BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 044773
(289 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1YNU|A Chain A, Crystal Structure Of Apple Acc Synthase In Complex With
L-Vinylglycine
Length = 473
Score = 462 bits (1190), Expect = e-131, Method: Compositional matrix adjust.
Identities = 224/292 (76%), Positives = 251/292 (85%), Gaps = 5/292 (1%)
Query: 1 AYQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSS 60
AYQ A+KR+L+VKGVLVTNPSNPLGTTM+RNEL LL++F+ +K IHLISDEIYSGT FSS
Sbjct: 181 AYQEAEKRNLRVKGVLVTNPSNPLGTTMTRNELYLLLSFVEDKGIHLISDEIYSGTAFSS 240
Query: 61 PGFVSIMEILKDRNC-ENTEVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDTVVAAATKMS 119
P F+S+ME+LKDRNC EN+EVW RVH+VYSLSKDLGLPGFRVGAIYSNDD VVAAATKMS
Sbjct: 241 PSFISVMEVLKDRNCDENSEVWQRVHVVYSLSKDLGLPGFRVGAIYSNDDMVVAAATKMS 300
Query: 120 SFGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEKAGISCLKSNAGLF 179
SFGLVSSQTQ+LLSA+LSDKK +NYI+EN KRLKQR +KLVSGL+K+GISCL NAGLF
Sbjct: 301 SFGLVSSQTQHLLSAMLSDKKLTKNYIAENHKRLKQRQKKLVSGLQKSGISCLNGNAGLF 360
Query: 180 CWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKL 239
CWVDMRHLL SNTFEAEMELWKKIVY+V LNISPGSSCHCTEPGWFRVCFAN+ E TL L
Sbjct: 361 CWVDMRHLLRSNTFEAEMELWKKIVYEVHLNISPGSSCHCTEPGWFRVCFANLPERTLDL 420
Query: 240 SMQRLKAFVDSITTTLHNQSNHQS--IKNSRRRSFTKWVFRLSFDD--PMTG 287
+MQRLKAFV QS + +SRR+S TKWV RLSFDD P+ G
Sbjct: 421 AMQRLKAFVGEYYNVPEVNGGSQSSHLSHSRRQSLTKWVSRLSFDDRGPIPG 472
>pdb|1M7Y|A Chain A, Crystal Structure Of Apple Acc Synthase In Complex With L-
Aminoethoxyvinylglycine
pdb|1M4N|A Chain A, Crystal Structure Of Apple Acc Synthase In Complex With
[2-(Amino-
Oxy)ethyl](5'-Deoxyadenosin-5'-Yl)(Methyl)sulfonium
Length = 435
Score = 438 bits (1127), Expect = e-123, Method: Compositional matrix adjust.
Identities = 206/249 (82%), Positives = 229/249 (91%), Gaps = 1/249 (0%)
Query: 1 AYQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSS 60
AYQ A+KR+L+VKGVLVTNPSNPLGTTM+RNEL LL++F+ +K IHLISDEIYSGT FSS
Sbjct: 181 AYQEAEKRNLRVKGVLVTNPSNPLGTTMTRNELYLLLSFVEDKGIHLISDEIYSGTAFSS 240
Query: 61 PGFVSIMEILKDRNC-ENTEVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDTVVAAATKMS 119
P F+S+ME+LKDRNC EN+EVW RVH+VYSLSKDLGLPGFRVGAIYSNDD VVAAATKMS
Sbjct: 241 PSFISVMEVLKDRNCDENSEVWQRVHVVYSLSKDLGLPGFRVGAIYSNDDMVVAAATKMS 300
Query: 120 SFGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEKAGISCLKSNAGLF 179
SFGLVSSQTQ+LLSA+LSDKK +NYI+EN KRLKQR +KLVSGL+K+GISCL NAGLF
Sbjct: 301 SFGLVSSQTQHLLSAMLSDKKLTKNYIAENHKRLKQRQKKLVSGLQKSGISCLNGNAGLF 360
Query: 180 CWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKL 239
CWVDMRHLL SNTFEAEMELWKKIVY+V LNISPGSSCHCTEPGWFRVCFAN+ E TL L
Sbjct: 361 CWVDMRHLLRSNTFEAEMELWKKIVYEVHLNISPGSSCHCTEPGWFRVCFANLPERTLDL 420
Query: 240 SMQRLKAFV 248
+MQRLKAFV
Sbjct: 421 AMQRLKAFV 429
>pdb|1B8G|A Chain A, 1-aminocyclopropane-1-carboxylate Synthase
pdb|1B8G|B Chain B, 1-aminocyclopropane-1-carboxylate Synthase
Length = 429
Score = 438 bits (1127), Expect = e-123, Method: Compositional matrix adjust.
Identities = 206/249 (82%), Positives = 229/249 (91%), Gaps = 1/249 (0%)
Query: 1 AYQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSS 60
AYQ A+KR+L+VKGVLVTNPSNPLGTTM+RNEL LL++F+ +K IHLISDEIYSGT FSS
Sbjct: 179 AYQEAEKRNLRVKGVLVTNPSNPLGTTMTRNELYLLLSFVEDKGIHLISDEIYSGTAFSS 238
Query: 61 PGFVSIMEILKDRNC-ENTEVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDTVVAAATKMS 119
P F+S+ME+LKDRNC EN+EVW RVH+VYSLSKDLGLPGFRVGAIYSNDD VVAAATKMS
Sbjct: 239 PSFISVMEVLKDRNCDENSEVWQRVHVVYSLSKDLGLPGFRVGAIYSNDDMVVAAATKMS 298
Query: 120 SFGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEKAGISCLKSNAGLF 179
SFGLVSSQTQ+LLSA+LSDKK +NYI+EN KRLKQR +KLVSGL+K+GISCL NAGLF
Sbjct: 299 SFGLVSSQTQHLLSAMLSDKKLTKNYIAENHKRLKQRQKKLVSGLQKSGISCLNGNAGLF 358
Query: 180 CWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKL 239
CWVDMRHLL SNTFEAEMELWKKIVY+V LNISPGSSCHCTEPGWFRVCFAN+ E TL L
Sbjct: 359 CWVDMRHLLRSNTFEAEMELWKKIVYEVHLNISPGSSCHCTEPGWFRVCFANLPERTLDL 418
Query: 240 SMQRLKAFV 248
+MQRLKAFV
Sbjct: 419 AMQRLKAFV 427
>pdb|3PIU|A Chain A, High-Resolution Structure Of Native Malus Domestica Acc
Synthase
Length = 410
Score = 419 bits (1077), Expect = e-117, Method: Compositional matrix adjust.
Identities = 201/249 (80%), Positives = 223/249 (89%), Gaps = 7/249 (2%)
Query: 1 AYQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSS 60
AYQ A+KR+L+VKGVLVTNPSNPLGTTM+RNEL LL++F+ +K IHLISDEIYSGT FSS
Sbjct: 164 AYQEAEKRNLRVKGVLVTNPSNPLGTTMTRNELYLLLSFVEDKGIHLISDEIYSGTAFSS 223
Query: 61 PGFVSIMEILKDRNCENTEVWNRVHIVYSLS-KDLGLPGFRVGAIYSNDDTVVAAATKMS 119
P F+S+ME+LKD EVW RVH+VYSLS KDLGLPGFRVGAIYSNDD VVAAATKMS
Sbjct: 224 PSFISVMEVLKD------EVWQRVHVVYSLSXKDLGLPGFRVGAIYSNDDMVVAAATKMS 277
Query: 120 SFGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEKAGISCLKSNAGLF 179
SFGLVSSQTQ+LLSA+LSDKK +NYI+EN KRLKQR +KLVSGL+K+GISCL NAGLF
Sbjct: 278 SFGLVSSQTQHLLSAMLSDKKLTKNYIAENHKRLKQRQKKLVSGLQKSGISCLNGNAGLF 337
Query: 180 CWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKL 239
CWVDMRHLL SNTFEAEMELWKKIVY+V LNISPGSSCHCTEPGWFRVCFAN+ E TL L
Sbjct: 338 CWVDMRHLLRSNTFEAEMELWKKIVYEVHLNISPGSSCHCTEPGWFRVCFANLPERTLDL 397
Query: 240 SMQRLKAFV 248
+MQRLKAFV
Sbjct: 398 AMQRLKAFV 406
>pdb|1IAX|A Chain A, Crystal Structure Of Acc Synthase Complexed With Plp
pdb|1IAX|B Chain B, Crystal Structure Of Acc Synthase Complexed With Plp
pdb|1IAY|A Chain A, Crystal Structure Of Acc Synthase Complexed With Cofactor
Plp And Inhibitor Avg
Length = 428
Score = 310 bits (795), Expect = 4e-85, Method: Compositional matrix adjust.
Identities = 144/248 (58%), Positives = 191/248 (77%), Gaps = 1/248 (0%)
Query: 1 AYQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSS 60
AY+ AQK ++KVKG+++TNPSNPLGTT+ ++ L +++F + NIHL+ DEIY+ TVF +
Sbjct: 178 AYENAQKSNIKVKGLILTNPSNPLGTTLDKDTLKSVLSFTNQHNIHLVCDEIYAATVFDT 237
Query: 61 PGFVSIMEILKDRNCENTEVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDTVVAAATKMSS 120
P FVSI EIL ++ + VHIVYSLSKD+GLPGFRVG IYS +D VV A KMSS
Sbjct: 238 PQFVSIAEILDEQEMTYCNK-DLVHIVYSLSKDMGLPGFRVGIIYSFNDDVVNCARKMSS 296
Query: 121 FGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEKAGISCLKSNAGLFC 180
FGLVS+QTQY L+A+LSD+KF N++ E+ RL +RH+ +GLE GI CLK+NAGLFC
Sbjct: 297 FGLVSTQTQYFLAAMLSDEKFVDNFLRESAMRLGKRHKHFTNGLEVVGIKCLKNNAGLFC 356
Query: 181 WVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKLS 240
W+D+R LL +TF++EM LW+ I+ DVKLN+SPGSS C EPGWFRVCFANM + T+ ++
Sbjct: 357 WMDLRPLLRESTFDSEMSLWRVIINDVKLNVSPGSSFECQEPGWFRVCFANMDDGTVDIA 416
Query: 241 MQRLKAFV 248
+ R++ FV
Sbjct: 417 LARIRRFV 424
>pdb|1O4S|A Chain A, Crystal Structure Of Aspartate Aminotransferase (Tm1255)
From Thermotoga Maritima At 1.90 A Resolution
pdb|1O4S|B Chain B, Crystal Structure Of Aspartate Aminotransferase (Tm1255)
From Thermotoga Maritima At 1.90 A Resolution
Length = 389
Score = 77.0 bits (188), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 62/243 (25%), Positives = 122/243 (50%), Gaps = 31/243 (12%)
Query: 11 KVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEIL 70
K K VL+ +P+NP G R L LV ++N ++ISDE+Y V++ F SI+++
Sbjct: 174 KTKAVLINSPNNPTGVVYRREFLEGLVRLAKKRNFYIISDEVYDSLVYTDE-FTSILDV- 231
Query: 71 KDRNCENTEVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDTVVAAATKMSSF--GLVSSQT 128
+E ++R+ + SK + G+RVG + S+ + V A +K+ S +++
Sbjct: 232 -------SEGFDRIVYINGFSKSHSMTGWRVGYLISS-EKVATAVSKIQSHTTSCINTVA 283
Query: 129 QY-LLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEKAGISCLKSNAGLFCWVDMRHL 187
QY L AL D + + K+R +V L+K G+ ++ + + +R
Sbjct: 284 QYAALKALEVDNSYMV-------QTFKERKNFVVERLKKMGVKFVEPEGAFYLFFKVRG- 335
Query: 188 LSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKLSMQRLKAF 247
+++ ++++ + K+ + PGS+ +PG+ R+ FA S + L ++ R++ F
Sbjct: 336 -------DDVKFCERLLEEKKVALVPGSA--FLKPGFVRLSFAT-SIERLTEALDRIEDF 385
Query: 248 VDS 250
++S
Sbjct: 386 LNS 388
>pdb|2Z61|A Chain A, Crystal Structure Of Mj0684 From Methanococcus Jannaschii
Reveals Its Similarity In The Active Site To Kynurenine
Aminotransferases
Length = 370
Score = 72.4 bits (176), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 58/239 (24%), Positives = 112/239 (46%), Gaps = 23/239 (9%)
Query: 11 KVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEIL 70
K K +++ +PSNPLG + R + F E ++ISDEIY+G V+ + +I
Sbjct: 154 KTKAIIINSPSNPLGEVIDRE----IYEFAYENIPYIISDEIYNGLVYEGKCYSAIE--- 206
Query: 71 KDRNCENTEVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDTVVAAATKMSSFGLVSSQTQY 130
D N E T + N +Y+++ G+R+G + SND+ ++ A K+ +S+ T
Sbjct: 207 FDENLEKTILINGFSXLYAMT------GWRIGYVISNDE-IIEAILKLQQNLFISAPTIS 259
Query: 131 LLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEKAGISCLKSNAGLFCWVDMRHLLSS 190
+AL + +K + I+ K +R R ++ ++ G + +
Sbjct: 260 QYAALKAFEKETEREINSMIKEFDRRRRLVLKYVKDFGWEVNNPIGAYYVF--------P 311
Query: 191 NTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKLSMQRLKAFVD 249
N E E K++ + + ++PG + R+ +AN S + +K ++R+K F++
Sbjct: 312 NIGEDGREFAYKLLKEKFVALTPGIGFGSKGKNYIRISYAN-SYENIKEGLERIKEFLN 369
>pdb|1DJU|A Chain A, Crystal Structure Of Aromatic Aminotransferase From
Pyrococcus Horikoshii Ot3
pdb|1DJU|B Chain B, Crystal Structure Of Aromatic Aminotransferase From
Pyrococcus Horikoshii Ot3
Length = 388
Score = 65.9 bits (159), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 49/238 (20%), Positives = 108/238 (45%), Gaps = 20/238 (8%)
Query: 11 KVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEIL 70
K + +++ +P NP G +++ +L + +F+ E ++ +ISDE+Y ++ SI +
Sbjct: 159 KTRALIINSPCNPTGAVLTKKDLEEIADFVVEHDLIVISDEVYEHFIYDDARHYSIASL- 217
Query: 71 KDRNCENTEVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDTVVAAATKMSSFGLVSSQT-- 128
++ R V SK + G+R+G + + ++ K + T
Sbjct: 218 -------DGMFERTITVNGFSKTFAMTGWRLGFV-AAPSWIIERMVKFQMYNATCPVTFI 269
Query: 129 QYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEKAGISCLKSNAGLFCWVDMRHL- 187
QY + L D++ + + E +K +R + + L + G+ +K + + +R
Sbjct: 270 QYAAAKALKDER-SWKAVEEMRKEYDRRRKLVWKRLNEMGLPTVKPKGAFYIFPRIRDTG 328
Query: 188 LSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKLSMQRLK 245
L+S F M + + ++ + PGS+ G+ R+ +A E L+ +M+R++
Sbjct: 329 LTSKKFSELM------LKEARVAVVPGSAFGKAGEGYVRISYATAYE-KLEEAMERME 379
>pdb|1GDE|A Chain A, Crystal Structure Of Pyrococcus Protein A-1 E-form
pdb|1GDE|B Chain B, Crystal Structure Of Pyrococcus Protein A-1 E-form
pdb|1GD9|A Chain A, Crystall Structure Of Pyrococcus Protein-A1
pdb|1GD9|B Chain B, Crystall Structure Of Pyrococcus Protein-A1
Length = 389
Score = 65.1 bits (157), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 49/238 (20%), Positives = 107/238 (44%), Gaps = 20/238 (8%)
Query: 11 KVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEIL 70
K + +++ +P NP G +++ +L + +F+ E ++ +ISDE+Y ++ SI +
Sbjct: 160 KTRALIINSPCNPTGAVLTKKDLEEIADFVVEHDLIVISDEVYEHFIYDDARHYSIASL- 218
Query: 71 KDRNCENTEVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDTVVAAATKMSSFGLVSSQT-- 128
++ R V SK + G+R+G + + ++ K + T
Sbjct: 219 -------DGMFERTITVNGFSKTFAMTGWRLGFV-AAPSWIIERMVKFQMYNATCPVTFI 270
Query: 129 QYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEKAGISCLKSNAGLFCWVDMRHL- 187
QY + L D++ + + E +K +R + + L + G+ +K + + +R
Sbjct: 271 QYAAAKALKDER-SWKAVEEMRKEYDRRRKLVWKRLNEMGLPTVKPKGAFYIFPRIRDTG 329
Query: 188 LSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKLSMQRLK 245
L+S F M + + ++ + PGS+ G+ R+ +A E L+ +M R++
Sbjct: 330 LTSKKFSELM------LKEARVAVVPGSAFGKAGEGYVRISYATAYE-KLEEAMDRME 380
>pdb|1J32|A Chain A, Aspartate Aminotransferase From Phormidium Lapideum
pdb|1J32|B Chain B, Aspartate Aminotransferase From Phormidium Lapideum
Length = 388
Score = 60.8 bits (146), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 55/252 (21%), Positives = 110/252 (43%), Gaps = 22/252 (8%)
Query: 3 QLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPG 62
Q+ Q K K ++ PSNP G + +E+ + E + ++SDEIY ++
Sbjct: 155 QIRQAITPKTKLLVFNTPSNPTGMVYTPDEVRAIAQVAVEAGLWVLSDEIYEKILYDDAQ 214
Query: 63 FVSIMEILKDRNCENTEVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDTVVAAATKMS--S 120
+SI + E + R + +K + G+RVG + +V AATK+ S
Sbjct: 215 HLSI-------GAASPEAYERSVVCSGFAKTYAMTGWRVG-FLAGPVPLVKAATKIQGHS 266
Query: 121 FGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEK-AGISCLKSNAGLF 179
V + QY ++ + +Q+ + E +R R ++ L G+ C K + +
Sbjct: 267 TSNVCTFAQY---GAIAAYENSQDCVQEMLAAFAERRRYMLDALNAMPGLECPKPDGAFY 323
Query: 180 CWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKL 239
+ + + T + ++ +++ ++ PG++ + R+ +A DT+K
Sbjct: 324 MFPSI-----AKTGRSSLDFCSELLDQHQVATVPGAAFGADD--CIRLSYAT-DLDTIKR 375
Query: 240 SMQRLKAFVDSI 251
M+RL+ F+ I
Sbjct: 376 GMERLEKFLHGI 387
