Query 044773
Match_columns 289
No_of_seqs 113 out of 1428
Neff 9.3
Searched_HMMs 46136
Date Fri Mar 29 06:38:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044773.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/044773hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02450 1-aminocyclopropane-1 100.0 9.8E-44 2.1E-48 329.8 31.5 278 9-286 189-466 (468)
2 PLN02376 1-aminocyclopropane-1 100.0 1.2E-40 2.6E-45 310.4 31.3 243 9-253 197-441 (496)
3 COG0436 Aspartate/tyrosine/aro 100.0 1.6E-40 3.4E-45 301.0 26.2 226 10-251 162-392 (393)
4 PLN02607 1-aminocyclopropane-1 100.0 1.3E-39 2.7E-44 300.3 30.3 243 9-253 198-440 (447)
5 KOG0256 1-aminocyclopropane-1- 100.0 4.4E-39 9.6E-44 278.1 27.1 249 1-253 216-464 (471)
6 PRK06855 aminotransferase; Val 100.0 6.9E-37 1.5E-41 282.0 28.9 238 2-250 162-429 (433)
7 PRK09148 aminotransferase; Val 100.0 1.5E-36 3.3E-41 277.7 28.1 241 3-259 156-399 (405)
8 COG1168 MalY Bifunctional PLP- 100.0 1.6E-36 3.5E-41 261.6 24.6 233 2-251 150-387 (388)
9 PRK08636 aspartate aminotransf 100.0 3.4E-36 7.4E-41 275.4 26.9 232 3-250 166-400 (403)
10 PRK07590 L,L-diaminopimelate a 100.0 5E-36 1.1E-40 274.8 25.4 222 10-248 175-409 (409)
11 PRK07681 aspartate aminotransf 100.0 7.8E-36 1.7E-40 272.7 26.0 218 10-246 165-384 (399)
12 PRK06207 aspartate aminotransf 100.0 1.7E-35 3.7E-40 270.7 26.5 224 10-251 177-403 (405)
13 PLN00175 aminotransferase fami 100.0 2.3E-35 4.9E-40 270.4 25.9 222 10-249 186-412 (413)
14 PRK07309 aromatic amino acid a 100.0 6.4E-35 1.4E-39 266.0 27.6 232 2-251 156-389 (391)
15 PRK07366 succinyldiaminopimela 100.0 1.6E-35 3.6E-40 269.6 23.6 221 10-248 164-388 (388)
16 PRK08068 transaminase; Reviewe 100.0 4.6E-35 9.9E-40 266.8 25.0 219 10-247 166-386 (389)
17 PRK07682 hypothetical protein; 100.0 2.8E-35 6E-40 267.3 23.0 223 10-251 153-377 (378)
18 TIGR03540 DapC_direct LL-diami 100.0 6E-35 1.3E-39 265.5 25.2 218 10-246 163-382 (383)
19 TIGR03542 DAPAT_plant LL-diami 100.0 6.8E-35 1.5E-39 266.7 25.7 221 10-247 172-401 (402)
20 PRK06348 aspartate aminotransf 100.0 1.2E-34 2.5E-39 263.7 26.2 218 10-247 161-382 (384)
21 PRK05957 aspartate aminotransf 100.0 1.7E-34 3.6E-39 263.0 27.1 224 10-251 159-386 (389)
22 PTZ00377 alanine aminotransfer 100.0 2.4E-34 5.2E-39 268.5 28.0 237 11-253 218-478 (481)
23 PRK12414 putative aminotransfe 100.0 1E-34 2.2E-39 264.0 24.7 219 10-246 161-383 (384)
24 PRK08175 aminotransferase; Val 100.0 1.8E-34 4E-39 263.3 25.5 236 2-253 154-392 (395)
25 PRK09276 LL-diaminopimelate am 100.0 1.6E-34 3.4E-39 262.9 24.9 218 10-246 165-384 (385)
26 COG1167 ARO8 Transcriptional r 100.0 2.6E-34 5.7E-39 265.7 26.0 232 2-252 218-457 (459)
27 PRK09082 methionine aminotrans 100.0 8.7E-35 1.9E-39 264.7 22.3 220 10-246 162-385 (386)
28 PRK05942 aspartate aminotransf 100.0 2.7E-34 5.8E-39 262.1 25.5 219 10-247 169-389 (394)
29 PLN00145 tyrosine/nicotianamin 100.0 6E-34 1.3E-38 262.1 27.7 229 10-253 189-427 (430)
30 PLN02187 rooty/superroot1 100.0 5.2E-34 1.1E-38 264.4 27.4 229 10-253 203-441 (462)
31 PRK06107 aspartate aminotransf 100.0 4.8E-34 1E-38 261.1 26.5 227 10-250 165-400 (402)
32 PRK13355 bifunctional HTH-doma 100.0 5.9E-34 1.3E-38 268.0 27.4 229 10-251 280-515 (517)
33 KOG0257 Kynurenine aminotransf 100.0 1.6E-35 3.4E-40 257.9 14.7 230 7-245 168-414 (420)
34 PTZ00433 tyrosine aminotransfe 100.0 7.4E-34 1.6E-38 260.6 26.6 228 10-252 176-410 (412)
35 TIGR01264 tyr_amTase_E tyrosin 100.0 8.6E-34 1.9E-38 259.4 27.0 226 10-250 167-399 (401)
36 PRK08912 hypothetical protein; 100.0 5.9E-34 1.3E-38 259.3 25.4 224 10-249 158-385 (387)
37 PRK06108 aspartate aminotransf 100.0 6.6E-34 1.4E-38 258.5 25.6 221 10-249 157-381 (382)
38 PLN02231 alanine transaminase 100.0 1.3E-33 2.8E-38 264.8 27.9 239 11-253 271-530 (534)
39 PRK09147 succinyldiaminopimela 100.0 7.7E-34 1.7E-38 259.3 25.8 222 10-249 165-395 (396)
40 PRK07683 aminotransferase A; V 100.0 1E-33 2.2E-38 257.7 26.3 224 10-252 160-385 (387)
41 PRK08361 aspartate aminotransf 100.0 4.8E-34 1E-38 260.3 23.8 222 10-250 165-390 (391)
42 PLN00143 tyrosine/nicotianamin 100.0 1.5E-33 3.2E-38 258.3 26.9 229 10-253 169-407 (409)
43 PRK15481 transcriptional regul 100.0 8.3E-34 1.8E-38 261.8 24.9 220 3-248 205-429 (431)
44 PLN02656 tyrosine transaminase 100.0 2.9E-33 6.2E-38 256.4 26.5 228 10-252 168-405 (409)
45 PRK07324 transaminase; Validat 100.0 4.6E-33 1E-37 252.1 27.1 217 10-251 152-371 (373)
46 TIGR01265 tyr_nico_aTase tyros 100.0 4.8E-33 1E-37 254.6 27.4 226 10-250 168-401 (403)
47 TIGR03538 DapC_gpp succinyldia 100.0 3.2E-33 7E-38 255.0 25.6 220 10-247 164-392 (393)
48 PRK09275 aspartate aminotransf 100.0 1.4E-33 3.1E-38 261.7 23.1 229 9-255 239-522 (527)
49 PRK09265 aminotransferase AlaT 100.0 6.1E-33 1.3E-37 254.0 26.8 229 10-251 167-402 (404)
50 PRK06425 histidinol-phosphate 100.0 3.4E-33 7.4E-38 249.3 24.4 211 10-248 121-331 (332)
51 PRK07568 aspartate aminotransf 100.0 5.9E-33 1.3E-37 253.6 26.6 224 10-252 161-394 (397)
52 PRK07777 aminotransferase; Val 100.0 4.7E-33 1E-37 253.4 25.6 222 10-248 158-384 (387)
53 PRK08960 hypothetical protein; 100.0 6E-33 1.3E-37 252.7 26.0 219 10-249 164-386 (387)
54 PRK08363 alanine aminotransfer 100.0 8E-33 1.7E-37 252.8 26.2 224 10-251 165-395 (398)
55 PF00155 Aminotran_1_2: Aminot 100.0 1.5E-33 3.2E-38 254.4 20.3 216 11-244 148-363 (363)
56 PRK06290 aspartate aminotransf 100.0 7.9E-33 1.7E-37 253.2 24.7 224 10-251 178-406 (410)
57 TIGR03801 asp_4_decarbox aspar 100.0 4.7E-33 1E-37 258.0 23.2 227 9-253 238-519 (521)
58 TIGR03537 DapC succinyldiamino 100.0 1.1E-32 2.5E-37 247.6 24.8 213 10-246 135-349 (350)
59 PRK06358 threonine-phosphate d 100.0 1.4E-32 2.9E-37 247.5 25.3 213 10-248 140-353 (354)
60 PRK05764 aspartate aminotransf 100.0 2.9E-32 6.3E-37 248.7 27.8 226 10-250 163-391 (393)
61 PRK05839 hypothetical protein; 100.0 1.8E-32 3.9E-37 248.4 25.4 216 10-249 154-373 (374)
62 PRK07865 N-succinyldiaminopime 100.0 1.3E-32 2.7E-37 248.6 24.1 214 10-245 147-363 (364)
63 PRK07337 aminotransferase; Val 100.0 2.5E-32 5.3E-37 248.8 25.4 222 10-248 162-387 (388)
64 PRK07550 hypothetical protein; 100.0 4.2E-32 9E-37 247.1 25.8 225 3-247 157-384 (386)
65 PRK09440 avtA valine--pyruvate 100.0 4.2E-32 9E-37 249.4 26.0 222 9-252 177-413 (416)
66 PLN02397 aspartate transaminas 100.0 6.5E-32 1.4E-36 248.2 25.8 211 10-249 193-420 (423)
67 PLN02672 methionine S-methyltr 100.0 6.2E-32 1.3E-36 265.0 26.8 232 12-249 829-1079(1082)
68 PRK08637 hypothetical protein; 100.0 1.2E-31 2.6E-36 244.2 26.4 221 10-251 145-387 (388)
69 PTZ00376 aspartate aminotransf 100.0 6.7E-32 1.4E-36 247.1 23.7 218 3-249 167-402 (404)
70 TIGR03539 DapC_actino succinyl 100.0 1E-31 2.2E-36 242.0 24.2 214 10-244 141-356 (357)
71 PRK08056 threonine-phosphate d 100.0 2.3E-31 5.1E-36 239.6 23.4 213 10-249 141-354 (356)
72 PRK07392 threonine-phosphate d 100.0 7.5E-31 1.6E-35 236.7 25.2 215 3-244 140-356 (360)
73 PRK09257 aromatic amino acid a 100.0 4.5E-31 9.8E-36 241.1 23.2 217 3-248 163-396 (396)
74 KOG0259 Tyrosine aminotransfer 100.0 5E-30 1.1E-34 220.3 24.5 228 10-252 198-435 (447)
75 PRK06836 aspartate aminotransf 100.0 5.9E-30 1.3E-34 233.6 26.1 213 10-252 167-393 (394)
76 PRK06959 putative threonine-ph 100.0 7.8E-30 1.7E-34 228.1 25.7 206 11-252 130-335 (339)
77 PRK03158 histidinol-phosphate 100.0 2.1E-30 4.5E-35 233.7 21.5 209 10-247 150-358 (359)
78 PRK14809 histidinol-phosphate 100.0 2.8E-30 6E-35 232.8 22.2 204 10-249 153-356 (357)
79 PRK04781 histidinol-phosphate 100.0 6.1E-30 1.3E-34 231.0 24.4 211 9-248 150-361 (364)
80 PRK05166 histidinol-phosphate 100.0 5.3E-30 1.1E-34 232.1 23.4 212 10-248 158-369 (371)
81 PRK05664 threonine-phosphate d 100.0 2.6E-29 5.6E-34 224.1 25.8 203 11-250 124-328 (330)
82 PRK07908 hypothetical protein; 100.0 2.1E-29 4.5E-34 226.4 24.8 209 10-249 138-346 (349)
83 PRK02610 histidinol-phosphate 100.0 2.2E-29 4.7E-34 228.3 24.6 205 10-251 167-372 (374)
84 COG0079 HisC Histidinol-phosph 100.0 3.1E-29 6.8E-34 223.8 23.9 209 11-250 145-354 (356)
85 PRK02731 histidinol-phosphate 100.0 2.9E-29 6.4E-34 226.9 24.0 213 10-249 153-365 (367)
86 KOG0634 Aromatic amino acid am 100.0 7.9E-29 1.7E-33 216.2 24.6 242 10-253 202-469 (472)
87 TIGR01140 L_thr_O3P_dcar L-thr 100.0 4.7E-29 1E-33 222.4 23.8 205 10-244 124-329 (330)
88 PRK08153 histidinol-phosphate 100.0 6.3E-29 1.4E-33 224.8 24.4 213 10-252 154-367 (369)
89 PRK01533 histidinol-phosphate 100.0 1.3E-29 2.7E-34 229.0 19.2 207 10-251 150-356 (366)
90 PLN03026 histidinol-phosphate 100.0 7.8E-29 1.7E-33 225.0 23.6 206 10-247 174-379 (380)
91 PRK01688 histidinol-phosphate 100.0 2.8E-29 6E-34 225.7 19.5 206 10-244 144-350 (351)
92 PRK06225 aspartate aminotransf 100.0 2E-28 4.4E-33 222.4 25.2 219 10-252 156-378 (380)
93 PRK09105 putative aminotransfe 100.0 2.8E-28 6.1E-33 220.5 23.9 206 9-248 163-368 (370)
94 PRK08354 putative aminotransfe 100.0 1.6E-27 3.5E-32 210.8 24.6 193 11-247 117-309 (311)
95 PRK03317 histidinol-phosphate 100.0 9.8E-28 2.1E-32 217.1 23.6 212 3-250 153-364 (368)
96 PRK04870 histidinol-phosphate 100.0 6E-28 1.3E-32 217.5 21.2 209 3-247 146-355 (356)
97 PLN02368 alanine transaminase 100.0 4.7E-28 1E-32 220.8 19.2 176 11-187 210-398 (407)
98 PRK00950 histidinol-phosphate 100.0 2.2E-27 4.7E-32 214.2 22.5 205 10-249 157-361 (361)
99 PRK04635 histidinol-phosphate 100.0 1.4E-27 3E-32 215.0 21.0 205 10-246 146-351 (354)
100 PRK14808 histidinol-phosphate 100.0 4E-27 8.6E-32 210.4 22.2 197 11-247 138-334 (335)
101 PRK14807 histidinol-phosphate 100.0 6.9E-27 1.5E-31 210.2 23.4 208 3-247 141-349 (351)
102 PRK05387 histidinol-phosphate 100.0 7.5E-27 1.6E-31 210.1 22.1 206 11-249 144-352 (353)
103 TIGR01141 hisC histidinol-phos 100.0 1.2E-26 2.6E-31 208.2 21.9 205 9-244 140-345 (346)
104 PRK03321 putative aminotransfe 100.0 7.9E-27 1.7E-31 209.9 19.9 207 10-249 144-350 (352)
105 PRK03967 histidinol-phosphate 99.9 1.3E-25 2.7E-30 200.9 22.3 197 10-251 139-335 (337)
106 cd00609 AAT_like Aspartate ami 99.9 4.7E-25 1E-29 197.2 24.7 218 8-245 129-349 (350)
107 COG3977 Alanine-alpha-ketoisov 99.9 3.5E-24 7.6E-29 179.2 23.2 228 5-252 173-413 (417)
108 KOG0258 Alanine aminotransfera 99.9 1.3E-23 2.7E-28 181.3 18.1 245 2-253 207-472 (475)
109 TIGR03576 pyridox_MJ0158 pyrid 99.9 1.2E-22 2.6E-27 181.8 23.5 206 9-247 134-344 (346)
110 PF12897 Aminotran_MocR: Alani 99.9 1.6E-22 3.5E-27 175.6 20.2 235 2-251 163-416 (425)
111 KOG0633 Histidinol phosphate a 99.9 5.2E-22 1.1E-26 163.3 17.8 222 2-248 151-375 (375)
112 PRK13392 5-aminolevulinate syn 99.9 7.8E-22 1.7E-26 181.0 21.2 217 10-252 177-399 (410)
113 PRK02627 acetylornithine amino 99.9 1E-21 2.2E-26 179.5 21.4 210 10-250 181-394 (396)
114 PRK09064 5-aminolevulinate syn 99.9 1.2E-21 2.6E-26 179.7 21.6 224 2-251 167-398 (407)
115 TIGR01821 5aminolev_synth 5-am 99.9 2.5E-21 5.5E-26 177.2 22.2 224 2-251 166-397 (402)
116 PLN02822 serine palmitoyltrans 99.9 3.5E-21 7.7E-26 179.3 22.7 224 11-252 244-479 (481)
117 TIGR00858 bioF 8-amino-7-oxono 99.9 3E-21 6.5E-26 173.7 20.7 218 2-245 135-360 (360)
118 PRK05093 argD bifunctional N-s 99.9 2.8E-21 6E-26 177.0 20.0 209 10-250 183-400 (403)
119 PRK13238 tnaA tryptophanase/L- 99.9 6E-21 1.3E-25 176.5 22.2 233 2-253 166-436 (460)
120 PLN02483 serine palmitoyltrans 99.9 1.5E-20 3.3E-25 175.4 22.8 218 13-253 241-469 (489)
121 TIGR01822 2am3keto_CoA 2-amino 99.9 1.7E-20 3.6E-25 171.2 22.3 214 11-251 170-390 (393)
122 PRK01278 argD acetylornithine 99.9 1.3E-20 2.8E-25 171.8 20.8 208 10-250 174-388 (389)
123 PRK06939 2-amino-3-ketobutyrat 99.9 3.1E-20 6.8E-25 169.5 21.2 214 11-251 174-394 (397)
124 TIGR02539 SepCysS Sep-tRNA:Cys 99.9 5.2E-20 1.1E-24 166.8 22.4 208 11-250 146-368 (370)
125 PRK08088 4-aminobutyrate amino 99.9 5.1E-20 1.1E-24 169.6 22.2 217 11-250 199-423 (425)
126 TIGR01825 gly_Cac_T_rel pyrido 99.9 6.9E-20 1.5E-24 166.7 22.7 220 3-250 153-381 (385)
127 PRK03244 argD acetylornithine 99.9 2.7E-20 5.8E-25 170.2 19.8 208 10-251 182-395 (398)
128 PRK13393 5-aminolevulinate syn 99.9 8.8E-20 1.9E-24 167.2 22.0 215 11-251 177-397 (406)
129 PRK05958 8-amino-7-oxononanoat 99.9 5.6E-20 1.2E-24 167.1 20.6 220 2-247 158-384 (385)
130 cd06454 KBL_like KBL_like; thi 99.9 9.4E-20 2E-24 163.5 21.1 221 2-247 120-348 (349)
131 PRK04073 rocD ornithine--oxo-a 99.9 4.1E-20 8.9E-25 168.9 18.8 204 10-248 185-395 (396)
132 PRK10874 cysteine sulfinate de 99.8 1.8E-19 3.9E-24 164.9 22.1 209 10-250 159-398 (401)
133 TIGR03301 PhnW-AepZ 2-aminoeth 99.8 2E-19 4.4E-24 161.6 22.1 215 2-247 116-354 (355)
134 cd06451 AGAT_like Alanine-glyo 99.8 3.2E-19 6.9E-24 160.7 22.6 215 2-248 116-355 (356)
135 TIGR00707 argD acetylornithine 99.8 1.9E-19 4.2E-24 163.4 20.5 203 10-247 169-378 (379)
136 PRK07179 hypothetical protein; 99.8 3E-19 6.5E-24 163.8 22.0 222 2-252 173-400 (407)
137 PLN00144 acetylornithine trans 99.8 2.4E-19 5.2E-24 162.8 20.6 214 2-250 159-380 (382)
138 TIGR02326 transamin_PhnW 2-ami 99.8 8.1E-19 1.8E-23 158.5 23.4 218 2-249 120-361 (363)
139 PRK04260 acetylornithine amino 99.8 2.5E-19 5.3E-24 162.6 19.9 206 10-247 164-374 (375)
140 TIGR03392 FeS_syn_CsdA cystein 99.8 5.9E-19 1.3E-23 161.3 22.4 209 10-250 156-395 (398)
141 COG1448 TyrB Aspartate/tyrosin 99.8 4.6E-19 1E-23 153.8 20.3 214 5-247 165-395 (396)
142 PTZ00125 ornithine aminotransf 99.8 3.6E-19 7.9E-24 162.8 20.5 219 2-252 170-397 (400)
143 PRK02936 argD acetylornithine 99.8 5.1E-19 1.1E-23 160.7 20.0 204 10-248 166-377 (377)
144 PLN02721 threonine aldolase 99.8 1.2E-18 2.5E-23 156.7 22.1 210 10-250 136-352 (353)
145 PRK07505 hypothetical protein; 99.8 1.4E-18 3.1E-23 159.0 22.8 215 11-250 179-399 (402)
146 cd00610 OAT_like Acetyl ornith 99.8 3.7E-19 8.1E-24 163.3 18.7 219 2-247 181-412 (413)
147 PRK02948 cysteine desulfurase; 99.8 4.6E-19 9.9E-24 161.2 17.8 211 10-252 137-376 (381)
148 cd06502 TA_like Low-specificit 99.8 1.2E-18 2.5E-23 155.7 20.1 205 10-246 126-337 (338)
149 PRK12381 bifunctional succinyl 99.8 8.5E-19 1.8E-23 160.6 19.5 210 11-252 183-401 (406)
150 cd00378 SHMT Serine-glycine hy 99.8 3.8E-18 8.2E-23 156.2 23.1 221 2-252 153-387 (402)
151 PRK13479 2-aminoethylphosphona 99.8 4.7E-18 1E-22 153.8 23.3 219 2-251 122-364 (368)
152 COG0156 BioF 7-keto-8-aminopel 99.8 2.1E-18 4.5E-23 154.4 20.5 223 2-247 158-387 (388)
153 cd00617 Tnase_like Tryptophana 99.8 3.3E-18 7.2E-23 156.4 22.3 232 2-253 141-411 (431)
154 PRK10534 L-threonine aldolase; 99.8 1.8E-18 4E-23 154.4 18.7 198 11-249 129-332 (333)
155 PLN02955 8-amino-7-oxononanoat 99.8 3.5E-18 7.6E-23 156.3 20.6 222 2-253 239-464 (476)
156 PRK00854 rocD ornithine--oxo-a 99.8 3.2E-18 7E-23 156.6 20.3 208 10-249 186-400 (401)
157 TIGR01979 sufS cysteine desulf 99.8 5.4E-18 1.2E-22 155.2 21.1 208 10-251 158-402 (403)
158 PLN02242 methionine gamma-lyas 99.8 5.1E-18 1.1E-22 155.4 20.5 137 11-174 163-304 (418)
159 TIGR00700 GABAtrnsam 4-aminobu 99.8 1.2E-17 2.5E-22 153.7 22.9 213 11-249 197-419 (420)
160 PRK09792 4-aminobutyrate trans 99.8 1.5E-17 3.2E-22 152.9 23.2 218 10-249 197-420 (421)
161 PRK07049 methionine gamma-lyas 99.8 1.8E-17 4E-22 152.3 23.5 133 10-167 173-311 (427)
162 PRK09295 bifunctional cysteine 99.8 8.5E-18 1.8E-22 154.1 21.0 207 10-249 163-403 (406)
163 PRK08247 cystathionine gamma-s 99.8 2.9E-18 6.2E-23 155.0 17.3 210 10-250 135-364 (366)
164 TIGR00713 hemL glutamate-1-sem 99.8 6.9E-18 1.5E-22 155.5 20.0 223 2-250 185-422 (423)
165 PLN02624 ornithine-delta-amino 99.8 2E-17 4.2E-22 154.1 22.9 225 2-255 214-449 (474)
166 PRK06918 4-aminobutyrate amino 99.8 2.6E-17 5.7E-22 152.6 23.6 217 12-252 219-445 (451)
167 KOG1360 5-aminolevulinate synt 99.8 5E-18 1.1E-22 147.4 17.3 230 2-253 292-527 (570)
168 PLN02855 Bifunctional selenocy 99.8 1.1E-17 2.3E-22 154.3 20.7 212 10-252 172-420 (424)
169 TIGR03403 nifS_epsilon cystein 99.8 1E-17 2.2E-22 152.4 20.0 212 10-253 139-378 (382)
170 PRK06777 4-aminobutyrate amino 99.8 5.8E-17 1.3E-21 149.0 23.7 213 11-249 198-420 (421)
171 PLN02409 serine--glyoxylate am 99.8 6.5E-17 1.4E-21 148.0 23.0 222 2-252 126-374 (401)
172 PRK08360 4-aminobutyrate amino 99.8 8.2E-17 1.8E-21 148.6 23.5 215 10-253 203-429 (443)
173 cd06452 SepCysS Sep-tRNA:Cys-t 99.8 8.2E-17 1.8E-21 145.4 22.3 208 10-248 138-360 (361)
174 TIGR03246 arg_catab_astC succi 99.8 6.5E-17 1.4E-21 147.8 21.5 214 3-250 173-395 (397)
175 PRK04612 argD acetylornithine 99.8 9.6E-17 2.1E-21 146.7 22.3 218 2-253 179-406 (408)
176 TIGR01976 am_tr_V_VC1184 cyste 99.8 5.3E-17 1.2E-21 148.3 19.6 203 10-244 155-397 (397)
177 TIGR03402 FeS_nifS cysteine de 99.8 6.2E-17 1.3E-21 147.1 19.4 215 3-253 130-375 (379)
178 TIGR02407 ectoine_ectB diamino 99.8 6.3E-17 1.4E-21 148.4 19.4 208 11-249 194-411 (412)
179 PRK07495 4-aminobutyrate amino 99.8 3.7E-16 8.1E-21 143.6 23.3 217 11-252 198-423 (425)
180 PRK06460 hypothetical protein; 99.7 5.1E-16 1.1E-20 140.7 22.7 132 10-167 129-261 (376)
181 cd06453 SufS_like Cysteine des 99.7 9.4E-17 2E-21 145.5 18.0 203 10-244 138-373 (373)
182 PRK08117 4-aminobutyrate amino 99.7 3.1E-16 6.7E-21 144.9 21.6 215 11-251 207-430 (433)
183 PLN03227 serine palmitoyltrans 99.7 4.3E-16 9.2E-21 142.0 22.2 226 10-253 137-385 (392)
184 TIGR01885 Orn_aminotrans ornit 99.7 3E-16 6.5E-21 143.7 19.9 217 2-248 176-400 (401)
185 PRK05937 8-amino-7-oxononanoat 99.7 3.3E-16 7.1E-21 141.9 19.7 216 2-253 130-353 (370)
186 PRK09331 Sep-tRNA:Cys-tRNA syn 99.7 5.7E-16 1.2E-20 141.2 21.2 215 10-251 157-382 (387)
187 PRK07504 O-succinylhomoserine 99.7 8.6E-16 1.9E-20 140.2 21.7 133 10-167 149-282 (398)
188 PRK06767 methionine gamma-lyas 99.7 5.9E-16 1.3E-20 140.9 20.3 203 10-249 145-384 (386)
189 TIGR01977 am_tr_V_EF2568 cyste 99.7 5.5E-16 1.2E-20 140.6 19.1 208 10-246 136-375 (376)
190 PRK07582 cystathionine gamma-l 99.7 2.3E-15 5.1E-20 136.0 22.6 199 10-250 131-365 (366)
191 PRK13580 serine hydroxymethylt 99.7 1.7E-15 3.8E-20 138.9 21.7 224 2-251 212-446 (493)
192 PRK00011 glyA serine hydroxyme 99.7 5.3E-15 1.2E-19 136.1 24.2 219 2-250 157-389 (416)
193 PRK13520 L-tyrosine decarboxyl 99.7 4.6E-15 1E-19 134.3 23.4 215 2-249 144-370 (371)
194 PRK09264 diaminobutyrate--2-ox 99.7 1.2E-15 2.6E-20 140.5 19.5 209 12-252 199-418 (425)
195 PRK06058 4-aminobutyrate amino 99.7 3.1E-15 6.8E-20 138.4 21.5 213 11-250 219-442 (443)
196 PF04864 Alliinase_C: Allinase 99.7 1.5E-16 3.3E-21 136.8 11.6 202 11-247 136-362 (363)
197 cd00614 CGS_like CGS_like: Cys 99.7 3.3E-15 7.1E-20 135.3 20.7 132 10-168 124-258 (369)
198 PRK08133 O-succinylhomoserine 99.7 6.1E-15 1.3E-19 134.3 22.3 132 10-167 145-277 (390)
199 PRK08045 cystathionine gamma-s 99.7 1.2E-14 2.6E-19 132.1 23.7 131 10-167 136-269 (386)
200 COG0520 csdA Selenocysteine ly 99.7 6E-15 1.3E-19 134.2 21.6 211 8-249 159-404 (405)
201 cd06450 DOPA_deC_like DOPA dec 99.7 4.8E-16 1E-20 139.3 14.0 193 11-246 148-344 (345)
202 PRK06234 methionine gamma-lyas 99.7 4.2E-15 9.1E-20 135.8 19.9 203 10-250 148-397 (400)
203 COG4992 ArgD Ornithine/acetylo 99.7 4.3E-15 9.3E-20 131.2 18.9 216 2-253 177-401 (404)
204 cd00613 GDC-P Glycine cleavage 99.7 3.5E-15 7.5E-20 136.4 18.8 202 10-244 158-398 (398)
205 PRK07269 cystathionine gamma-s 99.7 2.8E-15 6.1E-20 135.1 17.5 209 10-249 135-363 (364)
206 PRK06541 hypothetical protein; 99.7 1.1E-14 2.3E-19 135.2 21.3 224 3-251 211-456 (460)
207 PRK08249 cystathionine gamma-s 99.7 2E-14 4.2E-19 131.2 22.7 130 10-167 148-280 (398)
208 PRK07810 O-succinylhomoserine 99.7 1.4E-14 2.9E-19 132.4 21.6 131 10-167 154-287 (403)
209 TIGR02080 O_succ_thio_ly O-suc 99.7 1.6E-14 3.5E-19 131.1 21.9 131 10-167 135-268 (382)
210 TIGR03812 tyr_de_CO2_Arch tyro 99.7 2.4E-14 5.3E-19 129.7 23.0 204 11-246 153-372 (373)
211 PRK08776 cystathionine gamma-s 99.7 3.3E-14 7.2E-19 129.9 23.6 131 10-167 144-277 (405)
212 TIGR00709 dat 2,4-diaminobutyr 99.7 1.4E-14 3.1E-19 133.9 21.3 219 11-254 206-439 (442)
213 PRK00062 glutamate-1-semialdeh 99.7 1E-14 2.2E-19 134.4 20.2 224 2-251 187-425 (426)
214 COG0160 GabT 4-aminobutyrate a 99.7 2.3E-14 4.9E-19 130.0 21.2 216 11-251 222-446 (447)
215 KOG1359 Glycine C-acetyltransf 99.7 6.7E-15 1.4E-19 123.5 16.2 218 11-251 193-413 (417)
216 TIGR01328 met_gam_lyase methio 99.7 2.4E-14 5.1E-19 130.5 21.4 130 10-167 143-277 (391)
217 TIGR01325 O_suc_HS_sulf O-succ 99.6 2.7E-14 5.9E-19 129.7 21.2 130 10-167 138-270 (380)
218 PRK08593 4-aminobutyrate amino 99.6 4.5E-14 9.8E-19 130.6 22.6 217 10-253 206-432 (445)
219 PRK13034 serine hydroxymethylt 99.6 1E-13 2.3E-18 127.3 24.8 220 2-251 160-393 (416)
220 TIGR01437 selA_rel uncharacter 99.6 1.3E-14 2.9E-19 131.0 18.5 208 2-248 141-363 (363)
221 PRK08861 cystathionine gamma-s 99.6 9.2E-14 2E-18 126.1 23.8 131 10-167 137-270 (388)
222 PRK07811 cystathionine gamma-s 99.6 7E-14 1.5E-18 127.3 22.8 131 10-167 145-278 (388)
223 PRK05964 adenosylmethionine--8 99.6 2.1E-14 4.5E-19 132.3 19.5 218 2-250 189-422 (423)
224 TIGR02006 IscS cysteine desulf 99.6 2E-14 4.3E-19 131.7 18.3 210 10-253 141-380 (402)
225 PRK08574 cystathionine gamma-s 99.6 9.7E-14 2.1E-18 126.1 22.5 137 3-167 130-269 (385)
226 PRK14012 cysteine desulfurase; 99.6 3.3E-14 7.1E-19 130.4 19.5 213 2-252 137-381 (404)
227 PRK00451 glycine dehydrogenase 99.6 1.8E-14 3.8E-19 133.8 18.0 204 10-248 203-446 (447)
228 PRK03715 argD acetylornithine 99.6 3.2E-14 6.9E-19 129.8 19.0 209 11-251 179-394 (395)
229 PRK08064 cystathionine beta-ly 99.6 8.4E-14 1.8E-18 126.9 21.0 204 10-251 137-383 (390)
230 PRK07503 methionine gamma-lyas 99.6 1.3E-13 2.9E-18 126.0 22.2 130 10-167 149-283 (403)
231 PRK07671 cystathionine beta-ly 99.6 1.4E-13 3E-18 124.8 21.7 131 10-167 133-266 (377)
232 PRK07678 aminotransferase; Val 99.6 1.7E-13 3.7E-18 127.0 22.2 219 11-251 213-450 (451)
233 TIGR01329 cysta_beta_ly_E cyst 99.6 1.2E-13 2.5E-18 125.4 20.2 211 2-251 124-376 (378)
234 TIGR03235 DNA_S_dndA cysteine 99.6 7.6E-15 1.6E-19 132.1 12.4 197 10-240 137-348 (353)
235 PRK05769 4-aminobutyrate amino 99.6 3.4E-13 7.4E-18 124.6 22.3 211 11-250 221-439 (441)
236 PRK11522 putrescine--2-oxoglut 99.6 3.4E-13 7.3E-18 125.0 21.9 212 11-254 231-455 (459)
237 PRK05639 4-aminobutyrate amino 99.6 3.6E-13 7.9E-18 124.8 21.7 216 11-252 222-445 (457)
238 TIGR01814 kynureninase kynuren 99.6 2.9E-13 6.3E-18 124.2 20.3 201 9-248 169-405 (406)
239 PRK08248 O-acetylhomoserine am 99.6 8.4E-13 1.8E-17 121.5 23.2 83 3-107 143-225 (431)
240 PRK05968 hypothetical protein; 99.6 3.9E-13 8.5E-18 122.4 20.7 203 10-250 146-386 (389)
241 PRK05939 hypothetical protein; 99.6 5.3E-13 1.1E-17 121.7 21.3 78 10-107 130-207 (397)
242 PRK07050 cystathionine beta-ly 99.6 5.4E-13 1.2E-17 121.6 21.3 206 10-250 149-391 (394)
243 PRK06082 4-aminobutyrate amino 99.6 6.2E-13 1.3E-17 123.4 21.7 224 3-254 221-455 (459)
244 PRK06084 O-acetylhomoserine am 99.6 9.4E-13 2E-17 121.1 22.5 84 2-107 136-219 (425)
245 PRK06176 cystathionine gamma-s 99.6 1.1E-12 2.4E-17 119.0 22.8 131 10-167 133-266 (380)
246 PRK07986 adenosylmethionine--8 99.6 3.5E-13 7.6E-18 123.9 19.7 213 3-250 195-423 (428)
247 COG1104 NifS Cysteine sulfinat 99.6 4E-13 8.7E-18 118.9 19.1 218 2-253 134-380 (386)
248 TIGR03372 putres_am_tran putre 99.6 5.2E-13 1.1E-17 123.0 20.7 206 11-248 224-442 (442)
249 TIGR01326 OAH_OAS_sulfhy OAH/O 99.6 8.5E-13 1.8E-17 121.4 22.0 84 3-108 136-219 (418)
250 PRK06173 adenosylmethionine--8 99.6 5.2E-13 1.1E-17 122.9 20.3 216 2-251 196-426 (429)
251 PLN02651 cysteine desulfurase 99.6 9.1E-14 2E-18 125.7 15.0 201 2-238 131-364 (364)
252 COG0075 Serine-pyruvate aminot 99.6 2.4E-12 5.2E-17 114.7 23.6 221 2-253 122-366 (383)
253 PTZ00094 serine hydroxymethylt 99.6 1.4E-12 3.1E-17 121.1 23.0 221 2-251 174-409 (452)
254 PLN02509 cystathionine beta-ly 99.6 1E-12 2.2E-17 121.5 21.5 133 10-167 216-349 (464)
255 PRK07482 hypothetical protein; 99.5 1.4E-12 3E-17 121.2 22.6 224 2-252 209-456 (461)
256 PLN02760 4-aminobutyrate:pyruv 99.5 1.2E-12 2.6E-17 122.6 21.9 213 12-253 261-494 (504)
257 TIGR00508 bioA adenosylmethion 99.5 6.5E-13 1.4E-17 122.3 19.8 212 3-250 198-426 (427)
258 PRK09028 cystathionine beta-ly 99.5 1.6E-12 3.6E-17 118.0 21.8 130 10-167 145-277 (394)
259 PRK13360 omega amino acid--pyr 99.5 1.9E-12 4.1E-17 119.7 22.3 218 3-250 205-440 (442)
260 PRK05965 hypothetical protein; 99.5 1.7E-12 3.7E-17 120.6 22.0 222 3-251 205-448 (459)
261 PRK06938 diaminobutyrate--2-ox 99.5 1.4E-12 3.1E-17 121.1 21.1 213 11-250 231-460 (464)
262 TIGR01324 cysta_beta_ly_B cyst 99.5 1.4E-12 3E-17 118.2 20.3 204 10-249 134-375 (377)
263 PRK06105 aminotransferase; Pro 99.5 2.9E-12 6.4E-17 119.0 22.8 215 11-254 218-453 (460)
264 KOG1412 Aspartate aminotransfe 99.5 2.9E-12 6.3E-17 108.5 20.2 217 7-252 173-407 (410)
265 PRK06062 hypothetical protein; 99.5 1.5E-12 3.2E-17 120.7 19.7 221 3-252 204-447 (451)
266 PRK07481 hypothetical protein; 99.5 3.3E-12 7.1E-17 118.4 22.0 213 11-251 213-446 (449)
267 PRK09221 beta alanine--pyruvat 99.5 2.8E-12 6.2E-17 118.6 21.5 220 3-251 208-444 (445)
268 PRK08742 adenosylmethionine--8 99.5 3.4E-12 7.4E-17 118.7 22.0 221 3-251 227-468 (472)
269 PRK06917 hypothetical protein; 99.5 5.3E-12 1.1E-16 116.9 23.2 228 3-252 189-439 (447)
270 PRK00615 glutamate-1-semialdeh 99.5 2.4E-12 5.3E-17 118.5 20.7 220 2-251 191-429 (433)
271 PRK06149 hypothetical protein; 99.5 4.3E-12 9.3E-17 127.6 23.7 215 11-250 744-970 (972)
272 PRK06943 adenosylmethionine--8 99.5 5.3E-12 1.2E-16 117.0 21.6 219 3-251 212-447 (453)
273 PRK06148 hypothetical protein; 99.5 9.1E-12 2E-16 125.5 24.4 216 11-251 784-1011(1013)
274 PRK12403 putative aminotransfe 99.5 1.3E-11 2.8E-16 114.7 23.8 213 11-253 222-455 (460)
275 PRK07483 hypothetical protein; 99.5 8.3E-12 1.8E-16 115.5 22.1 220 11-252 199-439 (443)
276 PRK07480 putative aminotransfe 99.5 5.1E-12 1.1E-16 117.2 20.7 216 11-254 219-452 (456)
277 PLN02482 glutamate-1-semialdeh 99.5 8E-12 1.7E-16 116.1 21.7 219 2-250 236-473 (474)
278 PRK07036 hypothetical protein; 99.5 1E-11 2.2E-16 115.6 22.4 218 11-255 220-457 (466)
279 PF01053 Cys_Met_Meta_PP: Cys/ 99.5 5.8E-12 1.3E-16 113.9 20.2 205 2-249 133-386 (386)
280 PRK05967 cystathionine beta-ly 99.5 6.7E-12 1.5E-16 113.9 20.5 138 2-167 142-280 (395)
281 PF00266 Aminotran_5: Aminotra 99.5 7.1E-12 1.5E-16 113.6 20.8 206 2-240 132-371 (371)
282 PRK06931 diaminobutyrate--2-ox 99.5 1.1E-11 2.4E-16 115.0 22.1 216 11-253 225-457 (459)
283 PRK08297 L-lysine aminotransfe 99.5 4.5E-12 9.8E-17 117.2 19.2 210 3-251 216-442 (443)
284 COG0161 BioA Adenosylmethionin 99.5 6.2E-12 1.3E-16 113.7 19.2 225 2-253 203-446 (449)
285 PRK07030 adenosylmethionine--8 99.5 1.2E-11 2.7E-16 114.9 21.8 220 3-251 205-447 (466)
286 PRK06916 adenosylmethionine--8 99.5 8.9E-12 1.9E-16 115.8 20.3 221 3-252 214-457 (460)
287 PRK12389 glutamate-1-semialdeh 99.5 1.3E-11 2.8E-16 113.9 21.3 218 2-250 190-427 (428)
288 PRK05630 adenosylmethionine--8 99.5 8.6E-12 1.9E-16 114.7 19.4 206 11-250 200-420 (422)
289 PRK07046 aminotransferase; Val 99.5 1.7E-11 3.7E-16 113.6 21.4 220 2-251 210-451 (453)
290 PRK06702 O-acetylhomoserine am 99.4 1.5E-11 3.3E-16 112.7 20.6 136 3-167 141-310 (432)
291 COG0001 HemL Glutamate-1-semia 99.4 1.7E-11 3.8E-16 109.6 20.3 222 1-252 189-430 (432)
292 PRK06209 glutamate-1-semialdeh 99.4 1.1E-11 2.4E-16 114.3 19.7 216 2-253 177-408 (431)
293 COG0626 MetC Cystathionine bet 99.4 2.2E-11 4.7E-16 109.3 20.7 131 10-167 148-282 (396)
294 cd00615 Orn_deC_like Ornithine 99.4 3.9E-13 8.5E-18 118.0 9.0 146 2-165 145-293 (294)
295 PRK07812 O-acetylhomoserine am 99.4 4.7E-11 1E-15 110.0 22.4 78 10-107 154-231 (436)
296 PLN03226 serine hydroxymethylt 99.4 3.9E-11 8.4E-16 111.7 21.5 219 2-251 175-420 (475)
297 TIGR00699 GABAtrns_euk 4-amino 99.4 6.1E-12 1.3E-16 116.3 16.0 210 2-248 241-464 (464)
298 PRK05994 O-acetylhomoserine am 99.4 5.1E-11 1.1E-15 109.8 21.5 77 10-106 147-223 (427)
299 PRK13237 tyrosine phenol-lyase 99.4 1.4E-10 3.1E-15 105.6 23.5 238 2-253 166-436 (460)
300 PRK04366 glycine dehydrogenase 99.4 6.5E-11 1.4E-15 110.7 22.0 218 9-253 206-451 (481)
301 KOG1357 Serine palmitoyltransf 99.4 3.2E-12 6.9E-17 113.2 12.3 206 21-249 286-501 (519)
302 PLN02974 adenosylmethionine-8- 99.4 1.4E-10 2.9E-15 113.6 23.0 215 11-248 584-816 (817)
303 PRK04013 argD acetylornithine/ 99.4 2.8E-11 6.1E-16 109.0 16.9 199 10-251 161-361 (364)
304 TIGR03251 LAT_fam L-lysine 6-t 99.4 4.8E-11 1E-15 110.2 18.6 205 10-246 217-430 (431)
305 TIGR01366 serC_3 phosphoserine 99.4 5.3E-11 1.2E-15 107.5 18.2 205 9-250 126-360 (361)
306 COG2008 GLY1 Threonine aldolas 99.4 4.8E-11 1E-15 103.7 17.0 209 8-248 127-341 (342)
307 TIGR03531 selenium_SpcS O-phos 99.4 1.2E-10 2.5E-15 107.0 20.2 225 2-247 194-443 (444)
308 TIGR02618 tyr_phenol_ly tyrosi 99.4 2.7E-10 5.9E-15 103.6 22.0 238 2-253 159-429 (450)
309 KOG1402 Ornithine aminotransfe 99.4 5.7E-11 1.2E-15 101.6 16.4 214 2-248 199-425 (427)
310 PRK08134 O-acetylhomoserine am 99.4 3.2E-10 7E-15 104.5 22.9 82 3-106 143-224 (433)
311 PRK03080 phosphoserine aminotr 99.3 6.8E-11 1.5E-15 107.5 17.9 207 12-253 137-376 (378)
312 PRK08114 cystathionine beta-ly 99.3 2.9E-10 6.2E-15 103.2 21.8 135 3-167 141-280 (395)
313 KOG1404 Alanine-glyoxylate ami 99.3 2.7E-10 5.9E-15 99.5 19.6 204 16-244 216-432 (442)
314 PLN02724 Molybdenum cofactor s 99.3 9.6E-11 2.1E-15 115.9 18.9 219 10-251 191-489 (805)
315 KOG0053 Cystathionine beta-lya 99.3 7.3E-11 1.6E-15 105.0 16.0 131 10-167 161-294 (409)
316 cd00616 AHBA_syn 3-amino-5-hyd 99.3 2.3E-10 5E-15 102.7 19.3 202 10-245 105-352 (352)
317 TIGR01364 serC_1 phosphoserine 99.3 3.4E-10 7.4E-15 101.7 19.2 201 8-250 127-348 (349)
318 KOG1368 Threonine aldolase [Am 99.3 2.1E-10 4.7E-15 96.9 16.2 212 9-251 152-370 (384)
319 KOG1411 Aspartate aminotransfe 99.3 5.1E-11 1.1E-15 102.4 12.1 213 6-247 192-422 (427)
320 TIGR02379 ECA_wecE TDP-4-keto- 99.3 5.1E-10 1.1E-14 101.6 19.3 207 10-248 118-375 (376)
321 PLN02271 serine hydroxymethylt 99.3 1.3E-09 2.8E-14 101.3 20.6 212 10-249 297-539 (586)
322 PRK05355 3-phosphoserine/phosp 99.2 3.7E-10 8E-15 101.9 16.5 200 10-250 140-358 (360)
323 cd00611 PSAT_like Phosphoserin 99.2 1.1E-09 2.4E-14 98.8 18.9 199 8-248 135-354 (355)
324 PRK05613 O-acetylhomoserine am 99.2 3.4E-09 7.5E-14 97.7 22.0 77 10-106 154-230 (437)
325 PLN02414 glycine dehydrogenase 99.2 3.3E-09 7.1E-14 105.5 22.4 226 2-253 656-910 (993)
326 PRK15029 arginine decarboxylas 99.2 1E-09 2.2E-14 106.2 18.4 157 2-167 295-464 (755)
327 COG0112 GlyA Glycine/serine hy 99.2 3.4E-09 7.4E-14 93.1 18.7 223 2-252 158-392 (413)
328 PRK06434 cystathionine gamma-l 99.2 5.6E-09 1.2E-13 94.7 20.5 128 11-167 148-278 (384)
329 KOG1549 Cysteine desulfurase N 99.2 1.3E-09 2.8E-14 97.4 15.1 83 3-108 175-257 (428)
330 PRK02769 histidine decarboxyla 99.1 1.5E-08 3.2E-13 92.0 21.0 209 2-249 150-371 (380)
331 KOG1401 Acetylornithine aminot 99.1 1.1E-08 2.5E-13 90.1 19.1 219 2-251 196-431 (433)
332 PF01276 OKR_DC_1: Orn/Lys/Arg 99.1 3.1E-10 6.6E-15 102.8 9.5 163 2-174 156-328 (417)
333 PRK11658 UDP-4-amino-4-deoxy-L 99.1 6.3E-09 1.4E-13 94.7 18.1 208 10-248 120-377 (379)
334 PF00464 SHMT: Serine hydroxym 99.1 6.1E-09 1.3E-13 94.0 17.0 211 2-242 161-397 (399)
335 PRK11706 TDP-4-oxo-6-deoxy-D-g 99.1 1.5E-08 3.3E-13 92.1 19.7 83 10-116 118-203 (375)
336 COG2873 MET17 O-acetylhomoseri 99.1 8.2E-09 1.8E-13 90.0 16.7 219 9-250 145-425 (426)
337 PLN02880 tyrosine decarboxylas 99.0 2.6E-08 5.6E-13 93.3 19.6 218 14-251 242-485 (490)
338 TIGR03588 PseC UDP-4-keto-6-de 99.0 5.5E-08 1.2E-12 88.6 20.2 210 10-248 120-380 (380)
339 PRK13578 ornithine decarboxyla 99.0 1.2E-08 2.6E-13 98.0 15.8 229 2-250 265-565 (720)
340 TIGR01788 Glu-decarb-GAD gluta 99.0 9.8E-08 2.1E-12 87.9 20.3 228 2-251 179-430 (431)
341 TIGR02617 tnaA_trp_ase tryptop 99.0 1.2E-07 2.7E-12 85.9 20.2 215 24-253 197-444 (467)
342 PRK15400 lysine decarboxylase 99.0 1.7E-08 3.7E-13 96.9 15.5 230 2-250 285-559 (714)
343 PRK04311 selenocysteine syntha 99.0 1.3E-07 2.9E-12 87.7 20.5 218 2-249 209-463 (464)
344 PLN02590 probable tyrosine dec 99.0 1.5E-07 3.3E-12 88.6 20.8 220 14-253 290-535 (539)
345 cd01494 AAT_I Aspartate aminot 98.9 5.9E-09 1.3E-13 83.1 8.3 80 9-106 90-169 (170)
346 PRK12566 glycine dehydrogenase 98.9 4.2E-07 9.1E-12 89.4 21.7 223 10-259 640-885 (954)
347 PRK15399 lysine decarboxylase 98.9 2.8E-07 6E-12 88.8 19.9 227 2-249 285-558 (713)
348 PLN03032 serine decarboxylase; 98.9 2.7E-07 5.8E-12 83.4 18.6 205 2-246 151-372 (374)
349 TIGR03799 NOD_PanD_pyr putativ 98.9 3.8E-07 8.2E-12 85.9 20.0 216 11-243 263-518 (522)
350 KOG1358 Serine palmitoyltransf 98.9 3.8E-08 8.3E-13 86.3 12.2 222 13-250 235-465 (467)
351 KOG2862 Alanine-glyoxylate ami 98.8 1.4E-06 3E-11 74.5 20.6 219 2-251 134-383 (385)
352 PF00202 Aminotran_3: Aminotra 98.8 1.9E-08 4.2E-13 90.0 9.5 112 11-138 177-292 (339)
353 COG1103 Archaea-specific pyrid 98.8 4.7E-07 1E-11 76.0 16.3 220 2-251 146-381 (382)
354 TIGR00461 gcvP glycine dehydro 98.8 1.3E-06 2.8E-11 86.5 21.4 225 2-253 618-870 (939)
355 KOG1403 Predicted alanine-glyo 98.8 6.9E-07 1.5E-11 76.0 16.7 224 5-252 203-439 (452)
356 PLN02452 phosphoserine transam 98.8 7.2E-07 1.6E-11 80.5 17.7 202 7-250 141-363 (365)
357 PRK05367 glycine dehydrogenase 98.8 1.3E-06 2.9E-11 87.4 21.0 226 2-253 630-878 (954)
358 TIGR00474 selA seryl-tRNA(sec) 98.7 1.1E-06 2.5E-11 81.3 16.4 208 9-244 209-453 (454)
359 PRK15407 lipopolysaccharide bi 98.6 4E-06 8.6E-11 77.7 18.2 85 10-118 158-245 (438)
360 COG0399 WecE Predicted pyridox 98.6 1.6E-05 3.5E-10 71.4 21.1 93 2-118 115-208 (374)
361 TIGR01365 serC_2 phosphoserine 98.6 5.1E-06 1.1E-10 75.1 17.7 206 15-247 131-370 (374)
362 PRK05367 glycine dehydrogenase 98.6 5.7E-06 1.2E-10 82.9 19.4 196 11-245 206-437 (954)
363 PLN02263 serine decarboxylase 98.5 1.4E-05 3.1E-10 73.8 19.8 210 2-251 218-444 (470)
364 COG3844 Kynureninase [Amino ac 98.5 2E-05 4.4E-10 68.0 17.1 205 10-252 165-404 (407)
365 COG1982 LdcC Arginine/lysine/o 98.4 1.1E-05 2.3E-10 75.2 15.6 91 2-108 156-247 (557)
366 KOG2467 Glycine/serine hydroxy 98.4 3.5E-05 7.5E-10 67.5 17.4 218 2-249 181-425 (477)
367 COG3033 TnaA Tryptophanase [Am 98.4 3.5E-05 7.5E-10 67.4 17.2 227 11-252 185-446 (471)
368 PLN02414 glycine dehydrogenase 98.4 3.7E-05 8E-10 77.2 19.2 195 14-246 237-465 (993)
369 PF01212 Beta_elim_lyase: Beta 98.4 2.5E-07 5.5E-12 80.8 3.2 146 10-173 123-276 (290)
370 COG0076 GadB Glutamate decarbo 98.3 3.6E-05 7.7E-10 71.5 16.4 172 2-186 198-381 (460)
371 PRK12462 phosphoserine aminotr 98.3 8.4E-05 1.8E-09 66.8 17.4 203 7-250 139-362 (364)
372 KOG1405 4-aminobutyrate aminot 98.3 5.6E-05 1.2E-09 66.0 15.4 211 2-249 258-482 (484)
373 PF01041 DegT_DnrJ_EryC1: DegT 98.2 2.4E-05 5.1E-10 70.9 13.1 91 2-119 106-200 (363)
374 PF05889 SLA_LP_auto_ag: Solub 98.0 0.00086 1.9E-08 60.1 17.9 229 3-249 145-389 (389)
375 PF02347 GDC-P: Glycine cleava 97.8 0.00064 1.4E-08 62.1 14.6 197 10-244 196-429 (429)
376 PF00282 Pyridoxal_deC: Pyrido 97.7 0.001 2.2E-08 60.4 13.9 152 14-180 197-369 (373)
377 TIGR00461 gcvP glycine dehydro 97.7 0.0023 4.9E-08 64.0 17.0 195 11-245 194-426 (939)
378 KOG0628 Aromatic-L-amino-acid/ 97.4 0.011 2.4E-07 53.7 15.0 230 2-253 222-474 (511)
379 KOG1383 Glutamate decarboxylas 97.3 0.036 7.9E-07 50.5 18.2 217 10-253 217-449 (491)
380 COG1921 SelA Selenocysteine sy 97.3 0.0057 1.2E-07 55.0 12.2 118 2-138 149-268 (395)
381 PF03841 SelA: L-seryl-tRNA se 97.2 0.00064 1.4E-08 60.4 5.4 152 2-167 129-296 (367)
382 KOG3843 Predicted serine hydro 97.2 0.0036 7.7E-08 53.0 9.2 215 28-259 171-411 (432)
383 PF06838 Met_gamma_lyase: Meth 97.0 0.0063 1.4E-07 54.0 10.1 99 2-119 147-250 (403)
384 COG1003 GcvP Glycine cleavage 97.0 0.1 2.3E-06 47.3 17.5 221 10-255 203-452 (496)
385 PRK12566 glycine dehydrogenase 96.8 0.1 2.2E-06 52.4 17.6 199 11-245 208-439 (954)
386 KOG0629 Glutamate decarboxylas 96.8 0.052 1.1E-06 49.1 13.9 200 30-247 269-506 (510)
387 COG0403 GcvP Glycine cleavage 96.5 0.42 9.2E-06 43.4 17.6 201 10-247 209-447 (450)
388 TIGR03811 tyr_de_CO2_Ent tyros 96.0 0.31 6.8E-06 47.1 15.3 158 14-182 281-500 (608)
389 COG1932 SerC Phosphoserine ami 96.0 0.32 7E-06 43.3 14.1 157 81-250 189-363 (365)
390 KOG3846 L-kynurenine hydrolase 95.8 0.78 1.7E-05 40.1 15.0 210 5-252 207-463 (465)
391 KOG2040 Glycine dehydrogenase 94.4 3.6 7.8E-05 39.7 16.1 222 11-261 680-929 (1001)
392 COG4100 Cystathionine beta-lya 92.7 0.86 1.9E-05 39.7 8.5 88 10-114 164-256 (416)
393 KOG2790 Phosphoserine aminotra 88.4 4.1 8.8E-05 35.4 8.7 153 80-250 193-368 (370)
394 PF03786 UxuA: D-mannonate deh 59.3 21 0.00045 32.1 5.2 43 7-49 21-63 (351)
395 COG2256 MGS1 ATPase related to 58.2 27 0.00058 32.1 5.6 53 27-91 83-140 (436)
396 PF12138 Spherulin4: Spherulat 57.1 31 0.00067 29.6 5.8 47 2-48 21-71 (253)
397 COG0296 GlgB 1,4-alpha-glucan 57.0 19 0.00041 35.1 4.8 35 24-58 207-241 (628)
398 smart00642 Aamy Alpha-amylase 54.2 21 0.00045 28.4 4.0 28 29-56 68-95 (166)
399 KOG2040 Glycine dehydrogenase 53.2 2.4E+02 0.0052 28.0 11.7 85 146-245 393-478 (1001)
400 PLN03244 alpha-amylase; Provis 51.9 27 0.00059 35.0 5.0 37 22-58 432-468 (872)
401 TIGR02104 pulA_typeI pullulana 47.5 23 0.0005 34.5 3.9 27 30-56 228-254 (605)
402 PF00128 Alpha-amylase: Alpha 46.7 18 0.00038 31.2 2.8 29 29-57 50-78 (316)
403 PF13872 AAA_34: P-loop contai 46.4 15 0.00033 32.2 2.2 27 30-56 158-185 (303)
404 PF02677 DUF208: Uncharacteriz 45.1 48 0.001 26.7 4.7 48 3-54 16-64 (176)
405 TIGR02402 trehalose_TreZ malto 45.0 45 0.00097 32.1 5.4 31 27-57 156-186 (542)
406 PF14097 SpoVAE: Stage V sporu 44.7 1.6E+02 0.0035 23.5 7.5 81 20-110 32-112 (180)
407 COG1377 FlhB Flagellar biosynt 44.3 31 0.00066 31.2 3.8 49 4-53 255-318 (363)
408 PRK02308 uvsE putative UV dama 43.7 2.3E+02 0.005 25.0 9.6 66 146-211 36-107 (303)
409 PLN02672 methionine S-methyltr 41.4 2.2E+02 0.0048 30.0 9.8 106 3-117 520-625 (1082)
410 PF07745 Glyco_hydro_53: Glyco 40.5 75 0.0016 28.5 5.7 46 12-59 41-86 (332)
411 PF02844 GARS_N: Phosphoribosy 40.0 37 0.00079 24.6 3.0 45 3-48 16-66 (100)
412 cd06568 GH20_SpHex_like A subg 39.5 40 0.00087 30.1 3.9 27 23-49 67-93 (329)
413 KOG2741 Dimeric dihydrodiol de 39.5 86 0.0019 28.1 5.8 50 2-54 64-132 (351)
414 TIGR00629 uvde UV damage endon 38.7 2.8E+02 0.0062 24.6 9.4 96 146-251 40-142 (312)
415 PF08672 APC2: Anaphase promot 38.3 32 0.00069 22.3 2.2 34 20-53 25-58 (60)
416 PRK09441 cytoplasmic alpha-amy 37.4 43 0.00093 31.6 3.9 29 29-57 79-107 (479)
417 cd01831 Endoglucanase_E_like E 37.1 1.2E+02 0.0026 23.6 6.0 48 2-50 87-136 (169)
418 COG3867 Arabinogalactan endo-1 36.6 88 0.0019 27.6 5.2 48 12-59 80-132 (403)
419 PF10609 ParA: ParA/MinD ATPas 36.6 84 0.0018 21.8 4.2 33 11-48 25-57 (81)
420 COG4050 Uncharacterized protei 36.3 1.1E+02 0.0025 22.8 5.1 29 224-253 121-149 (152)
421 cd06563 GH20_chitobiase-like T 36.2 41 0.00089 30.4 3.5 28 23-50 78-105 (357)
422 PRK00109 Holliday junction res 36.2 1.6E+02 0.0034 22.6 6.3 52 3-55 47-101 (138)
423 PF03460 NIR_SIR_ferr: Nitrite 36.1 27 0.00059 22.9 1.8 28 17-45 11-38 (69)
424 PRK12313 glycogen branching en 36.0 61 0.0013 31.8 4.8 32 26-57 215-246 (633)
425 PF14258 DUF4350: Domain of un 35.8 95 0.0021 20.3 4.4 34 13-50 36-70 (70)
426 cd02742 GH20_hexosaminidase Be 34.8 46 0.001 29.2 3.5 26 24-49 65-90 (303)
427 COG0352 ThiE Thiamine monophos 34.8 89 0.0019 26.0 5.0 100 2-121 27-127 (211)
428 PHA02678 hypothetical protein; 34.7 54 0.0012 22.8 3.0 39 7-56 42-84 (89)
429 TIGR01515 branching_enzym alph 34.5 65 0.0014 31.5 4.7 32 26-57 201-232 (613)
430 cd01828 sialate_O-acetylestera 34.5 1.5E+02 0.0034 22.8 6.3 39 11-49 48-92 (169)
431 KOG2836 Protein tyrosine phosp 33.8 83 0.0018 24.2 4.1 33 10-50 15-47 (173)
432 PF01408 GFO_IDH_MocA: Oxidore 33.7 1.1E+02 0.0025 22.0 5.1 43 2-54 54-96 (120)
433 PRK05402 glycogen branching en 33.6 70 0.0015 32.0 4.9 34 23-56 307-340 (726)
434 PLN02960 alpha-amylase 33.5 71 0.0015 32.5 4.8 35 23-57 458-492 (897)
435 PRK03906 mannonate dehydratase 32.9 1.1E+02 0.0024 28.0 5.7 40 10-49 22-61 (385)
436 cd06564 GH20_DspB_LnbB-like Gl 32.3 52 0.0011 29.2 3.5 27 23-49 74-100 (326)
437 PLN02447 1,4-alpha-glucan-bran 31.9 75 0.0016 31.9 4.7 29 28-56 297-325 (758)
438 PLN00196 alpha-amylase; Provis 31.9 59 0.0013 30.2 3.8 29 29-57 90-118 (428)
439 PRK01018 50S ribosomal protein 31.5 1.7E+02 0.0037 20.9 5.5 39 3-49 25-63 (99)
440 PRK13602 putative ribosomal pr 31.3 1.8E+02 0.0038 20.0 5.4 40 4-51 21-60 (82)
441 PF00150 Cellulase: Cellulase 30.5 55 0.0012 27.8 3.3 24 31-54 62-85 (281)
442 PF09885 DUF2112: Uncharacteri 30.5 1.4E+02 0.003 22.9 4.8 26 224-250 117-142 (143)
443 TIGR00695 uxuA mannonate dehyd 30.1 1.4E+02 0.003 27.5 5.8 40 10-49 22-61 (394)
444 PF04002 RadC: RadC-like JAB d 29.9 1.7E+02 0.0036 21.9 5.4 43 2-47 57-103 (123)
445 PLN02361 alpha-amylase 29.5 63 0.0014 29.8 3.5 45 11-55 42-100 (401)
446 PRK05583 ribosomal protein L7A 29.5 1.9E+02 0.0041 21.0 5.4 38 2-47 25-62 (104)
447 PRK14706 glycogen branching en 29.1 86 0.0019 30.9 4.6 32 26-57 212-243 (639)
448 COG0673 MviM Predicted dehydro 29.1 83 0.0018 27.7 4.3 65 2-71 59-141 (342)
449 PF00728 Glyco_hydro_20: Glyco 28.6 48 0.001 29.5 2.6 23 27-49 69-91 (351)
450 cd06570 GH20_chitobiase-like_1 28.6 71 0.0015 28.3 3.6 25 25-49 62-86 (311)
451 COG0669 CoaD Phosphopantethein 28.4 1.9E+02 0.0041 22.9 5.4 39 2-43 22-61 (159)
452 PF05913 DUF871: Bacterial pro 28.3 65 0.0014 29.2 3.4 87 30-139 46-133 (357)
453 PRK10785 maltodextrin glucosid 28.1 76 0.0017 30.9 4.0 46 11-56 192-251 (598)
454 PRK13109 flhB flagellar biosyn 27.9 56 0.0012 29.6 2.9 43 10-53 263-320 (358)
455 TIGR03271 methan_mark_5 putati 27.9 1.5E+02 0.0033 22.6 4.6 26 224-250 116-141 (142)
456 TIGR02102 pullulan_Gpos pullul 27.8 85 0.0018 33.1 4.4 27 30-56 554-580 (1111)
457 cd06569 GH20_Sm-chitobiase-lik 27.3 79 0.0017 29.6 3.8 26 24-49 90-115 (445)
458 PRK14705 glycogen branching en 26.9 96 0.0021 33.0 4.7 34 23-56 807-840 (1224)
459 PF03652 UPF0081: Uncharacteri 26.8 1.3E+02 0.0029 22.9 4.4 53 2-55 43-99 (135)
460 COG1105 FruK Fructose-1-phosph 26.7 2.4E+02 0.0053 25.0 6.5 28 28-55 143-170 (310)
461 cd06562 GH20_HexA_HexB-like Be 26.4 73 0.0016 28.7 3.3 26 25-50 64-89 (348)
462 KOG0622 Ornithine decarboxylas 26.3 2.1E+02 0.0046 26.5 6.1 52 2-53 157-215 (448)
463 TIGR02103 pullul_strch alpha-1 26.1 1.1E+02 0.0023 31.6 4.7 30 30-59 403-432 (898)
464 PF08543 Phos_pyr_kin: Phospho 25.9 88 0.0019 26.4 3.6 32 24-55 66-97 (246)
465 PF01248 Ribosomal_L7Ae: Ribos 25.8 1.9E+02 0.0042 20.1 4.9 42 3-52 24-66 (95)
466 PF09547 Spore_IV_A: Stage IV 25.4 5.1E+02 0.011 24.4 8.4 55 150-215 162-216 (492)
467 TIGR02100 glgX_debranch glycog 24.7 1E+02 0.0023 30.6 4.3 29 29-57 243-271 (688)
468 PRK12721 secretion system appa 24.3 45 0.00098 30.1 1.6 44 9-53 253-311 (349)
469 PRK06298 type III secretion sy 24.3 72 0.0016 28.9 2.9 44 10-54 255-313 (356)
470 COG0648 Nfo Endonuclease IV [D 24.1 1.4E+02 0.0031 26.0 4.5 31 24-54 148-179 (280)
471 TIGR00097 HMP-P_kinase phospho 23.9 89 0.0019 26.5 3.3 31 24-54 73-104 (254)
472 TIGR02064 dsrA sulfite reducta 23.9 1E+02 0.0023 28.4 3.9 60 11-70 77-137 (402)
473 TIGR03793 TOMM_pelo TOMM prope 23.7 1.2E+02 0.0025 20.8 3.2 25 12-37 51-75 (77)
474 PRK09108 type III secretion sy 23.6 70 0.0015 28.9 2.7 43 10-53 256-313 (353)
475 PTZ00106 60S ribosomal protein 23.6 2.7E+02 0.0058 20.4 5.3 39 3-49 34-72 (108)
476 PRK12568 glycogen branching en 23.5 1.4E+02 0.003 29.9 4.9 30 28-57 316-345 (730)
477 PRK12468 flhB flagellar biosyn 23.4 75 0.0016 29.1 2.8 43 10-53 261-318 (386)
478 PF07488 Glyco_hydro_67M: Glyc 23.2 1.2E+02 0.0027 26.8 3.9 49 3-54 63-115 (328)
479 TIGR01019 sucCoAalpha succinyl 23.2 1.9E+02 0.0041 25.3 5.2 44 2-53 80-123 (286)
480 COG1023 Gnd Predicted 6-phosph 23.1 2E+02 0.0044 24.7 5.0 44 1-51 49-93 (300)
481 COG2257 Uncharacterized homolo 22.9 58 0.0013 23.0 1.6 23 33-55 34-56 (92)
482 PRK09505 malS alpha-amylase; R 22.8 1.1E+02 0.0024 30.4 4.1 29 29-57 290-318 (683)
483 PRK00014 ribB 3,4-dihydroxy-2- 22.8 1.2E+02 0.0027 25.5 3.7 33 14-49 174-206 (230)
484 PRK08156 type III secretion sy 22.8 68 0.0015 29.1 2.4 43 10-53 249-306 (361)
485 PRK05678 succinyl-CoA syntheta 22.7 1.9E+02 0.0042 25.3 5.2 44 2-53 82-125 (291)
486 TIGR02456 treS_nterm trehalose 22.4 1.1E+02 0.0024 29.3 4.0 28 29-56 74-101 (539)
487 cd07018 S49_SppA_67K_type Sign 22.4 1.8E+02 0.004 24.1 4.9 41 7-48 42-82 (222)
488 TIGR01404 FlhB_rel_III type II 22.3 71 0.0015 28.8 2.4 21 33-53 290-310 (342)
489 TIGR00789 flhB_rel flhB C-term 22.3 84 0.0018 21.8 2.3 24 33-56 29-52 (82)
490 TIGR02403 trehalose_treC alpha 22.1 1.1E+02 0.0025 29.3 4.0 28 29-56 73-100 (543)
491 PRK00910 ribB 3,4-dihydroxy-2- 22.1 1.4E+02 0.003 25.0 3.9 33 14-49 170-202 (218)
492 PF06462 Hyd_WA: Propeller; I 22.1 52 0.0011 18.2 1.0 12 18-29 18-29 (32)
493 TIGR00328 flhB flagellar biosy 21.8 1E+02 0.0022 27.9 3.3 44 10-54 254-312 (347)
494 cd06565 GH20_GcnA-like Glycosy 21.6 1E+02 0.0022 27.1 3.3 25 25-49 54-78 (301)
495 TIGR00250 RNAse_H_YqgF RNAse H 21.6 3.6E+02 0.0078 20.3 6.3 53 2-55 40-95 (130)
496 PRK10933 trehalose-6-phosphate 21.5 1.2E+02 0.0026 29.3 4.0 28 29-56 79-106 (551)
497 cd01019 ZnuA Zinc binding prot 21.4 4.9E+02 0.011 22.5 7.5 105 119-246 120-226 (286)
498 PRK00083 frr ribosome recyclin 21.3 4.5E+02 0.0097 21.3 11.0 51 200-255 78-128 (185)
499 TIGR00608 radc DNA repair prot 21.3 3E+02 0.0065 23.0 5.8 43 2-47 152-198 (218)
500 TIGR00496 frr ribosome recycli 21.2 4.3E+02 0.0093 21.2 6.5 52 200-256 69-120 (176)
No 1
>PLN02450 1-aminocyclopropane-1-carboxylate synthase
Probab=100.00 E-value=9.8e-44 Score=329.75 Aligned_cols=278 Identities=81% Similarity=1.254 Sum_probs=232.2
Q ss_pred CCCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEe
Q 044773 9 HLKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVY 88 (289)
Q Consensus 9 ~~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~ 88 (289)
..++|+|+++|||||||.+++.+++++|+++|++++++||+||+|..+.|++..+.++.+...+..+.+.+..+++++++
T Consensus 189 ~~~~k~v~l~nP~NPTG~~~s~e~l~~ll~~a~~~~~~iI~DE~Y~~~~f~~~~~~s~l~~~~~~~~~~~~~~~~vi~l~ 268 (468)
T PLN02450 189 NLKVKGVLITNPSNPLGTTTTRTELNLLVDFITAKNIHLISDEIYSGTVFDSPGFVSVMEVLKDRKLENTDVSNRVHIVY 268 (468)
T ss_pred CCCeeEEEEecCCCCCCcccCHHHHHHHHHHHHHCCcEEEEEccccccccCCCCcccHHHHhhhcccccCCCCCcEEEEE
Confidence 34789999999999999999999999999999999999999999998878765555655543211111123468999999
Q ss_pred cCccccCCCCceEEEEEecCHHHHHHHHhccccCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 044773 89 SLSKDLGLPGFRVGAIYSNDDTVVAAATKMSSFGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEKAG 168 (289)
Q Consensus 89 s~sK~~g~~G~r~G~i~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g 168 (289)
||||.+|++|+|+||++++++.+.+.+.....+..+|++.|.++..+|+++.+...++++.++.++++++.+.+.|+++|
T Consensus 269 S~SK~~~l~GlRiG~li~~~~~l~~~~~~~~~~~~~s~~~Q~a~~~~L~~~~~~~~~l~~~~~~l~~rr~~l~~~L~~~g 348 (468)
T PLN02450 269 SLSKDLGLPGFRVGAIYSNDEMVVSAATKMSSFGLVSSQTQYLLSALLSDKKFTKNYLEENQKRLKQRQKKLVSGLEAAG 348 (468)
T ss_pred eccccCCCCCccEEEEEECCHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 99999999999999999987776666666655555788999999999999877455789999999999999999999999
Q ss_pred CceecCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEEecCCHHHHHHHHHHHHHHH
Q 044773 169 ISCLKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKLSMQRLKAFV 248 (289)
Q Consensus 169 ~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ris~~~~~~e~l~~~l~~l~~~l 248 (289)
+.+.++++|+|+|++++.......+.++.+++..+++++||.+.||..|+...++|+||+++..+++++++++++|++++
T Consensus 349 i~~~~~~~g~flwi~l~~~~~~~~~~~~~~l~~~ll~~~gV~v~PG~~f~~~~~g~~Rl~f~~~~~~~l~~~l~ri~~~l 428 (468)
T PLN02450 349 IKCLKSNAGLFCWVDMRHLLKSNTFEAEMELWKKIVYEVKLNISPGSSCHCTEPGWFRVCFANMSEETLDLAMKRLKSFV 428 (468)
T ss_pred CcccCCCceEEEEEEchHhcCcCCchHHHHHHHHHHHhCCEEEeCccccCCCCCCEEEEEecCCCHHHHHHHHHHHHHHH
Confidence 99999999999999998655444445556788888888999999999998777899999998668999999999999999
Q ss_pred HHHHHhhhccccccccccccccccccceeEEeecCCCC
Q 044773 249 DSITTTLHNQSNHQSIKNSRRRSFTKWVFRLSFDDPMT 286 (289)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (289)
+.....--+.+.||..|+++|.-.++|+++++|.|--.
T Consensus 429 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 466 (468)
T PLN02450 429 ESDSGRRINKSSHQRLKNLRRKTVSKWVFRLSFHDREP 466 (468)
T ss_pred HhccccccccchhcccccccchhhhccceEEeeccCCc
Confidence 86652222446678889999999999999999988543
No 2
>PLN02376 1-aminocyclopropane-1-carboxylate synthase
Probab=100.00 E-value=1.2e-40 Score=310.37 Aligned_cols=243 Identities=56% Similarity=1.003 Sum_probs=207.7
Q ss_pred CCCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCC-CCCceEEE
Q 044773 9 HLKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTE-VWNRVHIV 87 (289)
Q Consensus 9 ~~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d-~~~~~i~i 87 (289)
+.++|+|+++|||||||.+++.+++++|+++|++++++||+||+|..+.|.+..+.++.++..+.+. .+ ..++++++
T Consensus 197 ~~~~k~l~l~nP~NPTG~~~s~e~l~~L~~~a~~~~i~lI~DEiY~~~~f~~~~~~si~~l~~~~~~--~~~~~~~v~vv 274 (496)
T PLN02376 197 NKKVKGLILTNPSNPLGTMLDKDTLTNLVRFVTRKNIHLVVDEIYAATVFAGGDFVSVAEVVNDVDI--SEVNVDLIHIV 274 (496)
T ss_pred CCCeeEEEEcCCCCCCCccCCHHHHHHHHHHHHHcCCEEEEEcCccccccCCCCcccHHHhhccccc--cccCCCeEEEE
Confidence 4579999999999999999999999999999999999999999999988877777788777543100 00 12467789
Q ss_pred ecCccccCCCCceEEEEEecCHHHHHHHHhccccCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 044773 88 YSLSKDLGLPGFRVGAIYSNDDTVVAAATKMSSFGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEKA 167 (289)
Q Consensus 88 ~s~sK~~g~~G~r~G~i~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 167 (289)
+||||.||+||+|+||++++++.+.........++.++++.|.+++.+++++.++++++++.++.++++++.+.+.|++.
T Consensus 275 ~S~SK~~glpGlRvG~li~~~~~l~~~~~~~~~~~~vs~~~Q~a~~~~L~d~~~~~~~l~~~r~~l~~r~~~l~~~L~~~ 354 (496)
T PLN02376 275 YSLSKDMGLPGFRVGIVYSFNDSVVSCARKMSSFGLVSSQTQLMLASMLSDDQFVDNFLMESSRRLGIRHKVFTTGIKKA 354 (496)
T ss_pred EeccccCCCCcceEEEEEECCHHHHHHHHHHhhcCCCCHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 99999999999999999998788877776666666688999999999999988777889999999999999999999998
Q ss_pred CCceecCCceEEEEEecCccccC-CChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEEecCCHHHHHHHHHHHHH
Q 044773 168 GISCLKSNAGLFCWVDMRHLLSS-NTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKLSMQRLKA 246 (289)
Q Consensus 168 g~~~~~~~~g~~~~i~~~~~~~~-~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ris~~~~~~e~l~~~l~~l~~ 246 (289)
|+++.++++|+|+|++++..... ..+.++.+++..++++.||.+.||..|+...++|+||+++..+++++++++++|++
T Consensus 355 gi~~~~~~aG~flwi~l~~~~~~~~~~~~e~~l~~~ll~~~gV~v~pGs~F~~~~~g~~Ri~fa~~~~~~l~~al~rl~~ 434 (496)
T PLN02376 355 DIACLTSNAGLFAWMDLRHLLRDRNSFESEIELWHIIIDKVKLNVSPGSSFRCTEPGWFRICFANMDDDTLHVALGRIQD 434 (496)
T ss_pred CCcccCCCceEEEEEEchhhhccCCchhHHHHHHHHHHHcCCEEEeCccccCCCCCCEEEEEeeCCCHHHHHHHHHHHHH
Confidence 99999999999999999865432 33345567888899888999999999987778999999986688999999999999
Q ss_pred HHHHHHH
Q 044773 247 FVDSITT 253 (289)
Q Consensus 247 ~l~~~~~ 253 (289)
++.+...
T Consensus 435 ~l~~~~~ 441 (496)
T PLN02376 435 FVSKNKN 441 (496)
T ss_pred HHHHhhh
Confidence 9986554
No 3
>COG0436 Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism]
Probab=100.00 E-value=1.6e-40 Score=300.99 Aligned_cols=226 Identities=28% Similarity=0.500 Sum_probs=198.5
Q ss_pred CCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEec
Q 044773 10 LKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVYS 89 (289)
Q Consensus 10 ~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~s 89 (289)
+++|+|+++|||||||.+++++++++|+++|++|+++||.||+|.++.|++..+.++.+..+ ..++++.+.|
T Consensus 162 ~ktk~i~ln~P~NPTGav~~~~~l~~i~~~a~~~~i~ii~DEiY~~l~yd~~~~~s~~~~~~--------~~~~~i~i~s 233 (393)
T COG0436 162 PKTKAIILNSPNNPTGAVYSKEELKAIVELAREHDIIIISDEIYEELVYDGAEHPSILELAG--------ARDRTITINS 233 (393)
T ss_pred ccceEEEEeCCCCCcCcCCCHHHHHHHHHHHHHcCeEEEEehhhhhcccCCCCcCCHhhcCC--------CcceEEEEec
Confidence 47999999999999999999999999999999999999999999999998876677777743 3588999999
Q ss_pred CccccCCCCceEEEEEecCHHHHHHHHhccc--cCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 044773 90 LSKDLGLPGFRVGAIYSNDDTVVAAATKMSS--FGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEKA 167 (289)
Q Consensus 90 ~sK~~g~~G~r~G~i~~~~~~~~~~~~~~~~--~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 167 (289)
|||.++++|||+||++++++.+.+.+.+... ..+.+.+.|.++..+|+.... ..+.++.++.|++|++.+.+.|.+.
T Consensus 234 ~SK~~~mtGwRvG~~v~~~~~l~~~~~~~~~~~~~~~~~~~Q~aa~~aL~~~~~-~~~~~~~~~~~~~rrd~l~~~l~~~ 312 (393)
T COG0436 234 FSKTYGMTGWRIGWVVGPPEELIAALRKLKSYLTSCAPTPAQYAAIAALNGPQS-DEVVEEMREEYRERRDLLVEALNEI 312 (393)
T ss_pred ccccccccccceeEeecChHHHHHHHHHHHHhcccCCCHHHHHHHHHHhcCccc-hHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999976777666654433 234778999999999998754 4667888899999999999999988
Q ss_pred -CCceec-CCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCC-CCCeEEEEEecCCHHHHHHHHHHH
Q 044773 168 -GISCLK-SNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCT-EPGWFRVCFANMSEDTLKLSMQRL 244 (289)
Q Consensus 168 -g~~~~~-~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~-~~~~~Ris~~~~~~e~l~~~l~~l 244 (289)
|+.+.. |+|+||+|++++...+ ..+++..|++++||.+.||..||.. +.+++||+++. ++++++++++++
T Consensus 313 ~g~~~~~~p~Ga~Y~~~~i~~~~d------~~~f~~~Ll~~~gV~v~PG~~Fg~~~g~~~vRis~~~-~~~~l~~a~~rl 385 (393)
T COG0436 313 GGLSVVKPPEGAFYLFPKIPELLD------SEEFAKKLLEEAGVAVVPGSGFGEPPGEGYVRLSLAT-SEETLEEALRRL 385 (393)
T ss_pred CCeeeccCCCeeEEEEeecCCCCC------HHHHHHHHHHhCCEEEecccccCCCCCCCeEEEEEec-CHHHHHHHHHHH
Confidence 699888 8899999999997633 3689999999999999999999995 88999999996 679999999999
Q ss_pred HHHHHHH
Q 044773 245 KAFVDSI 251 (289)
Q Consensus 245 ~~~l~~~ 251 (289)
+++++..
T Consensus 386 ~~~~~~~ 392 (393)
T COG0436 386 ARFLAEY 392 (393)
T ss_pred HHHHHhc
Confidence 9988764
No 4
>PLN02607 1-aminocyclopropane-1-carboxylate synthase
Probab=100.00 E-value=1.3e-39 Score=300.31 Aligned_cols=243 Identities=60% Similarity=1.057 Sum_probs=208.1
Q ss_pred CCCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEe
Q 044773 9 HLKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVY 88 (289)
Q Consensus 9 ~~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~ 88 (289)
..++|+|+++|||||||.+++++++++|+++|+++++++|+||+|....|++.++.++.++..+.+ ..+..++++++.
T Consensus 198 ~~~vk~lll~nP~NPtG~~~s~e~l~~l~~~~~~~~i~lI~DEiYa~~~f~~~~f~S~~s~~~~~~--~~~~~~~v~vi~ 275 (447)
T PLN02607 198 NIRVRGVLITNPSNPLGATVQRSVLEDILDFVVRKNIHLVSDEIYSGSVFSASEFVSVAEIVEARG--YKGVAERVHIVY 275 (447)
T ss_pred CCCeeEEEEeCCCCCcCcccCHHHHHHHHHHHHHCCCEEEEeccccccccCCCCcccHHHHHhhcC--CCCCcCcEEEEE
Confidence 457899999999999999999999999999999999999999999988787666778777644210 002257899999
Q ss_pred cCccccCCCCceEEEEEecCHHHHHHHHhccccCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 044773 89 SLSKDLGLPGFRVGAIYSNDDTVVAAATKMSSFGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEKAG 168 (289)
Q Consensus 89 s~sK~~g~~G~r~G~i~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g 168 (289)
||||.||++|+|+||+++.++.+...+.....+..+|++.|.+++.+|.+..+.+.++++.++.++++++.+.+.|++.|
T Consensus 276 s~SK~fg~~GlRvG~ivs~n~~l~~~~~~~~~~~~~s~~~q~~~~~~L~d~~~~~~~l~~~r~~l~~~~~~~~~~L~~~g 355 (447)
T PLN02607 276 SLSKDLGLPGFRVGTIYSYNDKVVTTARRMSSFTLVSSQTQHLLASMLSDEEFTENYIRTNRERLRKRYEMIVQGLRRAG 355 (447)
T ss_pred cchhcCCCCcceEEEEEEcCHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 99999999999999999977777776766666656788999999999999887678899999999999999999999999
Q ss_pred CceecCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEEecCCHHHHHHHHHHHHHHH
Q 044773 169 ISCLKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKLSMQRLKAFV 248 (289)
Q Consensus 169 ~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ris~~~~~~e~l~~~l~~l~~~l 248 (289)
+++.++++|+|+|+++++.........+.+++..+++++||.+.||..|+...++|+||+++..++++++++++||.+++
T Consensus 356 i~~~~~~ag~fvw~~L~~~~~~~~~~~e~~l~~~ll~~~gV~v~pG~~f~~~~~g~fRi~fa~~~~~~l~~gl~Ri~~~l 435 (447)
T PLN02607 356 IECLKGNAGLFCWMNLSPLLETPTREGELALWDSILREVKLNISPGSSCHCSEPGWFRVCFANMSEDTLEVALKRIHRFM 435 (447)
T ss_pred CCcccCCeeEEEEEEchHhhcCCCchhHHHHHHHHHHhCCEEEcCccccCCCCCCEEEEEeccCCHHHHHHHHHHHHHHH
Confidence 99999999999999998654332223445788888888999999999999888899999999668999999999999999
Q ss_pred HHHHH
Q 044773 249 DSITT 253 (289)
Q Consensus 249 ~~~~~ 253 (289)
++..+
T Consensus 436 ~~~~~ 440 (447)
T PLN02607 436 DRRKT 440 (447)
T ss_pred HHHHh
Confidence 87665
No 5
>KOG0256 consensus 1-aminocyclopropane-1-carboxylate synthase, and related proteins [Signal transduction mechanisms]
Probab=100.00 E-value=4.4e-39 Score=278.05 Aligned_cols=249 Identities=67% Similarity=1.098 Sum_probs=232.8
Q ss_pred ChHHHhhhCCCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCC
Q 044773 1 AYQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEV 80 (289)
Q Consensus 1 ~l~~~~~~~~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 80 (289)
+++++.+.+.++|.|+++||+||.|.+++++++..+++++.++|+.+|+||+|++-.|+...+.++.++..+.. ..
T Consensus 216 A~~~A~~~~~kVkGvlitNPsNPLG~~~~~e~L~~ll~Fa~~kniHvI~DEIya~sVF~~~~F~Sv~ev~~~~~----~~ 291 (471)
T KOG0256|consen 216 ALNQARKLGLKVKGVLITNPSNPLGTTLSPEELISLLNFASRKNIHVISDEIYAGSVFDKSEFRSVLEVRKDPH----LD 291 (471)
T ss_pred HHHHHHHhCCceeEEEEeCCCCCCCCccCHHHHHHHHHHHhhcceEEEeehhhcccccCccCceEHHHHhhccc----cC
Confidence 35677777889999999999999999999999999999999999999999999999999889999999987541 25
Q ss_pred CCceEEEecCccccCCCCceEEEEEecCHHHHHHHHhccccCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHH
Q 044773 81 WNRVHIVYSLSKDLGLPGFRVGAIYSNDDTVVAAATKMSSFGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKL 160 (289)
Q Consensus 81 ~~~~i~i~s~sK~~g~~G~r~G~i~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l 160 (289)
.+++.++.|+||-||+||+|+|.|...++.+.....++..++.++++.|..++.+|.+..+.+.++++.+++++.+.+++
T Consensus 292 ~~rvHivyslSKD~GlpGfRvGviYS~ne~VvsaA~kmssf~~vSs~tQ~~la~LLSD~~f~~~yl~en~~Rl~~rh~~~ 371 (471)
T KOG0256|consen 292 PDRVHIVYSLSKDFGLPGFRVGVIYSNNEDVVSAATKMSSFGLVSSQTQYLLASLLSDEEFTREYLRENNKRLRIRHRYI 371 (471)
T ss_pred CCcEEEEEEeccccCCCceEEEEEEecChHHHHHHHHHhhccCCcHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHH
Confidence 68899999999999999999999999999999999999999999999999999999998888999999999999999999
Q ss_pred HHHHHhcCCceecCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEEecCCHHHHHHH
Q 044773 161 VSGLEKAGISCLKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKLS 240 (289)
Q Consensus 161 ~~~l~~~g~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ris~~~~~~e~l~~~ 240 (289)
.+.|+++||.+.+..+|+|+|+++.+......+..+.++++.++++.++.+.||+.|.+..+||+|++|++..++.++.+
T Consensus 372 ~~gLk~lgI~cl~s~AGlF~wvDlr~lL~s~tfe~El~Lw~~i~~~vklnlSpG~s~~C~EpGWFRvcFAn~~~~t~~~a 451 (471)
T KOG0256|consen 372 VEGLKALGIPCLKSNAGLFCWVDLRKLLTSLTFEGELELWERILDNVKLNLSPGSSCHCHEPGWFRVCFANMSEETLEVA 451 (471)
T ss_pred HhhHHhcCCceeecCCeeEEEEEhHHhcCcCChHHHHHHHHHHHHhhccccCCCCcceecCCCeEEEEeccCCHHHHHHH
Confidence 99999999999999999999999999999888999999999999888999999999999999999999998788888889
Q ss_pred HHHHHHHHHHHHH
Q 044773 241 MQRLKAFVDSITT 253 (289)
Q Consensus 241 l~~l~~~l~~~~~ 253 (289)
++|+++++..+..
T Consensus 452 m~Ri~~~~~~~~~ 464 (471)
T KOG0256|consen 452 MRRLKQFLDSQVQ 464 (471)
T ss_pred HHHHHHHHHhhhc
Confidence 9999999995443
No 6
>PRK06855 aminotransferase; Validated
Probab=100.00 E-value=6.9e-37 Score=282.02 Aligned_cols=238 Identities=20% Similarity=0.302 Sum_probs=191.5
Q ss_pred hHHHhhhCCCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCC
Q 044773 2 YQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVW 81 (289)
Q Consensus 2 l~~~~~~~~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 81 (289)
++++++.++++++++++|||||||.+++.+++++|+++|++++++||+||+|.++.|.+..+.++.++.+ .
