Query 044772
Match_columns 159
No_of_seqs 103 out of 1165
Neff 9.5
Searched_HMMs 29240
Date Mon Mar 25 11:20:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044772.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/044772hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4dkx_A RAS-related protein RAB 100.0 8.4E-35 2.9E-39 210.5 9.6 135 19-155 10-146 (216)
2 3c5c_A RAS-like protein 12; GD 100.0 6.1E-31 2.1E-35 185.6 12.0 142 10-154 9-154 (187)
3 3q3j_B RHO-related GTP-binding 100.0 1.2E-30 4.1E-35 188.0 12.5 141 13-154 18-170 (214)
4 2gf9_A RAS-related protein RAB 100.0 4.7E-30 1.6E-34 181.0 14.4 151 1-153 1-153 (189)
5 2a5j_A RAS-related protein RAB 100.0 4.2E-30 1.4E-34 181.6 13.0 150 1-153 1-152 (191)
6 1gwn_A RHO-related GTP-binding 100.0 3.4E-30 1.2E-34 184.6 12.7 123 18-141 24-146 (205)
7 3reg_A RHO-like small GTPase; 100.0 7.3E-30 2.5E-34 180.6 13.9 138 14-152 15-154 (194)
8 2atx_A Small GTP binding prote 100.0 8.4E-30 2.9E-34 180.2 13.9 125 17-142 13-137 (194)
9 3t5g_A GTP-binding protein RHE 100.0 1.7E-29 5.9E-34 176.5 14.2 134 19-154 3-138 (181)
10 1m7b_A RND3/RHOE small GTP-bin 100.0 1.1E-29 3.6E-34 178.6 13.0 122 19-141 4-125 (184)
11 2hup_A RAS-related protein RAB 100.0 5E-30 1.7E-34 182.9 10.4 136 16-153 23-160 (201)
12 2q3h_A RAS homolog gene family 100.0 1.7E-29 6E-34 179.5 13.1 128 14-142 12-139 (201)
13 2gco_A H9, RHO-related GTP-bin 100.0 4.2E-29 1.4E-33 178.0 14.7 123 19-142 22-144 (201)
14 3kkq_A RAS-related protein M-R 100.0 1.4E-29 4.8E-34 177.3 11.5 134 18-153 14-149 (183)
15 2ew1_A RAS-related protein RAB 100.0 1.9E-29 6.6E-34 180.3 12.3 135 17-153 21-157 (201)
16 2a9k_A RAS-related protein RAL 100.0 8.7E-30 3E-34 178.3 10.1 135 16-152 12-148 (187)
17 3ihw_A Centg3; RAS, centaurin, 100.0 1.7E-29 5.7E-34 178.0 11.3 135 12-154 10-148 (184)
18 2j0v_A RAC-like GTP-binding pr 100.0 2.3E-29 7.7E-34 180.4 12.1 127 18-145 5-131 (212)
19 3oes_A GTPase rhebl1; small GT 100.0 2E-29 6.7E-34 179.6 11.3 138 14-153 16-155 (201)
20 3tw8_B RAS-related protein RAB 100.0 9.9E-29 3.4E-33 172.1 13.2 132 19-152 6-138 (181)
21 2bov_A RAla, RAS-related prote 100.0 4.3E-29 1.5E-33 177.7 11.1 134 18-153 10-145 (206)
22 1z06_A RAS-related protein RAB 100.0 6.7E-29 2.3E-33 175.0 11.7 134 18-153 16-153 (189)
23 1mh1_A RAC1; GTP-binding, GTPa 100.0 1.5E-28 5E-33 172.1 13.3 122 20-142 3-124 (186)
24 2j1l_A RHO-related GTP-binding 100.0 6.7E-29 2.3E-33 178.7 11.8 124 19-143 31-154 (214)
25 2fg5_A RAB-22B, RAS-related pr 100.0 6.4E-29 2.2E-33 175.7 11.4 142 10-153 11-154 (192)
26 1c1y_A RAS-related protein RAP 100.0 4.2E-29 1.4E-33 171.9 10.2 130 21-152 2-133 (167)
27 2fu5_C RAS-related protein RAB 100.0 3.9E-29 1.3E-33 175.0 10.0 133 20-154 6-140 (183)
28 2il1_A RAB12; G-protein, GDP, 100.0 2.3E-29 7.8E-34 178.2 8.8 135 17-153 21-157 (192)
29 1z0f_A RAB14, member RAS oncog 100.0 9.5E-29 3.3E-33 171.9 11.6 134 18-153 11-146 (179)
30 2oil_A CATX-8, RAS-related pro 100.0 9.9E-29 3.4E-33 174.5 11.9 136 16-153 19-156 (193)
31 1z2a_A RAS-related protein RAB 100.0 1.3E-28 4.3E-33 169.6 11.9 131 20-152 3-134 (168)
32 3dz8_A RAS-related protein RAB 100.0 4.4E-30 1.5E-34 181.5 4.6 143 9-153 10-154 (191)
33 2fn4_A P23, RAS-related protei 100.0 8.3E-29 2.8E-33 172.5 11.0 133 19-153 6-140 (181)
34 1z08_A RAS-related protein RAB 100.0 1.1E-28 3.7E-33 170.4 11.3 132 20-153 4-137 (170)
35 1u8z_A RAS-related protein RAL 100.0 6.5E-29 2.2E-33 170.8 9.9 131 21-153 3-135 (168)
36 3bwd_D RAC-like GTP-binding pr 100.0 3.1E-29 1.1E-33 175.1 8.3 127 18-145 4-130 (182)
37 1r2q_A RAS-related protein RAB 100.0 2E-28 6.8E-33 168.8 12.0 132 19-152 3-136 (170)
38 2efe_B Small GTP-binding prote 100.0 3.4E-28 1.2E-32 169.6 13.0 134 18-153 8-143 (181)
39 2fv8_A H6, RHO-related GTP-bin 100.0 4.2E-28 1.5E-32 173.5 13.7 124 18-142 21-144 (207)
40 3cpj_B GTP-binding protein YPT 100.0 2.4E-28 8.2E-33 176.7 12.5 135 18-154 9-145 (223)
41 2iwr_A Centaurin gamma 1; ANK 100.0 1E-28 3.5E-33 172.2 10.1 127 19-153 4-136 (178)
42 2bcg_Y Protein YP2, GTP-bindin 100.0 5E-28 1.7E-32 172.7 13.8 133 19-153 5-139 (206)
43 3con_A GTPase NRAS; structural 100.0 4.1E-28 1.4E-32 170.9 13.0 135 12-149 11-147 (190)
44 4gzl_A RAS-related C3 botulinu 100.0 1.9E-28 6.6E-33 175.1 11.5 126 18-144 26-151 (204)
45 2bme_A RAB4A, RAS-related prot 100.0 3.5E-28 1.2E-32 170.4 12.6 132 19-152 7-140 (186)
46 2g6b_A RAS-related protein RAB 100.0 6.1E-28 2.1E-32 168.2 13.5 134 18-153 6-142 (180)
47 1z0j_A RAB-22, RAS-related pro 100.0 4.4E-28 1.5E-32 167.2 12.7 132 20-153 4-137 (170)
48 3tkl_A RAS-related protein RAB 100.0 3.6E-28 1.2E-32 171.6 12.5 134 18-153 12-147 (196)
49 1kao_A RAP2A; GTP-binding prot 100.0 2.1E-28 7.1E-33 168.1 10.9 130 21-152 2-133 (167)
50 2o52_A RAS-related protein RAB 100.0 1.7E-28 5.7E-33 174.8 10.5 134 18-153 21-156 (200)
51 1zbd_A Rabphilin-3A; G protein 100.0 4.9E-28 1.7E-32 172.2 12.8 132 19-152 5-138 (203)
52 2g3y_A GTP-binding protein GEM 100.0 3E-28 1E-32 175.5 11.5 135 17-153 32-171 (211)
53 1ek0_A Protein (GTP-binding pr 100.0 5.5E-28 1.9E-32 166.6 12.2 129 21-151 2-135 (170)
54 1wms_A RAB-9, RAB9, RAS-relate 100.0 6.5E-28 2.2E-32 167.7 12.6 132 18-152 3-140 (177)
55 1x3s_A RAS-related protein RAB 100.0 5.6E-28 1.9E-32 170.4 12.2 129 18-149 11-142 (195)
56 2p5s_A RAS and EF-hand domain 100.0 1.4E-28 4.9E-33 174.8 9.2 136 15-152 21-164 (199)
57 2f7s_A C25KG, RAS-related prot 100.0 6.6E-29 2.3E-33 178.5 7.5 135 17-153 20-167 (217)
58 2atv_A RERG, RAS-like estrogen 100.0 2.3E-28 7.9E-33 173.3 10.1 133 18-153 24-158 (196)
59 3cbq_A GTP-binding protein REM 100.0 1.2E-28 4.1E-33 175.2 8.4 135 18-154 19-157 (195)
60 2y8e_A RAB-protein 6, GH09086P 100.0 4.2E-28 1.4E-32 168.6 10.9 132 19-152 11-144 (179)
61 3q72_A GTP-binding protein RAD 100.0 6.1E-28 2.1E-32 166.2 11.2 129 22-153 2-132 (166)
62 2erx_A GTP-binding protein DI- 100.0 3.3E-28 1.1E-32 168.0 9.9 129 21-151 2-133 (172)
63 2nzj_A GTP-binding protein REM 100.0 6.5E-28 2.2E-32 167.2 11.4 131 21-153 3-137 (175)
64 3bc1_A RAS-related protein RAB 100.0 8.7E-28 3E-32 168.9 11.9 132 19-152 8-152 (195)
65 2hxs_A RAB-26, RAS-related pro 100.0 1.6E-28 5.3E-33 171.0 7.8 132 20-153 4-141 (178)
66 3q85_A GTP-binding protein REM 100.0 6.8E-28 2.3E-32 166.4 10.5 130 22-153 2-135 (169)
67 1zd9_A ADP-ribosylation factor 100.0 8.7E-28 3E-32 169.4 11.1 137 1-142 1-139 (188)
68 1g16_A RAS-related protein SEC 99.9 9.3E-28 3.2E-32 165.6 10.8 128 21-151 2-131 (170)
69 2yc2_C IFT27, small RAB-relate 99.9 1.9E-28 6.4E-33 174.4 7.3 135 18-154 16-160 (208)
70 3l0i_B RAS-related protein RAB 99.9 2.3E-28 7.8E-33 173.8 7.4 134 19-154 30-165 (199)
71 4dsu_A GTPase KRAS, isoform 2B 99.9 1.8E-27 6.1E-32 166.9 11.9 126 20-148 2-129 (189)
72 1ky3_A GTP-binding protein YPT 99.9 1.4E-27 4.8E-32 166.3 10.2 131 19-151 5-143 (182)
73 3cph_A RAS-related protein SEC 99.9 4.3E-27 1.5E-31 168.2 12.4 131 17-150 15-147 (213)
74 1vg8_A RAS-related protein RAB 99.9 3.2E-27 1.1E-31 168.2 11.6 128 19-149 5-138 (207)
75 2ce2_X GTPase HRAS; signaling 99.9 3.8E-27 1.3E-31 161.4 10.3 124 22-148 3-128 (166)
76 3clv_A RAB5 protein, putative; 99.9 5.1E-27 1.7E-31 166.0 11.3 131 19-153 4-172 (208)
77 3gj0_A GTP-binding nuclear pro 99.9 3.8E-27 1.3E-31 170.0 10.7 125 17-143 10-135 (221)
78 2gf0_A GTP-binding protein DI- 99.9 2.2E-27 7.6E-32 167.9 9.1 128 19-149 5-135 (199)
79 4bas_A ADP-ribosylation factor 99.9 7.5E-27 2.5E-31 165.2 11.7 125 13-142 8-142 (199)
80 2h57_A ADP-ribosylation factor 99.9 1.7E-26 5.8E-31 162.8 12.7 136 1-142 1-141 (190)
81 2h17_A ADP-ribosylation factor 99.9 2.4E-26 8.3E-31 160.9 12.0 135 1-142 1-137 (181)
82 3llu_A RAS-related GTP-binding 99.9 2.1E-27 7.2E-32 168.5 6.4 141 8-153 6-162 (196)
83 2cjw_A GTP-binding protein GEM 99.9 2.2E-26 7.5E-31 163.1 11.5 132 20-153 4-140 (192)
84 4djt_A GTP-binding nuclear pro 99.9 5.2E-27 1.8E-31 168.7 7.4 133 18-152 7-142 (218)
85 3th5_A RAS-related C3 botulinu 99.9 2.4E-28 8.2E-33 174.2 0.0 135 19-154 27-173 (204)
86 2wkq_A NPH1-1, RAS-related C3 99.9 5.4E-26 1.9E-30 172.5 12.6 122 20-142 153-274 (332)
87 3t1o_A Gliding protein MGLA; G 99.9 6.7E-27 2.3E-31 164.9 6.0 123 17-142 9-150 (198)
88 1f6b_A SAR1; gtpases, N-termin 99.9 4.9E-26 1.7E-30 161.9 9.8 116 20-141 23-140 (198)
89 1m2o_B GTP-binding protein SAR 99.9 2.7E-25 9.4E-30 157.0 13.0 116 20-141 21-138 (190)
90 2zej_A Dardarin, leucine-rich 99.9 8.4E-27 2.9E-31 163.9 4.4 123 22-146 2-131 (184)
91 1r8s_A ADP-ribosylation factor 99.9 1E-25 3.5E-30 154.7 9.7 114 23-142 1-116 (164)
92 1ksh_A ARF-like protein 2; sma 99.9 1.1E-24 3.6E-29 152.8 14.0 119 20-144 16-136 (186)
93 2f9l_A RAB11B, member RAS onco 99.9 5.6E-25 1.9E-29 156.3 12.4 133 20-154 3-137 (199)
94 1zj6_A ADP-ribosylation factor 99.9 4.6E-25 1.6E-29 155.0 11.6 117 20-142 14-132 (187)
95 1upt_A ARL1, ADP-ribosylation 99.9 2E-24 6.9E-29 149.0 13.7 117 20-142 5-123 (171)
96 1oix_A RAS-related protein RAB 99.9 1E-24 3.4E-29 154.3 12.2 134 19-154 26-161 (191)
97 2b6h_A ADP-ribosylation factor 99.9 4.6E-25 1.6E-29 156.1 10.4 119 18-142 25-145 (192)
98 1fzq_A ADP-ribosylation factor 99.9 5.4E-25 1.8E-29 154.3 10.3 119 20-144 14-134 (181)
99 3r7w_B Gtpase2, GTP-binding pr 99.9 1.1E-25 3.8E-30 170.8 6.1 128 24-156 1-142 (331)
100 2fh5_B SR-beta, signal recogni 99.9 1.3E-24 4.5E-29 155.7 11.2 121 20-143 5-131 (214)
101 2x77_A ADP-ribosylation factor 99.9 1.1E-24 3.6E-29 153.3 10.5 117 20-142 20-138 (189)
102 1moz_A ARL1, ADP-ribosylation 99.9 1.4E-24 4.6E-29 151.7 10.2 117 20-142 16-134 (183)
103 3r7w_A Gtpase1, GTP-binding pr 99.9 5E-25 1.7E-29 166.8 7.8 130 21-152 2-146 (307)
104 3c5h_A Glucocorticoid receptor 99.9 4E-25 1.4E-29 163.2 3.1 129 15-145 12-216 (255)
105 3o47_A ADP-ribosylation factor 99.9 5.5E-24 1.9E-28 162.5 8.0 120 18-143 161-282 (329)
106 3lvq_E ARF-GAP with SH3 domain 99.9 4E-23 1.4E-27 165.3 12.9 118 19-142 319-438 (497)
107 2lkc_A Translation initiation 99.9 3.3E-22 1.1E-26 138.8 12.8 117 19-142 5-122 (178)
108 1nrj_B SR-beta, signal recogni 99.9 3.1E-23 1.1E-27 148.9 6.6 118 19-146 9-139 (218)
109 2ged_A SR-beta, signal recogni 99.9 4.2E-23 1.4E-27 145.4 6.1 117 20-146 46-175 (193)
110 2wji_A Ferrous iron transport 99.9 8.7E-22 3E-26 135.9 11.2 116 22-146 3-127 (165)
111 2qu8_A Putative nucleolar GTP- 99.9 6.9E-22 2.4E-26 143.2 10.4 126 20-147 27-162 (228)
112 3dpu_A RAB family protein; roc 99.9 1.6E-22 5.6E-27 163.2 7.3 127 18-149 37-172 (535)
113 2gj8_A MNME, tRNA modification 99.9 1.2E-21 4.1E-26 136.3 10.7 116 21-141 3-129 (172)
114 1svi_A GTP-binding protein YSX 99.9 6.5E-22 2.2E-26 139.4 8.0 121 18-146 19-153 (195)
115 2dyk_A GTP-binding protein; GT 99.9 3.5E-21 1.2E-25 131.4 10.8 113 23-142 2-123 (161)
116 2wjg_A FEOB, ferrous iron tran 99.8 1.8E-21 6.1E-26 136.4 6.4 117 21-146 6-131 (188)
117 1wf3_A GTP-binding protein; GT 99.8 3.8E-20 1.3E-24 139.7 11.5 120 20-144 5-134 (301)
118 3iev_A GTP-binding protein ERA 99.8 1.1E-20 3.7E-25 143.0 7.8 123 17-144 5-139 (308)
119 3a1s_A Iron(II) transport prot 99.8 4.3E-20 1.5E-24 136.6 10.7 119 20-147 3-130 (258)
120 3lxx_A GTPase IMAP family memb 99.8 5.3E-20 1.8E-24 134.3 10.9 126 15-146 22-164 (239)
121 2cxx_A Probable GTP-binding pr 99.8 2.9E-21 1E-25 135.3 3.6 115 23-143 2-138 (190)
122 3pqc_A Probable GTP-binding pr 99.8 2.7E-20 9.2E-25 130.7 7.8 116 17-141 18-147 (195)
123 3def_A T7I23.11 protein; chlor 99.8 6.9E-20 2.4E-24 135.6 10.3 122 20-145 34-169 (262)
124 3iby_A Ferrous iron transport 99.8 3.9E-20 1.3E-24 136.7 6.9 116 23-147 2-130 (256)
125 3b1v_A Ferrous iron uptake tra 99.8 6.1E-20 2.1E-24 136.7 7.4 116 21-146 2-126 (272)
126 3gee_A MNME, tRNA modification 99.8 2.9E-19 1E-23 142.2 11.1 119 21-145 232-361 (476)
127 4dhe_A Probable GTP-binding pr 99.8 3.2E-20 1.1E-24 133.4 5.0 122 18-144 25-161 (223)
128 3i8s_A Ferrous iron transport 99.8 1.2E-19 4.1E-24 135.3 7.8 117 21-146 2-131 (274)
129 1h65_A Chloroplast outer envel 99.8 2.8E-19 9.7E-24 132.8 9.1 120 21-144 38-171 (270)
130 3lxw_A GTPase IMAP family memb 99.8 3.4E-19 1.2E-23 130.9 8.8 120 17-142 16-154 (247)
131 4fid_A G protein alpha subunit 99.8 2E-19 6.9E-24 137.3 7.4 79 68-148 159-249 (340)
132 3k53_A Ferrous iron transport 99.8 4.3E-19 1.5E-23 131.8 8.6 119 21-147 2-129 (271)
133 2hjg_A GTP-binding protein ENG 99.8 1.1E-19 3.7E-24 143.5 5.2 120 20-146 173-305 (436)
134 2xtp_A GTPase IMAP family memb 99.8 1.4E-18 4.8E-23 128.1 10.7 120 18-142 18-154 (260)
135 3ohm_A Guanine nucleotide-bind 99.8 4.8E-19 1.6E-23 134.7 7.1 73 69-143 166-250 (327)
136 1mky_A Probable GTP-binding pr 99.8 2.9E-18 9.8E-23 135.4 10.3 112 23-141 2-124 (439)
137 4dcu_A GTP-binding protein ENG 99.8 2.9E-19 1E-23 141.7 4.5 124 19-149 192-328 (456)
138 1cip_A Protein (guanine nucleo 99.7 2E-18 6.7E-23 132.8 7.9 73 69-143 192-276 (353)
139 4dcu_A GTP-binding protein ENG 99.7 5.2E-19 1.8E-23 140.2 4.7 128 10-143 11-147 (456)
140 3qq5_A Small GTP-binding prote 99.7 2.3E-18 7.7E-23 135.2 8.0 120 18-145 30-158 (423)
141 2xtz_A Guanine nucleotide-bind 99.7 1.4E-18 4.7E-23 133.7 6.2 75 68-144 181-267 (354)
142 3geh_A MNME, tRNA modification 99.7 7.2E-18 2.5E-22 133.8 9.1 117 21-146 223-349 (462)
143 2hjg_A GTP-binding protein ENG 99.7 2.3E-18 8E-23 135.8 6.1 115 22-143 3-127 (436)
144 1xzp_A Probable tRNA modificat 99.7 5.8E-18 2E-22 134.9 6.8 112 22-142 243-365 (482)
145 1zcb_A G alpha I/13; GTP-bindi 99.7 2.2E-17 7.6E-22 127.3 9.1 73 69-143 200-284 (362)
146 2qag_A Septin-2, protein NEDD5 99.7 4.8E-18 1.7E-22 131.1 4.8 123 20-146 35-193 (361)
147 3izy_P Translation initiation 99.7 6.9E-19 2.4E-23 141.5 -0.3 116 21-142 3-119 (537)
148 3p26_A Elongation factor 1 alp 99.7 1.4E-17 4.9E-22 132.8 7.1 127 20-146 31-190 (483)
149 3t5d_A Septin-7; GTP-binding p 99.7 2.1E-17 7.2E-22 122.9 7.5 118 19-141 5-158 (274)
150 2e87_A Hypothetical protein PH 99.7 1.3E-16 4.3E-21 122.9 11.8 122 20-145 165-298 (357)
151 3sjy_A Translation initiation 99.7 4.6E-17 1.6E-21 127.2 9.1 123 18-143 4-145 (403)
152 1lnz_A SPO0B-associated GTP-bi 99.7 1.3E-17 4.5E-22 127.7 5.2 116 24-143 160-290 (342)
153 1mky_A Probable GTP-binding pr 99.7 8.9E-17 3.1E-21 126.9 9.8 118 21-145 179-310 (439)
154 2ywe_A GTP-binding protein LEP 99.7 7.8E-17 2.7E-21 131.1 9.4 119 20-143 4-141 (600)
155 1ega_A Protein (GTP-binding pr 99.7 1.4E-16 4.9E-21 120.1 9.7 114 20-141 6-130 (301)
156 3cb4_D GTP-binding protein LEP 99.7 4.3E-17 1.5E-21 132.8 7.3 118 21-143 3-139 (599)
157 1g7s_A Translation initiation 99.7 1.4E-16 4.8E-21 129.7 8.6 114 20-141 3-136 (594)
158 2qtf_A Protein HFLX, GTP-bindi 99.7 7.3E-16 2.5E-20 119.0 12.1 115 23-142 179-307 (364)
159 3j2k_7 ERF3, eukaryotic polype 99.7 4.7E-16 1.6E-20 122.8 10.8 120 18-140 13-168 (439)
160 3tr5_A RF-3, peptide chain rel 99.7 3.2E-17 1.1E-21 132.0 4.2 116 20-142 11-149 (528)
161 1jny_A EF-1-alpha, elongation 99.7 4.6E-17 1.6E-21 128.4 5.0 116 20-141 4-158 (435)
162 1zo1_I IF2, translation initia 99.7 4E-17 1.4E-21 130.3 4.6 115 20-141 2-117 (501)
163 1s0u_A EIF-2-gamma, translatio 99.7 1.7E-15 5.7E-20 118.6 13.3 117 20-143 6-151 (408)
164 2aka_B Dynamin-1; fusion prote 99.7 5.6E-16 1.9E-20 116.0 10.1 122 19-144 23-209 (299)
165 1wb1_A Translation elongation 99.6 3.5E-16 1.2E-20 124.8 9.0 113 18-141 15-139 (482)
166 1r5b_A Eukaryotic peptide chai 99.6 3.4E-16 1.2E-20 124.5 8.5 118 19-141 40-195 (467)
167 3izq_1 HBS1P, elongation facto 99.6 6E-16 2.1E-20 126.5 9.8 120 20-144 165-322 (611)
168 1zun_B Sulfate adenylate trans 99.6 9.8E-16 3.4E-20 120.8 10.7 118 20-141 22-171 (434)
169 1n0u_A EF-2, elongation factor 99.6 6.2E-16 2.1E-20 130.4 9.6 117 19-140 16-163 (842)
170 2c78_A Elongation factor TU-A; 99.6 1.1E-15 3.8E-20 119.4 10.3 117 19-141 8-142 (405)
171 2h5e_A Peptide chain release f 99.6 6.9E-16 2.4E-20 124.3 8.3 119 20-143 11-150 (529)
172 1kk1_A EIF2gamma; initiation o 99.6 5E-15 1.7E-19 115.9 12.4 118 19-143 7-153 (410)
173 3t34_A Dynamin-related protein 99.6 1.1E-15 3.8E-20 117.7 8.5 124 21-148 33-224 (360)
174 1dar_A EF-G, elongation factor 99.6 6.9E-16 2.4E-20 127.8 7.8 116 19-142 9-144 (691)
175 2qpt_A EH domain-containing pr 99.6 2.7E-16 9.3E-21 127.2 5.1 123 19-145 62-236 (550)
176 1d2e_A Elongation factor TU (E 99.6 1.3E-15 4.3E-20 118.9 8.7 116 21-141 2-133 (397)
177 1jwy_B Dynamin A GTPase domain 99.6 9.7E-16 3.3E-20 115.6 7.5 122 20-144 22-215 (315)
178 2j69_A Bacterial dynamin-like 99.6 1.6E-15 5.6E-20 125.6 9.3 120 20-143 67-246 (695)
179 1f60_A Elongation factor EEF1A 99.6 1.7E-15 6E-20 120.1 8.6 115 20-141 5-159 (458)
180 1pui_A ENGB, probable GTP-bind 99.6 1.6E-15 5.6E-20 107.8 7.5 115 19-141 23-151 (210)
181 2xex_A Elongation factor G; GT 99.6 6.3E-15 2.2E-19 122.1 11.1 116 19-142 7-142 (693)
182 2elf_A Protein translation elo 99.6 8.3E-16 2.8E-20 118.9 5.0 104 24-143 23-128 (370)
183 2rdo_7 EF-G, elongation factor 99.6 8.9E-15 3.1E-19 121.3 11.4 118 19-142 7-149 (704)
184 3mca_A HBS1, elongation factor 99.6 8.3E-16 2.8E-20 125.3 2.7 121 19-141 174-329 (592)
185 1azs_C GS-alpha; complex (lyas 99.6 1.8E-14 6.2E-19 112.2 9.8 73 70-144 217-301 (402)
186 1wxq_A GTP-binding protein; st 99.6 2.7E-14 9.3E-19 111.4 10.8 84 23-106 1-114 (397)
187 3avx_A Elongation factor TS, e 99.5 6.5E-15 2.2E-19 126.2 7.3 119 19-142 293-427 (1289)
188 1u0l_A Probable GTPase ENGC; p 99.5 2.6E-16 9E-21 118.6 -1.8 100 37-145 32-133 (301)
189 2dy1_A Elongation factor G; tr 99.5 1.9E-14 6.6E-19 118.7 8.6 116 20-140 7-139 (665)
190 2qag_C Septin-7; cell cycle, c 99.5 3.6E-14 1.2E-18 111.2 9.4 125 18-146 27-186 (418)
191 2x2e_A Dynamin-1; nitration, h 99.5 1E-13 3.5E-18 106.5 7.9 120 20-143 29-213 (353)
192 2qnr_A Septin-2, protein NEDD5 99.4 5.3E-14 1.8E-18 106.0 3.2 122 18-144 14-172 (301)
193 1jal_A YCHF protein; nucleotid 99.4 1.2E-12 4.1E-17 100.7 8.7 83 22-105 2-108 (363)
194 3vqt_A RF-3, peptide chain rel 99.4 9.9E-13 3.4E-17 106.3 7.9 119 19-142 28-167 (548)
195 1udx_A The GTP-binding protein 99.3 3.8E-12 1.3E-16 99.7 9.1 115 24-142 159-284 (416)
196 4a9a_A Ribosome-interacting GT 99.3 4.2E-12 1.4E-16 98.2 7.5 118 18-141 68-196 (376)
197 2hf9_A Probable hydrogenase ni 99.2 9.9E-15 3.4E-19 105.0 -10.0 37 21-57 37-73 (226)
198 4fn5_A EF-G 1, elongation fact 99.2 3.3E-11 1.1E-15 100.2 9.5 117 20-141 11-151 (709)
199 2ohf_A Protein OLA1, GTP-bindi 99.2 8.9E-12 3E-16 96.8 4.8 89 20-109 20-132 (396)
200 3j25_A Tetracycline resistance 99.1 4.2E-12 1.4E-16 104.4 -0.0 116 22-142 2-134 (638)
201 2wsm_A Hydrogenase expression/ 99.1 2.6E-11 8.8E-16 86.7 4.1 110 21-142 29-169 (221)
202 3p32_A Probable GTPase RV1496/ 99.1 1.8E-11 6.2E-16 94.1 2.9 61 70-142 172-232 (355)
203 3zvr_A Dynamin-1; hydrolase, D 99.1 7.3E-10 2.5E-14 92.3 10.9 118 20-142 49-232 (772)
204 2dby_A GTP-binding protein; GD 99.0 2.5E-10 8.6E-15 88.1 5.1 82 23-105 2-111 (368)
205 1yrb_A ATP(GTP)binding protein 99.0 3.5E-10 1.2E-14 82.8 5.5 72 70-143 109-187 (262)
206 2www_A Methylmalonic aciduria 99.0 2.3E-11 7.7E-16 93.4 -1.6 60 70-141 167-226 (349)
207 2p67_A LAO/AO transport system 98.9 1E-10 3.5E-15 89.4 0.7 61 70-142 149-209 (341)
208 1ni3_A YCHF GTPase, YCHF GTP-b 98.8 8.8E-09 3E-13 80.0 7.0 86 20-105 18-127 (392)
209 2qag_B Septin-6, protein NEDD5 98.7 1.2E-07 4.2E-12 74.3 10.5 114 21-140 41-189 (427)
210 3ec1_A YQEH GTPase; atnos1, at 98.7 8.8E-09 3E-13 79.5 3.9 109 22-140 162-287 (369)
211 2yv5_A YJEQ protein; hydrolase 98.7 1.9E-08 6.6E-13 75.6 5.6 61 80-144 66-127 (302)
212 3sop_A Neuronal-specific septi 98.7 6.7E-08 2.3E-12 71.6 7.7 115 22-141 2-154 (270)
213 3h2y_A GTPase family protein; 98.7 1.3E-08 4.4E-13 78.6 4.0 112 22-141 160-287 (368)
214 3l82_B F-box only protein 4; T 98.6 1.1E-08 3.7E-13 72.9 2.1 62 78-141 110-177 (227)
215 2qm8_A GTPase/ATPase; G protei 98.5 3.6E-08 1.2E-12 75.2 3.3 60 70-141 148-207 (337)
216 1puj_A YLQF, conserved hypothe 98.5 2.1E-07 7.3E-12 69.3 5.7 58 20-81 118-176 (282)
217 3cnl_A YLQF, putative uncharac 98.4 1.2E-07 4E-12 70.0 3.9 55 23-81 100-155 (262)
218 2j37_W Signal recognition part 98.4 7.5E-07 2.6E-11 71.3 7.0 114 20-141 99-254 (504)
219 3l2o_B F-box only protein 4; s 98.3 9.4E-08 3.2E-12 71.2 0.6 65 77-141 194-262 (312)
220 1f5n_A Interferon-induced guan 98.2 9.4E-07 3.2E-11 71.9 4.9 63 20-82 36-103 (592)
221 1tq4_A IIGP1, interferon-induc 98.1 9.3E-06 3.2E-10 63.5 8.2 111 23-140 70-188 (413)
222 3szr_A Interferon-induced GTP- 98.1 5.1E-06 1.7E-10 68.0 5.9 23 24-46 47-69 (608)
223 1bif_A 6-phosphofructo-2-kinas 98.0 1.6E-07 5.4E-12 74.6 -4.8 99 20-124 37-148 (469)
224 2v3c_C SRP54, signal recogniti 97.8 1.6E-05 5.5E-10 62.5 4.8 65 69-141 180-252 (432)
225 3h2y_A GTPase family protein; 97.8 6.7E-06 2.3E-10 63.4 2.0 57 79-142 55-111 (368)
226 3dm5_A SRP54, signal recogniti 97.7 6.1E-05 2.1E-09 59.3 6.0 23 21-43 99-121 (443)
227 3ec1_A YQEH GTPase; atnos1, at 97.6 1.1E-05 3.8E-10 62.1 1.3 57 79-142 57-113 (369)
228 3ney_A 55 kDa erythrocyte memb 97.6 3.4E-05 1.2E-09 54.4 3.4 29 17-45 14-42 (197)
229 1ye8_A Protein THEP1, hypothet 97.6 4.9E-05 1.7E-09 52.6 3.3 22 24-45 2-23 (178)
230 1kgd_A CASK, peripheral plasma 97.5 4.6E-05 1.6E-09 52.6 3.1 23 23-45 6-28 (180)
231 1lvg_A Guanylate kinase, GMP k 97.5 5.6E-05 1.9E-09 53.1 3.1 22 23-44 5-26 (198)
232 3q5d_A Atlastin-1; G protein, 97.5 0.00018 6.2E-09 56.7 6.2 26 20-45 65-90 (447)
233 3a00_A Guanylate kinase, GMP k 97.4 9.1E-05 3.1E-09 51.3 3.0 21 25-45 4-24 (186)
234 1s96_A Guanylate kinase, GMP k 97.4 9.9E-05 3.4E-09 52.8 3.0 23 23-45 17-39 (219)
235 1znw_A Guanylate kinase, GMP k 97.4 0.0001 3.4E-09 52.0 3.0 24 22-45 20-43 (207)
236 3tr0_A Guanylate kinase, GMP k 97.4 0.0001 3.5E-09 51.4 3.0 22 24-45 9-30 (205)
237 1ex7_A Guanylate kinase; subst 97.4 0.00011 3.9E-09 51.2 3.2 21 25-45 4-24 (186)
238 4gp7_A Metallophosphoesterase; 97.4 9.6E-05 3.3E-09 50.6 2.7 19 24-42 11-29 (171)
239 1zp6_A Hypothetical protein AT 97.3 0.00011 3.8E-09 50.7 3.0 23 23-45 10-32 (191)
240 1z6g_A Guanylate kinase; struc 97.3 0.00012 4E-09 52.2 3.0 23 23-45 24-46 (218)
241 3tau_A Guanylate kinase, GMP k 97.3 0.00014 4.9E-09 51.3 3.0 23 23-45 9-31 (208)
242 3c8u_A Fructokinase; YP_612366 97.2 0.00019 6.6E-09 50.5 3.2 25 20-44 20-44 (208)
243 3tif_A Uncharacterized ABC tra 97.2 0.00018 6.3E-09 51.9 3.0 22 24-45 33-54 (235)
244 2qor_A Guanylate kinase; phosp 97.2 0.0002 6.9E-09 50.2 3.2 22 23-44 13-34 (204)
245 2cdn_A Adenylate kinase; phosp 97.2 0.00026 9.1E-09 49.4 3.7 25 20-44 18-42 (201)
246 3umf_A Adenylate kinase; rossm 97.2 0.00028 9.5E-09 50.4 3.9 21 24-44 31-51 (217)
247 3asz_A Uridine kinase; cytidin 97.2 0.00025 8.6E-09 49.8 3.3 24 21-44 5-28 (211)
248 1ly1_A Polynucleotide kinase; 97.2 0.00031 1.1E-08 47.8 3.6 22 23-44 3-24 (181)
249 1htw_A HI0065; nucleotide-bind 97.2 0.00024 8.3E-09 48.2 3.0 23 24-46 35-57 (158)
250 1y63_A LMAJ004144AAA protein; 97.2 0.00028 9.7E-09 48.7 3.4 26 20-45 8-33 (184)
251 1ukz_A Uridylate kinase; trans 97.1 0.00038 1.3E-08 48.5 4.0 24 20-43 13-36 (203)
252 1knq_A Gluconate kinase; ALFA/ 97.1 0.00033 1.1E-08 47.7 3.6 22 23-44 9-30 (175)
253 1kag_A SKI, shikimate kinase I 97.1 0.00026 8.9E-09 48.0 3.0 22 23-44 5-26 (173)
254 2rcn_A Probable GTPase ENGC; Y 97.1 0.00025 8.6E-09 54.4 3.2 24 24-47 217-240 (358)
255 2pcj_A ABC transporter, lipopr 97.1 0.00023 8E-09 50.9 2.8 22 24-45 32-53 (224)
256 4eun_A Thermoresistant glucoki 97.1 0.0003 1E-08 49.2 3.3 24 21-44 28-51 (200)
257 3kb2_A SPBC2 prophage-derived 97.1 0.00026 9.1E-09 47.8 2.9 21 24-44 3-23 (173)
258 2bdt_A BH3686; alpha-beta prot 97.1 0.00027 9.1E-09 48.8 3.0 21 24-44 4-24 (189)
259 3lw7_A Adenylate kinase relate 97.1 0.00028 9.4E-09 47.6 3.0 19 24-42 3-21 (179)
260 2onk_A Molybdate/tungstate ABC 97.1 0.00029 9.9E-09 51.0 3.2 22 24-45 26-47 (240)
261 2j41_A Guanylate kinase; GMP, 97.1 0.00031 1.1E-08 48.9 3.3 24 23-46 7-30 (207)
262 1b0u_A Histidine permease; ABC 97.1 0.00029 9.9E-09 51.7 3.0 22 24-45 34-55 (262)
263 2bbw_A Adenylate kinase 4, AK4 97.1 0.00035 1.2E-08 50.4 3.4 22 22-43 27-48 (246)
264 2i3b_A HCR-ntpase, human cance 97.1 0.00029 9.8E-09 49.2 2.8 21 24-44 3-23 (189)
265 3gfo_A Cobalt import ATP-bindi 97.1 0.0003 1E-08 52.1 3.0 22 24-45 36-57 (275)
266 2cbz_A Multidrug resistance-as 97.1 0.00031 1E-08 50.8 3.0 22 24-45 33-54 (237)
267 1sgw_A Putative ABC transporte 97.1 0.00032 1.1E-08 50.0 3.0 22 24-45 37-58 (214)
268 1qhx_A CPT, protein (chloramph 97.1 0.00035 1.2E-08 47.6 3.0 22 23-44 4-25 (178)
269 1g6h_A High-affinity branched- 97.0 0.00033 1.1E-08 51.2 3.0 22 24-45 35-56 (257)
270 1mv5_A LMRA, multidrug resista 97.0 0.00038 1.3E-08 50.5 3.3 22 24-45 30-51 (243)
271 4g1u_C Hemin import ATP-bindin 97.0 0.00034 1.2E-08 51.5 3.0 23 24-46 39-61 (266)
272 2ff7_A Alpha-hemolysin translo 97.0 0.00038 1.3E-08 50.6 3.2 22 24-45 37-58 (247)
273 2eyu_A Twitching motility prot 97.0 0.00035 1.2E-08 51.3 3.0 22 23-44 26-47 (261)
274 2pze_A Cystic fibrosis transme 97.0 0.00036 1.2E-08 50.1 3.0 22 24-45 36-57 (229)
275 2olj_A Amino acid ABC transpor 97.0 0.00037 1.3E-08 51.2 3.0 22 24-45 52-73 (263)
276 1ji0_A ABC transporter; ATP bi 97.0 0.00037 1.2E-08 50.5 3.0 22 24-45 34-55 (240)
277 2qi9_C Vitamin B12 import ATP- 97.0 0.00039 1.3E-08 50.7 3.0 22 24-45 28-49 (249)
278 2d2e_A SUFC protein; ABC-ATPas 97.0 0.00042 1.4E-08 50.5 3.2 22 24-45 31-52 (250)
279 3t61_A Gluconokinase; PSI-biol 97.0 0.00041 1.4E-08 48.4 3.0 23 22-44 18-40 (202)
280 1puj_A YLQF, conserved hypothe 97.0 0.00045 1.5E-08 51.2 3.3 59 75-142 4-65 (282)
281 3vaa_A Shikimate kinase, SK; s 97.0 0.00049 1.7E-08 48.0 3.4 22 22-43 25-46 (199)
282 1vpl_A ABC transporter, ATP-bi 97.0 0.00041 1.4E-08 50.8 3.0 22 24-45 43-64 (256)
283 2zu0_C Probable ATP-dependent 97.0 0.00044 1.5E-08 50.9 3.2 22 24-45 48-69 (267)
284 2ghi_A Transport protein; mult 97.0 0.0004 1.4E-08 50.9 3.0 22 24-45 48-69 (260)
285 1u0l_A Probable GTPase ENGC; p 97.0 0.00037 1.3E-08 52.1 2.8 24 23-46 170-193 (301)
286 2ixe_A Antigen peptide transpo 97.0 0.00041 1.4E-08 51.2 3.0 22 24-45 47-68 (271)
287 1np6_A Molybdopterin-guanine d 97.0 0.00045 1.5E-08 47.6 3.0 23 23-45 7-29 (174)
288 3b85_A Phosphate starvation-in 97.0 0.00033 1.1E-08 49.6 2.4 22 24-45 24-45 (208)
289 2ehv_A Hypothetical protein PH 97.0 0.00047 1.6E-08 49.4 3.2 20 24-43 32-51 (251)
290 3uie_A Adenylyl-sulfate kinase 97.0 0.00045 1.5E-08 48.2 3.0 24 21-44 24-47 (200)
291 2rhm_A Putative kinase; P-loop 97.0 0.00053 1.8E-08 47.2 3.3 23 22-44 5-27 (193)
292 3fb4_A Adenylate kinase; psych 97.0 0.0005 1.7E-08 48.4 3.2 20 24-43 2-21 (216)
293 2ihy_A ABC transporter, ATP-bi 97.0 0.00049 1.7E-08 51.0 3.3 22 24-45 49-70 (279)
294 4a74_A DNA repair and recombin 97.0 0.00042 1.4E-08 49.0 2.8 23 24-46 27-49 (231)
295 1qf9_A UMP/CMP kinase, protein 97.0 0.00063 2.1E-08 46.7 3.6 23 22-44 6-28 (194)
296 3cm0_A Adenylate kinase; ATP-b 96.9 0.00064 2.2E-08 46.6 3.6 22 22-43 4-25 (186)
297 2v9p_A Replication protein E1; 96.9 0.00048 1.6E-08 51.7 3.2 21 24-44 128-148 (305)
298 3ec2_A DNA replication protein 96.9 0.0004 1.4E-08 47.6 2.5 23 22-44 38-60 (180)
299 1nks_A Adenylate kinase; therm 96.9 0.00059 2E-08 46.8 3.4 21 24-44 3-23 (194)
300 2yv5_A YJEQ protein; hydrolase 96.9 0.00049 1.7E-08 51.5 3.1 21 23-43 166-186 (302)
301 1t9h_A YLOQ, probable GTPase E 96.9 0.00015 5.3E-09 54.4 0.4 24 23-46 174-197 (307)
302 2nq2_C Hypothetical ABC transp 96.9 0.00048 1.6E-08 50.3 3.0 22 24-45 33-54 (253)
303 3dl0_A Adenylate kinase; phosp 96.9 0.00055 1.9E-08 48.2 3.2 21 24-44 2-22 (216)
304 2yz2_A Putative ABC transporte 96.9 0.00049 1.7E-08 50.6 3.0 22 24-45 35-56 (266)
305 1ak2_A Adenylate kinase isoenz 96.9 0.00058 2E-08 48.9 3.3 24 21-44 15-38 (233)
306 3iij_A Coilin-interacting nucl 96.9 0.00056 1.9E-08 46.8 3.1 22 22-43 11-32 (180)
307 3lnc_A Guanylate kinase, GMP k 96.9 0.0003 1E-08 50.2 1.8 23 23-45 28-51 (231)
308 2if2_A Dephospho-COA kinase; a 96.9 0.00055 1.9E-08 47.7 3.1 22 23-44 2-23 (204)
309 3trf_A Shikimate kinase, SK; a 96.9 0.0006 2.1E-08 46.7 3.2 21 23-43 6-26 (185)
310 1kht_A Adenylate kinase; phosp 96.9 0.00061 2.1E-08 46.7 3.2 21 23-43 4-24 (192)
311 2jaq_A Deoxyguanosine kinase; 96.9 0.00067 2.3E-08 47.0 3.4 21 24-44 2-22 (205)
312 1cke_A CK, MSSA, protein (cyti 96.9 0.00064 2.2E-08 48.1 3.3 22 23-44 6-27 (227)
313 1lw7_A Transcriptional regulat 96.9 0.00049 1.7E-08 52.7 2.8 24 22-45 170-193 (365)
314 3tlx_A Adenylate kinase 2; str 96.9 0.00078 2.7E-08 48.7 3.7 24 21-44 28-51 (243)
315 2pjz_A Hypothetical protein ST 96.9 0.00065 2.2E-08 49.9 3.3 23 24-46 32-54 (263)
316 2qt1_A Nicotinamide riboside k 96.9 0.00088 3E-08 46.9 3.8 24 22-45 21-44 (207)
317 1tev_A UMP-CMP kinase; ploop, 96.8 0.00084 2.9E-08 46.1 3.6 22 22-43 3-24 (196)
318 1gvn_B Zeta; postsegregational 96.8 0.0008 2.7E-08 49.9 3.6 24 21-44 32-55 (287)
319 2f1r_A Molybdopterin-guanine d 96.8 0.00032 1.1E-08 48.2 1.3 21 24-44 4-24 (171)
320 1aky_A Adenylate kinase; ATP:A 96.8 0.00075 2.6E-08 47.7 3.3 23 22-44 4-26 (220)
321 2plr_A DTMP kinase, probable t 96.8 0.00084 2.9E-08 46.8 3.5 22 23-44 5-26 (213)
322 3fvq_A Fe(3+) IONS import ATP- 96.8 0.00062 2.1E-08 52.2 3.0 23 24-46 32-54 (359)
323 1jjv_A Dephospho-COA kinase; P 96.8 0.00088 3E-08 46.8 3.5 22 23-44 3-24 (206)
324 1zak_A Adenylate kinase; ATP:A 96.8 0.00058 2E-08 48.4 2.6 22 22-43 5-26 (222)
325 3sr0_A Adenylate kinase; phosp 96.8 0.00082 2.8E-08 47.5 3.4 21 24-44 2-22 (206)
326 1zd8_A GTP:AMP phosphotransfer 96.8 0.00071 2.4E-08 48.1 3.1 22 22-43 7-28 (227)
327 3nh6_A ATP-binding cassette SU 96.8 0.00048 1.6E-08 51.7 2.1 22 24-45 82-103 (306)
328 1via_A Shikimate kinase; struc 96.8 0.0007 2.4E-08 46.1 2.8 21 24-44 6-26 (175)
329 3be4_A Adenylate kinase; malar 96.8 0.00085 2.9E-08 47.5 3.2 24 21-44 4-27 (217)
330 1z47_A CYSA, putative ABC-tran 96.8 0.00077 2.6E-08 51.6 3.2 23 24-46 43-65 (355)
331 3aez_A Pantothenate kinase; tr 96.8 0.001 3.4E-08 50.1 3.7 25 20-44 88-112 (312)
332 1rj9_A FTSY, signal recognitio 96.8 0.00074 2.5E-08 50.6 3.0 22 22-43 102-123 (304)
333 2bbs_A Cystic fibrosis transme 96.8 0.00077 2.6E-08 50.2 3.0 22 24-45 66-87 (290)
334 2vp4_A Deoxynucleoside kinase; 96.8 0.00093 3.2E-08 47.8 3.4 26 20-45 18-43 (230)
335 1e4v_A Adenylate kinase; trans 96.8 0.00089 3E-08 47.2 3.1 21 24-44 2-22 (214)
336 2it1_A 362AA long hypothetical 96.8 0.00084 2.9E-08 51.6 3.2 23 24-46 31-53 (362)
337 2yyz_A Sugar ABC transporter, 96.7 0.00083 2.8E-08 51.5 3.2 23 24-46 31-53 (359)
338 3rlf_A Maltose/maltodextrin im 96.7 0.00085 2.9E-08 51.9 3.2 23 24-46 31-53 (381)
339 3tui_C Methionine import ATP-b 96.7 0.0009 3.1E-08 51.5 3.2 22 24-45 56-77 (366)
340 1g29_1 MALK, maltose transport 96.7 0.00089 3E-08 51.6 3.2 23 24-46 31-53 (372)
341 1jbk_A CLPB protein; beta barr 96.7 0.00095 3.3E-08 45.3 3.0 22 23-44 44-65 (195)
342 2v54_A DTMP kinase, thymidylat 96.7 0.0011 3.6E-08 46.1 3.3 24 22-45 4-27 (204)
343 3b9q_A Chloroplast SRP recepto 96.7 0.00088 3E-08 50.1 3.0 24 21-44 99-122 (302)
344 1v43_A Sugar-binding transport 96.7 0.00094 3.2E-08 51.5 3.2 23 24-46 39-61 (372)
345 2p5t_B PEZT; postsegregational 96.7 0.00089 3.1E-08 48.6 3.0 25 20-44 30-54 (253)
346 2vli_A Antibiotic resistance p 96.7 0.00068 2.3E-08 46.3 2.2 22 22-43 5-26 (183)
347 3jvv_A Twitching mobility prot 96.7 0.00088 3E-08 51.3 3.0 21 24-44 125-145 (356)
348 2c95_A Adenylate kinase 1; tra 96.7 0.00097 3.3E-08 45.9 3.0 22 22-43 9-30 (196)
349 1nn5_A Similar to deoxythymidy 96.7 0.001 3.5E-08 46.5 3.1 23 22-44 9-31 (215)
350 1ixz_A ATP-dependent metallopr 96.7 0.0011 3.6E-08 48.0 3.1 21 25-45 52-72 (254)
351 2pt5_A Shikimate kinase, SK; a 96.7 0.0013 4.3E-08 44.3 3.3 21 24-44 2-22 (168)
352 2jeo_A Uridine-cytidine kinase 96.7 0.0013 4.3E-08 47.5 3.4 24 21-44 24-47 (245)
353 2kjq_A DNAA-related protein; s 96.7 0.00076 2.6E-08 45.2 2.1 23 23-45 37-59 (149)
354 2ze6_A Isopentenyl transferase 96.7 0.0011 3.7E-08 48.3 3.1 21 24-44 3-23 (253)
355 2x8a_A Nuclear valosin-contain 96.6 0.001 3.6E-08 49.0 3.0 21 25-45 47-67 (274)
356 1uf9_A TT1252 protein; P-loop, 96.6 0.0013 4.5E-08 45.5 3.3 25 21-45 7-31 (203)
357 2wwf_A Thymidilate kinase, put 96.6 0.0014 4.8E-08 45.7 3.5 23 22-44 10-32 (212)
358 3d31_A Sulfate/molybdate ABC t 96.6 0.00076 2.6E-08 51.5 2.1 23 24-46 28-50 (348)
359 2yvu_A Probable adenylyl-sulfa 96.6 0.0018 6E-08 44.5 3.8 24 21-44 12-35 (186)
360 1odf_A YGR205W, hypothetical 3 96.6 0.0016 5.3E-08 48.5 3.8 24 20-43 29-52 (290)
361 2ewv_A Twitching motility prot 96.6 0.0011 3.7E-08 51.1 2.9 21 24-44 138-158 (372)
362 2xb4_A Adenylate kinase; ATP-b 96.6 0.0013 4.5E-08 46.7 3.2 21 24-44 2-22 (223)
363 2gza_A Type IV secretion syste 96.6 0.0011 3.6E-08 50.9 2.9 22 24-45 177-198 (361)
364 2bwj_A Adenylate kinase 5; pho 96.6 0.0011 3.6E-08 45.9 2.6 23 22-44 12-34 (199)
365 2w0m_A SSO2452; RECA, SSPF, un 96.6 0.0012 4.2E-08 46.5 3.0 21 24-44 25-45 (235)
366 1xjc_A MOBB protein homolog; s 96.6 0.0014 4.6E-08 45.0 3.1 22 23-44 5-26 (169)
367 3gd7_A Fusion complex of cysti 96.6 0.0012 3.9E-08 51.3 3.0 22 24-45 49-70 (390)
368 3kta_A Chromosome segregation 96.6 0.0013 4.5E-08 44.9 3.0 21 24-44 28-48 (182)
369 1gtv_A TMK, thymidylate kinase 96.6 0.00049 1.7E-08 48.2 0.8 21 24-44 2-22 (214)
370 2pt7_A CAG-ALFA; ATPase, prote 96.6 0.0011 3.9E-08 50.1 2.9 23 24-46 173-195 (330)
371 1rz3_A Hypothetical protein rb 96.6 0.0015 5.2E-08 45.6 3.4 24 21-44 21-44 (201)
372 3e70_C DPA, signal recognition 96.6 0.0016 5.6E-08 49.3 3.7 25 20-44 127-151 (328)
373 3a4m_A L-seryl-tRNA(SEC) kinas 96.6 0.0016 5.5E-08 47.4 3.5 22 23-44 5-26 (260)
374 1e6c_A Shikimate kinase; phosp 96.6 0.0014 4.9E-08 44.2 3.1 21 24-44 4-24 (173)
375 3tqc_A Pantothenate kinase; bi 96.6 0.0018 6.1E-08 48.9 3.7 24 20-43 90-113 (321)
376 4e22_A Cytidylate kinase; P-lo 96.6 0.0016 5.5E-08 47.2 3.4 22 22-43 27-48 (252)
377 2z0h_A DTMP kinase, thymidylat 96.5 0.0015 5E-08 45.1 3.0 21 24-44 2-22 (197)
378 1sq5_A Pantothenate kinase; P- 96.5 0.0017 5.8E-08 48.6 3.5 24 21-44 79-102 (308)
379 2og2_A Putative signal recogni 96.5 0.0015 5E-08 50.2 3.0 24 21-44 156-179 (359)
380 2iyv_A Shikimate kinase, SK; t 96.5 0.0016 5.6E-08 44.5 3.0 21 24-44 4-24 (184)
381 1iy2_A ATP-dependent metallopr 96.5 0.0016 5.3E-08 47.8 3.1 22 24-45 75-96 (278)
382 2pbr_A DTMP kinase, thymidylat 96.5 0.0016 5.5E-08 44.7 3.0 21 24-44 2-22 (195)
383 1oxx_K GLCV, glucose, ABC tran 96.5 0.00076 2.6E-08 51.6 1.4 23 24-46 33-55 (353)
384 1vht_A Dephospho-COA kinase; s 96.5 0.002 7E-08 45.3 3.5 23 22-44 4-26 (218)
385 1uj2_A Uridine-cytidine kinase 96.5 0.0019 6.6E-08 46.7 3.4 27 18-44 18-44 (252)
386 3cnl_A YLQF, putative uncharac 96.5 0.0011 3.6E-08 48.7 2.1 57 77-142 4-61 (262)
387 1p9r_A General secretion pathw 96.5 0.0015 5.2E-08 51.1 3.0 22 24-45 169-190 (418)
388 2yhs_A FTSY, cell division pro 96.5 0.0016 5.4E-08 52.0 3.1 24 21-44 292-315 (503)
389 1in4_A RUVB, holliday junction 96.5 0.0016 5.5E-08 49.2 3.0 22 24-45 53-74 (334)
390 2pez_A Bifunctional 3'-phospho 96.5 0.0023 7.7E-08 43.7 3.5 23 22-44 5-27 (179)
391 2p65_A Hypothetical protein PF 96.5 0.0014 4.8E-08 44.4 2.4 23 22-44 43-65 (187)
392 1cr0_A DNA primase/helicase; R 96.4 0.0016 5.6E-08 48.1 2.8 21 24-44 37-57 (296)
393 2cvh_A DNA repair and recombin 96.4 0.0019 6.5E-08 45.2 3.0 21 24-44 22-42 (220)
394 1n0w_A DNA repair protein RAD5 96.4 0.002 6.8E-08 45.8 3.1 22 24-45 26-47 (243)
395 2npi_A Protein CLP1; CLP1-PCF1 96.4 0.0015 5.2E-08 51.7 2.6 23 23-45 139-161 (460)
396 3bos_A Putative DNA replicatio 96.4 0.0022 7.6E-08 45.3 3.2 23 22-44 52-74 (242)
397 1p5z_B DCK, deoxycytidine kina 96.4 0.0015 5E-08 47.6 2.3 25 20-44 22-46 (263)
398 1zuh_A Shikimate kinase; alpha 96.4 0.0025 8.4E-08 43.0 3.3 22 23-44 8-29 (168)
399 3r20_A Cytidylate kinase; stru 96.4 0.0024 8.1E-08 46.1 3.3 23 21-43 8-30 (233)
400 2f6r_A COA synthase, bifunctio 96.3 0.0025 8.5E-08 47.1 3.4 25 19-43 72-96 (281)
401 1f2t_A RAD50 ABC-ATPase; DNA d 96.3 0.0026 8.9E-08 42.5 3.2 19 25-43 26-44 (149)
402 2obl_A ESCN; ATPase, hydrolase 96.3 0.0022 7.4E-08 49.0 3.1 23 24-46 73-95 (347)
403 2oap_1 GSPE-2, type II secreti 96.3 0.002 6.8E-08 51.7 3.0 23 24-46 262-284 (511)
404 1nij_A Hypothetical protein YJ 96.3 0.0015 5.2E-08 49.1 2.2 24 23-46 5-28 (318)
405 1lv7_A FTSH; alpha/beta domain 96.3 0.0023 7.8E-08 46.3 3.0 22 23-44 46-67 (257)
406 1m7g_A Adenylylsulfate kinase; 96.3 0.0023 7.9E-08 44.9 3.0 24 21-44 24-47 (211)
407 1ltq_A Polynucleotide kinase; 96.3 0.003 1E-07 46.7 3.6 22 23-44 3-24 (301)
408 2w58_A DNAI, primosome compone 96.3 0.0028 9.5E-08 44.0 3.2 22 23-44 55-76 (202)
409 3nwj_A ATSK2; P loop, shikimat 96.3 0.0022 7.7E-08 46.7 2.8 23 22-44 48-70 (250)
410 4eaq_A DTMP kinase, thymidylat 96.3 0.0036 1.2E-07 44.8 3.7 24 21-44 25-48 (229)
411 1njg_A DNA polymerase III subu 96.2 0.0028 9.6E-08 44.4 3.0 21 24-44 47-67 (250)
412 2chg_A Replication factor C sm 96.2 0.003 1E-07 43.8 3.0 21 24-44 40-60 (226)
413 2dpy_A FLII, flagellum-specifi 96.2 0.0028 9.6E-08 49.8 3.1 23 24-46 159-181 (438)
414 1t9h_A YLOQ, probable GTPase E 96.2 0.0086 3E-07 44.9 5.5 53 86-142 79-132 (307)
415 1yqt_A RNAse L inhibitor; ATP- 96.2 0.0033 1.1E-07 50.7 3.4 23 24-46 49-71 (538)
416 3b60_A Lipid A export ATP-bind 96.2 0.0029 9.8E-08 51.4 3.1 22 24-45 371-392 (582)
417 3euj_A Chromosome partition pr 96.2 0.0029 1E-07 50.3 3.1 21 24-44 31-51 (483)
418 3zvl_A Bifunctional polynucleo 96.1 0.0053 1.8E-07 47.9 4.3 24 21-44 257-280 (416)
419 1nlf_A Regulatory protein REPA 96.1 0.003 1E-07 46.3 2.8 21 24-44 32-52 (279)
420 3b5x_A Lipid A export ATP-bind 96.1 0.0033 1.1E-07 51.1 3.2 23 24-46 371-393 (582)
421 3ozx_A RNAse L inhibitor; ATP 96.1 0.0034 1.1E-07 50.7 3.0 23 24-46 27-49 (538)
422 3qf7_A RAD50; ABC-ATPase, ATPa 96.0 0.0038 1.3E-07 47.8 3.2 19 25-43 26-44 (365)
423 3t15_A Ribulose bisphosphate c 96.0 0.0043 1.5E-07 46.0 3.3 23 22-44 36-58 (293)
424 2qz4_A Paraplegin; AAA+, SPG7, 96.0 0.004 1.4E-07 44.8 3.1 22 23-44 40-61 (262)
425 3b9p_A CG5977-PA, isoform A; A 96.0 0.0037 1.3E-07 46.0 2.9 23 22-44 54-76 (297)
426 3h4m_A Proteasome-activating n 96.0 0.0038 1.3E-07 45.7 3.0 24 22-45 51-74 (285)
427 2dr3_A UPF0273 protein PH0284; 96.0 0.0039 1.4E-07 44.3 3.0 21 24-44 25-45 (247)
428 3n70_A Transport activator; si 96.0 0.0044 1.5E-07 40.9 3.0 25 22-46 24-48 (145)
429 1q3t_A Cytidylate kinase; nucl 96.0 0.0047 1.6E-07 44.1 3.3 26 19-44 13-38 (236)
430 2yl4_A ATP-binding cassette SU 96.0 0.003 1E-07 51.5 2.5 22 24-45 372-393 (595)
431 1svm_A Large T antigen; AAA+ f 96.0 0.004 1.4E-07 48.0 3.0 22 23-44 170-191 (377)
432 3j16_B RLI1P; ribosome recycli 96.0 0.0041 1.4E-07 50.9 3.2 23 24-46 105-127 (608)
433 2qmh_A HPR kinase/phosphorylas 96.0 0.0045 1.5E-07 43.6 3.0 24 22-45 34-57 (205)
434 3qf4_B Uncharacterized ABC tra 95.9 0.0034 1.2E-07 51.2 2.6 22 24-45 383-404 (598)
435 2qby_A CDC6 homolog 1, cell di 95.9 0.0041 1.4E-07 47.0 2.9 23 22-44 45-67 (386)
436 1l8q_A Chromosomal replication 95.9 0.0044 1.5E-07 46.3 2.9 22 23-44 38-59 (324)
437 3syl_A Protein CBBX; photosynt 95.9 0.0062 2.1E-07 45.0 3.7 23 21-43 66-88 (309)
438 2px0_A Flagellar biosynthesis 95.9 0.0044 1.5E-07 46.2 2.8 22 22-43 105-126 (296)
439 2grj_A Dephospho-COA kinase; T 95.9 0.0069 2.3E-07 42.2 3.6 24 21-44 11-34 (192)
440 1d2n_A N-ethylmaleimide-sensit 95.9 0.0071 2.4E-07 44.0 3.8 26 20-45 62-87 (272)
441 4a82_A Cystic fibrosis transme 95.9 0.0029 9.9E-08 51.4 1.9 21 24-44 369-389 (578)
442 3cf0_A Transitional endoplasmi 95.8 0.0049 1.7E-07 45.8 2.9 23 23-45 50-72 (301)
443 3crm_A TRNA delta(2)-isopenten 95.8 0.0068 2.3E-07 45.8 3.7 22 23-44 6-27 (323)
444 3bk7_A ABC transporter ATP-bin 95.8 0.0053 1.8E-07 50.2 3.3 23 24-46 119-141 (607)
445 1vma_A Cell division protein F 95.8 0.0054 1.8E-07 46.0 3.1 23 21-43 103-125 (306)
446 3ozx_A RNAse L inhibitor; ATP 95.8 0.005 1.7E-07 49.7 3.0 23 24-46 296-318 (538)
447 3qf4_A ABC transporter, ATP-bi 95.8 0.0038 1.3E-07 50.8 2.3 22 24-45 371-392 (587)
448 1fnn_A CDC6P, cell division co 95.8 0.0054 1.9E-07 46.6 3.1 22 24-45 46-67 (389)
449 1yqt_A RNAse L inhibitor; ATP- 95.8 0.0061 2.1E-07 49.1 3.4 23 24-46 314-336 (538)
450 1sxj_E Activator 1 40 kDa subu 95.8 0.0044 1.5E-07 46.7 2.5 20 25-44 39-58 (354)
451 1ofh_A ATP-dependent HSL prote 95.8 0.0059 2E-07 44.9 3.1 23 22-44 50-72 (310)
452 1c9k_A COBU, adenosylcobinamid 95.7 0.0069 2.4E-07 41.9 3.1 21 25-45 2-22 (180)
453 1tue_A Replication protein E1; 95.7 0.0045 1.6E-07 43.8 2.2 21 24-44 60-80 (212)
454 3qks_A DNA double-strand break 95.7 0.0069 2.4E-07 42.5 3.2 19 25-43 26-44 (203)
455 3bk7_A ABC transporter ATP-bin 95.7 0.006 2.1E-07 49.9 3.2 23 24-46 384-406 (607)
456 1pzn_A RAD51, DNA repair and r 95.7 0.0055 1.9E-07 46.7 2.8 23 24-46 133-155 (349)
457 3ake_A Cytidylate kinase; CMP 95.7 0.0065 2.2E-07 42.1 3.0 21 24-44 4-24 (208)
458 1azs_C GS-alpha; complex (lyas 95.7 0.0072 2.4E-07 47.0 3.3 25 19-43 37-61 (402)
459 4fcw_A Chaperone protein CLPB; 95.6 0.0068 2.3E-07 44.8 3.0 22 23-44 48-69 (311)
460 1sxj_C Activator 1 40 kDa subu 95.6 0.0066 2.2E-07 45.7 2.9 22 24-45 48-69 (340)
461 3a8t_A Adenylate isopentenyltr 95.6 0.0097 3.3E-07 45.2 3.8 22 23-44 41-62 (339)
462 3foz_A TRNA delta(2)-isopenten 95.6 0.0097 3.3E-07 44.7 3.7 22 23-44 11-32 (316)
463 3d3q_A TRNA delta(2)-isopenten 95.6 0.0074 2.5E-07 45.9 3.1 22 23-44 8-29 (340)
464 2qen_A Walker-type ATPase; unk 95.6 0.0072 2.5E-07 45.1 3.1 23 23-45 32-54 (350)
465 3exa_A TRNA delta(2)-isopenten 95.6 0.0078 2.7E-07 45.3 3.2 21 24-44 5-25 (322)
466 2v1u_A Cell division control p 95.6 0.0062 2.1E-07 46.1 2.6 23 22-44 44-66 (387)
467 2ga8_A Hypothetical 39.9 kDa p 95.6 0.0099 3.4E-07 45.5 3.7 23 21-43 23-45 (359)
468 3j16_B RLI1P; ribosome recycli 95.6 0.0075 2.6E-07 49.4 3.2 22 25-46 381-402 (608)
469 1xwi_A SKD1 protein; VPS4B, AA 95.5 0.0077 2.6E-07 45.3 2.9 23 23-45 46-68 (322)
470 1sxj_D Activator 1 41 kDa subu 95.5 0.0079 2.7E-07 45.1 3.0 22 24-45 60-81 (353)
471 2fna_A Conserved hypothetical 95.5 0.0074 2.5E-07 45.1 2.8 22 24-45 32-53 (357)
472 2ocp_A DGK, deoxyguanosine kin 95.5 0.01 3.5E-07 42.4 3.4 22 23-44 3-24 (241)
473 2iw3_A Elongation factor 3A; a 95.5 0.0092 3.2E-07 51.3 3.6 24 24-47 463-486 (986)
474 3tqf_A HPR(Ser) kinase; transf 95.5 0.0092 3.1E-07 41.2 2.9 23 23-45 17-39 (181)
475 1tf7_A KAIC; homohexamer, hexa 95.5 0.0078 2.7E-07 48.3 2.9 19 25-43 42-60 (525)
476 3eie_A Vacuolar protein sortin 95.5 0.0092 3.1E-07 44.7 3.2 23 22-44 51-73 (322)
477 3pxg_A Negative regulator of g 95.4 0.008 2.7E-07 47.6 2.9 22 23-44 202-223 (468)
478 3co5_A Putative two-component 95.4 0.0046 1.6E-07 40.8 1.3 22 23-44 28-49 (143)
479 3lda_A DNA repair protein RAD5 95.4 0.0086 2.9E-07 46.5 2.9 20 24-43 180-199 (400)
480 2qgz_A Helicase loader, putati 95.4 0.01 3.4E-07 44.4 3.2 23 22-44 152-174 (308)
481 4ido_A Atlastin-1; GTPase, GTP 95.4 0.032 1.1E-06 44.1 6.1 23 21-43 66-88 (457)
482 3uk6_A RUVB-like 2; hexameric 95.4 0.0084 2.9E-07 45.4 2.8 22 23-44 71-92 (368)
483 2h92_A Cytidylate kinase; ross 95.4 0.0094 3.2E-07 41.8 2.8 22 23-44 4-25 (219)
484 2r62_A Cell division protease 95.4 0.0041 1.4E-07 45.1 0.9 21 24-44 46-66 (268)
485 2qby_B CDC6 homolog 3, cell di 95.3 0.0091 3.1E-07 45.3 2.9 22 23-44 46-67 (384)
486 4b4t_M 26S protease regulatory 95.3 0.011 3.8E-07 46.4 3.4 23 22-44 215-237 (434)
487 3u61_B DNA polymerase accessor 95.3 0.022 7.4E-07 42.4 4.9 21 25-45 51-71 (324)
488 3cr8_A Sulfate adenylyltranfer 95.3 0.0068 2.3E-07 49.1 2.2 24 21-44 368-391 (552)
489 3m6a_A ATP-dependent protease 95.3 0.0093 3.2E-07 48.1 3.0 21 24-44 110-130 (543)
490 3pfi_A Holliday junction ATP-d 95.3 0.01 3.6E-07 44.4 3.0 23 23-45 56-78 (338)
491 4b4t_K 26S protease regulatory 95.3 0.012 4E-07 46.2 3.3 22 23-44 207-228 (428)
492 1um8_A ATP-dependent CLP prote 95.2 0.011 3.8E-07 45.1 3.1 23 22-44 72-94 (376)
493 3qkt_A DNA double-strand break 95.2 0.012 4.1E-07 44.5 3.2 19 25-43 26-44 (339)
494 2axn_A 6-phosphofructo-2-kinas 95.2 0.022 7.5E-07 45.7 4.8 23 21-43 34-56 (520)
495 2bjv_A PSP operon transcriptio 95.2 0.013 4.3E-07 42.5 3.2 24 23-46 30-53 (265)
496 4f4c_A Multidrug resistance pr 95.2 0.0067 2.3E-07 53.9 1.9 21 24-44 1107-1127(1321)
497 2z4s_A Chromosomal replication 95.2 0.011 3.8E-07 46.4 2.9 22 23-44 131-152 (440)
498 4b4t_L 26S protease subunit RP 95.2 0.013 4.6E-07 46.0 3.4 23 22-44 215-237 (437)
499 3kl4_A SRP54, signal recogniti 95.2 0.02 6.8E-07 45.0 4.3 23 21-43 96-118 (433)
500 2qp9_X Vacuolar protein sortin 95.2 0.012 4E-07 44.9 3.0 22 23-44 85-106 (355)
No 1
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=100.00 E-value=8.4e-35 Score=210.51 Aligned_cols=135 Identities=29% Similarity=0.508 Sum_probs=113.2
Q ss_pred cceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeee-EEEEEECCeEEEEEEEeCCCcccccccccccccCCcEE
Q 044772 19 ATKFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNF-SANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADVF 97 (159)
Q Consensus 19 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ 97 (159)
+.+.+||+|||++|||||||++||+.+.|...|.+|.+..+ .+....++..+.++||||+|++.|..++..|+++++++
T Consensus 10 P~k~~KivlvGd~~VGKTsLi~r~~~~~f~~~~~~Tig~d~~~k~~~~~~~~v~l~iwDtaGqe~~~~l~~~~~~~a~~~ 89 (216)
T 4dkx_A 10 PLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLERFRSLIPSYIRDSAAA 89 (216)
T ss_dssp ---CEEEEEECSTTSSHHHHHHHHHHSCCC----------CEEEEEECSSCEEEEEEECCSCTTTCGGGHHHHHTTCSEE
T ss_pred CCCcEEEEEECcCCcCHHHHHHHHHhCCCCCCcCCccceEEEEEEEEecceEEEEEEEECCCchhhhhHHHHHhccccEE
Confidence 45779999999999999999999999999999999998666 55677888899999999999999999999999999999
Q ss_pred EEEEeCCChhhHHhhhhhhHHHHHhhhC-CCCCEEEEeeCcccccCccccccCCCcccc
Q 044772 98 ILAFSLISRPSYENISKKKWVPELRHYA-PSVPIVLVGTKLDLRKDRQFHLDYPGAYTI 155 (159)
Q Consensus 98 i~v~d~~~~~s~~~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~r~v~~~~~~~~~~ 155 (159)
++|||++++++|..+. .|+..+.... +++|++|||||+|+.+.|+|+.++++.||.
T Consensus 90 ilv~di~~~~Sf~~i~--~~~~~i~~~~~~~~piilVgNK~Dl~~~r~V~~~e~~~~a~ 146 (216)
T 4dkx_A 90 VVVYDITNVNSFQQTT--KWIDDVRTERGSDVIIMLVGNKTDLADKRQVSIEEGERKAK 146 (216)
T ss_dssp EEEEETTCHHHHHTHH--HHHHHHHHHHTTSSEEEEEEECTTCGGGCCSCHHHHHHHHH
T ss_pred EEEeecchhHHHHHHH--HHHHHHHHhcCCCCeEEEEeeccchHhcCcccHHHHhhHHH
Confidence 9999999999999998 8999887664 689999999999999999999998887763
No 2
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=99.97 E-value=6.1e-31 Score=185.64 Aligned_cols=142 Identities=25% Similarity=0.337 Sum_probs=114.0
Q ss_pred CCCCCCCCCcceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCcccccccccc
Q 044772 10 SSSTTTTTTATKFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRLRPL 89 (159)
Q Consensus 10 ~~~~~~~~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~ 89 (159)
+.+.+........+||+++|++|||||||+++|+++.+...+.+|.+..+.....+++..+.+.+||++|++.+... ..
T Consensus 9 ~~~~~~~~~~~~~~ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~-~~ 87 (187)
T 3c5c_A 9 SGRENLYFQGPLEVNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTYSSEETVDHQPVHLRVMDTADLDTPRNC-ER 87 (187)
T ss_dssp -----------CEEEEEEECCTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC---CCCT-HH
T ss_pred chhhhHHhCCCceEEEEEECCCCCcHHHHHHHHHhCCCCcccCCCccceeeEEEEECCEEEEEEEEECCCCCcchhH-HH
Confidence 33444555667889999999999999999999999999888899998887777778888999999999999988774 67
Q ss_pred cccCCcEEEEEEeCCChhhHHhhhhhhHHHHHhhhC----CCCCEEEEeeCcccccCccccccCCCccc
Q 044772 90 SYRGADVFILAFSLISRPSYENISKKKWVPELRHYA----PSVPIVLVGTKLDLRKDRQFHLDYPGAYT 154 (159)
Q Consensus 90 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~----~~~piilv~nK~Dl~~~r~v~~~~~~~~~ 154 (159)
++.+++++++|||++++++|..+. .|+..+.... .++|++||+||+|+.+.++++.++++.++
T Consensus 88 ~~~~~~~~ilv~d~~~~~s~~~~~--~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~ 154 (187)
T 3c5c_A 88 YLNWAHAFLVVYSVDSRQSFDSSS--SYLELLALHAKETQRSIPALLLGNKLDMAQYRQVTKAEGVALA 154 (187)
T ss_dssp HHTTCSEEEEEEETTCHHHHHHHH--HHHHHHHHHHHHHCCCCCEEEEEECGGGGGGCSSCHHHHHHHH
T ss_pred HHhhCCEEEEEEECCCHHHHHHHH--HHHHHHHHHhhccCCCCCEEEEEECcchhhcCccCHHHHHHHH
Confidence 899999999999999999999998 8998888763 58999999999999988888877665543
No 3
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=99.97 E-value=1.2e-30 Score=187.97 Aligned_cols=141 Identities=33% Similarity=0.605 Sum_probs=116.8
Q ss_pred CCCCCCcceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccccccccc
Q 044772 13 TTTTTTATKFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYR 92 (159)
Q Consensus 13 ~~~~~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~ 92 (159)
..........+||+|+|++|||||||+++|+++.+...+.+|.+..+...+.+++..+.+.+||++|++.+..++..+++
T Consensus 18 ~~~~~~~~~~~ki~vvG~~~vGKSsL~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~ 97 (214)
T 3q3j_B 18 GRAPQPVVARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTACLETEEQRVELSLWDTSGSPYYDNVRPLCYS 97 (214)
T ss_dssp ---------CEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEEC--CEEEEEEEEECCSGGGTTTGGGGCT
T ss_pred ccCCCCccceEEEEEECcCCCCHHHHHHHHhcCCCCCCcCCeeeeeEEEEEEECCEEEEEEEEECCCCHhHHHHHHHHcC
Confidence 34445666789999999999999999999999999988899998888777778888899999999999999999999999
Q ss_pred CCcEEEEEEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCcccccC------------ccccccCCCccc
Q 044772 93 GADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKD------------RQFHLDYPGAYT 154 (159)
Q Consensus 93 ~~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~------------r~v~~~~~~~~~ 154 (159)
+++++|+|||++++++|..+.. .|+..+....+++|++||+||+|+.+. |.++.++++.++
T Consensus 98 ~~d~~i~v~d~~~~~s~~~~~~-~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~ 170 (214)
T 3q3j_B 98 DSDAVLLCFDISRPETVDSALK-KWRTEILDYCPSTRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIA 170 (214)
T ss_dssp TCSEEEEEEETTCTHHHHHHHT-HHHHHHHHHCTTSEEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHH
T ss_pred CCeEEEEEEECcCHHHHHHHHH-HHHHHHHHhCCCCCEEEEEEChhhccchhhhhhhcccccCccCHHHHHHHH
Confidence 9999999999999999998433 999999998889999999999999864 677766655543
No 4
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=99.97 E-value=4.7e-30 Score=180.96 Aligned_cols=151 Identities=28% Similarity=0.526 Sum_probs=119.5
Q ss_pred CCCCCCCcCCCCCCCCCCcceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeee-EEEEEECCeEEEEEEEeCCC
Q 044772 1 MTSTTASALSSSTTTTTTATKFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNF-SANVMVDGRTVNLGLWDTAG 79 (159)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g 79 (159)
|+++.....++...........+||+|+|++|||||||+++|.++.+...+.++.+..+ ...+..++..+.+.+||++|
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G 80 (189)
T 2gf9_A 1 MGSSHHHHHHSSGLVPRGSDYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAG 80 (189)
T ss_dssp -------------CCCTTCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCCCEEEEEEEEETTEEEEEEEEECCS
T ss_pred CCccccccccccCCCCcccCceeEEEEECCCCCCHHHHHHHHHcCCCCCCcCCceeEEEEEEEEEECCeEEEEEEEeCCC
Confidence 56666666665666666677889999999999999999999999998877778777665 34566788889999999999
Q ss_pred cccccccccccccCCcEEEEEEeCCChhhHHhhhhhhHHHHHhhhC-CCCCEEEEeeCcccccCccccccCCCcc
Q 044772 80 QEDYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYA-PSVPIVLVGTKLDLRKDRQFHLDYPGAY 153 (159)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~r~v~~~~~~~~ 153 (159)
++.+...+..++..++++|+|||++++.+|..+. .|+..+.... .+.|++||+||+|+.+.+.+..++++.+
T Consensus 81 ~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~--~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~ 153 (189)
T 2gf9_A 81 QERYRTITTAYYRGAMGFLLMYDIANQESFAAVQ--DWATQIKTYSWDNAQVILVGNKCDLEDERVVPAEDGRRL 153 (189)
T ss_dssp CCSSCCSGGGGGTTCSEEEEEEETTCHHHHHTHH--HHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHH
T ss_pred cHHHhhhHHHhccCCCEEEEEEECCCHHHHHHHH--HHHHHHHHhcCCCCCEEEEEECcccccccCCCHHHHHHH
Confidence 9999999999999999999999999999999988 8999888775 5899999999999988777766554443
No 5
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=99.97 E-value=4.2e-30 Score=181.59 Aligned_cols=150 Identities=29% Similarity=0.539 Sum_probs=115.9
Q ss_pred CCCCCCCcCCCCCCCCCCcceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeee-EEEEEECCeEEEEEEEeCCC
Q 044772 1 MTSTTASALSSSTTTTTTATKFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNF-SANVMVDGRTVNLGLWDTAG 79 (159)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g 79 (159)
|+++.+.++.... ........+||+|+|++|||||||+++|.++.+...+.++.+..+ ...+.+++..+.+.+||++|
T Consensus 1 ~~~~~~~~~~~~~-~~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G 79 (191)
T 2a5j_A 1 MGSSHHHHHHSSG-LVPRGSYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAG 79 (191)
T ss_dssp ---------CCCC-CCCTTCEEEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTT
T ss_pred CCccccccccccc-cccccCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCC
Confidence 5555555444333 333446789999999999999999999999998877777776655 44677788889999999999
Q ss_pred cccccccccccccCCcEEEEEEeCCChhhHHhhhhhhHHHHHhhhC-CCCCEEEEeeCcccccCccccccCCCcc
Q 044772 80 QEDYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYA-PSVPIVLVGTKLDLRKDRQFHLDYPGAY 153 (159)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~r~v~~~~~~~~ 153 (159)
++.+...+..++++++++|+|||++++.+|..+. .|+..+.... .+.|++||+||+|+.+.+.+..++++.+
T Consensus 80 ~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~--~~l~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~ 152 (191)
T 2a5j_A 80 QESFRSITRSYYRGAAGALLVYDITRRETFNHLT--SWLEDARQHSSSNMVIMLIGNKSDLESRRDVKREEGEAF 152 (191)
T ss_dssp GGGTSCCCHHHHTTCSEEEEEEETTCHHHHHTHH--HHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHH
T ss_pred chhhhhhHHHHhccCCEEEEEEECCCHHHHHHHH--HHHHHHHHhcCCCCCEEEEEECcccCCccccCHHHHHHH
Confidence 9999999999999999999999999999999988 8999888764 5899999999999988888776655544
No 6
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=99.97 E-value=3.4e-30 Score=184.62 Aligned_cols=123 Identities=37% Similarity=0.745 Sum_probs=110.2
Q ss_pred CcceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEE
Q 044772 18 TATKFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADVF 97 (159)
Q Consensus 18 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ 97 (159)
.....+||+++|++|||||||+++|.++.+...+.+|.+..+...+.+++..+.+.+||++|++.+...+..++.+++++
T Consensus 24 ~~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ 103 (205)
T 1gwn_A 24 NQNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAV 103 (205)
T ss_dssp ---CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEESSSSEEEEEEEEECCSGGGTTTGGGGCTTCSEE
T ss_pred ccceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEECCEEEEEEEEeCCCcHhhhHHHHhhccCCCEE
Confidence 34678999999999999999999999999988888888887776777788889999999999999999999999999999
Q ss_pred EEEEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCccccc
Q 044772 98 ILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRK 141 (159)
Q Consensus 98 i~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~ 141 (159)
|+|||++++.+|..+.. .|+..+....++.|++||+||+|+.+
T Consensus 104 ilv~D~~~~~s~~~~~~-~~~~~i~~~~~~~piilv~nK~Dl~~ 146 (205)
T 1gwn_A 104 LICFDISRPETLDSVLK-KWKGEIQEFCPNTKMLLVGCKSDLRT 146 (205)
T ss_dssp EEEEETTCHHHHHHHHH-THHHHHHHHCTTCEEEEEEECGGGGG
T ss_pred EEEEECCCHHHHHHHHH-HHHHHHHHHCCCCCEEEEEechhhcc
Confidence 99999999999999843 89999988888999999999999975
No 7
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=99.97 E-value=7.3e-30 Score=180.65 Aligned_cols=138 Identities=49% Similarity=0.832 Sum_probs=119.2
Q ss_pred CCCCCcceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCcccccccccccccC
Q 044772 14 TTTTTATKFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRG 93 (159)
Q Consensus 14 ~~~~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~ 93 (159)
.........+||+++|++|||||||+++|.++.+...+.+|.+..+...+..++..+.+.+||++|++.+...+..++++
T Consensus 15 ~~~~~~~~~~ki~~vG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ 94 (194)
T 3reg_A 15 GKIENGKKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFSHVMKYKNEEFILHLWDTAGQEEYDRLRPLSYAD 94 (194)
T ss_dssp ------CEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGTTTGGGGCTT
T ss_pred ccccccceeeEEEEECcCCCCHHHHHHHHhcCCCCCccCCeeeeeeEEEEEECCEEEEEEEEECCCcHHHHHHhHhhccC
Confidence 34445678899999999999999999999999998888999988888778889999999999999999999999999999
Q ss_pred CcEEEEEEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCcccccC--ccccccCCCc
Q 044772 94 ADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKD--RQFHLDYPGA 152 (159)
Q Consensus 94 ~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~--r~v~~~~~~~ 152 (159)
++++|+|||++++.+|..+.. .|+..+....+++|++||+||+|+.+. +.+..++++.
T Consensus 95 ~d~~i~v~d~~~~~s~~~~~~-~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~ 154 (194)
T 3reg_A 95 SDVVLLCFAVNNRTSFDNIST-KWEPEIKHYIDTAKTVLVGLKVDLRKDGSDDVTKQEGDD 154 (194)
T ss_dssp CSEEEEEEETTCHHHHHHHHH-THHHHHHHHCTTSEEEEEEECGGGCCTTTTCCCHHHHHH
T ss_pred CcEEEEEEECCCHHHHHHHHH-HHHHHHHHhCCCCCEEEEEEChhhccCCCCcccHHHHHH
Confidence 999999999999999999754 999999988889999999999999753 6666655443
No 8
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.97 E-value=8.4e-30 Score=180.21 Aligned_cols=125 Identities=56% Similarity=1.093 Sum_probs=113.5
Q ss_pred CCcceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCcccccccccccccCCcE
Q 044772 17 TTATKFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADV 96 (159)
Q Consensus 17 ~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ 96 (159)
......+||+++|++|||||||+++|.++.+...+.+|.+..+...+.+++..+.+.+||++|++.+...+..++.++++
T Consensus 13 ~~~~~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 92 (194)
T 2atx_A 13 GPGALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDV 92 (194)
T ss_dssp CCEEEEEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSCCCEEEEEESSSCEEEEEEECCCCSSSSTTTGGGGCTTCSE
T ss_pred CCCCceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEECCEEEEEEEEECCCCcchhHHHHHhcCCCCE
Confidence 44568899999999999999999999999998888899888777777778888999999999999999999999999999
Q ss_pred EEEEEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCcccccC
Q 044772 97 FILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKD 142 (159)
Q Consensus 97 ~i~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~ 142 (159)
+|+|||++++++|..+.. .|+..+....+++|++||+||+|+.+.
