=23 Identities=26% Similarity=0.251 Sum_probs=20.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 044772 24 KCVTVRDGAVGKTCLLISYTGNT 46 (159)
Q Consensus 24 ki~vvG~~~~GKSsli~~l~~~~ 46 (159)
.++++|++|+|||||++.+.+..
T Consensus 33 ~~~i~G~nGsGKSTLl~~i~G~~ 55 (221)
T TIGR02211 33 IVAIVGSSGSGKSTLLHLLGGLD 55 (221)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58899999999999999988653
No 473
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=96.83 E-value=0.0011 Score=48.63 Aligned_cols=22 Identities=23% Similarity=0.178 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 044772 24 KCVTVRDGAVGKTCLLISYTGN 45 (159)
Q Consensus 24 ki~vvG~~~~GKSsli~~l~~~ 45 (159)
.++++|++|+|||||++.+.+-
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~Gl 49 (236)
T cd03219 28 IHGLIGPNGAGKTTLFNLISGF 49 (236)
T ss_pred EEEEECCCCCCHHHHHHHHcCC
Confidence 5899999999999999988764
No 474
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.82 E-value=0.0012 Score=48.34 Aligned_cols=23 Identities=17% Similarity=0.213 Sum_probs=20.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 044772 24 KCVTVRDGAVGKTCLLISYTGNT 46 (159)
Q Consensus 24 ki~vvG~~~~GKSsli~~l~~~~ 46 (159)
.++++|++|+|||||++.+.+-.
T Consensus 33 ~~~l~G~nGsGKSTLl~~l~G~~ 55 (233)
T cd03258 33 IFGIIGRSGAGKSTLIRCINGLE 55 (233)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999887653
No 475
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=96.81 E-value=0.0011 Score=48.05 Aligned_cols=24 Identities=21% Similarity=0.069 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCC
Q 044772 23 IKCVTVRDGAVGKTCLLISYTGNT 46 (159)
Q Consensus 23 ~ki~vvG~~~~GKSsli~~l~~~~ 46 (159)
-.+.++|++|+|||||++.+.+-.
T Consensus 14 e~~~l~G~NGsGKSTLlk~i~Gl~ 37 (213)
T PRK15177 14 EHIGILAAPGSGKTTLTRLLCGLD 37 (213)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCc
Confidence 358899999999999999888653
No 476
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=96.81 E-value=0.0012 Score=48.09 Aligned_cols=23 Identities=17% Similarity=0.144 Sum_probs=20.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 044772 24 KCVTVRDGAVGKTCLLISYTGNT 46 (159)
Q Consensus 24 ki~vvG~~~~GKSsli~~l~~~~ 46 (159)
.++++|++|+|||||++.+.+-.
T Consensus 28 ~~~i~G~nGsGKSTLl~~i~G~~ 50 (227)
T cd03260 28 ITALIGPSGCGKSTLLRLLNRLN 50 (227)
T ss_pred EEEEECCCCCCHHHHHHHHHhhc
Confidence 58999999999999999888654
No 477
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.81 E-value=0.0013 Score=46.23 Aligned_cols=22 Identities=23% Similarity=0.255 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 044772 24 KCVTVRDGAVGKTCLLISYTGN 45 (159)
Q Consensus 24 ki~vvG~~~~GKSsli~~l~~~ 45 (159)
.+.++|++|+|||||++.+.+.
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~G~ 49 (178)
T cd03229 28 IVALLGPSGSGKSTLLRCIAGL 49 (178)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999999864
No 478
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.80 E-value=0.0011 Score=48.67 Aligned_cols=23 Identities=22% Similarity=0.270 Sum_probs=20.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 044772 24 KCVTVRDGAVGKTCLLISYTGNT 46 (159)
Q Consensus 24 ki~vvG~~~~GKSsli~~l~~~~ 46 (159)
.++++|++|+|||||++.+.+-.
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~Gl~ 51 (241)
T cd03256 29 FVALIGPSGAGKSTLLRCLNGLV 51 (241)
T ss_pred EEEEECCCCCCHHHHHHHHhCCc
Confidence 58999999999999999998643
No 479
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=96.80 E-value=0.0013 Score=48.30 Aligned_cols=23 Identities=26% Similarity=0.248 Sum_probs=20.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 044772 24 KCVTVRDGAVGKTCLLISYTGNT 46 (159)
Q Consensus 24 ki~vvG~~~~GKSsli~~l~~~~ 46 (159)
.++++|++|+|||||++.+.+-.