>pdb|2X5D|A Chain A, Crystal Structure Of A Probable Aminotransferase From
Pseudomonas Aeruginosa
pdb|2X5D|B Chain B, Crystal Structure Of A Probable Aminotransferase From
Pseudomonas Aeruginosa
pdb|2X5D|C Chain C, Crystal Structure Of A Probable Aminotransferase From
Pseudomonas Aeruginosa
pdb|2X5D|D Chain D, Crystal Structure Of A Probable Aminotransferase From
Pseudomonas Aeruginosa
Length = 412
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 55/249 (22%), Positives = 105/249 (42%), Gaps = 37/249 (14%)
Query: 11 KVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEI- 69
K + +++ PSNP + + +V + ++ ++ D Y+ V+ SIM++
Sbjct: 172 KPRMMILGFPSNPTAQCVELDFFERVVALAKQYDVMVVHDLAYADIVYDGWKAPSIMQVP 231
Query: 70 -LKDRNCENTEVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDTVVAAATKMS--SFGLVSS 126
KD E ++LSK + G+R+G + N + V A A S +G +
Sbjct: 232 GAKDIAVE----------FFTLSKSYNMAGWRIGFMVGNPELVSALARIKSYHDYGTFTP 281
Query: 127 QTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEKAGISCLKSNAGLFCWVDMRH 186
++AL D Q + + ++ +QR LV GL +AG A ++ W
Sbjct: 282 LQVAAIAALEGD----QQCVRDIARQYQQRRDVLVKGLREAGWMVENPKASMYVWA---K 334
Query: 187 LLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKLSM----Q 242
+ +E KK++ D K+++SPG + F + +D ++ ++
Sbjct: 335 IPEPYAHLGSLEFAKKLLQDAKVSVSPG------------IGFGDYGDDHVRFALIENRD 382
Query: 243 RLKAFVDSI 251
RL+ V I
Sbjct: 383 RLRQAVRGI 391
>pdb|1BKG|A Chain A, Aspartate Aminotransferase From Thermus Thermophilus With
Maleate
pdb|1BKG|B Chain B, Aspartate Aminotransferase From Thermus Thermophilus With
Maleate
pdb|1BKG|C Chain C, Aspartate Aminotransferase From Thermus Thermophilus With
Maleate
pdb|1BKG|D Chain D, Aspartate Aminotransferase From Thermus Thermophilus With
Maleate
Length = 385
Score = 58.9 bits (141), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 52/241 (21%), Positives = 103/241 (42%), Gaps = 33/241 (13%)
Query: 11 KVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFS----SPGFVSI 66
+ K ++V +P+NP G + L L E + +L+SDEIY ++ SPG V+
Sbjct: 164 RTKALVVNSPNNPTGAVYPKEVLEALARLAVEHDFYLVSDEIYEHLLYEGEHFSPGRVAP 223
Query: 67 MEILKDRNCENTEVWNRVHIVYSLSKDLGLPGFRVGAIYS-NDDTVVAAATKMSSFGLVS 125
L V +K + G+R+G Y+ V+ A +SS S
Sbjct: 224 EHTL---------------TVNGAAKAFAMTGWRIG--YACGPKEVIKAMASVSSQSTTS 266
Query: 126 SQT--QYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEKAGISCLKSNAGLFCWVD 183
T Q+ L++++ ++ ++ ++ ++R L+ GL G+ ++ + + +D
Sbjct: 267 PDTIAQWATLEALTNQEASRAFVEMAREAYRRRRDLLLEGLTALGLKAVRPSGAFYVLMD 326
Query: 184 MRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKLSMQR 243
+ AE L + + + PG+ G R+ +A SE+ L+ +++R
Sbjct: 327 TSPIAPDEVRAAERLL------EAGVAVVPGTDFAAF--GHVRLSYAT-SEENLRKALER 377
Query: 244 L 244
Sbjct: 378 F 378
>pdb|1BJW|A Chain A, Aspartate Aminotransferase From Thermus Thermophilus
pdb|1BJW|B Chain B, Aspartate Aminotransferase From Thermus Thermophilus
Length = 382
Score = 58.5 bits (140), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 52/241 (21%), Positives = 106/241 (43%), Gaps = 33/241 (13%)
Query: 11 KVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFS----SPGFVSI 66
+ K ++V +P+NP G + L L E + +L+SDEIY ++ SPG V+
Sbjct: 164 RTKALVVNSPNNPTGAVYPKEVLEALARLAVEHDFYLVSDEIYEHLLYEGEHFSPGRVA- 222
Query: 67 MEILKDRNCENTEVWNRVHIVYSLSKDLGLPGFRVGAIYS-NDDTVVAAATKMSSFGLVS 125
E+T N ++++ G+R+G Y+ V+ A +SS S
Sbjct: 223 --------PEHTLTVNGAAXAFAMT------GWRIG--YACGPKEVIKAMASVSSQSTTS 266
Query: 126 SQT--QYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEKAGISCLKSNAGLFCWVD 183
T Q+ L++++ ++ ++ ++ ++R L+ GL G+ ++ + + +D
Sbjct: 267 PDTIAQWATLEALTNQEASRAFVEMAREAYRRRRDLLLEGLTALGLKAVRPSGAFYVLMD 326
Query: 184 MRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKLSMQR 243
+ AE L + + + PG+ G R+ +A SE+ L+ +++R
Sbjct: 327 TSPIAPDEVRAAERLL------EAGVAVVPGTDFAAF--GHVRLSYAT-SEENLRKALER 377
Query: 244 L 244
Sbjct: 378 F 378
>pdb|1B5O|A Chain A, Thermus Thermophilus Aspartate Aminotransferase Single
Mutant 1
pdb|1B5O|B Chain B, Thermus Thermophilus Aspartate Aminotransferase Single
Mutant 1
Length = 385
Score = 58.5 bits (140), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 52/241 (21%), Positives = 103/241 (42%), Gaps = 33/241 (13%)
Query: 11 KVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFS----SPGFVSI 66
+ K ++V +P+NP G + L L E + +L+SDEIY ++ SPG V+
Sbjct: 164 RTKALVVNSPNNPTGAVYPKEVLEALARLAVEHDFYLVSDEIYEHLLYEGEHFSPGRVAP 223
Query: 67 MEILKDRNCENTEVWNRVHIVYSLSKDLGLPGFRVGAIYS-NDDTVVAAATKMSSFGLVS 125
L V +K + G+R+G Y+ V+ A +SS S
Sbjct: 224 EHTL---------------TVNGAAKAFAMTGWRIG--YACGPKEVIKAMASVSSQSTTS 266
Query: 126 SQT--QYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEKAGISCLKSNAGLFCWVD 183
T Q+ L++++ ++ ++ ++ ++R L+ GL G+ ++ + + +D
Sbjct: 267 PDTIAQWATLEALTNQEASRAFVEMAREAYRRRRDLLLEGLTALGLKAVRPSGAFYVLMD 326
Query: 184 MRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKLSMQR 243
+ AE L + + + PG+ G R+ +A SE+ L+ +++R
Sbjct: 327 TSPIAPDEVRAAERLL------EAGVAVVPGTDFAAF--GHVRLSYAT-SEENLRKALER 377
Query: 244 L 244
Sbjct: 378 F 378
>pdb|3ELE|A Chain A, Crystal Structure Of Amino Transferase (rer070207001803)
From Eubacterium Rectale At 2.10 A Resolution
pdb|3ELE|B Chain B, Crystal Structure Of Amino Transferase (rer070207001803)
From Eubacterium Rectale At 2.10 A Resolution
pdb|3ELE|C Chain C, Crystal Structure Of Amino Transferase (rer070207001803)
From Eubacterium Rectale At 2.10 A Resolution
pdb|3ELE|D Chain D, Crystal Structure Of Amino Transferase (rer070207001803)
From Eubacterium Rectale At 2.10 A Resolution
Length = 398
Score = 57.4 bits (137), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 55/235 (23%), Positives = 99/235 (42%), Gaps = 33/235 (14%)
Query: 4 LAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKN------IHLISDEIYSGTV 57
L ++ + +GV++ +P+NP GT S + L + + +K+ I +I+DE Y V
Sbjct: 165 LEERINAHTRGVIINSPNNPSGTVYSEETIKKLSDLLEKKSKEIGRPIFIIADEPYREIV 224
Query: 58 FSSPGFVSIMEILKDRNCENTEVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDTVVAAATK 117
+ + + + T+ ++ + YS SK L LPG R+G + D+ A
Sbjct: 225 YDG---IKVPFV--------TKYYDNTLVCYSYSKSLSLPGERIGYVLVPDEVYDKAELY 273
Query: 118 MSSFGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLV-SGLEKAGISCLKSNA 176
+ G Y+ + L K + + + +R L+ GL + G C K +
Sbjct: 274 AAVCG-AGRALGYVCAPSLFQKXIVKCQGATGDINAYKENRDLLYEGLTRIGYHCFKPDG 332
Query: 177 GLFCWVDMRHLLSSNTF--EAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCF 229
+ +V SN F +A+ E DV + + G C PGW R+ +
Sbjct: 333 AFYXFVKALE-DDSNAFCEKAKEE-------DVLIVAADGFGC----PGWVRISY 375
>pdb|1YIY|A Chain A, Aedes Aegypti Kynurenine Aminotransferase
pdb|1YIY|B Chain B, Aedes Aegypti Kynurenine Aminotransferase
pdb|2R5C|B Chain B, Aedes Kynurenine Aminotransferase In Complex With Cysteine
pdb|2R5E|A Chain A, Aedes Kynurenine Aminotransferase In Complex With
Glutamine
pdb|2R5E|B Chain B, Aedes Kynurenine Aminotransferase In Complex With
Glutamine
Length = 429
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 48/190 (25%), Positives = 74/190 (38%), Gaps = 25/190 (13%)
Query: 11 KVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEIL 70
K K +++ P NPLG M R EL ++ N + N+ +SDE+Y VF F I
Sbjct: 182 KTKMIIINTPHNPLGKVMDRAELEVVANLCKKWNVLCVSDEVYEHMVFEP--FEHI---- 235
Query: 71 KDRNCENTEVWNRVHIVYSLSKDLGLPGFRVGAIYSND-----------DTVVAAATKMS 119
R C +W R + S K L G+++G Y + + V AT +
Sbjct: 236 --RICTLPGMWERTITIGSAGKTFSLTGWKIGWAYGPEALLKNLQMVHQNCVYTCATPIQ 293
Query: 120 SFGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEKAGISCLKSNAGLF 179
V +T+ L K + Y + L + + S L + G++ G F
Sbjct: 294 EAIAVGFETE------LKRLKSPECYFNSISGELMAKRDYMASFLAEVGMNPTVPQGGYF 347
Query: 180 CWVDMRHLLS 189
D L S
Sbjct: 348 MVADWSSLDS 357
>pdb|1GC3|A Chain A, Thermus Thermophilus Aspartate Aminotransferase Tetra
Mutant 2 Complexed With Tryptophan
pdb|1GC3|B Chain B, Thermus Thermophilus Aspartate Aminotransferase Tetra
Mutant 2 Complexed With Tryptophan
pdb|1GC3|C Chain C, Thermus Thermophilus Aspartate Aminotransferase Tetra
Mutant 2 Complexed With Tryptophan
pdb|1GC3|D Chain D, Thermus Thermophilus Aspartate Aminotransferase Tetra
Mutant 2 Complexed With Tryptophan
pdb|1GC3|E Chain E, Thermus Thermophilus Aspartate Aminotransferase Tetra
Mutant 2 Complexed With Tryptophan
pdb|1GC3|F Chain F, Thermus Thermophilus Aspartate Aminotransferase Tetra
Mutant 2 Complexed With Tryptophan
pdb|1GC3|G Chain G, Thermus Thermophilus Aspartate Aminotransferase Tetra
Mutant 2 Complexed With Tryptophan
pdb|1GC3|H Chain H, Thermus Thermophilus Aspartate Aminotransferase Tetra
Mutant 2 Complexed With Tryptophan
pdb|1GC4|A Chain A, Thermus Thermophilus Aspartate Aminotransferase Tetra
Mutant 2 Complexed With Aspartate
pdb|1GC4|B Chain B, Thermus Thermophilus Aspartate Aminotransferase Tetra
Mutant 2 Complexed With Aspartate
pdb|1GC4|C Chain C, Thermus Thermophilus Aspartate Aminotransferase Tetra
Mutant 2 Complexed With Aspartate
pdb|1GC4|D Chain D, Thermus Thermophilus Aspartate Aminotransferase Tetra
Mutant 2 Complexed With Aspartate
pdb|5BJ4|A Chain A, Thermus Thermophilus Aspartate Aminotransferase Tetra
Mutant 2
pdb|5BJ4|B Chain B, Thermus Thermophilus Aspartate Aminotransferase Tetra
Mutant 2
Length = 385
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 51/241 (21%), Positives = 102/241 (42%), Gaps = 33/241 (13%)
Query: 11 KVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFS----SPGFVSI 66
+ K ++V +P+NP G + L L E + +L+SDEIY ++ SPG V+
Sbjct: 164 RTKALVVNSPNNPTGAVYPKEVLEALARLAVEHDFYLVSDEIYEHLLYEGEHFSPGRVAP 223
Query: 67 MEILKDRNCENTEVWNRVHIVYSLSKDLGLPGFRVGAIYS-NDDTVVAAATKMSSFGLVS 125
L V +K + G+R+G Y+ V+ A +S S
Sbjct: 224 EHTL---------------TVNGAAKAFAMTGWRIG--YACGPKEVIKAMASVSRQSTTS 266
Query: 126 SQT--QYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEKAGISCLKSNAGLFCWVD 183
T Q+ L++++ ++ ++ ++ ++R L+ GL G+ ++ + + +D
Sbjct: 267 PDTIAQWATLEALTNQEASRAFVEMAREAYRRRRDLLLEGLTALGLKAVRPSGAFYVLMD 326
Query: 184 MRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKLSMQR 243
+ AE L + + + PG+ G R+ +A SE+ L+ +++R
Sbjct: 327 TSPIAPDEVRAAERLL------EAGVAVVPGTDFAAF--GHVRLSYAT-SEENLRKALER 377
Query: 244 L 244
Sbjct: 378 F 378
>pdb|1GCK|A Chain A, Thermus Thermophilus Aspartate Aminotransferase Double
Mutant 1 Complexed With Aspartate
pdb|1GCK|B Chain B, Thermus Thermophilus Aspartate Aminotransferase Double
Mutant 1 Complexed With Aspartate
pdb|1B5P|A Chain A, Thermus Thermophilus Aspartate Aminotransferase Double
Mutant 1
pdb|1B5P|B Chain B, Thermus Thermophilus Aspartate Aminotransferase Double
Mutant 1
Length = 385
Score = 56.6 bits (135), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 51/241 (21%), Positives = 102/241 (42%), Gaps = 33/241 (13%)
Query: 11 KVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFS----SPGFVSI 66
+ K ++V +P+NP G + L L E + +L+SDEIY ++ SPG V+
Sbjct: 164 RTKALVVNSPNNPTGAVYPKEVLEALARLAVEHDFYLVSDEIYEHLLYEGEHFSPGRVAP 223
Query: 67 MEILKDRNCENTEVWNRVHIVYSLSKDLGLPGFRVGAIYS-NDDTVVAAATKMSSFGLVS 125
L V +K + G+R+G Y+ V+ A +S S
Sbjct: 224 EHTL---------------TVNGAAKAFAMTGWRIG--YACGPKEVIKAMASVSRQSTTS 266
Query: 126 SQT--QYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEKAGISCLKSNAGLFCWVD 183
T Q+ L++++ ++ ++ ++ ++R L+ GL G+ ++ + + +D
Sbjct: 267 PDTIAQWATLEALTNQEASRAFVEMAREAYRRRRDLLLEGLTALGLKAVRPSGAFYVLMD 326
Query: 184 MRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKLSMQR 243
+ AE L + + + PG+ G R+ +A SE+ L+ +++R
Sbjct: 327 TSPIAPDEVRAAERLL------EAGVAVVPGTDFAAF--GHVRLSYAT-SEENLRKALER 377
Query: 244 L 244
Sbjct: 378 F 378
>pdb|5BJ3|A Chain A, Thermus Thermophilus Aspartate Aminotransferase Tetra
Mutant 1
pdb|5BJ3|B Chain B, Thermus Thermophilus Aspartate Aminotransferase Tetra
Mutant 1
pdb|5BJ3|C Chain C, Thermus Thermophilus Aspartate Aminotransferase Tetra
Mutant 1
pdb|5BJ3|D Chain D, Thermus Thermophilus Aspartate Aminotransferase Tetra
Mutant 1
Length = 385
Score = 56.6 bits (135), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 51/241 (21%), Positives = 102/241 (42%), Gaps = 33/241 (13%)
Query: 11 KVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFS----SPGFVSI 66
+ K ++V +P+NP G + L L E + +L+SDEIY ++ SPG V+
Sbjct: 164 RTKALVVNSPNNPTGAVYPKEVLEALARLAVEHDFYLVSDEIYEHLLYEGEHFSPGRVAP 223
Query: 67 MEILKDRNCENTEVWNRVHIVYSLSKDLGLPGFRVGAIYS-NDDTVVAAATKMSSFGLVS 125
L V +K + G+R+G Y+ V+ A +S S
Sbjct: 224 EHTL---------------TVNGAAKAFAMTGWRIG--YACGPKEVIKAMASVSRQSTTS 266
Query: 126 SQT--QYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEKAGISCLKSNAGLFCWVD 183
T Q+ L++++ ++ ++ ++ ++R L+ GL G+ ++ + + +D
Sbjct: 267 PDTIAQWATLEALTNQEASRAFVEMAREAYRRRRDLLLEGLTALGLKAVRPSGAFYVLMD 326
Query: 184 MRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKLSMQR 243