T Consensus 93 ~i~v~d~~~~~s~~~~~~-~~~~~~~~~~~~~piilv~nK~Dl~~~ 137 (194)
T 2atx_A 93 FLICFSVVNPASFQNVKE-EWVPELKEYAPNVPFLLIGTQIDLRDD 137 (194)
T ss_dssp EEEEEETTCHHHHHHHHH-THHHHHHHHSTTCCEEEEEECTTSTTC
T ss_pred EEEEEECCCHHHHHHHHH-HHHHHHHHhCCCCCEEEEEEChhhccc
Confidence 999999999999998865 799999888789999999999999764
No 9
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=99.97 E-value=1.7e-29 Score=176.54 Aligned_cols=134 Identities=30% Similarity=0.426 Sum_probs=119.0
Q ss_pred cceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEE
Q 044772 19 ATKFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADVFI 98 (159)
Q Consensus 19 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i 98 (159)
..+.+||+++|++|||||||+++|.++.+...+.++.+..+...+..++..+.+.+||++|++.+...+..+++.+++++
T Consensus 3 ~~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i 82 (181)
T 3t5g_A 3 QSKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYI 82 (181)
T ss_dssp CEEEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCTTCCCCGGGTTTCSEEE
T ss_pred CCceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCCccccEEEEEEECCEEEEEEEEeCCCchhhhHHHHHHHhcCCEEE
Confidence 45789999999999999999999999999888899988888777888999999999999999999999999999999999
Q ss_pred EEEeCCChhhHHhhhhhhHHHHHhhhC--CCCCEEEEeeCcccccCccccccCCCccc
Q 044772 99 LAFSLISRPSYENISKKKWVPELRHYA--PSVPIVLVGTKLDLRKDRQFHLDYPGAYT 154 (159)
Q Consensus 99 ~v~d~~~~~s~~~~~~~~~~~~i~~~~--~~~piilv~nK~Dl~~~r~v~~~~~~~~~ 154 (159)
+|||++++++|..+. .|+..+.... .++|++||+||+|+.+.+.++.++++.++
T Consensus 83 ~v~d~~~~~s~~~~~--~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~ 138 (181)
T 3t5g_A 83 LVYSVTSIKSFEVIK--VIHGKLLDMVGKVQIPIMLVGNKKDLHMERVISYEEGKALA 138 (181)
T ss_dssp EEEETTCHHHHHHHH--HHHHHHHHHC----CCEEEEEECTTCTTTCCSCHHHHHHHH
T ss_pred EEEECCCHHHHHHHH--HHHHHHHHhcCCCCCCEEEEEECccchhcceecHHHHHHHH
Confidence 999999999999998 8988887664 48999999999999988888877665543
No 10
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=99.97 E-value=1.1e-29 Score=178.55 Aligned_cols=122 Identities=38% Similarity=0.750 Sum_probs=110.3
Q ss_pred cceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEE
Q 044772 19 ATKFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADVFI 98 (159)
Q Consensus 19 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i 98 (159)
....+||+++|++|||||||+++|.++.+...+.++.+..+...+.+++..+.+.+||++|++.+...+..++.+++++|
T Consensus 4 ~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i 83 (184)
T 1m7b_A 4 QNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVL 83 (184)
T ss_dssp --CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEECSSCEEEEEEEEECCSGGGTTTGGGGCTTCSEEE
T ss_pred CceEEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEECCEEEEEEEEECCCChhhhhhHHhhcCCCcEEE
Confidence 45679999999999999999999999999888889988877777777888899999999999999999999999999999
Q ss_pred EEEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCccccc
Q 044772 99 LAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRK 141 (159)
Q Consensus 99 ~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~ 141 (159)
+|||++++.+|..+.. .|+..+....++.|++||+||+|+.+
T Consensus 84 ~v~d~~~~~s~~~~~~-~~~~~i~~~~~~~piilv~nK~Dl~~ 125 (184)
T 1m7b_A 84 ICFDISRPETLDSVLK-KWKGEIQEFCPNTKMLLVGCKSDLRT 125 (184)
T ss_dssp EEEETTCHHHHHHHHH-THHHHHHHHCTTCEEEEEEECGGGGG
T ss_pred EEEECCCHHHHHHHHH-HHHHHHHHHCCCCCEEEEEEcchhhc
Confidence 9999999999999843 89999988878999999999999975
No 11
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=99.96 E-value=5e-30 Score=182.94 Aligned_cols=136 Identities=30% Similarity=0.558 Sum_probs=109.8
Q ss_pred CCCcceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeee-EEEEEECCeEEEEEEEeCCCcccccccccccccCC
Q 044772 16 TTTATKFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNF-SANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGA 94 (159)
Q Consensus 16 ~~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~ 94 (159)
.......+||+|+|++|||||||+++|.++.+...+.+|.+..+ ...+.+++..+.+.+||++|++.+...+..+++++
T Consensus 23 ~~~~~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~ 102 (201)
T 2hup_A 23 DEQYDFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERFRTITQSYYRSA 102 (201)
T ss_dssp ---CCEEEEEEEEECTTSSHHHHHHHHHHSCC----------CEEEEEEEETTEEEEEEEECCTTCGGGHHHHHHHHTTC
T ss_pred ccccccceEEEEECcCCCCHHHHHHHHhhCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHHhhC
Confidence 34556789999999999999999999999998888888877655 45677788889999999999999999999999999
Q ss_pred cEEEEEEeCCChhhHHhhhhhhHHHHHhhhC-CCCCEEEEeeCcccccCccccccCCCcc
Q 044772 95 DVFILAFSLISRPSYENISKKKWVPELRHYA-PSVPIVLVGTKLDLRKDRQFHLDYPGAY 153 (159)
Q Consensus 95 ~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~r~v~~~~~~~~ 153 (159)
+++|+|||++++.+|..+. .|+..+.... .++|++||+||+|+.+.|.++.++++.+
T Consensus 103 d~iilv~D~~~~~s~~~~~--~~~~~i~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~ 160 (201)
T 2hup_A 103 NGAILAYDITKRSSFLSVP--HWIEDVRKYAGSNIVQLLIGNKSDLSELREVSLAEAQSL 160 (201)
T ss_dssp SEEEEEEETTBHHHHHTHH--HHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHH
T ss_pred CEEEEEEECCCHHHHHHHH--HHHHHHHHhcCCCCCEEEEEECCccccccccCHHHHHHH
Confidence 9999999999999999988 8999988776 6899999999999998888876655544
No 12
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=99.96 E-value=1.7e-29 Score=179.47 Aligned_cols=128 Identities=55% Similarity=0.988 Sum_probs=103.7
Q ss_pred CCCCCcceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCcccccccccccccC
Q 044772 14 TTTTTATKFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRG 93 (159)
Q Consensus 14 ~~~~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~ 93 (159)
.........+||+++|++|||||||+++|.++.+...+.+|.+..+...+..++..+.+.+||++|++.+...+..++.+
T Consensus 12 ~~~~~~~~~~ki~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ 91 (201)
T 2q3h_A 12 RAGGAEGRGVKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNFSAVVSVDGRPVRLQLCDTAGQDEFDKLRPLCYTN 91 (201)
T ss_dssp --------CEEEEEECSTTSSHHHHHHHHHC--------CCSSEEEEEEEEETTEEEEEEEEECCCSTTCSSSGGGGGTT
T ss_pred ccCCCCCcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEECCEEEEEEEEECCCCHHHHHHhHhhcCC
Confidence 33445678899999999999999999999999988888888887777777888888999999999999999999999999
Q ss_pred CcEEEEEEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCcccccC
Q 044772 94 ADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKD 142 (159)
Q Consensus 94 ~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~ 142 (159)
++++|+|||++++.+|..+.. .|+..+....+++|++||+||+|+...
T Consensus 92 ~~~~i~v~d~~~~~s~~~~~~-~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 139 (201)
T 2q3h_A 92 TDIFLLCFSVVSPSSFQNVSE-KWVPEIRCHCPKAPIILVGTQSDLRED 139 (201)
T ss_dssp CSEEEEEEETTCHHHHHHHHH-THHHHHHHHCSSSCEEEEEECGGGGGC
T ss_pred CcEEEEEEECCCHHHHHHHHH-HHHHHHHHhCCCCCEEEEEECHhhhhc
Confidence 999999999999999999865 799999888789999999999999763
No 13
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=99.96 E-value=4.2e-29 Score=177.96 Aligned_cols=123 Identities=59% Similarity=1.028 Sum_probs=112.0
Q ss_pred cceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEE
Q 044772 19 ATKFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADVFI 98 (159)
Q Consensus 19 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i 98 (159)
....+||+++|++|||||||+++|.++.+...+.++.+..+...+..++..+.+.+||++|++.+...+..+++++++++
T Consensus 22 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i 101 (201)
T 2gco_A 22 AAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVIL 101 (201)
T ss_dssp CCEEEEEEEEESTTSSHHHHHHHHHHSSCCSSCCCSSCCCCEEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEE
T ss_pred cccceEEEEECCCCCCHHHHHHHHHhCcCCcccCCcccceEEEEEEECCEEEEEEEEECCCchhHHHHHHHhcCCCCEEE
Confidence 45779999999999999999999999999888888888877667778888899999999999999999999999999999
Q ss_pred EEEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCcccccC
Q 044772 99 LAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKD 142 (159)
Q Consensus 99 ~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~ 142 (159)
+|||++++++|..+.. .|+..+....++.|++||+||+|+.+.
T Consensus 102 ~v~d~~~~~s~~~~~~-~~~~~~~~~~~~~piilv~nK~Dl~~~ 144 (201)
T 2gco_A 102 MCFSIDSPDSLENIPE-KWTPEVKHFCPNVPIILVGNKKDLRQD 144 (201)
T ss_dssp EEEETTCHHHHHHHHH-THHHHHHHHSTTCCEEEEEECGGGTTC
T ss_pred EEEECCCHHHHHHHHH-HHHHHHHHhCCCCCEEEEEecHHhhcC
Confidence 9999999999999854 899998888788999999999999765
No 14
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=99.96 E-value=1.4e-29 Score=177.27 Aligned_cols=134 Identities=30% Similarity=0.486 Sum_probs=119.8
Q ss_pred CcceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEE
Q 044772 18 TATKFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADVF 97 (159)
Q Consensus 18 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ 97 (159)
.....+||+++|++|||||||+++|.++.+...+.++.+..+......++..+.+.+||++|++.+...+..++++++++
T Consensus 14 ~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ 93 (183)
T 3kkq_A 14 ENLPTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDGF 93 (183)
T ss_dssp CCCCEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCSCGGGCSSHHHHHHHCSEE
T ss_pred cCCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceeEEEEEeCCcEEEEEEEECCCchhhHHHHHHHHhcCCEE
Confidence 45678999999999999999999999999988888998888877788899999999999999999999999999999999
Q ss_pred EEEEeCCChhhHHhhhhhhHHHHHhhhC--CCCCEEEEeeCcccccCccccccCCCcc
Q 044772 98 ILAFSLISRPSYENISKKKWVPELRHYA--PSVPIVLVGTKLDLRKDRQFHLDYPGAY 153 (159)
Q Consensus 98 i~v~d~~~~~s~~~~~~~~~~~~i~~~~--~~~piilv~nK~Dl~~~r~v~~~~~~~~ 153 (159)
++|||++++++|..+. .|+..+.... .++|+++|+||+|+.+.+.++.++++.+
T Consensus 94 i~v~d~~~~~s~~~~~--~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~ 149 (183)
T 3kkq_A 94 LIVYSVTDKASFEHVD--RFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEM 149 (183)
T ss_dssp EEEEETTCHHHHHTHH--HHHHHHHHHHTSSCCCEEEEEECTTCSTTCCSCHHHHHHH
T ss_pred EEEEECCCHHHHHHHH--HHHHHHHHhcCCCCCcEEEEEECCCchhccCcCHHHHHHH
Confidence 9999999999999998 8888886643 5899999999999998888887766554
No 15
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.96 E-value=1.9e-29 Score=180.27 Aligned_cols=135 Identities=32% Similarity=0.599 Sum_probs=117.8
Q ss_pred CCcceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeee-EEEEEECCeEEEEEEEeCCCcccccccccccccCCc
Q 044772 17 TTATKFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNF-SANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGAD 95 (159)
Q Consensus 17 ~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~ 95 (159)
......+||+++|++|||||||+++|+++.+...+.++.+..+ ...+.+++..+.+.+||++|++.+...+..++++++
T Consensus 21 ~~~~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d 100 (201)
T 2ew1_A 21 EDYDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSAN 100 (201)
T ss_dssp -CCSEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHGGGSTTCS
T ss_pred cccccceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHHhcCC
Confidence 3456789999999999999999999999998888888877655 446778888899999999999999999999999999
Q ss_pred EEEEEEeCCChhhHHhhhhhhHHHHHhhhC-CCCCEEEEeeCcccccCccccccCCCcc
Q 044772 96 VFILAFSLISRPSYENISKKKWVPELRHYA-PSVPIVLVGTKLDLRKDRQFHLDYPGAY 153 (159)
Q Consensus 96 ~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~r~v~~~~~~~~ 153 (159)
++|+|||++++.+|..+. .|+..+.... .++|++||+||+|+.+.++++.++++.+
T Consensus 101 ~~i~v~D~~~~~s~~~~~--~~~~~i~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~ 157 (201)
T 2ew1_A 101 ALILTYDITCEESFRCLP--EWLREIEQYASNKVITVLVGNKIDLAERREVSQQRAEEF 157 (201)
T ss_dssp EEEEEEETTCHHHHHTHH--HHHHHHHHHSCTTCEEEEEEECGGGGGGCSSCHHHHHHH
T ss_pred EEEEEEECCCHHHHHHHH--HHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHH
Confidence 999999999999999988 8999888775 5799999999999988888876665544
No 16
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=99.96 E-value=8.7e-30 Score=178.30 Aligned_cols=135 Identities=30% Similarity=0.551 Sum_probs=116.0
Q ss_pred CCCcceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCcccccccccccccCCc
Q 044772 16 TTTATKFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGAD 95 (159)
Q Consensus 16 ~~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~ 95 (159)
.......+||+++|++|||||||+++|.++.+...+.++.+..+...+..++..+.+.+||++|++.+...+..++..++
T Consensus 12 ~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d 91 (187)
T 2a9k_A 12 SQNSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGE 91 (187)
T ss_dssp -----CEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCS
T ss_pred CCCCCCceEEEEECCCCCCHHHHHHHHhhCCCCCcCCCccceEEEEEEEECCEEEEEEEEECCCCcccHHHHHHHhccCC
Confidence 33445789999999999999999999999998888888888877777788888899999999999999999999999999
Q ss_pred EEEEEEeCCChhhHHhhhhhhHHHHHhhhCC--CCCEEEEeeCcccccCccccccCCCc
Q 044772 96 VFILAFSLISRPSYENISKKKWVPELRHYAP--SVPIVLVGTKLDLRKDRQFHLDYPGA 152 (159)
Q Consensus 96 ~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~~--~~piilv~nK~Dl~~~r~v~~~~~~~ 152 (159)
++++|||++++++|..+. .|+..+..... ++|++||+||+|+.+.+.+..++.+.
T Consensus 92 ~~i~v~d~~~~~s~~~~~--~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~ 148 (187)
T 2a9k_A 92 GFLCVFSITEMESFAATA--DFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKN 148 (187)
T ss_dssp EEEEEEETTCHHHHHHHH--HHHHHHHHHHCCTTCCEEEEEECGGGGGGCCSCHHHHHH
T ss_pred EEEEEEECcCHHHHHHHH--HHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHH
Confidence 999999999999999988 89888887654 89999999999998877776655443
No 17
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=99.96 E-value=1.7e-29 Score=178.01 Aligned_cols=135 Identities=21% Similarity=0.308 Sum_probs=111.4
Q ss_pred CCCCCCCcceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCcccccccccccc
Q 044772 12 STTTTTTATKFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRLRPLSY 91 (159)
Q Consensus 12 ~~~~~~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~ 91 (159)
..++.+...+.+||+++|++|||||||+++|+++.+...+.++ ...+...+.+++..+.+.+||++|++.+. ++
T Consensus 10 ~~~~~~~~~~~~ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t-~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~-----~~ 83 (184)
T 3ihw_A 10 GRENLYFQGPELKVGIVGNLSSGKSALVHRYLTGTYVQEESPE-GGRFKKEIVVDGQSYLLLIRDEGGPPELQ-----FA 83 (184)
T ss_dssp ------CCCCEEEEEEECCTTSCHHHHHHHHHHSSCCCCCCTT-CEEEEEEEEETTEEEEEEEEECSSSCCHH-----HH
T ss_pred CCCCCCCCCCeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCC-cceEEEEEEECCEEEEEEEEECCCChhhh-----ee
Confidence 3444456678899999999999999999999999998888887 44556778889999999999999998776 77
Q ss_pred cCCcEEEEEEeCCChhhHHhhhhhhHHHHHhhhC--CCCCEEEEeeCcccc--cCccccccCCCccc
Q 044772 92 RGADVFILAFSLISRPSYENISKKKWVPELRHYA--PSVPIVLVGTKLDLR--KDRQFHLDYPGAYT 154 (159)
Q Consensus 92 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~--~~~piilv~nK~Dl~--~~r~v~~~~~~~~~ 154 (159)
.+++++++|||++++.+|..+. .|+..+.... .++|++||+||+|+. ..+.++.++++.++
T Consensus 84 ~~~~~~i~v~d~~~~~s~~~~~--~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~ 148 (184)
T 3ihw_A 84 AWVDAVVFVFSLEDEISFQTVY--NYFLRLCSFRNASEVPMVLVGTQDAISAANPRVIDDSRARKLS 148 (184)
T ss_dssp HHCSEEEEEEETTCHHHHHHHH--HHHHHHHTTSCGGGSCEEEEEECTTCBTTBCCCSCHHHHHHHH
T ss_pred cCCCEEEEEEECcCHHHHHHHH--HHHHHHHHhcCCCCCCEEEEEECcccccccccccCHHHHHHHH
Confidence 8899999999999999999998 8999998775 589999999999994 56777766555443
No 18
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=99.96 E-value=2.3e-29 Score=180.38 Aligned_cols=127 Identities=79% Similarity=1.347 Sum_probs=113.3
Q ss_pred CcceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEE
Q 044772 18 TATKFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADVF 97 (159)
Q Consensus 18 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ 97 (159)
.....+||+++|++|+|||||+++|.++.+...+.+|.+..+...+.+++..+.+.+||++|++.+...+..++.+++++
T Consensus 5 ~~~~~~ki~i~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ 84 (212)
T 2j0v_A 5 SVSKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGQIVNLGLWDTAGQEDYSRLRPLSYRGADIF 84 (212)
T ss_dssp SCCCEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCSSCCCEEEEEECSSCEEEEEEECCCCCCCCCC--CGGGTTCSEE
T ss_pred CcCceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceeEEEEEEECCEEEEEEEEECCCcHHHHHHHHhhccCCCEE
Confidence 34577999999999999999999999999988888898887777777888889999999999999999999999999999
Q ss_pred EEEEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCcccccCccc
Q 044772 98 ILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKDRQF 145 (159)
Q Consensus 98 i~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~r~v 145 (159)
|+|||++++++|..+.. .|+..+..+.++.|++||+||+|+.+.+.+
T Consensus 85 ilv~d~~~~~s~~~~~~-~~~~~~~~~~~~~piilv~nK~Dl~~~~~~ 131 (212)
T 2j0v_A 85 VLAFSLISKASYENVLK-KWMPELRRFAPNVPIVLVGTKLDLRDDKGY 131 (212)
T ss_dssp EEEEETTCHHHHHHHHH-THHHHHHHHCTTCCEEEEEECHHHHTCHHH
T ss_pred EEEEECCCHHHHHHHHH-HHHHHHHHhCCCCCEEEEEeCHHhhhCccc
Confidence 99999999999998865 899999888789999999999999887764
No 19
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=99.96 E-value=2e-29 Score=179.55 Aligned_cols=138 Identities=29% Similarity=0.391 Sum_probs=112.5
Q ss_pred CCCCCcceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCcccccccccccccC
Q 044772 14 TTTTTATKFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRG 93 (159)
Q Consensus 14 ~~~~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~ 93 (159)
.+.++..+.+||+|+|++|||||||+++|.++.+...+.++.+..+......++..+.+.+||++|++.+...+..++++
T Consensus 16 ~q~~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ 95 (201)
T 3oes_A 16 FQGMPLVRYRKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTYSKIVTLGKDEFHLHLVDTAGQDEYSILPYSFIIG 95 (201)
T ss_dssp -------CEEEEEEEESTTSSHHHHHHHHHHSCCCSCCCCCSEEEEEEEEC----CEEEEEEEECCCCTTCCCCGGGTTT
T ss_pred CCCCCCCCcEEEEEECCCCcCHHHHHHHHHhCCCCCCCCCccceEEEEEEEECCEEEEEEEEECCCccchHHHHHHHHhc
Confidence 44456678899999999999999999999999998888888888776666677777889999999999999999999999
Q ss_pred CcEEEEEEeCCChhhHHhhhhhhHHHHHhhhC--CCCCEEEEeeCcccccCccccccCCCcc
Q 044772 94 ADVFILAFSLISRPSYENISKKKWVPELRHYA--PSVPIVLVGTKLDLRKDRQFHLDYPGAY 153 (159)
Q Consensus 94 ~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~--~~~piilv~nK~Dl~~~r~v~~~~~~~~ 153 (159)
++++++|||++++.+|..+. .|+..+.... .++|++||+||+|+...+.++.++++.+
T Consensus 96 ~d~~i~v~d~~~~~s~~~~~--~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~ 155 (201)
T 3oes_A 96 VHGYVLVYSVTSLHSFQVIE--SLYQKLHEGHGKTRVPVVLVGNKADLSPEREVQAVEGKKL 155 (201)
T ss_dssp CCEEEEEEETTCHHHHHHHH--HHHHHHHC-----CCCEEEEEECTTCGGGCCSCHHHHHHH
T ss_pred CCEEEEEEeCCCHHHHHHHH--HHHHHHHHhcCCCCCCEEEEEECccCccccccCHHHHHHH
Confidence 99999999999999999998 8999888764 4789999999999998888876655443
No 20
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=99.96 E-value=9.9e-29 Score=172.06 Aligned_cols=132 Identities=30% Similarity=0.550 Sum_probs=114.4
Q ss_pred cceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeee-EEEEEECCeEEEEEEEeCCCcccccccccccccCCcEE
Q 044772 19 ATKFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNF-SANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADVF 97 (159)
Q Consensus 19 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ 97 (159)
....+||+++|++|||||||+++|.++.+...+.++.+..+ ...+..++..+.+.+||++|++.+...+..++.+++++
T Consensus 6 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ 85 (181)
T 3tw8_B 6 YDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTITSTYYRGTHGV 85 (181)
T ss_dssp CCEEEEEEEECCTTSCHHHHHHHHCSCC---CCTTTBSEEEEEEEEEETTEEEEEEEEEETTGGGCSSCCGGGGTTCSEE
T ss_pred cCcceEEEEECCCCCCHHHHHHHHhcCCCCCccCCCceeEEEEEEEEECCEEEEEEEEcCCCchhhhhhHHHHhccCCEE
Confidence 45789999999999999999999999998877777776655 45677888889999999999999999999999999999
Q ss_pred EEEEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCcccccCccccccCCCc
Q 044772 98 ILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKDRQFHLDYPGA 152 (159)
Q Consensus 98 i~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~r~v~~~~~~~ 152 (159)
++|||++++.+|..+. .|+..+....++.|++||+||+|+.+.+.+..+++..
T Consensus 86 i~v~d~~~~~s~~~~~--~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~ 138 (181)
T 3tw8_B 86 IVVYDVTSAESFVNVK--RWLHEINQNCDDVCRILVGNKNDDPERKVVETEDAYK 138 (181)
T ss_dssp EEEEETTCHHHHHHHH--HHHHHHHHHCTTSEEEEEEECTTCGGGCCSCHHHHHH
T ss_pred EEEEECCCHHHHHHHH--HHHHHHHHhCCCCCEEEEEECCCCchhcccCHHHHHH
Confidence 9999999999999988 8999999888899999999999998888777554433
No 21
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=99.96 E-value=4.3e-29 Score=177.68 Aligned_cols=134 Identities=31% Similarity=0.547 Sum_probs=118.4
Q ss_pred CcceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEE
Q 044772 18 TATKFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADVF 97 (159)
Q Consensus 18 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ 97 (159)
.....+||+|+|++|||||||+++|.++.+...+.++.+..+...+.+++..+.+.+||++|++.+...+..++..++++
T Consensus 10 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~ 89 (206)
T 2bov_A 10 NSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGF 89 (206)
T ss_dssp -CCCEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEE
T ss_pred CCCceEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEECCEEEEEEEEcCCChhhhHHHHHHHHhhCCEE
Confidence 44567999999999999999999999999888888888887777778888889999999999999999999999999999
Q ss_pred EEEEeCCChhhHHhhhhhhHHHHHhhhCC--CCCEEEEeeCcccccCccccccCCCcc
Q 044772 98 ILAFSLISRPSYENISKKKWVPELRHYAP--SVPIVLVGTKLDLRKDRQFHLDYPGAY 153 (159)
Q Consensus 98 i~v~d~~~~~s~~~~~~~~~~~~i~~~~~--~~piilv~nK~Dl~~~r~v~~~~~~~~ 153 (159)
++|||++++++|..+. .|+..+..... ++|++||+||+|+.+.++++.+++..+
T Consensus 90 i~v~d~~~~~s~~~~~--~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~ 145 (206)
T 2bov_A 90 LCVFSITEMESFAATA--DFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNR 145 (206)
T ss_dssp EEEEETTCHHHHHHHH--HHHHHHHHHTTCSCCCEEEEEECTTCGGGCCSCHHHHHHH
T ss_pred EEEEECCCHHHHHHHH--HHHHHHHHhcCCCCCCEEEEEeccCccccccccHHHHHHH
Confidence 9999999999999988 89998888764 899999999999988887776655443
No 22
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=99.96 E-value=6.7e-29 Score=175.01 Aligned_cols=134 Identities=28% Similarity=0.591 Sum_probs=114.7
Q ss_pred CcceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeee-EEEEEECCeEEEEEEEeCCCccccc-ccccccccCCc
Q 044772 18 TATKFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNF-SANVMVDGRTVNLGLWDTAGQEDYN-RLRPLSYRGAD 95 (159)
Q Consensus 18 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~-~~~~~~~~~~~ 95 (159)
...+.+||+|+|++|||||||+++|+++.+...+.++.+..+ ...+.+++..+.+.+||++|++.+. .++..++++++
T Consensus 16 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~d 95 (189)
T 1z06_A 16 SRSRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVH 95 (189)
T ss_dssp ---CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHTTTHHHHHTTCC
T ss_pred CCCceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCchhhhhhhhHHHhcCCC
Confidence 445789999999999999999999999998877778777655 4566778888999999999999888 78889999999
Q ss_pred EEEEEEeCCChhhHHhhhhhhHHHHHhhhC--CCCCEEEEeeCcccccCccccccCCCcc
Q 044772 96 VFILAFSLISRPSYENISKKKWVPELRHYA--PSVPIVLVGTKLDLRKDRQFHLDYPGAY 153 (159)
Q Consensus 96 ~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~--~~~piilv~nK~Dl~~~r~v~~~~~~~~ 153 (159)
++|+|||++++.+|..+. .|+..+.... .+.|++||+||+|+.+.++++.++++.+
T Consensus 96 ~iilv~D~~~~~s~~~~~--~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~ 153 (189)
T 1z06_A 96 AVVFVYDMTNMASFHSLP--AWIEECKQHLLANDIPRILVGNKCDLRSAIQVPTDLAQKF 153 (189)
T ss_dssp EEEEEEETTCHHHHHTHH--HHHHHHHHHCCCSCCCEEEEEECTTCGGGCCSCHHHHHHH
T ss_pred EEEEEEECcCHHHHHHHH--HHHHHHHHhcCCCCCCEEEEEECccccccceeCHHHHHHH
Confidence 999999999999999988 8999888774 5899999999999988888776655443
No 23
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=99.96 E-value=1.5e-28 Score=172.06 Aligned_cols=122 Identities=70% Similarity=1.213 Sum_probs=111.2
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEE
Q 044772 20 TKFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL 99 (159)
Q Consensus 20 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~ 99 (159)
.+.+||+++|++|||||||+++|.++.+...+.++.+..+.....+++..+.+.+||++|++.+...+..++..++++++
T Consensus 3 ~~~~~i~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 82 (186)
T 1mh1_A 3 PQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSLI 82 (186)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSCCEEEEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEEE
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHcCCCCCCcCCcccceeEEEEEECCEEEEEEEEECCCCHhHHHHHHHhccCCcEEEE
Confidence 35799999999999999999999999998888888887777777888999999999999999999999999999999999
Q ss_pred EEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCcccccC
Q 044772 100 AFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKD 142 (159)
Q Consensus 100 v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~ 142 (159)
|||++++.+|..+.. .|+..+....++.|+++|+||+|+.+.
T Consensus 83 v~d~~~~~s~~~~~~-~~~~~~~~~~~~~piilv~nK~Dl~~~ 124 (186)
T 1mh1_A 83 CFSLVSPASFENVRA-KWYPEVRHHCPNTPIILVGTKLDLRDD 124 (186)
T ss_dssp EEETTCHHHHHHHHH-THHHHHHHHSTTSCEEEEEECHHHHTC
T ss_pred EEECCChhhHHHHHH-HHHHHHHHhCCCCCEEEEeEccccccc
Confidence 999999999998865 799998887778999999999999764
No 24
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=99.96 E-value=6.7e-29 Score=178.68 Aligned_cols=124 Identities=48% Similarity=0.928 Sum_probs=92.1
Q ss_pred cceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEE
Q 044772 19 ATKFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADVFI 98 (159)
Q Consensus 19 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i 98 (159)
..+.+||+++|++|||||||+++|.++.+...+.++....+...+.+++..+.+.+||++|++.+...+..++.++++++
T Consensus 31 ~~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i 110 (214)
T 2j1l_A 31 GVRSVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERYMVNLQVKGKPVHLHIWDTAGQDDYDRLRPLFYPDASVLL 110 (214)
T ss_dssp -CCEEEEEEEECTTSSHHHHHHHHHC-------CCCCCEEEEEEEEETTEEEEEEEEEC---------------CEEEEE
T ss_pred CcceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEECCEEEEEEEEECCCchhhhHHHHHHhccCCEEE
Confidence 35679999999999999999999999998888888888777777788898899999999999999999999999999999
Q ss_pred EEEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCcccccCc
Q 044772 99 LAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKDR 143 (159)
Q Consensus 99 ~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~r 143 (159)
+|||++++.+|..+.. .|+..+....+++|++||+||+|+...+
T Consensus 111 ~v~d~~~~~s~~~~~~-~~~~~~~~~~~~~piilv~nK~Dl~~~~ 154 (214)
T 2j1l_A 111 LCFDVTSPNSFDNIFN-RWYPEVNHFCKKVPIIVVGCKTDLRKDK 154 (214)
T ss_dssp EEEETTCHHHHHHHHH-THHHHHHHHCSSCCEEEEEECGGGGSCH
T ss_pred EEEECcCHHHHHHHHH-HHHHHHHHhCCCCCEEEEEEChhhhccc
Confidence 9999999999999865 8999998888899999999999998764
No 25
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=99.96 E-value=6.4e-29 Score=175.75 Aligned_cols=142 Identities=27% Similarity=0.519 Sum_probs=115.8
Q ss_pred CCCCCCCCCcceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeee-EEEEEECCeEEEEEEEeCCCccccccccc
Q 044772 10 SSSTTTTTTATKFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNF-SANVMVDGRTVNLGLWDTAGQEDYNRLRP 88 (159)
Q Consensus 10 ~~~~~~~~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~ 88 (159)
+++........+.+||+|+|++|+|||||+++|+++.+...+.++.+..+ ...+..++..+.+.+||++|++.+...+.
T Consensus 11 ~~~~~~~~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~ 90 (192)
T 2fg5_A 11 SSGLVPRGSAIRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQERFHSLAP 90 (192)
T ss_dssp ----------CEEEEEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSSEEEEEEEEECSSSEEEEEEEEECCSGGGGGGTH
T ss_pred ccccccccccCCceEEEEECcCCCCHHHHHHHHhcCCCCCCcCCCcceeEEEEEEEeCCEEEEEEEEcCCCchhhHhhhH
Confidence 44455555667889999999999999999999999998877788877666 34566677888999999999999999999
Q ss_pred ccccCCcEEEEEEeCCChhhHHhhhhhhHHHHHhhhC-CCCCEEEEeeCcccccCccccccCCCcc
Q 044772 89 LSYRGADVFILAFSLISRPSYENISKKKWVPELRHYA-PSVPIVLVGTKLDLRKDRQFHLDYPGAY 153 (159)
Q Consensus 89 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~r~v~~~~~~~~ 153 (159)
.+++.++++|+|||++++.+|..+. .|+..+.... .++|+++|+||+|+.+.+.++.++.+.+
T Consensus 91 ~~~~~~d~iilV~d~~~~~s~~~~~--~~~~~i~~~~~~~~piiiv~NK~Dl~~~~~v~~~~~~~~ 154 (192)
T 2fg5_A 91 MYYRGSAAAVIVYDITKQDSFYTLK--KWVKELKEHGPENIVMAIAGNKCDLSDIREVPLKDAKEY 154 (192)
T ss_dssp HHHTTCSEEEEEEETTCTHHHHHHH--HHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHH
T ss_pred HhhccCCEEEEEEeCCCHHHHHHHH--HHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHH
Confidence 9999999999999999999999997 8999888776 5899999999999988777776655544
No 26
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=99.96 E-value=4.2e-29 Score=171.87 Aligned_cols=130 Identities=27% Similarity=0.496 Sum_probs=114.7
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEEE
Q 044772 21 KFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADVFILA 100 (159)
Q Consensus 21 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v 100 (159)
+.+||+++|++|||||||+++|.++.+...+.++.+..+.....+++..+.+.+||++|++.+...+..++.+++++++|
T Consensus 2 ~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v 81 (167)
T 1c1y_A 2 REYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALV 81 (167)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCSEEEEEEEEESSSCEEEEEEEEECSSCSSTTHHHHHHHHCSEEEEE
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccceEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEEE
Confidence 46899999999999999999999999988888888887777777788889999999999999999999999999999999
Q ss_pred EeCCChhhHHhhhhhhHHHHHhhh--CCCCCEEEEeeCcccccCccccccCCCc
Q 044772 101 FSLISRPSYENISKKKWVPELRHY--APSVPIVLVGTKLDLRKDRQFHLDYPGA 152 (159)
Q Consensus 101 ~d~~~~~s~~~~~~~~~~~~i~~~--~~~~piilv~nK~Dl~~~r~v~~~~~~~ 152 (159)
||++++.+|..+. .|+..+... ..+.|+++|+||+|+.+.+.++.++.+.
T Consensus 82 ~d~~~~~s~~~~~--~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~ 133 (167)
T 1c1y_A 82 YSITAQSTFNDLQ--DLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQN 133 (167)
T ss_dssp EETTCHHHHHTHH--HHHHHHHHHHCCSCCCEEEEEECTTCGGGCCSCHHHHHH
T ss_pred EECCCHHHHHHHH--HHHHHHHHhhCcCCCcEEEEEECccccccccCCHHHHHH
Confidence 9999999999988 888887765 3589999999999998888776655443
No 27
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=99.96 E-value=3.9e-29 Score=175.00 Aligned_cols=133 Identities=28% Similarity=0.602 Sum_probs=90.7
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeee-EEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEE
Q 044772 20 TKFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNF-SANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADVFI 98 (159)
Q Consensus 20 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i 98 (159)
...+||+++|++|||||||+++|.++.+...+.++.+..+ ...+.+++..+.+.+||++|++.+...+..++++++++|
T Consensus 6 ~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 85 (183)
T 2fu5_C 6 DYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIM 85 (183)
T ss_dssp SEEEEEEEECCCCC----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC---------CCTTTTTCSEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEEECCEEEEEEEEcCCCChhhhhhHHHHHhcCCEEE
Confidence 4679999999999999999999999888877788877665 346677888899999999999999999999999999999
Q ss_pred EEEeCCChhhHHhhhhhhHHHHHhhhC-CCCCEEEEeeCcccccCccccccCCCccc
Q 044772 99 LAFSLISRPSYENISKKKWVPELRHYA-PSVPIVLVGTKLDLRKDRQFHLDYPGAYT 154 (159)
Q Consensus 99 ~v~d~~~~~s~~~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~r~v~~~~~~~~~ 154 (159)
+|||++++.+|..+. .|+..+.... .++|++||+||+|+.+.+.++.++++.++
T Consensus 86 ~v~d~~~~~s~~~~~--~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~ 140 (183)
T 2fu5_C 86 LVYDITNEKSFDNIR--NWIRNIEEHASADVEKMILGNKCDVNDKRQVSKERGEKLA 140 (183)
T ss_dssp EEEETTCHHHHHHHH--HHHHHHHHHSCTTCEEEEEEEC--CCSCCCSCHHHHHHHH
T ss_pred EEEECcCHHHHHHHH--HHHHHHHHhcCCCCCEEEEEECccCCccCcCCHHHHHHHH
Confidence 999999999999988 8999888764 58999999999999988888766655443
No 28
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=99.96 E-value=2.3e-29 Score=178.16 Aligned_cols=135 Identities=30% Similarity=0.561 Sum_probs=109.3
Q ss_pred CCcceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeee-EEEEEECCeEEEEEEEeCCCcccccccccccccCCc
Q 044772 17 TTATKFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNF-SANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGAD 95 (159)
Q Consensus 17 ~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~ 95 (159)
.+....+||+|+|++|||||||+++|.++.+...+.++.+..+ ...+.+++..+.+.+||++|++.+...+..++.+++
T Consensus 21 ~~~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d 100 (192)
T 2il1_A 21 RPADFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAK 100 (192)
T ss_dssp -CCSEEEEEEEECSTTSSHHHHHHHHCC--------CCTTEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHHHHHHCS
T ss_pred cccCCceEEEEECCCCCCHHHHHHHHhcCCCCcCCCCccceeEEEEEEEECCeEEEEEEEeCCCcHHHHHHHHHHhcCCC
Confidence 3456789999999999999999999999988777777776554 456677888899999999999999999999999999
Q ss_pred EEEEEEeCCChhhHHhhhhhhHHHHHhhhC-CCCCEEEEeeCcccccCccccccCCCcc
Q 044772 96 VFILAFSLISRPSYENISKKKWVPELRHYA-PSVPIVLVGTKLDLRKDRQFHLDYPGAY 153 (159)
Q Consensus 96 ~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~r~v~~~~~~~~ 153 (159)
++|+|||++++.+|..+. .|+..+.... .+.|++||+||+|+.+.++++.++++.+
T Consensus 101 ~iilV~D~~~~~s~~~~~--~~~~~i~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~ 157 (192)
T 2il1_A 101 GIILVYDITKKETFDDLP--KWMKMIDKYASEDAELLLVGNKLDCETDREITRQQGEKF 157 (192)
T ss_dssp EEEEEEETTCHHHHHTHH--HHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHH
T ss_pred EEEEEEECcCHHHHHHHH--HHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHH
Confidence 999999999999999987 8998888776 4899999999999988888776554443
No 29
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=99.96 E-value=9.5e-29 Score=171.87 Aligned_cols=134 Identities=30% Similarity=0.605 Sum_probs=116.5
Q ss_pred CcceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeee-EEEEEECCeEEEEEEEeCCCcccccccccccccCCcE
Q 044772 18 TATKFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNF-SANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADV 96 (159)
Q Consensus 18 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ 96 (159)
.....+||+++|++|||||||+++|.++.+...+.++.+..+ ...+..++..+.+.+||++|++.+...+..+++++++
T Consensus 11 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 90 (179)
T 1z0f_A 11 NYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAG 90 (179)
T ss_dssp CCSEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTCHHHHHHHHTCSE
T ss_pred ccccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCChHhhhhHHHHhccCCE
Confidence 346789999999999999999999999998877788877655 4466778888999999999999999999999999999
Q ss_pred EEEEEeCCChhhHHhhhhhhHHHHHhhhC-CCCCEEEEeeCcccccCccccccCCCcc
Q 044772 97 FILAFSLISRPSYENISKKKWVPELRHYA-PSVPIVLVGTKLDLRKDRQFHLDYPGAY 153 (159)
Q Consensus 97 ~i~v~d~~~~~s~~~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~r~v~~~~~~~~ 153 (159)
+|+|||++++.++..+. .|+..+.... .+.|+++|+||+|+.+.+.++.++.+.+
T Consensus 91 ~i~v~d~~~~~s~~~~~--~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~ 146 (179)
T 1z0f_A 91 ALMVYDITRRSTYNHLS--SWLTDARNLTNPNTVIILIGNKADLEAQRDVTYEEAKQF 146 (179)
T ss_dssp EEEEEETTCHHHHHTHH--HHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHH
T ss_pred EEEEEeCcCHHHHHHHH--HHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHH
Confidence 99999999999999988 8998888776 6899999999999988777766555443
No 30
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=99.96 E-value=9.9e-29 Score=174.53 Aligned_cols=136 Identities=32% Similarity=0.524 Sum_probs=116.5
Q ss_pred CCCcceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeee-EEEEEECCeEEEEEEEeCCCcccccccccccccCC
Q 044772 16 TTTATKFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNF-SANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGA 94 (159)
Q Consensus 16 ~~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~ 94 (159)
.......+||+|+|++|||||||+++|.++.+...+.++.+..+ ...+..++..+.+.+||++|++.+...+..++.++
T Consensus 19 ~~~~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~ 98 (193)
T 2oil_A 19 SEDYNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAITSAYYRGA 98 (193)
T ss_dssp -CCCSEEEEEEEESSTTSSHHHHHHHHHHSCCCSSCCCCSSEEEEEEEEEETTEEEEEEEEEESCCCTTCTTHHHHHTTC
T ss_pred ccccCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhccC
Confidence 34567789999999999999999999999998877777776655 44666788889999999999999999999999999
Q ss_pred cEEEEEEeCCChhhHHhhhhhhHHHHHhhhC-CCCCEEEEeeCcccccCccccccCCCcc
Q 044772 95 DVFILAFSLISRPSYENISKKKWVPELRHYA-PSVPIVLVGTKLDLRKDRQFHLDYPGAY 153 (159)
Q Consensus 95 ~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~r~v~~~~~~~~ 153 (159)
+++|+|||++++.+|..+. .|+..+.... .+.|++||+||+|+...+.+..++++.+
T Consensus 99 d~vi~v~D~~~~~s~~~~~--~~l~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~ 156 (193)
T 2oil_A 99 VGALLVFDLTKHQTYAVVE--RWLKELYDHAEATIVVMLVGNKSDLSQAREVPTEEARMF 156 (193)
T ss_dssp CEEEEEEETTCHHHHHTHH--HHHHHHHTTSCTTCEEEEEEECGGGGGGCCSCHHHHHHH
T ss_pred CEEEEEEECCCHHHHHHHH--HHHHHHHHhcCCCCeEEEEEECCCcccccccCHHHHHHH
Confidence 9999999999999999888 8998887765 5899999999999988777766555443
No 31
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=99.96 E-value=1.3e-28 Score=169.64 Aligned_cols=131 Identities=35% Similarity=0.576 Sum_probs=114.3
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeee-EEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEE
Q 044772 20 TKFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNF-SANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADVFI 98 (159)
Q Consensus 20 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i 98 (159)
...+||+++|++|||||||+++|.++.+...+.++.+..+ ...+..++..+.+.+||++|++.+...+..+++.+++++
T Consensus 3 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 82 (168)
T 1z2a_A 3 EVAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACV 82 (168)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCCHHHHTTCCEEE
T ss_pred ceeEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceEEEEEEEEEEECCEEEEEEEEcCCCcHhHHHHHHHHhcCCCEEE
Confidence 4679999999999999999999999998888888877555 456677888899999999999999999999999999999
Q ss_pred EEEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCcccccCccccccCCCc
Q 044772 99 LAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKDRQFHLDYPGA 152 (159)
Q Consensus 99 ~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~r~v~~~~~~~ 152 (159)
+|||++++.++..+. .|+..+.....+.|+++|+||+|+.+.+.++.++.+.
T Consensus 83 ~v~d~~~~~s~~~~~--~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~ 134 (168)
T 1z2a_A 83 LVFSTTDRESFEAIS--SWREKVVAEVGDIPTALVQNKIDLLDDSCIKNEEAEG 134 (168)
T ss_dssp EEEETTCHHHHHTHH--HHHHHHHHHHCSCCEEEEEECGGGGGGCSSCHHHHHH
T ss_pred EEEECcCHHHHHHHH--HHHHHHHHhCCCCCEEEEEECcccCcccccCHHHHHH
Confidence 999999999999888 8998888776789999999999998877776555443
No 32
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.96 E-value=4.4e-30 Score=181.47 Aligned_cols=143 Identities=28% Similarity=0.521 Sum_probs=121.6
Q ss_pred CCCCCCCCCCcceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeee-EEEEEECCeEEEEEEEeCCCcccccccc
Q 044772 9 LSSSTTTTTTATKFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNF-SANVMVDGRTVNLGLWDTAGQEDYNRLR 87 (159)
Q Consensus 9 ~~~~~~~~~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~ 87 (159)
.+............+||+|+|++|||||||+++|.++.+...+.++.+..+ ...+..++..+.+.+||++|++.+...+
T Consensus 10 ~~~~~~~~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~ 89 (191)
T 3dz8_A 10 GRENLYFQGNFDYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRTIT 89 (191)
T ss_dssp -CCEEEETTEEEECEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEETTTEEEEEEEETTTTEEEEEECHHHHHHCHHHH
T ss_pred chhccccccccCeeeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCeeeEEEEEEEEECCEEEEEEEEeCCChHHHHHHH
Confidence 344444445667889999999999999999999999998888888776555 4466677777889999999999999999
Q ss_pred cccccCCcEEEEEEeCCChhhHHhhhhhhHHHHHhhhC-CCCCEEEEeeCcccccCccccccCCCcc
Q 044772 88 PLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYA-PSVPIVLVGTKLDLRKDRQFHLDYPGAY 153 (159)
Q Consensus 88 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~r~v~~~~~~~~ 153 (159)
..++++++++|+|||++++.+|..+. .|+..+.... .++|++||+||+|+.+.+.+..++++.+
T Consensus 90 ~~~~~~~d~~i~v~d~~~~~s~~~~~--~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~ 154 (191)
T 3dz8_A 90 TAYYRGAMGFILMYDITNEESFNAVQ--DWATQIKTYSWDNAQVILVGNKCDMEEERVVPTEKGQLL 154 (191)
T ss_dssp HHHHTTCCEEEEEEETTCHHHHHTHH--HHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHH
T ss_pred HHHHccCCEEEEEEECcCHHHHHHHH--HHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHH
Confidence 99999999999999999999999988 8999998876 6899999999999998888877655443
No 33
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=99.96 E-value=8.3e-29 Score=172.46 Aligned_cols=133 Identities=33% Similarity=0.554 Sum_probs=116.6
Q ss_pred cceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEE
Q 044772 19 ATKFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADVFI 98 (159)
Q Consensus 19 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i 98 (159)
+...+||+++|++|||||||+++|+++.+...+.++.+..+...+..++..+.+.+||++|++.+...+..++.++++++
T Consensus 6 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i 85 (181)
T 2fn4_A 6 PSETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYTKICSVDGIPARLDILDTAGQEEFGAMREQYMRAGHGFL 85 (181)
T ss_dssp SSCEEEEEEEECTTSSHHHHHHHHHHSSCCSSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTTTSCCHHHHHHHCSEEE
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHhCcCccccCCCcCceEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhhCCEEE
Confidence 35679999999999999999999999999888888888877777788888899999999999999999999999999999
Q ss_pred EEEeCCChhhHHhhhhhhHHHHHhhh-C-CCCCEEEEeeCcccccCccccccCCCcc
Q 044772 99 LAFSLISRPSYENISKKKWVPELRHY-A-PSVPIVLVGTKLDLRKDRQFHLDYPGAY 153 (159)
Q Consensus 99 ~v~d~~~~~s~~~~~~~~~~~~i~~~-~-~~~piilv~nK~Dl~~~r~v~~~~~~~~ 153 (159)
+|||++++.+|..+. .|+..+... . .+.|+++|+||+|+...++++.++++.+
T Consensus 86 ~v~d~~~~~s~~~~~--~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~ 140 (181)
T 2fn4_A 86 LVFAINDRQSFNEVG--KLFTQILRVKDRDDFPVVLVGNKADLESQRQVPRSEASAF 140 (181)
T ss_dssp EEEETTCHHHHHHHH--HHHHHHHHHHTSSCCCEEEEEECGGGGGGCCSCHHHHHHH
T ss_pred EEEeCCCHHHHHHHH--HHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHH
Confidence 999999999999988 888877443 2 5899999999999988888776655443
No 34
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=99.96 E-value=1.1e-28 Score=170.41 Aligned_cols=132 Identities=33% Similarity=0.657 Sum_probs=108.4
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeeeE-EEEEECCeEEEEEEEeCCCcccccccccccccCCcEEE
Q 044772 20 TKFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFS-ANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADVFI 98 (159)
Q Consensus 20 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i 98 (159)
...+||+++|++|+|||||+++|.++.+...+.++.+..+. ..+.+++..+.+.+||++|++.+...+..+++++++++
T Consensus 4 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i 83 (170)
T 1z08_A 4 AYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGAI 83 (170)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-------CCSSTTCSEEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHHcCCCCcCCCCccceEEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHhccCCEEE
Confidence 56799999999999999999999999988777888776663 46677888899999999999999999999999999999
Q ss_pred EEEeCCChhhHHhhhhhhHHHHHhhhC-CCCCEEEEeeCcccccCccccccCCCcc
Q 044772 99 LAFSLISRPSYENISKKKWVPELRHYA-PSVPIVLVGTKLDLRKDRQFHLDYPGAY 153 (159)
Q Consensus 99 ~v~d~~~~~s~~~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~r~v~~~~~~~~ 153 (159)
+|||++++.+|..+. .|+..+.... .++|+++|+||+|+.+.+.++.++++.+
T Consensus 84 ~v~d~~~~~s~~~~~--~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~ 137 (170)
T 1z08_A 84 LVYDITDEDSFQKVK--NWVKELRKMLGNEICLCIVGNKIDLEKERHVSIQEAESY 137 (170)
T ss_dssp EEEETTCHHHHHHHH--HHHHHHHHHHGGGSEEEEEEECGGGGGGCCSCHHHHHHH
T ss_pred EEEECcCHHHHHHHH--HHHHHHHHhcCCCCeEEEEEECcccccccccCHHHHHHH
Confidence 999999999999988 8988887654 5799999999999988887776654443
No 35
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=99.96 E-value=6.5e-29 Score=170.75 Aligned_cols=131 Identities=31% Similarity=0.559 Sum_probs=113.0
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEEE
Q 044772 21 KFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADVFILA 100 (159)
Q Consensus 21 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v 100 (159)
..+||+++|++|+|||||+++|.++.+...+.++.+..+...+..++..+.+.+||++|++.+...+..++..++++++|
T Consensus 3 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v 82 (168)
T 1u8z_A 3 ALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCV 82 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC---CHHHHHHHHHHCSEEEEE
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCccCCCCCCCcceEEEEEEEECCEEEEEEEEECCCcchhHHHHHHHhhcCCEEEEE
Confidence 46899999999999999999999999888888888877777778888889999999999999999999999999999999
Q ss_pred EeCCChhhHHhhhhhhHHHHHhhhCC--CCCEEEEeeCcccccCccccccCCCcc
Q 044772 101 FSLISRPSYENISKKKWVPELRHYAP--SVPIVLVGTKLDLRKDRQFHLDYPGAY 153 (159)
Q Consensus 101 ~d~~~~~s~~~~~~~~~~~~i~~~~~--~~piilv~nK~Dl~~~r~v~~~~~~~~ 153 (159)
||++++++|..+. .|+..+..... +.|+++|+||+|+.+.++++.++++.+
T Consensus 83 ~d~~~~~s~~~~~--~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~ 135 (168)
T 1u8z_A 83 FSITEMESFAATA--DFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNR 135 (168)
T ss_dssp EETTCHHHHHHHH--HHHHHHHHHHCCTTSCEEEEEECGGGGGGCCSCHHHHHHH
T ss_pred EECCCHHHHHHHH--HHHHHHHHhcCCCCCcEEEEEECccccccCccCHHHHHHH
Confidence 9999999999988 89888887653 899999999999988777766554443
No 36
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=99.96 E-value=3.1e-29 Score=175.08 Aligned_cols=127 Identities=87% Similarity=1.425 Sum_probs=96.5
Q ss_pred CcceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEE
Q 044772 18 TATKFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADVF 97 (159)
Q Consensus 18 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ 97 (159)
...+.+||+++|++|+|||||+++|.++.+...+.+|.+..+...+..++..+.+.+||++|++.+...+..++++++++
T Consensus 4 ~~~~~~ki~v~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ 83 (182)
T 3bwd_D 4 SASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGATVNLGLWDTAGQEDYNRLRPLSYRGADVF 83 (182)
T ss_dssp ---CCCEEEEECSTTSSHHHHHHHHHHSCCC----------CBCCCC-------CEEECCCC-CTTTTTGGGGGTTCSEE
T ss_pred CCCceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCeeeeeEEEEEEECCEEEEEEEEECCCChhhhhhHHhhccCCCEE
Confidence 34567999999999999999999999999888888888766655555667778899999999999999999999999999
Q ss_pred EEEEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCcccccCccc
Q 044772 98 ILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKDRQF 145 (159)
Q Consensus 98 i~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~r~v 145 (159)
++|||++++.+|..+.. .|+..+....++.|+++|+||+|+.+.+.+
T Consensus 84 i~v~d~~~~~s~~~~~~-~~~~~~~~~~~~~piilv~nK~Dl~~~~~~ 130 (182)
T 3bwd_D 84 ILAFSLISKASYENVSK-KWIPELKHYAPGVPIVLVGTKLDLRDDKQF 130 (182)
T ss_dssp EEEEETTCHHHHHHHHH-THHHHHHHHCTTCCEEEEEECHHHHTCHHH
T ss_pred EEEEECCCHHHHHHHHH-HHHHHHHHhCCCCCEEEEEechhhhcCccc
Confidence 99999999999999875 799999888778999999999999877664
No 37
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=99.96 E-value=2e-28 Score=168.79 Aligned_cols=132 Identities=33% Similarity=0.573 Sum_probs=114.4
Q ss_pred cceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeee-EEEEEECCeEEEEEEEeCCCcccccccccccccCCcEE
Q 044772 19 ATKFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNF-SANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADVF 97 (159)
Q Consensus 19 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ 97 (159)
+...+||+++|++|+|||||+++|+++.+...+.++.+..+ .....+++..+.+.+||++|++.+...+..++..++++
T Consensus 3 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~ 82 (170)
T 1r2q_A 3 KICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAA 82 (170)
T ss_dssp EEEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEE
T ss_pred CCceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHhhhhhHHhccCCCEE
Confidence 35679999999999999999999999998877777776665 44667788889999999999999999999999999999
Q ss_pred EEEEeCCChhhHHhhhhhhHHHHHhhhC-CCCCEEEEeeCcccccCccccccCCCc
Q 044772 98 ILAFSLISRPSYENISKKKWVPELRHYA-PSVPIVLVGTKLDLRKDRQFHLDYPGA 152 (159)
Q Consensus 98 i~v~d~~~~~s~~~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~r~v~~~~~~~ 152 (159)
++|||++++.+|..+. .|+..+.... +++|+++|+||+|+.+.+.+..++++.
T Consensus 83 i~v~d~~~~~s~~~~~--~~~~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~ 136 (170)
T 1r2q_A 83 IVVYDITNEESFARAK--NWVKELQRQASPNIVIALSGNKADLANKRAVDFQEAQS 136 (170)
T ss_dssp EEEEETTCHHHHHHHH--HHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHH
T ss_pred EEEEECCCHHHHHHHH--HHHHHHHHhcCCCCcEEEEEECccCccccccCHHHHHH
Confidence 9999999999999988 8988888764 689999999999998877776655443
No 38
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=99.96 E-value=3.4e-28 Score=169.63 Aligned_cols=134 Identities=33% Similarity=0.565 Sum_probs=115.1
Q ss_pred CcceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeee-EEEEEECCeEEEEEEEeCCCcccccccccccccCCcE
Q 044772 18 TATKFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNF-SANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADV 96 (159)
Q Consensus 18 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ 96 (159)
.+...+||+++|++|+|||||+++|+++.+...+.++.+..+ ...+.+++..+.+.+||++|++.+...+..+++.+++
T Consensus 8 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 87 (181)
T 2efe_B 8 NKSINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAA 87 (181)
T ss_dssp --CEEEEEEEECCTTSCHHHHHHHHHHCCCTTTSCCCSCCSEEEEEEEETTEEEEEEEEECCCSGGGGGGTHHHHTTCSE
T ss_pred CCccceEEEEECcCCCCHHHHHHHHHcCCCCCcCCCCceeEEEEEEEEECCEEEEEEEEeCCCChhhhhhhHHHhccCCE
Confidence 346779999999999999999999999998877777776655 4466778888899999999999999999999999999
Q ss_pred EEEEEeCCChhhHHhhhhhhHHHHHhhhC-CCCCEEEEeeCcccccCccccccCCCcc
Q 044772 97 FILAFSLISRPSYENISKKKWVPELRHYA-PSVPIVLVGTKLDLRKDRQFHLDYPGAY 153 (159)
Q Consensus 97 ~i~v~d~~~~~s~~~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~r~v~~~~~~~~ 153 (159)
+|+|||++++.+|..+. .|+..+.... +++|+++|+||+|+.+.+.++.++.+.+
T Consensus 88 ~i~v~d~~~~~s~~~~~--~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~ 143 (181)
T 2efe_B 88 AIIVFDVTNQASFERAK--KWVQELQAQGNPNMVMALAGNKSDLLDARKVTAEDAQTY 143 (181)
T ss_dssp EEEEEETTCHHHHHHHH--HHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHH
T ss_pred EEEEEECCCHHHHHHHH--HHHHHHHHhcCCCCcEEEEEECCcccccccCCHHHHHHH
Confidence 99999999999999888 8998888775 5899999999999988777766554443
No 39
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.96 E-value=4.2e-28 Score=173.46 Aligned_cols=124 Identities=57% Similarity=1.003 Sum_probs=105.9
Q ss_pred CcceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEE
Q 044772 18 TATKFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADVF 97 (159)
Q Consensus 18 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ 97 (159)
.....+||+++|++|||||||+++|.++.+...+.++.+..+...+..++..+.+.+||++|++.+...+..++.+++++
T Consensus 21 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ 100 (207)
T 2fv8_A 21 QSMIRKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVI 100 (207)
T ss_dssp GGSEEEEEEEEECTTSSHHHHHHHHHHSSCC-------CCEEEEEEEETTEEEEEEEEECTTCTTCTTTGGGGCTTCCEE
T ss_pred ccccCcEEEEECcCCCCHHHHHHHHhcCCCCCcCCCcccceEEEEEEECCEEEEEEEEECCCcHHHHHHHHhhcCCCCEE
Confidence 34567899999999999999999999999888888888877766677888889999999999999999999999999999
Q ss_pred EEEEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCcccccC
Q 044772 98 ILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKD 142 (159)
Q Consensus 98 i~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~ 142 (159)
|+|||++++.+|..+.. .|+..+....++.|+++|+||+|+...
T Consensus 101 i~v~d~~~~~s~~~~~~-~~~~~~~~~~~~~piilv~nK~Dl~~~ 144 (207)
T 2fv8_A 101 LMCFSVDSPDSLENIPE-KWVPEVKHFCPNVPIILVANKKDLRSD 144 (207)
T ss_dssp EEEEETTCHHHHHHHHH-THHHHHHHHSTTCCEEEEEECGGGGGC
T ss_pred EEEEECCCHHHHHHHHH-HHHHHHHHhCCCCCEEEEEEchhhhcc
Confidence 99999999999999854 899999887789999999999999765
No 40
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=99.96 E-value=2.4e-28 Score=176.68 Aligned_cols=135 Identities=32% Similarity=0.548 Sum_probs=110.3
Q ss_pred CcceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeee-EEEEEECCeEEEEEEEeCCCcccccccccccccCCcE
Q 044772 18 TATKFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNF-SANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADV 96 (159)
Q Consensus 18 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ 96 (159)
.....+||+|+|++|||||||+++|.++.+...+.++.+..+ ...+.+++..+.+.+||++|++.+...+..+++.+++
T Consensus 9 ~~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 88 (223)
T 3cpj_B 9 DYDLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQERYRAITSAYYRGAVG 88 (223)
T ss_dssp -CCEEEEEEEESCTTSSHHHHHHHHHHCCCCC------CCSEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGTTTCCE
T ss_pred CCCeeeEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCccchhhhHHHHhccCCE
Confidence 346789999999999999999999999998877778877666 3466778888999999999999999999999999999
Q ss_pred EEEEEeCCChhhHHhhhhhhHHHHHhhhC-CCCCEEEEeeCcccccCccccccCCCccc
Q 044772 97 FILAFSLISRPSYENISKKKWVPELRHYA-PSVPIVLVGTKLDLRKDRQFHLDYPGAYT 154 (159)
Q Consensus 97 ~i~v~d~~~~~s~~~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~r~v~~~~~~~~~ 154 (159)
+|+|||++++.+|..+. .|+..+.... .++|++||+||+|+...++++.++++.|+
T Consensus 89 vilV~D~~~~~s~~~~~--~~l~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~ 145 (223)
T 3cpj_B 89 ALIVYDISKSSSYENCN--HWLSELRENADDNVAVGLIGNKSDLAHLRAVPTEESKTFA 145 (223)
T ss_dssp EEEEEC-CCHHHHHHHH--HHHHHHHHHCC--CEEEEEECCGGGGGGCCSCHHHHHHHH
T ss_pred EEEEEeCCCHHHHHHHH--HHHHHHHHhCCCCCeEEEEEECcccccccccCHHHHHHHH
Confidence 99999999999999988 8999888775 58999999999999888888766555443
No 41
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=99.96 E-value=1e-28 Score=172.17 Aligned_cols=127 Identities=21% Similarity=0.292 Sum_probs=105.8
Q ss_pred cceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEE
Q 044772 19 ATKFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADVFI 98 (159)
Q Consensus 19 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i 98 (159)
..+.+||+++|++|||||||+++|.++.+.. +.+|.+..+...+.+++..+.+++||++|++. ..++++++++|
T Consensus 4 ~~~~~ki~~vG~~~vGKTsli~~l~~~~~~~-~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~-----~~~~~~~d~~i 77 (178)
T 2iwr_A 4 SIPELRLGVLGDARSGKSSLIHRFLTGSYQV-LEKTESEQYKKEMLVDGQTHLVLIREEAGAPD-----AKFSGWADAVI 77 (178)
T ss_dssp CCCEEEEEEECCGGGCHHHHHHHHHHSCCCC-CSSCSSSEEEEEEEETTEEEEEEEEECSSSCC-----HHHHHHCSEEE
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHhCCCCC-cCCCcceeEEEEEEECCEEEEEEEEECCCCch-----hHHHHhCCEEE
Confidence 3567999999999999999999999999876 77888877777788888889999999999876 46778899999
Q ss_pred EEEeCCChhhHHhhhhhhHHHHHhhh---C-CCCCEEEEeeCcccc--cCccccccCCCcc
Q 044772 99 LAFSLISRPSYENISKKKWVPELRHY---A-PSVPIVLVGTKLDLR--KDRQFHLDYPGAY 153 (159)
Q Consensus 99 ~v~d~~~~~s~~~~~~~~~~~~i~~~---~-~~~piilv~nK~Dl~--~~r~v~~~~~~~~ 153 (159)
+|||++++++|..+. .|+..+... . +++|++||+||+|+. ..|.++.++++.+
T Consensus 78 lv~D~~~~~s~~~~~--~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~ 136 (178)
T 2iwr_A 78 FVFSLEDENSFQAVS--RLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDARARAL 136 (178)
T ss_dssp EEEETTCHHHHHHHH--HHHHHHHHHHCSSSCCCEEEEEEECTTCBTTBCCCSCHHHHHHH
T ss_pred EEEECcCHHHHHHHH--HHHHHHHHHHhcCCCCCCEEEEEECccccccccCcCCHHHHHHH
Confidence 999999999999988 665544433 2 579999999999994 5677776665544
No 42
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=99.96 E-value=5e-28 Score=172.66 Aligned_cols=133 Identities=32% Similarity=0.679 Sum_probs=116.6
Q ss_pred cceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeee-EEEEEECCeEEEEEEEeCCCcccccccccccccCCcEE
Q 044772 19 ATKFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNF-SANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADVF 97 (159)
Q Consensus 19 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ 97 (159)
....+||+|+|++|||||||+++|.++.+...+.++.+..+ ...+.+++..+.+.+||++|++.+...+..++++++++
T Consensus 5 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~v 84 (206)
T 2bcg_Y 5 YDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHGI 84 (206)
T ss_dssp CSEEEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGGTTCSEE
T ss_pred cCcceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEeCCChHHHHHHHHHhccCCCEE
Confidence 35679999999999999999999999999888888877666 34667788889999999999999999999999999999
Q ss_pred EEEEeCCChhhHHhhhhhhHHHHHhhhC-CCCCEEEEeeCcccccCccccccCCCcc
Q 044772 98 ILAFSLISRPSYENISKKKWVPELRHYA-PSVPIVLVGTKLDLRKDRQFHLDYPGAY 153 (159)
Q Consensus 98 i~v~d~~~~~s~~~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~r~v~~~~~~~~ 153 (159)
|+|||++++.+|..+. .|+..+.... .+.|++||+||+|+.+.+.+..++++.+
T Consensus 85 ilv~d~~~~~s~~~~~--~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~ 139 (206)
T 2bcg_Y 85 IIVYDVTDQESFNGVK--MWLQEIDRYATSTVLKLLVGNKCDLKDKRVVEYDVAKEF 139 (206)
T ss_dssp EEEEETTCHHHHHHHH--HHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHH
T ss_pred EEEEECcCHHHHHHHH--HHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHH
Confidence 9999999999999998 8999888765 5799999999999988887776654443
No 43
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=99.96 E-value=4.1e-28 Score=170.87 Aligned_cols=135 Identities=32% Similarity=0.512 Sum_probs=101.6
Q ss_pred CCCCCCCcceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCcccccccccccc
Q 044772 12 STTTTTTATKFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRLRPLSY 91 (159)
Q Consensus 12 ~~~~~~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~ 91 (159)
.........+.+||+++|++|||||||+++|.++.+...+.++.+..+...+..++..+.+.+||++|++.+...+..++
T Consensus 11 ~~~~~~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~ 90 (190)
T 3con_A 11 RENLYFQGMTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYM 90 (190)
T ss_dssp --------CEEEEEEEECSTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC-----------C
T ss_pred cccccccccceeEEEEECcCCCCHHHHHHHHHcCCCccccCCccceEEEEEEEECCEEEEEEEEECCChHHHHHHHHHhh
Confidence 33444455678999999999999999999999998888888888777777778888889999999999999999999999
Q ss_pred cCCcEEEEEEeCCChhhHHhhhhhhHHHHHhhhC--CCCCEEEEeeCcccccCccccccC
Q 044772 92 RGADVFILAFSLISRPSYENISKKKWVPELRHYA--PSVPIVLVGTKLDLRKDRQFHLDY 149 (159)
Q Consensus 92 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~--~~~piilv~nK~Dl~~~r~v~~~~ 149 (159)
..++++++|||++++.+|..+. .|+..+.... .++|+++|+||+|+.. +.+..++
T Consensus 91 ~~~d~~i~v~d~~~~~s~~~~~--~~~~~i~~~~~~~~~p~ilv~nK~Dl~~-~~~~~~~ 147 (190)
T 3con_A 91 RTGEGFLCVFAINNSKSFADIN--LYREQIKRVKDSDDVPMVLVGNKCDLPT-RTVDTKQ 147 (190)
T ss_dssp TTCSEEEEEEETTCHHHHHHHH--HHHHHHHHHHTCSCCCEEEEEECTTCSC-CCSCHHH
T ss_pred CcCCEEEEEEECcCHHHHHHHH--HHHHHHHHHhCCCCCeEEEEEECCcCCc-ccCCHHH
Confidence 9999999999999999999987 8988887765 3799999999999976 4444443
No 44
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=99.96 E-value=1.9e-28 Score=175.06 Aligned_cols=126 Identities=68% Similarity=1.189 Sum_probs=110.9
Q ss_pred CcceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEE
Q 044772 18 TATKFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADVF 97 (159)
Q Consensus 18 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ 97 (159)
.....+||+++|++|||||||+++|..+.+...+.++.+..+...+.+++..+.+.+||++|++.+...+..++++++++
T Consensus 26 ~~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ 105 (204)
T 4gzl_A 26 FQGQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVF 105 (204)
T ss_dssp ----CEEEEEEESTTSSHHHHHHHHHHSCCCC-CCCCSEEEEEEEEECC-CEEEEEEEEECCSGGGTTTGGGGCTTCSEE
T ss_pred hcCCeEEEEEECcCCCCHHHHHHHHHhCCCCCCcCCeecceeEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEE
Confidence 34567999999999999999999999999988888888887777778888889999999999999999999999999999
Q ss_pred EEEEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCcccccCcc
Q 044772 98 ILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKDRQ 144 (159)
Q Consensus 98 i~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~r~ 144 (159)
++|||++++.+|..+.. .|+..+....++.|++||+||+|+...+.
T Consensus 106 i~v~d~~~~~s~~~~~~-~~~~~~~~~~~~~piilv~nK~Dl~~~~~ 151 (204)
T 4gzl_A 106 LICFSLVSPASFENVRA-KWYPEVRHHCPNTPIILVGTKLDLRDDKD 151 (204)
T ss_dssp EEEEETTCHHHHHHHHH-THHHHHHHHCSSCCEEEEEECHHHHTCHH
T ss_pred EEEEECCCHHHHHHHHH-HHHHHHHHhCCCCCEEEEEechhhccchh
Confidence 99999999999999875 89999998888999999999999987654
No 45
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=99.96 E-value=3.5e-28 Score=170.41 Aligned_cols=132 Identities=31% Similarity=0.560 Sum_probs=114.9
Q ss_pred cceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeee-EEEEEECCeEEEEEEEeCCCcccccccccccccCCcEE
Q 044772 19 ATKFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNF-SANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADVF 97 (159)
Q Consensus 19 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ 97 (159)
..+.+||+++|++|||||||+++|+++.+...+.++.+..+ ...+..++..+.+.+||++|++.+...+..++++++++
T Consensus 7 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 86 (186)
T 2bme_A 7 YDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGA 86 (186)
T ss_dssp CSEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTSTTCSEE
T ss_pred cccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHHhcCCEE
Confidence 35679999999999999999999999998887778777555 45667788888999999999999999999999999999
Q ss_pred EEEEeCCChhhHHhhhhhhHHHHHhhhC-CCCCEEEEeeCcccccCccccccCCCc
Q 044772 98 ILAFSLISRPSYENISKKKWVPELRHYA-PSVPIVLVGTKLDLRKDRQFHLDYPGA 152 (159)
Q Consensus 98 i~v~d~~~~~s~~~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~r~v~~~~~~~ 152 (159)
|+|||++++.+|..+. .|+..+.... .++|++||+||+|+...+.++.++++.
T Consensus 87 i~v~d~~~~~s~~~~~--~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~ 140 (186)
T 2bme_A 87 LLVYDITSRETYNALT--NWLTDARMLASQNIVIILCGNKKDLDADREVTFLEASR 140 (186)
T ss_dssp EEEEETTCHHHHHTHH--HHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHH
T ss_pred EEEEECcCHHHHHHHH--HHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHH
Confidence 9999999999999988 8988887765 689999999999998877777655444
No 46
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.95 E-value=6.1e-28 Score=168.20 Aligned_cols=134 Identities=32% Similarity=0.596 Sum_probs=107.5
Q ss_pred CcceeeEEEEEcCCCCCHHHHHHHHhcCCCC-CCcccceeeeeEE-EEEECCeEEEEEEEeCCCcccccccccccccCCc
Q 044772 18 TATKFIKCVTVRDGAVGKTCLLISYTGNTFP-TDYVPTVFDNFSA-NVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGAD 95 (159)
Q Consensus 18 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~-~~~~~t~~~~~~~-~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~ 95 (159)
.....+||+++|++|||||||+++|.++.+. ..+.++.+..+.. .+..++..+.+.+||++|++.+...+..++.+++
T Consensus 6 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d 85 (180)
T 2g6b_A 6 FYDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDAH 85 (180)
T ss_dssp CCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC--------CCGGGCS
T ss_pred cCCcceEEEEECcCCCCHHHHHHHHHhCCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHccCCC
Confidence 3467899999999999999999999998885 4567777766643 5577888899999999999999999999999999
Q ss_pred EEEEEEeCCChhhHHhhhhhhHHHHHhhhC-CCCCEEEEeeCcccccCccccccCCCcc
Q 044772 96 VFILAFSLISRPSYENISKKKWVPELRHYA-PSVPIVLVGTKLDLRKDRQFHLDYPGAY 153 (159)
Q Consensus 96 ~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~r~v~~~~~~~~ 153 (159)
++++|||++++.+|..+. .|+..+.... .+.|+++|+||+|+...+.+..++++.+
T Consensus 86 ~ii~v~d~~~~~s~~~~~--~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~ 142 (180)
T 2g6b_A 86 ALLLLYDVTNKASFDNIQ--AWLTEIHEYAQHDVALMLLGNKVDSAHERVVKREDGEKL 142 (180)
T ss_dssp EEEEEEETTCHHHHHTHH--HHHHHHHHHSCTTCEEEEEEECCSTTSCCCSCHHHHHHH
T ss_pred EEEEEEECCCHHHHHHHH--HHHHHHHHhCCCCCcEEEEEECcccCcccccCHHHHHHH
Confidence 999999999999999988 8999888776 5899999999999988777766554443
No 47
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=99.95 E-value=4.4e-28 Score=167.22 Aligned_cols=132 Identities=27% Similarity=0.546 Sum_probs=115.2
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeee-EEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEE
Q 044772 20 TKFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNF-SANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADVFI 98 (159)
Q Consensus 20 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i 98 (159)
.+.+||+++|++|+|||||+++|.++.+...+.++.+..+ ......++..+.+.+||++|++.+...+..+++++++++
T Consensus 4 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i 83 (170)
T 1z0j_A 4 LRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRGSAAAI 83 (170)
T ss_dssp EEEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGTHHHHTTCSEEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCeEEEEEEEcCCCchhhhcccHhhCcCCCEEE
Confidence 4679999999999999999999999998888788877666 446677888899999999999999999999999999999
Q ss_pred EEEeCCChhhHHhhhhhhHHHHHhhhC-CCCCEEEEeeCcccccCccccccCCCcc
Q 044772 99 LAFSLISRPSYENISKKKWVPELRHYA-PSVPIVLVGTKLDLRKDRQFHLDYPGAY 153 (159)
Q Consensus 99 ~v~d~~~~~s~~~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~r~v~~~~~~~~ 153 (159)
+|||++++.++..+. .|+..+.... +..|+++|+||+|+.+.+++..++.+.+
T Consensus 84 ~v~d~~~~~s~~~~~--~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~v~~~~~~~~ 137 (170)
T 1z0j_A 84 IVYDITKEETFSTLK--NWVRELRQHGPPSIVVAIAGNKCDLTDVREVMERDAKDY 137 (170)
T ss_dssp EEEETTCHHHHHHHH--HHHHHHHHHSCTTSEEEEEEECTTCGGGCCSCHHHHHHH
T ss_pred EEEECcCHHHHHHHH--HHHHHHHHhCCCCCcEEEEEECCccccccccCHHHHHHH
Confidence 999999999999987 8999888774 6899999999999988777766554443
No 48
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=99.95 E-value=3.6e-28 Score=171.63 Aligned_cols=134 Identities=31% Similarity=0.653 Sum_probs=117.0
Q ss_pred CcceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeee-EEEEEECCeEEEEEEEeCCCcccccccccccccCCcE
Q 044772 18 TATKFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNF-SANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADV 96 (159)
Q Consensus 18 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ 96 (159)
.....+||+++|++|||||||+++|+++.+...+.++.+..+ ...+..++..+.+.+||++|++.+...+..+++.+|+
T Consensus 12 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 91 (196)
T 3tkl_A 12 EYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHG 91 (196)
T ss_dssp CCSEEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGCTTHHHHHTTCSE
T ss_pred ccccceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHHhhCCE
Confidence 345789999999999999999999999998888788776655 4567788888999999999999999999999999999
Q ss_pred EEEEEeCCChhhHHhhhhhhHHHHHhhhC-CCCCEEEEeeCcccccCccccccCCCcc
Q 044772 97 FILAFSLISRPSYENISKKKWVPELRHYA-PSVPIVLVGTKLDLRKDRQFHLDYPGAY 153 (159)
Q Consensus 97 ~i~v~d~~~~~s~~~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~r~v~~~~~~~~ 153 (159)
+|+|||++++.+|..+. .|+..+.... .+.|++||+||+|+...+.+..++++.+
T Consensus 92 ~i~v~d~~~~~s~~~~~--~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~ 147 (196)
T 3tkl_A 92 IIVVYDVTDQESFNNVK--QWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEF 147 (196)
T ss_dssp EEEEEETTCHHHHHTHH--HHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHH
T ss_pred EEEEEECcCHHHHHHHH--HHHHHHHHhcCCCCCEEEEEECcccccccccCHHHHHHH
Confidence 99999999999999998 8999888775 4799999999999998887776554443
No 49
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=99.95 E-value=2.1e-28 Score=168.07 Aligned_cols=130 Identities=31% Similarity=0.533 Sum_probs=114.2
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEEE
Q 044772 21 KFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADVFILA 100 (159)
Q Consensus 21 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v 100 (159)
+.+||+++|++|+|||||+++|.++.+...+.++.+..+...+.+++..+.+.+||++|++.+...+..++++++++++|
T Consensus 2 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~~~~i~v 81 (167)
T 1kao_A 2 REYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFILV 81 (167)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEEE
T ss_pred cEEEEEEECCCCCCHHHHHHHHHcCCCcccCCCCcceeEEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEEEEE
Confidence 46899999999999999999999999888888888777777778888889999999999999998889999999999999
Q ss_pred EeCCChhhHHhhhhhhHHHHHhhhC--CCCCEEEEeeCcccccCccccccCCCc
Q 044772 101 FSLISRPSYENISKKKWVPELRHYA--PSVPIVLVGTKLDLRKDRQFHLDYPGA 152 (159)
Q Consensus 101 ~d~~~~~s~~~~~~~~~~~~i~~~~--~~~piilv~nK~Dl~~~r~v~~~~~~~ 152 (159)
||++++.++..+. .|+..+.... .+.|+++|+||+|+...++++.++++.
T Consensus 82 ~d~~~~~s~~~~~--~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~ 133 (167)
T 1kao_A 82 YSLVNQQSFQDIK--PMRDQIIRVKRYEKVPVILVGNKVDLESEREVSSSEGRA 133 (167)
T ss_dssp EETTCHHHHHHHH--HHHHHHHHHTTTSCCCEEEEEECGGGGGGCCSCHHHHHH
T ss_pred EeCCCHHHHHHHH--HHHHHHHHhcCCCCCCEEEEEECCcccccccCCHHHHHH
Confidence 9999999999888 8888777654 489999999999998877776655443
No 50
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=99.95 E-value=1.7e-28 Score=174.80 Aligned_cols=134 Identities=32% Similarity=0.593 Sum_probs=105.8
Q ss_pred CcceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeee-EEEEEECCeEEEEEEEeCCCcccccccccccccCCcE
Q 044772 18 TATKFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNF-SANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADV 96 (159)
Q Consensus 18 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ 96 (159)
.....+||+|+|++|||||||+++|+++.+...+.++.+..+ ...+.+++..+.+.+||++|++.+...+..+++.+++
T Consensus 21 ~~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ 100 (200)
T 2o52_A 21 WSDFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAG 100 (200)
T ss_dssp -CCEEEEEEEEESTTSSHHHHHHHHHC------------CCEEEEEEEETTEEEEEEEECCTTHHHHSCCCHHHHTTCSE
T ss_pred ccCcceEEEEECcCCCCHHHHHHHHHhCCCCccCCCcccceeEEEEEEECCeeeEEEEEcCCCcHhHHHHHHHHhccCCE
Confidence 346789999999999999999999999998877777777555 4466778888999999999999999999999999999
Q ss_pred EEEEEeCCChhhHHhhhhhhHHHHHhhhC-CCCCEEEEeeCcccccCccccccCCCcc
Q 044772 97 FILAFSLISRPSYENISKKKWVPELRHYA-PSVPIVLVGTKLDLRKDRQFHLDYPGAY 153 (159)
Q Consensus 97 ~i~v~d~~~~~s~~~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~r~v~~~~~~~~ 153 (159)
+|+|||++++.+|..+. .|+..+.... .++|++||+||+|+...+.++.+++..+
T Consensus 101 ~i~v~d~~~~~s~~~~~--~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~ 156 (200)
T 2o52_A 101 ALLVYDITSRETYNSLA--AWLTDARTLASPNIVVILCGNKKDLDPEREVTFLEASRF 156 (200)
T ss_dssp EEEEEETTCHHHHHTHH--HHHHHHHHHTCTTCEEEEEEECGGGGGGCCSCHHHHHHH
T ss_pred EEEEEECcCHHHHHHHH--HHHHHHHHhcCCCCcEEEEEECCCcccccccCHHHHHHH
Confidence 99999999999999988 8998887765 5899999999999988777776554443
No 51
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=99.95 E-value=4.9e-28 Score=172.21 Aligned_cols=132 Identities=27% Similarity=0.577 Sum_probs=115.1
Q ss_pred cceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeee-EEEEEECCeEEEEEEEeCCCcccccccccccccCCcEE
Q 044772 19 ATKFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNF-SANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADVF 97 (159)
Q Consensus 19 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ 97 (159)
....+||+|+|++|||||||+++|+++.+...+.++.+..+ ...+..++..+.+.+||++|++.+...+..++++++++
T Consensus 5 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~i 84 (203)
T 1zbd_A 5 FDYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLERYRTITTAYYRGAMGF 84 (203)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHTCCCCSCCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTGGGCSEE
T ss_pred cceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEEECCeEEEEEEEECCCchhhcchHHHhhcCCCEE
Confidence 35679999999999999999999999998877788877665 34666788889999999999999999999999999999
Q ss_pred EEEEeCCChhhHHhhhhhhHHHHHhhhC-CCCCEEEEeeCcccccCccccccCCCc
Q 044772 98 ILAFSLISRPSYENISKKKWVPELRHYA-PSVPIVLVGTKLDLRKDRQFHLDYPGA 152 (159)
Q Consensus 98 i~v~d~~~~~s~~~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~r~v~~~~~~~ 152 (159)
|+|||++++.+|..+. .|+..+.... .+.|++||+||+|+.+.+.+..++++.
T Consensus 85 i~v~d~~~~~s~~~~~--~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~ 138 (203)
T 1zbd_A 85 ILMYDITNEESFNAVQ--DWSTQIKTYSWDNAQVLLVGNKCDMEDERVVSSERGRQ 138 (203)
T ss_dssp EEEEETTCHHHHHHHH--HHHHHHHHHSCSSCEEEEEEECTTCTTSCCSCHHHHHH
T ss_pred EEEEECcCHHHHHHHH--HHHHHHHHhcCCCCCEEEEEECcccCcccccCHHHHHH
Confidence 9999999999999888 8999888776 589999999999998887776655443
No 52
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=99.95 E-value=3e-28 Score=175.49 Aligned_cols=135 Identities=24% Similarity=0.401 Sum_probs=105.7
Q ss_pred CCcceeeEEEEEcCCCCCHHHHHHHHhcCC--CCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccc-ccccccccccC
Q 044772 17 TTATKFIKCVTVRDGAVGKTCLLISYTGNT--FPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQED-YNRLRPLSYRG 93 (159)
Q Consensus 17 ~~~~~~~ki~vvG~~~~GKSsli~~l~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~-~~~~~~~~~~~ 93 (159)
......+||+|+|++|||||||+++|++.. +...+.++..+.+...+.+++..+.+.+||++|++. +..+...+++.
T Consensus 32 ~~~~~~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~~~~~g~d~~~~~i~~~~~~~~l~~~Dt~g~~~~~~~l~~~~~~~ 111 (211)
T 2g3y_A 32 ESGNTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQV 111 (211)
T ss_dssp ---CCEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC---CCTTEEEEEEEETTEEEEEEEECCTTTTHHHHHHHHCCCCC
T ss_pred ccCCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCcCCccceeeEEEEEEECCeeeEEEEeecCCCcchhhhHHHHHHhh
Confidence 355667999999999999999999999644 344444433344466777889889999999999876 45566778899
Q ss_pred CcEEEEEEeCCChhhHHhhhhhhHHHHHhhh--CCCCCEEEEeeCcccccCccccccCCCcc
Q 044772 94 ADVFILAFSLISRPSYENISKKKWVPELRHY--APSVPIVLVGTKLDLRKDRQFHLDYPGAY 153 (159)
Q Consensus 94 ~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~--~~~~piilv~nK~Dl~~~r~v~~~~~~~~ 153 (159)
++++|+|||++++.+|..+. .|...+... ..++|++|||||+|+.+.|+++.++++.+
T Consensus 112 a~~~ilVydvt~~~sf~~~~--~~~~~l~~~~~~~~~piilVgNK~DL~~~r~v~~~e~~~~ 171 (211)
T 2g3y_A 112 GDAYLIVYSITDRASFEKAS--ELRIQLRRARQTEDIPIILVGNKSDLVRCREVSVSEGRAC 171 (211)
T ss_dssp CSEEEEEEETTCHHHHHHHH--HHHHHHHTSGGGTTSCEEEEEECTTCGGGCCSCHHHHHHH
T ss_pred CCEEEEEEECCCHHHHHHHH--HHHHHHHHHhCCCCCcEEEEEEChHHhcCceEeHHHHHHH
Confidence 99999999999999999998 888777654 25799999999999998888887765544
No 53
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.95 E-value=5.5e-28 Score=166.56 Aligned_cols=129 Identities=31% Similarity=0.570 Sum_probs=111.8
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeee-EEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEE
Q 044772 21 KFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNF-SANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL 99 (159)
Q Consensus 21 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~ 99 (159)
..+||+++|++|+|||||+++|.++.+...+.++.+..+ .....+++..+.+.+||++|++.+...+..++++++++++
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i~ 81 (170)
T 1ek0_A 2 TSIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPXYYRNAQAALV 81 (170)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEE
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCChhhhhhhhhhhccCcEEEE
Confidence 468999999999999999999999998877778877665 4566778888999999999999999999999999999999
Q ss_pred EEeCCChhhHHhhhhhhHHHHHhhhC-CCCCEEEEeeCcccccC---ccccccCCC
Q 044772 100 AFSLISRPSYENISKKKWVPELRHYA-PSVPIVLVGTKLDLRKD---RQFHLDYPG 151 (159)
Q Consensus 100 v~d~~~~~s~~~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~---r~v~~~~~~ 151 (159)
|||++++.++..+. .|+..+.... .+.|+++|+||+|+... +++..++++
T Consensus 82 v~d~~~~~s~~~~~--~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~ 135 (170)
T 1ek0_A 82 VYDVTKPQSFIKAR--HWVKELHEQASKDIIIALVGNKIDXLQEGGERKVAREEGE 135 (170)
T ss_dssp EEETTCHHHHHHHH--HHHHHHHHHSCTTCEEEEEEECGGGGGSSCCCCSCHHHHH
T ss_pred EEecCChHHHHHHH--HHHHHHHHhcCCCCcEEEEEECCCccccccccCCCHHHHH
Confidence 99999999999988 8998888765 68999999999999765 566554443
No 54
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=99.95 E-value=6.5e-28 Score=167.67 Aligned_cols=132 Identities=37% Similarity=0.665 Sum_probs=109.9
Q ss_pred CcceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeee-EEEEEECCeEEEEEEEeCCCcccccccccccccCCcE
Q 044772 18 TATKFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNF-SANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADV 96 (159)
Q Consensus 18 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ 96 (159)
.....+||+++|++|+|||||+++|+++.+...+.++.+..+ ...+.+++..+.+.+||++|++.+...+..+++++++
T Consensus 3 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ 82 (177)
T 1wms_A 3 GKSSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDC 82 (177)
T ss_dssp CCEEEEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGGHHHHGGGGTTCSE
T ss_pred CccceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEeCCCchhhhhhHHHHHhcCCE
Confidence 345789999999999999999999999998878788877665 4567788888999999999999999999999999999
Q ss_pred EEEEEeCCChhhHHhhhhhhHHHHHhhhC-----CCCCEEEEeeCcccccCccccccCCCc
Q 044772 97 FILAFSLISRPSYENISKKKWVPELRHYA-----PSVPIVLVGTKLDLRKDRQFHLDYPGA 152 (159)
Q Consensus 97 ~i~v~d~~~~~s~~~~~~~~~~~~i~~~~-----~~~piilv~nK~Dl~~~r~v~~~~~~~ 152 (159)
+++|||++++.++..+. .|+..+.... .++|+++|+||+|+. .++++.++.+.