T Consensus 162 l~~~~~~~~~~~~i~l~~P~NPTG~~~s~~~~~~l~~~a~~~~~~II~De~Y~~l~~~~~~~~sl~~~~~---------~ 232 (433)
T PRK06855 162 LENKVKYNPSIAGILLINPDNPTGAVYPKEILREIVDIAREYDLFIICDEIYNNIVYNGKKTVPLSEVIG---------D 232 (433)
T ss_pred HHHHHhcCCCceEEEEECCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCCCHHHHcC---------c
Confidence 3445544457899999999999999999999999999999999999999999998887655667777643 1
Q ss_pred CceEEEecCccccCCCCceEEEEEecC----HHHHHHHH---hc-cccCCCChHHHHHHHHHhCCchHHHHHHHHHHHHH
Q 044773 82 NRVHIVYSLSKDLGLPGFRVGAIYSND----DTVVAAAT---KM-SSFGLVSSQTQYLLSALLSDKKFAQNYISENKKRL 153 (289)
Q Consensus 82 ~~~i~i~s~sK~~g~~G~r~G~i~~~~----~~~~~~~~---~~-~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~ 153 (289)
.++++++||||.+++||+|+||+++++ +.+...+. .. ....+++++.|.++..++.++.+ ++++++.++.|
T Consensus 233 ~~~I~~~S~SK~~~~pGlRiG~ii~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Q~a~~~~l~~~~~-~~~~~~~~~~~ 311 (433)
T PRK06855 233 VPGIALKGISKELPWPGSRCGWIEVYNADKDEVFKKYINSILNAKMIEVCSTTLPQMAIPRIMSHPEY-KNYLKERNKRY 311 (433)
T ss_pred CCeEEEecCccccCCCcceEEEEEEeCCchhhHHHHHHHHHHHhhccccCCChHHHHHHHHhhcCCcH-HHHHHHHHHHH
Confidence 357999999999999999999999842 22222222 21 12234678999999999998777 88999999999
Q ss_pred HHHHHHHHHHHHhc-CCceecCCceEEEEEecCccccC----CC-----------------hhhHHHHHHHHHHhcCeEE
Q 044773 154 KQRHRKLVSGLEKA-GISCLKSNAGLFCWVDMRHLLSS----NT-----------------FEAEMELWKKIVYDVKLNI 211 (289)
Q Consensus 154 ~~~~~~l~~~l~~~-g~~~~~~~~g~~~~i~~~~~~~~----~~-----------------~~~~~~~~~~ll~~~gi~v 211 (289)
+++++.+.+.|++. |+.+.+|+||||+|+++++.... .. ..+..+++..+++++||.+
T Consensus 312 ~~r~~~~~~~L~~~~~~~~~~p~gg~~~w~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v 391 (433)
T PRK06855 312 EKRSNIAYEKLKDVPGLKVNRTNGAFYMTVVFEDGVLNNKQSLPIENPEVKEYVEGLVKGPVSPDKRFVYYLLASTGICV 391 (433)
T ss_pred HHHHHHHHHHHhcCCCeeccCCCeeEEEeeccccccccccccCCcchhhhHHHHHHHHhcCCCchHHHHHHHHHHcCEEE
Confidence 99999999999887 78888999999999999864200 00 0123467778888999999
Q ss_pred eCCCCCCCCCCCeEEEEEecCCHHHHHHHHHHHHHHHHH
Q 044773 212 SPGSSCHCTEPGWFRVCFANMSEDTLKLSMQRLKAFVDS 250 (289)
Q Consensus 212 ~pg~~f~~~~~~~~Ris~~~~~~e~l~~~l~~l~~~l~~ 250 (289)
.||..|+.. ..++||+++..+.+++++++++|++++++
T Consensus 392 ~PG~~F~~~-~~~~Rls~~~~~~~~i~~~~~~l~~~~~~ 429 (433)
T PRK06855 392 VPLSSFCTE-LNGFRVTLLERDEEKFEWIYQTLAEKIEE 429 (433)
T ss_pred ecCCcCCCC-CCceEEEECCCcHHHHHHHHHHHHHHHHH
Confidence 999999853 34699999867899999999999999875
No 7
>PRK09148 aminotransferase; Validated
Probab=100.00 E-value=1.5e-36 Score=277.71 Aligned_cols=241 Identities=24% Similarity=0.357 Sum_probs=197.7
Q ss_pred HHHhhh-CCCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCC
Q 044773 3 QLAQKR-HLKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVW 81 (289)
Q Consensus 3 ~~~~~~-~~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 81 (289)
++++.. .+++++++++|||||||.+++.+++++|+++|++++++||+||+|.++.+++....++.++.. ..
T Consensus 156 ~~~~~~~~~~~~~v~l~~P~NPtG~~~s~~~l~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~s~~~~~~--------~~ 227 (405)
T PRK09148 156 ERAVRHSIPKPIALIVNYPSNPTAYVADLDFYKDVVAFAKKHDIIILSDLAYSEIYFDGNPPPSVLQVPG--------AK 227 (405)
T ss_pred HHHHhhccccceEEEEeCCCCCCCcCCCHHHHHHHHHHHHHcCeEEEEeccchhhhcCCCCCCChhhCCC--------cc
Confidence 444432 257899999999999999999999999999999999999999999988776544455554411 23
Q ss_pred CceEEEecCccccCCCCceEEEEEecCHHHHHHHHhcccc--CCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHH
Q 044773 82 NRVHIVYSLSKDLGLPGFRVGAIYSNDDTVVAAATKMSSF--GLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRK 159 (289)
Q Consensus 82 ~~~i~i~s~sK~~g~~G~r~G~i~~~~~~~~~~~~~~~~~--~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 159 (289)
+++++++||||.+|++|+|+||+++++ .+.+.+.....+ .+++.+.|.++..++.+. +.++++.++.++++++.
T Consensus 228 ~~~i~~~SfSK~~~~pGlR~G~~v~~~-~~i~~l~~~~~~~~~~~~~~~q~~~~~~L~~~---~~~~~~~~~~~~~~r~~ 303 (405)
T PRK09148 228 DVTVEFTSMSKTFSMAGWRMGFAVGNE-RLIAALTRVKSYLDYGAFTPIQVAATAALNGP---QDCIAEMRELYKKRRDV 303 (405)
T ss_pred CcEEEEeccccccCCcchheeeeeCCH-HHHHHHHHHHHHhccCCChHHHHHHHHHHhCc---HHHHHHHHHHHHHHHHH
Confidence 678899999999999999999999954 455555544332 336778999999999754 56788899999999999
Q ss_pred HHHHHHhcCCceecCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEEecCCHHHHHH
Q 044773 160 LVSGLEKAGISCLKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKL 239 (289)
Q Consensus 160 l~~~l~~~g~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ris~~~~~~e~l~~ 239 (289)
+.+.|+++|+.+..|++|+|+|++++..... .+..+++..+++++||.+.||..|+..+++++||+++ .+++++++
T Consensus 304 l~~~L~~~~~~~~~p~~g~f~~~~l~~~~~~---~~~~~~~~~ll~~~gV~v~pg~~f~~~~~~~~Ri~~~-~~~~~l~~ 379 (405)
T PRK09148 304 LVESFGRAGWDIPPPAASMFAWAPIPEAFRH---LGSLEFSKLLVEKADVAVAPGVGFGEHGDGYVRIALV-ENEQRIRQ 379 (405)
T ss_pred HHHHHHHcCCccCCCCeeEEEEEECCCccCC---CCHHHHHHHHHHhCCEEEeCchhhCCCCCCeEEEEec-CCHHHHHH
Confidence 9999999888888899999999998864322 1235688888878899999999997656789999998 58999999
Q ss_pred HHHHHHHHHHHHHHhhhccc
Q 044773 240 SMQRLKAFVDSITTTLHNQS 259 (289)
Q Consensus 240 ~l~~l~~~l~~~~~~~~~~~ 259 (289)
++++|.++++....|+|+.-
T Consensus 380 al~~l~~~l~~~~~~~~~~~ 399 (405)
T PRK09148 380 AARNIKRFLSSADETLHNVV 399 (405)
T ss_pred HHHHHHHHHHHHHHHHhhcc
Confidence 99999999999999998753
No 8
>COG1168 MalY Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities [Amino acid transport and metabolism]
Probab=100.00 E-value=1.6e-36 Score=261.56 Aligned_cols=233 Identities=21% Similarity=0.323 Sum_probs=204.6
Q ss_pred hHHHhhhCCCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCC
Q 044773 2 YQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVW 81 (289)
Q Consensus 2 l~~~~~~~~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 81 (289)
||+++... .+|++++||||||||.+|+.++|.+|.++|++||+.||.||+|+++.+.|+...+++.+-+ +..
T Consensus 150 LE~~~~~~-~vkl~iLCnPHNP~Grvwt~eeL~~i~elc~kh~v~VISDEIHaDlv~~g~~h~~~a~ls~-------~~a 221 (388)
T COG1168 150 LEKAFVDE-RVKLFILCNPHNPTGRVWTKEELRKIAELCLRHGVRVISDEIHADLVLGGHKHIPFASLSE-------RFA 221 (388)
T ss_pred HHHHHhcC-CccEEEEeCCCCCCCccccHHHHHHHHHHHHHcCCEEEeecccccccccCCCccchhhcCh-------hhh
Confidence 56777765 7899999999999999999999999999999999999999999999999877777776644 246
Q ss_pred CceEEEecCccccCCCCceEEEEEecCHHHHHH-HHhc--cccCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHH
Q 044773 82 NRVHIVYSLSKDLGLPGFRVGAIYSNDDTVVAA-ATKM--SSFGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHR 158 (289)
Q Consensus 82 ~~~i~i~s~sK~~g~~G~r~G~i~~~~~~~~~~-~~~~--~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 158 (289)
++.+.+.|.||+|+++|+++++++++++.+... .+++ .....+|.++..+..++++.+ ..|+.++.+.++.+++
T Consensus 222 ~~~it~~saSKtFNlaGL~~a~~Ii~n~~lr~~~~~~l~~~~~~~~n~lg~~A~~aAY~~G---~~WLd~L~~yl~~N~~ 298 (388)
T COG1168 222 DNSITLTSASKTFNLAGLKCAYIIISNRELRAKFLKRLKRNGLHGPSALGIIATEAAYNQG---EPWLDELLEYLKDNRD 298 (388)
T ss_pred cceEEEeeccccccchhhhheeEEecCHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHhc---hHHHHHHHHHHHHHHH
Confidence 889999999999999999999999998887443 3333 234458889999999999988 7899999999999999
Q ss_pred HHHHHHHhc--CCceecCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEEecCCHHH
Q 044773 159 KLVSGLEKA--GISCLKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDT 236 (289)
Q Consensus 159 ~l~~~l~~~--g~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ris~~~~~~e~ 236 (289)
++.+.+++. ++++..|+|.|.+|+++....-. +.+....++++.+|++.+|..||..+++++|++++. +.+.
T Consensus 299 ~~~~~l~~~~P~v~v~~p~gTYL~WLD~r~l~l~-----d~~l~~~ll~~akVal~~G~~FG~~g~gf~RlN~ac-pr~~ 372 (388)
T COG1168 299 YVADFLNKHLPGVKVTEPQGTYLAWLDCRELGLD-----DSELAEFLLEEAKVALSPGSTFGEEGSGFVRLNFAC-PRAI 372 (388)
T ss_pred HHHHHHHhhCCCcEEecCCCceeeeeeccccCCC-----hHHHHHHHHHhhcEeccCCCccCcCCCceEEEecCC-CHHH
Confidence 999999988 89999999999999999976433 246888899999999999999999999999999996 9999
Q ss_pred HHHHHHHHHHHHHHH
Q 044773 237 LKLSMQRLKAFVDSI 251 (289)
Q Consensus 237 l~~~l~~l~~~l~~~ 251 (289)
+++++++|+.+++..
T Consensus 373 L~eal~ri~~al~~~ 387 (388)
T COG1168 373 LEEALERLKRALKKR 387 (388)
T ss_pred HHHHHHHHHHHHhcc
Confidence 999999999887653
No 9
>PRK08636 aspartate aminotransferase; Provisional
Probab=100.00 E-value=3.4e-36 Score=275.35 Aligned_cols=232 Identities=23% Similarity=0.353 Sum_probs=187.9
Q ss_pred HHHhhh-CCCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCC
Q 044773 3 QLAQKR-HLKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVW 81 (289)
Q Consensus 3 ~~~~~~-~~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 81 (289)
+++++. .+++++++++|||||||.++|.+++++|+++|++++++||+||+|.++.+++....++.++.. ..
T Consensus 166 ~~~~~~~~~~~~~i~~~~P~NPTG~~~s~~~~~~l~~~a~~~~~~II~De~Y~~l~~~~~~~~~~~~~~~--------~~ 237 (403)
T PRK08636 166 EKALRESSPKPKYVVVNFPHNPTTATVEKSFYERLVALAKKERFYIISDIAYADITFDGYKTPSILEVEG--------AK 237 (403)
T ss_pred HHHHhhccCCceEEEEeCCCCCCCccCCHHHHHHHHHHHHHcCcEEEEeccchhhccCCCCCCChhcCCC--------cc
Confidence 444443 257899999999999999999999999999999999999999999998776655556665521 23
Q ss_pred CceEEEecCccccCCCCceEEEEEecCHHHHHHHHhccc--cCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHH
Q 044773 82 NRVHIVYSLSKDLGLPGFRVGAIYSNDDTVVAAATKMSS--FGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRK 159 (289)
Q Consensus 82 ~~~i~i~s~sK~~g~~G~r~G~i~~~~~~~~~~~~~~~~--~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 159 (289)
+++++++||||.+|+||+|+||++++++ +.+.+..... ....+++.|.++..++... ..++++.++.++++++.
T Consensus 238 ~~~i~~~S~SK~~~~~GlRiG~iv~~~~-li~~~~~~~~~~~~~~~~~~q~~~~~~~~~~---~~~~~~~~~~~~~~~~~ 313 (403)
T PRK08636 238 DVAVESYTLSKSYNMAGWRVGFVVGNKK-LVGALKKIKSWLDYGMFTPIQVAATIALDGD---QSCVEEIRETYRKRRDV 313 (403)
T ss_pred ccEEEEEecccccCCccceeeeeeCCHH-HHHHHHHHHHHhcccCChHHHHHHHHHHhCc---HHHHHHHHHHHHHHHHH
Confidence 6778899999999999999999999654 4444443332 2335677888877776533 56788999999999999
Q ss_pred HHHHHHhcCCceecCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEEecCCHHHHHH
Q 044773 160 LVSGLEKAGISCLKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKL 239 (289)
Q Consensus 160 l~~~l~~~g~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ris~~~~~~e~l~~ 239 (289)
+.+.|++.|+.+..|++|+|+|+++++.... .+..+++..+++++||.+.||..|+..+++++||+++ .+++++++
T Consensus 314 l~~~L~~~~~~~~~p~~g~~~~~~l~~~~~~---~~~~~l~~~ll~~~gV~v~pg~~f~~~~~~~iRi~~~-~~~~~l~~ 389 (403)
T PRK08636 314 LIESFANAGWELQKPRASMFVWAKIPEPARH---LGSLEFSKQLLTEAKVAVSPGIGFGEYGDEYVRIALI-ENENRIRQ 389 (403)
T ss_pred HHHHHHHCCCcccCCCcceEEEEECCCccCC---CCHHHHHHHHHHhCCEEEecchhhCcCCCCeEEEEec-CCHHHHHH
Confidence 9999999888888999999999999864321 1235688888888999999999998766789999999 58999999
Q ss_pred HHHHHHHHHHH
Q 044773 240 SMQRLKAFVDS 250 (289)
Q Consensus 240 ~l~~l~~~l~~ 250 (289)
++++|+++++.
T Consensus 390 ~~~rl~~~l~~ 400 (403)
T PRK08636 390 AARNIKKFLKE 400 (403)
T ss_pred HHHHHHHHHHh
Confidence 99999999865
No 10
>PRK07590 L,L-diaminopimelate aminotransferase; Validated
Probab=100.00 E-value=5e-36 Score=274.79 Aligned_cols=222 Identities=23% Similarity=0.287 Sum_probs=181.3
Q ss_pred CCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEec
Q 044773 10 LKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVYS 89 (289)
Q Consensus 10 ~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~s 89 (289)
+++|+|+++|||||||.+++.+++++|+++|++++++||+||+|.++.+++....++.++-+ ..+++++++|
T Consensus 175 ~~~k~i~l~nP~NPTG~~~s~~~~~~l~~~a~~~~~~iI~De~Y~~~~~~~~~~~~~~~~~~--------~~~~vi~~~S 246 (409)
T PRK07590 175 EKVDIIYLCFPNNPTGTVLTKEQLKAWVDYAKENGSLILFDAAYEAFISDPSLPHSIYEIEG--------ARECAIEFRS 246 (409)
T ss_pred cCceEEEEeCCCCCcCCcCCHHHHHHHHHHHHHcCeEEEEEccchhhccCCCCCcchhhCCC--------cccceEEEec
Confidence 47899999999999999999999999999999999999999999988765543445554411 2357899999
Q ss_pred CccccCCCCceEEEEEecCHHHHH-----------HHHh-c-cccCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHH
Q 044773 90 LSKDLGLPGFRVGAIYSNDDTVVA-----------AATK-M-SSFGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQR 156 (289)
Q Consensus 90 ~sK~~g~~G~r~G~i~~~~~~~~~-----------~~~~-~-~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~ 156 (289)
|||++|++|+|+||++++++.+.. .... . ..+..++.+.|.++..++.... ..++++.++.++++
T Consensus 247 fSK~~~~pGlRiG~~i~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~q~a~~~~l~~~~--~~~~~~~~~~~~~~ 324 (409)
T PRK07590 247 FSKTAGFTGTRCAYTVVPKELKGKTSDGEGVSLNSLWNRRQSTKFNGVSYIVQRAAEAVYSPEG--KAQIKELIDYYMEN 324 (409)
T ss_pred CccccCCcCceeEEEEcCHHHhhhccccchhhhHHHHHHHHhhcccCcCHHHHHHHHHHhcCCc--HHHHHHHHHHHHHH
Confidence 999999999999999997655431 1111 1 2233477899999988887542 56788999999999
Q ss_pred HHHHHHHHHhcCCceecCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEEecCCHHH
Q 044773 157 HRKLVSGLEKAGISCLKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDT 236 (289)
Q Consensus 157 ~~~l~~~l~~~g~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ris~~~~~~e~ 236 (289)
++.+.+.|+++|+++.++++|+|+|++++...+. .+++..+++++||.+.||..|+..+.+++||+++ .++++
T Consensus 325 r~~l~~~L~~~~~~~~~~~g~~f~wi~~~~~~~~------~~~~~~l~~~~gv~v~pg~~f~~~~~~~iRi~~~-~~~~~ 397 (409)
T PRK07590 325 AKIIREGLESAGFEVYGGVNAPYIWVKTPDGMSS------WDFFDKLLQEANVVGTPGSGFGPSGEGYFRLSAF-GSREN 397 (409)
T ss_pred HHHHHHHHHhcCCceecCCcceEEEEECCCCCCH------HHHHHHHHHHCCEEEeChhHhCCCCCCEEEEEcc-CCHHH
Confidence 9999999999898888889999999999864332 4678888888899999999998766789999986 48999
Q ss_pred HHHHHHHHHHHH
Q 044773 237 LKLSMQRLKAFV 248 (289)
Q Consensus 237 l~~~l~~l~~~l 248 (289)
+++++++|++++
T Consensus 398 l~~~l~rl~~~~ 409 (409)
T PRK07590 398 VLEAMERIKKAL 409 (409)
T ss_pred HHHHHHHHHhhC
Confidence 999999998753
No 11
>PRK07681 aspartate aminotransferase; Provisional
Probab=100.00 E-value=7.8e-36 Score=272.69 Aligned_cols=218 Identities=20% Similarity=0.325 Sum_probs=183.4
Q ss_pred CCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEec
Q 044773 10 LKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVYS 89 (289)
Q Consensus 10 ~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~s 89 (289)
+++++|+++|||||||.+++.+++++|+++|++++++||+||+|.++.+++....++.++.+ ..+++++++|
T Consensus 165 ~~~k~v~l~~P~NPTG~~~s~~~~~~i~~~a~~~~~~iI~De~y~~~~~~~~~~~~~~~~~~--------~~~~~i~~~S 236 (399)
T PRK07681 165 DKAKMMILNFPGNPVPAMAHEDFFKEVIAFAKKHNIIVVHDFAYAEFYFDGNKPISFLSVPG--------AKEVGVEINS 236 (399)
T ss_pred ccceEEEEeCCCCCcCcCCCHHHHHHHHHHHHHcCeEEEEeccchhheeCCCCCCChhhCCC--------CcccEEEEee
Confidence 47899999999999999999999999999999999999999999998776655556555522 3468899999
Q ss_pred CccccCCCCceEEEEEecCHHHHHHHHhccc--cCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 044773 90 LSKDLGLPGFRVGAIYSNDDTVVAAATKMSS--FGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEKA 167 (289)
Q Consensus 90 ~sK~~g~~G~r~G~i~~~~~~~~~~~~~~~~--~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 167 (289)
|||.+|++|+|+||+++++ .+.+.+..... ...++.+.|.++..++.++ .+++++.++.++++++.+.+.|++.
T Consensus 237 ~SK~~~~~GlRiG~~i~~~-~l~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~---~~~~~~~~~~~~~~~~~l~~~L~~~ 312 (399)
T PRK07681 237 LSKSYSLAGSRIGYMIGNE-EIVRALTQFKSNTDYGVFLPIQKAACAALRNG---AAFCEKNRGIYQERRDTLVDGFRTF 312 (399)
T ss_pred cccccCCccceeEEEecCH-HHHHHHHHHHhhcccCCCHHHHHHHHHHHhCc---HHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 9999999999999999964 44454544332 2347789999999999875 3567888899999999999999998
Q ss_pred CCceecCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEEecCCHHHHHHHHHHHHH
Q 044773 168 GISCLKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKLSMQRLKA 246 (289)
Q Consensus 168 g~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ris~~~~~~e~l~~~l~~l~~ 246 (289)
|+++..|++|+|+|++++...+ ..+++..+++++||.+.||..|+..+++++||+++. +++++++++++|++
T Consensus 313 g~~~~~p~~g~f~~~~l~~~~~------~~~~~~~l~~~~gv~v~pg~~f~~~~~~~iRis~~~-~~~~~~~~l~~l~~ 384 (399)
T PRK07681 313 GWNVDKPAGSMFVWAEIPKGWT------SLSFAYALMDRANVVVTPGHAFGPHGEGFVRIALVQ-DEEVLQQAVENIRN 384 (399)
T ss_pred CCcccCCCeeeEEEEECCCCCC------HHHHHHHHHHhCCEEEeCChhhCcCCCCeEEEEecC-CHHHHHHHHHHHHH
Confidence 9888889999999999975432 256888888778999999999986667899999994 78999999999987
No 12
>PRK06207 aspartate aminotransferase; Provisional
Probab=100.00 E-value=1.7e-35 Score=270.73 Aligned_cols=224 Identities=17% Similarity=0.311 Sum_probs=182.0
Q ss_pred CCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEec
Q 044773 10 LKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVYS 89 (289)
Q Consensus 10 ~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~s 89 (289)
+++++++++|||||||.+++.+++++|+++|++++++||+||+|..+.+++....++..+.. ..+++++++|
T Consensus 177 ~~~k~v~l~~P~NPTG~~~s~e~l~~l~~~a~~~~~~iI~De~Y~~~~~~~~~~~~~~~~~~--------~~~~vi~i~S 248 (405)
T PRK06207 177 AGVRVFLFSNPNNPAGVVYSAEEIAQIAALARRYGATVIVDQLYSRLLYDGTSYTHLRALPI--------DPENVITIMG 248 (405)
T ss_pred hcCeEEEECCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCCchhcCCC--------CcCcEEEEec
Confidence 35889999999999999999999999999999999999999999998887655455544411 3478999999
Q ss_pred CccccCCCCceEEEEEecCHHHHHHHHhcccc--CCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 044773 90 LSKDLGLPGFRVGAIYSNDDTVVAAATKMSSF--GLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEKA 167 (289)
Q Consensus 90 ~sK~~g~~G~r~G~i~~~~~~~~~~~~~~~~~--~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 167 (289)
|||+++++|+|+||+++++ .+.+.+...... ...+.+.|.++..++.++ ..++++..+.++++++.+.+.|++.
T Consensus 249 fSK~~~lpGlRiG~ii~~~-~l~~~~~~~~~~~~~~~~~~~q~a~~~~l~~~---~~~~~~~~~~~~~~r~~l~~~L~~~ 324 (405)
T PRK06207 249 PSKTESLSGYRLGVAFGSP-AIIDRMEKLQAIVSLRAAGYSQAVLRTWFSEP---DGWMKDRIARHQAIRDDLLRVLRGV 324 (405)
T ss_pred chhhccCcccceEEEEcCH-HHHHHHHHHHhHhccCCCHHHHHHHHHHHhCc---HHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 9999999999999999965 444444443322 235668999999999864 2345666677788889999999887
Q ss_pred -CCceecCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEEecCCHHHHHHHHHHHHH
Q 044773 168 -GISCLKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKLSMQRLKA 246 (289)
Q Consensus 168 -g~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ris~~~~~~e~l~~~l~~l~~ 246 (289)
++++.+|++|+|+|++++... .+..+++..+++++||.+.||..|+...++++||+++. +++++++++++|++
T Consensus 325 ~~~~~~~p~gg~fl~~~l~~~~-----~~~~~~~~~l~~~~gV~v~pG~~F~~~~~~~~Ris~~~-~~~~l~~al~rl~~ 398 (405)
T PRK06207 325 EGVFVRAPQAGSYLFPRLPRLA-----VSLHDFVKILRLQAGVIVTPGTEFSPHTADSIRLNFSQ-DHAAAVAAAERIAQ 398 (405)
T ss_pred CCceecCCCeeEEEEEeCcccC-----CCHHHHHHHHHHhcCEEEeCchHhCCCCCCeEEEEecC-CHHHHHHHHHHHHH
Confidence 788888999999999997521 12246888887788999999999986667899999995 88999999999999
Q ss_pred HHHHH
Q 044773 247 FVDSI 251 (289)
Q Consensus 247 ~l~~~ 251 (289)
++++.
T Consensus 399 ~l~~~ 403 (405)
T PRK06207 399 LIERY 403 (405)
T ss_pred HHHHh
Confidence 98764
No 13
>PLN00175 aminotransferase family protein; Provisional
Probab=100.00 E-value=2.3e-35 Score=270.40 Aligned_cols=222 Identities=23% Similarity=0.400 Sum_probs=183.9
Q ss_pred CCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEec
Q 044773 10 LKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVYS 89 (289)
Q Consensus 10 ~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~s 89 (289)
+++|+|+++|||||||.+++.+++++|+++|++++++||+||+|..+.+++. ..++.++.+ ..+++++++|
T Consensus 186 ~~~k~i~i~~p~NPtG~~~s~~~l~~l~~~a~~~~~~ii~De~Y~~l~~~~~-~~s~~~~~~--------~~~~vi~i~S 256 (413)
T PLN00175 186 SKTRAILINTPHNPTGKMFTREELELIASLCKENDVLAFTDEVYDKLAFEGD-HISMASLPG--------MYERTVTMNS 256 (413)
T ss_pred cCceEEEecCCCCCCCcCCCHHHHHHHHHHHHHcCcEEEEecccCccccCCc-ccChhhCCC--------CcCcEEEEec
Confidence 4689999999999999999999999999999999999999999999877543 345555522 3478999999
Q ss_pred CccccCCCCceEEEEEecCHHHHHHHHhcc--ccCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 044773 90 LSKDLGLPGFRVGAIYSNDDTVVAAATKMS--SFGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEKA 167 (289)
Q Consensus 90 ~sK~~g~~G~r~G~i~~~~~~~~~~~~~~~--~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 167 (289)
|||.||++|+|+||++++++.+ +.+.... ...+++++.|.++..+|+.. +.++++.++.|+++++.+.+.|++.
T Consensus 257 fSK~~~~~G~RiG~~v~~~~l~-~~l~~~~~~~~~~~s~~~Q~a~~~~l~~~---~~~~~~~~~~~~~~~~~l~~~L~~~ 332 (413)
T PLN00175 257 LGKTFSLTGWKIGWAIAPPHLT-WGVRQAHSFLTFATATPMQWAAVAALRAP---ESYYEELKRDYSAKKDILVEGLKEV 332 (413)
T ss_pred chhhccCcchheeeeEeCHHHH-HHHHHHHhhccCCCCHHHHHHHHHHHhCC---HHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 9999999999999999965544 4343332 22447889999999999875 5678999999999999999999999
Q ss_pred CCceecCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCC---CCCCeEEEEEecCCHHHHHHHHHHH
Q 044773 168 GISCLKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHC---TEPGWFRVCFANMSEDTLKLSMQRL 244 (289)
Q Consensus 168 g~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~---~~~~~~Ris~~~~~~e~l~~~l~~l 244 (289)
|+++.+|+||+|+|+++.... ..+..+++..+++++||.+.||..|+. .+.+++||+++. +++++++++++|
T Consensus 333 g~~~~~p~g~~f~~~~~~~~~----~~~~~~~~~~ll~~~gV~v~pg~~F~~~~~~~~~~iRls~~~-~~e~l~~~~~rL 407 (413)
T PLN00175 333 GFKVYPSSGTYFVMVDHTPFG----FENDIAFCEYLIEEVGVAAIPPSVFYLNPEDGKNLVRFAFCK-DEETLRAAVERM 407 (413)
T ss_pred CCeecCCCeeEEEEEeccccC----CCCHHHHHHHHHHhCCEEEeCchHhCCCCCCCCCEEEEEEcC-CHHHHHHHHHHH
Confidence 999999999999999975311 012356888888889999999999864 235799999995 899999999999
Q ss_pred HHHHH
Q 044773 245 KAFVD 249 (289)
Q Consensus 245 ~~~l~ 249 (289)
+++++
T Consensus 408 ~~~~~ 412 (413)
T PLN00175 408 KTKLK 412 (413)
T ss_pred HHHHh
Confidence 98765
No 14
>PRK07309 aromatic amino acid aminotransferase; Validated
Probab=100.00 E-value=6.4e-35 Score=265.97 Aligned_cols=232 Identities=22% Similarity=0.381 Sum_probs=188.1
Q ss_pred hHHHhhhC-CCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCC
Q 044773 2 YQLAQKRH-LKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEV 80 (289)
Q Consensus 2 l~~~~~~~-~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 80 (289)
+++++... ++++++++++||||||.+++.+++++|+++|+++++++|+||+|.++.+++....++.+. .
T Consensus 156 l~~~~~~~~~~~~~i~l~~P~NPtG~~~s~~~~~~l~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~----------~ 225 (391)
T PRK07309 156 LEKAILEQGDKLKAVILNYPANPTGVTYSREQIKALADVLKKYDIFVISDEVYSELTYTGEPHVSIAEY----------L 225 (391)
T ss_pred HHHHhhccCCCeEEEEEECCCCCCCcCcCHHHHHHHHHHHHHcCcEEEEEccccceeeCCCCCCCHHHh----------c
Confidence 34444443 368999999999999999999999999999999999999999999988766555566555 2
Q ss_pred CCceEEEecCccccCCCCceEEEEEecCHHHHHHHHhcc-ccCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHH
Q 044773 81 WNRVHIVYSLSKDLGLPGFRVGAIYSNDDTVVAAATKMS-SFGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRK 159 (289)
Q Consensus 81 ~~~~i~i~s~sK~~g~~G~r~G~i~~~~~~~~~~~~~~~-~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 159 (289)
.+++++++||||.+|++|+|+||++++++.+........ ....++++.|.++..++.++.+ +....++.++++++.
T Consensus 226 ~~~~i~~~S~SK~~g~~GlRvG~~v~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~---~~~~~~~~~~~~~~~ 302 (391)
T PRK07309 226 PDQTILINGLSKSHAMTGWRIGLIFAPAEFTAQLIKSHQYLVTAATTMAQFAAVEALTNGKD---DALPMKKEYIKRRDY 302 (391)
T ss_pred cCCEEEEecChhhccCccceeEEEEeCHHHHHHHHHHHhhcccCCChHHHHHHHHHHhCChh---HHHHHHHHHHHHHHH
Confidence 368999999999999999999999997554444333222 2234678999999999987643 245677889999999
Q ss_pred HHHHHHhcCCceecCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEEecCCHHHHHH
Q 044773 160 LVSGLEKAGISCLKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKL 239 (289)
Q Consensus 160 l~~~l~~~g~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ris~~~~~~e~l~~ 239 (289)
+.+.|++.|+.+.+|++|+|+|++++..... +..+++..+++++||.+.||..|+..+++++||+++. +++++++
T Consensus 303 ~~~~l~~~~~~~~~p~gg~~~~~~l~~~~~~----~~~~~~~~l~~~~gv~v~pg~~f~~~~~~~iRi~~~~-~~~~l~~ 377 (391)
T PRK07309 303 IIEKMTDLGFKIIKPDGAFYIFAKIPAGYNQ----DSFKFLQDFARKKAVAFIPGAAFGPYGEGYVRLSYAA-SMETIKE 377 (391)
T ss_pred HHHHHHHCCCeecCCCeeEEEEEECCCCCCC----CHHHHHHHHHHhCCEEEeCchhhCCCCCCEEEEEecC-CHHHHHH
Confidence 9999999899999999999999998754321 2246777777788999999999987778899999985 7899999
Q ss_pred HHHHHHHHHHHH
Q 044773 240 SMQRLKAFVDSI 251 (289)
Q Consensus 240 ~l~~l~~~l~~~ 251 (289)
++++|++++++.
T Consensus 378 ~i~~l~~~~~~~ 389 (391)
T PRK07309 378 AMKRLKEYMEEH 389 (391)
T ss_pred HHHHHHHHHHhh
Confidence 999999988654
No 15
>PRK07366 succinyldiaminopimelate transaminase; Validated
Probab=100.00 E-value=1.6e-35 Score=269.64 Aligned_cols=221 Identities=19% Similarity=0.320 Sum_probs=175.8
Q ss_pred CCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCC-ccChhhhhhccccccCCCCCceEEEe
Q 044773 10 LKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPG-FVSIMEILKDRNCENTEVWNRVHIVY 88 (289)
Q Consensus 10 ~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~i~i~ 88 (289)
+++|+++++|||||||.+++.+++++|+++|++++++||+||+|.++.+++.. ..++.++.+ ..+++++++
T Consensus 164 ~~~k~i~l~~p~NPTG~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~--------~~~~vi~~~ 235 (388)
T PRK07366 164 AQARLMVLSYPHNPTTAIAPLSFFQEAVAFCQQHDLVLVHDFPYVDLVFDGEVEPPSILQADP--------EKSVSIEFF 235 (388)
T ss_pred ccceEEEEeCCCCCCCccCCHHHHHHHHHHHHHcCeEEEEecchhhcccCCCCCCCChhhCCC--------CcccEEEEe
Confidence 46899999999999999999999999999999999999999999998776543 445555422 235689999
Q ss_pred cCccccCCCCceEEEEEecCHHHHHHHHhccccCC--C-ChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044773 89 SLSKDLGLPGFRVGAIYSNDDTVVAAATKMSSFGL--V-SSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLE 165 (289)
Q Consensus 89 s~sK~~g~~G~r~G~i~~~~~~~~~~~~~~~~~~~--~-~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 165 (289)
||||++|++|+|+||++++++ +.+.+........ . +.+.+.+++.+... ++++++.++.++++++.+.+.|+
T Consensus 236 SfSK~~g~~GlRiG~~v~~~~-li~~l~~~~~~~~~~~~~~~~~~a~~~l~~~----~~~l~~~~~~~~~~r~~l~~~L~ 310 (388)
T PRK07366 236 TLSKSYNMGGFRIGFAIGNAQ-LIQALRQVKAVVDFNQYRGILNGAIAALTGP----QATVQQTVQIFRQRRDAFINALH 310 (388)
T ss_pred ecccccCCcchhheehcCCHH-HHHHHHHHHhhcccCCCHHHHHHHHHHHhCc----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999554 4554544433221 2 23445555554433 56789999999999999999999
Q ss_pred hcCCceecCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEEecCCHHHHHHHHHHHH
Q 044773 166 KAGISCLKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKLSMQRLK 245 (289)
Q Consensus 166 ~~g~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ris~~~~~~e~l~~~l~~l~ 245 (289)
++|+.+..|++|+|+|++++..... +..+++..+++++||.+.||..|+..+.+++||+++. +++++++++++|+
T Consensus 311 ~~~~~~~~p~~g~f~~~~~~~~~~~----~~~~~~~~l~~~~gv~v~pg~~f~~~~~~~iRi~~~~-~~~~l~~~l~rl~ 385 (388)
T PRK07366 311 QIGWPVPLPEATMYVWAKLPEPWQG----NSVEFCTQLVAQTGVAASPGSGFGKSGEGYVRFALVH-DPDILEEAVERIA 385 (388)
T ss_pred HCCCcccCCCeeEEEEEECCcccCC----CHHHHHHHHHHhCCEEEeCchHhCcCCCCeEEEEecC-CHHHHHHHHHHHH
Confidence 9888878899999999999864321 1246778888889999999999986667899999985 7999999999998
Q ss_pred HHH
Q 044773 246 AFV 248 (289)
Q Consensus 246 ~~l 248 (289)
+++
T Consensus 386 ~~l 388 (388)
T PRK07366 386 AFL 388 (388)
T ss_pred HhC
Confidence 763
No 16
>PRK08068 transaminase; Reviewed
Probab=100.00 E-value=4.6e-35 Score=266.80 Aligned_cols=219 Identities=20% Similarity=0.314 Sum_probs=177.8
Q ss_pred CCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEec
Q 044773 10 LKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVYS 89 (289)
Q Consensus 10 ~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~s 89 (289)
.++++|+++|||||||.++|.+++++|+++|++++++||+||+|.++.+++....++.... +..+++++++|
T Consensus 166 ~~~~~v~l~~P~NPTG~~~s~~~~~~l~~la~~~~~~ii~Deay~~~~~~~~~~~s~~~~~--------~~~~~~i~~~S 237 (389)
T PRK08068 166 EKAKLMYLNYPNNPTGAVATKAFFEETVAFAKKHNIGVVHDFAYGAIGFDGQKPVSFLQTP--------GAKDVGIELYT 237 (389)
T ss_pred ccceEEEEECCCCCCCCcCCHHHHHHHHHHHHHcCeEEEEehhhhhhccCCCCCcChhhCC--------CccCCEEEEec
Confidence 3689999999999999999999999999999999999999999998877653334444332 23467899999
Q ss_pred CccccCCCCceEEEEEecCHHHHHHHHhccccC--CCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 044773 90 LSKDLGLPGFRVGAIYSNDDTVVAAATKMSSFG--LVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEKA 167 (289)
Q Consensus 90 ~sK~~g~~G~r~G~i~~~~~~~~~~~~~~~~~~--~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 167 (289)
|||.||++|+|+||+++++ .+.+.+....... +.+++.|.++..++.+. .+++++.++.++++++.+.+.|+++
T Consensus 238 ~SK~~g~~GlRiG~~~~~~-~l~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~---~~~~~~~~~~~~~~r~~~~~~L~~~ 313 (389)
T PRK08068 238 LSKTFNMAGWRVAFAVGNE-SVIEAINLLQDHLFVSLFGAIQDAAIEALLSD---QSCVAELVARYESRRNAFISACREI 313 (389)
T ss_pred chhccCCccceeEeEecCH-HHHHHHHHHHhhccCCCChHHHHHHHHHHhCc---HHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 9999999999999999954 4555444443322 23345777777777654 4668889999999999999999999
Q ss_pred CCceecCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEEecCCHHHHHHHHHHHHHH
Q 044773 168 GISCLKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKLSMQRLKAF 247 (289)
Q Consensus 168 g~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ris~~~~~~e~l~~~l~~l~~~ 247 (289)
|+.+.+|++|+|+|++++...+ ..+++..+++++||.+.||..|+..+++++||+++. +++++.+++++|+++
T Consensus 314 g~~~~~~~g~~~~~v~~~~~~~------~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~-~~~~l~~al~~l~~~ 386 (389)
T PRK08068 314 GWEVDAPKGSFFAWMPVPKGYT------SEQFADLLLEKAHVAVAPGNGFGEHGEGYVRVGLLT-DEERLREAVERIGKL 386 (389)
T ss_pred CCcccCCCeeEEEEEECCCCCC------HHHHHHHHHHhCCEEEecchHhCccCCCeEEEEEcC-CHHHHHHHHHHHHHh
Confidence 9988899999999999976432 256888888778999999999987667899999985 788999999988763
No 17
>PRK07682 hypothetical protein; Validated
Probab=100.00 E-value=2.8e-35 Score=267.26 Aligned_cols=223 Identities=21% Similarity=0.419 Sum_probs=183.9
Q ss_pred CCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEec
Q 044773 10 LKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVYS 89 (289)
Q Consensus 10 ~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~s 89 (289)
++++++++++||||||.+++.+++++|+++|+++++++|+||+|.++.+++. ..++..+.+ ..+++++++|
T Consensus 153 ~~~~~v~~~~p~NPtG~~~s~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~-~~~~~~~~~--------~~~~~i~~~S 223 (378)
T PRK07682 153 AKTKAILLCSPNNPTGAVLNKSELEEIAVIVEKHDLIVLSDEIYAELTYDEA-YTSFASIKG--------MRERTILISG 223 (378)
T ss_pred cccEEEEEECCCCCcCcCcCHHHHHHHHHHHHHcCcEEEEehhhhhcccCCC-CCChhhccc--------ccCCEEEEec
Confidence 4689999999999999999999999999999999999999999999877543 334444421 3468999999
Q ss_pred CccccCCCCceEEEEEecCHHHHHHHHhcc--ccCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 044773 90 LSKDLGLPGFRVGAIYSNDDTVVAAATKMS--SFGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEKA 167 (289)
Q Consensus 90 ~sK~~g~~G~r~G~i~~~~~~~~~~~~~~~--~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 167 (289)
|||.+|++|+|+||++++++ +.+.+.... ....++++.|.++..+|+++ ..++++.++.++++++.+.+.|+++
T Consensus 224 ~SK~~~~~GlR~G~~~~~~~-~i~~l~~~~~~~~~~~~~~~q~a~~~~l~~~---~~~~~~~~~~~~~~~~~~~~~L~~~ 299 (378)
T PRK07682 224 FSKGFAMTGWRLGFIAAPVY-FSEAMLKIHQYSMMCAPTMAQFAALEALRAG---NDDVIRMRDSYRKRRNFFVTSFNEI 299 (378)
T ss_pred CcccccChhhhhhhhhcCHH-HHHHHHHHHHhhccCCCHHHHHHHHHHHhCC---hHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 99999999999999999654 544443332 22347789999999999875 3457888999999999999999999
Q ss_pred CCceecCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEEecCCHHHHHHHHHHHHHH
Q 044773 168 GISCLKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKLSMQRLKAF 247 (289)
Q Consensus 168 g~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ris~~~~~~e~l~~~l~~l~~~ 247 (289)
|+++..|++|+|+|+.++... .+..+++..+++++||.+.||..|+..+++++||+++. +.+++++++++|+++
T Consensus 300 ~~~~~~p~g~~~~~~~~~~~~-----~~~~~~~~~ll~~~gv~v~pg~~f~~~~~~~iRis~~~-~~~~l~~~l~~l~~~ 373 (378)
T PRK07682 300 GLTCHVPGGAFYAFPSISSTG-----LSSEEFAEQLLLEEKVAVVPGSVFGESGEGFIRCSYAT-SLEQLQEAMKRMKRF 373 (378)
T ss_pred CCccCCCCeeEEEEEeccCCC-----CCHHHHHHHHHHhCCEEEcCchhhCcCCCCeEEEEeCC-CHHHHHHHHHHHHHH
Confidence 999899999999999875321 12256888888788999999999986667899999996 789999999999998
Q ss_pred HHHH
Q 044773 248 VDSI 251 (289)
Q Consensus 248 l~~~ 251 (289)
++..
T Consensus 374 l~~~ 377 (378)
T PRK07682 374 VENK 377 (378)
T ss_pred Hhhc
Confidence 8653
No 18
>TIGR03540 DapC_direct LL-diaminopimelate aminotransferase. This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known aminotransferases, succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh). Although there is no experimental characterization of any of the sequences in this clade, a direct pathway is known in plants and Chlamydia, so it seems quite reasonable that these enzymes catalyze the same transformation.
Probab=100.00 E-value=6e-35 Score=265.52 Aligned_cols=218 Identities=25% Similarity=0.366 Sum_probs=181.3
Q ss_pred CCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEec
Q 044773 10 LKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVYS 89 (289)
Q Consensus 10 ~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~s 89 (289)
+++++++++|||||||.+++.+++++|+++|+++++++|+||+|.++.+++....++.++.. ..+++++++|
T Consensus 163 ~~~~~v~i~~P~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~l~~~~~~~~~~~~~~~--------~~~~~i~~~S 234 (383)
T TIGR03540 163 KKAKLMFINYPNNPTGAVAPLKFFKELVEFAKEYNIIVCHDNAYSEITFDGYKAPSFLEVDG--------AKDVGIEFHS 234 (383)
T ss_pred ccceEEEEeCCCCCcCccCCHHHHHHHHHHHHHcCEEEEEecchhhhccCCCCCcCcccCCC--------cccCEEEEEe
Confidence 47899999999999999999999999999999999999999999988776655556555421 2367899999
Q ss_pred CccccCCCCceEEEEEecCHHHHHHHHhccc--cCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 044773 90 LSKDLGLPGFRVGAIYSNDDTVVAAATKMSS--FGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEKA 167 (289)
Q Consensus 90 ~sK~~g~~G~r~G~i~~~~~~~~~~~~~~~~--~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 167 (289)
|||.||++|+|+||+++++ .+.+.+..... ...++.+.|.++..++.+. .+++++.++.++++++.+.+.|++.
T Consensus 235 fSK~~g~~GlRiG~~i~~~-~l~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~---~~~~~~~~~~~~~~~~~~~~~L~~~ 310 (383)
T TIGR03540 235 LSKTYNMTGWRIGMAVGNA-DLIAGLGKVKTNVDSGVFQAIQYAAIAALNGP---QDVVKEIRKIYQRRRDLLLEALKKI 310 (383)
T ss_pred cccccCCccceeeEEeCCH-HHHHHHHHHHHhcccCCChHHHHHHHHHHhCC---HHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 9999999999999999964 44444444322 2335678899999999875 5678888999999999999999999
Q ss_pred CCceecCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEEecCCHHHHHHHHHHHHH
Q 044773 168 GISCLKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKLSMQRLKA 246 (289)
Q Consensus 168 g~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ris~~~~~~e~l~~~l~~l~~ 246 (289)
|+.+.++++|+|+|+++++..+. .+++..+++++||.+.||..|+..+++++||+++. +++++.+++++|++
T Consensus 311 ~~~~~~~~~~~~~~~~l~~~~~~------~~~~~~ll~~~gi~v~~g~~f~~~~~~~~Ris~~~-~~~~l~~~l~~l~~ 382 (383)
T TIGR03540 311 GIDVEKPKATFYVWVPVPEGYTS------AEFAARLLEETGVVVTPGVGFGEYGEGYIRISLTV-PDERLEEAVARIKK 382 (383)
T ss_pred CCEecCCCcceEEEEECCCCCCH------HHHHHHHHHHCCEEEecchhhCccCCCeEEEEecC-CHHHHHHHHHHHhh
Confidence 99999999999999999754322 56888888888999999999986567899999984 78999999998865
No 19
>TIGR03542 DAPAT_plant LL-diaminopimelate aminotransferase. This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). This clade includes characterized species in plants and Chlamydia. Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh).
Probab=100.00 E-value=6.8e-35 Score=266.70 Aligned_cols=221 Identities=22% Similarity=0.301 Sum_probs=179.0
Q ss_pred CCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEec
Q 044773 10 LKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVYS 89 (289)
Q Consensus 10 ~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~s 89 (289)
+++++|+++|||||||.+++.+++++|+++|++++++||+||+|.++.+++..+.++.++.+ ..+++++++|
T Consensus 172 ~~~~~i~l~nP~NPTG~~~s~~~~~~l~~~a~~~~~~iI~De~y~~~~~~~~~~~~~~~~~~--------~~~~vi~~~S 243 (402)
T TIGR03542 172 PKIDIIYLCSPNNPTGTVLTKEQLKELVDYANEHGSLILFDAAYSAFISDPSLPHSIFEIPG--------AKECAIEFRS 243 (402)
T ss_pred CCceEEEEeCCCCCCCccCCHHHHHHHHHHHHHcCeEEEEEchhhhhccCCCCCcchhhCCC--------CcccEEEEec
Confidence 46899999999999999999999999999999999999999999988665433344444411 2367899999
Q ss_pred CccccCCCCceEEEEEecCHHH-------HHHH-Hhc-cccCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHH
Q 044773 90 LSKDLGLPGFRVGAIYSNDDTV-------VAAA-TKM-SSFGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKL 160 (289)
Q Consensus 90 ~sK~~g~~G~r~G~i~~~~~~~-------~~~~-~~~-~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l 160 (289)
|||.+|+||+|+||++++++.+ .... ... .....++.+.|.++..++.+..+ .+.++.++.++++++.+
T Consensus 244 fSK~~g~pGlRiG~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~--~~~~~~~~~~~~~~~~~ 321 (402)
T TIGR03542 244 FSKTAGFTGVRLGWTVVPKELTYADGHSVIQDWERRQCTKFNGASYPVQRAAEAAYAGEGL--QPILEAISYYMENARIL 321 (402)
T ss_pred CccccCCCCcceEEEEecHHHhhcchhhHHHHHHHHhhhcccCCCHHHHHHHHHHHcCcch--hHHHHHHHHHHHHHHHH
Confidence 9999999999999999976544 1222 122 22334778999998888887543 34666778999999999
Q ss_pred HHHHHhcCCceecCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEEecCCHHHHHHH
Q 044773 161 VSGLEKAGISCLKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKLS 240 (289)
Q Consensus 161 ~~~l~~~g~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ris~~~~~~e~l~~~ 240 (289)
.+.|++.|+++.++.+|+|+|++++...+. .+++..+++++||.+.||+.|+..+.+++||+++. ++++++++
T Consensus 322 ~~~L~~~~~~~~~~~~~~f~~v~l~~~~~~------~~l~~~l~~~~gv~v~pg~~f~~~~~~~iRis~~~-~~~~l~~~ 394 (402)
T TIGR03542 322 RKALEAAGFKVYGGEHAPYLWVKTPEGISS------WDFFDFLLYQYHVVGTPGSGFGPSGEGFVRFSAFG-KRENIVEA 394 (402)
T ss_pred HHHHHhcCceecCCCceeEEEEECCCCCCH------HHHHHHHHHhCCEEEeCchhhCCCCCCEEEEEecC-CHHHHHHH
Confidence 999998888888888999999999864332 56888888888999999999987667899999875 89999999
Q ss_pred HHHHHHH
Q 044773 241 MQRLKAF 247 (289)
Q Consensus 241 l~~l~~~ 247 (289)
+++|+++
T Consensus 395 l~~l~~~ 401 (402)
T TIGR03542 395 CERIKEA 401 (402)
T ss_pred HHHHHhh
Confidence 9999875
No 20
>PRK06348 aspartate aminotransferase; Provisional
Probab=100.00 E-value=1.2e-34 Score=263.69 Aligned_cols=218 Identities=20% Similarity=0.400 Sum_probs=180.6
Q ss_pred CCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEec
Q 044773 10 LKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVYS 89 (289)
Q Consensus 10 ~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~s 89 (289)
+++++|++++||||||.++|.+++++|+++|++++++||+||+|.++.+++ ...++.++.. ..+++++++|
T Consensus 161 ~~~~~v~l~~p~NPtG~~~s~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~-~~~~~~~~~~--------~~~~vi~~~S 231 (384)
T PRK06348 161 SKTKAIILNSPNNPTGAVFSKETLEEIAKIAIEYDLFIISDEVYDGFSFYE-DFVPMATLAG--------MPERTITFGS 231 (384)
T ss_pred cCccEEEEeCCCCCCCcCCCHHHHHHHHHHHHHCCeEEEEecccccceeCC-CccchhhcCC--------CcCcEEEEec
Confidence 468999999999999999999999999999999999999999999987754 3334444421 2478999999
Q ss_pred CccccCCCCceEEEEEecCHHHHHHHHhccc--cCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 044773 90 LSKDLGLPGFRVGAIYSNDDTVVAAATKMSS--FGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEKA 167 (289)
Q Consensus 90 ~sK~~g~~G~r~G~i~~~~~~~~~~~~~~~~--~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 167 (289)
|||++|++|+|+||+++++ .+.+.+..... ...++++.|.++..++... +.++++.++.++++++.+.+.|++.
T Consensus 232 fSK~~~l~GlRiG~~v~~~-~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~---~~~~~~~~~~~~~r~~~~~~~L~~~ 307 (384)
T PRK06348 232 FSKDFAMTGWRIGYVIAPD-YIIETAKIINEGICFSAPTISQRAAIYALKHR---DTIVPLIKEEFQKRLEYAYKRIESI 307 (384)
T ss_pred chhccCCccccceeeecCH-HHHHHHHHHHHhccCCCCHHHHHHHHHHHhCc---HHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 9999999999999999964 45555444332 2347889999999999753 6678889999999999999999887
Q ss_pred -CCceecCCceEEEEEecCc-cccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEEecCCHHHHHHHHHHHH
Q 044773 168 -GISCLKSNAGLFCWVDMRH-LLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKLSMQRLK 245 (289)
Q Consensus 168 -g~~~~~~~~g~~~~i~~~~-~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ris~~~~~~e~l~~~l~~l~ 245 (289)
++++.+|++|+|+|++++. ..+ ..+++..+++++||.+.||..|+..+++++||+++ .+++++++++++|+
T Consensus 308 ~~~~~~~p~gg~~~~~~~~~~~~~------~~~l~~~l~~~~gv~v~pg~~f~~~~~~~iRi~~~-~~~~~l~~al~~l~ 380 (384)
T PRK06348 308 PNLSLHPPKGSIYAFINIKKTGLS------SVEFCEKLLKEAHVLVIPGKAFGESGEGYIRLACT-VGIEVLEEAFNRIE 380 (384)
T ss_pred CCceeccCCeeEEEEEecccCCCC------HHHHHHHHHHhCCEEEcCchhhccCCCCeEEEEec-CCHHHHHHHHHHHH
Confidence 7788899999999999874 222 25688888888899999999998766789999998 48999999999997
Q ss_pred HH
Q 044773 246 AF 247 (289)
Q Consensus 246 ~~ 247 (289)
++
T Consensus 381 ~~ 382 (384)
T PRK06348 381 KM 382 (384)
T ss_pred hh
Confidence 64
No 21
>PRK05957 aspartate aminotransferase; Provisional
Probab=100.00 E-value=1.7e-34 Score=263.03 Aligned_cols=224 Identities=21% Similarity=0.339 Sum_probs=182.4
Q ss_pred CCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEec
Q 044773 10 LKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVYS 89 (289)
Q Consensus 10 ~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~s 89 (289)
+++|+|+++|||||||.+++.+++++|+++|+++|+++|+||+|.++.+++....+..... +...++++++|
T Consensus 159 ~~~klv~~~~p~NPtG~~~~~~~~~~i~~~a~~~~~~li~De~y~~~~~~~~~~~~~~~~~--------~~~~~~i~~~S 230 (389)
T PRK05957 159 PKTRAIVTISPNNPTGVVYPEALLRAVNQICAEHGIYHISDEAYEYFTYDGVKHFSPGSIP--------GSGNHTISLYS 230 (389)
T ss_pred cCceEEEEeCCCCCCCcCcCHHHHHHHHHHHHHcCcEEEEeccchhccCCCCCccChhhCC--------CccCcEEEEec
Confidence 4789999999999999999999999999999999999999999998877543333433332 24578999999
Q ss_pred CccccCCCCceEEEEEecCHHHHHHHHhcccc--CCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 044773 90 LSKDLGLPGFRVGAIYSNDDTVVAAATKMSSF--GLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEKA 167 (289)
Q Consensus 90 ~sK~~g~~G~r~G~i~~~~~~~~~~~~~~~~~--~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 167 (289)
|||.+|++|+|+||+++++ .+.+.+...... .+.+.+.|.++..+++++ ..++++.++.++++++.+.+.|++.
T Consensus 231 ~SK~~g~~GlRiG~~~~~~-~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~---~~~~~~~~~~~~~~r~~l~~~L~~~ 306 (389)
T PRK05957 231 LSKAYGFASWRIGYMVIPI-HLLEAIKKIQDTILICPPVVSQYAALGALQVG---KSYCQQHLPEIAQVRQILLKSLGQL 306 (389)
T ss_pred chhhccCccceeEEEecCH-HHHHHHHHHHhhcccCCCcHHHHHHHHHHhCC---hHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999965 455544443322 335668999999999875 3346666777899999999999887
Q ss_pred -C-CceecCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEEecCCHHHHHHHHHHHH
Q 044773 168 -G-ISCLKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKLSMQRLK 245 (289)
Q Consensus 168 -g-~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ris~~~~~~e~l~~~l~~l~ 245 (289)
+ +.+.++++|+|+|++++...+ +.+++..+++++||.+.||..|+...++++||+++..+++++++++++|.
T Consensus 307 ~~~~~~~~~~gg~~~~~~~~~~~~------~~~~~~~l~~~~gv~v~pg~~f~~~~~~~iRis~~~~~~~~l~~~~~~l~ 380 (389)
T PRK05957 307 QDRCTLHPANGAFYCFLKVNTDLN------DFELVKQLIREYRVAVIPGTTFGMKNGCYLRIAYGALQKATAKEGIERLV 380 (389)
T ss_pred CCCccccCCCeeEEEEEeCCCCCC------hHHHHHHHHHHCCEEEccchhhCCCCCCEEEEEEecCCHHHHHHHHHHHH
Confidence 5 377789999999999875433 25788888888899999999998766779999998678999999999999
Q ss_pred HHHHHH
Q 044773 246 AFVDSI 251 (289)
Q Consensus 246 ~~l~~~ 251 (289)
+.+++.
T Consensus 381 ~~~~~~ 386 (389)
T PRK05957 381 QGLKTI 386 (389)
T ss_pred HHHHhh
Confidence 988764
No 22
>PTZ00377 alanine aminotransferase; Provisional
Probab=100.00 E-value=2.4e-34 Score=268.50 Aligned_cols=237 Identities=19% Similarity=0.296 Sum_probs=183.0
Q ss_pred CccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCC-CCccChhhhhhccccccCCC----CCceE
Q 044773 11 KVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSS-PGFVSIMEILKDRNCENTEV----WNRVH 85 (289)
Q Consensus 11 ~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~-~~~~~~~~~~~~~~~~~~d~----~~~~i 85 (289)
++|+++++|||||||.+++.+++++|+++|++++++||+||+|..+.|++ ..+.++..+..++ +. ..+++
T Consensus 218 ~~k~l~l~~P~NPTG~~~s~e~~~~i~~~a~~~~~~iI~De~Y~~l~~~~~~~~~s~~~~~~~l-----~~~~~~~~~vi 292 (481)
T PTZ00377 218 TPRALVVINPGNPTGQVLTRDVMEEIIKFCYEKGIVLMADEVYQENIYDGEKPFISFRKVLLEL-----PAEYNTDVELV 292 (481)
T ss_pred CeeEEEEECCCCCCCcCCCHHHHHHHHHHHHHCCCEEEEehhhHhhccCCCCCcccHHHHHHhh-----cccccCCeEEE
Confidence 68999999999999999999999999999999999999999999987743 3455665543321 11 13689
Q ss_pred EEecCccc-cCCCCceEEEEEe--cCHHHHHHHHhcc-ccCCCChHHHHHHHHHhCCc-----hH--HHHHHHHHHHHHH
Q 044773 86 IVYSLSKD-LGLPGFRVGAIYS--NDDTVVAAATKMS-SFGLVSSQTQYLLSALLSDK-----KF--AQNYISENKKRLK 154 (289)
Q Consensus 86 ~i~s~sK~-~g~~G~r~G~i~~--~~~~~~~~~~~~~-~~~~~~~~~q~~~~~~l~~~-----~~--~~~~~~~~~~~~~ 154 (289)
+++||||. ++++|+|+||+++ .++.+.+.+.... ...++|++.|.++..++... .+ ..+++++.++.++
T Consensus 293 ~~~S~SK~~~~~~GlRiG~~~~~~~p~~li~~l~~~~~~~~~~~~~~Q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 372 (481)
T PTZ00377 293 SFHSTSKGIIGECGRRGGYFELTNIPPEVREQIYKLASINLCSNVVGQLMTGLMCNPPREGDASYPLYKRERDAIFTSLK 372 (481)
T ss_pred EEecCCcccccCCcCceEEEEEeCCCHHHHHHHHHHhheecCCChHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHHHHH
Confidence 99999998 5889999999997 2455555444433 33357889999999999642 11 1444556666789
Q ss_pred HHHHHHHHHHHhc-CCceecCCceEEEEEecCcccc--C----CChhhHHHHHHHHHHhcCeEEeCCCCCCCC-CCCeEE
Q 044773 155 QRHRKLVSGLEKA-GISCLKSNAGLFCWVDMRHLLS--S----NTFEAEMELWKKIVYDVKLNISPGSSCHCT-EPGWFR 226 (289)
Q Consensus 155 ~~~~~l~~~l~~~-g~~~~~~~~g~~~~i~~~~~~~--~----~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~-~~~~~R 226 (289)
++++.+.+.|+++ |+++..|+||||+|+++..+.. . ....+...++..+++++||.+.||+.|+.. +.+++|
T Consensus 373 ~rr~~l~~~L~~~~g~~~~~p~gg~fl~~~~~l~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pG~~F~~~~~~~~~R 452 (481)
T PTZ00377 373 RRAELLTDELNKIEGVSCQPVEGAMYAFPRIELPEKAIQEAKERGLAPDVLYCLELLESTGIVVVPGSGFGQKPGTYHFR 452 (481)
T ss_pred HHHHHHHHHHhcCCCcEeecCCeeEEEEeeccCchhhHHHHHhcCCCcHHHHHHHHHHHcCEEEeCCcccCCCCCCCEEE
Confidence 9999999999988 8999999999999987642110 0 001112346778888999999999999853 457999
Q ss_pred EEEecCCHHHHHHHHHHHHHHHHHHHH
Q 044773 227 VCFANMSEDTLKLSMQRLKAFVDSITT 253 (289)
Q Consensus 227 is~~~~~~e~l~~~l~~l~~~l~~~~~ 253 (289)
|+++ .+++++++++++|++++++..+
T Consensus 453 ls~~-~~~e~l~~~l~rl~~~~~~~~~ 478 (481)
T PTZ00377 453 ITIL-PPEEQIEEMVKKIKEFHESFMK 478 (481)
T ss_pred EEEC-CCHHHHHHHHHHHHHHHHHHHH
Confidence 9999 6889999999999999988765
No 23
>PRK12414 putative aminotransferase; Provisional
Probab=100.00 E-value=1e-34 Score=263.99 Aligned_cols=219 Identities=21% Similarity=0.315 Sum_probs=177.2
Q ss_pred CCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEec
Q 044773 10 LKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVYS 89 (289)
Q Consensus 10 ~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~s 89 (289)
+++++|+++|||||||.+++.+++++|+++|+++++++|+||+|.++.|++....++..+. +..+++++++|
T Consensus 161 ~~~~~v~i~~p~NPTG~~~s~~~~~~i~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~--------~~~~~~i~~~S 232 (384)
T PRK12414 161 PRTRMIIVNTPHNPSATVFSAADLARLAQLTRNTDIVILSDEVYEHVVFDGARHHSMARHR--------ELAERSVIVSS 232 (384)
T ss_pred cccEEEEEcCCCCCCCcCCCHHHHHHHHHHHHHCCeEEEEhhhhhhccCCCCCccCcccCc--------CccCcEEEEec
Confidence 4789999999999999999999999999999999999999999999877664444444431 13468999999
Q ss_pred CccccCCCCceEEEEEecCHHHHHHHHhcc--ccCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 044773 90 LSKDLGLPGFRVGAIYSNDDTVVAAATKMS--SFGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEKA 167 (289)
Q Consensus 90 ~sK~~g~~G~r~G~i~~~~~~~~~~~~~~~--~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 167 (289)
|||.+|++|+|+||++++++. .+.+.... ....++.+.|.++..++.++.. ..+.++.++++++.+.+.|++.
T Consensus 233 fSK~~~~pGlRiG~~v~~~~l-~~~l~~~~~~~~~~~s~~~q~a~~~~l~~~~~----~~~~~~~~~~~r~~l~~~L~~~ 307 (384)
T PRK12414 233 FGKSYHVTGWRVGYCLAPAEL-MDEIRKVHQFMVFSADTPMQHAFAEALAEPAS----YLGLGAFYQRKRDLLARELAGS 307 (384)
T ss_pred ccccccCccceEEEEecCHHH-HHHHHHHHhheecCCCcHHHHHHHHHhcCChH----HHHHHHHHHHHHHHHHHHHHhC
Confidence 999999999999999997554 44444433 2344788999999999987643 2356788999999999999999
Q ss_pred CCceecCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCCC--CCeEEEEEecCCHHHHHHHHHHHH
Q 044773 168 GISCLKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTE--PGWFRVCFANMSEDTLKLSMQRLK 245 (289)
Q Consensus 168 g~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~--~~~~Ris~~~~~~e~l~~~l~~l~ 245 (289)
|+.+.+++||||+|++++..... ...+++..+++++||.+.||..|+..+ .+++||+++. +++++++++++|.
T Consensus 308 g~~~~~~~gg~~~~~~~~~~~~~----~~~~~~~~~l~~~gV~v~pg~~f~~~~~~~~~iRis~~~-~~~~~~~~~~rl~ 382 (384)
T PRK12414 308 RFELLPSEGSFFMLARFRHFSDE----SDSDFVLRLIRDARVATIPLSAFYTDGTDTGLIRLSFSK-DDATLVEGARRLC 382 (384)
T ss_pred CCeecCCCcceEEEEcccccCCC----CHHHHHHHHHHhCCEEEecchhhcCCCCCCCEEEEEecC-CHHHHHHHHHHHh
Confidence 98889999999999988752111 123577677778999999999997433 5799999996 8999999999997
Q ss_pred H
Q 044773 246 A 246 (289)
Q Consensus 246 ~ 246 (289)
+
T Consensus 383 ~ 383 (384)
T PRK12414 383 S 383 (384)
T ss_pred h
Confidence 4
No 24
>PRK08175 aminotransferase; Validated
Probab=100.00 E-value=1.8e-34 Score=263.31 Aligned_cols=236 Identities=21% Similarity=0.302 Sum_probs=190.9
Q ss_pred hHHHhhhC-CCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCC
Q 044773 2 YQLAQKRH-LKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEV 80 (289)
Q Consensus 2 l~~~~~~~-~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 80 (289)
++++++.. ++++++++++||||||.+++.+++++|+++|+++|+++|+||+|.++.+++....++.++.. .
T Consensus 154 l~~~l~~~~~~~~~v~i~~p~NPtG~~~~~~~~~~i~~~a~~~~i~ii~De~y~~l~~~~~~~~~~~~~~~--------~ 225 (395)
T PRK08175 154 LERAIRESYPKPKMMILGFPSNPTAQCVELEFFEKVVALAKRYDVLVVHDLAYADIVYDGWKAPSIMQVPG--------A 225 (395)
T ss_pred HHHHHhhccCCceEEEEeCCCCCCCCCCCHHHHHHHHHHHHHcCcEEEEecchHhhccCCCCCcchhcCCC--------c
Confidence 34555432 57899999999999999999999999999999999999999999988776555555554421 2
Q ss_pred CCceEEEecCccccCCCCceEEEEEecCHHHHHHHHhccc--cCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHH
Q 044773 81 WNRVHIVYSLSKDLGLPGFRVGAIYSNDDTVVAAATKMSS--FGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHR 158 (289)
Q Consensus 81 ~~~~i~i~s~sK~~g~~G~r~G~i~~~~~~~~~~~~~~~~--~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 158 (289)
.+++++++||||.||+||+|+||+++++ .+.+.+.+... ..+.+++.|.++..++... +.++++.++.++++++
T Consensus 226 ~~~~i~~~S~SK~~g~pGlRiG~~~~~~-~l~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~---~~~~~~~~~~~~~~~~ 301 (395)
T PRK08175 226 KDVAVEFFTLSKSYNMAGWRIGFMVGNP-ELVSALARIKSYHDYGTFTPLQVAAIAALEGD---QQCVRDIAEQYKRRRD 301 (395)
T ss_pred ccCEEEEeeccccccCcchhheeeeCCH-HHHHHHHHHHhhcccCCCcHHHHHHHHHHhCc---HHHHHHHHHHHHHHHH
Confidence 4678899999999999999999999954 55555544432 2335677888888888653 6678899999999999
Q ss_pred HHHHHHHhcCCceecCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEEecCCHHHHH
Q 044773 159 KLVSGLEKAGISCLKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLK 238 (289)
Q Consensus 159 ~l~~~l~~~g~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ris~~~~~~e~l~ 238 (289)
.+.+.|++.|+.+..|++|+|+|++++..... .+..+++..+++++||.+.||..|+..+++++||+++ .+++.+.
T Consensus 302 ~~~~~L~~~~~~~~~p~~g~~i~i~l~~~~~~---~~~~~~~~~l~~~~gv~v~p~~~f~~~~~~~lRis~~-~~~~~~~ 377 (395)
T PRK08175 302 VLVKGLHEAGWMVEMPKASMYVWAKIPEPYAA---MGSLEFAKKLLNEAKVCVSPGIGFGDYGDTHVRFALI-ENRDRIR 377 (395)
T ss_pred HHHHHHHHcCCcccCCCEEEEEEEECCcccCC---CCHHHHHHHHHHhCCEEEeCchhhCcCCCCeEEEEeC-CCHHHHH
Confidence 99999999998888899999999999865421 1235688888888999999999998766789999998 4899999
Q ss_pred HHHHHHHHHHHHHHH
Q 044773 239 LSMQRLKAFVDSITT 253 (289)
Q Consensus 239 ~~l~~l~~~l~~~~~ 253 (289)
+++++|.+++++..+
T Consensus 378 ~al~~l~~~l~~~~~ 392 (395)
T PRK08175 378 QAIRGIKAMFRADGL 392 (395)
T ss_pred HHHHHHHHHHHhcCC
Confidence 999999999976543
No 25
>PRK09276 LL-diaminopimelate aminotransferase; Provisional
Probab=100.00 E-value=1.6e-34 Score=262.93 Aligned_cols=218 Identities=23% Similarity=0.336 Sum_probs=180.4
Q ss_pred CCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEec
Q 044773 10 LKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVYS 89 (289)
Q Consensus 10 ~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~s 89 (289)
+++++|+++|||||||.+++.+++++|+++|++++++||+||+|.++.+++....++.++.+ ..+++++++|
T Consensus 165 ~~~~~v~l~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~--------~~~~~i~~~S 236 (385)
T PRK09276 165 KKAKLMFINYPNNPTGAVADLEFFEEVVDFAKKYDIIVCHDAAYSEIAYDGYKPPSFLEVPG--------AKDVGIEFHS 236 (385)
T ss_pred ccceEEEEeCCCCCCCCCCCHHHHHHHHHHHHHCCcEEEEecchhheecCCCCCCChhccCC--------CcCCEEEEec
Confidence 46899999999999999999999999999999999999999999988776655556555421 2467899999
Q ss_pred CccccCCCCceEEEEEecCHHHHHHHHhccc--cCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 044773 90 LSKDLGLPGFRVGAIYSNDDTVVAAATKMSS--FGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEKA 167 (289)
Q Consensus 90 ~sK~~g~~G~r~G~i~~~~~~~~~~~~~~~~--~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 167 (289)
|||.+|++|+|+||++++++ +.+.+..... ..+.+.+.|.++..++... ..++++.++.++++++.+.+.|++.
T Consensus 237 ~SK~~g~~GlRiG~~i~~~~-l~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~---~~~~~~~~~~~~~~~~~l~~~L~~~ 312 (385)
T PRK09276 237 LSKTYNMTGWRIGFAVGNAD-LIAGLGKVKSNVDSGVFQAIQEAGIAALNGP---QEVVEELRKIYQERRDILVEGLRKL 312 (385)
T ss_pred chhhcCCcchhheeeeCCHH-HHHHHHHHHhhccCCCCHHHHHHHHHHHcCc---HHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 99999999999999999654 4444443322 2235668888888888753 6678889999999999999999998
Q ss_pred CCceecCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEEecCCHHHHHHHHHHHHH
Q 044773 168 GISCLKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKLSMQRLKA 246 (289)
Q Consensus 168 g~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ris~~~~~~e~l~~~l~~l~~ 246 (289)
|+++.+|++|+|+|++++...+ ..+++..+++++||.+.||..|+..+++++||+++. +++++.+++++|++
T Consensus 313 ~~~~~~~~~~~~~~v~~~~~~~------~~~l~~~ll~~~gi~v~~g~~f~~~~~~~~Ris~~~-~~~~l~~~l~~l~~ 384 (385)
T PRK09276 313 GLEVEPPKATFYVWAPVPKGYT------SAEFATLLLDKAGVVVTPGNGFGEYGEGYFRIALTV-PDERIEEAVERIKK 384 (385)
T ss_pred CCcccCCCcceEEEEECCCCCC------HHHHHHHHHHhCCEEECCchhhCCCCCCeEEEEeCC-CHHHHHHHHHHHhh
Confidence 9888889999999999986432 256888888888999999999986667899999984 88999999998864
No 26
>COG1167 ARO8 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism]
Probab=100.00 E-value=2.6e-34 Score=265.66 Aligned_cols=232 Identities=22% Similarity=0.348 Sum_probs=196.1
Q ss_pred hHHHhhhCCCccEEEEeCC-CCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCC
Q 044773 2 YQLAQKRHLKVKGVLVTNP-SNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEV 80 (289)
Q Consensus 2 l~~~~~~~~~~~~i~l~~p-~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 80 (289)
++++++.+ ++|+++++.- |||||.+||.+++++|+++|++|+++||+||+|+.+.+++.+.+++..+ |.
T Consensus 218 le~~~~~~-~~k~~y~~P~~qNPtG~tms~~rR~~Ll~lA~~~~~~IIEDD~y~el~~~~~p~~~l~~l---------d~ 287 (459)
T COG1167 218 LEEALAQW-KPKAVYVTPTFQNPTGVTMSLERRKALLALAEKYDVLIIEDDYYGELRYDGPPPPPLKAL---------DA 287 (459)
T ss_pred HHHHHhhc-CCcEEEECCCCCCCCCCccCHHHHHHHHHHHHHcCCeEEeeCcchhhhcCCCCCCChHhh---------CC
Confidence 56666666 7999655533 8999999999999999999999999999999999998887777777777 56
Q ss_pred CCceEEEecCccccCCCCceEEEEEecCHHHHHHHHhc-cccCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHH
Q 044773 81 WNRVHIVYSLSKDLGLPGFRVGAIYSNDDTVVAAATKM-SSFGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRK 159 (289)
Q Consensus 81 ~~~~i~i~s~sK~~g~~G~r~G~i~~~~~~~~~~~~~~-~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 159 (289)
.++|++++||||++. ||+|+||+++|++.+....... .....++.+.|.+++.++.++.+ +++++++++.|+++++.
T Consensus 288 ~~rViy~gSFSK~l~-PglRlG~vv~p~~~~~~~~~~k~~~~~~~s~~~Q~~la~~l~~G~~-~~hl~~lR~~y~~rr~~ 365 (459)
T COG1167 288 PGRVIYLGSFSKTLA-PGLRLGYVVAPPELIEKLLRLKQAADLGPSSLSQAALAAFLLSGHY-DRHLRRLRREYARRRDA 365 (459)
T ss_pred CCCEEEEeeehhhcc-cccceeeeeCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHcCCH-HHHHHHHHHHHHHHHHH
Confidence 799999999999997 9999999999765554443322 22334788999999999998777 99999999999999999
Q ss_pred HHHHHHhc---CCceecCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeC-CCCCCCCC--CCeEEEEEecCC
Q 044773 160 LVSGLEKA---GISCLKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISP-GSSCHCTE--PGWFRVCFANMS 233 (289)
Q Consensus 160 l~~~l~~~---g~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~p-g~~f~~~~--~~~~Ris~~~~~ 233 (289)
+.+.|.++ +..+..|.+|+|+|+++++..+. .++...++ ++|+.+.| |..|...+ .+++|++++..+
T Consensus 366 l~~~L~~~~~~~~~~~~p~gG~flwl~l~~~~~~------~~l~~~a~-~~gv~i~~~g~~f~~~~~~~~~~Rl~~s~~~ 438 (459)
T COG1167 366 LLEALAEYLPELATWTRPEGGLFLWLELPEGIDA------RELLAAAL-EKGVVVTPLGSAFSADGDPRNGLRLSFSSPS 438 (459)
T ss_pred HHHHHHHhCCCCeeeecCCceEEEEEEcCCCCCH------HHHHHHHH-HCCCEEEcCCccccCCCCCCCeEEEEcCCCC
Confidence 99999998 46788999999999999987654 45676666 66999998 88887644 568999998889
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 044773 234 EDTLKLSMQRLKAFVDSIT 252 (289)
Q Consensus 234 ~e~l~~~l~~l~~~l~~~~ 252 (289)
++++++++++|.+++.+..
T Consensus 439 ~e~i~~gi~~l~~~~~~~~ 457 (459)
T COG1167 439 EEEIEEGIKRLAALLREAA 457 (459)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 9999999999999988754
No 27
>PRK09082 methionine aminotransferase; Validated
Probab=100.00 E-value=8.7e-35 Score=264.68 Aligned_cols=220 Identities=22% Similarity=0.334 Sum_probs=181.9
Q ss_pred CCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEec
Q 044773 10 LKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVYS 89 (289)
Q Consensus 10 ~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~s 89 (289)
++++++++++||||||.+++.+++++|+++|+++++++|+||+|.++.+++....++.++.. ..+++++++|
T Consensus 162 ~~~~~v~l~~p~NPtG~~~~~~~~~~i~~~a~~~~i~li~De~y~~~~~~~~~~~s~~~~~~--------~~~~~i~~~S 233 (386)
T PRK09082 162 PRTRLIILNTPHNPSGTVWSAADMRALWQLIAGTDIYVLSDEVYEHIVFDGAGHASVLRHPE--------LRERAFVVSS 233 (386)
T ss_pred ccceEEEEeCCCCCCCcCCCHHHHHHHHHHHHHCCEEEEEehhhhhhccCCCCCCChhhCcC--------ccCcEEEEee
Confidence 46899999999999999999999999999999999999999999988776555556655522 3578999999
Q ss_pred CccccCCCCceEEEEEecCHHHHHHHHhcc--ccCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 044773 90 LSKDLGLPGFRVGAIYSNDDTVVAAATKMS--SFGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEKA 167 (289)
Q Consensus 90 ~sK~~g~~G~r~G~i~~~~~~~~~~~~~~~--~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 167 (289)
|||.+|++|+|+||+++++ .+.+.+.... ..+.++.+.|.+++.++... +++.++.++.++++++.+.+.|++.
T Consensus 234 ~SK~~~~~G~RiG~iv~~~-~l~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~---~~~~~~~~~~~~~~~~~~~~~L~~~ 309 (386)
T PRK09082 234 FGKTYHVTGWKVGYCVAPA-ALSAEFRKVHQYNTFTVNTPAQLALADYLRAE---PEHYLELPAFYQAKRDRFRAALANS 309 (386)
T ss_pred chhhccchhhhhhhhhCCH-HHHHHHHHHHhhhcCCCChHHHHHHHHHHhCC---hHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 9999999999999999965 4444444332 22347889999999999742 5667888999999999999999998
Q ss_pred CCceecCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCC--CCCCeEEEEEecCCHHHHHHHHHHHH
Q 044773 168 GISCLKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHC--TEPGWFRVCFANMSEDTLKLSMQRLK 245 (289)
Q Consensus 168 g~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~--~~~~~~Ris~~~~~~e~l~~~l~~l~ 245 (289)
++++.++++|+|+|+++++.. . .+..+++..+++++||.+.||+.|+. .+.+++||+++. +++++++++++|+
T Consensus 310 ~~~~~~~~g~~~~~~~~~~~~-~---~~~~~~~~~l~~~~~v~v~pg~~f~~~~~~~~~~Ri~~~~-~~~~l~~~~~rl~ 384 (386)
T PRK09082 310 RFKLLPCEGTYFQLVDYSAIS-D---LDDVEFCQWLTREHGVAAIPLSVFYADPFPHRLVRLCFAK-QEETLDAAAERLC 384 (386)
T ss_pred CCcccCCCeeEEEEEeccccC-C---CCHHHHHHHHHHhCCEEEeCcHHhCCCCCCCCEEEEEecC-CHHHHHHHHHHHh
Confidence 999999999999999987521 1 12356888888899999999998863 346799999996 8999999999987
Q ss_pred H
Q 044773 246 A 246 (289)
Q Consensus 246 ~ 246 (289)
+
T Consensus 385 ~ 385 (386)
T PRK09082 385 Q 385 (386)
T ss_pred h
Confidence 5
No 28
>PRK05942 aspartate aminotransferase; Provisional
Probab=100.00 E-value=2.7e-34 Score=262.13 Aligned_cols=219 Identities=22% Similarity=0.314 Sum_probs=180.1
Q ss_pred CCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEec
Q 044773 10 LKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVYS 89 (289)
Q Consensus 10 ~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~s 89 (289)
+++|+|+++|||||||.+++.+++++|+++|++++++||+||+|..+.+++....++.++.+ ..+.+++++|
T Consensus 169 ~~~k~i~l~~P~NPtG~~~s~~~~~~i~~~a~~~~~~iI~De~y~~~~~~~~~~~~~~~~~~--------~~~~~i~~~S 240 (394)
T PRK05942 169 QQAKILYFNYPSNPTTATAPREFFEEIVAFARKYEIMLVHDLCYAELAFDGYQPTSLLEIPG--------AKDIGVEFHT 240 (394)
T ss_pred ccceEEEEcCCCCCCCCcCCHHHHHHHHHHHHHcCeEEEEeccchhhccCCCCCCChhhCCC--------ccccEEEEec
Confidence 57999999999999999999999999999999999999999999988776555455554421 2356788999
Q ss_pred CccccCCCCceEEEEEecCHHHHHHHHhccc--cCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 044773 90 LSKDLGLPGFRVGAIYSNDDTVVAAATKMSS--FGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEKA 167 (289)
Q Consensus 90 ~sK~~g~~G~r~G~i~~~~~~~~~~~~~~~~--~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 167 (289)
|||.||++|+|+||+++++ .+.+.+..... ....+++.|.++..+++.. +.++++.++.++++++.+.+.|++.
T Consensus 241 fSK~~~~~GlRiG~i~~~~-~l~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~---~~~~~~~~~~~~~~~~~~~~~L~~~ 316 (394)
T PRK05942 241 LSKTYNMAGWRVGFVVGNR-HIIQGLRTLKTNLDYGIFSALQKAAETALQLP---DSYLQQVQERYRTRRDFLIQGLGEL 316 (394)
T ss_pred chhccCChhhheeeeecCH-HHHHHHHHHHhhcccCCCHHHHHHHHHHHhCc---HHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 9999999999999999954 55555544332 2336778999999999743 5678889999999999999999988
Q ss_pred CCceecCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEEecCCHHHHHHHHHHHHHH
Q 044773 168 GISCLKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKLSMQRLKAF 247 (289)
Q Consensus 168 g~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ris~~~~~~e~l~~~l~~l~~~ 247 (289)
|+.+.++++|+|+|++++...+. .+++..+++++||.+.||..|+..+++++||+++. +.+.+.++++++.++
T Consensus 317 ~~~~~~~~~~~f~~~~~~~~~~~------~~~~~~~l~~~gV~v~~g~~f~~~~~~~iRis~~~-~~~~l~~~l~~l~~~ 389 (394)
T PRK05942 317 GWNIPPTKATMYLWVPCPVGMGS------TDFALNVLQKTGVVVTPGNAFGEGGEGYVRISLIA-DCDRLGEALDRLKQA 389 (394)
T ss_pred CCeecCCCeeeEEEEECCCCCCH------HHHHHHHHHHCCEEEeCChhhCcCCCCeEEEEecC-CHHHHHHHHHHHHHh
Confidence 88888899999999999854332 45777778889999999999986667899999984 788899998888653
No 29
>PLN00145 tyrosine/nicotianamine aminotransferase; Provisional
Probab=100.00 E-value=6e-34 Score=262.10 Aligned_cols=229 Identities=21% Similarity=0.351 Sum_probs=185.2
Q ss_pred CCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEec
Q 044773 10 LKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVYS 89 (289)
Q Consensus 10 ~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~s 89 (289)
+++++++++|||||||.+++.+++++|+++|++++++||+||+|.++.|++..+.++..+ +..+++++++|
T Consensus 189 ~~~~~i~i~~P~NPtG~v~~~~~l~~i~~~a~~~~i~ii~De~Y~~~~~~~~~~~~~~~~---------~~~~~vi~~~S 259 (430)
T PLN00145 189 ENTVAMVIINPNNPCGSVYSYEHLAKIAETARKLGILVIADEVYDHLTFGSKPFVPMGVF---------GEVAPVLTLGS 259 (430)
T ss_pred cCceEEEEeCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEeccchhhccCCCCccchhhh---------cccCcEEEEec
Confidence 468999999999999999999999999999999999999999999987766555565554 23468999999
Q ss_pred CccccCCCCceEEEEEec-CHHHH------HHHHhccccC-CCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHH
Q 044773 90 LSKDLGLPGFRVGAIYSN-DDTVV------AAATKMSSFG-LVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLV 161 (289)
Q Consensus 90 ~sK~~g~~G~r~G~i~~~-~~~~~------~~~~~~~~~~-~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~ 161 (289)
|||.|++||+|+||++++ ++.+. +.+....... .++.+.|.++..++.... ++++++.++.++++++.+.
T Consensus 260 ~SK~~~~pG~RlG~iv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Q~a~~~~l~~~~--~~~~~~~~~~~~~~~~~~~ 337 (430)
T PLN00145 260 ISKRWVVPGWRLGWIATCDPNGILKETKVVDSIRNYLNISTDPATFVQGAIPQIIANTK--EEFFTKTLGLLKETADICY 337 (430)
T ss_pred cccccCCCCeeEEEEEEecchhhhhhhHHHHHHHHHhcccCCCCHHHHHHHHHHHhcCH--HHHHHHHHHHHHHHHHHHH
Confidence 999999999999999984 23222 2233333322 356799999999998632 6778999999999999999
Q ss_pred HHHHhc-CCce-ecCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEEecCCHHHHHH
Q 044773 162 SGLEKA-GISC-LKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKL 239 (289)
Q Consensus 162 ~~l~~~-g~~~-~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ris~~~~~~e~l~~ 239 (289)
+.|+++ |+.+ ..|++++|+|++++...-. ...+..+++..+++++||.+.||..|+. ++|+||+++. +++++++
T Consensus 338 ~~L~~~~g~~~~~~P~ga~y~~v~l~~~~~~-~~~~~~~~~~~ll~~~gV~v~pG~~fg~--~~~lRis~~~-~~~~l~~ 413 (430)
T PLN00145 338 EKIKEIKCITCPHKPEGSMFVMVKLDLSCLS-GIKDDMDFCCKLAKEESVVVLPGSALGM--KNWLRITFAI-DPPSLED 413 (430)
T ss_pred HHHhcCCCCCCCcCCCeeeEEEeccChhhcC-CCCCHHHHHHHHHHhCCEEEeCccccCC--CCeEEEEeCC-CHHHHHH
Confidence 999987 7775 4799999999998742100 0112356888899999999999999985 6899999994 8999999
Q ss_pred HHHHHHHHHHHHHH
Q 044773 240 SMQRLKAFVDSITT 253 (289)
Q Consensus 240 ~l~~l~~~l~~~~~ 253 (289)
++++|+++++...+
T Consensus 414 al~rl~~~~~~~~~ 427 (430)
T PLN00145 414 GLERLKSFCLRHAK 427 (430)
T ss_pred HHHHHHHHHHHhcc
Confidence 99999999988765
No 30
>PLN02187 rooty/superroot1
Probab=100.00 E-value=5.2e-34 Score=264.37 Aligned_cols=229 Identities=22% Similarity=0.353 Sum_probs=182.0
Q ss_pred CCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEec
Q 044773 10 LKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVYS 89 (289)
Q Consensus 10 ~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~s 89 (289)
+++++++++|||||||.+++.+++++|+++|++++++||+||+|.++.|++..+.++.++. ...++++++|
T Consensus 203 ~~~~~v~i~nP~NPTG~v~s~e~l~~i~~~a~~~~i~iI~DE~Y~~l~f~~~~~~s~~~~~---------~~~~vi~l~S 273 (462)
T PLN02187 203 ENTVAMVVINPNNPCGNVYSHDHLKKVAETARKLGIMVISDEVYDRTIFGDNPFVSMGKFA---------SIVPVLTLAG 273 (462)
T ss_pred CCcEEEEEeCCCCCCCCccCHHHHHHHHHHHHHCCCEEEEeccccccccCCCCceeHHHhc---------cCCcEEEEec
Confidence 4688999999999999999999999999999999999999999999888665555665552 2256999999
Q ss_pred CccccCCCCceEEEEEecC-HHH---HHHHHhccc---cC-CCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHH
Q 044773 90 LSKDLGLPGFRVGAIYSND-DTV---VAAATKMSS---FG-LVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLV 161 (289)
Q Consensus 90 ~sK~~g~~G~r~G~i~~~~-~~~---~~~~~~~~~---~~-~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~ 161 (289)
|||.|+++|+|+||+++++ +.+ .+.+..... .. .++.+.|.++..+++... .+++++.++.++++++.+.