+ AE L + + + PG+ G R+ +A SE+ L+ +++R
Sbjct: 327 TSPIAPDEVRAAERLL------EAGVAVVPGTDFAAF--GHVRLSYAT-SEENLRKALER 377
Query: 244 L 244
Sbjct: 378 F 378
>pdb|2GB3|A Chain A, Crystal Structure Of Aspartate Aminotransferase (Tm1698)
From Thermotoga Maritima At 2.50 A Resolution
pdb|2GB3|B Chain B, Crystal Structure Of Aspartate Aminotransferase (Tm1698)
From Thermotoga Maritima At 2.50 A Resolution
pdb|2GB3|C Chain C, Crystal Structure Of Aspartate Aminotransferase (Tm1698)
From Thermotoga Maritima At 2.50 A Resolution
pdb|2GB3|D Chain D, Crystal Structure Of Aspartate Aminotransferase (Tm1698)
From Thermotoga Maritima At 2.50 A Resolution
pdb|2GB3|E Chain E, Crystal Structure Of Aspartate Aminotransferase (Tm1698)
From Thermotoga Maritima At 2.50 A Resolution
pdb|2GB3|F Chain F, Crystal Structure Of Aspartate Aminotransferase (Tm1698)
From Thermotoga Maritima At 2.50 A Resolution
Length = 409
Score = 55.8 bits (133), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 40/169 (23%), Positives = 77/169 (45%), Gaps = 13/169 (7%)
Query: 11 KVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEIL 70
+ KG++++NP NP G ++E LV + LI DE+YS VF F S + I
Sbjct: 174 RTKGIVLSNPCNPTGVVYGKDEXRYLVEIAERHGLFLIVDEVYSEIVFRGE-FASALSIE 232
Query: 71 KDRNCENTEVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDTVVAAATKMSSFGLVSSQTQY 130
D +V ++ S+S G RVG + + ++ +++ A K++ L +
Sbjct: 233 SD----------KVVVIDSVSXKFSACGARVGCLITRNEELISHAXKLAQGRLAPPLLEQ 282
Query: 131 LLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEKAGISCLKSNAGLF 179
+ S L + ++ ++ ++R ++ LE+ G+ +G F
Sbjct: 283 IGSVGLLN--LDDSFFDFVRETYRERVETVLKKLEEHGLKRFTKPSGAF 329
>pdb|2O1B|A Chain A, Structure Of Aminotransferase From Staphylococcus Aureus
Length = 404
Score = 55.5 bits (132), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 52/239 (21%), Positives = 92/239 (38%), Gaps = 28/239 (11%)
Query: 11 KVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEIL 70
K K + +T P+NP G+T ++ + + + ++ D Y F + IL
Sbjct: 181 KTKLIYLTYPNNPTGSTATKEVFDEAIAKFKGTDTKIVHDFAYGAFGFDA----KNPSIL 236
Query: 71 KDRNCENTEVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDTVVA-----AATKMSSFGLVS 125
N ++ + +YSLSK GFRVG N D + A T FG +
Sbjct: 237 ASENGKDVAIE-----IYSLSKGYNXSGFRVGFAVGNKDXIQALKKYQTHTNAGXFGALQ 291
Query: 126 SQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEKAGISCLKSNAGLFCWVDMR 185
Y L+ +++ E K R + + L KA + + + G++ W++
Sbjct: 292 DAAIYALNHY-------DDFLEEQSNVFKTRRDRFEAXLAKADLPFVHAKGGIYVWLETP 344
Query: 186 HLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKLSMQRL 244
S FE + K I+ ++PG + R+ A + + L + RL
Sbjct: 345 PGYDSEQFEQFLVQEKSIL------VAPGKPFGENGNRYVRISLA-LDDQKLDEAAIRL 396
>pdb|1YIZ|A Chain A, Aedes Aegypti Kynurenine Aminotrasferase
pdb|1YIZ|B Chain B, Aedes Aegypti Kynurenine Aminotrasferase
pdb|2R5C|A Chain A, Aedes Kynurenine Aminotransferase In Complex With Cysteine
Length = 429
Score = 55.1 bits (131), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 47/190 (24%), Positives = 73/190 (38%), Gaps = 25/190 (13%)
Query: 11 KVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEIL 70
K K +++ P NPLG M R EL ++ N + N+ +SDE+Y VF F I
Sbjct: 182 KTKMIIINTPHNPLGKVMDRAELEVVANLCKKWNVLCVSDEVYEHMVFEP--FEHI---- 235
Query: 71 KDRNCENTEVWNRVHIVYSLSKDLGLPGFRVGAIYSND-----------DTVVAAATKMS 119
R C +W R + S L G+++G Y + + V AT +
Sbjct: 236 --RICTLPGMWERTITIGSAGXTFSLTGWKIGWAYGPEALLKNLQMVHQNCVYTCATPIQ 293
Query: 120 SFGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEKAGISCLKSNAGLF 179
V +T+ L K + Y + L + + S L + G++ G F
Sbjct: 294 EAIAVGFETE------LKRLKSPECYFNSISGELMAKRDYMASFLAEVGMNPTVPQGGYF 347
Query: 180 CWVDMRHLLS 189
D L S
Sbjct: 348 MVADWSSLDS 357
>pdb|1X0M|A Chain A, A Human Kynurenine Aminotransferase Ii Homologue From
Pyrococcus Horikoshii Ot3
Length = 403
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 55/248 (22%), Positives = 102/248 (41%), Gaps = 28/248 (11%)
Query: 8 RHLKVKG----VLVTNPS--NPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSP 61
+ LK +G V+ T P+ NP G TM+ + L+ +E + ++ D+ Y +S
Sbjct: 163 KELKSQGKKVKVVYTVPTFQNPAGVTMNEDRRKYLLELASEYDFIVVEDDPYGELRYSGN 222
Query: 62 GFVSIMEILKDRNCENTEVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDTVVAAATKMSSF 121
++ + + RV + + SK L PGFR+G + + + S
Sbjct: 223 ---------PEKKIKALDNEGRVIYLGTFSKILA-PGFRIGWMVGDPGIIRKMEIAKQST 272
Query: 122 GLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEK---AGISCLKSNAGL 178
L ++ +++ D + + +I E +K K R ++ LE+ G+ K G+
Sbjct: 273 DLCTNVFGQVVAWRYVDGGYLEKHIPEIRKFYKPRRDAMLEALEEFMPEGVKWTKPEGGM 332
Query: 179 FCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSS--CHCTEPGWFRVCFANMSEDT 236
F WV + + S E + K + Y PG + H R+ F + ED
Sbjct: 333 FIWVTLPDGIDSKKM-LERAIKKGVAY------VPGEAFYAHRDVKNTMRLNFTYVDEDK 385
Query: 237 LKLSMQRL 244
+ ++RL
Sbjct: 386 IMEGIKRL 393
>pdb|3AOV|A Chain A, Crystal Structure Of Pyrococcus Horikoshii Kynurenine
Aminotransferase In Complex With Plp
pdb|3AOV|C Chain C, Crystal Structure Of Pyrococcus Horikoshii Kynurenine
Aminotransferase In Complex With Plp
pdb|3AOW|A Chain A, Crystal Structure Of Pyrococcus Horikoshii Kynurenine
Aminotransferase In Complex With Akg
pdb|3AOW|C Chain C, Crystal Structure Of Pyrococcus Horikoshii Kynurenine
Aminotransferase In Complex With Akg
pdb|3ATH|A Chain A, Crystal Structure Of Pyrococcus Horikoshii Kynurenine
Aminotransferase In Complex With Four Akgs As Substrates
And Allosteric Effectors
pdb|3ATH|C Chain C, Crystal Structure Of Pyrococcus Horikoshii Kynurenine
Aminotransferase In Complex With Four Akgs As Substrates
And Allosteric Effectors
pdb|3AV7|A Chain A, Crystal Structure Of Pyrococcus Horikoshii Kynurenine
Aminotransferase In Complex With Pmp, Kyn As Substrates
And Kya As Products
pdb|3AV7|C Chain C, Crystal Structure Of Pyrococcus Horikoshii Kynurenine
Aminotransferase In Complex With Pmp, Kyn As Substrates
And Kya As Products
Length = 448
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 55/248 (22%), Positives = 102/248 (41%), Gaps = 28/248 (11%)
Query: 8 RHLKVKG----VLVTNPS--NPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSP 61
+ LK +G V+ T P+ NP G TM+ + L+ +E + ++ D+ Y +S
Sbjct: 208 KELKSQGKKVKVVYTVPTFQNPAGVTMNEDRRKYLLELASEYDFIVVEDDPYGELRYSGN 267
Query: 62 GFVSIMEILKDRNCENTEVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDTVVAAATKMSSF 121
++ + + RV + + SK L PGFR+G + + + S
Sbjct: 268 ---------PEKKIKALDNEGRVIYLGTFSKILA-PGFRIGWMVGDPGIIRKMEIAKQST 317
Query: 122 GLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEK---AGISCLKSNAGL 178
L ++ +++ D + + +I E +K K R ++ LE+ G+ K G+
Sbjct: 318 DLCTNVFGQVVAWRYVDGGYLEKHIPEIRKFYKPRRDAMLEALEEFMPEGVKWTKPEGGM 377
Query: 179 FCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSS--CHCTEPGWFRVCFANMSEDT 236
F WV + + S E + K + Y PG + H R+ F + ED
Sbjct: 378 FIWVTLPDGIDSKKM-LERAIKKGVAY------VPGEAFYAHRDVKNTMRLNFTYVDEDK 430
Query: 237 LKLSMQRL 244
+ ++RL
Sbjct: 431 IMEGIKRL 438
>pdb|3E2Z|B Chain B, Crystal Structure Of Mouse Kynurenine Aminotransferase Iii
In Complex With Kynurenine
pdb|3E2Y|A Chain A, Crystal Structure Of Mouse Kynurenine Aminotransferase Iii
In Complex With Glutamine
pdb|3E2Y|B Chain B, Crystal Structure Of Mouse Kynurenine Aminotransferase Iii
In Complex With Glutamine
Length = 410
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 44/190 (23%), Positives = 80/190 (42%), Gaps = 13/190 (6%)
Query: 3 QLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPG 62
+L K K K +++ P NPLG +R EL ++ + + + ISDE+Y V++
Sbjct: 159 ELESKFSSKTKAIILNTPHNPLGKVYTRQELQVIADLCVKHDTLCISDEVYEWLVYTGHT 218
Query: 63 FVSIMEILKDRNCENTEVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDTVVAAAT-KMSSF 121
V I + +W R + S K + G+++G + T + +SF
Sbjct: 219 HVKIATL--------PGMWERTITIGSAGKTFSVTGWKLGWSIGPAHLIKHLQTVQQNSF 270
Query: 122 GLVSSQTQYLLS-ALLSDKKFAQN---YISENKKRLKQRHRKLVSGLEKAGISCLKSNAG 177
++ Q L+ A D K + Y + K L+ + ++V L G+ + + G
Sbjct: 271 YTCATPLQAALAEAFWIDIKRMDDPECYFNSLPKELEVKRDRMVRLLNSVGLKPIVPDGG 330
Query: 178 LFCWVDMRHL 187
F D+ L
Sbjct: 331 YFIIADVSSL 340
>pdb|1W7N|A Chain A, Crystal Structure Of Human Kynurenine Aminotransferase I
In Pmp Form
Length = 422
Score = 52.4 bits (124), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 39/187 (20%), Positives = 79/187 (42%), Gaps = 13/187 (6%)
Query: 3 QLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPG 62
+LA K + K +++ P+NPLG SR EL L+ + + ++ I+DE+Y V+
Sbjct: 166 ELAGKFTSRTKALVLNTPNNPLGKVFSREELELVASLCQQHDVVCITDEVYQWMVYDGHQ 225
Query: 63 FVSIMEILKDRNCENTEVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDTVVAAAT-KMSSF 121
+SI + +W R + S K G++VG + D + T +S
Sbjct: 226 HISIASL--------PGMWERTLTIGSAGKTFSATGWKVGWVLGPDHIMKHLRTVHQNSV 277
Query: 122 GLVSSQTQYLLSALLSDKKF----AQNYISENKKRLKQRHRKLVSGLEKAGISCLKSNAG 177
+Q+Q ++ ++ +Y + + +++ ++ L+ G+ L
Sbjct: 278 FHCPTQSQAAVAESFEREQLLFRQPSSYFVQFPQAMQRCRDHMIRSLQSVGLKPLIPQGS 337
Query: 178 LFCWVDM 184
F D+
Sbjct: 338 YFLITDI 344
>pdb|1BW0|A Chain A, Crystal Structure Of Tyrosine Aminotransferase From
Trypanosoma Cruzi
pdb|1BW0|B Chain B, Crystal Structure Of Tyrosine Aminotransferase From
Trypanosoma Cruzi
Length = 416
Score = 52.4 bits (124), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 36/98 (36%), Positives = 50/98 (51%), Gaps = 17/98 (17%)
Query: 11 KVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEIL 70
K K ++VTNPSNP G+ SR + +V E + L SDEIY+G VF
Sbjct: 177 KTKLLIVTNPSNPCGSNFSRKHVEDIVRLAEELRLPLFSDEIYAGMVFKG---------- 226
Query: 71 KDRNCENTEVWN------RVHIVYSLSKDLGLPGFRVG 102
KD N T V + RV I+ + +L +PG+R+G
Sbjct: 227 KDPNATFTSVADFETTVPRV-ILGGTAXNLVVPGWRLG 263
>pdb|1V2D|A Chain A, Crystal Structure Of T.Th Hb8 Glutamine Aminotransferase
pdb|1V2E|A Chain A, Crystal Structure Of T.Th Hb8 Glutamine Aminotransferase
Complex With A-Keto-G-Methylthiobutyrate
pdb|1V2E|B Chain B, Crystal Structure Of T.Th Hb8 Glutamine Aminotransferase
Complex With A-Keto-G-Methylthiobutyrate
pdb|1V2F|A Chain A, Crystal Structure Of T.Th Hb8 Glutamine Aminotransferase
Complex With 3-Phenylpropionate
pdb|1V2F|B Chain B, Crystal Structure Of T.Th Hb8 Glutamine Aminotransferase
Complex With 3-Phenylpropionate
Length = 381
Score = 51.2 bits (121), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 52/246 (21%), Positives = 95/246 (38%), Gaps = 33/246 (13%)
Query: 11 KVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEIL 70
+ + +L+ P NP G EL + ++ LISDE+Y +
Sbjct: 152 RTRALLLNTPMNPTGLVFGERELEAIARLARAHDLFLISDEVYDELYYGE---------- 201
Query: 71 KDRNCENTEVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDTV--VAAATKMSSFGLVSSQT 128
+ R R V S K L G+RVG I + + +A + +SF +
Sbjct: 202 RPRRLREF-APERTFTVGSAGKRLEATGYRVGWIVGPKEFMPRLAGMRQWTSFSAPTPLQ 260
Query: 129 QYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEKAGISCLKSNAGLFCWVDMRHLL 188
+ AL ++ + + ++ ++R L GL G+ F
Sbjct: 261 AGVAEALKLARR--EGFYEALREGYRRRRDLLAGGLRAMGLRVYVPEGTYFLM------- 311
Query: 189 SSNTFEAEMELWK--KIVYDVKLNISPGSSCHCTEPG--WFRVCFANMSEDTLKLSMQRL 244
AE+ W ++V + ++ + P S+ + +P FR F +E+ L L+++RL
Sbjct: 312 ------AELPGWDAFRLVEEARVALIPASAFYLEDPPKDLFRFAFCK-TEEELHLALERL 364
Query: 245 KAFVDS 250
V+S
Sbjct: 365 GRVVNS 370
>pdb|3E2F|A Chain A, Crystal Structure Of Mouse Kynurenine Aminotransferase
Iii, Plp-Bound Form
pdb|3E2F|B Chain B, Crystal Structure Of Mouse Kynurenine Aminotransferase
Iii, Plp-Bound Form
pdb|3E2Z|A Chain A, Crystal Structure Of Mouse Kynurenine Aminotransferase Iii
In Complex With Kynurenine
pdb|2ZJG|A Chain A, Crystal Structural Of Mouse Kynurenine Aminotransferase
Iii
pdb|2ZJG|B Chain B, Crystal Structural Of Mouse Kynurenine Aminotransferase
Iii
Length = 410
Score = 50.8 bits (120), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 43/190 (22%), Positives = 79/190 (41%), Gaps = 13/190 (6%)
Query: 3 QLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPG 62
+L K K K +++ P NPLG +R EL ++ + + + ISDE+Y V++
Sbjct: 159 ELESKFSSKTKAIILNTPHNPLGKVYTRQELQVIADLCVKHDTLCISDEVYEWLVYTGHT 218
Query: 63 FVSIMEILKDRNCENTEVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDTVVAAAT-KMSSF 121
V I + +W R + S + G+++G + T + +SF
Sbjct: 219 HVKIATL--------PGMWERTITIGSAGXTFSVTGWKLGWSIGPAHLIKHLQTVQQNSF 270
Query: 122 GLVSSQTQYLLS-ALLSDKKFAQN---YISENKKRLKQRHRKLVSGLEKAGISCLKSNAG 177
++ Q L+ A D K + Y + K L+ + ++V L G+ + + G
Sbjct: 271 YTCATPLQAALAEAFWIDIKRMDDPECYFNSLPKELEVKRDRMVRLLNSVGLKPIVPDGG 330
Query: 178 LFCWVDMRHL 187
F D+ L
Sbjct: 331 YFIIADVSSL 340
>pdb|3G7Q|A Chain A, Crystal Structure Of Valine-Pyruvate Aminotransferase Avta
(Np_462565.1) From Salmonella Typhimurium Lt2 At 1.80 A
Resolution
Length = 417
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 37/102 (36%), Positives = 50/102 (49%), Gaps = 14/102 (13%)