T Consensus 83 ~i~v~d~~~~~s~~~~~--~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~-~~~~~~~~~~~ 140 (177)
T 1wms_A 83 CLLTFSVDDSQSFQNLS--NWKKEFIYYADVKEPESFPFVILGNKIDIS-ERQVSTEEAQA 140 (177)
T ss_dssp EEEEEETTCHHHHHTHH--HHHHHHHHHHTCSCTTTSCEEEEEECTTCS-SCSSCHHHHHH
T ss_pred EEEEEECcCHHHHHHHH--HHHHHHHHHccccccCCCcEEEEEECCccc-ccccCHHHHHH
Confidence 99999999999999987 8988887653 578999999999997 55665554433
No 55
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=99.95 E-value=5.6e-28 Score=170.39 Aligned_cols=129 Identities=32% Similarity=0.630 Sum_probs=111.8
Q ss_pred CcceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeee-EEEEEECCeEEEEEEEeCCCcccccccccccccCCcE
Q 044772 18 TATKFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNF-SANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADV 96 (159)
Q Consensus 18 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ 96 (159)
.....+||+|+|++|||||||+++|.++.+...+.++.+..+ ...+.+++..+.+.+||++|++.+...+..+++.+++
T Consensus 11 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 90 (195)
T 1x3s_A 11 DVLTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQG 90 (195)
T ss_dssp TEEEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCSHHHHHTTCCE
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHHcCCCCccCCCccceEEEEEEEEECCeEEEEEEEeCCCchhhhhhhHHHhccCCE
Confidence 456789999999999999999999999998888888876665 4566778888999999999999999999999999999
Q ss_pred EEEEEeCCChhhHHhhhhhhHHHHHhhhC--CCCCEEEEeeCcccccCccccccC
Q 044772 97 FILAFSLISRPSYENISKKKWVPELRHYA--PSVPIVLVGTKLDLRKDRQFHLDY 149 (159)
Q Consensus 97 ~i~v~d~~~~~s~~~~~~~~~~~~i~~~~--~~~piilv~nK~Dl~~~r~v~~~~ 149 (159)
+|+|||++++.++..+. .|+..+..+. .++|++||+||+|+. .+.+..++
T Consensus 91 ii~v~d~~~~~s~~~~~--~~~~~i~~~~~~~~~p~ilv~nK~Dl~-~~~~~~~~ 142 (195)
T 1x3s_A 91 VILVYDVTRRDTFVKLD--NWLNELETYCTRNDIVNMLVGNKIDKE-NREVDRNE 142 (195)
T ss_dssp EEEEEETTCHHHHHTHH--HHHHHHTTCCSCSCCEEEEEEECTTSS-SCCSCHHH
T ss_pred EEEEEECcCHHHHHHHH--HHHHHHHHhcCcCCCcEEEEEECCcCc-ccccCHHH
Confidence 99999999999999988 8999988765 579999999999994 34454443
No 56
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=99.95 E-value=1.4e-28 Score=174.84 Aligned_cols=136 Identities=32% Similarity=0.523 Sum_probs=103.1
Q ss_pred CCCCcceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeee-EEEEEECCeEEEEEEEeCCCcccccccccccccC
Q 044772 15 TTTTATKFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNF-SANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRG 93 (159)
Q Consensus 15 ~~~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~ 93 (159)
......+.+||+|+|++|||||||+++|+++.+...+.++.+..+ ...+.+++..+.+.+||++|++.+...+..+++.
T Consensus 21 ~~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ 100 (199)
T 2p5s_A 21 KSFSSQKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQERFRSIAKSYFRK 100 (199)
T ss_dssp -------CEEEEEESSTTSSHHHHHHHHHHCCCC----------CEEEEEEETTEEEEEEEEECTTCTTCHHHHHHHHHH
T ss_pred CCcCcCCCeEEEEECcCCCCHHHHHHHHHhCCCCccCCCCccceeEEEEEEECCEEEEEEEEECCCCcchhhhHHHHHhh
Confidence 334556789999999999999999999999998877778777655 4567788888999999999999999888999999
Q ss_pred CcEEEEEEeCCChhhHHhhhhhhHHHHHhhhC-CCCCEEEEeeCcccc------cCccccccCCCc
Q 044772 94 ADVFILAFSLISRPSYENISKKKWVPELRHYA-PSVPIVLVGTKLDLR------KDRQFHLDYPGA 152 (159)
Q Consensus 94 ~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~------~~r~v~~~~~~~ 152 (159)
++++|+|||++++.+|..+. .|+..+.... .++|++||+||+|+. ..+.+..++++.
T Consensus 101 ~d~iilv~d~~~~~s~~~~~--~~~~~i~~~~~~~~piilv~NK~Dl~~~~~~~~~~~v~~~~~~~ 164 (199)
T 2p5s_A 101 ADGVLLLYDVTCEKSFLNIR--EWVDMIEDAAHETVPIMLVGNKADIRDTAATEGQKCVPGHFGEK 164 (199)
T ss_dssp CSEEEEEEETTCHHHHHTHH--HHHHHHHHHC---CCEEEEEECGGGHHHHHHTTCCCCCHHHHHH
T ss_pred CCEEEEEEECCChHHHHHHH--HHHHHHHHhcCCCCCEEEEEECcccccccccccccccCHHHHHH
Confidence 99999999999999999988 8998888765 589999999999997 356665554443
No 57
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=99.95 E-value=6.6e-29 Score=178.53 Aligned_cols=135 Identities=35% Similarity=0.569 Sum_probs=113.5
Q ss_pred CCcceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeee-EEEEEECCe----------EEEEEEEeCCCcccccc
Q 044772 17 TTATKFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNF-SANVMVDGR----------TVNLGLWDTAGQEDYNR 85 (159)
Q Consensus 17 ~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~----------~~~~~i~D~~g~~~~~~ 85 (159)
....+.+||+|+|++|||||||+++|+++.+...+.++.+..+ ...+.+++. .+.+.+||++|++.+..
T Consensus 20 ~~~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~ 99 (217)
T 2f7s_A 20 GDYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFRS 99 (217)
T ss_dssp -CCSEEEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHHHH
T ss_pred CCcceeEEEEEECcCCCCHHHHHHHHhcCCCCcCCCCceeEEEEEEEEEECCccccccccCceeEEEEEEECCCcHhHHh
Confidence 3456789999999999999999999999998877777777655 335555554 78899999999999999
Q ss_pred cccccccCCcEEEEEEeCCChhhHHhhhhhhHHHHHhhhC--CCCCEEEEeeCcccccCccccccCCCcc
Q 044772 86 LRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYA--PSVPIVLVGTKLDLRKDRQFHLDYPGAY 153 (159)
Q Consensus 86 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~--~~~piilv~nK~Dl~~~r~v~~~~~~~~ 153 (159)
.+..+++.++++|+|||++++.+|..+. .|+..+.... .++|++||+||+|+.+.+.++.++++.+
T Consensus 100 ~~~~~~~~~d~iilV~D~~~~~s~~~~~--~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~ 167 (217)
T 2f7s_A 100 LTTAFFRDAMGFLLMFDLTSQQSFLNVR--NWMSQLQANAYCENPDIVLIGNKADLPDQREVNERQAREL 167 (217)
T ss_dssp HHHHHHTTCCEEEEEEETTCHHHHHHHH--HHHHTCCCCCTTTCCEEEEEEECTTCGGGCCSCHHHHHHH
T ss_pred HHHHHhcCCCEEEEEEECcCHHHHHHHH--HHHHHHHHhcCcCCCCEEEEEECCccccccccCHHHHHHH
Confidence 9999999999999999999999999888 8988887665 5899999999999988877766554443
No 58
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.95 E-value=2.3e-28 Score=173.27 Aligned_cols=133 Identities=26% Similarity=0.414 Sum_probs=114.5
Q ss_pred CcceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEE
Q 044772 18 TATKFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADVF 97 (159)
Q Consensus 18 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ 97 (159)
.....+||+++|++|||||||+++|.++.+...+.++.+..+...+.+++..+.+.+||++|++. ...+..++..++++
T Consensus 24 ~~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~-~~~~~~~~~~~d~i 102 (196)
T 2atv_A 24 AKSAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQATIDDEVVSMEILDTAGQED-TIQREGHMRWGEGF 102 (196)
T ss_dssp ---CCEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCC-CHHHHHHHHHCSEE
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHHhCCCCcccCCCCCceEEEEEEECCEEEEEEEEECCCCCc-ccchhhhhccCCEE
Confidence 34567999999999999999999999999988888888887777778888889999999999987 66778889999999
Q ss_pred EEEEeCCChhhHHhhhhhhHHHHHhhhC--CCCCEEEEeeCcccccCccccccCCCcc
Q 044772 98 ILAFSLISRPSYENISKKKWVPELRHYA--PSVPIVLVGTKLDLRKDRQFHLDYPGAY 153 (159)
Q Consensus 98 i~v~d~~~~~s~~~~~~~~~~~~i~~~~--~~~piilv~nK~Dl~~~r~v~~~~~~~~ 153 (159)
++|||++++++|..+. .|+..+.... .++|++||+||+|+.+.+.++.++++.+
T Consensus 103 ilv~D~~~~~s~~~~~--~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~ 158 (196)
T 2atv_A 103 VLVYDITDRGSFEEVL--PLKNILDEIKKPKNVTLILVGNKADLDHSRQVSTEEGEKL 158 (196)
T ss_dssp EEEEETTCHHHHHTHH--HHHHHHHHHHTTSCCCEEEEEECGGGGGGCCSCHHHHHHH
T ss_pred EEEEECcCHHHHHHHH--HHHHHHHHhhCCCCCcEEEEEECcccccccccCHHHHHHH
Confidence 9999999999999988 8888887653 5899999999999988888876655544
No 59
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=99.95 E-value=1.2e-28 Score=175.16 Aligned_cols=135 Identities=27% Similarity=0.407 Sum_probs=108.5
Q ss_pred CcceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccce-eeeeEEEEEECCeEEEEEEEeCCCcccccc-cccccccCCc
Q 044772 18 TATKFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTV-FDNFSANVMVDGRTVNLGLWDTAGQEDYNR-LRPLSYRGAD 95 (159)
Q Consensus 18 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~-~~~~~~~~~~ 95 (159)
.....+||+|+|++|||||||+++|.+..+...+.++. .+.+...+.+++..+.+.+||++|++.+.. ++..++..++
T Consensus 19 ~~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~d 98 (195)
T 3cbq_A 19 QKDGIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQGDAGGWLRDHCLQTGD 98 (195)
T ss_dssp ---CEEEEEEECSTTSSHHHHHHHTCCEECCGGGTTTSCTTEEEEEEEETTEEEEEEEECCCCCSGGGHHHHHHHHHHCS
T ss_pred CCCcEEEEEEECCCCCCHHHHHHHHHhccCCccCCCCcccceEEEEEEECCEEEEEEEEecCCCccchhhhHHHhhccCC
Confidence 34567999999999999999999997654433333333 333455677888899999999999987765 6777889999
Q ss_pred EEEEEEeCCChhhHHhhhhhhHHHHHhhhC--CCCCEEEEeeCcccccCccccccCCCccc
Q 044772 96 VFILAFSLISRPSYENISKKKWVPELRHYA--PSVPIVLVGTKLDLRKDRQFHLDYPGAYT 154 (159)
Q Consensus 96 ~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~--~~~piilv~nK~Dl~~~r~v~~~~~~~~~ 154 (159)
++|+|||++++.+|..+. .|+..+.... .++|++||+||+|+.+.+.++.++++.+|
T Consensus 99 ~~ilv~d~~~~~s~~~~~--~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~a 157 (195)
T 3cbq_A 99 AFLIVFSVTDRRSFSKVP--ETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLA 157 (195)
T ss_dssp EEEEEEETTCHHHHHTHH--HHHHHHHHHSTTSCCCEEEEEECTTCTTTCCSCHHHHHHHH
T ss_pred EEEEEEECCCHHHHHHHH--HHHHHHHHhcCCCCCCEEEEeechhccccCCcCHHHHHHHH
Confidence 999999999999999998 8998888765 48999999999999988888877665544
No 60
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=99.95 E-value=4.2e-28 Score=168.60 Aligned_cols=132 Identities=33% Similarity=0.543 Sum_probs=113.7
Q ss_pred cceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeee-EEEEEECCeEEEEEEEeCCCcccccccccccccCCcEE
Q 044772 19 ATKFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNF-SANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADVF 97 (159)
Q Consensus 19 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ 97 (159)
+.+.+||+++|++|+|||||+++|+++.+...+.++.+..+ ...+.+++..+.+.+||++|++.+...+..++.+++++
T Consensus 11 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~ 90 (179)
T 2y8e_A 11 PLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVA 90 (179)
T ss_dssp -CEEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGSHHHHHTCSEE
T ss_pred CCcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEECCCcHHHHHHHHHHhcCCCEE
Confidence 35679999999999999999999999998877777776544 45667788888999999999999999999999999999
Q ss_pred EEEEeCCChhhHHhhhhhhHHHHHhhhC-CCCCEEEEeeCcccccCccccccCCCc
Q 044772 98 ILAFSLISRPSYENISKKKWVPELRHYA-PSVPIVLVGTKLDLRKDRQFHLDYPGA 152 (159)
Q Consensus 98 i~v~d~~~~~s~~~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~r~v~~~~~~~ 152 (159)
++|||++++.+|..+. .|+..+.... .++|+++|+||+|+.+.++++.++++.
T Consensus 91 i~v~d~~~~~s~~~~~--~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~ 144 (179)
T 2y8e_A 91 VVVYDITNTNSFHQTS--KWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGER 144 (179)
T ss_dssp EEEEETTCHHHHHTHH--HHHHHHHHHHTTSSEEEEEEECGGGGGGCCSCHHHHHH
T ss_pred EEEEECCCHHHHHHHH--HHHHHHHHhcCCCCcEEEEEECCcccccCcCCHHHHHH
Confidence 9999999999999988 8988887654 589999999999998877776655443
No 61
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=99.95 E-value=6.1e-28 Score=166.20 Aligned_cols=129 Identities=25% Similarity=0.355 Sum_probs=90.9
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEEEE
Q 044772 22 FIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAF 101 (159)
Q Consensus 22 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 101 (159)
.+||+++|++|||||||+++|.+..+. ...++.+..+...+.+++..+.+.+||++|++.+...+..++..++++++||
T Consensus 2 ~~ki~~vG~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (166)
T 3q72_A 2 VYKVLLLGAPGVGKSALARIFGGVEDG-PEAEAAGHTYDRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIVY 80 (166)
T ss_dssp CCEEEEEESTTSSHHHHHHHHCCC-----------CEEEEEEEETTEEEEEEEEECC---------------CCEEEEEE
T ss_pred eEEEEEECCCCCCHHHHHHHHcCcccc-CCCCccccceEEEEEECCEEEEEEEEECCCCccchhhhhhhhhhCCEEEEEE
Confidence 579999999999999999999876654 3345556666667778899999999999999999999999999999999999
Q ss_pred eCCChhhHHhhhhhhHHHHHhhhC--CCCCEEEEeeCcccccCccccccCCCcc
Q 044772 102 SLISRPSYENISKKKWVPELRHYA--PSVPIVLVGTKLDLRKDRQFHLDYPGAY 153 (159)
Q Consensus 102 d~~~~~s~~~~~~~~~~~~i~~~~--~~~piilv~nK~Dl~~~r~v~~~~~~~~ 153 (159)
|++++++|..+. .|+..+.... +++|+++|+||+|+.+.+.++.++++.+
T Consensus 81 d~~~~~s~~~~~--~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~ 132 (166)
T 3q72_A 81 SVTDKGSFEKAS--ELRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEGRAC 132 (166)
T ss_dssp ETTCHHHHHHHH--HHHHHHHHCC---CCCEEEEEECTTCCSSCCSCHHHHHHH
T ss_pred ECCCHHHHHHHH--HHHHHHHHhcCCCCCCEEEEEeccccccccccCHHHHHHH
Confidence 999999999998 8888887653 5899999999999998888877665543
No 62
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.95 E-value=3.3e-28 Score=167.98 Aligned_cols=129 Identities=28% Similarity=0.470 Sum_probs=111.3
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEEE
Q 044772 21 KFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADVFILA 100 (159)
Q Consensus 21 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v 100 (159)
..+||+++|++|+|||||+++|.++.+...+.++.+..+......++..+.+.+||++|++.+...+..++..++++++|
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~v 81 (172)
T 2erx_A 2 NDYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFILV 81 (172)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEEEEEEEETTEEEEEEEEECCSCSSCHHHHHHHHHHCSEEEEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccccEEEEEEECCEEEEEEEEECCCchhhHHHHHHhcccCCEEEEE
Confidence 46899999999999999999999999887888888777776777788888999999999999988888999999999999
Q ss_pred EeCCChhhHHhhhhhhHHHHHhhhC---CCCCEEEEeeCcccccCccccccCCC
Q 044772 101 FSLISRPSYENISKKKWVPELRHYA---PSVPIVLVGTKLDLRKDRQFHLDYPG 151 (159)
Q Consensus 101 ~d~~~~~s~~~~~~~~~~~~i~~~~---~~~piilv~nK~Dl~~~r~v~~~~~~ 151 (159)
||++++.++..+. .|+..+.... ++.|+++|+||+|+...+++..++++
T Consensus 82 ~d~~~~~~~~~~~--~~~~~i~~~~~~~~~~pii~v~nK~Dl~~~~~v~~~~~~ 133 (172)
T 2erx_A 82 YSITSRQSLEELK--PIYEQICEIKGDVESIPIMLVGNKCDESPSREVQSSEAE 133 (172)
T ss_dssp EETTCHHHHHTTH--HHHHHHHHHHC---CCCEEEEEECGGGGGGCCSCHHHHH
T ss_pred EECcCHHHHHHHH--HHHHHHHHHhCCCCCCCEEEEEEccccccccccCHHHHH
Confidence 9999999999887 7877776653 57999999999999887777654433
No 63
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=99.95 E-value=6.5e-28 Score=167.23 Aligned_cols=131 Identities=27% Similarity=0.360 Sum_probs=99.3
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccc--ccccccccccCCcEEE
Q 044772 21 KFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQED--YNRLRPLSYRGADVFI 98 (159)
Q Consensus 21 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~--~~~~~~~~~~~~~~~i 98 (159)
..+||+++|++|||||||+++|.+..+...+.+...+.+...+.+++..+.+.+||++|++. +......++..+++++
T Consensus 3 ~~~ki~i~G~~~vGKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~~~i 82 (175)
T 2nzj_A 3 ALYRVVLLGDPGVGKTSLASLFAGKQERDLHEQLGEDVYERTLTVDGEDTTLVVVDTWEAEKLDKSWSQESCLQGGSAYV 82 (175)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHCC-----CCCSSSSEEEEEEEETTEEEEEEEECCC-------CHHHHHTTTSCSEEE
T ss_pred eEEEEEEECCCCccHHHHHHHHhcCCCccccCccccceeEEEEEECCEEEEEEEEecCCCCccchhhhHHhhcccCCEEE
Confidence 46899999999999999999999888765444333333455677888889999999999987 4556677889999999
Q ss_pred EEEeCCChhhHHhhhhhhHHHHHhhhC--CCCCEEEEeeCcccccCccccccCCCcc
Q 044772 99 LAFSLISRPSYENISKKKWVPELRHYA--PSVPIVLVGTKLDLRKDRQFHLDYPGAY 153 (159)
Q Consensus 99 ~v~d~~~~~s~~~~~~~~~~~~i~~~~--~~~piilv~nK~Dl~~~r~v~~~~~~~~ 153 (159)
+|||++++.+|..+. .|+..+.... .+.|+++|+||+|+.+.++++.++++.+
T Consensus 83 ~v~d~~~~~s~~~~~--~~~~~l~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~ 137 (175)
T 2nzj_A 83 IVYSIADRGSFESAS--ELRIQLRRTHQADHVPIILVGNKADLARCREVSVEEGRAC 137 (175)
T ss_dssp EEEETTCHHHHHHHH--HHHHHHHHCC----CCEEEEEECTTCTTTCCSCHHHHHHH
T ss_pred EEEECCCHHHHHHHH--HHHHHHHHhhccCCCCEEEEEEChhhccccccCHHHHHHH
Confidence 999999999999988 8888887653 4899999999999998888876665443
No 64
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=99.95 E-value=8.7e-28 Score=168.93 Aligned_cols=132 Identities=33% Similarity=0.529 Sum_probs=113.5
Q ss_pred cceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeeeE--EEEEECCe---------EEEEEEEeCCCcccccccc
Q 044772 19 ATKFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFS--ANVMVDGR---------TVNLGLWDTAGQEDYNRLR 87 (159)
Q Consensus 19 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~--~~~~~~~~---------~~~~~i~D~~g~~~~~~~~ 87 (159)
....+||+|+|++|||||||+++|.++.+...+.++.+..+. ..+..++. .+.+.+||++|++.+...+
T Consensus 8 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~ 87 (195)
T 3bc1_A 8 YDYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLERFRSLT 87 (195)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEECTTSCCCSSCCCEEEEEEEEEECCSGGGHHHH
T ss_pred cceeEEEEEECCCCCCHHHHHHHHhcCCCCcCcccccceeeeeEEEEEecCCcccccccCcEEEEEEEeCCCcHHHHHHH
Confidence 467899999999999999999999999988777888776654 34455554 7889999999999999999
Q ss_pred cccccCCcEEEEEEeCCChhhHHhhhhhhHHHHHhhhC--CCCCEEEEeeCcccccCccccccCCCc
Q 044772 88 PLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYA--PSVPIVLVGTKLDLRKDRQFHLDYPGA 152 (159)
Q Consensus 88 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~--~~~piilv~nK~Dl~~~r~v~~~~~~~ 152 (159)
..++++++++|+|||++++.++..+. .|+..+.... .++|+++|+||+|+.+.+.+..++.+.
T Consensus 88 ~~~~~~~d~~i~v~d~~~~~s~~~~~--~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~ 152 (195)
T 3bc1_A 88 TAFFRDAMGFLLLFDLTNEQSFLNVR--NWISQLQMHAYSENPDIVLCGNKSDLEDQRAVKEEEARE 152 (195)
T ss_dssp HHTTTTCSEEEEEEETTCHHHHHTHH--HHHHHHHHHSSSSSCCEEEEEECTTCGGGCCSCHHHHHH
T ss_pred HHHHcCCCEEEEEEECCCHHHHHHHH--HHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHH
Confidence 99999999999999999999999988 8999888776 589999999999998877776555443
No 65
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=99.95 E-value=1.6e-28 Score=170.95 Aligned_cols=132 Identities=27% Similarity=0.482 Sum_probs=110.9
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeee-EEEEEECC-eEEEEEEEeCCCcccccccccccccCCcEE
Q 044772 20 TKFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNF-SANVMVDG-RTVNLGLWDTAGQEDYNRLRPLSYRGADVF 97 (159)
Q Consensus 20 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~-~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ 97 (159)
.+.+||+++|++|||||||+++|.++.+...+.++.+..+ ...+.+++ ..+.+.+||++|++.+...+..++++++++
T Consensus 4 ~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~ 83 (178)
T 2hxs_A 4 MRQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGGKMLDKYIYGAQGV 83 (178)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHGGGTTHHHHHTTTSSEEEEEEEETTTEEEEEEEEECTTCCTTCTTHHHHHTTCSEE
T ss_pred CceEEEEEECcCCCCHHHHHHHHHhCcCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCCccccchhhHHHhhCCEE
Confidence 4679999999999999999999999888777777776444 45666765 678999999999999999999999999999
Q ss_pred EEEEeCCChhhHHhhhhhhHHHHHhhhC---CCCC-EEEEeeCcccccCccccccCCCcc
Q 044772 98 ILAFSLISRPSYENISKKKWVPELRHYA---PSVP-IVLVGTKLDLRKDRQFHLDYPGAY 153 (159)
Q Consensus 98 i~v~d~~~~~s~~~~~~~~~~~~i~~~~---~~~p-iilv~nK~Dl~~~r~v~~~~~~~~ 153 (159)
++|||++++.+|..+. .|+..+..+. .+.| ++||+||+|+.+.+.++.++++.+
T Consensus 84 i~v~d~~~~~s~~~~~--~~~~~i~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~ 141 (178)
T 2hxs_A 84 LLVYDITNYQSFENLE--DWYTVVKKVSEESETQPLVALVGNKIDLEHMRTIKPEKHLRF 141 (178)
T ss_dssp EEEEETTCHHHHHTHH--HHHHHHHHHHHHHTCCCEEEEEEECGGGGGGCSSCHHHHHHH
T ss_pred EEEEECCCHHHHHHHH--HHHHHHHHHhcccCCCCeEEEEEEccccccccccCHHHHHHH
Confidence 9999999999999988 8988887653 2455 899999999988887776655443
No 66
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=99.95 E-value=6.8e-28 Score=166.41 Aligned_cols=130 Identities=27% Similarity=0.404 Sum_probs=98.7
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccce-eeeeEEEEEECCeEEEEEEEeCCCcccccc-cccccccCCcEEEE
Q 044772 22 FIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTV-FDNFSANVMVDGRTVNLGLWDTAGQEDYNR-LRPLSYRGADVFIL 99 (159)
Q Consensus 22 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~-~~~~~~~~~~~~i~ 99 (159)
.+||+++|++|||||||+++|.+..+...+.++. ...+...+.+++..+.+.+||++|++.+.. .+..++++++++++
T Consensus 2 ~~ki~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~ 81 (169)
T 3q85_A 2 VFKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQGDAGGWLQDHCLQTGDAFLI 81 (169)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCC------------CEEEEEEEETTEEEEEEEECCCCC--------CHHHHHCSEEEE
T ss_pred cEEEEEECCCCCCHHHHHHHHHhccCcccccCCCcCCeeeEEEEECCeEEEEEEEECCCccccchhhhhhhhccCCEEEE
Confidence 5799999999999999999999777654444433 344456777889899999999999988876 67778899999999
Q ss_pred EEeCCChhhHHhhhhhhHHHHHhhhCC--CCCEEEEeeCcccccCccccccCCCcc
Q 044772 100 AFSLISRPSYENISKKKWVPELRHYAP--SVPIVLVGTKLDLRKDRQFHLDYPGAY 153 (159)
Q Consensus 100 v~d~~~~~s~~~~~~~~~~~~i~~~~~--~~piilv~nK~Dl~~~r~v~~~~~~~~ 153 (159)
|||++++++|..+. .|+..+..... ++|+++|+||+|+.+.+.++.++++.+
T Consensus 82 v~d~~~~~s~~~~~--~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~ 135 (169)
T 3q85_A 82 VFSVTDRRSFSKVP--ETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHL 135 (169)
T ss_dssp EEETTCHHHHHTHH--HHHHHHHHHSTTSCCCEEEEEECTTCGGGCCSCHHHHHHH
T ss_pred EEECCChHHHHHHH--HHHHHHHhcccCCCCCEEEEeeCcchhhcccCCHHHHHHH
Confidence 99999999999998 89888887764 899999999999998888887766544
No 67
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=99.95 E-value=8.7e-28 Score=169.36 Aligned_cols=137 Identities=21% Similarity=0.291 Sum_probs=102.1
Q ss_pred CCCCCCCcCCCCCCCCCCcceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCc
Q 044772 1 MTSTTASALSSSTTTTTTATKFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQ 80 (159)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~ 80 (159)
|+++.++...+..+......+.+||+|+|++|||||||+++|.++.+...+.+|.+..+.. +..+ .+.+.+||++|+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~-~~~~--~~~~~l~Dt~G~ 77 (188)
T 1zd9_A 1 MGSSHHHHHHSSGLVPRGSKEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRK-ITKG--NVTIKLWDIGGQ 77 (188)
T ss_dssp ------------------CCEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEE-EEET--TEEEEEEEECCS
T ss_pred CCcccccccccccccccCCCCccEEEEECCCCCCHHHHHHHHHcCCCCCccCCCCceeEEE-EEeC--CEEEEEEECCCC
Confidence 6677766666666666677789999999999999999999999999887778887766542 3333 467999999999
Q ss_pred ccccccccccccCCcEEEEEEeCCChhhHHhhhhhhHHHHHhhh--CCCCCEEEEeeCcccccC
Q 044772 81 EDYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHY--APSVPIVLVGTKLDLRKD 142 (159)
Q Consensus 81 ~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~--~~~~piilv~nK~Dl~~~ 142 (159)
+.+...+..++.+++++|+|||++++++|..+. .|+..+... ..+.|++||+||+|+.+.
T Consensus 78 ~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~--~~~~~~~~~~~~~~~piilv~NK~Dl~~~ 139 (188)
T 1zd9_A 78 PRFRSMWERYCRGVSAIVYMVDAADQEKIEASK--NELHNLLDKPQLQGIPVLVLGNKRDLPGA 139 (188)
T ss_dssp HHHHTTHHHHHTTCSEEEEEEETTCGGGHHHHH--HHHHHHHTCGGGTTCCEEEEEECTTSTTC
T ss_pred HhHHHHHHHHHccCCEEEEEEECCCHHHHHHHH--HHHHHHHhCcccCCCCEEEEEECCCCccC
Confidence 999999999999999999999999999999888 777776654 258999999999999754
No 68
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=99.95 E-value=9.3e-28 Score=165.58 Aligned_cols=128 Identities=30% Similarity=0.620 Sum_probs=104.6
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeee-EEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEE
Q 044772 21 KFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNF-SANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL 99 (159)
Q Consensus 21 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~ 99 (159)
..+||+++|++|+|||||+++|.++.+...+.++.+..+ ...+..++..+.+.+||++|++.+...+..++++++++++
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~ 81 (170)
T 1g16_A 2 SIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGIIL 81 (170)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESSSCEEEEEEECCTTGGGTSCCCHHHHTTEEEEEE
T ss_pred CceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCChhhhhhHHHHhccCCEEEE
Confidence 468999999999999999999999998877788877665 4466677778899999999999999999999999999999
Q ss_pred EEeCCChhhHHhhhhhhHHHHHhhhC-CCCCEEEEeeCcccccCccccccCCC
Q 044772 100 AFSLISRPSYENISKKKWVPELRHYA-PSVPIVLVGTKLDLRKDRQFHLDYPG 151 (159)
Q Consensus 100 v~d~~~~~s~~~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~r~v~~~~~~ 151 (159)
|||++++.+|..+. .|+..+.... .+.|+++|+||+|+ ..+.+..++++
T Consensus 82 v~d~~~~~s~~~~~--~~~~~i~~~~~~~~piilv~nK~Dl-~~~~~~~~~~~ 131 (170)
T 1g16_A 82 VYDITDERTFTNIK--QWFKTVNEHANDEAQLLLVGNKSDM-ETRVVTADQGE 131 (170)
T ss_dssp EEETTCHHHHHTHH--HHHHHHHHHSCTTCEEEEEEECTTC-TTCCSCHHHHH
T ss_pred EEECCCHHHHHHHH--HHHHHHHHhcCCCCcEEEEEECccC-CcCccCHHHHH
Confidence 99999999999888 8998888776 58999999999999 45555544433
No 69
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=99.95 E-value=1.9e-28 Score=174.45 Aligned_cols=135 Identities=32% Similarity=0.417 Sum_probs=84.6
Q ss_pred CcceeeEEEEEcCCCCCHHHHHHHHhcC--CCCCCcccceeee-eEEEEEECCe--EEEEEEEeCCCccccccccccccc
Q 044772 18 TATKFIKCVTVRDGAVGKTCLLISYTGN--TFPTDYVPTVFDN-FSANVMVDGR--TVNLGLWDTAGQEDYNRLRPLSYR 92 (159)
Q Consensus 18 ~~~~~~ki~vvG~~~~GKSsli~~l~~~--~~~~~~~~t~~~~-~~~~~~~~~~--~~~~~i~D~~g~~~~~~~~~~~~~ 92 (159)
.....+||+|+|++|||||||+++|.++ .+...+.+|.+.. +...+.+++. .+.+.+||++|++.+...+..+++
T Consensus 16 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~ 95 (208)
T 2yc2_C 16 TATLRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSDLYKEQISQYWN 95 (208)
T ss_dssp SEEEEEEEEEC----------------------------------CEEEECTTSSEEEEEEEEETTTTHHHHHHHSTTCC
T ss_pred ccccceEEEEECCCCCCHHHHHHHHHhCCCcccCCCCCccceEEEEEEEEECCcccEEEEEEEECCCcHHHHHHHHHHHh
Confidence 3467899999999999999999999998 7777778887643 3556677776 889999999999999999999999
Q ss_pred CCcEEEEEEeCCChhhHHhhhhhhHHHHHhhhCC----CCCEEEEeeCccccc-CccccccCCCccc
Q 044772 93 GADVFILAFSLISRPSYENISKKKWVPELRHYAP----SVPIVLVGTKLDLRK-DRQFHLDYPGAYT 154 (159)
Q Consensus 93 ~~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~~----~~piilv~nK~Dl~~-~r~v~~~~~~~~~ 154 (159)
+++++|+|||++++.+|..+. .|+..+..... ++|++||+||+|+.+ .+.++.++++.++
T Consensus 96 ~~d~~i~v~d~~~~~s~~~~~--~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~v~~~~~~~~~ 160 (208)
T 2yc2_C 96 GVYYAILVFDVSSMESFESCK--AWFELLKSARPDRERPLRAVLVANKTDLPPQRHQVRLDMAQDWA 160 (208)
T ss_dssp CCCEEEEEEETTCHHHHHHHH--HHHHHHHHHCSCTTSCCEEEEEEECC-------CCCHHHHHHHH
T ss_pred hCcEEEEEEECCCHHHHHHHH--HHHHHHHHhhcccccCCcEEEEEECcccchhhccCCHHHHHHHH
Confidence 999999999999999999998 99999988764 899999999999988 7888766655543
No 70
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=99.95 E-value=2.3e-28 Score=173.79 Aligned_cols=134 Identities=31% Similarity=0.655 Sum_probs=111.8
Q ss_pred cceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeee-EEEEEECCeEEEEEEEeCCCcccccccccccccCCcEE
Q 044772 19 ATKFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNF-SANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADVF 97 (159)
Q Consensus 19 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ 97 (159)
....+||+|+|++|||||||+++|+++.+...+.++.+..+ ...+..++..+.+.+||++|++.+...+..+++++|++
T Consensus 30 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ 109 (199)
T 3l0i_B 30 YDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGI 109 (199)
T ss_dssp CSEEEEEEEECCTTSCCTTTTTSSBCCCCCCHHHHHHCCSEEEEEEEETTEEEEEEEECCTTCTTCCCCSCC--CCCSEE
T ss_pred cCcceEEEEECCCCCCHHHHHHHHhcCCCCCCcCCcccceEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhhcCCEE
Confidence 45689999999999999999999999888877777776555 45667888889999999999999999999999999999
Q ss_pred EEEEeCCChhhHHhhhhhhHHHHHhhhC-CCCCEEEEeeCcccccCccccccCCCccc
Q 044772 98 ILAFSLISRPSYENISKKKWVPELRHYA-PSVPIVLVGTKLDLRKDRQFHLDYPGAYT 154 (159)
Q Consensus 98 i~v~d~~~~~s~~~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~r~v~~~~~~~~~ 154 (159)
|+|||++++.+|..+. .|+..+.... .+.|++||+||+|+.+.+.++.++++.++
T Consensus 110 i~v~d~~~~~s~~~~~--~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~ 165 (199)
T 3l0i_B 110 IVVYDVTDQESFNNVK--QWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFA 165 (199)
T ss_dssp EECC-CCCSHHHHHHH--HHHHHHHSCC-CCSEEEEC-CCSSCC--CCCCSCC-CHHH
T ss_pred EEEEECCCHHHHHHHH--HHHHHHHHhccCCCCEEEEEECccCCccccCCHHHHHHHH
Confidence 9999999999999998 8999988765 47999999999999998888887777654
No 71
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=99.95 E-value=1.8e-27 Score=166.88 Aligned_cols=126 Identities=34% Similarity=0.568 Sum_probs=108.6
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEE
Q 044772 20 TKFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL 99 (159)
Q Consensus 20 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~ 99 (159)
...+||+++|++|||||||+++|.++.+...+.++....+......++..+.+.+||++|++.+...+..++..++++++
T Consensus 2 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~ 81 (189)
T 4dsu_A 2 STEYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLC 81 (189)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHHSSCCCCCCTTCCEEEEEEEEETTEEEEEEEEECCCC---CTTHHHHHHHCSEEEE
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCchheEEEEEEECCcEEEEEEEECCCcHHHHHHHHHHHhcCCEEEE
Confidence 46799999999999999999999999998888888887777777889999999999999999999999999999999999
Q ss_pred EEeCCChhhHHhhhhhhHHHHHhhhC--CCCCEEEEeeCcccccCcccccc
Q 044772 100 AFSLISRPSYENISKKKWVPELRHYA--PSVPIVLVGTKLDLRKDRQFHLD 148 (159)
Q Consensus 100 v~d~~~~~s~~~~~~~~~~~~i~~~~--~~~piilv~nK~Dl~~~r~v~~~ 148 (159)
|||++++.+|..+. .|+..+.... .+.|+++|+||+|+.+ +.+..+
T Consensus 82 v~d~~~~~s~~~~~--~~~~~~~~~~~~~~~p~i~v~nK~Dl~~-~~~~~~ 129 (189)
T 4dsu_A 82 VFAINNTKSFEDIH--HYREQIKRVKDSEDVPMVLVGNKCDLPS-RTVDTK 129 (189)
T ss_dssp EEETTCHHHHHHHH--HHHHHHHHHTTCSCCCEEEEEECTTSSS-CSSCHH
T ss_pred EEECCCHHHHHHHH--HHHHHHHHhcCCCCCcEEEEEECccCcc-cccCHH
Confidence 99999999999988 8888887754 4899999999999973 333333
No 72
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=99.95 E-value=1.4e-27 Score=166.33 Aligned_cols=131 Identities=31% Similarity=0.590 Sum_probs=96.3
Q ss_pred cceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeee-EEEEEEC-CeEEEEEEEeCCCcccccccccccccCCcE
Q 044772 19 ATKFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNF-SANVMVD-GRTVNLGLWDTAGQEDYNRLRPLSYRGADV 96 (159)
Q Consensus 19 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~-~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ 96 (159)
....+||+++|++|+|||||+++|+++.+...+.++.+..+ ...+.++ +..+.+.+||++|++.+...+..+++++++
T Consensus 5 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 84 (182)
T 1ky3_A 5 KKNILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRGADC 84 (182)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC----------CCSTTCCE
T ss_pred cCceEEEEEECCCCCCHHHHHHHHHhCcCCcccCCccceEEEEEEEEEcCCcEEEEEEEECCCChHhhhhhHHHhhcCCE
Confidence 35679999999999999999999999998888778776554 4455555 556789999999999999999999999999
Q ss_pred EEEEEeCCChhhHHhhhhhhHHHHHhhhC-----CCCCEEEEeeCcccc-cCccccccCCC
Q 044772 97 FILAFSLISRPSYENISKKKWVPELRHYA-----PSVPIVLVGTKLDLR-KDRQFHLDYPG 151 (159)
Q Consensus 97 ~i~v~d~~~~~s~~~~~~~~~~~~i~~~~-----~~~piilv~nK~Dl~-~~r~v~~~~~~ 151 (159)
+|+|||++++.+|..+. .|+..+.... .++|+++|+||+|+. ..+.+..++++
T Consensus 85 ~i~v~d~~~~~s~~~~~--~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~v~~~~~~ 143 (182)
T 1ky3_A 85 CVLVYDVTNASSFENIK--SWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKSAQ 143 (182)
T ss_dssp EEEEEETTCHHHHHTHH--HHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSCHHHHH
T ss_pred EEEEEECCChHHHHHHH--HHHHHHHHHhcccCcCCCcEEEEEECCccccccccCCHHHHH
Confidence 99999999999999998 8988877653 579999999999995 44555544433
No 73
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.95 E-value=4.3e-27 Score=168.19 Aligned_cols=131 Identities=31% Similarity=0.607 Sum_probs=109.6
Q ss_pred CCcceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeee-EEEEEECCeEEEEEEEeCCCcccccccccccccCCc
Q 044772 17 TTATKFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNF-SANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGAD 95 (159)
Q Consensus 17 ~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~ 95 (159)
......+||+|+|++|||||||+++|++..+...+.++.+..+ ...+.+++..+.+.+||++|++.+...+..++..++
T Consensus 15 ~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d 94 (213)
T 3cph_A 15 KSYDSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTITTAYYRGAM 94 (213)
T ss_dssp -----CEEEEEECSTTSSHHHHHHHHHHCCCCCSSSCCCSCCEEEEEEEETTEEEEEEEECCTTGGGGTCCCHHHHTTCS
T ss_pred CCCCcceEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCC
Confidence 3456679999999999999999999999998877778777665 346677888889999999999999999999999999
Q ss_pred EEEEEEeCCChhhHHhhhhhhHHHHHhhhCC-CCCEEEEeeCcccccCccccccCC
Q 044772 96 VFILAFSLISRPSYENISKKKWVPELRHYAP-SVPIVLVGTKLDLRKDRQFHLDYP 150 (159)
Q Consensus 96 ~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~~-~~piilv~nK~Dl~~~r~v~~~~~ 150 (159)
++|+|||++++.+|..+. .|+..+..... +.|++||+||+|+ ..+.+..+++
T Consensus 95 ~ii~v~d~~~~~s~~~~~--~~~~~i~~~~~~~~piilv~nK~Dl-~~~~~~~~~~ 147 (213)
T 3cph_A 95 GIILVYDVTDERTFTNIK--QWFKTVNEHANDEAQLLLVGNKSDM-ETRVVTADQG 147 (213)
T ss_dssp EEEEEEETTCHHHHHTHH--HHHHHHHHHTTTCSEEEEEEECTTC-SSCCSCHHHH
T ss_pred EEEEEEECCCHHHHHHHH--HHHHHHHHhcCCCCCEEEEEECCCC-cccccCHHHH
Confidence 999999999999999988 89988887764 7999999999999 4555554443
No 74
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=99.95 E-value=3.2e-27 Score=168.19 Aligned_cols=128 Identities=34% Similarity=0.646 Sum_probs=108.5
Q ss_pred cceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeee-EEEEEECCeEEEEEEEeCCCcccccccccccccCCcEE
Q 044772 19 ATKFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNF-SANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADVF 97 (159)
Q Consensus 19 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ 97 (159)
....+||+|+|++|||||||+++|.++.+...+.++.+..+ ...+.+++..+.+.+||++|++.+...+..++++++++
T Consensus 5 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 84 (207)
T 1vg8_A 5 KKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCC 84 (207)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSCCGGGTTCSEE
T ss_pred cCcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHhHHHHHhCCcEE
Confidence 35679999999999999999999999998888888776554 44666778888999999999999999999999999999
Q ss_pred EEEEeCCChhhHHhhhhhhHHHHHhhhC-----CCCCEEEEeeCcccccCccccccC
Q 044772 98 ILAFSLISRPSYENISKKKWVPELRHYA-----PSVPIVLVGTKLDLRKDRQFHLDY 149 (159)
Q Consensus 98 i~v~d~~~~~s~~~~~~~~~~~~i~~~~-----~~~piilv~nK~Dl~~~r~v~~~~ 149 (159)
|+|||++++.+|..+. .|+..+.... .+.|++||+||+|+. .+.+..++
T Consensus 85 i~v~d~~~~~s~~~~~--~~~~~~~~~~~~~~~~~~piilv~nK~Dl~-~~~~~~~~ 138 (207)
T 1vg8_A 85 VLVFDVTAPNTFKTLD--SWRDEFLIQASPRDPENFPFVVLGNKIDLE-NRQVATKR 138 (207)
T ss_dssp EEEEETTCHHHHHTHH--HHHHHHHHHHCCSSGGGSCEEEEEECTTSS-CCCSCHHH
T ss_pred EEEEECCCHHHHHHHH--HHHHHHHHhcccccCCCCcEEEEEECCCCc-ccccCHHH
Confidence 9999999999999987 8888877654 478999999999997 45554433
No 75
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=99.94 E-value=3.8e-27 Score=161.44 Aligned_cols=124 Identities=35% Similarity=0.563 Sum_probs=109.0
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEEEE
Q 044772 22 FIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAF 101 (159)
Q Consensus 22 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 101 (159)
.+||+++|++|+|||||+++|.++.+...+.++.+..+...+..++..+.+.+||++|++.+...+..++..++++++||
T Consensus 3 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~ 82 (166)
T 2ce2_X 3 EYKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVF 82 (166)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCSSCCHHHHHHHHHCSEEEEEE
T ss_pred eeEEEEECCCCCCHHHHHHHHHhCcCccccCCccceEEEEEEEECCEEEEEEEEECCCchhhhHHHHHhhccCCEEEEEE
Confidence 58999999999999999999999998888888887777777778888899999999999999888889999999999999
Q ss_pred eCCChhhHHhhhhhhHHHHHhhhCC--CCCEEEEeeCcccccCcccccc
Q 044772 102 SLISRPSYENISKKKWVPELRHYAP--SVPIVLVGTKLDLRKDRQFHLD 148 (159)
Q Consensus 102 d~~~~~s~~~~~~~~~~~~i~~~~~--~~piilv~nK~Dl~~~r~v~~~ 148 (159)
|++++.++..+. .|+..+..... +.|+++|+||+|+.. +.+..+
T Consensus 83 d~~~~~~~~~~~--~~~~~i~~~~~~~~~p~iiv~nK~Dl~~-~~~~~~ 128 (166)
T 2ce2_X 83 AINNTKSFEDIH--QYREQIKRVKDSDDVPMVLVGNKSDLAA-RTVESR 128 (166)
T ss_dssp ETTCHHHHHHHH--HHHHHHHHHHTCSCCCEEEEEECTTCSC-CCSCHH
T ss_pred ECCCHHHHHHHH--HHHHHHHHhcCCCCCcEEEEEEchhhhh-cccCHH
Confidence 999999999987 89888877653 899999999999976 444433
No 76
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=99.94 E-value=5.1e-27 Score=166.04 Aligned_cols=131 Identities=28% Similarity=0.498 Sum_probs=108.5
Q ss_pred cceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeee-EEEEEECCeE----------------------------
Q 044772 19 ATKFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNF-SANVMVDGRT---------------------------- 69 (159)
Q Consensus 19 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~---------------------------- 69 (159)
....+||+|+|++|+|||||+++|++..+...+.++.+..+ ...+..++..
T Consensus 4 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (208)
T 3clv_A 4 KKSSYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNINSINDDNNVIITNQH 83 (208)
T ss_dssp CCSSEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSCEEEEEEEETTC------------------------------
T ss_pred CCcceEEEEECCCCCCHHHHHHHHHhCcCCCCcCccccceeEEEEEEecCcccccccccccccccccccccccccccccc
Confidence 45679999999999999999999999998888888876555 3345555543
Q ss_pred ---------EEEEEEeCCCcccccccccccccCCcEEEEEEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCcccc
Q 044772 70 ---------VNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLR 140 (159)
Q Consensus 70 ---------~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~ 140 (159)
+.+.+||+||++.+...+..+++.++++++|||++++.++..+. .|+..+..... .|+++|+||+| .
T Consensus 84 ~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~--~~~~~i~~~~~-~piilv~NK~D-~ 159 (208)
T 3clv_A 84 NNYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAK--TWVNQLKISSN-YIIILVANKID-K 159 (208)
T ss_dssp -CCCTTTCEEEEEEEECTTGGGCTTTHHHHHTTCSEEEEEEETTCHHHHHHHH--HHHHHHHHHSC-CEEEEEEECTT-C
T ss_pred ccccCccceeEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHH--HHHHHHHhhCC-CcEEEEEECCC-c
Confidence 78999999999999999999999999999999999999999888 89998887664 99999999999 5
Q ss_pred cCccccccCCCcc
Q 044772 141 KDRQFHLDYPGAY 153 (159)
Q Consensus 141 ~~r~v~~~~~~~~ 153 (159)
..+.+..++.+.+
T Consensus 160 ~~~~~~~~~~~~~ 172 (208)
T 3clv_A 160 NKFQVDILEVQKY 172 (208)
T ss_dssp C-CCSCHHHHHHH
T ss_pred ccccCCHHHHHHH
Confidence 5666666554443
No 77
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=99.94 E-value=3.8e-27 Score=169.95 Aligned_cols=125 Identities=30% Similarity=0.518 Sum_probs=110.3
Q ss_pred CCcceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeee-EEEEEECCeEEEEEEEeCCCcccccccccccccCCc
Q 044772 17 TTATKFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNF-SANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGAD 95 (159)
Q Consensus 17 ~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~ 95 (159)
......+||+++|.+|||||||+++|+.+.+...+.++.+..+ ......++..+.+.+||++|++.+...+..++.+++
T Consensus 10 ~~~~~~~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ 89 (221)
T 3gj0_A 10 GEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQ 89 (221)
T ss_dssp TCCCCEEEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEEEEEEETTEEEEEEEEEECSGGGTSCCCHHHHTTCC
T ss_pred CCcccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCChHHHhHHHHHHHhcCC
Confidence 3456779999999999999999999888777777777776555 446677888899999999999999999999999999
Q ss_pred EEEEEEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCcccccCc
Q 044772 96 VFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKDR 143 (159)
Q Consensus 96 ~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~r 143 (159)
++|+|||++++.+|..+. .|+..+....+++|++||+||+|+.+.+
T Consensus 90 ~~i~v~d~~~~~s~~~~~--~~~~~~~~~~~~~p~ilv~nK~Dl~~~~ 135 (221)
T 3gj0_A 90 CAIIMFDVTSRVTYKNVP--NWHRDLVRVCENIPIVLCGNKVDIKDRK 135 (221)
T ss_dssp EEEEEEETTCHHHHHTHH--HHHHHHHHHSTTCCEEEEEECTTSSSCS
T ss_pred EEEEEEECCCHHHHHHHH--HHHHHHHHhCCCCCEEEEEECCcccccc
Confidence 999999999999999998 9999999988899999999999997644
No 78
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.94 E-value=2.2e-27 Score=167.95 Aligned_cols=128 Identities=27% Similarity=0.471 Sum_probs=109.5
Q ss_pred cceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEE
Q 044772 19 ATKFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADVFI 98 (159)
Q Consensus 19 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i 98 (159)
....+||+++|++|||||||+++|.++.+...+.++.+..+......++..+.+.+||++|++.+...+..++..+++++
T Consensus 5 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 84 (199)
T 2gf0_A 5 QSNDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTYRQVISCDKSVCTLQITDTTGSHQFPAMQRLSISKGHAFI 84 (199)
T ss_dssp CCCCEEEEEEECTTSSHHHHHHHHHHSCCCCTTSCCCCEEEEEEEEETTEEEEEEEEECCGGGSCHHHHHHHHHHCSEEE
T ss_pred CCCeeEEEEECCCCCcHHHHHHHHHcCCCCCcccCccccceeEEEEECCEEEEEEEEeCCChHHhHHHHHHhhccCCEEE
Confidence 34679999999999999999999999998888888888777767777888899999999999999988899999999999
Q ss_pred EEEeCCChhhHHhhhhhhHHHHHhhhC---CCCCEEEEeeCcccccCccccccC
Q 044772 99 LAFSLISRPSYENISKKKWVPELRHYA---PSVPIVLVGTKLDLRKDRQFHLDY 149 (159)
Q Consensus 99 ~v~d~~~~~s~~~~~~~~~~~~i~~~~---~~~piilv~nK~Dl~~~r~v~~~~ 149 (159)
+|||++++.+|..+. .|+..+.... ++.|++||+||+|+.+ +.+..++
T Consensus 85 ~v~d~~~~~s~~~~~--~~~~~i~~~~~~~~~~piilv~nK~Dl~~-~~~~~~~ 135 (199)
T 2gf0_A 85 LVFSVTSKQSLEELG--PIYKLIVQIKGSVEDIPVMLVGNKCDETQ-REVDTRE 135 (199)
T ss_dssp EEEETTCHHHHHTTH--HHHHHHHHHHSCGGGSCEEEEEECTTCSS-CSSCHHH
T ss_pred EEEECcCHHHHHHHH--HHHHHHHHHhcCCCCCCEEEEEECccCCc-cccCHHH
Confidence 999999999999888 6776665543 4789999999999975 4444433
No 79
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=99.94 E-value=7.5e-27 Score=165.22 Aligned_cols=125 Identities=14% Similarity=0.181 Sum_probs=98.0
Q ss_pred CCCCCCcceeeEEEEEcCCCCCHHHHHHHHhcCCCCC-CcccceeeeeEEEEEECCeEEEEEEEeCCCcccccccccccc
Q 044772 13 TTTTTTATKFIKCVTVRDGAVGKTCLLISYTGNTFPT-DYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRLRPLSY 91 (159)
Q Consensus 13 ~~~~~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~ 91 (159)
.....++...+||+|+|++|||||||+++|+++.+.. .+.+|.+..+. .+ +...+.+.+||++|++.+...+..++
T Consensus 8 ~~~~~~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~~t~~~~~~-~~--~~~~~~~~i~Dt~G~~~~~~~~~~~~ 84 (199)
T 4bas_A 8 HHHMGQSKTKLQVVMCGLDNSGKTTIINQVKPAQSSSKHITATVGYNVE-TF--EKGRVAFTVFDMGGAKKFRGLWETYY 84 (199)
T ss_dssp --------CEEEEEEECCTTSCHHHHHHHHSCCC----CCCCCSSEEEE-EE--EETTEEEEEEEECCSGGGGGGGGGGC
T ss_pred cccccCCCCCcEEEEECCCCCCHHHHHHHHhcCCCcccccccccceeEE-EE--EeCCEEEEEEECCCCHhHHHHHHHHH
Confidence 3444567788999999999999999999999999887 77888774333 23 33446799999999999999999999
Q ss_pred cCCcEEEEEEeCCChhhHHhhhhhhHHHHHhhhC---------CCCCEEEEeeCcccccC
Q 044772 92 RGADVFILAFSLISRPSYENISKKKWVPELRHYA---------PSVPIVLVGTKLDLRKD 142 (159)
Q Consensus 92 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~---------~~~piilv~nK~Dl~~~ 142 (159)
++++++|+|||++++++|..+. .|+..+.... .++|++||+||+|+...
T Consensus 85 ~~~d~ii~v~D~~~~~s~~~~~--~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~ 142 (199)
T 4bas_A 85 DNIDAVIFVVDSSDHLRLCVVK--SEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGA 142 (199)
T ss_dssp TTCSEEEEEEETTCGGGHHHHH--HHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTC
T ss_pred hcCCEEEEEEECCcHHHHHHHH--HHHHHHHhChhhhhcccccCCCCEEEEEECcCCCCC
Confidence 9999999999999999999998 7777765541 27999999999999876
No 80
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=99.94 E-value=1.7e-26 Score=162.79 Aligned_cols=136 Identities=18% Similarity=0.256 Sum_probs=98.4
Q ss_pred CCCCCCCcCCCCCCCCCCcceeeEEEEEcCCCCCHHHHHHHHhcCC-CCCCcccceeeeeEEEEEECCeEEEEEEEeCCC
Q 044772 1 MTSTTASALSSSTTTTTTATKFIKCVTVRDGAVGKTCLLISYTGNT-FPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAG 79 (159)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKSsli~~l~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g 79 (159)
|++++++.+.+. +......+.+||+++|++|||||||+++|.++. +...+.+|.+.. ...+.+++ +.+.+||++|
T Consensus 1 ~~~~~~~~~~~~-~~~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~t~~~~-~~~~~~~~--~~~~l~Dt~G 76 (190)
T 2h57_A 1 MGSSHHHHHHSS-GLVPRGSKEVHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIGFS-IEKFKSSS--LSFTVFDMSG 76 (190)
T ss_dssp ---------------------CEEEEEEECTTSSHHHHHHHTSCGGGCCSSCCCCSSEE-EEEEECSS--CEEEEEEECC
T ss_pred CCcccccccccc-CcccCCCCccEEEEECCCCCCHHHHHHHHhcCCCCCCCcCCcccee-EEEEEECC--EEEEEEECCC
Confidence 555555544333 333345678999999999999999999999887 566677776632 33445554 6799999999
Q ss_pred cccccccccccccCCcEEEEEEeCCChhhHHhhhhhhHHHHHhhhC----CCCCEEEEeeCcccccC
Q 044772 80 QEDYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYA----PSVPIVLVGTKLDLRKD 142 (159)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~----~~~piilv~nK~Dl~~~ 142 (159)
++.+...+..++.+++++|+|||++++.+|..+. .|+..+.... .+.|++||+||+|+.+.
T Consensus 77 ~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~--~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 141 (190)
T 2h57_A 77 QGRYRNLWEHYYKEGQAIIFVIDSSDRLRMVVAK--EELDTLLNHPDIKHRRIPILFFANKMDLRDA 141 (190)
T ss_dssp STTTGGGGGGGGGGCSEEEEEEETTCHHHHHHHH--HHHHHHHHSTTTTTSCCCEEEEEECTTSTTC
T ss_pred CHHHHHHHHHHHhcCCEEEEEEECCCHHHHHHHH--HHHHHHHhChhhccCCCeEEEEEeCcCcccC
Confidence 9999999999999999999999999999999988 7777776543 47999999999999754
No 81
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=99.94 E-value=2.4e-26 Score=160.95 Aligned_cols=135 Identities=17% Similarity=0.252 Sum_probs=97.7
Q ss_pred CCCCCCCcCCCCCCCCCCcceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCc
Q 044772 1 MTSTTASALSSSTTTTTTATKFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQ 80 (159)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~ 80 (159)
|+++.++.+. ..+......+.+||+++|++|||||||+++|.++.+ ..+.++.+..+ ..+.+++ +.+.+||++|+
T Consensus 1 ~~~~~~~~~~-~~~~~~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~-~~~~~t~~~~~-~~~~~~~--~~~~i~Dt~G~ 75 (181)
T 2h17_A 1 MGSSHHHHHH-SSGLVPRGSQEHKVIIVGLDNAGKTTILYQFSMNEV-VHTSPTIGSNV-EEIVINN--TRFLMWDIGGQ 75 (181)
T ss_dssp ---------------------CEEEEEEEETTSSHHHHHHHHHTTSC-EEEECCSSSSC-EEEEETT--EEEEEEEESSS
T ss_pred CCcccccccc-cCCccCCCCceeEEEEECCCCCCHHHHHHHHhcCCC-CccCCcCceee-EEEEECC--EEEEEEECCCC
Confidence 4555544433 344445566789999999999999999999999887 45566665443 3445555 67999999999
Q ss_pred ccccccccccccCCcEEEEEEeCCChhhHHhhhhhhHHHHHhhh--CCCCCEEEEeeCcccccC
Q 044772 81 EDYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHY--APSVPIVLVGTKLDLRKD 142 (159)
Q Consensus 81 ~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~--~~~~piilv~nK~Dl~~~ 142 (159)
+.+...+..+++++|++++|||++++++|..+. .|+..+... ..+.|+++|+||+|+.+.
T Consensus 76 ~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~--~~~~~~~~~~~~~~~piilv~NK~Dl~~~ 137 (181)
T 2h17_A 76 ESLRSSWNTYYTNTEFVIVVVDSTDRERISVTR--EELYKMLAHEDLRKAGLLIFANKQDVKEC 137 (181)
T ss_dssp GGGTCGGGGGGTTCCEEEEEEETTCTTTHHHHH--HHHHHHHTCGGGTTCEEEEEEECTTSTTC
T ss_pred HhHHHHHHHHhccCCEEEEEEECCCHHHHHHHH--HHHHHHHhChhhCCCeEEEEEECCCcccC
Confidence 999999999999999999999999999999888 777777654 368999999999999763
No 82
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=99.94 E-value=2.1e-27 Score=168.51 Aligned_cols=141 Identities=16% Similarity=0.168 Sum_probs=95.9
Q ss_pred cCCCCCCCCCCcceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeee---EEEEEEC-CeEEEEEEEeCCCcccc
Q 044772 8 ALSSSTTTTTTATKFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNF---SANVMVD-GRTVNLGLWDTAGQEDY 83 (159)
Q Consensus 8 ~~~~~~~~~~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~---~~~~~~~-~~~~~~~i~D~~g~~~~ 83 (159)
+.++.........+.+||+++|++|||||||++++.+. +... ++.+..+ .....+. +..+.+++||++|++.|
T Consensus 6 ~~~~~~~~~~~~~~~~ki~~vG~~~vGKTsLi~~l~~~-~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~ 82 (196)
T 3llu_A 6 HHSSGRENLYFQGSKPRILLMGLRRSGKSSIQKVVFHK-MSPN--ETLFLESTNKIYKDDISNSSFVNFQIWDFPGQMDF 82 (196)
T ss_dssp --------------CCEEEEEESTTSSHHHHHHHHHSC-CCGG--GGGGCCCCCSCEEEEECCTTSCCEEEEECCSSCCT
T ss_pred cccCCCCCCcccCcceEEEEECCCCCCHHHHHHHHHhc-CCCc--ceeeeccccceeeeeccCCCeeEEEEEECCCCHHH
Confidence 33444555567778999999999999999999987764 3333 2322222 2222333 56678999999999998
Q ss_pred cccc---cccccCCcEEEEEEeCCCh--hhHHhhhhhhHHHHHhhhCCCCCEEEEeeCccccc-------CccccccCCC
Q 044772 84 NRLR---PLSYRGADVFILAFSLISR--PSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRK-------DRQFHLDYPG 151 (159)
Q Consensus 84 ~~~~---~~~~~~~~~~i~v~d~~~~--~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~-------~r~v~~~~~~ 151 (159)
.... ..++++++++|+|||++++ +++..+. .|+..+....+++|++||+||+|+.. .|.++.++++
T Consensus 83 ~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~--~~l~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~v~~~~~~ 160 (196)
T 3llu_A 83 FDPTFDYEMIFRGTGALIYVIDAQDDYMEALTRLH--ITVSKAYKVNPDMNFEVFIHKVDGLSDDHKIETQRDIHQRAND 160 (196)
T ss_dssp TCTTCCHHHHHHTCSEEEEEEETTSCCHHHHHHHH--HHHHHHHHHCTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHH
T ss_pred HhhhhhcccccccCCEEEEEEECCCchHHHHHHHH--HHHHHHHhcCCCCcEEEEEeccccCchhhhhHHHhHHHHHHHH
Confidence 7766 7899999999999999987 5666665 78887766678999999999999754 5666655544
Q ss_pred cc
Q 044772 152 AY 153 (159)
Q Consensus 152 ~~ 153 (159)
.+
T Consensus 161 ~~ 162 (196)
T 3llu_A 161 DL 162 (196)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 83
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=99.94 E-value=2.2e-26 Score=163.11 Aligned_cols=132 Identities=25% Similarity=0.416 Sum_probs=102.2
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcC--CCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccc-ccccccccccCCcE
Q 044772 20 TKFIKCVTVRDGAVGKTCLLISYTGN--TFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQED-YNRLRPLSYRGADV 96 (159)
Q Consensus 20 ~~~~ki~vvG~~~~GKSsli~~l~~~--~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~-~~~~~~~~~~~~~~ 96 (159)
...+||+++|++|||||||+++|.+. .+...+.++..+.+...+.+++..+.+.+||+.|++. +..+...+++.+++
T Consensus 4 ~~~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Dt~~~~~~~~~~~~~~~~~~~~ 83 (192)
T 2cjw_A 4 MTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGDA 83 (192)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHHSCCC----GGGCTTEEEEEEEETTEEEEEEEECCCCC----CTTGGGHHHHCSE
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCcCCcCccccccceeEEEEEEEECCeEEEEEEEEeccCcchhhhHHHhhcccCCE
Confidence 34689999999999999999999963 3444444443444556777889889999999999865 45566778888999
Q ss_pred EEEEEeCCChhhHHhhhhhhHHHHHhhhC--CCCCEEEEeeCcccccCccccccCCCcc
Q 044772 97 FILAFSLISRPSYENISKKKWVPELRHYA--PSVPIVLVGTKLDLRKDRQFHLDYPGAY 153 (159)
Q Consensus 97 ~i~v~d~~~~~s~~~~~~~~~~~~i~~~~--~~~piilv~nK~Dl~~~r~v~~~~~~~~ 153 (159)
+++|||++++++|..+. .|+..+.... ++.|+++|+||+|+...|.+..++++.+
T Consensus 84 ~i~v~dv~~~~s~~~~~--~~~~~l~~~~~~~~~piilV~NK~Dl~~~r~v~~~~~~~~ 140 (192)
T 2cjw_A 84 YLIVYSITDRASFEKAS--ELRIQLRRARQTEDIPIILVGNKSDLVRXREVSVSEGRAX 140 (192)
T ss_dssp EEEEEETTCHHHHHHHH--HHHHHHHHHTTTSCCCEEEEEECTTCGGGCCSCHHHHHHH
T ss_pred EEEEEECCCHHHHHHHH--HHHHHHHHhhCCCCCeEEEEEechhhhccccccHHHHHHH
Confidence 99999999999999988 8887777653 4799999999999988888877665543
No 84
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=99.94 E-value=5.2e-27 Score=168.70 Aligned_cols=133 Identities=28% Similarity=0.453 Sum_probs=106.4
Q ss_pred CcceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeeeEE-EEEE-CCeEEEEEEEeCCCcccccccccccccCCc
Q 044772 18 TATKFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSA-NVMV-DGRTVNLGLWDTAGQEDYNRLRPLSYRGAD 95 (159)
Q Consensus 18 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~-~~~~-~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~ 95 (159)
.....+||+|+|++|||||||+++|+++.+...+.++.+..+.. .... ++..+.+.+||++|++.+...+..++.+++
T Consensus 7 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d 86 (218)
T 4djt_A 7 RRELTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEKKAVLKDVYYIGAS 86 (218)
T ss_dssp ---CEEEEEEECCTTSSHHHHHCBCTTCSTTCEEETTTTEEEEEEEEEBTTSCEEEEEEEEECSGGGTSCCCHHHHTTCS
T ss_pred cccCccEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeeEEEEEEeCCCcEEEEEEEecCCchhhchHHHHHhhcCC
Confidence 44678999999999999999999999988887777777655533 3333 344588999999999999999999999999
Q ss_pred EEEEEEeCCChhhHHhhhhhhHHHHHhhhCC-CCCEEEEeeCcccccCccccccCCCc
Q 044772 96 VFILAFSLISRPSYENISKKKWVPELRHYAP-SVPIVLVGTKLDLRKDRQFHLDYPGA 152 (159)
Q Consensus 96 ~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~~-~~piilv~nK~Dl~~~r~v~~~~~~~ 152 (159)
++|+|||++++.+|..+. .|+..+..... +.|++||+||+|+.+.+.+..++.+.
T Consensus 87 ~~i~v~d~~~~~s~~~~~--~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~ 142 (218)
T 4djt_A 87 GAILFFDVTSRITCQNLA--RWVKEFQAVVGNEAPIVVCANKIDIKNRQKISKKLVME 142 (218)
T ss_dssp EEEEEEETTCHHHHHTHH--HHHHHHHHHHCSSSCEEEEEECTTCC----CCHHHHHH
T ss_pred EEEEEEeCCCHHHHHHHH--HHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHH
Confidence 999999999999999998 89988887654 59999999999998877776655443
No 85
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=99.89 E-value=2.4e-28 Score=174.17 Aligned_cols=135 Identities=65% Similarity=1.111 Sum_probs=116.4
Q ss_pred cceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEE
Q 044772 19 ATKFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADVFI 98 (159)
Q Consensus 19 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i 98 (159)
..+.+||+++|++|||||||+++|.++.+...+.++.+..+...+..++..+.+.+||++|++.+...+..++.++++++
T Consensus 27 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii 106 (204)
T 3th5_A 27 QGQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFL 106 (204)
Confidence 35789999999999999999999999998888888887777666677777888999999999999999999999999999
Q ss_pred EEEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCcccccCc------------cccccCCCccc
Q 044772 99 LAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKDR------------QFHLDYPGAYT 154 (159)
Q Consensus 99 ~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~r------------~v~~~~~~~~~ 154 (159)
+|||++++.+|..+.. .|+..+....++.|+++|+||+|+.+.+ .+..++++.++
T Consensus 107 lv~D~~~~~s~~~~~~-~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~ 173 (204)
T 3th5_A 107 ICFSLVSPASFENVRA-KWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMA 173 (204)
Confidence 9999999999998865 7888888776789999999999997654 56656655554
No 86
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=99.93 E-value=5.4e-26 Score=172.47 Aligned_cols=122 Identities=69% Similarity=1.223 Sum_probs=111.4
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEE
Q 044772 20 TKFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL 99 (159)
Q Consensus 20 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~ 99 (159)
...+||+++|.+|+|||||++++.++.+...+.++.+..+...+.+++..+.+.+||++|++.+...+..++.+++++++
T Consensus 153 ~~~~~i~i~G~~~~GKssli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~ 232 (332)
T 2wkq_A 153 KELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLI 232 (332)
T ss_dssp TTCEEEEEEESTTSSHHHHHHHHHHSCCCCSCCCCSEEEEEEEEEETTEEEEEEEEEECCCGGGTTTGGGGCTTCSEEEE
T ss_pred cceeEEEEECCCCCChHHHHHHHHhCCCCcccCCcccceeEEEEEECCEEEEEEEEeCCCchhhhHHHHHhccCCCEEEE
Confidence 34589999999999999999999999998888888888887777889999999999999999999999999999999999
Q ss_pred EEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCcccccC
Q 044772 100 AFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKD 142 (159)
Q Consensus 100 v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~ 142 (159)
|||++++.+|..+.. .|+..+....+++|+++|+||+|+...
T Consensus 233 v~d~~~~~s~~~~~~-~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 274 (332)
T 2wkq_A 233 CFSLVSPASFHHVRA-KWYPEVRHHCPNTPIILVGTKLDLRDD 274 (332)
T ss_dssp EEETTCHHHHHHHHH-THHHHHHHHCTTSCEEEEEECHHHHTC
T ss_pred EEeCCCHHHHHHHHH-HHHHHHHhhCCCCcEEEEEEchhcccc
Confidence 999999999998875 799988888779999999999999764
No 87
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=99.93 E-value=6.7e-27 Score=164.91 Aligned_cols=123 Identities=27% Similarity=0.295 Sum_probs=97.0
Q ss_pred CCcceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcc-----------cceeeeeEE-EE-EECCeEEEEEEEeCCCcccc
Q 044772 17 TTATKFIKCVTVRDGAVGKTCLLISYTGNTFPTDYV-----------PTVFDNFSA-NV-MVDGRTVNLGLWDTAGQEDY 83 (159)
Q Consensus 17 ~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~-----------~t~~~~~~~-~~-~~~~~~~~~~i~D~~g~~~~ 83 (159)
......+||+++|++|||||||++.+. +.+...+. +|.+..+.. .+ ..++..+.+.+||++|++.+
T Consensus 9 ~~~~~~~ki~vvG~~~~GKssL~~~l~-~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~ 87 (198)
T 3t1o_A 9 ANREINFKIVYYGPGLSGKTTNLKWIY-SKVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQVFY 87 (198)
T ss_dssp TTTEEEEEEEEECSTTSSHHHHHHHHH-HTSCGGGBCCCEEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEECCSCCSC
T ss_pred hccccccEEEEECCCCCCHHHHHHHHH-hhccccccccccccccccccceeeeecccccccccCCceEEEEEeCCChHHH
Confidence 345678999999999999999996554 45554433 344433321 22 45667889999999999999
Q ss_pred cccccccccCCcEEEEEEeCC------ChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCcccccC
Q 044772 84 NRLRPLSYRGADVFILAFSLI------SRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKD 142 (159)
Q Consensus 84 ~~~~~~~~~~~~~~i~v~d~~------~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~ 142 (159)
...+..++++++++|+|||++ +.++|..+. .|+..+.....++|++||+||+|+.+.
T Consensus 88 ~~~~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~--~~l~~~~~~~~~~piilv~NK~Dl~~~ 150 (198)
T 3t1o_A 88 NASRKLILRGVDGIVFVADSAPNRLRANAESMRNMR--ENLAEYGLTLDDVPIVIQVNKRDLPDA 150 (198)
T ss_dssp SHHHHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHH--HHHHHTTCCTTSSCEEEEEECTTSTTC
T ss_pred HHHHHHHHhcCCEEEEEEECCcchhhHhHHHHHHHH--HHHHhhccccCCCCEEEEEEchhcccc
Confidence 999999999999999999999 556777776 888888655678999999999999764
No 88
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=99.93 E-value=4.9e-26 Score=161.92 Aligned_cols=116 Identities=19% Similarity=0.240 Sum_probs=91.4
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEE
Q 044772 20 TKFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL 99 (159)
Q Consensus 20 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~ 99 (159)
.+.+||+++|++|||||||+++|.++.+. .+.+|.+... ..+.+++ +.+.+||++|++.+...+..++++++++++
T Consensus 23 ~~~~ki~lvG~~~vGKSsLi~~l~~~~~~-~~~~t~~~~~-~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 98 (198)
T 1f6b_A 23 KKTGKLVFLGLDNAGKTTLLHMLKDDRLG-QHVPTLHPTS-EELTIAG--MTFTTFDLGGHIQARRVWKNYLPAINGIVF 98 (198)
T ss_dssp TCCEEEEEEEETTSSHHHHHHHHSCC-------CCCCCSC-EEEEETT--EEEEEEEECC----CCGGGGGGGGCSEEEE
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhcCCCC-ccCCCCCcee-EEEEECC--EEEEEEECCCcHhhHHHHHHHHhcCCEEEE
Confidence 45689999999999999999999988864 4566666543 4556666 679999999999999999999999999999
Q ss_pred EEeCCChhhHHhhhhhhHHHHHhhh--CCCCCEEEEeeCccccc
Q 044772 100 AFSLISRPSYENISKKKWVPELRHY--APSVPIVLVGTKLDLRK 141 (159)
Q Consensus 100 v~d~~~~~s~~~~~~~~~~~~i~~~--~~~~piilv~nK~Dl~~ 141 (159)
|||++++++|..+. .|+..+... ..++|+++|+||+|+.+
T Consensus 99 v~D~~~~~s~~~~~--~~~~~~~~~~~~~~~piilv~NK~Dl~~ 140 (198)
T 1f6b_A 99 LVDCADHERLLESK--EELDSLMTDETIANVPILILGNKIDRPE 140 (198)
T ss_dssp EEETTCGGGHHHHH--HHHHHHHTCGGGTTSCEEEEEECTTSTT
T ss_pred EEECCCHHHHHHHH--HHHHHHHhCcccCCCcEEEEEECCCccc
Confidence 99999999999988 888877654 25899999999999975
No 89
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=99.93 E-value=2.7e-25 Score=157.03 Aligned_cols=116 Identities=18% Similarity=0.264 Sum_probs=97.1
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEE
Q 044772 20 TKFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL 99 (159)
Q Consensus 20 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~ 99 (159)
.+.+||+++|++|||||||+++|.++.+. .+.+|.+.. ...+.+++ +.+.+||++|++.+...+..++++++++++
T Consensus 21 ~~~~ki~~vG~~~vGKSsli~~l~~~~~~-~~~~t~~~~-~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 96 (190)
T 1m2o_B 21 NKHGKLLFLGLDNAGKTTLLHMLKNDRLA-TLQPTWHPT-SEELAIGN--IKFTTFDLGGHIQARRLWKDYFPEVNGIVF 96 (190)
T ss_dssp ---CEEEEEESTTSSHHHHHHHHHHSCCC-CCCCCCSCE-EEEEEETT--EEEEEEECCCSGGGTTSGGGGCTTCCEEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCC-ccccCCCCC-eEEEEECC--EEEEEEECCCCHHHHHHHHHHHhcCCEEEE
Confidence 45679999999999999999999988874 456666553 34556666 679999999999999999999999999999
Q ss_pred EEeCCChhhHHhhhhhhHHHHHhhh--CCCCCEEEEeeCccccc
Q 044772 100 AFSLISRPSYENISKKKWVPELRHY--APSVPIVLVGTKLDLRK 141 (159)
Q Consensus 100 v~d~~~~~s~~~~~~~~~~~~i~~~--~~~~piilv~nK~Dl~~ 141 (159)
|||++++++|..+. .|+..+... ..+.|+++|+||+|+.+
T Consensus 97 v~d~~~~~s~~~~~--~~~~~~~~~~~~~~~piilv~NK~Dl~~ 138 (190)
T 1m2o_B 97 LVDAADPERFDEAR--VELDALFNIAELKDVPFVILGNKIDAPN 138 (190)
T ss_dssp EEETTCGGGHHHHH--HHHHHHHTCGGGTTCCEEEEEECTTSTT
T ss_pred EEECCChHHHHHHH--HHHHHHHcchhhcCCCEEEEEECCCCcC
Confidence 99999999999988 788777654 25899999999999975
No 90
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=99.93 E-value=8.4e-27 Score=163.90 Aligned_cols=123 Identities=24% Similarity=0.397 Sum_probs=92.8
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcC--CCCCCcccceeeeeEE-EEEE---CCeEEEEEEEeCCCcccccccccccccCCc
Q 044772 22 FIKCVTVRDGAVGKTCLLISYTGN--TFPTDYVPTVFDNFSA-NVMV---DGRTVNLGLWDTAGQEDYNRLRPLSYRGAD 95 (159)
Q Consensus 22 ~~ki~vvG~~~~GKSsli~~l~~~--~~~~~~~~t~~~~~~~-~~~~---~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~ 95 (159)
.+||+++|++|||||||+++|.+. .+...+.+|.+..+.. .+.. ++..+.+.+||++|++.+...+..++.+++
T Consensus 2 ~~kv~ivG~~gvGKStLl~~l~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ 81 (184)
T 2zej_A 2 RMKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREEFYSTHPHFMTQRA 81 (184)
T ss_dssp -CEEEEESCTTSSHHHHHHHHTCC-----------CSEEEEEEEC---------CEEEEEEECSHHHHHTTSHHHHHHSE
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCccCCCcceeccEEeEEeeeccccCCCCceEEEEEecCCCHHHHHhhHHHccCCc
Confidence 479999999999999999999985 4556667777655432 2222 235678999999999999988889999999
Q ss_pred EEEEEEeCCCh-hhHHhhhhhhHHHHHhhhCCCCCEEEEeeCcccccCcccc
Q 044772 96 VFILAFSLISR-PSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKDRQFH 146 (159)
Q Consensus 96 ~~i~v~d~~~~-~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~r~v~ 146 (159)
++++|||++++ .+|..+. .|+..+....++.|++|||||+|+.+.+.++
T Consensus 82 ~~i~v~d~~~~~~s~~~~~--~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~ 131 (184)
T 2zej_A 82 LYLAVYDLSKGQAEVDAMK--PWLFNIKARASSSPVILVGTHLDVSDEKQRK 131 (184)
T ss_dssp EEEEEEEGGGCHHHHHTHH--HHHHHHHHHCTTCEEEEEEECGGGCCHHHHH
T ss_pred EEEEEEeCCcchhHHHHHH--HHHHHHHhhCCCCcEEEEEECCCcccchhhH
Confidence 99999999987 5788887 9999988777789999999999998777654
No 91
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=99.93 E-value=1e-25 Score=154.72 Aligned_cols=114 Identities=18% Similarity=0.264 Sum_probs=94.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEEEEe
Q 044772 23 IKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFS 102 (159)
Q Consensus 23 ~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d 102 (159)
+||+++|++|||||||+++|.++.+.. +.||.+.. ...+.. ..+.+.+||++|++.+...+..++++++++++|||
T Consensus 1 ~ki~~~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~-~~~~~~--~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d 76 (164)
T 1r8s_A 1 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFN-VETVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVD 76 (164)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHCSSC-CCCCSSCC-EEEEEC--SSCEEEEEECCCCGGGHHHHHHHTTTCSEEEEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCcCc-ccCcCcee-EEEEEE--CCEEEEEEEcCCChhhHHHHHHHhccCCEEEEEEE
Confidence 589999999999999999999888764 46666632 223333 34679999999999999888999999999999999
Q ss_pred CCChhhHHhhhhhhHHHHHhhh--CCCCCEEEEeeCcccccC
Q 044772 103 LISRPSYENISKKKWVPELRHY--APSVPIVLVGTKLDLRKD 142 (159)
Q Consensus 103 ~~~~~s~~~~~~~~~~~~i~~~--~~~~piilv~nK~Dl~~~ 142 (159)
++++++|..+. .|+..+... ..+.|+++|+||+|+.+.
T Consensus 77 ~~~~~s~~~~~--~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 116 (164)
T 1r8s_A 77 SNDRERVNEAR--EELMRMLAEDELRDAVLLVFANKQDLPNA 116 (164)
T ss_dssp TTCGGGHHHHH--HHHHHHHTCGGGTTCEEEEEEECTTSTTC
T ss_pred CCCHHHHHHHH--HHHHHHHhchhhcCCeEEEEEECcCCcCC
Confidence 99999999888 787777653 258999999999999765
No 92
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=99.93 E-value=1.1e-24 Score=152.83 Aligned_cols=119 Identities=18% Similarity=0.280 Sum_probs=99.4
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEE
Q 044772 20 TKFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL 99 (159)
Q Consensus 20 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~ 99 (159)
.+.+||+++|++|||||||+++|.++. ...+.+|.+... ..+..++ +.+.+||++|++.+...+..+++++|++++
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~~~-~~~~~~t~~~~~-~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~ 91 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNGED-VDTISPTLGFNI-KTLEHRG--FKLNIWDVGGQKSLRSYWRNYFESTDGLIW 91 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTTCC-CSSCCCCSSEEE-EEEEETT--EEEEEEEECCSHHHHTTGGGGCTTCSEEEE
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCC-CCcccccCccce-EEEEECC--EEEEEEECCCCHhHHHHHHHHhcCCCEEEE
Confidence 567999999999999999999999888 666777766433 3444554 679999999999999999999999999999
Q ss_pred EEeCCChhhHHhhhhhhHHHHHhhh--CCCCCEEEEeeCcccccCcc
Q 044772 100 AFSLISRPSYENISKKKWVPELRHY--APSVPIVLVGTKLDLRKDRQ 144 (159)
Q Consensus 100 v~d~~~~~s~~~~~~~~~~~~i~~~--~~~~piilv~nK~Dl~~~r~ 144 (159)
|||++++.+|..+. .|+..+... ..+.|+++|+||+|+.+.+.
T Consensus 92 v~d~~~~~s~~~~~--~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~ 136 (186)
T 1ksh_A 92 VVDSADRQRMQDCQ--RELQSLLVEERLAGATLLIFANKQDLPGALS 136 (186)
T ss_dssp EEETTCGGGHHHHH--HHHHHHHTCGGGTTCEEEEEEECTTSTTCCC
T ss_pred EEECcCHHHHHHHH--HHHHHHHhChhcCCCcEEEEEeCccCCCCCC
Confidence 99999999999888 777777654 25899999999999976543
No 93
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=99.92 E-value=5.6e-25 Score=156.30 Aligned_cols=133 Identities=38% Similarity=0.633 Sum_probs=110.9
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeee-EEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEE
Q 044772 20 TKFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNF-SANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADVFI 98 (159)
Q Consensus 20 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i 98 (159)
...+||+++|++|||||||+++|.+..+...+.++.+..+ ...+.+++..+.+.+||++|++.+...+..++..+++++
T Consensus 3 ~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i 82 (199)
T 2f9l_A 3 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGAL 82 (199)
T ss_dssp SEEEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEEE
T ss_pred cceEEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHHhcCCEEE
Confidence 3568999999999999999999999998877777776555 457778998899999999999999888888999999999
Q ss_pred EEEeCCChhhHHhhhhhhHHHHHhhhC-CCCCEEEEeeCcccccCccccccCCCccc
Q 044772 99 LAFSLISRPSYENISKKKWVPELRHYA-PSVPIVLVGTKLDLRKDRQFHLDYPGAYT 154 (159)
Q Consensus 99 ~v~d~~~~~s~~~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~r~v~~~~~~~~~ 154 (159)
+|||+.+..+|..+. .|+..+.... .+.|+++++||+|+.+.+.++.+++++++
T Consensus 83 ~v~d~~~~~s~~~~~--~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~ 137 (199)
T 2f9l_A 83 LVYDIAKHLTYENVE--RWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFA 137 (199)
T ss_dssp EEEETTCHHHHHTHH--HHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHH
T ss_pred EEEECcCHHHHHHHH--HHHHHHHHhcCCCCeEEEEEECcccccccCcCHHHHHHHH
Confidence 999999999998887 8888776654 57899999999999887777766555443
No 94
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.92 E-value=4.6e-25 Score=155.04 Aligned_cols=117 Identities=17% Similarity=0.267 Sum_probs=95.6
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEE
Q 044772 20 TKFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL 99 (159)
Q Consensus 20 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~ 99 (159)
.+.+||+++|++|||||||+++|.++.+. .+.+|.+... ..+.+++ +.+.+||++|++.+...+..++.++|++|+
T Consensus 14 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~t~~~~~-~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~ 89 (187)
T 1zj6_A 14 HQEHKVIIVGLDNAGKTTILYQFSMNEVV-HTSPTIGSNV-EEIVINN--TRFLMWDIGGQESLRSSWNTYYTNTEFVIV 89 (187)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHHTTSCE-EEECCSCSSC-EEEEETT--EEEEEEECCC----CGGGHHHHTTCCEEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCC-cCcCCCccce-EEEEECC--EEEEEEECCCCHhHHHHHHHHhcCCCEEEE
Confidence 46799999999999999999999988876 5666666333 3445554 679999999999999999999999999999
Q ss_pred EEeCCChhhHHhhhhhhHHHHHhhh--CCCCCEEEEeeCcccccC
Q 044772 100 AFSLISRPSYENISKKKWVPELRHY--APSVPIVLVGTKLDLRKD 142 (159)
Q Consensus 100 v~d~~~~~s~~~~~~~~~~~~i~~~--~~~~piilv~nK~Dl~~~ 142 (159)
|||++++++|..+. .|+..+... ..+.|+++|+||+|+.+.