T Consensus 274 fSK~f~~pGlRiG~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~a~~~~L~~~~--~~~l~~~~~~l~~~r~~l~ 351 (462)
T PLN02187 274 ISKGWVVPGWKIGWIALNDPEGVFETTKVLQSIKQNLDVTPDPATIIQAALPAILEKAD--KNFFAKKNKILKHNVDLVC 351 (462)
T ss_pred chhhcCCccceeEEEEecCchhHHHHHHHHHHHHHhccccCCCCHHHHHHHHHHHhcCc--HHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999853 322 223333222 21 247799999999997532 6789999999999999999
Q ss_pred HHHHhcCC-c-eecCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEEecCCHHHHHH
Q 044773 162 SGLEKAGI-S-CLKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKL 239 (289)
Q Consensus 162 ~~l~~~g~-~-~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ris~~~~~~e~l~~ 239 (289)
+.|++++. . +..|++|+|+|++++..... ...+..+++..+++++||.+.||..|+. ++|+||+++. +++.+++
T Consensus 352 ~~L~~~~~~~~~~~P~gg~fl~~~l~~~~~~-~~~~~~~~~~~ll~~~gV~v~pG~~fg~--~~~iRis~~~-~~e~l~~ 427 (462)
T PLN02187 352 DRLKDIPCVVCPKKPESCTYLLTKLELSLMD-NIKDDIDFCVKLAREENLVFLPGDALGL--KNWMRITIGV-EAHMLED 427 (462)
T ss_pred HHHhhCCCCcCCCCCCEeEEEEeecChhhCC-CCCCHHHHHHHHHhhCCEEEECccccCC--CCeEEEEeCC-CHHHHHH
Confidence 99998743 3 24688999999988632111 0112346777888899999999999974 6899999995 7999999
Q ss_pred HHHHHHHHHHHHHH
Q 044773 240 SMQRLKAFVDSITT 253 (289)
Q Consensus 240 ~l~~l~~~l~~~~~ 253 (289)
++++|.++++...+
T Consensus 428 al~rL~~~l~~~~~ 441 (462)
T PLN02187 428 ALERLKGFCTRHAK 441 (462)
T ss_pred HHHHHHHHHHHhhh
Confidence 99999999987765
No 31
>PRK06107 aspartate aminotransferase; Provisional
Probab=100.00 E-value=4.8e-34 Score=261.11 Aligned_cols=227 Identities=23% Similarity=0.412 Sum_probs=187.2
Q ss_pred CCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHc-CCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEe
Q 044773 10 LKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEK-NIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVY 88 (289)
Q Consensus 10 ~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~-~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~ 88 (289)
+++++++++||+||||.+++.+++++|+++|+++ ++++|+||+|.++.|++....++.++.++ ..+++++++
T Consensus 165 ~~~~~v~l~~p~NPtG~~~s~~~~~~l~~~a~~~~~~~iI~De~y~~l~~~~~~~~~~~~~~~~-------~~~~vi~~~ 237 (402)
T PRK06107 165 PRTRWLILNAPSNPTGAVYSRAELRALADVLLRHPHVLVLTDDIYDHIRFDDEPTPHLLAAAPE-------LRDRVLVTN 237 (402)
T ss_pred cCceEEEEECCCCCCCcCcCHHHHHHHHHHHHHcCCeEEEEehhccccccCCCCCCCHHHhCcC-------ccCCEEEEe
Confidence 4688999999999999999999999999999998 99999999999887876666676666442 347899999
Q ss_pred cCccccCCCCceEEEEEecCHHHHHHHHhccc--cCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 044773 89 SLSKDLGLPGFRVGAIYSNDDTVVAAATKMSS--FGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEK 166 (289)
Q Consensus 89 s~sK~~g~~G~r~G~i~~~~~~~~~~~~~~~~--~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 166 (289)
||||.||++|+|+||++++++ +.+.+..... ...++.+.|.++..+|.++ ..++++.++.++++++.+.+.|++
T Consensus 238 S~SK~~~~pGlRiG~~~~~~~-~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~---~~~~~~~~~~~~~~~~~~~~~L~~ 313 (402)
T PRK06107 238 GVSKTYAMTGWRIGYAAGPAD-LIAAINKLQSQSSSCPSSISQAAAAAALNGD---QSFVTESVAVYKQRRDYALALLNA 313 (402)
T ss_pred ccchhhcCcccceeeeecCHH-HHHHHHHHHHhcccCCChHHHHHHHHHhcCC---hHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999654 4555544432 2447889999999999764 567889999999999999999988
Q ss_pred c-CCceecCCceEEEEEecCcccc-----CCChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEEecCCHHHHHHH
Q 044773 167 A-GISCLKSNAGLFCWVDMRHLLS-----SNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKLS 240 (289)
Q Consensus 167 ~-g~~~~~~~~g~~~~i~~~~~~~-----~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ris~~~~~~e~l~~~ 240 (289)
+ |+.+.+|++|+|+|++++...+ .....+..+++..+++++||.+.||..|+. .+++||+++. ++++++++
T Consensus 314 ~~g~~~~~p~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gv~v~pg~~Fg~--~~~iRis~~~-~~e~l~~~ 390 (402)
T PRK06107 314 IPGLSCLVPDGAFYLYVNCAGLIGKTTPEGKVLETDQDVVLYLLDSAGVAVVQGTAYGL--SPYFRLSIAT-SLETLEEA 390 (402)
T ss_pred CCCCcccCCCcceEEeeecccccccccccccCCCCHHHHHHHHHHhCCEEEeCccccCC--CCeEEEEeCC-CHHHHHHH
Confidence 7 8888899999999999853211 000113356788888899999999999975 5799999995 89999999
Q ss_pred HHHHHHHHHH
Q 044773 241 MQRLKAFVDS 250 (289)
Q Consensus 241 l~~l~~~l~~ 250 (289)
+++|++++++
T Consensus 391 l~~l~~~l~~ 400 (402)
T PRK06107 391 CARIERAVAA 400 (402)
T ss_pred HHHHHHHHHh
Confidence 9999998865
No 32
>PRK13355 bifunctional HTH-domain containing protein/aminotransferase; Provisional
Probab=100.00 E-value=5.9e-34 Score=267.97 Aligned_cols=229 Identities=20% Similarity=0.325 Sum_probs=181.1
Q ss_pred CCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEec
Q 044773 10 LKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVYS 89 (289)
Q Consensus 10 ~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~s 89 (289)
+++|+|+++|||||||.+++.+++++|+++|++++++||+||+|..+.+++....++.++.+ ...+++++|
T Consensus 280 ~~~k~i~i~nP~NPTG~v~~~~~l~~i~~~a~~~~~~ii~DE~Y~~~~~~~~~~~s~~~~~~---------~~~vi~~~S 350 (517)
T PRK13355 280 SRTKAIVIINPNNPTGALYPREVLQQIVDIAREHQLIIFSDEIYDRLVMDGLEHTSIASLAP---------DLFCVTFSG 350 (517)
T ss_pred cCceEEEEECCCCCCCcCcCHHHHHHHHHHHHHcCcEEEEehhhhhhcCCCCCcccHHHhCC---------CCeEEEEec
Confidence 57899999999999999999999999999999999999999999998887655667766632 235778899
Q ss_pred CccccCCCCceEEEEEec--CHH---HHHHHHhccc-cCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHH
Q 044773 90 LSKDLGLPGFRVGAIYSN--DDT---VVAAATKMSS-FGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSG 163 (289)
Q Consensus 90 ~sK~~g~~G~r~G~i~~~--~~~---~~~~~~~~~~-~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~ 163 (289)
|||+++++|+|+||++++ ++. +.+.+..... ..+.+.+.|.++..+|.......+++++.++.+ ++++++.+.
T Consensus 351 ~SK~~~~~G~RiG~~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~~q~a~~~aL~~~~~~~~~~~~~~~~~-~~r~~l~~~ 429 (517)
T PRK13355 351 LSKSHMIAGYRIGWMILSGNKRIAKDYIEGLNMLANMRLCSNVPAQSIVQTALGGHQSVKDYLVPGGRVY-EQRELVYNA 429 (517)
T ss_pred chhhccCcccceEEEEeeCchhhHHHHHHHHHHHhcCcCCcChHHHHHHHHHhcCCccHHHHHHHHHHHH-HHHHHHHHH
Confidence 999999999999999964 222 2222222222 244778999999999975432356666655544 557999999
Q ss_pred HHhc-CCceecCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEEecCCHHHHHHHHH
Q 044773 164 LEKA-GISCLKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKLSMQ 242 (289)
Q Consensus 164 l~~~-g~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ris~~~~~~e~l~~~l~ 242 (289)
|+++ |+++.+|+|+||+|++++..... ..+..+++..+++++||.+.||..|+...+++|||+++ .++++++++++
T Consensus 430 L~~~~g~~~~~p~g~fy~~~~l~~~~~~--~~~~~~~~~~ll~~~gV~v~pg~~F~~~~~~~~Ris~~-~~~~~l~~a~~ 506 (517)
T PRK13355 430 LNAIPGISAVKPKAAFYIFPKIDVKKFN--IHDDEQFALDLLHDKKVLIVQGTGFNWDKPDHFRVVYL-PRLEDLEDAMD 506 (517)
T ss_pred HhcCCCcccCCCCeeeEEEeecCcccCC--CCCHHHHHHHHHHhCCEEEeCcchhCCCCcCEEEEEeC-CCHHHHHHHHH
Confidence 9988 89999999999999998742100 11234677788889999999999998767889999997 58999999999
Q ss_pred HHHHHHHHH
Q 044773 243 RLKAFVDSI 251 (289)
Q Consensus 243 ~l~~~l~~~ 251 (289)
+|+++++..
T Consensus 507 rl~~~~~~~ 515 (517)
T PRK13355 507 RLADFFSYY 515 (517)
T ss_pred HHHHHHHHh
Confidence 999998754
No 33
>KOG0257 consensus Kynurenine aminotransferase, glutamine transaminase K [Amino acid transport and metabolism]
Probab=100.00 E-value=1.6e-35 Score=257.86 Aligned_cols=230 Identities=22% Similarity=0.362 Sum_probs=187.5
Q ss_pred hhCCCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEE
Q 044773 7 KRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHI 86 (289)
Q Consensus 7 ~~~~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~ 86 (289)
+.++++|+|++|+||||||.++++++|++|+++|++||+++|.||+|..+.+++....+++.+ | +++++++-
T Consensus 168 ~~t~kTk~Ii~ntPhNPtGkvfsReeLe~ia~l~~k~~~lvisDevYe~~v~d~~~h~r~asl-P-------gm~ertit 239 (420)
T KOG0257|consen 168 KITEKTKAIILNTPHNPTGKVFSREELERIAELCKKHGLLVISDEVYEWLVYDGNKHIRIASL-P-------GMYERTIT 239 (420)
T ss_pred hccCCccEEEEeCCCCCcCcccCHHHHHHHHHHHHHCCEEEEEhhHhHHHhhCCCcceeeecC-C-------chhheEEE
Confidence 345789999999999999999999999999999999999999999999999998877788777 5 58999999
Q ss_pred EecCccccCCCCceEEEEEecCHHHHHHHHhc-cccCCCChHHHHHHHHHhCCchHH-----HHHHHHHHHHHHHHHHHH
Q 044773 87 VYSLSKDLGLPGFRVGAIYSNDDTVVAAATKM-SSFGLVSSQTQYLLSALLSDKKFA-----QNYISENKKRLKQRHRKL 160 (289)
Q Consensus 87 i~s~sK~~g~~G~r~G~i~~~~~~~~~~~~~~-~~~~~~~~~~q~~~~~~l~~~~~~-----~~~~~~~~~~~~~~~~~l 160 (289)
++|+||++|++|||+||+++++..+....... ...+.++++.|.+.+.++....-+ ..+..++.+.|+++++.|
T Consensus 240 vgS~gKtf~~TGWrlGW~igp~~L~~~~~~vh~~~~~~~~Tp~q~A~a~a~~~~~~~~~p~~~y~~~~~~~~y~~krdil 319 (420)
T KOG0257|consen 240 VGSFGKTFGVTGWRLGWAIGPKHLYSALFPVHQNFVFTCPTPIQEASAAAFALELACLQPGGSYFITELVKEYKEKRDIL 319 (420)
T ss_pred eccccceeeeeeeeeeeeechHHhhhhHHHHhhccccccCcHHHHHHHHHHhhhhhccCCcchhHHHHHHHHHHHHHHHH
Confidence 99999999999999999999544444333222 222347778888888887754310 144666999999999999
Q ss_pred HHHHHhcCCceecCCceEEEEEecCccccC---C---ChhhHHHHHHHHHHhcCeEEeCCCCCCCCC-----CCeEEEEE
Q 044773 161 VSGLEKAGISCLKSNAGLFCWVDMRHLLSS---N---TFEAEMELWKKIVYDVKLNISPGSSCHCTE-----PGWFRVCF 229 (289)
Q Consensus 161 ~~~l~~~g~~~~~~~~g~~~~i~~~~~~~~---~---~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~-----~~~~Ris~ 229 (289)
.+.|.++|+++..|+|++|+|++++..... + ...++..++.-++++.|+.+.|++.|+..+ .+++|+++
T Consensus 320 ~k~L~~lg~~v~~p~gayyl~adfs~~~~~~~~~~~~~~~~d~~~~~wl~~~~Gv~~IP~saF~s~~~~~~~~~~~r~~~ 399 (420)
T KOG0257|consen 320 AKALEELGLKVTGPEGAYYLWADFSLAKSWPFFEEILEKPDDFKFVRWLIKEGGVVVIPPSAFGSREHIKVAERLVRFCF 399 (420)
T ss_pred HHHHHhcCCccccCCCceEEEEeccccccCCcchhhccCCCceeeehhhhccCcEEEeCchhcCCchhhHHHHHHHHHHH
Confidence 999999999999999999999999821111 0 112335688889999999999999999744 35789999
Q ss_pred ecCCHHHHHHHHHHHH
Q 044773 230 ANMSEDTLKLSMQRLK 245 (289)
Q Consensus 230 ~~~~~e~l~~~l~~l~ 245 (289)
.. +.+.++.+.++|+
T Consensus 400 ~k-~~~~L~~a~e~l~ 414 (420)
T KOG0257|consen 400 CK-ADETLRKAIERLK 414 (420)
T ss_pred Hh-hHHHHHHHHHHHh
Confidence 75 7889999999987
No 34
>PTZ00433 tyrosine aminotransferase; Provisional
Probab=100.00 E-value=7.4e-34 Score=260.61 Aligned_cols=228 Identities=23% Similarity=0.392 Sum_probs=183.6
Q ss_pred CCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEec
Q 044773 10 LKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVYS 89 (289)
Q Consensus 10 ~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~s 89 (289)
+++++|+++|||||||.+++.+++++|+++|+++|++||+||+|.++.+.+....++..+. ...++++++|
T Consensus 176 ~~~~~i~~~~p~NPtG~~~s~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~---------~~~~~i~~~S 246 (412)
T PTZ00433 176 DRTKALIMTNPSNPCGSNFSRKHVEDIIRLCEELRLPLISDEIYAGMVFNGATFTSVADFD---------TTVPRVILGG 246 (412)
T ss_pred cCceEEEEeCCCCCCCcccCHHHHHHHHHHHHHcCCeEEEeccccccccCCCCccchhhcc---------CCCceEEEcc
Confidence 3689999999999999999999999999999999999999999998877654445555552 2345789999
Q ss_pred CccccCCCCceEEEEEe--cC---HHHHHHHHhccc-cCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHH
Q 044773 90 LSKDLGLPGFRVGAIYS--ND---DTVVAAATKMSS-FGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSG 163 (289)
Q Consensus 90 ~sK~~g~~G~r~G~i~~--~~---~~~~~~~~~~~~-~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~ 163 (289)
|||.+|++|+|+||+++ |+ +.+.+.+..... ...++++.|.++..++.+. . +.++++.++.++++++.+.+.
T Consensus 247 fSK~~~~pGlRlG~~i~~~p~~~~~~~~~~~~~~~~~~~~~~~~~q~a~~~~l~~~-~-~~~~~~~~~~~~~~r~~l~~~ 324 (412)
T PTZ00433 247 TAKNLVVPGWRLGWLLLVDPHGNGGDFLDGMKRLGMLVCGPCSVVQAALGEALLNT-P-QEHLEQIVAKLEEGAMVLYNH 324 (412)
T ss_pred chhhcCCCCeeEEEEEEeCCcccHHHHHHHHHHHhhccCCCChHHHHHHHHHHhcC-c-HHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999997 21 234444444332 2357889999999999864 3 678899999999999999999
Q ss_pred HHhc-CCceecCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEEecCCHHHHHHHHH
Q 044773 164 LEKA-GISCLKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKLSMQ 242 (289)
Q Consensus 164 l~~~-g~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ris~~~~~~e~l~~~l~ 242 (289)
|++. |+.+..|++|+|+|++++...-. ...+..+++..+++++||.+.||..|+. ++++||+++. .+++++++++
T Consensus 325 L~~~~~~~~~~p~gg~f~~~~l~~~~~~-~~~~~~~~~~~ll~~~gV~v~pg~~f~~--~~~iRis~~~-~~e~l~~al~ 400 (412)
T PTZ00433 325 IGECIGLSPTMPRGSMFLMSRLDLEKFR-DIKSDVEFYEKLLEEENVQVLPGEIFHM--PGFTRLTISR-PVEVLREAVE 400 (412)
T ss_pred HhcCCCCcccCCCeeEEEEEEechhhcC-CCCCHHHHHHHHHHhcCEEEeCccccCC--CCeEEEEecC-CHHHHHHHHH
Confidence 9886 78888999999999998742100 0012256888888778999999999974 5799999985 7899999999
Q ss_pred HHHHHHHHHH
Q 044773 243 RLKAFVDSIT 252 (289)
Q Consensus 243 ~l~~~l~~~~ 252 (289)
+|.++++...
T Consensus 401 ~l~~~~~~~~ 410 (412)
T PTZ00433 401 RIKAFCERHK 410 (412)
T ss_pred HHHHHHHHhc
Confidence 9999987654
No 35
>TIGR01264 tyr_amTase_E tyrosine aminotransferase, eukaryotic. This model describes tyrosine aminotransferase as found in animals and Trypanosoma cruzi. It is the first enzyme of a pathway of tyrosine degradation via homogentisate. Several plant enzyme designated as probable tyrosine aminotransferases are very closely related to an experimentally demonstrated nicotianamine aminotransferase, an enzyme in a siderophore (iron uptake chelator) biosynthesis pathway. These plant sequences are excluded from the model seed and score between the trusted an noise cutoffs.
Probab=100.00 E-value=8.6e-34 Score=259.43 Aligned_cols=226 Identities=23% Similarity=0.359 Sum_probs=182.5
Q ss_pred CCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEec
Q 044773 10 LKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVYS 89 (289)
Q Consensus 10 ~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~s 89 (289)
.++++++++|||||||.+++.+++++|+++|++++++||+||+|.++.+++....++.++. ...++++++|
T Consensus 167 ~~~~~v~~~~p~NPtG~~~~~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~---------~~~~vi~~~S 237 (401)
T TIGR01264 167 EKTAALIVNNPSNPCGSVFSRQHLEEILAVAERQCLPIIADEIYGDMVFSGATFEPLASLS---------STVPILSCGG 237 (401)
T ss_pred cCceEEEEcCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEhhhhhhccCCcccccHHHcC---------CCCcEEEEcc
Confidence 3579999999999999999999999999999999999999999999877665455665552 2246899999
Q ss_pred CccccCCCCceEEEEEecCH-----HHHHHHHhcc-ccCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHH
Q 044773 90 LSKDLGLPGFRVGAIYSNDD-----TVVAAATKMS-SFGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSG 163 (289)
Q Consensus 90 ~sK~~g~~G~r~G~i~~~~~-----~~~~~~~~~~-~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~ 163 (289)
|||+|+++|+|+||++++++ .+.+.+.... ....++++.|.++..++.+. . ++++++.++.++++++.+.+.
T Consensus 238 fSK~~~~~GlRiG~iv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~a~~~~l~~~-~-~~~l~~~~~~~~~~r~~l~~~ 315 (401)
T TIGR01264 238 LAKRWLVPGWRLGWIIIHDRRGILRDIRDGLVKLSQRILGPCTIVQGALPSILLRT-P-QEYFDGTLSVLESNAMLCYGA 315 (401)
T ss_pred CcccCCCccceEEEEEecCcchhHHHHHHHHHHHhhccCCCCcHHHHHHHHHHHhC-c-HHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999742 2233333332 23447889999999999763 2 678899999999999999999
Q ss_pred HHhc-CCceecCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEEecCCHHHHHHHHH
Q 044773 164 LEKA-GISCLKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKLSMQ 242 (289)
Q Consensus 164 l~~~-g~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ris~~~~~~e~l~~~l~ 242 (289)
|+++ |+.+..|++|+|+|++++...-. ...+..+++..+++++||.+.||..|+. ++++||+++. ++++++++++
T Consensus 316 L~~~~~~~~~~p~~g~f~~~~~~~~~~~-~~~~~~~~~~~l~~~~gI~v~pg~~f~~--~~~iRis~~~-~~~~l~~~l~ 391 (401)
T TIGR01264 316 LAAVPGLRPVMPSGAMYMMVGIEMEHFP-EFKNDVEFTERLVAEQSVFCLPGSCFEY--PGFFRVVLTV-PVVMMEEACS 391 (401)
T ss_pred HHhCCCCcccCCCeeeEEEEEecccccC-CCCCHHHHHHHHHHhCCEEEeCchhcCC--CCeEEEEEcC-CHHHHHHHHH
Confidence 9988 77778899999999998642000 0112356888888888999999999863 6899999985 7899999999
Q ss_pred HHHHHHHH
Q 044773 243 RLKAFVDS 250 (289)
Q Consensus 243 ~l~~~l~~ 250 (289)
+|.+++++
T Consensus 392 rl~~~~~~ 399 (401)
T TIGR01264 392 RIQEFCER 399 (401)
T ss_pred HHHHHHhc
Confidence 99998864
No 36
>PRK08912 hypothetical protein; Provisional
Probab=100.00 E-value=5.9e-34 Score=259.33 Aligned_cols=224 Identities=25% Similarity=0.388 Sum_probs=180.3
Q ss_pred CCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEec
Q 044773 10 LKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVYS 89 (289)
Q Consensus 10 ~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~s 89 (289)
+++++++++|||||||.+++.+++++|+++|+++++++|+||+|.++.+++....++.++. +..+++++++|
T Consensus 158 ~~~~~v~l~~p~NPtG~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~--------~~~~~~i~~~S 229 (387)
T PRK08912 158 PRTKAVLLNNPLNPAGKVFPREELALLAEFCQRHDAVAICDEVWEHVVFDGRRHIPLMTLP--------GMRERTVKIGS 229 (387)
T ss_pred ccceEEEEeCCCCCcCcccCHHHHHHHHHHHHHCCeEEEEhhhhhhcccCCCCCcChhhCC--------CccCceEEEee
Confidence 4689999999999999999999999999999999999999999998877654444554442 12468999999
Q ss_pred CccccCCCCceEEEEEecCHHHHHHHHhcccc--CCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 044773 90 LSKDLGLPGFRVGAIYSNDDTVVAAATKMSSF--GLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEKA 167 (289)
Q Consensus 90 ~sK~~g~~G~r~G~i~~~~~~~~~~~~~~~~~--~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 167 (289)
|||.+|++|+|+||++++++. .+.+...... ...++..|.++..++... .+++++.++.++++++.+.+.|++.
T Consensus 230 ~SK~~g~~GlRiG~~~~~~~~-~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~---~~~~~~~~~~~~~~~~~l~~~L~~~ 305 (387)
T PRK08912 230 AGKIFSLTGWKVGFVCAAPPL-LRVLAKAHQFLTFTTPPNLQAAVAYGLGKP---DDYFEGMRADLARSRDRLAAGLRRI 305 (387)
T ss_pred chhhccCcCceeEEEecCHHH-HHHHHHHHhhccccCChHHHHHHHHHHhCC---HHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 999999999999999996544 4444333222 335667788887777643 5567888999999999999999999
Q ss_pred CCceecCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCC--CCCCeEEEEEecCCHHHHHHHHHHHH
Q 044773 168 GISCLKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHC--TEPGWFRVCFANMSEDTLKLSMQRLK 245 (289)
Q Consensus 168 g~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~--~~~~~~Ris~~~~~~e~l~~~l~~l~ 245 (289)
|+++.++++|+|+|++++..... .+..+++..+++++||.+.||..|+. ...+++||+++. +++++++++++|+
T Consensus 306 g~~~~~~~g~~~l~~~l~~~~~~---~~~~~~~~~l~~~~gV~v~pg~~f~~~~~~~~~iRl~~~~-~~~~l~~~l~rl~ 381 (387)
T PRK08912 306 GFPVLPSQGTYFLTVDLAPLGLA---EDDVAFCRRLVEEAGVAAIPVSAFYEEDPVTSVVRFCFAK-RDATLDEAVERLA 381 (387)
T ss_pred CCcccCCCcceEEEecccccCCC---CCHHHHHHHHHhcCCEEEecchhhCCCCCCCCEEEEEEeC-CHHHHHHHHHHHH
Confidence 99999999999999998752111 12356888888888999999999864 236899999996 7899999999999
Q ss_pred HHHH
Q 044773 246 AFVD 249 (289)
Q Consensus 246 ~~l~ 249 (289)
++++
T Consensus 382 ~~l~ 385 (387)
T PRK08912 382 AARR 385 (387)
T ss_pred HHHh
Confidence 8775
No 37
>PRK06108 aspartate aminotransferase; Provisional
Probab=100.00 E-value=6.6e-34 Score=258.48 Aligned_cols=221 Identities=22% Similarity=0.444 Sum_probs=182.2
Q ss_pred CCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccC-CCCccChhhhhhccccccCCCCCceEEEe
Q 044773 10 LKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFS-SPGFVSIMEILKDRNCENTEVWNRVHIVY 88 (289)
Q Consensus 10 ~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~-~~~~~~~~~~~~~~~~~~~d~~~~~i~i~ 88 (289)
++++++++++||||||.+++.+++++|+++|+++++++|+||+|.++.++ +....++.++.. ..+++++++
T Consensus 157 ~~~~~i~l~~p~NPtG~~~~~~~~~~l~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~--------~~~~~i~~~ 228 (382)
T PRK06108 157 PRTRALFINSPNNPTGWTASRDDLRAILAHCRRHGLWIVADEVYERLYYAPGGRAPSFLDIAE--------PDDRIIFVN 228 (382)
T ss_pred ccceEEEEECCCCCCCcccCHHHHHHHHHHHHHCCcEEEEehhhhhhccCCCCCCCCHhhcCC--------CcCCEEEEe
Confidence 46899999999999999999999999999999999999999999988775 333344444422 346899999
Q ss_pred cCccccCCCCceEEEEEecCHHHHHHHHhccc--cCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 044773 89 SLSKDLGLPGFRVGAIYSNDDTVVAAATKMSS--FGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEK 166 (289)
Q Consensus 89 s~sK~~g~~G~r~G~i~~~~~~~~~~~~~~~~--~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 166 (289)
||||.+|++|+|+||++++++ +.+.+..... ...++.+.|.++..++..+ .+++++.+++++++++.+.+.|++
T Consensus 229 S~SK~~g~~G~RiG~~~~~~~-~~~~~~~~~~~~~~~~~~~~q~a~~~~l~~~---~~~~~~~~~~~~~~~~~l~~~L~~ 304 (382)
T PRK06108 229 SFSKNWAMTGWRLGWLVAPPA-LGQVLEKLIEYNTSCVAQFVQRAAVAALDEG---EDFVAELVARLRRSRDHLVDALRA 304 (382)
T ss_pred echhhccCcccceeeeeCCHH-HHHHHHHHHHhcccCCChHHHHHHHHHHhCC---hHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999654 4444433322 2336788999999999875 456788889999999999999988
Q ss_pred c-CCceecCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEEecCCHHHHHHHHHHHH
Q 044773 167 A-GISCLKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKLSMQRLK 245 (289)
Q Consensus 167 ~-g~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ris~~~~~~e~l~~~l~~l~ 245 (289)
+ |+++..|++|+|+|++++...+ ..+++..+++++||.+.||..|++.+++++||+++. +++++++++++|+
T Consensus 305 ~~~~~~~~p~~g~~~~~~l~~~~~------~~~~~~~ll~~~gV~v~pg~~f~~~~~~~~Ris~~~-~~~~l~~~l~~l~ 377 (382)
T PRK06108 305 LPGVEVAKPDGAMYAFFRIPGVTD------SLALAKRLVDEAGLGLAPGTAFGPGGEGFLRWCFAR-DPARLDEAVERLR 377 (382)
T ss_pred CCCCcccCCCeeEEEEEeCCCCCC------HHHHHHHHHHhCCEEEeCchhhCCCCCCEEEEEecC-CHHHHHHHHHHHH
Confidence 7 8888899999999999875432 256888888889999999999976667899999997 8999999999999
Q ss_pred HHHH
Q 044773 246 AFVD 249 (289)
Q Consensus 246 ~~l~ 249 (289)
++++
T Consensus 378 ~~l~ 381 (382)
T PRK06108 378 RFLA 381 (382)
T ss_pred HHHh
Confidence 8764
No 38
>PLN02231 alanine transaminase
Probab=100.00 E-value=1.3e-33 Score=264.78 Aligned_cols=239 Identities=21% Similarity=0.318 Sum_probs=183.3
Q ss_pred CccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccC-CCCccChhhhhhccccccCCCCCceEEEec
Q 044773 11 KVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFS-SPGFVSIMEILKDRNCENTEVWNRVHIVYS 89 (289)
Q Consensus 11 ~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~-~~~~~~~~~~~~~~~~~~~d~~~~~i~i~s 89 (289)
++|+++++|||||||.+++.+++++|+++|++++++||+||+|.++.|+ +..+.++.++..+.++ .+...++++++|
T Consensus 271 ~~k~ivl~nP~NPTG~vls~e~l~~Iv~~a~~~~l~lI~DEvY~~l~y~~~~~~~s~~~~~~~~g~--~~~~~~vi~l~S 348 (534)
T PLN02231 271 TVRALVVINPGNPTGQVLAEENQRDIVEFCKQEGLVLLADEVYQENVYVPDKKFHSFKKVARSMGY--GEKDISLVSFQS 348 (534)
T ss_pred CeEEEEEeCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEEccchhcccCCCCCcccHHHHHhhhcc--ccCCceEEEEec
Confidence 6899999999999999999999999999999999999999999999885 4556677666432100 001236899999
Q ss_pred Ccccc-CCCCceEEEEEec--CHHHHHHHHhccc-cCCCChHHHHHHHHHhCC-----chHHHHH---HHHHHHHHHHHH
Q 044773 90 LSKDL-GLPGFRVGAIYSN--DDTVVAAATKMSS-FGLVSSQTQYLLSALLSD-----KKFAQNY---ISENKKRLKQRH 157 (289)
Q Consensus 90 ~sK~~-g~~G~r~G~i~~~--~~~~~~~~~~~~~-~~~~~~~~q~~~~~~l~~-----~~~~~~~---~~~~~~~~~~~~ 157 (289)
|||.+ |++|+|+||++++ ++.+.+.+.+... ..+.+.+.|.++..++.. ..+ +.+ ..++++.|++++
T Consensus 349 ~SK~~~g~pGlRiGy~~~~~~~~~l~~~l~k~~~~~~~s~~~~Q~~~~~~l~~p~~~~~~y-~~~~~~~~~i~~~~~~r~ 427 (534)
T PLN02231 349 VSKGYYGECGKRGGYMEVTGFTSDVREQIYKVASVNLCSNISGQILASLVMSPPKPGDESY-ESYMAEKDGILSSLARRA 427 (534)
T ss_pred cCcccccCCccceEEEEEecCCHHHHHHHHHHHhhhcCCChHHHHHHHHHhCCCCCCcchH-HHHHHHHHHHHHHHHHHH
Confidence 99976 7899999999874 4556555544333 233566888888888864 234 443 445688999999
Q ss_pred HHHHHHHHhc-CCceecCCceEEEEEecCccccC------CChhhHHHHHHHHHHhcCeEEeCCCCCCC-CCCCeEEEEE
Q 044773 158 RKLVSGLEKA-GISCLKSNAGLFCWVDMRHLLSS------NTFEAEMELWKKIVYDVKLNISPGSSCHC-TEPGWFRVCF 229 (289)
Q Consensus 158 ~~l~~~l~~~-g~~~~~~~~g~~~~i~~~~~~~~------~~~~~~~~~~~~ll~~~gi~v~pg~~f~~-~~~~~~Ris~ 229 (289)
+.+.+.|+++ |+.+.+|+||||+|+++.-+... ....+...++..+++++||.+.||+.|+. .+..++|+++
T Consensus 428 ~~l~~~L~~~~gi~~~~p~Ggfylw~~l~lp~~~~~~~~~~~~~~d~~~~~~Ll~~~GV~vvPGs~Fg~~~g~~~~Rit~ 507 (534)
T PLN02231 428 KTLEDALNSLEGVTCNKAEGAMYLFPRIHLPQKAIKAAEAAKTAPDAFYCKRLLNATGIVVVPGSGFGQVPGTWHFRCTI 507 (534)
T ss_pred HHHHHHHhcCCCceecCCCeeeEEeccccCcHHHHHHHhhcCCCcHHHHHHHHHHhcCEEEeCCcccCCCCCCCeEEEEe
Confidence 9999999988 89999999999999665321110 00011234678888899999999999986 3456799999
Q ss_pred ecCCHHHHHHHHHHHHHHHHHHHH
Q 044773 230 ANMSEDTLKLSMQRLKAFVDSITT 253 (289)
Q Consensus 230 ~~~~~e~l~~~l~~l~~~l~~~~~ 253 (289)
+ .+++++++++++|.+++++..+
T Consensus 508 ~-~~~e~l~eal~RL~~~~~~~~~ 530 (534)
T PLN02231 508 L-PQEDKIPAIVSRLTEFHKSFMD 530 (534)
T ss_pred C-CCHHHHHHHHHHHHHHHHHHHH
Confidence 7 5899999999999999988765
No 39
>PRK09147 succinyldiaminopimelate transaminase; Provisional
Probab=100.00 E-value=7.7e-34 Score=259.30 Aligned_cols=222 Identities=18% Similarity=0.306 Sum_probs=174.6
Q ss_pred CCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCC-CccChhhhhhccccccCCCCCceEEEe
Q 044773 10 LKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSP-GFVSIMEILKDRNCENTEVWNRVHIVY 88 (289)
Q Consensus 10 ~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~-~~~~~~~~~~~~~~~~~d~~~~~i~i~ 88 (289)
+++|+++++|||||||.+++.+++++|+++|++++++||+||+|..+.+++. ...+........ +.+..+++++++
T Consensus 165 ~~~k~i~l~nP~NPTG~~~s~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~---~~~~~~~vi~~~ 241 (396)
T PRK09147 165 ARTQLLFVCSPGNPTGAVLPLDDWKKLFALSDRYGFVIASDECYSEIYFDEAAPPLGLLEAAAEL---GRDDFKRLVVFH 241 (396)
T ss_pred hccEEEEEcCCCCCcCccCCHHHHHHHHHHHHHcCeEEEeeccccccccCCCCCCchhhhhcccc---CccccccEEEEe
Confidence 3789999999999999999999999999999999999999999999877653 222222111100 002357899999
Q ss_pred cCccccCCCCceEEEEEecCHHHHHHHHhccc--cCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 044773 89 SLSKDLGLPGFRVGAIYSNDDTVVAAATKMSS--FGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEK 166 (289)
Q Consensus 89 s~sK~~g~~G~r~G~i~~~~~~~~~~~~~~~~--~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 166 (289)
||||.++++|+|+||++++++ +.+.+..... ...++++.|.++...+.. .+++++.++.++++++.+.+.|++
T Consensus 242 S~SK~~~~~GlRiG~~~~~~~-l~~~~~~~~~~~~~~~~~~~q~a~~~~~~~----~~~~~~~~~~~~~~~~~~~~~L~~ 316 (396)
T PRK09147 242 SLSKRSNVPGLRSGFVAGDAA-LLKKFLLYRTYHGCAMPPAVQAASIAAWND----EAHVRENRALYREKFDAVTPILAP 316 (396)
T ss_pred ccccccCCccceeeeecCCHH-HHHHHHHHhhhcccCCCHHHHHHHHHHhcc----hhHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999654 4444443332 234677888887777754 456888999999999999999988
Q ss_pred cCCceecCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCC------CCCCeEEEEEecCCHHHHHHH
Q 044773 167 AGISCLKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHC------TEPGWFRVCFANMSEDTLKLS 240 (289)
Q Consensus 167 ~g~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~------~~~~~~Ris~~~~~~e~l~~~ 240 (289)
. +.+..|++|+|+|++++ .+ ..+++..+++++||.+.||..|+. .+.+++||+++. ++++++++
T Consensus 317 ~-~~~~~p~~g~f~~~~~~--~~------~~~~~~~ll~~~gv~v~pg~~f~~~~~~~~~~~~~iRi~~~~-~~~~l~~~ 386 (396)
T PRK09147 317 V-LDVQLPDAGFYLWAKVP--GD------DTEFARRLYADYNVTVLPGSYLAREAHGVNPGAGRVRIALVA-PLAECVEA 386 (396)
T ss_pred h-cCCCCCCeeEEEEEECC--CC------HHHHHHHHHHhCCEEEeCCccccccccCCCCCCCeEEEEecC-CHHHHHHH
Confidence 5 67778999999999987 11 246888888888999999999863 235799999985 78999999
Q ss_pred HHHHHHHHH
Q 044773 241 MQRLKAFVD 249 (289)
Q Consensus 241 l~~l~~~l~ 249 (289)
+++|++++.
T Consensus 387 l~rl~~~~~ 395 (396)
T PRK09147 387 AERIVDFCR 395 (396)
T ss_pred HHHHHHHhc
Confidence 999998764
No 40
>PRK07683 aminotransferase A; Validated
Probab=100.00 E-value=1e-33 Score=257.73 Aligned_cols=224 Identities=26% Similarity=0.446 Sum_probs=183.3
Q ss_pred CCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEec
Q 044773 10 LKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVYS 89 (289)
Q Consensus 10 ~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~s 89 (289)
+++++++++|||||||.+++.+++++|+++|+++|+++|+||+|.++.+.+. ..++.++. |..+++++++|
T Consensus 160 ~~~~~i~i~~p~NPtG~~~s~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~-~~~~~~~~--------~~~~~vi~~~s 230 (387)
T PRK07683 160 EKTRCVVLPYPSNPTGVTLSKEELQDIADVLKDKNIFVLSDEIYSELVYEQP-HTSIAHFP--------EMREKTIVING 230 (387)
T ss_pred cCceEEEEeCCCCCCCcCCCHHHHHHHHHHHHHcCeEEEEecccccceeCCC-cCChhhcc--------CCcCCeEEEee
Confidence 4689999999999999999999999999999999999999999998866543 34555442 24578999999
Q ss_pred CccccCCCCceEEEEEecCHHHHHHHHhccc--cCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 044773 90 LSKDLGLPGFRVGAIYSNDDTVVAAATKMSS--FGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEKA 167 (289)
Q Consensus 90 ~sK~~g~~G~r~G~i~~~~~~~~~~~~~~~~--~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 167 (289)
|||.+|+||+|+||++++++ +.+.+..... ...++++.|.++..++..+ ..+.++.++.++++++.+.+.|.+.
T Consensus 231 ~SK~~~~pGlRiG~i~~~~~-l~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~---~~~~~~~~~~~~~~~~~~~~~l~~~ 306 (387)
T PRK07683 231 LSKSHSMTGWRIGFLFAPSY-LAKHILKVHQYNVTCASSISQYAALEALTAG---KDDAKMMRHQYKKRRDYVYNRLISM 306 (387)
T ss_pred ccccccCccceeEEEEcCHH-HHHHHHHHHHhccCCCChHHHHHHHHHHhCC---hHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 99999999999999999654 4444333222 2335778999999999875 3457888899999999999999988
Q ss_pred CCceecCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEEecCCHHHHHHHHHHHHHH
Q 044773 168 GISCLKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKLSMQRLKAF 247 (289)
Q Consensus 168 g~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ris~~~~~~e~l~~~l~~l~~~ 247 (289)
++.+.++++|+|+|+.++... .+..+++..+++++||.+.||+.|+..+++++||+++. +++++.+++++|.++
T Consensus 307 ~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~Ri~~~~-~~~~~~~al~~l~~~ 380 (387)
T PRK07683 307 GLDVEKPTGAFYLFPSIGHFT-----MSSFDFALDLVEEAGLAVVPGSAFSEYGEGYVRLSYAY-SIETLKEGLDRLEAF 380 (387)
T ss_pred CCcccCCCeeEEEEEecccCC-----CCHHHHHHHHHHhCCEEEcCchhhCCCCCCeEEEEecC-CHHHHHHHHHHHHHH
Confidence 888899999999999887521 11245777778889999999999987667899999996 899999999999998
Q ss_pred HHHHH
Q 044773 248 VDSIT 252 (289)
Q Consensus 248 l~~~~ 252 (289)
+++..
T Consensus 381 l~~~~ 385 (387)
T PRK07683 381 LQQKA 385 (387)
T ss_pred HHhhc
Confidence 87544
No 41
>PRK08361 aspartate aminotransferase; Provisional
Probab=100.00 E-value=4.8e-34 Score=260.25 Aligned_cols=222 Identities=18% Similarity=0.371 Sum_probs=185.0
Q ss_pred CCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEec
Q 044773 10 LKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVYS 89 (289)
Q Consensus 10 ~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~s 89 (289)
+++++++++|||||||.+++.+++++|+++|+++++++|+||+|.++.+++....++.+. ..+++++++|
T Consensus 165 ~~~~~v~i~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~----------~~~~~i~~~s 234 (391)
T PRK08361 165 KRTRMIVINYPNNPTGATLDKEVAKAIADIAEDYNIYILSDEPYEHFLYEGAKHYPMIKY----------APDNTILANS 234 (391)
T ss_pred cccEEEEEeCCCCCCCcCcCHHHHHHHHHHHHHcCeEEEEEcccccceeCCCCCCCHhhc----------CCCCEEEEec
Confidence 468899999999999999999999999999999999999999999887655444455444 2367899999
Q ss_pred CccccCCCCceEEEEEecCHHHHHHHHhccc--cCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 044773 90 LSKDLGLPGFRVGAIYSNDDTVVAAATKMSS--FGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEKA 167 (289)
Q Consensus 90 ~sK~~g~~G~r~G~i~~~~~~~~~~~~~~~~--~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 167 (289)
|||.+|++|+|+||++++++.+. .+..... .+.++++.|.++..+++++.+ .+++++.++.++++++.+.+.|++.
T Consensus 235 ~SK~~~~~GlRiG~~~~~~~~~~-~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~L~~~ 312 (391)
T PRK08361 235 FSKTFAMTGWRLGFVIAPEQVIK-DMIKLHAYIIGNVASFVQIAGIEALRSKES-WKAVEEMRKEYNERRKLVLKRLKEM 312 (391)
T ss_pred CchhcCCcHhhhhhhccCHHHHH-HHHHHHhhhccCCChHHHHHHHHHhcCCcc-cHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 99999999999999999655444 3333322 244778999999999988765 5678999999999999999999987
Q ss_pred -CCceecCCceEEEEEecCc-cccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEEecCCHHHHHHHHHHHH
Q 044773 168 -GISCLKSNAGLFCWVDMRH-LLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKLSMQRLK 245 (289)
Q Consensus 168 -g~~~~~~~~g~~~~i~~~~-~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ris~~~~~~e~l~~~l~~l~ 245 (289)
++.+.+|++|+|+|++++. ..+ ..+++..+++++||.+.||..|+..+++++||+++. +++++++++++|+
T Consensus 313 ~~~~~~~p~g~~~~~~~l~~~~~~------~~~l~~~l~~~~gv~v~pg~~f~~~~~~~iRi~~~~-~~~~l~~al~~l~ 385 (391)
T PRK08361 313 PHIKVFEPKGAFYVFANIDETGMS------SEDFAEWLLEKARVVVIPGTAFGKAGEGYIRISYAT-SKEKLIEAMERME 385 (391)
T ss_pred CCCeecCCCEEEEEEEECCCCCCC------HHHHHHHHHHhCCEEEcCchhhCCCCCCEEEEEecC-CHHHHHHHHHHHH
Confidence 8888999999999999974 222 256788888788999999999987667899999995 7889999999999
Q ss_pred HHHHH
Q 044773 246 AFVDS 250 (289)
Q Consensus 246 ~~l~~ 250 (289)
+++++
T Consensus 386 ~~l~~ 390 (391)
T PRK08361 386 KALEE 390 (391)
T ss_pred HHHhc
Confidence 98764
No 42
>PLN00143 tyrosine/nicotianamine aminotransferase; Provisional
Probab=100.00 E-value=1.5e-33 Score=258.29 Aligned_cols=229 Identities=24% Similarity=0.369 Sum_probs=177.9
Q ss_pred CCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEec
Q 044773 10 LKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVYS 89 (289)
Q Consensus 10 ~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~s 89 (289)
+++++++++|||||||.+++.+++++|+++|++++++||+||+|.++.+++....++..+ +..+++++++|
T Consensus 169 ~~~~~~~~~nP~NPTG~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~---------~~~~~vi~~~S 239 (409)
T PLN00143 169 ENTIAMVIINPGNPCGSVYSYEHLNKIAETARKLGILVIADEVYGHIVFGSKPFVPMGLF---------ASIVPVITLGS 239 (409)
T ss_pred cCCEEEEEECCCCCCCCccCHHHHHHHHHHHHHcCCeEEEEccccccccCCCCCcchhhh---------cccCcEEEEcc
Confidence 468899999999999999999999999999999999999999999987765443444444 23468999999
Q ss_pred CccccCCCCceEEEEEec-CHHHH------HHHHhccc-cCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHH
Q 044773 90 LSKDLGLPGFRVGAIYSN-DDTVV------AAATKMSS-FGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLV 161 (289)
Q Consensus 90 ~sK~~g~~G~r~G~i~~~-~~~~~------~~~~~~~~-~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~ 161 (289)
|||.|+++|+|+||++++ ++.+. ..+..... ...++.+.|.++..++.+.. ..++++.++.++++++.+.
T Consensus 240 fSK~f~~pGlRvG~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~q~a~~~~l~~~~--~~~~~~~~~~~~~~~~~~~ 317 (409)
T PLN00143 240 ISKRWMIPGWGLGWLVTCDPSGLLQICEIADSIKKALNPAPFPPTFIQAAIPEILEKTT--EDFFSKTINILRAALAFCY 317 (409)
T ss_pred chhhcCCCccceEEEEeeCchhhhhhHHHHHHHHHHHhccCCCCchHHHHHHHHHhcCh--HHHHHHHHHHHHHHHHHHH
Confidence 999999999999999994 33222 22222221 22257799999999997632 5567888888999999999
Q ss_pred HHHHhcCC-ce-ecCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEEecCCHHHHHH
Q 044773 162 SGLEKAGI-SC-LKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKL 239 (289)
Q Consensus 162 ~~l~~~g~-~~-~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ris~~~~~~e~l~~ 239 (289)
+.|.+++. .+ ..|++|+|+|++++..... ...+..+++..+++++||.+.||..|+. ++++||+++. +++++++
T Consensus 318 ~~L~~~~~~~~~~~p~gg~f~w~~l~~~~~~-~~~~~~~~~~~ll~~~gV~v~pg~~f~~--~~~iRi~~~~-~~~~l~~ 393 (409)
T PLN00143 318 DKLKEIPCIMCPQKAEGAFFALVKLNLLLLE-DIEDDMEFCLKLAKEESLIILPGVTVGL--KNWLRITFAV-EQSSLED 393 (409)
T ss_pred HHHhcCCCCCCCCCCCeeEEEEEecchhhcC-CCCCHHHHHHHHHHhCCEEEeCccccCC--CCeEEEEEcC-CHHHHHH
Confidence 99988743 32 4688999999999752100 0112346777787889999999999964 6899999994 7999999
Q ss_pred HHHHHHHHHHHHHH
Q 044773 240 SMQRLKAFVDSITT 253 (289)
Q Consensus 240 ~l~~l~~~l~~~~~ 253 (289)
++++|+++++....
T Consensus 394 al~rl~~~l~~~~~ 407 (409)
T PLN00143 394 GLGRLKSFCGRHAK 407 (409)
T ss_pred HHHHHHHHHHHhcc
Confidence 99999999876543
No 43
>PRK15481 transcriptional regulatory protein PtsJ; Provisional
Probab=100.00 E-value=8.3e-34 Score=261.78 Aligned_cols=220 Identities=21% Similarity=0.278 Sum_probs=179.0
Q ss_pred HHHhhhCCCccEEEEe-CCCCCCccCCCHHHHHHHHHHHHHc-CCEEEEecCCCCCccCCCCccChhhhhhccccccCCC
Q 044773 3 QLAQKRHLKVKGVLVT-NPSNPLGTTMSRNELNLLVNFITEK-NIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEV 80 (289)
Q Consensus 3 ~~~~~~~~~~~~i~l~-~p~NPtG~~~~~~~l~~l~~~~~~~-~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 80 (289)
++++. +++|+++++ |||||||.+++.+++++|+++|+++ +++||+||+|.++.+.+. .+.... .
T Consensus 205 ~~~~~--~~~k~i~~~p~p~NPTG~~~s~~~~~~l~~la~~~~~~~ii~De~Y~~~~~~~~--~~~~~~----------~ 270 (431)
T PRK15481 205 ERALA--QGARAVILTPRAHNPTGCSLSARRAAALRNLLARYPQVLVIIDDHFALLSSSPY--HSVIPQ----------T 270 (431)
T ss_pred HHHHh--cCCCEEEECCCCCCCCCccCCHHHHHHHHHHHHhcCCceEEecCchhhhccCCC--CCCCcC----------C
Confidence 44443 368888887 9999999999999999999999999 999999999998755322 222111 2
Q ss_pred CCceEEEecCccccCCCCceEEEEEecCHHHHHHHHhc-cc-cCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHH
Q 044773 81 WNRVHIVYSLSKDLGLPGFRVGAIYSNDDTVVAAATKM-SS-FGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHR 158 (289)
Q Consensus 81 ~~~~i~i~s~sK~~g~~G~r~G~i~~~~~~~~~~~~~~-~~-~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 158 (289)
.+++++++||||++| +|+|+||++++++. .+.+... .. ..++|.+.|.++..+|+++.+ .+++++.++.++++++
T Consensus 271 ~~~vi~~~SfSK~~~-~GlRiG~~i~~~~~-~~~~~~~~~~~~~~~s~~~q~a~~~~l~~~~~-~~~l~~~~~~~~~~r~ 347 (431)
T PRK15481 271 TQRWALIRSVSKALG-PDLRLAFVASDSAT-SARLRLRLNSGTQWVSHLLQDLVYACLTDPEY-QARLAQARLFYAQRRQ 347 (431)
T ss_pred CCCEEEEeeeccccC-CCceeEEEeCCHHH-HHHHHHHHhccccCCCHHHHHHHHHHHhCccH-HHHHHHHHHHHHHHHH
Confidence 368999999999999 99999999996544 4434332 22 234788999999999999877 8889999999999999
Q ss_pred HHHHHHHhcCCceecCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCC-CCCeEEEEEecCCHHHH
Q 044773 159 KLVSGLEKAGISCLKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCT-EPGWFRVCFANMSEDTL 237 (289)
Q Consensus 159 ~l~~~l~~~g~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~-~~~~~Ris~~~~~~e~l 237 (289)
.+.+.|++.|+.+..|++|+|+|++++.. ..+++..+. ++||.+.||..|+.. ..+++||+++..+++++
T Consensus 348 ~~~~~L~~~~~~~~~p~gg~f~~~~l~~~--------~~~~~~~l~-~~gV~v~pg~~f~~~~~~~~iRis~~~~~~~~i 418 (431)
T PRK15481 348 KLARALQQYGIAIPSPGDGLNLWLPLDTD--------SQATALTLA-KSGWLVREGEAFGVSAPSHGLRITLSTLNDAEI 418 (431)
T ss_pred HHHHHHHHcCCccccCCCeEEEEEECCCC--------HHHHHHHHH-HCCcEEecCCccccCCCCCeEEEEcCCCChHHH
Confidence 99999999888887899999999999741 135777765 679999999999753 24689999987789999
Q ss_pred HHHHHHHHHHH
Q 044773 238 KLSMQRLKAFV 248 (289)
Q Consensus 238 ~~~l~~l~~~l 248 (289)
++++++|++++
T Consensus 419 ~~~~~~l~~~~ 429 (431)
T PRK15481 419 NRLAADLHQAL 429 (431)
T ss_pred HHHHHHHHHHh
Confidence 99999998875
No 44
>PLN02656 tyrosine transaminase
Probab=100.00 E-value=2.9e-33 Score=256.45 Aligned_cols=228 Identities=22% Similarity=0.345 Sum_probs=182.1
Q ss_pred CCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEec
Q 044773 10 LKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVYS 89 (289)
Q Consensus 10 ~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~s 89 (289)
+++++++++|||||||.+++.+++++|+++|++++++||+||+|.++.+++....++..+ +..+++++++|
T Consensus 168 ~~~~~v~l~~P~NPtG~~~s~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~---------~~~~~vi~~~S 238 (409)
T PLN02656 168 QNTVALVIINPGNPCGNVYSYQHLKKIAETAEKLKILVIADEVYGHLAFGSNPFVPMGVF---------GSIVPVLTLGS 238 (409)
T ss_pred cCceEEEEECCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEehhhhhcccCCCCcccHHHh---------cccCcEEEEcc
Confidence 468899999999999999999999999999999999999999999988876544555444 24468999999
Q ss_pred CccccCCCCceEEEEEecC-------HHHHHHHHhccc-cCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHH
Q 044773 90 LSKDLGLPGFRVGAIYSND-------DTVVAAATKMSS-FGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLV 161 (289)
Q Consensus 90 ~sK~~g~~G~r~G~i~~~~-------~~~~~~~~~~~~-~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~ 161 (289)
|||.|+++|+|+||+++++ +.+.+.+..... ...++.+.|.++..++++.. +.++++.++.++++++.+.
T Consensus 239 fSK~f~~pGlRiG~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~q~a~~~~l~~~~--~~~~~~~~~~~~~~r~~~~ 316 (409)
T PLN02656 239 LSKRWIVPGWRLGWFVTTDPSGSFRDPKIVERIKKYFDILGGPATFIQAAVPTILEQTD--ESFFKKTINILKQSSDICC 316 (409)
T ss_pred cchhccCcceeEEEEEEeCcccccccHHHHHHHHHHHhhhcCCCHHHHHHHHHHHhcCc--HHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999953 345555444332 33467899999999998632 5678899999999999999
Q ss_pred HHHHhc-CCc-eecCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEEecCCHHHHHH
Q 044773 162 SGLEKA-GIS-CLKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKL 239 (289)
Q Consensus 162 ~~l~~~-g~~-~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ris~~~~~~e~l~~ 239 (289)
+.|+++ ++. +..|+||+|+|++++..... ...+..+++..+++++||.+.||+.|+. ++++||+++. +++++++
T Consensus 317 ~~L~~~~~~~~~~~p~gg~~~w~~l~~~~~~-~~~~~~~~~~~~l~~~gV~v~pg~~fg~--~~~iRi~~~~-~~e~l~e 392 (409)
T PLN02656 317 DRIKEIPCITCPHKPEGSMAVMVKLNLSLLE-DISDDIDFCFKLAREESVIILPGTAVGL--KNWLRITFAA-DPSSLEE 392 (409)
T ss_pred HHHhhCCCCcCCcCCCeEEEEEEecchhhcC-CCCCHHHHHHHHHHhCCEEEecchhcCC--CCeEEEEeCC-CHHHHHH
Confidence 999887 333 35789999999998642100 0011235666777789999999999974 6899999995 8999999
Q ss_pred HHHHHHHHHHHHH
Q 044773 240 SMQRLKAFVDSIT 252 (289)
Q Consensus 240 ~l~~l~~~l~~~~ 252 (289)
++++|+++++...
T Consensus 393 al~rl~~~~~~~~ 405 (409)
T PLN02656 393 ALGRIKSFYLRHS 405 (409)
T ss_pred HHHHHHHHHHHhc
Confidence 9999999887543
No 45
>PRK07324 transaminase; Validated
Probab=100.00 E-value=4.6e-33 Score=252.13 Aligned_cols=217 Identities=23% Similarity=0.335 Sum_probs=180.6
Q ss_pred CCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEec
Q 044773 10 LKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVYS 89 (289)
Q Consensus 10 ~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~s 89 (289)
+++|++++++||||||.+++.+++++|+++|+++|+++|+||+|.++.+++. ..++.+. .+++++++|
T Consensus 152 ~~~kli~i~~p~NPtG~~~~~~~l~~i~~~a~~~~~~ii~De~y~~l~~~~~-~~s~~~~-----------~~~~I~~~s 219 (373)
T PRK07324 152 PNTKLICINNANNPTGALMDRAYLEEIVEIARSVDAYVLSDEVYRPLDEDGS-TPSIADL-----------YEKGISTNS 219 (373)
T ss_pred CCCcEEEEeCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEccccccccCCC-CCChhhc-----------cCCEEEEec
Confidence 5789999999999999999999999999999999999999999998866432 3344332 357899999
Q ss_pred CccccCCCCceEEEEEecCHHHHHHHHhcccc--CCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 044773 90 LSKDLGLPGFRVGAIYSNDDTVVAAATKMSSF--GLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEKA 167 (289)
Q Consensus 90 ~sK~~g~~G~r~G~i~~~~~~~~~~~~~~~~~--~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 167 (289)
|||.+|++|+|+||++++ +.+.+.+...... .+.+.+.|.++..++... +.++++.++.++++++.+.+.|++.
T Consensus 220 ~SK~~~~~G~RiG~i~~~-~~li~~~~~~~~~~~~~~~~~~q~~a~~~l~~~---~~~l~~~~~~~~~~~~~l~~~l~~~ 295 (373)
T PRK07324 220 MSKTYSLPGIRVGWIAAN-EEVIDILRKYRDYTMICAGVFDDMLASLALEHR---DAILERNRKIVRTNLAILDEWVAKE 295 (373)
T ss_pred chhhcCCccceeEEEecC-HHHHHHHHHHhCcEEecCChHHHHHHHHHHcCH---HHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 999999999999999995 5566655554432 346778898888888753 6678889999999999999999887
Q ss_pred -CCceecCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEEecCCHHHHHHHHHHHHH
Q 044773 168 -GISCLKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKLSMQRLKA 246 (289)
Q Consensus 168 -g~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ris~~~~~~e~l~~~l~~l~~ 246 (289)
++.+..|++|++.|+.++...+ ..+++..+++++||.+.||..|+. ++++||+++. +++.+.+++++|++
T Consensus 296 ~~~~~~~p~gg~~~~i~~~~~~~------~~~~~~~ll~~~gv~v~pg~~F~~--~~~iRis~~~-~~~~l~~~l~rl~~ 366 (373)
T PRK07324 296 PRVSYVKPKAVSTSFVKLDVDMP------SEDFCLKLLKETGVLLVPGNRFDL--EGHVRIGYCC-DTETLKKGLKKLSE 366 (373)
T ss_pred CCceEECCCceEEEEEEeCCCCC------HHHHHHHHHHhcCEEEECccccCC--CCeEEEEecC-CHHHHHHHHHHHHH
Confidence 7888899999998888875322 257889988899999999999975 5799999985 79999999999999
Q ss_pred HHHHH
Q 044773 247 FVDSI 251 (289)
Q Consensus 247 ~l~~~ 251 (289)
++++.
T Consensus 367 ~l~~~ 371 (373)
T PRK07324 367 FLREF 371 (373)
T ss_pred HHHhc
Confidence 98753
No 46
>TIGR01265 tyr_nico_aTase tyrosine/nicotianamine aminotransferases. This subfamily of pyridoxal phosphate-dependent enzymes includes known examples of both tyrosine aminotransferase from animals and nicotianamine aminotransferase from barley.
Probab=100.00 E-value=4.8e-33 Score=254.56 Aligned_cols=226 Identities=24% Similarity=0.409 Sum_probs=183.7
Q ss_pred CCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEec
Q 044773 10 LKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVYS 89 (289)
Q Consensus 10 ~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~s 89 (289)
++++++++++||||||.+++.+++++|+++|+++|+++|+||+|.++.+++....++.++. ...++++++|
T Consensus 168 ~~~~~v~i~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~---------~~~~vi~~~S 238 (403)
T TIGR01265 168 EKTVAIVVINPSNPCGSVFSRDHLQKIAEVARKLGIPIIADEIYGHMVFGDAPFIPMASFA---------SIVPVLSLGG 238 (403)
T ss_pred cCccEEEEecCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEccccccccCCCCccchhhhc---------cCCcEEEEee
Confidence 4689999999999999999999999999999999999999999999887765555666662 3357999999
Q ss_pred CccccCCCCceEEEEEecC--HH----HHHHHHhccc-cCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHH
Q 044773 90 LSKDLGLPGFRVGAIYSND--DT----VVAAATKMSS-FGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVS 162 (289)
Q Consensus 90 ~sK~~g~~G~r~G~i~~~~--~~----~~~~~~~~~~-~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~ 162 (289)
|||.|++||+|+||+++++ +. +.+.+..... ...++.+.|.++..++.+.. +.++++.++.++++++.+.+
T Consensus 239 ~SK~~~~pGlRiG~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~--~~~~~~~~~~~~~~~~~l~~ 316 (403)
T TIGR01265 239 ISKRWVVPGWRLGWIIIHDPHGIFRDTVLQGLKNLLQRILGPATIVQGALPDILENTP--QEFFDGKISVLKSNAELCYE 316 (403)
T ss_pred cccccCCCcceEEEEEEeCchhhhHHHHHHHHHHHhhhhcCCChHHHHHHHHHHHhCh--HHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999853 22 2233333322 33478899999999997632 67889999999999999999
Q ss_pred HHHhc-CCceecCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEEecCCHHHHHHHH
Q 044773 163 GLEKA-GISCLKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKLSM 241 (289)
Q Consensus 163 ~l~~~-g~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ris~~~~~~e~l~~~l 241 (289)
.|+++ |+.+..|++|+|+|++++..... ...+..+++..+++++||.+.||..|+. ++++||+++. +++.+++++
T Consensus 317 ~L~~~~~~~~~~p~~g~f~~~~~~~~~~~-~~~~~~~~~~~l~~~~gv~v~pg~~f~~--~~~iRis~~~-~~~~l~~~l 392 (403)
T TIGR01265 317 ELKDIPGLVCPKPEGAMYLMVKLELELFP-EIKDDVDFCEKLVREESVICLPGSAFGL--PNWVRITITV-PESMLEEAC 392 (403)
T ss_pred HHhcCCCceecCCCceeEEEEeccccccC-CCCCHHHHHHHHHHhCCEEEeCccccCC--CCeEEEEecC-CHHHHHHHH
Confidence 99987 78777899999999998753210 0113356888888889999999999973 6899999995 788999999
Q ss_pred HHHHHHHHH
Q 044773 242 QRLKAFVDS 250 (289)
Q Consensus 242 ~~l~~~l~~ 250 (289)
++|++++++
T Consensus 393 ~~l~~~~~~ 401 (403)
T TIGR01265 393 SRIKEFCER 401 (403)
T ss_pred HHHHHHHHh
Confidence 999998865
No 47
>TIGR03538 DapC_gpp succinyldiaminopimelate transaminase. This family of succinyldiaminopimelate transaminases (DapC) includes the experimentally characterized enzyme from Bordatella pertussis. The majority of genes in this family are proximal to genes encoding components of the lysine biosynthesis via diaminopimelate pathway (GenProp0125).
Probab=100.00 E-value=3.2e-33 Score=254.97 Aligned_cols=220 Identities=19% Similarity=0.320 Sum_probs=173.2
Q ss_pred CCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCC-CccChhhhhhccccccCCCCCceEEEe
Q 044773 10 LKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSP-GFVSIMEILKDRNCENTEVWNRVHIVY 88 (289)
Q Consensus 10 ~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~-~~~~~~~~~~~~~~~~~d~~~~~i~i~ 88 (289)
.++|+|+++|||||||.+++.+++++|+++|++++++||+||+|..+.+++. ...+......+. +.+..+++++++
T Consensus 164 ~~~k~i~l~~p~NPtG~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~~---~~~~~~~vi~i~ 240 (393)
T TIGR03538 164 RRCQLLFVCSPGNPTGAVLSLDTLKKLIELADQYGFIIASDECYSELYFDEGNPPAGLLQAAAQL---GRDDFRRCLVFH 240 (393)
T ss_pred hcceEEEEeCCCCCcCcccCHHHHHHHHHHHHHCCEEEEECcchhhcccCCCCCCcCHHHhcccc---cccccccEEEEe
Confidence 3689999999999999999999999999999999999999999998876532 223322221110 002457899999
Q ss_pred cCccccCCCCceEEEEEecCHHHHHHHHhccc--cCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 044773 89 SLSKDLGLPGFRVGAIYSNDDTVVAAATKMSS--FGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEK 166 (289)
Q Consensus 89 s~sK~~g~~G~r~G~i~~~~~~~~~~~~~~~~--~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 166 (289)
||||.++++|+|+||++++++ +.+.+..... ...++++.|.++...+.. ++++++.++.++++++.+.+.|++
T Consensus 241 S~SK~~~~~GlRvG~~i~~~~-l~~~~~~~~~~~~~~~~~~~q~~~~~~l~~----~~~~~~~~~~~~~~~~~~~~~L~~ 315 (393)
T TIGR03538 241 SLSKRSNLPGLRSGFVAGDAE-ILKAFLRYRTYHGCAMPIPTQLASIAAWND----EQHVRENRALYREKFAAVLEILGQ 315 (393)
T ss_pred cchhhcCCcccceEEEecCHH-HHHHHHHHHHhhccCcCHHHHHHHHHHhcC----hHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999654 4444443332 233677888888777754 456888899999999999999987
Q ss_pred cCCceecCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCC------CCCCeEEEEEecCCHHHHHHH
Q 044773 167 AGISCLKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHC------TEPGWFRVCFANMSEDTLKLS 240 (289)
Q Consensus 167 ~g~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~------~~~~~~Ris~~~~~~e~l~~~ 240 (289)
. +.+..|++|+|+|++++ .+ ..+++..+++++||.+.||+.|+. .+.+++||+++. ++++++++
T Consensus 316 ~-~~~~~p~gg~f~~~~~~--~~------~~~~~~~l~~~~gV~v~pg~~f~~~~~~~~~~~~~~Ris~~~-~~~~l~~~ 385 (393)
T TIGR03538 316 V-LDLELPDAGFYLWPKVP--GD------DEAFARALYEEENVTVLPGRFLAREAEGVNPGEGRVRIALVA-PLEECVEA 385 (393)
T ss_pred h-CcccCCCeeEEEEEECC--CC------HHHHHHHHHHHCCEEEeCCccccccccCCCCCCCEEEEEecC-CHHHHHHH
Confidence 5 56678999999999987 11 246888888889999999999863 235799999985 78999999
Q ss_pred HHHHHHH
Q 044773 241 MQRLKAF 247 (289)
Q Consensus 241 l~~l~~~ 247 (289)
+++|+++
T Consensus 386 l~~l~~~ 392 (393)
T TIGR03538 386 AERIRSF 392 (393)
T ss_pred HHHHHHh
Confidence 9999875
No 48
>PRK09275 aspartate aminotransferase; Provisional
Probab=100.00 E-value=1.4e-33 Score=261.73 Aligned_cols=229 Identities=22% Similarity=0.362 Sum_probs=177.3
Q ss_pred CCCccEEEEeCCCCCCccCCCHHHHHHHHHHHHH--cCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEE
Q 044773 9 HLKVKGVLVTNPSNPLGTTMSRNELNLLVNFITE--KNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHI 86 (289)
Q Consensus 9 ~~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~--~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~ 86 (289)
++++|+|+++|||||||.+++.+++++|+++|++ ++++||+||+|..+.. .+.++.+. ..+++++
T Consensus 239 ~~~tkai~l~nP~NPTG~v~s~e~l~~I~~ia~~~~~~l~II~DEvY~~f~~---~~~s~~~~----------~~~~~I~ 305 (527)
T PRK09275 239 DPSIKALFLVNPSNPPSVAMSDESLEKIADIVNEKRPDLMIITDDVYGTFVD---DFRSLFAV----------LPYNTIL 305 (527)
T ss_pred CCCCCEEEEeCCcCCcCCCCCHHHHHHHHHHHHhcCCCcEEEECCCChhhcc---cccCHHHh----------CCCCEEE
Confidence 3689999999999999999999999999999965 5999999999998643 33454444 2368999
Q ss_pred EecCccccCCCCceEEEEEecCHHHHH-HH-----------------------------------Hhc--cccCCCChHH
Q 044773 87 VYSLSKDLGLPGFRVGAIYSNDDTVVA-AA-----------------------------------TKM--SSFGLVSSQT 128 (289)
Q Consensus 87 i~s~sK~~g~~G~r~G~i~~~~~~~~~-~~-----------------------------------~~~--~~~~~~~~~~ 128 (289)
++||||+||++|+|+||++++++.+.+ .+ ... ....+.+.+.
T Consensus 306 v~SfSK~f~mtG~RlG~i~~~~~~v~~~~i~~l~~~~~~~~~~ry~~~~~~p~~~~fidrlvad~~~v~~~~t~~~s~p~ 385 (527)
T PRK09275 306 VYSFSKYFGATGWRLGVIALHEDNVFDKLIAKLPEEKKKELDKRYSSLTTDPEKLKFIDRLVADSRQVALNHTAGLSTPQ 385 (527)
T ss_pred EeehhhhccCcHhHHhhhhcCchhHHHHHHHhccHHHHHHHHhhhhhccCCcchhhhHHHHHHHHHHHHHhhccCCCCHH
Confidence 999999999999999999998762211 11 111 2234466777
Q ss_pred HHHH-----HHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceecCCceEEEEEecCcccc---CCC-------h
Q 044773 129 QYLL-----SALLSDKKFAQNYISENKKRLKQRHRKLVSGLEKAGISCLKSNAGLFCWVDMRHLLS---SNT-------F 193 (289)
Q Consensus 129 q~~~-----~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~g~~~~i~~~~~~~---~~~-------~ 193 (289)
|.++ .+++... +.+.++.++.+++|++.+.+.|. .++...+|+|+||+|++++.... ... .
T Consensus 386 Q~a~al~~~~all~~~---~~~~~~~~~~~~~Rr~~l~~~Lg-~~~~~~~p~g~fY~~~di~~~~~~~~g~~f~~~l~~~ 461 (527)
T PRK09275 386 QVQMALFSLFALLDEE---DAYKKAMKDIIRRRYKALYEGLG-LPEPEDPNNAAYYTLIDLEEWAEKNYGKEFADYLKKN 461 (527)
T ss_pred HHHHHHHHHHHHHhCc---hHHHHHHHHHHHHHHHHHHHHcC-CCCcCCCCCeeEEEEEEhHHhhhhccCchhhhhhhcc
Confidence 7763 3445543 56788899999999999988883 23444679999999999975321 000 1
Q ss_pred hhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEEecCCHHHHHHHHHHHHHHHHHHHHhh
Q 044773 194 EAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKLSMQRLKAFVDSITTTL 255 (289)
Q Consensus 194 ~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ris~~~~~~e~l~~~l~~l~~~l~~~~~~~ 255 (289)
.+..+++..|++++||++.||..|+. +++++|||+++.+++++.++.++|.++++++....
T Consensus 462 ~~~~~f~~~Ll~e~gV~v~PG~~Fg~-~~~~vRis~a~~~~~~~~~~~~rl~~~l~~y~~~~ 522 (527)
T PRK09275 462 YSPVDLLFRLAEETGVVLLPGGGFGG-PEWSVRVSLANLNEEDYAKIGKAIRKLLDEYYEEY 522 (527)
T ss_pred CCHHHHHHHHHhcCCEEEeCchhhCC-CCCeEEEEEecCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 23468999999999999999999986 46789999997789999999999999999887644
No 49
>PRK09265 aminotransferase AlaT; Validated
Probab=100.00 E-value=6.1e-33 Score=254.02 Aligned_cols=229 Identities=20% Similarity=0.327 Sum_probs=177.5
Q ss_pred CCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEec
Q 044773 10 LKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVYS 89 (289)
Q Consensus 10 ~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~s 89 (289)
+++++|+++|||||||.+++.+++++|+++|+++|+++|+||+|.++.+++....++..+. ...++++++|
T Consensus 167 ~~~~~v~l~~P~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~---------~~~~vi~~~S 237 (404)
T PRK09265 167 PRTKAIVIINPNNPTGAVYSKELLEEIVEIARQHNLIIFADEIYDKILYDGAVHISIASLA---------PDLLCVTFNG 237 (404)
T ss_pred ccceEEEEECCCCCCCcCCCHHHHHHHHHHHHHCCCEEEEehhhhhccCCCCCcCCHHHcC---------CCceEEEEec
Confidence 4689999999999999999999999999999999999999999998877665555665552 2246899999
Q ss_pred CccccCCCCceEEEEEec-CHH----HHHHHHhcc-ccCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHH
Q 044773 90 LSKDLGLPGFRVGAIYSN-DDT----VVAAATKMS-SFGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSG 163 (289)
Q Consensus 90 ~sK~~g~~G~r~G~i~~~-~~~----~~~~~~~~~-~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~ 163 (289)
|||++|++|+|+||++++ +.. +.+.+.... ....+|.+.|.++..++...+....+++. .+.++++++.+.+.
T Consensus 238 ~SK~~~~pGlRiG~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~-~~~~~~~r~~~~~~ 316 (404)
T PRK09265 238 LSKAYRVAGFRVGWMVLSGPKKHAKGYIEGLDMLASMRLCANVPAQHAIQTALGGYQSINELILP-GGRLYEQRDRAWEL 316 (404)
T ss_pred chhhccCcccceEEEEEeCchHHHHHHHHHHHHHhccccCCCcHHHHHHHHHhcCchhHHHHHHH-HHHHHHHHHHHHHH
Confidence 999999999999999973 332 222222221 22347789999999999764432333333 34577788999999
Q ss_pred HHhc-CCceecCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEEecCCHHHHHHHHH
Q 044773 164 LEKA-GISCLKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKLSMQ 242 (289)
Q Consensus 164 l~~~-g~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ris~~~~~~e~l~~~l~ 242 (289)
|+++ |+++.+|++|+|+|++++..... ..+..+.+..++.++||.+.||..|+...++++||+++ .++++++++++
T Consensus 317 L~~~~~~~~~~p~~g~~l~~~~~~~~~~--~~~~~~~~~~~l~~~gv~v~pg~~F~~~~~~~~Ri~~~-~~~e~l~~~l~ 393 (404)
T PRK09265 317 LNAIPGVSCVKPKGALYAFPKLDPKVYP--IHDDEQFVLDLLLQEKVLLVQGTGFNWPEPDHFRIVTL-PRVDDLEEAIG 393 (404)
T ss_pred HhcCCCCcccCCCcceEEEEEecccccC--CCCHHHHHHHHHHhCCEEEECchhhCCCCCCeEEEEeC-CCHHHHHHHHH
Confidence 9887 88889999999999998753210 01123455566778899999999997666789999997 58999999999
Q ss_pred HHHHHHHHH
Q 044773 243 RLKAFVDSI 251 (289)
Q Consensus 243 ~l~~~l~~~ 251 (289)
+|+++++..
T Consensus 394 rl~~~l~~~ 402 (404)
T PRK09265 394 RIGRFLSGY 402 (404)
T ss_pred HHHHHHHHh
Confidence 999988754
No 50
>PRK06425 histidinol-phosphate aminotransferase; Validated
Probab=100.00 E-value=3.4e-33 Score=249.27 Aligned_cols=211 Identities=17% Similarity=0.271 Sum_probs=165.4
Q ss_pred CCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEec
Q 044773 10 LKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVYS 89 (289)
Q Consensus 10 ~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~s 89 (289)
.++|+|+++|||||||.+++.+++++|+++|++++++||+||+|.++.+++. .+...+.+ ..+++++++|
T Consensus 121 ~~~k~v~l~nP~NPTG~~~s~~~~~~l~~~a~~~~~~iI~DE~Y~~~~~~~~--~~~~~~~~--------~~~~vi~~~S 190 (332)
T PRK06425 121 YNFDLIFIVSPDNPLGNLISRDSLLTISEICRKKGALLFIDEAFIDFVPNRA--EEDVLLNR--------SYGNVIIGRS 190 (332)
T ss_pred cCCCEEEEeCCCCCcCCccCHHHHHHHHHHHHHcCCEEEEecchhccccccc--hhHHHHhc--------cCCCEEEEee
Confidence 3789999999999999999999999999999999999999999998865432 24444432 3478999999
Q ss_pred CccccCCCCceEEEEEecCHHHHHHHHhccccCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 044773 90 LSKDLGLPGFRVGAIYSNDDTVVAAATKMSSFGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEKAGI 169 (289)
Q Consensus 90 ~sK~~g~~G~r~G~i~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~ 169 (289)
|||++|++|+|+||+++++ .+.+.+......+..+.+.+ .++..... +.+.++.++.++++++++.+.|++.|+
T Consensus 191 fSK~~~l~GlRiGy~v~~~-~li~~l~~~~~~~~~~~~~~----~~l~~~~~-~~~~~~~~~~~~~~r~~l~~~L~~~g~ 264 (332)
T PRK06425 191 LTKILGIPSLRIGYIATDD-YNMKISRKITEPWSVCDPAI----DFIRSIDL-DYVAKHSLDIMENERSYLINNLEAMGF 264 (332)
T ss_pred cHHhcCCchhhheeeecCH-HHHHHHHHcCCCCccCHHHH----HHHHHhhh-HHHHHHHHHHHHHHHHHHHHHHHHCCC
Confidence 9999999999999999965 45555555444443443332 23333333 556778899999999999999999888
Q ss_pred ceecCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEEecCCHHHHHHHHHHHHHHH
Q 044773 170 SCLKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKLSMQRLKAFV 248 (289)
Q Consensus 170 ~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ris~~~~~~e~l~~~l~~l~~~l 248 (289)
.+..+.+|.|+|++++ +. .++++.++ ++||.+.||..|+..+++++||+++ ++++.+.++++|++++
T Consensus 265 ~~~~~~~g~f~~~~~~---~~------~~~~~~l~-~~gi~v~~~~~f~~~~~~~iRis~~--~~~~~~~l~~al~~~~ 331 (332)
T PRK06425 265 RAAGDPSANFITFMIP---DA------HDFYSYLL-KNGILVRLLDDYECLGEQYIRIAIR--RRSFNIKLVNALRNFL 331 (332)
T ss_pred EECCCCCceEEEEEcC---CH------HHHHHHHH-HCCeEEEECCCCCCCCCCEEEEEeC--CHHHHHHHHHHHHHHh
Confidence 8765556778999876 11 45777777 5699999999997655689999998 4789999999988764
No 51
>PRK07568 aspartate aminotransferase; Provisional
Probab=100.00 E-value=5.9e-33 Score=253.56 Aligned_cols=224 Identities=26% Similarity=0.418 Sum_probs=184.2
Q ss_pred CCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEec
Q 044773 10 LKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVYS 89 (289)
Q Consensus 10 ~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~s 89 (289)
+++++|+++|||||||.+++.+++++|+++|+++++++|+||+|.++.+++....++.++.+ ..+++++++|
T Consensus 161 ~~~~~v~i~~p~NPtG~~~~~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~s~~~~~~--------~~~~~i~~~S 232 (397)
T PRK07568 161 PKTKAILISNPGNPTGVVYTKEELEMLAEIAKKHDLFLISDEVYREFVYDGLKYTSALSLEG--------LEDRVIIIDS 232 (397)
T ss_pred ccceEEEEECCCCCCCccCCHHHHHHHHHHHHHCCcEEEEeccchhcccCCCCccChhhcCC--------CcCCEEEEec
Confidence 47899999999999999999999999999999999999999999998776655556555521 3578999999
Q ss_pred CccccCCCCceEEEEEecCHHHHHHHHhc-cccCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHhc-
Q 044773 90 LSKDLGLPGFRVGAIYSNDDTVVAAATKM-SSFGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEKA- 167 (289)
Q Consensus 90 ~sK~~g~~G~r~G~i~~~~~~~~~~~~~~-~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~- 167 (289)
|||.+|++|+|+||++++++.+.+.+... ....+.+.+.|.++..++... +.++++.++.++++++.+.+.|+++
T Consensus 233 ~SK~~~~~G~R~G~~~~~~~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~---~~~~~~~~~~~~~~~~~l~~~L~~~~ 309 (397)
T PRK07568 233 VSKRYSACGARIGCLISKNKELIAAAMKLCQARLSPPTLEQIGAAALLDTP---ESYFDEVREEYKKRRDILYEELNKIP 309 (397)
T ss_pred chhhccCCCcceEEEecCCHHHHHHHHHHhhccCCCCcHHHHHHHHHhhCC---HHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 99999999999999999765555544332 222447889999999999864 5678889999999999999999887
Q ss_pred CCceecCCceEEEEEecCccccCCChhhHHHHHHHHHHh-----cCeEEeCCCCCCCC---CCCeEEEEEecCCHHHHHH
Q 044773 168 GISCLKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYD-----VKLNISPGSSCHCT---EPGWFRVCFANMSEDTLKL 239 (289)
Q Consensus 168 g~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~-----~gi~v~pg~~f~~~---~~~~~Ris~~~~~~e~l~~ 239 (289)
++.+..|+||+|+|++++.. +..+++..++++ +||.+.||..|+.. +++++||+++. +++++++
T Consensus 310 ~~~~~~p~g~~~~~~~l~~~-------~~~~~~~~l~~~~~~~~~gv~v~pg~~f~~~~~~~~~~iRls~~~-~~~~~~~ 381 (397)
T PRK07568 310 GVVCEKPKGAFYIIAKLPVD-------DAEDFAKWLLTDFNYNGETVMVAPASGFYATPGLGKNEIRIAYVL-NEEDLKR 381 (397)
T ss_pred CceecCCCcceEEEEecCCC-------CHHHHHHHHHhhcccccceEEEeCchHhcCCCCCCCCeEEEEEeC-CHHHHHH
Confidence 78888899999999998742 124577777754 69999999998532 34799999984 7899999
Q ss_pred HHHHHHHHHHHHH
Q 044773 240 SMQRLKAFVDSIT 252 (289)
Q Consensus 240 ~l~~l~~~l~~~~ 252 (289)
++++|.+++++..
T Consensus 382 ~~~~l~~~l~~~~ 394 (397)
T PRK07568 382 AMEILKEALEKYN 394 (397)
T ss_pred HHHHHHHHHHHhh
Confidence 9999999987654
No 52
>PRK07777 aminotransferase; Validated
Probab=100.00 E-value=4.7e-33 Score=253.41 Aligned_cols=222 Identities=21% Similarity=0.352 Sum_probs=179.7
Q ss_pred CCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEec
Q 044773 10 LKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVYS 89 (289)
Q Consensus 10 ~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~s 89 (289)
+++++|+++|||||||.+++.+++++|+++|+++++++|+||+|.++.+.+....++.++. +..+++++++|
T Consensus 158 ~~~~~v~l~~p~NPtG~~~~~~~~~~l~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~--------~~~~~~i~~~S 229 (387)
T PRK07777 158 PRTRALIVNSPHNPTGTVLTAAELAAIAELAVEHDLLVITDEVYEHLVFDGARHLPLATLP--------GMRERTVTISS 229 (387)
T ss_pred cccEEEEEcCCCCCCCccCCHHHHHHHHHHHHhcCcEEEEeccchhcccCCCCcccHhhCC--------CCcCcEEEEee
Confidence 4689999999999999999999999999999999999999999998877654444444431 13578999999
Q ss_pred CccccCCCCceEEEEEecCHHHHHHHHhccc--cCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 044773 90 LSKDLGLPGFRVGAIYSNDDTVVAAATKMSS--FGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEKA 167 (289)
Q Consensus 90 ~sK~~g~~G~r~G~i~~~~~~~~~~~~~~~~--~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 167 (289)
|||.||++|+|+||++++++ +.+.+..... ....+++.|.++..++... +.++++.++.++++++.+.+.|++.
T Consensus 230 ~SK~~g~~GlRiG~~~~~~~-l~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~---~~~~~~~~~~~~~~~~~l~~~L~~~ 305 (387)
T PRK07777 230 AAKTFNVTGWKIGWACGPAP-LIAAVRAAKQYLTYVGGAPFQPAVAHALDHE---DAWVAALRDSLQAKRDRLAAGLAEA 305 (387)
T ss_pred chhhccCcCceeEEEecCHH-HHHHHHHHHhhcccCCCCHHHHHHHHHHhCC---cHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 99999999999999999654 4444443332 2336778888888888764 4567888899999999999999998
Q ss_pred CCceecCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCC---CCCeEEEEEecCCHHHHHHHHHHH
Q 044773 168 GISCLKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCT---EPGWFRVCFANMSEDTLKLSMQRL 244 (289)
Q Consensus 168 g~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~---~~~~~Ris~~~~~~e~l~~~l~~l 244 (289)
++++.++++|+|+|++++.... .+..+++..|++++||.+.||..|+.. .++++||+++. +++++++++++|
T Consensus 306 ~~~~~~~~g~~~~~~~~~~~~~----~~~~~~~~~l~~~~gv~v~pg~~f~~~~~~~~~~~Ri~~~~-~~~~l~~~l~~l 380 (387)
T PRK07777 306 GFEVHDSAGTYFLCADPRPLGY----DDGTEFCRALPERVGVAAIPMSVFYDPADAWNHLVRFAFCK-RDDTLDEAIRRL 380 (387)
T ss_pred CCCccCCCcceEEEecccccCC----CCHHHHHHHHHHhCCEEEeCchHhCCCCcCCCCeEEEEecC-CHHHHHHHHHHH
Confidence 9898999999999998763111 123578999988899999999988742 25689999986 899999999999
Q ss_pred HHHH
Q 044773 245 KAFV 248 (289)
Q Consensus 245 ~~~l 248 (289)
+++.
T Consensus 381 ~~~~ 384 (387)
T PRK07777 381 RALR 384 (387)
T ss_pred HHHh
Confidence 8754
No 53
>PRK08960 hypothetical protein; Provisional
Probab=100.00 E-value=6e-33 Score=252.74 Aligned_cols=219 Identities=21% Similarity=0.369 Sum_probs=177.7
Q ss_pred CCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEec
Q 044773 10 LKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVYS 89 (289)
Q Consensus 10 ~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~s 89 (289)
++++++++++||||||.+++.+++++|+++|+++++++|+||+|.++.+++ ...++.. ..+++++++|
T Consensus 164 ~~~~~i~i~~p~NPtG~~~~~~~~~~l~~~~~~~~~~li~De~Y~~~~~~~-~~~~~~~-----------~~~~vi~~~S 231 (387)
T PRK08960 164 ADTVGALVASPANPTGTLLSRDELAALSQALRARGGHLVVDEIYHGLTYGV-DAASVLE-----------VDDDAFVLNS 231 (387)
T ss_pred ccceEEEEECCCCCCCcCcCHHHHHHHHHHHHHcCCEEEEEccccccccCC-CCCChhh-----------ccCCEEEEee
Confidence 457889999999999999999999999999999999999999999876643 2334332 2357899999
Q ss_pred CccccCCCCceEEEEEecCHHHHHHHHhccc--cCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 044773 90 LSKDLGLPGFRVGAIYSNDDTVVAAATKMSS--FGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEKA 167 (289)
Q Consensus 90 ~sK~~g~~G~r~G~i~~~~~~~~~~~~~~~~--~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 167 (289)
|||.+|++|+|+||++++++ +.+.+..... ..++|.+.|.++..++.+. . ..++++.++.++++++.+.+.|+++
T Consensus 232 ~SK~~g~~GlRiG~~~~~~~-~~~~~~~~~~~~~~~~s~~~q~a~~~~l~~~-~-~~~l~~~~~~~~~~~~~l~~~L~~~ 308 (387)
T PRK08960 232 FSKYFGMTGWRLGWLVAPPA-AVPELEKLAQNLYISASTPAQHAALACFEPE-T-LAILEARRAEFARRRDFLLPALREL 308 (387)
T ss_pred cccccCCcccEEEEEEcCHH-HHHHHHHHHhhhccCCCHHHHHHHHHHhhcC-c-HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999654 4444444332 2346789999988888753 3 6788999999999999999999988
Q ss_pred CCce-ecCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCC-CCCeEEEEEecCCHHHHHHHHHHHH
Q 044773 168 GISC-LKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCT-EPGWFRVCFANMSEDTLKLSMQRLK 245 (289)
Q Consensus 168 g~~~-~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~-~~~~~Ris~~~~~~e~l~~~l~~l~ 245 (289)
|+.+ ..|++|+|+|+++++.. .+..+++..+++++||.+.||+.|+.. ..+++||+++. +.+++.+++++|+
T Consensus 309 ~~~~~~~p~g~~f~~~~~~~~~-----~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~iRi~~~~-~~~~l~~al~~l~ 382 (387)
T PRK08960 309 GFGIAVEPQGAFYLYADISAFG-----GDAFAFCRHFLETEHVAFTPGLDFGRHQAGQHVRFAYTQ-SLPRLQEAVERIA 382 (387)
T ss_pred CCcCCcCCCeeEEEEEeccccC-----CCHHHHHHHHHHhCCEEEcCchHhCCCCCCCeEEEEecC-CHHHHHHHHHHHH
Confidence 8765 46889999999997521 112468888888889999999999763 35799999995 7899999999998
Q ss_pred HHHH
Q 044773 246 AFVD 249 (289)
Q Consensus 246 ~~l~ 249 (289)
++++
T Consensus 383 ~~~~ 386 (387)
T PRK08960 383 RGLR 386 (387)
T ss_pred HHHh
Confidence 8764
No 54
>PRK08363 alanine aminotransferase; Validated
Probab=100.00 E-value=8e-33 Score=252.78 Aligned_cols=224 Identities=23% Similarity=0.335 Sum_probs=179.7
Q ss_pred CCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEec
Q 044773 10 LKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVYS 89 (289)
Q Consensus 10 ~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~s 89 (289)
+++++++++|||||||.+++.+++++|+++|+++++++|+||+|.++.+.+. ..++..+ +...++++++|
T Consensus 165 ~~~~~v~l~~p~NPtG~~~~~~~~~~l~~~a~~~~~~li~Deay~~~~~~~~-~~~~~~~---------~~~~~vi~~~S 234 (398)
T PRK08363 165 EKTKAIAVINPNNPTGALYEKKTLKEILDIAGEHDLPVISDEIYDLMTYEGK-HVSPGSL---------TKDVPVIVMNG 234 (398)
T ss_pred cceEEEEEECCCCCCCcCcCHHHHHHHHHHHHHcCeEEEEhhhhhhhccCCc-ccCHHHc---------CcCCcEEEEec
Confidence 4689999999999999999999999999999999999999999998877543 3344444 23457999999
Q ss_pred CccccCCCCceEEEEEe--cCHHHHHHHHhcc----ccCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHH
Q 044773 90 LSKDLGLPGFRVGAIYS--NDDTVVAAATKMS----SFGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSG 163 (289)
Q Consensus 90 ~sK~~g~~G~r~G~i~~--~~~~~~~~~~~~~----~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~ 163 (289)
|||.++++|+|+||+++ +++.+........ .....|.+.|.++..++.+. .+++++.++.++++++.+.+.