Query: 15 VLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRN 74
+ V+ P+NP G ++ EL L + NI L+ D Y G F PG +
Sbjct: 184 ICVSRPTNPTGNVITDEELXKLDRLANQHNIPLVIDNAY-GVPF--PGIIF--------- 231
Query: 75 CENTEVWN-RVHIVYSLSKDLGLPGFRVGAIYSNDDTVVAAA 115
E +WN + + SLSK LGLPG R G I +ND T+ A A
Sbjct: 232 SEARPLWNPNIILCXSLSK-LGLPGSRCGIIIANDKTITAIA 272
>pdb|1XI9|A Chain A, Alanine Aminotransferase From Pyrococcus Furiosus
Pfu-1397077-001
pdb|1XI9|B Chain B, Alanine Aminotransferase From Pyrococcus Furiosus
Pfu-1397077-001
pdb|1XI9|C Chain C, Alanine Aminotransferase From Pyrococcus Furiosus
Pfu-1397077-001
pdb|1XI9|D Chain D, Alanine Aminotransferase From Pyrococcus Furiosus
Pfu-1397077-001
Length = 406
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 61/249 (24%), Positives = 102/249 (40%), Gaps = 33/249 (13%)
Query: 11 KVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFS----SPGFVSI 66
+ K + V NP+NP G + L ++N E I +ISDEIY + SPG ++
Sbjct: 174 RTKAIAVINPNNPTGALYDKKTLEEILNIAGEYEIPVISDEIYDLMTYEGEHISPGSLT- 232
Query: 67 MEILKDRNCENTEVWNRVHIVYSLSKDLGLPGFRVGAIYSNDD-----TVVAAATKMSSF 121
KD V ++ LSK G+R+G +Y D V A +++
Sbjct: 233 ----KDVP---------VIVMNGLSKVYFATGWRLGYMYFVDPENKLSEVREAIDRLARI 279
Query: 122 GLVS-SQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGL-EKAGISCLKSNAGLF 179
L + Q+ A L+ +Y+ E K+LK+R + L E GIS K +
Sbjct: 280 RLCPNTPAQFAAIAGLTG---PMDYLKEYMKKLKERRDYIYKRLNEIPGISTTKPQGAFY 336
Query: 180 CWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKL 239
+ + ++ + E ++++ + GS G FR F E L+
Sbjct: 337 IFPK----IEVGPWKNDKEFVLDVLHNAHVLFVHGSGFGEYGAGHFRAVFLPPIE-ILEE 391
Query: 240 SMQRLKAFV 248
+M R + F+
Sbjct: 392 AMDRFEKFM 400
>pdb|1W7L|A Chain A, Crystal Structure Of Human Kynurenine Aminotransferase I
pdb|1W7M|A Chain A, Crystal Structure Of Human Kynurenine Aminotransferase I
In Complex With L-Phe
Length = 422
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 38/187 (20%), Positives = 78/187 (41%), Gaps = 13/187 (6%)
Query: 3 QLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPG 62
+LA K + K +++ P+NPLG SR EL L+ + + ++ I+DE+Y V+
Sbjct: 166 ELAGKFTSRTKALVLNTPNNPLGKVFSREELELVASLCQQHDVVCITDEVYQWMVYDGHQ 225
Query: 63 FVSIMEILKDRNCENTEVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDTVVAAAT-KMSSF 121
+SI + +W R + S G++VG + D + T +S
Sbjct: 226 HISIASL--------PGMWERTLTIGSAGXTFSATGWKVGWVLGPDHIMKHLRTVHQNSV 277
Query: 122 GLVSSQTQYLLSALLSDKKF----AQNYISENKKRLKQRHRKLVSGLEKAGISCLKSNAG 177
+Q+Q ++ ++ +Y + + +++ ++ L+ G+ L
Sbjct: 278 FHCPTQSQAAVAESFEREQLLFRQPSSYFVQFPQAMQRCRDHMIRSLQSVGLKPLIPQGS 337
Query: 178 LFCWVDM 184
F D+
Sbjct: 338 YFLITDI 344
>pdb|3FVS|A Chain A, Human Kynurenine Aminotransferase I In Complex With
Glycerol
pdb|3FVS|B Chain B, Human Kynurenine Aminotransferase I In Complex With
Glycerol
pdb|3FVU|A Chain A, Crystal Structure Of Human Kynurenine Aminotransferase I
In Complex With Indole-3-acetic Acid
pdb|3FVU|B Chain B, Crystal Structure Of Human Kynurenine Aminotransferase I
In Complex With Indole-3-acetic Acid
pdb|3FVX|A Chain A, Human Kynurenine Aminotransferase I In Complex With Tris
pdb|3FVX|B Chain B, Human Kynurenine Aminotransferase I In Complex With Tris
Length = 422
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 49/106 (46%), Gaps = 8/106 (7%)
Query: 3 QLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPG 62
+LA K + K +++ P+NPLG SR EL L+ + + ++ I+DE+Y V+
Sbjct: 166 ELAGKFTSRTKALVLNTPNNPLGKVFSREELELVASLCQQHDVVCITDEVYQWMVYDGHQ 225
Query: 63 FVSIMEILKDRNCENTEVWNRVHIVYSLSKDLGLPGFRVGAIYSND 108
+SI + +W R + S G++VG + D
Sbjct: 226 HISIASL--------PGMWERTLTIGSAGXTFSATGWKVGWVLGPD 263
>pdb|3H14|A Chain A, Crystal Structure Of A Putative Aminotransferase From
Silicibacter Pomeroyi
Length = 391
Score = 48.5 bits (114), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 55/241 (22%), Positives = 90/241 (37%), Gaps = 25/241 (10%)
Query: 10 LKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEI 69
L + G+ V +P+NP GT + L+ + ISDEIY G + + ++
Sbjct: 160 LDLAGLXVASPANPTGTXLDHAAXGALIEAAQAQGASFISDEIYHGIEYEAKAVTAL--- 216
Query: 70 LKDRNCENTEVWNRVHIVYSLSKDLGLPGFRVG-AIYSNDDTVVAAATKMSSFGLVSSQT 128
E+ + +++ S SK G+RVG + D V + F +
Sbjct: 217 ---------ELTDECYVINSFSKYFSXTGWRVGWXVVPEDQVRVVERIAQNXFICAPHAS 267
Query: 129 QYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEKAGISCLKSNAGLF-CWVDMRHL 187
Q A L Q N K + + L KAG + + G F + D+ L
Sbjct: 268 QVAALAALDCDAELQ----ANLDVYKANRKLXLERLPKAGFTRIAPPDGAFYVYADVSDL 323
Query: 188 L-SSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKLSMQRLKA 246
S F AE+ + L+ P G R +A + D ++ + RL+A
Sbjct: 324 TDDSRAFAAEILEKAGVAVTPGLDFDPERGA-----GTLRFSYARATAD-IEEGLDRLEA 377
Query: 247 F 247
F
Sbjct: 378 F 378
>pdb|4DGT|A Chain A, Crystal Structure Of Plp-Bound Putative Aminotransferase
From Clostridium Difficile 630 Crystallized With
Magnesium Formate
pdb|4DGT|B Chain B, Crystal Structure Of Plp-Bound Putative Aminotransferase
From Clostridium Difficile 630 Crystallized With
Magnesium Formate
pdb|4DQ6|A Chain A, Crystal Structure Of Plp-Bound Putative Aminotransferase
From Clostridium Difficile 630
pdb|4DQ6|B Chain B, Crystal Structure Of Plp-Bound Putative Aminotransferase
From Clostridium Difficile 630
Length = 391
Score = 48.1 bits (113), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 60/257 (23%), Positives = 103/257 (40%), Gaps = 49/257 (19%)
Query: 2 YQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSP 61
Y+ + + VK ++ NP NP+G +++EL L + + N+ +ISDEI+S +
Sbjct: 155 YEDIENKIKDVKLFILCNPHNPVGRVWTKDELKKLGDICLKHNVKIISDEIHSDIILKKH 214
Query: 62 GFVSIMEILKDRNCENTEVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDT----VVAAATK 117
+ + I K E + +K + G + + D+ + A T+
Sbjct: 215 KHIPMASISK-------EFEKNTITCMAPTKTFNIAGLQSSYVVLPDEKDYKLLDDAFTR 267
Query: 118 M-----SSFGLVSSQTQY---------LLSALLSDKKFAQNYISENKKRLKQRHRKLVSG 163
+ + F LV+++ Y L L S+ FA YI+EN +LK R
Sbjct: 268 IDIKRNNCFSLVATEASYNNGESWLESFLEYLESNIDFAIKYINENMPKLKVR------- 320
Query: 164 LEKAGISCLKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPG 223
K WVD L S+ EL +V K+ ++ G+S G
Sbjct: 321 ---------KPEGTYLLWVDFSALGLSDE-----ELESILVQKGKVALNQGNSFGIGGSG 366
Query: 224 WFRV---CFANMSEDTL 237
+ R+ C +M E+ L
Sbjct: 367 YQRINLACPRSMLEEAL 383
>pdb|3B46|A Chain A, Crystal Structure Of Bna3p, A Putative Kynurenine
Aminotransferase From Saccharomyces Cerevisiae
pdb|3B46|B Chain B, Crystal Structure Of Bna3p, A Putative Kynurenine
Aminotransferase From Saccharomyces Cerevisiae
Length = 447
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 49/107 (45%), Gaps = 8/107 (7%)
Query: 11 KVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEIL 70
K K V++ P NP+G +R EL L N + N+ +ISDE+Y F+ F I +
Sbjct: 201 KTKAVIINTPHNPIGKVFTREELTTLGNICVKHNVVIISDEVYEHLYFTD-SFTRIATL- 258
Query: 71 KDRNCENTEVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDTVVAAATK 117
+ E+ V S G+R+G + S + +++ A K
Sbjct: 259 ------SPEIGQLTLTVGSAGXSFAATGWRIGWVLSLNAELLSYAAK 299
>pdb|1LKC|A Chain A, Crystal Structure Of L-Threonine-O-3-Phosphate
Decarboxylase From Salmonella Enterica
pdb|1LC5|A Chain A, Crystal Structure Of L-Threonine-O-3-Phosphate
Decarboxylase From S. Enterica In Its Apo State
pdb|1LC7|A Chain A, Crystal Structure Of L-Threonine-O-3-Phosphate
Decarboxylase From S. Enterica Complexed With A
Substrate
pdb|1LC8|A Chain A, Crystal Structure Of L-Threonine-O-3-Phosphate
Decarboxylase From S. Enterica Complexed With Its
Reaction Intermediate
Length = 364
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/144 (22%), Positives = 62/144 (43%), Gaps = 14/144 (9%)
Query: 15 VLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRN 74
+ + P+NP G R L + + NI+LI DE + + GF+ ++
Sbjct: 150 LFLCTPNNPTGLLPERPLLQAIADRCKSLNINLILDEAFIDFIPHETGFIPALK------ 203
Query: 75 CENTEVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDTVVAAATKMSSFGLVSSQTQYLLSA 134
+N +W ++ SL+K +PG R+G + ++DD +A + V++
Sbjct: 204 -DNPHIW----VLRSLTKFYAIPGLRLGYLVNSDDAAMARMRRQQMPWSVNALAALAGEV 258
Query: 135 LLSDKKFAQ---NYISENKKRLKQ 155
L D + Q +++ E R Q
Sbjct: 259 ALQDSAWQQATWHWLREEGARFYQ 282
>pdb|3ASA|A Chain A, Crystal Structure Of Apo-Ll-Diaminopimelate
Aminotransferase From Chlamydia Trachomatis
pdb|3ASB|A Chain A, Crystal Structure Of Plp-Bound Ll-Diaminopimelate
Aminotransferase From Chlamydia Trachomatis
Length = 400
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 50/101 (49%), Gaps = 12/101 (11%)
Query: 3 QLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPG 62
+ + H+ + + + +P+NP GT +++++L +V++ E I ++ D YS T S P
Sbjct: 157 EFPEDTHIDI--LCLCSPNNPTGTVLNKDQLRAIVHYAIEHEILILFDAAYS-TFISDPS 213
Query: 63 FV-SIMEILKDRNCENTEVWNRVHIVYSLSKDLGLPGFRVG 102
SI EI R C + S SK LG G R+G
Sbjct: 214 LPKSIFEIPDARFCAIE--------INSFSKPLGFAGIRLG 246
>pdb|3F6T|A Chain A, Crystal Structure Of Aspartate Aminotransferase (E.C.
2.6.1.1) (Yp_194538.1) From Lactobacillus Acidophilus
Ncfm At 2.15 A Resolution
pdb|3F6T|B Chain B, Crystal Structure Of Aspartate Aminotransferase (E.C.
2.6.1.1) (Yp_194538.1) From Lactobacillus Acidophilus
Ncfm At 2.15 A Resolution
Length = 533
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 34/102 (33%), Positives = 48/102 (47%), Gaps = 16/102 (15%)
Query: 12 VKGVLVTNPSNPLGTTMSRNELNLLVNFITEKN--IHLISDEIYSGTVFSSPGFVSIMEI 69
+K ++V NP+NP N LN + + EKN + +ISDE+Y V P F SI +
Sbjct: 245 IKALIVVNPTNPTSKEFDTNALNAIKQAV-EKNPKLXIISDEVYGAFV---PNFKSIYSV 300
Query: 70 LKDRNCENTEVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDTV 111
V +VYS S G G+R+G I N+ V
Sbjct: 301 ----------VPYNTXLVYSYSXLFGCTGWRLGVIALNEKNV 332
>pdb|3P1T|A Chain A, Crystal Structure Of A Putative Aminotransferase
(Bpsl1724) From Burkholderia Pseudomallei K96243 At 2.60
A Resolution
pdb|3P1T|B Chain B, Crystal Structure Of A Putative Aminotransferase
(Bpsl1724) From Burkholderia Pseudomallei K96243 At 2.60
A Resolution
pdb|3P1T|C Chain C, Crystal Structure Of A Putative Aminotransferase
(Bpsl1724) From Burkholderia Pseudomallei K96243 At 2.60
A Resolution
pdb|3P1T|D Chain D, Crystal Structure Of A Putative Aminotransferase
(Bpsl1724) From Burkholderia Pseudomallei K96243 At 2.60
A Resolution
Length = 337
Score = 45.4 bits (106), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 46/163 (28%), Positives = 72/163 (44%), Gaps = 25/163 (15%)
Query: 15 VLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSG-TVFSSPGFVSIMEILKDR 73
V++ NPSNP G +S EL+ L ++ L+ DE Y + F + G
Sbjct: 139 VVLANPSNPTGQALSAGELDQL----RQRAGKLLIDETYVDYSSFRARGLAY-------- 186
Query: 74 NCENTEVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDTVVAAATKMSSFGLVSSQTQYLLS 133
EN V+ S SK GL G R+GA++ + ++AA + F V + + L
Sbjct: 187 -GENELVFR------SFSKSYGLAGLRLGALFGPSE-LIAAXKRKQWFCNVGTLDLHALE 238
Query: 134 ALLSDKKFAQNYISENKKRLKQRHRKLVSGLEKAGISCLKSNA 176
A L + + + +I+ K L QR R++ L G S A
Sbjct: 239 AALDNDRAREAHIA---KTLAQR-RRVADALRGLGYRVASSEA 277
>pdb|3OP7|A Chain A, Crystal Structure Of A Plp-Dependent Aminotransferase
(Zp_03625122.1) From Streptococcus Suis 89-1591 At 1.70
A Resolution
pdb|3P6K|A Chain A, Crystal Structure Of A Plp-Dependent Aminotransferase
(Zp_03625122.1) From Streptococcus Suis 89-1591 At 2.07
A Resolution
pdb|3P6K|B Chain B, Crystal Structure Of A Plp-Dependent Aminotransferase
(Zp_03625122.1) From Streptococcus Suis 89-1591 At 2.07
A Resolution
Length = 375
Score = 45.1 bits (105), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 45/95 (47%), Gaps = 13/95 (13%)
Query: 13 KGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKD 72
K + + N +NP G R L LV +E +++SDE+Y FS SI+
Sbjct: 156 KXICINNANNPTGAVXDRTYLEELVEIASEVGAYILSDEVYRS--FSELDVPSII----- 208
Query: 73 RNCENTEVWNRVHIVYSLSKDLGLPGFRVGAIYSN 107
EV+++ V SLS LPG R+G + +N
Sbjct: 209 ------EVYDKGIAVNSLSXTYSLPGIRIGWVAAN 237
>pdb|3EZS|A Chain A, Crystal Structure Of Aminotransferase Aspb (Np_207418.1)
From Helicobacter Pylori 26695 At 2.19 A Resolution
pdb|3EZS|B Chain B, Crystal Structure Of Aminotransferase Aspb (Np_207418.1)
From Helicobacter Pylori 26695 At 2.19 A Resolution
Length = 376
Score = 44.7 bits (104), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 50/101 (49%), Gaps = 4/101 (3%)
Query: 4 LAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGF 63
L +K +V V++ +P+NP G T+S EL V + + LI+DE YS ++P
Sbjct: 147 LNEKELQEVDLVILNSPNNPTGRTLSLEELISWVKLALKHDFILINDECYSEIYENTPP- 205
Query: 64 VSIMEILKDRNCENTEVWNRVHIVYSLSKDLGLPGFRVGAI 104
+L+ E + V +++SLSK PG R G I
Sbjct: 206 ---PSLLEACXLAGNEAFKNVLVIHSLSKRSSAPGLRSGFI 243
>pdb|1U08|A Chain A, Crystal Structure And Reactivity Of Ybdl From Escherichia
Coli Identify A Methionine Aminotransferase Function.