T Consensus 90 v~d~~~~~s~~~~~--~~~~~~~~~~~~~~~piilv~NK~Dl~~~ 132 (187)
T 1zj6_A 90 VVDSTDRERISVTR--EELYKMLAHEDLRKAGLLIFANKQDVKEC 132 (187)
T ss_dssp EEETTCTTTHHHHH--HHHHHHHTSGGGTTCEEEEEEECTTSTTC
T ss_pred EEeCCCHHHHHHHH--HHHHHHHhchhhCCCeEEEEEECCCCcCC
Confidence 99999999999988 888877765 358999999999999753
No 95
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=99.92 E-value=2e-24 Score=149.03 Aligned_cols=117 Identities=16% Similarity=0.214 Sum_probs=96.9
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEE
Q 044772 20 TKFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL 99 (159)
Q Consensus 20 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~ 99 (159)
.+.+||+++|++|+|||||+++|.++.+. .+.+|.+... ..+.++ .+.+.+||++|++.+...+..+++++|++++
T Consensus 5 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~t~~~~~-~~~~~~--~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~ 80 (171)
T 1upt_A 5 TREMRILILGLDGAGKTTILYRLQVGEVV-TTIPTIGFNV-ETVTYK--NLKFQVWDLGGLTSIRPYWRCYYSNTDAVIY 80 (171)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHSSCC-CCCCCSSEEE-EEEEET--TEEEEEEEECCCGGGGGGGGGGCTTCSEEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCC-CcCCcCccce-EEEEEC--CEEEEEEECCCChhhhHHHHHHhccCCEEEE
Confidence 35689999999999999999999988875 3466655332 344455 3679999999999999999999999999999
Q ss_pred EEeCCChhhHHhhhhhhHHHHHhhhC--CCCCEEEEeeCcccccC
Q 044772 100 AFSLISRPSYENISKKKWVPELRHYA--PSVPIVLVGTKLDLRKD 142 (159)
Q Consensus 100 v~d~~~~~s~~~~~~~~~~~~i~~~~--~~~piilv~nK~Dl~~~ 142 (159)
|||++++.+|..+. .|+..+.... .+.|+++|+||+|+.+.
T Consensus 81 v~d~~~~~s~~~~~--~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 123 (171)
T 1upt_A 81 VVDSCDRDRIGISK--SELVAMLEEEELRKAILVVFANKQDMEQA 123 (171)
T ss_dssp EEETTCCTTHHHHH--HHHHHHHTCGGGTTCEEEEEEECTTSTTC
T ss_pred EEECCCHHHHHHHH--HHHHHHHhchhhCCCEEEEEEECCCCcCC
Confidence 99999999999887 7776665442 58999999999999765
No 96
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=99.92 E-value=1e-24 Score=154.34 Aligned_cols=134 Identities=36% Similarity=0.599 Sum_probs=114.5
Q ss_pred cceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeee-EEEEEECCeEEEEEEEeCCCcccccccccccccCCcEE
Q 044772 19 ATKFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNF-SANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADVF 97 (159)
Q Consensus 19 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ 97 (159)
....++|+++|++|||||||+++|.+..+...+.++.+..+ ...+.+++..+.+.+||++|.+.+...+..++..++++
T Consensus 26 ~~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~ 105 (191)
T 1oix_A 26 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGA 105 (191)
T ss_dssp CSEEEEEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCCCHHHHTTCCEE
T ss_pred cCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEECCCCcchhhhhHHHhhcCCEE
Confidence 45679999999999999999999999998878888877665 55778889888899999999999988888899999999
Q ss_pred EEEEeCCChhhHHhhhhhhHHHHHhhhC-CCCCEEEEeeCcccccCccccccCCCccc
Q 044772 98 ILAFSLISRPSYENISKKKWVPELRHYA-PSVPIVLVGTKLDLRKDRQFHLDYPGAYT 154 (159)
Q Consensus 98 i~v~d~~~~~s~~~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~r~v~~~~~~~~~ 154 (159)
++|||+.+..+|..+. .|+..+.... .+.|+++++||+|+.+.+.+..+++++++
T Consensus 106 i~v~d~~~~~s~~~~~--~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~ 161 (191)
T 1oix_A 106 LLVYDIAKHLTYENVE--RWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFA 161 (191)
T ss_dssp EEEEETTCHHHHHTHH--HHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHH
T ss_pred EEEEECcCHHHHHHHH--HHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHH
Confidence 9999999999998887 7888776654 47899999999999887777666555543
No 97
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=99.92 E-value=4.6e-25 Score=156.12 Aligned_cols=119 Identities=17% Similarity=0.243 Sum_probs=92.8
Q ss_pred CcceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEE
Q 044772 18 TATKFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADVF 97 (159)
Q Consensus 18 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ 97 (159)
...+.+||+++|++|||||||+++|.++.+. .+.||.+.. ...+..++ +.+.+||++|++.+...+..++.+++++
T Consensus 25 ~~~~~~ki~v~G~~~vGKSsLi~~l~~~~~~-~~~~t~~~~-~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~i 100 (192)
T 2b6h_A 25 FGKKQMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFN-VETVEYKN--ICFTVWDVGGQDKIRPLWRHYFQNTQGL 100 (192)
T ss_dssp TTTSCEEEEEEESTTSSHHHHHHHHCSSCCE-EEEEETTEE-EEEEEETT--EEEEEEECC-----CTTHHHHHHTCCEE
T ss_pred ccCCccEEEEECCCCCCHHHHHHHHHhCCcc-ccCCcCcee-EEEEEECC--EEEEEEECCCCHhHHHHHHHHhccCCEE
Confidence 3457799999999999999999999988875 345555522 22334433 6799999999999999999999999999
Q ss_pred EEEEeCCChhhHHhhhhhhHHHHHhhhC--CCCCEEEEeeCcccccC
Q 044772 98 ILAFSLISRPSYENISKKKWVPELRHYA--PSVPIVLVGTKLDLRKD 142 (159)
Q Consensus 98 i~v~d~~~~~s~~~~~~~~~~~~i~~~~--~~~piilv~nK~Dl~~~ 142 (159)
++|||++++++|..+. .|+..+.... .+.|++||+||+|+.+.
T Consensus 101 ilv~D~~~~~s~~~~~--~~l~~~~~~~~~~~~piilv~NK~Dl~~~ 145 (192)
T 2b6h_A 101 IFVVDSNDRERVQESA--DELQKMLQEDELRDAVLLVFANKQDMPNA 145 (192)
T ss_dssp EEEEETTCGGGHHHHH--HHHHHHHTCGGGTTCEEEEEEECTTSTTC
T ss_pred EEEEECCCHHHHHHHH--HHHHHHhcccccCCCeEEEEEECCCCCCC
Confidence 9999999999999888 7877776532 58999999999999765
No 98
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=99.92 E-value=5.4e-25 Score=154.33 Aligned_cols=119 Identities=22% Similarity=0.341 Sum_probs=96.9
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEE
Q 044772 20 TKFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL 99 (159)
Q Consensus 20 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~ 99 (159)
...+||+++|++|||||||+++|.++.+ ..+.+|.+.. ...+..++ +.+.+||++|++.+...+..++.+++++++
T Consensus 14 ~~~~ki~ivG~~~vGKSsL~~~l~~~~~-~~~~~t~g~~-~~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i~ 89 (181)
T 1fzq_A 14 DQEVRILLLGLDNAGKTTLLKQLASEDI-SHITPTQGFN-IKSVQSQG--FKLNVWDIGGQRKIRPYWRSYFENTDILIY 89 (181)
T ss_dssp SSCEEEEEEESTTSSHHHHHHHHCCSCC-EEEEEETTEE-EEEEEETT--EEEEEEECSSCGGGHHHHHHHHTTCSEEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcCCC-CcccCcCCeE-EEEEEECC--EEEEEEECCCCHHHHHHHHHHhCCCCEEEE
Confidence 4579999999999999999999998765 3445555532 23445553 679999999999999888999999999999
Q ss_pred EEeCCChhhHHhhhhhhHHHHHhhh--CCCCCEEEEeeCcccccCcc
Q 044772 100 AFSLISRPSYENISKKKWVPELRHY--APSVPIVLVGTKLDLRKDRQ 144 (159)
Q Consensus 100 v~d~~~~~s~~~~~~~~~~~~i~~~--~~~~piilv~nK~Dl~~~r~ 144 (159)
|||++++++|..+. .|+..+... ..+.|+++|+||+|+.+.+.
T Consensus 90 v~d~~~~~s~~~~~--~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~ 134 (181)
T 1fzq_A 90 VIDSADRKRFEETG--QELTELLEEEKLSCVPVLIFANKQDLLTAAP 134 (181)
T ss_dssp EEETTCGGGHHHHH--HHHHHHTTCGGGTTCCEEEEEECTTSTTCCC
T ss_pred EEECcCHHHHHHHH--HHHHHHHhChhhcCCCEEEEEECcCcccCCC
Confidence 99999999999887 777766543 25799999999999976543
No 99
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=99.92 E-value=1.1e-25 Score=170.76 Aligned_cols=128 Identities=13% Similarity=0.105 Sum_probs=97.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCC---CcccceeeeeEEEEEECCeEEEEEEEeCCCcccccc---cccccccCCcEE
Q 044772 24 KCVTVRDGAVGKTCLLISYTGNTFPT---DYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNR---LRPLSYRGADVF 97 (159)
Q Consensus 24 ki~vvG~~~~GKSsli~~l~~~~~~~---~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~---~~~~~~~~~~~~ 97 (159)
||+++|++|||||||++++.++.+.. .+.+|.+..+.. ++ ..+++++|||+|+++|.. .+..|+++++++
T Consensus 1 KIvllGdsgvGKTSLl~~~~~~~~~~~~~~~~~Tig~~~~~---v~-~~v~LqIWDTAGQErf~~~~l~~~~yyr~a~~~ 76 (331)
T 3r7w_B 1 MVLLMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPSLEH---FS-TLIDLAVMELPGQLNYFEPSYDSERLFKSVGAL 76 (331)
T ss_dssp CEEEECSTTSSTTHHHHHHHSCCCSGGGTTCCCCCSCCCEE---EC-SSSCEEEEECCSCSSSCCCSHHHHHHHTTCSEE
T ss_pred CEEEECCCCCCHHHHHHHHHcCCCCCccceecCeeeeeeEE---Ec-cEEEEEEEECCCchhccchhhhhhhhccCCCEE
Confidence 68999999999999999887654332 256677665542 23 347899999999999964 358899999999
Q ss_pred EEEEeCCChhhHHhhhh-hhHHHHHhhhCCCCCEEEEeeCcccccC-------ccccccCCCccccc
Q 044772 98 ILAFSLISRPSYENISK-KKWVPELRHYAPSVPIVLVGTKLDLRKD-------RQFHLDYPGAYTIS 156 (159)
Q Consensus 98 i~v~d~~~~~s~~~~~~-~~~~~~i~~~~~~~piilv~nK~Dl~~~-------r~v~~~~~~~~~~~ 156 (159)
|+|||++++ .++.... ..|+..+....+++|++|+|||+|+... |+|+.++++++|..
T Consensus 77 IlV~Ditd~-~~~~~~~l~~~l~~~~~~~~~ipillvgNK~DL~~~~~R~~~~R~V~~~~~~~la~~ 142 (331)
T 3r7w_B 77 VYVIDSQDE-YINAITNLAMIIEYAYKVNPSINIEVLIHKVDGLSEDFKVDAQRDIMQRTGEELLEL 142 (331)
T ss_dssp EEECCCSSC-TTHHHHHHHHHHHHHHHHCTTCEEEEECCCCCSSCSHHHHHHHHHHHHHHHHTTSSS
T ss_pred EEEEECCch-HHHHHHHHHHHHHHHhhcCCCCcEEEEEECcccCchhhhhhHHHHhhHHHHHHHHhh
Confidence 999999987 3333320 1446666666789999999999999764 67888887777753
No 100
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=99.92 E-value=1.3e-24 Score=155.68 Aligned_cols=121 Identities=14% Similarity=0.101 Sum_probs=92.5
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeeeEEEEEECCe-EEEEEEEeCCCcccccc-cccccccCCcEE
Q 044772 20 TKFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGR-TVNLGLWDTAGQEDYNR-LRPLSYRGADVF 97 (159)
Q Consensus 20 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~-~~~~~i~D~~g~~~~~~-~~~~~~~~~~~~ 97 (159)
.+.+||+++|++|||||||+++|+++.+...+.++....+. +.+++. .+.+.+||++|++.+.. ++..++++++++
T Consensus 5 ~~~~ki~vvG~~~~GKTsli~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~ 82 (214)
T 2fh5_B 5 SSQRAVLFVGLCDSGKTLLFVRLLTGQYRDTQTSITDSSAI--YKVNNNRGNSLTLIDLPGHESLRFQLLDRFKSSARAV 82 (214)
T ss_dssp ---CEEEEECSTTSSHHHHHHHHHHSCCCCBCCCCSCEEEE--EECSSTTCCEEEEEECCCCHHHHHHHHHHHGGGEEEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCcccccCCcceeeEE--EEecCCCccEEEEEECCCChhHHHHHHHHHHhhCCEE
Confidence 46789999999999999999999999988777655433222 455543 57899999999999887 788889999999
Q ss_pred EEEEeCCChh-hHHhhhhhhHHHHHhhh---CCCCCEEEEeeCcccccCc
Q 044772 98 ILAFSLISRP-SYENISKKKWVPELRHY---APSVPIVLVGTKLDLRKDR 143 (159)
Q Consensus 98 i~v~d~~~~~-s~~~~~~~~~~~~i~~~---~~~~piilv~nK~Dl~~~r 143 (159)
|+|||+++.. ++..... .|...+... ..++|++||+||+|+...+
T Consensus 83 i~v~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~ 131 (214)
T 2fh5_B 83 VFVVDSAAFQREVKDVAE-FLYQVLIDSMALKNSPSLLIACNKQDIAMAK 131 (214)
T ss_dssp EEEEETTTHHHHHHHHHH-HHHHHHHHHHTSTTCCEEEEEEECTTSTTCC
T ss_pred EEEEECCCcCHHHHHHHH-HHHHHHhhhhhcccCCCEEEEEECCCCCCcc
Confidence 9999999854 4555542 455444432 3479999999999998663
No 101
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=99.92 E-value=1.1e-24 Score=153.33 Aligned_cols=117 Identities=19% Similarity=0.219 Sum_probs=96.8
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEE
Q 044772 20 TKFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL 99 (159)
Q Consensus 20 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~ 99 (159)
.+.+||+++|++|||||||+++|..+.+.. +.+|.+.. ...+..++ +.+.+||++|++.+...+..+++++|++++
T Consensus 20 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~-~~~t~~~~-~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~ 95 (189)
T 2x77_A 20 DRKIRVLMLGLDNAGKTSILYRLHLGDVVT-TVPTVGVN-LETLQYKN--ISFEVWDLGGQTGVRPYWRCYFSDTDAVIY 95 (189)
T ss_dssp TSCEEEEEEEETTSSHHHHHHHTCCSCCEE-ECSSTTCC-EEEEEETT--EEEEEEEECCSSSSCCCCSSSSTTCCEEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHcCCCCC-cCCCCceE-EEEEEECC--EEEEEEECCCCHhHHHHHHHHhhcCCEEEE
Confidence 467999999999999999999999887753 45665532 23344443 679999999999999999999999999999
Q ss_pred EEeCCChhhHHhhhhhhHHHHHhhhC--CCCCEEEEeeCcccccC
Q 044772 100 AFSLISRPSYENISKKKWVPELRHYA--PSVPIVLVGTKLDLRKD 142 (159)
Q Consensus 100 v~d~~~~~s~~~~~~~~~~~~i~~~~--~~~piilv~nK~Dl~~~ 142 (159)
|||++++++|..+. .|+..+.... .+.|+++|+||+|+...
T Consensus 96 v~d~~~~~s~~~~~--~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 138 (189)
T 2x77_A 96 VVDSTDRDRMGVAK--HELYALLDEDELRKSLLLIFANKQDLPDA 138 (189)
T ss_dssp EEETTCCTTHHHHH--HHHHHHHTCSTTTTCEEEEEEECTTSTTC
T ss_pred EEeCCCHHHHHHHH--HHHHHHHhhhhcCCCeEEEEEECCCCcCC
Confidence 99999999999887 7777665542 58999999999999765
No 102
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.91 E-value=1.4e-24 Score=151.68 Aligned_cols=117 Identities=16% Similarity=0.203 Sum_probs=94.6
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEE
Q 044772 20 TKFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL 99 (159)
Q Consensus 20 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~ 99 (159)
.+.+||+++|++|||||||+++|.++.+ ..+.++.+.. ...+.+++ +.+.+||++|++.+...+..++.+++++++
T Consensus 16 ~~~~~i~v~G~~~~GKssli~~l~~~~~-~~~~~t~~~~-~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~ 91 (183)
T 1moz_A 16 NKELRILILGLDGAGKTTILYRLQIGEV-VTTKPTIGFN-VETLSYKN--LKLNVWDLGGQTSIRPYWRCYYADTAAVIF 91 (183)
T ss_dssp SSCEEEEEEEETTSSHHHHHHHTCCSEE-EEECSSTTCC-EEEEEETT--EEEEEEEEC----CCTTGGGTTTTEEEEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCc-CccCCcCccc-eEEEEECC--EEEEEEECCCCHhHHHHHHHHhccCCEEEE
Confidence 5679999999999999999999998777 4555665533 23444554 679999999999999999999999999999
Q ss_pred EEeCCChhhHHhhhhhhHHHHHhhh--CCCCCEEEEeeCcccccC
Q 044772 100 AFSLISRPSYENISKKKWVPELRHY--APSVPIVLVGTKLDLRKD 142 (159)
Q Consensus 100 v~d~~~~~s~~~~~~~~~~~~i~~~--~~~~piilv~nK~Dl~~~ 142 (159)
|||++++.+|..+. .|+..+... ..+.|+++|+||+|+.+.
T Consensus 92 v~d~~~~~s~~~~~--~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 134 (183)
T 1moz_A 92 VVDSTDKDRMSTAS--KELHLMLQEEELQDAALLVFANKQDQPGA 134 (183)
T ss_dssp EEETTCTTTHHHHH--HHHHHHTTSSTTSSCEEEEEEECTTSTTC
T ss_pred EEECCCHHHHHHHH--HHHHHHHcChhhCCCeEEEEEECCCCCCC
Confidence 99999999999888 788877765 368999999999999764
No 103
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=99.91 E-value=5e-25 Score=166.79 Aligned_cols=130 Identities=22% Similarity=0.310 Sum_probs=100.9
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCCC---CCcccceeeeeEEEEEECCeEEEEEEEeCCCcccc-----ccccccccc
Q 044772 21 KFIKCVTVRDGAVGKTCLLISYTGNTFP---TDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDY-----NRLRPLSYR 92 (159)
Q Consensus 21 ~~~ki~vvG~~~~GKSsli~~l~~~~~~---~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~-----~~~~~~~~~ 92 (159)
..+||+++|++|||||||+++|+++... ..+.+|.+..+. ...+++ .+.+.+||+||++.+ ...+..+++
T Consensus 2 ~~~KI~lvG~~~vGKSSLi~~l~~~~~~~~~~~~~~Ti~~~~~-~~~~~~-~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ 79 (307)
T 3r7w_A 2 LGSKLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHS-HLRFLG-NMTLNLWDCGGQDVFMENYFTKQKDHIFQ 79 (307)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHSCCCTGGGGGCCCCCSEEEE-EEEETT-TEEEEEEEECCSHHHHHHHHTTTHHHHHT
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCccccCcCCccceEEE-EEEeCC-ceEEEEEECCCcHHHhhhhhhhHHHHHhc
Confidence 4689999999999999999999987422 235566665554 334444 478999999999988 678888999
Q ss_pred CCcEEEEEEeCCChhhHHhhhh-hhHHHHHhhhCCCCCEEEEeeCccccc--Ccc----ccccCCCc
Q 044772 93 GADVFILAFSLISRPSYENISK-KKWVPELRHYAPSVPIVLVGTKLDLRK--DRQ----FHLDYPGA 152 (159)
Q Consensus 93 ~~~~~i~v~d~~~~~s~~~~~~-~~~~~~i~~~~~~~piilv~nK~Dl~~--~r~----v~~~~~~~ 152 (159)
+++++|+|||++++++|..+.. ..|+..+....+++|++||+||+|+.+ .|+ +..++++.
T Consensus 80 ~ad~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~~~~~piilv~NK~Dl~~~~~r~~~~~v~~~~~~~ 146 (307)
T 3r7w_A 80 MVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVLLHKMDLVQLDKREELFQIMMKNLSE 146 (307)
T ss_dssp TCSEEEEEEETTCSCHHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHH
T ss_pred cCCEEEEEEECCChhhHHHHHHHHHHHHHHHHhCCCCeEEEEEecccccchhhhhHHHHHHHHHHHH
Confidence 9999999999999999998861 144666666677899999999999987 665 55444433
No 104
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=99.90 E-value=4e-25 Score=163.23 Aligned_cols=129 Identities=20% Similarity=0.276 Sum_probs=95.9
Q ss_pred CCCCcceeeEEEEEcCC---------CCCHHHHHHHHhc---CCCCCCcccce-eeeeE-E--------------EEEEC
Q 044772 15 TTTTATKFIKCVTVRDG---------AVGKTCLLISYTG---NTFPTDYVPTV-FDNFS-A--------------NVMVD 66 (159)
Q Consensus 15 ~~~~~~~~~ki~vvG~~---------~~GKSsli~~l~~---~~~~~~~~~t~-~~~~~-~--------------~~~~~ 66 (159)
........+||+|+|.+ |||||||+++|++ +.+...+.++. +..+. . ...++
T Consensus 12 ~~~~~~~~~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~~~~~~~~~~~~~t~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 91 (255)
T 3c5h_A 12 ENLYFQGTYNISVVGLSGTEKEKGQCGIGKSCLCNRFVRPSADEFHLDHTSVLSTSDFGGRVVNNDHFLYWGEVSRSLED 91 (255)
T ss_dssp TTSSCCSCEEEEEEESCCCTTTTTTCCCSHHHHHHHHHCCSTTTCCSCCCCEECHHHHTSTTTTTCSEEEEEEEC-----
T ss_pred CCCCCCceeEEEEECCCccccccCCCCcCHHHHHHHHHhccCCccccccCCcccccccceeEeecccccccccccccccC
Confidence 33445677999999999 9999999999998 56766666665 22221 1 11245
Q ss_pred CeEEEEEEEe-----------------------CCCccccccccccccc---------------------CCcEEEEEEe
Q 044772 67 GRTVNLGLWD-----------------------TAGQEDYNRLRPLSYR---------------------GADVFILAFS 102 (159)
Q Consensus 67 ~~~~~~~i~D-----------------------~~g~~~~~~~~~~~~~---------------------~~~~~i~v~d 102 (159)
+..+.+++|| ++|++.+..++..++. +++++|+|||
T Consensus 92 ~~~~~l~i~D~~~~~D~~~~~~~~~~~~~~~~~~~g~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vilV~D 171 (255)
T 3c5h_A 92 CVECKMHIVEQTEFIDDQTFQPHRSTALQPYIKRAAATKLASAEKLMYFCTDQLGLEQDFEQKQMPDGKLLVDGFLLGID 171 (255)
T ss_dssp ----CEEEEEECCCEETTTCSBTTGGGCCCHHHHHTCSEEECTTCBCCCCGGGTTCGGGSCCCBCGGGEEECCEEEEEEE
T ss_pred CcEEEEEEEEccccccccccccccccccccccccchhhhhhhhhhhhhhccccccccccccccccccccccCCEEEEEEE
Confidence 6778899999 6677778888888887 7999999999
Q ss_pred CCCh--hhHHhhhhhhHHHHHhhh--CCCCCEEEEeeCcccccCccc
Q 044772 103 LISR--PSYENISKKKWVPELRHY--APSVPIVLVGTKLDLRKDRQF 145 (159)
Q Consensus 103 ~~~~--~s~~~~~~~~~~~~i~~~--~~~~piilv~nK~Dl~~~r~v 145 (159)
++++ ++|..+. .|+..+... ..++|++||+||+|+.+.+.+
T Consensus 172 ~t~~~~~s~~~~~--~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v 216 (255)
T 3c5h_A 172 VSRGMNRNFDDQL--KFVSNLYNQLAKTKKPIVVVLTKCDEGVERYI 216 (255)
T ss_dssp CBC----CHHHHH--HHHHHHHHHHHHTTCCEEEEEECGGGBCHHHH
T ss_pred CCCCchhhHHHHH--HHHHHHHHHhccCCCCEEEEEEcccccccHHH
Confidence 9998 8999988 899888765 258999999999999877666
No 105
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=99.90 E-value=5.5e-24 Score=162.48 Aligned_cols=120 Identities=18% Similarity=0.245 Sum_probs=89.8
Q ss_pred CcceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEE
Q 044772 18 TATKFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADVF 97 (159)
Q Consensus 18 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ 97 (159)
...+.+||+|+|++|||||||+++|.++.+... .+|.+..+. .+... .+.+.+||++|++.+..++..+++.++++
T Consensus 161 ~~~~~~kI~ivG~~~vGKSsLl~~l~~~~~~~~-~pT~~~~~~-~~~~~--~~~l~i~Dt~G~~~~~~~~~~~~~~ad~v 236 (329)
T 3o47_A 161 FGKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVE-TVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGL 236 (329)
T ss_dssp --CCSEEEEEEESTTSSHHHHHHHTCSSCCEEE-EEETTEEEE-EEEET--TEEEEEEECC-----CCSHHHHHTTEEEE
T ss_pred cccCcceEEEECCCCccHHHHHHHHhCCCCCCc-ccccceEEE-EEecC--cEEEEEEECCCCHhHHHHHHHHhccCCEE
Confidence 344678999999999999999999998887543 344443332 23333 36799999999999999999999999999
Q ss_pred EEEEeCCChhhHHhhhhhhHHHHHhhhC--CCCCEEEEeeCcccccCc
Q 044772 98 ILAFSLISRPSYENISKKKWVPELRHYA--PSVPIVLVGTKLDLRKDR 143 (159)
Q Consensus 98 i~v~d~~~~~s~~~~~~~~~~~~i~~~~--~~~piilv~nK~Dl~~~r 143 (159)
|+|||++++.+|..+. .|+..+.... +++|++||+||+|+.+.+
T Consensus 237 ilV~D~~~~~s~~~~~--~~~~~~~~~~~~~~~piilV~NK~Dl~~~~ 282 (329)
T 3o47_A 237 IFVVDSNDRERVNEAR--EELMRMLAEDELRDAVLLVFANKQDLPNAM 282 (329)
T ss_dssp EEEEETTCSSSHHHHH--HHHHHHHTCGGGTTCEEEEEEECTTSTTCC
T ss_pred EEEEECCchHHHHHHH--HHHHHHHhhhccCCCeEEEEEECccCCccc
Confidence 9999999999999988 5555544332 589999999999997653
No 106
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.90 E-value=4e-23 Score=165.26 Aligned_cols=118 Identities=22% Similarity=0.303 Sum_probs=97.5
Q ss_pred cceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEE
Q 044772 19 ATKFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADVFI 98 (159)
Q Consensus 19 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i 98 (159)
..+.+||+++|.+|||||||+++|.++.+.. +.+|.+..+. .+.. ..+.+.+|||+|++.+...+..+++++|++|
T Consensus 319 ~~~~~ki~lvG~~nvGKSsLl~~l~~~~~~~-~~~T~~~~~~-~~~~--~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~~i 394 (497)
T 3lvq_E 319 SNKEMRILMLGLDAAGKTTILYKLKLGQSVT-TIPTVGFNVE-TVTY--KNVKFNVWDVGGQDKIRPLWRHYYTGTQGLI 394 (497)
T ss_dssp -CCEEEEEEECSTTSSHHHHHHHHHHSSCCC-CCCCSSEEEE-EEES--SSCEEEEEEECCCGGGSGGGGGGGTTCCEEE
T ss_pred cccceeEEEEcCCCCCHHHHHHHHhcCCCCC-cCCccceeEE-EEEe--CCEEEEEEECCCcHHHHHHHHHHhccCCEEE
Confidence 3467999999999999999999999988654 4566665443 2333 3367999999999999999999999999999
Q ss_pred EEEeCCChhhHHhhhhhhHHHHHhhhC--CCCCEEEEeeCcccccC
Q 044772 99 LAFSLISRPSYENISKKKWVPELRHYA--PSVPIVLVGTKLDLRKD 142 (159)
Q Consensus 99 ~v~d~~~~~s~~~~~~~~~~~~i~~~~--~~~piilv~nK~Dl~~~ 142 (159)
+|||++++++|..+. .|+..+.... .++|++||+||+|+.+.
T Consensus 395 ~V~D~~~~~s~~~~~--~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~ 438 (497)
T 3lvq_E 395 FVVDCADRDRIDEAR--QELHRIINDREMRDAIILIFANKQDLPDA 438 (497)
T ss_dssp EEEETTCGGGHHHHH--HHHHHHHTSGGGTTCEEEEEEECCSSSSC
T ss_pred EEEECcchhHHHHHH--HHHHHHhhhhhcCCCcEEEEEECCCCCcC
Confidence 999999999999998 7777765432 58999999999999754
No 107
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=99.88 E-value=3.3e-22 Score=138.83 Aligned_cols=117 Identities=17% Similarity=0.240 Sum_probs=89.0
Q ss_pred cceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeee-EEEEEECCeEEEEEEEeCCCcccccccccccccCCcEE
Q 044772 19 ATKFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNF-SANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADVF 97 (159)
Q Consensus 19 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ 97 (159)
..+.++|+++|++|||||||+++|.++.+...+.++....+ ...+..++. .+.+||++|++.+...+..++..+|++
T Consensus 5 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 82 (178)
T 2lkc_A 5 VERPPVVTIMGHVDHGKTTLLDAIRHSKVTEQEAGGITQHIGAYQVTVNDK--KITFLDTPGHEAFTTMRARGAQVTDIV 82 (178)
T ss_dssp CCCCCEEEEESCTTTTHHHHHHHHHTTCSSCSSCCSSSTTCCCCEEEETTE--EEEESCCCSSSSSSCSCCSSCCCCCEE
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCccccCCCCceeEeeeEEEEEeCCc--eEEEEECCCCHHHHHHHHHHHhhCCEE
Confidence 35678999999999999999999999888776655544333 334556664 478999999999999999999999999
Q ss_pred EEEEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCcccccC
Q 044772 98 ILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKD 142 (159)
Q Consensus 98 i~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~ 142 (159)
++|||++++...... .++..+.. .++|+++|+||+|+.+.
T Consensus 83 i~v~d~~~~~~~~~~---~~l~~~~~--~~~p~ilv~nK~Dl~~~ 122 (178)
T 2lkc_A 83 ILVVAADDGVMPQTV---EAINHAKA--ANVPIIVAINKMDKPEA 122 (178)
T ss_dssp EEEEETTCCCCHHHH---HHHHHHGG--GSCCEEEEEETTTSSCS
T ss_pred EEEEECCCCCcHHHH---HHHHHHHh--CCCCEEEEEECccCCcC
Confidence 999999884322222 22222222 47899999999999753
No 108
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.88 E-value=3.1e-23 Score=148.92 Aligned_cols=118 Identities=13% Similarity=0.126 Sum_probs=94.3
Q ss_pred cceeeEEEEEcCCCCCHHHHHHHHhcCCCCC---CcccceeeeeEEEEEECCeEEEEEEEeCCCcccccccccccccC--
Q 044772 19 ATKFIKCVTVRDGAVGKTCLLISYTGNTFPT---DYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRG-- 93 (159)
Q Consensus 19 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~---~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~-- 93 (159)
....++|+++|++|+|||||+++|.+..+.. .+.++....+ ..+.+.+||+||++.+...+..++..
T Consensus 9 ~~~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~~~~~~~~~~~~--------~~~~~~l~Dt~G~~~~~~~~~~~~~~~~ 80 (218)
T 1nrj_B 9 KSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADY--------DGSGVTLVDFPGHVKLRYKLSDYLKTRA 80 (218)
T ss_dssp -CCCCEEEEECSTTSSHHHHHHHHHHSSCCCBCCCSSCEEETTG--------GGSSCEEEECCCCGGGTHHHHHHHHHHG
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHhcCCCCCeeeecCceEEEEe--------eCceEEEEECCCcHHHHHHHHHHHHhcc
Confidence 3567899999999999999999999888654 2444443322 33568999999999998888888877
Q ss_pred --CcEEEEEEeCC-ChhhHHhhhhhhHHHHHhhh-----CCCCCEEEEeeCcccccCcccc
Q 044772 94 --ADVFILAFSLI-SRPSYENISKKKWVPELRHY-----APSVPIVLVGTKLDLRKDRQFH 146 (159)
Q Consensus 94 --~~~~i~v~d~~-~~~s~~~~~~~~~~~~i~~~-----~~~~piilv~nK~Dl~~~r~v~ 146 (159)
++++|+|||++ ++++|..+. .|+..+... ..++|+++|+||+|+...+.+.
T Consensus 81 ~~~~~~i~v~D~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~ 139 (218)
T 1nrj_B 81 KFVKGLIFMVDSTVDPKKLTTTA--EFLVDILSITESSCENGIDILIACNKSELFTARPPS 139 (218)
T ss_dssp GGEEEEEEEEETTSCTTCCHHHH--HHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCHH
T ss_pred ccCCEEEEEEECCCChHHHHHHH--HHHHHHHhcccccccCCCCEEEEEEchHhcccCCHH
Confidence 89999999999 888998887 777666543 3589999999999998776654
No 109
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=99.88 E-value=4.2e-23 Score=145.45 Aligned_cols=117 Identities=14% Similarity=0.109 Sum_probs=89.2
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCC---cccceeeeeEEEEEECCeEEEEEEEeCCCcccccccccccccC---
Q 044772 20 TKFIKCVTVRDGAVGKTCLLISYTGNTFPTD---YVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRG--- 93 (159)
Q Consensus 20 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~---~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~--- 93 (159)
...++|+++|++|||||||+++|.+..+... +.++.. .+...+.+.+||+||++.+...+..++..
T Consensus 46 ~~~~~i~vvG~~g~GKSsll~~l~~~~~~~~~~~~~~~~~--------~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~ 117 (193)
T 2ged_A 46 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSA--------ADYDGSGVTLVDFPGHVKLRYKLSDYLKTRAK 117 (193)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHSSCC--------------------CCCCTTCSEEEETTCCBSSCCHHHHHHHHGG
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCcccccCCCcee--------eeecCCeEEEEECCCCchHHHHHHHHHHhhcc
Confidence 4678999999999999999999998876431 222221 11133568999999999988887777765
Q ss_pred -CcEEEEEEeCC-ChhhHHhhhhhhHHHHHhhh-----CCCCCEEEEeeCcccccCcccc
Q 044772 94 -ADVFILAFSLI-SRPSYENISKKKWVPELRHY-----APSVPIVLVGTKLDLRKDRQFH 146 (159)
Q Consensus 94 -~~~~i~v~d~~-~~~s~~~~~~~~~~~~i~~~-----~~~~piilv~nK~Dl~~~r~v~ 146 (159)
++++|+|||++ ++++|..+. .|+..+... ..+.|+++|+||+|+.+.+.+.
T Consensus 118 ~~~~~i~v~d~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~ 175 (193)
T 2ged_A 118 FVKGLIFMVDSTVDPKKLTTTA--EFLVDILSITESSCENGIDILIACNKSELFTARPPS 175 (193)
T ss_dssp GEEEEEEEEETTCCHHHHHHHH--HHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCHH
T ss_pred cCCEEEEEEECCCCchhHHHHH--HHHHHHHhhhhhccccCCCEEEEEEchHhcCCCCHH
Confidence 89999999999 899998887 776666543 2489999999999998766553
No 110
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=99.87 E-value=8.7e-22 Score=135.92 Aligned_cols=116 Identities=15% Similarity=0.122 Sum_probs=83.5
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeee-eEEEEEECCeEEEEEEEeCCCcccccc------ccccccc--
Q 044772 22 FIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDN-FSANVMVDGRTVNLGLWDTAGQEDYNR------LRPLSYR-- 92 (159)
Q Consensus 22 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~~~i~D~~g~~~~~~------~~~~~~~-- 92 (159)
.++|+++|++|||||||+++|.+..+...+.++.... ....+..++ ..+.+||++|++.+.. +...++.
T Consensus 3 ~~~v~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~~ 80 (165)
T 2wji_A 3 SYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNG--EKFKVVDLPGVYSLTANSIDEIIARDYIINE 80 (165)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCCSSSCC-----CCCCCEEEEEETT--EEEEEEECCCCSCSSSSSHHHHHHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHhCCCeeccCCCCcceeeeEEEEEECC--cEEEEEECCCcccCCCcchhHHHHHHHHhcC
Confidence 5899999999999999999999877654434433222 233445555 4699999999987753 2345554
Q ss_pred CCcEEEEEEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCcccccCcccc
Q 044772 93 GADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKDRQFH 146 (159)
Q Consensus 93 ~~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~r~v~ 146 (159)
+++++++|+|+++.+.. . .|+..+.. .+.|+++|+||+|+...+.+.
T Consensus 81 ~~~~~i~v~D~~~~~~~---~--~~~~~~~~--~~~p~ilv~nK~Dl~~~~~~~ 127 (165)
T 2wji_A 81 KPDLVVNIVDATALERN---L--YLTLQLME--MGANLLLALNKMDLAKSLGIE 127 (165)
T ss_dssp CCSEEEEEEETTCHHHH---H--HHHHHHHH--TTCCEEEEEECHHHHHHTTCC
T ss_pred CCCEEEEEecCCchhHh---H--HHHHHHHh--cCCCEEEEEEchHhccccChh
Confidence 89999999999875433 2 67766655 368999999999998766655
No 111
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=99.87 E-value=6.9e-22 Score=143.20 Aligned_cols=126 Identities=10% Similarity=0.018 Sum_probs=85.6
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCc-ccceeeeeEEEEEECCeEEEEEEEeCCCcccc---------cccccc
Q 044772 20 TKFIKCVTVRDGAVGKTCLLISYTGNTFPTDY-VPTVFDNFSANVMVDGRTVNLGLWDTAGQEDY---------NRLRPL 89 (159)
Q Consensus 20 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~---------~~~~~~ 89 (159)
...+||+|+|++|||||||+++|+++.+.... ..+...........++ ..+.+||+||+... ...+..
T Consensus 27 ~~~~kI~vvG~~~vGKSsLin~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~~ 104 (228)
T 2qu8_A 27 PHKKTIILSGAPNVGKSSFMNIVSRANVDVQSYSFTTKNLYVGHFDHKL--NKYQIIDTPGLLDRAFENRNTIEMTTITA 104 (228)
T ss_dssp TTSEEEEEECSTTSSHHHHHHHHTTTCEEEECC-----CEEEEEEEETT--EEEEEEECTTTTTSCGGGCCHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCcceeeeeeeeecCC--CeEEEEECCCCcCcccchhhhHHHHHHHH
Confidence 46799999999999999999999988764221 1111111122223333 56999999998321 111234
Q ss_pred cccCCcEEEEEEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCcccccCccccc
Q 044772 90 SYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKDRQFHL 147 (159)
Q Consensus 90 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~r~v~~ 147 (159)
++..++++|+|||++++.+|.......|+..+....++.|+++|+||+|+.+.+++..
T Consensus 105 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~~~~~ 162 (228)
T 2qu8_A 105 LAHINGVILFIIDISEQCGLTIKEQINLFYSIKSVFSNKSIVIGFNKIDKCNMDSLSI 162 (228)
T ss_dssp HHTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTCC-CCCEEEEEECGGGCC--CCCH
T ss_pred hhccccEEEEEEecccccCcchHHHHHHHHHHHHhhcCCcEEEEEeCcccCCchhhHH
Confidence 4678899999999999888763322267777776656899999999999987776654
No 112
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=99.87 E-value=1.6e-22 Score=163.16 Aligned_cols=127 Identities=22% Similarity=0.304 Sum_probs=96.0
Q ss_pred CcceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeeeEEEE---------EECCeEEEEEEEeCCCccccccccc
Q 044772 18 TATKFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANV---------MVDGRTVNLGLWDTAGQEDYNRLRP 88 (159)
Q Consensus 18 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~---------~~~~~~~~~~i~D~~g~~~~~~~~~ 88 (159)
.....+||+++|.+|||||||+++|.++.+...+.+|.+..+.... ..++..+.+.+||++|++.+.....
T Consensus 37 ~~~~~~kV~lvG~~~vGKSSLl~~l~~~~~~~~~~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G~e~~~~~~~ 116 (535)
T 3dpu_A 37 VHLQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIMHASHQ 116 (535)
T ss_dssp BCCCEEEEEEESSSCSSHHHHHHHHHC-----------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCSCCTTTTTCH
T ss_pred ccccceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEeccccccceeecCCCceEEEEEEECCcHHHHHHHHH
Confidence 4567899999999999999999999999988888888776654321 1123357899999999999999989
Q ss_pred ccccCCcEEEEEEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCcccccCccccccC
Q 044772 89 LSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKDRQFHLDY 149 (159)
Q Consensus 89 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~r~v~~~~ 149 (159)
.+++.++++|+|||+++. .... .|+..+..+.++.|++||+||+|+.+.+.+..++
T Consensus 117 ~~l~~~d~ii~V~D~s~~---~~~~--~~~~~l~~~~~~~pvilV~NK~Dl~~~~~v~~~~ 172 (535)
T 3dpu_A 117 FFMTRSSVYMLLLDSRTD---SNKH--YWLRHIEKYGGKSPVIVVMNKIDENPSYNIEQKK 172 (535)
T ss_dssp HHHHSSEEEEEEECGGGG---GGHH--HHHHHHHHHSSSCCEEEEECCTTTCTTCCCCHHH
T ss_pred HHccCCcEEEEEEeCCCc---hhHH--HHHHHHHHhCCCCCEEEEEECCCcccccccCHHH
Confidence 999999999999998754 4444 8999999888889999999999998877776543
No 113
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=99.87 E-value=1.2e-21 Score=136.28 Aligned_cols=116 Identities=23% Similarity=0.265 Sum_probs=86.3
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCCC--CCcccceeeeeEEEEEECCeEEEEEEEeCCCcccccccc--------ccc
Q 044772 21 KFIKCVTVRDGAVGKTCLLISYTGNTFP--TDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRLR--------PLS 90 (159)
Q Consensus 21 ~~~ki~vvG~~~~GKSsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~--------~~~ 90 (159)
...||+++|++|||||||+++|.+..+. ..+.++....+...+.+++. .+.+||++|++.+.... ..+
T Consensus 3 ~~~ki~ivG~~g~GKStLl~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~ 80 (172)
T 2gj8_A 3 HGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGM--PLHIIDTAGLREASDEVERIGIERAWQE 80 (172)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETTE--EEEEEECCCCSCCSSHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcceeeCCCCceeceeeEEEEECCe--EEEEEECCCcccchhHHHHHHHHHHHHH
Confidence 4579999999999999999999987642 33333433334556667764 47899999986543211 135
Q ss_pred ccCCcEEEEEEeCCChhhHHhhhhhhHHHHHhhhC-CCCCEEEEeeCccccc
Q 044772 91 YRGADVFILAFSLISRPSYENISKKKWVPELRHYA-PSVPIVLVGTKLDLRK 141 (159)
Q Consensus 91 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~ 141 (159)
+++++++++|||++++.++... .|+..+.... .++|+++|+||+|+.+
T Consensus 81 ~~~ad~~i~v~D~~~~~s~~~~---~~~~~~~~~~~~~~p~ilv~NK~Dl~~ 129 (172)
T 2gj8_A 81 IEQADRVLFMVDGTTTDAVDPA---EIWPEFIARLPAKLPITVVRNKADITG 129 (172)
T ss_dssp HHTCSEEEEEEETTTCCCCSHH---HHCHHHHHHSCTTCCEEEEEECHHHHC
T ss_pred HHhCCEEEEEEECCCCCCHHHH---HHHHHHHHhcccCCCEEEEEECccCCc
Confidence 7899999999999998887632 7777776654 4799999999999964
No 114
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=99.86 E-value=6.5e-22 Score=139.40 Aligned_cols=121 Identities=13% Similarity=0.205 Sum_probs=82.2
Q ss_pred CcceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeeeE-EEEEECCeEEEEEEEeCCC----------ccccccc
Q 044772 18 TATKFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFS-ANVMVDGRTVNLGLWDTAG----------QEDYNRL 86 (159)
Q Consensus 18 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~D~~g----------~~~~~~~ 86 (159)
+....++|+++|++|||||||+++|+++.+...+.++.+.+.. .....++ .+.+||+|| ++.+...
T Consensus 19 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~l~Dt~G~~~~~~~~~~~~~~~~~ 95 (195)
T 1svi_A 19 PEGGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIIND---ELHFVDVPGYGFAKVSKSEREAWGRM 95 (195)
T ss_dssp CCSCCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEETT---TEEEEECCCBCCCSSCHHHHHHHHHH
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHhCCCCccccCCCCCceeeEEEEEECC---cEEEEECCCCCccccCHHHHHHHHHH
Confidence 4457899999999999999999999998866555555544332 2233344 489999999 6666666
Q ss_pred ccccccCC---cEEEEEEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCcccccCcccc
Q 044772 87 RPLSYRGA---DVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKDRQFH 146 (159)
Q Consensus 87 ~~~~~~~~---~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~r~v~ 146 (159)
+..++..+ +++++|+|++++.++.......|+.. .+.|+++|+||+|+...+.+.
T Consensus 96 ~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~-----~~~p~i~v~nK~Dl~~~~~~~ 153 (195)
T 1svi_A 96 IETYITTREELKAVVQIVDLRHAPSNDDVQMYEFLKY-----YGIPVIVIATKADKIPKGKWD 153 (195)
T ss_dssp HHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHH-----TTCCEEEEEECGGGSCGGGHH
T ss_pred HHHHHhhhhcCCEEEEEEECCCCCCHHHHHHHHHHHH-----cCCCEEEEEECcccCChHHHH
Confidence 77777666 99999999998877765432134332 468999999999998766553
No 115
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=99.86 E-value=3.5e-21 Score=131.45 Aligned_cols=113 Identities=24% Similarity=0.184 Sum_probs=77.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCC--CCcccceeeeeEEEEEECCeEEEEEEEeCCCcccc-------cccccccccC
Q 044772 23 IKCVTVRDGAVGKTCLLISYTGNTFP--TDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDY-------NRLRPLSYRG 93 (159)
Q Consensus 23 ~ki~vvG~~~~GKSsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~-------~~~~~~~~~~ 93 (159)
.||+++|++|+|||||+++|.++.+. ..+.++........+..++. .+.+||++|++.+ ...+..++..
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~ 79 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVETDRG--RFLLVDTGGLWSGDKWEKKIQEKVDRALED 79 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCCC-----------CCEEEEEEETTE--EEEEEECGGGCSSSSCCHHHHHHHHHHTTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCeeeccCCCCceecceEEEEEeCCc--eEEEEECCCCCCccchHHHHHHHHHHHHHh
Confidence 68999999999999999999988743 22333333333445555664 5899999998763 3345567899
Q ss_pred CcEEEEEEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCcccccC
Q 044772 94 ADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKD 142 (159)
Q Consensus 94 ~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~ 142 (159)
++++++|||++++.+.... .+...+.. .+.|+++|+||+|+.+.
T Consensus 80 ~~~~i~v~d~~~~~~~~~~---~~~~~~~~--~~~p~ilv~nK~Dl~~~ 123 (161)
T 2dyk_A 80 AEVVLFAVDGRAELTQADY---EVAEYLRR--KGKPVILVATKVDDPKH 123 (161)
T ss_dssp CSEEEEEEESSSCCCHHHH---HHHHHHHH--HTCCEEEEEECCCSGGG
T ss_pred CCEEEEEEECCCcccHhHH---HHHHHHHh--cCCCEEEEEECcccccc
Confidence 9999999999986444322 22222222 36899999999999765
No 116
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=99.84 E-value=1.8e-21 Score=136.41 Aligned_cols=117 Identities=16% Similarity=0.140 Sum_probs=85.5
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceee-eeEEEEEECCeEEEEEEEeCCCccccc------cccccccc-
Q 044772 21 KFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFD-NFSANVMVDGRTVNLGLWDTAGQEDYN------RLRPLSYR- 92 (159)
Q Consensus 21 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~-~~~~~~~~~~~~~~~~i~D~~g~~~~~------~~~~~~~~- 92 (159)
+.++|+++|++|||||||+++|.+..+...+.++... .....+..++ ..+.+||++|++.+. .++..++.
T Consensus 6 ~~~~i~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~ 83 (188)
T 2wjg_A 6 KSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNG--EKFKVVDLPGVYSLTANSIDEIIARDYIIN 83 (188)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETT--EEEEEEECCCCSCCSSSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCccccCCCCeeccceEEEEEeCC--cEEEEEECCCcCccccccHHHHHHHHHHhc
Confidence 5689999999999999999999987654333333322 2233455555 569999999998775 23455554
Q ss_pred -CCcEEEEEEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCcccccCcccc
Q 044772 93 -GADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKDRQFH 146 (159)
Q Consensus 93 -~~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~r~v~ 146 (159)
.++++++|+|..+ +.... .|+..+.. .+.|+++|+||+|+...+.+.
T Consensus 84 ~~~~~~i~v~d~~~---~~~~~--~~~~~~~~--~~~piilv~nK~Dl~~~~~~~ 131 (188)
T 2wjg_A 84 EKPDLVVNIVDATA---LERNL--YLTLQLME--MGANLLLALNKMDLAKSLGIE 131 (188)
T ss_dssp HCCSEEEEEEEGGG---HHHHH--HHHHHHHT--TTCCEEEEEECHHHHHHTTCC
T ss_pred cCCCEEEEEecchh---HHHHH--HHHHHHHh--cCCCEEEEEEhhhccccccch
Confidence 5999999999875 44444 77777665 478999999999998766554
No 117
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=99.83 E-value=3.8e-20 Score=139.65 Aligned_cols=120 Identities=23% Similarity=0.222 Sum_probs=84.8
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCCCC-Cccc-ceeeeeEEEEEECCeEEEEEEEeCCCccc--------ccccccc
Q 044772 20 TKFIKCVTVRDGAVGKTCLLISYTGNTFPT-DYVP-TVFDNFSANVMVDGRTVNLGLWDTAGQED--------YNRLRPL 89 (159)
Q Consensus 20 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~-~~~~-t~~~~~~~~~~~~~~~~~~~i~D~~g~~~--------~~~~~~~ 89 (159)
.+..+|+++|.+|||||||+|+|++.++.. ...+ +...........+ ..++.+|||||... +......
T Consensus 5 ~~~g~V~ivG~~nvGKSTLln~l~g~~~~ivs~~~~tTr~~i~~i~~~~--~~~l~l~DTpG~~~~~~~l~~~~~~~~~~ 82 (301)
T 1wf3_A 5 TYSGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEG--RRQIVFVDTPGLHKPMDALGEFMDQEVYE 82 (301)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEET--TEEEEEEECCCCCCCCSHHHHHHHHHHHH
T ss_pred ccCCEEEEECCCCCCHHHHHHHHhCCceeeecCCCCceeEEEEEEEEeC--CcEEEEecCccccchhhHHHHHHHHHHHH
Confidence 456789999999999999999999988742 2222 2222222222333 35799999999865 3344556
Q ss_pred cccCCcEEEEEEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCcccccCcc
Q 044772 90 SYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKDRQ 144 (159)
Q Consensus 90 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~r~ 144 (159)
+++.+|++++|||++++.+.. .. .+++.+....++.|+++|+||+|+...+.
T Consensus 83 ~l~~ad~il~VvD~~~~~~~~--~~-~i~~~l~~~~~~~p~ilV~NK~Dl~~~~~ 134 (301)
T 1wf3_A 83 ALADVNAVVWVVDLRHPPTPE--DE-LVARALKPLVGKVPILLVGNKLDAAKYPE 134 (301)
T ss_dssp HTSSCSEEEEEEETTSCCCHH--HH-HHHHHHGGGTTTSCEEEEEECGGGCSSHH
T ss_pred HHhcCCEEEEEEECCCCCChH--HH-HHHHHHHhhcCCCCEEEEEECcccCCchH
Confidence 789999999999998764443 21 33455665545799999999999976544
No 118
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=99.83 E-value=1.1e-20 Score=143.05 Aligned_cols=123 Identities=16% Similarity=0.123 Sum_probs=89.8
Q ss_pred CCcceeeEEEEEcCCCCCHHHHHHHHhcCCCCC--CcccceeeeeEEEEEECCeEEEEEEEeCCCccccc----------
Q 044772 17 TTATKFIKCVTVRDGAVGKTCLLISYTGNTFPT--DYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYN---------- 84 (159)
Q Consensus 17 ~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~---------- 84 (159)
+++...-.|+++|.+|||||||+++|++.++.. ....+...........+ ...++.+|||||...+.
T Consensus 5 ~~~~~~g~v~ivG~~nvGKSTLin~l~g~~~~i~s~~~~tT~~~~~~~~~~~-~~~~i~lvDTPG~~~~~~~~~l~~~~~ 83 (308)
T 3iev_A 5 HHHMKVGYVAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIP-NEAQIIFLDTPGIYEPKKSDVLGHSMV 83 (308)
T ss_dssp --CCEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEET-TTEEEEEEECCCCCCCCTTCHHHHHHH
T ss_pred CCCCCCCEEEEECCCCCcHHHHHHHHhCCCccccCCCCCceeeEEEEEEecC-CCCeEEEEECcCCCccccchhHHHHHH
Confidence 344567789999999999999999999988752 22222222222233333 13569999999986544
Q ss_pred ccccccccCCcEEEEEEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCcccccCcc
Q 044772 85 RLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKDRQ 144 (159)
Q Consensus 85 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~r~ 144 (159)
.....++..+|++++|+|+++..++.... .|+..+.. .+.|+++|+||+|+.+.+.
T Consensus 84 ~~~~~~l~~aD~il~VvD~~~~~~~~~~~--~~~~~l~~--~~~pvilV~NK~Dl~~~~~ 139 (308)
T 3iev_A 84 EIAKQSLEEADVILFMIDATEGWRPRDEE--IYQNFIKP--LNKPVIVVINKIDKIGPAK 139 (308)
T ss_dssp HHHHHHHHHCSEEEEEEETTTBSCHHHHH--HHHHHTGG--GCCCEEEEEECGGGSSSGG
T ss_pred HHHHHHhhcCCEEEEEEeCCCCCCchhHH--HHHHHHHh--cCCCEEEEEECccCCCCHH
Confidence 34566788999999999999988888776 67777776 3689999999999974443
No 119
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=99.82 E-value=4.3e-20 Score=136.59 Aligned_cols=119 Identities=19% Similarity=0.181 Sum_probs=85.7
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccce-eeeeEEEEEECCeEEEEEEEeCCCcccccccc------cccc-
Q 044772 20 TKFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTV-FDNFSANVMVDGRTVNLGLWDTAGQEDYNRLR------PLSY- 91 (159)
Q Consensus 20 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~------~~~~- 91 (159)
.+.++|+++|++|||||||+++|.+..+.....+.. .......+..++ ..+.+||+||...+...+ ..++
T Consensus 3 ~~~~kI~lvG~~nvGKTsL~n~l~g~~~~~~~~pg~tv~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~e~v~~~~~~ 80 (258)
T 3a1s_A 3 LHMVKVALAGCPNVGKTSLFNALTGTKQYVANWPGVTVEKKEGVFTYKG--YTINLIDLPGTYSLGYSSIDEKIARDYLL 80 (258)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETT--EEEEEEECCCCSSCCSSSHHHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceEEEEEEEEEECC--eEEEEEECCCcCccCCCCHHHHHHHHHHh
Confidence 467899999999999999999999877643222222 221222333334 579999999998776532 4555
Q ss_pred -cCCcEEEEEEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCcccccCccccc
Q 044772 92 -RGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKDRQFHL 147 (159)
Q Consensus 92 -~~~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~r~v~~ 147 (159)
..+|++++|+|+++.++.. .|...+.. .++|+++|+||+|+.+.+.+..
T Consensus 81 ~~~~d~ii~V~D~t~~~~~~-----~~~~~l~~--~~~pvilv~NK~Dl~~~~~i~~ 130 (258)
T 3a1s_A 81 KGDADLVILVADSVNPEQSL-----YLLLEILE--MEKKVILAMTAIDEAKKTGMKI 130 (258)
T ss_dssp HSCCSEEEEEEETTSCHHHH-----HHHHHHHT--TTCCEEEEEECHHHHHHTTCCB
T ss_pred hcCCCEEEEEeCCCchhhHH-----HHHHHHHh--cCCCEEEEEECcCCCCccchHH
Confidence 5899999999999866543 45555544 3699999999999987776654
No 120
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=99.82 E-value=5.3e-20 Score=134.26 Aligned_cols=126 Identities=17% Similarity=0.087 Sum_probs=77.3
Q ss_pred CCCCcceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccc---eeeeeEEEEEECCeEEEEEEEeCCCcc----------
Q 044772 15 TTTTATKFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPT---VFDNFSANVMVDGRTVNLGLWDTAGQE---------- 81 (159)
Q Consensus 15 ~~~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t---~~~~~~~~~~~~~~~~~~~i~D~~g~~---------- 81 (159)
........+||+|+|++|||||||+++|++..+.....++ ...........++. .+.+|||||..
T Consensus 22 ~~~~~~~~~~i~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~i~liDTpG~~~~~~~~~~~~ 99 (239)
T 3lxx_A 22 RQEPRNSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSWKET--ELVVVDTPGIFDTEVPNAETS 99 (239)
T ss_dssp ------CEEEEEEECCTTSSHHHHHHHHHTSCCSCC-------CCSCEEEEEEETTE--EEEEEECCSCC-----CHHHH
T ss_pred cCCCCCCceEEEEECCCCCCHHHHHHHHcCCCcCccCCCCCceeeeEEEEEEEeCCc--eEEEEECCCccCCCCCHHHHH
Confidence 3445567899999999999999999999988875443331 12222334455554 58999999942
Q ss_pred -cccccccccccCCcEEEEEEeCCChhhHHhhhhhhHHHHHhhhC---CCCCEEEEeeCcccccCcccc
Q 044772 82 -DYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYA---PSVPIVLVGTKLDLRKDRQFH 146 (159)
Q Consensus 82 -~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~---~~~piilv~nK~Dl~~~r~v~ 146 (159)
.+...+..+++.++++|+|+|+++.... .. .|+..+.... ...|++||+||+|+.+.+.+.
T Consensus 100 ~~~~~~~~~~~~~~~~~l~v~d~~~~~~~-~~---~~l~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~ 164 (239)
T 3lxx_A 100 KEIIRCILLTSPGPHALLLVVPLGRYTEE-EH---KATEKILKMFGERARSFMILIFTRKDDLGDTNLH 164 (239)
T ss_dssp HHHHHHHHHTTTCCSEEEEEEETTCCSSH-HH---HHHHHHHHHHHHHHGGGEEEEEECGGGC------
T ss_pred HHHHHHHHhcCCCCcEEEEEeeCCCCCHH-HH---HHHHHHHHHhhhhccceEEEEEeCCccCCcccHH
Confidence 3444455667889999999998754331 11 3333333221 245999999999987655443
No 121
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=99.82 E-value=2.9e-21 Score=135.28 Aligned_cols=115 Identities=20% Similarity=0.252 Sum_probs=85.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCC-----------cccccccccccc
Q 044772 23 IKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAG-----------QEDYNRLRPLSY 91 (159)
Q Consensus 23 ~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g-----------~~~~~~~~~~~~ 91 (159)
+||+++|++|||||||+++|.++.+...+.++.... ......+ .+.+||+|| ++.+...+..++
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~t~~-~~~~~~~----~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~ 76 (190)
T 2cxx_A 2 ATIIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRK-IIEIEWK----NHKIIDMPGFGFMMGLPKEVQERIKDEIVHFI 76 (190)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHSCCCSSSSSTTCTTS-CEEEEET----TEEEEECCCBSCCTTSCHHHHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhCcCCccCCCCCccce-eEEEecC----CEEEEECCCccccccCCHHHHHHHHHHHHHHH
Confidence 689999999999999999999998876666644322 2222333 589999999 566777777777
Q ss_pred cC-CcEEEEEEeCCChhhHHhhhhhhHHHH--------Hhhh--CCCCCEEEEeeCcccccCc
Q 044772 92 RG-ADVFILAFSLISRPSYENISKKKWVPE--------LRHY--APSVPIVLVGTKLDLRKDR 143 (159)
Q Consensus 92 ~~-~~~~i~v~d~~~~~s~~~~~~~~~~~~--------i~~~--~~~~piilv~nK~Dl~~~r 143 (159)
+. +++++++|++.+..+|..+.. .|... +... ..+.|+++|+||+|+...+
T Consensus 77 ~~~~~~~~~v~~v~d~~s~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~ 138 (190)
T 2cxx_A 77 EDNAKNIDVAVLVVDGKAAPEIIK-RWEKRGEIPIDVEFYQFLRELDIPTIVAVNKLDKIKNV 138 (190)
T ss_dssp HHHGGGCCEEEEEEETTHHHHHHH-HHHHTTCCCHHHHHHHHHHHTTCCEEEEEECGGGCSCH
T ss_pred HhhhccCCEEEEEEcchhhhhHHH-hhhccCccHHHHHHHHHHHhcCCceEEEeehHhccCcH
Confidence 77 888888888888888877633 66542 2111 1479999999999998765
No 122
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=99.82 E-value=2.7e-20 Score=130.73 Aligned_cols=116 Identities=20% Similarity=0.198 Sum_probs=80.4
Q ss_pred CCcceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeeeEE-EEEECCeEEEEEEEeCCC----------cccccc
Q 044772 17 TTATKFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSA-NVMVDGRTVNLGLWDTAG----------QEDYNR 85 (159)
Q Consensus 17 ~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~-~~~~~~~~~~~~i~D~~g----------~~~~~~ 85 (159)
.+....+||+++|++|||||||+++|+++.+. .+.++.+..... ....+. .+.+||++| ++.+..
T Consensus 18 ~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~~~~~t~~~~~~~~~~---~~~i~Dt~G~~~~~~~~~~~~~~~~ 93 (195)
T 3pqc_A 18 YPPPLKGEVAFVGRSNVGKSSLLNALFNRKIA-FVSKTPGKTRSINFYLVNS---KYYFVDLPGYGYAKVSKKERMLWKR 93 (195)
T ss_dssp CCCCTTCEEEEEEBTTSSHHHHHHHHHTSCCS-CCCSSCCCCCCEEEEEETT---TEEEEECCCBSSSCCCHHHHHHHHH
T ss_pred CCCCCCeEEEEECCCCCCHHHHHHHHHcCccc-cccCCCCCccCeEEEEECC---cEEEEECCCCccccCChhhHHHHHH
Confidence 34456789999999999999999999988743 334444433322 222333 377999999 555666
Q ss_pred cccccccCC---cEEEEEEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCccccc
Q 044772 86 LRPLSYRGA---DVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRK 141 (159)
Q Consensus 86 ~~~~~~~~~---~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~ 141 (159)
.+..++..+ +++++|+|..+..+........|+... +.|+++|+||+|+..
T Consensus 94 ~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~-----~~p~i~v~nK~Dl~~ 147 (195)
T 3pqc_A 94 LVEDYFKNRWSLQMVFLLVDGRIPPQDSDLMMVEWMKSL-----NIPFTIVLTKMDKVK 147 (195)
T ss_dssp HHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHT-----TCCEEEEEECGGGSC
T ss_pred HHHHHHhcCcCceEEEEEecCCCCCCHHHHHHHHHHHHc-----CCCEEEEEEChhcCC
Confidence 666666554 899999998876444333211455443 689999999999964
No 123
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=99.82 E-value=6.9e-20 Score=135.59 Aligned_cols=122 Identities=15% Similarity=0.186 Sum_probs=87.0
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCC--CCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccccccccc-----
Q 044772 20 TKFIKCVTVRDGAVGKTCLLISYTGNTF--PTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYR----- 92 (159)
Q Consensus 20 ~~~~ki~vvG~~~~GKSsli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~----- 92 (159)
.+.++|+++|.+|+|||||+++|++..+ ...+.++........+..++. .+.+|||||++.+......+++
T Consensus 34 ~~~~~I~lvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~l~liDTpG~~~~~~~~~~~~~~i~~~ 111 (262)
T 3def_A 34 MNSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTMGGF--TINIIDTPGLVEAGYVNHQALELIKGF 111 (262)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHHTSCCSCCCSSCC-CCCCEEEEEEETTE--EEEEEECCCSEETTEECHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcceeeEEEEEEECCe--eEEEEECCCCCCcccchHHHHHHHHHH
Confidence 3679999999999999999999998875 333444333333444455554 6999999999887655444433
Q ss_pred ----CCcEEEEEEeCCChhhHHhhhhhhHHHHHhhhCC---CCCEEEEeeCcccccCccc
Q 044772 93 ----GADVFILAFSLISRPSYENISKKKWVPELRHYAP---SVPIVLVGTKLDLRKDRQF 145 (159)
Q Consensus 93 ----~~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~~---~~piilv~nK~Dl~~~r~v 145 (159)
.++++++|+++++.. +..... .|+..+..... ..|+++|+||+|+...+..
T Consensus 112 l~~~~~~~il~V~~~d~~~-~~~~~~-~~~~~l~~~~~~~~~~~~ivv~nK~Dl~~~~~~ 169 (262)
T 3def_A 112 LVNRTIDVLLYVDRLDVYA-VDELDK-QVVIAITQTFGKEIWCKTLLVLTHAQFSPPDEL 169 (262)
T ss_dssp TTTCEECEEEEEEESSCSC-CCHHHH-HHHHHHHHHHCGGGGGGEEEEEECTTCCCSTTC
T ss_pred HhcCCCCEEEEEEcCCCCC-CCHHHH-HHHHHHHHHhchhhhcCEEEEEeCcccCCCCCc
Confidence 789999999998755 554443 67777766542 2499999999999654443
No 124
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=99.81 E-value=3.9e-20 Score=136.67 Aligned_cols=116 Identities=14% Similarity=0.153 Sum_probs=83.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCccccee-eeeEEEEEECCeEEEEEEEeCCCcccccc----------cccccc
Q 044772 23 IKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVF-DNFSANVMVDGRTVNLGLWDTAGQEDYNR----------LRPLSY 91 (159)
Q Consensus 23 ~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~i~D~~g~~~~~~----------~~~~~~ 91 (159)
.+|+++|++|||||||+++|.+..+.....++.. ......+..++. .+.+||+||...+.. +...++
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g~~~~v~~~pg~Tv~~~~~~~~~~~~--~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~~ 79 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTNANQRVGNWPGVTVEKKTGEFLLGEH--LIEITDLPGVYSLVANAEGISQDEQIAAQSV 79 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTSEEEEECTTSSSEEEEEEEEETTE--EEEEEECCCCSSCC------CHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCccCCCCceEEEEEEEEEECCe--EEEEEeCCCcccccccccCCCHHHHHHHHHH
Confidence 4899999999999999999998865433233322 223445555664 689999999877664 345566
Q ss_pred --cCCcEEEEEEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCcccccCccccc
Q 044772 92 --RGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKDRQFHL 147 (159)
Q Consensus 92 --~~~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~r~v~~ 147 (159)
.++|++|+|+|+++.+++..+. .|+ .. .+.|+++|+||+|+.+.+.+..
T Consensus 80 ~~~~~d~vi~VvDas~~~~~~~l~--~~l---~~--~~~pvilv~NK~Dl~~~~~~~~ 130 (256)
T 3iby_A 80 IDLEYDCIINVIDACHLERHLYLT--SQL---FE--LGKPVVVALNMMDIAEHRGISI 130 (256)
T ss_dssp HHSCCSEEEEEEEGGGHHHHHHHH--HHH---TT--SCSCEEEEEECHHHHHHTTCEE
T ss_pred hhCCCCEEEEEeeCCCchhHHHHH--HHH---HH--cCCCEEEEEEChhcCCcCCcHH
Confidence 8999999999999876665443 333 22 2689999999999987665543
No 125
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=99.80 E-value=6.1e-20 Score=136.71 Aligned_cols=116 Identities=13% Similarity=0.138 Sum_probs=83.0
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCC-CCCcccceeeeeEEEEEECCeEEEEEEEeCCCcccccc------ccccccc-
Q 044772 21 KFIKCVTVRDGAVGKTCLLISYTGNTF-PTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNR------LRPLSYR- 92 (159)
Q Consensus 21 ~~~ki~vvG~~~~GKSsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~------~~~~~~~- 92 (159)
..++|+++|++|||||||+++|.+... ..++.++.-. .....++. ...+.+||+||+..+.. +...++.
T Consensus 2 ~~~kI~lvG~~nvGKSTL~n~L~g~~~~v~~~pg~tv~--~~~~~~~~-~~~l~l~DtpG~~~~~~~~~~e~v~~~~~~~ 78 (272)
T 3b1v_A 2 SMTEIALIGNPNSGKTSLFNLITGHNQRVGNWPGVTVE--RKSGLVKK-NKDLEIQDLPGIYSMSPYSPEAKVARDYLLS 78 (272)
T ss_dssp -CEEEEEECCTTSSHHHHHHHHHCCCCCCCSSSCCCCS--CEEEECTT-CTTEEEEECCCCSCSSCSSHHHHHHHHHHHT
T ss_pred CceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCCcEE--EEEEEEec-CCeEEEEECCCcCccCCCChHHHHHHHHHhc
Confidence 357999999999999999999998763 3333222211 22223444 45699999999987752 3455554
Q ss_pred -CCcEEEEEEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCcccccCcccc
Q 044772 93 -GADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKDRQFH 146 (159)
Q Consensus 93 -~~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~r~v~ 146 (159)
.+|++++|||+++.+++. .|...+.. .++|+++|+||+|+...+.+.
T Consensus 79 ~~~d~vi~V~D~t~~e~~~-----~~~~~l~~--~~~p~ilv~NK~Dl~~~~~~~ 126 (272)
T 3b1v_A 79 QRADSILNVVDATNLERNL-----YLTTQLIE--TGIPVTIALNMIDVLDGQGKK 126 (272)
T ss_dssp TCCSEEEEEEEGGGHHHHH-----HHHHHHHH--TCSCEEEEEECHHHHHHTTCC
T ss_pred CCCCEEEEEecCCchHhHH-----HHHHHHHh--cCCCEEEEEEChhhCCcCCcH
Confidence 699999999999866543 55555544 478999999999998766655
No 126
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=99.80 E-value=2.9e-19 Score=142.21 Aligned_cols=119 Identities=18% Similarity=0.211 Sum_probs=72.9
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCC--CCCcccceeeeeEEEEEECCeEEEEEEEeCCCcccccccc--------ccc
Q 044772 21 KFIKCVTVRDGAVGKTCLLISYTGNTF--PTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRLR--------PLS 90 (159)
Q Consensus 21 ~~~ki~vvG~~~~GKSsli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~--------~~~ 90 (159)
..++|+++|.+|+|||||+|+|.+... ...+.++..+.....+.+++ +.+.+|||+|...+...+ ..+
T Consensus 232 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~vs~~~gtT~d~~~~~i~~~g--~~l~liDT~G~~~~~~~ve~~gi~~~~~~ 309 (476)
T 3gee_A 232 EGVSTVIAGKPNAGKSTLLNTLLGQERAIVSHMPGTTRDYIEECFIHDK--TMFRLTDTAGLREAGEEIEHEGIRRSRMK 309 (476)
T ss_dssp HCEEEEEECCTTSSHHHHHHHCC------------------CEEEEETT--EEEEEEC--------------------CC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECC--eEEEEEECCCCCcchhHHHHHHHHHHHhh
Confidence 457899999999999999999998752 33444444444445566666 469999999987665433 447
Q ss_pred ccCCcEEEEEEeCCChhhHHhhhh-hhHHHHHhhhCCCCCEEEEeeCcccccCccc
Q 044772 91 YRGADVFILAFSLISRPSYENISK-KKWVPELRHYAPSVPIVLVGTKLDLRKDRQF 145 (159)
Q Consensus 91 ~~~~~~~i~v~d~~~~~s~~~~~~-~~~~~~i~~~~~~~piilv~nK~Dl~~~r~v 145 (159)
+..+|++++|||++++.++..+.. ..|+..+ .+.|+++|+||+|+...+.+
T Consensus 310 ~~~aD~vl~VvD~s~~~s~~~~~~~~~~l~~l----~~~piIvV~NK~Dl~~~~~~ 361 (476)
T 3gee_A 310 MAEADLILYLLDLGTERLDDELTEIRELKAAH----PAAKFLTVANKLDRAANADA 361 (476)
T ss_dssp CSSCSEEEEEEETTTCSSGGGHHHHHHHHHHC----TTSEEEEEEECTTSCTTTHH
T ss_pred cccCCEEEEEEECCCCcchhhhHHHHHHHHhc----CCCCEEEEEECcCCCCccch
Confidence 889999999999999888865431 1344333 37999999999999877655
No 127
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=99.80 E-value=3.2e-20 Score=133.42 Aligned_cols=122 Identities=13% Similarity=-0.006 Sum_probs=80.3
Q ss_pred CcceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeee-EEEEEEC-CeEEEEEEEeCCCc----------ccccc
Q 044772 18 TATKFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNF-SANVMVD-GRTVNLGLWDTAGQ----------EDYNR 85 (159)
Q Consensus 18 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~-~~~~~~~i~D~~g~----------~~~~~ 85 (159)
+....++|+|+|.+|+|||||+++|++.........+.+.+. ....... .....+.+|||||. +.+..
T Consensus 25 ~~~~~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~ 104 (223)
T 4dhe_A 25 PPTVQPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHINYFSVGPAAEPVAHLVDLPGYGYAEVPGAAKAHWEQ 104 (223)
T ss_dssp CCCCSCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCEEEEEESCTTSCSEEEEECCCCCSSCCCSTHHHHHHH
T ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccceEEEEecCCCCCcEEEEcCCCCCcccCChhhHHHHHH
Confidence 445678999999999999999999998863211111111111 1122333 33356899999994 33344
Q ss_pred cccccccC---CcEEEEEEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCcccccCcc
Q 044772 86 LRPLSYRG---ADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKDRQ 144 (159)
Q Consensus 86 ~~~~~~~~---~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~r~ 144 (159)
.+..++.. ++++++|+|..+..+.. .. .|+..+.. .+.|+++|+||+|+...+.
T Consensus 105 ~~~~~~~~~~~~d~vi~v~d~~~~~~~~--~~-~~~~~l~~--~~~p~i~v~nK~Dl~~~~~ 161 (223)
T 4dhe_A 105 LLSSYLQTRPQLCGMILMMDARRPLTEL--DR-RMIEWFAP--TGKPIHSLLTKCDKLTRQE 161 (223)
T ss_dssp HHHHHHHHCTTEEEEEEEEETTSCCCHH--HH-HHHHHHGG--GCCCEEEEEECGGGSCHHH
T ss_pred HHHHHHhcCcCcCEEEEEEeCCCCCCHH--HH-HHHHHHHh--cCCCEEEEEeccccCChhh
Confidence 45555544 78899999998753322 22 55555554 4689999999999976544
No 128
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=99.79 E-value=1.2e-19 Score=135.25 Aligned_cols=117 Identities=15% Similarity=0.149 Sum_probs=81.7
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccce-eeeeEEEEEECCeEEEEEEEeCCCccccccc----------ccc
Q 044772 21 KFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTV-FDNFSANVMVDGRTVNLGLWDTAGQEDYNRL----------RPL 89 (159)
Q Consensus 21 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~----------~~~ 89 (159)
+.++|+++|++|+|||||+++|.+..+...+.++. .......+..++. .+.+||+||+..+... ...
T Consensus 2 ~~~~I~lvG~~n~GKSTLin~l~g~~~~v~~~~g~t~~~~~~~~~~~~~--~~~liDtpG~~~~~~~~~~~~~~e~i~~~ 79 (274)
T 3i8s_A 2 KKLTIGLIGNPNSGKTTLFNQLTGSRQRVGNWAGVTVERKEGQFSTTDH--QVTLVDLPGTYSLTTISSQTSLDEQIACH 79 (274)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHTTCEEEEECTTSSSEEEEEEEECSSC--EEEEEECCCCSCSCC----CCHHHHHHHH
T ss_pred CccEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeeEEEEEEEEEeCCC--ceEEEECcCCCccccccccCCHHHHHHHH
Confidence 35899999999999999999999887543333332 2222334444443 5789999998876632 223
Q ss_pred cc--cCCcEEEEEEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCcccccCcccc
Q 044772 90 SY--RGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKDRQFH 146 (159)
Q Consensus 90 ~~--~~~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~r~v~ 146 (159)
++ ..+|++|+|+|+++.++...+. .++. .. ++|+++|+||+|+.+.+.+.
T Consensus 80 ~~~~~~~d~ii~VvD~~~~~~~~~~~--~~l~---~~--~~p~ivv~NK~Dl~~~~~~~ 131 (274)
T 3i8s_A 80 YILSGDADLLINVVDASNLERNLYLT--LQLL---EL--GIPCIVALNMLDIAEKQNIR 131 (274)
T ss_dssp HHHHTCCSEEEEEEEGGGHHHHHHHH--HHHH---HH--TCCEEEEEECHHHHHHTTEE
T ss_pred HHhhcCCCEEEEEecCCChHHHHHHH--HHHH---hc--CCCEEEEEECccchhhhhHH
Confidence 33 7899999999999876655433 3333 32 68999999999997765544
No 129
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=99.79 E-value=2.8e-19 Score=132.77 Aligned_cols=120 Identities=14% Similarity=0.128 Sum_probs=82.9
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCCC--CCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccccc-------cc-
Q 044772 21 KFIKCVTVRDGAVGKTCLLISYTGNTFP--TDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRLRP-------LS- 90 (159)
Q Consensus 21 ~~~ki~vvG~~~~GKSsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~-------~~- 90 (159)
..++|+++|.+|+|||||+++|++..+. ..+.++...........++ ..+.+|||||...+..... .+
T Consensus 38 ~~~~I~vvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~l~iiDTpG~~~~~~~~~~~~~~i~~~~ 115 (270)
T 1h65_A 38 NSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAG--FTLNIIDTPGLIEGGYINDMALNIIKSFL 115 (270)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEEEEETT--EEEEEEECCCSEETTEECHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeeEEEEEeeCC--eEEEEEECCCCCCCccchHHHHHHHHHHh
Confidence 5789999999999999999999988753 2223332222222333333 5699999999876653322 11
Q ss_pred -ccCCcEEEEEEeCCChhhHHhhhhhhHHHHHhhhCC-C--CCEEEEeeCcccccCcc
Q 044772 91 -YRGADVFILAFSLISRPSYENISKKKWVPELRHYAP-S--VPIVLVGTKLDLRKDRQ 144 (159)
Q Consensus 91 -~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~~-~--~piilv~nK~Dl~~~r~ 144 (159)
...+|++++|||++.. ++..... .|+..+..... + .|+++|+||+|+...+.
T Consensus 116 ~~~~~d~il~v~~~d~~-~~~~~~~-~~~~~l~~~~~~~~~~~iivV~nK~Dl~~~~~ 171 (270)
T 1h65_A 116 LDKTIDVLLYVDRLDAY-RVDNLDK-LVAKAITDSFGKGIWNKAIVALTHAQFSPPDG 171 (270)
T ss_dssp TTCEECEEEEEEESSCC-CCCHHHH-HHHHHHHHHHCGGGGGGEEEEEECCSCCCGGG
T ss_pred hcCCCCEEEEEEeCCCC-cCCHHHH-HHHHHHHHHhCcccccCEEEEEECcccCCcCC
Confidence 3469999999999763 4554444 77777766532 2 69999999999975543
No 130
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=99.79 E-value=3.4e-19 Score=130.92 Aligned_cols=120 Identities=15% Similarity=0.094 Sum_probs=74.6
Q ss_pred CCcceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccc---eeeeeEEEEEECCeEEEEEEEeCCCc--------ccccc
Q 044772 17 TTATKFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPT---VFDNFSANVMVDGRTVNLGLWDTAGQ--------EDYNR 85 (159)
Q Consensus 17 ~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t---~~~~~~~~~~~~~~~~~~~i~D~~g~--------~~~~~ 85 (159)
......+||+|+|.+|||||||+|+|++.++.....+. ...........++ ..+.+|||||. +.+..
T Consensus 16 ~~~~~~l~I~lvG~~g~GKSSlin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~~ 93 (247)
T 3lxw_A 16 FQGESTRRLILVGRTGAGKSATGNSILGQRRFFSRLGATSVTRACTTGSRRWDK--CHVEVVDTPDIFSSQVSKTDPGCE 93 (247)
T ss_dssp ----CEEEEEEESSTTSSHHHHHHHHHTSCCC---------CCSCEEEEEEETT--EEEEEEECCSCSSTTHHHHSTTSH
T ss_pred ccCCCceEEEEECCCCCcHHHHHHHHhCCCCccccCCCCCccccEEEEEEEECC--cEEEEEECCCCCCCCCCcHHHHHH
Confidence 34457899999999999999999999988765332222 1121223344455 45899999996 33333
Q ss_pred cccccc----cCCcEEEEEEeCCChhhHHhhhhhhHHHHHhhhC----CCCCEEEEeeCcccccC
Q 044772 86 LRPLSY----RGADVFILAFSLISRPSYENISKKKWVPELRHYA----PSVPIVLVGTKLDLRKD 142 (159)
Q Consensus 86 ~~~~~~----~~~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~----~~~piilv~nK~Dl~~~ 142 (159)
....++ +.+|++|+|+|+++ +..... .+++.+.... .+.|++|++||+|+.+.
T Consensus 94 ~i~~~~~~~~~~~d~il~V~d~~~---~~~~~~-~~~~~l~~~~~~~~~~~~iilv~nK~Dl~~~ 154 (247)
T 3lxw_A 94 ERGHCYLLSAPGPHALLLVTQLGR---FTAQDQ-QAVRQVRDMFGEDVLKWMVIVFTRKEDLAGG 154 (247)
T ss_dssp HHHHHHHHHTTCCSEEEEEEETTB---CCHHHH-HHHHHHHHHHCGGGGGGEEEEEECGGGGTTC
T ss_pred HHHHHHHhcCCCCCEEEEEEeCCC---CCHHHH-HHHHHHHHHhChhhhccEEEEEEchHhcCCC
Confidence 233333 89999999999974 222221 2333333321 26899999999999653
No 131
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=99.78 E-value=2e-19 Score=137.30 Aligned_cols=79 Identities=14% Similarity=0.175 Sum_probs=66.9
Q ss_pred eEEEEEEEeCCCcccccccccccccCCcEEEEEEeCC----------ChhhHHhhhhhhHHHHHhhhC--CCCCEEEEee
Q 044772 68 RTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLI----------SRPSYENISKKKWVPELRHYA--PSVPIVLVGT 135 (159)
Q Consensus 68 ~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~----------~~~s~~~~~~~~~~~~i~~~~--~~~piilv~n 135 (159)
..+.+++||++|++.++..|.+|+++++++|+|||++ +..+|.+.. .|+..+.... .++|++|++|
T Consensus 159 ~~v~l~iwDtaGQe~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~--~~~~~i~~~~~~~~~piiLv~N 236 (340)
T 4fid_A 159 KDIPFHLIDVGGQRSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESI--AVFKDIMTNEFLKGAVKLIFLN 236 (340)
T ss_dssp SSCEEEEEECCSCHHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHH--HHHHHHHHCGGGTTSEEEEEEE
T ss_pred eeeeeccccCCCcccccccHHHHhccCCEEEEEEECCccccccccccccchHHHHH--HHHHHHhhhhccCCCeEEEEEE
Confidence 3467999999999999999999999999999999998 677888877 7777776543 6899999999
Q ss_pred CcccccCcccccc
Q 044772 136 KLDLRKDRQFHLD 148 (159)
Q Consensus 136 K~Dl~~~r~v~~~ 148 (159)
|+|+.+++....+
T Consensus 237 K~DL~~eki~~~~ 249 (340)
T 4fid_A 237 KMDLFEEKLTKVP 249 (340)
T ss_dssp CHHHHHHHHHHSC
T ss_pred CchhhhhhcCcch
Confidence 9999876664433
No 132
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=99.78 E-value=4.3e-19 Score=131.84 Aligned_cols=119 Identities=19% Similarity=0.105 Sum_probs=83.8
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeee-EEEEEECCeEEEEEEEeCCCcccccc------cccccc--
Q 044772 21 KFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNF-SANVMVDGRTVNLGLWDTAGQEDYNR------LRPLSY-- 91 (159)
Q Consensus 21 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~------~~~~~~-- 91 (159)
+.++|+++|++|||||||+++|.+..+...+.++..... ...+..++. .+.+||+||+..+.. ....++
T Consensus 2 ~~~~i~lvG~~g~GKTTL~n~l~g~~~~~~~~~~~t~~~~~~~~~~~~~--~~~l~DtpG~~~~~~~~~~~~~~~~~~~~ 79 (271)
T 3k53_A 2 VLKTVALVGNPNVGKTTIFNALTGLRQHVGNWPGVTVEKKEGIMEYREK--EFLVVDLPGIYSLTAHSIDELIARNFILD 79 (271)
T ss_dssp CCEEEEEEECSSSSHHHHHHHHHTTCEEEEECTTSSCEEEEEEEEETTE--EEEEEECCCCSCCCSSCHHHHHHHHHHHT
T ss_pred ceeEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeEEEeeEEEEEECCc--eEEEEeCCCccccccCCHHHHHHHHhhhc
Confidence 358999999999999999999998876433333333222 334455554 489999999987765 445555
Q ss_pred cCCcEEEEEEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCcccccCccccc
Q 044772 92 RGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKDRQFHL 147 (159)
Q Consensus 92 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~r~v~~ 147 (159)
.++|++++|+|.++.+... .|...+... ...|+++|+||+|+.+.+.+..