T Consensus 235 fSK~~~~~GlRiG~~~~~~~~~~~~~l~~~~~~~~~~~~~~s~~~q~~~~~~l~~~---~~~l~~~~~~~~~~~~~l~~~ 311 (398)
T PRK08363 235 LSKVYFATGWRLGYIYFVDPEGKLAEVREAIDKLARIRLCPNTPAQFAAIAGLTGP---MDYLEEYMKKLKERRDYIYKR 311 (398)
T ss_pred chhccCCccceEEEEEEeCcHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHhCC---hHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999998 4433333222211 12347889999999998753 667888899999999999999
Q ss_pred HHhc-CCceecCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEEecCCHHHHHHHHH
Q 044773 164 LEKA-GISCLKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKLSMQ 242 (289)
Q Consensus 164 l~~~-g~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ris~~~~~~e~l~~~l~ 242 (289)
|.++ ++.+..|++|+|+|++++.... .+..+++..+++++||.+.||..|+..+++++||+++ .++++++++++
T Consensus 312 L~~~~~~~~~~p~g~~~~~~~l~~~~~----~~~~~~~~~~l~~~gV~v~~g~~f~~~~~~~iRis~~-~~~~~l~~~l~ 386 (398)
T PRK08363 312 LNEIPGISTTKPQGAFYIFPRIEEGPW----KDDKEFVLDVLHEAHVLFVHGSGFGEYGAGHFRLVFL-PPVEILEEAMD 386 (398)
T ss_pred HhcCCCCEecCCCeEEEEEEEeccCCC----CCHHHHHHHHHHhCCEEEeCchhhCCCCCCeEEEEec-CCHHHHHHHHH
Confidence 9887 7888889999999998875211 0124566677778999999999998666789999998 48899999999
Q ss_pred HHHHHHHHH
Q 044773 243 RLKAFVDSI 251 (289)
Q Consensus 243 ~l~~~l~~~ 251 (289)
+|++++.+.
T Consensus 387 ~l~~~~~~~ 395 (398)
T PRK08363 387 RFEEFMRER 395 (398)
T ss_pred HHHHHHHHh
Confidence 999988663
No 55
>PF00155 Aminotran_1_2: Aminotransferase class I and II 1-aminocyclopropane-1-carboxylate synthase signature aspartate aminotransferase signature; InterPro: IPR004839 Aminotransferases share certain mechanistic features with other pyridoxal-phosphate dependent enzymes, such as the covalent binding of the pyridoxal-phosphate group to a lysine residue. On the basis of sequence similarity, these various enzymes can be grouped [] into class I and class II. This entry includes proteins from both subfamilies.; GO: 0016769 transferase activity, transferring nitrogenous groups, 0030170 pyridoxal phosphate binding, 0009058 biosynthetic process; PDB: 3NRA_B 3P6K_B 3OP7_A 3ASB_A 3ASA_A 1W7M_A 3FVX_A 1W7N_A 3FVU_B 3FVS_A ....
Probab=100.00 E-value=1.5e-33 Score=254.42 Aligned_cols=216 Identities=35% Similarity=0.578 Sum_probs=181.9
Q ss_pred CccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEecC
Q 044773 11 KVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVYSL 90 (289)
Q Consensus 11 ~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~s~ 90 (289)
+++++++++||||||.+++.+++++|+++|+++++++|+||+|.++.++...+.+....+ +...++++++||
T Consensus 148 ~~~~v~~~~p~nPtG~~~~~~~l~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~--------~~~~~vi~~~S~ 219 (363)
T PF00155_consen 148 RPKAVLICNPNNPTGSVLSLEELRELAELAREYNIIIIVDEAYSDLIFGDPDFGPIRSLL--------DEDDNVIVVGSL 219 (363)
T ss_dssp TEEEEEEESSBTTTTBB--HHHHHHHHHHHHHTTSEEEEEETTTTGBSSSSHTHHHHGHH--------TTTSTEEEEEES
T ss_pred ccceeeecccccccccccccccccchhhhhcccccceeeeeceeccccCCCccCcccccc--------cccccceeeeec
Confidence 578999999999999999999999999999999999999999999877644332222222 234559999999
Q ss_pred ccccCCCCceEEEEEecCHHHHHHHHhccccCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Q 044773 91 SKDLGLPGFRVGAIYSNDDTVVAAATKMSSFGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEKAGIS 170 (289)
Q Consensus 91 sK~~g~~G~r~G~i~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~ 170 (289)
||.+|++|+|+||+++ ++.+.+.+......+..+++.|.++..++.+.....+++++.++.++++++++.+.|++.|+.
T Consensus 220 SK~~g~~GlRvG~i~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~~~~ 298 (363)
T PF00155_consen 220 SKSFGLPGLRVGYIVA-PPELIERLRRFQRSGLSSSPMQAAAAAALSDPELVEKWLEELRERLRENRDLLREALEEIGIT 298 (363)
T ss_dssp TTTTTSGGGTEEEEEE-EHHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSE
T ss_pred cccccccccccccccc-hhhhhhhhhhccccccccchhhHHHHHhhhcccccccccccchhhHHHHHHHHHHHHHHhhhh
Confidence 9999999999999999 566666666665555458899999999998876445689999999999999999999999999
Q ss_pred eecCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEEecCCHHHHHHHHHHH
Q 044773 171 CLKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKLSMQRL 244 (289)
Q Consensus 171 ~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ris~~~~~~e~l~~~l~~l 244 (289)
+.++++|+++|+.+... +..++++.|++++||.+.||..|+. ++++||+++..+++++++++++|
T Consensus 299 ~~~~~~~~~~~~~~~~~-------~~~~l~~~L~~~~gi~v~pg~~~~~--~~~iRi~~a~~~~e~~~~~~~~l 363 (363)
T PF00155_consen 299 VLPPEAGFFLWVRLDPN-------DAEELAQELLEEYGILVRPGSYFGV--PGYIRISLASHSEEDLEEALERL 363 (363)
T ss_dssp EEHHSBSSEEEEEESHH-------HHHHHHHHHHHHHTEEEEEGGGGTS--TTEEEEEGGCSCHHHHHHHHHHH
T ss_pred eeeccCccEEEEEcccc-------hHHHHHHHHHHhCCEEEEecCCCCC--CCEEEEEeccCCHHHHHHHHhhC
Confidence 99999999999998864 3357999999888999999999987 88999999557999999999986
No 56
>PRK06290 aspartate aminotransferase; Provisional
Probab=100.00 E-value=7.9e-33 Score=253.18 Aligned_cols=224 Identities=18% Similarity=0.244 Sum_probs=178.7
Q ss_pred CCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEec
Q 044773 10 LKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVYS 89 (289)
Q Consensus 10 ~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~s 89 (289)
.++|+|+++|||||||.+++.+++++|+++|++++++||+||+|.++.+++ ...++.++. +..+++++++|
T Consensus 178 ~~~k~i~l~nP~NPTG~v~s~e~l~~l~~la~~~~~~iI~DEaY~~~~~~~-~~~s~~~~~--------~~~~~~I~i~S 248 (410)
T PRK06290 178 EKAKLLYLNYPNNPTGAVATKEFYEEVVDFAKENNIIVVQDAAYAALTFDG-KPLSFLSVP--------GAKEVGVEIHS 248 (410)
T ss_pred ccceEEEEECCCCCCCcCCCHHHHHHHHHHHHHcCeEEEEecchhhceeCC-CCcChhcCC--------CccccEEEEee
Confidence 368999999999999999999999999999999999999999999887654 334554442 13467899999
Q ss_pred CccccCCCCceEEEEEecCHHHHHHHHhcccc--CCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 044773 90 LSKDLGLPGFRVGAIYSNDDTVVAAATKMSSF--GLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEKA 167 (289)
Q Consensus 90 ~sK~~g~~G~r~G~i~~~~~~~~~~~~~~~~~--~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 167 (289)
|||.+|++|+|+||++++++ +.+.+...... .+.+.+.|.++..++.+.. ++++.++.++++++.+.+.|++.
T Consensus 249 fSK~~g~~GlRiG~ii~~~~-l~~~l~~~~~~~~~~~~~~~q~aa~~~l~~~~----~~~~~~~~~~~~~~~l~~~L~~~ 323 (410)
T PRK06290 249 LSKAYNMTGWRLAFVVGNEL-IVKAFATVKDNNDSGQFIAIQKAGIYALDHPE----ITEKIREKYSRRLDKLVKILNEV 323 (410)
T ss_pred chhhcCCchhheEeEEeCHH-HHHHHHHHHhccccCCcHHHHHHHHHHhhCcH----HHHHHHHHHHHHHHHHHHHHHhC
Confidence 99999999999999999654 44444443332 2244588999999998754 46788899999999999999999
Q ss_pred CCceecCCceEEEEEecCccccCC-ChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEEec--CCHHHHHHHHHHH
Q 044773 168 GISCLKSNAGLFCWVDMRHLLSSN-TFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFAN--MSEDTLKLSMQRL 244 (289)
Q Consensus 168 g~~~~~~~~g~~~~i~~~~~~~~~-~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ris~~~--~~~e~l~~~l~~l 244 (289)
|+.+.+|++|+|+|++++...... ...+..+++..|+++.++.+.||..|+ +++||+++. .++++.++.++.|
T Consensus 324 g~~~~~p~g~f~l~v~lp~~~~~~~~~~~~~~~~~~Ll~~~~v~~~p~~~~~----~~lRi~~~~~~~~~~~~~~~~~~l 399 (410)
T PRK06290 324 GFKAEMPGGTFYLYVKAPKGTKSGIKFENAEEFSQYLIKEKLISTVPWDDAG----HFLRFSVTFEAKDEEEEDRILEEI 399 (410)
T ss_pred CCeecCCCeeeEEEEECCCccccCCCCCCHHHHHHHHHHhCCEEEECCcccc----CeEEEEEEcccccccchhHHHHHH
Confidence 999899999999999998643210 012345799999988888889988764 599999974 3778899999999
Q ss_pred HHHHHHH
Q 044773 245 KAFVDSI 251 (289)
Q Consensus 245 ~~~l~~~ 251 (289)
++.|...
T Consensus 400 ~~~~~~~ 406 (410)
T PRK06290 400 KRRLSDV 406 (410)
T ss_pred HHHHhhc
Confidence 8887654
No 57
>TIGR03801 asp_4_decarbox aspartate 4-decarboxylase. This enzyme, aspartate 4-decarboxylase (EC 4.1.1.12), removes the side-chain carboxylate from L-aspartate, converting it to L-alanine plus carbon dioxide. It is a PLP-dependent enzyme, homologous to aspartate aminotransferase (EC 2.6.1.1).
Probab=100.00 E-value=4.7e-33 Score=257.96 Aligned_cols=227 Identities=21% Similarity=0.339 Sum_probs=174.1
Q ss_pred CCCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHc--CCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEE
Q 044773 9 HLKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEK--NIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHI 86 (289)
Q Consensus 9 ~~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~--~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~ 86 (289)
++++|+|+++|||||||.+++.+++++|+++|+++ +++||+||+|..+.. .+.++.+. ..+++++
T Consensus 238 ~~~~kai~l~nP~NPTG~vls~e~l~~I~~ia~~~~~~l~II~DEvY~~f~~---~~~sl~~~----------~~~~vI~ 304 (521)
T TIGR03801 238 DPSIKALFVVNPSNPPSVAMSDESIEKIVDIVANDRPDLMILTDDVYGTFVD---DFRSLFAE----------LPYNTIG 304 (521)
T ss_pred CCCCcEEEEeCCCCCCCCCCCHHHHHHHHHHHHhcCCCeEEEECCCchhhcc---cccchhhh----------CCCCEEE
Confidence 35899999999999999999999999999999986 999999999998643 33454444 2368999
Q ss_pred EecCccccCCCCceEEEEEecCHHHHHH------------H------------------------Hhc--cccCCCChHH
Q 044773 87 VYSLSKDLGLPGFRVGAIYSNDDTVVAA------------A------------------------TKM--SSFGLVSSQT 128 (289)
Q Consensus 87 i~s~sK~~g~~G~r~G~i~~~~~~~~~~------------~------------------------~~~--~~~~~~~~~~ 128 (289)
++||||+||++|+|+||++++++.+.+. + ... ....+.+.+.
T Consensus 305 v~SfSK~fg~~G~RlG~i~~~~~~v~d~li~~lp~~~~~~l~~ry~~~~~~p~~~~fidr~vadsr~v~~~~~~g~s~p~ 384 (521)
T TIGR03801 305 VYSFSKYFGATGWRLGTIALHKDNIFDKLIAELPEEKKKELDKRYSSLTTEPRKLKFIDRLVADSRQVALNHTAGLSTPQ 384 (521)
T ss_pred EEcchhhccCchhhhhhhhcCchHHHHHHHHhccHHHHHHHhhhhccccCChhhhhhHHHHHHHHHHHHHhccCCCCcHH
Confidence 9999999999999999999976532110 1 111 1223355666
Q ss_pred HH--H---HHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceecCCceEEEEEecCccccC---CC-------h
Q 044773 129 QY--L---LSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEKAGISCLKSNAGLFCWVDMRHLLSS---NT-------F 193 (289)
Q Consensus 129 q~--~---~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~g~~~~i~~~~~~~~---~~-------~ 193 (289)
|. + +.+++... +.+.++.++.+++|++.+.+.|. ..+...+++|+||+|++++..... .. .
T Consensus 385 Q~q~al~a~~all~~~---~~y~~~~~~~~~~R~~~l~~~Lg-~~~~~~~~~g~~Y~~~di~~~~~~~~~~~f~~~l~~~ 460 (521)
T TIGR03801 385 QVQMALFSLFALMDKE---NAYKAETKDICRRREKLLFRGLG-LPLQEDPNDVAYYTLIDLEEWAEKNYGEEFSSYLKKN 460 (521)
T ss_pred HHHHHHHHHHHHhccc---hhHHHHHHHHHHHHHHHHHHhcC-CCCcCCCCCeEEEEEeehHHHHHHhcchHHHHHHhcc
Confidence 65 3 44455432 56788899999999999999882 223346789999999999853210 00 0
Q ss_pred hhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEEecCCHHHHHHHHHHHHHHHHHHHH
Q 044773 194 EAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKLSMQRLKAFVDSITT 253 (289)
Q Consensus 194 ~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ris~~~~~~e~l~~~l~~l~~~l~~~~~ 253 (289)
.+..+++..|++++||.+.||..|+. +++++|||+++.+++++.++.++|.++++++..
T Consensus 461 ~~~~~~~~~L~~e~gV~v~PG~~Fg~-~~~~vRisla~l~~~~~~~~~~rl~~~~~~~~~ 519 (521)
T TIGR03801 461 YSPVDVLFRLAEETGIVLLPGGGFGG-PEWSVRVSLANLNEYDYAEIGRAIRKILDEYYE 519 (521)
T ss_pred CCHHHHHHHHHHhCCEEEeCchhcCC-CCCeEEEEecCCCHHHHHHHHHHHHHHHHHHHH
Confidence 13468999999999999999999986 467899999877999999999999999987754
No 58
>TIGR03537 DapC succinyldiaminopimelate transaminase. Note: the detailed information included in the EC:2.6.1.17 record includes the assertions that the enzyme uses the pyridoxal pyrophosphate cofactor, which is consistent with the pfam00155 family, and the assertion that the amino group donor is L-glutamate, which is undetermined for the sequences in this clade.
Probab=100.00 E-value=1.1e-32 Score=247.64 Aligned_cols=213 Identities=23% Similarity=0.364 Sum_probs=172.1
Q ss_pred CCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEec
Q 044773 10 LKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVYS 89 (289)
Q Consensus 10 ~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~s 89 (289)
+++|++++++||||||.+++.+++++|+++|+++|+++|+||+|..+.++. ...++... ..+++++++|
T Consensus 135 ~~~~~i~i~~p~NPtG~~~~~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~-~~~~~~~~----------~~~~~i~~~s 203 (350)
T TIGR03537 135 EETKIVWINYPHNPTGATAPRSYLKETIAMCREHGIILCSDECYTEIYFGE-PPHSALEV----------GIENVLAFHS 203 (350)
T ss_pred hccEEEEEeCCCCCcCcccCHHHHHHHHHHHHHcCcEEEEeccccccccCC-CCCchhhc----------CcCCEEEEee
Confidence 368999999999999999999999999999999999999999999875543 33344433 2368999999
Q ss_pred CccccCCCCceEEEEEecCHHHHHHHHhcccc-C-CCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 044773 90 LSKDLGLPGFRVGAIYSNDDTVVAAATKMSSF-G-LVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEKA 167 (289)
Q Consensus 90 ~sK~~g~~G~r~G~i~~~~~~~~~~~~~~~~~-~-~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 167 (289)
|||.+|++|+|+||++++ +.+.+.+...... . ..+++.|.++..++.. +.++++.++.++++++.+.+.|++.
T Consensus 204 ~SK~~g~~GlRiG~~~~~-~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~----~~~~~~~r~~l~~~~~~~~~~l~~~ 278 (350)
T TIGR03537 204 LSKRSGMTGYRSGFVAGD-EKLISFLRKLRANFGVASPDFVQAAAKAAWSD----DNHVLERRKIFKRKRDLFIEFFNKV 278 (350)
T ss_pred cccccCCccccceeeecC-HHHHHHHHHHHHhhccCCCHHHHHHHHHHhCC----cHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 999999999999999985 4555555444322 2 2344677777676665 3456778899999999999999998
Q ss_pred CCceecCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEEecCCHHHHHHHHHHHHH
Q 044773 168 GISCLKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKLSMQRLKA 246 (289)
Q Consensus 168 g~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ris~~~~~~e~l~~~l~~l~~ 246 (289)
|+++.++++|+|+|++++...+ ..+++..|+ ++||.+.||..|+...++++||+++ .++++++++++++++
T Consensus 279 g~~~~~~~g~~~~~~~~~~~~~------~~~l~~~L~-~~gv~v~~g~~f~~~~~~~~Ri~~~-~~~~~~~~~l~~~~~ 349 (350)
T TIGR03537 279 GLEYLYPDATFYLWVKVPSGID------AKDYALRLL-ENGIVVAPGENFGSGEEGYVRVALV-PTLEECEEALRLWER 349 (350)
T ss_pred CCcccCCCeEEEEEEECCCCCC------HHHHHHHHH-HCCEEEcCchhhCCCCCCEEEEEec-CCHHHHHHHHHHHhc
Confidence 9988999999999999986432 246888877 5699999999998666789999998 588999999999875
No 59
>PRK06358 threonine-phosphate decarboxylase; Provisional
Probab=100.00 E-value=1.4e-32 Score=247.46 Aligned_cols=213 Identities=22% Similarity=0.391 Sum_probs=174.9
Q ss_pred CCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEec
Q 044773 10 LKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVYS 89 (289)
Q Consensus 10 ~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~s 89 (289)
+++++++++|||||||.+++.+++++|+++|+++++++|+||+|.++.+++.. .+....+ +..+++++++|
T Consensus 140 ~~~~~v~~~~P~NPtG~~~~~~~~~~l~~~a~~~~~~ii~De~Y~~~~~~~~~-~~~~~~~--------~~~~~vi~~~S 210 (354)
T PRK06358 140 EEIDLVFLCNPNNPTGQLISKEEMKKILDKCEKRNIYLIIDEAFMDFLEENET-ISMINYL--------ENFKNLIIIRA 210 (354)
T ss_pred cCCCEEEEeCCCCCCCCccCHHHHHHHHHHHHhcCCEEEEeCcccccCCCccc-hhHHHhc--------cCCCCEEEEEe
Confidence 36899999999999999999999999999999999999999999988765542 3333332 24578999999
Q ss_pred CccccCCCCceEEEEEecCHHHHHHHHhccccCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHhc-C
Q 044773 90 LSKDLGLPGFRVGAIYSNDDTVVAAATKMSSFGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEKA-G 168 (289)
Q Consensus 90 ~sK~~g~~G~r~G~i~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g 168 (289)
|||.+|++|+|+||++++++.+.+.+......+..+.+.|.++..++.+ ..++++.++.++++++++.+.|++. |
T Consensus 211 ~SK~~gl~G~RiG~lv~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~----~~~~~~~~~~~~~~r~~l~~~L~~~~~ 286 (354)
T PRK06358 211 FTKFFAIPGLRLGYGLTSNKNLAEKLLQMREPWSINTFADLAGQTLLDD----KEYIKKTIQWIKEEKDFLYNGLSEFKG 286 (354)
T ss_pred chhhccCcchhheeeecCCHHHHHHHHHhCCCCcchHHHHHHHHHHhcc----HHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 9999999999999999976666666666554555788999999999976 3457888888999999999999887 7
Q ss_pred CceecCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEEecCCHHHHHHHHHHHHHHH
Q 044773 169 ISCLKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKLSMQRLKAFV 248 (289)
Q Consensus 169 ~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ris~~~~~~e~l~~~l~~l~~~l 248 (289)
+.+.+++++ |+|+++++. .+++..++ ++||.+.||..|+..+++++||+++ ++++.+.+++.|.+++
T Consensus 287 ~~~~~~~g~-f~~~~~~~~---------~~~~~~l~-~~gI~v~~~~~f~~~~~~~iRls~~--~~~~~~~l~~~l~~~~ 353 (354)
T PRK06358 287 IKVYKPSVN-FIFFKLEKP---------IDLRKELL-KKGILIRSCSNYRGLDENYYRVAVK--SREDNKKLLKALEVIL 353 (354)
T ss_pred cEEcCCcce-EEEEEcCch---------HHHHHHHH-HCCeEEEECCCCCCCCCCEEEEEeC--CHHHHHHHHHHHHHHh
Confidence 777888765 888988732 35777777 5699999999996556789999997 4788999998887764
No 60
>PRK05764 aspartate aminotransferase; Provisional
Probab=100.00 E-value=2.9e-32 Score=248.67 Aligned_cols=226 Identities=27% Similarity=0.504 Sum_probs=186.2
Q ss_pred CCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEec
Q 044773 10 LKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVYS 89 (289)
Q Consensus 10 ~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~s 89 (289)
+++++++++||+||||.+++.+++++|+++|+++++++|+||+|..+.+++..+.++.++.. +..+++++++|
T Consensus 163 ~~~~~v~~~~p~NPtG~~~~~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~-------~~~~~~i~~~s 235 (393)
T PRK05764 163 PKTKALILNSPSNPTGAVYSPEELEAIADVAVEHDIWVLSDEIYEKLVYDGAEFTSIASLSP-------ELRDRTITVNG 235 (393)
T ss_pred ccceEEEEECCCCCCCcccCHHHHHHHHHHHHHCCcEEEEeccccceeeCCCCcccHHHcCC-------CCcCCEEEEec
Confidence 46899999999999999999999999999999999999999999988776555556665533 34578999999
Q ss_pred CccccCCCCceEEEEEecCHHHHHHHHhccc--cCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 044773 90 LSKDLGLPGFRVGAIYSNDDTVVAAATKMSS--FGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEKA 167 (289)
Q Consensus 90 ~sK~~g~~G~r~G~i~~~~~~~~~~~~~~~~--~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 167 (289)
|||.+|++|+|+||+++++ .+.+.+..... ...++++.|.++..++.. . .+++++.++.++++++.+.+.|+++
T Consensus 236 ~SK~~~~~G~RiG~i~~~~-~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~--~-~~~~~~~~~~~~~~~~~l~~~L~~~ 311 (393)
T PRK05764 236 FSKAYAMTGWRLGYAAGPK-ELIKAMSKLQSHSTSNPTSIAQYAAVAALNG--P-QDEVEEMRQAFEERRDLMVDGLNEI 311 (393)
T ss_pred CcccccCccceeEEEecCH-HHHHHHHHHHhhcccCCChHHHHHHHHHHcC--C-hHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 9999999999999999864 44444443332 335788999999999974 2 5678888999999999999999998
Q ss_pred -CCceecCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEEecCCHHHHHHHHHHHHH
Q 044773 168 -GISCLKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKLSMQRLKA 246 (289)
Q Consensus 168 -g~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ris~~~~~~e~l~~~l~~l~~ 246 (289)
|+.+..|++|+++|++++....... .+..++...+++++||.+.||..|+. ++++||+++. +++++++++++|.+
T Consensus 312 ~g~~~~~~~g~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~gi~v~~g~~f~~--~~~vRis~~~-~~~~~~~~i~~l~~ 387 (393)
T PRK05764 312 PGLECPKPEGAFYVFPNVSKLLGKSI-TDSLEFAEALLEEAGVAVVPGIAFGA--PGYVRLSYAT-SLEDLEEGLERIER 387 (393)
T ss_pred CCCcccCCCcceEEEEeccccccccc-CCHHHHHHHHHHhCCEEEccccccCC--CCEEEEEecC-CHHHHHHHHHHHHH
Confidence 8998999999999999886432211 12356888888889999999999975 7899999985 89999999999999
Q ss_pred HHHH
Q 044773 247 FVDS 250 (289)
Q Consensus 247 ~l~~ 250 (289)
++++
T Consensus 388 ~~~~ 391 (393)
T PRK05764 388 FLES 391 (393)
T ss_pred HHHh
Confidence 8864
No 61
>PRK05839 hypothetical protein; Provisional
Probab=100.00 E-value=1.8e-32 Score=248.44 Aligned_cols=216 Identities=21% Similarity=0.294 Sum_probs=168.8
Q ss_pred CCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEec
Q 044773 10 LKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVYS 89 (289)
Q Consensus 10 ~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~s 89 (289)
.++|+++++|||||||.+++.+++++|+++|+++|++||+||+|.++.++ ....++....... +.+..+++++++|
T Consensus 154 ~~~k~v~i~nP~NPTG~~~s~~~l~~i~~~~~~~~~~ii~DE~Y~~~~~~-~~~~s~~~~~~~~---~~~~~~~vi~~~S 229 (374)
T PRK05839 154 QEVDLVILNSPNNPTGRTLSLEELIEWVKLALKHDFILINDECYSEIYEN-TPPPSLLEASILV---GNESFKNVLVINS 229 (374)
T ss_pred ccccEEEEeCCCCCcCcccCHHHHHHHHHHHHHcCCEEEeccchhhcccC-CCCCCHhhhhccc---CccccCcEEEEec
Confidence 36899999999999999999999999999999999999999999987433 2334443321100 0024478999999
Q ss_pred CccccCCCCceEEEEEecCHHHHHHHHhccc--cCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 044773 90 LSKDLGLPGFRVGAIYSNDDTVVAAATKMSS--FGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEKA 167 (289)
Q Consensus 90 ~sK~~g~~G~r~G~i~~~~~~~~~~~~~~~~--~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 167 (289)
|||.||++|+|+||++++ +.+.+.+..... ....+.+.|.++..++.. ++++++.++.++++++.+.+.|
T Consensus 230 fSK~~~~~GlRiG~ii~~-~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~----~~~~~~~~~~~~~~~~~~~~~l--- 301 (374)
T PRK05839 230 ISKRSSAPGLRSGFIAGD-ASILKKYKAYRTYLGCASPLPLQKAAAVAWLD----DEHAEFFRNIYAKNLKLAREIL--- 301 (374)
T ss_pred cccccCCccceeEEEecC-HHHHHHHHHHHhhcCCCCChHHHHHHHHHhcc----chHHHHHHHHHHHHHHHHHHhc---
Confidence 999999999999999996 455555544432 234677888888877765 4457778888999988887766
Q ss_pred CCceecCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCC--CCCeEEEEEecCCHHHHHHHHHHHH
Q 044773 168 GISCLKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCT--EPGWFRVCFANMSEDTLKLSMQRLK 245 (289)
Q Consensus 168 g~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~--~~~~~Ris~~~~~~e~l~~~l~~l~ 245 (289)
++. .|++|+|+|++++. . .+++..+++++||.+.||..|+.. .++++||+++. +++++.+++++|+
T Consensus 302 ~~~--~p~gg~fi~~~~~~---~------~~~~~~l~~~~gi~v~pg~~f~~~~~~~~~iRis~~~-~~~~~~~~l~~l~ 369 (374)
T PRK05839 302 GIT--IPPATFYVWLPVDN---D------EEFTKKLYQNEGIKVLPGSFLGRNGIGKGYVRIALVY-DTPKLEKALEIIK 369 (374)
T ss_pred CCC--CCCeeEEEEEeCCC---h------HHHHHHHHHHCCEEEeCchhhCCCCCCCCeEEEEecC-CHHHHHHHHHHHH
Confidence 343 78899999999862 1 458888887799999999988753 36899999985 7999999999999
Q ss_pred HHHH
Q 044773 246 AFVD 249 (289)
Q Consensus 246 ~~l~ 249 (289)
++++
T Consensus 370 ~~l~ 373 (374)
T PRK05839 370 TYLE 373 (374)
T ss_pred HHhh
Confidence 8875
No 62
>PRK07865 N-succinyldiaminopimelate aminotransferase; Reviewed
Probab=100.00 E-value=1.3e-32 Score=248.65 Aligned_cols=214 Identities=23% Similarity=0.332 Sum_probs=170.3
Q ss_pred CCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhh-hhccccccCCCCCceEEEe
Q 044773 10 LKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEI-LKDRNCENTEVWNRVHIVY 88 (289)
Q Consensus 10 ~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~-~~~~~~~~~d~~~~~i~i~ 88 (289)
.++++|+++|||||||.+++.+++++|+++|++++++||+||+|.++.+++.. .+.... .. .+..+++++++
T Consensus 147 ~~~~~v~~~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~-~~~~~~~~~------~~~~~~~i~~~ 219 (364)
T PRK07865 147 QRPALIWLNSPSNPTGRVLGVDHLRKVVAWARERGAVVASDECYLELGWDAEP-VSILDPRVC------GGDHTGLLAVH 219 (364)
T ss_pred ccceEEEEcCCCCCCCccCCHHHHHHHHHHHHHcCCEEEEecchhhhccCCCC-Ccccccccc------CCccceEEEEe
Confidence 46899999999999999999999999999999999999999999987665432 221110 00 01347899999
Q ss_pred cCccccCCCCceEEEEEecCHHHHHHHHhcc--ccCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 044773 89 SLSKDLGLPGFRVGAIYSNDDTVVAAATKMS--SFGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEK 166 (289)
Q Consensus 89 s~sK~~g~~G~r~G~i~~~~~~~~~~~~~~~--~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 166 (289)
||||.+|++|+|+||++++++. .+.+.... ....++++.|.++..++.+ .++.++.++.++++++.+.+.|++
T Consensus 220 S~SK~~~~~GlRiG~i~~~~~~-~~~~~~~~~~~~~~~~~~~q~~~~~~l~~----~~~~~~~~~~~~~~~~~l~~~L~~ 294 (364)
T PRK07865 220 SLSKQSNLAGYRAGFVAGDPAL-VAELLEVRKHAGMMVPAPVQAAMVAALGD----DAHVREQRERYARRRAVLRPALEA 294 (364)
T ss_pred echhccCCCceeeEEEecCHHH-HHHHHHHHHhcCCCcCHHHHHHHHHHhCC----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999996544 44443322 2234788999999999986 345678888999999999999999
Q ss_pred cCCceecCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEEecCCHHHHHHHHHHHH
Q 044773 167 AGISCLKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKLSMQRLK 245 (289)
Q Consensus 167 ~g~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ris~~~~~~e~l~~~l~~l~ 245 (289)
.|+.+..+++|+|+|+.+... ..+++..+ .++||.+.||..|+...++++||+++. +++++++++++|+
T Consensus 295 ~g~~~~~~~~~~~~~~~~~~~--------~~~~~~~l-~~~gv~v~pg~~f~~~~~~~iRi~~~~-~~~~~~~~~~~l~ 363 (364)
T PRK07865 295 AGFRVDHSEAGLYLWATRGED--------CWDTVAWL-AERGILVAPGDFYGPAGAQHVRVALTA-TDERIAAAVERLA 363 (364)
T ss_pred cCCcccCCCccEEEEEeCCCC--------HHHHHHHH-HHCCEEEeCccccCcCCCCEEEEEecC-CHHHHHHHHHHhh
Confidence 898888899999999987421 12455555 578999999999886667899999985 7899999999985
No 63
>PRK07337 aminotransferase; Validated
Probab=100.00 E-value=2.5e-32 Score=248.78 Aligned_cols=222 Identities=23% Similarity=0.386 Sum_probs=176.2
Q ss_pred CCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEec
Q 044773 10 LKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVYS 89 (289)
Q Consensus 10 ~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~s 89 (289)
+++++|+++|||||||.+++.+++++|+++|+++++++|+||+|.++.+.+. ..+...+ .+++++++|
T Consensus 162 ~~~~~v~l~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~-~~~~~~~-----------~~~vi~~~S 229 (388)
T PRK07337 162 ERTRGVLLASPSNPTGTSIAPDELRRIVEAVRARGGFTIVDEIYQGLSYDAA-PVSALSL-----------GDDVITINS 229 (388)
T ss_pred ccceEEEEECCCCCCCcCcCHHHHHHHHHHHHHCCCEEEEeccccccccCCC-CcChhhc-----------cCCEEEEEe
Confidence 4789999999999999999999999999999999999999999998766543 2333322 256899999
Q ss_pred CccccCCCCceEEEEEecCHHHHHHHHhcc-c-cCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 044773 90 LSKDLGLPGFRVGAIYSNDDTVVAAATKMS-S-FGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEKA 167 (289)
Q Consensus 90 ~sK~~g~~G~r~G~i~~~~~~~~~~~~~~~-~-~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 167 (289)
|||.+|++|+|+||++++++ +.+.+.... . ..+.+.+.|.++..++.+.. .++.++.++.++++++.+.+.|++.
T Consensus 230 ~SK~~~~~G~RiG~~~~~~~-l~~~l~~~~~~~~~~~s~~~q~~~~~~l~~~~--~~~~~~~~~~~~~~r~~~~~~L~~~ 306 (388)
T PRK07337 230 FSKYFNMTGWRLGWLVVPEA-LVGTFEKLAQNLFICASALAQHAALACFEPDT--LAIYERRRAEFKRRRDFIVPALESL 306 (388)
T ss_pred chhhcCCchhheeeeecCHH-HHHHHHHHHHHhccCCChHHHHHHHHHhccCc--hHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999654 444443332 2 23467889999988887644 2345778999999999999999998
Q ss_pred CCce-ecCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCC-CCCeEEEEEecCCHHHHHHHHHHHH
Q 044773 168 GISC-LKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCT-EPGWFRVCFANMSEDTLKLSMQRLK 245 (289)
Q Consensus 168 g~~~-~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~-~~~~~Ris~~~~~~e~l~~~l~~l~ 245 (289)
|+.+ ..|++|+|+|++++..... ...+..+++..+++++||.+.||..|+.. +.+++||+++. +++++++++++|.
T Consensus 307 ~~~~~~~p~~g~f~~~~~~~~~~~-~~~~~~~~~~~ll~~~gv~v~pg~~f~~~~~~~~~Ri~~~~-~~~~l~~~l~rl~ 384 (388)
T PRK07337 307 GFKVPVMPDGAFYVYADCRGVAHP-AAGDSAALTQAMLHDAGVVLVPGRDFGPHAPRDYIRLSYAT-SMSRLEEAVARLG 384 (388)
T ss_pred CCccccCCCeeEEEEEecccccCC-CCCCHHHHHHHHHHhCCEEEeCchhhCCCCCCCEEEEEecC-CHHHHHHHHHHHH
Confidence 8765 4688999999999753110 11223567888888899999999999753 46899999996 7999999999998
Q ss_pred HHH
Q 044773 246 AFV 248 (289)
Q Consensus 246 ~~l 248 (289)
+++
T Consensus 385 ~~l 387 (388)
T PRK07337 385 KLF 387 (388)
T ss_pred HHh
Confidence 764
No 64
>PRK07550 hypothetical protein; Provisional
Probab=100.00 E-value=4.2e-32 Score=247.12 Aligned_cols=225 Identities=19% Similarity=0.278 Sum_probs=178.8
Q ss_pred HHHhhhCCCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCC
Q 044773 3 QLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWN 82 (289)
Q Consensus 3 ~~~~~~~~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 82 (289)
++++. .+++++++++||||||.+++.+++++|+++|++++++||+||+|.++.+++....+..... +..+
T Consensus 157 ~~~~~--~~~~~v~~~~P~NPtG~~~~~~~~~~i~~~~~~~~~~iI~Dd~y~~~~~~~~~~~~~~~~~--------~~~~ 226 (386)
T PRK07550 157 EALIT--PRTRAIALVTPNNPTGVVYPPELLHELYDLARRHGIALILDETYRDFDSGGGAPHDLFADP--------DWDD 226 (386)
T ss_pred HHHhc--ccCcEEEEeCCCCCCCcccCHHHHHHHHHHHHHcCeEEEEeccchhhccCCCCCcchhhCC--------Cccc
Confidence 44444 3688999999999999999999999999999999999999999998755433222332211 2346
Q ss_pred ceEEEecCccccCCCCceEEEEEecCHHHHHHHHhccc-cCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHH
Q 044773 83 RVHIVYSLSKDLGLPGFRVGAIYSNDDTVVAAATKMSS-FGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLV 161 (289)
Q Consensus 83 ~~i~i~s~sK~~g~~G~r~G~i~~~~~~~~~~~~~~~~-~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~ 161 (289)
++++++||||.+|++|+|+||++++++.+......... ..+++.+.|.++..++.. + +++.++.++.++++++.+.
T Consensus 227 ~~i~~~S~SK~~g~~G~RiG~i~~~~~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~--~-~~~~~~~~~~~~~~~~~l~ 303 (386)
T PRK07550 227 TLVHLYSFSKSYALTGHRVGAVVASPARIAEIEKFMDTVAICAPRIGQIAVAWGLPN--L-ADWRAGNRAEIARRRDAFR 303 (386)
T ss_pred cEEEEecchhhccCcccceEeeecCHHHHHHHHHHHhhcccCCCcHHHHHHHHHhcc--H-HHHHHHHHHHHHHHHHHHH
Confidence 78999999999999999999999965544443333322 234678999999999975 3 7788888999999999999
Q ss_pred HHHHhc-CCceecCCceEEEEEecCc-cccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEEecCCHHHHHH
Q 044773 162 SGLEKA-GISCLKSNAGLFCWVDMRH-LLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKL 239 (289)
Q Consensus 162 ~~l~~~-g~~~~~~~~g~~~~i~~~~-~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ris~~~~~~e~l~~ 239 (289)
+.|.++ ++.+ .+.+|+|+|++++. ..+ ..+++..+++++||.+.||..|+..+++++||+++..+++++++
T Consensus 304 ~~L~~~~~~~~-~~~g~~~~~~~~~~~~~~------~~~l~~~l~~~~gv~v~pg~~f~~~~~~~iRis~~~~~~~~~~~ 376 (386)
T PRK07550 304 AVFARLPGWEL-LASGAYFAYVRHPFPDRP------SREVARRLAKEAGILCLPGTMFGPGQEGYLRLAFANADVAGIGE 376 (386)
T ss_pred HHHHhCCCcee-CCCceEEEEecCCCCCCC------HHHHHHHHHHhcCEEEeCchhhCCCCCCEEEEEeecCCHHHHHH
Confidence 999986 6654 46789999999875 222 25688888888999999999998666789999998768999999
Q ss_pred HHHHHHHH
Q 044773 240 SMQRLKAF 247 (289)
Q Consensus 240 ~l~~l~~~ 247 (289)
++++|.++
T Consensus 377 ~~~~l~~~ 384 (386)
T PRK07550 377 LVERLRAF 384 (386)
T ss_pred HHHHHHhh
Confidence 99999876
No 65
>PRK09440 avtA valine--pyruvate transaminase; Provisional
Probab=100.00 E-value=4.2e-32 Score=249.44 Aligned_cols=222 Identities=18% Similarity=0.291 Sum_probs=171.9
Q ss_pred CCCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEe
Q 044773 9 HLKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVY 88 (289)
Q Consensus 9 ~~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~ 88 (289)
.+++++++++|||||||.+++.+++++|+++|++++++||+||+|... +... ......+ ...+++++++
T Consensus 177 ~~~~~~i~l~~P~NPTG~~~s~~~~~~l~~~a~~~~~~iI~De~Y~~~-~~~~---~~~~~~~-------~~~~~vI~~~ 245 (416)
T PRK09440 177 DEDTGAICVSRPTNPTGNVLTDEELEKLDALARQHNIPLLIDNAYGPP-FPGI---IFSEATP-------LWNPNIILCM 245 (416)
T ss_pred CCCceEEEEecCCCCCCccCCHHHHHHHHHHHHHcCCcEEEeCCcccc-CCCc---chhhcCc-------cccCCeEEEe
Confidence 457899999999999999999999999999999999999999999743 1111 1111111 1247899999
Q ss_pred cCccccCCCCceEEEEEecCHHHHHHHHhccc--cCCCChHHHHHHHHHhCCchHHHHHHHH-HHHHHHHHHHHHHHHHH
Q 044773 89 SLSKDLGLPGFRVGAIYSNDDTVVAAATKMSS--FGLVSSQTQYLLSALLSDKKFAQNYISE-NKKRLKQRHRKLVSGLE 165 (289)
Q Consensus 89 s~sK~~g~~G~r~G~i~~~~~~~~~~~~~~~~--~~~~~~~~q~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~~l~~~l~ 165 (289)
||||. +++|+|+||+++++ .+.+.+..... ...+|.+.|.++..++.++.+ ..+..+ .++.|+++++.+.+.|.
T Consensus 246 SfSK~-~~pGlRiG~~i~~~-~l~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~-~~~~~~~~~~~~~~r~~~~~~~L~ 322 (416)
T PRK09440 246 SLSKL-GLPGVRCGIVIADE-EIIEALSNMNGIISLAPGRLGPAIAAEMIESGDL-LRLSETVIRPFYRQKVQLAIALLR 322 (416)
T ss_pred ccccc-CCCcceEEEEeCCH-HHHHHHHHHHHHhccCCCcHHHHHHHHHhccchH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99996 88999999999965 44444444332 234688999999999998877 555554 68889999999999987
Q ss_pred hc----CCceecCCceEEEEEecCc-cccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCC-------CCCeEEEEEecCC
Q 044773 166 KA----GISCLKSNAGLFCWVDMRH-LLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCT-------EPGWFRVCFANMS 233 (289)
Q Consensus 166 ~~----g~~~~~~~~g~~~~i~~~~-~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~-------~~~~~Ris~~~~~ 233 (289)
+. ++.+..|++|+|+|++++. ..+ ..++...+ .++||.+.||+.|+.. ..+++||+++. +
T Consensus 323 ~~l~~~~~~~~~p~gg~fiw~~~~~~~~~------~~~~~~~l-~~~gV~v~pg~~F~~~~~~~~~~~~~~iRis~~~-~ 394 (416)
T PRK09440 323 RYLPDEPCLIHKPEGAIFLWLWFKDLPIT------TEELYQRL-KARGVLVVPGHYFFPGLDEDWPHAHQCIRMNYVQ-D 394 (416)
T ss_pred HhcccCCeEEecCCCceEEEEECCCCCCC------HHHHHHHH-HHCCEEEechHhhCCCCccccCCcCceEEEEecC-C
Confidence 64 3566789999999999986 222 24566665 5789999999998642 13589999985 7
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 044773 234 EDTLKLSMQRLKAFVDSIT 252 (289)
Q Consensus 234 ~e~l~~~l~~l~~~l~~~~ 252 (289)
++++++++++|++++++..
T Consensus 395 ~~~l~~~i~~l~~~~~~~~ 413 (416)
T PRK09440 395 DEEIEKGIAILAEEVEKAY 413 (416)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 9999999999999987643
No 66
>PLN02397 aspartate transaminase
Probab=100.00 E-value=6.5e-32 Score=248.22 Aligned_cols=211 Identities=18% Similarity=0.294 Sum_probs=168.4
Q ss_pred CCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCC--CccChhhhhhccccccCCCCCceEEE
Q 044773 10 LKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSP--GFVSIMEILKDRNCENTEVWNRVHIV 87 (289)
Q Consensus 10 ~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~--~~~~~~~~~~~~~~~~~d~~~~~i~i 87 (289)
++++++++++||||||.+++.+++++|+++|++++++||+||+|.++.+++. ...++..+.. ..++++++
T Consensus 193 ~~~~~i~~~~P~NPTG~v~s~e~l~~i~~~a~~~~~~vI~De~Y~~l~~~~~~~~~~~~~~~~~--------~~~~vI~~ 264 (423)
T PLN02397 193 DGSFVLLHACAHNPTGVDPTPEQWEQISDLIKSKNHLPFFDSAYQGFASGDLDADAQSVRMFVE--------DGHEILVA 264 (423)
T ss_pred CCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhCCcEEEEecccCCccCCchhhhhHHHHHHHh--------cCCcEEEE
Confidence 4678889999999999999999999999999999999999999999977541 2233333322 23579999
Q ss_pred ecCccccCCCCceEEEEE--ecCHHHH----HHHHhcc--ccCCCChHHHHHHHHHhCCchHHHHH---HHHHHHHHHHH
Q 044773 88 YSLSKDLGLPGFRVGAIY--SNDDTVV----AAATKMS--SFGLVSSQTQYLLSALLSDKKFAQNY---ISENKKRLKQR 156 (289)
Q Consensus 88 ~s~sK~~g~~G~r~G~i~--~~~~~~~----~~~~~~~--~~~~~~~~~q~~~~~~l~~~~~~~~~---~~~~~~~~~~~ 156 (289)
+||||+++++|+|+||++ +++..+. +.+.... ...+++.+.|.+++.++.++.+.+.+ +++.++.++++
T Consensus 265 ~SfSK~~~~~G~RvG~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~L~~~~~~~~~~~~~~~~~~~~~~r 344 (423)
T PLN02397 265 QSYAKNMGLYGERVGALSVVCKSADVAVRVKSQLKLIARPMYSNPPIHGASIVATILGDPELFSEWTKELKGMADRIISM 344 (423)
T ss_pred EECcccCCCccccceEEEEEeCCHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999995 4343332 2232322 23336678999999999886543333 77889999999
Q ss_pred HHHHHHHHHhcC----CceecCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEEecC
Q 044773 157 HRKLVSGLEKAG----ISCLKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANM 232 (289)
Q Consensus 157 ~~~l~~~l~~~g----~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ris~~~~ 232 (289)
++.+.+.|+++| +.+..|+||||+|++++ .+++..|++++||.+.++ + ||+++..
T Consensus 345 r~~l~~~L~~~~~~~~~~~~~p~gg~fl~~~l~-----------~~~~~~Ll~~~~V~v~~~--------~--Ri~~~~~ 403 (423)
T PLN02397 345 RQKLYDALEARGSPGDWSHITKQIGMFSFTGLN-----------KEQVDRMTKEYHIYMTRD--------G--RISMAGL 403 (423)
T ss_pred HHHHHHHHHhcCCCCCCCcccCCceEEEecCCC-----------HHHHHHHHHhCCEEECCC--------C--eEEEeeC
Confidence 999999999987 78888999999999875 248899999999999732 2 9999767
Q ss_pred CHHHHHHHHHHHHHHHH
Q 044773 233 SEDTLKLSMQRLKAFVD 249 (289)
Q Consensus 233 ~~e~l~~~l~~l~~~l~ 249 (289)
+++.+++++++|+++++
T Consensus 404 ~~~~i~~~~~~i~~~~~ 420 (423)
T PLN02397 404 SSKNVPYLADAIHAVVT 420 (423)
T ss_pred CHHHHHHHHHHHHHHHh
Confidence 99999999999999874
No 67
>PLN02672 methionine S-methyltransferase
Probab=100.00 E-value=6.2e-32 Score=265.01 Aligned_cols=232 Identities=22% Similarity=0.310 Sum_probs=178.9
Q ss_pred ccEEEEeCCC-CCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCC--ccChhhhhhccccccCCCCCceEEEe
Q 044773 12 VKGVLVTNPS-NPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPG--FVSIMEILKDRNCENTEVWNRVHIVY 88 (289)
Q Consensus 12 ~~~i~l~~p~-NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~--~~~~~~~~~~~~~~~~d~~~~~i~i~ 88 (289)
.++|+++||| ||||.+++.+++++|+++|++++++||+||+|.++.|++.. ..++.+..... ...+...++++++
T Consensus 829 ~~~I~L~nPnhNPTG~v~S~eeLe~Llela~k~di~VIsDEaYsdL~Fd~~~~s~~sl~s~l~~~--~~~sks~nVIvL~ 906 (1082)
T PLN02672 829 KPWVYISGPTINPTGLLYSNSEIEEILSVCAKYGARVIIDTSFSGLEYDTSGWGGWDLKSILSRL--KSSNPSFAVALLG 906 (1082)
T ss_pred CCEEEEECcCCCCcCccCCHHHHHHHHHHHHHcCCEEEEeCCCCccccCCCCCcccchhhHHHHh--ccccCCceEEEEe
Confidence 4578999996 99999999999999999999999999999999988886542 11222222110 0000124799999
Q ss_pred cCccccCCCCceEEEEEecCHHHHHHHHhccccCCCChHHHHHHHHHh-----CCchHHHHHHHHHHHHHHHHHHHHHHH
Q 044773 89 SLSKDLGLPGFRVGAIYSNDDTVVAAATKMSSFGLVSSQTQYLLSALL-----SDKKFAQNYISENKKRLKQRHRKLVSG 163 (289)
Q Consensus 89 s~sK~~g~~G~r~G~i~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l-----~~~~~~~~~~~~~~~~~~~~~~~l~~~ 163 (289)
||||.++++|+|+||++++++.+.+.+.........++..|.++..++ +.+.+ .+++++.++.++++++++.+.
T Consensus 907 SfSKkf~lpGLRIGylIap~~eLi~~l~~~~~~s~~~~~~q~Aaaaalall~~~~~~~-~~~l~e~r~~Lk~rRd~L~e~ 985 (1082)
T PLN02672 907 GLSTELLSGGHEFGFLALNDSVLIDAFHSAPGLSRPHSTLKYTIKKLLGLKNQKSSDL-LDGVAEQKKILKSRAERLKET 985 (1082)
T ss_pred CcHHhhccHHHHheeEEeCCHHHHHHHHHhhhhcCCCcHHHHHHHHHHHHHhccCcHH-HHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999877666666555433334445555555444 24455 678889999999999999999
Q ss_pred HHhcCCceecCCceEEEEEecCcccc------CC-----ChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEEecC
Q 044773 164 LEKAGISCLKSNAGLFCWVDMRHLLS------SN-----TFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANM 232 (289)
Q Consensus 164 l~~~g~~~~~~~~g~~~~i~~~~~~~------~~-----~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ris~~~~ 232 (289)
|+++|+++.+|+||||+|++++.... .. ...+..+++..|++++||.+.||..|+. ++|+||+++.
T Consensus 986 L~~~Gi~v~~PeGGFfLwl~l~~~l~~~~~~~~~~~~~~~~lds~efae~LLee~GVaV~PGs~FG~--~g~~RIsfa~- 1062 (1082)
T PLN02672 986 LEACGWDVLEPQGGISMVAKPSAYLGKTVKLKSIDGDTGIKLDSSNIREAILKSTGLCINSSSWTGI--PGYCRFSFAL- 1062 (1082)
T ss_pred HHHCCCeEecCCcEEEEEEEccccccccccccccccccccCCCHHHHHHHHHHcCCEEEecCcccCC--CCeEEEEecC-
Confidence 99999999999999999998753211 00 0123467999999889999999988874 6799999995
Q ss_pred CHHHHHHHHHHHHHHHH
Q 044773 233 SEDTLKLSMQRLKAFVD 249 (289)
Q Consensus 233 ~~e~l~~~l~~l~~~l~ 249 (289)
+++++++++++|+++++
T Consensus 1063 ~~e~LeeALerL~kf~~ 1079 (1082)
T PLN02672 1063 EDSEFDRALKAIARFKE 1079 (1082)
T ss_pred CHHHHHHHHHHHHHHHH
Confidence 88999999999998765
No 68
>PRK08637 hypothetical protein; Provisional
Probab=100.00 E-value=1.2e-31 Score=244.22 Aligned_cols=221 Identities=20% Similarity=0.232 Sum_probs=173.7
Q ss_pred CCccEEEEeCCCCCCccCCCHHHHHHHHHHHHH-----cCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCce
Q 044773 10 LKVKGVLVTNPSNPLGTTMSRNELNLLVNFITE-----KNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRV 84 (289)
Q Consensus 10 ~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~-----~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 84 (289)
+..++++++|||||||.+++.+++++|+++|++ ++++||+||+|.++.+++....++...+. +..+++
T Consensus 145 ~~~~~~~~~~P~NPTG~~~s~~~~~~l~~~~~~~~~~~~~~~iI~De~Y~~l~~~~~~~~~~~~~~~-------~~~~~v 217 (388)
T PRK08637 145 KGKVIVILNFPNNPTGYTPTEKEATAIVEAIKELADAGTKVVAVVDDAYFGLFYEDSYKESLFAALA-------NLHSNI 217 (388)
T ss_pred CCCEEEEEeCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEecccchhcccCCccchhhHHHhh-------cccccc
Confidence 345567889999999999999999999999875 89999999999998776654444332221 133454
Q ss_pred --EEEecCccccCCCCceEEEEEecC-----HHHHHHHHh-c-----cccCCCChHHHHHHHHHhCCchHHHHHHHHHHH
Q 044773 85 --HIVYSLSKDLGLPGFRVGAIYSND-----DTVVAAATK-M-----SSFGLVSSQTQYLLSALLSDKKFAQNYISENKK 151 (289)
Q Consensus 85 --i~i~s~sK~~g~~G~r~G~i~~~~-----~~~~~~~~~-~-----~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~ 151 (289)
++++|+||.+++||+|+||+++++ +.+.+.+.. . ...+.+|.+.|.++..+++++.+ ..++++.+.
T Consensus 218 i~i~~~s~SK~~~~pGlRlG~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~s~~~q~a~~~~l~~~~~-~~~~~~~~~ 296 (388)
T PRK08637 218 LAVKLDGATKEEFVWGFRVGFITFGTKAGSSQTVKEALEKKVKGLIRSNISNGPHPSQSAVLRALNSPEF-DKEKQEKFQ 296 (388)
T ss_pred eEEEeccccccCCCcccceEEEEEccccCCcHHHHHHHHHHHHHHhhcccCCCCcHHHHHHHHHhCCHHH-HHHHHHHHH
Confidence 456799999999999999999753 454444432 1 12345788999999999998776 777888888
Q ss_pred HHHHHHHHHHHHHHhc----CCceecCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEE
Q 044773 152 RLKQRHRKLVSGLEKA----GISCLKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRV 227 (289)
Q Consensus 152 ~~~~~~~~l~~~l~~~----g~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ri 227 (289)
.++++++.+.+.|++. ++.+.+|++|+|+|++++. .+..+++..+++++||.+.+. +++++||
T Consensus 297 ~~~~r~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~l~~-------~~~~~l~~~l~~~~gv~~~~~------~~~~iRi 363 (388)
T PRK08637 297 ILKERYEKTKEVLYDGKYDDAWQAYPFNSGYFMCLKLKG-------VDAEELRVHLLEKYGIGTIAL------NETDLRI 363 (388)
T ss_pred HHHHHHHHHHHHHHhhCCCCCcccccccceEEEEecCCh-------HHHHHHHHHHhhhcceEEEec------cCCceEE
Confidence 9999999999999765 5778889999999999863 123578888887889988742 2568999
Q ss_pred EEecCCHHHHHHHHHHHHHHHHHH
Q 044773 228 CFANMSEDTLKLSMQRLKAFVDSI 251 (289)
Q Consensus 228 s~~~~~~e~l~~~l~~l~~~l~~~ 251 (289)
+++..+.+++++++++|++++++.
T Consensus 364 ~~~~~~~~~i~~~~~~l~~~~~~~ 387 (388)
T PRK08637 364 AFSCVEEEDIPELFDSIYKAIKDL 387 (388)
T ss_pred EeecCCHHHHHHHHHHHHHHHHhc
Confidence 998778999999999999998753
No 69
>PTZ00376 aspartate aminotransferase; Provisional
Probab=100.00 E-value=6.7e-32 Score=247.07 Aligned_cols=218 Identities=16% Similarity=0.248 Sum_probs=168.3
Q ss_pred HHHhhhC-CCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCC--CccChhhhhhccccccCC
Q 044773 3 QLAQKRH-LKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSP--GFVSIMEILKDRNCENTE 79 (289)
Q Consensus 3 ~~~~~~~-~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~--~~~~~~~~~~~~~~~~~d 79 (289)
++++++. ++.++++++|||||||.+++.+++++|+++|++|+++||+||+|.++.+++. ...++..+..
T Consensus 167 ~~~~~~~~~~~~~~~~~~p~NPTG~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~-------- 238 (404)
T PTZ00376 167 LEDLRTAPNGSVVLLHACAHNPTGVDPTEEQWKEIADVMKRKNLIPFFDMAYQGFASGDLDKDAYAIRLFAE-------- 238 (404)
T ss_pred HHHHHhCCCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhCCcEEEEehhhcCccCCCHHHHHHHHHHHHh--------
Confidence 4444432 3467778899999999999999999999999999999999999998876431 1223333321
Q ss_pred CCCceEEEecCccccCCCCceEEEEE---ecCHHHHH---HHHhc--cccCCCChHHHHHHHHHhCCchHHH---HHHHH
Q 044773 80 VWNRVHIVYSLSKDLGLPGFRVGAIY---SNDDTVVA---AATKM--SSFGLVSSQTQYLLSALLSDKKFAQ---NYISE 148 (289)
Q Consensus 80 ~~~~~i~i~s~sK~~g~~G~r~G~i~---~~~~~~~~---~~~~~--~~~~~~~~~~q~~~~~~l~~~~~~~---~~~~~ 148 (289)
..+++++++||||.++++|+|+||++ ++++.+.. .+... ......+++.|.++..++.++.+.+ +++++
T Consensus 239 ~~~~vi~i~SfSK~~~~~GlRvG~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~ 318 (404)
T PTZ00376 239 RGVEFLVAQSFSKNMGLYGERIGALHIVCANKEEAANVLSQLKLIIRPMYSSPPIHGARIADRILSDPELRAEWLSELKE 318 (404)
T ss_pred cCCcEEEEEeCCCcccccccccceEEEEeCCHHHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 33589999999999999999999994 44432222 22221 2233356799999999999865422 44667
Q ss_pred HHHHHHHHHHHHHHHHHhcC----CceecCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCe
Q 044773 149 NKKRLKQRHRKLVSGLEKAG----ISCLKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGW 224 (289)
Q Consensus 149 ~~~~~~~~~~~l~~~l~~~g----~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~ 224 (289)
.++.++++++.+.+.|++++ +.+..|+||+|+|++++ .+++..|++++||.+.|| +
T Consensus 319 ~~~~~~~~r~~l~~~L~~~~~~~~~~~~~p~gg~f~~~~~~-----------~~~~~~L~~~~~v~v~p~--------~- 378 (404)
T PTZ00376 319 MSGRIQNMRQLLYDELKALGSPGDWEHIINQIGMFSFTGLT-----------KEQVERLIEKYHIYLLDN--------G- 378 (404)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCcccccccCceEEEecCCC-----------HHHHHHHHHhCCEeecCC--------C-
Confidence 77899999999999999874 45668999999999874 358889998999999997 1
Q ss_pred EEEEEecCCHHHHHHHHHHHHHHHH
Q 044773 225 FRVCFANMSEDTLKLSMQRLKAFVD 249 (289)
Q Consensus 225 ~Ris~~~~~~e~l~~~l~~l~~~l~ 249 (289)
||+++..++++++.++++|++++.
T Consensus 379 -Ris~~~~~~~~~~~~~~~l~~~~~ 402 (404)
T PTZ00376 379 -RISVAGLTSKNVDYVAEAIHDVVR 402 (404)
T ss_pred -eEEEeccCHHhHHHHHHHHHHHHh
Confidence 999975799999999999998865
No 70
>TIGR03539 DapC_actino succinyldiaminopimelate transaminase. This family of actinobacterial succinyldiaminopimelate transaminase enzymes (DapC) are members of the pfam00155 superfamily. Many of these genes appear adjacent to other genes encoding enzymes of the lysine biosynthesis via diaminopimelate pathway (GenProp0125).
Probab=100.00 E-value=1e-31 Score=242.04 Aligned_cols=214 Identities=25% Similarity=0.355 Sum_probs=169.2
Q ss_pred CCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEec
Q 044773 10 LKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVYS 89 (289)
Q Consensus 10 ~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~s 89 (289)
.++++|+++||+||||.+++.+++++|+++|+++|+++|+||+|.++.+++.. .+. +.++. .....+++++++|
T Consensus 141 ~~~~~v~~~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~-~~~--~~~~~---~~~~~~~vi~~~S 214 (357)
T TIGR03539 141 VGPDLIWLNSPGNPTGRVLSVDELRAIVAWARERGAVVASDECYLELGWEGRP-VSI--LDPRV---CGGDHTGLLAVHS 214 (357)
T ss_pred cCccEEEEeCCCCCcCccCCHHHHHHHHHHHHHcCeEEEEecchhhhccCCCC-ccc--eeccc---CCCccccEEEEec
Confidence 36899999999999999999999999999999999999999999987665432 221 11100 0012467999999
Q ss_pred CccccCCCCceEEEEEecCHHHHHHHHhcc--ccCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 044773 90 LSKDLGLPGFRVGAIYSNDDTVVAAATKMS--SFGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEKA 167 (289)
Q Consensus 90 ~sK~~g~~G~r~G~i~~~~~~~~~~~~~~~--~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 167 (289)
|||.+|++|+|+||+++++ .+.+.+.... ....++.+.|.++..++.+ ..+.+..++.++++++.+.+.|++.
T Consensus 215 ~SK~~~~~G~R~G~~i~~~-~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~----~~~~~~~~~~~~~~~~~~~~~L~~~ 289 (357)
T TIGR03539 215 LSKRSNLAGYRAGFVAGDP-ALVAELLTVRKHAGLMVPAPVQAAMVAALGD----DGHVAEQKARYAARRAQLKPALEKA 289 (357)
T ss_pred cccccCCCceeEEEEecCH-HHHHHHHHHHhhcccCCCHHHHHHHHHHcCC----HHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 9999999999999999864 4444443332 2234778999999999976 3446778889999999999999998
Q ss_pred CCceecCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEEecCCHHHHHHHHHHH
Q 044773 168 GISCLKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKLSMQRL 244 (289)
Q Consensus 168 g~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ris~~~~~~e~l~~~l~~l 244 (289)
|+.+.+|++|+|+|++++.. ..++...| .++||.+.||..|+..+++++||+++. +++++++++++|
T Consensus 290 g~~~~~p~~~~~~~~~~~~~--------~~~~~~~l-~~~gV~v~pg~~f~~~~~~~iRis~~~-~~~~i~~~~~~l 356 (357)
T TIGR03539 290 GFRIDHSEAGLYLWATRGED--------AWDTVDRL-AELGILVAPGDFYGPAGSQHVRVALTA-TDERIAAAVARL 356 (357)
T ss_pred CCCCcCCCccEEEEEECCCC--------HHHHHHHH-HhCCEEECCccccCCCCCCeEEEEecC-CHHHHHHHHHhh
Confidence 98889999999999987531 13466655 578999999998876667899999986 789999999876
No 71
>PRK08056 threonine-phosphate decarboxylase; Provisional
Probab=100.00 E-value=2.3e-31 Score=239.65 Aligned_cols=213 Identities=17% Similarity=0.278 Sum_probs=169.4
Q ss_pred CCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEec
Q 044773 10 LKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVYS 89 (289)
Q Consensus 10 ~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~s 89 (289)
+++|+++++|||||||.+++.+++++|+++|+++++++|+||+|.++.+.+....+ .+. ..+++++++|
T Consensus 141 ~~~k~v~l~~p~NPTG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~---~~~--------~~~~~i~~~S 209 (356)
T PRK08056 141 PDLDCLFLCTPNNPTGLLPERQLLQAIAERCKSLNIALILDEAFIDFIPDETGFIP---QLA--------DNPHLWVLRS 209 (356)
T ss_pred CCCCEEEEeCCcCCCCCCCCHHHHHHHHHHHHhcCCEEEEecchhccCCcchHHHH---Hhc--------cCCCEEEEEe
Confidence 57899999999999999999999999999999999999999999987554322212 122 2368899999
Q ss_pred CccccCCCCceEEEEEecCHHHHHHHHhccccCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHhc-C
Q 044773 90 LSKDLGLPGFRVGAIYSNDDTVVAAATKMSSFGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEKA-G 168 (289)
Q Consensus 90 ~sK~~g~~G~r~G~i~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g 168 (289)
|||.+|++|+|+||++++++.+.+.+......+.++.+.|.++..++... .+.++.++.++++++++.+.|+++ +
T Consensus 210 ~SK~~~~~G~RiG~~v~~~~~~~~~l~~~~~~~~~~~~~~~~a~~~l~~~----~~~~~~~~~~~~~r~~l~~~L~~~~~ 285 (356)
T PRK08056 210 LTKFYAIPGLRLGYLVNSDDAAVARMRRQQMPWSINAFAALAGEVILQDR----AYQQATWQWLAEEGARFYQALCALPL 285 (356)
T ss_pred chhhccCcchhheeeecCCHHHHHHHHHhCCCCchhHHHHHHHHHHhCCH----HHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999665555555554444557778888888888753 446788899999999999999887 7
Q ss_pred CceecCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEEecCCHHHHHHHHHHHHHHH
Q 044773 169 ISCLKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKLSMQRLKAFV 248 (289)
Q Consensus 169 ~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ris~~~~~~e~l~~~l~~l~~~l 248 (289)
+.+.++ +|+|+|++++.. . .+++..|+ ++||.+.||..|.....+++||+++ ++++.+.+++.|++++
T Consensus 286 ~~~~~~-~~~~~~~~~~~~--~------~~~~~~l~-~~gI~v~~~~~f~~~~~~~iRis~~--~~~~~~~l~~~l~~~~ 353 (356)
T PRK08056 286 LTVWPG-RANYLFLRCERP--D------IDLQRALL-TQRILIRSCANYPGLDSRYYRVAIR--SAAENERLLAALRNVL 353 (356)
T ss_pred cEEcCC-CCcEEEEEcCCC--h------HHHHHHHH-HCCeEEEECCCCCCCCCCEEEEEEc--CHHHHHHHHHHHHHHH
Confidence 776655 568899988732 1 35777777 6799999999996555679999997 4788888888887764
Q ss_pred H
Q 044773 249 D 249 (289)
Q Consensus 249 ~ 249 (289)
+
T Consensus 354 ~ 354 (356)
T PRK08056 354 T 354 (356)
T ss_pred c
Confidence 3
No 72
>PRK07392 threonine-phosphate decarboxylase; Validated
Probab=100.00 E-value=7.5e-31 Score=236.74 Aligned_cols=215 Identities=22% Similarity=0.294 Sum_probs=160.4
Q ss_pred HHHhhhCCCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCC
Q 044773 3 QLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWN 82 (289)
Q Consensus 3 ~~~~~~~~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 82 (289)
+++.+..+++++++++|||||||.++++++ |.++++++++ +|+||+|.++.+++. ..+....+. ..+
T Consensus 140 ~~~~~~~~~~~~~~l~nP~NPTG~~~~~~~---l~~l~~~~~~-~IiDE~y~~~~~~~~-~~s~~~~~~--------~~~ 206 (360)
T PRK07392 140 QTLPPQLTPNDGLLLNNPHNPTGKLWSREA---ILPLLEQFAL-VVVDEAFMDFLPPDA-EQSLIPCLA--------EYP 206 (360)
T ss_pred HHHHHhccCCCEEEEeCCCCCCCCCcCHHH---HHHHHHHCCE-EEEECchhhhccCcc-ccchHHHhh--------cCC
Confidence 344444457899999999999999999555 5555667775 666999998866543 234333332 447
Q ss_pred ceEEEecCccccCCCCceEEEEEecCHHHHHHHHhccccCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHH
Q 044773 83 RVHIVYSLSKDLGLPGFRVGAIYSNDDTVVAAATKMSSFGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVS 162 (289)
Q Consensus 83 ~~i~i~s~sK~~g~~G~r~G~i~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~ 162 (289)
++++++||||.||++|+|+||++++++.+ +.+......+.+|.+.|.++..++++..+ .+..++.++++++++.+
T Consensus 207 ~vi~i~S~SK~~~l~GlRiG~~v~~~~~~-~~~~~~~~~~~~s~~~q~~~~~~l~~~~~----~~~~~~~~~~~r~~l~~ 281 (360)
T PRK07392 207 NLIILRSLTKFYSLPGLRLGYAIAHPDRL-QRWQQWRDPWPVNGLAAAAAIAALADRDF----QQQTWAWLPPAREALFQ 281 (360)
T ss_pred CEEEEEechhhhcCCchheeeeeCCHHHH-HHHHhhCCCCCCCHHHHHHHHHHhccHHH----HHHHHHHHHHHHHHHHH
Confidence 89999999999999999999999965544 44554444455889999999999987544 45556678889999999
Q ss_pred HHHhc-CCceecCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEEecC-CHHHHHHH
Q 044773 163 GLEKA-GISCLKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANM-SEDTLKLS 240 (289)
Q Consensus 163 ~l~~~-g~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ris~~~~-~~e~l~~~ 240 (289)
.|+++ |+.+.+ ++++|+|++++. + ..+++..+++++||.+.||..|+..+++++||+++.. +.+++.++
T Consensus 282 ~L~~~~~~~~~~-~~~~fl~~~~~~--~------~~~l~~~ll~~~gv~v~pg~~f~~~~~~~iRi~~~~~~~~~~l~~a 352 (360)
T PRK07392 282 GLASLPGLTPLP-SAANFLLVQSQG--S------ALQLQEKLLQQHRILIRDCLSFPELGDRYFRVAVRTEAENQRLLEA 352 (360)
T ss_pred HHHhCCCcEECC-CCCCEEEEEcCC--C------HHHHHHHHHhhCCEEEEeCCCCCCCCCCEEEEEeCCHHHHHHHHHH
Confidence 99887 777654 778999998763 1 2468888777889999999999766678999999852 12455555
Q ss_pred HHHH
Q 044773 241 MQRL 244 (289)
Q Consensus 241 l~~l 244 (289)
++++
T Consensus 353 l~~~ 356 (360)
T PRK07392 353 LAAI 356 (360)
T ss_pred HHHH
Confidence 5543
No 73
>PRK09257 aromatic amino acid aminotransferase; Provisional
Probab=100.00 E-value=4.5e-31 Score=241.06 Aligned_cols=217 Identities=17% Similarity=0.268 Sum_probs=167.7
Q ss_pred HHHhhhC-CCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccC-CCCccChhhhhhccccccCCC
Q 044773 3 QLAQKRH-LKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFS-SPGFVSIMEILKDRNCENTEV 80 (289)
Q Consensus 3 ~~~~~~~-~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~-~~~~~~~~~~~~~~~~~~~d~ 80 (289)
++++... ++.++++++|||||||.+++.+++++|+++|+++++++|+||+|.++.++ +....++..+.+ .
T Consensus 163 ~~~~~~~~~~~~~~i~~~p~NPTG~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~--------~ 234 (396)
T PRK09257 163 LADLSQAPAGDVVLLHGCCHNPTGADLTPEQWDELAELLKERGLIPFLDIAYQGFGDGLEEDAYGLRAFAA--------A 234 (396)
T ss_pred HHHHHhCCCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhCCcEEEEeccccccccchHHHHHHHHHHHh--------c
Confidence 3444433 23456677999999999999999999999999999999999999988654 222334444422 3
Q ss_pred CCceEEEecCccccCCCCceEEEEEe--cC-HHHHHH---HHhc--cccCCCChHHHHHHHHHhCCchH---HHHHHHHH
Q 044773 81 WNRVHIVYSLSKDLGLPGFRVGAIYS--ND-DTVVAA---ATKM--SSFGLVSSQTQYLLSALLSDKKF---AQNYISEN 149 (289)
Q Consensus 81 ~~~~i~i~s~sK~~g~~G~r~G~i~~--~~-~~~~~~---~~~~--~~~~~~~~~~q~~~~~~l~~~~~---~~~~~~~~ 149 (289)
.+++++++||||.++++|+|+||+++ ++ +.+... +... ..+..++.+.|.+++.++.++.+ .++++++.
T Consensus 235 ~~~vi~i~SfSK~~~~~GlRiG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~ 314 (396)
T PRK09257 235 GLELLVASSFSKNFGLYGERVGALSVVAEDAEEADRVLSQLKATIRTNYSNPPAHGAAIVATILNDPELRAEWEAELEEM 314 (396)
T ss_pred CCcEEEEEEcCCcCccccccceeEEEEeCCHHHHHHHHHHHHHHhhhhcCCCcHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 46799999999999988999999984 33 322222 2222 23343577999999999998653 26778889
Q ss_pred HHHHHHHHHHHHHHHHhcC----CceecCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeE
Q 044773 150 KKRLKQRHRKLVSGLEKAG----ISCLKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWF 225 (289)
Q Consensus 150 ~~~~~~~~~~l~~~l~~~g----~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~ 225 (289)
++.++++++.+.+.|++.+ +.+..|+||+|+|++++. +++..+++++||.+.|. +
T Consensus 315 r~~~~~rr~~l~~~L~~~~~~~~~~~~~p~gg~~~w~~l~~-----------~~~~~l~~~~~V~~~p~--------~-- 373 (396)
T PRK09257 315 RERIKAMRQLLVEALKAKGPSRDFDFIARQRGMFSYSGLTP-----------EQVDRLREEFGVYAVGS--------G-- 373 (396)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCcccccccceEEEecCCCH-----------HHHHHHHHcCCEEEcCC--------C--
Confidence 9999999999999999874 667889999999998752 46677888999999872 2
Q ss_pred EEEEecCCHHHHHHHHHHHHHHH
Q 044773 226 RVCFANMSEDTLKLSMQRLKAFV 248 (289)
Q Consensus 226 Ris~~~~~~e~l~~~l~~l~~~l 248 (289)
||+++..+++++++++++|++++
T Consensus 374 ri~~~~~~~~~i~~~~~~i~~~~ 396 (396)
T PRK09257 374 RINVAGLNESNIDYVAEAIAAVL 396 (396)
T ss_pred eEEEeeCCHHHHHHHHHHHHhhC
Confidence 99997679999999999998753
No 74
>KOG0259 consensus Tyrosine aminotransferase [Amino acid transport and metabolism]
Probab=99.97 E-value=5e-30 Score=220.25 Aligned_cols=228 Identities=22% Similarity=0.350 Sum_probs=194.6
Q ss_pred CCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEec
Q 044773 10 LKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVYS 89 (289)
Q Consensus 10 ~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~s 89 (289)
.++.+++++||+||.|.+++.+.|++|+++|+++++.||.||+|.++.|++.++.++.++... --|+.+||
T Consensus 198 ENT~AivviNP~NPcGnVys~~HL~kiae~A~klgi~vIaDEVY~~~vfg~~pfvpmg~fssi---------VPVitlgg 268 (447)
T KOG0259|consen 198 ENTVAIVVINPNNPCGNVYSEDHLKKIAETAKKLGIMVIADEVYGHTVFGDKPFVPMGKFSSI---------VPVITLGG 268 (447)
T ss_pred cCeeEEEEeCCCCCCcccccHHHHHHHHHHHHHhCCeEEehhhcceeecCCCCccchhhcccc---------CceEeecc
Confidence 479999999999999999999999999999999999999999999999999999999888543 56788999
Q ss_pred CccccCCCCceEEEEEecCH-------HHHHHHHhccc-cCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHH
Q 044773 90 LSKDLGLPGFRVGAIYSNDD-------TVVAAATKMSS-FGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLV 161 (289)
Q Consensus 90 ~sK~~g~~G~r~G~i~~~~~-------~~~~~~~~~~~-~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~ 161 (289)
+||.|=.||||+||++..+. .+.+.+..+.. ...++++.|.++-..|+.-. +++..+....++.+.+.-.
T Consensus 269 isKrW~VPGWRlGWi~~hD~~gvf~~~~~~q~~~~~~~~~~~p~TiiQ~AlP~IL~kTp--~efF~k~~~~lk~na~l~y 346 (447)
T KOG0259|consen 269 ISKRWIVPGWRLGWIALHDPRGVFRDTKVVQGIKNFLDIIPGPATIIQGALPDILEKTP--EEFFDKKLSFLKSNADLCY 346 (447)
T ss_pred cccccccCCceeeeEEEecccccccchHHHHHHHHHHhccCCccHhHHHHhHHHHHhCh--HHHHHHHHHHHHhhHHHHH
Confidence 99999999999999998432 22233334433 34467799999999999754 7789999999999999999
Q ss_pred HHHHhc-CCc-eecCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEEecCCHHHHHH
Q 044773 162 SGLEKA-GIS-CLKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKL 239 (289)
Q Consensus 162 ~~l~~~-g~~-~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ris~~~~~~e~l~~ 239 (289)
+.|.+. ++. ...|+|.+|+|+++.-.. -..+.++.+|+..|.+|..+.+.||..|+. ++|+|++++. +.+.+++
T Consensus 347 ~~Lk~IP~l~cp~kPeg~mylmv~l~~s~-~~~~~dD~dFc~kL~~Eesv~~LPG~af~~--~nw~Ri~i~~-~~~~lee 422 (447)
T KOG0259|consen 347 SRLKDIPCLTCPVKPEGCMYLMVKLNLSL-FPDIEDDVDFCQKLAREESVICLPGQAFGL--KNWLRIVITV-EEEMLEE 422 (447)
T ss_pred HHHhcCCCcccCcCCCcceEEEeccchhh-hccccccHHHHHHHhhhcceEEeccccccC--CCeEEEEEcc-ChHHHHH
Confidence 999998 777 467999999999877431 123355578999999999999999999987 8999999994 8899999
Q ss_pred HHHHHHHHHHHHH
Q 044773 240 SMQRLKAFVDSIT 252 (289)
Q Consensus 240 ~l~~l~~~l~~~~ 252 (289)
+.+||+.+.+...
T Consensus 423 a~~Rik~Fc~RH~ 435 (447)
T KOG0259|consen 423 AFSRIKEFCDRHS 435 (447)
T ss_pred HHHHHHHHHHhhh
Confidence 9999999988766
No 75
>PRK06836 aspartate aminotransferase; Provisional
Probab=99.97 E-value=5.9e-30 Score=233.55 Aligned_cols=213 Identities=27% Similarity=0.479 Sum_probs=170.2
Q ss_pred CCccEEEEeCCCCCCccCCCHHHHHHHHHHHHH------cCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCc
Q 044773 10 LKVKGVLVTNPSNPLGTTMSRNELNLLVNFITE------KNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNR 83 (289)
Q Consensus 10 ~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~------~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 83 (289)
++++++++++||||||.+++.+++++|+++|++ +++++|+||+|.++.+++....++.+ ..++
T Consensus 167 ~~~~~v~~~~p~NPtG~~~~~~~~~~l~~la~~~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~-----------~~~~ 235 (394)
T PRK06836 167 PKTKAVIINSPNNPTGVVYSEETLKALAALLEEKSKEYGRPIYLISDEPYREIVYDGAEVPYIFK-----------YYDN 235 (394)
T ss_pred cCceEEEEeCCCCCCCcCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccccccccCCCCCCChHH-----------ccCc
Confidence 468999999999999999999999999999999 89999999999998776544333322 2367
Q ss_pred eEEEecCccccCCCCceEEEEEecCHHH-----HHHHHhcc---ccCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHH
Q 044773 84 VHIVYSLSKDLGLPGFRVGAIYSNDDTV-----VAAATKMS---SFGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQ 155 (289)
Q Consensus 84 ~i~i~s~sK~~g~~G~r~G~i~~~~~~~-----~~~~~~~~---~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~ 155 (289)
+++++||||.+|+||+|+||+++++... ........ ....++++.|.++..++.+.. .++.+++
T Consensus 236 ~i~~~S~SK~~~~pGlRiG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~--------~~~~~~~ 307 (394)
T PRK06836 236 SIVVYSFSKSLSLPGERIGYIAVNPEMEDADDLVAALVFANRILGFVNAPALMQRVVAKCLDATV--------DVSIYKR 307 (394)
T ss_pred EEEEecchhhccCcceeeEEEecCHHHhhhHHHHHHHHHHhhccccccCCHHHHHHHHHHhCChH--------HHHHHHH
Confidence 9999999999999999999999965431 11111111 123467789999999998741 2456788
Q ss_pred HHHHHHHHHHhcCCceecCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEEecCCHH
Q 044773 156 RHRKLVSGLEKAGISCLKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSED 235 (289)
Q Consensus 156 ~~~~l~~~l~~~g~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ris~~~~~~e 235 (289)
+++.+.+.|+++|+++.++++|+|+|++++.. + ..+++..+ .++||.+.||..|+. .+++||+++ .+++
T Consensus 308 ~r~~l~~~L~~~g~~~~~~~gg~~~~~~~~~~-~------~~~~~~~l-~~~gv~v~~g~~f~~--~~~iRi~~~-~~~~ 376 (394)
T PRK06836 308 NRDLLYDGLTELGFECVKPQGAFYLFPKSPEE-D------DVAFCEKA-KKHNLLLVPGSGFGC--PGYFRLSYC-VDTE 376 (394)
T ss_pred HHHHHHHHHHhCCCEeecCCceEEEEEeCCCC-C------HHHHHHHH-HhCCEEEECchhcCC--CCeEEEEec-CCHH
Confidence 88999999999899999999999999988752 2 24566555 578999999999974 579999998 5899
Q ss_pred HHHHHHHHHHHHHHHHH
Q 044773 236 TLKLSMQRLKAFVDSIT 252 (289)
Q Consensus 236 ~l~~~l~~l~~~l~~~~ 252 (289)
++++++++|+++++++.
T Consensus 377 ~~~~~i~~l~~~l~~~~ 393 (394)
T PRK06836 377 TIERSLPAFEKLAKEYK 393 (394)
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 99999999999997653
No 76
>PRK06959 putative threonine-phosphate decarboxylase; Provisional
Probab=99.97 E-value=7.8e-30 Score=228.11 Aligned_cols=206 Identities=19% Similarity=0.255 Sum_probs=163.6
Q ss_pred CccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEecC
Q 044773 11 KVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVYSL 90 (289)
Q Consensus 11 ~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~s~ 90 (289)
.++++++||||||||.+++.+++++|++.|++++.++|+||+|.++... .++..+. ..+++++++||
T Consensus 130 ~~~~v~l~nPnNPTG~~~s~~~l~~l~~~~~~~~~~vI~DEay~~~~~~----~s~~~~~---------~~~~vi~l~Sf 196 (339)
T PRK06959 130 ALTHLIVVNPNNPTAERLPAARLLRWHAQLAARGGTLIVDEAFADTLPA----ASLAAHT---------DRPGLVVLRSV 196 (339)
T ss_pred cCCEEEEeCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEECCCccCCCc----ccchhcc---------CCCCEEEEecC
Confidence 4678999999999999999999999999999999999999999986321 2333331 23678999999
Q ss_pred ccccCCCCceEEEEEecCHHHHHHHHhccccCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Q 044773 91 SKDLGLPGFRVGAIYSNDDTVVAAATKMSSFGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEKAGIS 170 (289)
Q Consensus 91 sK~~g~~G~r~G~i~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~ 170 (289)
||+||++|+|+||++++ +.+.+.+.+....+.+|.+.|.++..++++..+ .++.++.++++++++.+.|+++|++
T Consensus 197 SK~~gl~GlRiGy~v~~-~~li~~l~~~~~~~~vs~~~q~a~~~~L~~~~~----~~~~~~~~~~~r~~l~~~L~~~g~~ 271 (339)
T PRK06959 197 GKFFGLAGVRAGFVLAA-PALLAALRDALGAWTVSGPARHAVRAAFADAAW----QAAMRERLAADGARLAALLRAHGFA 271 (339)
T ss_pred hhhcCCcchheEEEecC-HHHHHHHHHhcCCCCCcHHHHHHHHHHhCcHHH----HHHHHHHHHHHHHHHHHHHHHCCCC
Confidence 99999999999999996 455566665555555889999999999987544 5677899999999999999998877
Q ss_pred eecCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEEecCCHHHHHHHHHHHHHHHHH
Q 044773 171 CLKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKLSMQRLKAFVDS 250 (289)
Q Consensus 171 ~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ris~~~~~~e~l~~~l~~l~~~l~~ 250 (289)
+. .+++|+|++++. . .++...|. ++||.++. |+ ..+++||+++. ++++.+.+++.|+++++.
T Consensus 272 ~~--~~~~f~~~~~~~---~------~~l~~~l~-~~GI~vr~---~~--~~~~lRisi~~-~~~e~~~l~~al~~~~~~ 333 (339)
T PRK06959 272 VH--ATPLFSWTDDPR---A------AALHAALA-RRGIWTRY---FA--PPPSVRFGLPA-DEAEWQRLEDALAECVPT 333 (339)
T ss_pred cc--CcceEEEEeCCC---H------HHHHHHHH-hCCeEEEE---CC--CCCeEEEECCC-CHHHHHHHHHHHHHHHHH
Confidence 65 357899998752 1 35777666 66999985 32 24599999963 678999999999887766
Q ss_pred HH
Q 044773 251 IT 252 (289)
Q Consensus 251 ~~ 252 (289)
..