pdb|1U08|B Chain B, Crystal Structure And Reactivity Of Ybdl From Escherichia
Coli Identify A Methionine Aminotransferase Function
Length = 386
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 55/241 (22%), Positives = 102/241 (42%), Gaps = 25/241 (10%)
Query: 11 KVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEIL 70
+ + V++ P NP T + + L I I +ISDE+Y FS G S++
Sbjct: 163 RTRLVILNTPHNPSATVWQQADFAALWQAIAGHEIFVISDEVYEHINFSQQGHASVL--- 219
Query: 71 KDRNCENTEVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDTVVAAATKMSSFGL---VSSQ 127
+ ++ R V S K + G++VG Y ++A + L V++
Sbjct: 220 -----AHPQLRERAVAVSSFGKTYHMTGWKVG--YCVAPAPISAEIRKVHQYLTFSVNTP 272
Query: 128 TQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEKAGISCLKSNAGLFCWVDMRHL 187
Q L+ +L + ++Y++ +Q+ LV+ L ++ + L F VD
Sbjct: 273 AQLALADMLRAEP--EHYLA-LPDFYRQKRDILVNALNESRLEILPCEGTYFLLVDY--- 326
Query: 188 LSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEP---GWFRVCFANMSEDTLKLSMQRL 244
S+ + ++E + + + + P S C +P R+CFA E TL + +RL
Sbjct: 327 -SAVSTLDDVEFCQWLTQEHGVAAIP-LSVFCADPFPHKLIRLCFAK-KESTLLAAAERL 383
Query: 245 K 245
+
Sbjct: 384 R 384
>pdb|3TCM|A Chain A, Crystal Structure Of Alanine Aminotransferase From Hordeum
Vulgare
pdb|3TCM|B Chain B, Crystal Structure Of Alanine Aminotransferase From Hordeum
Vulgare
Length = 500
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 60/266 (22%), Positives = 109/266 (40%), Gaps = 29/266 (10%)
Query: 5 AQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVF-SSPGF 63
A+ R + V+ ++V NP NP G ++ +V F + + L++DE+Y ++ + F
Sbjct: 231 ARSRGINVRALVVINPGNPTGQVLAEENQYDIVKFCKNEGLVLLADEVYQENIYVDNKKF 290
Query: 64 VSIMEILKDRNCENTEVWNRVHIVYSLSKD-LGLPGFRVG--AIYSNDDTVVAAATKMSS 120
S +I++ ++ + S+SK G G R G I V K++S
Sbjct: 291 HSFKKIVRSLGYGEEDL--PLVSYQSVSKGYYGECGKRGGYFEITGFSAPVREQIYKIAS 348
Query: 121 FGLVSSQTQYLLSALL------SDKKFAQNYISENKKRLKQRHRKLVSGLEKA-----GI 169
L S+ T +L++L+ SD+ +A +Y +E L R+ LE A GI
Sbjct: 349 VNLCSNITGQILASLVMNPPKASDESYA-SYKAEKDGILASLARR-AKALEHAFNKLEGI 406
Query: 170 SCLKSNAGLFCWVDMRHLLSSNTFEAEMELWK--------KIVYDVKLNISPGSSCHCTE 221
+C ++ ++ + + L EA K +++ + + PGS
Sbjct: 407 TCNEAEGAMYVFPQI--CLPQKAIEAAKAANKAPDAFYALRLLESTGIVVVPGSGFGQVP 464
Query: 222 PGWFRVCFANMSEDTLKLSMQRLKAF 247
W C ED + + R F
Sbjct: 465 GTWHFRCTILPQEDKIPAVISRFTVF 490
>pdb|3DYD|A Chain A, Human Tyrosine Aminotransferase
pdb|3DYD|B Chain B, Human Tyrosine Aminotransferase
Length = 427
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 56/253 (22%), Positives = 110/253 (43%), Gaps = 35/253 (13%)
Query: 11 KVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEIL 70
K ++V NPSNP G+ S+ L ++ + + +++DEIY VFS + + +
Sbjct: 191 KTACLIVNNPSNPCGSVFSKRHLQKILAVAARQCVPILADEIYGDMVFSDCKYEPLATLS 250
Query: 71 KDRNCENTEVWNRVHIVY--SLSKDLGLPGFRVGAIYSND------DTVVAAATKMSSFG 122
D V I+ L+K +PG+R+G I +D + + K+S
Sbjct: 251 TD-----------VPILSCGGLAKRWLVPGWRLGWILIHDRRDIFGNEIRDGLVKLSQRI 299
Query: 123 L-VSSQTQYLLSALL--SDKKFAQNYISENKKRLKQRHRKLVSGLEKAGISCLKSNAGLF 179
L + Q L ++L + +F N +S K + L + G+ ++ + ++
Sbjct: 300 LGPCTIVQGALKSILCRTPGEFYHNTLSFLKSNADLCYGALAA---IPGLRPVRPSGAMY 356
Query: 180 CWV--DMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTE-PGWFRVCFANMSEDT 236
V +M H FE ++E +++V + ++ P + C E P + RV + E
Sbjct: 357 LMVGIEMEHF---PEFENDVEFTERLVAEQSVHCLPAT---CFEYPNFIRVVI-TVPEVM 409
Query: 237 LKLSMQRLKAFVD 249
+ + R++ F +
Sbjct: 410 MLEACSRIQEFCE 422
>pdb|1WST|A Chain A, Crystal Structure Of Multiple Substrate Aminotransferase
(Msat) From Thermococcus Profundus
Length = 417
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 47/229 (20%), Positives = 92/229 (40%), Gaps = 22/229 (9%)
Query: 21 SNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEV 80
NP G TMS + L+ E + ++ D YS +S I ++ +
Sbjct: 193 QNPAGVTMSVDRRKKLLELANEYDFLIVEDGPYSELRYSGEPTPPI---------KHFDD 243
Query: 81 WNRVHIVYSLSKDLGLPGFRVGAIYSNDDTVVAAATKMSSFGLVSSQTQYLLSALLSDKK 140
+ RV + + SK L PGFR+G + ++ + S L ++ ++ +
Sbjct: 244 YGRVIYLGTFSKILA-PGFRIGWVAAHPHLIRKMEIAKQSIDLCTNTFGQAIAWKYVENG 302
Query: 141 FAQNYISENKKRLKQRHRKLVSGLEK---AGISCLKSNAGLFCWVDMRHLLSSNTFEAEM 197
+ +I + + K R ++ LE+ G+ K G+F V + + + E
Sbjct: 303 YLDEHIPKIIEFYKPRRDAMLEALEEYMPEGVEWTKPEGGMFVRVTLPEGIDTKLM-MER 361
Query: 198 ELWKKIVYDVKLNISPGSS--CHCTEPGWFRVCFANMSEDTLKLSMQRL 244
+ K + Y PG + H + R+ F + E+T++ ++RL
Sbjct: 362 AVAKGVAY------VPGEAFFVHRDKKNTMRLNFTYVPEETIREGVRRL 404
>pdb|3IHJ|A Chain A, Human Alanine Aminotransferase 2 In Complex With Plp
Length = 498
Score = 42.0 bits (97), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 30/54 (55%)
Query: 7 KRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSS 60
K H K + + NP NP G SR + +++F E+ + L++DE+Y V+S
Sbjct: 231 KDHCDPKVLCIINPGNPTGQVQSRKCIEDVIHFAWEEKLFLLADEVYQDNVYSP 284
>pdb|3PDX|A Chain A, Crystal Structural Of Mouse Tyrosine Aminotransferase
Length = 402
Score = 41.6 bits (96), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 53/250 (21%), Positives = 108/250 (43%), Gaps = 29/250 (11%)
Query: 11 KVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEIL 70
K ++V NPSNP G+ S+ L ++ + + +++DEIY VFS + + +
Sbjct: 168 KTACLVVNNPSNPCGSVFSKRHLQKILAVAERQCVPILADEIYGDMVFSDCKYEPMATL- 226
Query: 71 KDRNCENTEVWNRVHIVYSLSKDLGLPGFRVGAIYSND------DTVVAAATKMSSFGL- 123
+T V + L+ +PG+R+G I +D + + K+S L
Sbjct: 227 ------STNV--PILSCGGLAXRWLVPGWRLGWILIHDRRDIFGNEIRDGLVKLSQRILG 278
Query: 124 VSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEK-AGISCLKSNAGLFCWV 182
+ Q L ++L ++ Q + + LK L G+ ++ + ++ V
Sbjct: 279 PCTIVQGALKSIL--QRTPQEFYQDTLSFLKSNADLCYGALSAIPGLQPVRPSGAMYLMV 336
Query: 183 --DMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTE-PGWFRVCFANMSEDTLKL 239
+M H FE ++E ++++ + ++ P + C E P +FRV + E +
Sbjct: 337 GIEMEHF---PEFENDVEFTERLIAEQSVHCLPAT---CFEYPNFFRVVI-TVPEVMMLE 389
Query: 240 SMQRLKAFVD 249
+ R++ F +
Sbjct: 390 ACSRIQEFCE 399
>pdb|2O0R|A Chain A, The Three-Dimensional Structure Of
N-Succinyldiaminopimelate Aminotransferase From
Mycobacterium Tuberculosis
pdb|2O0R|B Chain B, The Three-Dimensional Structure Of
N-Succinyldiaminopimelate Aminotransferase From
Mycobacterium Tuberculosis
Length = 411
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/196 (20%), Positives = 79/196 (40%), Gaps = 16/196 (8%)
Query: 11 KVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEIL 70
+ + +++ +P NP G +S EL + N+ +I+DE+Y VF + +
Sbjct: 160 RTRALIINSPHNPTGAVLSATELAAIAEIAVAANLVVITDEVYEHLVFDHARHLPLAGF- 218
Query: 71 KDRNCENTEVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDTVV---AAATKMSSFGLVSSQ 127
D E T + +++ + G+++G + + AA +S G Q
Sbjct: 219 -DGMAERTITISSAAXMFNCT------GWKIGWACGPAELIAGVRAAKQYLSYVGGAPFQ 271
Query: 128 TQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEKAGISCLKSNAGLFCWVDMRHL 187
L+ D +++ + L+ R +L +GL + G + S F D R L
Sbjct: 272 PAVALALDTEDA-----WVAALRNSLRARRDRLAAGLTEIGFAVHDSYGTYFLCADPRPL 326
Query: 188 LSSNTFEAEMELWKKI 203
++ E L +K+
Sbjct: 327 GYDDSTEFCAALPEKV 342
>pdb|2ZC0|A Chain A, Crystal Structure Of An Archaeal Alanine:glyoxylate
Aminotransferase
pdb|2ZC0|B Chain B, Crystal Structure Of An Archaeal Alanine:glyoxylate
Aminotransferase
pdb|2ZC0|C Chain C, Crystal Structure Of An Archaeal Alanine:glyoxylate
Aminotransferase
pdb|2ZC0|D Chain D, Crystal Structure Of An Archaeal Alanine:glyoxylate
Aminotransferase
Length = 407
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 52/248 (20%), Positives = 102/248 (41%), Gaps = 27/248 (10%)
Query: 8 RHLKVKG----VLVTNPS--NPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSP 61
+ LK KG ++ T P+ NP+G TMS L+ ++ ++ +I D Y+ +
Sbjct: 166 KELKAKGQKVKLIYTIPTGQNPMGVTMSMERRKALLEIASKYDLLIIEDTAYNFMRYEGG 225
Query: 62 GFVSIMEILKDRNCENTEVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDTVVAAATKMSSF 121
V + + +N RV + +LSK LG GFR+G I + + + +
Sbjct: 226 DIVPL------KALDNE---GRVIVAGTLSKVLGT-GFRIGWIIAEGEILKKVLMQKQPI 275
Query: 122 GLVSSQ-TQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEK--AGISCLKSNAGL 178
+ +QY+ L F + ++ K++ ++ LE K AG+
Sbjct: 276 DFCAPAISQYIALEYLKRGYFEKYHLEGALLGYKEKRDIMLKALENHLPNAEFTKPIAGM 335
Query: 179 FCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPG--WFRVCFANMSEDT 236
F + +F E+ + +V + PG + E G R+ F+ S++
Sbjct: 336 FVMFFLPEGADGISFANELMEREGVV------VVPGKPFYTDESGKNAIRLNFSRPSKEE 389
Query: 237 LKLSMQRL 244
+ + +++L
Sbjct: 390 IPIGIKKL 397
>pdb|3IF2|A Chain A, Crystal Structure Of Putative Amino-Acid Aminotransferase
(Yp_265399.1) From Psychrobacter Arcticum 273-4 At 2.50
A Resolution
pdb|3IF2|B Chain B, Crystal Structure Of Putative Amino-Acid Aminotransferase
(Yp_265399.1) From Psychrobacter Arcticum 273-4 At 2.50
A Resolution
Length = 444
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 41/184 (22%), Positives = 77/184 (41%), Gaps = 21/184 (11%)
Query: 11 KVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEIL 70
++ + + P+NP G ++ E L +I LI D Y F +I+
Sbjct: 206 RIGAICCSRPTNPTGNVLTDEEXAHLAEIAKRYDIPLIIDNAYGXP------FPNIIYSD 259
Query: 71 KDRNCENTEVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDTVVAAATKMSSFGLVSSQ-TQ 129
N +N + + +SLSK +GLPG R G I ++ + A + + L ++
Sbjct: 260 AHLNWDNNTI-----LCFSLSK-IGLPGXRTGIIVADAKVIEAVSAXNAVVNLAPTRFGA 313
Query: 130 YLLSALLSDKKFAQNYISENK-KRLKQRHRKLVSGLEKAGIS-----CLKSNAGLFCWVD 183
+ + L+++ + Q +S+N+ K Q+ L L K + K +F W+
Sbjct: 314 AIATPLVANDRIKQ--LSDNEIKPFYQKQATLAVKLLKQALGDYPLXIHKPEGAIFLWLW 371
Query: 184 MRHL 187
+ L
Sbjct: 372 FKDL 375
>pdb|1VP4|A Chain A, Crystal Structure Of A Putative Aminotransferase (Tm1131)
From Thermotoga Maritima Msb8 At 1.82 A Resolution
pdb|1VP4|B Chain B, Crystal Structure Of A Putative Aminotransferase (Tm1131)
From Thermotoga Maritima Msb8 At 1.82 A Resolution
Length = 425
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/174 (21%), Positives = 73/174 (41%), Gaps = 15/174 (8%)
Query: 16 LVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNC 75
+V+N NP G T S + LV + ++ ++ D+ Y + ++ I K
Sbjct: 193 VVSNFHNPAGVTTSLEKRKALVEIAEKYDLFIVEDDPYGALRYEGE---TVDPIFKIGGP 249
Query: 76 ENTEVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDTVVAAATKMSSFGLVSSQTQYLLSAL 135
E RV ++ + SK L PG R+G + + + + S L S + L+A
Sbjct: 250 E------RVVLLNTFSKVLA-PGLRIGXVAGSKEFIRKIVQAKQSADLCSPAITHRLAAR 302
Query: 136 LSDKKFAQNYISENKKRLKQRHRKLVSGLEK-----AGISCLKSNAGLFCWVDM 184
++ + + +++ ++ LE+ G+ +KS GLF W+ +
Sbjct: 303 YLERYDLLEQLKPTIELYRRKRTVXLNALEEYFSDIPGVKWVKSEGGLFIWLTL 356
>pdb|3FTB|A Chain A, The Crystal Structure Of The Histidinol-Phosphate
Aminotransferase From Clostridium Acetobutylicum
pdb|3FTB|B Chain B, The Crystal Structure Of The Histidinol-Phosphate
Aminotransferase From Clostridium Acetobutylicum
pdb|3FTB|D Chain D, The Crystal Structure Of The Histidinol-Phosphate
Aminotransferase From Clostridium Acetobutylicum
pdb|3FTB|E Chain E, The Crystal Structure Of The Histidinol-Phosphate
Aminotransferase From Clostridium Acetobutylicum
Length = 361
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/157 (21%), Positives = 69/157 (43%), Gaps = 14/157 (8%)
Query: 12 VKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILK 71
V V++ NP+NP G +++ + ++ EK +I DE + F+ S + +K
Sbjct: 145 VDSVIIGNPNNPNGGLINKEKFIHVLKLAEEKKKTIIIDEAF--IEFTGDPSSSFVGEIK 202
Query: 72 DRNCENTEVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDTVVAAATKMSSFGLVSSQTQYL 131
+ +C + I+ +++K +PG R G +N+ + A + ++ +
Sbjct: 203 NYSC--------LFIIRAMTKFFAMPGIRFGYGITNNKEIAAKIKAKQNPWNINCFAEMA 254
Query: 132 LSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEKAG 168
L D NYI E+ +K+ ++ + L K G
Sbjct: 255 AINCLKD----TNYIEESLLWIKKERKRFIEELNKIG 287
>pdb|2ZY3|A Chain A, Dodecameric L-Aspartate Beta-Decarboxylase
pdb|2ZY3|B Chain B, Dodecameric L-Aspartate Beta-Decarboxylase
pdb|2ZY3|C Chain C, Dodecameric L-Aspartate Beta-Decarboxylase
pdb|2ZY3|D Chain D, Dodecameric L-Aspartate Beta-Decarboxylase
pdb|2ZY3|E Chain E, Dodecameric L-Aspartate Beta-Decarboxylase
pdb|2ZY3|F Chain F, Dodecameric L-Aspartate Beta-Decarboxylase
pdb|2ZY4|A Chain A, Dodecameric L-Aspartate Beta-Decarboxylase
pdb|2ZY4|B Chain B, Dodecameric L-Aspartate Beta-Decarboxylase
pdb|2ZY4|C Chain C, Dodecameric L-Aspartate Beta-Decarboxylase