T Consensus 37 ~~~l~G~nGsGKSTLl~~l~Gl~ 59 (233)
T PRK11629 37 MMAIVGSSGSGKSTLLHLLGGLD 59 (233)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999998653
No 480
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=96.80 E-value=0.0012 Score=47.70 Aligned_cols=23 Identities=26% Similarity=0.203 Sum_probs=20.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 044772 24 KCVTVRDGAVGKTCLLISYTGNT 46 (159)
Q Consensus 24 ki~vvG~~~~GKSsli~~l~~~~ 46 (159)
.++++|++|+|||||++.+.+..
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03301 28 FVVLLGPSGCGKTTTLRMIAGLE 50 (213)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58899999999999999888653
No 481
>PRK08233 hypothetical protein; Provisional
Probab=96.80 E-value=0.0014 Score=45.87 Aligned_cols=22 Identities=23% Similarity=0.018 Sum_probs=19.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHhc
Q 044772 23 IKCVTVRDGAVGKTCLLISYTG 44 (159)
Q Consensus 23 ~ki~vvG~~~~GKSsli~~l~~ 44 (159)
.-|+|.|.+|+|||||.++|..
T Consensus 4 ~iI~I~G~~GsGKtTla~~L~~ 25 (182)
T PRK08233 4 KIITIAAVSGGGKTTLTERLTH 25 (182)
T ss_pred eEEEEECCCCCCHHHHHHHHHh
Confidence 5577789999999999999874
No 482
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=96.80 E-value=0.0013 Score=46.24 Aligned_cols=23 Identities=13% Similarity=0.034 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcC
Q 044772 23 IKCVTVRDGAVGKTCLLISYTGN 45 (159)
Q Consensus 23 ~ki~vvG~~~~GKSsli~~l~~~ 45 (159)
.+|+++|++|+|||||...+...
T Consensus 5 ~~I~liG~~GaGKStl~~~La~~ 27 (172)
T PRK05057 5 RNIFLVGPMGAGKSTIGRQLAQQ 27 (172)
T ss_pred CEEEEECCCCcCHHHHHHHHHHH
Confidence 47999999999999999988743
No 483
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=96.80 E-value=0.0014 Score=45.55 Aligned_cols=23 Identities=17% Similarity=0.251 Sum_probs=20.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 044772 24 KCVTVRDGAVGKTCLLISYTGNT 46 (159)
Q Consensus 24 ki~vvG~~~~GKSsli~~l~~~~ 46 (159)
.++++|++|+|||||++.+.+..
T Consensus 28 ~~~l~G~nGsGKSTLl~~i~G~~ 50 (163)
T cd03216 28 VHALLGENGAGKSTLMKILSGLY 50 (163)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58899999999999999887654
No 484
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=96.79 E-value=0.0013 Score=46.94 Aligned_cols=23 Identities=26% Similarity=0.254 Sum_probs=20.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 044772 24 KCVTVRDGAVGKTCLLISYTGNT 46 (159)
Q Consensus 24 ki~vvG~~~~GKSsli~~l~~~~ 46 (159)
.++++|++|+|||||++.+.+..
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~G~~ 50 (198)
T TIGR01189 28 ALQVTGPNGIGKTTLLRILAGLL 50 (198)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999888643
No 485
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=96.79 E-value=0.0013 Score=47.95 Aligned_cols=23 Identities=22% Similarity=0.170 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 044772 24 KCVTVRDGAVGKTCLLISYTGNT 46 (159)
Q Consensus 24 ki~vvG~~~~GKSsli~~l~~~~ 46 (159)
.++++|++|+|||||++.+.+..
T Consensus 33 ~~~i~G~nGsGKSTLl~~l~G~~ 55 (228)
T cd03257 33 TLGLVGESGSGKSTLARAILGLL 55 (228)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 69999999999999999888653
No 486
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=96.78 E-value=0.0012 Score=49.08 Aligned_cols=21 Identities=24% Similarity=0.335 Sum_probs=19.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 044772 24 KCVTVRDGAVGKTCLLISYTG 44 (159)
Q Consensus 24 ki~vvG~~~~GKSsli~~l~~ 44 (159)
-+.++||+|+|||||+..+++
T Consensus 32 ~~~iiGPNGaGKSTLlK~iLG 52 (254)
T COG1121 32 ITALIGPNGAGKSTLLKAILG 52 (254)
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 478999999999999999987
No 487
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=96.78 E-value=0.0013 Score=47.57 Aligned_cols=23 Identities=22% Similarity=0.117 Sum_probs=20.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 044772 24 KCVTVRDGAVGKTCLLISYTGNT 46 (159)
Q Consensus 24 ki~vvG~~~~GKSsli~~l~~~~ 46 (159)
.++++|++|+|||||++.+.+-.