T Consensus 334 ~~ 335 (339)
T PRK06959 334 LA 335 (339)
T ss_pred Hh
Confidence 54
No 77
>PRK03158 histidinol-phosphate aminotransferase; Provisional
Probab=99.97 E-value=2.1e-30 Score=233.73 Aligned_cols=209 Identities=19% Similarity=0.276 Sum_probs=165.4
Q ss_pred CCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEec
Q 044773 10 LKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVYS 89 (289)
Q Consensus 10 ~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~s 89 (289)
+++++++++|||||||.+++.+++.++++.|+ +++++|+||+|.++.+.+.. .+...... ..+++++++|
T Consensus 150 ~~~~~v~i~~p~NPtG~~~~~~~l~~~~~~~~-~~~~ii~De~y~~~~~~~~~-~~~~~~~~--------~~~~vi~~~S 219 (359)
T PRK03158 150 EQTKIVWICNPNNPTGTYVNHEELLSFLESVP-SHVLVVLDEAYYEYVTAEDY-PDTLPLLE--------KYENLIVLRT 219 (359)
T ss_pred CCCCEEEEeCCCCCCCCCCCHHHHHHHHHhCC-CCcEEEEECchHhhcCCccc-ccHHHHHH--------hcCCEEEEEe
Confidence 57899999999999999999998888888764 69999999999987664432 23223322 4478999999
Q ss_pred CccccCCCCceEEEEEecCHHHHHHHHhccccCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 044773 90 LSKDLGLPGFRVGAIYSNDDTVVAAATKMSSFGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEKAGI 169 (289)
Q Consensus 90 ~sK~~g~~G~r~G~i~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~ 169 (289)
|||.+|++|+|+||+++++ .+.+.+......+.+|++.|.++..++++.. +.++.++.++++++.+.+.|++.|+
T Consensus 220 ~SK~~g~~GlRiG~~v~~~-~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~----~~~~~~~~~~~~~~~~~~~l~~~~~ 294 (359)
T PRK03158 220 FSKAYGLAALRVGYGIASE-ELIEKLNIARPPFNTTRIAQYAAIAALEDQA----FLKECVEKNAEGLEQYYAFCKEYGL 294 (359)
T ss_pred chHhhcCcchhhehhcCCH-HHHHHHHHhcCCCCCCHHHHHHHHHHhcCHH----HHHHHHHHHHHHHHHHHHHHHHCCC
Confidence 9999999999999999965 4455555444445588999999999998744 4566777788888999999988888
Q ss_pred ceecCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEEecCCHHHHHHHHHHHHHH
Q 044773 170 SCLKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKLSMQRLKAF 247 (289)
Q Consensus 170 ~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ris~~~~~~e~l~~~l~~l~~~ 247 (289)
.+.++ +|+|+|++++. + ..+++..++ ++||.+.||..|+. ++++||+++ ++++++.++++|+++
T Consensus 295 ~~~~~-~g~~i~~~~~~--~------~~~~~~~l~-~~gv~v~~g~~f~~--~~~iRi~~~--~~~~~~~l~~al~~~ 358 (359)
T PRK03158 295 FYYPS-QTNFIFVDTGR--D------ANELFEALL-KKGYIVRSGAALGF--PTGVRITIG--LKEQNDKIIELLKEL 358 (359)
T ss_pred eeCCC-cCcEEEEECCC--C------HHHHHHHHH-HCCeEEeeCCCCCC--CCeEEEecC--CHHHHHHHHHHHHHh
Confidence 77654 56799998742 1 246777777 57999999999963 579999998 589999999999875
No 78
>PRK14809 histidinol-phosphate aminotransferase; Provisional
Probab=99.97 E-value=2.8e-30 Score=232.78 Aligned_cols=204 Identities=17% Similarity=0.228 Sum_probs=161.6
Q ss_pred CCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEec
Q 044773 10 LKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVYS 89 (289)
Q Consensus 10 ~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~s 89 (289)
+++|+|+++|||||||.+++.+++++|+++|++ +++||+||+|.++.+.+ +...... ..+++++++|
T Consensus 153 ~~~k~i~l~~p~NPTG~~~s~~~~~~l~~~~~~-~~~iI~De~y~~~~~~~----~~~~~~~--------~~~~vi~~~S 219 (357)
T PRK14809 153 DGERIVYLTSPHNPTGSEIPLDEVEALAERTDE-ETLVVVDEAYGEFAERP----SAVALVE--------ERDDVAVLRT 219 (357)
T ss_pred cCCcEEEEeCCCCCCCcCCCHHHHHHHHHhCcc-CcEEEEechhhhccCCc----hhHHHHh--------hCCCEEEEec
Confidence 468999999999999999999999999999875 78999999999875432 2122221 3478999999
Q ss_pred CccccCCCCceEEEEEecCHHHHHHHHhccccCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 044773 90 LSKDLGLPGFRVGAIYSNDDTVVAAATKMSSFGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEKAGI 169 (289)
Q Consensus 90 ~sK~~g~~G~r~G~i~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~ 169 (289)
|||.+|++|+|+||++++++ +.+.+......+..+++.|.++..++.+ .+++++.++.++++++.+.+.|.+.+
T Consensus 220 fSK~~~~~GlRiG~~~~~~~-~~~~~~~~~~~~~~~~~~~~~a~~~l~~----~~~~~~~~~~~~~~r~~l~~~L~~~~- 293 (357)
T PRK14809 220 FSKAYGLAGLRLGYAVVPEE-WADAYARVNTPFAASELACRAGLAALDD----DEHVERTVETARWAREYIREELDAPT- 293 (357)
T ss_pred chhHhcCcchhheeeecCHH-HHHHHHHhCCCCCCCHHHHHHHHHHhCC----HHHHHHHHHHHHHHHHHHHHHhcCcc-
Confidence 99999999999999999654 4445554444455788889988888875 45678888899999999999997542
Q ss_pred ceecCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEEecCCHHHHHHHHHHHHHHHH
Q 044773 170 SCLKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKLSMQRLKAFVD 249 (289)
Q Consensus 170 ~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ris~~~~~~e~l~~~l~~l~~~l~ 249 (289)
. +.+|+|+|+++++ ..++...+ +++||.+.||..|+. ++++||+++ +++++++++++|+++++
T Consensus 294 --~-~~~g~f~~~~~~~---------~~~~~~~l-~~~gv~v~~g~~f~~--~~~iRls~~--~~~~~~~~l~~L~~~l~ 356 (357)
T PRK14809 294 --W-ESAGNFVLAEVGD---------ASAVAEAA-QERGVIVRDCTSFGL--PECIRITCG--TREETERAVEVLNEVLA 356 (357)
T ss_pred --C-CCCCCEEEEECCC---------HHHHHHHH-HHCCEEEEECccCCC--CCeEEEecC--CHHHHHHHHHHHHHHhc
Confidence 2 5677899998741 13577665 577999999999974 579999997 47899999999998764
No 79
>PRK04781 histidinol-phosphate aminotransferase; Provisional
Probab=99.97 E-value=6.1e-30 Score=231.04 Aligned_cols=211 Identities=15% Similarity=0.243 Sum_probs=163.9
Q ss_pred CCCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEe
Q 044773 9 HLKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVY 88 (289)
Q Consensus 9 ~~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~ 88 (289)
.+++++|+++|||||||.+++.+++++|++.|+ ++++||+||+|.++.+. .+...... ..+++++++
T Consensus 150 ~~~~~lv~l~~p~NPTG~~~~~~~~~~l~~~~~-~~~~iI~Deay~~f~~~----~~~~~~~~--------~~~~vi~~~ 216 (364)
T PRK04781 150 ASNAKLVFLCSPSNPAGSAIALDQIERALQALQ-GKALVVVDEAYGEFSDV----PSAVGLLA--------RYDNLAVLR 216 (364)
T ss_pred ccCCeEEEEcCCCCCCCCCcCHHHHHHHHHhCC-CCcEEEEeCcchhhcCC----cchHHHHh--------hCCCEEEEe
Confidence 357999999999999999999999999999886 47999999999987532 12223322 447899999
Q ss_pred cCccccCCCCceEEEEEecCHHHHHHHHhccccCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHhc-
Q 044773 89 SLSKDLGLPGFRVGAIYSNDDTVVAAATKMSSFGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEKA- 167 (289)
Q Consensus 89 s~sK~~g~~G~r~G~i~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~- 167 (289)
||||+||++|+|+||+++++ .+.+.+.+....+..+++.|.++..++.++.+ ++..+..+.++++++.+.+.|+++
T Consensus 217 SfSK~~gl~GlRvGy~v~~~-~l~~~l~~~~~~~~~~~~~~~~a~~~l~~~~~--~~~~~~~~~~~~~r~~l~~~L~~~~ 293 (364)
T PRK04781 217 TLSKAHALAAARIGSLIANA-ELIAVLRRCQAPYPVPTPCAALAEQALSAPAL--AVTARRVAEVRAERERLHAALAQLP 293 (364)
T ss_pred cChhhcccccceeeeeeCCH-HHHHHHHhccCCCCCCHHHHHHHHHHHhcccH--HHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 99999999999999999954 55566666655556888999999999987643 334555557899999999999987
Q ss_pred CCceecCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEEecCCHHHHHHHHHHHHHH
Q 044773 168 GISCLKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKLSMQRLKAF 247 (289)
Q Consensus 168 g~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ris~~~~~~e~l~~~l~~l~~~ 247 (289)
++....|++|+|+|++++. . .++...+ .++||.+.||..|+. .++++||+++. +++.+.+++.|+++
T Consensus 294 ~~~~~~p~~g~f~~~~~~~---~------~~~~~~l-~~~gI~v~~~~~~~~-~~~~~Ris~~~--~~~~~~l~~al~~~ 360 (364)
T PRK04781 294 GVRRVYPSQGNFLLVRFDD---A------EAAFQAL-LAAGVVVRDQRAAPR-LSDALRITLGT--PEQNDRVLAALQRT 360 (364)
T ss_pred CCCeECCCCCcEEEEEcCC---H------HHHHHHH-HHCCeEEeeCCCCCC-CCCeEEEeCCC--HHHHHHHHHHHHHH
Confidence 6654457778999999862 1 3455555 478999999987753 36799999984 78888888888765
Q ss_pred H
Q 044773 248 V 248 (289)
Q Consensus 248 l 248 (289)
.
T Consensus 361 ~ 361 (364)
T PRK04781 361 Q 361 (364)
T ss_pred H
Confidence 3
No 80
>PRK05166 histidinol-phosphate aminotransferase; Provisional
Probab=99.97 E-value=5.3e-30 Score=232.09 Aligned_cols=212 Identities=18% Similarity=0.240 Sum_probs=165.0
Q ss_pred CCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEec
Q 044773 10 LKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVYS 89 (289)
Q Consensus 10 ~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~s 89 (289)
+++++++++|||||||.+++.+++++|+++|++ ++++|+||+|.++.+++ ...+......+ ..+++++++|
T Consensus 158 ~~~~~v~l~~p~NPtG~~~~~~~~~~l~~~~~~-~~~ii~De~y~~~~~~~-~~~~~~~~~~~-------~~~~vi~i~S 228 (371)
T PRK05166 158 RAPRMLMFSNPSNPVGSWLTADQLARVLDATPP-ETLIVVDEAYAEYAAGD-DYPSALTLLKA-------RGLPWIVLRT 228 (371)
T ss_pred cCCCEEEEeCCCCCCCCCCCHHHHHHHHHhCCC-CcEEEEECcHHHhcCCc-CcccHHHHHhh-------cCCCEEEEee
Confidence 367999999999999999999999999999874 88999999999876433 33344444331 2357999999
Q ss_pred CccccCCCCceEEEEEecCHHHHHHHHhccccCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 044773 90 LSKDLGLPGFRVGAIYSNDDTVVAAATKMSSFGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEKAGI 169 (289)
Q Consensus 90 ~sK~~g~~G~r~G~i~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~ 169 (289)
|||.||++|+|+||++++++.+.+.+........+|.+.|.++..++... +++++.++.++++++.+.+.|++.|+
T Consensus 229 fSK~~~l~GlRiG~~i~~~~~l~~~~~~~~~~~~~~~~~q~~~~~~l~~~----~~~~~~~~~~~~~r~~l~~~L~~~g~ 304 (371)
T PRK05166 229 FSKAYGLAGLRVGYGLVSDPELVGLLDRVRTPFNVNGAAQAAALAALDDE----EHLAKGVALALAERERLKKELAEMGY 304 (371)
T ss_pred chHhhhcchhheeeeecCCHHHHHHHHHhccCCCCCHHHHHHHHHHhcCH----HHHHHHHHHHHHHHHHHHHHHHHCcC
Confidence 99999999999999988677777666655555558889998888888763 45777788899999999999998888
Q ss_pred ceecCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEEecCCHHHHHHHHHHHHHHH
Q 044773 170 SCLKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKLSMQRLKAFV 248 (289)
Q Consensus 170 ~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ris~~~~~~e~l~~~l~~l~~~l 248 (289)
.+. +.+|+|+|++++.. ..+++..++ ++||.+.||..++ .++++||+++. +++.+.+.+.|+.++
T Consensus 305 ~~~-p~~g~fl~~~~~~~--------~~~l~~~l~-~~gi~v~p~~~~~--~~~~iRi~~~~--~~~~~~l~~~l~~i~ 369 (371)
T PRK05166 305 RIA-PSRANFLFFDARRP--------ASAVAEALL-RQGVIVKPWKQPG--FETFIRVSIGS--PEENDHFVAALDKVL 369 (371)
T ss_pred eeC-CCcCCEEEEeCCCC--------HHHHHHHHH-HCCeEEecCCCCC--CCCeEEEEcCC--HHHHHHHHHHHHHHh
Confidence 754 55678999987531 245777777 5699999998654 36899999984 566666666666554
No 81
>PRK05664 threonine-phosphate decarboxylase; Reviewed
Probab=99.97 E-value=2.6e-29 Score=224.07 Aligned_cols=203 Identities=21% Similarity=0.309 Sum_probs=157.8
Q ss_pred CccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEecC
Q 044773 11 KVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVYSL 90 (289)
Q Consensus 11 ~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~s~ 90 (289)
++++++++|||||||.+++.+++++|+++|++++++||+||+|.++. ...++..+ +..+++++++||
T Consensus 124 ~~~~v~l~nP~NPTG~~~s~~~l~~l~~~~~~~~~~iI~DE~y~~~~----~~~s~~~~---------~~~~~vi~~~Sf 190 (330)
T PRK05664 124 SLDVLVVVNPNNPTGRRFDPARLLAWHARLAARGGWLVVDEAFMDNT----PQHSLAAC---------AHRPGLIVLRSF 190 (330)
T ss_pred CCCEEEEeCCcCCCCCccCHHHHHHHHHHHHhcCCEEEEECCcccCC----Cccccccc---------ccCCCEEEEeec
Confidence 57889999999999999999999999999999999999999997642 11344443 234689999999
Q ss_pred ccccCCCCceEEEEEecCHHHHHHHHhccccCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Q 044773 91 SKDLGLPGFRVGAIYSNDDTVVAAATKMSSFGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEKAGIS 170 (289)
Q Consensus 91 sK~~g~~G~r~G~i~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~ 170 (289)
||++|++|+|+||+++++ .+.+.+......+..+++.|.++..+|.+..+ .++.++.++++++++.+.|++.|++
T Consensus 191 SK~~gl~GlRiG~~v~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~----~~~~~~~~~~~r~~l~~~L~~~~~~ 265 (330)
T PRK05664 191 GKFFGLAGARLGFVLAEP-ALLRALAELLGPWTVSGPTRWLAQAALADTPW----QRRQRERLLAASQRLAALLRRHGLT 265 (330)
T ss_pred cccccCCCcceEEEEeCH-HHHHHHHHhcCCCCCCHHHHHHHHHHHhChHH----HHHHHHHHHHHHHHHHHHHHHCCCc
Confidence 999999999999999964 45555555444445788999999999987543 5667889999999999999998764
Q ss_pred eecCCce--EEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEEecCCHHHHHHHHHHHHHHH
Q 044773 171 CLKSNAG--LFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKLSMQRLKAFV 248 (289)
Q Consensus 171 ~~~~~~g--~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ris~~~~~~e~l~~~l~~l~~~l 248 (289)
+.+| +|+|+++++ ..++...|. ++||.+.+ |+ ..+++||+++. ++++.+++.+.|+++.
T Consensus 266 ---~~~~~~~f~~~~~~~---------~~~~~~~l~-~~gi~v~~---f~--~~~~iRis~~~-~~~~~~~l~~al~~~~ 326 (330)
T PRK05664 266 ---PAGGCALFQWVRTED---------AAALHEFLA-RRGILTRL---FE--QPASLRFGLPA-DEADWARLDQALLAYR 326 (330)
T ss_pred ---ccCCcceEEEEecCC---------HHHHHHHHH-HCCeEEEE---CC--CCCeEEEECCC-CHHHHHHHHHHHHHHH
Confidence 3334 788887641 134666654 77999974 43 34799999984 6777888888887765
Q ss_pred HH
Q 044773 249 DS 250 (289)
Q Consensus 249 ~~ 250 (289)
++
T Consensus 327 ~~ 328 (330)
T PRK05664 327 KE 328 (330)
T ss_pred hh
Confidence 54
No 82
>PRK07908 hypothetical protein; Provisional
Probab=99.97 E-value=2.1e-29 Score=226.40 Aligned_cols=209 Identities=20% Similarity=0.264 Sum_probs=162.0
Q ss_pred CCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEec
Q 044773 10 LKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVYS 89 (289)
Q Consensus 10 ~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~s 89 (289)
+++++++++|||||||.+++.+++ .++|+ ++.++|+||+|.++. .+. ..++.+. ..+++++++|
T Consensus 138 ~~~~~i~l~np~NPTG~~~~~~~l---~~l~~-~~~~iIvDe~y~~~~-~~~-~~~l~~~----------~~~~~i~i~S 201 (349)
T PRK07908 138 DDADLVVIGNPTNPTSVLHPAEQL---LALRR-PGRILVVDEAFADAV-PGE-PESLAGD----------DLPGVLVLRS 201 (349)
T ss_pred cCCCEEEEcCCCCCCCCCcCHHHH---HHHHh-cCCEEEEECcchhhc-cCC-ccccccc----------cCCCEEEEee
Confidence 468899999999999999996654 55555 478899999999763 232 2343332 2357899999
Q ss_pred CccccCCCCceEEEEEecCHHHHHHHHhccccCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 044773 90 LSKDLGLPGFRVGAIYSNDDTVVAAATKMSSFGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEKAGI 169 (289)
Q Consensus 90 ~sK~~g~~G~r~G~i~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~ 169 (289)
|||.+|++|+|+||+++++ .+.+.+......+..+++.+.++..++... . .+++++.++.++++++++.+.|.++|+
T Consensus 202 ~SK~~~l~GlRiG~~~~~~-~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~-~-~~~~~~~~~~~~~~r~~l~~~L~~~~~ 278 (349)
T PRK07908 202 LTKTWSLAGLRVGYALGAP-DVLARLTRGRAHWPVGTLQLEAIAACCAPR-A-VAEAAADAARLAADRAEMVAGLRAVGA 278 (349)
T ss_pred cccccCCccceeeeeecCH-HHHHHHHhcCCCCCccHHHHHHHHHHhccc-c-hHHHHHHHHHHHHHHHHHHHHHHhCCc
Confidence 9999999999999999964 455555554444557778888888888743 2 567888899999999999999998888
Q ss_pred ceecCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEEecCCHHHHHHHHHHHHHHHH
Q 044773 170 SCLKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKLSMQRLKAFVD 249 (289)
Q Consensus 170 ~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ris~~~~~~e~l~~~l~~l~~~l~ 249 (289)
++.+|++|+|+|+++++ . ..+.. .++++||.+.||..|+..+++++||+++ +++++++++++|++++.
T Consensus 279 ~~~~p~~g~~~~~~~~~---~------~~~~~-~l~~~gI~v~~g~~f~~~~~~~vRis~~--~~~~~~~l~~al~~~~~ 346 (349)
T PRK07908 279 RVVDPAAAPFVLVRVPD---A------ELLRK-RLRERGIAVRRGDTFPGLDPDYLRLAVR--PRAEVPVLVQALAEILK 346 (349)
T ss_pred EeccCCCceEEEEECCc---H------HHHHH-HHHhCCEEEEECCCCCCCCCCeEEEEeC--CCccHHHHHHHHHHHHh
Confidence 88888899999999874 1 23444 4568899999999996555789999996 57888888888887654
No 83
>PRK02610 histidinol-phosphate aminotransferase; Provisional
Probab=99.97 E-value=2.2e-29 Score=228.29 Aligned_cols=205 Identities=19% Similarity=0.250 Sum_probs=156.1
Q ss_pred CCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEec
Q 044773 10 LKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVYS 89 (289)
Q Consensus 10 ~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~s 89 (289)
+++|+|+++|||||||.+++.+++++|+++| ++++||+||+|.++.+ . ..+..+ . ..+++++++|
T Consensus 167 ~~~k~i~l~~P~NPTG~~~s~~~l~~l~~~~--~~~~iI~De~Y~~~~~--~--~~~~~~-~--------~~~~~ivi~S 231 (374)
T PRK02610 167 PPVRVVFVVHPNSPTGNPLTAAELEWLRSLP--EDILVVIDEAYFEFSQ--T--TLVGEL-A--------QHPNWVILRT 231 (374)
T ss_pred CCceEEEEeCCCCCCCCCCCHHHHHHHHhcc--CCcEEEEeccccccCc--c--chHHHH-h--------cCCCEEEEEe
Confidence 4799999999999999999999999999876 4899999999998632 1 112222 1 2357888999
Q ss_pred CccccCCCCceEEEEEecCHHHHHHHHhccccCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHhc-C
Q 044773 90 LSKDLGLPGFRVGAIYSNDDTVVAAATKMSSFGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEKA-G 168 (289)
Q Consensus 90 ~sK~~g~~G~r~G~i~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g 168 (289)
|||++|++|+|+||++++ +.+.+.+......+..|.+.|.++..+++.. +.+.+..++.+++ ++.+.+.|+++ +
T Consensus 232 fSK~~g~~GlRiG~~v~~-~~l~~~l~~~~~~~~~~~~~q~a~~~~l~~~---~~~~~~~~~~~~~-r~~l~~~L~~~~~ 306 (374)
T PRK02610 232 FSKAFRLAAHRVGYAIGH-PELIAVLEKVRLPYNLPSFSQLAAQLALEHR---QELLAAIPEILQE-RDRLYQALQELPQ 306 (374)
T ss_pred cchhccCcccceeeeecC-HHHHHHHHHhcCCCCCCHHHHHHHHHHhcCH---HHHHHHHHHHHHH-HHHHHHHHHhCCC
Confidence 999999999999999995 4555555554444457889999999999864 4455555555555 67788888876 6
Q ss_pred CceecCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEEecCCHHHHHHHHHHHHHHH
Q 044773 169 ISCLKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKLSMQRLKAFV 248 (289)
Q Consensus 169 ~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ris~~~~~~e~l~~~l~~l~~~l 248 (289)
+.+ .|++|+|+|++++...+ ..+++..+ .++||.+.++ ++++||+++. ++++++++++|++++
T Consensus 307 ~~~-~p~~g~f~~~~l~~~~~------~~~~~~~l-~~~gi~v~~~-------~~~lRls~~~--~~~~~~~l~~l~~~l 369 (374)
T PRK02610 307 LRV-WPSAANFLYLRLSQDAA------LAALHQAL-KAQGTLVRHT-------GGGLRITIGT--PEENQRTLERLQAAL 369 (374)
T ss_pred cEe-CCCcceEEEEeCCCCCC------HHHHHHHH-HHCCEEEEeC-------CCeEEEeCCC--HHHHHHHHHHHHHHH
Confidence 664 47788999999975432 24566665 5779999763 3689999984 577899999999887
Q ss_pred HHH
Q 044773 249 DSI 251 (289)
Q Consensus 249 ~~~ 251 (289)
++.
T Consensus 370 ~~~ 372 (374)
T PRK02610 370 TQL 372 (374)
T ss_pred hhc
Confidence 643
No 84
>COG0079 HisC Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase [Amino acid transport and metabolism]
Probab=99.97 E-value=3.1e-29 Score=223.75 Aligned_cols=209 Identities=26% Similarity=0.373 Sum_probs=171.2
Q ss_pred CccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEecC
Q 044773 11 KVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVYSL 90 (289)
Q Consensus 11 ~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~s~ 90 (289)
++++|++||||||||..++.++++++++.+.+ +.+||+||||.++ .+ .+...++. .+++++++.||
T Consensus 145 ~~~lv~i~nPNNPTG~~~~~~~l~~l~~~~~~-~~~vVvDEAY~eF--~~---~~~~~l~~--------~~~nlivlRTf 210 (356)
T COG0079 145 KTKLVFLCNPNNPTGTLLPREELRALLEALPE-GGLVVIDEAYIEF--SP---ESSLELLK--------YPPNLIVLRTF 210 (356)
T ss_pred CCCEEEEeCCCCCCCCCCCHHHHHHHHHhCCC-CcEEEEeCchhhc--CC---chhhhhcc--------CCCCEEEEEec
Confidence 58999999999999999999999999999988 9999999999985 22 33333332 34779999999
Q ss_pred ccccCCCCceEEEEEecCHHHHHHHHhccccCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Q 044773 91 SKDLGLPGFRVGAIYSNDDTVVAAATKMSSFGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEKAGIS 170 (289)
Q Consensus 91 sK~~g~~G~r~G~i~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~ 170 (289)
||+||++|+|+||+++ ++.+++.+++....+.+|.+++.++.+++.+. +++++..+..++.++++.+.|+.+|+.
T Consensus 211 SKa~gLAGlRlGy~ia-~~~~i~~l~~vr~p~~v~~~a~~aa~aal~~~----~~~~~~~~~~~~~r~rl~~~l~~~~~~ 285 (356)
T COG0079 211 SKAFGLAGLRVGYAIA-NPELIAALNKVRPPFNVSSPALAAAIAALRDA----DYLEESVERIREERERLYAALKALGLF 285 (356)
T ss_pred HHhhhcchhceeeccC-CHHHHHHHHHhcCCCCCCHHHHHHHHHHcccH----HHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 9999999999999888 56777777777767779999999999999984 568899999999999999999998855
Q ss_pred -eecCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEEecCCHHHHHHHHHHHHHHHH
Q 044773 171 -CLKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKLSMQRLKAFVD 249 (289)
Q Consensus 171 -~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ris~~~~~~e~l~~~l~~l~~~l~ 249 (289)
+.+++ +.|++++++... ...+.+.|+ ++||.++.+.. ....++++||+++ ++++.+.++++|.+++.
T Consensus 286 ~v~pS~-aNFvlv~~~~~~-------~~~l~~~L~-~~giivR~~~~-~~~~~~~lRitvg--t~een~~ll~AL~~~~~ 353 (356)
T COG0079 286 GVFPSQ-ANFVLVRVPDAE-------AAALAEALL-KKGILVRDCSS-VGLLPGYLRITVG--TPEENDRLLAALREVLK 353 (356)
T ss_pred eecCCC-CcEEEEECCCcc-------HHHHHHHHH-HCCEEEEeCCC-CCCCCCeEEEEeC--CHHHHHHHHHHHHHHHh
Confidence 55555 578889988511 134667766 66999999876 4455789999998 46777999999988875
Q ss_pred H
Q 044773 250 S 250 (289)
Q Consensus 250 ~ 250 (289)
.
T Consensus 354 ~ 354 (356)
T COG0079 354 G 354 (356)
T ss_pred c
Confidence 4
No 85
>PRK02731 histidinol-phosphate aminotransferase; Validated
Probab=99.97 E-value=2.9e-29 Score=226.89 Aligned_cols=213 Identities=20% Similarity=0.300 Sum_probs=168.9
Q ss_pred CCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEec
Q 044773 10 LKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVYS 89 (289)
Q Consensus 10 ~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~s 89 (289)
+++++|+++|||||||.+++.+++.+|++.++ +++++|+||+|.++.+.+....++ .... ..+++++++|
T Consensus 153 ~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~-~~~~li~De~y~~~~~~~~~~~~~-~~~~--------~~~~~i~~~S 222 (367)
T PRK02731 153 PRTRLVFIANPNNPTGTYLPAEEVERFLAGVP-PDVLVVLDEAYAEYVRRKDYEDGL-ELVA--------KFPNVVVTRT 222 (367)
T ss_pred CCCcEEEEeCCCCCCCcCCCHHHHHHHHHhCC-CCcEEEEECcHHHhccCcCcccHH-HHHh--------hcCCEEEEee
Confidence 47899999999999999999999998888775 599999999998876644333333 3322 3478999999
Q ss_pred CccccCCCCceEEEEEecCHHHHHHHHhccccCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 044773 90 LSKDLGLPGFRVGAIYSNDDTVVAAATKMSSFGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEKAGI 169 (289)
Q Consensus 90 ~sK~~g~~G~r~G~i~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~ 169 (289)
|||.+|++|+|+||+++++ .+.+.+......+..+++.|.++..++++ ..++++.++.++++++.+.+.|++.|+
T Consensus 223 ~SK~~g~~G~RiG~l~~~~-~~~~~l~~~~~~~~~~~~~~~~a~~~l~~----~~~~~~~~~~~~~~~~~l~~~L~~~g~ 297 (367)
T PRK02731 223 FSKAYGLAGLRVGYGIAPP-EIIDALNRVRQPFNVNSLALAAAVAALDD----DAFVEKSRALNAEGMAWLTEFLAELGL 297 (367)
T ss_pred ehHhhcCcccceeeeeCCH-HHHHHHHHccCCCCCCHHHHHHHHHHhCC----HHHHHHHHHHHHHHHHHHHHHHHHCCC
Confidence 9999999999999999964 55555555544455788999999999986 345778888999999999999999888
Q ss_pred ceecCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEEecCCHHHHHHHHHHHHHHHH
Q 044773 170 SCLKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKLSMQRLKAFVD 249 (289)
Q Consensus 170 ~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ris~~~~~~e~l~~~l~~l~~~l~ 249 (289)
.+.+ .+|+|+|++++...+ ..+++..|. ++||.+.|+..|+ .++++||+++ +.++++.+++.|+++++
T Consensus 298 ~~~~-~~g~~~~i~~~~~~~------~~~~~~~L~-~~gI~v~~~~~~~--~~~~iRis~~--~~~e~~~l~~aL~~~~~ 365 (367)
T PRK02731 298 EYIP-SVGNFILVDFDDGKD------AAEAYQALL-KRGVIVRPVAGYG--LPNALRITIG--TEEENRRFLAALKEFLA 365 (367)
T ss_pred ccCC-CCceEEEEECCCCCC------HHHHHHHHH-HCCEEEEeCCCCC--CCCeEEEecC--CHHHHHHHHHHHHHHHh
Confidence 7764 456899999854322 246777776 6799999998886 2579999997 57889999999988764
No 86
>KOG0634 consensus Aromatic amino acid aminotransferase and related proteins [Amino acid transport and metabolism]
Probab=99.97 E-value=7.9e-29 Score=216.21 Aligned_cols=242 Identities=20% Similarity=0.216 Sum_probs=185.0
Q ss_pred CCccEEEEeCC--CCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCC--------CCccChhhhhhcc--cccc
Q 044773 10 LKVKGVLVTNP--SNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSS--------PGFVSIMEILKDR--NCEN 77 (289)
Q Consensus 10 ~~~~~i~l~~p--~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~--------~~~~~~~~~~~~~--~~~~ 77 (289)
+++++ +.+-| +||||..++.+..++|+++|++|+++||+||.|..+.++. .+..+...+..++ +...
T Consensus 202 ~~p~v-lYTIPTgqNPTG~tls~errk~iy~LArKyDfLIVeDdpYy~Lq~~~y~~~~~~~~p~~s~~~f~k~l~~sfls 280 (472)
T KOG0634|consen 202 PKPHV-LYTIPTGQNPTGNTLSLERRKKIYQLARKYDFLIVEDDPYYFLQMNTYNPSLELESPAHSSSMFLKSLVPSFLS 280 (472)
T ss_pred CCCeE-EEeCcCCCCCCCCccCHHHHHHHHHHHHHcCEEEEecCccceeeccccCCCccccCccccHHHHHHhhcCCccc
Confidence 44555 56667 8999999999999999999999999999999999887763 1112211222111 2333
Q ss_pred CCCCCceEEEecCccccCCCCceEEEEEecCHHHHHHHHhccc-cCCCChHHHHHHHHHhCCchH--HHHHHHHHHHHHH
Q 044773 78 TEVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDTVVAAATKMSS-FGLVSSQTQYLLSALLSDKKF--AQNYISENKKRLK 154 (289)
Q Consensus 78 ~d~~~~~i~i~s~sK~~g~~G~r~G~i~~~~~~~~~~~~~~~~-~~~~~~~~q~~~~~~l~~~~~--~~~~~~~~~~~~~ 154 (289)
-|..++|+.+.||||.++ ||+|+||+.+++..+...+..... ...++.+.|.++.++|+.... ..+|+.+++..|.
T Consensus 281 lDtdGrVIr~dSFSKiia-PGlRlG~it~~~~~l~ril~~ae~~t~~pSg~sq~iv~a~l~~wgqeG~~~wi~~l~~~Yt 359 (472)
T KOG0634|consen 281 LDTDGRVIRNDSFSKIIA-PGLRLGWITGNSLFLKRILDLAEVATSGPSGFSQGIVYAMLKRWGQEGFLRWIQHLRSSYT 359 (472)
T ss_pred ccccccEEeccchhhhhc-CcceeEEeecCHHHHHHHhhhcceeecCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 477899999999999997 999999999976666665554321 222666888888888885432 1588999999999
Q ss_pred HHHHHHHHHHHhc---C-CceecCCceEEEEEecCcc--ccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCC-C---CC-
Q 044773 155 QRHRKLVSGLEKA---G-ISCLKSNAGLFCWVDMRHL--LSSNTFEAEMELWKKIVYDVKLNISPGSSCHCT-E---PG- 223 (289)
Q Consensus 155 ~~~~~l~~~l~~~---g-~~~~~~~~g~~~~i~~~~~--~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~-~---~~- 223 (289)
.|++.+.+.|.+. + .++.+|.+|+|+|++++-. ..+..+....++....+.+.||.+.+|..|... + ..
T Consensus 360 ~Rrn~~l~Al~kylp~~~~~~~~P~aGmFiwv~i~~~~~~~~~~i~q~~e~i~~~~vk~gV~~v~G~~F~v~p~~s~~ki 439 (472)
T KOG0634|consen 360 ERRNALLSALDKYLPKSVCEYHPPKAGMFIWVEIPYINFDTKKSINQIEEIIFIKAVKNGVKLVCGSWFMVDPESSWSKI 439 (472)
T ss_pred HHHHHHHHHHHHhCCCCeeEEecCCcceEEEEEecccccccccchHHHHHHHHHHHHHCCeEEecCceeEEcCccCCCcc
Confidence 9999999999886 4 6789999999999999811 111222334566777778999999999999764 2 23
Q ss_pred eEEEEEecCCHHHHHHHHHHHHHHHHHHHH
Q 044773 224 WFRVCFANMSEDTLKLSMQRLKAFVDSITT 253 (289)
Q Consensus 224 ~~Ris~~~~~~e~l~~~l~~l~~~l~~~~~ 253 (289)
++|++++..+.|+++++++|+..++++.-.
T Consensus 440 ffRls~a~a~~e~l~~g~~rf~~~ike~f~ 469 (472)
T KOG0634|consen 440 FFRLSIAFAEPEKLDEGIERFGSVIKEHFI 469 (472)
T ss_pred eEEEEeecCCHHHHHHHHHHHHHHHHHHhh
Confidence 999999877999999999999999987643
No 87
>TIGR01140 L_thr_O3P_dcar L-threonine-O-3-phosphate decarboxylase. This family contains pyridoxal phosphate-binding class II aminotransferases (see PFAM:PF00222) closely related to, yet distinct from, histidinol-phosphate aminotransferase (HisC). It is found in cobalamin biosynthesis operons in Salmonella typhimurium and Bacillus halodurans (each of which also has HisC) and has been shown to have L-threonine-O-3-phosphate decarboxylase activity in Salmonella. Although the gene symbol cobD was assigned in Salmonella, cobD in other contexts refers to a different cobalamin biosynthesis enzyme, modeled by pfam03186 and called cbiB in Salmonella.
Probab=99.97 E-value=4.7e-29 Score=222.44 Aligned_cols=205 Identities=19% Similarity=0.275 Sum_probs=162.6
Q ss_pred CCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEec
Q 044773 10 LKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVYS 89 (289)
Q Consensus 10 ~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~s 89 (289)
.+++++++++||||||.+++.+++++|+++|+++|+++|+||+|.++... .++.... +..+++++++|
T Consensus 124 ~~~~~v~i~~p~NPtG~~~~~~~~~~l~~~a~~~~~~ii~De~y~~~~~~----~~~~~~~--------~~~~~~i~~~S 191 (330)
T TIGR01140 124 EELDVLVLCNPNNPTGRLIPPETLLALAARLRARGGWLVVDEAFIDFTPD----ASLAPQA--------ARFPGLVVLRS 191 (330)
T ss_pred ccCCEEEEeCCCCCCCCCCCHHHHHHHHHHhHhcCCEEEEECcccccCCc----cchhhHh--------ccCCCEEEEEe
Confidence 35789999999999999999999999999999999999999999876432 1333332 13478999999
Q ss_pred CccccCCCCceEEEEEecCHHHHHHHHhccccCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcC-
Q 044773 90 LSKDLGLPGFRVGAIYSNDDTVVAAATKMSSFGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEKAG- 168 (289)
Q Consensus 90 ~sK~~g~~G~r~G~i~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g- 168 (289)
|||.+|++|+|+||++++++ +.+.+........+|++.|.++..++.+.++ .+..++.++++++.+.+.|++++
T Consensus 192 ~SK~~g~~G~R~G~i~~~~~-~~~~l~~~~~~~~~s~~~q~~~~~~l~~~~~----~~~~~~~~~~~~~~l~~~L~~~~~ 266 (330)
T TIGR01140 192 LTKFFGLAGLRLGFVVAHPA-LLARLREALGPWTVNGPARAAGRAALADTAW----QAATRARLAAERARLAALLARLGG 266 (330)
T ss_pred cchhhcCchhhhhheeCCHH-HHHHHHhcCCCCCchHHHHHHHHHHHhchHH----HHHHHHHHHHHHHHHHHHHHhCCC
Confidence 99999999999999999654 5555655554455788999999999987544 55678899999999999999986
Q ss_pred CceecCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEEecCCHHHHHHHHHHH
Q 044773 169 ISCLKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKLSMQRL 244 (289)
Q Consensus 169 ~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ris~~~~~~e~l~~~l~~l 244 (289)
+++. +.+|+|+|++++. . .++++.|+ ++||.+.||..|+..+.+++||+++. +.++ +.++.+|
T Consensus 267 ~~~~-~~~~~f~~~~~~~---~------~~l~~~l~-~~gi~v~pg~~f~~~~~~~iRi~~~~-~~~~-~~~~~~l 329 (330)
T TIGR01140 267 LEVV-GGTALFLLVRTPD---A------AALHEALA-RRGILIRDFDNFPGLDPRYLRFALPT-DEEN-DRLEEAL 329 (330)
T ss_pred ceEC-CCCCeEEEEEcCC---H------HHHHHHHH-HCCEEEEECCCCCCCCCCEEEEEecC-HHHH-HHHHHhh
Confidence 5544 5578999998763 1 35888877 56999999999965556799999985 4444 6666654
No 88
>PRK08153 histidinol-phosphate aminotransferase; Provisional
Probab=99.97 E-value=6.3e-29 Score=224.84 Aligned_cols=213 Identities=20% Similarity=0.234 Sum_probs=166.3
Q ss_pred CCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEec
Q 044773 10 LKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVYS 89 (289)
Q Consensus 10 ~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~s 89 (289)
.++++++++|||||||.+++.+++++|+++|++ +++||+||+|..+.+++. ..+ +.. ..+++++++|
T Consensus 154 ~~~~~i~l~~P~NPtG~~~~~~~l~~l~~~~~~-~~~lI~DE~y~~~~~~~~-~~~---~~~--------~~~~~i~~~S 220 (369)
T PRK08153 154 ENAPLVYLANPDNPMGSWHPAADIVAFIEALPE-TTLLVLDEAYCETAPAGA-APP---IDT--------DDPNVIRMRT 220 (369)
T ss_pred cCCcEEEEeCCCCCCCCCCCHHHHHHHHHhCCC-CcEEEEeCchhhhcCccc-chh---hhh--------cCCCEEEEec
Confidence 478999999999999999999999999998874 999999999998765432 122 211 2367999999
Q ss_pred CccccCCCCceEEEEEecCHHHHHHHHhccccCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 044773 90 LSKDLGLPGFRVGAIYSNDDTVVAAATKMSSFGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEKAGI 169 (289)
Q Consensus 90 ~sK~~g~~G~r~G~i~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~ 169 (289)
|||++|++|+|+||+++++ .+.+.+......+.+|++.|.++..++++. +++++.++.++++++.+.+.|++.|+
T Consensus 221 fSK~~g~~GlRiG~~v~~~-~~~~~l~~~~~~~~~s~~~q~~~~~~l~~~----~~~~~~~~~~~~~r~~~~~~L~~~g~ 295 (369)
T PRK08153 221 FSKAYGLAGARVGYAIGAP-GTIKAFDKVRNHFGMNRIAQAAALAALKDQ----AYLAEVVGKIAAARDRIAAIARANGL 295 (369)
T ss_pred chHhccCcchheeeeecCH-HHHHHHHHhhcCCCCCHHHHHHHHHHhcCH----HHHHHHHHHHHHHHHHHHHHHHHCCC
Confidence 9999999999999999965 455555444444558899999999999864 44777888999999999999998887
Q ss_pred ceecCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEe-CCCCCCCCCCCeEEEEEecCCHHHHHHHHHHHHHHH
Q 044773 170 SCLKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNIS-PGSSCHCTEPGWFRVCFANMSEDTLKLSMQRLKAFV 248 (289)
Q Consensus 170 ~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~-pg~~f~~~~~~~~Ris~~~~~~e~l~~~l~~l~~~l 248 (289)
.+. |.+++|+|++++... ....++.+.|+ ++||.+. |+... .++++||+++ ++++++.+++.|++++
T Consensus 296 ~~~-p~~~~f~~~~~~~~~-----~~a~~l~~~l~-~~Gi~v~~p~~~~---~~~~iRis~~--~~~~~~~~~~al~~~~ 363 (369)
T PRK08153 296 TPL-PSATNFVAIDCGRDG-----AFARAVLDGLI-ARDIFVRMPGVAP---LDRCIRVSCG--PDEELDLFAEALPEAL 363 (369)
T ss_pred ccC-CCcCcEEEEECCCCc-----ccHHHHHHHHH-HCCeEEeeCCCCC---CCCeEEEecC--CHHHHHHHHHHHHHHH
Confidence 754 677889999876311 12245777766 5699995 66432 3579999998 5899999999999988
Q ss_pred HHHH
Q 044773 249 DSIT 252 (289)
Q Consensus 249 ~~~~ 252 (289)
+..+
T Consensus 364 ~~~~ 367 (369)
T PRK08153 364 EAAR 367 (369)
T ss_pred HHhh
Confidence 7543
No 89
>PRK01533 histidinol-phosphate aminotransferase; Validated
Probab=99.97 E-value=1.3e-29 Score=228.95 Aligned_cols=207 Identities=21% Similarity=0.303 Sum_probs=162.2
Q ss_pred CCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEec
Q 044773 10 LKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVYS 89 (289)
Q Consensus 10 ~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~s 89 (289)
+++++++++|||||||.+++.+++++|+++|++++ ++|+||+|.++.+.+. ..+....+ +..+++++++|
T Consensus 150 ~~~~~v~i~~P~NPTG~~~~~~~l~~l~~~~~~~~-~~iiDe~y~~~~~~~~-~~~~~~~~--------~~~~~vi~~~S 219 (366)
T PRK01533 150 NDTKIVWICNPNNPTGTYVNDRKLTQFIEGISENT-LIVIDEAYYEYVTAKD-FPETLPLL--------EKHKNILVLRT 219 (366)
T ss_pred cCCcEEEEeCCCCCCCCCcCHHHHHHHHHhCCCCC-EEEEEccHHHhhcccc-CcchhHHh--------ccCCCEEEEeC
Confidence 46899999999999999999999999999998866 5777999987654332 12222232 24578999999
Q ss_pred CccccCCCCceEEEEEecCHHHHHHHHhccccCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 044773 90 LSKDLGLPGFRVGAIYSNDDTVVAAATKMSSFGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEKAGI 169 (289)
Q Consensus 90 ~sK~~g~~G~r~G~i~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~ 169 (289)
|||+||++|+|+||++++ +.+.+.+......+.+|.+.|.++..+|++.. +.++.++.++++++++.+.++.+|+
T Consensus 220 fSK~~~l~GlRiG~~i~~-~~~~~~l~~~~~~~~~~~~~q~aa~~~l~~~~----~~~~~~~~~~~~r~~~~~~l~~~g~ 294 (366)
T PRK01533 220 FSKAYGLASFRVGYAVGH-EELIEKLNVVRLPFNVSSLAQKAATIAFGDDE----FIEEIVRVNTEGLRQYESFCKENEI 294 (366)
T ss_pred chHHhcChHHHHhHHhCC-HHHHHHHHHhcCCCCcCHHHHHHHHHHhCCHH----HHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 999999999999999996 45555555454455689999999999998744 4666677788888888899988888
Q ss_pred ceecCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEEecCCHHHHHHHHHHHHHHHH
Q 044773 170 SCLKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKLSMQRLKAFVD 249 (289)
Q Consensus 170 ~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ris~~~~~~e~l~~~l~~l~~~l~ 249 (289)
++.++++ .|+|++++. . .++...|+ ++||.|++ | ++++||+++ ++++.+.++++|+++++
T Consensus 295 ~~~~~~~-nf~~~~~~~---~------~~~~~~l~-~~GI~Vr~---~----~~~iRis~~--~~~~~~~l~~al~~~~~ 354 (366)
T PRK01533 295 PFYQSQT-NFIFLPVEN---G------GEIYEACA-HAGFIIRP---F----PNGVRITVG--TREQNEGVISVLQQHFE 354 (366)
T ss_pred ccCCCcC-cEEEEeCCC---H------HHHHHHHH-HCCcEEcc---C----CCceEEeCC--CHHHHHHHHHHHHHHHH
Confidence 8887765 588898752 1 34677666 68999997 3 368999998 48999999999988765
Q ss_pred HH
Q 044773 250 SI 251 (289)
Q Consensus 250 ~~ 251 (289)
..
T Consensus 355 ~~ 356 (366)
T PRK01533 355 NK 356 (366)
T ss_pred hc
Confidence 43
No 90
>PLN03026 histidinol-phosphate aminotransferase; Provisional
Probab=99.97 E-value=7.8e-29 Score=225.00 Aligned_cols=206 Identities=21% Similarity=0.251 Sum_probs=158.6
Q ss_pred CCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEec
Q 044773 10 LKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVYS 89 (289)
Q Consensus 10 ~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~s 89 (289)
+++++|+++|||||||.+++.+++++|++.+ +++|+||+|.++.+.+ +....+. ..+++++++|
T Consensus 174 ~~~~~v~l~~P~NPTG~~~~~~~l~~l~~~~----~~vi~DeaY~~~~~~~----~~~~~~~--------~~~~viv~~S 237 (380)
T PLN03026 174 HKPKLLFLTSPNNPDGSIISDDDLLKILELP----ILVVLDEAYIEFSTQE----SRMKWVK--------KYDNLIVLRT 237 (380)
T ss_pred cCCcEEEEeCCCCCCCCCCCHHHHHHHHhcC----CEEEEECcchhhcCCc----chHHHHH--------hCCCEEEEec
Confidence 5789999999999999999988888887643 8999999999864432 2222222 3478999999
Q ss_pred CccccCCCCceEEEEEecCHHHHHHHHhccccCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 044773 90 LSKDLGLPGFRVGAIYSNDDTVVAAATKMSSFGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEKAGI 169 (289)
Q Consensus 90 ~sK~~g~~G~r~G~i~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~ 169 (289)
|||.+|++|+|+||++++++ +.+.+.+....+..+.+.|.++.++|.+. +++++.++.++++++++.+.|++++.
T Consensus 238 fSK~~glaGlRiGy~~~~~~-~i~~l~~~~~~~~~~~~~q~aa~~aL~~~----~~~~~~~~~~~~~r~~l~~~L~~~~~ 312 (380)
T PLN03026 238 FSKRAGLAGLRVGYGAFPLS-IIEYLWRAKQPYNVSVAAEVAACAALSNP----KYLEDVKNALVEERERLFGLLKEVPF 312 (380)
T ss_pred chHhhcCccccceeeecCHH-HHHHHHHhcCCCCCCHHHHHHHHHHhhCH----HHHHHHHHHHHHHHHHHHHHHHHCCC
Confidence 99999999999999999654 44555555444558889999999999764 44778888999999999999998854
Q ss_pred ceecCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEEecCCHHHHHHHHHHHHHH
Q 044773 170 SCLKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKLSMQRLKAF 247 (289)
Q Consensus 170 ~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ris~~~~~~e~l~~~l~~l~~~ 247 (289)
....|++++|+|++++...+ ..+++..|+ ++||.++++..++ .++++||+++. +++.+.+++.|+++
T Consensus 313 ~~~~p~~~~f~~~~~~~~~~------~~~~~~~l~-~~gI~v~~~~~~~--~~~~lRis~~~--~~~~~~l~~al~~~ 379 (380)
T PLN03026 313 LEPYPSDANFILCRVTSGRD------AKKLKEDLA-KMGVMVRHYNSKE--LKGYIRVSVGK--PEHTDALMEALKQL 379 (380)
T ss_pred CeECCCCCeEEEEECCCCCC------HHHHHHHHH-HCCeEEEECCCCC--CCCEEEEecCC--HHHHHHHHHHHHHh
Confidence 33457778899999874322 246777777 7799999987633 36799999983 66777777777653
No 91
>PRK01688 histidinol-phosphate aminotransferase; Provisional
Probab=99.97 E-value=2.8e-29 Score=225.70 Aligned_cols=206 Identities=17% Similarity=0.250 Sum_probs=160.9
Q ss_pred CCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEec
Q 044773 10 LKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVYS 89 (289)
Q Consensus 10 ~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~s 89 (289)
+++++|+++|||||||.+++.+++++|++.|++ +.+||+||+|.++.. . .++..++. ..++++++.|
T Consensus 144 ~~~~lv~l~nPnNPTG~~~~~~~l~~l~~~~~~-~~~vivDEay~~f~~--~--~s~~~~~~--------~~~n~iv~rS 210 (351)
T PRK01688 144 DGVKVVYVCSPNNPTGNLINPQDLRTLLELTRG-KAIVVADEAYIEFCP--Q--ASLAGWLA--------EYPHLVILRT 210 (351)
T ss_pred cCCcEEEEeCCCCCCCCCCCHHHHHHHHHhCCC-CcEEEEECchhhcCC--C--CChHHHHh--------hCCCEEEEec
Confidence 478999999999999999999999999999886 688999999988631 1 24444443 3478999999
Q ss_pred CccccCCCCceEEEEEecCHHHHHHHHhccccCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHhc-C
Q 044773 90 LSKDLGLPGFRVGAIYSNDDTVVAAATKMSSFGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEKA-G 168 (289)
Q Consensus 90 ~sK~~g~~G~r~G~i~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g 168 (289)
|||+||++|+|+||++++ +.+.+.+......+.+|.+.|.++..++.+.. .+++++.++.++++++++.+.|+++ +
T Consensus 211 fSK~~glaGlRiGy~i~~-~~~i~~l~~~~~~~~v~~~~~~~a~~~L~~~~--~~~~~~~~~~~~~~r~~l~~~L~~~~~ 287 (351)
T PRK01688 211 LSKAFALAGLRCGFTLAN-EEVINLLLKVIAPYPLSTPVADIAAQALSPQG--IAAMRERVAEINANRQWLIAALKEIPC 287 (351)
T ss_pred chHhhcCHHHHHhHHhCC-HHHHHHHHhccCCCCCCHHHHHHHHHHHhcch--HHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 999999999999999995 44555565555455578888888888887542 3557778888899999999999988 6
Q ss_pred CceecCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEEecCCHHHHHHHHHHH
Q 044773 169 ISCLKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKLSMQRL 244 (289)
Q Consensus 169 ~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ris~~~~~~e~l~~~l~~l 244 (289)
+....|++++|+|++++. ..++...|+ ++||.++++..+. ..++++||+++ ++++++.++++|
T Consensus 288 ~~~~~ps~~nfi~~~~~~---------~~~l~~~L~-~~gi~vr~~~~~~-~~~~~iRis~~--~~~e~~~l~~al 350 (351)
T PRK01688 288 VEQVFDSETNYILARFTA---------SSAVFKSLW-DQGIILRDQNKQP-GLSNCLRITIG--TREECQRVIDAL 350 (351)
T ss_pred CCeECCCCCcEEEEEcCC---------HHHHHHHHH-HCCeEEEECCCcC-CCCCeEEEeCC--CHHHHHHHHHhh
Confidence 654556677899998752 135777776 6799999876553 22579999998 479999988876
No 92
>PRK06225 aspartate aminotransferase; Provisional
Probab=99.97 E-value=2e-28 Score=222.43 Aligned_cols=219 Identities=16% Similarity=0.266 Sum_probs=167.9
Q ss_pred CCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEec
Q 044773 10 LKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVYS 89 (289)
Q Consensus 10 ~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~s 89 (289)
+++++++++||+||||.+++.+++++|+++|+++|+++|+||+|.++.. +. ...... ..++++++.|
T Consensus 156 ~~~~~v~l~~p~NptG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~-~~--~~~~~~----------~~~~~i~~~s 222 (380)
T PRK06225 156 ENTRLIYLIDPLNPLGSSYTEEEIKEFAEIARDNDAFLLHDCTYRDFAR-EH--TLAAEY----------APEHTVTSYS 222 (380)
T ss_pred CCceEEEEeCCCCCCCcCCCHHHHHHHHHHHHHCCcEEEEehhHHHHhc-cC--Cchhhc----------CCCCEEEEee
Confidence 4689999999999999999999999999999999999999999986532 11 122222 2367899999
Q ss_pred CccccCCCCceEEEEEecCHHHHHHHHhcc-ccCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHhc-
Q 044773 90 LSKDLGLPGFRVGAIYSNDDTVVAAATKMS-SFGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEKA- 167 (289)
Q Consensus 90 ~sK~~g~~G~r~G~i~~~~~~~~~~~~~~~-~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~- 167 (289)
|||.+|++|+|+||++++++ +.+.+.... ...+.+.+.|.++..++... .++.++.++.++++++.+.+.|+++
T Consensus 223 ~SK~~g~~G~RiG~i~~~~~-l~~~~~~~~~~~~~~~~~~~~~a~~~l~~~---~~~~~~~~~~~~~~~~~l~~~L~~~~ 298 (380)
T PRK06225 223 FSKIFGMAGLRIGAVVATPD-LIEVVKSIVINDLGTNVIAQEAAIAGLKVK---DEWIDRIRRTTFKNQKLIKEAVDEIE 298 (380)
T ss_pred chhhcCCccceeEEEecCHH-HHHHHHHHHhcccCCCHHHHHHHHHHHhcc---hHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence 99999999999999999654 444444332 23346788888888888653 4556777788888888899999885
Q ss_pred CCce-ecCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCC-CCCCeEEEEEecCCHHHHHHHHHHHH
Q 044773 168 GISC-LKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHC-TEPGWFRVCFANMSEDTLKLSMQRLK 245 (289)
Q Consensus 168 g~~~-~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~-~~~~~~Ris~~~~~~e~l~~~l~~l~ 245 (289)
|+.+ ..+.+|+++|++++... .+..+++..|. ++||.+.||..|+. .+++++|++++. +++++++++++|+
T Consensus 299 ~~~~~~~~~~g~~~~~~~~~~~-----~~~~~l~~~l~-~~gi~v~~g~~~~~~~~~~~iR~s~~~-~~e~l~~~~~~l~ 371 (380)
T PRK06225 299 GVFLPVYPSHGNMMVIDISEAG-----IDPEDLVEYLL-ERKIFVRQGTYTSKRFGDRYIRVSFSI-PREQVEVFCEEFP 371 (380)
T ss_pred CCccccCCCCCeEEEEEccccc-----CCHHHHHHHHH-HCCEEEcCCcccCcCCCCceEEEEeCC-CHHHHHHHHHHHH
Confidence 5433 23556778899886421 12356777776 77999999987754 245799999985 8999999999999
Q ss_pred HHHHHHH
Q 044773 246 AFVDSIT 252 (289)
Q Consensus 246 ~~l~~~~ 252 (289)
+++++..
T Consensus 372 ~~~~~~~ 378 (380)
T PRK06225 372 DVVETLR 378 (380)
T ss_pred HHHHHhh
Confidence 9998764
No 93
>PRK09105 putative aminotransferase; Provisional
Probab=99.96 E-value=2.8e-28 Score=220.54 Aligned_cols=206 Identities=20% Similarity=0.314 Sum_probs=160.0
Q ss_pred CCCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEe
Q 044773 9 HLKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVY 88 (289)
Q Consensus 9 ~~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~ 88 (289)
.+++++++++|||||||.+++.++++++++.++ +++++|+||+|.++. .. .+..++.. ..++++++.
T Consensus 163 ~~~~~~v~l~nP~NPTG~~~~~~~l~~l~~~~~-~~~~lIvDEaY~~f~--~~--~s~~~~~~--------~~~~vi~~~ 229 (370)
T PRK09105 163 DPNAGLIYICNPNNPTGTVTPRADIEWLLANKP-AGSVLLVDEAYIHFS--DA--PSVVDLVA--------QRKDLIVLR 229 (370)
T ss_pred CCCCCEEEEeCCCCCCCcCcCHHHHHHHHHhCC-CCcEEEEECchHHhc--cC--cchHHHHh--------hCCCEEEEe
Confidence 457899999999999999999999999998754 599999999997642 21 24444432 457899999
Q ss_pred cCccccCCCCceEEEEEecCHHHHHHHHhccccCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 044773 89 SLSKDLGLPGFRVGAIYSNDDTVVAAATKMSSFGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEKAG 168 (289)
Q Consensus 89 s~sK~~g~~G~r~G~i~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g 168 (289)
||||.+|++|+|+||+++++ .+.+.+... .....+.+.|.++..++.+ .+++++.++.++++++++.+.|+++|
T Consensus 230 SfSK~~g~~GlRiG~~v~~~-~~i~~l~~~-~~~~~~~~~~~aa~~~L~~----~~~~~~~~~~~~~~r~~l~~~L~~~g 303 (370)
T PRK09105 230 TFSKLYGMAGMRLGLAAARP-DLLAKLARF-GHNPLPVPAAAAGLASLRD----PKLVPQRRAENAAVREDTIAWLKKKG 303 (370)
T ss_pred cccHhhcCCccceeeeecCH-HHHHHHHhc-CCCCcCHHHHHHHHHHHhC----HHHHHHHHHHHHHHHHHHHHHHHHCC
Confidence 99999999999999999964 445545444 3344777888888888876 44578888899999999999999999
Q ss_pred CceecCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEEecCCHHHHHHHHHHHHHHH
Q 044773 169 ISCLKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKLSMQRLKAFV 248 (289)
Q Consensus 169 ~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ris~~~~~~e~l~~~l~~l~~~l 248 (289)
+++.+++++|++ ++++. +..+++..|++ +||.+ +..|+ ..++++||+++ ++++++.+++.|++++
T Consensus 304 ~~~~~~~~~f~~-~~~~~--------~~~~l~~~L~~-~gI~v--~~~~~-~~~~~~Ris~~--~~~~~~~l~~al~~~~ 368 (370)
T PRK09105 304 YKCTPSQANCFM-VDVKR--------PAKAVADAMAK-QGVFI--GRSWP-IWPNWVRVTVG--SEEEMAAFRSAFAKVM 368 (370)
T ss_pred CCcCCCCCcEEE-EeCCC--------CHHHHHHHHHH-CCcEE--ecCCC-CCCCeEEEEcC--CHHHHHHHHHHHHHHh
Confidence 988888888774 77652 12468888874 59998 34453 24689999998 4788888888887765
No 94
>PRK08354 putative aminotransferase; Provisional
Probab=99.96 E-value=1.6e-27 Score=210.85 Aligned_cols=193 Identities=20% Similarity=0.289 Sum_probs=143.0
Q ss_pred CccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEecC
Q 044773 11 KVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVYSL 90 (289)
Q Consensus 11 ~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~s~ 90 (289)
++++++++|||||||.+++.+++++|+++|+++++++|+||+|.++.+++.. . ..+++++++||
T Consensus 117 ~~~~vi~~~P~NPTG~~~~~~~l~~l~~~a~~~~~~li~De~y~~f~~~~~~------~----------~~~~vi~~~S~ 180 (311)
T PRK08354 117 RNSVVFFCNPNNPDGKFYNFKELKPLLDAVEDRNALLILDEAFIDFVKKPES------P----------EGENIIKLRTF 180 (311)
T ss_pred CCCEEEEecCCCCCCCccCHHHHHHHHHHhhhcCcEEEEeCcchhccccccc------c----------CCCcEEEEecc
Confidence 4678999999999999999999999999999999999999999988665321 0 23689999999
Q ss_pred ccccCCCCceEEEEEecCHHHHHHHHhccccCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Q 044773 91 SKDLGLPGFRVGAIYSNDDTVVAAATKMSSFGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEKAGIS 170 (289)
Q Consensus 91 sK~~g~~G~r~G~i~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~ 170 (289)
||+||++|+|+||+++ +.+.+.........+.+.+.++..+++. . .+++++.++.++++++.+.+.+
T Consensus 181 SK~~~l~GlRiG~~v~----~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~l~~~l------ 247 (311)
T PRK08354 181 TKSYGLPGIRVGYVKG----FEEAFRSVRMPWSIGSTGYAFLEFLIED-D--FEHLRKTMPLIWREKERFEKAL------ 247 (311)
T ss_pred HhhcCCccceeeeeee----hHHHHHHcCCCccCCHHHHHHHHHHHHh-H--HHHHHHHHHHHHHHHHHHHHhc------
Confidence 9999999999999999 3344555554555677777777777763 2 2445565666666655554443
Q ss_pred eecCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEEecCCHHHHHHHHHHHHHH
Q 044773 171 CLKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKLSMQRLKAF 247 (289)
Q Consensus 171 ~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ris~~~~~~e~l~~~l~~l~~~ 247 (289)
..+++++|++ ++++. ..++++.+. ++||.+.||..|+. ++++||+++. +++.+++++.|+++
T Consensus 248 ~~~~~~~~~~-~~~~~---------~~~~~~~l~-~~gv~v~~g~~f~~--~~~iRi~~~~--~~~~~~l~~al~~~ 309 (311)
T PRK08354 248 YVKSDANFFI-KDVGD---------AEKFVEFLK-RNGILVRDCTSFGL--PGYIRFSVRD--REENEKLIRALREW 309 (311)
T ss_pred CCCCCCcEEE-EECCC---------HHHHHHHHH-HCCeEEEecccCCC--CCeEEEEeCC--HHHHHHHHHHHHHh
Confidence 2356777666 55541 135777665 77999999999963 5899999984 55666666666553
No 95
>PRK03317 histidinol-phosphate aminotransferase; Provisional
Probab=99.96 E-value=9.8e-28 Score=217.05 Aligned_cols=212 Identities=21% Similarity=0.314 Sum_probs=160.6
Q ss_pred HHHhhhCCCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCC
Q 044773 3 QLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWN 82 (289)
Q Consensus 3 ~~~~~~~~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 82 (289)
++++... ++++|+++|||||||.+++.+++++|+++| ++++|+||+|.++.+.+. .+..++.+ ..+
T Consensus 153 ~~~~~~~-~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~---~~~lI~DE~y~~~~~~~~--~~~~~~~~--------~~~ 218 (368)
T PRK03317 153 VAAIAEH-RPDVVFLTSPNNPTGTALPLDDVEAILDAA---PGIVVVDEAYAEFRRSGT--PSALTLLP--------EYP 218 (368)
T ss_pred HHHHhcc-CCCEEEEeCCCCCCCCCCCHHHHHHHHHHC---CceEEEeCCchhhcccCC--cCHHHHHH--------hCC
Confidence 4444433 688999999999999999988888887766 799999999998765442 23344432 335
Q ss_pred ceEEEecCccccCCCCceEEEEEecCHHHHHHHHhccccCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHH
Q 044773 83 RVHIVYSLSKDLGLPGFRVGAIYSNDDTVVAAATKMSSFGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVS 162 (289)
Q Consensus 83 ~~i~i~s~sK~~g~~G~r~G~i~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~ 162 (289)
++++++||||++|++|+|+||+++++ .+.+.+......+.+|++.|.++..+++... +..+.++.++++++.+.+
T Consensus 219 ~~i~~~SfSK~~g~~GlRiG~~~~~~-~~~~~l~~~~~~~~~s~~~~~a~~~~l~~~~----~~~~~~~~~~~~~~~l~~ 293 (368)
T PRK03317 219 RLVVSRTMSKAFAFAGGRLGYLAAAP-AVVDALRLVRLPYHLSAVTQAAARAALRHAD----ELLASVAALRAERDRVVA 293 (368)
T ss_pred CEEEEEechhhhccchhhhhhhhCCH-HHHHHHHhcCCCCCCCHHHHHHHHHHhhCHH----HHHHHHHHHHHHHHHHHH
Confidence 88999999999999999999999954 4555555444445588899999999998632 234455668888999999
Q ss_pred HHHhcCCceecCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEEecCCHHHHHHHHH
Q 044773 163 GLEKAGISCLKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKLSMQ 242 (289)
Q Consensus 163 ~l~~~g~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ris~~~~~~e~l~~~l~ 242 (289)
.|++.|+.+.++++++++|.++.. ..++...|+ ++||.+.++. .++++||+++ ++++++.+++
T Consensus 294 ~L~~~g~~~~~~~~~~~~~~~~~~---------~~~~~~~l~-~~Gv~v~~~~-----~~~~iRi~~~--~~~~~~~~~~ 356 (368)
T PRK03317 294 WLRELGLRVAPSDANFVLFGRFAD---------RHAVWQGLL-DRGVLIRDVG-----IPGWLRVTIG--TPEENDAFLA 356 (368)
T ss_pred HHHHCCCEeCCCCCcEEEEeccCC---------HHHHHHHHH-HCCEEEEeCC-----CCCeEEEecC--CHHHHHHHHH
Confidence 999889988889999988866531 134666665 6799998742 2579999997 4788999998
Q ss_pred HHHHHHHH
Q 044773 243 RLKAFVDS 250 (289)
Q Consensus 243 ~l~~~l~~ 250 (289)
.++++++.
T Consensus 357 ~l~~~~~~ 364 (368)
T PRK03317 357 ALAEVLAT 364 (368)
T ss_pred HHHHHHHH
Confidence 88887653
No 96
>PRK04870 histidinol-phosphate aminotransferase; Provisional
Probab=99.96 E-value=6e-28 Score=217.53 Aligned_cols=209 Identities=18% Similarity=0.237 Sum_probs=160.1
Q ss_pred HHHhhhCCCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCC
Q 044773 3 QLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWN 82 (289)
Q Consensus 3 ~~~~~~~~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 82 (289)
++++.. .++++|+++|||||||.+++.+++++|+++| +.++|+||+|.++... ... ..+. ..+
T Consensus 146 ~~~~~~-~~~~~v~l~~p~NPtG~~~~~~~~~~i~~~~---~~~ii~De~y~~~~~~--~~~---~~~~--------~~~ 208 (356)
T PRK04870 146 LAAIAE-HRPALVFLAYPNNPTGNLFDDADVERIIEAA---PGLVVVDEAYQPFAGD--SWL---PRLA--------RFP 208 (356)
T ss_pred HHHhhc-CCCCEEEEcCCCCCCCCCCCHHHHHHHHHHC---CCEEEEECCchhhcCc--chH---HHHh--------hCC
Confidence 344433 3789999999999999999999999999988 7889999999875321 111 1111 346
Q ss_pred ceEEEecCccccCCCCceEEEEEecCHHHHHHHHhccccCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHH
Q 044773 83 RVHIVYSLSKDLGLPGFRVGAIYSNDDTVVAAATKMSSFGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVS 162 (289)
Q Consensus 83 ~~i~i~s~sK~~g~~G~r~G~i~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~ 162 (289)
+++++.|||| +|++|+|+||++++++ +.+.+......+..+.+.|.++..+++.. +++++.++.++++++.+.+
T Consensus 209 ~vi~~~S~SK-~~~~GlRiG~~i~~~~-~i~~~~~~~~~~~~~~~~q~~a~~~l~~~----~~~~~~~~~~~~~~~~l~~ 282 (356)
T PRK04870 209 NLLVMRTVSK-LGLAGLRLGYLAGHPA-WIAELDKVRPPYNVNVLTQATALFALEHV----DVLDAQAAQLRAERTRLAA 282 (356)
T ss_pred CEEEEecchh-hhhHHHhhhhhhCCHH-HHHHHHHccCCCcCCHHHHHHHHHHHhCH----HHHHHHHHHHHHHHHHHHH
Confidence 7999999999 8999999999999654 44445444444457889998888888753 3367778888999999999
Q ss_pred HHHhc-CCceecCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEEecCCHHHHHHHH
Q 044773 163 GLEKA-GISCLKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKLSM 241 (289)
Q Consensus 163 ~l~~~-g~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ris~~~~~~e~l~~~l 241 (289)
.|+++ |+.+. +.+|+|+|++++. . .++...+ +++||.+.|+..|+...++++||+++ ++++.+.++
T Consensus 283 ~L~~~~~~~~~-~~~~~~~~~~~~~---~------~~~~~~l-~~~gI~v~~~~~f~~~~~~~iRis~~--~~~~~~~l~ 349 (356)
T PRK04870 283 ALAALPGVTVF-PSAANFILVRVPD---A------AAVFDGL-KTRGVLVKNLSGMHPLLANCLRVTVG--TPEENAQFL 349 (356)
T ss_pred HHHhCCCcEEC-CCCCeEEEEECCC---H------HHHHHHH-HHCCEEEEECCCCCCCCCCeEEEeCC--CHHHHHHHH
Confidence 99987 77665 5566799998761 1 3455554 58899999999997656789999998 478888888
Q ss_pred HHHHHH
Q 044773 242 QRLKAF 247 (289)
Q Consensus 242 ~~l~~~ 247 (289)
++|.++
T Consensus 350 ~al~~~ 355 (356)
T PRK04870 350 AALKAA 355 (356)
T ss_pred HHHHHh
Confidence 888765
No 97
>PLN02368 alanine transaminase
Probab=99.96 E-value=4.7e-28 Score=220.82 Aligned_cols=176 Identities=18% Similarity=0.314 Sum_probs=136.7
Q ss_pred CccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCC-CccChhhhhhccccccCCCCCceEEEec
Q 044773 11 KVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSP-GFVSIMEILKDRNCENTEVWNRVHIVYS 89 (289)
Q Consensus 11 ~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~-~~~~~~~~~~~~~~~~~d~~~~~i~i~s 89 (289)
++|+++++|||||||.+++.+++++|+++|++++++||+||+|.++.|++. .+.++.++..+++ .+.+..+++++++|
T Consensus 210 ~~k~l~l~nP~NPTG~v~s~e~l~~l~~~a~~~~~~II~DE~Y~~l~y~~~~~~~s~~~~~~~~~-~~~~~~~~vI~~~S 288 (407)
T PLN02368 210 TVRAMVIINPGNPTGQCLSEANLREILKFCYQERLVLLGDEVYQQNIYQDERPFISAKKVLMDMG-PPISKEVQLVSFHT 288 (407)
T ss_pred CeEEEEEECCCCCCCccCCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCcccHHHHHhhhc-ccccccceEEEEec
Confidence 689999999999999999999999999999999999999999999888654 4456655532210 00012358999999
Q ss_pred Ccccc-CCCCceEEEEEe--cCHHHHHHHHhcc-ccCCCChHHHHHHHHHhCCch-----H--HHHHHHHHHHHHHHHHH
Q 044773 90 LSKDL-GLPGFRVGAIYS--NDDTVVAAATKMS-SFGLVSSQTQYLLSALLSDKK-----F--AQNYISENKKRLKQRHR 158 (289)
Q Consensus 90 ~sK~~-g~~G~r~G~i~~--~~~~~~~~~~~~~-~~~~~~~~~q~~~~~~l~~~~-----~--~~~~~~~~~~~~~~~~~ 158 (289)
|||+| |++|+|+||+++ .++.+.+.+.... ..++.|.+.|.++..++.... + ..++.++..+.|++|++
T Consensus 289 fSK~~~~~~GlRiGy~i~~~~~~~li~~~~~~~~~~~~~~~~~Q~aa~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~rr~ 368 (407)
T PLN02368 289 VSKGYWGECGQRGGYFEMTNIPPKTVEEIYKVASIALSPNVSGQIFMGLMVNPPKPGDISYDQFVRESKGILESLRRRAR 368 (407)
T ss_pred CCcccccCCccceEEEEEeCCCHHHHHHHHHHhcccCCCCcHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHHHHHHHHH
Confidence 99999 899999999995 2344444444432 234478899999999997541 1 03334567899999999
Q ss_pred HHHHHHHhc-CCceecCCceEEEEEecCcc
Q 044773 159 KLVSGLEKA-GISCLKSNAGLFCWVDMRHL 187 (289)
Q Consensus 159 ~l~~~l~~~-g~~~~~~~~g~~~~i~~~~~ 187 (289)
.+.+.|+++ |+.+..|+|+||+|++++-+
T Consensus 369 ~~~~~L~~~~g~~~~~P~Gafy~~~~i~lp 398 (407)
T PLN02368 369 MMTDGFNSCKNVVCNFTEGAMYSFPQIKLP 398 (407)
T ss_pred HHHHHHhCCCCeEeCCCCeeeEeccCCCCC
Confidence 999999998 99999999999999876643
No 98
>PRK00950 histidinol-phosphate aminotransferase; Validated
Probab=99.96 E-value=2.2e-27 Score=214.19 Aligned_cols=205 Identities=18% Similarity=0.257 Sum_probs=155.9
Q ss_pred CCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEec
Q 044773 10 LKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVYS 89 (289)
Q Consensus 10 ~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~s 89 (289)
++++++++++||||||.+++.++ +.++|+++++++|+||+|.++. +. +...+.. ..+++++++|
T Consensus 157 ~~~~~v~~~~p~nptG~~~~~~~---l~~l~~~~~~~li~De~y~~~~--~~---~~~~~~~--------~~~~vi~~~S 220 (361)
T PRK00950 157 EKTKVIFLCTPNNPTGNLIPEED---IRKILESTDALVFVDEAYVEFA--EY---DYTPLAL--------EYDNLIIGRT 220 (361)
T ss_pred cCCCEEEEeCCCCCCCCCcCHHH---HHHHHHHCCcEEEEECchhhhC--cc---chHHHHH--------hcCCEEEEEe
Confidence 46899999999999999999555 5555677899999999998753 22 2222322 3368899999
Q ss_pred CccccCCCCceEEEEEecCHHHHHHHHhccccCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 044773 90 LSKDLGLPGFRVGAIYSNDDTVVAAATKMSSFGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEKAGI 169 (289)
Q Consensus 90 ~sK~~g~~G~r~G~i~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~ 169 (289)
|||++|++|+|+||++++++ +.+.+......+..+++.|.++..++.+. +++++.++.++++++.+.+.|. +
T Consensus 221 ~SK~~g~~GlRiG~~~~~~~-~~~~~~~~~~~~~~~~~~~~~a~~~l~~~----~~~~~~~~~~~~~r~~l~~~l~---~ 292 (361)
T PRK00950 221 FSKVFGLAGLRIGYGFVPEW-LIDYYMRAKTPFSLTRLSQAAAIAALSDK----EYIEKSIEHGIKSREYLYNELP---F 292 (361)
T ss_pred ehHhhcCchhhcchhcCCHH-HHHHHHHhcCCCCCCHHHHHHHHHHhcCH----HHHHHHHHHHHHHHHHHHhhcC---e
Confidence 99999999999999999654 44445444444447889999988888764 3466777788888888887775 4
Q ss_pred ceecCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEEecCCHHHHHHHHHHHHHHHH
Q 044773 170 SCLKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKLSMQRLKAFVD 249 (289)
Q Consensus 170 ~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ris~~~~~~e~l~~~l~~l~~~l~ 249 (289)
.+. +++++|+|++++. . +..+++..|. ++||.+.||..|+..+++++||+++ ++++++++++.|+++++
T Consensus 293 ~~~-~~~~~~i~~~~~~-~------~~~~~~~~l~-~~gv~v~~~~~f~~~~~~~lRis~~--~~~~~~~l~~~L~~il~ 361 (361)
T PRK00950 293 KVY-PSEANFVLVDVTP-M------TAKEFCEELL-KRGVIVRDCTSFRGLGDYYIRVSIG--TFEENERFLEILKEIVE 361 (361)
T ss_pred eEC-CCcceEEEEECCC-C------CHHHHHHHHH-HCCEEEeeCCccCCCCCCeEEEECC--CHHHHHHHHHHHHHHhC
Confidence 444 5667899999832 1 2256888877 5699999999887556789999998 57899999999988753
No 99
>PRK04635 histidinol-phosphate aminotransferase; Provisional
Probab=99.96 E-value=1.4e-27 Score=214.97 Aligned_cols=205 Identities=18% Similarity=0.270 Sum_probs=156.2
Q ss_pred CCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEec
Q 044773 10 LKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVYS 89 (289)
Q Consensus 10 ~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~s 89 (289)
+++|+|+++|||||||.+++.+++++|++.|+ +++||+||+|.++.. . .+..++.. ..+++++++|
T Consensus 146 ~~~~li~i~nP~NPTG~~~~~~~l~~l~~~~~--~~~vivDeay~~~~~--~--~s~~~~~~--------~~~~~iv~~S 211 (354)
T PRK04635 146 DGAKLVFICNPNNPTGTVIDRADIEQLIEMTP--DAIVVVDEAYIEFCP--E--YSVADLLA--------SYPNLVVLRT 211 (354)
T ss_pred cCCCEEEEeCCCCCCCccCCHHHHHHHHHhCC--CcEEEEeCchHhhcc--C--cchHHHHh--------hCCCEEEEec
Confidence 57899999999999999999999999998876 499999999987532 1 23334432 3467899999
Q ss_pred CccccCCCCceEEEEEecCHHHHHHHHhccccCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcC-
Q 044773 90 LSKDLGLPGFRVGAIYSNDDTVVAAATKMSSFGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEKAG- 168 (289)
Q Consensus 90 ~sK~~g~~G~r~G~i~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g- 168 (289)
|||++|++|+|+||+++++ .+.+.+......+..+.+.|.++..++.+.. .+++++..+.++++++.+.+.|++++
T Consensus 212 ~SK~~~l~GlRlG~~i~~~-~~~~~l~~~~~~~~~~~~~~~~a~~~l~~~~--~~~~~~~~~~~~~~r~~l~~~L~~~~~ 288 (354)
T PRK04635 212 LSKAFALAGARCGFTLANE-ELIEILMRVIAPYPVPLPVSEIATQALSEAG--LARMKFQVLDLNAQGARLQAALSMYGG 288 (354)
T ss_pred hHHHhhhhHHHHhhhhCCH-HHHHHHHhhcCCCCCCHHHHHHHHHHHhccc--HHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 9999999999999999964 4555555444444477788888888887643 34467778889999999999999885
Q ss_pred CceecCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEEecCCHHHHHHHHHHHHH
Q 044773 169 ISCLKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKLSMQRLKA 246 (289)
Q Consensus 169 ~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ris~~~~~~e~l~~~l~~l~~ 246 (289)
+++.++++ .|+|++++. . .++...+ .++||.+.++..+ ..++++||+++ ++++++.++++|++
T Consensus 289 ~~~~~~~g-~f~~~~~~~---~------~~~~~~l-~~~gv~v~~~~~~--~~~~~lRis~~--~~e~~~~l~~al~~ 351 (354)
T PRK04635 289 AKVLEGNG-NYVLAKFDD---V------DAVFKAL-WDAGIVARAYKDP--RLANCIRFSFS--NRAETDKLIGLIRN 351 (354)
T ss_pred ceECCCCC-cEEEEECCC---H------HHHHHHH-HHCCEEEEECCCC--CCCCeEEEEeC--CHHHHHHHHHHHHH
Confidence 77777664 688888762 1 2455544 5789999876432 23579999997 58999999888864
No 100
>PRK14808 histidinol-phosphate aminotransferase; Provisional
Probab=99.96 E-value=4e-27 Score=210.37 Aligned_cols=197 Identities=19% Similarity=0.325 Sum_probs=150.5
Q ss_pred CccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEecC
Q 044773 11 KVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVYSL 90 (289)
Q Consensus 11 ~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~s~ 90 (289)
++++++++|||||||.+++.+++++|+ +++++||+||+|.++. +. +....+. ..+++++++||
T Consensus 138 ~~~~i~i~nP~NPTG~~~s~~~l~~l~----~~~~~ii~DE~Y~~f~--~~---~~~~~~~--------~~~~vi~~~S~ 200 (335)
T PRK14808 138 EGDVVFIPNPNNPTGHVFEREEIERIL----KTGAFVALDEAYYEFH--GE---SYVDLLK--------KYENLAVIRTF 200 (335)
T ss_pred CCCEEEEeCCCCCCCCCcCHHHHHHHH----hcCCEEEEECchhhhc--CC---chHHHHH--------hCCCEEEEEec
Confidence 468999999999999999988888876 4799999999999852 22 2222322 33689999999
Q ss_pred ccccCCCCceEEEEEecCHHHHHHHHhccccCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Q 044773 91 SKDLGLPGFRVGAIYSNDDTVVAAATKMSSFGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEKAGIS 170 (289)
Q Consensus 91 sK~~g~~G~r~G~i~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~ 170 (289)
||++|++|+|+||+++++ .+.+.+......+..+.+.|.++..++... ++..+..+.++++++++.+.|++.|++
T Consensus 201 SK~~~l~GlRvG~~v~~~-~~~~~l~~~~~~~~~~~~~q~a~~~~l~~~----~~~~~~~~~~~~~r~~l~~~L~~~g~~ 275 (335)
T PRK14808 201 SKAFSLAAQRIGYVVSSE-KFIDAYNRVRLPFNVSYVSQMFAKVALDHR----EIFEERTKFIVEERERMKSALREMGYR 275 (335)
T ss_pred hhhccCcccceEEEEeCH-HHHHHHHHhcCCCCCCHHHHHHHHHHHhCH----HHHHHHHHHHHHHHHHHHHHHHHCCCE
Confidence 999999999999999965 455555555444557889999988888753 345666777888889999999998988
Q ss_pred eecCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEEecCCHHHHHHHHHHHHHH
Q 044773 171 CLKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKLSMQRLKAF 247 (289)
Q Consensus 171 ~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ris~~~~~~e~l~~~l~~l~~~ 247 (289)
+.+++| .|+|+.++.. +..++.+.+. ++||.|++ | ..++||+++. +++.+.+++.|+++
T Consensus 276 ~~~~~g-~f~~~~l~~~-------~~~~~~~~l~-~~Gi~V~~---~----~~~~Risi~~--~~~~~~~~~~l~~~ 334 (335)
T PRK14808 276 ITDSRG-NFVFIFMEKE-------EKERLLEHLR-AKNIAVRS---F----REGVRITIGK--REENDMILKELEVF 334 (335)
T ss_pred ECCCCC-eEEEEeCCCc-------cHHHHHHHHH-HCCeEEEE---C----CCCeEEecCC--HHHHHHHHHHHHhh
Confidence 887766 4778988732 1134666555 77999985 3 2589999984 78888888888754
No 101
>PRK14807 histidinol-phosphate aminotransferase; Provisional
Probab=99.96 E-value=6.9e-27 Score=210.22 Aligned_cols=208 Identities=19% Similarity=0.315 Sum_probs=151.9
Q ss_pred HHHhhhCCCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCC
Q 044773 3 QLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWN 82 (289)
Q Consensus 3 ~~~~~~~~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 82 (289)
++++.. .++|+|+++|||||||.+++.+++.+++ ++++.++|+||+|.++ + +....+ .. +..+
T Consensus 141 ~~~~~~-~~~k~v~l~~p~NPtG~~~~~~~l~~l~---~~~~~~~ivDe~y~~~-~-~~~~~~---~~--------~~~~ 203 (351)
T PRK14807 141 IKVIEK-YQPKLVFLCNPNNPTGSVIEREDIIKII---EKSRGIVVVDEAYFEF-Y-GNTIVD---VI--------NEFE 203 (351)
T ss_pred HHHhhc-cCCCEEEEeCCCCCCCCCCCHHHHHHHH---HhCCCEEEEeCcchhh-c-ccchHH---Hh--------hhCC
Confidence 344433 2789999999999999999966666655 4667889999999875 2 222211 22 1347
Q ss_pred ceEEEecCccccCCCCceEEEEEecCHHHHHHHHhccccCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHH
Q 044773 83 RVHIVYSLSKDLGLPGFRVGAIYSNDDTVVAAATKMSSFGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVS 162 (289)
Q Consensus 83 ~~i~i~s~sK~~g~~G~r~G~i~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~ 162 (289)
++++++||||.+|++|+|+||++++ +.+.+.+......+..+++.|.++..++++. ++++..+.++++++.+.+
T Consensus 204 ~vi~~~S~SK~~~~~GlRiG~~v~~-~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~-----~~~~~~~~~~~~r~~l~~ 277 (351)
T PRK14807 204 NLIVLRTLSKAFGLAGLRVGYAVAN-ENILKYLNLVKSPYNINSLSQVIALKVLRTG-----VLKERVNYILNERERLIK 277 (351)
T ss_pred CEEEEecchHhcccchhceeeeecC-HHHHHHHHHccCCCCcCHHHHHHHHHHHhHH-----HHHHHHHHHHHHHHHHHH
Confidence 8999999999999999999999995 5555556555545557889999999999753 245555677888888999
Q ss_pred HHHhc-CCceecCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEEecCCHHHHHHHH
Q 044773 163 GLEKA-GISCLKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKLSM 241 (289)
Q Consensus 163 ~l~~~-g~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ris~~~~~~e~l~~~l 241 (289)
.|.+. |+.+.+ .+|+|+|++++. ..+++..++ ++||.+.++.... ..++++||+++. +++.+.++
T Consensus 278 ~l~~~~g~~~~~-~~~~~~~i~~~~---------~~~~~~~l~-~~gV~v~~~~~~~-~~~~~iRis~~~--~~~~~~l~ 343 (351)
T PRK14807 278 ELSKIPGIKVYP-SKTNFILVKFKD---------ADYVYQGLL-ERGILVRDFSKVE-GLEGALRITVSS--CEANDYLI 343 (351)
T ss_pred HHHhCCCcEECc-CCccEEEEEcCC---------HHHHHHHHH-HCCEEEEECCCCC-CCCCeEEEEcCC--HHHHHHHH
Confidence 99876 777654 456789998862 134666665 6799998765322 235799999984 67777888
Q ss_pred HHHHHH
Q 044773 242 QRLKAF 247 (289)
Q Consensus 242 ~~l~~~ 247 (289)
+.|+++
T Consensus 344 ~~l~~~ 349 (351)
T PRK14807 344 NGLKEL 349 (351)
T ss_pred HHHHHh
Confidence 777664
No 102
>PRK05387 histidinol-phosphate aminotransferase; Provisional
Probab=99.95 E-value=7.5e-27 Score=210.07 Aligned_cols=206 Identities=17% Similarity=0.301 Sum_probs=155.8
Q ss_pred CccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEecC
Q 044773 11 KVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVYSL 90 (289)
Q Consensus 11 ~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~s~ 90 (289)
+.++++++|||||||.+++.+++++|++.++ ++++|+||+|.++ .+.. ...... ..+++++++||
T Consensus 144 ~~~~v~~~~P~NPtG~~~~~~~~~~l~~~~~--~~~livDe~y~~~--~~~~---~~~~~~--------~~~~~i~~~S~ 208 (353)
T PRK05387 144 PNGGIIFPNPNAPTGIALPLAEIERILAANP--DSVVVIDEAYVDF--GGES---AIPLID--------RYPNLLVVQTF 208 (353)
T ss_pred cCCEEEEeCCCCCCCCCCCHHHHHHHHHhCC--CcEEEEeCccccc--CCcc---hHHHHh--------hCCCEEEEEeh
Confidence 4578999999999999999999999987643 8999999999864 3322 122222 33678999999
Q ss_pred ccccCCCCceEEEEEecCHHHHHHHHhccc---cCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 044773 91 SKDLGLPGFRVGAIYSNDDTVVAAATKMSS---FGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEKA 167 (289)
Q Consensus 91 sK~~g~~G~r~G~i~~~~~~~~~~~~~~~~---~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 167 (289)
||.+|++|+|+||+++++ .+.+.+..... .+..+.+.|.++..++.+.. +.++.++.++++++.+.+.|+++
T Consensus 209 SK~~~~~GlR~G~~~~~~-~~~~~l~~~~~~~~~~~~~~~~q~~~~~~l~~~~----~~~~~~~~~~~~~~~l~~~L~~~ 283 (353)
T PRK05387 209 SKSRSLAGLRVGFAIGHP-ELIEALNRVKNSFNSYPLDRLAQAGAIAAIEDEA----YFEETRAKVIATRERLVEELEAL 283 (353)
T ss_pred hHhhcchhhhceeeecCH-HHHHHHHHhhccCCCCCcCHHHHHHHHHHhcCHH----HHHHHHHHHHHHHHHHHHHHHHC
Confidence 999999999999999954 45555444432 23467899999999997643 45677888899999999999998
Q ss_pred CCceecCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEEecCCHHHHHHHHHHHHHH
Q 044773 168 GISCLKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKLSMQRLKAF 247 (289)
Q Consensus 168 g~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ris~~~~~~e~l~~~l~~l~~~ 247 (289)
|+.+. +.+++|+|++++.. +..++++.|. ++||.+.+... ...++++||+++ ++++++.++++|+++
T Consensus 284 g~~~~-~~~~~~~~~~~~~~-------~~~~~~~~l~-~~gi~v~~~~~--~~~~~~iRis~~--~~~~~~~~~~~L~~~ 350 (353)
T PRK05387 284 GFEVL-PSKANFVFARHPSH-------DAAELAAKLR-ERGIIVRHFNK--PRIDQFLRITIG--TDEEMEALVDALKEI 350 (353)
T ss_pred CCeEC-CCcCcEEEEECCCC-------CHHHHHHHHH-HCCEEEEECCC--CCCCCeEEEEeC--CHHHHHHHHHHHHHH
Confidence 88765 55677899987631 2246777775 67999975322 123679999997 479999999999887
Q ss_pred HH
Q 044773 248 VD 249 (289)
Q Consensus 248 l~ 249 (289)
+.
T Consensus 351 ~~ 352 (353)
T PRK05387 351 LA 352 (353)
T ss_pred hh
Confidence 64
No 103
>TIGR01141 hisC histidinol-phosphate aminotransferase. Histidinol-phosphate aminotransferase is a pyridoxal-phosphate dependent enzyme.