pdb|2ZY4|D Chain D, Dodecameric L-Aspartate Beta-Decarboxylase
pdb|2ZY4|E Chain E, Dodecameric L-Aspartate Beta-Decarboxylase
pdb|2ZY4|F Chain F, Dodecameric L-Aspartate Beta-Decarboxylase
Length = 546
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 53/111 (47%), Gaps = 15/111 (13%)
Query: 3 QLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNFITE--KNIHLISDEIYSGTVFSS 60
+L + + +K NPSNP M + L + N + E ++ +++D++Y GT +
Sbjct: 237 ELDKLKDPAIKIFFCVNPSNPPSVKMDQRSLERVRNIVAEHRPDLMILTDDVY-GTF--A 293
Query: 61 PGFVSIMEILKDRNCENTEVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDTV 111
F S+ I ENT +VYS SK G G+R+G + ++ V
Sbjct: 294 DDFQSLFAICP----ENT------LLVYSFSKYFGATGWRLGVVAAHQQNV 334
>pdb|2ZY5|A Chain A, R487a Mutant Of L-Aspartate Beta-Decarboxylase
pdb|2ZY5|B Chain B, R487a Mutant Of L-Aspartate Beta-Decarboxylase
pdb|2ZY5|C Chain C, R487a Mutant Of L-Aspartate Beta-Decarboxylase
pdb|2ZY5|D Chain D, R487a Mutant Of L-Aspartate Beta-Decarboxylase
pdb|2ZY5|E Chain E, R487a Mutant Of L-Aspartate Beta-Decarboxylase
pdb|2ZY5|F Chain F, R487a Mutant Of L-Aspartate Beta-Decarboxylase
Length = 546
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 53/111 (47%), Gaps = 15/111 (13%)
Query: 3 QLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNFITE--KNIHLISDEIYSGTVFSS 60
+L + + +K NPSNP M + L + N + E ++ +++D++Y GT +
Sbjct: 237 ELDKLKDPAIKIFFCVNPSNPPSVKMDQRSLERVRNIVAEHRPDLMILTDDVY-GTF--A 293
Query: 61 PGFVSIMEILKDRNCENTEVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDTV 111
F S+ I ENT +VYS SK G G+R+G + ++ V
Sbjct: 294 DDFQSLFAICP----ENT------LLVYSFSKYFGATGWRLGVVAAHQQNV 334
>pdb|2ZY2|A Chain A, Dodecameric L-Aspartate Beta-Decarboxylase
Length = 544
Score = 38.1 bits (87), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 53/111 (47%), Gaps = 15/111 (13%)
Query: 3 QLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEK--NIHLISDEIYSGTVFSS 60
+L + + VK NPSNP M + L+ + + E+ ++ +++D++Y GT
Sbjct: 236 ELDKLKDPDVKIFFCVNPSNPPSVKMDQRSLDRVRAIVAEQRPDLLILTDDVY-GTFADE 294
Query: 61 PGFVSIMEILKDRNCENTEVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDTV 111
F S+ + C + +VYS SK G G+R+G I ++ D V
Sbjct: 295 --FQSLFSV-----CPRNTL-----LVYSFSKYFGATGWRLGVIAAHKDNV 333
>pdb|3FKD|A Chain A, The Crystal Structure Of L-Threonine-O-3-Phosphate
Decarboxylase From Porphyromonas Gingivalis
pdb|3FKD|B Chain B, The Crystal Structure Of L-Threonine-O-3-Phosphate
Decarboxylase From Porphyromonas Gingivalis
pdb|3FKD|C Chain C, The Crystal Structure Of L-Threonine-O-3-Phosphate
Decarboxylase From Porphyromonas Gingivalis
pdb|3FKD|D Chain D, The Crystal Structure Of L-Threonine-O-3-Phosphate
Decarboxylase From Porphyromonas Gingivalis
Length = 350
Score = 38.1 bits (87), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 52/117 (44%), Gaps = 16/117 (13%)
Query: 19 NPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENT 78
NP+NP G + R E+ L+N + + D+ Y F++ + +I +N
Sbjct: 137 NPNNPDGRLLQRTEILRLLN--DHPDTTFVLDQSY--VSFTTEEVIRPADIKGRKN---- 188
Query: 79 EVWNRVHIVYSLSKDLGLPGFRVGAIYSNDD---TVVAAATKMSSFGLVSSQTQYLL 132
+ VYS S G+PG R+G I +N D V A +T + L +++L
Sbjct: 189 -----LVXVYSFSHAYGIPGLRIGYIVANKDFXKRVAAFSTPWAVNALAIEAAKFIL 240
>pdb|3T32|A Chain A, Crystal Structure Of A Putative C-S Lyase From Bacillus
Anthracis
pdb|3T32|B Chain B, Crystal Structure Of A Putative C-S Lyase From Bacillus
Anthracis
Length = 383
Score = 38.1 bits (87), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 36/65 (55%), Gaps = 3/65 (4%)
Query: 12 VKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSS---PGFVSIME 68
VK L+ +P NP+G + EL L + T+ N+ +++DEI+S +++ F S+ E
Sbjct: 157 VKLXLLCSPHNPIGRVWKKEELTKLGSLCTKYNVIVVADEIHSDIIYADHTHTPFASLSE 216
Query: 69 ILKDR 73
L R
Sbjct: 217 ELAAR 221
>pdb|4FL0|A Chain A, Crystal Structure Of Ald1 From Arabidopsis Thaliana
pdb|4FL0|B Chain B, Crystal Structure Of Ald1 From Arabidopsis Thaliana
Length = 456
Score = 37.7 bits (86), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 66/264 (25%), Positives = 108/264 (40%), Gaps = 43/264 (16%)
Query: 15 VLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVF-SSPGFVSIMEILKDR 73
+ +P+NP G SR +L+ LV+F +I D Y+ + SP SI EI R
Sbjct: 216 IFFCSPNNPTGYVASRKQLHQLVDFAKTNGSIIIFDSAYAAFIEDGSP--RSIYEIPGAR 273
Query: 74 NCENTEVWNRVHIVYSLSKDLGLPGFRVG-------AIYSNDDTVVAAATKM--SSFGLV 124
EV V S SK G G R+G +YSN ++ ++ +SF
Sbjct: 274 -----EVAIEVS---SFSKFAGFTGVRLGWSIIPDELLYSNGFPIINDFHRIVTTSFNGA 325
Query: 125 SSQTQY-----LLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEKAGISCLKSNAGLF 179
S+ Q L S L + + NY EN+K L+ L G+ +
Sbjct: 326 SNIAQAGGLACLSSGGLKEIRSVNNYYKENRK-------ILMDTLVSLGLKVYGGVNAPY 378
Query: 180 CWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKL 239
WV H S ++ +++ +I+ + + PGS + R+ + ++
Sbjct: 379 LWV---HFKGSKSW----DVFNEILENTHIITVPGSGFGPGGEEYLRISGFGRRDHIVEA 431
Query: 240 SMQRLKAFVDSIT---TTLHNQSN 260
S +RL+ F ++ T T L + SN
Sbjct: 432 S-KRLQNFFNTRTKHFTYLSSTSN 454
>pdb|3FDD|A Chain A, The Crystal Structure Of The Pseudomonas Dacunhae
Aspartate-Beta- Decarboxylase Reveals A Novel Oligomeric
Assembly For A Pyridoxal-5- Phosphate Dependent Enzyme
Length = 533
Score = 37.0 bits (84), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 52/111 (46%), Gaps = 15/111 (13%)
Query: 3 QLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNFITE--KNIHLISDEIYSGTVFSS 60
+L + + +K NPSNP M L + + E ++ +++D++Y GT +
Sbjct: 237 ELDKLKDPAIKIFFCVNPSNPPSVKMDERSLERVRKIVAEHRPDLMILTDDVY-GTF--A 293
Query: 61 PGFVSIMEILKDRNCENTEVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDTV 111
GF S+ I C + +VYS SK G G+R+G + ++ + +
Sbjct: 294 DGFQSLFAI-----CPANTL-----LVYSFSKYFGATGWRLGVVAAHKENI 334
>pdb|3FDB|A Chain A, Crystal Structure Of A Putative Plp-Dependent
Beta-Cystathionase (Aecd, Dip1736) From Corynebacterium
Diphtheriae At 1.99 A Resolution
Length = 377
Score = 36.6 bits (83), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 39/193 (20%), Positives = 71/193 (36%), Gaps = 45/193 (23%)
Query: 12 VKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILK 71
+ +L+ NP NPLG + LN L + + ++ DEI++ VF G ++ +
Sbjct: 151 ARSILLCNPYNPLGXVFAPEWLNELCDLAHRYDARVLVDEIHAPLVFD--GQHTVAAGVS 208
Query: 72 DRNCE-------NTEVWNR-----VHIVYSLSKDLG-----LPGFRVGAIYSNDDTVVAA 114
D + WN I++S D P + GA
Sbjct: 209 DTAASVCITITAPSXAWNIAGLKCAQIIFSNPSDAEHWQQLSPVIKDGA----------- 257
Query: 115 ATKMSSFGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEK--AGISCL 172
S+ GL++++ Y ++ +++++ LK H L+ + K G
Sbjct: 258 ----STLGLIAAEAAY---------RYGTDFLNQEVAYLKNNHDFLLHEIPKRIPGAKIT 304
Query: 173 KSNAGLFCWVDMR 185
A W+D R
Sbjct: 305 PXQATYLXWIDFR 317
>pdb|3DZZ|A Chain A, Crystal Structure Of A Putative Plp-Dependent
Aminotransferase (Lbul_1103) From Lactobacillus
Delbrueckii Subsp. At 1.61 A Resolution
pdb|3DZZ|B Chain B, Crystal Structure Of A Putative Plp-Dependent
Aminotransferase (Lbul_1103) From Lactobacillus
Delbrueckii Subsp. At 1.61 A Resolution
Length = 391
Score = 35.8 bits (81), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 40/179 (22%), Positives = 67/179 (37%), Gaps = 11/179 (6%)
Query: 12 VKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILK 71
V+ + NP NP+G S E+ + + + LISDEI+ V + +
Sbjct: 161 VRXXVFCNPHNPIGYAWSEEEVKRIAELCAKHQVLLISDEIHGDLVLTDEDITPAFTVDW 220
Query: 72 DRNCENTEVWNRVHIVYSLSKDLGLPGFRVG-AIYSNDDTVVAAATKMSSFGLVSSQTQY 130
D N V + S S L AI N D + A A + +
Sbjct: 221 DAK-------NWVVSLISPSXTFNLAALHAACAIIPNPD-LRARAEESFFLAGIGEPNLL 272
Query: 131 LLSALLSDKKFAQNYISENKKRLKQR--HRKLVSGLEKAGISCLKSNAGLFCWVDMRHL 187
+ A ++ + +++ E K+ L+ + + E + L SNA WVD+ L
Sbjct: 273 AIPAAIAAYEEGHDWLRELKQVLRDNFAYAREFLAKEVPEVKVLDSNASYLAWVDISAL 331
>pdb|3B1C|A Chain A, Crystal Structure Of Betac-S Lyase From Streptococcus
Anginosus: Internal Aldimine Form
pdb|3B1C|B Chain B, Crystal Structure Of Betac-S Lyase From Streptococcus
Anginosus: Internal Aldimine Form
pdb|3B1C|C Chain C, Crystal Structure Of Betac-S Lyase From Streptococcus
Anginosus: Internal Aldimine Form
pdb|3B1C|D Chain D, Crystal Structure Of Betac-S Lyase From Streptococcus
Anginosus: Internal Aldimine Form
pdb|3B1D|A Chain A, Crystal Structure Of Betac-S Lyase From Streptococcus
Anginosus In Complex With L-Serine: External Aldimine
Form
pdb|3B1D|B Chain B, Crystal Structure Of Betac-S Lyase From Streptococcus
Anginosus In Complex With L-Serine: External Aldimine
Form
pdb|3B1D|C Chain C, Crystal Structure Of Betac-S Lyase From Streptococcus
Anginosus In Complex With L-Serine: External Aldimine
Form
pdb|3B1D|D Chain D, Crystal Structure Of Betac-S Lyase From Streptococcus
Anginosus In Complex With L-Serine: External Aldimine
Form
pdb|3B1E|A Chain A, Crystal Structure Of Betac-S Lyase From Streptococcus
Anginosus In Complex With L-Serine: Alpha-Aminoacrylate
Form
pdb|3B1E|B Chain B, Crystal Structure Of Betac-S Lyase From Streptococcus
Anginosus In Complex With L-Serine: Alpha-Aminoacrylate
Form
pdb|3B1E|C Chain C, Crystal Structure Of Betac-S Lyase From Streptococcus
Anginosus In Complex With L-Serine: Alpha-Aminoacrylate
Form
pdb|3B1E|D Chain D, Crystal Structure Of Betac-S Lyase From Streptococcus
Anginosus In Complex With L-Serine: Alpha-Aminoacrylate
Form
Length = 392
Score = 34.7 bits (78), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 36/161 (22%), Positives = 65/161 (40%), Gaps = 25/161 (15%)
Query: 12 VKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILK 71
VK L+ NP NP G R L + + + ++ L+SDEI+ VS
Sbjct: 165 VKLYLLCNPHNPGGRVWEREVLEQIGHLCQKHHVILVSDEIHQDLTLFGHEHVSF----- 219
Query: 72 DRNCENTEVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDTVVAA---------ATKMSSFG 122
N + + + ++ S +K + G + + T+ A ++SS G
Sbjct: 220 --NTVSPDFKDFALVLSSATKTFNIAGTKNSYAIIENPTLCAQFKHQQLVNNHHEVSSLG 277
Query: 123 LVSSQTQY---------LLSALLSDKKFAQNYISENKKRLK 154
++++T Y L + L + +FA Y ++ RLK
Sbjct: 278 YIATETAYRYGKPWLVALKAVLEENIQFAVEYFAQEAPRLK 318
>pdb|1C7N|A Chain A, Crystal Structure Of Cystalysin From Treponema Denticola
Contains A Pyridoxal 5'-Phosphate Cofactor
pdb|1C7N|B Chain B, Crystal Structure Of Cystalysin From Treponema Denticola
Contains A Pyridoxal 5'-Phosphate Cofactor
pdb|1C7N|C Chain C, Crystal Structure Of Cystalysin From Treponema Denticola
Contains A Pyridoxal 5'-Phosphate Cofactor
pdb|1C7N|D Chain D, Crystal Structure Of Cystalysin From Treponema Denticola
Contains A Pyridoxal 5'-Phosphate Cofactor
pdb|1C7N|E Chain E, Crystal Structure Of Cystalysin From Treponema Denticola
Contains A Pyridoxal 5'-Phosphate Cofactor
pdb|1C7N|F Chain F, Crystal Structure Of Cystalysin From Treponema Denticola
Contains A Pyridoxal 5'-Phosphate Cofactor
pdb|1C7N|G Chain G, Crystal Structure Of Cystalysin From Treponema Denticola
Contains A Pyridoxal 5'-Phosphate Cofactor
pdb|1C7N|H Chain H, Crystal Structure Of Cystalysin From Treponema Denticola
Contains A Pyridoxal 5'-Phosphate Cofactor
pdb|1C7O|A Chain A, Crystal Structure Of Cystalysin From Treponema Denticola
Contains A Pyridoxal
5'-Phosphate-L-Aminoethoxyvinylglycine Complex
pdb|1C7O|B Chain B, Crystal Structure Of Cystalysin From Treponema Denticola
Contains A Pyridoxal
5'-Phosphate-L-Aminoethoxyvinylglycine Complex
pdb|1C7O|C Chain C, Crystal Structure Of Cystalysin From Treponema Denticola
Contains A Pyridoxal
5'-Phosphate-L-Aminoethoxyvinylglycine Complex
pdb|1C7O|D Chain D, Crystal Structure Of Cystalysin From Treponema Denticola
Contains A Pyridoxal
5'-Phosphate-L-Aminoethoxyvinylglycine Complex
pdb|1C7O|E Chain E, Crystal Structure Of Cystalysin From Treponema Denticola
Contains A Pyridoxal
5'-Phosphate-L-Aminoethoxyvinylglycine Complex
pdb|1C7O|F Chain F, Crystal Structure Of Cystalysin From Treponema Denticola
Contains A Pyridoxal
5'-Phosphate-L-Aminoethoxyvinylglycine Complex
pdb|1C7O|G Chain G, Crystal Structure Of Cystalysin From Treponema Denticola
Contains A Pyridoxal
5'-Phosphate-L-Aminoethoxyvinylglycine Complex
pdb|1C7O|H Chain H, Crystal Structure Of Cystalysin From Treponema Denticola
Contains A Pyridoxal
5'-Phosphate-L-Aminoethoxyvinylglycine Complex
Length = 399
Score = 34.3 bits (77), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 35/66 (53%), Gaps = 7/66 (10%)