T Consensus 33 ~~~i~G~nGsGKSTLl~~l~Gl~ 55 (218)
T cd03266 33 VTGLLGPNGAGKTTTLRMLAGLL 55 (218)
T ss_pred EEEEECCCCCCHHHHHHHHhCCc
Confidence 58999999999999999887643
No 488
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=96.78 E-value=0.0013 Score=49.01 Aligned_cols=23 Identities=30% Similarity=0.278 Sum_probs=20.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 044772 24 KCVTVRDGAVGKTCLLISYTGNT 46 (159)
Q Consensus 24 ki~vvG~~~~GKSsli~~l~~~~ 46 (159)
.++|+|++|+|||||++.+.+-.
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~Gl~ 51 (255)
T PRK11248 29 LLVVLGPSGCGKTTLLNLIAGFV 51 (255)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999988653
No 489
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=96.78 E-value=0.0012 Score=47.42 Aligned_cols=23 Identities=17% Similarity=0.052 Sum_probs=20.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 044772 24 KCVTVRDGAVGKTCLLISYTGNT 46 (159)
Q Consensus 24 ki~vvG~~~~GKSsli~~l~~~~ 46 (159)
.++++|++|+|||||++.+.+..
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~Gl~ 50 (208)
T cd03268 28 IYGFLGPNGAGKTTTMKIILGLI 50 (208)
T ss_pred EEEEECCCCCCHHHHHHHHhCCc
Confidence 58899999999999999988643
No 490
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=96.78 E-value=0.0014 Score=45.59 Aligned_cols=23 Identities=17% Similarity=0.268 Sum_probs=20.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 044772 24 KCVTVRDGAVGKTCLLISYTGNT 46 (159)
Q Consensus 24 ki~vvG~~~~GKSsli~~l~~~~ 46 (159)
.++++|++|+|||||++.+.+..
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~G~~ 51 (166)
T cd03223 29 RLLITGPSGTGKSSLFRALAGLW 51 (166)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 68999999999999999988653
No 491
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=96.78 E-value=0.0013 Score=47.55 Aligned_cols=23 Identities=26% Similarity=0.226 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 044772 24 KCVTVRDGAVGKTCLLISYTGNT 46 (159)
Q Consensus 24 ki~vvG~~~~GKSsli~~l~~~~ 46 (159)
.+.++|++|+|||||++.+.+-.
T Consensus 27 ~~~l~G~nGsGKSTLl~~l~G~~ 49 (213)
T cd03235 27 FLAIVGPNGAGKSTLLKAILGLL 49 (213)
T ss_pred EEEEECCCCCCHHHHHHHHcCCC
Confidence 58999999999999999887643
No 492
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=96.77 E-value=0.0014 Score=46.93 Aligned_cols=23 Identities=26% Similarity=0.143 Sum_probs=20.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 044772 24 KCVTVRDGAVGKTCLLISYTGNT 46 (159)
Q Consensus 24 ki~vvG~~~~GKSsli~~l~~~~ 46 (159)
.++++|++|+|||||++.+.+..
T Consensus 29 ~~~l~G~nGsGKSTLl~~i~G~~ 51 (200)
T PRK13540 29 LLHLKGSNGAGKTTLLKLIAGLL 51 (200)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 68999999999999999887654
No 493
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=96.77 E-value=0.0015 Score=46.10 Aligned_cols=23 Identities=22% Similarity=0.237 Sum_probs=20.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 044772 24 KCVTVRDGAVGKTCLLISYTGNT 46 (159)
Q Consensus 24 ki~vvG~~~~GKSsli~~l~~~~ 46 (159)
.++++|++|+|||||++.+.+..
T Consensus 27 ~~~l~G~nGsGKStLl~~i~G~~ 49 (180)
T cd03214 27 IVGILGPNGAGKSTLLKTLAGLL 49 (180)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68899999999999999887643
No 494
>PF05729 NACHT: NACHT domain
Probab=96.77 E-value=0.0013 Score=45.04 Aligned_cols=21 Identities=19% Similarity=0.172 Sum_probs=18.5
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 044772 25 CVTVRDGAVGKTCLLISYTGN 45 (159)
Q Consensus 25 i~vvG~~~~GKSsli~~l~~~ 45 (159)
++|.|++|+|||+++.++...
T Consensus 3 l~I~G~~G~GKStll~~~~~~ 23 (166)
T PF05729_consen 3 LWISGEPGSGKSTLLRKLAQQ 23 (166)
T ss_pred EEEECCCCCChHHHHHHHHHH
Confidence 688999999999999988743
No 495
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=96.76 E-value=0.0014 Score=47.18 Aligned_cols=23 Identities=30% Similarity=0.232 Sum_probs=20.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 044772 24 KCVTVRDGAVGKTCLLISYTGNT 46 (159)
Q Consensus 24 ki~vvG~~~~GKSsli~~l~~~~ 46 (159)
.++++|++|+|||||++.+.+..