Probab=99.95 E-value=1.2e-26 Score=208.22 Aligned_cols=205 Identities=20% Similarity=0.343 Sum_probs=161.2
Q ss_pred CCCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEe
Q 044773 9 HLKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVY 88 (289)
Q Consensus 9 ~~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~ 88 (289)
.+++++|++++|+||||.+++.+++.++++.++ +++++|+||+|.++...+ +...... ..+++++++
T Consensus 140 ~~~~~~v~l~~p~NptG~~~~~~~~~~l~~~~~-~~~~ii~D~~y~~~~~~~----~~~~~~~--------~~~~~i~~~ 206 (346)
T TIGR01141 140 DDKPKLVFLCSPNNPTGNLLSRSDIEAVLERTP-EDALVVVDEAYGEFSGEP----STLPLLA--------EYPNLIVLR 206 (346)
T ss_pred CCCCCEEEEeCCCCCCCCCCCHHHHHHHHHhCC-CCcEEEEECchhhhcCCc----cHHHHHh--------hCCCEEEEe
Confidence 457899999999999999999888888888877 799999999998654321 1122221 235689999
Q ss_pred cCccccCCCCceEEEEEecCHHHHHHHHhccccCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHhc-
Q 044773 89 SLSKDLGLPGFRVGAIYSNDDTVVAAATKMSSFGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEKA- 167 (289)
Q Consensus 89 s~sK~~g~~G~r~G~i~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~- 167 (289)
|+||.+|++|+|+||++++ +.+.+.+......+..+++.|.++..++.... +.++.+++++++++++.+.|+++
T Consensus 207 S~sK~~g~~G~r~G~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~~~~~~~~~~~~~l~~~L~~~~ 281 (346)
T TIGR01141 207 TLSKAFGLAGLRIGYAIAN-AEIIDALNKVRAPFNLSRLAQAAAIAALRDDD----FIEKTVEEINAERERLYDGLKKLP 281 (346)
T ss_pred hhhHhhhchhhhceeeecC-HHHHHHHHhccCCCCCCHHHHHHHHHHhCCHH----HHHHHHHHHHHHHHHHHHHHHhcC
Confidence 9999999899999999995 45555565554445578899999999988743 57788899999999999999988
Q ss_pred CCceecCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEEecCCHHHHHHHHHHH
Q 044773 168 GISCLKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKLSMQRL 244 (289)
Q Consensus 168 g~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ris~~~~~~e~l~~~l~~l 244 (289)
|+++. +.+|+|+|++++. + ..++...|. ++||.+.||..|+.. ++++|++++ ++++++++++.|
T Consensus 282 g~~~~-~~~g~~~~~~~~~--~------~~~~~~~L~-~~gI~v~~g~~f~~~-~~~iRls~~--~~~~i~~~~~~l 345 (346)
T TIGR01141 282 GLEVY-PSDANFVLIRFPR--D------ADALFEALL-EKGIIVRDLNSYPGL-PNCLRITVG--TREENDRFLAAL 345 (346)
T ss_pred CCEEC-CCcCCEEEEecCC--C------HHHHHHHHH-HCCeEEEeCCCcCCC-CCeEEEecC--CHHHHHHHHHHh
Confidence 88755 4456899998874 2 245777766 679999999988644 789999987 688999988776
No 104
>PRK03321 putative aminotransferase; Provisional
Probab=99.95 E-value=7.9e-27 Score=209.91 Aligned_cols=207 Identities=19% Similarity=0.266 Sum_probs=153.9
Q ss_pred CCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEec
Q 044773 10 LKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVYS 89 (289)
Q Consensus 10 ~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~s 89 (289)
+++++++++|||||||.+++.+++.++++.+ ++++++|+||+|.++.+.+....++... +..+++++++|
T Consensus 144 ~~~~~v~l~~p~NPtG~~~~~~~l~~l~~~~-~~~~~ii~De~y~~~~~~~~~~~~~~~~---------~~~~~vi~~~S 213 (352)
T PRK03321 144 DRTRLIFVCNPNNPTGTVVTPAELARFLDAV-PADVLVVLDEAYVEYVRDDDVPDGLELV---------RDHPNVVVLRT 213 (352)
T ss_pred cCCCEEEEeCCCCCcCCCcCHHHHHHHHHhC-CCCeEEEEechHHHhccCcCCCcHHHHH---------hhCCCEEEEec
Confidence 4789999999999999999988777777765 3699999999999886654332222222 23478999999
Q ss_pred CccccCCCCceEEEEEecCHHHHHHHHhccccCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 044773 90 LSKDLGLPGFRVGAIYSNDDTVVAAATKMSSFGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEKAGI 169 (289)
Q Consensus 90 ~sK~~g~~G~r~G~i~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~ 169 (289)
|||.||++|+|+||++++ +.+.+.+.+.......|++.|.++..++... ..+.+.. +.+.++++.+.+.|++.|+
T Consensus 214 ~SK~~g~~GlRiG~~v~~-~~~~~~~~~~~~~~~~s~~~q~~a~~~l~~~---~~~~~~~-~~~~~~r~~~~~~L~~~~~ 288 (352)
T PRK03321 214 FSKAYGLAGLRVGYAVGH-PEVIAALRKVAVPFSVNSLAQAAAIASLAAE---DELLERV-DAVVAERDRVRAALRAAGW 288 (352)
T ss_pred chHHhhhHHHhhhhhcCC-HHHHHHHHHhcCCCCCCHHHHHHHHHHhcCH---HHHHHHH-HHHHHHHHHHHHHHHHCCC
Confidence 999999999999999996 5555555555444558889999888888753 3333333 3444556779999988887
Q ss_pred ceecCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEEecCCHHHHHHHHHHHHHHHH
Q 044773 170 SCLKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKLSMQRLKAFVD 249 (289)
Q Consensus 170 ~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ris~~~~~~e~l~~~l~~l~~~l~ 249 (289)
.+.+ .+|+|+|++++.. ..+++..| +++||.+.| |+ ..++||+++ +.++.+.++++|.++++
T Consensus 289 ~~~~-~~g~~i~i~l~~~--------~~~~~~~l-~~~gI~v~~---~~---~~~iRi~~~--~~~~~~~~~~al~~~~~ 350 (352)
T PRK03321 289 TVPP-SQANFVWLPLGER--------TADFAAAA-AEAGVVVRP---FA---GEGVRVTIG--APEENDAFLRAARAWRA 350 (352)
T ss_pred ccCC-CCCCEEEEeCCCC--------HHHHHHHH-HHCCEEEEc---cC---CCcEEEeeC--CHHHHHHHHHHHHHHhc
Confidence 7544 4578999988531 24577776 478999987 43 346999996 58999999999988653
No 105
>PRK03967 histidinol-phosphate aminotransferase; Provisional
Probab=99.94 E-value=1.3e-25 Score=200.89 Aligned_cols=197 Identities=16% Similarity=0.275 Sum_probs=145.9
Q ss_pred CCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEec
Q 044773 10 LKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVYS 89 (289)
Q Consensus 10 ~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~s 89 (289)
+++++++++|||||||.+++.+++.+++ ++++++|+||+|.++. +. +...... ..+++++++|
T Consensus 139 ~~~~~v~~~~P~NPtG~~~~~~~l~~i~----~~~~~ii~De~y~~~~--~~---~~~~~~~--------~~~~vi~l~S 201 (337)
T PRK03967 139 KNASAVFICSPNNPTGNLQPEEEILKVL----ETGKPVVLDEAYAEFS--GK---SLIGLID--------EYPNLILLRT 201 (337)
T ss_pred cCCCEEEEeCCCCCCCCCCCHHHHHHHH----hcCCEEEEECchhhhc--cc---chHHHHh--------hCCCEEEEec
Confidence 5688999999999999999976666554 4699999999999753 21 2222222 3367999999
Q ss_pred CccccCCCCceEEEEEecCHHHHHHHHhccccCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 044773 90 LSKDLGLPGFRVGAIYSNDDTVVAAATKMSSFGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEKAGI 169 (289)
Q Consensus 90 ~sK~~g~~G~r~G~i~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~ 169 (289)
|||.||++|+|+||+++++ .+.+.+......+..+.+.|.++..++++.+ +..+.++.+.++++.+.+.|.+.
T Consensus 202 ~SK~~~l~GlRiG~iv~~~-~~i~~~~~~~~~~~~~~~~q~~~~~~l~~~~----~~~~~~~~~~~~r~~l~~~L~~~-- 274 (337)
T PRK03967 202 FSKAFGLAGIRAGYAIANE-EIIDALYRIKPPFSLNILTMKIVRLALDHYD----LIEERIDYIIKERERVRRELGEY-- 274 (337)
T ss_pred chHhhcchhhhheeeecCH-HHHHHHHhhcCCCCCCHHHHHHHHHHHhCHH----HHHHHHHHHHHHHHHHHHHhccC--
Confidence 9999999999999999964 4555555554455578899999999998643 34555555667778888888764
Q ss_pred ceecCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEEecCCHHHHHHHHHHHHHHHH
Q 044773 170 SCLKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKLSMQRLKAFVD 249 (289)
Q Consensus 170 ~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ris~~~~~~e~l~~~l~~l~~~l~ 249 (289)
..+.+++|+|++++ +...|+ ++||.+.++.. ...+++||+++. +++.+++++.|..+.+
T Consensus 275 --~~~~~~~~~~~~~~-------------~~~~l~-~~gi~v~~~~~---~~~~~~Ri~~~~--~~~~~~l~~~l~~~~~ 333 (337)
T PRK03967 275 --AYPSDANFLLLKLD-------------AYDYLL-ENGIVVRKLSG---RLEGHIRVTVGK--REENDEFIKALKEIKE 333 (337)
T ss_pred --cCCCCCcEEEEhHH-------------HHHHHH-HCCEEEEeCCC---CCCCeEEEecCC--HHHHHHHHHHHHHHHH
Confidence 34677899998763 445555 56999987653 235799999984 6777888888877766
Q ss_pred HH
Q 044773 250 SI 251 (289)
Q Consensus 250 ~~ 251 (289)
.+
T Consensus 334 ~~ 335 (337)
T PRK03967 334 GY 335 (337)
T ss_pred hc
Confidence 54
No 106
>cd00609 AAT_like Aspartate aminotransferase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary hi
Probab=99.94 E-value=4.7e-25 Score=197.19 Aligned_cols=218 Identities=27% Similarity=0.488 Sum_probs=174.7
Q ss_pred hCCCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEE
Q 044773 8 RHLKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIV 87 (289)
Q Consensus 8 ~~~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i 87 (289)
..+++++|++++|+||||.+++.+++++|+++|+++|+++|+|++|+++.+.+......... +..+.++++
T Consensus 129 ~~~~~~~v~i~~~~~~tG~~~~~~~l~~l~~~~~~~~~~~ivD~a~~~~~~~~~~~~~~~~~---------~~~~~~~~~ 199 (350)
T cd00609 129 KTPKTKLLYLNNPNNPTGAVLSEEELEELAELAKKHGILIISDEAYAELVYDGEPPPALALL---------DAYERVIVL 199 (350)
T ss_pred cCccceEEEEECCCCCCCcccCHHHHHHHHHHHHhCCeEEEEecchhhceeCCcccccccCc---------CccCcEEEE
Confidence 34689999999999999999999999999999999999999999999876654432111111 355778999
Q ss_pred ecCccccCCCCceEEEEEecCHHHHHHHHhcccc--CCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044773 88 YSLSKDLGLPGFRVGAIYSNDDTVVAAATKMSSF--GLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLE 165 (289)
Q Consensus 88 ~s~sK~~g~~G~r~G~i~~~~~~~~~~~~~~~~~--~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 165 (289)
+|++|.++.+|.++||++++++.+.+.+...... +..+...+.++..+++... ++.++.++.++++++++.+.|+
T Consensus 200 ~s~~K~~~~~g~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~~~~~~~~~~~~~~l~~~L~ 276 (350)
T cd00609 200 RSFSKTFGLPGLRIGYLIAPPEELLERLKKLLPYTTSGPSTLSQAAAAAALDDGE---EHLEELRERYRRRRDALLEALK 276 (350)
T ss_pred eecccccCCcccceEEEecCHHHHHHHHHHHHHhcccCCChHHHHHHHHHHhCcH---HHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999989999999999764666666554433 4577788999999988752 5678888999999999999999
Q ss_pred hcCCce-ecCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEEecCCHHHHHHHHHHH
Q 044773 166 KAGISC-LKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKLSMQRL 244 (289)
Q Consensus 166 ~~g~~~-~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ris~~~~~~e~l~~~l~~l 244 (289)
+.+... ..+.+|+++|++++.... .+...+++.++||.+.++..|......++|++++.. .++++.++++|
T Consensus 277 ~~~~~~~~~~~~g~~~~~~~~~~~~-------~~~~~~~l~~~gi~i~~~~~~~~~~~~~iRi~~~~~-~~~i~~~~~al 348 (350)
T cd00609 277 ELGPLVVVKPSGGFFLWLDLPEGDD-------EEFLERLLLEAGVVVRPGSAFGEGGEGFVRLSFATP-EEELEEALERL 348 (350)
T ss_pred hcCCccccCCCccEEEEEecCCCCh-------HHHHHHHHHhCCEEEecccccccCCCCeEEEEeeCC-HHHHHHHHHHh
Confidence 985443 567788999999876411 245666777889999999888755678999999875 99999999988
Q ss_pred H
Q 044773 245 K 245 (289)
Q Consensus 245 ~ 245 (289)
+
T Consensus 349 ~ 349 (350)
T cd00609 349 A 349 (350)
T ss_pred h
Confidence 5
No 107
>COG3977 Alanine-alpha-ketoisovalerate (or valine-pyruvate) aminotransferase [Amino acid transport and metabolism]
Probab=99.93 E-value=3.5e-24 Score=179.23 Aligned_cols=228 Identities=19% Similarity=0.275 Sum_probs=178.3
Q ss_pred HhhhCCCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCce
Q 044773 5 AQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRV 84 (289)
Q Consensus 5 ~~~~~~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 84 (289)
.++...++.+|+++-|.||||.+++.+++.+|-.++++||+.+|.|.+|..- |.+-.+..+.-+ ..+++
T Consensus 173 ~l~i~e~~g~ic~SRPtNPTGNVlTdeE~~kldalA~~~giPliIDnAYg~P-FP~iifsd~~~~----------w~~Ni 241 (417)
T COG3977 173 HLHIGESTGAICVSRPTNPTGNVLTDEELAKLDALARQHGIPLIIDNAYGVP-FPGIIFSDATPL----------WNENI 241 (417)
T ss_pred HcccccccceEEecCCCCCCCCcccHHHHHHHHHHhhhcCCcEEEecccCCC-CCceeccccccc----------CCCCE
Confidence 3455568899999999999999999999999999999999999999999743 444433332222 45889
Q ss_pred EEEecCccccCCCCceEEEEEecCHHHHHHHHhccccCC--CChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHH
Q 044773 85 HIVYSLSKDLGLPGFRVGAIYSNDDTVVAAATKMSSFGL--VSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVS 162 (289)
Q Consensus 85 i~i~s~sK~~g~~G~r~G~i~~~~~~~~~~~~~~~~~~~--~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~ 162 (289)
+.+.|+|| +|+||.|+|.+++ ++.+.+.+..++.... ++...++.++.+++.+.++.-.-+-.+-.|+++.+...+
T Consensus 242 ilC~SLSK-~GLPG~R~GIiIa-ne~viqaitnmn~iisLap~~~G~Aia~~mie~gdl~rlseqVIrPFY~~~~q~~~~ 319 (417)
T COG3977 242 ILCMSLSK-LGLPGSRCGIIIA-NEKVIQAITNMNGIISLAPGRMGPAIAAEMIESGDLLRLSEQVIRPFYRNRVQTTIA 319 (417)
T ss_pred EEEeehhh-cCCCCcceeEEEc-cHHHHHHHHhccceeeecCCCccHHHHHHHhhcchHHHHHHHhhhHHHHHHHHHHHH
Confidence 99999999 7899999999999 6778888887766533 556899999999999987332233355677777777777
Q ss_pred HHHhc----CCceecCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCCC-------CCeEEEEEec
Q 044773 163 GLEKA----GISCLKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTE-------PGWFRVCFAN 231 (289)
Q Consensus 163 ~l~~~----g~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~-------~~~~Ris~~~ 231 (289)
.|++. .+.+..|+|..|+|+=+.+..-. ..++...| ++.|+.++||..|.+.- ..++|+++.
T Consensus 320 ~l~~~lp~~~~~iHkpEGAIFlWLWf~dLPIt-----t~~LYq~L-Ka~Gvl~VPG~~FFpGl~~ewpH~hqC~Rmn~~- 392 (417)
T COG3977 320 ILRRYLPEYRCLIHKPEGAIFLWLWFKDLPIT-----TEELYQRL-KARGVLMVPGHYFFPGLDKEWPHTHQCMRMNYV- 392 (417)
T ss_pred HHHHhcCccceeeecCCcceeehhhhccCCCC-----HHHHHHHH-HhCeEEEecccccCCCCCCCCCCccceEEEecC-
Confidence 77654 57788999999999877664322 24566665 57799999999998622 368999998
Q ss_pred CCHHHHHHHHHHHHHHHHHHH
Q 044773 232 MSEDTLKLSMQRLKAFVDSIT 252 (289)
Q Consensus 232 ~~~e~l~~~l~~l~~~l~~~~ 252 (289)
.++++++.++.+|++.+++.-
T Consensus 393 ~~~~~ie~Gva~lae~ve~~y 413 (417)
T COG3977 393 PEPEKIEKGVAILAEEVERAY 413 (417)
T ss_pred CCHHHHHHHHHHHHHHHHHHH
Confidence 489999999999999888754
No 108
>KOG0258 consensus Alanine aminotransferase [Amino acid transport and metabolism]
Probab=99.92 E-value=1.3e-23 Score=181.31 Aligned_cols=245 Identities=20% Similarity=0.289 Sum_probs=182.9
Q ss_pred hHHHhhhCCCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCC-CCccChhhhhhccccccCC-
Q 044773 2 YQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSS-PGFVSIMEILKDRNCENTE- 79 (289)
Q Consensus 2 l~~~~~~~~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~-~~~~~~~~~~~~~~~~~~d- 79 (289)
++++. ++-+++++++.||.||||++++++.+++|+.+|++++++++.||+|++..|.. ..+.++...+-++. ...
T Consensus 207 ~~eA~-k~i~~r~lvvINPGNPTGqvls~e~ie~i~~fa~~~~l~llaDEVYQ~Nvy~~~skFhSfKKvl~emg--~~~~ 283 (475)
T KOG0258|consen 207 VDEAR-KGINPRALVVINPGNPTGQVLSEENIEGIICFAAEEGLVLLADEVYQDNVYTTGSKFHSFKKVLHEMG--NPYP 283 (475)
T ss_pred HHHHh-ccCCceEEEEECCCCccchhhcHHHHHHHHHHHHHcCeEEechHHHHhhccCCCcchHhHHHHHHHhc--CccC
Confidence 45666 55689999999999999999999999999999999999999999999988874 48899988887761 011
Q ss_pred CCCceEEEecCcccc-CCCCceEEEEEe--cCHHHHHHHHhccc-cCCCChHHHHHHHHHhC-----CchH--HHHHHHH
Q 044773 80 VWNRVHIVYSLSKDL-GLPGFRVGAIYS--NDDTVVAAATKMSS-FGLVSSQTQYLLSALLS-----DKKF--AQNYISE 148 (289)
Q Consensus 80 ~~~~~i~i~s~sK~~-g~~G~r~G~i~~--~~~~~~~~~~~~~~-~~~~~~~~q~~~~~~l~-----~~~~--~~~~~~~ 148 (289)
+.-.++.++|.||.+ |-+|.|-||+-. .++...+.+.+... -.+.+...|..+..... +..+ .......
T Consensus 284 ~~v~L~SfhSvSKGy~gECG~RGGYmEv~n~~prv~~qi~Kl~si~lc~~V~GQ~~vdl~VnPP~Pgd~Sy~~~~~Ekd~ 363 (475)
T KOG0258|consen 284 DNVSLASFHSVSKGYMGECGQRGGYMESLNRDPRVKQQIKKLASIKLCPQVSGQKLVDLVVNPPKPGDPSYDLFSSEKDG 363 (475)
T ss_pred CceEEEeeecccccceeeecccCCeeecccCChhHHHHHHHHHhhhhcCCccchhhhceecCCCCCCCcchhhhhhhhHh
Confidence 123356788999988 678999999864 23444444444433 34345566766666655 2233 1333455
Q ss_pred HHHHHHHHHHHHHHHHHhc-CCceecCCceEEEEEecCccccC------CChhhHHHHHHHHHHhcCeEEeCCCCCCCC-
Q 044773 149 NKKRLKQRHRKLVSGLEKA-GISCLKSNAGLFCWVDMRHLLSS------NTFEAEMELWKKIVYDVKLNISPGSSCHCT- 220 (289)
Q Consensus 149 ~~~~~~~~~~~l~~~l~~~-g~~~~~~~~g~~~~i~~~~~~~~------~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~- 220 (289)
....++.+.+.+.+.++++ |++|.+++|.||++.++.-+..+ .....+.-++..||++.||.++||++||..
T Consensus 364 il~~l~~ra~l~~~~~ns~~gi~cn~~qGAMY~fP~i~lP~kaie~A~~~~~~PD~FYc~~LLe~tGIcvVPGSGFGQ~~ 443 (475)
T KOG0258|consen 364 ILSSLRSRAKLTEDAFNSLEGISCNPVQGAMYLFPQISLPPKAIEAAKALGIAPDEFYCLKLLEATGICVVPGSGFGQKE 443 (475)
T ss_pred HHHHHHHHhHHHHHHHhhcCceeeccCccceeecccccCCHHHHHHHHHhCCCCcHHHHHHHHHhcCeEEecCCCCCCCC
Confidence 6778889999999999988 99999999999998776543221 222334458999999999999999999984
Q ss_pred CCCeEEEEEecCCHHHHHHHHHHHHHHHHHHHH
Q 044773 221 EPGWFRVCFANMSEDTLKLSMQRLKAFVDSITT 253 (289)
Q Consensus 221 ~~~~~Ris~~~~~~e~l~~~l~~l~~~l~~~~~ 253 (289)
+..++|.++.. +. + +.+++++++..+..+
T Consensus 444 GtyH~R~TiLp--~~-~-~~i~~~~~fH~~f~~ 472 (475)
T KOG0258|consen 444 GTYHFRTTILP--PG-L-EIIEKFKKFHAEFMD 472 (475)
T ss_pred ceeEEEEeecC--ch-h-HHHHHHHHHHHHHHH
Confidence 45689999963 22 5 888888888776644
No 109
>TIGR03576 pyridox_MJ0158 pyridoxal phosphate enzyme, MJ0158 family. Members of this archaeal protein family are pyridoxal phosphate enzymes of unknown function. Sequence similarity to SelA, a bacterial enzyme of selenocysteine biosynthesis, has led to some members being misannotated as functionally equivalent, but selenocysteine is made on tRNA in Archaea by a two-step process that does not involve a SelA homolog.
Probab=99.91 E-value=1.2e-22 Score=181.76 Aligned_cols=206 Identities=14% Similarity=0.134 Sum_probs=149.0
Q ss_pred CCCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEe
Q 044773 9 HLKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVY 88 (289)
Q Consensus 9 ~~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~ 88 (289)
.+++++|+++ ++||+|.+++.+++++|+++|+++++++|+||+|.....+.....+.... +..++++
T Consensus 134 ~~~~~lIiit-g~s~~G~v~~~~~L~~i~~la~~~~~~livDEAy~~~~~~~~~~~~~~~~------------~~divv~ 200 (346)
T TIGR03576 134 IDGTSLVVIT-GSTMDLKVVSEEDLKRVIKQAKSKEAIVLVDDASGARVRRLYGQPPALDL------------GADLVVT 200 (346)
T ss_pred CcCceEEEEE-CCCCCCcccCHHHHHHHHHHHHHcCCEEEEECCccccccccCCCCCHHHc------------CCcEEEe
Confidence 3467887775 57999999999999999999999999999999998653321111122211 2236788
Q ss_pred cCccccCCCCceEEEEEecCHHHHHHHHhccc-cC-CCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 044773 89 SLSKDLGLPGFRVGAIYSNDDTVVAAATKMSS-FG-LVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEK 166 (289)
Q Consensus 89 s~sK~~g~~G~r~G~i~~~~~~~~~~~~~~~~-~~-~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 166 (289)
||||+ ++|+|.||+++++ .+++.+..... +. +.+++.|.++..+|+... .+..++.++++.+.+.+.+++
T Consensus 201 s~SKa--laG~r~G~v~~~~-~li~~l~~~~~~~~~s~~~~~~~aa~~aL~~~~-----~~~~~~~l~~r~~~~~~~l~~ 272 (346)
T TIGR03576 201 STDKL--MDGPRGGLLAGRK-ELVDKIKSVGEQFGLEAQAPLLAAVVRALEEFE-----LSRIRDAFKRKEEVYLRLFDK 272 (346)
T ss_pred ccchh--ccccceEEEEeCH-HHHHHHHHhhcCcccCccHHHHHHHHHHHhhcc-----HHHHHHHHHHHHHHHHHHHHh
Confidence 99994 5889999999965 45555554433 22 257788888888886532 245678899998888888875
Q ss_pred cCCceecCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEEecCCHH---HHHHHHHH
Q 044773 167 AGISCLKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSED---TLKLSMQR 243 (289)
Q Consensus 167 ~g~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ris~~~~~~e---~l~~~l~~ 243 (289)
+.+.++.++ |+|++++.. +..+++..+++++||.++||..|. ..++|+||+++. +++ +.+.+++.
T Consensus 273 --~~~~~~~~~-f~~~~~~~~-------~~~~~~~~ll~~~gV~v~~~~~f~-~~~~~vRis~~~-~~~~~~~~~~~~~a 340 (346)
T TIGR03576 273 --LNVERTPTG-FVIKGVEEE-------KLIEIGLDLLRNYGIITITAVGMP-GASKTLRFDLAA-KDAERIGDDYLVEA 340 (346)
T ss_pred --CCCCcCCCe-EEEEeCCCC-------CHHHHHHHHHHhCCEEEeCCcccC-CCCCeEEEEEec-ChHHhcCHHHHHHH
Confidence 555555555 788988642 113577788889999999999884 346799999985 444 68888888
Q ss_pred HHHH
Q 044773 244 LKAF 247 (289)
Q Consensus 244 l~~~ 247 (289)
|++-
T Consensus 341 l~~~ 344 (346)
T TIGR03576 341 VKDS 344 (346)
T ss_pred HHhc
Confidence 8653
No 110
>PF12897 Aminotran_MocR: Alanine-glyoxylate amino-transferase; InterPro: IPR024551 This entry represents a family of putative aminotransferases.; PDB: 3D6K_C 3EZ1_A 3PPL_B.
Probab=99.91 E-value=1.6e-22 Score=175.59 Aligned_cols=235 Identities=17% Similarity=0.189 Sum_probs=162.0
Q ss_pred hHHHhhhCCCccEEEEeCC--CCCCccCCCHHHHHHHHHHH-HHcCCEEEEecCCCCCccCCC-C---ccChhhhhhccc
Q 044773 2 YQLAQKRHLKVKGVLVTNP--SNPLGTTMSRNELNLLVNFI-TEKNIHLISDEIYSGTVFSSP-G---FVSIMEILKDRN 74 (289)
Q Consensus 2 l~~~~~~~~~~~~i~l~~p--~NPtG~~~~~~~l~~l~~~~-~~~~~~li~Dea~~~~~~~~~-~---~~~~~~~~~~~~ 74 (289)
+|++..+++.+|.| +|.| +||||.++|.+..++|+.+- .+.++.|+.|++|.-+.+.+. . ..++.+.+.+
T Consensus 163 Ve~LV~~D~svKGi-WcVP~ySNPtG~tySde~vrrlA~m~~AA~DFRI~WDNAY~vHhL~~~~~~~~~~nil~~~~~-- 239 (425)
T PF12897_consen 163 VEELVAEDPSVKGI-WCVPKYSNPTGITYSDEVVRRLAAMKTAAPDFRIFWDNAYAVHHLYDEEPRDALLNILDACAK-- 239 (425)
T ss_dssp HHHHTHTSTTEEEE-EE-SSS-TTT-----HHHHHHHHHS--SSTT-EEEEE-TTTT-BSSSSSS------HHHHHHH--
T ss_pred HHHHHhcCCccceE-EeCCCccCCCCccCCHHHHHHHhcCCcCCcCeEEEeecCceEeeccccccchhhhHHHHHHHH--
Confidence 68888889999995 5557 89999999999999999984 457999999999987767432 1 1355555443
Q ss_pred cccCCCCCceEEEecCccccCCCCceEEEEEecCHHHHHHHHhcccc-CCCChHHHHHHHHHhCCch-HHHHHHHHHHHH
Q 044773 75 CENTEVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDTVVAAATKMSSF-GLVSSQTQYLLSALLSDKK-FAQNYISENKKR 152 (289)
Q Consensus 75 ~~~~d~~~~~i~i~s~sK~~g~~G~r~G~i~~~~~~~~~~~~~~~~~-~~~~~~~q~~~~~~l~~~~-~~~~~~~~~~~~ 152 (289)
.+..++++.+.|+||+.. +|..++++.++.+.+....+.+... ....-++|..-++++++.+ -+..++++.++.
T Consensus 240 ---AGnpdrv~~F~STSKITf-~GaGva~~aaS~~Nl~~~~~~~~~~tIgpdKvNQLRHvrff~d~~gGv~aHM~kHa~i 315 (425)
T PF12897_consen 240 ---AGNPDRVYVFASTSKITF-PGAGVAFFAASEANLAWIKKHLSVQTIGPDKVNQLRHVRFFKDAEGGVRAHMRKHAAI 315 (425)
T ss_dssp ---TT-TTSEEEEEESTTTS--TTSS-EEEEE-HHHHHHHHHHHHHH-S---HHHHHHHHHHHHSHHTHHHHHHHHHHHH
T ss_pred ---cCCCCeEEEEeccccccc-CCcceeeeecCHHHHHHHHHHhcCceeCccHHHHHHHHHHhcChhhHHHHHHHHHHHH
Confidence 357799999999999885 9999999999877777766655432 2356699999999999865 558999999999
Q ss_pred HHHHHHHHHHHHHhc-C-----CceecCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeC-CCCCCC---CCC
Q 044773 153 LKQRHRKLVSGLEKA-G-----ISCLKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISP-GSSCHC---TEP 222 (289)
Q Consensus 153 ~~~~~~~l~~~l~~~-g-----~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~p-g~~f~~---~~~ 222 (289)
++-+.+.+.+.|++. | .+|..|.||||+++++.+...+ -...++++.||.+.| |+.|.. +.+
T Consensus 316 l~PKF~~V~~~L~~~L~~~~~ia~Wt~P~GGYFIsld~~~G~Ak--------rvV~lakeAGV~LT~AGAtfPyg~DP~D 387 (425)
T PF12897_consen 316 LRPKFEAVLEILEEELGDGLGIASWTKPKGGYFISLDVLDGTAK--------RVVELAKEAGVALTPAGATFPYGKDPRD 387 (425)
T ss_dssp HHHHHHHHHHHHHHHHGTGGTSEEE---SBSS-EEEEESTT-HH--------HHHHHHHHTTEE---TTTTSGGG--TTS
T ss_pred HhhhHHHHHHHHHHhcCCCCCeeEecCCCCceEEEEecCCChHH--------HHHHHHHHhCceeCCCCCCCCCCCCCCC
Confidence 999999988888765 3 4899999999999999986543 445567788999998 555532 235
Q ss_pred CeEEEEEecCCHHHHHHHHHHHHHHHHHH
Q 044773 223 GWFRVCFANMSEDTLKLSMQRLKAFVDSI 251 (289)
Q Consensus 223 ~~~Ris~~~~~~e~l~~~l~~l~~~l~~~ 251 (289)
..|||+++.++.||++.+++.+.-+++-.
T Consensus 388 ~nIRiAPS~P~leel~~Am~~~~~cv~la 416 (425)
T PF12897_consen 388 SNIRIAPSYPSLEELETAMDVFATCVKLA 416 (425)
T ss_dssp -EEEE--SSS-HHHHHHHHHHHHHHHHHH
T ss_pred CcEEecCCCCCHHHHHHHHHHHHHHHHHH
Confidence 79999999889999999999998876643
No 111
>KOG0633 consensus Histidinol phosphate aminotransferase [Amino acid transport and metabolism]
Probab=99.89 E-value=5.2e-22 Score=163.29 Aligned_cols=222 Identities=19% Similarity=0.271 Sum_probs=169.7
Q ss_pred hHHHhhhCCCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCC
Q 044773 2 YQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVW 81 (289)
Q Consensus 2 l~~~~~~~~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 81 (289)
+-+.++.++.+|++++++|+||||..++.+++++|++.-. |.+|++||+|-++ .| ..+-..+.. .+
T Consensus 151 i~evl~~ds~iK~~F~tSPgNPtg~~ik~~di~KiLe~p~--nglVVvDEAYidF--sg--~~S~~~lV~--------kY 216 (375)
T KOG0633|consen 151 IAEVLELDSKIKCIFLTSPGNPTGSIIKEDDILKILEMPD--NGLVVVDEAYIDF--SG--VESRMKLVK--------KY 216 (375)
T ss_pred HHHHHhccccceEEEEcCCCCCCcccccHHHHHHHHhCCC--CcEEEEeeeeEee--cc--ccccchHhH--------hC
Confidence 4567788889999999999999999999999999987533 7999999999874 33 234445655 55
Q ss_pred CceEEEecCccccCCCCceEEEEEecCHHHHHHHHhccccCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHH
Q 044773 82 NRVHIVYSLSKDLGLPGFRVGAIYSNDDTVVAAATKMSSFGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLV 161 (289)
Q Consensus 82 ~~~i~i~s~sK~~g~~G~r~G~i~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~ 161 (289)
.+++++.+|||+||+.|+|+||-.. +..++..+.+.....+.|.+...++..++.+.+ ...++..+..+-+.+.++.
T Consensus 217 pNLivlqTlSKsfGLAGiRvG~~~~-~~~ia~iln~~KaPYNiS~~~s~~AL~Als~~n--~kkme~~rdaiv~er~RL~ 293 (375)
T KOG0633|consen 217 PNLIVLQTLSKSFGLAGIRVGYGAF-PLSIAEILNRAKAPYNISVAGSVAALAALSDSN--GKKMEDVRDAIVRERERLF 293 (375)
T ss_pred CceeehhhhhhhcCcceeEeecccc-cHHHHHHHHhccCCccccchhHHHHHHhcCccc--chHHHHHHHHHHHHHHHHH
Confidence 8999999999999999999999999 466788888877666688888888888888654 4557888888888889999
Q ss_pred HHHHhc-CCc-eecCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEe-CCCCCCCCCCCeEEEEEecCCHHHHH
Q 044773 162 SGLEKA-GIS-CLKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNIS-PGSSCHCTEPGWFRVCFANMSEDTLK 238 (289)
Q Consensus 162 ~~l~~~-g~~-~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~-pg~~f~~~~~~~~Ris~~~~~~e~l~ 238 (289)
..|.+. ++. +.++....|+.+++....+. -+-+...+++.+.||.|+ -|+--+ -.|++||+.+ ++|+-.
T Consensus 294 keLt~v~~~~~~~gg~daNFiLi~v~~~~n~----~akkly~q~at~~gVvVRfrgse~~--c~G~lRitvG--t~Eent 365 (375)
T KOG0633|consen 294 KELTEVPFLNDYPGGSDANFILIEVTGGDNG----MAKKLYKQDATKMGVVVRFRGSEEG--CKGYLRITVG--TPEENT 365 (375)
T ss_pred HHhhcCccccCCCCcccccEEEEEEcCCCcH----HHHHHHHHHHHhcceEEEEcCCccc--cceeEEEEcC--Ccccch
Confidence 999987 332 33344456777887754322 123466677788999987 222222 2689999998 478888
Q ss_pred HHHHHHHHHH
Q 044773 239 LSMQRLKAFV 248 (289)
Q Consensus 239 ~~l~~l~~~l 248 (289)
.+++.+++++
T Consensus 366 vL~k~~K~~l 375 (375)
T KOG0633|consen 366 VLMKCLKQFL 375 (375)
T ss_pred HHHHHHHhhC
Confidence 8999988763
No 112
>PRK13392 5-aminolevulinate synthase; Provisional
Probab=99.89 E-value=7.8e-22 Score=181.01 Aligned_cols=217 Identities=14% Similarity=0.108 Sum_probs=153.0
Q ss_pred CCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEec
Q 044773 10 LKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVYS 89 (289)
Q Consensus 10 ~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~s 89 (289)
+++++|++++|+||||.+++ +++|.++|+++++++|+||+|....++ .....+.+..+- ..+.+++++|
T Consensus 177 ~~t~~v~i~~~~n~tG~~~~---l~~i~~l~~~~~~~livDea~~~g~~g-~~g~g~~~~~~~-------~~~~div~~t 245 (410)
T PRK13392 177 DRPKLIAFESVYSMDGDIAP---IEAICDLADRYNALTYVDEVHAVGLYG-ARGGGIAERDGL-------MDRIDMIQGT 245 (410)
T ss_pred CCCEEEEEeCCCCCCccccc---HHHHHHHHHHcCCEEEEECCccccCcC-CCCCchhhhccC-------CCCCcEEEEE
Confidence 46899999999999999998 899999999999999999999843332 222222222110 1123488899
Q ss_pred CccccCCCCceEEEEEecCHHHHHHHHhccc-c--C-CCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044773 90 LSKDLGLPGFRVGAIYSNDDTVVAAATKMSS-F--G-LVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLE 165 (289)
Q Consensus 90 ~sK~~g~~G~r~G~i~~~~~~~~~~~~~~~~-~--~-~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 165 (289)
|||++|++| ||++++ +.+.+.+..... + . ..+++.+.++.++|+... .....++.++++++++.+.|+
T Consensus 246 lsK~~g~~G---G~~~~~-~~~~~~l~~~~~~~~~s~~~~~~~~~a~~aaL~~~~----~~~~~~~~~~~~~~~l~~~L~ 317 (410)
T PRK13392 246 LAKAFGCLG---GYIAAS-ADLIDFVRSFAPGFIFTTALPPAVAAGATAAIRHLK----TSQTERDAHQDRVAALKAKLN 317 (410)
T ss_pred ChHhhhccc---chhhcC-HHHHHHHHHhCcchhccCcCCHHHHHHHHHHHHHHh----cCHHHHHHHHHHHHHHHHHHH
Confidence 999999888 999985 455555544332 1 1 144466777777776422 223455778899999999999
Q ss_pred hcCCceecCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCC-CCCCeEEEEEe-cCCHHHHHHHHHH
Q 044773 166 KAGISCLKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHC-TEPGWFRVCFA-NMSEDTLKLSMQR 243 (289)
Q Consensus 166 ~~g~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~-~~~~~~Ris~~-~~~~e~l~~~l~~ 243 (289)
+.|+++.+++++++. +.++.. ....+++..|++++||.+.++..... .+..++||++. .+++++++.+++.
T Consensus 318 ~~g~~~~~~~~~~~~-i~~~~~------~~~~~~~~~L~~~~GI~v~~~~~p~~~~~~~~lRis~~~~~t~edid~l~~a 390 (410)
T PRK13392 318 ANGIPVMPSPSHIVP-VMVGDP------TLCKAISDRLMSEHGIYIQPINYPTVPRGTERLRITPTPLHDDEDIDALVAA 390 (410)
T ss_pred HcCCCCCCCCCCEEE-EEeCCH------HHHHHHHHHHHHhCCEEEeeeCCCCCCCCCceEEEEECCCCCHHHHHHHHHH
Confidence 989888777776542 333321 12246888887778999998755432 24578999994 3699999999999
Q ss_pred HHHHHHHHH
Q 044773 244 LKAFVDSIT 252 (289)
Q Consensus 244 l~~~l~~~~ 252 (289)
|.+++++..
T Consensus 391 L~~~~~~~~ 399 (410)
T PRK13392 391 LVAIWDRLE 399 (410)
T ss_pred HHHHHHHcC
Confidence 999876643
No 113
>PRK02627 acetylornithine aminotransferase; Provisional
Probab=99.89 E-value=1e-21 Score=179.46 Aligned_cols=210 Identities=19% Similarity=0.153 Sum_probs=143.3
Q ss_pred CCccEEEEeCCCCCCc-cCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEe
Q 044773 10 LKVKGVLVTNPSNPLG-TTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVY 88 (289)
Q Consensus 10 ~~~~~i~l~~p~NPtG-~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~ 88 (289)
+++++|++++++||+| .+++.+.+++|.++|+++++++|+||+|.++.+++.. .+. +... .. ..+.
T Consensus 181 ~~~~~vii~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~lI~DE~~~g~g~~g~~-~~~-~~~~--------~~---pdi~ 247 (396)
T PRK02627 181 DKTAAVMLEPIQGEGGVNPADKEYLQALRELCDENGILLILDEVQTGMGRTGKL-FAY-QHYG--------IE---PDIM 247 (396)
T ss_pred CCeEEEEEecccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhcCCCccCce-eee-hhcC--------CC---CCEE
Confidence 4789989988899999 7889999999999999999999999999987665532 121 1111 11 1145
Q ss_pred cCccccCCCCceEEEEEecCHHHHHHHHh--ccccCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 044773 89 SLSKDLGLPGFRVGAIYSNDDTVVAAATK--MSSFGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEK 166 (289)
Q Consensus 89 s~sK~~g~~G~r~G~i~~~~~~~~~~~~~--~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 166 (289)
||||.++ +|+|+||++++++ +.+.+.. ....+..+++.|.++.++++.... ++..+..++..+..++.+.+.+.+
T Consensus 248 t~sK~~~-~G~rig~~~~~~~-~~~~~~~~~~~~t~~~~~~~~~aa~~~l~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~ 324 (396)
T PRK02627 248 TLAKGLG-GGVPIGAVLAKEK-VADVFTPGDHGSTFGGNPLACAAALAVIEIIEE-EGLLENAAEVGEYLRAKLRELLEK 324 (396)
T ss_pred EEcchhh-CCcccEEEEEcHH-HHhccCCCCCCCCCCCCHHHHHHHHHHHHHHhh-ccHHHHHHHHHHHHHHHHHHHHHh
Confidence 7999999 9999999999654 5554442 222344788999998888874432 222333333333333334444333
Q ss_pred cCCceecCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEEe-cCCHHHHHHHHHHHH
Q 044773 167 AGISCLKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFA-NMSEDTLKLSMQRLK 245 (289)
Q Consensus 167 ~g~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ris~~-~~~~e~l~~~l~~l~ 245 (289)
++........|.++|+++.. +..+++..++++ ||.+.|+. .+++||+++ .++++++++++++|.
T Consensus 325 ~~~~~~~~~~g~~~~i~~~~--------~~~~~~~~l~~~-Gv~v~~~~------~~~lRi~~~~~~~~~~i~~~~~~l~ 389 (396)
T PRK02627 325 YPGIKEVRGLGLMIGIELDR--------PAAEIVKKALEK-GLLINVTG------DNVLRLLPPLIISKEEIDEAVDRLE 389 (396)
T ss_pred CCCeeeeccCcEEEEEEecC--------cHHHHHHHHHHC-CeEEeecC------CCEEEEECCcccCHHHHHHHHHHHH
Confidence 32211222346788888732 124688888755 99999863 367999985 369999999999999
Q ss_pred HHHHH
Q 044773 246 AFVDS 250 (289)
Q Consensus 246 ~~l~~ 250 (289)
+++++
T Consensus 390 ~~l~~ 394 (396)
T PRK02627 390 EVLKE 394 (396)
T ss_pred HHHHh
Confidence 98865
No 114
>PRK09064 5-aminolevulinate synthase; Validated
Probab=99.89 E-value=1.2e-21 Score=179.67 Aligned_cols=224 Identities=15% Similarity=0.117 Sum_probs=152.6
Q ss_pred hHHHhhhC--CCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCC
Q 044773 2 YQLAQKRH--LKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTE 79 (289)
Q Consensus 2 l~~~~~~~--~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d 79 (289)
++++++.. +++++|++++|+||+|.+.+ +++|.++|+++++++|+||+|+...++ +....+.+..+-
T Consensus 167 le~~l~~~~~~~~~~v~~~~v~s~~G~~~~---l~~i~~l~~~~~~~livDEa~~~G~~g-~~g~g~~~~~~~------- 235 (407)
T PRK09064 167 LEELLAAADPDRPKLIAFESVYSMDGDIAP---IAEICDLADKYNALTYLDEVHAVGMYG-PRGGGIAERDGL------- 235 (407)
T ss_pred HHHHHHhccCCCCeEEEEeCCCCCCccccC---HHHHHHHHHHcCCEEEEECCCcccccC-CCCCChHHhcCC-------
Confidence 34555432 36789999999999999998 999999999999999999999832232 222222222110
Q ss_pred CCCceEEEecCccccCCCCceEEEEEecCHHHHHHHHhc-cccC---CCChHHHHHHHHHhCCchHHHHHHHHHHHHHHH
Q 044773 80 VWNRVHIVYSLSKDLGLPGFRVGAIYSNDDTVVAAATKM-SSFG---LVSSQTQYLLSALLSDKKFAQNYISENKKRLKQ 155 (289)
Q Consensus 80 ~~~~~i~i~s~sK~~g~~G~r~G~i~~~~~~~~~~~~~~-~~~~---~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~ 155 (289)
..+.+++++||||++|+.| ||+++++ .+.+.+... ..+. ..++..+.++.+.++ ++.. ....++++++
T Consensus 236 ~~~~div~~t~sKa~g~~G---G~~~~~~-~~~~~l~~~~~~~~~t~~~~~~~~~aa~~al~---~~~~-~~~~~~~~~~ 307 (407)
T PRK09064 236 MDRIDIIEGTLAKAFGVMG---GYIAGSA-ALVDAVRSYAPGFIFTTSLPPAIAAAALASIR---HLKE-SNEERERHQE 307 (407)
T ss_pred CCCCeEEEEecchhhhccC---ceEecCH-HHHHHHHHhCccccccCcCCHHHHHHHHHHHH---HHhc-CHHHHHHHHH
Confidence 1234788999999999888 9999854 455544433 2221 234444444444443 2222 2344678889
Q ss_pred HHHHHHHHHHhcCCceecCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCC-CCCCeEEEEEec-CC
Q 044773 156 RHRKLVSGLEKAGISCLKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHC-TEPGWFRVCFAN-MS 233 (289)
Q Consensus 156 ~~~~l~~~l~~~g~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~-~~~~~~Ris~~~-~~ 233 (289)
+++++.+.|++.|+++.++.++ ++++.++.. ....++...|++++||.+.+...+.. .+..++||+++. ++
T Consensus 308 ~~~~l~~~L~~~g~~~~~~~~~-iv~i~~~~~------~~~~~l~~~L~~~~gi~v~~~~~p~~~~~~~~lRis~~~~~t 380 (407)
T PRK09064 308 RAAKLKAALDAAGIPVMPNESH-IVPVMVGDP------EKCKKASDMLLEEHGIYVQPINYPTVPRGTERLRITPTPFHT 380 (407)
T ss_pred HHHHHHHHHHHcCCCCCCCCCC-EEEEEeCCH------HHHHHHHHHHHHhCCEEEeeECCCCCCCCCceEEEEeCCCCC
Confidence 9999999999988887766655 445555431 12346788887778999998654432 234689999954 79
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 044773 234 EDTLKLSMQRLKAFVDSI 251 (289)
Q Consensus 234 ~e~l~~~l~~l~~~l~~~ 251 (289)
++|++.+++.|++++++.
T Consensus 381 ~edi~~l~~~l~~~~~~~ 398 (407)
T PRK09064 381 DEMIDHLVEALVEVWARL 398 (407)
T ss_pred HHHHHHHHHHHHHHHHHc
Confidence 999999999999987654
No 115
>TIGR01821 5aminolev_synth 5-aminolevulinic acid synthase. This model represents 5-aminolevulinic acid synthase, an enzyme for one of two routes to the heme precursor 5-aminolevulinate. The protein is a pyridoxal phosphate-dependent enzyme related to 2-amino-3-ketobutyrate CoA tranferase and 8-amino-7-oxononanoate synthase. This enzyme appears restricted to the alpha Proteobacteria and mitochondrial derivatives.
Probab=99.89 E-value=2.5e-21 Score=177.20 Aligned_cols=224 Identities=12% Similarity=0.099 Sum_probs=153.6
Q ss_pred hHHHhhhC--CCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCC
Q 044773 2 YQLAQKRH--LKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTE 79 (289)
Q Consensus 2 l~~~~~~~--~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d 79 (289)
+++++... +++++|++++|+||+|.+.+ +++|.++|+++++++|+||+|+...+ ++......+..+ -
T Consensus 166 l~~~l~~~~~~~~~~v~~e~~~~~~G~~~~---l~~i~~l~~~~~~~livDea~~~G~~-g~~g~g~~~~~~-------~ 234 (402)
T TIGR01821 166 LEKLLQSVDPNRPKIIAFESVYSMDGDIAP---IEEICDLADKYGALTYLDEVHAVGLY-GPRGGGIAERDG-------L 234 (402)
T ss_pred HHHHHHhccCCCCeEEEEcCCCCCCCCccC---HHHHHHHHHHcCCEEEEeCccccccc-CCCCCccchhcc-------C
Confidence 34555432 25789999999999999998 89999999999999999999983323 222222222111 0
Q ss_pred CCCceEEEecCccccCCCCceEEEEEecCHHHHHHHHhcc-cc---CCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHH
Q 044773 80 VWNRVHIVYSLSKDLGLPGFRVGAIYSNDDTVVAAATKMS-SF---GLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQ 155 (289)
Q Consensus 80 ~~~~~i~i~s~sK~~g~~G~r~G~i~~~~~~~~~~~~~~~-~~---~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~ 155 (289)
..+.+++++||||++|++| ||+++++ .+.+.+.... .+ ...++..+.++.+.++.. .+. ...++.+++
T Consensus 235 ~~~~div~~t~sKa~g~~G---G~i~~~~-~~~~~l~~~~~~~~~t~~~~~~~~aaa~aaL~~~---~~~-~~~~~~~~~ 306 (402)
T TIGR01821 235 MHRIDIIEGTLAKAFGVVG---GYIAASR-KLIDAIRSYAPGFIFTTSLPPAIAAGATASIRHL---KES-QDLRRAHQE 306 (402)
T ss_pred CCCCeEEEEechhhhccCC---ceeecCH-HHHHHHHHhCcCceecCcCCHHHHHHHHHHHHHh---hcC-HHHHHHHHH
Confidence 1234688899999999888 9999854 4555554322 21 124556666666666532 222 445566778
Q ss_pred HHHHHHHHHHhcCCceecCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCC-CCCCeEEEEEec-CC
Q 044773 156 RHRKLVSGLEKAGISCLKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHC-TEPGWFRVCFAN-MS 233 (289)
Q Consensus 156 ~~~~l~~~l~~~g~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~-~~~~~~Ris~~~-~~ 233 (289)
+.+++.+.|+++|+++.++.+++ +.+.++.. ....++...|++++||.+.+..+... .+..++||++.. ++
T Consensus 307 ~~~~l~~~L~~~g~~~~~~~~~i-~~i~~~~~------~~a~~~~~~L~~~~Gi~v~~~~~p~~~~g~~~lRis~~~~~t 379 (402)
T TIGR01821 307 NVKRLKNLLEALGIPVIPNPSHI-VPVIIGDA------ALCKKVSDLLLNKHGIYVQPINYPTVPRGTERLRITPTPAHT 379 (402)
T ss_pred HHHHHHHHHHHcCCCcCCCCCCE-EEEEeCCH------HHHHHHHHHHHhcCCEEEEeECCCCCCCCCceEEEEeCCCCC
Confidence 88999999998888877777664 44555421 12245777777778999988654432 234689999943 79
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 044773 234 EDTLKLSMQRLKAFVDSI 251 (289)
Q Consensus 234 ~e~l~~~l~~l~~~l~~~ 251 (289)
+++++++++.|++++++.
T Consensus 380 ~edi~~~~~~l~~~~~~~ 397 (402)
T TIGR01821 380 DKMIDDLVEALLLVWDRL 397 (402)
T ss_pred HHHHHHHHHHHHHHHHHc
Confidence 999999999999988764
No 116
>PLN02822 serine palmitoyltransferase
Probab=99.89 E-value=3.5e-21 Score=179.30 Aligned_cols=224 Identities=14% Similarity=0.113 Sum_probs=158.7
Q ss_pred Cc-cEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEec
Q 044773 11 KV-KGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVYS 89 (289)
Q Consensus 11 ~~-~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~s 89 (289)
++ ++|+++.++|++|.+.+ +++|+++|++||+++|+||+|+...++ .......+..+- +..+.+++++|
T Consensus 244 ~~~~~Ivve~i~~~~G~i~~---L~~i~~l~~k~~~~LIvDEa~s~gvlG-~~G~G~~e~~~v------~~~~~dii~~s 313 (481)
T PLN02822 244 KLRRYIVVEAIYQNSGQIAP---LDEIVRLKEKYRFRVLLDESNSFGVLG-KSGRGLSEHFGV------PIEKIDIITAA 313 (481)
T ss_pred CCcEEEEEecCCCCCCCccC---HHHHHHHHHHcCCEEEEECCccccccC-CCCCChHHHcCC------CCCCCeEEEec
Confidence 44 68788888999999999 899999999999999999999955453 222333443220 12356789999
Q ss_pred CccccCCCCceEEEEEecCHHHHHHHHhc-ccc-CCC--ChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044773 90 LSKDLGLPGFRVGAIYSNDDTVVAAATKM-SSF-GLV--SSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLE 165 (289)
Q Consensus 90 ~sK~~g~~G~r~G~i~~~~~~~~~~~~~~-~~~-~~~--~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 165 (289)
|||++|++| ||++++++ +.+..... ..+ ++. ++..+.++.++++.. +. ..+.++.++++.+++.+.|+
T Consensus 314 ~sKalg~~G---G~i~g~~~-ii~~~~~~~~~~~fsa~lPp~~~~Aa~~aL~~l---~~-~~~~~~~l~~~~~~l~~~L~ 385 (481)
T PLN02822 314 MGHALATEG---GFCTGSAR-VVDHQRLSSSGYVFSASLPPYLASAAITAIDVL---ED-NPSVLAKLKENIALLHKGLS 385 (481)
T ss_pred chhhhhhCC---eEEEcCHH-HHHHHHhcCCceeeccccCHHHHHHHHHHHHHH---Hh-CHHHHHHHHHHHHHHHHHHH
Confidence 999999889 99999654 44444432 222 222 345556655566421 22 35678899999999999999
Q ss_pred hc-CCceecCCceEEEEEecCccccC--CChhhHHHHHHHHHHhcCeEEeCCC--CCCC-CCCCeEEEEEec-CCHHHHH
Q 044773 166 KA-GISCLKSNAGLFCWVDMRHLLSS--NTFEAEMELWKKIVYDVKLNISPGS--SCHC-TEPGWFRVCFAN-MSEDTLK 238 (289)
Q Consensus 166 ~~-g~~~~~~~~g~~~~i~~~~~~~~--~~~~~~~~~~~~ll~~~gi~v~pg~--~f~~-~~~~~~Ris~~~-~~~e~l~ 238 (289)
+. |+.+..+.+++++++.+++.... .......+++..|++++||.+.|+. .|+. ..+.++|++++. +++++++
T Consensus 386 ~~~g~~~~~~~~spi~~l~l~~~~~~~~~~~~~~~~~~~~Ll~e~GV~v~~~~~~~~~~~~~~~~lRi~is~~~t~edI~ 465 (481)
T PLN02822 386 DIPGLSIGSNTLSPIVFLHLEKSTGSAKEDLSLLEHIADRMLKEDSVLVVVSKRSTLDKCRLPVGIRLFVSAGHTESDIL 465 (481)
T ss_pred hcCCcccCCCCCCCEEEEEeCCCcccccchHHHHHHHHHHHHhcCCEEEEeeCCCCcCCCCCCCcEEEEECCCCCHHHHH
Confidence 87 88888778889999998643111 0001124688899878899999763 3332 124579999853 7999999
Q ss_pred HHHHHHHHHHHHHH
Q 044773 239 LSMQRLKAFVDSIT 252 (289)
Q Consensus 239 ~~l~~l~~~l~~~~ 252 (289)
+++++|++++.+..
T Consensus 466 ~~~~~l~~~~~~~~ 479 (481)
T PLN02822 466 KASESLKRVAASVL 479 (481)
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999887754
No 117
>TIGR00858 bioF 8-amino-7-oxononanoate synthase. This model represents 8-amino-7-oxononanoate synthase, the BioF protein of biotin biosynthesis. This model is based on a careful phylogenetic analysis to separate members of this family from 2-amino-3-ketobutyrate and other related pyridoxal phosphate-dependent enzymes. In several species, including Staphylococcus and Coxiella, a candidate 8-amino-7-oxononanoate synthase is confirmed by location in the midst of a biotin biosynthesis operon but scores below the trusted cutoff of this model.
Probab=99.88 E-value=3e-21 Score=173.71 Aligned_cols=218 Identities=14% Similarity=0.088 Sum_probs=150.2
Q ss_pred hHHHhhhC--CCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCC
Q 044773 2 YQLAQKRH--LKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTE 79 (289)
Q Consensus 2 l~~~~~~~--~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d 79 (289)
+++.++.. ++++++++++++||||...+ +++|.++|+++++++|+||+|....++.. ..+...... .+
T Consensus 135 l~~~~~~~~~~~~~~v~~~~~~~~~G~~~~---~~~i~~l~~~~~~~li~De~~~~~~~~~~-~~~~~~~~~------~~ 204 (360)
T TIGR00858 135 LERLLEKNRGERRKLIVTDGVFSMDGDIAP---LPQLVALAERYGAWLMVDDAHGTGVLGED-GRGTLEHFG------LK 204 (360)
T ss_pred HHHHHHHcccCCCeEEEEeCCccCCCCCcC---HHHHHHHHHHcCcEEEEECcccccCcCCC-CCchHHhcC------CC
Confidence 34555543 35788888888999999888 89999999999999999999985444322 122222211 02
Q ss_pred CCCceEEEecCccccCCCCceEEEEEecCHHHHHHHHh-cccc--C-CCChHHHHHHHHHhCCchHHHHHHHHHHHHHHH
Q 044773 80 VWNRVHIVYSLSKDLGLPGFRVGAIYSNDDTVVAAATK-MSSF--G-LVSSQTQYLLSALLSDKKFAQNYISENKKRLKQ 155 (289)
Q Consensus 80 ~~~~~i~i~s~sK~~g~~G~r~G~i~~~~~~~~~~~~~-~~~~--~-~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~ 155 (289)
..+++++++||||++|.+| ||++++++ +.+.+.. ...+ . ..++..+.++..+++.. ...++.++++++
T Consensus 205 ~~~~~i~i~s~sK~~~~~g---G~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~----~~~~~~~~~~~~ 276 (360)
T TIGR00858 205 PEPVDIQVGTLSKALGSYG---AYVAGSQA-LIDYLINRARTLIFSTALPPAVAAAALAALELI----QEEPWRREKLLA 276 (360)
T ss_pred ccCCcEEEEechhhhhccC---cEEEcCHH-HHHHHHHhCccceecCCCCHHHHHHHHHHHHHH----hhCHHHHHHHHH
Confidence 3467899999999999777 99998644 4444432 2221 1 13444444555555422 223566889999
Q ss_pred HHHHHHHHHHhcCCceecCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCC-CCCCeEEEEEec-CC
Q 044773 156 RHRKLVSGLEKAGISCLKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHC-TEPGWFRVCFAN-MS 233 (289)
Q Consensus 156 ~~~~l~~~l~~~g~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~-~~~~~~Ris~~~-~~ 233 (289)
+++++.+.|++.++++.++ ++.++|+.++... +..++...|+ ++||.+.++..++. .+.+++||+++. ++
T Consensus 277 ~~~~l~~~L~~~~~~~~~~-~~~~~~~~~~~~~------~~~~~~~~l~-~~gI~v~~~~~~~~~~~~~~iRis~~~~~~ 348 (360)
T TIGR00858 277 LIARLRAGLEALGFTLMPS-CTPIVPVIIGDNA------SALALAEELQ-QQGIFVGAIRPPTVPAGTSRLRLTLSAAHT 348 (360)
T ss_pred HHHHHHHHHHHcCCccCCC-CCCEEEEEeCCHH------HHHHHHHHHH-HCCeeEeeeCCCCCCCCCceEEEEEcCCCC
Confidence 9999999999888776644 4568888876421 2346777776 66999998776643 235689999964 69
Q ss_pred HHHHHHHHHHHH
Q 044773 234 EDTLKLSMQRLK 245 (289)
Q Consensus 234 ~e~l~~~l~~l~ 245 (289)
+++++.++++|+
T Consensus 349 ~~~i~~~l~~l~ 360 (360)
T TIGR00858 349 PGDIDRLAEALK 360 (360)
T ss_pred HHHHHHHHHhhC
Confidence 999999998874
No 118
>PRK05093 argD bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein; Reviewed
Probab=99.88 E-value=2.8e-21 Score=176.95 Aligned_cols=209 Identities=17% Similarity=0.195 Sum_probs=147.7
Q ss_pred CCccEEEEeCCCCCCccCC--CHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEE
Q 044773 10 LKVKGVLVTNPSNPLGTTM--SRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIV 87 (289)
Q Consensus 10 ~~~~~i~l~~p~NPtG~~~--~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i 87 (289)
+++++|+++ |.||+|-++ +.+.+++|+++|++||+++|+||+|.++.++|... +. ... +...-+
T Consensus 183 ~~~aaiiie-p~~~~gg~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~g~~g~~~-~~-~~~-----------~~~pdi 248 (403)
T PRK05093 183 DHTCAVVVE-PIQGEGGVIPATPEFLQGLRELCDQHNALLIFDEVQTGMGRTGDLF-AY-MHY-----------GVTPDI 248 (403)
T ss_pred CCeEEEEEe-cccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCCCccch-hh-hhc-----------CCCCCE
Confidence 357776666 878887665 88999999999999999999999999886666422 21 111 111226
Q ss_pred ecCccccCCCCceEEEEEecCHHHHHHHHhc--cccCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044773 88 YSLSKDLGLPGFRVGAIYSNDDTVVAAATKM--SSFGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLE 165 (289)
Q Consensus 88 ~s~sK~~g~~G~r~G~i~~~~~~~~~~~~~~--~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 165 (289)
.||||+++ +|+|+||+++++ .+.+.+... ...+..+++.|.++.+.|+... -.+..+.++++.+++.+.|+
T Consensus 249 ~s~sK~l~-~G~rig~vv~~~-~i~~~l~~~~~~~t~~~~~~~~~aa~a~L~~~~-----~~~~~~~~~~~~~~l~~~L~ 321 (403)
T PRK05093 249 LTSAKALG-GGFPIGAMLTTA-EIASHFKVGTHGSTYGGNPLACAVAEAVFDIIN-----TPEVLEGVKARRQRFVDGLQ 321 (403)
T ss_pred EEeccccc-CCcceEEEEEcH-HHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHHh-----hccHHHHHHHHHHHHHHHHH
Confidence 79999999 999999999965 444444321 2223468888988888665321 12445778888888999998
Q ss_pred hcC----CceecCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEEec-CCHHHHHHH
Q 044773 166 KAG----ISCLKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFAN-MSEDTLKLS 240 (289)
Q Consensus 166 ~~g----~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ris~~~-~~~e~l~~~ 240 (289)
+++ +....+..|+++|+.++.... ....+++..++ +.||.+.|+ +.+++||+++. +++++++++
T Consensus 322 ~~~~~~~~~~~~~~~G~~~~~~l~~~~~----~~~~~~~~~l~-~~Gv~v~~~------g~~~lRl~~~~~~~~~~i~~~ 390 (403)
T PRK05093 322 KINQKYGVFSEIRGMGLLIGAELKPQYK----GRARDFLNAAA-EEGVMVLVA------GPDVLRFAPSLVIEEADIDEG 390 (403)
T ss_pred HHHhhCCCeEeEeeCceEEEEEecCcch----hHHHHHHHHHH-HCCeEEecC------CCCEEEEeCCCCCCHHHHHHH
Confidence 763 222344568899998864211 12346888877 459999874 24689998754 599999999
Q ss_pred HHHHHHHHHH
Q 044773 241 MQRLKAFVDS 250 (289)
Q Consensus 241 l~~l~~~l~~ 250 (289)
+++|.++++.
T Consensus 391 ~~~l~~~l~~ 400 (403)
T PRK05093 391 LARFEKAVAK 400 (403)
T ss_pred HHHHHHHHHH
Confidence 9999998864
No 119
>PRK13238 tnaA tryptophanase/L-cysteine desulfhydrase, PLP-dependent; Provisional
Probab=99.88 E-value=6e-21 Score=176.49 Aligned_cols=233 Identities=16% Similarity=0.186 Sum_probs=159.2
Q ss_pred hHHHhhhC--CCccEEEEeCCCCCCc-cCCCHHHHHHHHHHHHHcCCEEEEecCCCC--CccC-----CCCccChhhhhh
Q 044773 2 YQLAQKRH--LKVKGVLVTNPSNPLG-TTMSRNELNLLVNFITEKNIHLISDEIYSG--TVFS-----SPGFVSIMEILK 71 (289)
Q Consensus 2 l~~~~~~~--~~~~~i~l~~p~NPtG-~~~~~~~l~~l~~~~~~~~~~li~Dea~~~--~~~~-----~~~~~~~~~~~~ 71 (289)
+++++... +++++|++++|+|||| .+++.+++++|.++|+++|++||+|+++.. ..|. +....++.++.
T Consensus 166 Le~~i~~~~~~~tk~Ivl~~p~NptGG~v~s~~~l~~I~~ia~~~gi~li~Daa~~~e~a~f~~~~e~g~~~~si~~i~- 244 (460)
T PRK13238 166 LEALIEEVGAENVPFIVMTITNNSAGGQPVSMANLRAVYEIAKKYGIPVVIDAARFAENAYFIKQREPGYKDKSIKEIA- 244 (460)
T ss_pred HHHHHhhcCCCceeEEEEecCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEECcchhhhhhhhhhccccccCCCHHHHh-
Confidence 34555432 3699999999999997 999999999999999999999999997742 2221 22334444432
Q ss_pred ccccccCCCCCceEEEecCccccCCCCceE------EEEEecCHHHHHHHHhcc----c---cCCCChHHHHHHHHHhCC
Q 044773 72 DRNCENTEVWNRVHIVYSLSKDLGLPGFRV------GAIYSNDDTVVAAATKMS----S---FGLVSSQTQYLLSALLSD 138 (289)
Q Consensus 72 ~~~~~~~d~~~~~i~i~s~sK~~g~~G~r~------G~i~~~~~~~~~~~~~~~----~---~~~~~~~~q~~~~~~l~~ 138 (289)
..++|++|.+.++|+|+ |+++++++.+.+.++... + ++..+...|.+++..+.+
T Consensus 245 -------------~~~~s~~D~~~~Sg~K~g~~~~GG~i~~~d~~l~~~~~~~~~~~~g~~t~~g~~~~~~~Ala~~l~e 311 (460)
T PRK13238 245 -------------REMFSYADGLTMSAKKDAMVNIGGLLCFRDEDLFTECRTLCILYEGFPTYGGLAGRDMEALAVGLYE 311 (460)
T ss_pred -------------hhhcccCcEEEEecccCCCCcceeEEEcChHHHHHHhhhcccccCCcccccCcHHHHHHHHHhhHHH
Confidence 22344444444444443 566666566666555442 2 222233457777776654
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceecCCceEEEEEecCccccC--CChhhHHHHHHHHHHhcCeEEeCCCC
Q 044773 139 KKFAQNYISENKKRLKQRHRKLVSGLEKAGISCLKSNAGLFCWVDMRHLLSS--NTFEAEMELWKKIVYDVKLNISPGSS 216 (289)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~g~~~~i~~~~~~~~--~~~~~~~~~~~~ll~~~gi~v~pg~~ 216 (289)
..- +++...+.+ ++++|.+.|.+.|+++..|.||+|+++++...... ..-....+++..|+++.||.+.|++.
T Consensus 312 ~~~-~~~~~~~~~----~~~~l~~~L~~~G~~~~~p~Gg~~v~~d~~~~~~~~~~~~~~~~~~a~~L~~e~GV~~~~~~~ 386 (460)
T PRK13238 312 GMD-EDYLAYRIG----QVEYLGEGLEEAGVPIQTPAGGHAVFVDAGKFLPHIPAEQFPAQALACELYLEAGIRGVEIGS 386 (460)
T ss_pred hhC-hHHHHHHHH----HHHHHHHHHHHCCCCeEccCCceEEEEEchhcCCCCCCCCCchHHHHHHHHHHcCeeeecccc
Confidence 211 333444322 56889999999999999999999999999764221 01112367999999999999999998
Q ss_pred CCCCC-----------CCeEEEEEec--CCHHHHHHHHHHHHHHHHHHHH
Q 044773 217 CHCTE-----------PGWFRVCFAN--MSEDTLKLSMQRLKAFVDSITT 253 (289)
Q Consensus 217 f~~~~-----------~~~~Ris~~~--~~~e~l~~~l~~l~~~l~~~~~ 253 (289)
|.... ...+|+++.. -+.++++.+.++|+.+.+....
T Consensus 387 f~~~~~~~~~~~~~~~~~~~Rla~~rr~~~~~~~~~~~~~l~~~~~~~~~ 436 (460)
T PRK13238 387 LLLGRDPKTGEQLPAPAELLRLAIPRRVYTQSHMDYVAEALKAVKENRES 436 (460)
T ss_pred eecccCCCCccccCCccceEEEecccccCCHHHHHHHHHHHHHHHHhHhh
Confidence 86422 3689999964 4899999999999997755443
No 120
>PLN02483 serine palmitoyltransferase
Probab=99.87 E-value=1.5e-20 Score=175.44 Aligned_cols=218 Identities=12% Similarity=0.110 Sum_probs=149.4
Q ss_pred cEEEEeCC-CCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEecCc
Q 044773 13 KGVLVTNP-SNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVYSLS 91 (289)
Q Consensus 13 ~~i~l~~p-~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~s~s 91 (289)
++++++++ .|++|.+.+ +++|+++|+++++++|+||+|+...+ +.......++.+. +..+.+++++|||
T Consensus 241 k~livve~v~s~~G~~~~---l~~I~~la~~~~~~livDEa~s~g~~-G~~G~g~~~~~~v------~~~~~dI~~~SfS 310 (489)
T PLN02483 241 KIIVIVEGIYSMEGELCK---LPEIVAVCKKYKAYVYLDEAHSIGAV-GKTGRGVCELLGV------DPADVDIMMGTFT 310 (489)
T ss_pred eEEEEECCCCCCCCcccC---HHHHHHHHHHcCCEEEEECcCccCcc-CCCCCchHHhcCC------CcccCcEEEEecc
Confidence 66777776 699999988 99999999999999999999984323 3322233333221 3456789999999
Q ss_pred cccCCCCceEEEEEecCHHHHHHHHhcc-c--cC-CCChHHHHHHHHHhC---CchHHHHHHHHHHHHHHHHHHHHHHHH
Q 044773 92 KDLGLPGFRVGAIYSNDDTVVAAATKMS-S--FG-LVSSQTQYLLSALLS---DKKFAQNYISENKKRLKQRHRKLVSGL 164 (289)
Q Consensus 92 K~~g~~G~r~G~i~~~~~~~~~~~~~~~-~--~~-~~~~~~q~~~~~~l~---~~~~~~~~~~~~~~~~~~~~~~l~~~l 164 (289)
|++|++| ||+++++ .+.+.+.... . +. ..++....++.+.++ ..+- .+...+.++.++++++++++.|
T Consensus 311 Ks~g~~G---G~i~~~~-~li~~l~~~~~~~~~~~~~~p~~~~~~~aaL~~l~~~~g-~~~~~~~~~~l~~~~~~l~~~L 385 (489)
T PLN02483 311 KSFGSCG---GYIAGSK-ELIQYLKRTCPAHLYATSMSPPAVQQVISAIKVILGEDG-TNRGAQKLAQIRENSNFFRSEL 385 (489)
T ss_pred hhcccCc---eEEEcCH-HHHHHHHHhCccccccCCcCHHHHHHHHHHHHHHHhCcc-ccchHHHHHHHHHHHHHHHHHH
Confidence 9999888 9999854 4555554432 1 22 123322223333332 1110 1234556788999999999999
Q ss_pred HhcCCceecCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCC--CCCCCeEEEEEec-CCHHHHHHHH
Q 044773 165 EKAGISCLKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCH--CTEPGWFRVCFAN-MSEDTLKLSM 241 (289)
Q Consensus 165 ~~~g~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~--~~~~~~~Ris~~~-~~~e~l~~~l 241 (289)
+++|+.+.++.+++.+|+.+.... ...+++..|+ ++||.+.| ..|. +...+.+||+++. ++++++++++
T Consensus 386 ~~~G~~v~~~~~sp~~~l~l~~~~------~~~~~~~~Ll-~~GI~v~~-~~fp~~p~~~~~vRi~isa~~t~edId~~l 457 (489)
T PLN02483 386 QKMGFEVLGDNDSPVMPIMLYNPA------KIPAFSRECL-KQNVAVVV-VGFPATPLLLARARICISASHSREDLIKAL 457 (489)
T ss_pred HHCCCcccCCCCCCEEEEEECCHH------HHHHHHHHHH-HCCcEEee-eCCCCCCCCCceEEEEeCCCCCHHHHHHHH
Confidence 999988777666667766654322 1235888887 56999997 4442 2334789999964 7999999999
Q ss_pred HHHHHHHHHHHH
Q 044773 242 QRLKAFVDSITT 253 (289)
Q Consensus 242 ~~l~~~l~~~~~ 253 (289)
++|+++.+....
T Consensus 458 ~~L~~~~~~~~~ 469 (489)
T PLN02483 458 EVISEVGDLVGI 469 (489)
T ss_pred HHHHHHHHHhCc
Confidence 999999876544
No 121
>TIGR01822 2am3keto_CoA 2-amino-3-ketobutyrate coenzyme A ligase. This model represents a narrowly defined clade of animal and bacterial (almost exclusively Proteobacterial) 2-amino-3-ketobutyrate--CoA ligase. This enzyme can act in threonine catabolism. The closest homolog from Bacillus subtilis, and sequences like it, may be functionally equivalent but were not included in the model because of difficulty in finding reports of function.
Probab=99.87 E-value=1.7e-20 Score=171.24 Aligned_cols=214 Identities=14% Similarity=0.122 Sum_probs=143.4
Q ss_pred CccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEecC
Q 044773 11 KVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVYSL 90 (289)
Q Consensus 11 ~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~s~ 90 (289)
++++|++.+++||||.+.+ +++|+++|+++|+++|+||+|... +.+....+..+...- ..+.+++++|+
T Consensus 170 ~~~~v~~~~v~~~tG~~~~---l~~i~~la~~~~~~li~De~~~~g-~~~~~~~~~~~~~~~-------~~~~di~~~s~ 238 (393)
T TIGR01822 170 RHRLIATDGVFSMDGVIAP---LDEICDLADKYDALVMVDECHATG-FLGPTGRGSHELCGV-------MGRVDIITGTL 238 (393)
T ss_pred CceEEEEeCCccCCCCcCC---HHHHHHHHHHcCCEEEEECCcccc-CcCCCCCchHHhcCC-------CCCCeEEEEEC
Confidence 6788888888999999988 899999999999999999999632 323222222222210 12467899999
Q ss_pred ccccCCCCceEEEEEecCHHHHHHHHhc-ccc--CC-CChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 044773 91 SKDLGLPGFRVGAIYSNDDTVVAAATKM-SSF--GL-VSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEK 166 (289)
Q Consensus 91 sK~~g~~G~r~G~i~~~~~~~~~~~~~~-~~~--~~-~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 166 (289)
||+++ |+|.||+++++ .+.+.+... ..+ .. .++..+.++..+++ . .+..++.+++++++++++.+.|++
T Consensus 239 sK~l~--g~r~G~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~a~~~al~---~-~~~~~~~~~~~~~~~~~l~~~L~~ 311 (393)
T TIGR01822 239 GKALG--GASGGFTTARK-EVVELLRQRSRPYLFSNSLPPAVVGASIKVLE---M-LEASNELRDRLWANTRYFRERMEA 311 (393)
T ss_pred hHHhh--CCCcEEEEeCH-HHHHHHHHhCccceecCCCCHHHHHHHHHHHH---H-HhcCHHHHHHHHHHHHHHHHHHHH
Confidence 99974 57899999964 444444332 222 11 22333333344442 2 123466788899999999999988
Q ss_pred cCCceecCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCC--CCCCeEEEEEec-CCHHHHHHHHHH
Q 044773 167 AGISCLKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHC--TEPGWFRVCFAN-MSEDTLKLSMQR 243 (289)
Q Consensus 167 ~g~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~--~~~~~~Ris~~~-~~~e~l~~~l~~ 243 (289)
.|+.+.++.+. ++.+.++.. .+..+++..|++ .||.+. +..|.. .+...+|++++. ++++++++++++
T Consensus 312 ~g~~~~~~~~~-~~~i~~~~~------~~~~~l~~~L~~-~gI~v~-~~~~~~~~~~~~~iRis~~~~~t~edi~~~~~~ 382 (393)
T TIGR01822 312 AGFDIKPADHP-IIPVMLYDA------VLAQRFARRLLE-EGIYVT-GFFYPVVPKGQARIRVQISAAHTEEQLDRAVEA 382 (393)
T ss_pred cCCCCCCCCCC-EEEEEeCCH------HHHHHHHHHHHH-CCeeEe-eeCCCCCCCCCceEEEEECCCCCHHHHHHHHHH
Confidence 88877655554 333444432 123467887774 499997 554532 234579999954 689999999999
Q ss_pred HHHHHHHH
Q 044773 244 LKAFVDSI 251 (289)
Q Consensus 244 l~~~l~~~ 251 (289)
|.++.++.
T Consensus 383 l~~~~~~~ 390 (393)
T TIGR01822 383 FTRIGREL 390 (393)
T ss_pred HHHHHHHh
Confidence 99887643
No 122
>PRK01278 argD acetylornithine transaminase protein; Provisional
Probab=99.87 E-value=1.3e-20 Score=171.83 Aligned_cols=208 Identities=18% Similarity=0.190 Sum_probs=141.0
Q ss_pred CCccEEEEeCCCCCCc-cCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEe
Q 044773 10 LKVKGVLVTNPSNPLG-TTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVY 88 (289)
Q Consensus 10 ~~~~~i~l~~p~NPtG-~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~ 88 (289)
+++++|+++.++||+| .+++.+++++|.++|+++|+++|+||+|.++.+++..+. . +.. +...-+.
T Consensus 174 ~~~~avivep~~~~~G~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~g~~g~~~~-~-~~~-----------~~~pdi~ 240 (389)
T PRK01278 174 PNTAAILIEPIQGEGGIRPAPDEFLKGLRQLCDENGLLLIFDEVQCGMGRTGKLFA-H-EWA-----------GVTPDIM 240 (389)
T ss_pred CCeEEEEEecccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCCccee-e-ccc-----------CCCCCEE
Confidence 3688888886688998 889999999999999999999999999998766554221 1 111 1111256
Q ss_pred cCccccCCCCceEEEEEecCHHHHHHHHhcc--ccCCCChHHHHHHHHHhCC---chHHHHHHHHHHHHHHHHHHHHHHH
Q 044773 89 SLSKDLGLPGFRVGAIYSNDDTVVAAATKMS--SFGLVSSQTQYLLSALLSD---KKFAQNYISENKKRLKQRHRKLVSG 163 (289)
Q Consensus 89 s~sK~~g~~G~r~G~i~~~~~~~~~~~~~~~--~~~~~~~~~q~~~~~~l~~---~~~~~~~~~~~~~~~~~~~~~l~~~ 163 (289)
||||.++ +|+|+||++++++ +.+.+.... ..+..|++.|.++.+.++. .++ .++.+++.+.++++.+.+.+.
T Consensus 241 t~sK~l~-~G~~ig~~~~~~~-~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~l~~~~~-~~~~~~~~~~l~~~l~~l~~~ 317 (389)
T PRK01278 241 AVAKGIG-GGFPLGACLATEE-AAKGMTPGTHGSTYGGNPLAMAVGNAVLDVILAPGF-LDNVQRMGLYLKQKLEGLVDR 317 (389)
T ss_pred EEehhcc-CCcceEEEEEcHH-HHhccCCCCCCCCCCccHHHHHHHHHHHHHHhhhHH-HHHHHHHHHHHHHHHHHHHhh
Confidence 8999998 9999999999654 444443322 2233778888888666653 222 344455555555554444322
Q ss_pred HHhcCCceecCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEEec-CCHHHHHHHHH
Q 044773 164 LEKAGISCLKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFAN-MSEDTLKLSMQ 242 (289)
Q Consensus 164 l~~~g~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ris~~~-~~~e~l~~~l~ 242 (289)
+.+. +....+ .|+++++++.. + ..+++..|+++ ||.+.|+. .+++||+++. +++++++++++
T Consensus 318 ~~~~-~~~v~g-~G~~~~i~~~~--~------~~~~~~~l~~~-GV~~~p~~------~~~lR~~p~~~~~~~~i~~~l~ 380 (389)
T PRK01278 318 FPDV-IEEVRG-KGLLLGLKCVV--P------NRDLVQALRDE-GLLTVGAG------DNVVRLLPPLIITEEEIDEALE 380 (389)
T ss_pred CCCc-eeeEec-ccEEEEEEEec--C------HHHHHHHHHHC-CeEEeecC------CCEEEEeCCcccCHHHHHHHHH
Confidence 2111 222233 46777777643 1 24688888755 99999873 4689999853 69999999999
Q ss_pred HHHHHHHH
Q 044773 243 RLKAFVDS 250 (289)
Q Consensus 243 ~l~~~l~~ 250 (289)
+|.+++++
T Consensus 381 ~l~~~l~~ 388 (389)
T PRK01278 381 RLERAAES 388 (389)
T ss_pred HHHHHHHh
Confidence 99988764
No 123
>PRK06939 2-amino-3-ketobutyrate coenzyme A ligase; Provisional
Probab=99.86 E-value=3.1e-20 Score=169.46 Aligned_cols=214 Identities=12% Similarity=0.106 Sum_probs=141.8
Q ss_pred CccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEecC
Q 044773 11 KVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVYSL 90 (289)
Q Consensus 11 ~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~s~ 90 (289)
++++|+..+.+||+|...+ +++|.++|+++++++|+||+|....+.... ........ . ..+.+++++||
T Consensus 174 ~~~~v~~~~v~~~~G~~~~---~~~l~~la~~~~~~li~De~~~~g~~~~~~-~~~~~~~~-~------~~~~~i~~~S~ 242 (397)
T PRK06939 174 RHKLIATDGVFSMDGDIAP---LPEICDLADKYDALVMVDDSHAVGFVGENG-RGTVEHFG-V------MDRVDIITGTL 242 (397)
T ss_pred CCeEEEEecCcCCCCCcCC---HHHHHHHHHHhCCEEEEECcccccCcCCCC-CCHHHHcC-C------CCCCcEEEEEC
Confidence 6777776667899998665 999999999999999999999632122111 11111111 0 12457999999
Q ss_pred ccccCCCCceEEEEEecCHHHHHHHHhc-ccc--CC-CChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 044773 91 SKDLGLPGFRVGAIYSNDDTVVAAATKM-SSF--GL-VSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEK 166 (289)
Q Consensus 91 sK~~g~~G~r~G~i~~~~~~~~~~~~~~-~~~--~~-~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 166 (289)
||+++ |.|.||++++++. .+.+... ..+ .. .++..+.++..+++.. . ...+.++.++++++++.+.|++
T Consensus 243 sK~~~--g~r~G~v~~~~~~-~~~l~~~~~~~~~~~~~~~~~~~a~~~al~~~---~-~~~~~~~~~~~~~~~l~~~L~~ 315 (397)
T PRK06939 243 GKALG--GASGGYTAGRKEV-IDWLRQRSRPYLFSNSLAPAIVAASIKVLELL---E-ESDELRDRLWENARYFREGMTA 315 (397)
T ss_pred HHHhC--ccCceEEEeCHHH-HHHHHHhCccccccCCCCHHHHHHHHHHHHHH---h-cCHHHHHHHHHHHHHHHHHHHH
Confidence 99994 4588999996554 4444332 211 11 2233334333333321 1 2356778899999999999998
Q ss_pred cCCceecCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCC--CCCCeEEEEEec-CCHHHHHHHHHH
Q 044773 167 AGISCLKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHC--TEPGWFRVCFAN-MSEDTLKLSMQR 243 (289)
Q Consensus 167 ~g~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~--~~~~~~Ris~~~-~~~e~l~~~l~~ 243 (289)
.++++.++.++++. +.++.. .+..+++..|+++ ||.+.++. |+. .+.+++|++++. ++++++++++++
T Consensus 316 ~~~~~~~~~~~~~~-~~~~~~------~~~~~~~~~L~~~-gI~v~~~~-~~~~~~~~~~iRi~~~~~~~~~~i~~~l~~ 386 (397)
T PRK06939 316 AGFTLGPGEHPIIP-VMLGDA------KLAQEFADRLLEE-GVYVIGFS-FPVVPKGQARIRTQMSAAHTKEQLDRAIDA 386 (397)
T ss_pred cCCCcCCCCCCEEE-EEECCH------HHHHHHHHHHHHC-CceEeeeC-CCCCCCCCceEEEEECCCCCHHHHHHHHHH
Confidence 88877767676654 334321 1235688888755 99998654 432 234689999954 799999999999
Q ss_pred HHHHHHHH
Q 044773 244 LKAFVDSI 251 (289)
Q Consensus 244 l~~~l~~~ 251 (289)
|++++++.
T Consensus 387 L~~~~~~~ 394 (397)
T PRK06939 387 FEKVGKEL 394 (397)
T ss_pred HHHHHHHh
Confidence 99988765
No 124
>TIGR02539 SepCysS Sep-tRNA:Cys-tRNA synthase. Aminoacylation of tRNA(Cys) with Cys, and cysteine biosynthesis in the process, happens in Methanocaldococcus jannaschii and several other archaea by misacylation of tRNA(Cys) with O-phosphoserine (Sep), followed by modification of the phosphoserine to cysteine. In some species, direct tRNA-cys aminoacylation also occurs but this pathway is required for Cys biosynthesis. Members of this protein catalyze the second step in this two step pathway, using pyridoxal phosphate and a sulfur donor to synthesize Cys from Sep while attached to the tRNA.
Probab=99.86 E-value=5.2e-20 Score=166.75 Aligned_cols=208 Identities=15% Similarity=0.181 Sum_probs=136.4
Q ss_pred CccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEecC
Q 044773 11 KVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVYSL 90 (289)
Q Consensus 11 ~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~s~ 90 (289)
++++|++++|+||+|...+ +++|.++|+++|+++|+|++|... ....+...+ +.+++++|+
T Consensus 146 ~~~lv~~~~p~~~~G~~~~---l~~i~~la~~~~~~livDea~~~g----~~~~~~~~~------------~~di~v~s~ 206 (370)
T TIGR02539 146 PPVLALLTHVDGEYGNLPD---AGKVAKVCREKGVPLLLNCAYTVG----RMPVSAKEI------------GADFIVGSG 206 (370)
T ss_pred CcEEEEEECCCCCCccccC---HHHHHHHHHHcCCeEEEECccccC----CcCCCHHHc------------CCCEEEeeC
Confidence 6789999999999999888 888999999999999999999852 211122111 345778999
Q ss_pred ccccCCCCceEEEEEecCHHHHHHHHhccccCCCC----------hHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHH
Q 044773 91 SKDLGLPGFRVGAIYSNDDTVVAAATKMSSFGLVS----------SQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKL 160 (289)
Q Consensus 91 sK~~g~~G~r~G~i~~~~~~~~~~~~~~~~~~~~~----------~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l 160 (289)
||+++ +|.|+||+++++ .+.+.+......+..+ ...+.++...+.. ..+++++..+.++. .+++
T Consensus 207 sK~~~-~~g~~G~l~~~~-~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~---~~~~l~~~~~~~~~-~~~l 280 (370)
T TIGR02539 207 HKSMA-ASGPCGVLGMSE-EWEDIVLRKSRYSPVKEVELLGCTSRGAPIVTMMASFPH---VVERVKRWDEEVKK-TRWF 280 (370)
T ss_pred ccccc-CCCCEEEEEECH-HHHhhhcccccCCccceeeeecccccccHHHHHHHHHHH---HHHHHHHHHHHHHH-HHHH
Confidence 99998 677899999965 4455444433221111 1133333333432 13344444455555 4689
Q ss_pred HHHHHhcCCcee--cCCceEEEEEecCcccc--CCChhhHHHHHHHHHHhcCeE-EeCCCCCCCCCCCeEEEEEecCCHH
Q 044773 161 VSGLEKAGISCL--KSNAGLFCWVDMRHLLS--SNTFEAEMELWKKIVYDVKLN-ISPGSSCHCTEPGWFRVCFANMSED 235 (289)
Q Consensus 161 ~~~l~~~g~~~~--~~~~g~~~~i~~~~~~~--~~~~~~~~~~~~~ll~~~gi~-v~pg~~f~~~~~~~~Ris~~~~~~e 235 (289)
++.|+++|+++. .+..+.|++++++.... .........+...|. ++||. +.++ .++++|+++...+++
T Consensus 281 ~~~L~~~g~~~~~~~~s~t~~v~~~~~~~~~~~~~~~~~~~~~~~~L~-e~GI~~ir~~------~~~~iRis~~~~t~e 353 (370)
T TIGR02539 281 VAELEDIGFIQLGQKPKEHDLVKFETPGFHEIAQKHKRRGYFLYEELK-KRGIHGIRSG------QTKYFKLSVYGLTKE 353 (370)
T ss_pred HHHHHhCCcEEEccCCCcCceEEEECCchhHHhhhhccccHHHHHHHH-hCCCccccCC------cceEEEEEecCCCHH
Confidence 999999998753 34556777788763100 000011234566655 66997 5542 246899997335999
Q ss_pred HHHHHHHHHHHHHHH
Q 044773 236 TLKLSMQRLKAFVDS 250 (289)
Q Consensus 236 ~l~~~l~~l~~~l~~ 250 (289)
++++++++|++++++
T Consensus 354 ~i~~l~~~L~~~~~~ 368 (370)
T TIGR02539 354 QVEYVVDSFEEIVEE 368 (370)
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999999988764
No 125
>PRK08088 4-aminobutyrate aminotransferase; Validated
Probab=99.86 E-value=5.1e-20 Score=169.61 Aligned_cols=217 Identities=12% Similarity=0.106 Sum_probs=150.8
Q ss_pred CccEEEEeCC--CCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEe
Q 044773 11 KVKGVLVTNP--SNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVY 88 (289)
Q Consensus 11 ~~~~i~l~~p--~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~ 88 (289)
++.+ ++..| +|+++..++++.+++|+++|+++++++|+||+|.++.+.+.. .++ + ..+.+..+.
T Consensus 199 ~~aa-vi~Epi~~~~G~~~~~~~~~~~l~~l~~~~~~~lI~Dev~~g~g~~g~~-~~~-~-----------~~~~~pdi~ 264 (425)
T PRK08088 199 DIAA-IIIEPVQGEGGFYAASPAFMQRLRALCDEHGIMLIADEVQTGAGRTGTL-FAM-E-----------QMGVAADLT 264 (425)
T ss_pred ceEE-EEECcccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCcch-hHH-h-----------hcCCCCCEE
Confidence 4555 55556 688888899999999999999999999999999986554431 111 1 113345589
Q ss_pred cCccccCCCCceEEEEEecCHHHHHHHHhc--cccCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 044773 89 SLSKDLGLPGFRVGAIYSNDDTVVAAATKM--SSFGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEK 166 (289)
Q Consensus 89 s~sK~~g~~G~r~G~i~~~~~~~~~~~~~~--~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 166 (289)
||||.++ +|+|+||+++++ .+.+.+... ...+..+++.|.++..+|+.... ++.++..++..+++++.+.+.+.+
T Consensus 265 s~sK~l~-~G~rig~v~~~~-~~~~~~~~~~~~~t~~~~~~~~~a~~~~l~~~~~-~~~~~~~~~~~~~~~~~l~~l~~~ 341 (425)
T PRK08088 265 TFAKSIA-GGFPLAGVTGRA-EVMDAIAPGGLGGTYAGNPIACAAALAVLKVFEQ-ENLLQKANALGEKLKDGLLAIAEK 341 (425)
T ss_pred EEecccc-CCCcceeeEecH-HHHhhcCCCCCCCCCCcCHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999998 999999999954 444444322 22334788999999999987655 566666666666655555555555
Q ss_pred cCCc-eecCCceEEEEEecCcccc--CCChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEEe-cCCHHHHHHHHH
Q 044773 167 AGIS-CLKSNAGLFCWVDMRHLLS--SNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFA-NMSEDTLKLSMQ 242 (289)
Q Consensus 167 ~g~~-~~~~~~g~~~~i~~~~~~~--~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ris~~-~~~~e~l~~~l~ 242 (289)
.+.. ...+. |+++|+.+.+..+ ........++...++ +.||.+.|+..+ .+.+||+++ .+++++++++++
T Consensus 342 ~~~~~~v~g~-G~~~~l~l~~~~~~~~p~~~~~~~l~~~~~-~~Gv~~~~~~~~----~~~iRl~~~~~~t~~ei~~~i~ 415 (425)
T PRK08088 342 HPEIGDVRGL-GAMIAIELFEDGDHSKPNAKLTAQIVARAR-DKGLILLSCGPY----YNVLRILVPLTIEDAQIRQGLE 415 (425)
T ss_pred CCCeEEEecc-ceEEEEEEecCCCCCCCCHHHHHHHHHHHH-hCCCEEecCCCC----CCEEEEECCCCcCHHHHHHHHH
Confidence 4431 12222 7889999854321 011123345777766 569988876544 368999997 478999999999
Q ss_pred HHHHHHHH
Q 044773 243 RLKAFVDS 250 (289)
Q Consensus 243 ~l~~~l~~ 250 (289)
+|.++++.