Query: 13 KGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPG-----FVSIM 67
K +L +P NP+G ++EL + + + + ++ L SDEI+ + PG F SI
Sbjct: 166 KALLFCSPHNPVGRVWKKDELQKIKDIVLKSDLMLWSDEIHFDLIM--PGYEHTVFQSID 223
Query: 68 EILKDR 73
E L D+
Sbjct: 224 EQLADK 229
>pdb|1D2F|A Chain A, X-Ray Structure Of Maly From Escherichia Coli: A
Pyridoxal-5'- Phosphate-Dependent Enzyme Acting As A
Modulator In Mal Gene Expression
pdb|1D2F|B Chain B, X-Ray Structure Of Maly From Escherichia Coli: A
Pyridoxal-5'- Phosphate-Dependent Enzyme Acting As A
Modulator In Mal Gene Expression
Length = 390
Score = 34.3 bits (77), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 14/49 (28%), Positives = 27/49 (55%)
Query: 11 KVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFS 59
+ K +L+ +P NP G + +EL ++ + + +ISDEI+ V+
Sbjct: 162 ECKIMLLCSPQNPTGKVWTCDELEIMADLCERHGVRVISDEIHMDMVWG 210
>pdb|3QGU|A Chain A, L,L-Diaminopimelate Aminotransferase From Chalmydomonas
Reinhardtii
pdb|3QGU|B Chain B, L,L-Diaminopimelate Aminotransferase From Chalmydomonas
Reinhardtii
Length = 449
Score = 32.3 bits (72), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 53/241 (21%), Positives = 93/241 (38%), Gaps = 29/241 (12%)
Query: 15 VLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRN 74
+ +P+NP G +R +L LVNF + L+ D Y+ + + +I EI
Sbjct: 213 IFFCSPNNPTGAAATRAQLTELVNFARKNGSILVYDAAYALYISNPDCPKTIYEIPGA-- 270
Query: 75 CENTEVWNRVHI-VYSLSKDLGLPGFRVGAI-------YSNDDTVVAAATKM--SSFGLV 124
+ V I S SK G G R+G Y+N + V A ++ + F
Sbjct: 271 -------DEVAIETCSFSKYAGFTGVRLGWTVVPKALKYANGEPVHADWNRVMTTCFNGA 323
Query: 125 SSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEKAGISCLKSNAGLFCWVDM 184
S+ Q A L + + ++ K K+ + L + + G S + + WV
Sbjct: 324 SNIVQAGGLACLQPEGLKE--MNAMIKFYKENAQILKTTFTEMGFSVYGGDDAPYIWVGF 381
Query: 185 RHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKLSMQRL 244
S + F +I+ + +PGS G+ R E+ L+ +++R
Sbjct: 382 PGKPSWDVF-------AEILERCNIVTTPGSGYGPAGEGFVRASAFGSRENILE-AVRRF 433
Query: 245 K 245
K
Sbjct: 434 K 434
>pdb|3NRA|A Chain A, Crystal Structure Of An Aspartate Aminotransferase
(Yp_354942.1) From Rhodobacter Sphaeroides 2.4.1 At 2.15
A Resolution
pdb|3NRA|B Chain B, Crystal Structure Of An Aspartate Aminotransferase
(Yp_354942.1) From Rhodobacter Sphaeroides 2.4.1 At 2.15
A Resolution
Length = 407
Score = 32.0 bits (71), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 12/39 (30%), Positives = 20/39 (51%)
Query: 16 LVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYS 54
L +NP+NP G S E+ + +I+D++YS
Sbjct: 184 LFSNPNNPAGVVYSAEEIGQIAALAARYGATVIADQLYS 222
>pdb|2DOU|A Chain A, Probable N-Succinyldiaminopimelate Aminotransferase
(Ttha0342) From Thermus Thermophilus Hb8
pdb|2DOU|B Chain B, Probable N-Succinyldiaminopimelate Aminotransferase
(Ttha0342) From Thermus Thermophilus Hb8
Length = 376
Score = 29.6 bits (65), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 36/175 (20%), Positives = 71/175 (40%), Gaps = 20/175 (11%)
Query: 11 KVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFS--SPGFVSIME 68
+ K +L+ P+NP G + + + LI D Y V+ +P +++
Sbjct: 158 EAKVLLLNYPNNPTGAVADWGYFEEALGLARKHGLWLIHDNPYVDQVYEGEAPSPLALPG 217
Query: 69 ILKDRNCENTEVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDTV--VAAATKMSSFGLVSS 126
K+R E ++SLSK L GFR+G +++ + + + F +
Sbjct: 218 A-KERVVE----------LFSLSKSYNLAGFRLGFALGSEEALARLERVKGVIDFNQYAG 266
Query: 127 QTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEKAGISCLKSNAGLFCW 181
+ + AL + K+ + Y + ++R + L K +S L A ++ W
Sbjct: 267 VLRMGVEALKTPKEVVRGY----ARVYRERALGMAEAL-KGVLSLLPPRATMYLW 316
>pdb|1JR2|A Chain A, Structure Of Uroporphyrinogen Iii Synthase
pdb|1JR2|B Chain B, Structure Of Uroporphyrinogen Iii Synthase
Length = 286
Score = 29.6 bits (65), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Query: 51 EIYSGTVFSSPGFVSIMEILKDRNCENTEVWNR 83
E Y G +F+SP V E+ ++N TEVW R
Sbjct: 75 EDYGGLIFTSPRAVEAAELCLEQN-NKTEVWER 106
>pdb|3HDO|A Chain A, Crystal Structure Of A Histidinol-Phosphate
Aminotransferase From Geobacter Metallireducens
pdb|3HDO|B Chain B, Crystal Structure Of A Histidinol-Phosphate
Aminotransferase From Geobacter Metallireducens
Length = 360
Score = 29.6 bits (65), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 40/164 (24%), Positives = 66/164 (40%), Gaps = 21/164 (12%)
Query: 13 KGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKD 72
K +T P+ PLG + ++ L L+ DE Y+ S+ +E++
Sbjct: 151 KVFFLTTPNAPLGPSFPLEYIDELARRCAGX---LVLDETYAEFAESN-----ALELV-- 200
Query: 73 RNCENTEVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDTVVAAATKMSSFGLVSSQTQYLL 132
R EN V + +LSK L G R+G + + V+AA K+ + Q
Sbjct: 201 RRHEN------VVVTRTLSKSYSLAGXRIGLAIARPE-VIAALDKIRDHYNLDRLAQAAC 253
Query: 133 SALLSDKKFAQNYISENKKRLKQRHRKLVSGLEKAGISCLKSNA 176
A L D Q Y+SE +R+++ + L G + S
Sbjct: 254 VAALRD----QAYLSECCRRIRETREWFTTELRSIGYDVIPSQG 293
>pdb|1UU1|A Chain A, Complex Of Histidinol-Phosphate Aminotransferase (Hisc)
From Thermotoga Maritima (Apo-Form)
pdb|1UU1|B Chain B, Complex Of Histidinol-Phosphate Aminotransferase (Hisc)
From Thermotoga Maritima (Apo-Form)
pdb|1UU1|C Chain C, Complex Of Histidinol-Phosphate Aminotransferase (Hisc)
From Thermotoga Maritima (Apo-Form)
pdb|1UU1|D Chain D, Complex Of Histidinol-Phosphate Aminotransferase (Hisc)
From Thermotoga Maritima (Apo-Form)
pdb|1UU2|A Chain A, Histidinol-Phosphate Aminotransferase (Hisc) From
Thermotoga Maritima (Apo-Form)
pdb|1UU2|B Chain B, Histidinol-Phosphate Aminotransferase (Hisc) From
Thermotoga Maritima (Apo-Form)
pdb|1UU0|A Chain A, Histidinol-Phosphate Aminotransferase (Hisc) From
Thermotoga Maritima (Apo-Form)
pdb|1UU0|B Chain B, Histidinol-Phosphate Aminotransferase (Hisc) From
Thermotoga Maritima (Apo-Form)
pdb|1UU0|C Chain C, Histidinol-Phosphate Aminotransferase (Hisc) From
Thermotoga Maritima (Apo-Form)
pdb|1UU0|D Chain D, Histidinol-Phosphate Aminotransferase (Hisc) From
Thermotoga Maritima (Apo-Form)
Length = 335
Score = 29.3 bits (64), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 40/173 (23%), Positives = 67/173 (38%), Gaps = 29/173 (16%)
Query: 15 VLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRN 74
V + NP+NP G R E+ I + + DE Y F +V + +
Sbjct: 142 VFIPNPNNPTGHVFEREEIER----ILKTGAFVALDEAYYE--FHGESYVDFL-----KK 190
Query: 75 CENTEVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDTVVAAATKMSSFGLVSSQTQYLLSA 134
EN + ++ + SK L RVG + +++ + A F VS +Q
Sbjct: 191 YEN------LAVIRTFSKAFSLAAQRVGYVVASEKFIDAYNRVRLPFN-VSYVSQMFAKV 243
Query: 135 LLSDKKFAQN---YISENKKRLKQRHRKLVSGLEKAGISCLKSNAGLFCWVDM 184
L ++ + +I E ++R+K S L + G S G F +V M
Sbjct: 244 ALDHREIFEERTKFIVEERERMK-------SALREMGYRITDSR-GNFVFVFM 288
>pdb|2Z20|A Chain A, Crystal Structure Of Ll-diaminopimelate Aminotransferase
From Arabidopsis Thaliana
pdb|2Z20|B Chain B, Crystal Structure Of Ll-diaminopimelate Aminotransferase
From Arabidopsis Thaliana
Length = 432
Score = 29.3 bits (64), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 14/56 (25%), Positives = 25/56 (44%), Gaps = 8/56 (14%)
Query: 15 VLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSG--------TVFSSPG 62
+ +P+NP G +R +L LV F + ++ D Y+ ++F PG
Sbjct: 202 IFFCSPNNPTGAAATREQLTQLVEFAKKNGSIIVYDSAYAXYXSDDNPRSIFEIPG 257
>pdb|2F8J|A Chain A, Crystal Structure Of Histidinol-phosphate Aminotransferase
(ec 2.6.1.9) (imidazole Acetol-phosphate Transferase)
(tm1040) From Thermotoga Maritima At 2.40 A Resolution
pdb|2F8J|B Chain B, Crystal Structure Of Histidinol-phosphate Aminotransferase
(ec 2.6.1.9) (imidazole Acetol-phosphate Transferase)
(tm1040) From Thermotoga Maritima At 2.40 A Resolution
pdb|2F8J|C Chain C, Crystal Structure Of Histidinol-phosphate Aminotransferase
(ec 2.6.1.9) (imidazole Acetol-phosphate Transferase)
(tm1040) From Thermotoga Maritima At 2.40 A Resolution
pdb|2F8J|D Chain D, Crystal Structure Of Histidinol-phosphate Aminotransferase
(ec 2.6.1.9) (imidazole Acetol-phosphate Transferase)
(tm1040) From Thermotoga Maritima At 2.40 A Resolution
Length = 347
Score = 29.3 bits (64), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 40/173 (23%), Positives = 67/173 (38%), Gaps = 29/173 (16%)
Query: 15 VLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRN 74
V + NP+NP G R E+ I + + DE Y F +V + +
Sbjct: 154 VFIPNPNNPTGHVFEREEIER----ILKTGAFVALDEAYYE--FHGESYVDFL-----KK 202
Query: 75 CENTEVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDTVVAAATKMSSFGLVSSQTQYLLSA 134
EN + ++ + SK L RVG + +++ + A F VS +Q
Sbjct: 203 YEN------LAVIRTFSKAFSLAAQRVGYVVASEKFIDAYNRVRLPFN-VSYVSQMFAKV 255
Query: 135 LLSDKKFAQN---YISENKKRLKQRHRKLVSGLEKAGISCLKSNAGLFCWVDM 184
L ++ + +I E ++R+K S L + G S G F +V M
Sbjct: 256 ALDHREIFEERTKFIVEERERMK-------SALREMGYRITDSR-GNFVFVFM 300
>pdb|3EIA|A Chain A, Crystal Structure Of K270q Variant Of Ll-Diaminopimelate
Aminotransferase From Arabidopsis Thaliana Complexed
With L-Glu: External Aldimine Form
pdb|3EIA|B Chain B, Crystal Structure Of K270q Variant Of Ll-Diaminopimelate
Aminotransferase From Arabidopsis Thaliana Complexed
With L-Glu: External Aldimine Form
Length = 432
Score = 28.9 bits (63), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 11/40 (27%), Positives = 20/40 (50%)
Query: 15 VLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYS 54
+ +P+NP G +R +L LV F + ++ D Y+
Sbjct: 202 IFFCSPNNPTGAAATREQLTQLVEFAKKNGSIIVYDSAYA 241
>pdb|2Z1Z|A Chain A, Crystal Structure Of Ll-diaminopimelate Aminotransferase
From Arabidopsis Thaliana Complexed With L-malate Ion
pdb|2Z1Z|B Chain B, Crystal Structure Of Ll-diaminopimelate Aminotransferase
From Arabidopsis Thaliana Complexed With L-malate Ion
pdb|3EI5|A Chain A, Crystal Structure Of Ll-Diaminopimelate Aminotransferase
From Arabidopsis Thaliana Complexed With Plp-Glu: An
External Aldimine Mimic
pdb|3EI5|B Chain B, Crystal Structure Of Ll-Diaminopimelate Aminotransferase
From Arabidopsis Thaliana Complexed With Plp-Glu: An
External Aldimine Mimic
pdb|3EI6|A Chain A, Crystal Structure Of Ll-Diaminopimelate Aminotransferase
From Arabidopsis Thaliana Complexed With Plp-Dap: An
External Aldimine Mimic
pdb|3EI6|B Chain B, Crystal Structure Of Ll-Diaminopimelate Aminotransferase
From Arabidopsis Thaliana Complexed With Plp-Dap: An
External Aldimine Mimic
pdb|3EI7|A Chain A, Crystal Structure Of Apo-Ll-Diaminopimelate
Aminotransferase From Arabidopsis Thaliana (No Plp)
pdb|3EI7|B Chain B, Crystal Structure Of Apo-Ll-Diaminopimelate
Aminotransferase From Arabidopsis Thaliana (No Plp)
Length = 432
Score = 28.9 bits (63), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 11/40 (27%), Positives = 20/40 (50%)
Query: 15 VLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYS 54
+ +P+NP G +R +L LV F + ++ D Y+
Sbjct: 202 IFFCSPNNPTGAAATREQLTQLVEFAKKNGSIIVYDSAYA 241
>pdb|3EI8|A Chain A, Crystal Structure Of K270n Variant Of Ll-Diaminopimelate
Aminotransferase From Arabidopsis Thaliana Complexed
With Ll-Dap: External Aldimine Form
pdb|3EI8|B Chain B, Crystal Structure Of K270n Variant Of Ll-Diaminopimelate
Aminotransferase From Arabidopsis Thaliana Complexed
With Ll-Dap: External Aldimine Form
pdb|3EI9|A Chain A, Crystal Structure Of K270n Variant Of Ll-diaminopimelate
Aminotransferase From Arabidopsis Thaliana Complexed
With L-glu: External Aldimine Form
pdb|3EI9|B Chain B, Crystal Structure Of K270n Variant Of Ll-diaminopimelate
Aminotransferase From Arabidopsis Thaliana Complexed
With L-glu: External Aldimine Form
pdb|3EIB|A Chain A, Crystal Structure Of K270n Variant Of Ll-Diaminopimelate
Aminotransferase From Arabidopsis Thaliana
pdb|3EIB|B Chain B, Crystal Structure Of K270n Variant Of Ll-Diaminopimelate
Aminotransferase From Arabidopsis Thaliana
Length = 432
Score = 28.9 bits (63), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 11/40 (27%), Positives = 20/40 (50%)
Query: 15 VLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYS 54
+ +P+NP G +R +L LV F + ++ D Y+
Sbjct: 202 IFFCSPNNPTGAAATREQLTQLVEFAKKNGSIIVYDSAYA 241
>pdb|2UVA|G Chain G, Crystal Structure Of Fatty Acid Synthase From Thermomyces
Lanuginosus At 3.1 Angstrom Resolution. This File
Contains The Beta Subunits Of The Fatty Acid Synthase.