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~G~~ 52 (207)
T PRK13539 30 ALVLTGPNGSGKTTLLRLIAGLL 52 (207)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999988754
No 496
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=96.76 E-value=0.0013 Score=48.03 Aligned_cols=23 Identities=26% Similarity=0.287 Sum_probs=20.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 044772 24 KCVTVRDGAVGKTCLLISYTGNT 46 (159)
Q Consensus 24 ki~vvG~~~~GKSsli~~l~~~~ 46 (159)
-++++|++|+|||||++.+.+--
T Consensus 31 iv~llG~NGaGKTTlLkti~Gl~ 53 (237)
T COG0410 31 IVALLGRNGAGKTTLLKTIMGLV 53 (237)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 48999999999999999998644
No 497
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=96.75 E-value=0.0015 Score=46.16 Aligned_cols=23 Identities=17% Similarity=-0.083 Sum_probs=20.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 044772 24 KCVTVRDGAVGKTCLLISYTGNT 46 (159)
Q Consensus 24 ki~vvG~~~~GKSsli~~l~~~~ 46 (159)
.++++|++|+|||||++.+.+..
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~G~~ 50 (182)
T cd03215 28 IVGIAGLVGNGQTELAEALFGLR 50 (182)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999888654
No 498
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.75 E-value=0.0013 Score=48.42 Aligned_cols=23 Identities=26% Similarity=0.225 Sum_probs=20.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 044772 24 KCVTVRDGAVGKTCLLISYTGNT 46 (159)
Q Consensus 24 ki~vvG~~~~GKSsli~~l~~~~ 46 (159)
.++++|++|+|||||++.+.+-.
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~Gl~ 52 (239)
T cd03296 30 LVALLGPSGSGKTTLLRLIAGLE 52 (239)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 48899999999999999998653
No 499
>PRK10908 cell division protein FtsE; Provisional
Probab=96.75 E-value=0.0015 Score=47.56 Aligned_cols=23 Identities=22% Similarity=0.225 Sum_probs=20.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 044772 24 KCVTVRDGAVGKTCLLISYTGNT 46 (159)
Q Consensus 24 ki~vvG~~~~GKSsli~~l~~~~ 46 (159)
.++++|++|+|||||++.+.+..
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~G~~ 52 (222)
T PRK10908 30 MAFLTGHSGAGKSTLLKLICGIE 52 (222)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999988643
No 500
>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster. The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.
Probab=96.75 E-value=0.0052 Score=39.57 Aligned_cols=101 Identities=20% Similarity=0.105 Sum_probs=55.8
Q ss_pred EEEEc-CCCCCHHHHHHHHhcCCCCCCcccceeeeeEEEEEEC-CeEEEEEEEeCCCcccccccccccccCCcEEEEEEe
Q 044772 25 CVTVR-DGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVD-GRTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFS 102 (159)
Q Consensus 25 i~vvG-~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d 102 (159)
|+++| ..|+|||++...|...-.......+. -+..| .....+.+.|+++.... .....+..+|.++++.+
T Consensus 2 i~~~~~kgg~gkt~~~~~la~~~~~~~~~~~~------l~d~d~~~~~D~IIiDtpp~~~~--~~~~~l~~aD~vlvvv~ 73 (106)
T cd03111 2 IAFIGAKGGVGATTLAANLAVALAKEAGRRVL------LVDLDLQFGDDYVVVDLGRSLDE--VSLAALDQADRVFLVTQ 73 (106)
T ss_pred EEEECCCCCCcHHHHHHHHHHHHHhcCCCcEE------EEECCCCCCCCEEEEeCCCCcCH--HHHHHHHHcCeEEEEec
Confidence 34444 67899999876654221111000110 00111 00116899999875322 23356778999999887
Q ss_pred CCChhhHHhhhhhhHHHHHhhhC-C-CCCEEEEeeC
Q 044772 103 LISRPSYENISKKKWVPELRHYA-P-SVPIVLVGTK 136 (159)
Q Consensus 103 ~~~~~s~~~~~~~~~~~~i~~~~-~-~~piilv~nK 136 (159)
.+ ..+...+. .+++.+.+.. + ...+.+|.|+
T Consensus 74 ~~-~~s~~~~~--~~~~~l~~~~~~~~~~~~lVvNr 106 (106)
T cd03111 74 QD-LPSIRNAK--RLLELLRVLDYSLPAKIELVLNR 106 (106)
T ss_pred CC-hHHHHHHH--HHHHHHHHcCCCCcCceEEEecC
Confidence 66 44566555 5666555443 2 3567777775
Done!