T Consensus 80 ~~~d~vi~v~D~~~~~~~~-----~~~~~~~~~-~~~p~ilv~NK~Dl~~~~~~~~ 129 (271)
T 3k53_A 80 GNADVIVDIVDSTCLMRNL-----FLTLELFEM-EVKNIILVLNKFDLLKKKGAKI 129 (271)
T ss_dssp TCCSEEEEEEEGGGHHHHH-----HHHHHHHHT-TCCSEEEEEECHHHHHHHTCCC
T ss_pred cCCcEEEEEecCCcchhhH-----HHHHHHHhc-CCCCEEEEEEChhcCcccccHH
Confidence 6899999999998754222 444444332 2389999999999876655543
No 133
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.78 E-value=1.1e-19 Score=143.46 Aligned_cols=120 Identities=17% Similarity=0.190 Sum_probs=86.0
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCCC--CCcccceeeeeEEEEEECCeEEEEEEEeCCCcc----------cccccc
Q 044772 20 TKFIKCVTVRDGAVGKTCLLISYTGNTFP--TDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQE----------DYNRLR 87 (159)
Q Consensus 20 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~----------~~~~~~ 87 (159)
...+||+++|.+|||||||+++|++..+. ..+.++..+.....+..++. .+.+|||+|+. .|....
T Consensus 173 ~~~~ki~lvG~~nvGKSSLin~l~~~~~~~~~~~~gtT~d~~~~~~~~~~~--~~~l~DT~G~~~~~~~~~~~e~~~~~~ 250 (436)
T 2hjg_A 173 EEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQ--EFVIVDTAGMRKKGKVYETTEKYSVLR 250 (436)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHTSTTEEEC---------CCEEEEETTE--EEEETTHHHHTCBTTBCCCCSHHHHHH
T ss_pred ccCcEEEEEcCCCCCHHHHHHHHhCCCceeecCCCCceeeeeEEEEEECCe--EEEEEECCCcCcCccccchHHHHHHHH
Confidence 35689999999999999999999988753 34444444444445566665 48999999973 333222
Q ss_pred c-ccccCCcEEEEEEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCcccccCcccc
Q 044772 88 P-LSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKDRQFH 146 (159)
Q Consensus 88 ~-~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~r~v~ 146 (159)
. .+++.+|++++|||+++..+++.. .|+..+.. .+.|+++|+||+|+.+.+.++
T Consensus 251 ~~~~~~~ad~~llv~D~~~~~s~~~~---~~~~~~~~--~~~~iiiv~NK~Dl~~~~~~~ 305 (436)
T 2hjg_A 251 ALKAIDRSEVVAVVLDGEEGIIEQDK---RIAGYAHE--AGKAVVIVVNKWDAVDKDEST 305 (436)
T ss_dssp HHHHHHHCSEEEEEEETTTCCCHHHH---HHHHHHHH--TTCEEEEEEECGGGSCCCTTH
T ss_pred HHHHHHhCCEEEEEEcCCcCCcHHHH---HHHHHHHH--cCCcEEEEEECccCCCcchHH
Confidence 2 367889999999999998887765 56666654 468999999999998766654
No 134
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=99.78 E-value=1.4e-18 Score=128.10 Aligned_cols=120 Identities=17% Similarity=0.116 Sum_probs=75.5
Q ss_pred CcceeeEEEEEcCCCCCHHHHHHHHhcCC-CCCCcccc--eeeeeEEEEEECCeEEEEEEEeCCCccccccccc------
Q 044772 18 TATKFIKCVTVRDGAVGKTCLLISYTGNT-FPTDYVPT--VFDNFSANVMVDGRTVNLGLWDTAGQEDYNRLRP------ 88 (159)
Q Consensus 18 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~-~~~~~~~t--~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~------ 88 (159)
+....++|+|+|++|||||||+++|++.. +...+.++ ........+..++ ..+.+|||||...+.....
T Consensus 18 ~~~~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~i~iiDTpG~~~~~~~~~~~~~~i 95 (260)
T 2xtp_A 18 ASRSELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGN--REIVIIDTPDMFSWKDHCEALYKEV 95 (260)
T ss_dssp ---CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEEEEETT--EEEEEEECCGGGGSSCCCHHHHHHH
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEEEEEeCC--CEEEEEECcCCCCCCCCHHHHHHHH
Confidence 34567999999999999999999999877 55444443 2222233444555 3589999999876543322
Q ss_pred -----ccccCCcEEEEEEeCCChhhHHhhhh--hhHHHHHhhhCCCCCEEEEee-CcccccC
Q 044772 89 -----LSYRGADVFILAFSLISRPSYENISK--KKWVPELRHYAPSVPIVLVGT-KLDLRKD 142 (159)
Q Consensus 89 -----~~~~~~~~~i~v~d~~~~~s~~~~~~--~~~~~~i~~~~~~~piilv~n-K~Dl~~~ 142 (159)
.+++.+|++|+|||+++ +..... ..|+..+.......|.++|.| |+|+.+.
T Consensus 96 ~~~~~~~~~~~d~il~V~d~~~---~~~~~~~~~~~l~~~~~~~~~~~~i~vv~nK~Dl~~~ 154 (260)
T 2xtp_A 96 QRCYLLSAPGPHVLLLVTQLGR---YTSQDQQAAQRVKEIFGEDAMGHTIVLFTHKEDLNGG 154 (260)
T ss_dssp HHHHHHHTTCCSEEEEEEETTC---CCHHHHHHHHHHHHHHCGGGGGGEEEEEECGGGGTTC
T ss_pred HHHHHhcCCCCcEEEEEEeCCC---CCHHHHHHHHHHHHHhCchhhccEEEEEEcccccCCc
Confidence 26789999999999985 222221 033333322111345555555 9999754
No 135
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=99.77 E-value=4.8e-19 Score=134.69 Aligned_cols=73 Identities=16% Similarity=0.254 Sum_probs=61.9
Q ss_pred EEEEEEEeCCCcccccccccccccCCcEEEEEEeCC----------ChhhHHhhhhhhHHHHHhhhC--CCCCEEEEeeC
Q 044772 69 TVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLI----------SRPSYENISKKKWVPELRHYA--PSVPIVLVGTK 136 (159)
Q Consensus 69 ~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~----------~~~s~~~~~~~~~~~~i~~~~--~~~piilv~nK 136 (159)
.+.+++||++|++.++..|.+|+++++++|+|||++ +..+|.+.. .|+..+.... .++|++|++||
T Consensus 166 ~v~l~iwDtgGQe~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~--~~~~~i~~~~~~~~~~iiL~~NK 243 (327)
T 3ohm_A 166 SVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESK--ALFRTIITYPWFQNSSVILFLNK 243 (327)
T ss_dssp TEEEEEEEECCSHHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHH--HHHHHHHTSGGGTTCEEEEEEEC
T ss_pred ceeeEEEEcCCchhHHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHH--HHHHHHhhhhccCCceEEEEEEC
Confidence 377999999999999999999999999999999665 566777666 7777776543 58999999999
Q ss_pred cccccCc
Q 044772 137 LDLRKDR 143 (159)
Q Consensus 137 ~Dl~~~r 143 (159)
+|+.+.|
T Consensus 244 ~DL~~~k 250 (327)
T 3ohm_A 244 KDLLEEK 250 (327)
T ss_dssp HHHHHHH
T ss_pred chhhhhh
Confidence 9998766
No 136
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.76 E-value=2.9e-18 Score=135.41 Aligned_cols=112 Identities=21% Similarity=0.194 Sum_probs=74.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCC--CCcccceeeeeEEEEEECCeEEEEEEEeCCCcccc---------cccccccc
Q 044772 23 IKCVTVRDGAVGKTCLLISYTGNTFP--TDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDY---------NRLRPLSY 91 (159)
Q Consensus 23 ~ki~vvG~~~~GKSsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~---------~~~~~~~~ 91 (159)
.+|+++|.+|||||||+|+|++++.. ..+.++..+.....+..++. .+.+|||+|.+.. ......++
T Consensus 2 ~~v~ivG~pnvGKStL~nrl~~~~~~~v~~~~g~T~d~~~~~~~~~~~--~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~ 79 (439)
T 1mky_A 2 ATVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGK--TFKLVDTCGVFDNPQDIISQKMKEVTLNMI 79 (439)
T ss_dssp CEEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEETTE--EEEEEECTTTTSSGGGCCCHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCceecCCCCCccceeeEEEEECCe--EEEEEECCCccccccchHHHHHHHHHHHHH
Confidence 47999999999999999999987742 33333333334455666665 4789999997642 23445678
Q ss_pred cCCcEEEEEEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCccccc
Q 044772 92 RGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRK 141 (159)
Q Consensus 92 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~ 141 (159)
+.+|++++|||+.+..++.......|+.. .+.|++||+||+|+.+
T Consensus 80 ~~ad~il~V~D~~~~~~~~d~~i~~~l~~-----~~~p~ilv~NK~D~~~ 124 (439)
T 1mky_A 80 READLVLFVVDGKRGITKEDESLADFLRK-----STVDTILVANKAENLR 124 (439)
T ss_dssp TTCSEEEEEEETTTCCCHHHHHHHHHHHH-----HTCCEEEEEESCCSHH
T ss_pred HhCCEEEEEEECCCCCCHHHHHHHHHHHH-----cCCCEEEEEeCCCCcc
Confidence 99999999999987555433211144432 2689999999999864
No 137
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.76 E-value=2.9e-19 Score=141.69 Aligned_cols=124 Identities=18% Similarity=0.205 Sum_probs=87.6
Q ss_pred cceeeEEEEEcCCCCCHHHHHHHHhcCCC--CCCcccceeeeeEEEEEECCeEEEEEEEeCCC----------ccccccc
Q 044772 19 ATKFIKCVTVRDGAVGKTCLLISYTGNTF--PTDYVPTVFDNFSANVMVDGRTVNLGLWDTAG----------QEDYNRL 86 (159)
Q Consensus 19 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g----------~~~~~~~ 86 (159)
....+||+++|.+|+|||||+++|++... ...+.++..+.....+..++. .+.+|||+| ++.+...
T Consensus 192 ~~~~~ki~ivG~~~vGKSslin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~--~~~l~DT~G~~~~~~~~~~~e~~~~~ 269 (456)
T 4dcu_A 192 NEEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQ--EFVIVDTAGMRKKGKVYETTEKYSVL 269 (456)
T ss_dssp CTTCEEEEEECSTTSSHHHHHHHHHTSTTEEECC------CTTSEEEEETTE--EEEETTGGGTTTBTTBCCCCSHHHHH
T ss_pred ccccceeEEecCCCCCHHHHHHHHhCCCccccCCCCCeEEEEEEEEEEECCc--eEEEEECCCCCcCcccchHHHHHHHH
Confidence 34578999999999999999999997652 234444444444555666665 589999999 5556554
Q ss_pred cc-ccccCCcEEEEEEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCcccccCccccccC
Q 044772 87 RP-LSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKDRQFHLDY 149 (159)
Q Consensus 87 ~~-~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~r~v~~~~ 149 (159)
.. .+++.++++|+|+|+++..+.. .. .|+..+.. .+.|++||+||+|+.+.++++.++
T Consensus 270 ~~~~~~~~ad~~llviD~~~~~~~~--~~-~~~~~~~~--~~~~~ilv~NK~Dl~~~~~~~~~~ 328 (456)
T 4dcu_A 270 RALKAIDRSEVVAVVLDGEEGIIEQ--DK-RIAGYAHE--AGKAVVIVVNKWDAVDKDESTMKE 328 (456)
T ss_dssp HHHHHHHHCSEEEEEEETTTCCCHH--HH-HHHHHHHH--TTCEEEEEEECGGGSCCCSSHHHH
T ss_pred HHHHHHhhCCEEEEEEeCCCCcCHH--HH-HHHHHHHH--cCCCEEEEEEChhcCCCchHHHHH
Confidence 44 3678999999999998754332 22 55555554 468999999999998877765543
No 138
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=99.75 E-value=2e-18 Score=132.79 Aligned_cols=73 Identities=16% Similarity=0.268 Sum_probs=63.3
Q ss_pred EEEEEEEeCCCcccccccccccccCCcEEEEEEeCCC----------hhhHHhhhhhhHHHHHhhh--CCCCCEEEEeeC
Q 044772 69 TVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLIS----------RPSYENISKKKWVPELRHY--APSVPIVLVGTK 136 (159)
Q Consensus 69 ~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~----------~~s~~~~~~~~~~~~i~~~--~~~~piilv~nK 136 (159)
.+.+++||++|++.+...|..|+++++++|||||+++ ..+|.+.. .|+..+... ..++|++|++||
T Consensus 192 ~~~l~iwDt~GQe~~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~--~~~~~i~~~~~~~~~piiLv~NK 269 (353)
T 1cip_A 192 DLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESM--KLFDSICNNKWFTDTSIILFLNK 269 (353)
T ss_dssp TEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHH--HHHHHHHTCGGGTTSEEEEEEEC
T ss_pred CeeEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHH--HHHHHHHcCccccCCcEEEEEEC
Confidence 4679999999999999999999999999999999998 45677777 788887764 268999999999
Q ss_pred cccccCc
Q 044772 137 LDLRKDR 143 (159)
Q Consensus 137 ~Dl~~~r 143 (159)
+|+.+++
T Consensus 270 ~DL~~~k 276 (353)
T 1cip_A 270 KDLFEEK 276 (353)
T ss_dssp HHHHHHH
T ss_pred cCchhhh
Confidence 9997544
No 139
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.75 E-value=5.2e-19 Score=140.25 Aligned_cols=128 Identities=19% Similarity=0.126 Sum_probs=74.3
Q ss_pred CCCCCCCCCcceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeee-EEEEEECCeEEEEEEEeCCC--------c
Q 044772 10 SSSTTTTTTATKFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNF-SANVMVDGRTVNLGLWDTAG--------Q 80 (159)
Q Consensus 10 ~~~~~~~~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g--------~ 80 (159)
|++..+........+|+++|.+|||||||+++|.+..+... ..+.+.+. ............+.+|||+| +
T Consensus 11 ~~~~~~~~~~m~~~~V~lvG~~nvGKSTL~n~l~~~~~~~v-~~~~g~t~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~ 89 (456)
T 4dcu_A 11 SSGLVPRGSHMGKPVVAIVGRPNVGKSTIFNRIAGERISIV-EDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFL 89 (456)
T ss_dssp ------------CCEEEEECSSSSSHHHHHHHHEEEEEC------------CEEEECTTCSSCCEEECCCC------CCH
T ss_pred cCCCCCChhhcCCCEEEEECCCCCcHHHHHHHHhCCCCccc-CCCCCcceeEEEEEEEECCceEEEEECCCCCCcchHHH
Confidence 33344444555678999999999999999999998765311 11222221 11223333345699999999 6
Q ss_pred ccccccccccccCCcEEEEEEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCcccccCc
Q 044772 81 EDYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKDR 143 (159)
Q Consensus 81 ~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~r 143 (159)
+.+......+++.+|++|+|+|..+. +..... .+...+.+ .+.|++||+||+|+.+.+
T Consensus 90 ~~~~~~~~~~~~~ad~il~VvD~~~~--~~~~d~-~l~~~l~~--~~~pvilV~NK~D~~~~~ 147 (456)
T 4dcu_A 90 AQIRQQAEIAMDEADVIIFMVNGREG--VTAADE-EVAKILYR--TKKPVVLAVNKLDNTEMR 147 (456)
T ss_dssp HHHHHHHHHHHHHCSEEEEEEESSSC--SCHHHH-HHHHHHTT--CCSCEEEEEECC------
T ss_pred HHHHHHHHhhHhhCCEEEEEEeCCCC--CChHHH-HHHHHHHH--cCCCEEEEEECccchhhh
Confidence 66666777888999999999998753 333331 33333333 478999999999987544
No 140
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=99.75 E-value=2.3e-18 Score=135.23 Aligned_cols=120 Identities=23% Similarity=0.252 Sum_probs=81.7
Q ss_pred CcceeeEEEEEcCCCCCHHHHHHHHhcCCCC--CCcccceeeeeEEEEEECCeEEEEEEEeCCCcccccccc-------c
Q 044772 18 TATKFIKCVTVRDGAVGKTCLLISYTGNTFP--TDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRLR-------P 88 (159)
Q Consensus 18 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~-------~ 88 (159)
+....++|+++|+.|+|||||+++|++..+. ..+.++........+...+. ..+.+|||+|++.+.... .
T Consensus 30 ~~~~~~kI~IvG~~~vGKSTLin~L~~~~~~~~~~~~gtT~d~~~~~~~~~~~-~~l~liDTpG~~d~~~l~~~~~~~~~ 108 (423)
T 3qq5_A 30 DAGFRRYIVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMELHPI-GPVTLVDTPGLDDVGELGRLRVEKAR 108 (423)
T ss_dssp --CCCEEEEEECSCSTTTTTTTTSSCC-------------CCCCEEEEEETTT-EEEEEEECSSTTCCCTTCCCCHHHHH
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHcCCCCccCCCCCeeeeeEEEEEEECCC-CeEEEEECcCCCcccchhHHHHHHHH
Confidence 3456789999999999999999999988763 23333333333445555554 268999999998876553 3
Q ss_pred ccccCCcEEEEEEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCcccccCccc
Q 044772 89 LSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKDRQF 145 (159)
Q Consensus 89 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~r~v 145 (159)
.++..+|++|+|||+....... .|+..+... ++|+++|+||+|+...+..
T Consensus 109 ~~l~~aD~vllVvD~~~~~~~~-----~~l~~l~~~--~~piIvV~NK~Dl~~~~~~ 158 (423)
T 3qq5_A 109 RVFYRADCGILVTDSAPTPYED-----DVVNLFKEM--EIPFVVVVNKIDVLGEKAE 158 (423)
T ss_dssp HHHTSCSEEEEECSSSCCHHHH-----HHHHHHHHT--TCCEEEECCCCTTTTCCCT
T ss_pred HHHhcCCEEEEEEeCCChHHHH-----HHHHHHHhc--CCCEEEEEeCcCCCCccHH
Confidence 3788999999999984332222 676666654 6899999999999876653
No 141
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=99.74 E-value=1.4e-18 Score=133.65 Aligned_cols=75 Identities=13% Similarity=0.162 Sum_probs=64.2
Q ss_pred eEEEEEEEeCCCcccccccccccccCCcEEEEEEeCC----------ChhhHHhhhhhhHHHHHhhh--CCCCCEEEEee
Q 044772 68 RTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLI----------SRPSYENISKKKWVPELRHY--APSVPIVLVGT 135 (159)
Q Consensus 68 ~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~----------~~~s~~~~~~~~~~~~i~~~--~~~~piilv~n 135 (159)
..+.+++||++|++.+...|..|+++++++|+|||++ +..+|.++. .|+..+... .+++|++||||
T Consensus 181 ~~v~l~iwDtaGQe~~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~--~~~~~i~~~~~~~~~piiLvgN 258 (354)
T 2xtz_A 181 SGEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETK--ELFDWVLKQPCFEKTSFMLFLN 258 (354)
T ss_dssp ---EEEEEEECCSTTGGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHH--HHHHHHHTCGGGSSCEEEEEEE
T ss_pred cceeeEEEECCCchhhhHHHHHHhCCCCEEEEEEECcccccccccccchhHHHHHH--HHHHHHHhccccCCCeEEEEEE
Confidence 5688999999999999999999999999999999998 778898887 888887764 36899999999
Q ss_pred CcccccCcc
Q 044772 136 KLDLRKDRQ 144 (159)
Q Consensus 136 K~Dl~~~r~ 144 (159)
|+|+.+++.
T Consensus 259 K~DL~~~k~ 267 (354)
T 2xtz_A 259 KFDIFEKKV 267 (354)
T ss_dssp CHHHHHHHT
T ss_pred Ccchhhhhc
Confidence 999976554
No 142
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=99.73 E-value=7.2e-18 Score=133.76 Aligned_cols=117 Identities=22% Similarity=0.273 Sum_probs=78.5
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCC--CCCcccceeeeeEEEEEECCeEEEEEEEeCCCcccccccc--------ccc
Q 044772 21 KFIKCVTVRDGAVGKTCLLISYTGNTF--PTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRLR--------PLS 90 (159)
Q Consensus 21 ~~~ki~vvG~~~~GKSsli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~--------~~~ 90 (159)
..++|+++|++|+|||||+|+|.+..+ .....++..+.....+.+++. .+.+|||+|...+...+ ..+
T Consensus 223 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g~--~v~liDT~G~~~~~~~ve~~gi~~~~~~ 300 (462)
T 3geh_A 223 TGLKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQLVVGGI--PVQVLDTAGIRETSDQVEKIGVERSRQA 300 (462)
T ss_dssp HCEEEEEEECTTSSHHHHHHHHHHHHBSCCSCCTTCCHHHHHHEEEETTE--EEEECC--------------------CC
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCeeEEEEEEEEEECCE--EEEEEECCccccchhHHHHHHHHHHhhh
Confidence 457899999999999999999997643 333334443333445566664 57999999976554332 346
Q ss_pred ccCCcEEEEEEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCcccccCcccc
Q 044772 91 YRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKDRQFH 146 (159)
Q Consensus 91 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~r~v~ 146 (159)
+..+|++++|||.+++.++... .|+..+. +.|+++|+||+|+...+.+.
T Consensus 301 ~~~aD~vl~VvD~s~~~~~~~~---~i~~~l~----~~piivV~NK~Dl~~~~~~~ 349 (462)
T 3geh_A 301 ANTADLVLLTIDAATGWTTGDQ---EIYEQVK----HRPLILVMNKIDLVEKQLIT 349 (462)
T ss_dssp CCSCSEEEEEEETTTCSCHHHH---HHHHHHT----TSCEEEEEECTTSSCGGGST
T ss_pred hhcCCEEEEEeccCCCCCHHHH---HHHHhcc----CCcEEEEEECCCCCcchhhH
Confidence 7899999999999987666542 5666554 37999999999998766654
No 143
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.73 E-value=2.3e-18 Score=135.82 Aligned_cols=115 Identities=20% Similarity=0.197 Sum_probs=71.3
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCC--CCcccceeeeeEEEEEECCeEEEEEEEeCCCcc--------cccccccccc
Q 044772 22 FIKCVTVRDGAVGKTCLLISYTGNTFP--TDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQE--------DYNRLRPLSY 91 (159)
Q Consensus 22 ~~ki~vvG~~~~GKSsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~--------~~~~~~~~~~ 91 (159)
..+|+++|.+|||||||+++|.+..+. ....++..+.... ........+.+|||+|++ .+...+..++
T Consensus 3 ~~~V~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~T~d~~~~--~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~ 80 (436)
T 2hjg_A 3 KPVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYS--SAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAM 80 (436)
T ss_dssp CCEEEEECSTTSSHHHHHHHHEEEECC-----------CEEE--ECTTCSSCCEEEC---------CHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCceeecCCCCCccceEEE--EEEECCceEEEEECCCCCCcchhHHHHHHHHHHHHH
Confidence 368999999999999999999987653 2222222121122 223223468999999985 4555667788
Q ss_pred cCCcEEEEEEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCcccccCc
Q 044772 92 RGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKDR 143 (159)
Q Consensus 92 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~r 143 (159)
+.+|++|+|+|+.+..++... .+...+.. .+.|++||+||+|+...+
T Consensus 81 ~~ad~il~vvD~~~~~~~~d~---~~~~~l~~--~~~pvilv~NK~D~~~~~ 127 (436)
T 2hjg_A 81 DEADVIIFMVNGREGVTAADE---EVAKILYR--TKKPVVLAVNKLDNTEMR 127 (436)
T ss_dssp HHCSEEEEEEETTTCSCHHHH---HHHHHHTT--CCSCEEEEEECCCC----
T ss_pred HhCCEEEEEEeCCCCCCHHHH---HHHHHHHH--cCCCEEEEEECccCccch
Confidence 999999999999876665432 33333332 478999999999997543
No 144
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=99.72 E-value=5.8e-18 Score=134.88 Aligned_cols=112 Identities=24% Similarity=0.259 Sum_probs=84.5
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCC--CCCcccceeeeeEEEEEECCeEEEEEEEeCCCcc-ccccc--------cccc
Q 044772 22 FIKCVTVRDGAVGKTCLLISYTGNTF--PTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQE-DYNRL--------RPLS 90 (159)
Q Consensus 22 ~~ki~vvG~~~~GKSsli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~-~~~~~--------~~~~ 90 (159)
.++|+++|.+|+|||||+|+|.+.++ ...+..|..+.....+.+++. .+.+|||+|.. .+... ...+
T Consensus 243 ~~kV~ivG~pnvGKSSLln~L~~~~~a~vs~~~gTT~d~~~~~i~~~g~--~~~l~DTaG~~~~~~~~ve~~gi~~~~~~ 320 (482)
T 1xzp_A 243 GLRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRGI--LFRIVDTAGVRSETNDLVERLGIERTLQE 320 (482)
T ss_dssp CEEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETTE--EEEEEESSCCCSSCCTTCCCCCHHHHHHH
T ss_pred CCEEEEECcCCCcHHHHHHHHHCCCCCccCCCCCeeeeeEEEEEecCCe--EEEEEECCCccccchhhHHHHHHHHHHHH
Confidence 48999999999999999999998753 445555555555556667764 58999999987 55432 2346
Q ss_pred ccCCcEEEEEEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCcccccC
Q 044772 91 YRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKD 142 (159)
Q Consensus 91 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~ 142 (159)
+..+|++|+|||++++.++... .+++.+ .+.|+++|+||+|+...
T Consensus 321 ~~~aD~vl~VvD~s~~~s~~~~---~il~~l----~~~piivV~NK~DL~~~ 365 (482)
T 1xzp_A 321 IEKADIVLFVLDASSPLDEEDR---KILERI----KNKRYLVVINKVDVVEK 365 (482)
T ss_dssp HHHCSEEEEEEETTSCCCHHHH---HHHHHH----TTSSEEEEEEECSSCCC
T ss_pred hhcccEEEEEecCCCCCCHHHH---HHHHHh----cCCCEEEEEECcccccc
Confidence 7889999999999988777654 333433 36899999999999653
No 145
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=99.71 E-value=2.2e-17 Score=127.31 Aligned_cols=73 Identities=15% Similarity=0.170 Sum_probs=57.4
Q ss_pred EEEEEEEeCCCcccccccccccccCCcEEEEEEeCCC----------hhhHHhhhhhhHHHHHhhh--CCCCCEEEEeeC
Q 044772 69 TVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLIS----------RPSYENISKKKWVPELRHY--APSVPIVLVGTK 136 (159)
Q Consensus 69 ~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~----------~~s~~~~~~~~~~~~i~~~--~~~~piilv~nK 136 (159)
.+.+++||++|++.+...|.+||++++++|||||+++ ..+|.++. .|+..+... ..++|++|++||
T Consensus 200 ~~~l~i~Dt~Gq~~~r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~--~~~~~i~~~~~~~~~piILv~NK 277 (362)
T 1zcb_A 200 NVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESL--NIFETIVNNRVFSNVSIILFLNK 277 (362)
T ss_dssp TEEEEEEEECC-------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHH--HHHHHHHTCGGGTTSEEEEEEEC
T ss_pred CeEEEEEeccchhhhhhhHHHHhCCCCEEEEEEECccccccccccccccHHHHHH--HHHHHHhcchhhCCCCEEEEEEC
Confidence 3679999999999999999999999999999999998 67888887 788887764 268999999999
Q ss_pred cccccCc
Q 044772 137 LDLRKDR 143 (159)
Q Consensus 137 ~Dl~~~r 143 (159)
+|+.+++
T Consensus 278 ~DL~~~k 284 (362)
T 1zcb_A 278 TDLLEEK 284 (362)
T ss_dssp HHHHHHH
T ss_pred hhhhhhh
Confidence 9997544
No 146
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.71 E-value=4.8e-18 Score=131.08 Aligned_cols=123 Identities=16% Similarity=0.179 Sum_probs=71.4
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCC-CCCCcc--------cceeeee-EEEEEECCeEEEEEEEeCCCc-------cc
Q 044772 20 TKFIKCVTVRDGAVGKTCLLISYTGNT-FPTDYV--------PTVFDNF-SANVMVDGRTVNLGLWDTAGQ-------ED 82 (159)
Q Consensus 20 ~~~~ki~vvG~~~~GKSsli~~l~~~~-~~~~~~--------~t~~~~~-~~~~~~~~~~~~~~i~D~~g~-------~~ 82 (159)
...++|+|+|++|+|||||+++|++.. +...+. ++.+..+ ...+..++..+.+.+||++|. +.
T Consensus 35 ~~~~~I~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~gd~~~~~e~ 114 (361)
T 2qag_A 35 GFEFTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDC 114 (361)
T ss_dssp CCEECEEECCCTTSCHHHHHHHHTTCCC---------------CEEEEEEEEC----CEEEEEEEEC-------------
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEEEEEEeecCCcccceEEEEeccccccCccHHH
Confidence 456899999999999999999987654 333322 3333222 222334566678999999998 55
Q ss_pred cccccc-------ccccCC-----------cEEEEEEeCCC-hhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCcccccCc
Q 044772 83 YNRLRP-------LSYRGA-----------DVFILAFSLIS-RPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKDR 143 (159)
Q Consensus 83 ~~~~~~-------~~~~~~-----------~~~i~v~d~~~-~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~r 143 (159)
+..++. .|+..+ ++.+++|++++ ..++..+.. .|+..+. .++|+++|+||+|+...+
T Consensus 115 ~~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~~~~l~~~d~-~~~~~l~---~~~piIlV~NK~Dl~~~~ 190 (361)
T 2qag_A 115 FKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDV-AFMKAIH---NKVNIVPVIAKADTLTLK 190 (361)
T ss_dssp -CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSSSSSCCHHHH-HHHHHTC---S-SCEEEEEECCSSSCHH
T ss_pred HHHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecCCCCcchhHH-HHHHHhc---cCCCEEEEEECCCCCCHH
Confidence 655554 444333 33346666664 456666654 5665553 578999999999998766
Q ss_pred ccc
Q 044772 144 QFH 146 (159)
Q Consensus 144 ~v~ 146 (159)
++.
T Consensus 191 ev~ 193 (361)
T 2qag_A 191 ERE 193 (361)
T ss_dssp HHH
T ss_pred HHH
Confidence 554
No 147
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=99.71 E-value=6.9e-19 Score=141.52 Aligned_cols=116 Identities=17% Similarity=0.182 Sum_probs=84.4
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeee-EEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEE
Q 044772 21 KFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNF-SANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL 99 (159)
Q Consensus 21 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~ 99 (159)
+..+|+++|++++|||||+++|.+..+...+.++....+ ...+..++ ...+.+|||||++.|..++..++..+|++|+
T Consensus 3 r~pkV~IvG~~~vGKTSLl~~L~~~~~~~~~~~giT~~i~~~~v~~~~-g~~i~~iDTPGhe~f~~~~~~~~~~aD~vIL 81 (537)
T 3izy_P 3 RSPVVTIMGHVDHGKTTLLDKLRKTQVAAMEAGGITQHIGAFLVSLPS-GEKITFLDTPGHAAFSAMRARGTQVTDIVIL 81 (537)
T ss_dssp CCCBCEEEESTTTTHHHHHHHHHHHHHHHSSSCCBCCCTTSCCBCSSC-SSCCBCEECSSSCCTTTSBBSSSBSBSSCEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcccccCCceeEEEeEEEEEeCC-CCEEEEEECCChHHHHHHHHHHHccCCEEEE
Confidence 567899999999999999999997765444333332222 11222211 1258999999999999999999999999999
Q ss_pred EEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCcccccC
Q 044772 100 AFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKD 142 (159)
Q Consensus 100 v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~ 142 (159)
|||+++....+... ++..+.. .++|++|++||+|+.+.
T Consensus 82 VVDa~dg~~~qt~e---~l~~~~~--~~vPiIVViNKiDl~~~ 119 (537)
T 3izy_P 82 VVAADDGVMKQTVE---SIQHAKD--AHVPIVLAINKCDKAEA 119 (537)
T ss_dssp ECBSSSCCCHHHHH---HHHHHHT--TTCCEEECCBSGGGTTT
T ss_pred EEECCCCccHHHHH---HHHHHHH--cCCcEEEEEeccccccc
Confidence 99999865554442 2232322 36899999999999753
No 148
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=99.70 E-value=1.4e-17 Score=132.84 Aligned_cols=127 Identities=13% Similarity=0.040 Sum_probs=79.7
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCCC--CCcc----------------------c-----ceeeee-EEEEEECCeE
Q 044772 20 TKFIKCVTVRDGAVGKTCLLISYTGNTFP--TDYV----------------------P-----TVFDNF-SANVMVDGRT 69 (159)
Q Consensus 20 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~--~~~~----------------------~-----t~~~~~-~~~~~~~~~~ 69 (159)
...+||+++|.+++|||||+++|++.... ..+. . ..+.+. .....++...
T Consensus 31 k~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~ 110 (483)
T 3p26_A 31 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHR 110 (483)
T ss_dssp CCEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEECSS
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEecCC
Confidence 45689999999999999999999865211 0000 0 001111 1111223334
Q ss_pred EEEEEEeCCCcccccccccccccCCcEEEEEEeCCChhhHHhhhhh---hHHHHHhhhCCCCCEEEEeeCcccccCcccc
Q 044772 70 VNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISRPSYENISKK---KWVPELRHYAPSVPIVLVGTKLDLRKDRQFH 146 (159)
Q Consensus 70 ~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~---~~~~~i~~~~~~~piilv~nK~Dl~~~r~v~ 146 (159)
..+.+||+||++.|......++..+|++|+|+|+++..++..+... .....+.......|++||+||+|+.+.++..
T Consensus 111 ~~~~iiDTPG~~~f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~~~~~~iIvviNK~Dl~~~~~~~ 190 (483)
T 3p26_A 111 ANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLIIAMNKMDNVDWSQQR 190 (483)
T ss_dssp CEEEEECCCCCGGGHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHHTTCCCEEEEEECGGGGTTCHHH
T ss_pred ceEEEEECCCcHHHHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHHcCCCcEEEEEECcCcccchHHH
Confidence 5799999999999998888999999999999999987654432100 1122222222335799999999998755443
No 149
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=99.70 E-value=2.1e-17 Score=122.94 Aligned_cols=118 Identities=16% Similarity=0.142 Sum_probs=72.8
Q ss_pred cceeeEEEEEcCCCCCHHHHHHHHhcCCC-CCCc-------ccceeeee-EEEEEECCeEEEEEEEeCCCccccc-----
Q 044772 19 ATKFIKCVTVRDGAVGKTCLLISYTGNTF-PTDY-------VPTVFDNF-SANVMVDGRTVNLGLWDTAGQEDYN----- 84 (159)
Q Consensus 19 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~-~~~~-------~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~----- 84 (159)
....++|+++|.+|+|||||+|+|++... ...+ .+|.+..+ ...+..++..+.+.+|||||...+.
T Consensus 5 ~g~~~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~~~~~~~ 84 (274)
T 3t5d_A 5 SGFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNC 84 (274)
T ss_dssp --CEEEEEEEECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC--CCEEEEEEECCCCSCCSCCTTT
T ss_pred CccEEEEEEECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEecCCeEEEEEEEECCCccccccchhh
Confidence 45679999999999999999999886654 3333 34444333 2233345555789999999973221
Q ss_pred --ccc-------cccc-------------cCCcEEEEEEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCccccc
Q 044772 85 --RLR-------PLSY-------------RGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRK 141 (159)
Q Consensus 85 --~~~-------~~~~-------------~~~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~ 141 (159)
.+. ..|+ ..+|+++++++.++. .+..... .++..+.. ++|+++|+||+|+..
T Consensus 85 ~~~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~-~~~~~d~-~~l~~l~~---~~pvi~V~nK~D~~~ 158 (274)
T 3t5d_A 85 WQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGH-GLKPLDI-EFMKRLHE---KVNIIPLIAKADTLT 158 (274)
T ss_dssp THHHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCS-SCCHHHH-HHHHHHTT---TSCEEEEESSGGGSC
T ss_pred HHHHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCC-CCCHHHH-HHHHHHhc---cCCEEEEEeccCCCC
Confidence 111 1111 237788888876643 2333332 56666655 799999999999864
No 150
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=99.70 E-value=1.3e-16 Score=122.95 Aligned_cols=122 Identities=17% Similarity=0.104 Sum_probs=84.6
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCCCC-CcccceeeeeEEEEEECCeEEEEEEEeCCCcccccc---------cccc
Q 044772 20 TKFIKCVTVRDGAVGKTCLLISYTGNTFPT-DYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNR---------LRPL 89 (159)
Q Consensus 20 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~---------~~~~ 89 (159)
...++++++|.+|||||||+++|.+..+.. .+..+........+..++ ..+.+||++|...... ....
T Consensus 165 ~~~~~v~lvG~~gvGKSTLin~L~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~ 242 (357)
T 2e87_A 165 LEIPTVVIAGHPNVGKSTLLKALTTAKPEIASYPFTTRGINVGQFEDGY--FRYQIIDTPGLLDRPISERNEIEKQAILA 242 (357)
T ss_dssp SSSCEEEEECSTTSSHHHHHHHHCSSCCEEECCTTCSSCEEEEEEEETT--EEEEEEECTTTSSSCSTTSCHHHHHHHHG
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCeeeceeEEEEEecC--ceEEEEeCCCccccchhhhhHHHHHHHHH
Confidence 356799999999999999999999876431 111111111122223333 5689999999754321 1112
Q ss_pred cccCCcEEEEEEeCCChh--hHHhhhhhhHHHHHhhhCCCCCEEEEeeCcccccCccc
Q 044772 90 SYRGADVFILAFSLISRP--SYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKDRQF 145 (159)
Q Consensus 90 ~~~~~~~~i~v~d~~~~~--s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~r~v 145 (159)
+...++++++|+|++++. ++.... .|+..+.....+.|+++|+||+|+...+.+
T Consensus 243 ~~~~ad~illV~D~s~~~~~~~~~~~--~~~~~i~~~~~~~piilV~NK~Dl~~~~~~ 298 (357)
T 2e87_A 243 LRYLGNLIIYIFDPSEHCGFPLEEQI--HLFEEVHGEFKDLPFLVVINKIDVADEENI 298 (357)
T ss_dssp GGGTCSEEEEEECTTCTTSSCHHHHH--HHHHHHHHHTTTSCEEEEECCTTTCCHHHH
T ss_pred HHhcCCEEEEEEeCCccccCCHHHHH--HHHHHHHHhcCCCCEEEEEECcccCChHHH
Confidence 345699999999998876 566555 888888776668999999999999765544
No 151
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=99.70 E-value=4.6e-17 Score=127.22 Aligned_cols=123 Identities=14% Similarity=-0.001 Sum_probs=85.3
Q ss_pred CcceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcc---cceeeee----EEEE---------EE---CCeEEEEEEEeCC
Q 044772 18 TATKFIKCVTVRDGAVGKTCLLISYTGNTFPTDYV---PTVFDNF----SANV---------MV---DGRTVNLGLWDTA 78 (159)
Q Consensus 18 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~---~t~~~~~----~~~~---------~~---~~~~~~~~i~D~~ 78 (159)
.....++|+++|++++|||||+++|.+........ .+..... .... .. ......+.+||+|
T Consensus 4 ~~~~~~~I~vvG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtP 83 (403)
T 3sjy_A 4 KVQPEVNIGVVGHVDHGKTTLVQAITGIWTSKKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFIDAP 83 (403)
T ss_dssp CCCCCCEEEEECSTTSSHHHHHHHHHSCCCCSSSEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEEEEEECC
T ss_pred ccCCCcEEEEECCCCCCHHHHHHHHhCcccccccCccccceeeccccccccceecccccccccccccccccceEEEEECC
Confidence 34567899999999999999999999754332100 0000000 0000 00 1123679999999
Q ss_pred CcccccccccccccCCcEEEEEEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCcccccCc
Q 044772 79 GQEDYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKDR 143 (159)
Q Consensus 79 g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~r 143 (159)
|++.|......++..+|++|+|+|+++..++.... .|+..+.... ..|+++|+||+|+.+..
T Consensus 84 Gh~~~~~~~~~~~~~~D~~ilVvda~~~~~~~qt~--~~~~~~~~~~-~~~iivviNK~Dl~~~~ 145 (403)
T 3sjy_A 84 GHEVLMATMLSGAALMDGAILVVAANEPFPQPQTR--EHFVALGIIG-VKNLIIVQNKVDVVSKE 145 (403)
T ss_dssp CCGGGHHHHHHHHTTCSEEEEEEETTSCSSCHHHH--HHHHHHHHHT-CCCEEEEEECGGGSCHH
T ss_pred CcHHHHHHHHHHHhhCCEEEEEEECCCCCCcHHHH--HHHHHHHHcC-CCCEEEEEECccccchH
Confidence 99999988888999999999999999876565555 5655554433 35899999999997644
No 152
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=99.69 E-value=1.3e-17 Score=127.71 Aligned_cols=116 Identities=22% Similarity=0.260 Sum_probs=83.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCC-CCcc-cceeeeeEEEEEECCeEEEEEEEeCCCccc----ccccccccc---cCC
Q 044772 24 KCVTVRDGAVGKTCLLISYTGNTFP-TDYV-PTVFDNFSANVMVDGRTVNLGLWDTAGQED----YNRLRPLSY---RGA 94 (159)
Q Consensus 24 ki~vvG~~~~GKSsli~~l~~~~~~-~~~~-~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~----~~~~~~~~~---~~~ 94 (159)
+|+|+|.+|||||||+++|.+.+.. ..+. .|..... ..+.+++. ..+.+||+||... +..+...++ ..+
T Consensus 160 ~V~lvG~~nvGKSTLln~L~~~~~~i~~~~ftTl~p~~-g~v~~~~~-~~~~l~DtPG~i~~a~~~~~l~~~fl~~i~~~ 237 (342)
T 1lnz_A 160 DVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNL-GMVETDDG-RSFVMADLPGLIEGAHQGVGLGHQFLRHIERT 237 (342)
T ss_dssp CEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCCCCE-EEEECSSS-CEEEEEEHHHHHHHTTCTTTTHHHHHHHHHHC
T ss_pred eeeeeCCCCCCHHHHHHHHHcCCCccccCCccccCceE-EEEEeCCC-ceEEEecCCCCcccccccchhHHHHHHHHHhc
Confidence 6889999999999999999977632 2332 2222222 23444432 3589999999633 333434444 459
Q ss_pred cEEEEEEeCCC---hhhHHhhhhhhHHHHHhhhC---CCCCEEEEeeCcccccCc
Q 044772 95 DVFILAFSLIS---RPSYENISKKKWVPELRHYA---PSVPIVLVGTKLDLRKDR 143 (159)
Q Consensus 95 ~~~i~v~d~~~---~~s~~~~~~~~~~~~i~~~~---~~~piilv~nK~Dl~~~r 143 (159)
+++|+|+|+++ ++.+..+. .|+.++..+. .+.|++||+||+|+...+
T Consensus 238 d~ll~VvD~s~~~~~~~~~~~~--~~~~eL~~~~~~l~~~p~ilV~NK~Dl~~~~ 290 (342)
T 1lnz_A 238 RVIVHVIDMSGLEGRDPYDDYL--TINQELSEYNLRLTERPQIIVANKMDMPEAA 290 (342)
T ss_dssp CEEEEEEESSCSSCCCHHHHHH--HHHHHHHHSCSSTTTSCBCBEEECTTSTTHH
T ss_pred cEEEEEEECCcccccChHHHHH--HHHHHHHHhhhhhcCCCEEEEEECccCCCCH
Confidence 99999999998 77888887 8888888775 479999999999997543
No 153
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.69 E-value=8.9e-17 Score=126.86 Aligned_cols=118 Identities=24% Similarity=0.236 Sum_probs=78.3
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCC--CCCcccceeeeeEEEEEECCeEEEEEEEeCCCcccccccc-----------
Q 044772 21 KFIKCVTVRDGAVGKTCLLISYTGNTF--PTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRLR----------- 87 (159)
Q Consensus 21 ~~~ki~vvG~~~~GKSsli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~----------- 87 (159)
..+||+++|++|||||||+++|++... ...+.++..+.....+.+++. .+.+||++|........
T Consensus 179 ~~~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~--~~~l~Dt~G~~~~~~~~~~~~e~~~~~~ 256 (439)
T 1mky_A 179 DAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGR--KYVFVDTAGLRRKSRVEPRTVEKYSNYR 256 (439)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTE--EEEESSCSCC-----------CCSCCHH
T ss_pred cCceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCE--EEEEEECCCCccccccchhhHHHHHHHH
Confidence 468999999999999999999998764 233333433333455667776 47899999974432211
Q ss_pred -cccccCCcEEEEEEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCcccccCccc
Q 044772 88 -PLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKDRQF 145 (159)
Q Consensus 88 -~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~r~v 145 (159)
..++..++++++++|+.+..++... .+...+.. .+.|+++|+||+|+.+.+.+
T Consensus 257 ~~~~i~~ad~vllv~d~~~~~~~~~~---~i~~~l~~--~~~~~ilv~NK~Dl~~~~~~ 310 (439)
T 1mky_A 257 VVDSIEKADVVVIVLDATQGITRQDQ---RMAGLMER--RGRASVVVFNKWDLVVHREK 310 (439)
T ss_dssp HHHHHHHCSEEEEEEETTTCCCHHHH---HHHHHHHH--TTCEEEEEEECGGGSTTGGG
T ss_pred HHHHHhhCCEEEEEEeCCCCCCHHHH---HHHHHHHH--cCCCEEEEEECccCCCchhh
Confidence 2345679999999999876665542 33333332 36899999999999876653
No 154
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=99.69 E-value=7.8e-17 Score=131.13 Aligned_cols=119 Identities=16% Similarity=0.178 Sum_probs=83.5
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcC--CCCCC-----cccce------eeee---EEEEEE---CCeEEEEEEEeCCCc
Q 044772 20 TKFIKCVTVRDGAVGKTCLLISYTGN--TFPTD-----YVPTV------FDNF---SANVMV---DGRTVNLGLWDTAGQ 80 (159)
Q Consensus 20 ~~~~ki~vvG~~~~GKSsli~~l~~~--~~~~~-----~~~t~------~~~~---~~~~~~---~~~~~~~~i~D~~g~ 80 (159)
....+|+++|+.++|||||+++|+.. .+... +..+. +.+. ...+.+ ++..+.+++|||||+
T Consensus 4 ~~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDTPGh 83 (600)
T 2ywe_A 4 KNVRNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTPGH 83 (600)
T ss_dssp GGEEEEEEECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECTTSCEEEEEEECCCCS
T ss_pred cCceEEEEECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEECCCc
Confidence 46789999999999999999999853 22110 00000 0000 011211 455688999999999
Q ss_pred ccccccccccccCCcEEEEEEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCcccccCc
Q 044772 81 EDYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKDR 143 (159)
Q Consensus 81 ~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~r 143 (159)
..|...+..++..+|++|+|+|+++..+++... .|..... .++|+++|+||+|+...+
T Consensus 84 ~dF~~ev~r~l~~aD~aILVVDa~~gv~~qt~~--~~~~a~~---~~ipiIvviNKiDl~~a~ 141 (600)
T 2ywe_A 84 VDFSYEVSRALAACEGALLLIDASQGIEAQTVA--NFWKAVE---QDLVIIPVINKIDLPSAD 141 (600)
T ss_dssp GGGHHHHHHHHHTCSEEEEEEETTTBCCHHHHH--HHHHHHH---TTCEEEEEEECTTSTTCC
T ss_pred HhHHHHHHHHHHhCCEEEEEEECCCCccHHHHH--HHHHHHH---CCCCEEEEEeccCccccC
Confidence 999988888899999999999999887777765 6655443 378999999999997643
No 155
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=99.68 E-value=1.4e-16 Score=120.08 Aligned_cols=114 Identities=17% Similarity=0.110 Sum_probs=77.6
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCCC--CCcccceeeeeEEEEEECCeEEEEEEEeCCCcc---------ccccccc
Q 044772 20 TKFIKCVTVRDGAVGKTCLLISYTGNTFP--TDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQE---------DYNRLRP 88 (159)
Q Consensus 20 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~---------~~~~~~~ 88 (159)
.+..+|+++|++|+|||||+++|++.++. .....+........+..++ ..+.+|||||.. .+.....
T Consensus 6 ~r~~~VaIvG~~nvGKSTLln~L~g~~~~i~s~~~~tTr~~~~gi~~~~~--~~i~~iDTpG~~~~~~~~l~~~~~~~~~ 83 (301)
T 1ega_A 6 SYCGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGA--YQAIYVDTPGLHMEEKRAINRLMNKAAS 83 (301)
T ss_dssp CEEEEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEETT--EEEEEESSSSCCHHHHHHHHHHHTCCTT
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHCCCccccCCCCCcceeeEEEEEEECC--eeEEEEECcCCCccchhhHHHHHHHHHH
Confidence 35568999999999999999999988753 1111122221222233333 468999999987 3444556
Q ss_pred ccccCCcEEEEEEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCccccc
Q 044772 89 LSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRK 141 (159)
Q Consensus 89 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~ 141 (159)
.++..+|++++|+|.++ +.... .|+..... ..+.|+++++||+|+..
T Consensus 84 ~~l~~~D~vl~Vvd~~~---~~~~~--~~i~~~l~-~~~~P~ilvlNK~D~~~ 130 (301)
T 1ega_A 84 SSIGDVELVIFVVEGTR---WTPDD--EMVLNKLR-EGKAPVILAVNKVDNVQ 130 (301)
T ss_dssp SCCCCEEEEEEEEETTC---CCHHH--HHHHHHHH-SSSSCEEEEEESTTTCC
T ss_pred HHHhcCCEEEEEEeCCC---CCHHH--HHHHHHHH-hcCCCEEEEEECcccCc
Confidence 78899999999999876 33333 33322222 13689999999999976
No 156
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=99.68 E-value=4.3e-17 Score=132.77 Aligned_cols=118 Identities=15% Similarity=0.134 Sum_probs=80.8
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCC--CCC-----Ccccc------eeeee-E--EEEEE---CCeEEEEEEEeCCCcc
Q 044772 21 KFIKCVTVRDGAVGKTCLLISYTGNT--FPT-----DYVPT------VFDNF-S--ANVMV---DGRTVNLGLWDTAGQE 81 (159)
Q Consensus 21 ~~~ki~vvG~~~~GKSsli~~l~~~~--~~~-----~~~~t------~~~~~-~--~~~~~---~~~~~~~~i~D~~g~~ 81 (159)
...+|+++|+.++|||||+++|+... +.. .+..+ .+.+. . ..+.+ ++..+.+++|||||+.
T Consensus 3 ~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh~ 82 (599)
T 3cb4_D 3 NIRNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGHV 82 (599)
T ss_dssp TEEEEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECCCCG
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCch
Confidence 46799999999999999999998632 111 00011 11111 1 11222 4556889999999999
Q ss_pred cccccccccccCCcEEEEEEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCcccccCc
Q 044772 82 DYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKDR 143 (159)
Q Consensus 82 ~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~r 143 (159)
.|...+..++..+|++|+|+|+++..+++... .|...+. .++|+++|+||+|+...+
T Consensus 83 dF~~ev~~~l~~aD~aILVVDa~~gv~~qt~~--~~~~~~~---~~ipiIvViNKiDl~~a~ 139 (599)
T 3cb4_D 83 DFSYEVSRSLAACEGALLVVDAGQGVEAQTLA--NCYTAME---MDLEVVPVLNKIDLPAAD 139 (599)
T ss_dssp GGHHHHHHHHHHCSEEEEEEETTTCCCTHHHH--HHHHHHH---TTCEEEEEEECTTSTTCC
T ss_pred HHHHHHHHHHHHCCEEEEEEECCCCCCHHHHH--HHHHHHH---CCCCEEEeeeccCccccc
Confidence 99998889999999999999999877777665 6655543 368999999999997643
No 157
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=99.67 E-value=1.4e-16 Score=129.72 Aligned_cols=114 Identities=19% Similarity=0.165 Sum_probs=80.5
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCc----ccceeeeeEEEEE-------------ECCeEEEEEEEeCCCccc
Q 044772 20 TKFIKCVTVRDGAVGKTCLLISYTGNTFPTDY----VPTVFDNFSANVM-------------VDGRTVNLGLWDTAGQED 82 (159)
Q Consensus 20 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~----~~t~~~~~~~~~~-------------~~~~~~~~~i~D~~g~~~ 82 (159)
.+..+|+++|++++|||||+++|.+..+.... ..+.+..+..... .+.....+.+|||||++.
T Consensus 3 ~r~~~V~IvGh~d~GKTTLl~~L~~~~v~~~e~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGhe~ 82 (594)
T 1g7s_A 3 IRSPIVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEA 82 (594)
T ss_dssp ECCCEEEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSC
T ss_pred CCCcEEEEECCCCCcHHHHHHHHhcccCccccCCceecccCeEEEeechhhhhccccccccccccccCCEEEEECCCcHH
Confidence 45679999999999999999999876543221 1122211110000 000112489999999999
Q ss_pred ccccccccccCCcEEEEEEeCCC---hhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCccccc
Q 044772 83 YNRLRPLSYRGADVFILAFSLIS---RPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRK 141 (159)
Q Consensus 83 ~~~~~~~~~~~~~~~i~v~d~~~---~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~ 141 (159)
|..++..++..+|++|+|||+++ ++++..+. ++. . .++|+++++||+|+..
T Consensus 83 F~~~~~r~~~~aD~aILVvDa~~Gv~~qT~e~l~---~l~---~--~~vPiIVViNKiDl~~ 136 (594)
T 1g7s_A 83 FTTLRKRGGALADLAILIVDINEGFKPQTQEALN---ILR---M--YRTPFVVAANKIDRIH 136 (594)
T ss_dssp CTTSBCSSSBSCSEEEEEEETTTCCCHHHHHHHH---HHH---H--TTCCEEEEEECGGGST
T ss_pred HHHHHHHHHhhCCEEEEEEECCCCccHhHHHHHH---HHH---H--cCCeEEEEeccccccc
Confidence 99999999999999999999998 66665442 221 1 3689999999999965
No 158
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=99.66 E-value=7.3e-16 Score=118.99 Aligned_cols=115 Identities=23% Similarity=0.176 Sum_probs=77.3
Q ss_pred eE-EEEEcCCCCCHHHHHHHHhcCCCCC-CcccceeeeeEEEEEECCeEEEEEEEeCCCcc---------cccccccccc
Q 044772 23 IK-CVTVRDGAVGKTCLLISYTGNTFPT-DYVPTVFDNFSANVMVDGRTVNLGLWDTAGQE---------DYNRLRPLSY 91 (159)
Q Consensus 23 ~k-i~vvG~~~~GKSsli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~---------~~~~~~~~~~ 91 (159)
++ |+++|.+|+|||||+++|.+..+.. .+..+.-+.....+.+++. .+.+||++|.- .|...+ ..+
T Consensus 179 ~~~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~--~v~l~DT~G~i~~lp~~lve~f~~tl-~~~ 255 (364)
T 2qtf_A 179 IPSIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNR--KIMLVDTVGFIRGIPPQIVDAFFVTL-SEA 255 (364)
T ss_dssp CCEEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTE--EEEEEECCCBCSSCCGGGHHHHHHHH-HGG
T ss_pred CcEEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCE--EEEEEeCCCchhcCCHHHHHHHHHHH-HHH
Confidence 44 9999999999999999999877532 2222222233456667773 57999999962 122222 246
Q ss_pred cCCcEEEEEEeCCChh--hHHhhhhhhHHHHHhhhC-CCCCEEEEeeCcccccC
Q 044772 92 RGADVFILAFSLISRP--SYENISKKKWVPELRHYA-PSVPIVLVGTKLDLRKD 142 (159)
Q Consensus 92 ~~~~~~i~v~d~~~~~--s~~~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~ 142 (159)
..+|.+++|+|++++. .+..+. .|.+.+.... .+.|+++|+||+|+...
T Consensus 256 ~~aD~il~VvD~s~~~~~~~~~~~--~~~~~L~~l~~~~~p~ilV~NK~Dl~~~ 307 (364)
T 2qtf_A 256 KYSDALILVIDSTFSENLLIETLQ--SSFEILREIGVSGKPILVTLNKIDKING 307 (364)
T ss_dssp GGSSEEEEEEETTSCHHHHHHHHH--HHHHHHHHHTCCSCCEEEEEECGGGCCS
T ss_pred HhCCEEEEEEECCCCcchHHHHHH--HHHHHHHHhCcCCCCEEEEEECCCCCCc
Confidence 7899999999998876 455444 5555555443 57899999999999654
No 159
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=99.66 E-value=4.7e-16 Score=122.79 Aligned_cols=120 Identities=12% Similarity=0.061 Sum_probs=77.4
Q ss_pred CcceeeEEEEEcCCCCCHHHHHHHHhcCCC--CCCc-----------------------------ccceeeeeEEEEEEC
Q 044772 18 TATKFIKCVTVRDGAVGKTCLLISYTGNTF--PTDY-----------------------------VPTVFDNFSANVMVD 66 (159)
Q Consensus 18 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~--~~~~-----------------------------~~t~~~~~~~~~~~~ 66 (159)
.....++|+++|++++|||||+++|+...- .... .+..... .....+.
T Consensus 13 ~~k~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid-~~~~~~~ 91 (439)
T 3j2k_7 13 PKKEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVE-VGRAYFE 91 (439)
T ss_pred CCCceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEE-EeEEEEe
Confidence 345678999999999999999999965421 1100 0001110 1111222
Q ss_pred CeEEEEEEEeCCCcccccccccccccCCcEEEEEEeCCChhh---HHhhh-hhhHHHHHhhhCCCCC-EEEEeeCcccc
Q 044772 67 GRTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISRPS---YENIS-KKKWVPELRHYAPSVP-IVLVGTKLDLR 140 (159)
Q Consensus 67 ~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s---~~~~~-~~~~~~~i~~~~~~~p-iilv~nK~Dl~ 140 (159)
.....+.+||+||++.|......++..+|++|+|+|+++... |.... ....+..+.. .++| +++++||+|+.
T Consensus 92 ~~~~~~~iiDTPGh~~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~--~~v~~iIvviNK~Dl~ 168 (439)
T 3j2k_7 92 TEKKHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKT--AGVKHLIVLINKMDDP 168 (439)
T ss_pred cCCeEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHHH--cCCCeEEEEeecCCCc
Confidence 233579999999999998888888999999999999987542 11110 0011211111 2566 99999999985
No 160
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=99.66 E-value=3.2e-17 Score=131.97 Aligned_cols=116 Identities=15% Similarity=0.082 Sum_probs=82.0
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCCC-----------------CCc------ccceeeeeEEEEEECCeEEEEEEEe
Q 044772 20 TKFIKCVTVRDGAVGKTCLLISYTGNTFP-----------------TDY------VPTVFDNFSANVMVDGRTVNLGLWD 76 (159)
Q Consensus 20 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~-----------------~~~------~~t~~~~~~~~~~~~~~~~~~~i~D 76 (159)
.+..+|+|+|++|+|||||+++|+..... ..+ ...........+..++ +.+++||
T Consensus 11 ~~~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~--~~i~liD 88 (528)
T 3tr5_A 11 AMRRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPYKD--YLINLLD 88 (528)
T ss_dssp HTEEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEETT--EEEEEEC
T ss_pred hcCCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEeCC--EEEEEEE
Confidence 46789999999999999999999721110 000 0000001112233333 5699999
Q ss_pred CCCcccccccccccccCCcEEEEEEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCcccccC
Q 044772 77 TAGQEDYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKD 142 (159)
Q Consensus 77 ~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~ 142 (159)
|||+..|......++..+|++|+|+|+++...+.... .| ..+.. .++|+++|+||+|+...
T Consensus 89 TPG~~df~~~~~~~l~~aD~allVvDa~~g~~~~t~~--~~-~~~~~--~~iPiivviNK~Dl~~~ 149 (528)
T 3tr5_A 89 TPGHADFTEDTYRTLTAVDSALMVIDAAKGVEPRTIK--LM-EVCRL--RHTPIMTFINKMDRDTR 149 (528)
T ss_dssp CCCSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHH--HH-HHHHT--TTCCEEEEEECTTSCCS
T ss_pred CCCchhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHH--HH-HHHHH--cCCCEEEEEeCCCCccc
Confidence 9999999998899999999999999999876666654 44 33332 36899999999999654
No 161
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=99.66 E-value=4.6e-17 Score=128.40 Aligned_cols=116 Identities=16% Similarity=0.148 Sum_probs=80.5
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcC--CCCCCc-------------------------------ccceeeeeEEEEEEC
Q 044772 20 TKFIKCVTVRDGAVGKTCLLISYTGN--TFPTDY-------------------------------VPTVFDNFSANVMVD 66 (159)
Q Consensus 20 ~~~~ki~vvG~~~~GKSsli~~l~~~--~~~~~~-------------------------------~~t~~~~~~~~~~~~ 66 (159)
...+||+++|+.++|||||+++|+.. .+.... ..|....+ ..++
T Consensus 4 k~~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~---~~~~ 80 (435)
T 1jny_A 4 KPHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTF---MRFE 80 (435)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC--------------CEEE
T ss_pred CCEEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeE---EEEe
Confidence 45689999999999999999999864 332110 01111111 1223
Q ss_pred CeEEEEEEEeCCCcccccccccccccCCcEEEEEEeCCChhhHHhhhhhhHHHHHhhhC-----CC-CCEEEEeeCcccc
Q 044772 67 GRTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYA-----PS-VPIVLVGTKLDLR 140 (159)
Q Consensus 67 ~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~-----~~-~piilv~nK~Dl~ 140 (159)
.....+.+||+||++.|......++..+|++|+|+|+++ .+|+... .|.....++. .+ .|+++++||+|+.
T Consensus 81 ~~~~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvDa~~-gsfe~~~--~~~~qt~~~~~~~~~~~~~~iivviNK~Dl~ 157 (435)
T 1jny_A 81 TKKYFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKK-GEYEAGM--SVEGQTREHIILAKTMGLDQLIVAVNKMDLT 157 (435)
T ss_dssp CSSCEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECST-THHHHHH--STTCHHHHHHHHHHHTTCTTCEEEEECGGGS
T ss_pred cCCeEEEEEECCCcHHHHHHHHhhhhhcCEEEEEEECCC-Ccccccc--ccchHHHHHHHHHHHcCCCeEEEEEEcccCC
Confidence 333569999999999999888889999999999999998 6777554 3333322221 13 4699999999997
Q ss_pred c
Q 044772 141 K 141 (159)
Q Consensus 141 ~ 141 (159)
+
T Consensus 158 ~ 158 (435)
T 1jny_A 158 E 158 (435)
T ss_dssp S
T ss_pred C
Confidence 6
No 162
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=99.66 E-value=4e-17 Score=130.34 Aligned_cols=115 Identities=16% Similarity=0.219 Sum_probs=80.4
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeee-EEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEE
Q 044772 20 TKFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNF-SANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADVFI 98 (159)
Q Consensus 20 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i 98 (159)
.+..+|+++|+.++|||||+++|.+..+.....+...... ...+..++ ..+.+|||||++.|..++..++..+|++|
T Consensus 2 ~R~~~V~IvGhvd~GKTTLl~~L~~~~v~~~e~~GIT~~i~~~~v~~~~--~~i~~iDTPGhe~f~~~~~~~~~~aD~aI 79 (501)
T 1zo1_I 2 PRAPVVTIMGHVDHGKTSLLEYIRSTKVASGEAGGITQHIGAYHVETEN--GMITFLDTPGHAAFTSMRARGAQATDIVV 79 (501)
T ss_dssp CCCCCEEEEESTTSSSHHHHHHHHHHHHSBTTBCCCCCCSSCCCCCTTS--SCCCEECCCTTTCCTTSBCSSSBSCSSEE
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHcCCCccccCCCeeEeEEEEEEEECC--EEEEEEECCCcHHHHHHHHHHHhhCCEEE
Confidence 3668999999999999999999987655433222111111 11222233 35899999999999999999999999999
Q ss_pred EEEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCccccc
Q 044772 99 LAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRK 141 (159)
Q Consensus 99 ~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~ 141 (159)
+|||+++....+.. .++..+.. .++|+++++||+|+..
T Consensus 80 LVVda~~g~~~qT~---e~l~~~~~--~~vPiIVviNKiDl~~ 117 (501)
T 1zo1_I 80 LVVAADDGVMPQTI---EAIQHAKA--AQVPVVVAVNKIDKPE 117 (501)
T ss_dssp EEEETTTBSCTTTH---HHHHHHHH--TTCCEEEEEECSSSST
T ss_pred EEeecccCccHHHH---HHHHHHHh--cCceEEEEEEeccccc
Confidence 99999874322222 22222222 3689999999999975
No 163
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.65 E-value=1.7e-15 Score=118.58 Aligned_cols=117 Identities=17% Similarity=0.115 Sum_probs=78.0
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCC---CCCCccc--ceeeeeEE-EEEE-------------C--C----eEEEEEE
Q 044772 20 TKFIKCVTVRDGAVGKTCLLISYTGNT---FPTDYVP--TVFDNFSA-NVMV-------------D--G----RTVNLGL 74 (159)
Q Consensus 20 ~~~~ki~vvG~~~~GKSsli~~l~~~~---~~~~~~~--t~~~~~~~-~~~~-------------~--~----~~~~~~i 74 (159)
...++|+++|+.++|||||+++|.+.. +...+.+ |....+.. .+.. + + ....+.+
T Consensus 6 ~~~~~I~iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~i 85 (408)
T 1s0u_A 6 QAEVNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLRRVSF 85 (408)
T ss_dssp CCCEEEEEESCTTSSHHHHHHHHHSCCCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEEEEEEE
T ss_pred CCceEEEEEcCCCCCHHHHHHHHhCCccccCcccccCCcEEEecccccccccccccccccccccccccCcccccccEEEE
Confidence 456899999999999999999998543 2222222 33333322 1111 1 1 1367999
Q ss_pred EeCCCcccccccccccccCCcEEEEEEeCCCh----hhHHhhhhhhHHHHHhhhCCCCCEEEEeeCcccccCc
Q 044772 75 WDTAGQEDYNRLRPLSYRGADVFILAFSLISR----PSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKDR 143 (159)
Q Consensus 75 ~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~----~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~r 143 (159)
||+||++.|.......+..+|++|+|+|+++. +++..+. . +.. ....|+++++||+|+.+.+
T Consensus 86 iDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~--~----~~~-l~~~~iivv~NK~Dl~~~~ 151 (408)
T 1s0u_A 86 VDSPGHETLMATMLSGASLMDGAILVIAANEPCPQPQTKEHLM--A----LEI-LGIDKIIIVQNKIDLVDEK 151 (408)
T ss_dssp EECSSHHHHHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHHH--H----HHH-TTCCCEEEEEECTTSSCTT
T ss_pred EECCCHHHHHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHHH--H----HHH-cCCCeEEEEEEccCCCCHH
Confidence 99999999988777778899999999999853 3333332 1 111 2235899999999997644
No 164
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=99.65 E-value=5.6e-16 Score=115.98 Aligned_cols=122 Identities=21% Similarity=0.236 Sum_probs=78.1
Q ss_pred cceeeEEEEEcCCCCCHHHHHHHHhcCCCCCC------ccccee--------------------eee-------------
Q 044772 19 ATKFIKCVTVRDGAVGKTCLLISYTGNTFPTD------YVPTVF--------------------DNF------------- 59 (159)
Q Consensus 19 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~------~~~t~~--------------------~~~------------- 59 (159)
....++|+|+|.+|||||||+++|++..+.+. ..|+.. ..+
T Consensus 23 ~~~~~~i~vvG~~~~GKSSLln~l~g~~~~~~~~~~~t~~p~~~~~~~~~~~~~~~~~~~g~~~tt~~~~~~~~~~~~~~ 102 (299)
T 2aka_B 23 DLDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDR 102 (299)
T ss_dssp TCCCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHH
T ss_pred CCCCCeEEEEeCCCCCHHHHHHHHHCCCcCCCCCCcccccceEEEEecCCcccchhhhcCCcccCCHHHHHHHHHHHHHH
Confidence 34568999999999999999999999887422 122200 000
Q ss_pred -----------EEEEEE-CCeEEEEEEEeCCCcc-------------cccccccccccCCcEEE-EEEeCCChhhHHhhh
Q 044772 60 -----------SANVMV-DGRTVNLGLWDTAGQE-------------DYNRLRPLSYRGADVFI-LAFSLISRPSYENIS 113 (159)
Q Consensus 60 -----------~~~~~~-~~~~~~~~i~D~~g~~-------------~~~~~~~~~~~~~~~~i-~v~d~~~~~s~~~~~ 113 (159)
...+.+ ......+.+|||||.. .+..+...++..++.+| +|+|+++..+.....
T Consensus 103 i~g~~~gi~~~~~~~~~~~~~~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~ 182 (299)
T 2aka_B 103 VTGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDAL 182 (299)
T ss_dssp HCSSTTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHH
T ss_pred hcccCCCccccceEEEEeCCCCCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcchhhhHHH
Confidence 000000 0012469999999964 23345566788888776 799998754433322
Q ss_pred hhhHHHHHhhhCCCCCEEEEeeCcccccCcc
Q 044772 114 KKKWVPELRHYAPSVPIVLVGTKLDLRKDRQ 144 (159)
Q Consensus 114 ~~~~~~~i~~~~~~~piilv~nK~Dl~~~r~ 144 (159)
.|+..+.. .+.|+++|+||+|+.+.+.
T Consensus 183 --~~~~~~~~--~~~~~i~V~NK~Dl~~~~~ 209 (299)
T 2aka_B 183 --KIAKEVDP--QGQRTIGVITKLDLMDEGT 209 (299)
T ss_dssp --HHHHHHCT--TCSSEEEEEECGGGSCTTC
T ss_pred --HHHHHhCC--CCCeEEEEEEccccCCCCc
Confidence 45554433 4689999999999976544
No 165
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=99.65 E-value=3.5e-16 Score=124.81 Aligned_cols=113 Identities=23% Similarity=0.172 Sum_probs=78.8
Q ss_pred CcceeeEEEEEcCCCCCHHHHHHHHhcCC-------CCCCcc--cceeeeeEEEEEECCeEEEEEEEeCCCccccccccc
Q 044772 18 TATKFIKCVTVRDGAVGKTCLLISYTGNT-------FPTDYV--PTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRLRP 88 (159)
Q Consensus 18 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~-------~~~~~~--~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~ 88 (159)
...+.++|+++|+.++|||||+++|.+.. +..... .|....+. .+..++ ..+.+||+||++.|.....
T Consensus 15 ~~m~~~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~-~~~~~~--~~i~iiDtPGh~~~~~~~~ 91 (482)
T 1wb1_A 15 MDFKNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFS-AFKLEN--YRITLVDAPGHADLIRAVV 91 (482)
T ss_dssp CCCEEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCC-EEEETT--EEEEECCCSSHHHHHHHHH
T ss_pred hcCCCCEEEEECCCCChHHHHHHHHHCCCcccccccccccccCccEEecceE-EEEECC--EEEEEEECCChHHHHHHHH
Confidence 34568999999999999999999999766 111111 12222222 233344 5699999999999988888
Q ss_pred ccccCCcEEEEEEeCCC---hhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCccccc
Q 044772 89 LSYRGADVFILAFSLIS---RPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRK 141 (159)
Q Consensus 89 ~~~~~~~~~i~v~d~~~---~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~ 141 (159)
.++..+|++|+|+|+++ ++++..+ ..+.. .++|+++|+||+|+.+
T Consensus 92 ~~~~~aD~~ilVvda~~g~~~qt~e~l------~~~~~--~~ip~IvviNK~Dl~~ 139 (482)
T 1wb1_A 92 SAADIIDLALIVVDAKEGPKTQTGEHM------LILDH--FNIPIIVVITKSDNAG 139 (482)
T ss_dssp HHTTSCCEEEEEEETTTCSCHHHHHHH------HHHHH--TTCCBCEEEECTTSSC
T ss_pred HHHhhCCEEEEEEecCCCccHHHHHHH------HHHHH--cCCCEEEEEECCCccc
Confidence 88999999999999987 3333332 22222 2588899999999975
No 166
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=99.65 E-value=3.4e-16 Score=124.45 Aligned_cols=118 Identities=16% Similarity=0.071 Sum_probs=68.5
Q ss_pred cceeeEEEEEcCCCCCHHHHHHHHhcC--CCCC-------------------------------CcccceeeeeEEEEEE
Q 044772 19 ATKFIKCVTVRDGAVGKTCLLISYTGN--TFPT-------------------------------DYVPTVFDNFSANVMV 65 (159)
Q Consensus 19 ~~~~~ki~vvG~~~~GKSsli~~l~~~--~~~~-------------------------------~~~~t~~~~~~~~~~~ 65 (159)
....++|+++|+.++|||||+++|+.. .+.. ....|+...+. .+..
T Consensus 40 ~k~~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~-~~~~ 118 (467)
T 1r5b_A 40 GKEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRA-YFET 118 (467)
T ss_dssp CCEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CC-EEEC
T ss_pred CCCeeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeE-EEec
Confidence 346789999999999999999999742 2210 00011111111 1222
Q ss_pred CCeEEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCh---hhHHhhhhhhHHHHHhhhC-CCCC-EEEEeeCcccc
Q 044772 66 DGRTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISR---PSYENISKKKWVPELRHYA-PSVP-IVLVGTKLDLR 140 (159)
Q Consensus 66 ~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~---~s~~~~~~~~~~~~i~~~~-~~~p-iilv~nK~Dl~ 140 (159)
++ ..+.+||+||++.|......++..+|++|+|+|+++. .+|.... .|.+.+.... .++| ++|++||+|+.
T Consensus 119 ~~--~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~--qt~e~l~~~~~~~vp~iivviNK~Dl~ 194 (467)
T 1r5b_A 119 EH--RRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGG--QTREHAVLARTQGINHLVVVINKMDEP 194 (467)
T ss_dssp SS--EEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTC--CHHHHHHHHHHTTCSSEEEEEECTTST
T ss_pred CC--eEEEEEECCCcHHHHHHHHhhcccCCEEEEEEeCCcCccccccCCCC--cHHHHHHHHHHcCCCEEEEEEECccCC
Confidence 33 5689999999999998888889999999999999976 3444322 3333322221 3677 99999999995
Q ss_pred c
Q 044772 141 K 141 (159)
Q Consensus 141 ~ 141 (159)
.
T Consensus 195 ~ 195 (467)
T 1r5b_A 195 S 195 (467)
T ss_dssp T
T ss_pred C
Confidence 3
No 167
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=99.64 E-value=6e-16 Score=126.51 Aligned_cols=120 Identities=15% Similarity=0.096 Sum_probs=79.0
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCc--------------------------------cc-ceeeeeEEEEEEC
Q 044772 20 TKFIKCVTVRDGAVGKTCLLISYTGNTFPTDY--------------------------------VP-TVFDNFSANVMVD 66 (159)
Q Consensus 20 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~--------------------------------~~-t~~~~~~~~~~~~ 66 (159)
...+||+++|++++|||||+++|++....-.. .. |.... ...+...
T Consensus 165 k~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~-~~~~~~~ 243 (611)
T 3izq_1 165 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSIC-TSHFSTH 243 (611)
T ss_dssp CCCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCS-CCEEECS
T ss_pred CCceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeee-eEEEecC
Confidence 45789999999999999999999966432110 00 11111 1122223
Q ss_pred CeEEEEEEEeCCCcccccccccccccCCcEEEEEEeCCChhh---HHhhhhhhHHHH--HhhhCCCCCEEEEeeCccccc
Q 044772 67 GRTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISRPS---YENISKKKWVPE--LRHYAPSVPIVLVGTKLDLRK 141 (159)
Q Consensus 67 ~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s---~~~~~~~~~~~~--i~~~~~~~piilv~nK~Dl~~ 141 (159)
...+.||||||++.|......++..+|++|+|+|+++... |.... .+... +.......|++||+||+|+.+
T Consensus 244 --~~~~~iiDTPG~e~f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~--qt~e~l~~~~~lgi~~iIVVvNKiDl~~ 319 (611)
T 3izq_1 244 --RANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDG--QTKEHMLLASSLGIHNLIIAMNKMDNVD 319 (611)
T ss_dssp --SCEEEEEECCSSSCHHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTS--HHHHHHHHHHTTTCCEEEEEEECTTTTT
T ss_pred --CceEEEEECCCCcccHHHHHHHHhhcCceEEEEECCCCcccccchhhh--HHHHHHHHHHHcCCCeEEEEEecccccc
Confidence 3568999999999999888899999999999999987431 11111 11111 111122345999999999987
Q ss_pred Ccc
Q 044772 142 DRQ 144 (159)
Q Consensus 142 ~r~ 144 (159)
.++
T Consensus 320 ~~~ 322 (611)
T 3izq_1 320 WSQ 322 (611)
T ss_dssp TCH
T ss_pred hhH
Confidence 443
No 168
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.64 E-value=9.8e-16 Score=120.77 Aligned_cols=118 Identities=18% Similarity=0.115 Sum_probs=77.7
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCC--CCC----------cccceeeee--------------------EEEEEECC
Q 044772 20 TKFIKCVTVRDGAVGKTCLLISYTGNTF--PTD----------YVPTVFDNF--------------------SANVMVDG 67 (159)
Q Consensus 20 ~~~~ki~vvG~~~~GKSsli~~l~~~~~--~~~----------~~~t~~~~~--------------------~~~~~~~~ 67 (159)
...+||+++|+.++|||||+++|+++.. ... ..++.+..+ .....+..
T Consensus 22 ~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~~~~ 101 (434)
T 1zun_B 22 KEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFST 101 (434)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEEC
T ss_pred CCceEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeEeec
Confidence 4568999999999999999999986541 111 111111000 00111222
Q ss_pred eEEEEEEEeCCCcccccccccccccCCcEEEEEEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCccccc
Q 044772 68 RTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRK 141 (159)
Q Consensus 68 ~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~ 141 (159)
....+.+||+||++.|......++..+|++|+|+|+++....+.. .|+..+... ...|+++|+||+|+.+
T Consensus 102 ~~~~~~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~~qt~---~~l~~~~~~-~~~~iIvviNK~Dl~~ 171 (434)
T 1zun_B 102 AKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQTQTR---RHSYIASLL-GIKHIVVAINKMDLNG 171 (434)
T ss_dssp SSEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSCHHHH---HHHHHHHHT-TCCEEEEEEECTTTTT
T ss_pred CCceEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCCcHHHH---HHHHHHHHc-CCCeEEEEEEcCcCCc
Confidence 335689999999999988888889999999999999976533322 343333322 1236999999999976
No 169
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=99.64 E-value=6.2e-16 Score=130.42 Aligned_cols=117 Identities=17% Similarity=0.133 Sum_probs=85.4
Q ss_pred cceeeEEEEEcCCCCCHHHHHHHHhcCC--CCCC----------------cccceeeeeE-EEEE------------ECC
Q 044772 19 ATKFIKCVTVRDGAVGKTCLLISYTGNT--FPTD----------------YVPTVFDNFS-ANVM------------VDG 67 (159)
Q Consensus 19 ~~~~~ki~vvG~~~~GKSsli~~l~~~~--~~~~----------------~~~t~~~~~~-~~~~------------~~~ 67 (159)
....+||+|+|+.++|||||+++|+... .... ...|+..... .... .++
T Consensus 16 ~~~~rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~~~~ 95 (842)
T 1n0u_A 16 VTNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDG 95 (842)
T ss_dssp GGGEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCS
T ss_pred cccccEEEEECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEecccccccccccccccC
Confidence 3567899999999999999999998641 1100 0011111111 1111 134
Q ss_pred eEEEEEEEeCCCcccccccccccccCCcEEEEEEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCcccc
Q 044772 68 RTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLR 140 (159)
Q Consensus 68 ~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~ 140 (159)
..+.+++|||||+..|...+..+++.+|++|+|||+.+..+++... .|..... .++|+++++||+|+.
T Consensus 96 ~~~~i~liDTPG~~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~--~~~~~~~---~~~p~ilviNK~D~~ 163 (842)
T 1n0u_A 96 NSFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTET--VLRQALG---ERIKPVVVINKVDRA 163 (842)
T ss_dssp SEEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHH--HHHHHHH---TTCEEEEEEECHHHH
T ss_pred CCceEEEEECcCchhhHHHHHHHHHhCCEEEEEEeCCCCCCHHHHH--HHHHHHH---cCCCeEEEEECCCcc
Confidence 4788999999999999999999999999999999999988887765 5544332 368999999999986
No 170
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=99.63 E-value=1.1e-15 Score=119.43 Aligned_cols=117 Identities=22% Similarity=0.189 Sum_probs=81.4
Q ss_pred cceeeEEEEEcCCCCCHHHHHHHHhcC--------CCCCCcc--------cceeeee-EEEEEECCeEEEEEEEeCCCcc
Q 044772 19 ATKFIKCVTVRDGAVGKTCLLISYTGN--------TFPTDYV--------PTVFDNF-SANVMVDGRTVNLGLWDTAGQE 81 (159)
Q Consensus 19 ~~~~~ki~vvG~~~~GKSsli~~l~~~--------~~~~~~~--------~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~ 81 (159)
....++|+++|++++|||||+++|.+. .+. .+. ...+.+. .....++.....+.+||+||++
T Consensus 8 ~~~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~-~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~~~iiDtpG~~ 86 (405)
T 2c78_A 8 TKPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVK-DYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHA 86 (405)
T ss_dssp -CCEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCC-CHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCSG
T ss_pred CCCeEEEEEEcCCCCCHHHHHHHHHhhhhhcCcccccc-chhhccCCHHHHHcCCCEEeeeeEeccCCeEEEEEECCChH
Confidence 345689999999999999999999873 221 110 0111111 1222333333568999999999
Q ss_pred cccccccccccCCcEEEEEEeCCChhhHHhhhhhhHHHHHhhhCCCCC-EEEEeeCccccc
Q 044772 82 DYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVP-IVLVGTKLDLRK 141 (159)
Q Consensus 82 ~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~p-iilv~nK~Dl~~ 141 (159)
.|......++..+|++|+|+|+++....+. . .|+..+.. .++| +++++||+|+.+
T Consensus 87 ~f~~~~~~~~~~aD~~ilVvda~~g~~~qt-~--~~l~~~~~--~~ip~iivviNK~Dl~~ 142 (405)
T 2c78_A 87 DYIKNMITGAAQMDGAILVVSAADGPMPQT-R--EHILLARQ--VGVPYIVVFMNKVDMVD 142 (405)
T ss_dssp GGHHHHHHHHTTCSSEEEEEETTTCCCHHH-H--HHHHHHHH--TTCCCEEEEEECGGGCC
T ss_pred HHHHHHHHHHHHCCEEEEEEECCCCCcHHH-H--HHHHHHHH--cCCCEEEEEEECccccC
Confidence 998888888999999999999987654333 2 55554443 2578 899999999975
No 171
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=99.62 E-value=6.9e-16 Score=124.27 Aligned_cols=119 Identities=15% Similarity=0.078 Sum_probs=79.0
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcc----------c----------ceeeee-EEEEEECCeEEEEEEEeCC
Q 044772 20 TKFIKCVTVRDGAVGKTCLLISYTGNTFPTDYV----------P----------TVFDNF-SANVMVDGRTVNLGLWDTA 78 (159)
Q Consensus 20 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~----------~----------t~~~~~-~~~~~~~~~~~~~~i~D~~ 78 (159)
.+.++|+++|++|+|||||+++|+...-..... . +.+... .....+....+.+++||||
T Consensus 11 ~~~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~liDTP 90 (529)
T 2h5e_A 11 AKRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYHDCLVNLLDTP 90 (529)
T ss_dssp HTEEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEETTEEEEEECCC
T ss_pred cCCCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEECCeEEEEEECC
Confidence 467899999999999999999999632110000 0 001110 0111222233679999999
Q ss_pred CcccccccccccccCCcEEEEEEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCcccccCc
Q 044772 79 GQEDYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKDR 143 (159)
Q Consensus 79 g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~r 143 (159)
|++.|......++..+|++|+|+|+++....... .++..+.. .++|+++++||+|+....
T Consensus 91 G~~df~~~~~~~l~~aD~~IlVvDa~~g~~~~t~---~~~~~~~~--~~ipiivviNK~Dl~~~~ 150 (529)
T 2h5e_A 91 GHEDFSEDTYRTLTAVDCCLMVIDAAKGVEDRTR---KLMEVTRL--RDTPILTFMNKLDRDIRD 150 (529)
T ss_dssp CSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHHH---HHHHHHTT--TTCCEEEEEECTTSCCSC
T ss_pred CChhHHHHHHHHHHHCCEEEEEEeCCccchHHHH---HHHHHHHH--cCCCEEEEEcCcCCcccc
Confidence 9999988888899999999999999875432221 33333322 378999999999997643
No 172
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=99.62 E-value=5e-15 Score=115.91 Aligned_cols=118 Identities=18% Similarity=0.141 Sum_probs=79.6
Q ss_pred cceeeEEEEEcCCCCCHHHHHHHHhcCC---CCCCccc--ceeeeeEE-EEEE-------------C--C----eEEEEE
Q 044772 19 ATKFIKCVTVRDGAVGKTCLLISYTGNT---FPTDYVP--TVFDNFSA-NVMV-------------D--G----RTVNLG 73 (159)
Q Consensus 19 ~~~~~ki~vvG~~~~GKSsli~~l~~~~---~~~~~~~--t~~~~~~~-~~~~-------------~--~----~~~~~~ 73 (159)
....++|+++|+.++|||||+++|.+.. +.....+ |....+.. .... + + ....+.
T Consensus 7 ~~~~~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~ 86 (410)
T 1kk1_A 7 RQAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVS 86 (410)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEE
T ss_pred CCCccEEEEECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEeeeeeecccccccccccccccccccCcccccccEEE
Confidence 4567999999999999999999998543 2222222 33333322 1111 0 1 136799
Q ss_pred EEeCCCcccccccccccccCCcEEEEEEeCCCh----hhHHhhhhhhHHHHHhhhCCCCCEEEEeeCcccccCc
Q 044772 74 LWDTAGQEDYNRLRPLSYRGADVFILAFSLISR----PSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKDR 143 (159)
Q Consensus 74 i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~----~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~r 143 (159)
+||+||++.|.......+..+|++|+|+|+++. +++..+. . +... ...|+++++||+|+.+..
T Consensus 87 iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~--~----~~~~-~~~~iivviNK~Dl~~~~ 153 (410)
T 1kk1_A 87 FIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLM--A----LQII-GQKNIIIAQNKIELVDKE 153 (410)
T ss_dssp EEECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHH--H----HHHH-TCCCEEEEEECGGGSCHH
T ss_pred EEECCChHHHHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHHH--H----HHHc-CCCcEEEEEECccCCCHH
Confidence 999999999887777778889999999999853 3333332 1 1111 235899999999997643
No 173
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=99.62 E-value=1.1e-15 Score=117.73 Aligned_cols=124 Identities=20% Similarity=0.177 Sum_probs=80.4
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccee---------------eeeE-------------------------
Q 044772 21 KFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVF---------------DNFS------------------------- 60 (159)
Q Consensus 21 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~---------------~~~~------------------------- 60 (159)
...+|+|+|++|||||||+++|.+..+.+....+.. ..+.