The Entire Crystal Structure Consists Of One
Heterododecameric Fatty Acid Synthase And Is Described In
Remark 400
pdb|2UVA|H Chain H, Crystal Structure Of Fatty Acid Synthase From Thermomyces
Lanuginosus At 3.1 Angstrom Resolution. This File
Contains The Beta Subunits Of The Fatty Acid Synthase.
The Entire Crystal Structure Consists Of One
Heterododecameric Fatty Acid Synthase And Is Described In
Remark 400
pdb|2UVA|I Chain I, Crystal Structure Of Fatty Acid Synthase From Thermomyces
Lanuginosus At 3.1 Angstrom Resolution. This File
Contains The Beta Subunits Of The Fatty Acid Synthase.
The Entire Crystal Structure Consists Of One
Heterododecameric Fatty Acid Synthase And Is Described In
Remark 400
pdb|2UVA|J Chain J, Crystal Structure Of Fatty Acid Synthase From Thermomyces
Lanuginosus At 3.1 Angstrom Resolution. This File
Contains The Beta Subunits Of The Fatty Acid Synthase.
The Entire Crystal Structure Consists Of One
Heterododecameric Fatty Acid Synthase And Is Described In
Remark 400
pdb|2UVA|K Chain K, Crystal Structure Of Fatty Acid Synthase From Thermomyces
Lanuginosus At 3.1 Angstrom Resolution. This File
Contains The Beta Subunits Of The Fatty Acid Synthase.
The Entire Crystal Structure Consists Of One
Heterododecameric Fatty Acid Synthase And Is Described In
Remark 400
pdb|2UVA|L Chain L, Crystal Structure Of Fatty Acid Synthase From Thermomyces
Lanuginosus At 3.1 Angstrom Resolution. This File
Contains The Beta Subunits Of The Fatty Acid Synthase.
The Entire Crystal Structure Consists Of One
Heterododecameric Fatty Acid Synthase And Is Described In
Remark 400
pdb|2UVC|G Chain G, Crystal Structure Of Fatty Acid Synthase Complexed With
Nadp+ From Thermomyces Lanuginosus At 3.1 Angstrom
Resolution. This File Contains The Beta Subunits Of The
Fatty Acid Synthase. The Entire Crystal Structure
Consists Of One Heterododecameric Fatty Acid Synthase And
Is Described In Remark 400
pdb|2UVC|H Chain H, Crystal Structure Of Fatty Acid Synthase Complexed With
Nadp+ From Thermomyces Lanuginosus At 3.1 Angstrom
Resolution. This File Contains The Beta Subunits Of The
Fatty Acid Synthase. The Entire Crystal Structure
Consists Of One Heterododecameric Fatty Acid Synthase And
Is Described In Remark 400
pdb|2UVC|I Chain I, Crystal Structure Of Fatty Acid Synthase Complexed With
Nadp+ From Thermomyces Lanuginosus At 3.1 Angstrom
Resolution. This File Contains The Beta Subunits Of The
Fatty Acid Synthase. The Entire Crystal Structure
Consists Of One Heterododecameric Fatty Acid Synthase And
Is Described In Remark 400
pdb|2UVC|J Chain J, Crystal Structure Of Fatty Acid Synthase Complexed With
Nadp+ From Thermomyces Lanuginosus At 3.1 Angstrom
Resolution. This File Contains The Beta Subunits Of The
Fatty Acid Synthase. The Entire Crystal Structure
Consists Of One Heterododecameric Fatty Acid Synthase And
Is Described In Remark 400
pdb|2UVC|K Chain K, Crystal Structure Of Fatty Acid Synthase Complexed With
Nadp+ From Thermomyces Lanuginosus At 3.1 Angstrom
Resolution. This File Contains The Beta Subunits Of The
Fatty Acid Synthase. The Entire Crystal Structure
Consists Of One Heterododecameric Fatty Acid Synthase And
Is Described In Remark 400
pdb|2UVC|L Chain L, Crystal Structure Of Fatty Acid Synthase Complexed With
Nadp+ From Thermomyces Lanuginosus At 3.1 Angstrom
Resolution. This File Contains The Beta Subunits Of The
Fatty Acid Synthase. The Entire Crystal Structure
Consists Of One Heterododecameric Fatty Acid Synthase And
Is Described In Remark 400
Length = 2060
Score = 28.9 bits (63), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 21/89 (23%), Positives = 34/89 (38%), Gaps = 19/89 (21%)
Query: 15 VLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSS-------------- 60
V +TNP +P T +S E + + I L+ D + T+F
Sbjct: 1186 VEITNPDDPAKTVISVREPSQSAKLVKTVEIKLVGDNEIALTLFEGRTAEGGVVPLTFRF 1245
Query: 61 -----PGFVSIMEILKDRNCENTEVWNRV 84
G+ I E+++ RN E + RV
Sbjct: 1246 TYHPEAGYAPIREVMEGRNDRIKEFYYRV 1274
>pdb|2R7B|A Chain A, Crystal Structure Of The Phosphoinositide-Dependent
Kinase- 1 (Pdk-1)catalytic Domain Bound To A
Dibenzonaphthyridine Inhibitor
pdb|3ION|A Chain A, Pdk1 In Complex With Compound 8h
Length = 312
Score = 28.9 bits (63), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 18/70 (25%), Positives = 34/70 (48%), Gaps = 2/70 (2%)
Query: 36 LVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVYSLSKDLG 95
+ +F T K + S + + + + +VS + + C+++++W I+Y L G
Sbjct: 174 ITDFGTAKVLSPESKQARANSFVGTAQYVSPELLTEKSACKSSDLWALGCIIYQLVA--G 231
Query: 96 LPGFRVGAIY 105
LP FR G Y
Sbjct: 232 LPPFRAGNEY 241
>pdb|3G0T|A Chain A, Crystal Structure Of Putative Aspartate Aminotransferase
(Np_905498.1) From Porphyromonas Gingivalis W83 At 1.75
A Resolution
pdb|3G0T|B Chain B, Crystal Structure Of Putative Aspartate Aminotransferase
(Np_905498.1) From Porphyromonas Gingivalis W83 At 1.75
A Resolution
Length = 437
Score = 28.9 bits (63), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 15/52 (28%), Positives = 26/52 (50%), Gaps = 4/52 (7%)
Query: 15 VLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVF----SSPG 62
++ +NP+NP + EL ++ T+ ++ +I D Y G F S PG
Sbjct: 186 IIYSNPNNPTWQCXTDEELRIIGELATKHDVIVIEDLAYFGXDFRKDYSHPG 237
>pdb|3NC3|A Chain A, Cyp134a1 Structure With A Closed Substrate Binding Loop
pdb|3NC3|B Chain B, Cyp134a1 Structure With A Closed Substrate Binding Loop
pdb|3NC5|A Chain A, Cyp134a1 Structure With An Open Substrate Binding Loop
pdb|3NC5|B Chain B, Cyp134a1 Structure With An Open Substrate Binding Loop
pdb|3NC6|A Chain A, Cyp134a1 1-Phenylimidazole Bound Structure
pdb|3NC6|B Chain B, Cyp134a1 1-Phenylimidazole Bound Structure
pdb|3NC7|A Chain A, Cyp134a1 2-Phenylimidazole Bound Structure
pdb|3NC7|B Chain B, Cyp134a1 2-Phenylimidazole Bound Structure
Length = 441
Score = 28.5 bits (62), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 28/48 (58%), Gaps = 2/48 (4%)
Query: 22 NPLGTTMSRNELNLLVNFITEK--NIHLISDEIYSGTVFSSPGFVSIM 67
N +GT ++NE+ ++ N + +K NI L D Y+ + + G VS++
Sbjct: 388 NCVGTAFAKNEIEIVANIVLDKMRNIRLEEDFCYAESGLYTRGPVSLL 435
>pdb|3NAX|A Chain A, Pdk1 In Complex With Inhibitor Mp7
Length = 311
Score = 28.1 bits (61), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 18/70 (25%), Positives = 34/70 (48%), Gaps = 2/70 (2%)
Query: 36 LVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVYSLSKDLG 95
+ +F T K + S + + + + +VS + + C+++++W I+Y L G
Sbjct: 170 ITDFGTAKVLSPESKQARANSFVGTAQYVSPELLTEKSACKSSDLWALGCIIYQLVA--G 227
Query: 96 LPGFRVGAIY 105
LP FR G Y
Sbjct: 228 LPPFRAGNEY 237
>pdb|3GET|A Chain A, Crystal Structure Of Putative Histidinol-Phosphate
Aminotransferase (Np_281508.1) From Campylobacter Jejuni
At 2.01 A Resolution
pdb|3GET|B Chain B, Crystal Structure Of Putative Histidinol-Phosphate
Aminotransferase (Np_281508.1) From Campylobacter Jejuni
At 2.01 A Resolution
Length = 365
Score = 28.1 bits (61), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 26/112 (23%), Positives = 50/112 (44%), Gaps = 9/112 (8%)
Query: 3 QLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPG 62
+L + ++K + + P+NPLG + +E + + E + +I D Y+
Sbjct: 145 KLYETHKDEIKLIFLCLPNNPLGECLDASEATEFIKGVNEDCLVVI-DAAYN-------E 196
Query: 63 FVSIMEILKD-RNCENTEVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDTVVA 113
F S + K CE + ++ V + + S GL G R+G +N + + A
Sbjct: 197 FASFKDSKKHLEPCELIKEFDNVLYLGTFSXLYGLGGLRIGYGIANANIISA 248
>pdb|2BLF|A Chain A, Sulfite Dehydrogenase From Starkeya Novella
pdb|2BPB|A Chain A, Sulfite Dehydrogenase From Starkeya Novella
Length = 373
Score = 28.1 bits (61), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 21/44 (47%), Gaps = 8/44 (18%)
Query: 181 WVDMRHLLSSNTFEAEME-LWKKIVYDVKLNISPGSSCHCTEPG 223
WV +HL + E + W K Y + P ++C CTEPG
Sbjct: 213 WV--KHLNEITVIDKEFDGFWMKTAYRI-----PDNACACTEPG 249
>pdb|2CA4|A Chain A, Sulfite Dehydrogenase From Starkeya Novella Mutant
Length = 373
Score = 28.1 bits (61), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 21/44 (47%), Gaps = 8/44 (18%)
Query: 181 WVDMRHLLSSNTFEAEME-LWKKIVYDVKLNISPGSSCHCTEPG 223
WV +HL + E + W K Y + P ++C CTEPG
Sbjct: 213 WV--KHLNEITVIDKEFDGFWMKTAYRI-----PDNACACTEPG 249
>pdb|2CA3|A Chain A, Sulfite Dehydrogenase From Starkeya Novella R55m Mutant
Length = 373
Score = 28.1 bits (61), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 21/44 (47%), Gaps = 8/44 (18%)
Query: 181 WVDMRHLLSSNTFEAEME-LWKKIVYDVKLNISPGSSCHCTEPG 223
WV +HL + E + W K Y + P ++C CTEPG
Sbjct: 213 WV--KHLNEITVIDKEFDGFWMKTAYRI-----PDNACACTEPG 249
>pdb|3CMU|A Chain A, Mechanism Of Homologous Recombination From The Reca-
SsdnaDSDNA STRUCTURES
Length = 2050
Score = 27.7 bits (60), Expect = 7.0, Method: Composition-based stats.
Identities = 32/128 (25%), Positives = 59/128 (46%), Gaps = 20/128 (15%)
Query: 3 QLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPG 62
+ A++ KV+ +L++NP++ G+T S ++ I E ++ + G + G
Sbjct: 638 ETAKEIEKKVRELLLSNPNSTTGSTGSMGHTTGAMSAIDENKQKALAAAL--GQIEKQFG 695
Query: 63 FVSIMEILKDRNCENTEVWNRVHIVYSLSKDL-----GLPGFRVGAIYSNDDT------- 110
SIM + +DR+ + + SLS D+ GLP R+ IY + +
Sbjct: 696 KGSIMRLGEDRSMDVETISTG-----SLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTL 750
Query: 111 -VVAAATK 117
V+AAA +
Sbjct: 751 QVIAAAQR 758
>pdb|3CMV|A Chain A, Mechanism Of Homologous Recombination From The Reca-
SsdnaDSDNA STRUCTURES
pdb|3CMV|B Chain B, Mechanism Of Homologous Recombination From The Reca-
SsdnaDSDNA STRUCTURES
pdb|3CMV|C Chain C, Mechanism Of Homologous Recombination From The Reca-
SsdnaDSDNA STRUCTURES
pdb|3CMV|D Chain D, Mechanism Of Homologous Recombination From The Reca-
SsdnaDSDNA STRUCTURES
pdb|3CMV|E Chain E, Mechanism Of Homologous Recombination From The Reca-
SsdnaDSDNA STRUCTURES
pdb|3CMV|F Chain F, Mechanism Of Homologous Recombination From The Reca-
SsdnaDSDNA STRUCTURES
pdb|3CMV|G Chain G, Mechanism Of Homologous Recombination From The Reca-
SsdnaDSDNA STRUCTURES
pdb|3CMV|H Chain H, Mechanism Of Homologous Recombination From The Reca-
SsdnaDSDNA STRUCTURES
Length = 1357
Score = 27.3 bits (59), Expect = 9.3, Method: Composition-based stats.
Identities = 32/128 (25%), Positives = 59/128 (46%), Gaps = 20/128 (15%)
Query: 3 QLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPG 62
+ A++ KV+ +L++NP++ G+T S ++ I E ++ + G + G
Sbjct: 638 ETAKEIEKKVRELLLSNPNSTTGSTGSMGHTTGSMSAIDENKQKALAAAL--GQIEKQFG 695
Query: 63 FVSIMEILKDRNCENTEVWNRVHIVYSLSKDL-----GLPGFRVGAIYSNDDT------- 110
SIM + +DR+ + + SLS D+ GLP R+ IY + +
Sbjct: 696 KGSIMRLGEDRSMDVETISTG-----SLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTL 750
Query: 111 -VVAAATK 117
V+AAA +
Sbjct: 751 QVIAAAQR 758
>pdb|3CMT|A Chain A, Mechanism Of Homologous Recombination From The Reca-
SsdnaDSDNA STRUCTURES
pdb|3CMT|D Chain D, Mechanism Of Homologous Recombination From The Reca-
SsdnaDSDNA STRUCTURES
pdb|3CMW|A Chain A, Mechanism Of Homologous Recombination From The Reca-
SsdnaDSDNA STRUCTURES
pdb|3CMW|C Chain C, Mechanism Of Homologous Recombination From The Reca-
SsdnaDSDNA STRUCTURES
pdb|3CMX|A Chain A, Mechanism Of Homologous Recombination From The Reca-
SsdnaDSDNA STRUCTURES
pdb|3CMX|D Chain D, Mechanism Of Homologous Recombination From The Reca-
SsdnaDSDNA STRUCTURES
Length = 1706
Score = 27.3 bits (59), Expect = 9.3, Method: Composition-based stats.
Identities = 32/128 (25%), Positives = 59/128 (46%), Gaps = 20/128 (15%)
Query: 3 QLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPG 62
+ A++ KV+ +L++NP++ G+T S ++ I E ++ + G + G
Sbjct: 638 ETAKEIEKKVRELLLSNPNSTTGSTGSMGHTTGSMSAIDENKQKALAAAL--GQIEKQFG 695
Query: 63 FVSIMEILKDRNCENTEVWNRVHIVYSLSKDL-----GLPGFRVGAIYSNDDT------- 110
SIM + +DR+ + + SLS D+ GLP R+ IY + +
Sbjct: 696 KGSIMRLGEDRSMDVETISTG-----SLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTL 750
Query: 111 -VVAAATK 117
V+AAA +
Sbjct: 751 QVIAAAQR 758
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.132 0.389
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,991,846
Number of Sequences: 62578
Number of extensions: 297767
Number of successful extensions: 940
Number of sequences better than 100.0: 96
Number of HSP's better than 100.0 without gapping: 62
Number of HSP's successfully gapped in prelim test: 34
Number of HSP's that attempted gapping in prelim test: 837
Number of HSP's gapped (non-prelim): 106
length of query: 289
length of database: 14,973,337
effective HSP length: 98
effective length of query: 191
effective length of database: 8,840,693
effective search space: 1688572363
effective search space used: 1688572363
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)