T Consensus 416 ~l~~~l~~ 423 (425)
T PRK08088 416 IIAQCFDE 423 (425)
T ss_pred HHHHHHHh
Confidence 99998875
No 126
>TIGR01825 gly_Cac_T_rel pyridoxal phosphate-dependent acyltransferase, putative. This model represents an enzyme subfamily related to three known enzymes; it appears closest to glycine C-acteyltransferase, shows no overlap with it in species distribution, and may share that function. The three closely related enzymes are glycine C-acetyltransferase (2-amino-3-ketobutyrate coenzyme A ligase), 5-aminolevulinic acid synthase, and 8-amino-7-oxononanoate synthase. All transfer the R-group (acetyl, succinyl, or 6-carboxyhexanoyl) from coenzyme A to an amino acid (Gly, Gly, Ala, respectively), with release of CO2 for the latter two reactions.
Probab=99.86 E-value=6.9e-20 Score=166.67 Aligned_cols=220 Identities=15% Similarity=0.114 Sum_probs=148.9
Q ss_pred HHHhhhC--CCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCC
Q 044773 3 QLAQKRH--LKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEV 80 (289)
Q Consensus 3 ~~~~~~~--~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 80 (289)
++.++.. +++++|++++++||||.+.+ +++|.++|+++|+++|+||+|..+.++.... ....... . .
T Consensus 153 ~~~l~~~~~~~~~~v~~~~v~~~tG~~~~---~~~i~~l~~~~~~~li~De~~~~~~~~~~~~-~~~~~~~-~------~ 221 (385)
T TIGR01825 153 DRVLRENPSYGKKLIVTDGVFSMDGDVAP---LPEIVELAERYGAVTYVDDAHGSGVMGEAGR-GTVHHFG-L------E 221 (385)
T ss_pred HHHHHhhccCCCeEEEEecCCcCCCCccC---HHHHHHHHHHhCCEEEEECcccccCcCCCCC-ccHhhcC-C------C
Confidence 4444433 36788888888999999988 8999999999999999999997654432111 1111111 0 2
Q ss_pred CCceEEEecCccccCCCCceEEEEEecCHHHHHHHHhcc-cc--CC-CChHHHHHHHHHhCCchHHHHHHHHHHHHHHHH
Q 044773 81 WNRVHIVYSLSKDLGLPGFRVGAIYSNDDTVVAAATKMS-SF--GL-VSSQTQYLLSALLSDKKFAQNYISENKKRLKQR 156 (289)
Q Consensus 81 ~~~~i~i~s~sK~~g~~G~r~G~i~~~~~~~~~~~~~~~-~~--~~-~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~ 156 (289)
.+.+++++||||++|++| ||+++++ .+.+.+.... .+ .+ .+++.+.++.++++.. .++ .+..++++++
T Consensus 222 ~~~~i~~~s~sK~~~~~g---G~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~---~~~-~~~~~~~~~~ 293 (385)
T TIGR01825 222 DKVDIQVGTLSKAIGVVG---GYAAGHK-ELIEYLKNRARPFLFSTAQPPAVVAALAAAVDEL---QRS-PELMERLWDN 293 (385)
T ss_pred cCCcEEEEeccHHhhcCC---CEEecCH-HHHHHHHHhCccccccCCCCHHHHHHHHHHHHHH---hcC-HHHHHHHHHH
Confidence 467899999999998777 9999854 4444443322 12 22 3456666766666532 111 2345667778
Q ss_pred HHHHHHHHHhcCCceecCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCC--CCCCeEEEEEe-cCC
Q 044773 157 HRKLVSGLEKAGISCLKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHC--TEPGWFRVCFA-NMS 233 (289)
Q Consensus 157 ~~~l~~~l~~~g~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~--~~~~~~Ris~~-~~~ 233 (289)
++++.+.|.+.|+++..+++.++ ++.++.. .+..+++..|+++ ||.+. +..|+. .+..++|+++. .++
T Consensus 294 ~~~l~~~L~~~g~~~~~~~~~~~-~~~~~~~------~~~~~~~~~L~~~-gi~v~-~~~~~~~~~~~~~iRi~~~~~~~ 364 (385)
T TIGR01825 294 TRFFKAGLGKLGYDTGGSETPIT-PVVIGDE------KAAQEFSRRLFDE-GIFAQ-SIVFPTVPRGTARIRNIPTAEHT 364 (385)
T ss_pred HHHHHHHHHHcCCCCCCCCCCEE-EEEECCH------HHHHHHHHHHHHC-CcEEc-ccCCCCCCCCCceEEEEEcCCCC
Confidence 89999999988888877776543 3444321 1224688888866 99985 444442 24478999984 379
Q ss_pred HHHHHHHHHHHHHHHHH
Q 044773 234 EDTLKLSMQRLKAFVDS 250 (289)
Q Consensus 234 ~e~l~~~l~~l~~~l~~ 250 (289)
++++++++++|++++++
T Consensus 365 ~e~i~~~~~~l~~~~~~ 381 (385)
T TIGR01825 365 KDDLDQALDAYEKVGKE 381 (385)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999999998864
No 127
>PRK03244 argD acetylornithine aminotransferase; Provisional
Probab=99.86 E-value=2.7e-20 Score=170.24 Aligned_cols=208 Identities=15% Similarity=0.105 Sum_probs=148.0
Q ss_pred CCccEEEEeCCCCCCccCCCHH-HHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEe
Q 044773 10 LKVKGVLVTNPSNPLGTTMSRN-ELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVY 88 (289)
Q Consensus 10 ~~~~~i~l~~p~NPtG~~~~~~-~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~ 88 (289)
+++++|++++++||+|.+++.+ .+++|.++|+++|+++|+||+|.+++++|..+ . .+... ...+ +.
T Consensus 182 ~~~~aviiep~~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~gr~g~~~-~-~~~~~-------~~pD----i~ 248 (398)
T PRK03244 182 DDTAAVFLEPIQGEAGVVPPPAGYLAAAREITDRHGALLVLDEVQTGIGRTGAWF-A-HQHDG-------VTPD----VV 248 (398)
T ss_pred CCeEEEEEecccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCcccchHH-h-hhhhC-------CCCC----EE
Confidence 4688989988899999999765 59999999999999999999999876655422 1 11111 0112 45
Q ss_pred cCccccCCCCceEEEEEecCHHHHHHHHh--ccccCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 044773 89 SLSKDLGLPGFRVGAIYSNDDTVVAAATK--MSSFGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEK 166 (289)
Q Consensus 89 s~sK~~g~~G~r~G~i~~~~~~~~~~~~~--~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 166 (289)
+|||++| +|+|+||++++++ +.+.+.. ....+..|++.+.++.++|+.... .+..++++++.+++.+.|++
T Consensus 249 t~sK~l~-~G~~ig~~~~~~~-~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~~~~-----~~~~~~~~~~~~~l~~~L~~ 321 (398)
T PRK03244 249 TLAKGLG-GGLPIGACLAFGP-AADLLTPGLHGSTFGGNPVACAAALAVLDTIAS-----EGLLENAERLGEQLRAGIEA 321 (398)
T ss_pred EEchhhh-CCcccEEEEEcHH-HHhhccCCCCcCCCCCCHHHHHHHHHHHHHHHh-----ccHHHHHHHHHHHHHHHHHh
Confidence 8899999 8999999999655 5554443 222334788899988888763221 13445666677778888887
Q ss_pred cCCce--ecCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEEec-CCHHHHHHHHHH
Q 044773 167 AGISC--LKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFAN-MSEDTLKLSMQR 243 (289)
Q Consensus 167 ~g~~~--~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ris~~~-~~~e~l~~~l~~ 243 (289)
+++.. .....|.++|+.++.. ...++...++ ++||.+.|.. ...+|++++. +++++++.++++
T Consensus 322 ~~~~~~~~v~g~g~~~~i~~~~~-------~~~~~~~~l~-~~Gv~~~~~~------~~~iR~~p~~~~t~~~i~~~~~~ 387 (398)
T PRK03244 322 LGHPLVDHVRGRGLLLGIVLTAP-------VAKAVEAAAR-EAGFLVNAVA------PDVIRLAPPLIITDAQVDAFVAA 387 (398)
T ss_pred cCCCceeeEeeccEEEEEEEecc-------HHHHHHHHHH-HCCeEEeecC------CCEEEEECCCcCCHHHHHHHHHH
Confidence 64321 2223578889988532 1245677766 6699998742 3689999865 799999999999
Q ss_pred HHHHHHHH
Q 044773 244 LKAFVDSI 251 (289)
Q Consensus 244 l~~~l~~~ 251 (289)
|.+++.+.
T Consensus 388 l~~~l~~~ 395 (398)
T PRK03244 388 LPAILDAA 395 (398)
T ss_pred HHHHHHhc
Confidence 99998754
No 128
>PRK13393 5-aminolevulinate synthase; Provisional
Probab=99.86 E-value=8.8e-20 Score=167.22 Aligned_cols=215 Identities=14% Similarity=0.123 Sum_probs=148.9
Q ss_pred CccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEecC
Q 044773 11 KVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVYSL 90 (289)
Q Consensus 11 ~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~s~ 90 (289)
++++|++++|+||+|.+.+ +++|.++|+++++++|+||+|+...++ +....+.+..+ . ..+.+++++||
T Consensus 177 ~~~~v~~~~v~~~~G~~~~---l~~i~~l~~~~~~~livDea~~~g~~g-~~G~g~~~~~~-~------~~~~~i~~~tl 245 (406)
T PRK13393 177 RPKLVAFESVYSMDGDIAP---IAEICDVAEKHGAMTYLDEVHAVGLYG-PRGGGIAEREG-L------ADRLTIIEGTL 245 (406)
T ss_pred CCEEEEEcCCCCCCCchhC---HHHHHHHHHHcCCEEEEECCccccccC-CCCCchhhhcC-C------CCCCeEEEEeC
Confidence 5788899999999999999 999999999999999999999833232 22222222211 0 12346778999
Q ss_pred ccccCCCCceEEEEEecCHHHHHHHHhcc-cc---CCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 044773 91 SKDLGLPGFRVGAIYSNDDTVVAAATKMS-SF---GLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEK 166 (289)
Q Consensus 91 sK~~g~~G~r~G~i~~~~~~~~~~~~~~~-~~---~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 166 (289)
||++|++| ||++++ +.+.+.+.... .+ ...++..+.++.+.++.. .... ..+..++++.+++.+.|++
T Consensus 246 sKa~g~~G---G~~~~~-~~~~~~l~~~~~~~~~t~~~~p~~~aa~~aaL~~~---~~~~-~~~~~~~~~~~~l~~~L~~ 317 (406)
T PRK13393 246 AKAFGVMG---GYITGS-AALCDFIRSFASGFIFTTSLPPAVAAGALASVRHL---KASS-AERERHQDRVARLRARLDK 317 (406)
T ss_pred chhhcccC---ceeeCC-HHHHHHHHHhCcCceecCccCHHHHHHHHHHHHHH---hhCH-HHHHHHHHHHHHHHHHHHH
Confidence 99999888 999985 44555554432 22 224555666666666542 2222 2345678888999999988
Q ss_pred cCCceecCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCC-CCCCeEEEEEec-CCHHHHHHHHHHH
Q 044773 167 AGISCLKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHC-TEPGWFRVCFAN-MSEDTLKLSMQRL 244 (289)
Q Consensus 167 ~g~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~-~~~~~~Ris~~~-~~~e~l~~~l~~l 244 (289)
.|+++.++.+.++. +.+... ....++...|++++||.+.++.+... .+..++||++.. ++++|+++++++|
T Consensus 318 ~g~~~~~~~~~i~~-v~~~~~------~~~~~l~~~L~~~~Gi~v~~~~~p~~p~g~~~iRis~~~~~t~edid~l~~~l 390 (406)
T PRK13393 318 AGIPHLPNPSHIVP-VMVGDP------VLCKQISDELLDRYGIYVQPINYPTVPRGTERLRITPSPLHTDADIEHLVQAL 390 (406)
T ss_pred cCCCcCCCCCCeEE-EEeCCH------HHHHHHHHHHHHhCCEEEEeECCCCCCCCCceEEEEECCCCCHHHHHHHHHHH
Confidence 88877766666543 444321 12346778887667999998755432 244789999954 7999999999999
Q ss_pred HHHHHHH
Q 044773 245 KAFVDSI 251 (289)
Q Consensus 245 ~~~l~~~ 251 (289)
++++++.
T Consensus 391 ~~~~~~~ 397 (406)
T PRK13393 391 SEIWARL 397 (406)
T ss_pred HHHHHhc
Confidence 9988764
No 129
>PRK05958 8-amino-7-oxononanoate synthase; Reviewed
Probab=99.86 E-value=5.6e-20 Score=167.06 Aligned_cols=220 Identities=15% Similarity=0.143 Sum_probs=146.8
Q ss_pred hHHHhhhCC-CccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCC
Q 044773 2 YQLAQKRHL-KVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEV 80 (289)
Q Consensus 2 l~~~~~~~~-~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 80 (289)
+++++...+ .+.++++.+++||+|...+ +++|.++|+++|+++|+||+|....++... ........ . +.
T Consensus 158 l~~~i~~~~~~~~lvi~~~~~~~~G~~~~---l~~i~~ia~~~~~~li~De~~~~g~~~~~g-~~~~~~~~-~-----~~ 227 (385)
T PRK05958 158 LEALLAKWRAGRALIVTESVFSMDGDLAP---LAELVALARRHGAWLLVDEAHGTGVLGPQG-RGLAAEAG-L-----AG 227 (385)
T ss_pred HHHHHHhccCCCeEEEEEecccCCCCcCC---HHHHHHHHHHhCCEEEEECcccccccCCCC-CchHHhhC-C-----CC
Confidence 355554432 3455566667999998877 999999999999999999999754343111 11111110 0 23
Q ss_pred CCceEEEecCccccCCCCceEEEEEecCHHHHHHHHhc-ccc---CCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHH
Q 044773 81 WNRVHIVYSLSKDLGLPGFRVGAIYSNDDTVVAAATKM-SSF---GLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQR 156 (289)
Q Consensus 81 ~~~~i~i~s~sK~~g~~G~r~G~i~~~~~~~~~~~~~~-~~~---~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~ 156 (289)
.+++++++|+||.+|.+| ||+++++ .+.+.+... ..+ ...++....++..+++... .. .+..+++.++
T Consensus 228 ~~~~i~~~s~sK~~~~~G---g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~aa~~aal~~~~---~~-~~~~~~~~~~ 299 (385)
T PRK05958 228 EPDVILVGTLGKALGSSG---AAVLGSE-TLIDYLINRARPFIFTTALPPAQAAAARAALRILR---RE-PERRERLAAL 299 (385)
T ss_pred CCceEEEEechhhcccCC---cEEEcCH-HHHHHHHHhCccceecCCCCHHHHHHHHHHHHHHh---cC-HHHHHHHHHH
Confidence 467899999999999777 9998864 444443322 122 1134444444555555322 11 4567889999
Q ss_pred HHHHHHHHHhcCCceecCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCC-CCCCCeEEEEEec-CCH
Q 044773 157 HRKLVSGLEKAGISCLKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCH-CTEPGWFRVCFAN-MSE 234 (289)
Q Consensus 157 ~~~l~~~l~~~g~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~-~~~~~~~Ris~~~-~~~ 234 (289)
++++.+.|++.++++.++.++ ++++.++.. .+..++...|. ++||.+.++..+. +.+++++||+++. +++
T Consensus 300 ~~~l~~~L~~~~~~~~~~~~~-~~~~~~~~~------~~~~~~~~~l~-~~gI~v~~~~~~~~~~~~~~lRis~~~~~~~ 371 (385)
T PRK05958 300 IARLRAGLRALGFQLMDSQSA-IQPLIVGDN------ERALALAAALQ-EQGFWVGAIRPPTVPAGTSRLRITLTAAHTE 371 (385)
T ss_pred HHHHHHHHHHcCCCcCCCCCC-EEEEEeCCH------HHHHHHHHHHH-HCCceEecccCCCCCCCCceEEEEecCCCCH
Confidence 999999999888887766665 556776532 22346777776 5699999865443 2245799999963 699
Q ss_pred HHHHHHHHHHHHH
Q 044773 235 DTLKLSMQRLKAF 247 (289)
Q Consensus 235 e~l~~~l~~l~~~ 247 (289)
+++++++++|+++
T Consensus 372 ~~i~~~l~~l~~~ 384 (385)
T PRK05958 372 ADIDRLLEALAEA 384 (385)
T ss_pred HHHHHHHHHHHhc
Confidence 9999999999875
No 130
>cd06454 KBL_like KBL_like; this family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD corresponds to serine palmitoyltransferase (SPT), 5-aminolevulinate synthase (ALAS), 8-amino-7-oxononanoate synthase (AONS), and 2-amino-3-ketobutyrate CoA ligase (KBL). SPT is responsible for the condensation of L-serine with palmitoyl-CoA to produce 3-ketodihydrospingosine, the reaction of the first step in sphingolipid biosynthesis. ALAS is involved in heme biosynthesis; it catalyzes the synthesis of 5-aminolevulinic acid from glycine and succinyl-coenzyme A. AONS catalyses the decarboxylative condensation of l-alanine and pimeloyl-CoA in the first committed step of biotin biosynthesis. KBL catalyzes the second reaction step of the metabolic degradation pathway for threonine converting 2-amino-3-ketobutyrate, to glycine and acetyl-CoA. The members of this CD are widely found in all three forms of life.
Probab=99.85 E-value=9.4e-20 Score=163.45 Aligned_cols=221 Identities=16% Similarity=0.122 Sum_probs=147.8
Q ss_pred hHHHhhhC---CCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccC
Q 044773 2 YQLAQKRH---LKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENT 78 (289)
Q Consensus 2 l~~~~~~~---~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (289)
++++++.. .+++++++++|+||||...+ +++|+++|+++|+++|+|++|+...+. .....+..+ . .
T Consensus 120 le~~i~~~~~~~~~~~v~~~~~~~~tG~~~~---~~~i~~~~~~~~~~livD~a~~~g~~~-~~~~~~~~~-~------~ 188 (349)
T cd06454 120 LEKLLREARRPYGKKLIVTEGVYSMDGDIAP---LPELVDLAKKYGAILFVDEAHSVGVYG-PHGRGVEEF-G------G 188 (349)
T ss_pred HHHHHHHhhccCCCeEEEEeccccCCCCccC---HHHHHHHHHHcCCEEEEEccccccccC-CCCCChhhh-c------c
Confidence 45555542 35778888899999999887 899999999999999999999743222 111111111 1 0
Q ss_pred CCCCceEEEecCccccCCCCceEEEEEecCHHHHHHHHhcccc---CCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHH
Q 044773 79 EVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDTVVAAATKMSSF---GLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQ 155 (289)
Q Consensus 79 d~~~~~i~i~s~sK~~g~~G~r~G~i~~~~~~~~~~~~~~~~~---~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~ 155 (289)
+..+.+++++|+||.++.+| ||++.+++.+.........+ ...+++.+.++...++.. .+ .+..++++++
T Consensus 189 ~~~~~~i~~~s~sK~~~~~g---G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~---~~-~~~~~~~~~~ 261 (349)
T cd06454 189 LTDDVDIIMGTLGKAFGAVG---GYIAGSKELIDYLRSYARGFIFSTSLPPAVAAAALAALEVL---QG-GPERRERLQE 261 (349)
T ss_pred ccccCcEEEeechhhhcccC---CEEECCHHHHHHHHHhchhhhccCCCCHHHHHHHHHHHHHH---hc-CHHHHHHHHH
Confidence 23467899999999998666 99998654433332222222 224455555555555432 22 4566788999
Q ss_pred HHHHHHHHHHhcCCceecCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCC-CCCCCeEEEEEec-CC
Q 044773 156 RHRKLVSGLEKAGISCLKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCH-CTEPGWFRVCFAN-MS 233 (289)
Q Consensus 156 ~~~~l~~~l~~~g~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~-~~~~~~~Ris~~~-~~ 233 (289)
+++.+.+.|.+.|+++..+.++++.++.++.. .+..++...|.++ ||.+.++.... ....+++|++++. ++
T Consensus 262 ~~~~l~~~l~~~g~~~~~~~~~~~~~~~~~~~------~~~~~~~~~L~~~-gI~~~~~~~~~~~~~~~~iRi~~~~~~~ 334 (349)
T cd06454 262 NVRYLRRGLKELGFPVGGSPSHIIPPLIGDDP------AKAVAFSDALLER-GIYVQAIRYPTVPRGTARLRISLSAAHT 334 (349)
T ss_pred HHHHHHHHHHhcCCcccCCCCCcEEEEeCCCh------HHHHHHHHHHHhC-CceEEEecCCccCCCCCeEEEEEeCCCC
Confidence 99999999998888777665655555544321 1234677777755 99998864322 1224789999975 69
Q ss_pred HHHHHHHHHHHHHH
Q 044773 234 EDTLKLSMQRLKAF 247 (289)
Q Consensus 234 ~e~l~~~l~~l~~~ 247 (289)
++++++++++|+++
T Consensus 335 ~~~i~~~~~~l~~~ 348 (349)
T cd06454 335 KEDIDRLLEALKEV 348 (349)
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999999764
No 131
>PRK04073 rocD ornithine--oxo-acid transaminase; Provisional
Probab=99.85 E-value=4.1e-20 Score=168.88 Aligned_cols=204 Identities=18% Similarity=0.167 Sum_probs=141.6
Q ss_pred CCccEEEEeCCCCCCccCCCHH-HHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEe
Q 044773 10 LKVKGVLVTNPSNPLGTTMSRN-ELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVY 88 (289)
Q Consensus 10 ~~~~~i~l~~p~NPtG~~~~~~-~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~ 88 (289)
+++++|++++|+||+|.+++.+ .+++|.++|+++|+++|+||+|.+++.++..+. .+.. +....+.
T Consensus 185 ~~~~~viiep~~~~~G~~~~~~~~l~~l~~l~~~~g~lli~DEv~~g~g~~g~~~~--~~~~-----------~~~pdi~ 251 (396)
T PRK04073 185 PNTAAFLVEPIQGEAGINIPPEGFLKAARELCKEENVLFIADEIQTGLGRTGKLFA--CDWD-----------NVTPDMY 251 (396)
T ss_pred cCeEEEEEcCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEecchhCCCcCcHHHH--hhhc-----------CCCCCEE
Confidence 4678878887799999998765 799999999999999999999998755543211 1111 1122355
Q ss_pred cCccccCCCCceEEEEEecCHHHHHHHHhc--cccCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 044773 89 SLSKDLGLPGFRVGAIYSNDDTVVAAATKM--SSFGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEK 166 (289)
Q Consensus 89 s~sK~~g~~G~r~G~i~~~~~~~~~~~~~~--~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 166 (289)
+|||.+|.+|+|+||++++ +.+.+.+... ...+..+++.+.++.+.|+... + ....++.+++.+++.+.|++
T Consensus 252 ~~sK~lg~gg~~ig~~~~~-~~i~~~~~~~~~~~t~~~~~~~~aaa~aaL~~~~---~--~~l~~~~~~~~~~l~~~L~~ 325 (396)
T PRK04073 252 ILGKALGGGVFPISCVAAN-RDILGVFTPGSHGSTFGGNPLACAVSIAALEVLE---E--EKLPERSLELGEYFKEQLKE 325 (396)
T ss_pred EecccccCCCCcceEEEEc-HHHHhhhcCCCCCCCCCCCHHHHHHHHHHHHHHH---h--cCHHHHHHHHHHHHHHHHHh
Confidence 6899999778999999995 4455544332 2233478888888888876321 1 12335556677888888877
Q ss_pred cC---CceecCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEEe-cCCHHHHHHHHH
Q 044773 167 AG---ISCLKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFA-NMSEDTLKLSMQ 242 (289)
Q Consensus 167 ~g---~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ris~~-~~~~e~l~~~l~ 242 (289)
++ +....+. |.++++++... ..++...|+ ++||.+.+. +++++||++. ..++++++++++
T Consensus 326 l~~~~i~~~~~~-g~~~~~~~~~~--------~~~~~~~l~-~~Gv~~~~~------~~~~iRi~p~l~~t~e~i~~~~~ 389 (396)
T PRK04073 326 IDNPMIKEVRGR-GLFIGVELNEP--------ARPYCEALK-EEGLLCKET------HETVIRFAPPLVITKEELDWAFE 389 (396)
T ss_pred hcCCcccceecc-eEEEEEEecch--------HHHHHHHHH-HCCeEEecC------CCCEEEEECCcccCHHHHHHHHH
Confidence 53 2333344 46677877531 235777776 569999763 2368999974 369999999999
Q ss_pred HHHHHH
Q 044773 243 RLKAFV 248 (289)
Q Consensus 243 ~l~~~l 248 (289)
+|++++
T Consensus 390 ~l~~~l 395 (396)
T PRK04073 390 KIKAVL 395 (396)
T ss_pred HHHHHh
Confidence 998865
No 132
>PRK10874 cysteine sulfinate desulfinase; Provisional
Probab=99.85 E-value=1.8e-19 Score=164.93 Aligned_cols=209 Identities=14% Similarity=0.165 Sum_probs=146.0
Q ss_pred CCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEec
Q 044773 10 LKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVYS 89 (289)
Q Consensus 10 ~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~s 89 (289)
++++++++++|+||||.+++ +++|.++|+++|+++|+|++|+.. ....++.++ +.++++.|
T Consensus 159 ~~t~lv~i~~~~n~tG~~~~---~~~i~~l~~~~g~~~ivD~a~~~g----~~~~~~~~~------------~~d~~~~s 219 (401)
T PRK10874 159 PRTRILALGQMSNVTGGCPD---LARAITLAHQAGMVVMVDGAQGAV----HFPADVQAL------------DIDFYAFS 219 (401)
T ss_pred cCcEEEEEeCCcccccCcCC---HHHHHHHHHHcCCEEEEECCcccc----cccCCchhc------------CCCEEEEe
Confidence 57899999999999999998 889999999999999999999732 111222222 45688899
Q ss_pred CccccCCCCceEEEEEecCHHHHHHHHhcc-----------------------ccCCCChHHHHHHHHHhCCchHHHHHH
Q 044773 90 LSKDLGLPGFRVGAIYSNDDTVVAAATKMS-----------------------SFGLVSSQTQYLLSALLSDKKFAQNYI 146 (289)
Q Consensus 90 ~sK~~g~~G~r~G~i~~~~~~~~~~~~~~~-----------------------~~~~~~~~~q~~~~~~l~~~~~~~~~~ 146 (289)
++|.+|.+| +||++++++.+ +.+.... ..++.+.....++..+++... +...
T Consensus 220 ~~K~~gp~G--~G~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Gt~~~~~~~al~~al~~l~--~~g~ 294 (401)
T PRK10874 220 GHKLYGPTG--IGVLYGKSELL-EAMSPWQGGGKMLTEVSFDGFTPQSAPWRFEAGTPNVAGVIGLSAALEWLA--DIDI 294 (401)
T ss_pred cccccCCCc--cEEEEEchHHH-hcCCCeecCCcceEeeccCccCCCCChhhccCCCcCHHHHHHHHHHHHHHH--HhCH
Confidence 999888666 69999865443 3222110 012234456666666664321 1223
Q ss_pred HHHHHHHHHHHHHHHHHHHhc-CCceecCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCC------
Q 044773 147 SENKKRLKQRHRKLVSGLEKA-GISCLKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHC------ 219 (289)
Q Consensus 147 ~~~~~~~~~~~~~l~~~l~~~-g~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~------ 219 (289)
.+..++.++.++++.+.|+++ |+++..+..+.++++.++.. . ..++...| .++||.+.+|..|..
T Consensus 295 ~~~~~~~~~l~~~l~~~l~~~~g~~~~~~~~~~i~~~~~~~~-~------~~~~~~~L-~~~gI~v~~g~~~~~~~~~~~ 366 (401)
T PRK10874 295 NQAESWSRSLATLAEDALAKLPGFRSFRCQDSSLLAFDFAGV-H------HSDLVTLL-AEYGIALRAGQHCAQPLLAAL 366 (401)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCCcEEEEEECCc-C------HHHHHHHH-HHCCcEEeccccchHHHHHHh
Confidence 456778888889999999887 88776544445555666531 1 13466555 578999999987642
Q ss_pred CCCCeEEEEEec-CCHHHHHHHHHHHHHHHHH
Q 044773 220 TEPGWFRVCFAN-MSEDTLKLSMQRLKAFVDS 250 (289)
Q Consensus 220 ~~~~~~Ris~~~-~~~e~l~~~l~~l~~~l~~ 250 (289)
...+++|+|++. ++++|++.+++.|+++++.
T Consensus 367 g~~~~iRiS~~~~nt~edid~ll~al~~~~~~ 398 (401)
T PRK10874 367 GVTGTLRASFAPYNTQSDVDALVNAVDRALEL 398 (401)
T ss_pred CCCCEEEEEecccCCHHHHHHHHHHHHHHHHH
Confidence 124799999965 7999999999999988764
No 133
>TIGR03301 PhnW-AepZ 2-aminoethylphosphonate aminotransferase. This family includes a number of 2-aminoethylphosphonate aminotransferases, some of which are indicated to operate in the catabolism of 2-aminoethylphosphonate (AEP) and others which are involved in the biosynthesis of the same compound. The catabolic enzyme (PhnW, ) is known to use pyruvate:alanine as the transfer partner and is modeled by the equivalog-level alignment (TIGR02326). The PhnW family is apparently a branch of a larger tree including genes (AepZ) adjacent to others responsible for the biosynthesis of phosphonoacetaldehyde. The identity of the transfer partner is unknown for these enzymes and considering the reversed flux compared to PhnW, it may very well be different.
Probab=99.85 E-value=2e-19 Score=161.62 Aligned_cols=215 Identities=16% Similarity=0.174 Sum_probs=149.1
Q ss_pred hHHHhhhCCCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCC
Q 044773 2 YQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVW 81 (289)
Q Consensus 2 l~~~~~~~~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 81 (289)
++++++.+++++++++++|+||||.+.+ +++|+++|+++++++|+|++++. ++. ..++. ..
T Consensus 116 l~~~l~~~~~~~~v~~~~~~~~~G~~~~---~~~i~~l~~~~~~~livD~~~s~---g~~-~~~~~------------~~ 176 (355)
T TIGR03301 116 IEEALAADPDITHVATVHHETTTGILNP---LEAIAKVARSHGAVLIVDAMSSF---GAI-PIDIE------------EL 176 (355)
T ss_pred HHHHHHhCCCceEEEEEecCCcccchhH---HHHHHHHHHHcCCEEEEEecccc---CCc-ccchh------------hc
Confidence 4566665667888899999999999988 89999999999999999998763 222 22222 22
Q ss_pred CceEEEecCcccc-CCCCceEEEEEecCHHHHHHHHhc-------------------cccCCCChHHHHHHHHHhCCchH
Q 044773 82 NRVHIVYSLSKDL-GLPGFRVGAIYSNDDTVVAAATKM-------------------SSFGLVSSQTQYLLSALLSDKKF 141 (289)
Q Consensus 82 ~~~i~i~s~sK~~-g~~G~r~G~i~~~~~~~~~~~~~~-------------------~~~~~~~~~~q~~~~~~l~~~~~ 141 (289)
+.+++++|++|++ |.+| +||++++++.+.. +... ...++.+.+.+.++..+++....
T Consensus 177 ~~d~~~~s~~K~l~~~~G--~g~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~a~~~al~~~~~ 253 (355)
T TIGR03301 177 DVDALIASANKCLEGVPG--FGFVIARRDLLEA-SAGNARSLYLDLYDQWAYMEKTGKWRFTPPTHTVYAFAQALEELEA 253 (355)
T ss_pred CccEEEecCCcccccCCc--eeEEEECHHHHHH-hhCCCCCceeeHHHHHHHhhhcCCCCCCCcHHHHHHHHHHHHHHHH
Confidence 5668899999987 4455 7999997654433 3210 01123555666666666653211
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCceecC---CceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCC
Q 044773 142 AQNYISENKKRLKQRHRKLVSGLEKAGISCLKS---NAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCH 218 (289)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~---~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~ 218 (289)
...+.+..++++++++++.+.|++.|+++..+ .+++++|+.++.... .+..++...|. +.||.+.|+..+.
T Consensus 254 -~g~~~~~~~~~~~~~~~~~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~l~-~~gi~i~~~~~~~ 327 (355)
T TIGR03301 254 -EGGVPARIARYRRNRELLVDGLRALGFQPLLPERWQSPIIVSFLYPDDPD----FDFDDFYQELK-ERGFVIYPGKLTL 327 (355)
T ss_pred -cccHHHHHHHHHHHHHHHHHHHHHcCCeeecCCCCCCCcEEEEECCCCCc----chHHHHHHHHH-HCCEEEECCcccc
Confidence 11256777788999999999999888875543 245677888764211 11234666655 6799999987553
Q ss_pred CCCCCeEEEEE-ecCCHHHHHHHHHHHHHH
Q 044773 219 CTEPGWFRVCF-ANMSEDTLKLSMQRLKAF 247 (289)
Q Consensus 219 ~~~~~~~Ris~-~~~~~e~l~~~l~~l~~~ 247 (289)
.+++||++ ..+++++++++++.|+++
T Consensus 328 ---~~~iRis~~~~~~~~~i~~~~~~l~~~ 354 (355)
T TIGR03301 328 ---ADTFRIGTIGEIDAADIERLLEAIKDA 354 (355)
T ss_pred ---ccEEEEecCCCCCHHHHHHHHHHHHhh
Confidence 26899998 557999999999999875
No 134
>cd06451 AGAT_like Alanine-glyoxylate aminotransferase (AGAT) family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to alanine-glyoxylate aminotransferase (AGAT), serine-glyoxylate aminotransferase (SGAT), and 3-hydroxykynurenine transaminase (HKT). AGAT is a homodimeric protein, which catalyses the transamination of glyoxylate to glycine, and SGAT converts serine and glyoxylate to hydroxypyruvate and glycine. HKT catalyzes the PLP-dependent transamination of 3-hydroxykynurenine, a potentially toxic metabolite of the kynurenine pathway.
Probab=99.85 E-value=3.2e-19 Score=160.67 Aligned_cols=215 Identities=17% Similarity=0.191 Sum_probs=146.2
Q ss_pred hHHHhhhCCCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCC
Q 044773 2 YQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVW 81 (289)
Q Consensus 2 l~~~~~~~~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 81 (289)
++++++. .++++|++++|+||+|.+++ +++|.++|+++|+++++|++|. ++.. ..++.+ .
T Consensus 116 l~~~i~~-~~~~~v~i~~~~~~~G~~~~---~~~i~~~a~~~~~~li~D~~~~---~g~~-~~~~~~------------~ 175 (356)
T cd06451 116 IAEALEQ-HDIKAVTLTHNETSTGVLNP---LEGIGALAKKHDALLIVDAVSS---LGGE-PFRMDE------------W 175 (356)
T ss_pred HHHHHhc-cCCCEEEEeccCCCcccccC---HHHHHHHHHhcCCEEEEeeehh---ccCc-cccccc------------c
Confidence 3444543 27899999999999999998 8888999999999999999986 2222 122211 1
Q ss_pred CceEEEecCccccCCCCceEEEEEecCHHHHHHHHh----cc----------------cc-CCCChHHHHHHHHHhCCch
Q 044773 82 NRVHIVYSLSKDLGLPGFRVGAIYSNDDTVVAAATK----MS----------------SF-GLVSSQTQYLLSALLSDKK 140 (289)
Q Consensus 82 ~~~i~i~s~sK~~g~~G~r~G~i~~~~~~~~~~~~~----~~----------------~~-~~~~~~~q~~~~~~l~~~~ 140 (289)
+.+++++|++|+++.| .++||++.+++.+ +.+.. .. .. ++.+...+.++..+++...
T Consensus 176 ~~d~~~~s~~K~l~~p-~g~G~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~a~~aal~~l~ 253 (356)
T cd06451 176 GVDVAYTGSQKALGAP-PGLGPIAFSERAL-ERIKKKTKPKGFYFDLLLLLKYWGEGYSYPHTPPVNLLYALREALDLIL 253 (356)
T ss_pred CccEEEecCchhccCC-CCcceeEECHHHH-HHHHhcCCCCceeecHHHHHhhhcccCCCCCCChHHHHHHHHHHHHHHH
Confidence 3346778999999844 4689999965543 33331 00 01 1122333445555554321
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCceecCC---ceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCC
Q 044773 141 FAQNYISENKKRLKQRHRKLVSGLEKAGISCLKSN---AGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSC 217 (289)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~---~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f 217 (289)
...+++..++.+++.+++.+.|.+.|+++..+. ++.++|+.++...+ ..+++..|.+++||.+.+|..+
T Consensus 254 --~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~L~~~~gI~~~~g~~~ 325 (356)
T cd06451 254 --EEGLENRWARHRRLAKALREGLEALGLKLLAKPELRSPTVTAVLVPEGVD------GDEVVRRLMKRYNIEIAGGLGP 325 (356)
T ss_pred --HhhHHHHHHHHHHHHHHHHHHHHHcCCeeccCcccCCCceEEEECCCCCC------HHHHHHHHHHhCCEEEeccccc
Confidence 233567778888999999999998888775432 34556666654322 2467888775569999998754
Q ss_pred CCCCCCeEEEEEec-CCHHHHHHHHHHHHHHH
Q 044773 218 HCTEPGWFRVCFAN-MSEDTLKLSMQRLKAFV 248 (289)
Q Consensus 218 ~~~~~~~~Ris~~~-~~~e~l~~~l~~l~~~l 248 (289)
. .++++|++++. +++++++++++.|++++
T Consensus 326 ~--~~~~iRis~~~~~~~e~v~~~~~~l~~~~ 355 (356)
T cd06451 326 T--AGKVFRIGHMGEATREDVLGVLSALEEAL 355 (356)
T ss_pred c--cCCEEEEecCCCCCHHHHHHHHHHHHHHh
Confidence 2 34699999954 68999999999998875
No 135
>TIGR00707 argD acetylornithine and succinylornithine aminotransferases. Members of this family may also act on ornithine, like ornithine aminotransferase (EC 2.6.1.13) (see MEDLINE:90337349) and on succinyldiaminopimelate, like N-succinyldiaminopmelate-aminotransferase (EC 2.6.1.17, DapC, an enzyme of lysine biosynthesis) (see MEDLINE:99175097)
Probab=99.84 E-value=1.9e-19 Score=163.42 Aligned_cols=203 Identities=19% Similarity=0.171 Sum_probs=138.5
Q ss_pred CCccEEEEeCCCCCCccC-CCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEe
Q 044773 10 LKVKGVLVTNPSNPLGTT-MSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVY 88 (289)
Q Consensus 10 ~~~~~i~l~~p~NPtG~~-~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~ 88 (289)
+++++|+++.++||+|.. ++.+++++|.++|+++++++|+||+|.++.+.+.. .+. .... .... +.
T Consensus 169 ~~~~~v~~~p~~~~~g~~~~~~~~l~~i~~l~~~~~~~~i~De~~~~~~~~g~~-~~~-~~~~--------~~~d---~~ 235 (379)
T TIGR00707 169 DETAAVIVEPIQGEGGVNPASAEFLKALREICKDKDALLIFDEVQTGIGRTGKF-FAY-EHYG--------IEPD---II 235 (379)
T ss_pred hCeeEEEEEccccCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCccchh-hhH-HhcC--------CCCC---EE
Confidence 367888886557777864 79999999999999999999999999876554432 111 1111 1122 34
Q ss_pred cCccccCCCCceEEEEEecCHHHHHHHHhc--cccCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 044773 89 SLSKDLGLPGFRVGAIYSNDDTVVAAATKM--SSFGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEK 166 (289)
Q Consensus 89 s~sK~~g~~G~r~G~i~~~~~~~~~~~~~~--~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 166 (289)
+|||.++ +|+|+||++++ +.+.+.+... ...+..+++.|.++.++++... . .+..++++++++.+++.|.+
T Consensus 236 t~sK~~~-~G~riG~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~aa~aaL~~~~---~--~~~~~~~~~~~~~~~~~l~~ 308 (379)
T TIGR00707 236 TLAKGLG-GGVPIGATLAK-EEVAEAFTPGDHGSTFGGNPLACAAALAVLEVIE---K--ERLLENVKEKGDYFKERLEE 308 (379)
T ss_pred EEccccc-CCcccEEEEEc-HHHHhhhcCCCCCCCCCCCHHHHHHHHHHHHHHH---h--hhHHHHHHHHHHHHHHHHHH
Confidence 7899999 99999999996 4455555432 2223367888988887775321 1 23455666676777776665
Q ss_pred cCCce---ecCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEEec-CCHHHHHHHHH
Q 044773 167 AGISC---LKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFAN-MSEDTLKLSMQ 242 (289)
Q Consensus 167 ~g~~~---~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ris~~~-~~~e~l~~~l~ 242 (289)
.+... ..+..|.++|++++.. ..++.+.|. +.||.+.|+. .+++||+++. .++++++++++
T Consensus 309 ~~~~~~~~~~~~~g~~~~~~~~~~--------~~~~~~~l~-~~Gv~v~~~~------~~~lRi~~~~~~t~~~i~~~~~ 373 (379)
T TIGR00707 309 LGKNYPNKEVRGKGLMLGIELEAP--------CKDIVKKAL-EKGLLVNCAG------PKVLRFLPPLIITKEEIDEAVS 373 (379)
T ss_pred HHhhCCCCccccCceEEEEEecCc--------HHHHHHHHH-HCCcEEeeCC------CCEEEEECCCcCCHHHHHHHHH
Confidence 42211 1123567888887642 135666655 6799999852 3689999854 69999999999
Q ss_pred HHHHH
Q 044773 243 RLKAF 247 (289)
Q Consensus 243 ~l~~~ 247 (289)
+|+++
T Consensus 374 ~l~~~ 378 (379)
T TIGR00707 374 ALEEA 378 (379)
T ss_pred HHHHh
Confidence 99875
No 136
>PRK07179 hypothetical protein; Provisional
Probab=99.84 E-value=3e-19 Score=163.75 Aligned_cols=222 Identities=17% Similarity=0.118 Sum_probs=141.5
Q ss_pred hHHHhhhCCCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCC
Q 044773 2 YQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVW 81 (289)
Q Consensus 2 l~~~~~~~~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 81 (289)
+++++..+ ++++|++++|+||||.+.+ +++|.++|+++|+++|+||+|+...+ +....++....+ -..
T Consensus 173 l~~~l~~~-~~~lV~v~~v~n~tG~i~p---l~~I~~l~~~~~~~livDea~~~g~~-g~~g~g~~~~~~-------~~~ 240 (407)
T PRK07179 173 LRRQIERH-GPGIIVVDSVYSTTGTIAP---LADIVDIAEEFGCVLVVDESHSLGTH-GPQGAGLVAELG-------LTS 240 (407)
T ss_pred HHHHHHhc-CCeEEEECCCCCCCCcccc---HHHHHHHHHHcCCEEEEECcccccCc-CCCCCchHHhcC-------CCC
Confidence 45555443 4678889999999999999 88999999999999999999984322 322222222211 012
Q ss_pred CceEEEecCccccCCCCceEEEEEecCHHHHHHHHhccc---cCCC-ChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHH
Q 044773 82 NRVHIVYSLSKDLGLPGFRVGAIYSNDDTVVAAATKMSS---FGLV-SSQTQYLLSALLSDKKFAQNYISENKKRLKQRH 157 (289)
Q Consensus 82 ~~~i~i~s~sK~~g~~G~r~G~i~~~~~~~~~~~~~~~~---~~~~-~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 157 (289)
..++++.|+||++|. |+||+++++ .+.+.+..... +... ++....++.++++. .....+.++++++++
T Consensus 241 ~vdi~~~S~sK~~g~---~~G~l~~~~-~~~~~~~~~~~~~~~~~t~~~~~~aa~~aal~~----~~~~~~~~~~l~~~~ 312 (407)
T PRK07179 241 RVHFITASLAKAFAG---RAGIITCPR-ELAEYVPFVSYPAIFSSTLLPHEIAGLEATLEV----IESADDRRARLHANA 312 (407)
T ss_pred CCCEEEeechHhhhc---cCeEEEeCH-HHHHHHHHhCcCeeeCCCCCHHHHHHHHHHHHH----HhcCHHHHHHHHHHH
Confidence 335889999999973 579999964 45444443221 2211 22222223333332 222345678899999
Q ss_pred HHHHHHHHhcCCceecCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCC-CCCCCCeEEEEEec-CCHH
Q 044773 158 RKLVSGLEKAGISCLKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSC-HCTEPGWFRVCFAN-MSED 235 (289)
Q Consensus 158 ~~l~~~l~~~g~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f-~~~~~~~~Ris~~~-~~~e 235 (289)
+++.+.|.++|+++. +.+ .++++.++... +...+...| .++||.+..-... .+..++.+||+++. ++++
T Consensus 313 ~~l~~~L~~~g~~v~-~~~-~i~~l~~~~~~------~~~~~~~~L-~~~GI~~~~~~~p~~~~~~~~lRis~~~~~t~e 383 (407)
T PRK07179 313 RFLREGLSELGYNIR-SES-QIIALETGSER------NTEVLRDAL-EERNVFGAVFCAPATPKNRNLIRLSLNADLTAS 383 (407)
T ss_pred HHHHHHHHHcCCCCC-CCC-CEEEEEeCCHH------HHHHHHHHH-HHCCceEeeecCCCCCCCCceEEEEECCCCCHH
Confidence 999999998887766 333 45666654321 123344454 4779974311100 11235789999964 7999
Q ss_pred HHHHHHHHHHHHHHHHH
Q 044773 236 TLKLSMQRLKAFVDSIT 252 (289)
Q Consensus 236 ~l~~~l~~l~~~l~~~~ 252 (289)
+++++++.|++++++..
T Consensus 384 di~~~~~~l~~~~~~~~ 400 (407)
T PRK07179 384 DLDRVLEVCREARDEVD 400 (407)
T ss_pred HHHHHHHHHHHHHHhhC
Confidence 99999999999888754
No 137
>PLN00144 acetylornithine transaminase
Probab=99.84 E-value=2.4e-19 Score=162.81 Aligned_cols=214 Identities=16% Similarity=0.124 Sum_probs=144.7
Q ss_pred hHHHhhhCCCccEEEEeCCCCCCccCC-CHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccC-hhhhhhccccccCC
Q 044773 2 YQLAQKRHLKVKGVLVTNPSNPLGTTM-SRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVS-IMEILKDRNCENTE 79 (289)
Q Consensus 2 l~~~~~~~~~~~~i~l~~p~NPtG~~~-~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~-~~~~~~~~~~~~~d 79 (289)
+++++.. .++.+|++...+||.|... +.+.+++|.++|++||+++|+||+|.+++.++..+.. ...+.+
T Consensus 159 l~~~~~~-~~~aavi~eP~q~~gg~~~~~~~~~~~l~~l~~~~g~llI~DEv~tg~gr~g~~~~~~~~~~~P-------- 229 (382)
T PLN00144 159 ARKLIQK-GKTAAVFVEPVQGEGGIYPATKEFLQGLRALCDEAGALLVFDEVQCGLGRTGYLWAHEAYGVEP-------- 229 (382)
T ss_pred HHHhcCC-CCeEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCccchHhhhhhcCCCC--------
Confidence 3444433 3566755553389944432 4556999999999999999999999988666653221 222321
Q ss_pred CCCceEEEecCccccCCCCceEEEEEecCHHHHHHHHh--ccccCCCChHHHHHHH---HHhCCchHHHHHHHHHHHHHH
Q 044773 80 VWNRVHIVYSLSKDLGLPGFRVGAIYSNDDTVVAAATK--MSSFGLVSSQTQYLLS---ALLSDKKFAQNYISENKKRLK 154 (289)
Q Consensus 80 ~~~~~i~i~s~sK~~g~~G~r~G~i~~~~~~~~~~~~~--~~~~~~~~~~~q~~~~---~~l~~~~~~~~~~~~~~~~~~ 154 (289)
+ +.||||.++ +|+|+||+++++ .+.+.+.. ....+..|++.+.++. .+++++++ .+++++..+.++
T Consensus 230 --D----i~t~sK~l~-~G~pig~v~~~~-~~~~~~~~~~~~~T~~~~pl~~aaa~a~l~~i~~~~~-~~~~~~~g~~l~ 300 (382)
T PLN00144 230 --D----IMTLAKPLA-GGLPIGAVLVTE-KVASAINPGDHGSTFAGGPLVCNAALAVLDKISKPGF-LASVAKKGEYLR 300 (382)
T ss_pred --C----EEEeccccc-CCcceEEEEEcH-HHHhccCCCCCCCCCCCCHHHHHHHHHHHHHHhhchH-HHHHHHHHHHHH
Confidence 2 889999998 999999999964 44444432 2223347888888888 55666665 666666666664
Q ss_pred HHHHHHHHHHHhcCCceecCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEEec-CC
Q 044773 155 QRHRKLVSGLEKAGISCLKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFAN-MS 233 (289)
Q Consensus 155 ~~~~~l~~~l~~~g~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ris~~~-~~ 233 (289)
+ .+.+.+.+++........|+++|+.+.. .. ..+...++ +.||.+.|+.. ...+||+++. ++
T Consensus 301 ~---~l~~~~~~~~~~~~vrg~G~~~~l~l~~--~~------~~~~~~~~-~~Gv~i~~~~~-----~~~lrl~p~~~~~ 363 (382)
T PLN00144 301 E---LLRRKLGGNPHVKEVRGVGLLVGIQLDV--PA------GPLVDACR-DSGLLVLTAGK-----GDVVRLVPPLVIS 363 (382)
T ss_pred H---HHHHHHhhCCCceeeecCceEEEEEecC--cc------HHHHHHHH-HCCeEEeecCC-----CCEEEEeCCCccC
Confidence 3 3445555543211222378999999831 11 34666665 77999998621 3689999976 79
Q ss_pred HHHHHHHHHHHHHHHHH
Q 044773 234 EDTLKLSMQRLKAFVDS 250 (289)
Q Consensus 234 ~e~l~~~l~~l~~~l~~ 250 (289)
++++++++++|.+++.+
T Consensus 364 ~~~i~~~~~~l~~~l~~ 380 (382)
T PLN00144 364 EAELEQAVEILADCLPA 380 (382)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 99999999999998865
No 138
>TIGR02326 transamin_PhnW 2-aminoethylphosphonate--pyruvate transaminase. Members of this family are 2-aminoethylphosphonate--pyruvate transaminase. This enzyme acts on the most common type of naturally occurring phosphonate. It interconverts 2-aminoethylphosphonate plus pyruvate with 2-phosphonoacetaldehyde plus alanine. The enzyme phosphonoacetaldehyde hydrolase (EC 3.11.1.1), usually encoded by an adjacent gene, then cleaves the C-P bond of phosphonoacetaldehyde, adding water to yield acetaldehyde plus inorganic phosphate. Species with this pathway generally have an identified phosphonate ABC transporter but do not also have the multisubunit C-P lysase complex as found in Escherichia coli.
Probab=99.84 E-value=8.1e-19 Score=158.53 Aligned_cols=218 Identities=12% Similarity=0.165 Sum_probs=153.1
Q ss_pred hHHHhhhCCCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCC
Q 044773 2 YQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVW 81 (289)
Q Consensus 2 l~~~~~~~~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 81 (289)
++++++.+++++++++++++||||.+++ +++|.++|+++|+++|+|++++ + |..+.++.++
T Consensus 120 l~~~l~~~~~~~~v~~~~~~~~tG~~~~---i~~I~~l~~~~g~~livD~~~~---~-g~~~~~~~~~------------ 180 (363)
T TIGR02326 120 VEAILAADPAITHIALVHCETTTGILNP---IEAVAKLAHRHGKVTIVDAMSS---F-GGIPIDIAEL------------ 180 (363)
T ss_pred HHHHHhhCCCccEEEEEeecCCccccCc---HHHHHHHHHHcCCEEEEEcccc---c-cCcccchhhc------------
Confidence 4566666667888899999999999999 8999999999999999999886 3 2323343333
Q ss_pred CceEEEecCccccC-CCCceEEEEEecCHHHHHHHHh--------------c-----cccCCCChHHHHHHHHHhCCchH
Q 044773 82 NRVHIVYSLSKDLG-LPGFRVGAIYSNDDTVVAAATK--------------M-----SSFGLVSSQTQYLLSALLSDKKF 141 (289)
Q Consensus 82 ~~~i~i~s~sK~~g-~~G~r~G~i~~~~~~~~~~~~~--------------~-----~~~~~~~~~~q~~~~~~l~~~~~ 141 (289)
+.+++++|++|+++ .+| +||++++++.+...... . ...++.+...+.++..+++....
T Consensus 181 ~~D~~~~s~~K~l~~p~G--~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ft~~~~~~~al~~al~~l~~ 258 (363)
T TIGR02326 181 HIDYLISSANKCIQGVPG--FGFVIARQAELAACKGNARSLSLDLYDQWRCMEDNHGKWRFTSPTHVVHAFAQALLELEK 258 (363)
T ss_pred CccEEEecCccccccCCc--ceEEEECHHHHHHhhcCCCceeecHHHHHHHHhccCCCCCCCCcHHHHHHHHHHHHHHHH
Confidence 45588999999884 345 79999976554332110 0 01123566677776666654211
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCceecC---CceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCC
Q 044773 142 AQNYISENKKRLKQRHRKLVSGLEKAGISCLKS---NAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCH 218 (289)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~---~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~ 218 (289)
...+++..++++++++++++.|+++|+....+ .++...++.++.... .+..++...| +++||.+.||..+.
T Consensus 259 -~g~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~v~~~L-~~~gi~v~~g~~~~ 332 (363)
T TIGR02326 259 -EGGVAARHQRYQQNQKTLVAGMRALGFEPLLDDEIQSPIITSFYSPEDPD----YRFADFYQRL-KEQGFVIYPGKVSQ 332 (363)
T ss_pred -hhCHHHHHHHHHHHHHHHHHHHHHcCCeeccCcccCCceEEEEECCCCCC----CCHHHHHHHH-HHCCEEEECCcCCC
Confidence 22256678999999999999999888876543 345556677664211 1113455555 46799999997653
Q ss_pred CCCCCeEEEEE-ecCCHHHHHHHHHHHHHHHH
Q 044773 219 CTEPGWFRVCF-ANMSEDTLKLSMQRLKAFVD 249 (289)
Q Consensus 219 ~~~~~~~Ris~-~~~~~e~l~~~l~~l~~~l~ 249 (289)
..++||++ +.++.++++.++++|++++.
T Consensus 333 ---~~~iRi~~~~~~~~edv~~~l~~l~~~l~ 361 (363)
T TIGR02326 333 ---VDCFRIGNIGEVDAADITRLLTAIGKAMY 361 (363)
T ss_pred ---CCEEEEecCCCCCHHHHHHHHHHHHHHhC
Confidence 46899997 65799999999999998764
No 139
>PRK04260 acetylornithine aminotransferase; Provisional
Probab=99.84 E-value=2.5e-19 Score=162.62 Aligned_cols=206 Identities=15% Similarity=0.134 Sum_probs=147.8
Q ss_pred CCccEEEEeCCCCCCccCC-CHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccC-hhhhhhccccccCCCCCceEEE
Q 044773 10 LKVKGVLVTNPSNPLGTTM-SRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVS-IMEILKDRNCENTEVWNRVHIV 87 (289)
Q Consensus 10 ~~~~~i~l~~p~NPtG~~~-~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~-~~~~~~~~~~~~~d~~~~~i~i 87 (289)
+++.+|++++++|++|... +.+.++++.++|+++|+++|+||+|.++..++..... ...+ ..+ +
T Consensus 164 ~~~a~vi~e~v~~~~G~~~~~~~~l~~~~~l~~~~~~~~i~De~~~g~g~~g~~~~~~~~~~----------~pd----i 229 (375)
T PRK04260 164 KNTAAVMLELVQGESGVLPADKDFVKALADYCQETGILLIVDEVQTGMGRTGKLYAFEHYGI----------EPD----I 229 (375)
T ss_pred CCeEEEEECCeECCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhCCCcccchhhhHhhCC----------CCC----E
Confidence 3567888888899999875 4678999999999999999999999876554432111 1112 112 4
Q ss_pred ecCccccCCCCceEEEEEecCHHHHHHHHh--ccccCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044773 88 YSLSKDLGLPGFRVGAIYSNDDTVVAAATK--MSSFGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLE 165 (289)
Q Consensus 88 ~s~sK~~g~~G~r~G~i~~~~~~~~~~~~~--~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 165 (289)
.||||+++ +|+|+||++++++ +.+.+.. ....+..+++.+.++.++++.... +++.++.++..+..++.+.+.+.
T Consensus 230 ~t~sK~l~-~G~~ig~~~~~~~-~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~~~~-~~~~~~~~~~~~~~~~~l~~~~~ 306 (375)
T PRK04260 230 FTLAKGLA-NGVPVGAMLAKSS-LGGAFGYGSHGSTFGGNKLSMAAASATLDIMLT-AGFLEQALENGNYLQEQLQKALQ 306 (375)
T ss_pred EEeccccc-CCcceEEEEEcHH-HHhhcCCCCCCCCCCcCHHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHHHHHHh
Confidence 58999998 8999999999654 4444432 222334688999999999876554 55567777777777777877777
Q ss_pred hcCCceecCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEE-ecCCHHHHHHHHHHH
Q 044773 166 KAGISCLKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCF-ANMSEDTLKLSMQRL 244 (289)
Q Consensus 166 ~~g~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ris~-~~~~~e~l~~~l~~l 244 (289)
+.+.....+..|+++|+++... ..++...+. ++||.+.|. +...+|+++ ..+++++++++++++
T Consensus 307 ~~~~~~~~~~~g~~~~~~~~~~--------~~~~~~~l~-~~Gi~v~~~------~~~~lR~~~~~~~t~~~i~~~l~~l 371 (375)
T PRK04260 307 DKETVTTVRGLGYMIGIETTAD--------LSQLVEAAR-DKGLIVLTA------GTNVIRLLPPLTLTKEEIEQGIAIL 371 (375)
T ss_pred hCCCeeEEeccceEEEEEecCc--------HHHHHHHHH-hCCCEEecC------CCCEEEEcCCCccCHHHHHHHHHHH
Confidence 6642222233688999988431 135666665 679999874 236799999 558999999999999
Q ss_pred HHH
Q 044773 245 KAF 247 (289)
Q Consensus 245 ~~~ 247 (289)
+++
T Consensus 372 ~~~ 374 (375)
T PRK04260 372 SEV 374 (375)
T ss_pred HHh
Confidence 775
No 140
>TIGR03392 FeS_syn_CsdA cysteine desulfurase, catalytic subunit CsdA. Members of this protein family are CsdS. This protein, found Escherichia coli, Yersinia pestis, Photorhabdus luminescens, and related species, and related to SufS, works together with and physically interacts with CsdE (a paralog of SufE). CsdA has cysteine desulfurase activity that is enhanced by CsdE, a sulfur acceptor protein. This gene pair, although involved in FeS cluster biosynthesis, is not found next to other such genes as are its paralogs from the Suf or Isc systems.
Probab=99.84 E-value=5.9e-19 Score=161.35 Aligned_cols=209 Identities=14% Similarity=0.148 Sum_probs=144.0
Q ss_pred CCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEec
Q 044773 10 LKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVYS 89 (289)
Q Consensus 10 ~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~s 89 (289)
++++++++++|+||||.+++ +++|.++|+++|+++++|++|+.. ....++.++ +.++++.|
T Consensus 156 ~~t~lv~i~~~~n~tG~~~~---~~~i~~~~~~~~~~~ivD~a~~~~----~~~~~~~~~------------~~d~~~~s 216 (398)
T TIGR03392 156 PRTRILALGQMSNVTGGCPD---LARAITLAHQYGAVVVVDGAQGVV----HGPPDVQAL------------DIDFYAFS 216 (398)
T ss_pred cCceEEEEECccccccccCC---HHHHHHHHHHcCCEEEEEhhhhcC----CCCCChhhc------------CCCEEEEe
Confidence 57899999999999999998 888999999999999999999742 112232222 44578889
Q ss_pred CccccCCCCceEEEEEecCHHHHHHHHhcc---------------------c--cCCCChHHHHHHHHHhCCchHHHHHH
Q 044773 90 LSKDLGLPGFRVGAIYSNDDTVVAAATKMS---------------------S--FGLVSSQTQYLLSALLSDKKFAQNYI 146 (289)
Q Consensus 90 ~sK~~g~~G~r~G~i~~~~~~~~~~~~~~~---------------------~--~~~~~~~~q~~~~~~l~~~~~~~~~~ 146 (289)
++|.+|.+| +||++++++.+ +.+.... . .++.+.....++..+++... +...
T Consensus 217 ~~K~~gp~G--~G~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~GT~~~~~~~a~~~al~~l~--~~g~ 291 (398)
T TIGR03392 217 GHKLYGPTG--IGVLYGKTELL-EAMPPWQGGGKMLSHVSFDGFIPQAVPHRFEAGTPNIAGVIGLSAALEWLT--DIDI 291 (398)
T ss_pred cccccCCCc--eEEEEEcHHHH-hhCCCeecCCceEeeccccccccCCChhhccCCCCCHHHHHHHHHHHHHHH--HhCH
Confidence 999888555 89999965443 3222110 0 12233345555555554321 1123
Q ss_pred HHHHHHHHHHHHHHHHHHHhc-CCceecCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCC------
Q 044773 147 SENKKRLKQRHRKLVSGLEKA-GISCLKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHC------ 219 (289)
Q Consensus 147 ~~~~~~~~~~~~~l~~~l~~~-g~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~------ 219 (289)
++..++.++.++++.+.|.++ |+++..+..+.++++.++.. . ..++...| .++||.+.+|..|..
T Consensus 292 ~~i~~~~~~l~~~l~~~l~~l~g~~~~~~~~~~i~~~~~~~~-~------~~~l~~~L-~~~gI~v~~g~~~~~~~~~~~ 363 (398)
T TIGR03392 292 AAAEAWSVSLADLAEERLAQLPGFRSFRCPGSSLLAFDFAGV-H------HSDLAALL-AESGIALRAGQHCAQPLMAAL 363 (398)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCeEEeCCCCCcEEEEEeCCc-C------HHHHHHHH-HhCCEEEecCccchHHHHHHh
Confidence 466677888888899999887 77766544445666665531 1 13466665 577999999987642
Q ss_pred CCCCeEEEEEec-CCHHHHHHHHHHHHHHHHH
Q 044773 220 TEPGWFRVCFAN-MSEDTLKLSMQRLKAFVDS 250 (289)
Q Consensus 220 ~~~~~~Ris~~~-~~~e~l~~~l~~l~~~l~~ 250 (289)
..++++|+|+.. ++++|++.+++.|++++++
T Consensus 364 g~~~~iRvS~~~~~t~~ei~~l~~~l~~~~~~ 395 (398)
T TIGR03392 364 GVSGTLRASFAPYNTQQDVDALVDAVGAALEL 395 (398)
T ss_pred CCCCEEEEEeeccCCHHHHHHHHHHHHHHHHH
Confidence 124799999965 7999999999999988775
No 141
>COG1448 TyrB Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism]
Probab=99.84 E-value=4.6e-19 Score=153.83 Aligned_cols=214 Identities=17% Similarity=0.273 Sum_probs=164.0
Q ss_pred HhhhCCCccEEEEeCC-CCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCC-CccChhhhhhccccccCCCCC
Q 044773 5 AQKRHLKVKGVLVTNP-SNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSP-GFVSIMEILKDRNCENTEVWN 82 (289)
Q Consensus 5 ~~~~~~~~~~i~l~~p-~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~-~~~~~~~~~~~~~~~~~d~~~ 82 (289)
.+++.+.-.+|++.-| |||||.-++.+++++|+++.++.+.+.+.|-||+++.-+.. .-..+..+.. ...
T Consensus 165 ~L~~a~~~~vvLLH~CcHNPTG~D~t~~qW~~l~~~~~~r~lip~~D~AYQGF~~GleeDa~~lR~~a~--------~~~ 236 (396)
T COG1448 165 DLKTAPEGSVVLLHGCCHNPTGIDPTEEQWQELADLIKERGLIPFFDIAYQGFADGLEEDAYALRLFAE--------VGP 236 (396)
T ss_pred HHHhCCCCCEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCCeeeeehhhhhhccchHHHHHHHHHHHH--------hCC
Confidence 4455556667777777 99999999999999999999999999999999998733311 1122333332 223
Q ss_pred ceEEEecCccccCCCCceEEEEE--ecCHHHHHHHH----h--ccccCCCChHHHHHHHHHhCCchH---HHHHHHHHHH
Q 044773 83 RVHIVYSLSKDLGLPGFRVGAIY--SNDDTVVAAAT----K--MSSFGLVSSQTQYLLSALLSDKKF---AQNYISENKK 151 (289)
Q Consensus 83 ~~i~i~s~sK~~g~~G~r~G~i~--~~~~~~~~~~~----~--~~~~~~~~~~~q~~~~~~l~~~~~---~~~~~~~~~~ 151 (289)
..++..|+||.||+-|.|+|++. +.++...+.+. . ...+++++..+..+++..|.+..+ +..++..+++
T Consensus 237 ~~lva~S~SKnfgLYgERVGa~~vva~~~~~a~~v~sqlk~~iR~~ySnPP~~Ga~vva~IL~~p~Lra~W~~El~~Mr~ 316 (396)
T COG1448 237 ELLVASSFSKNFGLYGERVGALSVVAEDAEEADRVLSQLKAIIRTNYSNPPAHGAAVVATILNNPELRAEWEQELEEMRQ 316 (396)
T ss_pred cEEEEehhhhhhhhhhhccceeEEEeCCHHHHHHHHHHHHHHHHhccCCCchhhHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 37889999999999999999964 45544433221 1 234555666888999999998764 2556778999
Q ss_pred HHHHHHHHHHHHHHhc----CCceecCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEE
Q 044773 152 RLKQRHRKLVSGLEKA----GISCLKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRV 227 (289)
Q Consensus 152 ~~~~~~~~l~~~l~~~----g~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ri 227 (289)
++.+.++.|++.|++. .+.+...+.|||.+..+.. +....|.+++||++.... ||
T Consensus 317 Ri~~mR~~lv~~L~~~~~~~~f~~i~~Q~GMFsy~Gls~-----------~QV~rLree~~IY~v~sG----------Ri 375 (396)
T COG1448 317 RILEMRQALVDALKALGAPRNFDFIISQRGMFSYTGLSP-----------EQVDRLREEFGIYLVASG----------RI 375 (396)
T ss_pred HHHHHHHHHHHHHHhhCCCcccchHhhcCceeecCCCCH-----------HHHHHHHHhccEEEecCC----------ee
Confidence 9999999999999985 4788889999999875552 477888999999988532 99
Q ss_pred EEecCCHHHHHHHHHHHHHH
Q 044773 228 CFANMSEDTLKLSMQRLKAF 247 (289)
Q Consensus 228 s~~~~~~e~l~~~l~~l~~~ 247 (289)
+++.+++..++.+.+.+.++
T Consensus 376 ~vaGl~~~ni~~va~ai~~v 395 (396)
T COG1448 376 NVAGLNTSNIDYVAKAIAAV 395 (396)
T ss_pred eeccCChhhHHHHHHHHHhh
Confidence 99878999999999998875
No 142
>PTZ00125 ornithine aminotransferase-like protein; Provisional
Probab=99.83 E-value=3.6e-19 Score=162.83 Aligned_cols=219 Identities=16% Similarity=0.134 Sum_probs=140.9
Q ss_pred hHHHhhhCCCccEEEEeCCCCCCccCCC-HHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCC
Q 044773 2 YQLAQKRHLKVKGVLVTNPSNPLGTTMS-RNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEV 80 (289)
Q Consensus 2 l~~~~~~~~~~~~i~l~~p~NPtG~~~~-~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 80 (289)
+++++. .+++++|++++++||||.+++ .+.+++|.++|++||+++|+||+|.+++++|..+. ....
T Consensus 170 le~~l~-~~~~~~v~~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~lli~Dev~~g~g~~G~~~~--~~~~---------- 236 (400)
T PTZ00125 170 LEKLLQ-DPNVAAFIVEPIQGEAGVIVPDDGYLKQVYELCKKYNVLLIVDEIQTGLGRTGKLLA--HDHE---------- 236 (400)
T ss_pred HHHHhC-CCCeEEEEEcCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCccchhhH--HHhc----------
Confidence 455554 347899888877999999996 55699999999999999999999987755554211 1111
Q ss_pred CCceEEEecCccccCCCCceEEEEEecCHHHHHHHHhc--cccCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHH
Q 044773 81 WNRVHIVYSLSKDLGLPGFRVGAIYSNDDTVVAAATKM--SSFGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHR 158 (289)
Q Consensus 81 ~~~~i~i~s~sK~~g~~G~r~G~i~~~~~~~~~~~~~~--~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 158 (289)
+....+.++||.++.+++|+||++++++ +.+.+... ...+..+++.+.++.+.++... + ....++.+++.+
T Consensus 237 -~~~pd~~~~sK~l~~g~~~ig~v~~~~~-~~~~~~~~~~~~t~~~~~~~~~aa~~~l~~i~---~--~~~~~~~~~~~~ 309 (400)
T PTZ00125 237 -GVKPDIVLLGKALSGGLYPISAVLANDD-VMLVIKPGEHGSTYGGNPLACAVAVEALEVLK---E--EKLAENAQRLGE 309 (400)
T ss_pred -CCCCCEEEEcccccCCCcCcEEEEEcHH-HHhhccCCCCCCCCCcCHHHHHHHHHHHHHHH---h--cCHHHHHHHHHH
Confidence 1111134578999843359999999654 44443322 2223367777777766554321 1 012233444445
Q ss_pred HHHHHHHhc----CCc-eecCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEEe-cC
Q 044773 159 KLVSGLEKA----GIS-CLKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFA-NM 232 (289)
Q Consensus 159 ~l~~~l~~~----g~~-~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ris~~-~~ 232 (289)
++.+.|++. ++. ...+ .|.+.++.++.... .+..+++..|+ ++||.+.|+. .+++||++. ..
T Consensus 310 ~l~~~l~~l~~~~~~~~~~~~-~g~~~~v~~~~~~~----~~~~~~~~~l~-~~Gv~v~~~~------~~~lRi~~~~~~ 377 (400)
T PTZ00125 310 VFRDGLKELLKKSPWVKEIRG-KGLLNAIVFDHSDG----VNAWDLCLKLK-ENGLLAKPTH------DNIIRFAPPLVI 377 (400)
T ss_pred HHHHHHHHHHhcCCCeEEEec-ccEEEEEEEccCcc----hHHHHHHHHHH-HCCeEEeecC------CCEEEEECCccC
Confidence 555555442 322 2333 45677777753211 22346777777 6699998852 468999984 36
Q ss_pred CHHHHHHHHHHHHHHHHHHH
Q 044773 233 SEDTLKLSMQRLKAFVDSIT 252 (289)
Q Consensus 233 ~~e~l~~~l~~l~~~l~~~~ 252 (289)
+++++++++++|.+++.+..
T Consensus 378 ~~~~i~~~l~~l~~~l~~~~ 397 (400)
T PTZ00125 378 TKEQLDQALEIIKKVLKSFD 397 (400)
T ss_pred CHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999888764
No 143
>PRK02936 argD acetylornithine aminotransferase; Provisional
Probab=99.83 E-value=5.1e-19 Score=160.66 Aligned_cols=204 Identities=16% Similarity=0.159 Sum_probs=141.1
Q ss_pred CCccEEEEeCCCCCCccC-CCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEe
Q 044773 10 LKVKGVLVTNPSNPLGTT-MSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVY 88 (289)
Q Consensus 10 ~~~~~i~l~~p~NPtG~~-~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~ 88 (289)
+++++|++..+++++|.. .+.+++++|.++|+++|+++|+||+|.++.+++... +. +.... ..+ +.
T Consensus 166 ~~~~~ii~e~i~~~~G~~~~~~~~l~~l~~l~~~~~~~lI~DEv~~g~g~~g~~~-~~-~~~~~-------~~d----i~ 232 (377)
T PRK02936 166 EEVAAVMLEVVQGEGGVIPADPAFLQEVQTLCKKFGALLIIDEVQTGIGRTGTLF-AY-EQFGL-------DPD----IV 232 (377)
T ss_pred CCeEEEEEecccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCchhh-HH-HhhCC-------CCc----EE
Confidence 467888888779998877 578999999999999999999999999876655421 21 11110 112 44
Q ss_pred cCccccCCCCceEEEEEecCHHHHHHHHhcc--ccCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 044773 89 SLSKDLGLPGFRVGAIYSNDDTVVAAATKMS--SFGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEK 166 (289)
Q Consensus 89 s~sK~~g~~G~r~G~i~~~~~~~~~~~~~~~--~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 166 (289)
+|||+++ +|+|+||++++ +.+.+.+.... ..+..|++.|.++.++++.... ....+.++++.+++++.|++
T Consensus 233 t~sK~l~-~G~~ig~v~~~-~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~~~~-----~~~~~~~~~~~~~l~~~L~~ 305 (377)
T PRK02936 233 TVAKGLG-NGIPVGAMIGK-KELGTAFGPGSHGSTFGGNPLAMAAAKEVLQVIKQ-----PSFLEEVQEKGEYFLQKLQE 305 (377)
T ss_pred EEccccc-CCCccEEEEEc-HHHHhhccCCCCCCCCCCCHHHHHHHHHHHHHHHh-----ccHHHHHHHHHHHHHHHHHH
Confidence 7999999 99999999995 45555443322 2234788999999888875421 22335556666666666665
Q ss_pred c--CCcee--cCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEE-ecCCHHHHHHHH
Q 044773 167 A--GISCL--KSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCF-ANMSEDTLKLSM 241 (289)
Q Consensus 167 ~--g~~~~--~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ris~-~~~~~e~l~~~l 241 (289)
. ++... ....|+++|+++++. ...+...+ .++||.+.|+. .+++||++ ..++++++++++
T Consensus 306 ~~~~~~~~~~v~~~g~~~~i~~~~~--------~~~~~~~l-~~~gv~v~~~g------~~~lRi~p~~~~~~~~i~~~i 370 (377)
T PRK02936 306 ELEHLECVKNIRGKGLMIGIECTEE--------VAPVIEQL-REEGLLVLSAG------PNVIRLLPPLVVTKEELDQAV 370 (377)
T ss_pred HHhhCCcEEeEeecceEEEEEecch--------HHHHHHHH-HHCCeEEecCC------CCEEEEECCcccCHHHHHHHH
Confidence 3 23221 123468899998742 13455555 57799998742 46899997 347999999999
Q ss_pred HHHHHHH
Q 044773 242 QRLKAFV 248 (289)
Q Consensus 242 ~~l~~~l 248 (289)
++|.+++
T Consensus 371 ~~l~~~~ 377 (377)
T PRK02936 371 YLLKKVL 377 (377)
T ss_pred HHHHHhC
Confidence 9998753
No 144
>PLN02721 threonine aldolase
Probab=99.83 E-value=1.2e-18 Score=156.67 Aligned_cols=210 Identities=15% Similarity=0.186 Sum_probs=134.7
Q ss_pred CCccEEEEeCC-CCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEe
Q 044773 10 LKVKGVLVTNP-SNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVY 88 (289)
Q Consensus 10 ~~~~~i~l~~p-~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~ 88 (289)
+++++|++++| +||||.+++.+++++|+++|+++|+++|+|++|...... ....+...... +...++.
T Consensus 136 ~~~~~v~l~~~~~np~G~~~~~~~l~~l~~l~~~~g~~livD~a~~~~~~~-~~~~~~~~~~~----------~~d~~~~ 204 (353)
T PLN02721 136 PTTRLICLENTHANCGGRCLSVEYTDKVGELAKRHGLKLHIDGARIFNASV-ALGVPVHRLVK----------AADSVSV 204 (353)
T ss_pred CcceEEEEeccccccCCccccHHHHHHHHHHHHHcCCEEEEEchhhhcchh-hhCCCHHHHhh----------hCCEEEE
Confidence 57899999886 789999999999999999999999999999998622110 01112222211 2234566
Q ss_pred cCccccCCCCceEEEEEecCHHHHHHHHhccccCC--CChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 044773 89 SLSKDLGLPGFRVGAIYSNDDTVVAAATKMSSFGL--VSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEK 166 (289)
Q Consensus 89 s~sK~~g~~G~r~G~i~~~~~~~~~~~~~~~~~~~--~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 166 (289)
|+||.++. ++|+++..++.+.+.+........ .+...+.+++.+.. + +++.++.++ ..++++++.+.|++
T Consensus 205 s~sK~l~~---~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---l-~~~~~~~~~-~~~~~~~l~~~L~~ 276 (353)
T PLN02721 205 CLSKGLGA---PVGSVIVGSKSFIRKAKRLRKTLGGGMRQVGVLAAAALVA---L-QENVPKLED-DHKKAKLLAEGLNQ 276 (353)
T ss_pred ecccccCC---ceeeEEecCHHHHHhHHHHHHhcCCCeehhHHHHHHHHHH---H-HHHHHHHHH-HHHHHHHHHHHHHh
Confidence 89999974 357644334555554433322211 22223332222221 1 333444333 35667889999988
Q ss_pred c-CCce--ecCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEEe-cCCHHHHHHHHH
Q 044773 167 A-GISC--LKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFA-NMSEDTLKLSMQ 242 (289)
Q Consensus 167 ~-g~~~--~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ris~~-~~~~e~l~~~l~ 242 (289)
+ ++.+ .++.+ .++|++++.... .+...++..|. ++||.+.|+. ..++|++++ .+++++++++++
T Consensus 277 ~~~~~~~~~~~~~-~~~~~~~~~~~~----~~~~~~~~~L~-~~gi~v~~~~------~~~lR~~~~~~~~~~~i~~~~~ 344 (353)
T PLN02721 277 IKGLRVNVAAVET-NIVYFDITDGSR----ITAEKLCKSLE-EHGVLLMPGN------SSRIRVVTHHQISDSDVQYTLS 344 (353)
T ss_pred CCCcEEecCCccc-eEEEEEccCCcc----ccHHHHHHHHH-hCCcEEecCC------CceEEEEecCcCCHHHHHHHHH
Confidence 7 6644 34444 568888875211 12246788776 7799999874 458999996 479999999999
Q ss_pred HHHHHHHH
Q 044773 243 RLKAFVDS 250 (289)
Q Consensus 243 ~l~~~l~~ 250 (289)
+|++++..
T Consensus 345 ~l~~~~~~ 352 (353)
T PLN02721 345 CFQQAALT 352 (353)
T ss_pred HHHHHhhc
Confidence 99987653
No 145
>PRK07505 hypothetical protein; Provisional
Probab=99.83 E-value=1.4e-18 Score=159.03 Aligned_cols=215 Identities=14% Similarity=0.126 Sum_probs=133.3
Q ss_pred CccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEecC
Q 044773 11 KVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVYSL 90 (289)
Q Consensus 11 ~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~s~ 90 (289)
+++++++++|+||||.+++ +++|.++|+++++++|+||+|+...++........+.... +..+++++++|+
T Consensus 179 ~~~~~vl~~p~~~~G~~~~---~~~i~~l~~~~~~~li~DEa~~~~~~g~~g~~~~~~~~~~------~~~d~~i~~~s~ 249 (402)
T PRK07505 179 NKTVAYVADGVYSMGGIAP---VKELLRLQEKYGLFLYIDDAHGLSIYGKNGEGYVRSELDY------RLNERTIIAASL 249 (402)
T ss_pred CCCEEEEEecccccCCcCC---HHHHHHHHHHcCCEEEEECcccccCcCCCCCchHHHHcCC------CCCCCeEEEEec
Confidence 4688999999999999999 7888999999999999999996433321111111122210 135778999999
Q ss_pred ccccCCCCceEEEEEecCHHHHHHHHhccccC----CCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 044773 91 SKDLGLPGFRVGAIYSNDDTVVAAATKMSSFG----LVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEK 166 (289)
Q Consensus 91 sK~~g~~G~r~G~i~~~~~~~~~~~~~~~~~~----~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 166 (289)
||++|.+| ||++++++.+.+.+....... ..+++...++.+.++... ++++.+..+.++++.+.+.+.+..
T Consensus 250 sK~~~~~G---g~~~~~~~~~~~~~~~~~~~~t~~~~~~~~a~aa~~a~l~~~~--~~~~~~~~~~l~~~~~~~~~~~~~ 324 (402)
T PRK07505 250 GKAFGASG---GVIMLGDAEQIELILRYAGPLAFSQSLNVAALGAILASAEIHL--SEELDQLQQKLQNNIALFDSLIPT 324 (402)
T ss_pred hhhhhccC---eEEEeCCHHHHHHHHHhCCCceeCCCCCHHHHHHHHHHHHHHh--ccCcHHHHHHHHHHHHHHHHHHHh
Confidence 99999777 898775666666555432221 133455555555443110 222344455566665544433321
Q ss_pred cCCceecCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCC-CCCCeEEEEEec-CCHHHHHHHHHHH
Q 044773 167 AGISCLKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHC-TEPGWFRVCFAN-MSEDTLKLSMQRL 244 (289)
Q Consensus 167 ~g~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~-~~~~~~Ris~~~-~~~e~l~~~l~~l 244 (289)
. ....+.++.++.+... ....++...|+ +.||.+.++..+.. .++.++||+++. ++++++++++++|
T Consensus 325 ~----~~g~~~~i~~~~~~~~------~~~~~~~~~l~-~~Gi~v~~~~~p~~~~~~~~lRi~~~~~~t~eei~~~~~~l 393 (402)
T PRK07505 325 E----QSGSFLPIRLIYIGDE------DTAIKAAKQLL-DRGFYTSPVFFPVVAKGRAGLRIMFRASHTNDEIKRLCSLL 393 (402)
T ss_pred c----CCCCCCCEEEEEeCCH------HHHHHHHHHHH-HCCCeEeeecCCCCCCCCceEEEecCccCCHHHHHHHHHHH
Confidence 1 1122222233333221 12245777777 66999998744332 234689999964 6999999999999
Q ss_pred HHHHHH
Q 044773 245 KAFVDS 250 (289)
Q Consensus 245 ~~~l~~ 250 (289)
.+++++
T Consensus 394 ~~~l~~ 399 (402)
T PRK07505 394 KEILDE 399 (402)
T ss_pred HHHHHh
Confidence 988754
No 146
>cd00610 OAT_like Acetyl ornithine aminotransferase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to ornithine aminotransferase, acetylornithine aminotransferase, alanine-glyoxylate aminotransferase, dialkylglycine decarboxylase, 4-aminobutyrate aminotransferase, beta-alanine-pyruvate aminotransferase, adenosylmethionine-8-amino-7-oxononanoate aminotransferase, and glutamate-1-semialdehyde 2,1-aminomutase. All the enzymes belonging to this family act on basic amino acids and their derivatives are involved in transamination or decarboxylation.
Probab=99.83 E-value=3.7e-19 Score=163.32 Aligned_cols=219 Identities=16% Similarity=0.153 Sum_probs=138.7
Q ss_pred hHHHhhhCCCccEEEEeCC-CCCCccCC-CHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCC
Q 044773 2 YQLAQKRHLKVKGVLVTNP-SNPLGTTM-SRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTE 79 (289)
Q Consensus 2 l~~~~~~~~~~~~i~l~~p-~NPtG~~~-~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d 79 (289)
+++++..+++...+++++| +|++|.++ +.+++++|.++|+++++++|+||+|++++..+... . .+..
T Consensus 181 l~~~l~~~~~~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~Dev~~g~g~~g~~~-~-~~~~--------- 249 (413)
T cd00610 181 LEEALEEHPEEVAAVIVEPIQGEGGVIVPPPGYLKALRELCRKHGILLIADEVQTGFGRTGKMF-A-FEHF--------- 249 (413)
T ss_pred HHHHHhcCCCCEEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCcchh-h-Hhhc---------
Confidence 3445554433334455566 67789876 67789999999999999999999999764433321 1 1111
Q ss_pred CCCceEEEecCccccCCCCceEEEEEecCHHHHHHH--Hhcc--ccCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHH
Q 044773 80 VWNRVHIVYSLSKDLGLPGFRVGAIYSNDDTVVAAA--TKMS--SFGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQ 155 (289)
Q Consensus 80 ~~~~~i~i~s~sK~~g~~G~r~G~i~~~~~~~~~~~--~~~~--~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~ 155 (289)
+....+.|+||+++ +|+|+||++++ +.+.+.+ .... .....+++.+.++.+.++.. .+ .+..+++++
T Consensus 250 --~~~~d~~t~sK~l~-~g~~~g~~~~~-~~~~~~~~~~~~~~~~t~~~~~~~~~a~~a~l~~l---~~--~~~~~~~~~ 320 (413)
T cd00610 250 --GVEPDIVTLGKGLG-GGLPLGAVLGR-EEIMDAFPAGPGLHGGTFGGNPLACAAALAVLEVL---EE--EGLLENAAE 320 (413)
T ss_pred --CCCCCeEEEccccc-CccccEEEEEc-HHHHHhhccCCCCCCCCCCcCHHHHHHHHHHHHHH---Hh--ccHHHHHHH
Confidence 11223568999998 58999999995 4555543 2221 22336677777776666432 11 234556666
Q ss_pred HHHHHHHHHHhc----CCceecCCceEEEEEecCcccc--CCChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEE
Q 044773 156 RHRKLVSGLEKA----GISCLKSNAGLFCWVDMRHLLS--SNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCF 229 (289)
Q Consensus 156 ~~~~l~~~l~~~----g~~~~~~~~g~~~~i~~~~~~~--~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ris~ 229 (289)
+.+++.+.|++. ++.......|.++++.+..... .........++..|+ ++||.+.|+. ...+|+++
T Consensus 321 ~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~gv~v~~~~------~~~lR~~~ 393 (413)
T cd00610 321 LGEYLRERLRELAEKHPLVGDVRGRGLMIGIELVKDRATKPPDKELAAKIIKAAL-ERGLLLRPSG------GNVIRLLP 393 (413)
T ss_pred HHHHHHHHHHHHHhhCCcEEEeecCceEEEEEEecCCCcCCcchHHHHHHHHHHH-HCCeEEeecC------CCEEEEEC
Confidence 666666666654 2222223345677777764311 000122345777666 6699999875 46799998
Q ss_pred ec-CCHHHHHHHHHHHHHH
Q 044773 230 AN-MSEDTLKLSMQRLKAF 247 (289)
Q Consensus 230 ~~-~~~e~l~~~l~~l~~~ 247 (289)
+. +++++++++++++.++
T Consensus 394 ~~~~t~~~i~~~~~~l~~~ 412 (413)
T cd00610 394 PLIITEEEIDEGLDALDEA 412 (413)
T ss_pred CCcCCHHHHHHHHHHHHHh
Confidence 54 6899999999999875
No 147
>PRK02948 cysteine desulfurase; Provisional
Probab=99.82 E-value=4.6e-19 Score=161.18 Aligned_cols=211 Identities=14% Similarity=0.157 Sum_probs=147.1
Q ss_pred CCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEec
Q 044773 10 LKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVYS 89 (289)
Q Consensus 10 ~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~s 89 (289)
+++++|++++|+||||.+++ +++|.++|+++|+++++|+++.. +.....+. ..+.++++.|
T Consensus 137 ~~~~lv~~~~~~n~tG~~~~---~~~I~~l~~~~~~~vivD~~~~~----g~~~~~~~------------~~~~d~~~~s 197 (381)
T PRK02948 137 PDTVLASIQHANSEIGTIQP---IAEIGALLKKYNVLFHSDCVQTF----GKLPIDVF------------EMGIDSLSVS 197 (381)
T ss_pred CCCEEEEEECCcCCcEeehh---HHHHHHHHHHcCCEEEEEChhhc----cccccCcc------------cCCCCEEEec
Confidence 46889999999999999998 78899999999999999987762 22222221 2356788999
Q ss_pred CccccCCCCceEEEEEecCHHHHHHHH------hccccCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHH
Q 044773 90 LSKDLGLPGFRVGAIYSNDDTVVAAAT------KMSSFGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSG 163 (289)
Q Consensus 90 ~sK~~g~~G~r~G~i~~~~~~~~~~~~------~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~ 163 (289)
++|.+|.+| +|+++++++....... .....++.|.+.+.++..+++.. .+++++.++++++.++++.+.