T Consensus 33 ~lp~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 112 (360)
T 3t34_A 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLQKIDDGTREYAEFLHLPRKKFTDFAAVRKEIQDETD 112 (360)
T ss_dssp CCCEEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCSCEEEEEEECSSCSCCEEEETTSTTCCBSCHHHHHHHHHHHHH
T ss_pred cCCEEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCcceEEEEecCCCcccceeeeecCCCcccCCHHHHHHHHHHHHH
Confidence 334999999999999999999999887433221110 0000
Q ss_pred -------------EEEEE-CCeEEEEEEEeCCCcccc-------------cccccccccCCcEEEEEEeCCChhhHHhhh
Q 044772 61 -------------ANVMV-DGRTVNLGLWDTAGQEDY-------------NRLRPLSYRGADVFILAFSLISRPSYENIS 113 (159)
Q Consensus 61 -------------~~~~~-~~~~~~~~i~D~~g~~~~-------------~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~ 113 (159)
..+.+ ......+.+||+||...+ ..+...|+.+++++|+|+|..+..... .
T Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~--~ 190 (360)
T 3t34_A 113 RETGRSKAISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLAT--S 190 (360)
T ss_dssp HTSCTTCCCCCSCEEEEEEETTSCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGG--C
T ss_pred HhcCCCCCcccceEEEEEeCCCCCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCC--H
Confidence 00010 011234889999998765 345567889999999999876543332 2
Q ss_pred hhhHHHHHhhhC-CCCCEEEEeeCcccccCcccccc
Q 044772 114 KKKWVPELRHYA-PSVPIVLVGTKLDLRKDRQFHLD 148 (159)
Q Consensus 114 ~~~~~~~i~~~~-~~~piilv~nK~Dl~~~r~v~~~ 148 (159)
.|+..+.... .+.|+++|+||+|+.+.+....+
T Consensus 191 --~~~~l~~~~~~~~~~~i~V~nK~Dl~~~~~~~~~ 224 (360)
T 3t34_A 191 --DAIKISREVDPSGDRTFGVLTKIDLMDKGTDAVE 224 (360)
T ss_dssp --HHHHHHHHSCTTCTTEEEEEECGGGCCTTCCSHH
T ss_pred --HHHHHHHHhcccCCCEEEEEeCCccCCCcccHHH
Confidence 4555444443 36799999999999766554433
No 174
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=99.62 E-value=6.9e-16 Score=127.76 Aligned_cols=116 Identities=16% Similarity=0.112 Sum_probs=82.7
Q ss_pred cceeeEEEEEcCCCCCHHHHHHHHhcC--CCCC------------------CcccceeeeeEEEEEECCeEEEEEEEeCC
Q 044772 19 ATKFIKCVTVRDGAVGKTCLLISYTGN--TFPT------------------DYVPTVFDNFSANVMVDGRTVNLGLWDTA 78 (159)
Q Consensus 19 ~~~~~ki~vvG~~~~GKSsli~~l~~~--~~~~------------------~~~~t~~~~~~~~~~~~~~~~~~~i~D~~ 78 (159)
..+..+|+++|++|+|||||+++|+.. .+.. .+..|.... ...+..+ .+.+++||||
T Consensus 9 ~~~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~-~~~~~~~--~~~i~liDTP 85 (691)
T 1dar_A 9 LKRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAA-VTTCFWK--DHRINIIDTP 85 (691)
T ss_dssp GGGEEEEEEEECTTSCHHHHHHHHHHHHCC----------------------------CC-EEEEEET--TEEEEEECCC
T ss_pred cccccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccc-eEEEEEC--CeEEEEEECc
Confidence 357799999999999999999999842 1110 011111111 1122223 3679999999
Q ss_pred CcccccccccccccCCcEEEEEEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCcccccC
Q 044772 79 GQEDYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKD 142 (159)
Q Consensus 79 g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~ 142 (159)
|+..|...+..++..+|++|+|+|+++..++.... .|... .. .++|+++|+||+|+...
T Consensus 86 G~~df~~~~~~~l~~aD~~ilVvDa~~g~~~~t~~--~~~~~-~~--~~~p~ivviNKiD~~~~ 144 (691)
T 1dar_A 86 GHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSET--VWRQA-EK--YKVPRIAFANKMDKTGA 144 (691)
T ss_dssp SSTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHH--HHHHH-HH--TTCCEEEEEECTTSTTC
T ss_pred CccchHHHHHHHHHHCCEEEEEEECCCCcchhhHH--HHHHH-HH--cCCCEEEEEECCCcccC
Confidence 99999888889999999999999999877776665 45432 22 37899999999999754
No 175
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=99.62 E-value=2.7e-16 Score=127.17 Aligned_cols=123 Identities=17% Similarity=0.134 Sum_probs=80.9
Q ss_pred cceeeEEEEEcCCCCCHHHHHHHHhcCCCC---CCcccceeeeeEEE------EEECCe---------------------
Q 044772 19 ATKFIKCVTVRDGAVGKTCLLISYTGNTFP---TDYVPTVFDNFSAN------VMVDGR--------------------- 68 (159)
Q Consensus 19 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~---~~~~~t~~~~~~~~------~~~~~~--------------------- 68 (159)
.....+|+|+|.+|+|||||+|+|++.++. ....++........ +..+..
T Consensus 62 ~~~~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T~~~~~i~~~~~~~i~~g~~l~~~~~~~~~~L~~~g~~~~~ 141 (550)
T 2qpt_A 62 FDGKPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTDCFVAVMHGETEGTVPGNALVVDPEKPFRKLNPFGNTFLN 141 (550)
T ss_dssp TSSCCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCSSCCCCSEEEEECCSSSEEECCC------------------CCCT
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHhCCccccCccCCCCccceEEEEEECCcccccCCceeeecCcccHHHHhhhcccccc
Confidence 345789999999999999999999998863 22233221100000 000000
Q ss_pred --E---------EEEEEEeCCCccc-----------ccccccccccCCcEEEEEEeCCChhhHHhhhhhhHHHHHhhhCC
Q 044772 69 --T---------VNLGLWDTAGQED-----------YNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAP 126 (159)
Q Consensus 69 --~---------~~~~i~D~~g~~~-----------~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~~ 126 (159)
. ..+.+|||||... |......++..+|++|+|+|+++........ .|+..+.. .
T Consensus 142 ~~~~~~~~~~ll~~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~~--~~l~~l~~--~ 217 (550)
T 2qpt_A 142 RFMCAQLPNQVLESISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFS--EAIGALRG--H 217 (550)
T ss_dssp TEEEEECCCHHHHHCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHHH--HHHHHTTT--C
T ss_pred cceEEeccccccCCEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHHH--HHHHHHHh--c
Confidence 0 2488999999764 3344455678899999999998754444443 66666543 2
Q ss_pred CCCEEEEeeCcccccCccc
Q 044772 127 SVPIVLVGTKLDLRKDRQF 145 (159)
Q Consensus 127 ~~piilv~nK~Dl~~~r~v 145 (159)
+.|+++|+||+|+...+++
T Consensus 218 ~~pvilVlNK~Dl~~~~el 236 (550)
T 2qpt_A 218 EDKIRVVLNKADMVETQQL 236 (550)
T ss_dssp GGGEEEEEECGGGSCHHHH
T ss_pred CCCEEEEEECCCccCHHHH
Confidence 5789999999999765443
No 176
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=99.61 E-value=1.3e-15 Score=118.89 Aligned_cols=116 Identities=19% Similarity=0.094 Sum_probs=78.1
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCC-------CCCC--cccc-e----eeee-EEEEEECCeEEEEEEEeCCCcccccc
Q 044772 21 KFIKCVTVRDGAVGKTCLLISYTGNT-------FPTD--YVPT-V----FDNF-SANVMVDGRTVNLGLWDTAGQEDYNR 85 (159)
Q Consensus 21 ~~~ki~vvG~~~~GKSsli~~l~~~~-------~~~~--~~~t-~----~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~ 85 (159)
..+||+++|+.++|||||+++|.+.. +... .... . +.+. .....+......+.+||+||++.|..
T Consensus 2 ~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~~~iiDtpG~~~f~~ 81 (397)
T 1d2e_A 2 PHVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHADYVK 81 (397)
T ss_dssp CEEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHHHHHH
T ss_pred CeEEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEeccCCeEEEEEECCChHHHHH
Confidence 35899999999999999999998641 1100 0000 0 0000 11122333335689999999999988
Q ss_pred cccccccCCcEEEEEEeCCChhhHHhhhhhhHHHHHhhhCCCCC-EEEEeeCccccc
Q 044772 86 LRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVP-IVLVGTKLDLRK 141 (159)
Q Consensus 86 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~p-iilv~nK~Dl~~ 141 (159)
....++..+|++|+|+|+++....+.. .++..+.. .++| +++++||+|+.+
T Consensus 82 ~~~~~~~~aD~~ilVvda~~g~~~qt~---e~l~~~~~--~~vp~iivviNK~Dl~~ 133 (397)
T 1d2e_A 82 NMITGTAPLDGCILVVAANDGPMPQTR---EHLLLARQ--IGVEHVVVYVNKADAVQ 133 (397)
T ss_dssp HHHHTSSCCSEEEEEEETTTCSCHHHH---HHHHHHHH--TTCCCEEEEEECGGGCS
T ss_pred HHHhhHhhCCEEEEEEECCCCCCHHHH---HHHHHHHH--cCCCeEEEEEECcccCC
Confidence 888889999999999999985444333 22233332 2578 789999999975
No 177
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=99.61 E-value=9.7e-16 Score=115.60 Aligned_cols=122 Identities=21% Similarity=0.217 Sum_probs=74.7
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCc------ccceeeeeEE--------------------------------
Q 044772 20 TKFIKCVTVRDGAVGKTCLLISYTGNTFPTDY------VPTVFDNFSA-------------------------------- 61 (159)
Q Consensus 20 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~------~~t~~~~~~~-------------------------------- 61 (159)
....+|+|+|.+|+|||||+++|++..+.+.. .++.......
T Consensus 22 ~~~~~I~vvG~~~~GKSTlln~l~g~~~lp~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (315)
T 1jwy_B 22 LDLPQIVVVGSQSSGKSSVLENIVGRDFLPRGSGIVTRRPLILQLTHLPIADDGSQTQEWGEFLHKPNDMFYDFSEIREE 101 (315)
T ss_dssp TCCCEEEEEECSSSSHHHHHHHHHTSCCCCC--------CEEEEEEECCCCTTSCCCCCEEEESSSTTCCBCCTHHHHHH
T ss_pred CCCCeEEEEcCCCCCHHHHHHHHHCCCcCCCCCCceeeeeEEEEEEeCCCcccccchhhhhhhhcccccccCCHHHHHHH
Confidence 45679999999999999999999988863221 1100000000
Q ss_pred --------------------EEE-ECCeEEEEEEEeCCCccc-------------ccccccccccCCcEEEEEEeCCChh
Q 044772 62 --------------------NVM-VDGRTVNLGLWDTAGQED-------------YNRLRPLSYRGADVFILAFSLISRP 107 (159)
Q Consensus 62 --------------------~~~-~~~~~~~~~i~D~~g~~~-------------~~~~~~~~~~~~~~~i~v~d~~~~~ 107 (159)
.+. .......+.+|||||... +......++..+|++++|+|.++..
T Consensus 102 i~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~~ 181 (315)
T 1jwy_B 102 IIRDTDRMTGKNKGISAQPINLKIYSPHVVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTD 181 (315)
T ss_dssp HHHHCC--------CCCCCEEEEEEETTSCSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSC
T ss_pred HHHHHHHhcCCCCCccCccEEEEEecCCCCCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCcc
Confidence 000 011123589999999743 3344566788999999999975432
Q ss_pred hHHhhhhhhHHHHHhhhCCCCCEEEEeeCcccccCcc
Q 044772 108 SYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKDRQ 144 (159)
Q Consensus 108 s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~r~ 144 (159)
+.......++..+.. .+.|+++|+||+|+.+.+.
T Consensus 182 -~~~~~~~~i~~~~~~--~~~~~i~v~NK~Dl~~~~~ 215 (315)
T 1jwy_B 182 -LANSDALQLAKEVDP--EGKRTIGVITKLDLMDKGT 215 (315)
T ss_dssp -STTCSHHHHHHHHCS--SCSSEEEEEECTTSSCSSC
T ss_pred -hhhhHHHHHHHHhCC--CCCcEEEEEcCcccCCcch
Confidence 111110023333322 3689999999999975443
No 178
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=99.61 E-value=1.6e-15 Score=125.61 Aligned_cols=120 Identities=11% Similarity=0.131 Sum_probs=81.6
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCCCC-Cccccee--------eeeEEEEEE-------------------------
Q 044772 20 TKFIKCVTVRDGAVGKTCLLISYTGNTFPT-DYVPTVF--------DNFSANVMV------------------------- 65 (159)
Q Consensus 20 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~-~~~~t~~--------~~~~~~~~~------------------------- 65 (159)
...++|+|+|.+|+|||||+|+|++..+.. ...|+.. .....+...
T Consensus 67 ~~~~~V~VvG~~naGKSSLlNaLlg~~~~~v~~~p~T~~~~~i~~g~~~~~t~~~~~g~~~~~~~~~~i~~~~~i~~~~~ 146 (695)
T 2j69_A 67 QGVFRLLVLGDMKRGKSTFLNALIGENLLPSDVNPCTAVLTVLRYGPEKKVTIHFNDGKSPQQLDFQNFKYKYTIDPAEA 146 (695)
T ss_dssp HCCEEEEEECCTTSCHHHHHHHHHTSSCSCCCCCTTTCCCEEEEECSSCEEEEEESSSCCCCEEEHHHHHHHSCCCHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCCCCccceEEEEeCCCCeEEEEEcCCCcccccChhhhhhhhcCCHHHH
Confidence 457899999999999999999999887532 2233221 000001111
Q ss_pred ---------------------CCeE--EEEEEEeCCCccc---ccccccccccCCcEEEEEEeCCChhhHHhhhhhhHHH
Q 044772 66 ---------------------DGRT--VNLGLWDTAGQED---YNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVP 119 (159)
Q Consensus 66 ---------------------~~~~--~~~~i~D~~g~~~---~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~ 119 (159)
+... ..+.+|||||... .......+++.+|++|+|+|++++.++.+.. .|..
T Consensus 147 ~~l~~~~~~~~~~v~~i~i~~p~~~l~~~l~LiDTPGl~~~~~~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~~--~l~~ 224 (695)
T 2j69_A 147 KKLEQEKKQAFPDVDYAVVEYPLTLLQKGIEIVDSPGLNDTEARNELSLGYVNNCHAILFVMRASQPCTLGERR--YLEN 224 (695)
T ss_dssp HHHHTSSCCSCTTEEEEEEEECCHHHHTTEEEEECCCHHHHHTCHHHHTHHHHSSSEEEEEEETTSTTCHHHHH--HHHH
T ss_pred HHHhhccccccccceEEEEEccchhccCCeEEEECCCCCchhhHHHHHHHHHHhCCEEEEEEeCCCccchhHHH--HHHH
Confidence 0000 2489999999654 2344567889999999999999887776664 5544
Q ss_pred HHhhhCCCCCEEEEeeCcccccCc
Q 044772 120 ELRHYAPSVPIVLVGTKLDLRKDR 143 (159)
Q Consensus 120 ~i~~~~~~~piilv~nK~Dl~~~r 143 (159)
.+.. .+.|+++|+||+|+...+
T Consensus 225 ~l~~--~~~~iiiVlNK~Dl~~~~ 246 (695)
T 2j69_A 225 YIKG--RGLTVFFLVNAWDQVRES 246 (695)
T ss_dssp HTTT--SCCCEEEEEECGGGGGGG
T ss_pred HHHh--hCCCEEEEEECccccccc
Confidence 4433 257899999999997554
No 179
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=99.60 E-value=1.7e-15 Score=120.11 Aligned_cols=115 Identities=14% Similarity=0.042 Sum_probs=78.0
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcC--CCCCC-------------------------------cccceeeeeEEEEEEC
Q 044772 20 TKFIKCVTVRDGAVGKTCLLISYTGN--TFPTD-------------------------------YVPTVFDNFSANVMVD 66 (159)
Q Consensus 20 ~~~~ki~vvG~~~~GKSsli~~l~~~--~~~~~-------------------------------~~~t~~~~~~~~~~~~ 66 (159)
...++|+++|++++|||||+++|++. .+... ...|....+. .++
T Consensus 5 ~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~---~~~ 81 (458)
T 1f60_A 5 KSHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALW---KFE 81 (458)
T ss_dssp CEEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCE---EEE
T ss_pred CceeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEE---EEe
Confidence 35689999999999999999999864 22110 0112221111 223
Q ss_pred CeEEEEEEEeCCCcccccccccccccCCcEEEEEEeCCChh---hHH---hhhhhhHHHHHhhhCCCCC-EEEEeeCccc
Q 044772 67 GRTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISRP---SYE---NISKKKWVPELRHYAPSVP-IVLVGTKLDL 139 (159)
Q Consensus 67 ~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~---s~~---~~~~~~~~~~i~~~~~~~p-iilv~nK~Dl 139 (159)
.....+.+||+||++.|......++..+|++|+|+|+++.. +|. ... .++..+.. .++| ++|++||+|+
T Consensus 82 ~~~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~--~~~~~~~~--~~v~~iivviNK~Dl 157 (458)
T 1f60_A 82 TPKYQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTR--EHALLAFT--LGVRQLIVAVNKMDS 157 (458)
T ss_dssp CSSEEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHH--HHHHHHHH--TTCCEEEEEEECGGG
T ss_pred cCCceEEEEECCCcHHHHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHH--HHHHHHHH--cCCCeEEEEEEcccc
Confidence 33356999999999999888888999999999999999753 232 111 22222222 2465 9999999999
Q ss_pred cc
Q 044772 140 RK 141 (159)
Q Consensus 140 ~~ 141 (159)
.+
T Consensus 158 ~~ 159 (458)
T 1f60_A 158 VK 159 (458)
T ss_dssp GT
T ss_pred cc
Confidence 74
No 180
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.60 E-value=1.6e-15 Score=107.77 Aligned_cols=115 Identities=13% Similarity=0.070 Sum_probs=69.9
Q ss_pred cceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeee-EEEEEECCeEEEEEEEeCCCccc----------ccccc
Q 044772 19 ATKFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNF-SANVMVDGRTVNLGLWDTAGQED----------YNRLR 87 (159)
Q Consensus 19 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~----------~~~~~ 87 (159)
.....+|+++|++|+|||||+++|.+..+...+.++.+... ...+..++ .+.+||++|... +....
T Consensus 23 ~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~---~~~l~Dt~G~~~~~~~~~~~~~~~~~~ 99 (210)
T 1pui_A 23 SDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVAD---GKRLVDLPGYGYAEVPEEMKRKWQRAL 99 (210)
T ss_dssp CSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEET---TEEEEECCCCC------CCHHHHHHHH
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecC---CEEEEECcCCcccccCHHHHHHHHHHH
Confidence 34567999999999999999999998775444445544433 22333333 378999999742 22222
Q ss_pred cccc---cCCcEEEEEEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCccccc
Q 044772 88 PLSY---RGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRK 141 (159)
Q Consensus 88 ~~~~---~~~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~ 141 (159)
..++ ..++++++++|+.++.++.......|+.. .+.|+++++||+|+..
T Consensus 100 ~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~-----~~~~~~~v~nK~D~~s 151 (210)
T 1pui_A 100 GEYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVD-----SNIAVLVLLTKADKLA 151 (210)
T ss_dssp HHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHH-----TTCCEEEEEECGGGSC
T ss_pred HHHHHhhhcccEEEEEEECCCCCchhHHHHHHHHHH-----cCCCeEEEEecccCCC
Confidence 2333 57889999999987655533211134432 3689999999999864
No 181
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=99.59 E-value=6.3e-15 Score=122.07 Aligned_cols=116 Identities=17% Similarity=0.125 Sum_probs=82.6
Q ss_pred cceeeEEEEEcCCCCCHHHHHHHHhc--CCCCC-----------Cc-------ccceeeeeEEEEEECCeEEEEEEEeCC
Q 044772 19 ATKFIKCVTVRDGAVGKTCLLISYTG--NTFPT-----------DY-------VPTVFDNFSANVMVDGRTVNLGLWDTA 78 (159)
Q Consensus 19 ~~~~~ki~vvG~~~~GKSsli~~l~~--~~~~~-----------~~-------~~t~~~~~~~~~~~~~~~~~~~i~D~~ 78 (159)
..+..+|+++|++|+|||||+++|+. +.+.. ++ ..|.... ...+..++ +.+++||||
T Consensus 7 ~~~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~-~~~~~~~~--~~i~liDTP 83 (693)
T 2xex_A 7 LEKTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSA-ATTAAWEG--HRVNIIDTP 83 (693)
T ss_dssp STTEEEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCS-EEEEEETT--EEEEEECCC
T ss_pred cccceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeee-eEEEEECC--eeEEEEECc
Confidence 34678999999999999999999984 22211 00 0011111 11223333 569999999
Q ss_pred CcccccccccccccCCcEEEEEEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCcccccC
Q 044772 79 GQEDYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKD 142 (159)
Q Consensus 79 g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~ 142 (159)
|+..|...+..+++.+|++|+|+|+++..++.... .|.. +.. .++|+++|+||+|+...
T Consensus 84 G~~df~~~~~~~l~~aD~~llVvDa~~g~~~~~~~--~~~~-~~~--~~~p~ilviNK~Dl~~~ 142 (693)
T 2xex_A 84 GHVDFTVEVERSLRVLDGAVTVLDAQSGVEPQTET--VWRQ-ATT--YGVPRIVFVNKMDKLGA 142 (693)
T ss_dssp CCSSCCHHHHHHHHHCSEEEEEEETTTBSCHHHHH--HHHH-HHH--TTCCEEEEEECTTSTTC
T ss_pred CCcchHHHHHHHHHHCCEEEEEECCCCCCcHHHHH--HHHH-HHH--cCCCEEEEEECCCcccc
Confidence 99999888888999999999999999877766654 4433 333 36899999999999754
No 182
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=99.59 E-value=8.3e-16 Score=118.93 Aligned_cols=104 Identities=10% Similarity=-0.011 Sum_probs=72.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEEEEeC
Q 044772 24 KCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSL 103 (159)
Q Consensus 24 ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~ 103 (159)
+|+++|++++|||||+++|+ ....|....+. .+......+.+||+||+++|.......+..+|++|+|+|
T Consensus 23 ~i~iiG~~d~GKSTL~~~L~------~~giTi~~~~~---~~~~~~~~i~iiDtPGh~~f~~~~~~~~~~aD~ailVvd- 92 (370)
T 2elf_A 23 NVAIIGTEKSGRTSLAANLG------KKGTSSDITMY---NNDKEGRNMVFVDAHSYPKTLKSLITALNISDIAVLCIP- 92 (370)
T ss_dssp EEEEEESTTSSHHHHHHTTS------EEEEESSSEEE---EECSSSSEEEEEECTTTTTCHHHHHHHHHTCSEEEEEEC-
T ss_pred EEEEECCCCCCHHHHHHHHH------hCCEEEEeeEE---EEecCCeEEEEEECCChHHHHHHHHHHHHHCCEEEEEEc-
Confidence 99999999999999999998 11122222221 233233459999999999988777778899999999999
Q ss_pred CChhhHHhhhhhhHHHHHhhhCCCCCE-EEEee-CcccccCc
Q 044772 104 ISRPSYENISKKKWVPELRHYAPSVPI-VLVGT-KLDLRKDR 143 (159)
Q Consensus 104 ~~~~s~~~~~~~~~~~~i~~~~~~~pi-ilv~n-K~Dl~~~r 143 (159)
++ ..+.... .|+..+... ++|. ++++| |+|+ +.+
T Consensus 93 ~~-g~~~qt~--e~~~~~~~~--~i~~~ivvvNNK~Dl-~~~ 128 (370)
T 2elf_A 93 PQ-GLDAHTG--ECIIALDLL--GFKHGIIALTRSDST-HMH 128 (370)
T ss_dssp TT-CCCHHHH--HHHHHHHHT--TCCEEEEEECCGGGS-CHH
T ss_pred CC-CCcHHHH--HHHHHHHHc--CCCeEEEEEEeccCC-CHH
Confidence 53 3333333 454444332 4676 88899 9999 543
No 183
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=99.58 E-value=8.9e-15 Score=121.33 Aligned_cols=118 Identities=14% Similarity=0.066 Sum_probs=82.5
Q ss_pred cceeeEEEEEcCCCCCHHHHHHHHhcC--CCCCC------------------cccceeeeeEEEEEEC-----CeEEEEE
Q 044772 19 ATKFIKCVTVRDGAVGKTCLLISYTGN--TFPTD------------------YVPTVFDNFSANVMVD-----GRTVNLG 73 (159)
Q Consensus 19 ~~~~~ki~vvG~~~~GKSsli~~l~~~--~~~~~------------------~~~t~~~~~~~~~~~~-----~~~~~~~ 73 (159)
..+..+|+|+|+.++|||||+++|+.. .+... ...|..... ..+..+ +..+.++
T Consensus 7 ~~~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~-~~~~~~~~~~~~~~~~i~ 85 (704)
T 2rdo_7 7 IARYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAA-TTAFWSGMAKQYEPHRIN 85 (704)
T ss_pred cccccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeece-EEEEECCccccCCceeEE
Confidence 346789999999999999999999743 12110 001111111 122222 2347899
Q ss_pred EEeCCCcccccccccccccCCcEEEEEEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCcccccC
Q 044772 74 LWDTAGQEDYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKD 142 (159)
Q Consensus 74 i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~ 142 (159)
||||||+..|...+..++..+|++|+|+|+++...+.... .|.. +.. .++|+++++||+|+...
T Consensus 86 liDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~qt~~--~~~~-~~~--~~ip~ilviNKiD~~~~ 149 (704)
T 2rdo_7 86 IIDTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSET--VWRQ-ANK--YKVPRIAFVNKMDRMGA 149 (704)
T ss_pred EEeCCCccchHHHHHHHHHHCCEEEEEEeCCCCCcHHHHH--HHHH-HHH--cCCCEEEEEeCCCcccc
Confidence 9999999999888889999999999999999876555443 4432 222 37899999999998754
No 184
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=99.56 E-value=8.3e-16 Score=125.31 Aligned_cols=121 Identities=16% Similarity=0.096 Sum_probs=63.4
Q ss_pred cceeeEEEEEcCCCCCHHHHHHHHhcCC--CCCC-------------------------ccc--ceeeee-EEEEEECCe
Q 044772 19 ATKFIKCVTVRDGAVGKTCLLISYTGNT--FPTD-------------------------YVP--TVFDNF-SANVMVDGR 68 (159)
Q Consensus 19 ~~~~~ki~vvG~~~~GKSsli~~l~~~~--~~~~-------------------------~~~--t~~~~~-~~~~~~~~~ 68 (159)
....++|+++|++++|||||+++|+... +... ... ..+.+. .....+...
T Consensus 174 ~k~~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~~~ 253 (592)
T 3mca_A 174 PKPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFESD 253 (592)
T ss_dssp CCCEEEEEEECCSSSTHHHHHHHHHHHHHCC-------------------------------------------------
T ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEEeC
Confidence 3467899999999999999999996421 1000 000 000000 001112223
Q ss_pred EEEEEEEeCCCcccccccccccccCCcEEEEEEeCCChhhHHhh--hh--hhHHHHHhhhCCCCC-EEEEeeCccccc
Q 044772 69 TVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISRPSYENI--SK--KKWVPELRHYAPSVP-IVLVGTKLDLRK 141 (159)
Q Consensus 69 ~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~--~~--~~~~~~i~~~~~~~p-iilv~nK~Dl~~ 141 (159)
...+.||||||++.|......++..+|++|+|+|+++...+..+ .. ...+..+.. .++| ++||+||+|+.+
T Consensus 254 ~~~i~iiDTPGh~~f~~~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~~--lgip~iIvviNKiDl~~ 329 (592)
T 3mca_A 254 KKIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRA--LGISEIVVSVNKLDLMS 329 (592)
T ss_dssp -----CCEEESSSEEEEECCC-------CCSEEEEEECCSSTTSCSCSSHHHHHHHHHH--SSCCCEEEEEECGGGGT
T ss_pred CeEEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCccccccccchHHHHHHHHHHH--cCCCeEEEEEecccccc
Confidence 35689999999999998888899999999999999864321111 10 011111111 2455 999999999975
No 185
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=99.55 E-value=1.8e-14 Score=112.20 Aligned_cols=73 Identities=18% Similarity=0.279 Sum_probs=66.5
Q ss_pred EEEEEEeCCCcccccccccccccCCcEEEEEEeCCC----------hhhHHhhhhhhHHHHHhhh--CCCCCEEEEeeCc
Q 044772 70 VNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLIS----------RPSYENISKKKWVPELRHY--APSVPIVLVGTKL 137 (159)
Q Consensus 70 ~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~----------~~s~~~~~~~~~~~~i~~~--~~~~piilv~nK~ 137 (159)
+.+++||++|++.+...|..||++++++|||||+++ ..+|.++. .|+..+... ..++|++|||||+
T Consensus 217 v~l~iwDtaGQe~~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~--~~~~~i~~~~~~~~~piiLvgNK~ 294 (402)
T 1azs_C 217 VNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEAL--NLFKSIWNNRWLRTISVILFLNKQ 294 (402)
T ss_dssp EEEEEEEECCSGGGGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHH--HHHHHHHTCTTCSSCCEEEEEECH
T ss_pred ccceecccchhhhhhhhhHhhccCCCEEEEEEECcccccccccccccchHHHHH--HHHHHHHhcccCCCCeEEEEEECh
Confidence 789999999999999999999999999999999999 88999888 899888765 3689999999999
Q ss_pred ccccCcc
Q 044772 138 DLRKDRQ 144 (159)
Q Consensus 138 Dl~~~r~ 144 (159)
|+.+.+.
T Consensus 295 DL~~~ki 301 (402)
T 1azs_C 295 DLLAEKV 301 (402)
T ss_dssp HHHHHHH
T ss_pred hhhhhhh
Confidence 9987665
No 186
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=99.55 E-value=2.7e-14 Score=111.36 Aligned_cols=84 Identities=19% Similarity=0.164 Sum_probs=48.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCC-CCccc-ceeeeeEE-EE-------------------EECC-eEEEEEEEeCCC
Q 044772 23 IKCVTVRDGAVGKTCLLISYTGNTFP-TDYVP-TVFDNFSA-NV-------------------MVDG-RTVNLGLWDTAG 79 (159)
Q Consensus 23 ~ki~vvG~~~~GKSsli~~l~~~~~~-~~~~~-t~~~~~~~-~~-------------------~~~~-~~~~~~i~D~~g 79 (159)
+||+++|.+|||||||+|+|.+.... .++.. |....... .+ .+++ ..+.+.+||+||
T Consensus 1 ~kI~ivG~pnvGKSTL~n~L~~~~~~~~~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~lvDtpG 80 (397)
T 1wxq_A 1 MEIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAG 80 (397)
T ss_dssp CEEEEEECTTSSHHHHHHHHHC--------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC-
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCcccCCceEEEeeccCCchHHhhhhcccccccccCCcceEEEEEEECCC
Confidence 58999999999999999999987732 22222 22222211 11 1232 247799999999
Q ss_pred ccc----ccccc---cccccCCcEEEEEEeCCCh
Q 044772 80 QED----YNRLR---PLSYRGADVFILAFSLISR 106 (159)
Q Consensus 80 ~~~----~~~~~---~~~~~~~~~~i~v~d~~~~ 106 (159)
... ...+. ..+++.+|++++|+|+.+.
T Consensus 81 ~~~~a~~~~~l~~~~l~~i~~aD~il~VvD~~~~ 114 (397)
T 1wxq_A 81 LVPGAHEGRGLGNKFLDDLRMASALIHVVDATGK 114 (397)
T ss_dssp --------------CCCSSTTCSEEEEEEETTCC
T ss_pred cccchhhhhhHHHHHHHHHhcCCEEEEEEecccc
Confidence 753 22222 3457899999999999874
No 187
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=99.55 E-value=6.5e-15 Score=126.22 Aligned_cols=119 Identities=20% Similarity=0.144 Sum_probs=79.5
Q ss_pred cceeeEEEEEcCCCCCHHHHHHHHhcCC-------CCC-----C--cccceeeee-EEEEEECCeEEEEEEEeCCCcccc
Q 044772 19 ATKFIKCVTVRDGAVGKTCLLISYTGNT-------FPT-----D--YVPTVFDNF-SANVMVDGRTVNLGLWDTAGQEDY 83 (159)
Q Consensus 19 ~~~~~ki~vvG~~~~GKSsli~~l~~~~-------~~~-----~--~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~ 83 (159)
....++|+++|+.++|||||+++|.+.. +.. . ...+.+.+. .....++.....+.+||+||++.|
T Consensus 293 ~k~~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~~~~kI~IIDTPGHedF 372 (1289)
T 3avx_A 293 TKPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHADY 372 (1289)
T ss_dssp CCCEEEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEECSSCEEEEEECCCHHHH
T ss_pred cCCeeEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcCCCEEEEEEECCChHHH
Confidence 3456899999999999999999998631 100 0 000111111 011223333456899999999999
Q ss_pred cccccccccCCcEEEEEEeCCChhhHHhhhhhhHHHHHhhhCCCCC-EEEEeeCcccccC
Q 044772 84 NRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVP-IVLVGTKLDLRKD 142 (159)
Q Consensus 84 ~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~p-iilv~nK~Dl~~~ 142 (159)
......++..+|++|+|+|+++....+.. .|+..+.. .++| ++|++||+|+.+.
T Consensus 373 ~~~mi~gas~AD~aILVVDAtdGv~~QTr---EhL~ll~~--lgIP~IIVVINKiDLv~d 427 (1289)
T 3avx_A 373 VKNMITGAAQMDGAILVVAATDGPMPQTR---EHILLGRQ--VGVPYIIVFLNKCDMVDD 427 (1289)
T ss_dssp HHHHHHTSCCCSEEEEEEETTTCSCTTHH---HHHHHHHH--HTCSCEEEEEECCTTCCC
T ss_pred HHHHHHHHhhCCEEEEEEcCCccCcHHHH---HHHHHHHH--cCCCeEEEEEeecccccc
Confidence 88888889999999999999986443322 44444433 2578 8999999999753
No 188
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=99.53 E-value=2.6e-16 Score=118.63 Aligned_cols=100 Identities=17% Similarity=0.099 Sum_probs=83.8
Q ss_pred HHHHHHhcCCCC-CCcccceeeeeEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEEEEeCCChh-hHHhhhh
Q 044772 37 CLLISYTGNTFP-TDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISRP-SYENISK 114 (159)
Q Consensus 37 sli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~-s~~~~~~ 114 (159)
+|+.+++.+.|. ..+.||.++.+...+..++ .+++||+ ++++..+++.+++++|++|+|||++++. +|..+.
T Consensus 32 sl~~~~~~~~f~~~~~~pTiGd~~~~~~~~~~---~~~iwD~--qer~~~l~~~~~~~ad~vilV~D~~~~~~s~~~l~- 105 (301)
T 1u0l_A 32 ERILCKLRGKFRLQNLKIYVGDRVEYTPDETG---SGVIENV--LHRKNLLTKPHVANVDQVILVVTVKMPETSTYIID- 105 (301)
T ss_dssp CEEEEEECGGGTTTTCCCCTTCEEEEECCCSS---SEEEEEE--CCCSCEETTTTEESCCEEEEEECSSTTCCCHHHHH-
T ss_pred cEEEEEEcccccccCCCCCCccEEEEEEcCCC---eEEEEEE--ccccceeeccccccCCEEEEEEeCCCCCCCHHHHH-
Confidence 688889999998 8899999977664432233 6899999 8999999999999999999999999987 688777
Q ss_pred hhHHHHHhhhCCCCCEEEEeeCcccccCccc
Q 044772 115 KKWVPELRHYAPSVPIVLVGTKLDLRKDRQF 145 (159)
Q Consensus 115 ~~~~~~i~~~~~~~piilv~nK~Dl~~~r~v 145 (159)
.|+..+.. .++|++||+||+||.+.+.+
T Consensus 106 -~~l~~~~~--~~~piilv~NK~DL~~~~~v 133 (301)
T 1u0l_A 106 -KFLVLAEK--NELETVMVINKMDLYDEDDL 133 (301)
T ss_dssp -HHHHHHHH--TTCEEEEEECCGGGCCHHHH
T ss_pred -HHHHHHHH--CCCCEEEEEeHHHcCCchhH
Confidence 89987765 47999999999999876654
No 189
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=99.53 E-value=1.9e-14 Score=118.70 Aligned_cols=116 Identities=18% Similarity=0.051 Sum_probs=80.7
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccc----------------eeeee-EEEEEECCeEEEEEEEeCCCccc
Q 044772 20 TKFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPT----------------VFDNF-SANVMVDGRTVNLGLWDTAGQED 82 (159)
Q Consensus 20 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t----------------~~~~~-~~~~~~~~~~~~~~i~D~~g~~~ 82 (159)
....+|+++|++|+|||||+++|++.........+ .+..+ .....+....+.+++||++|++.
T Consensus 7 ~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nliDTpG~~~ 86 (665)
T 2dy1_A 7 AMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGYGD 86 (665)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECCCSGG
T ss_pred CCCcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEEeCCCccc
Confidence 45679999999999999999999844322111110 01111 22222332346799999999999
Q ss_pred ccccccccccCCcEEEEEEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCcccc
Q 044772 83 YNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLR 140 (159)
Q Consensus 83 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~ 140 (159)
|......++..+|++++|+|..+....... .++..+.. .++|+++++||+|+.
T Consensus 87 f~~~~~~~l~~ad~~ilVvD~~~g~~~qt~---~~~~~~~~--~~ip~ilv~NKiD~~ 139 (665)
T 2dy1_A 87 FVGEIRGALEAADAALVAVSAEAGVQVGTE---RAWTVAER--LGLPRMVVVTKLDKG 139 (665)
T ss_dssp GHHHHHHHHHHCSEEEEEEETTTCSCHHHH---HHHHHHHH--TTCCEEEEEECGGGC
T ss_pred hHHHHHHHHhhcCcEEEEEcCCcccchhHH---HHHHHHHH--ccCCEEEEecCCchh
Confidence 988888899999999999998765443333 34444433 368999999999986
No 190
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.52 E-value=3.6e-14 Score=111.20 Aligned_cols=125 Identities=16% Similarity=0.140 Sum_probs=73.5
Q ss_pred CcceeeEEEEEcCCCCCHHHHHHHHhcCCCC-CCc-------ccceeeee-EEEEEECCeEEEEEEEeCCCcccccc---
Q 044772 18 TATKFIKCVTVRDGAVGKTCLLISYTGNTFP-TDY-------VPTVFDNF-SANVMVDGRTVNLGLWDTAGQEDYNR--- 85 (159)
Q Consensus 18 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~-~~~-------~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~--- 85 (159)
.....++|+|+|++|+|||||++.|++..+. ..+ .++..... .......+....+.+||++|...+..
T Consensus 27 l~~vsf~I~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~~~~ 106 (418)
T 2qag_C 27 KRGFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSN 106 (418)
T ss_dssp C-CCCEEEEEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC------CEEEEEEECC----------
T ss_pred ecCCCEEEEEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEecCCcccceeeeechhhhhhccchh
Confidence 4456678999999999999999999987763 211 11211111 11112233445799999999754311
Q ss_pred ----------------------cccccccCCcEEEEEEeCCCh-hhHHhhhhhhHHHHHhhhCCCCCEEEEeeCcccccC
Q 044772 86 ----------------------LRPLSYRGADVFILAFSLISR-PSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKD 142 (159)
Q Consensus 86 ----------------------~~~~~~~~~~~~i~v~d~~~~-~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~ 142 (159)
+...++.++++.+++|..... .++..... .|+..+. .++|+|+|+||+|+...
T Consensus 107 ~~~~i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~-~~lk~L~---~~v~iIlVinK~Dll~~ 182 (418)
T 2qag_C 107 CWQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDI-EFMKRLH---EKVNIIPLIAKADTLTP 182 (418)
T ss_dssp -CHHHHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHH-HHHHHHT---TTSEEEEEEESTTSSCH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHH-HHHHHHh---ccCcEEEEEEcccCccH
Confidence 123456677766666666543 35666554 6777775 37899999999998765
Q ss_pred cccc
Q 044772 143 RQFH 146 (159)
Q Consensus 143 r~v~ 146 (159)
+++.
T Consensus 183 ~ev~ 186 (418)
T 2qag_C 183 EECQ 186 (418)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5554
No 191
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=99.47 E-value=1e-13 Score=106.50 Aligned_cols=120 Identities=23% Similarity=0.248 Sum_probs=70.8
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCc------cccee--------------------eee--------------
Q 044772 20 TKFIKCVTVRDGAVGKTCLLISYTGNTFPTDY------VPTVF--------------------DNF-------------- 59 (159)
Q Consensus 20 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~------~~t~~--------------------~~~-------------- 59 (159)
....+|+|+|.+|||||||+++|++.++.+.. .|+.- ..+
T Consensus 29 ~~~~~I~vvG~~~~GKSSLln~L~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~tt~~~v~~~i~~~~~~i 108 (353)
T 2x2e_A 29 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNATTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV 108 (353)
T ss_dssp CCCCEEEEECBTTSSHHHHHHTTTTSCCSCCCSSSCCCSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHhCCCcCCCCCCcccccceEEEEEcCCccceeeeecCCcccCCHHHHHHHHHHHHHHh
Confidence 45579999999999999999999998874221 12200 000
Q ss_pred ----------EEEEEEC-CeEEEEEEEeCCCcc-------------cccccccccccCCcEEEE-EEeCCChhhHHhhhh
Q 044772 60 ----------SANVMVD-GRTVNLGLWDTAGQE-------------DYNRLRPLSYRGADVFIL-AFSLISRPSYENISK 114 (159)
Q Consensus 60 ----------~~~~~~~-~~~~~~~i~D~~g~~-------------~~~~~~~~~~~~~~~~i~-v~d~~~~~s~~~~~~ 114 (159)
...+.+. .....+.+|||||.. .+..+...|+...+.+|+ +.+.+. .+.....
T Consensus 109 ~g~~~gi~~~~~~~~i~~~~~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~--~~~~~~~ 186 (353)
T 2x2e_A 109 TGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANS--DLANSDA 186 (353)
T ss_dssp HTTTTCCCCCCEEEEEEETTCCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTS--CGGGCHH
T ss_pred cccCCCcccCceEEEEecCCCCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCC--ccchhHH
Confidence 0001111 112469999999963 233455567766665555 455543 2332211
Q ss_pred hhHHHHHhhhCCCCCEEEEeeCcccccCc
Q 044772 115 KKWVPELRHYAPSVPIVLVGTKLDLRKDR 143 (159)
Q Consensus 115 ~~~~~~i~~~~~~~piilv~nK~Dl~~~r 143 (159)
..++..+.. .+.|+++|+||+|+.+.+
T Consensus 187 ~~i~~~~~~--~~~~~i~V~NK~Dl~~~~ 213 (353)
T 2x2e_A 187 LKVAKEVDP--QGQRTIGVITKLDLMDEG 213 (353)
T ss_dssp HHHHHHHCT--TCTTEEEEEECGGGSCTT
T ss_pred HHHHHHhCc--CCCceEEEeccccccCcc
Confidence 023333332 478999999999997543
No 192
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.42 E-value=5.3e-14 Score=106.00 Aligned_cols=122 Identities=16% Similarity=0.159 Sum_probs=61.8
Q ss_pred CcceeeEEEEEcCCCCCHHHHHHHHhcC-CCCCCc--------ccceeeee-EEEEEECCeEEEEEEEeCCCc-------
Q 044772 18 TATKFIKCVTVRDGAVGKTCLLISYTGN-TFPTDY--------VPTVFDNF-SANVMVDGRTVNLGLWDTAGQ------- 80 (159)
Q Consensus 18 ~~~~~~ki~vvG~~~~GKSsli~~l~~~-~~~~~~--------~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~------- 80 (159)
.....++|+++|++|+|||||+++|.+. .+...+ .++..... ......++....+.+||++|.
T Consensus 14 l~~~~~~I~lvG~nG~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~~~~~~~~ 93 (301)
T 2qnr_A 14 KKGFEFTLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCR 93 (301)
T ss_dssp ----CEEEEEEEETTSSHHHHHHHHHC------------------------CEEEEC---CCEEEEEEEEC---------
T ss_pred EcCCCEEEEEECCCCCCHHHHHHHHhCCCccCCCCcccCCcccCCcceEeeEEEEecCCCcccCcchhhhhhhhhhcCcH
Confidence 3456689999999999999999998875 443332 11221111 112222344578999999997
Q ss_pred cccccccc-------cccc-------------CCcEEEEEEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCcccc
Q 044772 81 EDYNRLRP-------LSYR-------------GADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLR 140 (159)
Q Consensus 81 ~~~~~~~~-------~~~~-------------~~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~ 140 (159)
+.+..... .++. .+++++++.+.+ ..++..+.. .++..+ ..+.|+++|+||.|+.
T Consensus 94 e~~~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt-~~~Ld~~~~-~~l~~l---~~~~~iilV~~K~Dl~ 168 (301)
T 2qnr_A 94 DCFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPF-GHGLKPLDV-AFMKAI---HNKVNIVPVIAKADTL 168 (301)
T ss_dssp --CTTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSS-SSSCCHHHH-HHHHHH---TTTSCEEEEECCGGGS
T ss_pred HHHHHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCc-ccCCCHHHH-HHHHHH---HhcCCEEEEEEeCCCC
Confidence 44443332 3322 223344443322 224555442 344433 3568999999999997
Q ss_pred cCcc
Q 044772 141 KDRQ 144 (159)
Q Consensus 141 ~~r~ 144 (159)
..++
T Consensus 169 ~~~e 172 (301)
T 2qnr_A 169 TLKE 172 (301)
T ss_dssp CHHH
T ss_pred CHHH
Confidence 6544
No 193
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=99.38 E-value=1.2e-12 Score=100.72 Aligned_cols=83 Identities=22% Similarity=0.156 Sum_probs=55.7
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCC-CCccc-ceeeeeEEEEEECCe---------------EEEEEEEeCCCccccc
Q 044772 22 FIKCVTVRDGAVGKTCLLISYTGNTFP-TDYVP-TVFDNFSANVMVDGR---------------TVNLGLWDTAGQEDYN 84 (159)
Q Consensus 22 ~~ki~vvG~~~~GKSsli~~l~~~~~~-~~~~~-t~~~~~~~~~~~~~~---------------~~~~~i~D~~g~~~~~ 84 (159)
.++|+++|.+|||||||+++|.+..+. .++.. |.+.... .+.+++. ...+++||+||...+.
T Consensus 2 ~~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g-~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~a 80 (363)
T 1jal_A 2 GFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTG-VVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGA 80 (363)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSS-EEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTH
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEE-EEecCCcccceeeeeecccceeeeEEEEEECCCCcccc
Confidence 368999999999999999999987743 22222 3333222 2333432 1469999999987643
Q ss_pred ----ccc---cccccCCcEEEEEEeCCC
Q 044772 85 ----RLR---PLSYRGADVFILAFSLIS 105 (159)
Q Consensus 85 ----~~~---~~~~~~~~~~i~v~d~~~ 105 (159)
.+. ..+++++|++++|+|+.+
T Consensus 81 ~~~~gl~~~fl~~ir~ad~il~VvD~~~ 108 (363)
T 1jal_A 81 SKGEGLGNKFLANIRETDAIGHVVRCFE 108 (363)
T ss_dssp HHHGGGTCCHHHHHHTCSEEEEEEECSC
T ss_pred cccchHHHHHHHHHHhcCeEEEEEecCC
Confidence 222 234789999999999986
No 194
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=99.37 E-value=9.9e-13 Score=106.33 Aligned_cols=119 Identities=13% Similarity=0.051 Sum_probs=81.7
Q ss_pred cceeeEEEEEcCCCCCHHHHHHHHhcCCCC-----------------CCcccc-e--e-eeeEEEEEECCeEEEEEEEeC
Q 044772 19 ATKFIKCVTVRDGAVGKTCLLISYTGNTFP-----------------TDYVPT-V--F-DNFSANVMVDGRTVNLGLWDT 77 (159)
Q Consensus 19 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~-----------------~~~~~t-~--~-~~~~~~~~~~~~~~~~~i~D~ 77 (159)
..+..+|.|+|+.++|||||..+|+...-. .++.+. . + ........+....+.++|.||
T Consensus 28 ~~r~RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDT 107 (548)
T 3vqt_A 28 AARRRTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPYRDRVVNLLDT 107 (548)
T ss_dssp HHTEEEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEEETTEEEEEECC
T ss_pred ccccceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEEECCEEEEEEeC
Confidence 457789999999999999999999622110 000000 0 0 001111222223367999999
Q ss_pred CCcccccccccccccCCcEEEEEEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCcccccC
Q 044772 78 AGQEDYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKD 142 (159)
Q Consensus 78 ~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~ 142 (159)
||+.+|.......++-+|++|+|+|+...-..+... .|-.... .++|++++.||+|....
T Consensus 108 PGHvDF~~Ev~raL~~~DgAvlVvda~~GV~~qT~~--v~~~a~~---~~lp~i~fINK~Dr~~a 167 (548)
T 3vqt_A 108 PGHQDFSEDTYRVLTAVDSALVVIDAAKGVEAQTRK--LMDVCRM---RATPVMTFVNKMDREAL 167 (548)
T ss_dssp CCGGGCSHHHHHHHHSCSEEEEEEETTTBSCHHHHH--HHHHHHH---TTCCEEEEEECTTSCCC
T ss_pred CCcHHHHHHHHHHHHhcCceEEEeecCCCcccccHH--HHHHHHH---hCCceEEEEecccchhc
Confidence 999999999999999999999999998765555444 5544333 37999999999998653
No 195
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.34 E-value=3.8e-12 Score=99.69 Aligned_cols=115 Identities=18% Similarity=0.143 Sum_probs=75.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCC-CCcccceeeeeEEEEEECCeEEEEEEEeCCCcccc----ccccccc---ccCCc
Q 044772 24 KCVTVRDGAVGKTCLLISYTGNTFP-TDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDY----NRLRPLS---YRGAD 95 (159)
Q Consensus 24 ki~vvG~~~~GKSsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~----~~~~~~~---~~~~~ 95 (159)
.|.|+|++|+|||||+++|.+.... ..+..+.-......+..++ ...+.+||++|.... ..+...+ +..++
T Consensus 159 ~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~ftTl~p~~G~V~~~~-~~~~~l~DtpGli~~a~~~~~L~~~fl~~~era~ 237 (416)
T 1udx_A 159 DVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSE-EERFTLADIPGIIEGASEGKGLGLEFLRHIARTR 237 (416)
T ss_dssp SEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEECSS-SCEEEEEECCCCCCCGGGSCCSCHHHHHHHTSSS
T ss_pred EEEEECCCCCcHHHHHHHHHcCCccccCcccceecceeeEEEecC-cceEEEEeccccccchhhhhhhhHHHHHHHHHHH
Confidence 4899999999999999999876421 1222221111122333343 235889999996321 1122222 45799
Q ss_pred EEEEEEeCCChhhHHhhhhhhHHHHHhhhC---CCCCEEEEeeCcccccC
Q 044772 96 VFILAFSLISRPSYENISKKKWVPELRHYA---PSVPIVLVGTKLDLRKD 142 (159)
Q Consensus 96 ~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~---~~~piilv~nK~Dl~~~ 142 (159)
.++.++|++ ...+..+. .|...+..+. ...|.+||+||+|+...
T Consensus 238 ~lL~vvDls-~~~~~~ls--~g~~el~~la~aL~~~P~ILVlNKlDl~~~ 284 (416)
T 1udx_A 238 VLLYVLDAA-DEPLKTLE--TLRKEVGAYDPALLRRPSLVALNKVDLLEE 284 (416)
T ss_dssp EEEEEEETT-SCHHHHHH--HHHHHHHHHCHHHHHSCEEEEEECCTTSCH
T ss_pred hhhEEeCCc-cCCHHHHH--HHHHHHHHHhHHhhcCCEEEEEECCChhhH
Confidence 999999998 56677776 6666666554 26799999999998753
No 196
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=99.31 E-value=4.2e-12 Score=98.19 Aligned_cols=118 Identities=17% Similarity=0.130 Sum_probs=77.6
Q ss_pred CcceeeEEEEEcCCCCCHHHHHHHHhcCCCC-CCcccceeeeeEEEEEECCeEEEEEEEeCCCcccccc-------cccc
Q 044772 18 TATKFIKCVTVRDGAVGKTCLLISYTGNTFP-TDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNR-------LRPL 89 (159)
Q Consensus 18 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~-------~~~~ 89 (159)
......+|.+||.||||||||+|+|.+.+.. .+|..++-+.....+.+++. ++++.|+||--.-.. ....
T Consensus 68 ~k~g~a~V~ivG~PNvGKSTL~n~Lt~~~~~v~~~pftT~~~~~g~~~~~~~--~i~l~D~pGl~~~a~~~~~~g~~~l~ 145 (376)
T 4a9a_A 68 ARTGVASVGFVGFPSVGKSTLLSKLTGTESEAAEYEFTTLVTVPGVIRYKGA--KIQMLDLPGIIDGAKDGRGRGKQVIA 145 (376)
T ss_dssp CBCSSEEEEEECCCCHHHHHHHHHHHSBCCCGGGTCSSCCCEEEEEEEETTE--EEEEEECGGGCCC-----CHHHHHHH
T ss_pred eecCCCeEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeeeeeEEEEeCCc--EEEEEeCCCccCCchhhhHHHHHHHH
Confidence 3455679999999999999999999976643 34444444444445666775 488999999532111 1123
Q ss_pred cccCCcEEEEEEeCCChhhHHhhhhhhHHHHHhhh---CCCCCEEEEeeCccccc
Q 044772 90 SYRGADVFILAFSLISRPSYENISKKKWVPELRHY---APSVPIVLVGTKLDLRK 141 (159)
Q Consensus 90 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~---~~~~piilv~nK~Dl~~ 141 (159)
.++.+|++++|+|+.++..-.. ....++... ..+.|.+++.||.|...
T Consensus 146 ~i~~ad~il~vvD~~~p~~~~~----~i~~EL~~~~~~l~~k~~~i~~nK~d~~g 196 (376)
T 4a9a_A 146 VARTCNLLFIILDVNKPLHHKQ----IIEKELEGVGIRLNKTPPDILIKKKEKGG 196 (376)
T ss_dssp HHHHCSEEEEEEETTSHHHHHH----HHHHHHHHTTEEETCCCCCEEEEECSSSC
T ss_pred HHHhcCccccccccCccHHHHH----HHHHHHHHhhHhhccCChhhhhhHhhhhh
Confidence 4578999999999998743221 122222222 23678889999999753
No 197
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=99.23 E-value=9.9e-15 Score=104.97 Aligned_cols=37 Identities=14% Similarity=0.030 Sum_probs=29.4
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceee
Q 044772 21 KFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFD 57 (159)
Q Consensus 21 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~ 57 (159)
+.++|+++|.+|||||||+++|+...+...+.++.+.
T Consensus 37 ~~~~i~ivG~~gvGKTtl~~~l~~~~~~~~~~~~i~~ 73 (226)
T 2hf9_A 37 GVVAFDFMGAIGSGKTLLIEKLIDNLKDKYKIACIAG 73 (226)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHHHTTTCCEEEEEE
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEEC
Confidence 4689999999999999999999977665544455443
No 198
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=99.23 E-value=3.3e-11 Score=100.17 Aligned_cols=117 Identities=16% Similarity=0.113 Sum_probs=79.9
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCC--------CCCC--cccceeee-------eE--EEEEEC-----CeEEEEEEE
Q 044772 20 TKFIKCVTVRDGAVGKTCLLISYTGNT--------FPTD--YVPTVFDN-------FS--ANVMVD-----GRTVNLGLW 75 (159)
Q Consensus 20 ~~~~ki~vvG~~~~GKSsli~~l~~~~--------~~~~--~~~t~~~~-------~~--~~~~~~-----~~~~~~~i~ 75 (159)
.+..+|+|+|+-++|||||..+|+... .... +.-+...+ .+ ..+.+. ...+.+++.
T Consensus 11 ~~IRNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~~~~iNlI 90 (709)
T 4fn5_A 11 NRYRNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSRGQYDNYRVNVI 90 (709)
T ss_dssp GGEEEEEEECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCTTSCSCCEEEEEE
T ss_pred HHCeEEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEeccCcCCCCCEEEEEE
Confidence 577899999999999999999987221 1110 11111111 01 122222 135789999
Q ss_pred eCCCcccccccccccccCCcEEEEEEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCccccc
Q 044772 76 DTAGQEDYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRK 141 (159)
Q Consensus 76 D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~ 141 (159)
||||+.+|.......++-+|++|+|+|+...-..+... .|-..... ++|.+++.||+|...
T Consensus 91 DTPGHvDF~~Ev~~aLr~~DgavlvVDaveGV~~qT~~--v~~~a~~~---~lp~i~~iNKiDr~~ 151 (709)
T 4fn5_A 91 DTPGHVDFTIEVERSLRVLDGAVVVFCGTSGVEPQSET--VWRQANKY---GVPRIVYVNKMDRQG 151 (709)
T ss_dssp CCCSCTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHH--HHHHHHHH---TCCEEEEEECSSSTT
T ss_pred eCCCCcccHHHHHHHHHHhCeEEEEEECCCCCchhHHH--HHHHHHHc---CCCeEEEEccccccC
Confidence 99999999999999999999999999998654444443 44444433 689999999999864
No 199
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=99.21 E-value=8.9e-12 Score=96.84 Aligned_cols=89 Identities=18% Similarity=0.094 Sum_probs=50.2
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccc--ceeeeeEEEEEECCe---------------EEEEEEEeCCCccc
Q 044772 20 TKFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVP--TVFDNFSANVMVDGR---------------TVNLGLWDTAGQED 82 (159)
Q Consensus 20 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~--t~~~~~~~~~~~~~~---------------~~~~~i~D~~g~~~ 82 (159)
....+|.++|.+|||||||+++|.+..+.....| |.... ...+.+++. ...+.+||++|...
T Consensus 20 ~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~-~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtpGl~~ 98 (396)
T 2ohf_A 20 GTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPN-ESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGLVK 98 (396)
T ss_dssp SSCCCEEEECCSSSSHHHHHHHHHC-------------CCS-EEEEECCCHHHHHHHHHHCCSEEECCEEEEEECCC---
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCce-eEEEEECCccceeeccccCcccccccccEEEECCCccc
Confidence 4567899999999999999999998765332222 22222 223333332 23589999999865
Q ss_pred ccc-------cccccccCCcEEEEEEeCCChhhH
Q 044772 83 YNR-------LRPLSYRGADVFILAFSLISRPSY 109 (159)
Q Consensus 83 ~~~-------~~~~~~~~~~~~i~v~d~~~~~s~ 109 (159)
... .+..+++++|++++|+|+.+.+++
T Consensus 99 ~as~~~glg~~~l~~ir~aD~Il~VvD~~~~~~i 132 (396)
T 2ohf_A 99 GAHNGQGLGNAFLSHISACDGIFHLTRAFEDDDI 132 (396)
T ss_dssp --------CCHHHHHHHTSSSEEEEEEC------
T ss_pred ccchhhHHHHHHHHHHHhcCeEEEEEecCCCcch
Confidence 443 345567899999999999865544
No 200
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=99.14 E-value=4.2e-12 Score=104.41 Aligned_cols=116 Identities=16% Similarity=0.037 Sum_probs=78.9
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhc--CCCCCC--------cccce------e-eeeEEEEEECCeEEEEEEEeCCCccccc
Q 044772 22 FIKCVTVRDGAVGKTCLLISYTG--NTFPTD--------YVPTV------F-DNFSANVMVDGRTVNLGLWDTAGQEDYN 84 (159)
Q Consensus 22 ~~ki~vvG~~~~GKSsli~~l~~--~~~~~~--------~~~t~------~-~~~~~~~~~~~~~~~~~i~D~~g~~~~~ 84 (159)
..||+|+|+.++|||||..+|+. +.+... +.... + ........+....+.+++.||||+.+|.
T Consensus 2 IRNi~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGH~DF~ 81 (638)
T 3j25_A 2 IINIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQWENTKVNIIDTPGHMDFL 81 (638)
T ss_dssp CCCCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCBCSSCBCCCEECCCSSSTH
T ss_pred eeEEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEEEECCEEEEEEECCCcHHHH
Confidence 46899999999999999999972 222110 00000 0 0011122233344669999999999999
Q ss_pred ccccccccCCcEEEEEEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCcccccC
Q 044772 85 RLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKD 142 (159)
Q Consensus 85 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~ 142 (159)
......++-+|++|+|+|+...-.-+... .|...... ++|.+++.||+|....
T Consensus 82 ~Ev~raL~~~DgavlVVDa~~GV~~qT~~--v~~~a~~~---~lp~i~~INKmDr~~a 134 (638)
T 3j25_A 82 AEVYRSLSVLDGAILLISAKDGVQAQTRI--LFHALRKM---GIPTIFFINKIDQNGI 134 (638)
T ss_dssp HHHHHHHTTCSEEECCEESSCTTCSHHHH--HHHHHHHH---TCSCEECCEECCSSSC
T ss_pred HHHHHHHHHhCEEEEEEeCCCCCcHHHHH--HHHHHHHc---CCCeEEEEeccccccC
Confidence 99999999999999999998654433332 44433332 6899999999998643
No 201
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=99.14 E-value=2.6e-11 Score=86.69 Aligned_cols=110 Identities=13% Similarity=0.046 Sum_probs=62.4
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeee-------------EEEEEECC------------------eE
Q 044772 21 KFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNF-------------SANVMVDG------------------RT 69 (159)
Q Consensus 21 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-------------~~~~~~~~------------------~~ 69 (159)
...+|+++|.+|||||||+++|................+ .....++. ..
T Consensus 29 ~~~~i~i~G~~g~GKTTl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (221)
T 2wsm_A 29 GTVAVNIMGAIGSGKTLLIERTIERIGNEVKIGAMLGDVVSKADYERVRRFGIKAEAISTGKECHLDAHMIYHRLKKFSD 108 (221)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHHHHTTTSCEEEEECSCCCHHHHHHHHTTTCEEEECCCTTCSSCCHHHHHTTGGGGTT
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEecCCCCchhHHHHHhCCCcEEEecCCceeecccHHHHHHHHhcCC
Confidence 457899999999999999999986532111111111000 00011111 12
Q ss_pred EEEEEEeCCCcccccccccccccCCcEEEEEEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCcccccC
Q 044772 70 VNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKD 142 (159)
Q Consensus 70 ~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~ 142 (159)
+.+.+||++|+..... .+....+.+++|+|+.+... ... .+...+ +.|+++|+||+|+...
T Consensus 109 ~d~iiidt~G~~~~~~---~~~~~~~~~i~vvd~~~~~~--~~~--~~~~~~-----~~~~iiv~NK~Dl~~~ 169 (221)
T 2wsm_A 109 CDLLLIENVGNLICPV---DFDLGENYRVVMVSVTEGDD--VVE--KHPEIF-----RVADLIVINKVALAEA 169 (221)
T ss_dssp CSEEEEEEEEBSSGGG---GCCCSCSEEEEEEEGGGCTT--HHH--HCHHHH-----HTCSEEEEECGGGHHH
T ss_pred CCEEEEeCCCCCCCCc---hhccccCcEEEEEeCCCcch--hhh--hhhhhh-----hcCCEEEEecccCCcc
Confidence 4578999888511111 11124678999999875431 111 112211 4789999999999654
No 202
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=99.13 E-value=1.8e-11 Score=94.08 Aligned_cols=61 Identities=20% Similarity=0.141 Sum_probs=41.9
Q ss_pred EEEEEEeCCCcccccccccccccCCcEEEEEEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCcccccC
Q 044772 70 VNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKD 142 (159)
Q Consensus 70 ~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~ 142 (159)
+.+.||||+|.... ....+..+|.+++|+|....+.+..+. .++ .+.|+++|+||+|+...
T Consensus 172 ~~~iiiDTpGi~~~---~~~~~~~aD~vl~V~d~~~~~~~~~l~--~~~-------~~~p~ivVlNK~Dl~~~ 232 (355)
T 3p32_A 172 FDVILIETVGVGQS---EVAVANMVDTFVLLTLARTGDQLQGIK--KGV-------LELADIVVVNKADGEHH 232 (355)
T ss_dssp CCEEEEEECSCSSH---HHHHHTTCSEEEEEEESSTTCTTTTCC--TTS-------GGGCSEEEEECCCGGGH
T ss_pred CCEEEEeCCCCCcH---HHHHHHhCCEEEEEECCCCCccHHHHH--HhH-------hhcCCEEEEECCCCcCh
Confidence 56899999994321 123347899999999987655544333 211 13589999999998743
No 203
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=99.08 E-value=7.3e-10 Score=92.30 Aligned_cols=118 Identities=18% Similarity=0.143 Sum_probs=71.6
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCC-ccccee-e----------------------------------------
Q 044772 20 TKFIKCVTVRDGAVGKTCLLISYTGNTFPTD-YVPTVF-D---------------------------------------- 57 (159)
Q Consensus 20 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~-~~~t~~-~---------------------------------------- 57 (159)
....+|+|+|..++|||||+|.|++..+.+. ...++. .
T Consensus 49 i~lp~I~vvG~~saGKSSllnaL~g~~~LP~g~g~~Tr~Pl~l~l~~~~~~~~~~l~~~~~~~~~~~~v~~~I~~~~~~~ 128 (772)
T 3zvr_A 49 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV 128 (772)
T ss_dssp GCCSEEEEEECTTTCHHHHHHHHHSSCCSCCSSSCSCSSCEEEEEEECSSCEEECSTTTTCCBCCHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhCCCccCcCCccccccceEEEeecCCcchhheeccCCcccCCHHHHHHHHHHHHhhh
Confidence 4556999999999999999999999876321 111100 0
Q ss_pred -----e-----eEEEEEECCeEEEEEEEeCCCccc-------------ccccccccc-cCCcEEEEEEeCCChhhHHhhh
Q 044772 58 -----N-----FSANVMVDGRTVNLGLWDTAGQED-------------YNRLRPLSY-RGADVFILAFSLISRPSYENIS 113 (159)
Q Consensus 58 -----~-----~~~~~~~~~~~~~~~i~D~~g~~~-------------~~~~~~~~~-~~~~~~i~v~d~~~~~s~~~~~ 113 (159)
. ....+...+ ...+.++||||... +..+...|+ ..++++++|+|++....-....
T Consensus 129 ~g~~~~is~~~i~l~I~~P~-~~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~~~~~~d~l 207 (772)
T 3zvr_A 129 TGTNKGISPVPINLRVYSPH-VLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDAL 207 (772)
T ss_dssp HCSTTCCCSCCEEEEEEETT-CCSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTSCSSSCHHH
T ss_pred cCCCCcccccceEEEEecCC-CCceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCCCcchhHHH
Confidence 0 000111111 12478999999543 112233344 5789999999998643322221
Q ss_pred hhhHHHHHhhhCCCCCEEEEeeCcccccC
Q 044772 114 KKKWVPELRHYAPSVPIVLVGTKLDLRKD 142 (159)
Q Consensus 114 ~~~~~~~i~~~~~~~piilv~nK~Dl~~~ 142 (159)
.++..+.. .+.|+++|.||+|+.+.
T Consensus 208 --~ll~~L~~--~g~pvIlVlNKiDlv~~ 232 (772)
T 3zvr_A 208 --KIAKEVDP--QGQRTIGVITKLDLMDE 232 (772)
T ss_dssp --HHHHHHCT--TCSSEEEEEECTTSSCT
T ss_pred --HHHHHHHh--cCCCEEEEEeCcccCCc
Confidence 33444433 36899999999998754
No 204
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=99.01 E-value=2.5e-10 Score=88.11 Aligned_cols=82 Identities=18% Similarity=0.140 Sum_probs=54.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCC-CCCccc-ceeeeeEEEEEECC-------------------eEEEEEEEeCCCcc
Q 044772 23 IKCVTVRDGAVGKTCLLISYTGNTF-PTDYVP-TVFDNFSANVMVDG-------------------RTVNLGLWDTAGQE 81 (159)
Q Consensus 23 ~ki~vvG~~~~GKSsli~~l~~~~~-~~~~~~-t~~~~~~~~~~~~~-------------------~~~~~~i~D~~g~~ 81 (159)
++|.++|.+|||||||+++|.+... ..++.. |...+.. ...+.+ ....+.+||+||..
T Consensus 2 ~~v~IVG~pnvGKSTL~n~L~~~~~~v~~~p~~Ti~pn~g-~~~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvDtpGl~ 80 (368)
T 2dby_A 2 LAVGIVGLPNVGKSTLFNALTRANALAANYPFATIDKNVG-VVPLEDERLYALQRTFAKGERVPPVVPTHVEFVDIAGLV 80 (368)
T ss_dssp CSEEEECCSSSSHHHHHHHHHHHHTTCSSCCGGGGSTTEE-EEECCCHHHHHHHHHHCBTTBCCCEECCEEEEEECCSCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCcccCCCCceecccee-eEecChHHHHHHHHHhcccccccccCCceEEEEECCCcc
Confidence 5799999999999999999997642 222222 2222221 112221 23469999999986
Q ss_pred cccc----c---ccccccCCcEEEEEEeCCC
Q 044772 82 DYNR----L---RPLSYRGADVFILAFSLIS 105 (159)
Q Consensus 82 ~~~~----~---~~~~~~~~~~~i~v~d~~~ 105 (159)
.... + ...+++.+|++++|+|+.+
T Consensus 81 ~~a~~~~~lg~~fl~~ir~ad~ii~VvD~~~ 111 (368)
T 2dby_A 81 KGAHKGEGLGNQFLAHIREVAAIAHVLRCFP 111 (368)
T ss_dssp CCCCSSSCTTHHHHHHHHTCSEEEEEEECCC
T ss_pred ccccccchHHHHHHHHHHhCCEEEEEEECCC
Confidence 5432 2 1234789999999999975
No 205
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=99.01 E-value=3.5e-10 Score=82.84 Aligned_cols=72 Identities=11% Similarity=0.013 Sum_probs=41.9
Q ss_pred EEEEEEeCCCccccccccc------ccccCCcEEEEEEeCCChhhHHhhhh-hhHHHHHhhhCCCCCEEEEeeCcccccC
Q 044772 70 VNLGLWDTAGQEDYNRLRP------LSYRGADVFILAFSLISRPSYENISK-KKWVPELRHYAPSVPIVLVGTKLDLRKD 142 (159)
Q Consensus 70 ~~~~i~D~~g~~~~~~~~~------~~~~~~~~~i~v~d~~~~~s~~~~~~-~~~~~~i~~~~~~~piilv~nK~Dl~~~ 142 (159)
+.+.+|||+|......... ..+.+ +++|+++|............ ..+.... ....+.|+++|+||+|+...
T Consensus 109 ~d~iiiDtpG~~~~~~~~~l~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~~-~~~~~~p~~iv~NK~D~~~~ 186 (262)
T 1yrb_A 109 NDYVLIDTPGQMETFLFHEFGVRLMENLPY-PLVVYISDPEILKKPNDYCFVRFFALLI-DLRLGATTIPALNKVDLLSE 186 (262)
T ss_dssp CSEEEEECCSSHHHHHHSHHHHHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHHHHH-HHHHTSCEEEEECCGGGCCH
T ss_pred CCEEEEeCCCccchhhhhhhHHHHHHHHhh-ceEEeccchhhhcCHHHHHHHHHHHHHH-hcccCCCeEEEEeccccccc
Confidence 5799999999865533221 24456 78888888653322222211 0111111 11136899999999998754
Q ss_pred c
Q 044772 143 R 143 (159)
Q Consensus 143 r 143 (159)
+
T Consensus 187 ~ 187 (262)
T 1yrb_A 187 E 187 (262)
T ss_dssp H
T ss_pred c
Confidence 4
No 206
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=98.99 E-value=2.3e-11 Score=93.39 Aligned_cols=60 Identities=17% Similarity=0.139 Sum_probs=35.5
Q ss_pred EEEEEEeCCCcccccccccccccCCcEEEEEEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCccccc
Q 044772 70 VNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRK 141 (159)
Q Consensus 70 ~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~ 141 (159)
+.+.++|++|.... .......+|.+++|+|..+......+. . .+ -+.|.++|+||+|+..
T Consensus 167 ~~~iliDT~Gi~~~---~~~l~~~~d~vl~V~d~~~~~~~~~i~--~---~i----l~~~~ivVlNK~Dl~~ 226 (349)
T 2www_A 167 YDIILIETVGVGQS---EFAVADMVDMFVLLLPPAGGDELQGIK--R---GI----IEMADLVAVTKSDGDL 226 (349)
T ss_dssp CSEEEEECCCC--C---HHHHHTTCSEEEEEECCC---------------------CCSCSEEEECCCSGGG
T ss_pred CCEEEEECCCcchh---hhhHHhhCCEEEEEEcCCcchhHHHhH--H---HH----HhcCCEEEEeeecCCC
Confidence 45789999995311 123356899999999988654322221 1 11 1457899999999864
No 207
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=98.95 E-value=1e-10 Score=89.41 Aligned_cols=61 Identities=21% Similarity=0.119 Sum_probs=38.7
Q ss_pred EEEEEEeCCCcccccccccccccCCcEEEEEEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCcccccC
Q 044772 70 VNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKD 142 (159)
Q Consensus 70 ~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~ 142 (159)
+.+.+|||+|...+... ....+|++++|+|......+..+. . ... +.|.++|+||+|+...
T Consensus 149 ~~i~liDTpG~~~~~~~---~~~~aD~vl~Vvd~~~~~~~~~l~--~---~~~----~~p~ivv~NK~Dl~~~ 209 (341)
T 2p67_A 149 YDVVIVETVGVGQSETE---VARMVDCFISLQIAGGGDDLQGIK--K---GLM----EVADLIVINKDDGDNH 209 (341)
T ss_dssp CSEEEEEEECCTTHHHH---HHTTCSEEEEEECC------CCCC--H---HHH----HHCSEEEECCCCTTCH
T ss_pred CCEEEEeCCCccchHHH---HHHhCCEEEEEEeCCccHHHHHHH--H---hhh----cccCEEEEECCCCCCh
Confidence 56999999996543322 357899999999987654432221 1 111 3588999999999754
No 208
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=98.80 E-value=8.8e-09 Score=80.04 Aligned_cols=86 Identities=20% Similarity=0.174 Sum_probs=56.4
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCC-CC-CcccceeeeeEEEEEECCe---------------EEEEEEEeCCCccc
Q 044772 20 TKFIKCVTVRDGAVGKTCLLISYTGNTF-PT-DYVPTVFDNFSANVMVDGR---------------TVNLGLWDTAGQED 82 (159)
Q Consensus 20 ~~~~ki~vvG~~~~GKSsli~~l~~~~~-~~-~~~~t~~~~~~~~~~~~~~---------------~~~~~i~D~~g~~~ 82 (159)
....++.++|++|+|||||++.|.+... .. ++..+.-......+.+.+. ...+.+||++|...
T Consensus 18 ~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl~~ 97 (392)
T 1ni3_A 18 GNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTK 97 (392)
T ss_dssp SSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEecccccc
Confidence 4567999999999999999999998765 32 2222222112333444431 13589999999543
Q ss_pred c-------cccccccccCCcEEEEEEeCCC
Q 044772 83 Y-------NRLRPLSYRGADVFILAFSLIS 105 (159)
Q Consensus 83 ~-------~~~~~~~~~~~~~~i~v~d~~~ 105 (159)
. ...+...++.+++++.|+|+.+
T Consensus 98 ~~s~~e~L~~~fl~~ir~~d~il~Vvd~~~ 127 (392)
T 1ni3_A 98 GASTGVGLGNAFLSHVRAVDAIYQVVRAFD 127 (392)
T ss_dssp CCCSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 2 1223344678999999999864
No 209
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.70 E-value=1.2e-07 Score=74.30 Aligned_cols=114 Identities=16% Similarity=0.172 Sum_probs=59.3
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcc----ccee-eeeEEEEEECCeEEEEEEEeCCCccccc-----------
Q 044772 21 KFIKCVTVRDGAVGKTCLLISYTGNTFPTDYV----PTVF-DNFSANVMVDGRTVNLGLWDTAGQEDYN----------- 84 (159)
Q Consensus 21 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~----~t~~-~~~~~~~~~~~~~~~~~i~D~~g~~~~~----------- 84 (159)
..++++|+|++|+|||||++.|.+..+..... +... ..........+....+.++|++|.....
T Consensus 41 ei~~vaLvG~nGaGKSTLln~L~G~~l~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~D~~~~g~~~~~~~~~~~i~~ 120 (427)
T 2qag_B 41 FCFNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQESNVRLKLTIVSTVGFGDQINKEDSYKPIVE 120 (427)
T ss_dssp CEEEEEEECSTTSSSHHHHHHHHTSCC-------CCSSCEEEEEEEEEEC--CEEEEEEEEEECCCC-CCHHHHSHHHHH
T ss_pred CeeEEEEECCCCCCHHHHHHHHhCccccCCcCCCCCccceEeeEEEEeecCccccccchhhhhhhhhccccchhhhHHHH
Confidence 34579999999999999999999875432111 1110 0011111112233468899987643210
Q ss_pred -------ccccc---------cccCC--cE-EEEEEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCcccc
Q 044772 85 -------RLRPL---------SYRGA--DV-FILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLR 140 (159)
Q Consensus 85 -------~~~~~---------~~~~~--~~-~i~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~ 140 (159)
..... .+.++ |. ++|+.|.... +...+. .++..+. .++|+|+|.||+|..
T Consensus 121 ~i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~--l~~~Di-eilk~L~---~~~~vI~Vi~KtD~L 189 (427)
T 2qag_B 121 FIDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHS--LKSLDL-VTMKKLD---SKVNIIPIIAKADAI 189 (427)
T ss_dssp HHHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC-----CHHHH-HHHHHTC---SCSEEEEEESCGGGS
T ss_pred HHHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCC--CCHHHH-HHHHHHh---hCCCEEEEEcchhcc
Confidence 00011 12233 33 5556665533 222222 4445443 478999999999975
No 210
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=98.70 E-value=8.8e-09 Score=79.53 Aligned_cols=109 Identities=11% Similarity=0.070 Sum_probs=63.5
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcC------CCCCC-cccceeeeeEEEEEECCeEEEEEEEeCCCccccccc--------
Q 044772 22 FIKCVTVRDGAVGKTCLLISYTGN------TFPTD-YVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRL-------- 86 (159)
Q Consensus 22 ~~ki~vvG~~~~GKSsli~~l~~~------~~~~~-~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~-------- 86 (159)
..+++++|.+|+|||||+|.|++. ..... ...+.. ......++.. +.++||||-......
T Consensus 162 ~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~gtT~--~~~~~~~~~~---~~liDtPG~~~~~~~~~~l~~~~ 236 (369)
T 3ec1_A 162 GGDVYVVGCTNVGKSTFINRIIEEATGKGNVITTSYFPGTTL--DMIEIPLESG---ATLYDTPGIINHHQMAHFVDARD 236 (369)
T ss_dssp TSCEEEECCTTSSHHHHHHHHHHHHHHTTCCCEEEECTTSSC--EEEEEECSTT---CEEEECCSCCCCSSGGGGSCTTT
T ss_pred cCcEEEEcCCCCchHHHHHHHHhhccCCccceeecCCCCeEE--eeEEEEeCCC---eEEEeCCCcCcHHHHHHHHhHHH
Confidence 357999999999999999999975 22111 111111 1122333332 789999995432211
Q ss_pred ccccc--cCCcEEEEEEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCcccc
Q 044772 87 RPLSY--RGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLR 140 (159)
Q Consensus 87 ~~~~~--~~~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~ 140 (159)
...++ +..+.++++.+....-.+..+...+++.. .+.|++++.||.|..
T Consensus 237 l~~~~~~~~i~~~~~~l~~~~~~~~g~l~~l~~l~~-----~~~~~~~v~~k~d~~ 287 (369)
T 3ec1_A 237 LKIITPKREIHPRVYQLNEGQTLFFGGLARLDYIKG-----GRRSFVCYMANELTV 287 (369)
T ss_dssp HHHHSCSSCCCCEEEEECTTEEEEETTTEEEEEEES-----SSEEEEEEECTTSCE
T ss_pred HHHHhcccccCceEEEEcCCceEEECCEEEEEEccC-----CCceEEEEecCCccc
Confidence 11122 56788888888743222222221122221 367999999999974
No 211
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=98.69 E-value=1.9e-08 Score=75.60 Aligned_cols=61 Identities=20% Similarity=0.117 Sum_probs=51.4
Q ss_pred cccccccccccccCCcEEEEEEeCCChh-hHHhhhhhhHHHHHhhhCCCCCEEEEeeCcccccCcc
Q 044772 80 QEDYNRLRPLSYRGADVFILAFSLISRP-SYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKDRQ 144 (159)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~-s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~r~ 144 (159)
++++..+.+.++.++|.+++|||++++. ++..+. .|+..+.. .++|++||+||+|+.+.+.
T Consensus 66 ~er~~~l~r~~~~naD~vliV~d~~~p~~s~~~l~--~~l~~~~~--~~~~~ilV~NK~DL~~~~~ 127 (302)
T 2yv5_A 66 EERKNLLIRPKVANVDRVIIVETLKMPEFNNYLLD--NMLVVYEY--FKVEPVIVFNKIDLLNEEE 127 (302)
T ss_dssp CCCSCEEETTEEESCCEEEEEECSTTTTCCHHHHH--HHHHHHHH--TTCEEEEEECCGGGCCHHH
T ss_pred CChHHHHhHHHHHhcCEEEEEEECCCCCCCHHHHH--HHHHHHHh--CCCCEEEEEEcccCCCccc
Confidence 5677777788999999999999999886 888777 88887665 5799999999999976553
No 212
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=98.67 E-value=6.7e-08 Score=71.58 Aligned_cols=115 Identities=16% Similarity=0.141 Sum_probs=61.8
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCCcc------cceeeeeEEEEE--EC--CeEEEEEEEeCCCcccccc------
Q 044772 22 FIKCVTVRDGAVGKTCLLISYTGNTFPTDYV------PTVFDNFSANVM--VD--GRTVNLGLWDTAGQEDYNR------ 85 (159)
Q Consensus 22 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~------~t~~~~~~~~~~--~~--~~~~~~~i~D~~g~~~~~~------ 85 (159)
.++++++|++|+|||||++.|.+......-. +.........+. .. +-...+.++|++|......
T Consensus 2 ~f~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~~~ 81 (270)
T 3sop_A 2 DFNIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENCWE 81 (270)
T ss_dssp EEEEEEEESSSSSHHHHHHHHHHHHC------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBCTTCSH
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhcccHHHHH
Confidence 5789999999999999999998654321100 000000001111 11 2223578999887321100
Q ss_pred ----------------------cccccccCCcEEEEEEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCccccc
Q 044772 86 ----------------------LRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRK 141 (159)
Q Consensus 86 ----------------------~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~ 141 (159)
..+..+..+++.+++.|-.. ..+...+. ..+..+.. ..++++|.+|.|...
T Consensus 82 ~i~~~~~~~~~~~~~~~LS~G~~qrv~iaRal~~lllldep~-~gL~~lD~-~~l~~L~~---~~~vI~Vi~K~D~lt 154 (270)
T 3sop_A 82 PIEKYINEQYEKFLKEEVNIARKKRIPDTRVHCCLYFISPTG-HSLRPLDL-EFMKHLSK---VVNIIPVIAKADTMT 154 (270)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTCCSSCCCCSCCEEEEEECCCS-SSCCHHHH-HHHHHHHT---TSEEEEEETTGGGSC
T ss_pred HHHHHHHHHHHhhhHHhcCcccchhhhhheeeeeeEEEecCC-CcCCHHHH-HHHHHHHh---cCcEEEEEeccccCC
Confidence 01112334677888888542 12222222 55555554 389999999999753
No 213
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=98.66 E-value=1.3e-08 Score=78.58 Aligned_cols=112 Identities=10% Similarity=0.025 Sum_probs=62.6
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCC---C--cccceeeee-EEEEEECCeEEEEEEEeCCCccccccc--------c
Q 044772 22 FIKCVTVRDGAVGKTCLLISYTGNTFPT---D--YVPTVFDNF-SANVMVDGRTVNLGLWDTAGQEDYNRL--------R 87 (159)
Q Consensus 22 ~~ki~vvG~~~~GKSsli~~l~~~~~~~---~--~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~--------~ 87 (159)
..+++++|.+|+|||||+|+|++..... . .....+.+. .....++.. +.++||||-...... .
T Consensus 160 ~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~~---~~liDtPG~~~~~~~~~~l~~~~l 236 (368)
T 3h2y_A 160 GKDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLDLIDIPLDEE---SSLYDTPGIINHHQMAHYVGKQSL 236 (368)
T ss_dssp TSCEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC----CEEEEESSSS---CEEEECCCBCCTTSGGGGSCHHHH
T ss_pred cceEEEecCCCCChhHHHHHHHhhhccccccceecCCCCCeecceEEEEecCC---eEEEeCCCcCcHHHHHHHhhHHHH
Confidence 3589999999999999999999753111 0 001111111 122233332 789999996432211 1
Q ss_pred ccc--ccCCcEEEEEEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCccccc
Q 044772 88 PLS--YRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRK 141 (159)
Q Consensus 88 ~~~--~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~ 141 (159)
..+ ....+.++++++....-.+..+...+++.. .+.|+++++||.|...
T Consensus 237 ~~~~~~~~i~~~~~~l~~~~~~~~g~l~~~d~l~~-----~~~~~~~v~nk~d~~~ 287 (368)
T 3h2y_A 237 KLITPTKEIKPMVFQLNEEQTLFFSGLARFDYVSG-----GRRAFTCHFSNRLTIH 287 (368)
T ss_dssp HHHSCSSCCCCEEEEECTTEEEEETTTEEEEEEES-----SSEEEEEEECTTSCEE
T ss_pred HHhccccccCceEEEEcCCCEEEEcceEEEEEecC-----CCceEEEEecCccccc
Confidence 111 245677888887643222222221122221 3679999999999753
No 214
>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}
Probab=98.61 E-value=1.1e-08 Score=72.94 Aligned_cols=62 Identities=10% Similarity=-0.007 Sum_probs=40.4
Q ss_pred CCcccccccccccccCCcEEEEEEeCCChhhHHhhhhhhH---HHHHhhhC--CCCCEEEEeeCc-cccc
Q 044772 78 AGQEDYNRLRPLSYRGADVFILAFSLISRPSYENISKKKW---VPELRHYA--PSVPIVLVGTKL-DLRK 141 (159)
Q Consensus 78 ~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~---~~~i~~~~--~~~piilv~nK~-Dl~~ 141 (159)
+||+.++..|++||.++|++|||+|.+|++.+. ... .+ ...+.... .++|++|++||. |++.
T Consensus 110 GGQ~klRplWr~Yy~~TdglIfVVDSsD~~R~e-ak~-EL~eL~~mL~ee~~L~gapLLVlANKqqDlp~ 177 (227)
T 3l82_B 110 GSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQD-EFSHIMAMTDPAFGSSGRPLLVLSCISQGDVK 177 (227)
T ss_dssp -------CCHHHHHHHCSEEEEEEECBTTCCCC-HHH-HHHHHHHHSCTTSSCSCSCEEEEEEESSTTSC
T ss_pred CcHHHHHHHHHHHhcCCCEEEEEeccccHhHHH-HHH-HHHHHHHHhcchhhhCCCeEEEEeCCCcCccC
Confidence 478899999999999999999999999987654 322 33 22232321 478999999995 7753
No 215
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=98.54 E-value=3.6e-08 Score=75.20 Aligned_cols=60 Identities=15% Similarity=0.093 Sum_probs=35.0
Q ss_pred EEEEEEeCCCcccccccccccccCCcEEEEEEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCccccc
Q 044772 70 VNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRK 141 (159)
Q Consensus 70 ~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~ 141 (159)
+.+.++||+|...-.. .....+|.+++++|....+....+. ..+. +.+.+++.||+|+..
T Consensus 148 ~~~iliDT~Gi~~~~~---~v~~~~d~vl~v~d~~~~~~~~~i~--~~i~-------~~~~ivvlNK~Dl~~ 207 (337)
T 2qm8_A 148 FDVILVETVGVGQSET---AVADLTDFFLVLMLPGAGDELQGIK--KGIF-------ELADMIAVNKADDGD 207 (337)
T ss_dssp CCEEEEEECSSSSCHH---HHHTTSSEEEEEECSCC------CC--TTHH-------HHCSEEEEECCSTTC
T ss_pred CCEEEEECCCCCcchh---hHHhhCCEEEEEEcCCCcccHHHHH--HHHh-------ccccEEEEEchhccC
Confidence 5689999999642211 2246799999999986443322222 2221 135567779999743
No 216
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.46 E-value=2.1e-07 Score=69.26 Aligned_cols=58 Identities=21% Similarity=0.154 Sum_probs=35.4
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeee-EEEEEECCeEEEEEEEeCCCcc
Q 044772 20 TKFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNF-SANVMVDGRTVNLGLWDTAGQE 81 (159)
Q Consensus 20 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~ 81 (159)
...++++++|.+|||||||+|+|.+...... .+..+.+. ...+..+. .+.+|||||..
T Consensus 118 ~~~~~v~~vG~~nvGKSsliN~l~~~~~~~~-~~~~g~T~~~~~~~~~~---~~~l~DtpG~~ 176 (282)
T 1puj_A 118 PRAIRALIIGIPNVGKSTLINRLAKKNIAKT-GDRPGITTSQQWVKVGK---ELELLDTPGIL 176 (282)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHTSCCC-------------CCEEETT---TEEEEECCCCC
T ss_pred CCCceEEEEecCCCchHHHHHHHhcCceeec-CCCCCeeeeeEEEEeCC---CEEEEECcCcC
Confidence 3568999999999999999999997663211 11111111 11222232 37899999963
No 217
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=98.45 E-value=1.2e-07 Score=69.95 Aligned_cols=55 Identities=13% Similarity=0.088 Sum_probs=34.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeee-EEEEEECCeEEEEEEEeCCCcc
Q 044772 23 IKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNF-SANVMVDGRTVNLGLWDTAGQE 81 (159)
Q Consensus 23 ~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~ 81 (159)
++++++|.+|+|||||+|+|.+..... ..++.+.+. ...+..+. .+.+|||||..
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~~~-~~~~~g~T~~~~~~~~~~---~~~l~DtpG~~ 155 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRASS-VGAQPGITKGIQWFSLEN---GVKILDTPGIL 155 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC-----------CCSCEEECTT---SCEEESSCEEC
T ss_pred hheEEeCCCCCCHHHHHHHHhcccccc-cCCCCCCccceEEEEeCC---CEEEEECCCcc
Confidence 699999999999999999999776532 122222222 11222222 47899999964
No 218
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=98.37 E-value=7.5e-07 Score=71.29 Aligned_cols=114 Identities=14% Similarity=0.065 Sum_probs=62.6
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHh------cCCCC----CCcccce-----------eee-eEEEEE-------------
Q 044772 20 TKFIKCVTVRDGAVGKTCLLISYT------GNTFP----TDYVPTV-----------FDN-FSANVM------------- 64 (159)
Q Consensus 20 ~~~~ki~vvG~~~~GKSsli~~l~------~~~~~----~~~~~t~-----------~~~-~~~~~~------------- 64 (159)
.....|+++|.+||||||++++|. +.+.. ..+.+.. +.. +.....
T Consensus 99 ~~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v~~~~~~~dp~~i~~~al~~ 178 (504)
T 2j37_W 99 GKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEK 178 (504)
T ss_dssp S--EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHTCCEEECCCCSCHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhccCceEEccCCCCCHHHHHHHHHHH
Confidence 456789999999999999999998 33211 0111110 000 000000
Q ss_pred ECCeEEEEEEEeCCCcccccc-cccc---c--ccCCcEEEEEEeCCChhhHHhhhhhhHHHHHhhhCCCCCE-EEEeeCc
Q 044772 65 VDGRTVNLGLWDTAGQEDYNR-LRPL---S--YRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPI-VLVGTKL 137 (159)
Q Consensus 65 ~~~~~~~~~i~D~~g~~~~~~-~~~~---~--~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~pi-ilv~nK~ 137 (159)
.....+.+.|+||+|...... .... . +..++.+++|+|....... + .....+.. .+|+ ++|.||+
T Consensus 179 ~~~~~~DvvIIDTpG~~~~~~~l~~el~~~~~~i~pd~vllVvDa~~g~~~--~---~~a~~~~~---~~~i~gvVlNK~ 250 (504)
T 2j37_W 179 FKNENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQAC--E---AQAKAFKD---KVDVASVIVTKL 250 (504)
T ss_dssp HHHTTCCEEEEEECCCCTTCHHHHHHHHHHHHHHCCSEEEEEEETTCCTTH--H---HHHHHHHH---HHCCCCEEEECT
T ss_pred HHHCCCcEEEEeCCCCcccchhHHHHHHHHHhhhcCceEEEEEeccccccH--H---HHHHHHHh---hcCceEEEEeCC
Confidence 000235689999999653211 1111 1 1268899999998764321 1 22222222 2575 8999999
Q ss_pred cccc
Q 044772 138 DLRK 141 (159)
Q Consensus 138 Dl~~ 141 (159)
|...
T Consensus 251 D~~~ 254 (504)
T 2j37_W 251 DGHA 254 (504)
T ss_dssp TSCC
T ss_pred cccc
Confidence 9864
No 219
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=98.31 E-value=9.4e-08 Score=71.19 Aligned_cols=65 Identities=9% Similarity=-0.030 Sum_probs=45.2
Q ss_pred CCCcccccccccccccCCcEEEEEEeCCChhhHHhhhh-hhHHHHHhhh--CCCCCEEEEeeC-ccccc
Q 044772 77 TAGQEDYNRLRPLSYRGADVFILAFSLISRPSYENISK-KKWVPELRHY--APSVPIVLVGTK-LDLRK 141 (159)
Q Consensus 77 ~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~-~~~~~~i~~~--~~~~piilv~nK-~Dl~~ 141 (159)
.+||+.++..|++||.++|++|||+|.+|++.+....+ ..+...+... ..++|++|++|| .|++.
T Consensus 194 ~GGQ~~lRplWr~Yy~~tdglIfVVDSsDreRleak~EL~eL~~mL~e~~~l~~apLLVfANKkQDlp~ 262 (312)
T 3l2o_B 194 QGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVK 262 (312)
T ss_dssp ---CCCCCHHHHHHHHHCSEEEECCBCBTTCCCCHHHHHHHHHHHHCHHHHCTTCCEEEEEEESSTTSC
T ss_pred CCCHHHHHHHHHHHhcCCCEEEEEecCCcHhHHHHHHHHHHHHHHhcchhhcCCCeEEEEeCCcccccC
Confidence 35788899999999999999999999999887652221 0122223222 257999999996 68864
No 220
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=98.24 E-value=9.4e-07 Score=71.94 Aligned_cols=63 Identities=21% Similarity=0.093 Sum_probs=39.2
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccce-eeeeEEEEE---E-CCeEEEEEEEeCCCccc
Q 044772 20 TKFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTV-FDNFSANVM---V-DGRTVNLGLWDTAGQED 82 (159)
Q Consensus 20 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~-~~~~~~~~~---~-~~~~~~~~i~D~~g~~~ 82 (159)
....+|+|+|.+|+|||||+|+|++....-....+. ..+.....+ . ......+.++||||...
T Consensus 36 ~~~~~VaivG~pnvGKStLiN~L~g~~~~~~~~~tt~~~T~gi~~~~~~~~~~~~~~i~LiDTpGi~~ 103 (592)
T 1f5n_A 36 QPMVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLGD 103 (592)
T ss_dssp SBEEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBCC
T ss_pred CCCcEEEEECCCCCCHHHHHHhHcCCCCccccCCCCCCceeEEEEeecccccCCCceEEEecCCCcCc
Confidence 456789999999999999999999876321222222 111111111 1 11223588999999643
No 221
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=98.12 E-value=9.3e-06 Score=63.48 Aligned_cols=111 Identities=16% Similarity=0.175 Sum_probs=56.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCc-ccceeeee--EEEEEECCeEEEEEEEeCCCcccccccccc-----cccCC
Q 044772 23 IKCVTVRDGAVGKTCLLISYTGNTFPTDY-VPTVFDNF--SANVMVDGRTVNLGLWDTAGQEDYNRLRPL-----SYRGA 94 (159)
Q Consensus 23 ~ki~vvG~~~~GKSsli~~l~~~~~~~~~-~~t~~~~~--~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~-----~~~~~ 94 (159)
..+.++|++|+|||||++.+.+-.-...- ....+... ...+......-.+.+||++|.......... .+...
T Consensus 70 ~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~~~v~q~~~~~~ltv~D~~g~~~~~~~~~~~L~~~~L~~~ 149 (413)
T 1tq4_A 70 LNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPNIPNVVFWDLPGIGSTNFPPDTYLEKMKFYEY 149 (413)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEECSSCTTEEEEECCCGGGSSCCHHHHHHHTTGGGC
T ss_pred eEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecceeEEeccccccCCeeehHhhcccchHHHHHHHHHHcCCCcc
Confidence 37999999999999999999874322110 00000000 001111111114789999885321111111 13333
Q ss_pred cEEEEEEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCcccc
Q 044772 95 DVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLR 140 (159)
Q Consensus 95 ~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~ 140 (159)
+..++ ++....+ -+.+ .+...+.. .+.|+++|.||.|+.
T Consensus 150 ~~~~~-lS~G~~~-kqrv---~la~aL~~--~~~p~~lV~tkpdll 188 (413)
T 1tq4_A 150 DFFII-ISATRFK-KNDI---DIAKAISM--MKKEFYFVRTKVDSD 188 (413)
T ss_dssp SEEEE-EESSCCC-HHHH---HHHHHHHH--TTCEEEEEECCHHHH
T ss_pred CCeEE-eCCCCcc-HHHH---HHHHHHHh--cCCCeEEEEecCccc
Confidence 44444 7765211 1111 22222222 257999999999974
No 222
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=98.07 E-value=5.1e-06 Score=68.03 Aligned_cols=23 Identities=22% Similarity=0.387 Sum_probs=20.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 044772 24 KCVTVRDGAVGKTCLLISYTGNT 46 (159)
Q Consensus 24 ki~vvG~~~~GKSsli~~l~~~~ 46 (159)
.++|+|++|+|||||++.+.+-.
T Consensus 47 ~iaIvG~nGsGKSTLL~~I~Gl~ 69 (608)
T 3szr_A 47 AIAVIGDQSSGKSSVLEALSGVA 69 (608)
T ss_dssp CEECCCCTTSCHHHHHHHHHSCC
T ss_pred eEEEECCCCChHHHHHHHHhCCC
Confidence 49999999999999999998764
No 223
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=97.96 E-value=1.6e-07 Score=74.61 Aligned_cols=99 Identities=14% Similarity=-0.044 Sum_probs=58.4
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeee---eEEEEEECCeEEEEEEEeCCCccc--ccccc-------
Q 044772 20 TKFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDN---FSANVMVDGRTVNLGLWDTAGQED--YNRLR------- 87 (159)
Q Consensus 20 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~---~~~~~~~~~~~~~~~i~D~~g~~~--~~~~~------- 87 (159)
....+|+++|.+|+||||+.++|....... ..++.... +.. ...+......+||..|.+. +...+
T Consensus 37 ~~~~~IvlvGlpGsGKSTia~~La~~l~~~-~~~t~~~~~d~~r~--~~~g~~~~~~ifd~~g~~~~r~re~~~~~~l~~ 113 (469)
T 1bif_A 37 NCPTLIVMVGLPARGKTYISKKLTRYLNFI-GVPTREFNVGQYRR--DMVKTYKSFEFFLPDNEEGLKIRKQCALAALND 113 (469)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHHT-TCCEEEEEHHHHHH--HHHCSCCCGGGGCTTCHHHHHHHHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHHhcc-CCCceEEecchhhh--hhccCCCcccccCCCCHHHHHHHHHHHHHHHHH
Confidence 456789999999999999999987432110 11121110 000 0011112346889888732 22222
Q ss_pred -cccccCCcEEEEEEeCCChhhHHhhhhhhHHHHHhhh
Q 044772 88 -PLSYRGADVFILAFSLISRPSYENISKKKWVPELRHY 124 (159)
Q Consensus 88 -~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~ 124 (159)
..++....+.++|+|.++. ++.... .|+..+...
T Consensus 114 ~~~~l~~~~G~~vV~D~tn~-~~~~R~--~~~~~~~~~ 148 (469)
T 1bif_A 114 VRKFLSEEGGHVAVFDATNT-TRERRA--MIFNFGEQN 148 (469)
T ss_dssp HHHHHHTTCCSEEEEESCCC-SHHHHH--HHHHHHHHH
T ss_pred HHHHHHhCCCCEEEEeCCCC-CHHHHH--HHHHHHHhc
Confidence 4566667888999999987 455555 676666554
No 224
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=97.83 E-value=1.6e-05 Score=62.50 Aligned_cols=65 Identities=18% Similarity=0.112 Sum_probs=38.7
Q ss_pred EEEEEEEeCCCccccccc----c--cccccCCcEEEEEEeCCChhhHHhhhhhhHHHHHhhhCCCC-C-EEEEeeCcccc
Q 044772 69 TVNLGLWDTAGQEDYNRL----R--PLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSV-P-IVLVGTKLDLR 140 (159)
Q Consensus 69 ~~~~~i~D~~g~~~~~~~----~--~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~-p-iilv~nK~Dl~ 140 (159)
.+.+.|+|++|....... . ...+..++.+++|.|..... ... .....+ .+.. | ..+|.||+|..
T Consensus 180 ~~D~vIIDT~G~~~~~~~l~~~l~~i~~~~~~d~vllVvda~~g~---~~~--~~~~~~---~~~~~~i~gvVlnK~D~~ 251 (432)
T 2v3c_C 180 KADVLIIDTAGRHKEEKGLLEEMKQIKEITNPDEIILVIDGTIGQ---QAG--IQAKAF---KEAVGEIGSIIVTKLDGS 251 (432)
T ss_dssp SCSEEEEECCCSCSSHHHHHHHHHHTTSSSCCSEEEEEEEGGGGG---GHH--HHHHHH---HTTSCSCEEEEEECSSSC
T ss_pred CCCEEEEcCCCCccccHHHHHHHHHHHHHhcCcceeEEeeccccH---HHH--HHHHHH---hhcccCCeEEEEeCCCCc
Confidence 356899999996432110 0 11233689999999976432 111 222222 2345 6 89999999975
Q ss_pred c
Q 044772 141 K 141 (159)
Q Consensus 141 ~ 141 (159)
.
T Consensus 252 ~ 252 (432)
T 2v3c_C 252 A 252 (432)
T ss_dssp S
T ss_pred c
Confidence 3
No 225
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=97.80 E-value=6.7e-06 Score=63.37 Aligned_cols=57 Identities=19% Similarity=0.391 Sum_probs=46.2
Q ss_pred CcccccccccccccCCcEEEEEEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCcccccC
Q 044772 79 GQEDYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKD 142 (159)
Q Consensus 79 g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~ 142 (159)
..+.|...+.++++.++++++|+|+.++. . .|...+.++..+.|+++|+||+|+...
T Consensus 55 ~~e~f~~~l~~i~~~~~~il~VvD~~d~~-----~--~~~~~l~~~~~~~p~ilV~NK~DL~~~ 111 (368)
T 3h2y_A 55 TDDDFLRILNGIGKSDALVVKIVDIFDFN-----G--SWLPGLHRFVGNNKVLLVGNKADLIPK 111 (368)
T ss_dssp -CHHHHHHHHHHHHSCCEEEEEEETTSHH-----H--HCCTTHHHHSSSSCEEEEEECGGGSCT
T ss_pred CHHHHHHHHHHHhccCcEEEEEEECCCCc-----c--cHHHHHHHHhCCCcEEEEEEChhcCCc
Confidence 35788888899999999999999999854 2 666666666668999999999999653
No 226
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=97.69 E-value=6.1e-05 Score=59.32 Aligned_cols=23 Identities=22% Similarity=0.085 Sum_probs=20.5
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHh
Q 044772 21 KFIKCVTVRDGAVGKTCLLISYT 43 (159)
Q Consensus 21 ~~~ki~vvG~~~~GKSsli~~l~ 43 (159)
.+..|+++|++|+||||++.+|.
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA 121 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLA 121 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHH
Confidence 46789999999999999998886
No 227
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=97.65 E-value=1.1e-05 Score=62.13 Aligned_cols=57 Identities=21% Similarity=0.371 Sum_probs=45.0
Q ss_pred CcccccccccccccCCcEEEEEEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCcccccC
Q 044772 79 GQEDYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKD 142 (159)
Q Consensus 79 g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~ 142 (159)
.++.|...+.+++.+++++++|+|+.++.+ .|...+.+...+.|+++|+||+|+...
T Consensus 57 ~~e~f~~~L~~~~~~~~lil~VvD~~d~~~-------s~~~~l~~~l~~~piilV~NK~DLl~~ 113 (369)
T 3ec1_A 57 DDDDFLSMLHRIGESKALVVNIVDIFDFNG-------SFIPGLPRFAADNPILLVGNKADLLPR 113 (369)
T ss_dssp --CHHHHHHHHHHHHCCEEEEEEETTCSGG-------GCCSSHHHHCTTSCEEEEEECGGGSCT
T ss_pred CHHHHHHHHHHhhccCcEEEEEEECCCCCC-------chhhHHHHHhCCCCEEEEEEChhcCCC
Confidence 367888888888899999999999998763 455555555568899999999999653
No 228
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=97.63 E-value=3.4e-05 Score=54.40 Aligned_cols=29 Identities=10% Similarity=0.039 Sum_probs=22.4
Q ss_pred CCcceeeEEEEEcCCCCCHHHHHHHHhcC
Q 044772 17 TTATKFIKCVTVRDGAVGKTCLLISYTGN 45 (159)
Q Consensus 17 ~~~~~~~ki~vvG~~~~GKSsli~~l~~~ 45 (159)
.+.....-|+|+|++|+|||||+++|...
T Consensus 14 ~~~~~g~~ivl~GPSGaGKsTL~~~L~~~ 42 (197)
T 3ney_A 14 LYFQGRKTLVLIGASGVGRSHIKNALLSQ 42 (197)
T ss_dssp --CCSCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCCCCCEEEEECcCCCCHHHHHHHHHhh
Confidence 34445556899999999999999999853
No 229
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=97.55 E-value=4.9e-05 Score=52.64 Aligned_cols=22 Identities=27% Similarity=0.350 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 044772 24 KCVTVRDGAVGKTCLLISYTGN 45 (159)
Q Consensus 24 ki~vvG~~~~GKSsli~~l~~~ 45 (159)
+++++|++|+|||||++.+.+.
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~ 23 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVER 23 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999988754
No 230
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=97.54 E-value=4.6e-05 Score=52.59 Aligned_cols=23 Identities=13% Similarity=0.117 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcC
Q 044772 23 IKCVTVRDGAVGKTCLLISYTGN 45 (159)
Q Consensus 23 ~ki~vvG~~~~GKSsli~~l~~~ 45 (159)
.-++++|++|||||||++.|.+.
T Consensus 6 ~~i~i~GpsGsGKSTL~~~L~~~ 28 (180)
T 1kgd_A 6 KTLVLLGAHGVGRRHIKNTLITK 28 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 36899999999999999999853
No 231
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=97.50 E-value=5.6e-05 Score=53.05 Aligned_cols=22 Identities=23% Similarity=0.169 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHhc
Q 044772 23 IKCVTVRDGAVGKTCLLISYTG 44 (159)
Q Consensus 23 ~ki~vvG~~~~GKSsli~~l~~ 44 (159)
..++|+|++|+|||||++.|.+
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~ 26 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQ 26 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 3689999999999999998875
No 232
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Probab=97.50 E-value=0.00018 Score=56.74 Aligned_cols=26 Identities=12% Similarity=0.018 Sum_probs=22.0
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcC
Q 044772 20 TKFIKCVTVRDGAVGKTCLLISYTGN 45 (159)
Q Consensus 20 ~~~~ki~vvG~~~~GKSsli~~l~~~ 45 (159)
.+..-|.|+|++++|||+|+|+|++.
T Consensus 65 ~~v~vVsV~G~~~~GKStLLN~llg~ 90 (447)
T 3q5d_A 65 KEVVAVSVAGAFRKGKSFLMDFMLRY 90 (447)
T ss_dssp SBEEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CceEEEEEECCCCCcHHHHHHHHhhh
Confidence 34556889999999999999999863
No 233
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=97.39 E-value=9.1e-05 Score=51.29 Aligned_cols=21 Identities=24% Similarity=0.254 Sum_probs=18.8
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 044772 25 CVTVRDGAVGKTCLLISYTGN 45 (159)
Q Consensus 25 i~vvG~~~~GKSsli~~l~~~ 45 (159)
++|+|++|+|||||++.|.+.
T Consensus 4 i~l~GpsGaGKsTl~~~L~~~ 24 (186)
T 3a00_A 4 IVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp EEEESSSSSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHhh
Confidence 789999999999999998743
No 234
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=97.37 E-value=9.9e-05 Score=52.79 Aligned_cols=23 Identities=13% Similarity=0.206 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcC
Q 044772 23 IKCVTVRDGAVGKTCLLISYTGN 45 (159)
Q Consensus 23 ~ki~vvG~~~~GKSsli~~l~~~ 45 (159)
--++|+|++|||||||++.|.+.
T Consensus 17 ~ii~l~GpsGsGKSTLlk~L~g~ 39 (219)
T 1s96_A 17 TLYIVSAPSGAGKSSLIQALLKT 39 (219)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhcc
Confidence 35889999999999999998864
No 235
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=97.36 E-value=0.0001 Score=51.96 Aligned_cols=24 Identities=21% Similarity=0.109 Sum_probs=20.4
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcC
Q 044772 22 FIKCVTVRDGAVGKTCLLISYTGN 45 (159)
Q Consensus 22 ~~ki~vvG~~~~GKSsli~~l~~~ 45 (159)
.--++++|++|+|||||++.+.+-
T Consensus 20 Gei~~l~GpnGsGKSTLl~~l~gl 43 (207)
T 1znw_A 20 GRVVVLSGPSAVGKSTVVRCLRER 43 (207)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhh
Confidence 345889999999999999988754
No 236
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=97.36 E-value=0.0001 Score=51.40 Aligned_cols=22 Identities=18% Similarity=0.211 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 044772 24 KCVTVRDGAVGKTCLLISYTGN 45 (159)
Q Consensus 24 ki~vvG~~~~GKSsli~~l~~~ 45 (159)
-++++|++|||||||++.|.+.
T Consensus 9 ii~l~Gp~GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 9 LFIISAPSGAGKTSLVRALVKA 30 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHhh
Confidence 4889999999999999998764
No 237
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=97.36 E-value=0.00011 Score=51.22 Aligned_cols=21 Identities=24% Similarity=0.254 Sum_probs=19.0
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 044772 25 CVTVRDGAVGKTCLLISYTGN 45 (159)
Q Consensus 25 i~vvG~~~~GKSsli~~l~~~ 45 (159)
|+|+||+||||+||+++|+..
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~ 24 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 789999999999999999743
No 238
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=97.35 E-value=9.6e-05 Score=50.59 Aligned_cols=19 Identities=16% Similarity=0.176 Sum_probs=16.8
Q ss_pred EEEEEcCCCCCHHHHHHHH
Q 044772 24 KCVTVRDGAVGKTCLLISY 42 (159)
Q Consensus 24 ki~vvG~~~~GKSsli~~l 42 (159)
-++++|++|+|||||++.+
T Consensus 11 i~~l~G~nGsGKSTl~~~~ 29 (171)
T 4gp7_A 11 LVVLIGSSGSGKSTFAKKH 29 (171)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 4789999999999999953
No 239
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=97.35 E-value=0.00011 Score=50.74 Aligned_cols=23 Identities=9% Similarity=-0.009 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcC
Q 044772 23 IKCVTVRDGAVGKTCLLISYTGN 45 (159)
Q Consensus 23 ~ki~vvG~~~~GKSsli~~l~~~ 45 (159)
-.++++|++|+|||||++.|.+.
T Consensus 10 ~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 10 NILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp EEEEEEECTTSCHHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHHhc
Confidence 45899999999999999999764
No 240
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=97.33 E-value=0.00012 Score=52.21 Aligned_cols=23 Identities=22% Similarity=0.228 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcC
Q 044772 23 IKCVTVRDGAVGKTCLLISYTGN 45 (159)
Q Consensus 23 ~ki~vvG~~~~GKSsli~~l~~~ 45 (159)
-.++|+|++|+|||||++.|.+-
T Consensus 24 ~~~~lvGpsGsGKSTLl~~L~g~ 46 (218)
T 1z6g_A 24 YPLVICGPSGVGKGTLIKKLLNE 46 (218)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 45899999999999999998763
No 241
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=97.28 E-value=0.00014 Score=51.26 Aligned_cols=23 Identities=17% Similarity=0.108 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcC
Q 044772 23 IKCVTVRDGAVGKTCLLISYTGN 45 (159)
Q Consensus 23 ~ki~vvG~~~~GKSsli~~l~~~ 45 (159)
.-|+++|++|+|||||++.|...
T Consensus 9 ~~i~l~GpsGsGKsTl~~~L~~~ 31 (208)
T 3tau_A 9 LLIVLSGPSGVGKGTVREAVFKD 31 (208)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHS
T ss_pred cEEEEECcCCCCHHHHHHHHHhh
Confidence 35889999999999999999854
No 242
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=97.23 E-value=0.00019 Score=50.52 Aligned_cols=25 Identities=12% Similarity=-0.029 Sum_probs=21.0
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhc
Q 044772 20 TKFIKCVTVRDGAVGKTCLLISYTG 44 (159)
Q Consensus 20 ~~~~ki~vvG~~~~GKSsli~~l~~ 44 (159)
.....+.|+|++|+|||||++.|.+
T Consensus 20 ~~g~~v~I~G~sGsGKSTl~~~l~~ 44 (208)
T 3c8u_A 20 PGRQLVALSGAPGSGKSTLSNPLAA 44 (208)
T ss_dssp CSCEEEEEECCTTSCTHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3456899999999999999987763
No 243
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=97.21 E-value=0.00018 Score=51.89 Aligned_cols=22 Identities=14% Similarity=0.019 Sum_probs=19.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 044772 24 KCVTVRDGAVGKTCLLISYTGN 45 (159)
Q Consensus 24 ki~vvG~~~~GKSsli~~l~~~ 45 (159)
-++++|++|+|||||++.+.+-
T Consensus 33 ~~~iiG~nGsGKSTLl~~l~Gl 54 (235)
T 3tif_A 33 FVSIMGPSGSGKSTMLNIIGCL 54 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhcC
Confidence 4899999999999999988753
No 244
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=97.21 E-value=0.0002 Score=50.20 Aligned_cols=22 Identities=23% Similarity=0.188 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHhc
Q 044772 23 IKCVTVRDGAVGKTCLLISYTG 44 (159)
Q Consensus 23 ~ki~vvG~~~~GKSsli~~l~~ 44 (159)
.-|+|+|++|||||||+++|..
T Consensus 13 ~~i~l~G~sGsGKsTl~~~L~~ 34 (204)
T 2qor_A 13 PPLVVCGPSGVGKGTLIKKVLS 34 (204)
T ss_dssp CCEEEECCTTSCHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4589999999999999999874
No 245
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=97.21 E-value=0.00026 Score=49.36 Aligned_cols=25 Identities=8% Similarity=0.163 Sum_probs=21.1
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhc
Q 044772 20 TKFIKCVTVRDGAVGKTCLLISYTG 44 (159)
Q Consensus 20 ~~~~ki~vvG~~~~GKSsli~~l~~ 44 (159)
.....|+|+|.+||||||+.+.|..
T Consensus 18 ~~~~~I~l~G~~GsGKST~a~~La~ 42 (201)
T 2cdn_A 18 GSHMRVLLLGPPGAGKGTQAVKLAE 42 (201)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3446799999999999999988863
No 246
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=97.21 E-value=0.00028 Score=50.43 Aligned_cols=21 Identities=10% Similarity=-0.035 Sum_probs=17.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 044772 24 KCVTVRDGAVGKTCLLISYTG 44 (159)
Q Consensus 24 ki~vvG~~~~GKSsli~~l~~ 44 (159)
-|+|+|+|||||+|...+|..
T Consensus 31 iI~llGpPGsGKgTqa~~L~~ 51 (217)
T 3umf_A 31 VIFVLGGPGSGKGTQCEKLVQ 51 (217)
T ss_dssp EEEEECCTTCCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 356789999999999888763
No 247
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=97.17 E-value=0.00025 Score=49.78 Aligned_cols=24 Identities=25% Similarity=0.094 Sum_probs=20.4
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhc
Q 044772 21 KFIKCVTVRDGAVGKTCLLISYTG 44 (159)
Q Consensus 21 ~~~ki~vvG~~~~GKSsli~~l~~ 44 (159)
....+.++|++|||||||++.|.+
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~ 28 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALAR 28 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHH
Confidence 335799999999999999988765
No 248
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=97.16 E-value=0.00031 Score=47.78 Aligned_cols=22 Identities=14% Similarity=0.116 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHhc
Q 044772 23 IKCVTVRDGAVGKTCLLISYTG 44 (159)
Q Consensus 23 ~ki~vvG~~~~GKSsli~~l~~ 44 (159)
.-|+++|++||||||+.++|..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4589999999999999999975
No 249
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=97.16 E-value=0.00024 Score=48.19 Aligned_cols=23 Identities=22% Similarity=0.056 Sum_probs=20.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 044772 24 KCVTVRDGAVGKTCLLISYTGNT 46 (159)
Q Consensus 24 ki~vvG~~~~GKSsli~~l~~~~ 46 (159)
-++++|++|+|||||++.+.+..
T Consensus 35 ~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 35 MVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHhC
Confidence 58899999999999999888654
No 250
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=97.15 E-value=0.00028 Score=48.67 Aligned_cols=26 Identities=19% Similarity=0.157 Sum_probs=21.7
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcC
Q 044772 20 TKFIKCVTVRDGAVGKTCLLISYTGN 45 (159)
Q Consensus 20 ~~~~ki~vvG~~~~GKSsli~~l~~~ 45 (159)
.+...|+++|.+||||||+.+.|...
T Consensus 8 ~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 8 PKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp CSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 34568999999999999999888654
No 251
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=97.14 E-value=0.00038 Score=48.52 Aligned_cols=24 Identities=8% Similarity=-0.004 Sum_probs=20.5
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHh
Q 044772 20 TKFIKCVTVRDGAVGKTCLLISYT 43 (159)
Q Consensus 20 ~~~~ki~vvG~~~~GKSsli~~l~ 43 (159)
.....|+|.|.+||||||+.+.|.
T Consensus 13 ~~~~~I~l~G~~GsGKsT~~~~L~ 36 (203)
T 1ukz_A 13 DQVSVIFVLGGPGAGKGTQCEKLV 36 (203)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHH
Confidence 344679999999999999998886
No 252
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=97.14 E-value=0.00033 Score=47.68 Aligned_cols=22 Identities=14% Similarity=0.060 Sum_probs=19.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHhc
Q 044772 23 IKCVTVRDGAVGKTCLLISYTG 44 (159)
Q Consensus 23 ~ki~vvG~~~~GKSsli~~l~~ 44 (159)
..++++|++|+||||+++.|..
T Consensus 9 ~~i~l~G~~GsGKSTl~~~l~~ 30 (175)
T 1knq_A 9 HIYVLMGVSGSGKSAVASEVAH 30 (175)
T ss_dssp EEEEEECSTTSCHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHH
Confidence 4689999999999999988753
No 253
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.14 E-value=0.00026 Score=48.01 Aligned_cols=22 Identities=14% Similarity=0.025 Sum_probs=19.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHhc
Q 044772 23 IKCVTVRDGAVGKTCLLISYTG 44 (159)
Q Consensus 23 ~ki~vvG~~~~GKSsli~~l~~ 44 (159)
..|+++|++||||||+++.|.+
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~ 26 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQ 26 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 3589999999999999998865
No 254
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=97.14 E-value=0.00025 Score=54.40 Aligned_cols=24 Identities=25% Similarity=0.281 Sum_probs=21.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCC
Q 044772 24 KCVTVRDGAVGKTCLLISYTGNTF 47 (159)
Q Consensus 24 ki~vvG~~~~GKSsli~~l~~~~~ 47 (159)
.++++|++|+|||||++.|.+...
T Consensus 217 ~~~lvG~sG~GKSTLln~L~g~~~ 240 (358)
T 2rcn_A 217 ISIFAGQSGVGKSSLLNALLGLQN 240 (358)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCSS
T ss_pred EEEEECCCCccHHHHHHHHhcccc
Confidence 689999999999999999997543
No 255
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=97.13 E-value=0.00023 Score=50.94 Aligned_cols=22 Identities=18% Similarity=0.072 Sum_probs=19.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 044772 24 KCVTVRDGAVGKTCLLISYTGN 45 (159)
Q Consensus 24 ki~vvG~~~~GKSsli~~l~~~ 45 (159)
.++++|++|+|||||++.+.+-
T Consensus 32 ~~~iiG~nGsGKSTLl~~l~Gl 53 (224)
T 2pcj_A 32 FVSIIGASGSGKSTLLYILGLL 53 (224)
T ss_dssp EEEEEECTTSCHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999988754
No 256
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=97.12 E-value=0.0003 Score=49.20 Aligned_cols=24 Identities=17% Similarity=0.108 Sum_probs=20.3
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhc
Q 044772 21 KFIKCVTVRDGAVGKTCLLISYTG 44 (159)
Q Consensus 21 ~~~ki~vvG~~~~GKSsli~~l~~ 44 (159)
....++|+|++|+|||||++.|.+
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~~L~~ 51 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAHGVAD 51 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 345799999999999999998864
No 257
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=97.12 E-value=0.00026 Score=47.76 Aligned_cols=21 Identities=5% Similarity=-0.078 Sum_probs=18.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 044772 24 KCVTVRDGAVGKTCLLISYTG 44 (159)
Q Consensus 24 ki~vvG~~~~GKSsli~~l~~ 44 (159)
.|+|+|++||||||+.+.|..
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~ 23 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSK 23 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998863
No 258
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=97.12 E-value=0.00027 Score=48.81 Aligned_cols=21 Identities=14% Similarity=0.151 Sum_probs=18.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 044772 24 KCVTVRDGAVGKTCLLISYTG 44 (159)
Q Consensus 24 ki~vvG~~~~GKSsli~~l~~ 44 (159)
-++++|++|+|||||++.|.+
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 478999999999999999874
No 259
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=97.12 E-value=0.00028 Score=47.57 Aligned_cols=19 Identities=11% Similarity=-0.046 Sum_probs=17.8
Q ss_pred EEEEEcCCCCCHHHHHHHH
Q 044772 24 KCVTVRDGAVGKTCLLISY 42 (159)
Q Consensus 24 ki~vvG~~~~GKSsli~~l 42 (159)
-|+++|++||||||+.+.|
T Consensus 3 ~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 5889999999999999998
No 260
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=97.11 E-value=0.00029 Score=51.05 Aligned_cols=22 Identities=27% Similarity=0.415 Sum_probs=19.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 044772 24 KCVTVRDGAVGKTCLLISYTGN 45 (159)
Q Consensus 24 ki~vvG~~~~GKSsli~~l~~~ 45 (159)
.++++|++|+|||||++.+.+-
T Consensus 26 ~~~liG~nGsGKSTLl~~l~Gl 47 (240)
T 2onk_A 26 YCVLLGPTGAGKSVFLELIAGI 47 (240)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999988764
No 261
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=97.11 E-value=0.00031 Score=48.92 Aligned_cols=24 Identities=17% Similarity=0.105 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCC
Q 044772 23 IKCVTVRDGAVGKTCLLISYTGNT 46 (159)
Q Consensus 23 ~ki~vvG~~~~GKSsli~~l~~~~ 46 (159)
..++++|++||||||+++.|.+..
T Consensus 7 ~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 7 LLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhh
Confidence 468999999999999999987643
No 262
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=97.09 E-value=0.00029 Score=51.70 Aligned_cols=22 Identities=14% Similarity=0.066 Sum_probs=19.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 044772 24 KCVTVRDGAVGKTCLLISYTGN 45 (159)
Q Consensus 24 ki~vvG~~~~GKSsli~~l~~~ 45 (159)
-++++|++|+|||||++.+.+-
T Consensus 34 ~~~liG~nGsGKSTLlk~l~Gl 55 (262)
T 1b0u_A 34 VISIIGSSGSGKSTFLRCINFL 55 (262)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999988754
No 263
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=97.08 E-value=0.00035 Score=50.40 Aligned_cols=22 Identities=14% Similarity=0.231 Sum_probs=20.0
Q ss_pred eeEEEEEcCCCCCHHHHHHHHh
Q 044772 22 FIKCVTVRDGAVGKTCLLISYT 43 (159)
Q Consensus 22 ~~ki~vvG~~~~GKSsli~~l~ 43 (159)
...|+|+|++|||||||++.|.
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La 48 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIA 48 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 3579999999999999999987
No 264
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=97.08 E-value=0.00029 Score=49.23 Aligned_cols=21 Identities=24% Similarity=0.240 Sum_probs=18.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 044772 24 KCVTVRDGAVGKTCLLISYTG 44 (159)
Q Consensus 24 ki~vvG~~~~GKSsli~~l~~ 44 (159)
.++++|++|+|||||++.+.+
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g 23 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASE 23 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHh
Confidence 578999999999999998875
No 265
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=97.08 E-value=0.0003 Score=52.06 Aligned_cols=22 Identities=23% Similarity=0.421 Sum_probs=19.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 044772 24 KCVTVRDGAVGKTCLLISYTGN 45 (159)
Q Consensus 24 ki~vvG~~~~GKSsli~~l~~~ 45 (159)
-++++|++|+|||||++.+.+-
T Consensus 36 ~~~iiGpnGsGKSTLl~~l~Gl 57 (275)
T 3gfo_A 36 VTAILGGNGVGKSTLFQNFNGI 57 (275)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4889999999999999988753
No 266
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=97.07 E-value=0.00031 Score=50.78 Aligned_cols=22 Identities=23% Similarity=0.264 Sum_probs=19.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 044772 24 KCVTVRDGAVGKTCLLISYTGN 45 (159)
Q Consensus 24 ki~vvG~~~~GKSsli~~l~~~ 45 (159)
.++++|++|+|||||++.+.+-
T Consensus 33 ~~~i~G~nGsGKSTLl~~l~Gl 54 (237)
T 2cbz_A 33 LVAVVGQVGCGKSSLLSALLAE 54 (237)
T ss_dssp EEEEECSTTSSHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5889999999999999988754
No 267
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=97.07 E-value=0.00032 Score=49.97 Aligned_cols=22 Identities=23% Similarity=0.179 Sum_probs=19.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 044772 24 KCVTVRDGAVGKTCLLISYTGN 45 (159)
Q Consensus 24 ki~vvG~~~~GKSsli~~l~~~ 45 (159)
.++++|++|+|||||++.+.+-
T Consensus 37 ~~~iiG~NGsGKSTLlk~l~Gl 58 (214)
T 1sgw_A 37 VVNFHGPNGIGKTTLLKTISTY 58 (214)
T ss_dssp CEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999988754
No 268
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=97.05 E-value=0.00035 Score=47.57 Aligned_cols=22 Identities=9% Similarity=0.114 Sum_probs=19.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHhc
Q 044772 23 IKCVTVRDGAVGKTCLLISYTG 44 (159)
Q Consensus 23 ~ki~vvG~~~~GKSsli~~l~~ 44 (159)
.-|+++|.+||||||+.+.|..
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~ 25 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQS 25 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3589999999999999998874
No 269
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=97.05 E-value=0.00033 Score=51.23 Aligned_cols=22 Identities=23% Similarity=0.296 Sum_probs=19.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 044772 24 KCVTVRDGAVGKTCLLISYTGN 45 (159)
Q Consensus 24 ki~vvG~~~~GKSsli~~l~~~ 45 (159)
-++++|++|+|||||++.+.+-
T Consensus 35 ~~~liG~nGsGKSTLlk~l~Gl 56 (257)
T 1g6h_A 35 VTLIIGPNGSGKSTLINVITGF 56 (257)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4889999999999999988754
No 270
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=97.04 E-value=0.00038 Score=50.46 Aligned_cols=22 Identities=9% Similarity=-0.025 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 044772 24 KCVTVRDGAVGKTCLLISYTGN 45 (159)
Q Consensus 24 ki~vvG~~~~GKSsli~~l~~~ 45 (159)
.++++|++|+|||||++.+.+-
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~Gl 51 (243)
T 1mv5_A 30 IIAFAGPSGGGKSTIFSLLERF 51 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999988754
No 271
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=97.04 E-value=0.00034 Score=51.49 Aligned_cols=23 Identities=26% Similarity=0.309 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 044772 24 KCVTVRDGAVGKTCLLISYTGNT 46 (159)
Q Consensus 24 ki~vvG~~~~GKSsli~~l~~~~ 46 (159)
.+.++|++|+|||||++.+.+-.
T Consensus 39 ~~~liG~nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 39 MVAIIGPNGAGKSTLLRLLTGYL 61 (266)
T ss_dssp EEEEECCTTSCHHHHHHHHTSSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCC
Confidence 47899999999999999887643
No 272
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=97.03 E-value=0.00038 Score=50.59 Aligned_cols=22 Identities=18% Similarity=-0.000 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 044772 24 KCVTVRDGAVGKTCLLISYTGN 45 (159)
Q Consensus 24 ki~vvG~~~~GKSsli~~l~~~ 45 (159)
.++++|++|+|||||++.+.+-
T Consensus 37 ~~~i~G~nGsGKSTLl~~l~Gl 58 (247)
T 2ff7_A 37 VIGIVGRSGSGKSTLTKLIQRF 58 (247)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5889999999999999988764
No 273
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=97.03 E-value=0.00035 Score=51.26 Aligned_cols=22 Identities=14% Similarity=0.060 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHhc
Q 044772 23 IKCVTVRDGAVGKTCLLISYTG 44 (159)
Q Consensus 23 ~ki~vvG~~~~GKSsli~~l~~ 44 (159)
-.++++|++|+|||||++.+.+
T Consensus 26 ~~v~i~Gp~GsGKSTll~~l~g 47 (261)
T 2eyu_A 26 GLILVTGPTGSGKSTTIASMID 47 (261)
T ss_dssp EEEEEECSTTCSHHHHHHHHHH
T ss_pred CEEEEECCCCccHHHHHHHHHH
Confidence 3689999999999999998875
No 274
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=97.03 E-value=0.00036 Score=50.10 Aligned_cols=22 Identities=27% Similarity=0.354 Sum_probs=19.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 044772 24 KCVTVRDGAVGKTCLLISYTGN 45 (159)
Q Consensus 24 ki~vvG~~~~GKSsli~~l~~~ 45 (159)
.++++|++|+|||||++.+.+-
T Consensus 36 ~~~i~G~nGsGKSTLl~~l~Gl 57 (229)
T 2pze_A 36 LLAVAGSTGAGKTSLLMMIMGE 57 (229)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5889999999999999988754
No 275
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=97.02 E-value=0.00037 Score=51.23 Aligned_cols=22 Identities=18% Similarity=0.163 Sum_probs=19.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 044772 24 KCVTVRDGAVGKTCLLISYTGN 45 (159)
Q Consensus 24 ki~vvG~~~~GKSsli~~l~~~ 45 (159)
.++++|++|+|||||++.+.+-
T Consensus 52 i~~liG~NGsGKSTLlk~l~Gl 73 (263)
T 2olj_A 52 VVVVIGPSGSGKSTFLRCLNLL 73 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEEcCCCCcHHHHHHHHHcC
Confidence 4789999999999999988754
No 276
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=97.02 E-value=0.00037 Score=50.45 Aligned_cols=22 Identities=23% Similarity=0.255 Sum_probs=19.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 044772 24 KCVTVRDGAVGKTCLLISYTGN 45 (159)
Q Consensus 24 ki~vvG~~~~GKSsli~~l~~~ 45 (159)
.++++|++|+|||||++.+.+-
T Consensus 34 ~~~l~G~nGsGKSTLl~~l~Gl 55 (240)
T 1ji0_A 34 IVTLIGANGAGKTTTLSAIAGL 55 (240)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4889999999999999988754
No 277
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=97.00 E-value=0.00039 Score=50.66 Aligned_cols=22 Identities=27% Similarity=0.280 Sum_probs=19.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 044772 24 KCVTVRDGAVGKTCLLISYTGN 45 (159)
Q Consensus 24 ki~vvG~~~~GKSsli~~l~~~ 45 (159)
.++++|++|+|||||++.+.+-
T Consensus 28 ~~~liG~NGsGKSTLlk~l~Gl 49 (249)
T 2qi9_C 28 ILHLVGPNGAGKSTLLARMAGM 49 (249)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 4789999999999999988754
No 278
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=97.00 E-value=0.00042 Score=50.46 Aligned_cols=22 Identities=18% Similarity=0.193 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 044772 24 KCVTVRDGAVGKTCLLISYTGN 45 (159)
Q Consensus 24 ki~vvG~~~~GKSsli~~l~~~ 45 (159)
.++++|++|+|||||++.+.+-
T Consensus 31 ~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 31 VHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp EEEEECSTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999998874
No 279
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=96.99 E-value=0.00041 Score=48.42 Aligned_cols=23 Identities=13% Similarity=-0.026 Sum_probs=20.0
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhc
Q 044772 22 FIKCVTVRDGAVGKTCLLISYTG 44 (159)
Q Consensus 22 ~~ki~vvG~~~~GKSsli~~l~~ 44 (159)
...|+|+|.+||||||+.+.|..
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~ 40 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAE 40 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999998863
No 280
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=96.99 E-value=0.00045 Score=51.23 Aligned_cols=59 Identities=15% Similarity=0.034 Sum_probs=40.9
Q ss_pred EeCCCcc-cccccccccccCCcEEEEEEeCCChhhHHh--hhhhhHHHHHhhhCCCCCEEEEeeCcccccC
Q 044772 75 WDTAGQE-DYNRLRPLSYRGADVFILAFSLISRPSYEN--ISKKKWVPELRHYAPSVPIVLVGTKLDLRKD 142 (159)
Q Consensus 75 ~D~~g~~-~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~--~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~ 142 (159)
-.+||+. .........+..+|+++.|+|+.++.+... +. .|+ .+.|+++|+||+|+.+.
T Consensus 4 ~w~PGhm~ka~~~~~~~l~~aDvVl~VvDAr~p~~~~~~~l~--~~l-------~~kp~ilVlNK~DL~~~ 65 (282)
T 1puj_A 4 QWFPGHMAKARREVTEKLKLIDIVYELVDARIPMSSRNPMIE--DIL-------KNKPRIMLLNKADKADA 65 (282)
T ss_dssp -----CTTHHHHHHHHHGGGCSEEEEEEETTSTTTTSCHHHH--HHC-------SSSCEEEEEECGGGSCH
T ss_pred cCCchHHHHHHHHHHHHHhhCCEEEEEEeCCCCCccCCHHHH--HHH-------CCCCEEEEEECcccCCH
Confidence 3457774 445556677899999999999999877642 22 333 47899999999999753
No 281
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=96.99 E-value=0.00049 Score=47.99 Aligned_cols=22 Identities=18% Similarity=0.221 Sum_probs=19.5
Q ss_pred eeEEEEEcCCCCCHHHHHHHHh
Q 044772 22 FIKCVTVRDGAVGKTCLLISYT 43 (159)
Q Consensus 22 ~~ki~vvG~~~~GKSsli~~l~ 43 (159)
...|+++|++||||||+...|.
T Consensus 25 ~~~i~l~G~~GsGKsTl~~~La 46 (199)
T 3vaa_A 25 MVRIFLTGYMGAGKTTLGKAFA 46 (199)
T ss_dssp CCEEEEECCTTSCHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHH
Confidence 3479999999999999998886
No 282
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=96.99 E-value=0.00041 Score=50.76 Aligned_cols=22 Identities=18% Similarity=0.031 Sum_probs=19.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 044772 24 KCVTVRDGAVGKTCLLISYTGN 45 (159)
Q Consensus 24 ki~vvG~~~~GKSsli~~l~~~ 45 (159)
.++++|++|+|||||++.+.+-
T Consensus 43 i~~l~G~NGsGKSTLlk~l~Gl 64 (256)
T 1vpl_A 43 IFGLIGPNGAGKTTTLRIISTL 64 (256)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999988764
No 283
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=96.99 E-value=0.00044 Score=50.87 Aligned_cols=22 Identities=18% Similarity=0.262 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 044772 24 KCVTVRDGAVGKTCLLISYTGN 45 (159)
Q Consensus 24 ki~vvG~~~~GKSsli~~l~~~ 45 (159)
.++++|++|+|||||++.+.+-
T Consensus 48 ~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 48 VHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999998874
No 284
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=96.98 E-value=0.0004 Score=50.86 Aligned_cols=22 Identities=18% Similarity=0.211 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 044772 24 KCVTVRDGAVGKTCLLISYTGN 45 (159)
Q Consensus 24 ki~vvG~~~~GKSsli~~l~~~ 45 (159)
.++++|++|+|||||++.+.+-
T Consensus 48 ~~~i~G~nGsGKSTLl~~l~Gl 69 (260)
T 2ghi_A 48 TCALVGHTGSGKSTIAKLLYRF 69 (260)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 5899999999999999988764
No 285
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=96.98 E-value=0.00037 Score=52.06 Aligned_cols=24 Identities=21% Similarity=0.137 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCC
Q 044772 23 IKCVTVRDGAVGKTCLLISYTGNT 46 (159)
Q Consensus 23 ~ki~vvG~~~~GKSsli~~l~~~~ 46 (159)
-.++++|++|+|||||++.|.+..
T Consensus 170 eiv~l~G~sG~GKSTll~~l~g~~ 193 (301)
T 1u0l_A 170 KISTMAGLSGVGKSSLLNAINPGL 193 (301)
T ss_dssp SEEEEECSTTSSHHHHHHHHSTTC
T ss_pred CeEEEECCCCCcHHHHHHHhcccc
Confidence 358899999999999999998654
No 286
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=96.98 E-value=0.00041 Score=51.17 Aligned_cols=22 Identities=14% Similarity=0.065 Sum_probs=19.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 044772 24 KCVTVRDGAVGKTCLLISYTGN 45 (159)
Q Consensus 24 ki~vvG~~~~GKSsli~~l~~~ 45 (159)
.++|+|++|+|||||++.+.+-
T Consensus 47 ~~~i~G~nGsGKSTLlk~l~Gl 68 (271)
T 2ixe_A 47 VTALVGPNGSGKSTVAALLQNL 68 (271)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999988764
No 287
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=96.98 E-value=0.00045 Score=47.63 Aligned_cols=23 Identities=22% Similarity=0.034 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcC
Q 044772 23 IKCVTVRDGAVGKTCLLISYTGN 45 (159)
Q Consensus 23 ~ki~vvG~~~~GKSsli~~l~~~ 45 (159)
.-++++|++|+|||||+++|+..
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~ 29 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPA 29 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHh
Confidence 46889999999999999999853
No 288
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=96.98 E-value=0.00033 Score=49.64 Aligned_cols=22 Identities=18% Similarity=0.170 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 044772 24 KCVTVRDGAVGKTCLLISYTGN 45 (159)
Q Consensus 24 ki~vvG~~~~GKSsli~~l~~~ 45 (159)
.++++|++|+|||||++.+.+-
T Consensus 24 ~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 24 IVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp EEEEECCTTSSTTHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4889999999999999988764
No 289
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=96.97 E-value=0.00047 Score=49.38 Aligned_cols=20 Identities=15% Similarity=0.262 Sum_probs=18.3
Q ss_pred EEEEEcCCCCCHHHHHHHHh
Q 044772 24 KCVTVRDGAVGKTCLLISYT 43 (159)
Q Consensus 24 ki~vvG~~~~GKSsli~~l~ 43 (159)
-++++|++|+|||||++.+.
T Consensus 32 ~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 32 TVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHH
Confidence 58899999999999999877
No 290
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=96.96 E-value=0.00045 Score=48.24 Aligned_cols=24 Identities=17% Similarity=-0.004 Sum_probs=20.1
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhc
Q 044772 21 KFIKCVTVRDGAVGKTCLLISYTG 44 (159)
Q Consensus 21 ~~~ki~vvG~~~~GKSsli~~l~~ 44 (159)
...-|+++|++|+||||+++.|.+
T Consensus 24 ~g~~i~l~G~sGsGKSTl~~~La~ 47 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTLACALNQ 47 (200)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 345789999999999999987764
No 291
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=96.96 E-value=0.00053 Score=47.20 Aligned_cols=23 Identities=22% Similarity=0.117 Sum_probs=19.9
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhc
Q 044772 22 FIKCVTVRDGAVGKTCLLISYTG 44 (159)
Q Consensus 22 ~~ki~vvG~~~~GKSsli~~l~~ 44 (159)
...|+++|.+||||||+.+.|..
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~ 27 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALAT 27 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35689999999999999998863
No 292
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=96.96 E-value=0.0005 Score=48.40 Aligned_cols=20 Identities=15% Similarity=-0.014 Sum_probs=18.5
Q ss_pred EEEEEcCCCCCHHHHHHHHh
Q 044772 24 KCVTVRDGAVGKTCLLISYT 43 (159)
Q Consensus 24 ki~vvG~~~~GKSsli~~l~ 43 (159)
+|+|+|++||||||+.+.|.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~ 21 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQII 21 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 68999999999999999885
No 293
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=96.96 E-value=0.00049 Score=50.96 Aligned_cols=22 Identities=27% Similarity=0.209 Sum_probs=19.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 044772 24 KCVTVRDGAVGKTCLLISYTGN 45 (159)
Q Consensus 24 ki~vvG~~~~GKSsli~~l~~~ 45 (159)
.++++|++|+|||||++.+.+-
T Consensus 49 ~~~liG~NGsGKSTLlk~l~Gl 70 (279)
T 2ihy_A 49 KWILYGLNGAGKTTLLNILNAY 70 (279)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 4889999999999999988754
No 294
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=96.95 E-value=0.00042 Score=48.97 Aligned_cols=23 Identities=17% Similarity=-0.016 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 044772 24 KCVTVRDGAVGKTCLLISYTGNT 46 (159)
Q Consensus 24 ki~vvG~~~~GKSsli~~l~~~~ 46 (159)
-++|+|++|+|||||++.+.+..
T Consensus 27 ~~~l~G~nGsGKSTll~~l~g~~ 49 (231)
T 4a74_A 27 ITEVFGEFGSGKTQLAHTLAVMV 49 (231)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 58899999999999999998643
No 295
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=96.95 E-value=0.00063 Score=46.68 Aligned_cols=23 Identities=9% Similarity=-0.083 Sum_probs=19.8
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhc
Q 044772 22 FIKCVTVRDGAVGKTCLLISYTG 44 (159)
Q Consensus 22 ~~ki~vvG~~~~GKSsli~~l~~ 44 (159)
...|+|+|.+||||||+.+.|..
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~ 28 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999988853
No 296
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=96.95 E-value=0.00064 Score=46.60 Aligned_cols=22 Identities=9% Similarity=-0.050 Sum_probs=19.6
Q ss_pred eeEEEEEcCCCCCHHHHHHHHh
Q 044772 22 FIKCVTVRDGAVGKTCLLISYT 43 (159)
Q Consensus 22 ~~ki~vvG~~~~GKSsli~~l~ 43 (159)
...|+++|.+||||||+.+.|.
T Consensus 4 g~~I~l~G~~GsGKST~~~~La 25 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLA 25 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 3579999999999999999886
No 297
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=96.95 E-value=0.00048 Score=51.70 Aligned_cols=21 Identities=19% Similarity=0.056 Sum_probs=19.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 044772 24 KCVTVRDGAVGKTCLLISYTG 44 (159)
Q Consensus 24 ki~vvG~~~~GKSsli~~l~~ 44 (159)
.++|+|++|+|||||++.|.+
T Consensus 128 ~vaIvGpsGsGKSTLl~lL~g 148 (305)
T 2v9p_A 128 CLAFIGPPNTGKSMLCNSLIH 148 (305)
T ss_dssp EEEEECSSSSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhh
Confidence 689999999999999998874
No 298
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=96.94 E-value=0.0004 Score=47.56 Aligned_cols=23 Identities=26% Similarity=0.101 Sum_probs=20.0
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhc
Q 044772 22 FIKCVTVRDGAVGKTCLLISYTG 44 (159)
Q Consensus 22 ~~ki~vvG~~~~GKSsli~~l~~ 44 (159)
.-.++++|++|+|||+|+..+.+
T Consensus 38 g~~~~l~G~~G~GKTtL~~~i~~ 60 (180)
T 3ec2_A 38 GKGLTFVGSPGVGKTHLAVATLK 60 (180)
T ss_dssp CCEEEECCSSSSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 45689999999999999988864
No 299
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=96.94 E-value=0.00059 Score=46.81 Aligned_cols=21 Identities=19% Similarity=0.170 Sum_probs=18.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 044772 24 KCVTVRDGAVGKTCLLISYTG 44 (159)
Q Consensus 24 ki~vvG~~~~GKSsli~~l~~ 44 (159)
.|+|.|.+||||||+.+.|..
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~ 23 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKE 23 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999988863
No 300
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=96.93 E-value=0.00049 Score=51.48 Aligned_cols=21 Identities=29% Similarity=0.534 Sum_probs=19.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHh
Q 044772 23 IKCVTVRDGAVGKTCLLISYT 43 (159)
Q Consensus 23 ~ki~vvG~~~~GKSsli~~l~ 43 (159)
..++++|++|+|||||++.|.
T Consensus 166 ~i~~l~G~sG~GKSTLln~l~ 186 (302)
T 2yv5_A 166 FICILAGPSGVGKSSILSRLT 186 (302)
T ss_dssp CEEEEECSTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 368999999999999999998
No 301
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=96.93 E-value=0.00015 Score=54.44 Aligned_cols=24 Identities=25% Similarity=0.272 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCC
Q 044772 23 IKCVTVRDGAVGKTCLLISYTGNT 46 (159)
Q Consensus 23 ~ki~vvG~~~~GKSsli~~l~~~~ 46 (159)
-.++++|++|||||||+|.|.+..
T Consensus 174 ~~~~lvG~sG~GKSTLln~L~g~~ 197 (307)
T 1t9h_A 174 KTTVFAGQSGVGKSSLLNAISPEL 197 (307)
T ss_dssp SEEEEEESHHHHHHHHHHHHCC--
T ss_pred CEEEEECCCCCCHHHHHHHhcccc
Confidence 478999999999999999998654
No 302
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=96.93 E-value=0.00048 Score=50.28 Aligned_cols=22 Identities=23% Similarity=0.222 Sum_probs=19.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 044772 24 KCVTVRDGAVGKTCLLISYTGN 45 (159)
Q Consensus 24 ki~vvG~~~~GKSsli~~l~~~ 45 (159)
.++++|++|+|||||++.+.+-
T Consensus 33 ~~~l~G~nGsGKSTLl~~l~Gl 54 (253)
T 2nq2_C 33 ILAVLGQNGCGKSTLLDLLLGI 54 (253)
T ss_dssp EEEEECCSSSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999988754
No 303
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=96.93 E-value=0.00055 Score=48.23 Aligned_cols=21 Identities=14% Similarity=-0.080 Sum_probs=19.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 044772 24 KCVTVRDGAVGKTCLLISYTG 44 (159)
Q Consensus 24 ki~vvG~~~~GKSsli~~l~~ 44 (159)
+|+|+|++||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999998853
No 304
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=96.92 E-value=0.00049 Score=50.57 Aligned_cols=22 Identities=23% Similarity=0.235 Sum_probs=19.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 044772 24 KCVTVRDGAVGKTCLLISYTGN 45 (159)
Q Consensus 24 ki~vvG~~~~GKSsli~~l~~~ 45 (159)
.++++|++|+|||||++.+.+-
T Consensus 35 ~~~liG~nGsGKSTLl~~i~Gl 56 (266)
T 2yz2_A 35 CLLVAGNTGSGKSTLLQIVAGL 56 (266)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 4789999999999999988754
No 305
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=96.92 E-value=0.00058 Score=48.86 Aligned_cols=24 Identities=17% Similarity=0.112 Sum_probs=20.6
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhc
Q 044772 21 KFIKCVTVRDGAVGKTCLLISYTG 44 (159)
Q Consensus 21 ~~~ki~vvG~~~~GKSsli~~l~~ 44 (159)
....|+|+|.+|+||||+.+.|..
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~ 38 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAK 38 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 446899999999999999988863
No 306
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=96.92 E-value=0.00056 Score=46.77 Aligned_cols=22 Identities=23% Similarity=0.169 Sum_probs=19.6
Q ss_pred eeEEEEEcCCCCCHHHHHHHHh
Q 044772 22 FIKCVTVRDGAVGKTCLLISYT 43 (159)
Q Consensus 22 ~~ki~vvG~~~~GKSsli~~l~ 43 (159)
...|+++|.+|+||||+.+.|.
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~ 32 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELA 32 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHH
Confidence 4569999999999999999886
No 307
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=96.92 E-value=0.0003 Score=50.21 Aligned_cols=23 Identities=17% Similarity=0.127 Sum_probs=15.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHh-cC
Q 044772 23 IKCVTVRDGAVGKTCLLISYT-GN 45 (159)
Q Consensus 23 ~ki~vvG~~~~GKSsli~~l~-~~ 45 (159)
--++|+|++|+|||||++.|. +.
T Consensus 28 ~ii~l~Gp~GsGKSTl~~~L~~~~ 51 (231)
T 3lnc_A 28 VILVLSSPSGCGKTTVANKLLEKQ 51 (231)
T ss_dssp CEEEEECSCC----CHHHHHHC--
T ss_pred CEEEEECCCCCCHHHHHHHHHhcC
Confidence 358899999999999999998 53
No 308
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=96.91 E-value=0.00055 Score=47.73 Aligned_cols=22 Identities=9% Similarity=0.068 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHhc
Q 044772 23 IKCVTVRDGAVGKTCLLISYTG 44 (159)
Q Consensus 23 ~ki~vvG~~~~GKSsli~~l~~ 44 (159)
.+|+|+|.+||||||+.+.|.+
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 3699999999999999998875
No 309
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=96.91 E-value=0.0006 Score=46.72 Aligned_cols=21 Identities=14% Similarity=0.014 Sum_probs=19.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHh
Q 044772 23 IKCVTVRDGAVGKTCLLISYT 43 (159)
Q Consensus 23 ~ki~vvG~~~~GKSsli~~l~ 43 (159)
..|+++|++||||||+...|.
T Consensus 6 ~~i~l~G~~GsGKst~a~~La 26 (185)
T 3trf_A 6 TNIYLIGLMGAGKTSVGSQLA 26 (185)
T ss_dssp CEEEEECSTTSSHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 479999999999999999885
No 310
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=96.90 E-value=0.00061 Score=46.73 Aligned_cols=21 Identities=19% Similarity=-0.065 Sum_probs=18.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHh
Q 044772 23 IKCVTVRDGAVGKTCLLISYT 43 (159)
Q Consensus 23 ~ki~vvG~~~~GKSsli~~l~ 43 (159)
..|+|.|++||||||+.+.|.
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~ 24 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAM 24 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 469999999999999998875
No 311
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=96.89 E-value=0.00067 Score=47.01 Aligned_cols=21 Identities=14% Similarity=0.139 Sum_probs=18.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 044772 24 KCVTVRDGAVGKTCLLISYTG 44 (159)
Q Consensus 24 ki~vvG~~~~GKSsli~~l~~ 44 (159)
.|+|+|.+||||||+++.|..
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~ 22 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISK 22 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHH
Confidence 589999999999999988864
No 312
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=96.88 E-value=0.00064 Score=48.09 Aligned_cols=22 Identities=14% Similarity=-0.002 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHhc
Q 044772 23 IKCVTVRDGAVGKTCLLISYTG 44 (159)
Q Consensus 23 ~ki~vvG~~~~GKSsli~~l~~ 44 (159)
..|.++|++||||||+.+.|..
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~ 27 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAE 27 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999988764
No 313
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=96.88 E-value=0.00049 Score=52.68 Aligned_cols=24 Identities=13% Similarity=0.123 Sum_probs=21.2
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcC
Q 044772 22 FIKCVTVRDGAVGKTCLLISYTGN 45 (159)
Q Consensus 22 ~~ki~vvG~~~~GKSsli~~l~~~ 45 (159)
.-+++|+|++|+|||||++.|.+-
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl 193 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAV 193 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHH
T ss_pred hCeEEEECCCCCCHHHHHHHHHHH
Confidence 568999999999999999988754
No 314
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=96.87 E-value=0.00078 Score=48.67 Aligned_cols=24 Identities=8% Similarity=-0.010 Sum_probs=21.2
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhc
Q 044772 21 KFIKCVTVRDGAVGKTCLLISYTG 44 (159)
Q Consensus 21 ~~~ki~vvG~~~~GKSsli~~l~~ 44 (159)
+..+|+|+|++||||||+..+|..
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~ 51 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKK 51 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999998863
No 315
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=96.87 E-value=0.00065 Score=49.89 Aligned_cols=23 Identities=30% Similarity=0.397 Sum_probs=20.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 044772 24 KCVTVRDGAVGKTCLLISYTGNT 46 (159)
Q Consensus 24 ki~vvG~~~~GKSsli~~l~~~~ 46 (159)
.++++|++|+|||||++.+.+-.
T Consensus 32 ~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 32 KVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58899999999999999887654
No 316
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=96.85 E-value=0.00088 Score=46.86 Aligned_cols=24 Identities=17% Similarity=-0.026 Sum_probs=20.9
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcC
Q 044772 22 FIKCVTVRDGAVGKTCLLISYTGN 45 (159)
Q Consensus 22 ~~ki~vvG~~~~GKSsli~~l~~~ 45 (159)
...|.++|++|+||||+++.|...
T Consensus 21 ~~~i~i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 21 TFIIGISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHh
Confidence 457999999999999999998764
No 317
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=96.85 E-value=0.00084 Score=46.10 Aligned_cols=22 Identities=9% Similarity=0.013 Sum_probs=19.3
Q ss_pred eeEEEEEcCCCCCHHHHHHHHh
Q 044772 22 FIKCVTVRDGAVGKTCLLISYT 43 (159)
Q Consensus 22 ~~ki~vvG~~~~GKSsli~~l~ 43 (159)
...|+++|.+||||||+.+.|.
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~ 24 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIV 24 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHH
Confidence 3579999999999999998875
No 318
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=96.84 E-value=0.0008 Score=49.94 Aligned_cols=24 Identities=17% Similarity=-0.007 Sum_probs=20.8
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhc
Q 044772 21 KFIKCVTVRDGAVGKTCLLISYTG 44 (159)
Q Consensus 21 ~~~ki~vvG~~~~GKSsli~~l~~ 44 (159)
...-|++.|++||||||+..+|..
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~ 55 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFE 55 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 346799999999999999999864
No 319
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=96.83 E-value=0.00032 Score=48.24 Aligned_cols=21 Identities=24% Similarity=0.188 Sum_probs=19.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 044772 24 KCVTVRDGAVGKTCLLISYTG 44 (159)
Q Consensus 24 ki~vvG~~~~GKSsli~~l~~ 44 (159)
.+.|+|++|+|||||++.|.+
T Consensus 4 ~v~IvG~SGsGKSTL~~~L~~ 24 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLITRMMP 24 (171)
T ss_dssp EEEEEESCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 688999999999999998875
No 320
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=96.83 E-value=0.00075 Score=47.72 Aligned_cols=23 Identities=17% Similarity=0.124 Sum_probs=20.0
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhc
Q 044772 22 FIKCVTVRDGAVGKTCLLISYTG 44 (159)
Q Consensus 22 ~~ki~vvG~~~~GKSsli~~l~~ 44 (159)
...|+|+|.+||||||+.+.|..
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~ 26 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQE 26 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999988853
No 321
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=96.83 E-value=0.00084 Score=46.79 Aligned_cols=22 Identities=9% Similarity=-0.046 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHhc
Q 044772 23 IKCVTVRDGAVGKTCLLISYTG 44 (159)
Q Consensus 23 ~ki~vvG~~~~GKSsli~~l~~ 44 (159)
..|+|.|.+||||||+.+.|..
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~ 26 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKD 26 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHH
Confidence 5799999999999999998864
No 322
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=96.82 E-value=0.00062 Score=52.21 Aligned_cols=23 Identities=26% Similarity=0.293 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 044772 24 KCVTVRDGAVGKTCLLISYTGNT 46 (159)
Q Consensus 24 ki~vvG~~~~GKSsli~~l~~~~ 46 (159)
-++++|++|+|||||++.+.+-.
T Consensus 32 ~~~llGpsGsGKSTLLr~iaGl~ 54 (359)
T 3fvq_A 32 ILFIIGASGCGKTTLLRCLAGFE 54 (359)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCchHHHHHHHHhcCC
Confidence 37899999999999999887643
No 323
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=96.82 E-value=0.00088 Score=46.78 Aligned_cols=22 Identities=18% Similarity=0.046 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHhc
Q 044772 23 IKCVTVRDGAVGKTCLLISYTG 44 (159)
Q Consensus 23 ~ki~vvG~~~~GKSsli~~l~~ 44 (159)
+.|.++|++||||||+.+.|..
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999875
No 324
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=96.82 E-value=0.00058 Score=48.38 Aligned_cols=22 Identities=18% Similarity=0.009 Sum_probs=19.5
Q ss_pred eeEEEEEcCCCCCHHHHHHHHh
Q 044772 22 FIKCVTVRDGAVGKTCLLISYT 43 (159)
Q Consensus 22 ~~ki~vvG~~~~GKSsli~~l~ 43 (159)
...|+|+|++||||||+.+.|.
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La 26 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIK 26 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 3579999999999999998885
No 325
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=96.82 E-value=0.00082 Score=47.54 Aligned_cols=21 Identities=14% Similarity=-0.009 Sum_probs=18.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 044772 24 KCVTVRDGAVGKTCLLISYTG 44 (159)
Q Consensus 24 ki~vvG~~~~GKSsli~~l~~ 44 (159)
+|+++|+|||||+|...+|..
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~ 22 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAK 22 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999988864
No 326
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=96.82 E-value=0.00071 Score=48.12 Aligned_cols=22 Identities=18% Similarity=0.255 Sum_probs=19.8
Q ss_pred eeEEEEEcCCCCCHHHHHHHHh
Q 044772 22 FIKCVTVRDGAVGKTCLLISYT 43 (159)
Q Consensus 22 ~~ki~vvG~~~~GKSsli~~l~ 43 (159)
...|+|+|.+||||||+.+.|.
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La 28 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRIT 28 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 3679999999999999999886
No 327
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=96.80 E-value=0.00048 Score=51.73 Aligned_cols=22 Identities=18% Similarity=0.107 Sum_probs=19.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 044772 24 KCVTVRDGAVGKTCLLISYTGN 45 (159)
Q Consensus 24 ki~vvG~~~~GKSsli~~l~~~ 45 (159)
.++|+|++|+|||||++.+.+-
T Consensus 82 ~vaivG~sGsGKSTLl~ll~gl 103 (306)
T 3nh6_A 82 TLALVGPSGAGKSTILRLLFRF 103 (306)
T ss_dssp EEEEESSSCHHHHHHHHHHTTS
T ss_pred EEEEECCCCchHHHHHHHHHcC
Confidence 5899999999999999888653
No 328
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=96.80 E-value=0.0007 Score=46.10 Aligned_cols=21 Identities=19% Similarity=0.102 Sum_probs=18.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 044772 24 KCVTVRDGAVGKTCLLISYTG 44 (159)
Q Consensus 24 ki~vvG~~~~GKSsli~~l~~ 44 (159)
+|+|+|++||||||+...|..
T Consensus 6 ~i~i~G~~GsGKsTla~~La~ 26 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAK 26 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 699999999999999988753
No 329
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=96.78 E-value=0.00085 Score=47.45 Aligned_cols=24 Identities=13% Similarity=-0.047 Sum_probs=20.4
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhc
Q 044772 21 KFIKCVTVRDGAVGKTCLLISYTG 44 (159)
Q Consensus 21 ~~~ki~vvG~~~~GKSsli~~l~~ 44 (159)
+...|+|+|.+||||||+.+.|..
T Consensus 4 ~~~~I~l~G~~GsGKsT~a~~La~ 27 (217)
T 3be4_A 4 KKHNLILIGAPGSGKGTQCEFIKK 27 (217)
T ss_dssp GCCEEEEEECTTSSHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 346799999999999999988853
No 330
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=96.78 E-value=0.00077 Score=51.64 Aligned_cols=23 Identities=22% Similarity=0.169 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 044772 24 KCVTVRDGAVGKTCLLISYTGNT 46 (159)
Q Consensus 24 ki~vvG~~~~GKSsli~~l~~~~ 46 (159)
-++++|++|+|||||++.+.+-.
T Consensus 43 ~~~llGpnGsGKSTLLr~iaGl~ 65 (355)
T 1z47_A 43 MVGLLGPSGSGKTTILRLIAGLE 65 (355)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 47899999999999999887643
No 331
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=96.78 E-value=0.001 Score=50.07 Aligned_cols=25 Identities=16% Similarity=-0.043 Sum_probs=21.1
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhc
Q 044772 20 TKFIKCVTVRDGAVGKTCLLISYTG 44 (159)
Q Consensus 20 ~~~~ki~vvG~~~~GKSsli~~l~~ 44 (159)
....-+.|+|++|||||||++.|.+
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~g 112 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQA 112 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCEEEEEECCCCchHHHHHHHHHh
Confidence 3456789999999999999988764
No 332
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=96.78 E-value=0.00074 Score=50.62 Aligned_cols=22 Identities=23% Similarity=0.120 Sum_probs=19.5
Q ss_pred eeEEEEEcCCCCCHHHHHHHHh
Q 044772 22 FIKCVTVRDGAVGKTCLLISYT 43 (159)
Q Consensus 22 ~~ki~vvG~~~~GKSsli~~l~ 43 (159)
.--++++|++||||||+++.+.
T Consensus 102 g~vi~lvG~nGsGKTTll~~La 123 (304)
T 1rj9_A 102 GRVVLVVGVNGVGKTTTIAKLG 123 (304)
T ss_dssp SSEEEEECSTTSSHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHH
Confidence 4578999999999999999886
No 333
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=96.77 E-value=0.00077 Score=50.20 Aligned_cols=22 Identities=27% Similarity=0.354 Sum_probs=19.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 044772 24 KCVTVRDGAVGKTCLLISYTGN 45 (159)
Q Consensus 24 ki~vvG~~~~GKSsli~~l~~~ 45 (159)
.++++|++|+|||||++.+.+-
T Consensus 66 ~~~i~G~NGsGKSTLlk~l~Gl 87 (290)
T 2bbs_A 66 LLAVAGSTGAGKTSLLMMIMGE 87 (290)
T ss_dssp EEEEEESTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhcC
Confidence 4889999999999999988754
No 334
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=96.77 E-value=0.00093 Score=47.76 Aligned_cols=26 Identities=19% Similarity=0.157 Sum_probs=21.7
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcC
Q 044772 20 TKFIKCVTVRDGAVGKTCLLISYTGN 45 (159)
Q Consensus 20 ~~~~ki~vvG~~~~GKSsli~~l~~~ 45 (159)
....-|+|+|++|+||||+++.|.+.
T Consensus 18 ~~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 18 TQPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhc
Confidence 34467899999999999999988754
No 335
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=96.75 E-value=0.00089 Score=47.18 Aligned_cols=21 Identities=10% Similarity=0.020 Sum_probs=18.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 044772 24 KCVTVRDGAVGKTCLLISYTG 44 (159)
Q Consensus 24 ki~vvG~~~~GKSsli~~l~~ 44 (159)
+|+|+|.+||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIME 22 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999988863
No 336
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=96.75 E-value=0.00084 Score=51.56 Aligned_cols=23 Identities=22% Similarity=0.234 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 044772 24 KCVTVRDGAVGKTCLLISYTGNT 46 (159)
Q Consensus 24 ki~vvG~~~~GKSsli~~l~~~~ 46 (159)
-++++|++|+|||||++.+.+-.
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~ 53 (362)
T 2it1_A 31 FMALLGPSGSGKSTLLYTIAGIY 53 (362)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCchHHHHHHHHhcCC
Confidence 47899999999999999887643
No 337
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=96.75 E-value=0.00083 Score=51.54 Aligned_cols=23 Identities=22% Similarity=0.218 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 044772 24 KCVTVRDGAVGKTCLLISYTGNT 46 (159)
Q Consensus 24 ki~vvG~~~~GKSsli~~l~~~~ 46 (159)
-++++|++|+|||||++.+.+-.
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~ 53 (359)
T 2yyz_A 31 FVALLGPSGCGKTTTLLMLAGIY 53 (359)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEEEcCCCchHHHHHHHHHCCC
Confidence 47899999999999999887643
No 338
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=96.74 E-value=0.00085 Score=51.85 Aligned_cols=23 Identities=30% Similarity=0.276 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 044772 24 KCVTVRDGAVGKTCLLISYTGNT 46 (159)
Q Consensus 24 ki~vvG~~~~GKSsli~~l~~~~ 46 (159)
-++++|++|+|||||++.+.+-.
T Consensus 31 ~~~llGpsGsGKSTLLr~iaGl~ 53 (381)
T 3rlf_A 31 FVVFVGPSGCGKSTLLRMIAGLE 53 (381)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEcCCCchHHHHHHHHHcCC
Confidence 37899999999999999887643
No 339
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=96.73 E-value=0.0009 Score=51.46 Aligned_cols=22 Identities=14% Similarity=0.066 Sum_probs=19.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 044772 24 KCVTVRDGAVGKTCLLISYTGN 45 (159)
Q Consensus 24 ki~vvG~~~~GKSsli~~l~~~ 45 (159)
-+.++|++|+|||||++.+.+-
T Consensus 56 i~~IiGpnGaGKSTLlr~i~GL 77 (366)
T 3tui_C 56 IYGVIGASGAGKSTLIRCVNLL 77 (366)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEEcCCCchHHHHHHHHhcC
Confidence 3789999999999999888754
No 340
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=96.72 E-value=0.00089 Score=51.61 Aligned_cols=23 Identities=22% Similarity=0.186 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 044772 24 KCVTVRDGAVGKTCLLISYTGNT 46 (159)
Q Consensus 24 ki~vvG~~~~GKSsli~~l~~~~ 46 (159)
-++++|++|+|||||++.+.+-.
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~ 53 (372)
T 1g29_1 31 FMILLGPSGCGKTTTLRMIAGLE 53 (372)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCcHHHHHHHHHHcCC
Confidence 47899999999999999887643
No 341
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=96.72 E-value=0.00095 Score=45.28 Aligned_cols=22 Identities=23% Similarity=0.286 Sum_probs=19.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhc
Q 044772 23 IKCVTVRDGAVGKTCLLISYTG 44 (159)
Q Consensus 23 ~ki~vvG~~~~GKSsli~~l~~ 44 (159)
..+++.|++|+|||+|++.+..
T Consensus 44 ~~~ll~G~~G~GKT~l~~~~~~ 65 (195)
T 1jbk_A 44 NNPVLIGEPGVGKTAIVEGLAQ 65 (195)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred CceEEECCCCCCHHHHHHHHHH
Confidence 4589999999999999988864
No 342
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=96.72 E-value=0.0011 Score=46.12 Aligned_cols=24 Identities=17% Similarity=-0.071 Sum_probs=20.7
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcC
Q 044772 22 FIKCVTVRDGAVGKTCLLISYTGN 45 (159)
Q Consensus 22 ~~ki~vvG~~~~GKSsli~~l~~~ 45 (159)
...|+|+|.+||||||+++.|...
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~ 27 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMES 27 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHT
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHH
Confidence 356999999999999999988753
No 343
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=96.71 E-value=0.00088 Score=50.14 Aligned_cols=24 Identities=25% Similarity=0.036 Sum_probs=20.2
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhc
Q 044772 21 KFIKCVTVRDGAVGKTCLLISYTG 44 (159)
Q Consensus 21 ~~~ki~vvG~~~~GKSsli~~l~~ 44 (159)
..--++++|++||||||++..+.+
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~Lag 122 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGKLAH 122 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHH
Confidence 345689999999999999998764
No 344
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=96.71 E-value=0.00094 Score=51.48 Aligned_cols=23 Identities=26% Similarity=0.182 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 044772 24 KCVTVRDGAVGKTCLLISYTGNT 46 (159)
Q Consensus 24 ki~vvG~~~~GKSsli~~l~~~~ 46 (159)
-++++|++|+|||||++.+.+-.
T Consensus 39 ~~~llGpnGsGKSTLLr~iaGl~ 61 (372)
T 1v43_A 39 FLVLLGPSGCGKTTTLRMIAGLE 61 (372)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCChHHHHHHHHHcCC
Confidence 47899999999999999887643
No 345
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=96.71 E-value=0.00089 Score=48.58 Aligned_cols=25 Identities=16% Similarity=0.052 Sum_probs=21.2
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhc
Q 044772 20 TKFIKCVTVRDGAVGKTCLLISYTG 44 (159)
Q Consensus 20 ~~~~ki~vvG~~~~GKSsli~~l~~ 44 (159)
.....|+++|++||||||+...|..
T Consensus 30 ~~~~~i~l~G~~GsGKSTla~~L~~ 54 (253)
T 2p5t_B 30 KQPIAILLGGQSGAGKTTIHRIKQK 54 (253)
T ss_dssp SSCEEEEEESCGGGTTHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3456899999999999999998864
No 346
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=96.70 E-value=0.00068 Score=46.27 Aligned_cols=22 Identities=18% Similarity=-0.141 Sum_probs=15.6
Q ss_pred eeEEEEEcCCCCCHHHHHHHHh
Q 044772 22 FIKCVTVRDGAVGKTCLLISYT 43 (159)
Q Consensus 22 ~~ki~vvG~~~~GKSsli~~l~ 43 (159)
...|+|.|.+||||||+.+.|.
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La 26 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLH 26 (183)
T ss_dssp CCEEEEECCC----CHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 3579999999999999999886
No 347
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=96.70 E-value=0.00088 Score=51.34 Aligned_cols=21 Identities=14% Similarity=0.142 Sum_probs=19.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 044772 24 KCVTVRDGAVGKTCLLISYTG 44 (159)
Q Consensus 24 ki~vvG~~~~GKSsli~~l~~ 44 (159)
.++|+|++|+|||||++.+.+
T Consensus 125 ~i~I~GptGSGKTTlL~~l~g 145 (356)
T 3jvv_A 125 LVLVTGPTGSGKSTTLAAMLD 145 (356)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 699999999999999998864
No 348
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=96.69 E-value=0.00097 Score=45.94 Aligned_cols=22 Identities=14% Similarity=-0.087 Sum_probs=19.5
Q ss_pred eeEEEEEcCCCCCHHHHHHHHh
Q 044772 22 FIKCVTVRDGAVGKTCLLISYT 43 (159)
Q Consensus 22 ~~ki~vvG~~~~GKSsli~~l~ 43 (159)
...|+++|.+||||||+.+.|.
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La 30 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIV 30 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHH
Confidence 3579999999999999998885
No 349
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=96.69 E-value=0.001 Score=46.51 Aligned_cols=23 Identities=13% Similarity=-0.132 Sum_probs=20.2
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhc
Q 044772 22 FIKCVTVRDGAVGKTCLLISYTG 44 (159)
Q Consensus 22 ~~ki~vvG~~~~GKSsli~~l~~ 44 (159)
...|+|.|.+||||||+.+.|..
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~ 31 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVE 31 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999998863
No 350
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=96.66 E-value=0.0011 Score=47.97 Aligned_cols=21 Identities=33% Similarity=0.382 Sum_probs=19.2
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 044772 25 CVTVRDGAVGKTCLLISYTGN 45 (159)
Q Consensus 25 i~vvG~~~~GKSsli~~l~~~ 45 (159)
++++|++|+|||+|++.+.+.
T Consensus 52 ~ll~G~~G~GKTtl~~~i~~~ 72 (254)
T 1ixz_A 52 VLLVGPPGVGKTHLARAVAGE 72 (254)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 999999999999999988753
No 351
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=96.66 E-value=0.0013 Score=44.31 Aligned_cols=21 Identities=10% Similarity=-0.035 Sum_probs=18.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 044772 24 KCVTVRDGAVGKTCLLISYTG 44 (159)
Q Consensus 24 ki~vvG~~~~GKSsli~~l~~ 44 (159)
+|++.|.+||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSR 22 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999988864
No 352
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=96.66 E-value=0.0013 Score=47.46 Aligned_cols=24 Identities=13% Similarity=-0.022 Sum_probs=20.5
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhc
Q 044772 21 KFIKCVTVRDGAVGKTCLLISYTG 44 (159)
Q Consensus 21 ~~~ki~vvG~~~~GKSsli~~l~~ 44 (159)
...-|.|+|++|+|||||++.|.+
T Consensus 24 ~g~iigI~G~~GsGKSTl~k~L~~ 47 (245)
T 2jeo_A 24 RPFLIGVSGGTASGKSTVCEKIME 47 (245)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 345699999999999999998865
No 353
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=96.65 E-value=0.00076 Score=45.16 Aligned_cols=23 Identities=17% Similarity=0.205 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcC
Q 044772 23 IKCVTVRDGAVGKTCLLISYTGN 45 (159)
Q Consensus 23 ~ki~vvG~~~~GKSsli~~l~~~ 45 (159)
-.++++|++|+|||+|++.+.+.
T Consensus 37 ~~~~l~G~~G~GKTtL~~~i~~~ 59 (149)
T 2kjq_A 37 QFIYVWGEEGAGKSHLLQAWVAQ 59 (149)
T ss_dssp SEEEEESSSTTTTCHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 46889999999999999988753
No 354
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=96.65 E-value=0.0011 Score=48.27 Aligned_cols=21 Identities=19% Similarity=0.116 Sum_probs=18.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 044772 24 KCVTVRDGAVGKTCLLISYTG 44 (159)
Q Consensus 24 ki~vvG~~~~GKSsli~~l~~ 44 (159)
-|+|+|++|||||||...|..
T Consensus 3 li~I~G~~GSGKSTla~~La~ 23 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQ 23 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 478999999999999998863
No 355
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=96.65 E-value=0.001 Score=48.96 Aligned_cols=21 Identities=19% Similarity=0.180 Sum_probs=19.2
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 044772 25 CVTVRDGAVGKTCLLISYTGN 45 (159)
Q Consensus 25 i~vvG~~~~GKSsli~~l~~~ 45 (159)
++++|++|+|||+|++.+.+.
T Consensus 47 vlL~Gp~GtGKTtLakala~~ 67 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVANE 67 (274)
T ss_dssp EEEESSTTSCHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHH
Confidence 999999999999999998753
No 356
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=96.64 E-value=0.0013 Score=45.53 Aligned_cols=25 Identities=12% Similarity=-0.064 Sum_probs=21.7
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcC
Q 044772 21 KFIKCVTVRDGAVGKTCLLISYTGN 45 (159)
Q Consensus 21 ~~~ki~vvG~~~~GKSsli~~l~~~ 45 (159)
+...|+|+|.+||||||+.+.|...
T Consensus 7 ~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 7 HPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred CceEEEEECCCCCCHHHHHHHHHHC
Confidence 4568999999999999999988754
No 357
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=96.64 E-value=0.0014 Score=45.73 Aligned_cols=23 Identities=13% Similarity=-0.240 Sum_probs=20.0
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhc
Q 044772 22 FIKCVTVRDGAVGKTCLLISYTG 44 (159)
Q Consensus 22 ~~ki~vvG~~~~GKSsli~~l~~ 44 (159)
...|+|.|.+||||||+.+.|..
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~ 32 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVE 32 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHH
Confidence 45799999999999999998863
No 358
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=96.62 E-value=0.00076 Score=51.54 Aligned_cols=23 Identities=26% Similarity=0.213 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 044772 24 KCVTVRDGAVGKTCLLISYTGNT 46 (159)
Q Consensus 24 ki~vvG~~~~GKSsli~~l~~~~ 46 (159)
-++++|++|+|||||++.+.+-.
T Consensus 28 ~~~llGpnGsGKSTLLr~iaGl~ 50 (348)
T 3d31_A 28 YFVILGPTGAGKTLFLELIAGFH 50 (348)
T ss_dssp EEEEECCCTHHHHHHHHHHHTSS
T ss_pred EEEEECCCCccHHHHHHHHHcCC
Confidence 47899999999999999887643
No 359
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=96.62 E-value=0.0018 Score=44.52 Aligned_cols=24 Identities=21% Similarity=0.039 Sum_probs=20.3
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhc
Q 044772 21 KFIKCVTVRDGAVGKTCLLISYTG 44 (159)
Q Consensus 21 ~~~ki~vvG~~~~GKSsli~~l~~ 44 (159)
+...|+++|.+|+||||++..|..
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~ 35 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLAD 35 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHH
Confidence 346799999999999999988753
No 360
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=96.62 E-value=0.0016 Score=48.51 Aligned_cols=24 Identities=13% Similarity=-0.076 Sum_probs=20.4
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHh
Q 044772 20 TKFIKCVTVRDGAVGKTCLLISYT 43 (159)
Q Consensus 20 ~~~~ki~vvG~~~~GKSsli~~l~ 43 (159)
.....|.|+|++|||||||++.|.
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~ 52 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIY 52 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHH
Confidence 356789999999999999998664
No 361
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=96.61 E-value=0.0011 Score=51.09 Aligned_cols=21 Identities=14% Similarity=0.134 Sum_probs=19.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 044772 24 KCVTVRDGAVGKTCLLISYTG 44 (159)
Q Consensus 24 ki~vvG~~~~GKSsli~~l~~ 44 (159)
.++|+|++|+|||||++.+.+
T Consensus 138 ~i~ivG~~GsGKTTll~~l~~ 158 (372)
T 2ewv_A 138 LILVTGPTGSGKSTTIASMID 158 (372)
T ss_dssp EEEEECSSSSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 589999999999999998875
No 362
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=96.61 E-value=0.0013 Score=46.73 Aligned_cols=21 Identities=10% Similarity=-0.067 Sum_probs=18.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 044772 24 KCVTVRDGAVGKTCLLISYTG 44 (159)
Q Consensus 24 ki~vvG~~~~GKSsli~~l~~ 44 (159)
.|+|+|.+||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~ 22 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKD 22 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998863
No 363
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=96.61 E-value=0.0011 Score=50.88 Aligned_cols=22 Identities=23% Similarity=0.270 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 044772 24 KCVTVRDGAVGKTCLLISYTGN 45 (159)
Q Consensus 24 ki~vvG~~~~GKSsli~~l~~~ 45 (159)
.++|+|++|+|||||++.+.+-
T Consensus 177 ~i~ivG~sGsGKSTll~~l~~~ 198 (361)
T 2gza_A 177 VIVVAGETGSGKTTLMKALMQE 198 (361)
T ss_dssp CEEEEESSSSCHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 7999999999999999999864
No 364
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=96.60 E-value=0.0011 Score=45.87 Aligned_cols=23 Identities=9% Similarity=-0.067 Sum_probs=19.9
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhc
Q 044772 22 FIKCVTVRDGAVGKTCLLISYTG 44 (159)
Q Consensus 22 ~~ki~vvG~~~~GKSsli~~l~~ 44 (159)
...|+++|.+||||||+.+.|..
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~ 34 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVE 34 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999988863
No 365
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=96.60 E-value=0.0012 Score=46.51 Aligned_cols=21 Identities=14% Similarity=0.219 Sum_probs=18.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 044772 24 KCVTVRDGAVGKTCLLISYTG 44 (159)
Q Consensus 24 ki~vvG~~~~GKSsli~~l~~ 44 (159)
-++++|++|+|||||+..+..
T Consensus 25 ~~~i~G~~GsGKTtl~~~l~~ 45 (235)
T 2w0m_A 25 FIALTGEPGTGKTIFSLHFIA 45 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 478899999999999998873
No 366
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=96.59 E-value=0.0014 Score=45.03 Aligned_cols=22 Identities=23% Similarity=0.158 Sum_probs=19.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHhc
Q 044772 23 IKCVTVRDGAVGKTCLLISYTG 44 (159)
Q Consensus 23 ~ki~vvG~~~~GKSsli~~l~~ 44 (159)
.-+.++|.+|+|||||+.+|..
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~ 26 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVA 26 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 4588999999999999998874
No 367
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=96.59 E-value=0.0012 Score=51.30 Aligned_cols=22 Identities=18% Similarity=0.228 Sum_probs=19.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 044772 24 KCVTVRDGAVGKTCLLISYTGN 45 (159)
Q Consensus 24 ki~vvG~~~~GKSsli~~l~~~ 45 (159)
.++++|++|+|||||++.+.+-
T Consensus 49 ~~~llGpsGsGKSTLLr~iaGl 70 (390)
T 3gd7_A 49 RVGLLGRTGSGKSTLLSAFLRL 70 (390)
T ss_dssp EEEEEESTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCChHHHHHHHHhCC
Confidence 4899999999999999988753
No 368
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=96.59 E-value=0.0013 Score=44.93 Aligned_cols=21 Identities=14% Similarity=-0.065 Sum_probs=18.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 044772 24 KCVTVRDGAVGKTCLLISYTG 44 (159)
Q Consensus 24 ki~vvG~~~~GKSsli~~l~~ 44 (159)
-.+|+|++|+|||||+..+..
T Consensus 28 ~~~i~G~NGsGKStll~ai~~ 48 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILF 48 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHH
Confidence 468999999999999998753
No 369
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=96.59 E-value=0.00049 Score=48.23 Aligned_cols=21 Identities=19% Similarity=0.186 Sum_probs=18.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 044772 24 KCVTVRDGAVGKTCLLISYTG 44 (159)
Q Consensus 24 ki~vvG~~~~GKSsli~~l~~ 44 (159)
-|+|+|.+||||||+++.|..
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~ 22 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSG 22 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 478999999999999998863
No 370
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=96.58 E-value=0.0011 Score=50.14 Aligned_cols=23 Identities=17% Similarity=0.151 Sum_probs=20.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 044772 24 KCVTVRDGAVGKTCLLISYTGNT 46 (159)
Q Consensus 24 ki~vvG~~~~GKSsli~~l~~~~ 46 (159)
.++++|++|+|||||++.+.+-.
T Consensus 173 ~v~i~G~~GsGKTTll~~l~g~~ 195 (330)
T 2pt7_A 173 NVIVCGGTGSGKTTYIKSIMEFI 195 (330)
T ss_dssp CEEEEESTTSCHHHHHHHGGGGS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 69999999999999999988643
No 371
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=96.58 E-value=0.0015 Score=45.59 Aligned_cols=24 Identities=17% Similarity=-0.069 Sum_probs=20.5
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhc
Q 044772 21 KFIKCVTVRDGAVGKTCLLISYTG 44 (159)
Q Consensus 21 ~~~ki~vvG~~~~GKSsli~~l~~ 44 (159)
...-|.++|++|+|||||++.|.+
T Consensus 21 ~~~~i~i~G~~GsGKstl~~~l~~ 44 (201)
T 1rz3_A 21 GRLVLGIDGLSRSGKTTLANQLSQ 44 (201)
T ss_dssp SSEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 446799999999999999988764
No 372
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=96.57 E-value=0.0016 Score=49.27 Aligned_cols=25 Identities=20% Similarity=0.090 Sum_probs=21.2
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhc
Q 044772 20 TKFIKCVTVRDGAVGKTCLLISYTG 44 (159)
Q Consensus 20 ~~~~ki~vvG~~~~GKSsli~~l~~ 44 (159)
...--++++|++|+||||++..|.+
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag 151 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLAN 151 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3456799999999999999998864
No 373
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=96.56 E-value=0.0016 Score=47.44 Aligned_cols=22 Identities=14% Similarity=0.114 Sum_probs=19.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHhc
Q 044772 23 IKCVTVRDGAVGKTCLLISYTG 44 (159)
Q Consensus 23 ~ki~vvG~~~~GKSsli~~l~~ 44 (159)
..|+++|.+||||||+...|..
T Consensus 5 ~lIvl~G~pGSGKSTla~~La~ 26 (260)
T 3a4m_A 5 MLIILTGLPGVGKSTFSKNLAK 26 (260)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEEcCCCCCHHHHHHHHHH
Confidence 4699999999999999998864
No 374
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=96.56 E-value=0.0014 Score=44.18 Aligned_cols=21 Identities=14% Similarity=0.025 Sum_probs=18.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 044772 24 KCVTVRDGAVGKTCLLISYTG 44 (159)
Q Consensus 24 ki~vvG~~~~GKSsli~~l~~ 44 (159)
.|++.|.+||||||+.+.|..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~ 24 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELAR 24 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999988753
No 375
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=96.55 E-value=0.0018 Score=48.95 Aligned_cols=24 Identities=17% Similarity=-0.094 Sum_probs=20.5
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHh
Q 044772 20 TKFIKCVTVRDGAVGKTCLLISYT 43 (159)
Q Consensus 20 ~~~~ki~vvG~~~~GKSsli~~l~ 43 (159)
...+-|.|+|++|||||||++.|.
T Consensus 90 ~~p~iigI~GpsGSGKSTl~~~L~ 113 (321)
T 3tqc_A 90 KVPYIIGIAGSVAVGKSTTSRVLK 113 (321)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHH
Confidence 345679999999999999998775
No 376
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=96.55 E-value=0.0016 Score=47.25 Aligned_cols=22 Identities=14% Similarity=-0.013 Sum_probs=19.8
Q ss_pred eeEEEEEcCCCCCHHHHHHHHh
Q 044772 22 FIKCVTVRDGAVGKTCLLISYT 43 (159)
Q Consensus 22 ~~ki~vvG~~~~GKSsli~~l~ 43 (159)
...|.|+|++||||||+++.|.
T Consensus 27 g~~I~I~G~~GsGKSTl~k~La 48 (252)
T 4e22_A 27 APVITVDGPSGAGKGTLCKALA 48 (252)
T ss_dssp SCEEEEECCTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 3579999999999999999887
No 377
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=96.53 E-value=0.0015 Score=45.05 Aligned_cols=21 Identities=10% Similarity=-0.094 Sum_probs=18.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 044772 24 KCVTVRDGAVGKTCLLISYTG 44 (159)
Q Consensus 24 ki~vvG~~~~GKSsli~~l~~ 44 (159)
-|++.|.+||||||+++.|..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQ 22 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 488999999999999998864
No 378
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=96.52 E-value=0.0017 Score=48.57 Aligned_cols=24 Identities=17% Similarity=-0.051 Sum_probs=20.6
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhc
Q 044772 21 KFIKCVTVRDGAVGKTCLLISYTG 44 (159)
Q Consensus 21 ~~~ki~vvG~~~~GKSsli~~l~~ 44 (159)
...-|.|+|++|+|||||++.|.+
T Consensus 79 ~g~iigI~G~~GsGKSTl~~~L~~ 102 (308)
T 1sq5_A 79 IPYIISIAGSVAVGKSTTARVLQA 102 (308)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 446799999999999999998865
No 379
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=96.51 E-value=0.0015 Score=50.18 Aligned_cols=24 Identities=25% Similarity=0.036 Sum_probs=20.3
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhc
Q 044772 21 KFIKCVTVRDGAVGKTCLLISYTG 44 (159)
Q Consensus 21 ~~~ki~vvG~~~~GKSsli~~l~~ 44 (159)
..--++++|++||||||++..|.+
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag 179 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAH 179 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHh
Confidence 345689999999999999988764
No 380
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=96.49 E-value=0.0016 Score=44.51 Aligned_cols=21 Identities=24% Similarity=0.132 Sum_probs=18.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 044772 24 KCVTVRDGAVGKTCLLISYTG 44 (159)
Q Consensus 24 ki~vvG~~~~GKSsli~~l~~ 44 (159)
.|+|+|.+||||||+...|..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~ 24 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAK 24 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999988753
No 381
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=96.49 E-value=0.0016 Score=47.81 Aligned_cols=22 Identities=32% Similarity=0.348 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 044772 24 KCVTVRDGAVGKTCLLISYTGN 45 (159)
Q Consensus 24 ki~vvG~~~~GKSsli~~l~~~ 45 (159)
.++++|++|+|||+|++.+.+.
T Consensus 75 gvll~Gp~GtGKTtl~~~i~~~ 96 (278)
T 1iy2_A 75 GVLLVGPPGVGKTHLARAVAGE 96 (278)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCcChHHHHHHHHHHH
Confidence 3899999999999999988753
No 382
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=96.49 E-value=0.0016 Score=44.66 Aligned_cols=21 Identities=14% Similarity=-0.125 Sum_probs=18.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 044772 24 KCVTVRDGAVGKTCLLISYTG 44 (159)
Q Consensus 24 ki~vvG~~~~GKSsli~~l~~ 44 (159)
.|++.|.+||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYE 22 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 488999999999999988864
No 383
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=96.49 E-value=0.00076 Score=51.62 Aligned_cols=23 Identities=17% Similarity=0.219 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 044772 24 KCVTVRDGAVGKTCLLISYTGNT 46 (159)
Q Consensus 24 ki~vvG~~~~GKSsli~~l~~~~ 46 (159)
-++++|++|+|||||++.+.+-.
T Consensus 33 ~~~llGpnGsGKSTLLr~iaGl~ 55 (353)
T 1oxx_K 33 RFGILGPSGAGKTTFMRIIAGLD 55 (353)
T ss_dssp EEEEECSCHHHHHHHHHHHHTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 47899999999999999887643
No 384
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=96.48 E-value=0.002 Score=45.33 Aligned_cols=23 Identities=9% Similarity=0.037 Sum_probs=20.2
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhc
Q 044772 22 FIKCVTVRDGAVGKTCLLISYTG 44 (159)
Q Consensus 22 ~~ki~vvG~~~~GKSsli~~l~~ 44 (159)
...|+|.|.+||||||+++.|..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 36799999999999999998864
No 385
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=96.48 E-value=0.0019 Score=46.70 Aligned_cols=27 Identities=11% Similarity=-0.004 Sum_probs=21.0
Q ss_pred CcceeeEEEEEcCCCCCHHHHHHHHhc
Q 044772 18 TATKFIKCVTVRDGAVGKTCLLISYTG 44 (159)
Q Consensus 18 ~~~~~~ki~vvG~~~~GKSsli~~l~~ 44 (159)
...+.+.|.|.|.+||||||+.+.|..
T Consensus 18 ~~~~~~iI~I~G~~GSGKST~a~~L~~ 44 (252)
T 1uj2_A 18 NGGEPFLIGVSGGTASGKSSVCAKIVQ 44 (252)
T ss_dssp ---CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred cCCCcEEEEEECCCCCCHHHHHHHHHH
Confidence 334567899999999999999988754
No 386
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=96.48 E-value=0.0011 Score=48.68 Aligned_cols=57 Identities=9% Similarity=0.050 Sum_probs=38.2
Q ss_pred CCCccc-ccccccccccCCcEEEEEEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCcccccC
Q 044772 77 TAGQED-YNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKD 142 (159)
Q Consensus 77 ~~g~~~-~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~ 142 (159)
+||+.. ........+.++|.++.|+|+.++.+...... .++ +.|.++|.||+||.+.
T Consensus 4 ~PGhm~ka~~~~~~~l~~~D~vl~VvDar~P~~~~~~~l-~ll--------~k~~iivlNK~DL~~~ 61 (262)
T 3cnl_A 4 YPGHIEKAKRQIKDLLRLVNTVVEVRDARAPFATSAYGV-DFS--------RKETIILLNKVDIADE 61 (262)
T ss_dssp -----CCTTHHHHHHHTTCSEEEEEEETTSTTTTSCTTS-CCT--------TSEEEEEEECGGGSCH
T ss_pred CchHHHHHHHHHHHHHhhCCEEEEEeeCCCCCcCcChHH-Hhc--------CCCcEEEEECccCCCH
Confidence 366642 33355667889999999999998876654321 221 6899999999999753
No 387
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=96.47 E-value=0.0015 Score=51.09 Aligned_cols=22 Identities=14% Similarity=0.060 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 044772 24 KCVTVRDGAVGKTCLLISYTGN 45 (159)
Q Consensus 24 ki~vvG~~~~GKSsli~~l~~~ 45 (159)
-++|+|++|+|||||++.+++.
T Consensus 169 ii~I~GpnGSGKTTlL~allg~ 190 (418)
T 1p9r_A 169 IILVTGPTGSGKSTTLYAGLQE 190 (418)
T ss_dssp EEEEECSTTSCHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHhh
Confidence 4899999999999999998753
No 388
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=96.46 E-value=0.0016 Score=52.03 Aligned_cols=24 Identities=21% Similarity=0.106 Sum_probs=20.1
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhc
Q 044772 21 KFIKCVTVRDGAVGKTCLLISYTG 44 (159)
Q Consensus 21 ~~~ki~vvG~~~~GKSsli~~l~~ 44 (159)
..--++|+|++|+|||||+..|.+
T Consensus 292 ~GeVI~LVGpNGSGKTTLl~~LAg 315 (503)
T 2yhs_A 292 APFVILMVGVNGVGKTTTIGKLAR 315 (503)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCcccHHHHHHHHHH
Confidence 345689999999999999988763
No 389
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=96.46 E-value=0.0016 Score=49.19 Aligned_cols=22 Identities=18% Similarity=0.184 Sum_probs=19.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 044772 24 KCVTVRDGAVGKTCLLISYTGN 45 (159)
Q Consensus 24 ki~vvG~~~~GKSsli~~l~~~ 45 (159)
.++++|++|+|||||++.+.+.
T Consensus 53 ~~ll~Gp~G~GKTTLa~~ia~~ 74 (334)
T 1in4_A 53 HVLLAGPPGLGKTTLAHIIASE 74 (334)
T ss_dssp CEEEESSTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHH
Confidence 4899999999999999988753
No 390
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=96.45 E-value=0.0023 Score=43.69 Aligned_cols=23 Identities=13% Similarity=0.004 Sum_probs=19.8
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhc
Q 044772 22 FIKCVTVRDGAVGKTCLLISYTG 44 (159)
Q Consensus 22 ~~ki~vvG~~~~GKSsli~~l~~ 44 (159)
...|+++|.+|+||||+.+.|..
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~ 27 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEE 27 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 35688999999999999988864
No 391
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=96.45 E-value=0.0014 Score=44.37 Aligned_cols=23 Identities=22% Similarity=0.182 Sum_probs=19.6
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhc
Q 044772 22 FIKCVTVRDGAVGKTCLLISYTG 44 (159)
Q Consensus 22 ~~ki~vvG~~~~GKSsli~~l~~ 44 (159)
...+++.|++|+|||+|+..+..
T Consensus 43 ~~~vll~G~~G~GKT~la~~~~~ 65 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVEGLAI 65 (187)
T ss_dssp SCEEEEESCGGGCHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHH
Confidence 34689999999999999988764
No 392
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=96.43 E-value=0.0016 Score=48.12 Aligned_cols=21 Identities=10% Similarity=0.131 Sum_probs=18.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 044772 24 KCVTVRDGAVGKTCLLISYTG 44 (159)
Q Consensus 24 ki~vvG~~~~GKSsli~~l~~ 44 (159)
-++|+|++|+|||||+..+.+
T Consensus 37 ~~~i~G~~G~GKTTl~~~ia~ 57 (296)
T 1cr0_A 37 VIMVTSGSGMGKSTFVRQQAL 57 (296)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHH
Confidence 478999999999999988764
No 393
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=96.41 E-value=0.0019 Score=45.23 Aligned_cols=21 Identities=24% Similarity=0.014 Sum_probs=19.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 044772 24 KCVTVRDGAVGKTCLLISYTG 44 (159)
Q Consensus 24 ki~vvG~~~~GKSsli~~l~~ 44 (159)
-++++|++|+|||+|+..+..
T Consensus 22 ~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 22 LTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 488999999999999999986
No 394
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=96.40 E-value=0.002 Score=45.85 Aligned_cols=22 Identities=14% Similarity=-0.010 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 044772 24 KCVTVRDGAVGKTCLLISYTGN 45 (159)
Q Consensus 24 ki~vvG~~~~GKSsli~~l~~~ 45 (159)
-++++|++|+|||+|+..+...
T Consensus 26 ~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 26 ITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHH
Confidence 5889999999999999999874
No 395
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=96.39 E-value=0.0015 Score=51.68 Aligned_cols=23 Identities=26% Similarity=0.255 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcC
Q 044772 23 IKCVTVRDGAVGKTCLLISYTGN 45 (159)
Q Consensus 23 ~ki~vvG~~~~GKSsli~~l~~~ 45 (159)
-.++|+|++|+|||||++.|.+-
T Consensus 139 e~v~IvGpnGsGKSTLlr~L~Gl 161 (460)
T 2npi_A 139 PRVVIVGGSQTGKTSLSRTLCSY 161 (460)
T ss_dssp CCEEEEESTTSSHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhCc
Confidence 36999999999999999988754
No 396
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=96.38 E-value=0.0022 Score=45.28 Aligned_cols=23 Identities=13% Similarity=-0.007 Sum_probs=20.1
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhc
Q 044772 22 FIKCVTVRDGAVGKTCLLISYTG 44 (159)
Q Consensus 22 ~~ki~vvG~~~~GKSsli~~l~~ 44 (159)
...+++.|++|+|||+|+..+..
T Consensus 52 ~~~~ll~G~~G~GKT~la~~l~~ 74 (242)
T 3bos_A 52 VQAIYLWGPVKSGRTHLIHAACA 74 (242)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999988864
No 397
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=96.38 E-value=0.0015 Score=47.63 Aligned_cols=25 Identities=20% Similarity=0.149 Sum_probs=20.6
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhc
Q 044772 20 TKFIKCVTVRDGAVGKTCLLISYTG 44 (159)
Q Consensus 20 ~~~~ki~vvG~~~~GKSsli~~l~~ 44 (159)
.+...|+|.|..|+||||+++.|..
T Consensus 22 ~~~~~I~ieG~~GsGKST~~~~L~~ 46 (263)
T 1p5z_B 22 TRIKKISIEGNIAAGKSTFVNILKQ 46 (263)
T ss_dssp -CCEEEEEECSTTSSHHHHHTTTGG
T ss_pred cCceEEEEECCCCCCHHHHHHHHHH
Confidence 3456899999999999999987764
No 398
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=96.37 E-value=0.0025 Score=42.97 Aligned_cols=22 Identities=18% Similarity=0.001 Sum_probs=18.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHhc
Q 044772 23 IKCVTVRDGAVGKTCLLISYTG 44 (159)
Q Consensus 23 ~ki~vvG~~~~GKSsli~~l~~ 44 (159)
-.|+|.|.+||||||+...|..
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~ 29 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGL 29 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999988753
No 399
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=96.36 E-value=0.0024 Score=46.09 Aligned_cols=23 Identities=9% Similarity=0.052 Sum_probs=19.9
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHh
Q 044772 21 KFIKCVTVRDGAVGKTCLLISYT 43 (159)
Q Consensus 21 ~~~ki~vvG~~~~GKSsli~~l~ 43 (159)
..+.|++.|++|+||||+.+.|.
T Consensus 8 ~~~~i~i~G~~GsGKsTla~~la 30 (233)
T 3r20_A 8 GSLVVAVDGPAGTGKSSVSRGLA 30 (233)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 45789999999999999998876
No 400
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=96.35 E-value=0.0025 Score=47.06 Aligned_cols=25 Identities=8% Similarity=-0.007 Sum_probs=21.5
Q ss_pred cceeeEEEEEcCCCCCHHHHHHHHh
Q 044772 19 ATKFIKCVTVRDGAVGKTCLLISYT 43 (159)
Q Consensus 19 ~~~~~ki~vvG~~~~GKSsli~~l~ 43 (159)
+...+.|+|.|.+||||||+.+.|.
T Consensus 72 ~~~~~iI~I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 72 PSGLYVLGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp CTTCEEEEEEECTTSCHHHHHHHHH
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHH
Confidence 3456789999999999999998886
No 401
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=96.34 E-value=0.0026 Score=42.50 Aligned_cols=19 Identities=21% Similarity=0.300 Sum_probs=16.9
Q ss_pred EEEEcCCCCCHHHHHHHHh
Q 044772 25 CVTVRDGAVGKTCLLISYT 43 (159)
Q Consensus 25 i~vvG~~~~GKSsli~~l~ 43 (159)
.+|+|++|+|||+|+..+.
T Consensus 26 ~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 26 NLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 5789999999999998875
No 402
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=96.34 E-value=0.0022 Score=48.96 Aligned_cols=23 Identities=22% Similarity=0.215 Sum_probs=20.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 044772 24 KCVTVRDGAVGKTCLLISYTGNT 46 (159)
Q Consensus 24 ki~vvG~~~~GKSsli~~l~~~~ 46 (159)
++.++|++|+|||||++.+.+..
T Consensus 73 ~~gIiG~nGaGKTTLl~~I~g~~ 95 (347)
T 2obl_A 73 RIGIFAGSGVGKSTLLGMICNGA 95 (347)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 79999999999999999998764
No 403
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=96.33 E-value=0.002 Score=51.67 Aligned_cols=23 Identities=26% Similarity=0.196 Sum_probs=20.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 044772 24 KCVTVRDGAVGKTCLLISYTGNT 46 (159)
Q Consensus 24 ki~vvG~~~~GKSsli~~l~~~~ 46 (159)
.++|+|++|||||||++.+.+--
T Consensus 262 ~i~I~GptGSGKTTlL~aL~~~i 284 (511)
T 2oap_1 262 SAIVVGETASGKTTTLNAIMMFI 284 (511)
T ss_dssp CEEEEESTTSSHHHHHHHHGGGS
T ss_pred EEEEECCCCCCHHHHHHHHHhhC
Confidence 59999999999999999987543
No 404
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=96.33 E-value=0.0015 Score=49.06 Aligned_cols=24 Identities=21% Similarity=0.068 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCC
Q 044772 23 IKCVTVRDGAVGKTCLLISYTGNT 46 (159)
Q Consensus 23 ~ki~vvG~~~~GKSsli~~l~~~~ 46 (159)
--++|+|.+|+|||||++.+.+..
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~~ 28 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNEQ 28 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHSC
T ss_pred cEEEEEecCCCCHHHHHHHHHhhc
Confidence 346789999999999999999653
No 405
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=96.32 E-value=0.0023 Score=46.27 Aligned_cols=22 Identities=27% Similarity=0.270 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHhc
Q 044772 23 IKCVTVRDGAVGKTCLLISYTG 44 (159)
Q Consensus 23 ~ki~vvG~~~~GKSsli~~l~~ 44 (159)
..++++|++|+|||+|++.+.+
T Consensus 46 ~~vll~G~~GtGKT~la~~la~ 67 (257)
T 1lv7_A 46 KGVLMVGPPGTGKTLLAKAIAG 67 (257)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEECcCCCCHHHHHHHHHH
Confidence 3599999999999999998875
No 406
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=96.32 E-value=0.0023 Score=44.93 Aligned_cols=24 Identities=17% Similarity=0.108 Sum_probs=19.9
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhc
Q 044772 21 KFIKCVTVRDGAVGKTCLLISYTG 44 (159)
Q Consensus 21 ~~~ki~vvG~~~~GKSsli~~l~~ 44 (159)
...-|+++|.+|+||||+.+.|..
T Consensus 24 ~~~~i~~~G~~GsGKsT~~~~l~~ 47 (211)
T 1m7g_A 24 RGLTIWLTGLSASGKSTLAVELEH 47 (211)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 345689999999999999988753
No 407
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=96.30 E-value=0.003 Score=46.70 Aligned_cols=22 Identities=14% Similarity=0.116 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHhc
Q 044772 23 IKCVTVRDGAVGKTCLLISYTG 44 (159)
Q Consensus 23 ~ki~vvG~~~~GKSsli~~l~~ 44 (159)
.-|+++|.+||||||+.++|..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4589999999999999998875
No 408
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=96.28 E-value=0.0028 Score=43.99 Aligned_cols=22 Identities=27% Similarity=0.146 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHhc
Q 044772 23 IKCVTVRDGAVGKTCLLISYTG 44 (159)
Q Consensus 23 ~ki~vvG~~~~GKSsli~~l~~ 44 (159)
..+++.|++|+|||+|+..+..
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~ 76 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIAN 76 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999988764
No 409
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=96.28 E-value=0.0022 Score=46.66 Aligned_cols=23 Identities=17% Similarity=-0.152 Sum_probs=19.7
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhc
Q 044772 22 FIKCVTVRDGAVGKTCLLISYTG 44 (159)
Q Consensus 22 ~~ki~vvG~~~~GKSsli~~l~~ 44 (159)
.-.|+++|++|+||||+.+.|..
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~ 70 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMAR 70 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 34799999999999999988753
No 410
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=96.25 E-value=0.0036 Score=44.82 Aligned_cols=24 Identities=13% Similarity=-0.096 Sum_probs=20.7
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhc
Q 044772 21 KFIKCVTVRDGAVGKTCLLISYTG 44 (159)
Q Consensus 21 ~~~ki~vvG~~~~GKSsli~~l~~ 44 (159)
+..-|++.|++|+||||++++|..
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~ 48 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYH 48 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHH
Confidence 456789999999999999988864
No 411
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=96.21 E-value=0.0028 Score=44.45 Aligned_cols=21 Identities=19% Similarity=0.139 Sum_probs=18.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 044772 24 KCVTVRDGAVGKTCLLISYTG 44 (159)
Q Consensus 24 ki~vvG~~~~GKSsli~~l~~ 44 (159)
-+++.|++|+|||+|++.+..
T Consensus 47 ~~ll~G~~G~GKT~l~~~~~~ 67 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIARLLAK 67 (250)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999988863
No 412
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=96.19 E-value=0.003 Score=43.80 Aligned_cols=21 Identities=19% Similarity=0.159 Sum_probs=18.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 044772 24 KCVTVRDGAVGKTCLLISYTG 44 (159)
Q Consensus 24 ki~vvG~~~~GKSsli~~l~~ 44 (159)
.+++.|++|+|||+|+..+..
T Consensus 40 ~~ll~G~~G~GKT~l~~~l~~ 60 (226)
T 2chg_A 40 HLLFSGPPGTGKTATAIALAR 60 (226)
T ss_dssp CEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 399999999999999988864
No 413
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=96.19 E-value=0.0028 Score=49.84 Aligned_cols=23 Identities=26% Similarity=0.219 Sum_probs=20.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 044772 24 KCVTVRDGAVGKTCLLISYTGNT 46 (159)
Q Consensus 24 ki~vvG~~~~GKSsli~~l~~~~ 46 (159)
++.++|++|+|||||++.+.+..
T Consensus 159 ~~~IvG~sGsGKSTLl~~Iag~~ 181 (438)
T 2dpy_A 159 RMGLFAGSGVGKSVLLGMMARYT 181 (438)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhccc
Confidence 68999999999999999888754
No 414
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=96.17 E-value=0.0086 Score=44.90 Aligned_cols=53 Identities=19% Similarity=0.239 Sum_probs=37.6
Q ss_pred cccccccCCcEEEEEEeCCChhh-HHhhhhhhHHHHHhhhCCCCCEEEEeeCcccccC
Q 044772 86 LRPLSYRGADVFILAFSLISRPS-YENISKKKWVPELRHYAPSVPIVLVGTKLDLRKD 142 (159)
Q Consensus 86 ~~~~~~~~~~~~i~v~d~~~~~s-~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~ 142 (159)
+.+..+.++|.+++|+|+.+|.. ...+. +++..... .++|.+||.||+||.+.
T Consensus 79 l~R~~~anvD~v~~V~~~~~p~~~~~~i~--r~L~~~~~--~~~~~vivlnK~DL~~~ 132 (307)
T 1t9h_A 79 LIRPPICNVDQAVLVFSAVQPSFSTALLD--RFLVLVEA--NDIQPIICITKMDLIED 132 (307)
T ss_dssp ETTTTEECCCEEEEEEESTTTTCCHHHHH--HHHHHHHT--TTCEEEEEEECGGGCCC
T ss_pred hhHHHHHhCCEEEEEEeCCCCCCCHHHHH--HHHHHHHH--CCCCEEEEEECCccCch
Confidence 33456789999999999987653 33333 55543332 36899999999999765
No 415
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=96.16 E-value=0.0033 Score=50.74 Aligned_cols=23 Identities=17% Similarity=0.163 Sum_probs=20.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 044772 24 KCVTVRDGAVGKTCLLISYTGNT 46 (159)
Q Consensus 24 ki~vvG~~~~GKSsli~~l~~~~ 46 (159)
.++++|++|+|||||++.+.+-.
T Consensus 49 ~~~LvG~NGaGKSTLlk~l~Gl~ 71 (538)
T 1yqt_A 49 VVGIVGPNGTGKSTAVKILAGQL 71 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999888643
No 416
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=96.15 E-value=0.0029 Score=51.45 Aligned_cols=22 Identities=18% Similarity=0.110 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 044772 24 KCVTVRDGAVGKTCLLISYTGN 45 (159)
Q Consensus 24 ki~vvG~~~~GKSsli~~l~~~ 45 (159)
.++++|++|+|||||++.+.+-
T Consensus 371 ~~~ivG~sGsGKSTLl~~l~g~ 392 (582)
T 3b60_A 371 TVALVGRSGSGKSTIASLITRF 392 (582)
T ss_dssp EEEEEECTTSSHHHHHHHHTTT
T ss_pred EEEEECCCCCCHHHHHHHHhhc
Confidence 5899999999999999988754
No 417
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=96.15 E-value=0.0029 Score=50.34 Aligned_cols=21 Identities=10% Similarity=0.185 Sum_probs=18.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 044772 24 KCVTVRDGAVGKTCLLISYTG 44 (159)
Q Consensus 24 ki~vvG~~~~GKSsli~~l~~ 44 (159)
-++|+|++|+|||||++.+.+
T Consensus 31 ~~~liG~nGsGKSTLl~~l~G 51 (483)
T 3euj_A 31 VTTLSGGNGAGKSTTMAGFVT 51 (483)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHhc
Confidence 578999999999999998864
No 418
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=96.12 E-value=0.0053 Score=47.88 Aligned_cols=24 Identities=17% Similarity=0.011 Sum_probs=20.5
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhc
Q 044772 21 KFIKCVTVRDGAVGKTCLLISYTG 44 (159)
Q Consensus 21 ~~~ki~vvG~~~~GKSsli~~l~~ 44 (159)
...-|+++|.+||||||+.++|..
T Consensus 257 ~~~lIil~G~pGSGKSTla~~L~~ 280 (416)
T 3zvl_A 257 NPEVVVAVGFPGAGKSTFIQEHLV 280 (416)
T ss_dssp SCCEEEEESCTTSSHHHHHHHHTG
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 445688999999999999999874
No 419
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=96.12 E-value=0.003 Score=46.31 Aligned_cols=21 Identities=24% Similarity=0.352 Sum_probs=18.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 044772 24 KCVTVRDGAVGKTCLLISYTG 44 (159)
Q Consensus 24 ki~vvG~~~~GKSsli~~l~~ 44 (159)
-++|+|++|+|||||+..+..
T Consensus 32 i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 32 VGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 588999999999999988874
No 420
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=96.10 E-value=0.0033 Score=51.07 Aligned_cols=23 Identities=17% Similarity=0.147 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 044772 24 KCVTVRDGAVGKTCLLISYTGNT 46 (159)
Q Consensus 24 ki~vvG~~~~GKSsli~~l~~~~ 46 (159)
.++++|++|+|||||++.+.+-.
T Consensus 371 ~~~ivG~sGsGKSTll~~l~g~~ 393 (582)
T 3b5x_A 371 TVALVGRSGSGKSTIANLFTRFY 393 (582)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999887643
No 421
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=96.06 E-value=0.0034 Score=50.68 Aligned_cols=23 Identities=26% Similarity=0.290 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 044772 24 KCVTVRDGAVGKTCLLISYTGNT 46 (159)
Q Consensus 24 ki~vvG~~~~GKSsli~~l~~~~ 46 (159)
-+.++|++|+|||||++.+.+-.
T Consensus 27 i~gLiGpNGaGKSTLlkiL~Gl~ 49 (538)
T 3ozx_A 27 ILGVLGKNGVGKTTVLKILAGEI 49 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCC
Confidence 57899999999999999887643
No 422
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=96.04 E-value=0.0038 Score=47.85 Aligned_cols=19 Identities=21% Similarity=0.298 Sum_probs=17.0
Q ss_pred EEEEcCCCCCHHHHHHHHh
Q 044772 25 CVTVRDGAVGKTCLLISYT 43 (159)
Q Consensus 25 i~vvG~~~~GKSsli~~l~ 43 (159)
.+|+|++|+|||||++.+.
T Consensus 26 ~~i~G~NGaGKTTll~ai~ 44 (365)
T 3qf7_A 26 TVVEGPNGAGKSSLFEAIS 44 (365)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 5689999999999999876
No 423
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=96.04 E-value=0.0043 Score=46.02 Aligned_cols=23 Identities=9% Similarity=-0.226 Sum_probs=19.4
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhc
Q 044772 22 FIKCVTVRDGAVGKTCLLISYTG 44 (159)
Q Consensus 22 ~~ki~vvG~~~~GKSsli~~l~~ 44 (159)
+.-+++.|+||+|||+|++.+..
T Consensus 36 p~~lLl~GppGtGKT~la~aiA~ 58 (293)
T 3t15_A 36 PLILGIWGGKGQGKSFQCELVFR 58 (293)
T ss_dssp CSEEEEEECTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35678889999999999998874
No 424
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=96.03 E-value=0.004 Score=44.82 Aligned_cols=22 Identities=18% Similarity=0.120 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHhc
Q 044772 23 IKCVTVRDGAVGKTCLLISYTG 44 (159)
Q Consensus 23 ~ki~vvG~~~~GKSsli~~l~~ 44 (159)
..+++.|++|+|||+|++.+..
T Consensus 40 ~~vll~G~~GtGKT~la~~la~ 61 (262)
T 2qz4_A 40 KGALLLGPPGCGKTLLAKAVAT 61 (262)
T ss_dssp CEEEEESCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 4589999999999999998865
No 425
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=96.03 E-value=0.0037 Score=46.04 Aligned_cols=23 Identities=17% Similarity=-0.008 Sum_probs=20.4
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhc
Q 044772 22 FIKCVTVRDGAVGKTCLLISYTG 44 (159)
Q Consensus 22 ~~ki~vvG~~~~GKSsli~~l~~ 44 (159)
...+++.|++|+|||+|++.+..
T Consensus 54 ~~~vll~Gp~GtGKT~la~~la~ 76 (297)
T 3b9p_A 54 AKGLLLFGPPGNGKTLLARAVAT 76 (297)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHHH
Confidence 45799999999999999998875
No 426
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=96.02 E-value=0.0038 Score=45.66 Aligned_cols=24 Identities=17% Similarity=0.008 Sum_probs=20.5
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcC
Q 044772 22 FIKCVTVRDGAVGKTCLLISYTGN 45 (159)
Q Consensus 22 ~~ki~vvG~~~~GKSsli~~l~~~ 45 (159)
...+++.|++|+|||+|++.+...
T Consensus 51 ~~~~ll~G~~GtGKT~la~~la~~ 74 (285)
T 3h4m_A 51 PKGILLYGPPGTGKTLLAKAVATE 74 (285)
T ss_dssp CSEEEEESSSSSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHH
Confidence 346999999999999999988753
No 427
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=96.02 E-value=0.0039 Score=44.32 Aligned_cols=21 Identities=14% Similarity=0.082 Sum_probs=17.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 044772 24 KCVTVRDGAVGKTCLLISYTG 44 (159)
Q Consensus 24 ki~vvG~~~~GKSsli~~l~~ 44 (159)
-++++|++|+|||+|+.++..
T Consensus 25 ~~~i~G~~GsGKTtl~~~~~~ 45 (247)
T 2dr3_A 25 VVLLSGGPGTGKTIFSQQFLW 45 (247)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999877753
No 428
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=96.01 E-value=0.0044 Score=40.91 Aligned_cols=25 Identities=8% Similarity=-0.203 Sum_probs=20.9
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCC
Q 044772 22 FIKCVTVRDGAVGKTCLLISYTGNT 46 (159)
Q Consensus 22 ~~ki~vvG~~~~GKSsli~~l~~~~ 46 (159)
...|++.|++|+|||++.+.+....
T Consensus 24 ~~~vll~G~~GtGKt~lA~~i~~~~ 48 (145)
T 3n70_A 24 DIAVWLYGAPGTGRMTGARYLHQFG 48 (145)
T ss_dssp CSCEEEESSTTSSHHHHHHHHHHSS
T ss_pred CCCEEEECCCCCCHHHHHHHHHHhC
Confidence 3469999999999999999887543
No 429
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=95.99 E-value=0.0047 Score=44.14 Aligned_cols=26 Identities=15% Similarity=0.082 Sum_probs=21.2
Q ss_pred cceeeEEEEEcCCCCCHHHHHHHHhc
Q 044772 19 ATKFIKCVTVRDGAVGKTCLLISYTG 44 (159)
Q Consensus 19 ~~~~~ki~vvG~~~~GKSsli~~l~~ 44 (159)
......|.|+|.+|+||||+.+.|..
T Consensus 13 ~~~~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 13 KMKTIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp -CCCCEEEEECSSCSSHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHH
Confidence 34556899999999999999988764
No 430
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=95.99 E-value=0.003 Score=51.48 Aligned_cols=22 Identities=18% Similarity=0.087 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 044772 24 KCVTVRDGAVGKTCLLISYTGN 45 (159)
Q Consensus 24 ki~vvG~~~~GKSsli~~l~~~ 45 (159)
.++++|++|+|||||++.+.+-
T Consensus 372 ~~~ivG~sGsGKSTLl~~l~g~ 393 (595)
T 2yl4_A 372 VTALVGPSGSGKSTVLSLLLRL 393 (595)
T ss_dssp EEEEECCTTSSSTHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999988754
No 431
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=95.98 E-value=0.004 Score=48.04 Aligned_cols=22 Identities=18% Similarity=-0.032 Sum_probs=19.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHhc
Q 044772 23 IKCVTVRDGAVGKTCLLISYTG 44 (159)
Q Consensus 23 ~ki~vvG~~~~GKSsli~~l~~ 44 (159)
-.++++|++|+|||||++.+.+
T Consensus 170 ~~i~l~G~~GsGKSTl~~~l~~ 191 (377)
T 1svm_A 170 RYWLFKGPIDSGKTTLAAALLE 191 (377)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 3689999999999999998874
No 432
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=95.97 E-value=0.0041 Score=50.90 Aligned_cols=23 Identities=22% Similarity=0.238 Sum_probs=20.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 044772 24 KCVTVRDGAVGKTCLLISYTGNT 46 (159)
Q Consensus 24 ki~vvG~~~~GKSsli~~l~~~~ 46 (159)
.+.++|++|+|||||++.+.+-.
T Consensus 105 i~~LvGpNGaGKSTLLkiL~Gll 127 (608)
T 3j16_B 105 VLGLVGTNGIGKSTALKILAGKQ 127 (608)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCChHHHHHHHHhcCC
Confidence 58999999999999999887643
No 433
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=95.97 E-value=0.0045 Score=43.63 Aligned_cols=24 Identities=17% Similarity=0.194 Sum_probs=20.7
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcC
Q 044772 22 FIKCVTVRDGAVGKTCLLISYTGN 45 (159)
Q Consensus 22 ~~ki~vvG~~~~GKSsli~~l~~~ 45 (159)
...|+|+|++|+|||+|...|...
T Consensus 34 g~~ilI~GpsGsGKStLA~~La~~ 57 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELVQR 57 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHHTT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHh
Confidence 346899999999999999999754
No 434
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=95.95 E-value=0.0034 Score=51.21 Aligned_cols=22 Identities=23% Similarity=0.137 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 044772 24 KCVTVRDGAVGKTCLLISYTGN 45 (159)
Q Consensus 24 ki~vvG~~~~GKSsli~~l~~~ 45 (159)
.++++|++|+|||||++.+.+-
T Consensus 383 ~~~ivG~sGsGKSTll~~l~g~ 404 (598)
T 3qf4_B 383 KVALVGPTGSGKTTIVNLLMRF 404 (598)
T ss_dssp EEEEECCTTSSTTHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhcC
Confidence 6899999999999999988753
No 435
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=95.92 E-value=0.0041 Score=47.00 Aligned_cols=23 Identities=13% Similarity=-0.064 Sum_probs=20.0
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhc
Q 044772 22 FIKCVTVRDGAVGKTCLLISYTG 44 (159)
Q Consensus 22 ~~ki~vvG~~~~GKSsli~~l~~ 44 (159)
.-.++|.|++|+|||+|++.+..
T Consensus 45 ~~~vli~G~~G~GKTtl~~~l~~ 67 (386)
T 2qby_A 45 PNNIFIYGLTGTGKTAVVKFVLS 67 (386)
T ss_dssp CCCEEEEECTTSSHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHH
Confidence 34689999999999999998875
No 436
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=95.91 E-value=0.0044 Score=46.30 Aligned_cols=22 Identities=23% Similarity=0.092 Sum_probs=19.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhc
Q 044772 23 IKCVTVRDGAVGKTCLLISYTG 44 (159)
Q Consensus 23 ~ki~vvG~~~~GKSsli~~l~~ 44 (159)
-.+++.|++|+|||+|++.+.+
T Consensus 38 ~~lll~G~~GtGKT~la~~i~~ 59 (324)
T 1l8q_A 38 NPIFIYGSVGTGKTHLLQAAGN 59 (324)
T ss_dssp SSEEEECSSSSSHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHH
Confidence 4589999999999999988864
No 437
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=95.90 E-value=0.0062 Score=44.97 Aligned_cols=23 Identities=13% Similarity=0.180 Sum_probs=19.1
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHh
Q 044772 21 KFIKCVTVRDGAVGKTCLLISYT 43 (159)
Q Consensus 21 ~~~ki~vvG~~~~GKSsli~~l~ 43 (159)
....+++.|++|+|||++++.+.
T Consensus 66 ~~~~vll~G~~GtGKT~la~~la 88 (309)
T 3syl_A 66 PTLHMSFTGNPGTGKTTVALKMA 88 (309)
T ss_dssp CCCEEEEEECTTSSHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHH
Confidence 34579999999999999997554
No 438
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=95.89 E-value=0.0044 Score=46.17 Aligned_cols=22 Identities=23% Similarity=0.116 Sum_probs=19.2
Q ss_pred eeEEEEEcCCCCCHHHHHHHHh
Q 044772 22 FIKCVTVRDGAVGKTCLLISYT 43 (159)
Q Consensus 22 ~~ki~vvG~~~~GKSsli~~l~ 43 (159)
.-.++++|++|+||||++..|.
T Consensus 105 g~vi~lvG~~GsGKTTl~~~LA 126 (296)
T 2px0_A 105 SKYIVLFGSTGAGKTTTLAKLA 126 (296)
T ss_dssp SSEEEEEESTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 4578999999999999998775
No 439
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=95.86 E-value=0.0069 Score=42.24 Aligned_cols=24 Identities=8% Similarity=-0.004 Sum_probs=20.9
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhc
Q 044772 21 KFIKCVTVRDGAVGKTCLLISYTG 44 (159)
Q Consensus 21 ~~~ki~vvG~~~~GKSsli~~l~~ 44 (159)
..+.|.+.|.+||||||+.+.|..
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~ 34 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKN 34 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999988764
No 440
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=95.86 E-value=0.0071 Score=44.02 Aligned_cols=26 Identities=19% Similarity=0.201 Sum_probs=21.7
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcC
Q 044772 20 TKFIKCVTVRDGAVGKTCLLISYTGN 45 (159)
Q Consensus 20 ~~~~ki~vvG~~~~GKSsli~~l~~~ 45 (159)
.....+++.|++|+|||+|+..+...
T Consensus 62 ~~~~~vLl~G~~GtGKT~la~~ia~~ 87 (272)
T 1d2n_A 62 TPLVSVLLEGPPHSGKTALAAKIAEE 87 (272)
T ss_dssp CSEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHH
Confidence 34567999999999999999988753
No 441
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=95.86 E-value=0.0029 Score=51.39 Aligned_cols=21 Identities=19% Similarity=0.099 Sum_probs=18.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 044772 24 KCVTVRDGAVGKTCLLISYTG 44 (159)
Q Consensus 24 ki~vvG~~~~GKSsli~~l~~ 44 (159)
.++++|++|+|||||++.+.+
T Consensus 369 ~~~ivG~sGsGKSTll~~l~g 389 (578)
T 4a82_A 369 TVAFVGMSGGGKSTLINLIPR 389 (578)
T ss_dssp EEEEECSTTSSHHHHHTTTTT
T ss_pred EEEEECCCCChHHHHHHHHhc
Confidence 589999999999999987664
No 442
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=95.85 E-value=0.0049 Score=45.78 Aligned_cols=23 Identities=17% Similarity=0.093 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcC
Q 044772 23 IKCVTVRDGAVGKTCLLISYTGN 45 (159)
Q Consensus 23 ~ki~vvG~~~~GKSsli~~l~~~ 45 (159)
..+++.|++|+|||+|++.+...
T Consensus 50 ~~vLL~Gp~GtGKT~la~ala~~ 72 (301)
T 3cf0_A 50 KGVLFYGPPGCGKTLLAKAIANE 72 (301)
T ss_dssp SEEEEECSSSSSHHHHHHHHHHH
T ss_pred ceEEEECCCCcCHHHHHHHHHHH
Confidence 45899999999999999988753
No 443
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=95.83 E-value=0.0068 Score=45.79 Aligned_cols=22 Identities=23% Similarity=0.187 Sum_probs=19.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHhc
Q 044772 23 IKCVTVRDGAVGKTCLLISYTG 44 (159)
Q Consensus 23 ~ki~vvG~~~~GKSsli~~l~~ 44 (159)
..|+|+|++|||||+|...|..
T Consensus 6 ~~i~i~GptGsGKTtla~~La~ 27 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALAD 27 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999988864
No 444
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=95.82 E-value=0.0053 Score=50.23 Aligned_cols=23 Identities=22% Similarity=0.177 Sum_probs=20.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 044772 24 KCVTVRDGAVGKTCLLISYTGNT 46 (159)
Q Consensus 24 ki~vvG~~~~GKSsli~~l~~~~ 46 (159)
.+.++|++|+|||||++.+.+-.
T Consensus 119 ~~~LiG~NGsGKSTLlkiL~Gll 141 (607)
T 3bk7_A 119 VVGIVGPNGTGKTTAVKILAGQL 141 (607)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCChHHHHHHHHhCCC
Confidence 58999999999999999887643
No 445
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=95.82 E-value=0.0054 Score=45.98 Aligned_cols=23 Identities=17% Similarity=0.005 Sum_probs=19.4
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHh
Q 044772 21 KFIKCVTVRDGAVGKTCLLISYT 43 (159)
Q Consensus 21 ~~~ki~vvG~~~~GKSsli~~l~ 43 (159)
...-++++|++|+||||++..|.
T Consensus 103 ~~~vi~ivG~~GsGKTTl~~~LA 125 (306)
T 1vma_A 103 PPFVIMVVGVNGTGKTTSCGKLA 125 (306)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHH
Confidence 34568899999999999998775
No 446
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=95.81 E-value=0.005 Score=49.68 Aligned_cols=23 Identities=17% Similarity=0.180 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 044772 24 KCVTVRDGAVGKTCLLISYTGNT 46 (159)
Q Consensus 24 ki~vvG~~~~GKSsli~~l~~~~ 46 (159)
.+.++|++|+|||||++.+.+-.
T Consensus 296 i~~i~G~nGsGKSTLl~~l~Gl~ 318 (538)
T 3ozx_A 296 IIGILGPNGIGKTTFARILVGEI 318 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999887643
No 447
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=95.80 E-value=0.0038 Score=50.81 Aligned_cols=22 Identities=14% Similarity=0.123 Sum_probs=19.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 044772 24 KCVTVRDGAVGKTCLLISYTGN 45 (159)
Q Consensus 24 ki~vvG~~~~GKSsli~~l~~~ 45 (159)
.++++|++|+|||||++.+.+-
T Consensus 371 ~~~ivG~sGsGKSTll~~l~g~ 392 (587)
T 3qf4_A 371 LVAVLGETGSGKSTLMNLIPRL 392 (587)
T ss_dssp EEEEECSSSSSHHHHHHTTTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999877643
No 448
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=95.79 E-value=0.0054 Score=46.56 Aligned_cols=22 Identities=18% Similarity=0.104 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 044772 24 KCVTVRDGAVGKTCLLISYTGN 45 (159)
Q Consensus 24 ki~vvG~~~~GKSsli~~l~~~ 45 (159)
.++|.|++|+|||+|++.+...
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~ 67 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWEL 67 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999988754
No 449
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=95.78 E-value=0.0061 Score=49.14 Aligned_cols=23 Identities=22% Similarity=0.234 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 044772 24 KCVTVRDGAVGKTCLLISYTGNT 46 (159)
Q Consensus 24 ki~vvG~~~~GKSsli~~l~~~~ 46 (159)
.+.|+|++|+|||||++.+.+-.
T Consensus 314 ~~~i~G~NGsGKSTLlk~l~Gl~ 336 (538)
T 1yqt_A 314 VIGIVGPNGIGKTTFVKMLAGVE 336 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999998643
No 450
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.78 E-value=0.0044 Score=46.68 Aligned_cols=20 Identities=10% Similarity=0.074 Sum_probs=18.5
Q ss_pred EEEEcCCCCCHHHHHHHHhc
Q 044772 25 CVTVRDGAVGKTCLLISYTG 44 (159)
Q Consensus 25 i~vvG~~~~GKSsli~~l~~ 44 (159)
+++.|++|+||||+++.+.+
T Consensus 39 ~ll~Gp~G~GKTtl~~~la~ 58 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALLE 58 (354)
T ss_dssp EEEECSTTSSHHHHHHTHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 89999999999999988765
No 451
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=95.76 E-value=0.0059 Score=44.93 Aligned_cols=23 Identities=17% Similarity=0.104 Sum_probs=20.0
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhc
Q 044772 22 FIKCVTVRDGAVGKTCLLISYTG 44 (159)
Q Consensus 22 ~~ki~vvG~~~~GKSsli~~l~~ 44 (159)
...+++.|++|+|||++++.+..
T Consensus 50 ~~~vll~G~~GtGKT~la~~la~ 72 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIARRLAK 72 (310)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHH
Confidence 35699999999999999988864
No 452
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=95.74 E-value=0.0069 Score=41.91 Aligned_cols=21 Identities=14% Similarity=0.181 Sum_probs=19.1
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 044772 25 CVTVRDGAVGKTCLLISYTGN 45 (159)
Q Consensus 25 i~vvG~~~~GKSsli~~l~~~ 45 (159)
++|+|.++||||+|..+|...
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~ 22 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD 22 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS
T ss_pred EEEECCCCCcHHHHHHHHHhc
Confidence 689999999999999999854
No 453
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=95.73 E-value=0.0045 Score=43.85 Aligned_cols=21 Identities=19% Similarity=0.186 Sum_probs=18.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 044772 24 KCVTVRDGAVGKTCLLISYTG 44 (159)
Q Consensus 24 ki~vvG~~~~GKSsli~~l~~ 44 (159)
.+++.|+||+|||+++..+..
T Consensus 60 ~ili~GPPGtGKTt~a~ala~ 80 (212)
T 1tue_A 60 CLVFCGPANTGKSYFGMSFIH 80 (212)
T ss_dssp EEEEESCGGGCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999887764
No 454
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=95.73 E-value=0.0069 Score=42.48 Aligned_cols=19 Identities=21% Similarity=0.300 Sum_probs=16.5
Q ss_pred EEEEcCCCCCHHHHHHHHh
Q 044772 25 CVTVRDGAVGKTCLLISYT 43 (159)
Q Consensus 25 i~vvG~~~~GKSsli~~l~ 43 (159)
.+|+|++|+|||||+..+.
T Consensus 26 ~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 26 NLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHH
Confidence 5788999999999998764
No 455
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=95.72 E-value=0.006 Score=49.92 Aligned_cols=23 Identities=22% Similarity=0.234 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 044772 24 KCVTVRDGAVGKTCLLISYTGNT 46 (159)
Q Consensus 24 ki~vvG~~~~GKSsli~~l~~~~ 46 (159)
.+.|+|++|+|||||++.+.+-.
T Consensus 384 i~~i~G~NGsGKSTLlk~l~Gl~ 406 (607)
T 3bk7_A 384 VIGIVGPNGIGKTTFVKMLAGVE 406 (607)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999988643
No 456
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=95.72 E-value=0.0055 Score=46.68 Aligned_cols=23 Identities=17% Similarity=-0.016 Sum_probs=20.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 044772 24 KCVTVRDGAVGKTCLLISYTGNT 46 (159)
Q Consensus 24 ki~vvG~~~~GKSsli~~l~~~~ 46 (159)
-+.|+|++|+|||+|+..+....
T Consensus 133 i~~I~G~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 133 ITEVFGEFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58899999999999999998653
No 457
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=95.72 E-value=0.0065 Score=42.10 Aligned_cols=21 Identities=14% Similarity=0.064 Sum_probs=18.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 044772 24 KCVTVRDGAVGKTCLLISYTG 44 (159)
Q Consensus 24 ki~vvG~~~~GKSsli~~l~~ 44 (159)
.|.|.|.+||||||+.+.|..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~ 24 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAA 24 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 688999999999999988754
No 458
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=95.68 E-value=0.0072 Score=47.03 Aligned_cols=25 Identities=12% Similarity=0.185 Sum_probs=21.6
Q ss_pred cceeeEEEEEcCCCCCHHHHHHHHh
Q 044772 19 ATKFIKCVTVRDGAVGKTCLLISYT 43 (159)
Q Consensus 19 ~~~~~ki~vvG~~~~GKSsli~~l~ 43 (159)
..+.+|++++|...||||||+.++.
T Consensus 37 ~~~~~klLLLG~geSGKSTi~KQmk 61 (402)
T 1azs_C 37 YRATHRLLLLGAGESGKSTIVKQMR 61 (402)
T ss_dssp CTTEEEEEEEESTTSSHHHHHHHHH
T ss_pred hhccceEEEecCCCCchhhHHHHHH
Confidence 3568999999999999999998664
No 459
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=95.64 E-value=0.0068 Score=44.76 Aligned_cols=22 Identities=23% Similarity=0.152 Sum_probs=19.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhc
Q 044772 23 IKCVTVRDGAVGKTCLLISYTG 44 (159)
Q Consensus 23 ~ki~vvG~~~~GKSsli~~l~~ 44 (159)
-.++++|++|+|||+++..+..
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~ 69 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAA 69 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 3699999999999999988764
No 460
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.64 E-value=0.0066 Score=45.75 Aligned_cols=22 Identities=14% Similarity=0.205 Sum_probs=19.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 044772 24 KCVTVRDGAVGKTCLLISYTGN 45 (159)
Q Consensus 24 ki~vvG~~~~GKSsli~~l~~~ 45 (159)
.+++.|++|+|||+++..+.+.
T Consensus 48 ~~ll~Gp~G~GKTtla~~la~~ 69 (340)
T 1sxj_C 48 HLLFYGPPGTGKTSTIVALARE 69 (340)
T ss_dssp CEEEECSSSSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 3899999999999999988754
No 461
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=95.62 E-value=0.0097 Score=45.23 Aligned_cols=22 Identities=23% Similarity=0.194 Sum_probs=19.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHhc
Q 044772 23 IKCVTVRDGAVGKTCLLISYTG 44 (159)
Q Consensus 23 ~ki~vvG~~~~GKSsli~~l~~ 44 (159)
.-|+|+|++|||||+|...|..
T Consensus 41 ~lIvI~GPTgsGKTtLa~~LA~ 62 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRLSIDLAA 62 (339)
T ss_dssp EEEEEECSTTSSHHHHHHHHHT
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999998874
No 462
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=95.62 E-value=0.0097 Score=44.73 Aligned_cols=22 Identities=27% Similarity=0.212 Sum_probs=19.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHhc
Q 044772 23 IKCVTVRDGAVGKTCLLISYTG 44 (159)
Q Consensus 23 ~ki~vvG~~~~GKSsli~~l~~ 44 (159)
.-|+|+|++|||||+|...|..
T Consensus 11 ~~i~i~GptgsGKt~la~~La~ 32 (316)
T 3foz_A 11 KAIFLMGPTASGKTALAIELRK 32 (316)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEECCCccCHHHHHHHHHH
Confidence 4578899999999999998864
No 463
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=95.61 E-value=0.0074 Score=45.91 Aligned_cols=22 Identities=36% Similarity=0.250 Sum_probs=19.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhc
Q 044772 23 IKCVTVRDGAVGKTCLLISYTG 44 (159)
Q Consensus 23 ~ki~vvG~~~~GKSsli~~l~~ 44 (159)
.-|+|+|++|||||||..+|..
T Consensus 8 ~lI~I~GptgSGKTtla~~La~ 29 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAK 29 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEECCCcCcHHHHHHHHHH
Confidence 4688999999999999988864
No 464
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=95.60 E-value=0.0072 Score=45.06 Aligned_cols=23 Identities=22% Similarity=0.252 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcC
Q 044772 23 IKCVTVRDGAVGKTCLLISYTGN 45 (159)
Q Consensus 23 ~ki~vvG~~~~GKSsli~~l~~~ 45 (159)
--++|.|++|+|||+|++.+...
T Consensus 32 ~~v~i~G~~G~GKT~Ll~~~~~~ 54 (350)
T 2qen_A 32 PLTLLLGIRRVGKSSLLRAFLNE 54 (350)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCcCCHHHHHHHHHHH
Confidence 35889999999999999998754
No 465
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=95.59 E-value=0.0078 Score=45.35 Aligned_cols=21 Identities=29% Similarity=0.178 Sum_probs=18.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 044772 24 KCVTVRDGAVGKTCLLISYTG 44 (159)
Q Consensus 24 ki~vvG~~~~GKSsli~~l~~ 44 (159)
-|+|+|++|||||+|...|..
T Consensus 5 ~i~i~GptgsGKt~la~~La~ 25 (322)
T 3exa_A 5 LVAIVGPTAVGKTKTSVMLAK 25 (322)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCcCCHHHHHHHHHH
Confidence 478899999999999999874
No 466
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=95.57 E-value=0.0062 Score=46.07 Aligned_cols=23 Identities=13% Similarity=-0.070 Sum_probs=20.1
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhc
Q 044772 22 FIKCVTVRDGAVGKTCLLISYTG 44 (159)
Q Consensus 22 ~~ki~vvG~~~~GKSsli~~l~~ 44 (159)
.-.+++.|++|+|||+|++.+..
T Consensus 44 ~~~vll~G~~G~GKT~l~~~~~~ 66 (387)
T 2v1u_A 44 PSNALLYGLTGTGKTAVARLVLR 66 (387)
T ss_dssp CCCEEECBCTTSSHHHHHHHHHH
T ss_pred CCcEEEECCCCCCHHHHHHHHHH
Confidence 44699999999999999998874
No 467
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=95.57 E-value=0.0099 Score=45.51 Aligned_cols=23 Identities=13% Similarity=0.104 Sum_probs=19.3
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHh
Q 044772 21 KFIKCVTVRDGAVGKTCLLISYT 43 (159)
Q Consensus 21 ~~~ki~vvG~~~~GKSsli~~l~ 43 (159)
...+|+++|++|+||||+...|.
T Consensus 23 ~~~~i~l~G~~G~GKTTl~~~la 45 (359)
T 2ga8_A 23 YRVCVILVGSPGSGKSTIAEELC 45 (359)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHH
T ss_pred CeeEEEEECCCCCcHHHHHHHHH
Confidence 34579999999999999997654
No 468
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=95.57 E-value=0.0075 Score=49.38 Aligned_cols=22 Identities=27% Similarity=0.388 Sum_probs=19.5
Q ss_pred EEEEcCCCCCHHHHHHHHhcCC
Q 044772 25 CVTVRDGAVGKTCLLISYTGNT 46 (159)
Q Consensus 25 i~vvG~~~~GKSsli~~l~~~~ 46 (159)
+.++|++|+|||||++.+.+-.
T Consensus 381 v~iiG~NGsGKSTLlk~l~Gl~ 402 (608)
T 3j16_B 381 LVMMGENGTGKTTLIKLLAGAL 402 (608)
T ss_dssp EEEESCTTSSHHHHHHHHHTSS
T ss_pred EEEECCCCCcHHHHHHHHhcCC
Confidence 6899999999999999887644
No 469
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=95.52 E-value=0.0077 Score=45.26 Aligned_cols=23 Identities=13% Similarity=0.076 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcC
Q 044772 23 IKCVTVRDGAVGKTCLLISYTGN 45 (159)
Q Consensus 23 ~ki~vvG~~~~GKSsli~~l~~~ 45 (159)
..+++.|++|+|||+|++.+...
T Consensus 46 ~~iLL~GppGtGKT~la~ala~~ 68 (322)
T 1xwi_A 46 RGILLFGPPGTGKSYLAKAVATE 68 (322)
T ss_dssp SEEEEESSSSSCHHHHHHHHHHH
T ss_pred ceEEEECCCCccHHHHHHHHHHH
Confidence 57999999999999999988753
No 470
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.51 E-value=0.0079 Score=45.11 Aligned_cols=22 Identities=18% Similarity=0.237 Sum_probs=19.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 044772 24 KCVTVRDGAVGKTCLLISYTGN 45 (159)
Q Consensus 24 ki~vvG~~~~GKSsli~~l~~~ 45 (159)
.+++.|++|+|||++++.+...
T Consensus 60 ~~ll~G~~G~GKT~la~~la~~ 81 (353)
T 1sxj_D 60 HMLFYGPPGTGKTSTILALTKE 81 (353)
T ss_dssp CEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 3999999999999999888643
No 471
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=95.51 E-value=0.0074 Score=45.08 Aligned_cols=22 Identities=9% Similarity=0.066 Sum_probs=19.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 044772 24 KCVTVRDGAVGKTCLLISYTGN 45 (159)
Q Consensus 24 ki~vvG~~~~GKSsli~~l~~~ 45 (159)
-++|.|++|+|||+|++.+...
T Consensus 32 ~v~i~G~~G~GKT~L~~~~~~~ 53 (357)
T 2fna_A 32 ITLVLGLRRTGKSSIIKIGINE 53 (357)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHHh
Confidence 5889999999999999988753
No 472
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=95.49 E-value=0.01 Score=42.42 Aligned_cols=22 Identities=23% Similarity=0.147 Sum_probs=19.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHhc
Q 044772 23 IKCVTVRDGAVGKTCLLISYTG 44 (159)
Q Consensus 23 ~ki~vvG~~~~GKSsli~~l~~ 44 (159)
.-|++.|..|+||||+++.|..
T Consensus 3 ~~i~~~G~~g~GKtt~~~~l~~ 24 (241)
T 2ocp_A 3 RRLSIEGNIAVGKSTFVKLLTK 24 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHH
Confidence 4689999999999999998864
No 473
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=95.49 E-value=0.0092 Score=51.35 Aligned_cols=24 Identities=13% Similarity=0.205 Sum_probs=21.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCC
Q 044772 24 KCVTVRDGAVGKTCLLISYTGNTF 47 (159)
Q Consensus 24 ki~vvG~~~~GKSsli~~l~~~~~ 47 (159)
.+.++|++|+|||||++.+.++.+
T Consensus 463 ~v~LiGpNGsGKSTLLk~LagG~i 486 (986)
T 2iw3_A 463 RYGICGPNGCGKSTLMRAIANGQV 486 (986)
T ss_dssp EEEEECSTTSSHHHHHHHHHHTCS
T ss_pred EEEEECCCCCCHHHHHHHHhCCCc
Confidence 489999999999999999987654
No 474
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=95.47 E-value=0.0092 Score=41.15 Aligned_cols=23 Identities=13% Similarity=0.313 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcC
Q 044772 23 IKCVTVRDGAVGKTCLLISYTGN 45 (159)
Q Consensus 23 ~ki~vvG~~~~GKSsli~~l~~~ 45 (159)
.-+++.|++|+|||++...|+..
T Consensus 17 ~gvli~G~SGaGKStlal~L~~r 39 (181)
T 3tqf_A 17 MGVLITGEANIGKSELSLALIDR 39 (181)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHT
T ss_pred EEEEEEcCCCCCHHHHHHHHHHc
Confidence 46899999999999999988853
No 475
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=95.46 E-value=0.0078 Score=48.27 Aligned_cols=19 Identities=21% Similarity=0.333 Sum_probs=0.0
Q ss_pred EEEEcCCCCCHHHHHHHHh
Q 044772 25 CVTVRDGAVGKTCLLISYT 43 (159)
Q Consensus 25 i~vvG~~~~GKSsli~~l~ 43 (159)
++|+|++|+|||||++.|+
T Consensus 42 ~~l~G~nGsGKSTL~~~~l 60 (525)
T 1tf7_A 42 TLVSGTSGTGKTLFSIQFL 60 (525)
T ss_dssp EEEEESTTSSHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHH
No 476
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=95.45 E-value=0.0092 Score=44.69 Aligned_cols=23 Identities=13% Similarity=0.023 Sum_probs=20.2
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhc
Q 044772 22 FIKCVTVRDGAVGKTCLLISYTG 44 (159)
Q Consensus 22 ~~ki~vvG~~~~GKSsli~~l~~ 44 (159)
...+++.|++|+|||+|++.+..
T Consensus 51 ~~~vLl~GppGtGKT~la~aia~ 73 (322)
T 3eie_A 51 TSGILLYGPPGTGKSYLAKAVAT 73 (322)
T ss_dssp CCEEEEECSSSSCHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHH
Confidence 34799999999999999998864
No 477
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=95.45 E-value=0.008 Score=47.56 Aligned_cols=22 Identities=23% Similarity=0.241 Sum_probs=19.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHhc
Q 044772 23 IKCVTVRDGAVGKTCLLISYTG 44 (159)
Q Consensus 23 ~ki~vvG~~~~GKSsli~~l~~ 44 (159)
-+++++|++|+|||++++.+..
T Consensus 202 ~~~LL~G~pG~GKT~la~~la~ 223 (468)
T 3pxg_A 202 NNPVLIGEPGVGKTAIAEGLAQ 223 (468)
T ss_dssp CEEEEESCTTTTTHHHHHHHHH
T ss_pred CCeEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999987753
No 478
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=95.45 E-value=0.0046 Score=40.75 Aligned_cols=22 Identities=0% Similarity=-0.109 Sum_probs=18.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHhc
Q 044772 23 IKCVTVRDGAVGKTCLLISYTG 44 (159)
Q Consensus 23 ~ki~vvG~~~~GKSsli~~l~~ 44 (159)
..|++.|++|+|||++.+.+..
T Consensus 28 ~~vll~G~~GtGKt~lA~~i~~ 49 (143)
T 3co5_A 28 SPVFLTGEAGSPFETVARYFHK 49 (143)
T ss_dssp SCEEEEEETTCCHHHHHGGGCC
T ss_pred CcEEEECCCCccHHHHHHHHHH
Confidence 4699999999999999877653
No 479
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=95.41 E-value=0.0086 Score=46.54 Aligned_cols=20 Identities=15% Similarity=0.027 Sum_probs=18.1
Q ss_pred EEEEEcCCCCCHHHHHHHHh
Q 044772 24 KCVTVRDGAVGKTCLLISYT 43 (159)
Q Consensus 24 ki~vvG~~~~GKSsli~~l~ 43 (159)
-++|+|++|+|||+|+..|.
T Consensus 180 i~~I~G~sGsGKTTLl~~la 199 (400)
T 3lda_A 180 ITELFGEFRTGKSQLCHTLA 199 (400)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred EEEEEcCCCCChHHHHHHHH
Confidence 48899999999999999876
No 480
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=95.41 E-value=0.01 Score=44.40 Aligned_cols=23 Identities=22% Similarity=0.163 Sum_probs=20.0
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhc
Q 044772 22 FIKCVTVRDGAVGKTCLLISYTG 44 (159)
Q Consensus 22 ~~ki~vvG~~~~GKSsli~~l~~ 44 (159)
...+++.|++|+|||.|+..+..
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~ 174 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAH 174 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHH
Confidence 46799999999999999987764
No 481
>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*
Probab=95.41 E-value=0.032 Score=44.07 Aligned_cols=23 Identities=13% Similarity=0.053 Sum_probs=18.8
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHh
Q 044772 21 KFIKCVTVRDGAVGKTCLLISYT 43 (159)
Q Consensus 21 ~~~ki~vvG~~~~GKSsli~~l~ 43 (159)
...=|.|+|+.++|||+|+|.|+
T Consensus 66 ~v~vvsv~G~~~~gks~l~N~ll 88 (457)
T 4ido_A 66 EVVAVSVAGAFRKGKSFLMDFML 88 (457)
T ss_dssp BEEEEEEEEBTTSSHHHHHHHHH
T ss_pred ceEEEEEECCCCCchhHHHHHHH
Confidence 44556799999999999999554
No 482
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=95.40 E-value=0.0084 Score=45.37 Aligned_cols=22 Identities=14% Similarity=0.214 Sum_probs=19.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHhc
Q 044772 23 IKCVTVRDGAVGKTCLLISYTG 44 (159)
Q Consensus 23 ~ki~vvG~~~~GKSsli~~l~~ 44 (159)
-.+++.|++|+|||+|+..+..
T Consensus 71 ~~vLl~GppGtGKT~la~~la~ 92 (368)
T 3uk6_A 71 RAVLIAGQPGTGKTAIAMGMAQ 92 (368)
T ss_dssp CEEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3699999999999999998864
No 483
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=95.37 E-value=0.0094 Score=41.80 Aligned_cols=22 Identities=18% Similarity=0.167 Sum_probs=19.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhc
Q 044772 23 IKCVTVRDGAVGKTCLLISYTG 44 (159)
Q Consensus 23 ~ki~vvG~~~~GKSsli~~l~~ 44 (159)
..|+++|.+|+||||+...|..
T Consensus 4 ~~i~i~G~~gsGkst~~~~l~~ 25 (219)
T 2h92_A 4 INIALDGPAAAGKSTIAKRVAS 25 (219)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5699999999999999987754
No 484
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=95.36 E-value=0.0041 Score=45.08 Aligned_cols=21 Identities=29% Similarity=0.298 Sum_probs=18.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 044772 24 KCVTVRDGAVGKTCLLISYTG 44 (159)
Q Consensus 24 ki~vvG~~~~GKSsli~~l~~ 44 (159)
.+++.|++|+|||+|++.+..
T Consensus 46 ~vll~G~~GtGKT~la~~la~ 66 (268)
T 2r62_A 46 GVLLVGPPGTGKTLLAKAVAG 66 (268)
T ss_dssp CCCCBCSSCSSHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHH
Confidence 488999999999999998864
No 485
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=95.35 E-value=0.0091 Score=45.30 Aligned_cols=22 Identities=14% Similarity=-0.001 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHhc
Q 044772 23 IKCVTVRDGAVGKTCLLISYTG 44 (159)
Q Consensus 23 ~ki~vvG~~~~GKSsli~~l~~ 44 (159)
-.+++.|++|+|||+|++.+..
T Consensus 46 ~~vll~G~~G~GKT~la~~l~~ 67 (384)
T 2qby_B 46 FSNLFLGLTGTGKTFVSKYIFN 67 (384)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHHH
Confidence 3699999999999999988875
No 486
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.34 E-value=0.011 Score=46.43 Aligned_cols=23 Identities=17% Similarity=0.056 Sum_probs=20.5
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhc
Q 044772 22 FIKCVTVRDGAVGKTCLLISYTG 44 (159)
Q Consensus 22 ~~ki~vvG~~~~GKSsli~~l~~ 44 (159)
+..|++.||||+|||+|+..+.+
T Consensus 215 prGvLLyGPPGTGKTllAkAiA~ 237 (434)
T 4b4t_M 215 PKGALMYGPPGTGKTLLARACAA 237 (434)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHH
T ss_pred CCeeEEECcCCCCHHHHHHHHHH
Confidence 45799999999999999998875
No 487
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=95.34 E-value=0.022 Score=42.42 Aligned_cols=21 Identities=14% Similarity=0.154 Sum_probs=16.3
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 044772 25 CVTVRDGAVGKTCLLISYTGN 45 (159)
Q Consensus 25 i~vvG~~~~GKSsli~~l~~~ 45 (159)
+++-|++|+|||++++.+...
T Consensus 51 ~L~~G~~G~GKT~la~~la~~ 71 (324)
T 3u61_B 51 ILHSPSPGTGKTTVAKALCHD 71 (324)
T ss_dssp EEECSSTTSSHHHHHHHHHHH
T ss_pred EEeeCcCCCCHHHHHHHHHHH
Confidence 344466999999999998643
No 488
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=95.34 E-value=0.0068 Score=49.05 Aligned_cols=24 Identities=13% Similarity=0.068 Sum_probs=20.4
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhc
Q 044772 21 KFIKCVTVRDGAVGKTCLLISYTG 44 (159)
Q Consensus 21 ~~~ki~vvG~~~~GKSsli~~l~~ 44 (159)
+...++|+|.+|||||||++.|.+
T Consensus 368 ~G~iI~LiG~sGSGKSTLar~La~ 391 (552)
T 3cr8_A 368 QGFTVFFTGLSGAGKSTLARALAA 391 (552)
T ss_dssp SCEEEEEEESSCHHHHHHHHHHHH
T ss_pred cceEEEEECCCCChHHHHHHHHHH
Confidence 345799999999999999988864
No 489
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=95.32 E-value=0.0093 Score=48.12 Aligned_cols=21 Identities=29% Similarity=0.159 Sum_probs=18.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 044772 24 KCVTVRDGAVGKTCLLISYTG 44 (159)
Q Consensus 24 ki~vvG~~~~GKSsli~~l~~ 44 (159)
.++++|++|+|||+|++.+.+
T Consensus 110 ~vll~Gp~GtGKTtlar~ia~ 130 (543)
T 3m6a_A 110 ILCLAGPPGVGKTSLAKSIAK 130 (543)
T ss_dssp EEEEESSSSSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999988764
No 490
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=95.29 E-value=0.01 Score=44.40 Aligned_cols=23 Identities=17% Similarity=0.047 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcC
Q 044772 23 IKCVTVRDGAVGKTCLLISYTGN 45 (159)
Q Consensus 23 ~ki~vvG~~~~GKSsli~~l~~~ 45 (159)
..+++.|++|+|||+|++.+...
T Consensus 56 ~~vll~G~~GtGKT~la~~ia~~ 78 (338)
T 3pfi_A 56 DHILFSGPAGLGKTTLANIISYE 78 (338)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEECcCCCCHHHHHHHHHHH
Confidence 35999999999999999988643
No 491
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.28 E-value=0.012 Score=46.23 Aligned_cols=22 Identities=18% Similarity=0.141 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHhc
Q 044772 23 IKCVTVRDGAVGKTCLLISYTG 44 (159)
Q Consensus 23 ~ki~vvG~~~~GKSsli~~l~~ 44 (159)
.-+++.|+||+|||+|+..+.+
T Consensus 207 rGiLL~GPPGtGKT~lakAiA~ 228 (428)
T 4b4t_K 207 RGVLLYGPPGTGKTMLVKAVAN 228 (428)
T ss_dssp CEEEEESCTTTTHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 4599999999999999998875
No 492
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=95.25 E-value=0.011 Score=45.14 Aligned_cols=23 Identities=13% Similarity=0.095 Sum_probs=20.1
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhc
Q 044772 22 FIKCVTVRDGAVGKTCLLISYTG 44 (159)
Q Consensus 22 ~~ki~vvG~~~~GKSsli~~l~~ 44 (159)
...+++.|++|+|||+++..+..
T Consensus 72 ~~~ill~Gp~GtGKT~la~~la~ 94 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMAQTLAK 94 (376)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHH
T ss_pred CCCEEEECCCCCCHHHHHHHHHH
Confidence 34699999999999999988874
No 493
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=95.23 E-value=0.012 Score=44.49 Aligned_cols=19 Identities=21% Similarity=0.300 Sum_probs=16.6
Q ss_pred EEEEcCCCCCHHHHHHHHh
Q 044772 25 CVTVRDGAVGKTCLLISYT 43 (159)
Q Consensus 25 i~vvG~~~~GKSsli~~l~ 43 (159)
.+|+|++|+|||+|+..+.
T Consensus 26 ~~i~G~NGsGKS~lleAi~ 44 (339)
T 3qkt_A 26 NLIIGQNGSGKSSLLDAIL 44 (339)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 3689999999999999764
No 494
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=95.21 E-value=0.022 Score=45.73 Aligned_cols=23 Identities=30% Similarity=0.088 Sum_probs=19.7
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHh
Q 044772 21 KFIKCVTVRDGAVGKTCLLISYT 43 (159)
Q Consensus 21 ~~~ki~vvG~~~~GKSsli~~l~ 43 (159)
...-|+++|.+|+||||+..+|.
T Consensus 34 ~~~lIvlvGlpGSGKSTia~~La 56 (520)
T 2axn_A 34 SPTVIVMVGLPARGKTYISKKLT 56 (520)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 44568999999999999998874
No 495
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=95.21 E-value=0.013 Score=42.46 Aligned_cols=24 Identities=8% Similarity=0.069 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCC
Q 044772 23 IKCVTVRDGAVGKTCLLISYTGNT 46 (159)
Q Consensus 23 ~ki~vvG~~~~GKSsli~~l~~~~ 46 (159)
..+++.|++|+|||+|++.+....
T Consensus 30 ~~vll~G~~GtGKt~la~~i~~~~ 53 (265)
T 2bjv_A 30 KPVLIIGERGTGKELIASRLHYLS 53 (265)
T ss_dssp SCEEEECCTTSCHHHHHHHHHHTS
T ss_pred CCEEEECCCCCcHHHHHHHHHHhc
Confidence 469999999999999999887543
No 496
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=95.19 E-value=0.0067 Score=53.85 Aligned_cols=21 Identities=14% Similarity=0.167 Sum_probs=0.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 044772 24 KCVTVRDGAVGKTCLLISYTG 44 (159)
Q Consensus 24 ki~vvG~~~~GKSsli~~l~~ 44 (159)
+|.+||++|+|||||++.|.+
T Consensus 1107 ~vaIVG~SGsGKSTL~~lL~r 1127 (1321)
T 4f4c_A 1107 TLALVGPSGCGKSTVVALLER 1127 (1321)
T ss_dssp EEEEECSTTSSTTSHHHHHTT
T ss_pred EEEEECCCCChHHHHHHHHhc
No 497
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=95.19 E-value=0.011 Score=46.39 Aligned_cols=22 Identities=27% Similarity=0.146 Sum_probs=19.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHhc
Q 044772 23 IKCVTVRDGAVGKTCLLISYTG 44 (159)
Q Consensus 23 ~ki~vvG~~~~GKSsli~~l~~ 44 (159)
-.+++.|++|+|||+|++.+.+
T Consensus 131 ~~lll~Gp~G~GKTtLa~aia~ 152 (440)
T 2z4s_A 131 NPLFIYGGVGLGKTHLLQSIGN 152 (440)
T ss_dssp CCEEEECSSSSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 3589999999999999988864
No 498
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.17 E-value=0.013 Score=46.00 Aligned_cols=23 Identities=17% Similarity=0.034 Sum_probs=20.5
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhc
Q 044772 22 FIKCVTVRDGAVGKTCLLISYTG 44 (159)
Q Consensus 22 ~~ki~vvG~~~~GKSsli~~l~~ 44 (159)
+..|++.|+||+|||+|+..+.+
T Consensus 215 prGvLL~GPPGtGKTllAkAiA~ 237 (437)
T 4b4t_L 215 PKGVLLYGPPGTGKTLLAKAVAA 237 (437)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHH
Confidence 45799999999999999999875
No 499
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=95.17 E-value=0.02 Score=44.98 Aligned_cols=23 Identities=17% Similarity=-0.060 Sum_probs=20.0
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHh
Q 044772 21 KFIKCVTVRDGAVGKTCLLISYT 43 (159)
Q Consensus 21 ~~~ki~vvG~~~~GKSsli~~l~ 43 (159)
...-|+++|++|+||||++..|.
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA 118 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLA 118 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 45678999999999999998876
No 500
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=95.17 E-value=0.012 Score=44.86 Aligned_cols=22 Identities=14% Similarity=0.057 Sum_probs=19.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHhc
Q 044772 23 IKCVTVRDGAVGKTCLLISYTG 44 (159)
Q Consensus 23 ~ki~vvG~~~~GKSsli~~l~~ 44 (159)
..|++.|++|+|||+|++.+..
T Consensus 85 ~~iLL~GppGtGKT~la~ala~ 106 (355)
T 2qp9_X 85 SGILLYGPPGTGKSYLAKAVAT 106 (355)
T ss_dssp CCEEEECSTTSCHHHHHHHHHH
T ss_pred ceEEEECCCCCcHHHHHHHHHH
Confidence 4599999999999999998875
Done!