T Consensus 198 ~~K~~gp~G--~G~l~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~a~~~al~~~---~~~~~~~~~~~~~~~~~l~~~ 272 (381)
T PRK02948 198 AHKIYGPKG--VGAVYINPQVRWKPVFPGTTHEKGFRPGTVNVPGIAAFLTAAENI---LKNMQEESLRFKELRSYFLEQ 272 (381)
T ss_pred HHhcCCCCc--EEEEEEcCCCCCCCcccCCCCCCCcCCCCccHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
Confidence 999998777 8999886543111111 00123446778888888877653 346788889999999999999
Q ss_pred HHhcCCceecCC-ceEE----EEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCC-----------------CC
Q 044773 164 LEKAGISCLKSN-AGLF----CWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHC-----------------TE 221 (289)
Q Consensus 164 l~~~g~~~~~~~-~g~~----~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~-----------------~~ 221 (289)
|+++|+++.... ..+. +.+.++. . +..++...| +++||.+.+|..|.. ..
T Consensus 273 L~~~~~~v~~~~~~~~~~~~i~~~~~~~-~------~~~~~~~~l-~~~gI~v~~g~~c~~~~~~p~~~~~~~~~~~~~~ 344 (381)
T PRK02948 273 IQTLPLPIEVEGHSTSCLPHIIGVTIKG-I------EGQYTMLEC-NRRGIAISTGSACQVGKQEPSKTMLAIGKTYEEA 344 (381)
T ss_pred HhcCCCCEEEeCCCccCcCCEEEEEeCC-C------CHHHHHHhc-ccCCEEEEchHhcCCCCCCCCHHHHHcCCChHHh
Confidence 999887655432 2211 1112221 1 123455555 577999998886422 01
Q ss_pred CCeEEEEEec-CCHHHHHHHHHHHHHHHHHHH
Q 044773 222 PGWFRVCFAN-MSEDTLKLSMQRLKAFVDSIT 252 (289)
Q Consensus 222 ~~~~Ris~~~-~~~e~l~~~l~~l~~~l~~~~ 252 (289)
.+++|||++. ++++|++.+++.|+++++++-
T Consensus 345 ~~~lRis~~~~~t~~di~~l~~~l~~~~~~~~ 376 (381)
T PRK02948 345 KQFVRFSFGQQTTKDQIDTTIHALETIGNQFY 376 (381)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHHHHHHHHh
Confidence 4689999965 799999999999999877654
No 148
>cd06502 TA_like Low-specificity threonine aldolase (TA). This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). TA catalyzes the conversion of L-threonine or L-allo-threonine to glycine and acetaldehyde in a secondary glycine biosynthetic pathway.
Probab=99.82 E-value=1.2e-18 Score=155.75 Aligned_cols=205 Identities=19% Similarity=0.143 Sum_probs=134.7
Q ss_pred CCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEec
Q 044773 10 LKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVYS 89 (289)
Q Consensus 10 ~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~s 89 (289)
+++++|+++||||| |.+++.+++++|+++|+++|+++|+|++|......... .++..+. .+..+++.|
T Consensus 126 ~~~~~v~l~~p~n~-g~~~~~~~l~~i~~~~~~~~~~livDea~~~~~~~~~~-~~~~~~~----------~~~d~~~~s 193 (338)
T cd06502 126 PPPSLVSLENTTEG-GTVYPLDELKAISALAKENGLPLHLDGARLANAAAALG-VALKTYK----------SGVDSVSFC 193 (338)
T ss_pred CcceEEEEEeecCC-ccccCHHHHHHHHHHHHHcCCeEeechHHHHHHHHhcC-CCHHHHH----------hcCCEEEEe
Confidence 36899999999998 66779999999999999999999999998532111111 1222221 123356889
Q ss_pred CccccCCCCceEEEEEecCHHHHHHHHhcc-cc---CCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044773 90 LSKDLGLPGFRVGAIYSNDDTVVAAATKMS-SF---GLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLE 165 (289)
Q Consensus 90 ~sK~~g~~G~r~G~i~~~~~~~~~~~~~~~-~~---~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 165 (289)
+||++|++| |++++.++.+.+.+.... .+ ...+++.+.++...++...+ .+..+++.++++++.+.|+
T Consensus 194 ~sK~~~~~~---g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~L~~~~~-----~~~~~~~~~~~~~l~~~L~ 265 (338)
T cd06502 194 LSKGGGAPV---GAVVVGNRDFIARARRRRKQAGGGMRQSGFLAAAGLAALENDLW-----LRRLRHDHEMARRLAEALE 265 (338)
T ss_pred ccccCCCcc---ceEEECCHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHhcCchH-----HHHHHHHHHHHHHHHHHHH
Confidence 999999887 665443555555554332 11 12455666777777765433 3344567777789999999
Q ss_pred hcCCceecCCceEEEEEecCccccCCChhhHHHHHHHHH--HhcCeEEeCCCCCCCCCCCeEEEEEec-CCHHHHHHHHH
Q 044773 166 KAGISCLKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIV--YDVKLNISPGSSCHCTEPGWFRVCFAN-MSEDTLKLSMQ 242 (289)
Q Consensus 166 ~~g~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll--~~~gi~v~pg~~f~~~~~~~~Ris~~~-~~~e~l~~~l~ 242 (289)
++|+.+.++.+++.+ +.++.. . ....++...+. .++|+.+.+.. .+++||++.. +++++++++++
T Consensus 266 ~~~~~~~~~~~~~~~-v~~~~~--~---~~~~~l~~~l~~~~~~gi~~~~~~------~~~lRi~~~~~~~~~~i~~~~~ 333 (338)
T cd06502 266 ELGGLESEVQTNIVL-LDPVEA--N---AVFVELSKEAIERRGEGVLFYAWG------EGGVRFVTHWDTTEEDVDELLS 333 (338)
T ss_pred hcCCCcccccCCeEE-EecCCc--c---HHHHHHHHHHHHhhhCCEEEEecC------CCeEEEEeecCCCHHHHHHHHH
Confidence 888776667766544 555421 1 00112333322 15699987642 2689999965 68999999999
Q ss_pred HHHH
Q 044773 243 RLKA 246 (289)
Q Consensus 243 ~l~~ 246 (289)
++++
T Consensus 334 ~l~~ 337 (338)
T cd06502 334 ALKA 337 (338)
T ss_pred HHhc
Confidence 8864
No 149
>PRK12381 bifunctional succinylornithine transaminase/acetylornithine transaminase; Provisional
Probab=99.82 E-value=8.5e-19 Score=160.62 Aligned_cols=210 Identities=18% Similarity=0.187 Sum_probs=145.3
Q ss_pred CccEEEEeCCCCCCccCC--CHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEe
Q 044773 11 KVKGVLVTNPSNPLGTTM--SRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVY 88 (289)
Q Consensus 11 ~~~~i~l~~p~NPtG~~~--~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~ 88 (289)
++.+|++ +|.||+|-++ +.+.+++|.++|++||+++|+||+|.+++++|..+ .. +.. +....+.
T Consensus 183 ~~aavii-EPv~~~gg~~~~~~~~l~~l~~l~~~~~~llI~DEv~tG~gr~G~~~-~~-~~~-----------~v~pDi~ 248 (406)
T PRK12381 183 QTCAVIV-EPIQGEGGVIPADKAFLQGLRELCDRHNALLIFDEVQTGVGRTGELY-AY-MHY-----------GVTPDVL 248 (406)
T ss_pred CeeEEEE-eCCcCCCCCcCCCHHHHHHHHHHHHHcCCEEEEcchhhCCCCCcchh-hh-Hhh-----------CCCCCEE
Confidence 5666555 7999997655 78999999999999999999999998876666432 11 111 1112246
Q ss_pred cCccccCCCCceEEEEEecCHHHHHHHHhc--cccCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 044773 89 SLSKDLGLPGFRVGAIYSNDDTVVAAATKM--SSFGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEK 166 (289)
Q Consensus 89 s~sK~~g~~G~r~G~i~~~~~~~~~~~~~~--~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 166 (289)
||||++| +|+|+||+++++ .+.+.+... ...+..+++.+.++.+.++.. . -.+.+++++++.+++.+.|++
T Consensus 249 t~sK~l~-gG~~ig~~~~~~-~~~~~~~~~~~~~t~~~~pl~~aaa~a~l~~l---~--~~~~~~~~~~~~~~l~~~L~~ 321 (406)
T PRK12381 249 TTAKALG-GGFPIGAMLTTE-KCASVMTVGTHGTTYGGNPLASAVAGKVLELI---N--TPEMLNGVKQRHDWFVERLNT 321 (406)
T ss_pred Eehhhhh-CCCceEEEEEcH-HHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHH---h--hccHHHHHHHHHHHHHHHHHH
Confidence 9999998 899999999964 455544332 222346888888888876532 1 124567788888888888877
Q ss_pred cC--Cc--eecCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEEec-CCHHHHHHHH
Q 044773 167 AG--IS--CLKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFAN-MSEDTLKLSM 241 (289)
Q Consensus 167 ~g--~~--~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ris~~~-~~~e~l~~~l 241 (289)
++ .. ......|+++++.+..... .....+...+. ++||.+.++ +++.+||+++. ++++++++++
T Consensus 322 l~~~~~~~~~vrg~Gl~~~~~l~~~~~----~~~~~~~~~l~-~~Gv~v~~~------g~~~lRl~p~~~~t~~~i~~~~ 390 (406)
T PRK12381 322 INARYGLFSEIRGLGLLIGCVLNAEYA----GKAKQISQEAA-KAGVMVLIA------GPNVVRFAPALNISEEEITTGL 390 (406)
T ss_pred HHhhCCCEEEEecCeEEEEEEecCchh----hHHHHHHHHHH-HCCcEEeeC------CCCEEEEeCCccCCHHHHHHHH
Confidence 53 22 1223447788888764211 11234555554 779999763 23589999965 7999999999
Q ss_pred HHHHHHHHHHH
Q 044773 242 QRLKAFVDSIT 252 (289)
Q Consensus 242 ~~l~~~l~~~~ 252 (289)
++|.+++++..
T Consensus 391 ~~l~~~l~~~~ 401 (406)
T PRK12381 391 DRFARACERFV 401 (406)
T ss_pred HHHHHHHHHHH
Confidence 99999987654
No 150
>cd00378 SHMT Serine-glycine hydroxymethyltransferase (SHMT). This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). SHMT carries out interconversion of serine and glycine; it catalyzes the transfer of hydroxymethyl group of N5, N10-methylene tetrahydrofolate to glycine resulting in the formation of serine and tetrahydrofolate. Both eukaryotic and prokaryotic SHMT enzymes form tight obligate homodimers; the mammalian enzyme forms a homotetramer comprising four pyridoxal phosphate-bound active sites.
Probab=99.82 E-value=3.8e-18 Score=156.19 Aligned_cols=221 Identities=12% Similarity=0.089 Sum_probs=145.4
Q ss_pred hHHHhhhCCCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCC-CCCccCCCCccChhhhhhccccccCCC
Q 044773 2 YQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIY-SGTVFSSPGFVSIMEILKDRNCENTEV 80 (289)
Q Consensus 2 l~~~~~~~~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~-~~~~~~~~~~~~~~~~~~~~~~~~~d~ 80 (289)
+++++.. ++++++++++|+||+ ..+ +++|+++|+++|+++|+|++| .++.+.+.....+.
T Consensus 153 l~~~i~~-~~~~~v~~~~~~~~~--~~~---~~~I~~l~~~~~~~li~D~a~~~g~~~~g~~~~~~~------------- 213 (402)
T cd00378 153 LEKMALE-FKPKLIVAGASAYPR--PID---FKRFREIADEVGAYLLVDMAHVAGLVAGGVFPNPLP------------- 213 (402)
T ss_pred HHHHHHh-CCCCEEEecCcccCC--CcC---HHHHHHHHHhcCCEEEEEccchhhhhhcccCCCccc-------------
Confidence 3444443 378999999998864 334 899999999999999999997 33323332111111
Q ss_pred CCceEEEecCccccCCCCceEEEEEecCHHHHHHHHhcc-ccCCCCh--HHHHHHHHHhCCchHHHHHHHHHHHHHHHHH
Q 044773 81 WNRVHIVYSLSKDLGLPGFRVGAIYSNDDTVVAAATKMS-SFGLVSS--QTQYLLSALLSDKKFAQNYISENKKRLKQRH 157 (289)
Q Consensus 81 ~~~~i~i~s~sK~~g~~G~r~G~i~~~~~~~~~~~~~~~-~~~~~~~--~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 157 (289)
...++++|+||++ +|.|.||++++++.+.+.+.... .....++ ....++..++... ......+.++.+++++
T Consensus 214 -~~dv~~~s~sK~l--~G~~gg~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~al~~~--~~~~~~~~~~~~~~~~ 288 (402)
T cd00378 214 -GADVVTTTTHKTL--RGPRGGLILTRKGELAKKINSAVFPGLQGGPHLHVIAAKAVALKEA--LEPEFKAYAKQVVENA 288 (402)
T ss_pred -CCcEEEeccccCC--CCCCceEEEeccHHHHHHHHHHhCccccCCchHHHHHHHHHHHHHH--hhHHHHHHHHHHHHHH
Confidence 1237899999987 67888999997745655554332 2221222 2222323333321 1224567778899999
Q ss_pred HHHHHHHHhcCCcee-cCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCC----CCCCeEEEEEec-
Q 044773 158 RKLVSGLEKAGISCL-KSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHC----TEPGWFRVCFAN- 231 (289)
Q Consensus 158 ~~l~~~l~~~g~~~~-~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~----~~~~~~Ris~~~- 231 (289)
+++.+.|.+.|+.+. .+.+++++|++++..... ...+..+++++||.+.++...+. ....++||++..
T Consensus 289 ~~l~~~L~~~g~~~~~~~~~~~~v~v~~~~~~~~------~~~~~~~l~~~gI~v~~~~~p~~~~~~~~~~~lRi~~~~~ 362 (402)
T cd00378 289 KALAEALKERGFKVVSGGTDNHLVLVDLRPKGIT------GKAAEDALEEAGITVNKNTLPWDPSSPFVPSGIRIGTPAM 362 (402)
T ss_pred HHHHHHHHhCCCeEeecCCCCeEEEEeCCccCCC------HHHHHHHHHHcCcEEcCCcCCCCCCCCCCCCeeEecCHHH
Confidence 999999999888875 467789999998743211 12334456788999986433221 234689999944
Q ss_pred ----CCHHHHHHHHHHHHHHHHHHH
Q 044773 232 ----MSEDTLKLSMQRLKAFVDSIT 252 (289)
Q Consensus 232 ----~~~e~l~~~l~~l~~~l~~~~ 252 (289)
+++++++.+++.|++++.+..
T Consensus 363 ~~~~~~~~di~~~~~~l~~~~~~~~ 387 (402)
T cd00378 363 TTRGMGEEEMEEIADFIARALKDAE 387 (402)
T ss_pred HHhCCCHHHHHHHHHHHHHHHhccc
Confidence 258999999999999876554
No 151
>PRK13479 2-aminoethylphosphonate--pyruvate transaminase; Provisional
Probab=99.82 E-value=4.7e-18 Score=153.80 Aligned_cols=219 Identities=15% Similarity=0.177 Sum_probs=145.5
Q ss_pred hHHHhhhCCCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCC
Q 044773 2 YQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVW 81 (289)
Q Consensus 2 l~~~~~~~~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 81 (289)
++++++.+++++++++++|+||||...+ +++|.++|+++++++|+|+++. ++ ....++.++
T Consensus 122 l~~~l~~~~~~~~v~~~~~~~~tG~~~~---~~~i~~l~~~~~~~livDa~~~---~g-~~~~~~~~~------------ 182 (368)
T PRK13479 122 VEAALAADPRITHVALVHCETTTGILNP---LDEIAAVAKRHGKRLIVDAMSS---FG-AIPIDIAEL------------ 182 (368)
T ss_pred HHHHHHhCCCCcEEEEEcccCccccccC---HHHHHHHHHHcCCEEEEEcccc---cC-Ccccccccc------------
Confidence 4455555557789999999999999999 8899999999999999997764 32 222232222
Q ss_pred CceEEEecCcccc-CCCCceEEEEEecCHHHHHHHHhc-------------------cccCCCChHHHHHHHHHhCCchH
Q 044773 82 NRVHIVYSLSKDL-GLPGFRVGAIYSNDDTVVAAATKM-------------------SSFGLVSSQTQYLLSALLSDKKF 141 (289)
Q Consensus 82 ~~~i~i~s~sK~~-g~~G~r~G~i~~~~~~~~~~~~~~-------------------~~~~~~~~~~q~~~~~~l~~~~~ 141 (289)
+..++++|++|.+ |.+| +||++++++.+. .+... ...++.+.....++..+++....
T Consensus 183 ~~d~~v~s~~K~l~g~~G--~G~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~l~~al~~l~~ 259 (368)
T PRK13479 183 GIDALISSANKCIEGVPG--FGFVIARRSELE-ACKGNSRSLSLDLYDQWAYMEKTGQWRFTPPTHVVAAFYQALLELEE 259 (368)
T ss_pred CceEEEecCccccccCCC--ceEEEECHHHHH-HhhcCCCCeeecHHHHHhhhcccCCCCCCCcHHHHHHHHHHHHHHHH
Confidence 4457789999987 5567 699999655443 32211 11123454555555555543211
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCceecCC---ceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCC
Q 044773 142 AQNYISENKKRLKQRHRKLVSGLEKAGISCLKSN---AGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCH 218 (289)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~---~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~ 218 (289)
...+++..++++++++++.+.|+++|+++..+. .+....+.++.... .+..++...|. ++||.+.+|..+.
T Consensus 260 -~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~l~~~L~-~~gi~v~~g~~~~ 333 (368)
T PRK13479 260 -EGGVPARGARYANNQRTLVAGMRALGFEPLLDAEIQSPIIVTFHAPADPA----YDFKEFYERLK-EQGFVIYPGKLTQ 333 (368)
T ss_pred -hhCHHHHHHHHHHHHHHHHHHHHHcCCcccCCchhcCceEEEEECCCCCC----cCHHHHHHHHH-HCCEEEecCCCCC
Confidence 223566778899999999999999888765432 11122233332110 11235666665 6699999886542
Q ss_pred CCCCCeEEEEE-ecCCHHHHHHHHHHHHHHHHHH
Q 044773 219 CTEPGWFRVCF-ANMSEDTLKLSMQRLKAFVDSI 251 (289)
Q Consensus 219 ~~~~~~~Ris~-~~~~~e~l~~~l~~l~~~l~~~ 251 (289)
..++|++. +.+++++++.+++.|++++++.
T Consensus 334 ---~~~iRis~~~~~t~edi~~~l~~L~~~l~~~ 364 (368)
T PRK13479 334 ---VDTFRIGCIGDVDAADIRRLVAAIAEALYWM 364 (368)
T ss_pred ---CCEEEEecCCCCCHHHHHHHHHHHHHHHHHc
Confidence 46899986 6679999999999999988764
No 152
>COG0156 BioF 7-keto-8-aminopelargonate synthetase and related enzymes [Coenzyme metabolism]
Probab=99.82 E-value=2.1e-18 Score=154.37 Aligned_cols=223 Identities=17% Similarity=0.143 Sum_probs=158.2
Q ss_pred hHHHhhhCC----CccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhcccccc
Q 044773 2 YQLAQKRHL----KVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCEN 77 (289)
Q Consensus 2 l~~~~~~~~----~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (289)
||+.+++.+ +.++|+....-...|.+.+ |++|++++++|++++++||+|+...+ |+....+.+...-
T Consensus 158 Le~~l~~~~~~~~~~~~IvtegVfSMdGdiAp---L~~l~~L~~ky~a~L~VDEAHa~Gv~-G~~GrG~~e~~g~----- 228 (388)
T COG0156 158 LEALLEEARENGARRKLIVTEGVFSMDGDIAP---LPELVELAEKYGALLYVDEAHAVGVL-GPNGRGLAEHFGL----- 228 (388)
T ss_pred HHHHHHhhhccCCCceEEEEeccccCCCCcCC---HHHHHHHHHHhCcEEEEEcccccccc-CCCCccHHHHhCC-----
Confidence 566666521 3567777777777899999 99999999999999999999996545 5555566655431
Q ss_pred CCCCCceEEEecCccccCCCCceEEEEEecCHHHHHHH-HhccccCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHH
Q 044773 78 TEVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDTVVAAA-TKMSSFGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQR 156 (289)
Q Consensus 78 ~d~~~~~i~i~s~sK~~g~~G~r~G~i~~~~~~~~~~~-~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~ 156 (289)
...+.+++++||||+||..| ||+.++ +.+.+.+ ++..++...+++....+++++...+. .......+++++++
T Consensus 229 -~~~~vdi~~gTlsKAlGs~G---g~v~g~-~~~~d~L~~~ar~~ifStalpP~~aaa~~~al~~-l~~~~~~r~~L~~~ 302 (388)
T COG0156 229 -EPEEVDIIVGTLGKALGSSG---GYIAGS-AALIDYLRNRARPFIFSTALPPAVAAAALAALRI-LEEGPERRERLQEL 302 (388)
T ss_pred -CCccceEEEEEchhhhcccC---ceeeCc-HHHHHHHHHhCCceeccCCCCHHHHHHHHHHHHH-HHhCHHHHHHHHHH
Confidence 23466899999999999899 999995 5555554 44555544444444444444444333 33456778889999
Q ss_pred HHHHHHHHHhcCCceecCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCC-CCCCeEEEEEe-cCCH
Q 044773 157 HRKLVSGLEKAGISCLKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHC-TEPGWFRVCFA-NMSE 234 (289)
Q Consensus 157 ~~~l~~~l~~~g~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~-~~~~~~Ris~~-~~~~ 234 (289)
..++++.+...|+.+.+.... ++.+.+.+... ..++...|+++ ||.+.+..+... .+...+|+++. .+++
T Consensus 303 ~~~~~~~~~~~~~~~~~s~s~-I~pv~~gd~~~------a~~~s~~l~~~-Gi~v~~i~~PTVp~gtarlRi~lta~ht~ 374 (388)
T COG0156 303 AAFFRSLLKALGLVLLPSESP-IIPVILGDEER------ALEASRALLEE-GIYVSAIRPPTVPKGTARLRITLTAAHTE 374 (388)
T ss_pred HHHHHHHHHhcCCccCCCCCC-eeeeEeCCHHH------HHHHHHHHHHC-CeeEeeecCCCCCCCcceEEEEecCCCCH
Confidence 999998887778876555554 44455554322 25688888867 999987766543 34578999994 4899
Q ss_pred HHHHHHHHHHHHH
Q 044773 235 DTLKLSMQRLKAF 247 (289)
Q Consensus 235 e~l~~~l~~l~~~ 247 (289)
++++.+++.+.++
T Consensus 375 ~~I~~l~~~l~~~ 387 (388)
T COG0156 375 EDIDRLAEALSEV 387 (388)
T ss_pred HHHHHHHHHHHhh
Confidence 9999999998764
No 153
>cd00617 Tnase_like Tryptophanase family (Tnase). This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to tryptophanase (Tnase) and tyrosine phenol-lyase (TPL). Tnase and TPL are active as tetramers and catalyze beta-elimination reactions. Tnase catalyzes degradation of L-tryptophan to yield indole, pyruvate and ammonia and TPL catalyzes degradation of L-tyrosine to yield phenol, pyruvate and ammonia.
Probab=99.82 E-value=3.3e-18 Score=156.45 Aligned_cols=232 Identities=16% Similarity=0.193 Sum_probs=157.6
Q ss_pred hHHHhhhC--CCccEEEEeCCCCCC-ccCCCHHHHHHHHHHHHHcCCEEEEecCCCCC--cc-----CCCCccChhhhhh
Q 044773 2 YQLAQKRH--LKVKGVLVTNPSNPL-GTTMSRNELNLLVNFITEKNIHLISDEIYSGT--VF-----SSPGFVSIMEILK 71 (289)
Q Consensus 2 l~~~~~~~--~~~~~i~l~~p~NPt-G~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~--~~-----~~~~~~~~~~~~~ 71 (289)
|++++... +++++|++++|+||+ |++++.+++++|.++|+++|++||+|+++... .+ ++....++.++.
T Consensus 141 Le~~I~~~~~~~~~~I~v~~p~N~~gG~~~s~~~l~~i~eia~~~gi~li~DaAr~~~na~~i~~r~~g~~~~si~ei~- 219 (431)
T cd00617 141 LEKLIDEVGAENIPYIVLTITNNTAGGQPVSMANLREVRELAHKYGIPVVLDAARFAENAYFIKEREEGYRDKSIAEIA- 219 (431)
T ss_pred HHHHhCcccCCCccEEEEECCcCCCCCccCCHHHHHHHHHHHHHcCCEEEEEchhhHhhhhhhhcccccccCCCHHHHH-
Confidence 44555432 348899999999998 99999999999999999999999999996521 12 233344554442
Q ss_pred ccccccCCCCCceEEEecCccccCCCCce------EEEEEecCHHHHHHHHhcc-------ccCCCChHHHHHHHHHhCC
Q 044773 72 DRNCENTEVWNRVHIVYSLSKDLGLPGFR------VGAIYSNDDTVVAAATKMS-------SFGLVSSQTQYLLSALLSD 138 (289)
Q Consensus 72 ~~~~~~~d~~~~~i~i~s~sK~~g~~G~r------~G~i~~~~~~~~~~~~~~~-------~~~~~~~~~q~~~~~~l~~ 138 (289)
+.++|++|.+.++|+| -||++++++.+.+.++... .++..+.....+++..|.+
T Consensus 220 -------------~e~~s~sd~~~mS~~K~~~~~~GG~i~~~d~~l~~~~~~~~~~~~~~~~~gG~~~r~~~A~A~gL~e 286 (431)
T cd00617 220 -------------REMFSYADGCTMSAKKDGLVNIGGFLALRDDELYEEARQRVVLYEGFVTYGGMAGRDMEALAQGLRE 286 (431)
T ss_pred -------------HHhhccCCEEEEEeecCCCCccceEEEeCcHHHHHHHHHhccccCCccccccccHHHHHHHHHHHHh
Confidence 3355666666656555 4699998776666555321 1222333333444445544
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceecCCceEEEEEecCccccC---CChhhHHHHHHHHHHhcCeEEeC-C
Q 044773 139 KKFAQNYISENKKRLKQRHRKLVSGLEKAGISCLKSNAGLFCWVDMRHLLSS---NTFEAEMELWKKIVYDVKLNISP-G 214 (289)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~g~~~~i~~~~~~~~---~~~~~~~~~~~~ll~~~gi~v~p-g 214 (289)
... . +...+.++ +++++.+.|.+.|+.+..|.||+++|++++...+. .. .+..+++..|+++.||.+.. |
T Consensus 287 ~~~-~---~~l~~~~~-~r~~l~~~L~~~G~~v~~P~Ggh~v~~d~~~~~~~~~~~~-~~~~~la~~L~~e~gV~~~~~g 360 (431)
T cd00617 287 AVE-E---DYLRHRVE-QVRYLGDRLDEAGVPIVEPAGGHAVFIDAREFLPHIPQEQ-FPAQALAAELYLEAGVRAVELG 360 (431)
T ss_pred ccc-H---HHHHHHHH-HHHHHHHHHHHCCCCccCCCcceEEEEEhHHhcCCCCccc-CcHHHHHHHHHHHcCeeEEeec
Confidence 211 1 22333444 44889999999999999999999999998864221 11 24567998999999999653 4
Q ss_pred CC-CC--CC-------CCCeEEEEEec--CCHHHHHHHHHHHHHHHHHHHH
Q 044773 215 SS-CH--CT-------EPGWFRVCFAN--MSEDTLKLSMQRLKAFVDSITT 253 (289)
Q Consensus 215 ~~-f~--~~-------~~~~~Ris~~~--~~~e~l~~~l~~l~~~l~~~~~ 253 (289)
+. ++ +. .-..+|+++.. -+.++++.+.+++..+++....
T Consensus 361 ~~~~~~~~~~~~~~~~~~~~~rl~~prr~~t~~~~~~~~~~~~~~~~~~~~ 411 (431)
T cd00617 361 IFSAGRDPNTGENKYPELELVRLAIPRRVYTQDHMDYVAAAVIALYERRED 411 (431)
T ss_pred ceecccCCCCCcccCCccceeEEeccccccCHHHHHHHHHHHHHHHhhHhh
Confidence 41 12 11 12679999954 5899999999999999887654
No 154
>PRK10534 L-threonine aldolase; Provisional
Probab=99.81 E-value=1.8e-18 Score=154.40 Aligned_cols=198 Identities=17% Similarity=0.186 Sum_probs=129.7
Q ss_pred CccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEecC
Q 044773 11 KVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVYSL 90 (289)
Q Consensus 11 ~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~s~ 90 (289)
++++|+++||+ ||.+++.+++++|+++|+++++++++||+|..... .....+...+.. ..+++ +.||
T Consensus 129 ~~~lv~l~np~--~G~v~~~~~l~~i~~~~~~~~~~lvvDEA~~~~~~-~~~~~~~~~~~~--------~~~~~--~~s~ 195 (333)
T PRK10534 129 RTRLLSLENTH--NGKVLPREYLKQAWEFTRERNLALHVDGARIFNAV-VAYGCELKEITQ--------YCDSF--TICL 195 (333)
T ss_pred cceEEEEecCC--CCeecCHHHHHHHHHHHHHcCCeEEeeHHHHHHHH-HHcCCCHHHHHh--------cCCEE--EEEe
Confidence 57899999776 59999999999999999999999999999862111 000112222211 11322 3489
Q ss_pred ccccCCCCceEE-EEEecCHHHHHHHHhccccCC----CChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044773 91 SKDLGLPGFRVG-AIYSNDDTVVAAATKMSSFGL----VSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLE 165 (289)
Q Consensus 91 sK~~g~~G~r~G-~i~~~~~~~~~~~~~~~~~~~----~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 165 (289)
||.+|++ +| |+++ ++.+.+.+........ .+.+.+.+....+++ .. +..+..+++++++.+.|+
T Consensus 196 SK~~~~~---~G~~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~a~~~~~l~~------~~-~~~~~~~~~r~~l~~~L~ 264 (333)
T PRK10534 196 SKGLGTP---VGSLLVG-NRDYIKRARRWRKMTGGGMRQAGILAAAGLYALKH------NV-ARLQEDHDNAAWLAEQLR 264 (333)
T ss_pred EcCCCCc---ccceEEc-CHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHh------hH-HHHHHHHHHHHHHHHHHH
Confidence 9998754 68 5777 4555555554443221 122334444433432 11 222234446688999999
Q ss_pred hcCCceecCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEEe-cCCHHHHHHHHHHH
Q 044773 166 KAGISCLKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFA-NMSEDTLKLSMQRL 244 (289)
Q Consensus 166 ~~g~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ris~~-~~~~e~l~~~l~~l 244 (289)
++|+++.+++ ++|+|++++.. +..++. ++++++||.+.|+. ++|++.. .++++++++++++|
T Consensus 265 ~~g~~~~~~~-~nfv~~~~~~~-------~~~~~~-~~l~~~gi~v~~~~--------~~rl~~~~r~t~e~~~~~~~~l 327 (333)
T PRK10534 265 EAGADVMRQD-TNMLFVRVGEE-------QAAALG-EYMRERNVLINASP--------IVRLVTHLDVSREQLAEVVAHW 327 (333)
T ss_pred hCCCccCCCC-ceEEEEECCch-------hHHHHH-HHHHHcCeeecCCc--------eEEEEEEeCCCHHHHHHHHHHH
Confidence 9999888774 67999998731 113454 45568899998863 5799884 37999999999999
Q ss_pred HHHHH
Q 044773 245 KAFVD 249 (289)
Q Consensus 245 ~~~l~ 249 (289)
.+++.
T Consensus 328 ~~~~~ 332 (333)
T PRK10534 328 RAFLA 332 (333)
T ss_pred HHHhc
Confidence 87753
No 155
>PLN02955 8-amino-7-oxononanoate synthase
Probab=99.81 E-value=3.5e-18 Score=156.28 Aligned_cols=222 Identities=13% Similarity=0.071 Sum_probs=145.9
Q ss_pred hHHHhhhCCCccEEEEeCC-CCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCC
Q 044773 2 YQLAQKRHLKVKGVLVTNP-SNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEV 80 (289)
Q Consensus 2 l~~~~~~~~~~~~i~l~~p-~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 80 (289)
+++.++..++.+.++++.+ -++.|.+.+ +++|.++|++||+++|+||+|+...+ |.......+.++- .
T Consensus 239 Le~~L~~~~~~~~~Vv~EgV~SmdGdiap---L~eL~~L~~~~ga~LiVDEAH~~Gv~-G~~G~G~~e~~g~-------~ 307 (476)
T PLN02955 239 LNSLLSSCKMKRKVVVTDSLFSMDGDFAP---MEELSQLRKKYGFLLVIDDAHGTFVC-GENGGGVAEEFNC-------E 307 (476)
T ss_pred HHHHHHhCCCCceEEEEeCCCCCCCCcCC---HHHHHHHHHHcCcEEEEcccccCcee-cCCCCcHHHHhCC-------C
Confidence 4566665544344455555 789999999 99999999999999999999996655 4444454544331 3
Q ss_pred CCceEEEecCccccCCCCceEEEEEecCHHHHHHHHhc-cccCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHH
Q 044773 81 WNRVHIVYSLSKDLGLPGFRVGAIYSNDDTVVAAATKM-SSFGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRK 159 (289)
Q Consensus 81 ~~~~i~i~s~sK~~g~~G~r~G~i~~~~~~~~~~~~~~-~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 159 (289)
.+.+++++||||++|+.| ||+++++ .+++.++.. ..+...+++....++..+..... .......++.++++.++
T Consensus 308 ~di~ii~~TLsKA~G~~G---Gfi~gs~-~~~~~l~~~~~~~ifStalpp~~aaa~laal~l-~~~~~~~r~~L~~n~~~ 382 (476)
T PLN02955 308 ADVDLCVGTLSKAAGCHG---GFIACSK-KWKQLIQSRGRSFIFSTAIPVPMAAAAYAAVVV-ARKEKWRRKAIWERVKE 382 (476)
T ss_pred CCCcEEEEeCccchhccC---ceeecHH-HHHHHHHHhCCCCeecccccHHHHHHHHHHHHH-HhcCHHHHHHHHHHHHH
Confidence 477899999999999888 9999965 455665543 23322222222223233332222 11123467788888888
Q ss_pred HHHHHHhcCCceecCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCC-CCCCeEEEEEe-cCCHHHH
Q 044773 160 LVSGLEKAGISCLKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHC-TEPGWFRVCFA-NMSEDTL 237 (289)
Q Consensus 160 l~~~l~~~g~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~-~~~~~~Ris~~-~~~~e~l 237 (289)
+++. .|+.+ . +.++.+.+..+.. ..++...|+ +.||.+.+..+... .+...+||++. .++++|+
T Consensus 383 fr~~---~G~~~---~-sPI~pI~ig~~~~------a~~~~~~L~-~~Gi~v~~i~yPtVP~g~~rLRi~lsA~Ht~edI 448 (476)
T PLN02955 383 FKAL---SGVDI---S-SPIISLVVGNQEK------ALKASRYLL-KSGFHVMAIRPPTVPPNSCRLRVTLSAAHTTEDV 448 (476)
T ss_pred HHHh---cCCCC---C-CCEEEEEeCCHHH------HHHHHHHHH-HCCCEEEEECCCCCCCCCceEEEeeCCCCCHHHH
Confidence 8874 36653 2 3344455554322 255777777 66999987665543 33468999994 4899999
Q ss_pred HHHHHHHHHHHHHHHH
Q 044773 238 KLSMQRLKAFVDSITT 253 (289)
Q Consensus 238 ~~~l~~l~~~l~~~~~ 253 (289)
+.+++.|.++.+....
T Consensus 449 d~lv~~L~~~~~~~~~ 464 (476)
T PLN02955 449 KKLITALSSCLDFDNT 464 (476)
T ss_pred HHHHHHHHHHHhhhcc
Confidence 9999999988766554
No 156
>PRK00854 rocD ornithine--oxo-acid transaminase; Reviewed
Probab=99.81 E-value=3.2e-18 Score=156.65 Aligned_cols=208 Identities=13% Similarity=0.093 Sum_probs=139.6
Q ss_pred CCccEEEEeCCCCCCccCCCH-HHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEe
Q 044773 10 LKVKGVLVTNPSNPLGTTMSR-NELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVY 88 (289)
Q Consensus 10 ~~~~~i~l~~p~NPtG~~~~~-~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~ 88 (289)
+++++|++++|+||+|.++++ +++++|.++|+++|+++|+||+|.++++.+..+. .+... -..+.+
T Consensus 186 ~~~~aii~e~~~~~~G~~~~~~~~l~~l~~l~~~~gi~lI~DEv~~g~g~~g~~~~--~~~~g-------~~~D~~---- 252 (401)
T PRK00854 186 PNTVAFLVEPIQGEAGVIIPPAGYFTRVRELCTANNVTLILDEIQTGLGRTGKLLA--EEHEG-------IEADVT---- 252 (401)
T ss_pred CCeEEEEEccccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhCCCCCchHhH--HhhcC-------CCCCEE----
Confidence 478999999999999999974 4699999999999999999999987655443211 11111 012322
Q ss_pred cCccccCCCCceEEEEEecCHHHHHHHHhcc--ccCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 044773 89 SLSKDLGLPGFRVGAIYSNDDTVVAAATKMS--SFGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEK 166 (289)
Q Consensus 89 s~sK~~g~~G~r~G~i~~~~~~~~~~~~~~~--~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 166 (289)
.++|.++...+|+||++++++ +.+.+.... ..+..+++.+.++.+.|+.. ++ ....+.++++.+++.+.|++
T Consensus 253 ~~~K~l~gg~~~ig~v~~~~~-~~~~l~~~~~~~t~~~~~~~~aa~~a~L~~l---~~--~~~~~~~~~~~~~l~~~L~~ 326 (401)
T PRK00854 253 LIGKALSGGFYPVSAVLSNSE-VLGVLKPGQHGSTFGGNPLACAVARAALKVL---TE--EGMIENAAEMGAYFLEGLRS 326 (401)
T ss_pred EecccccCCccCeEEEEEcHH-HHhcccCCCCCCCCCcCHHHHHHHHHHHHHH---HH--cCHHHHHHHHHHHHHHHHHh
Confidence 247999733379999999654 444443221 22336778888888877642 21 23567788888889999988
Q ss_pred cCCce---ecCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEEe-cCCHHHHHHHHH
Q 044773 167 AGISC---LKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFA-NMSEDTLKLSMQ 242 (289)
Q Consensus 167 ~g~~~---~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ris~~-~~~~e~l~~~l~ 242 (289)
++... ..+.+.++. +.+... . ....+++..|+ ++||.+.+. +.+++|+++. .+++++++++++
T Consensus 327 ~~~~~~~~~~g~g~~~~-i~~~~~--~---~~~~~~~~~L~-~~GV~v~~~------~~~~lR~~p~~~~t~e~i~~~i~ 393 (401)
T PRK00854 327 IRSNIVREVRGRGLMLA-VELEPE--A---GGARQYCEALK-ERGLLAKDT------HDHTIRLAPPLVITREQVDWALE 393 (401)
T ss_pred hccCceEEEeccceEEE-EEEecC--c---hhHHHHHHHHH-HCCeEEecC------CCCEEEEeCCcccCHHHHHHHHH
Confidence 64321 234454444 433221 1 12246788877 469999753 2368999984 369999999999
Q ss_pred HHHHHHH
Q 044773 243 RLKAFVD 249 (289)
Q Consensus 243 ~l~~~l~ 249 (289)
+|++++.
T Consensus 394 ~l~~~l~ 400 (401)
T PRK00854 394 QIAKVLA 400 (401)
T ss_pred HHHHHhh
Confidence 9988763
No 157
>TIGR01979 sufS cysteine desulfurases, SufS subfamily. This model represents a subfamily of NifS-related cysteine desulfurases involved in FeS cluster formation needed for nitrogen fixation among other vital functions. Many cysteine desulfurases are also active as selenocysteine lyase and/or cysteine sulfinate desulfinase. This subfamily is associated with the six-gene SUF system described in E. coli and Erwinia as an FeS cluster formation system during oxidative stress. The active site Cys is this subfamily resembles GHHC with one or both His conserved.
Probab=99.80 E-value=5.4e-18 Score=155.25 Aligned_cols=208 Identities=16% Similarity=0.201 Sum_probs=141.7
Q ss_pred CCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEec
Q 044773 10 LKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVYS 89 (289)
Q Consensus 10 ~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~s 89 (289)
++++++++++|+||||.+++ +++|.++|+++|+++++|++|+.. ....++. ..+.++++.|
T Consensus 158 ~~~~lv~~~~~~~~tG~~~~---~~~i~~~~~~~~~~~ivD~a~~~g----~~~~~~~------------~~~~d~~~~s 218 (403)
T TIGR01979 158 EKTKLVAITHVSNVLGTVNP---VEEIAKLAHQVGAKVLVDGAQAVP----HMPVDVQ------------ALDCDFYVFS 218 (403)
T ss_pred cCCeEEEEEcccccccccCC---HHHHHHHHHHcCCEEEEEchhhcC----ccccCcc------------ccCCCEEEEe
Confidence 57899999999999999999 889999999999999999999742 2222222 2256689999
Q ss_pred CccccCCCCceEEEEEecCHHHHHHHHhcc---------------------c--cCCCChHHHHHHHHHhCCchHHHH-H
Q 044773 90 LSKDLGLPGFRVGAIYSNDDTVVAAATKMS---------------------S--FGLVSSQTQYLLSALLSDKKFAQN-Y 145 (289)
Q Consensus 90 ~sK~~g~~G~r~G~i~~~~~~~~~~~~~~~---------------------~--~~~~~~~~q~~~~~~l~~~~~~~~-~ 145 (289)
++|.+|.+| +|+++++++. .+.+.... . .++.+.....++..+++.. .+ -
T Consensus 219 ~~K~~gp~G--~g~l~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~~---~~~g 292 (403)
T TIGR01979 219 GHKMYGPTG--IGVLYGKEEL-LEQMPPFLGGGEMIAEVSFEETTYNEAPHKFEAGTPNIAGVIGLGAAIDYL---EAIG 292 (403)
T ss_pred cccccCCCC--ceEEEEchHH-HhcCCCeecCCCceeecccCccccCCChhhcCCCCccHHHHHHHHHHHHHH---HHhC
Confidence 999888556 8999986543 33221000 0 0123334445555555321 22 2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhc-CCceecCC-----ceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCC
Q 044773 146 ISENKKRLKQRHRKLVSGLEKA-GISCLKSN-----AGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHC 219 (289)
Q Consensus 146 ~~~~~~~~~~~~~~l~~~l~~~-g~~~~~~~-----~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~ 219 (289)
.++..++..+.++++.+.|+++ |+++..+. ++++. +.++.. . ..++.+ .++++||.+.+|..+..
T Consensus 293 ~~~~~~~~~~l~~~l~~~l~~~~g~~~~~~~~~~~~~~~v~-~~~~~~-~------~~~~~~-~L~~~gI~v~~g~~~~~ 363 (403)
T TIGR01979 293 LENIEAHEHELTAYALERLGEIPGLRIYGPRDAEDRGGIIS-FNVEGV-H------PHDVGT-ILDEEGIAVRSGHHCAQ 363 (403)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCccccCceEE-EEeCCc-C------HHHHHH-HHhhCCEEEcchhhhhH
Confidence 4566788888889999999887 78877654 44444 555431 1 134554 45688999998764321
Q ss_pred ------CCCCeEEEEEec-CCHHHHHHHHHHHHHHHHHH
Q 044773 220 ------TEPGWFRVCFAN-MSEDTLKLSMQRLKAFVDSI 251 (289)
Q Consensus 220 ------~~~~~~Ris~~~-~~~e~l~~~l~~l~~~l~~~ 251 (289)
..++++|||++. ++++|++.+++.|+++++.+
T Consensus 364 ~~~~~~~~~~~iRiS~~~~~t~~di~~l~~~l~~~~~~~ 402 (403)
T TIGR01979 364 PLMRRFGVPATCRASFYIYNTEEDIDALVEALKKVRKFF 402 (403)
T ss_pred HHHHHhCCCCEEEEEeccCCCHHHHHHHHHHHHHHHHHh
Confidence 125789999974 79999999999999877653
No 158
>PLN02242 methionine gamma-lyase
Probab=99.80 E-value=5.1e-18 Score=155.45 Aligned_cols=137 Identities=17% Similarity=0.164 Sum_probs=100.0
Q ss_pred CccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEecC
Q 044773 11 KVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVYSL 90 (289)
Q Consensus 11 ~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~s~ 90 (289)
++|+|++++|+||||.+.+ +++|+++|++++++||+|++|..+.+ +...+ +.+++++||
T Consensus 163 ~tklV~lesp~NPtG~v~d---l~~I~~la~~~gi~livDea~~~~~~------~~~~~------------g~divv~S~ 221 (418)
T PLN02242 163 KTKVLYFESISNPTLTVAD---IPELARIAHEKGVTVVVDNTFAPMVL------SPARL------------GADVVVHSI 221 (418)
T ss_pred CCEEEEEecCCCCCCcccC---HHHHHHHHHHhCCEEEEECCCCccCC------CHHHc------------CCcEEEEeC
Confidence 5899999999999999987 99999999999999999999975432 11111 356889999
Q ss_pred ccccCCCCce-EEEEEecCHHHHHHHHhccc----cCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044773 91 SKDLGLPGFR-VGAIYSNDDTVVAAATKMSS----FGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLE 165 (289)
Q Consensus 91 sK~~g~~G~r-~G~i~~~~~~~~~~~~~~~~----~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 165 (289)
||.++.+|.+ .||++++++ +.+.+..... ..+.+...|.+...+..... +..+.+.+.++++.+.+.|+
T Consensus 222 SK~l~g~g~~~gG~iv~~~~-li~~l~~~~~~~~~~~g~~~~~~~A~l~~~~l~t-----l~~r~~~~~~~a~~la~~L~ 295 (418)
T PLN02242 222 SKFISGGADIIAGAVCGPAE-LVNSMMDLHHGALMLLGPTMNPKVAFELSERLPH-----LSLRMKEHCRRAMEYAKRMK 295 (418)
T ss_pred ccccCCCCCceEEEEEcCHH-HHHHHHHHhhhhhhccCCCCCHHHHHHHHcCCCc-----HHHHHHHHHHHHHHHHHHHH
Confidence 9999878877 599998654 4444443321 23234455666555554432 34566788999999999999
Q ss_pred hcCCceecC
Q 044773 166 KAGISCLKS 174 (289)
Q Consensus 166 ~~g~~~~~~ 174 (289)
++++++..|
T Consensus 296 ~~~~~V~yP 304 (418)
T PLN02242 296 ELGLKVIYP 304 (418)
T ss_pred hCCCEEECC
Confidence 987766544
No 159
>TIGR00700 GABAtrnsam 4-aminobutyrate aminotransferase, prokaryotic type. Alternate names include GABA transaminase, gamma-amino-N-butyrate transaminase, and beta-alanine--oxoglutarate aminotransferase.
Probab=99.80 E-value=1.2e-17 Score=153.73 Aligned_cols=213 Identities=13% Similarity=0.114 Sum_probs=135.9
Q ss_pred CccEEEEeCC-CCCCccCC-CHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEe
Q 044773 11 KVKGVLVTNP-SNPLGTTM-SRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVY 88 (289)
Q Consensus 11 ~~~~i~l~~p-~NPtG~~~-~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~ 88 (289)
++-+ ++..| +.-+|..+ +.+.+++|.++|++|++++|+||+|.++.+++.. .++. ..+....+.
T Consensus 197 ~iAa-vi~Epi~g~~G~~~~~~~~l~~l~~lc~~~gillI~DEV~tg~gr~g~~-~a~~------------~~~~~pDi~ 262 (420)
T TIGR00700 197 NVAA-LVIEPVQGEGGFIVPAKGFVPALLDWCREHGIVFIADEVQTGFARTGAM-FACE------------HEGPEPDLI 262 (420)
T ss_pred cEEE-EEECCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEEecccCCcccchh-HHHh------------hcCCCCCEE
Confidence 4555 45556 66678766 5556999999999999999999999998666542 1111 112334466
Q ss_pred cCccccCCCCceEEEEEecCHHHHHHHHh--ccccCCCChHHHHHHHHHhC---CchHHHHHHHHHHHHHHHHHHHHHHH
Q 044773 89 SLSKDLGLPGFRVGAIYSNDDTVVAAATK--MSSFGLVSSQTQYLLSALLS---DKKFAQNYISENKKRLKQRHRKLVSG 163 (289)
Q Consensus 89 s~sK~~g~~G~r~G~i~~~~~~~~~~~~~--~~~~~~~~~~~q~~~~~~l~---~~~~~~~~~~~~~~~~~~~~~~l~~~ 163 (289)
+|||.++ +|+|+||+++++ .+.+.+.. ....+..|++.+.++.+.++ +..+ .+..++..+.++++.+.+.+
T Consensus 263 ~lsK~l~-~G~pig~v~~~~-~i~~~~~~~~~~~T~~~~pl~~aaa~a~l~~l~~~~~-~~~~~~~g~~l~~~L~~l~~- 338 (420)
T TIGR00700 263 TTAKSLA-DGLPLSGVTGRA-EIMDAPAPGGLGGTYAGNPLACAAALAVLAIIESEGL-IERARQIGRLVTDRLTTLKA- 338 (420)
T ss_pred Eeecccc-CCcceEEEEecH-HHHhhcCCCCcCCCCCcCHHHHHHHHHHHHHHHhccH-HHHHHHHHHHHHHHHHHHHh-
Confidence 7999999 999999999964 44444431 22334478888888866554 3333 44444444444444333332
Q ss_pred HHhcC-CceecCCceEEEEEecCccccC-CChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEEec-CCHHHHHHH
Q 044773 164 LEKAG-ISCLKSNAGLFCWVDMRHLLSS-NTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFAN-MSEDTLKLS 240 (289)
Q Consensus 164 l~~~g-~~~~~~~~g~~~~i~~~~~~~~-~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ris~~~-~~~e~l~~~ 240 (289)
+++ +....+. |.+.|+.+.+.... +.......+...+. ++||.+.|+..|+ +++||+++. +++++++++
T Consensus 339 --~~~~~~~vrg~-G~~~~i~~~~~~~~~~~~~~~~~l~~~~~-~~Gv~i~p~~~f~----~~lRl~p~l~~~~~~l~~~ 410 (420)
T TIGR00700 339 --VDPRIGDVRGL-GAMIAVELVDPGTTEPDAGLAERIATAAH-AAGLLLLTCGMFG----NIIRFLPPLTIGDELLSEG 410 (420)
T ss_pred --hCCCEEEeecc-ceEEEEEEecCCCCCccHHHHHHHHHHHH-HCCeEEeccCCCC----CEEEEECCCCcCHHHHHHH
Confidence 232 3334444 56777876432110 11111233444444 7799999987774 589999864 689999999
Q ss_pred HHHHHHHHH
Q 044773 241 MQRLKAFVD 249 (289)
Q Consensus 241 l~~l~~~l~ 249 (289)
+++|.+++.
T Consensus 411 ~~~l~~~l~ 419 (420)
T TIGR00700 411 LDILCAILA 419 (420)
T ss_pred HHHHHHHhh
Confidence 999998874
No 160
>PRK09792 4-aminobutyrate transaminase; Provisional
Probab=99.80 E-value=1.5e-17 Score=152.87 Aligned_cols=218 Identities=11% Similarity=0.132 Sum_probs=138.4
Q ss_pred CCccEEEEeCCCCCCccCC-CHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEe
Q 044773 10 LKVKGVLVTNPSNPLGTTM-SRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVY 88 (289)
Q Consensus 10 ~~~~~i~l~~p~NPtG~~~-~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~ 88 (289)
.++.+|++...++|+|..+ +.+.+++|.++|+++++++|+||++.++.++|.. .....+ + +..+ +.
T Consensus 197 ~~iaavi~EPvq~~~G~~~~~~~~l~~l~~lc~~~g~llI~DEv~tg~gr~G~~-~a~~~~-~-------~~pD----i~ 263 (421)
T PRK09792 197 KQVAAIIFEPVQGEGGFNVAPKELVAAIRRLCDEHGIVMIADEVQSGFARTGKL-FAMDHY-A-------DKPD----LM 263 (421)
T ss_pred CceEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCCCCch-hHHHhc-C-------CCCc----EE
Confidence 3566766554489999866 8999999999999999999999999998776653 222222 1 1222 68
Q ss_pred cCccccCCCCceEEEEEecCHHHHHHHHh--ccccCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 044773 89 SLSKDLGLPGFRVGAIYSNDDTVVAAATK--MSSFGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEK 166 (289)
Q Consensus 89 s~sK~~g~~G~r~G~i~~~~~~~~~~~~~--~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 166 (289)
+|||.++ +|+|+||+++++ .+.+.+.. ....+..|++.+.++.+.++-.+. .+.++..++.-++..+.+.+..++
T Consensus 264 t~gK~l~-~G~pigav~~~~-~i~~~~~~~~~~~T~~gnpl~~aaa~a~l~~l~~-~~~~~~~~~~g~~l~~~l~~l~~~ 340 (421)
T PRK09792 264 TMAKSLA-GGMPLSGVVGNA-NIMDAPAPGGLGGTYAGNPLAVAAAHAVLNIIDK-ESLCERANQLGQRLKNTLIDAKES 340 (421)
T ss_pred Eeehhhc-CCCceEEEEEcH-HHHhccCCCCcCCCCCCCHHHHHHHHHHHHHHHh-hhHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999998 999999999954 44444322 222334788888855555543221 222333332222222222222222
Q ss_pred cCCceecCCc-eEEEEEecCccccC-CChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEEec-CCHHHHHHHHHH
Q 044773 167 AGISCLKSNA-GLFCWVDMRHLLSS-NTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFAN-MSEDTLKLSMQR 243 (289)
Q Consensus 167 ~g~~~~~~~~-g~~~~i~~~~~~~~-~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ris~~~-~~~e~l~~~l~~ 243 (289)
++. +..+.| |+++|+.+.+.... ........+...++ ++||.+.+... ....+||.++. ++++++++++++
T Consensus 341 ~p~-v~~vrG~Gl~~~ie~~~~~~~~~~~~~~~~l~~~~~-~~Gv~i~~~g~----~~~~irl~P~l~i~~~ei~~~~~~ 414 (421)
T PRK09792 341 VPA-IAAVRGLGSMIAAEFNDPQTGEPSAAIAQKIQQRAL-AQGLLLLTCGA----YGNVIRFLYPLTIPDAQFDAAMKI 414 (421)
T ss_pred CCC-cceecccceEEEEEecCCccCCcchHHHHHHHHHHH-HCCcEEeecCC----CCCEEEEeCCCcCCHHHHHHHHHH
Confidence 343 334555 89999998753111 11122345666666 67999864322 24689999876 799999999999
Q ss_pred HHHHHH
Q 044773 244 LKAFVD 249 (289)
Q Consensus 244 l~~~l~ 249 (289)
+.+++.
T Consensus 415 l~~~l~ 420 (421)
T PRK09792 415 LQDALS 420 (421)
T ss_pred HHHHHh
Confidence 998874
No 161
>PRK07049 methionine gamma-lyase; Validated
Probab=99.80 E-value=1.8e-17 Score=152.26 Aligned_cols=133 Identities=18% Similarity=0.285 Sum_probs=97.8
Q ss_pred CCccEEEEeCCCCCCccCCCHHHHHHHHHHHHH---cCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEE
Q 044773 10 LKVKGVLVTNPSNPLGTTMSRNELNLLVNFITE---KNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHI 86 (289)
Q Consensus 10 ~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~---~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~ 86 (289)
+++|+|++++|+||||.+++.+++.+|++.|++ +++++|+||+|....+. . ++ ..+.+++
T Consensus 173 ~~tklv~lesP~NPtg~v~d~~~l~~la~~~~~~~~~~~~vvvDety~~~~~~--~--pl-------------~~g~div 235 (427)
T PRK07049 173 GRVSLILIETPANPTNSLVDVAAVRRVADAIEARQGHRPIIACDNTLLGPVFQ--K--PL-------------EHGADLS 235 (427)
T ss_pred CCceEEEEECCCCCCCcccCHHHHHHHHHHhhhcccCCCEEEEECCccccccC--C--cc-------------ccCCCEE
Confidence 478999999999999999998888888887654 68999999998753221 1 11 1134688
Q ss_pred EecCccccC-CCCceEEEEEecCHHHHHHHHhcccc--CCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHH
Q 044773 87 VYSLSKDLG-LPGFRVGAIYSNDDTVVAAATKMSSF--GLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSG 163 (289)
Q Consensus 87 i~s~sK~~g-~~G~r~G~i~~~~~~~~~~~~~~~~~--~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~ 163 (289)
+.|+||++| ++|+|+||+++++ .+.+.+...... ...+++.+.++...++. +..+.++..++++.+.+.
T Consensus 236 v~S~SK~~gG~~glr~G~vv~~~-~l~~~l~~~~~~~g~~ls~~~a~l~~r~L~t-------l~~R~~~~~~~a~~la~~ 307 (427)
T PRK07049 236 VYSLTKYVGGHSDLVAGAVLGRK-ALIRQVRALRSAIGTQLDPHSCWMLGRSLET-------LVLRMERANRNARAVAEF 307 (427)
T ss_pred EEcCceeecCCCCcEEEEEECCH-HHHHHHHHHHHhcCCCCCHHHHHHHHcCCCh-------HHHHHHHHHHHHHHHHHH
Confidence 899999998 6899999999864 454544444332 23667777777776653 344445558888999999
Q ss_pred HHhc
Q 044773 164 LEKA 167 (289)
Q Consensus 164 l~~~ 167 (289)
|+++
T Consensus 308 L~~~ 311 (427)
T PRK07049 308 LRDH 311 (427)
T ss_pred HHhC
Confidence 9987
No 162
>PRK09295 bifunctional cysteine desulfurase/selenocysteine lyase; Validated
Probab=99.80 E-value=8.5e-18 Score=154.13 Aligned_cols=207 Identities=14% Similarity=0.161 Sum_probs=141.7
Q ss_pred CCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEec
Q 044773 10 LKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVYS 89 (289)
Q Consensus 10 ~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~s 89 (289)
+++++|++++|+||||.+++ +++|.++|+++|+++++|++|+. +....++.+ .+.++++.|
T Consensus 163 ~~t~lv~l~~~~n~tG~~~~---~~~i~~~~~~~~~~vivD~a~~~----g~~~~~~~~------------~~~D~~~~s 223 (406)
T PRK09295 163 ERTRLLAITHVSNVLGTENP---LAEMIALAHQHGAKVLVDGAQAV----MHHPVDVQA------------LDCDFYVFS 223 (406)
T ss_pred CCcEEEEEecchhcccccCC---HHHHHHHHHHcCCEEEEEccccc----CccccCchh------------cCCCEEEee
Confidence 47899999999999999999 88899999999999999999974 222233322 245688999
Q ss_pred CccccCCCCceEEEEEecCHHHHHHHHhc----------------------c--ccCCCChHHHHHHHHHhCCchHHHHH
Q 044773 90 LSKDLGLPGFRVGAIYSNDDTVVAAATKM----------------------S--SFGLVSSQTQYLLSALLSDKKFAQNY 145 (289)
Q Consensus 90 ~sK~~g~~G~r~G~i~~~~~~~~~~~~~~----------------------~--~~~~~~~~~q~~~~~~l~~~~~~~~~ 145 (289)
++|.+|.+| +||++++++.+. .+... . ..++.+.....++..+++... +.-
T Consensus 224 ~~K~~gp~G--~G~l~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~r~e~GT~~~~~~~~l~~al~~~~--~~g 298 (406)
T PRK09295 224 GHKLYGPTG--IGILYVKEALLQ-EMPPWEGGGSMIATVSLTEGTTWAKAPWRFEAGTPNTGGIIGLGAALDYVS--ALG 298 (406)
T ss_pred hhhccCCCC--cEEEEEchHhHh-hCCCcccCCceeeeeecCCccccCCchhhcCCCCccHHHHHHHHHHHHHHH--HhC
Confidence 999888556 899999655432 22100 0 012234455555555554321 112
Q ss_pred HHHHHHHHHHHHHHHHHHHHhc-CCceecCC--ceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCC--
Q 044773 146 ISENKKRLKQRHRKLVSGLEKA-GISCLKSN--AGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCT-- 220 (289)
Q Consensus 146 ~~~~~~~~~~~~~~l~~~l~~~-g~~~~~~~--~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~-- 220 (289)
.++..++.++..+++.+.|.+. ++++..+. .+++ .+.++.. . ..++... ++++||.+..|..|...
T Consensus 299 ~~~i~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~iv-~~~~~~~-~------~~~~~~~-L~~~gI~v~~g~~c~~~~~ 369 (406)
T PRK09295 299 LNNIAEYEQNLMHYALSQLESVPDLTLYGPQNRLGVI-AFNLGKH-H------AYDVGSF-LDNYGIAVRTGHHCAMPLM 369 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCCceEE-EEEECCc-C------HHHHHHH-HHhCCeEEeccccchHHHH
Confidence 4566778888889999999877 67776553 4433 3445431 1 1235454 56889999998866421
Q ss_pred ----CCCeEEEEEec-CCHHHHHHHHHHHHHHHH
Q 044773 221 ----EPGWFRVCFAN-MSEDTLKLSMQRLKAFVD 249 (289)
Q Consensus 221 ----~~~~~Ris~~~-~~~e~l~~~l~~l~~~l~ 249 (289)
.++.+|+|+.. ++++|++.+++.|+++.+
T Consensus 370 ~~~~~~~~iRiS~~~ynt~~did~l~~~l~~i~~ 403 (406)
T PRK09295 370 AYYNVPAMCRASLAMYNTHEEVDRLVAGLQRIHR 403 (406)
T ss_pred HHHCCCCEEEEEccCCCCHHHHHHHHHHHHHHHH
Confidence 24689999975 799999999999988643
No 163
>PRK08247 cystathionine gamma-synthase; Reviewed
Probab=99.80 E-value=2.9e-18 Score=154.99 Aligned_cols=210 Identities=13% Similarity=0.220 Sum_probs=139.0
Q ss_pred CCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEec
Q 044773 10 LKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVYS 89 (289)
Q Consensus 10 ~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~s 89 (289)
+++++|++++|+||+|. ..++++|+++|+++|+++|+|++|....+ .. ++ ..+.+++++|
T Consensus 135 ~~tklv~le~P~NP~~~---~~dl~~I~~la~~~g~~lIvD~t~~~~~~-~~---p~-------------~~g~di~i~S 194 (366)
T PRK08247 135 PNTKAIFIETPTNPLMQ---ETDIAAIAKIAKKHGLLLIVDNTFYTPVL-QR---PL-------------EEGADIVIHS 194 (366)
T ss_pred cCceEEEEECCCCCCCc---HHHHHHHHHHHHHcCCEEEEECCCccccc-cC---ch-------------hcCCcEEEee
Confidence 47899999999999754 56699999999999999999999953211 11 11 1245699999
Q ss_pred CccccCC-CCceEEEEEecCHHHHHHHHhcccc--CCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 044773 90 LSKDLGL-PGFRVGAIYSNDDTVVAAATKMSSF--GLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEK 166 (289)
Q Consensus 90 ~sK~~g~-~G~r~G~i~~~~~~~~~~~~~~~~~--~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 166 (289)
+||.++. ++++.|+++++++.+.+.+...... ...++..+..+...++. +..+.+..+++++.+.+.|++
T Consensus 195 ~sK~~~g~~d~~~G~iv~~~~~l~~~~~~~~~~~g~~~s~~~a~l~~~~l~t-------l~~r~~~~~~~a~~l~~~L~~ 267 (366)
T PRK08247 195 ATKYLGGHNDVLAGLVVAKGQELCERLAYYQNAAGAVLSPFDSWLLIRGMKT-------LALRMRQHEENAKAIAAFLNE 267 (366)
T ss_pred cceeccCCCceeeeEEecChHHHHHHHHHHHHhcCCCCChHHHHHHHhccCc-------HHHHHHHHHHHHHHHHHHHHh
Confidence 9999963 3579999999756665554433222 22556666666665553 234445568999999999998
Q ss_pred c-CCc-e-ecCCceEEEEEecCccccCCChhhH---HHHHHHHHHhcCeEEeCCCCCCC-----------CCCCeEEEEE
Q 044773 167 A-GIS-C-LKSNAGLFCWVDMRHLLSSNTFEAE---MELWKKIVYDVKLNISPGSSCHC-----------TEPGWFRVCF 229 (289)
Q Consensus 167 ~-g~~-~-~~~~~g~~~~i~~~~~~~~~~~~~~---~~~~~~ll~~~gi~v~pg~~f~~-----------~~~~~~Ris~ 229 (289)
+ ++. + .++.||++.| .+........+.+. ..++..|.....+.+.|+..+.. .+++.+|||+
T Consensus 268 ~p~v~~v~~P~~gg~~sf-~~~~~~~~~~~~~~l~~~~~~~slg~~~sl~~~p~~~~~~~~~~~~r~~~gi~~~~~R~sv 346 (366)
T PRK08247 268 QPGVTDVLYPGRGGMLSF-RLQDEEWVNPFLKSLKLITFAESLGGVESFITYPATQTHADIPEEIRIANGVCNRLLRFSV 346 (366)
T ss_pred CCCeeEEecCCcCcEEEE-EECCHHHHHHHHHcCCcceEccCCCCCceEEECCcccccccCCHHHHHhcCCCCCeEEEEe
Confidence 7 665 3 4448898887 55321000000010 11233333455677788865532 1246899999
Q ss_pred ecCCHHHHHHHHHHHHHHHHH
Q 044773 230 ANMSEDTLKLSMQRLKAFVDS 250 (289)
Q Consensus 230 ~~~~~e~l~~~l~~l~~~l~~ 250 (289)
+. |+.+.+++.|.++++.
T Consensus 347 Gl---E~~~dl~~dl~~al~~ 364 (366)
T PRK08247 347 GI---ENVEDLIADLKQAFKQ 364 (366)
T ss_pred cc---CCHHHHHHHHHHHHhh
Confidence 96 7778888888887764
No 164
>TIGR00713 hemL glutamate-1-semialdehyde-2,1-aminomutase. This enzyme, glutamate-1-semialdehyde-2,1-aminomutase (glutamate-1-semialdehyde aminotransferase, GSA aminotransferase), contains a pyridoxal phosphate attached at a Lys residue at position 283 of the seed alignment. It is in the family of class III aminotransferases.
Probab=99.79 E-value=6.9e-18 Score=155.52 Aligned_cols=223 Identities=17% Similarity=0.150 Sum_probs=143.0
Q ss_pred hHHHhhhC-CCccEEEEe-CCCCCCccCCC-HHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccC
Q 044773 2 YQLAQKRH-LKVKGVLVT-NPSNPLGTTMS-RNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENT 78 (289)
Q Consensus 2 l~~~~~~~-~~~~~i~l~-~p~NPtG~~~~-~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (289)
+++++..+ .++++|++. +|+| +|.+++ .+.+++|.++|+++++++|+||+|.++.+ +..+. .+....
T Consensus 185 l~~~i~~~~~~~aavi~ep~~~~-~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~r~-g~~~~--~~~~~~------ 254 (423)
T TIGR00713 185 LEEVFEEYGEEIAGVIVEPVAGN-MGVVPPKPEFLAGLRALTEEYGSLLIFDEVMTGFRV-ALGGA--QEYFGV------ 254 (423)
T ss_pred HHHHHHHcCCcEEEEEEeCCCCC-CCCcCCCHHHHHHHHHHHHHhCCEEEEEcccccccc-Ccchh--HHHhCC------
Confidence 34555433 357777775 6678 788887 68999999999999999999999998733 33221 122110
Q ss_pred CCCCceEEEecCccccCCCCceEEEEEecCHHHHHHHHh-----ccccCCCChHHHHHHHHHhCCchHHHHHHHHHHHHH
Q 044773 79 EVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDTVVAAATK-----MSSFGLVSSQTQYLLSALLSDKKFAQNYISENKKRL 153 (289)
Q Consensus 79 d~~~~~i~i~s~sK~~g~~G~r~G~i~~~~~~~~~~~~~-----~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~ 153 (289)
..+ +.+|||.++ +|+|+||+++++ .+.+.+.. ....+..+++.+.++.+.++...- ....+..++..
T Consensus 255 -~pD----i~t~sK~l~-~G~pig~v~~~~-~i~~~~~~~~~~~~~~T~~~~~~~~aaa~a~l~~~~~-~~~~~~~~~~~ 326 (423)
T TIGR00713 255 -EPD----LTTLGKIIG-GGLPVGAFGGRR-EIMERLAPEGPVYQAGTLSGNPLAMAAGLATLKLLDE-EGVYTELDELA 326 (423)
T ss_pred -Ccc----hhhhhhhhc-CCCceeeeeEHH-HHHHhhCcCCCeeeccCCCCCHHHHHHHHHHHHHHhc-ccHHHHHHHHH
Confidence 112 458999999 999999999964 45554432 112334788888887777763221 22455666667
Q ss_pred HHHHHHHHHHHHhcCCcee-cCCceEE-EEEecCcccc-----CCChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEE
Q 044773 154 KQRHRKLVSGLEKAGISCL-KSNAGLF-CWVDMRHLLS-----SNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFR 226 (289)
Q Consensus 154 ~~~~~~l~~~l~~~g~~~~-~~~~g~~-~~i~~~~~~~-----~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~R 226 (289)
+++++.+.+.++++++... .+.|+++ +++......+ .........++..++ ++||.+.++ .| +.+|
T Consensus 327 ~~~~~~l~~~~~~~~~~~~v~~~g~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~v~~~-~~-----~~~~ 399 (423)
T TIGR00713 327 KRLAEGLSEVLEDTGIPHTVNRVGSMFSLFFTEEEVTNYADAKKSDTELFAKFFHEML-DKGVFLPPS-QF-----EACF 399 (423)
T ss_pred HHHHHHHHHHHHhcCCCeEEEeeccEEEEEEecCCCCChhhhhcccHHHHHHHHHHHH-HCCeEEecC-Cc-----ccee
Confidence 7777778888877776543 2344433 3333221100 000011224666777 579998754 22 2478
Q ss_pred EEEecCCHHHHHHHHHHHHHHHHH
Q 044773 227 VCFANMSEDTLKLSMQRLKAFVDS 250 (289)
Q Consensus 227 is~~~~~~e~l~~~l~~l~~~l~~ 250 (289)
+++. ++++++++++++|.+++++
T Consensus 400 l~~~-~t~~~i~~~~~~l~~~l~~ 422 (423)
T TIGR00713 400 LSAA-HTEEDIENTIEAAEEVFAE 422 (423)
T ss_pred eECC-CCHHHHHHHHHHHHHHHhh
Confidence 9887 5999999999999988864
No 165
>PLN02624 ornithine-delta-aminotransferase
Probab=99.79 E-value=2e-17 Score=154.09 Aligned_cols=225 Identities=16% Similarity=0.123 Sum_probs=143.4
Q ss_pred hHHHhhhC-CCccEEEEeCCCCCCccCCCHH-HHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCC
Q 044773 2 YQLAQKRH-LKVKGVLVTNPSNPLGTTMSRN-ELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTE 79 (289)
Q Consensus 2 l~~~~~~~-~~~~~i~l~~p~NPtG~~~~~~-~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d 79 (289)
+++++... .++.+|++..++|++|.+++++ .+++|.++|++||+++|+||+|.+++++|..+. .++.
T Consensus 214 l~~~l~~~~~~iaaiiiEpv~~~~G~v~p~~~~L~~l~~lc~~~gillI~DEv~tG~GrtG~~~a--~~~~--------- 282 (474)
T PLN02624 214 LEKIFEEDGDRIAAFLFEPIQGEAGVVIPPDGYLKAVRELCSKHNVLMIADEIQTGLARTGKMLA--CDWE--------- 282 (474)
T ss_pred HHHHHHhCCCCEEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCcCcCcchhh--HHhc---------
Confidence 45556433 4677888888899999988776 599999999999999999999998766554221 1111
Q ss_pred CCCceEEEecCccccCCCCceEEEEEecCHHHHHHHHhcc--ccCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHH
Q 044773 80 VWNRVHIVYSLSKDLGLPGFRVGAIYSNDDTVVAAATKMS--SFGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRH 157 (289)
Q Consensus 80 ~~~~~i~i~s~sK~~g~~G~r~G~i~~~~~~~~~~~~~~~--~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 157 (289)
+....+.++||.+|.+++++|++++++ .+.+.+.... ..+..+++.+.++.+.|+... + ....+++.++.
T Consensus 283 --~i~pDiv~lsK~lggG~~pigav~~~~-~i~~~~~~~~~~~T~~g~pl~~aaa~aaLe~l~---~--~~l~~~~~~~~ 354 (474)
T PLN02624 283 --EVRPDVVILGKALGGGVIPVSAVLADK-DVMLCIKPGEHGSTFGGNPLASAVAMAALQVVQ---D--EKLAERSAKLG 354 (474)
T ss_pred --CCCCCEEEecccccCCCCcceeeeecH-HHHhHhccCCcCCCCCCCHHHHHHHHHHHHHHH---h--chHHHHHHHHH
Confidence 112225557999996669999999964 4444343222 222367888888877776321 1 11223333444
Q ss_pred HHHHHHHHhc----C--CceecCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEEe-
Q 044773 158 RKLVSGLEKA----G--ISCLKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFA- 230 (289)
Q Consensus 158 ~~l~~~l~~~----g--~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ris~~- 230 (289)
+++.+.|+++ . +....+.|. +..+.+...... .....+++..|. ++||.+.|+. .+++||++.
T Consensus 355 ~~l~~~L~~l~~~~~~~i~~vrg~G~-~~~i~l~~~~~~--~~~a~~~~~~L~-e~GV~v~p~~------~~~lR~~p~l 424 (474)
T PLN02624 355 QELRDQLQKIQKQFPKLIKEVRGRGL-LNAVVLNSPKLG--PVSAYDVCLKLK-ERGLLAKPTH------DTIIRLAPPL 424 (474)
T ss_pred HHHHHHHHHHHHhCCCceEEEEeeEE-EEEEEecCCCcC--hHHHHHHHHHHH-hCCeEEecCC------CCEEEEECCc
Confidence 4444444432 1 222334444 444445432100 122346777765 6799998852 468999983
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHHhh
Q 044773 231 NMSEDTLKLSMQRLKAFVDSITTTL 255 (289)
Q Consensus 231 ~~~~e~l~~~l~~l~~~l~~~~~~~ 255 (289)
.++++++++++++|.++++.....+
T Consensus 425 ~~t~e~id~~l~~L~~~l~~~~~~~ 449 (474)
T PLN02624 425 SISEDELQECSKALSDVLEHDLPKL 449 (474)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 3799999999999999988765544
No 166
>PRK06918 4-aminobutyrate aminotransferase; Reviewed
Probab=99.79 E-value=2.6e-17 Score=152.60 Aligned_cols=217 Identities=14% Similarity=0.165 Sum_probs=138.9
Q ss_pred ccEEEEeCCC-CCCccCC-CHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEec
Q 044773 12 VKGVLVTNPS-NPLGTTM-SRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVYS 89 (289)
Q Consensus 12 ~~~i~l~~p~-NPtG~~~-~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~s 89 (289)
.-+.++..|- .-.|.++ +.+.+++|.++|+++|+++|+||+|.++.+++.. .++..+ +....+.|
T Consensus 219 ~iAavi~EPi~g~gG~~~~~~~~l~~l~~l~~~~gillI~DEV~tg~gr~g~~-~a~~~~------------~v~pDi~t 285 (451)
T PRK06918 219 TIAAVVMEPVQGEGGFIVPSKKFVQEVRNICSEHGILFVADEIQTGFARTGKY-FAIEHF------------DVVPDLIT 285 (451)
T ss_pred ceEEEEECcccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCcCccCce-ehhHhc------------CCCCCEEe
Confidence 3444667784 3346644 5666999999999999999999999998776643 232222 11122668
Q ss_pred CccccCCCCceEEEEEecCHHHHHHHHhc--cccCCCChHHHHHHHHHhC---CchHHHHHHHHHHHHHHHHHHHHHHHH
Q 044773 90 LSKDLGLPGFRVGAIYSNDDTVVAAATKM--SSFGLVSSQTQYLLSALLS---DKKFAQNYISENKKRLKQRHRKLVSGL 164 (289)
Q Consensus 90 ~sK~~g~~G~r~G~i~~~~~~~~~~~~~~--~~~~~~~~~~q~~~~~~l~---~~~~~~~~~~~~~~~~~~~~~~l~~~l 164 (289)
|||.++ +|+|+||+++++ .+.+.+... ...+..+++.+.++.+.++ +..+ .+..++..+.+.++.+.+.+
T Consensus 286 ~sK~l~-~G~pig~v~~~~-~i~~~~~~~~~~~T~~g~~l~~aaa~a~l~~i~~~~~-~~~~~~~g~~l~~~l~~l~~-- 360 (451)
T PRK06918 286 VSKSLG-AGVPISGVIGRK-EIMDESAPGELGGTYAGSPLGCAAALAVLDIIEKENL-NDRAIELGKVVMNRFEEMKN-- 360 (451)
T ss_pred eehhhc-CCCccEEEEEcH-HHHhccCCCCcCcCCCcCHHHHHHHHHHHHHHHHCCH-HHHHHHHHHHHHHHHHHHHh--
Confidence 999999 999999999964 444444322 2234478888888555554 3333 44555555555554443333
Q ss_pred HhcC-CceecCCceEEEEEecCccc-cCCChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEEec-CCHHHHHHHH
Q 044773 165 EKAG-ISCLKSNAGLFCWVDMRHLL-SSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFAN-MSEDTLKLSM 241 (289)
Q Consensus 165 ~~~g-~~~~~~~~g~~~~i~~~~~~-~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ris~~~-~~~e~l~~~l 241 (289)
+++ +....+.|+++.|.-..+.. ..........+...++ ++||.+.|+..|+ +++||+++. ++++++++++
T Consensus 361 -~~~~~~~vrg~G~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~Gvlv~~~~~~~----~~lrl~p~l~~t~~~id~~l 434 (451)
T PRK06918 361 -KYNCIGDVRGLGAMCAFELVQDRKTKEPDKTLTANICKEAN-KRGLLLLSAGTYG----NVIRVLMPLVITDEQLEEGL 434 (451)
T ss_pred -hCCCceeeccceeEEEEEEccCCCcCCCcHHHHHHHHHHHH-HCCeEEeecCCCC----CEEEEECCCccCHHHHHHHH
Confidence 222 22344667777765432210 0111112234555554 6799999986664 589999965 7899999999
Q ss_pred HHHHHHHHHHH
Q 044773 242 QRLKAFVDSIT 252 (289)
Q Consensus 242 ~~l~~~l~~~~ 252 (289)
++|.+++++..
T Consensus 435 ~~l~~~l~~~~ 445 (451)
T PRK06918 435 TIIEESLQACY 445 (451)
T ss_pred HHHHHHHHHHH
Confidence 99999998753
No 167
>KOG1360 consensus 5-aminolevulinate synthase [Coenzyme transport and metabolism]
Probab=99.79 E-value=5e-18 Score=147.37 Aligned_cols=230 Identities=12% Similarity=0.072 Sum_probs=175.3
Q ss_pred hHHHhhhCC--CccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCC
Q 044773 2 YQLAQKRHL--KVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTE 79 (289)
Q Consensus 2 l~~~~~~~~--~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d 79 (289)
|++++...+ -+|+|-..+.+..+|.+.+ |++|++++++||++.++||+|.- ++.|+....+.+.-+ -
T Consensus 292 L~~lL~~~~~svPKivAFEtVhSM~Gavcp---leelcDvah~yGAiTFlDEVHAV-GlYG~rGaGvgerdG-------v 360 (570)
T KOG1360|consen 292 LEQLLQSSPKSVPKIVAFETVHSMDGAVCP---LEELCDVAHKYGAITFLDEVHAV-GLYGPRGAGVGERDG-------V 360 (570)
T ss_pred HHHHHHhCCCCCCceEEEeeeeccCCCcCC---HHHHHHHHHHhCceeeeehhhhh-ccccCCCCCccccCC-------c
Confidence 566666654 4889999999999999999 99999999999999999999984 454555555555522 2
Q ss_pred CCCceEEEecCccccCCCCceEEEEEecCHHHHHHHHhc-cccCCCChHHHHHHHHHhCCchHHH-HHHHHHHHHHHHHH
Q 044773 80 VWNRVHIVYSLSKDLGLPGFRVGAIYSNDDTVVAAATKM-SSFGLVSSQTQYLLSALLSDKKFAQ-NYISENKKRLKQRH 157 (289)
Q Consensus 80 ~~~~~i~i~s~sK~~g~~G~r~G~i~~~~~~~~~~~~~~-~~~~~~~~~~q~~~~~~l~~~~~~~-~~~~~~~~~~~~~~ 157 (289)
+...+++.|++.|+||+-| |||.+. ..+.+.++.+ .+|.+.+++...+++.+++..+++. ++.+.+|+..+++.
T Consensus 361 m~kvDiIsGTLgKafGcVG---GYIAat-~~LvDmiRSyAaGFIFTTSLPP~vl~GAleaVr~lk~~eg~~lR~~hqrnv 436 (570)
T KOG1360|consen 361 MHKVDIISGTLGKAFGCVG---GYIAAT-RKLVDMIRSYAAGFIFTTSLPPMVLAGALEAVRILKSEEGRVLRRQHQRNV 436 (570)
T ss_pred chhhhhcccchhhhccccc---ceehhh-hhHHHHHHHhcCceEEecCCChHHHHhHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 5677799999999999999 999995 4555555554 5565566667777777777665532 23567788889999
Q ss_pred HHHHHHHHhcCCceecCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCC-CCCCeEEEEEe-cCCHH
Q 044773 158 RKLVSGLEKAGISCLKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHC-TEPGWFRVCFA-NMSED 235 (289)
Q Consensus 158 ~~l~~~l~~~g~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~-~~~~~~Ris~~-~~~~e 235 (289)
+++++.|.+.|+.+.+..+. ++-+.+.+...+ .+.+..|+.++||+++.-.+... .+...+||++. .++++
T Consensus 437 ~~~kq~l~~~GiPVi~~pSH-IiPv~vgda~l~------~~~sd~Li~~h~iYvQaINyPTV~rG~E~LRiaPTP~HT~~ 509 (570)
T KOG1360|consen 437 KYVKQLLMELGIPVIPNPSH-IIPVRVGDAALA------KQASDILISKHNIYVQAINYPTVARGTERLRIAPTPHHTPQ 509 (570)
T ss_pred HHHHHHHHHcCCcccCCCcc-eeeeeccCHHHH------HHHHHHHHHhcCeEEEeccCCcccccceeeecCCCCCCCHH
Confidence 99999999999999988775 444666654332 46888899999999985433322 34567999984 37999
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 044773 236 TLKLSMQRLKAFVDSITT 253 (289)
Q Consensus 236 ~l~~~l~~l~~~l~~~~~ 253 (289)
-++.+++.+..++.+...
T Consensus 510 mm~~lv~~l~~vw~~v~l 527 (570)
T KOG1360|consen 510 MMNILVNALLDVWNEVGL 527 (570)
T ss_pred HHHHHHHHHHHHHHHcCC
Confidence 999999999999888754
No 168
>PLN02855 Bifunctional selenocysteine lyase/cysteine desulfurase
Probab=99.79 E-value=1.1e-17 Score=154.29 Aligned_cols=212 Identities=15% Similarity=0.156 Sum_probs=144.2
Q ss_pred CCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEec
Q 044773 10 LKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVYS 89 (289)
Q Consensus 10 ~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~s 89 (289)
+++++|++++|+||||.+++ +++|.++|+++|+++++|++|+. +....++.++ +.++++.|
T Consensus 172 ~~t~lv~i~~~~n~tG~~~~---~~~I~~l~~~~g~~vivD~a~~~----g~~~~~~~~~------------~~d~~~~s 232 (424)
T PLN02855 172 EKTKLVATHHVSNVLGSILP---VEDIVHWAHAVGAKVLVDACQSV----PHMPVDVQTL------------GADFLVAS 232 (424)
T ss_pred cCceEEEEeCccccccccCC---HHHHHHHHHHcCCEEEEEhhhhc----CCcCCCchhc------------CCCEEEee
Confidence 47899999999999999999 78899999999999999999963 2222232222 44688999
Q ss_pred CccccCCCCceEEEEEecCHHHHHHHHhc--------------------c---ccCCCChHHHHHHHHHhCCchHHHHHH
Q 044773 90 LSKDLGLPGFRVGAIYSNDDTVVAAATKM--------------------S---SFGLVSSQTQYLLSALLSDKKFAQNYI 146 (289)
Q Consensus 90 ~sK~~g~~G~r~G~i~~~~~~~~~~~~~~--------------------~---~~~~~~~~~q~~~~~~l~~~~~~~~~~ 146 (289)
++|.+|.+| +||++++++.+. .+... . ..++.+.....++..+++... +..+
T Consensus 233 ~~K~~gp~G--~G~l~~~~~~~~-~~~p~~~g~~~~~~~~~~~~~~~~~~~r~e~GT~~~~~~~~l~~al~~~~--~~g~ 307 (424)
T PLN02855 233 SHKMCGPTG--IGFLWGKSDLLE-SMPPFLGGGEMISDVFLDHSTYAPPPSRFEAGTPAIGEAIGLGAAIDYLS--EIGM 307 (424)
T ss_pred cccccCCCc--cEEEEEchhhhh-cCCCEecCCCceeeeecCccccCCChhhccCCChHHHHHHHHHHHHHHHH--HhCH
Confidence 999777445 899999655432 22211 0 011123344444555554221 2235
Q ss_pred HHHHHHHHHHHHHHHHHHHhc-CCceecCCc------eEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCC
Q 044773 147 SENKKRLKQRHRKLVSGLEKA-GISCLKSNA------GLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHC 219 (289)
Q Consensus 147 ~~~~~~~~~~~~~l~~~l~~~-g~~~~~~~~------g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~ 219 (289)
++.+++.++..+++.+.|.++ |+++..+.. +.++.+.++.. . ..++...|.+++||.+..|..|..
T Consensus 308 ~~i~~~~~~l~~~l~~~L~~~~g~~i~~~~~~~~~~r~~~v~~~~~~~-~------~~~v~~~L~~~~gI~v~~g~~c~~ 380 (424)
T PLN02855 308 DRIHEYEVELGTYLYEKLSSVPGVRIYGPKPSEGVGRAALCAFNVEGI-H------PTDLSTFLDQQHGVAIRSGHHCAQ 380 (424)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCEEEeCCCcccccCcccEEEEEECCc-C------HHHHHHHhcccCCEEEechhhhhH
Confidence 677788888899999999877 777764321 22444555531 1 135677776556999998876532
Q ss_pred ------CCCCeEEEEEec-CCHHHHHHHHHHHHHHHHHHH
Q 044773 220 ------TEPGWFRVCFAN-MSEDTLKLSMQRLKAFVDSIT 252 (289)
Q Consensus 220 ------~~~~~~Ris~~~-~~~e~l~~~l~~l~~~l~~~~ 252 (289)
..++++|+|+.. ++++|++.+++.|++++....
T Consensus 381 ~~~~~~g~~~~iRiS~~~ynt~~di~~l~~~l~~~~~~~~ 420 (424)
T PLN02855 381 PLHRYLGVNASARASLYFYNTKEEVDAFIHALKDTIAFFS 420 (424)
T ss_pred HHHHHhCCCCeEEEEeccCCCHHHHHHHHHHHHHHHHHHH
Confidence 114689999965 799999999999999887643
No 169
>TIGR03403 nifS_epsilon cysteine desulfurase, NifS family, epsilon proteobacteria type. Members of this family are the NifS-like cysteine desulfurase of the epsilon division of the Proteobacteria, similar to the NifS protein of nitrogen-fixing bacteria. Like NifS, and unlike IscS, this protein is found as part of a system of just two proteins, a cysteine desulfurase and a scaffold, for iron-sulfur cluster biosynthesis. This protein is called NifS by Olsen, et al. (PubMed:11123951), so we use this designation.
Probab=99.79 E-value=1e-17 Score=152.38 Aligned_cols=212 Identities=13% Similarity=0.172 Sum_probs=146.9
Q ss_pred CCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEec
Q 044773 10 LKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVYS 89 (289)
Q Consensus 10 ~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~s 89 (289)
++++++++++|+||||.+++ +++|.++|+++|+++++|+++.. +....++. ..+.++++.|
T Consensus 139 ~~t~lv~~~~~~n~tG~~~~---~~~I~~la~~~g~~~ivD~a~~~----g~~~~~~~------------~~~~D~~~~s 199 (382)
T TIGR03403 139 EKTALVSVMWANNETGMIFP---IKEIGEICKERGVLFHTDAVQAI----GKIPVDVQ------------KAGVDFLSFS 199 (382)
T ss_pred cCCeEEEEEcccCCCccccC---HHHHHHHHHHcCCEEEEechhhc----CCCccCcc------------ccCCCEEEEc
Confidence 46899999999999999999 78899999999999999999873 22222222 2245588899
Q ss_pred CccccCCCCceEEEEEecCHHH-HHHHH-----hccccCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHH
Q 044773 90 LSKDLGLPGFRVGAIYSNDDTV-VAAAT-----KMSSFGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSG 163 (289)
Q Consensus 90 ~sK~~g~~G~r~G~i~~~~~~~-~~~~~-----~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~ 163 (289)
++|.+|.+| +|++++++... ...+. .....++.+.+.+.++..+++.. .+.++...+++++.++++.+.
T Consensus 200 ~~K~~gp~G--~g~l~vr~~~~~~p~~~g~~~~~~~~~gt~~~~~~~al~~al~~~---~~~~~~~~~~~~~l~~~l~~~ 274 (382)
T TIGR03403 200 AHKFHGPKG--VGGLYIRKGVELTPLFHGGEHMGGRRSGTLNVPYIVAMGEAMRLA---NEYLDFEKSHVRRLRDRLEDA 274 (382)
T ss_pred chhhCCCCc--eEEEEECCCCCCCCcccCCCCCCCcccCCcChHHHHHHHHHHHHH---HHhHHHHHHHHHHHHHHHHHH
Confidence 999888667 68887754321 01110 00123446667777777777532 445677788999999999999
Q ss_pred HHhc-CCceecCCc---eEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCC-----------------CC
Q 044773 164 LEKA-GISCLKSNA---GLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCT-----------------EP 222 (289)
Q Consensus 164 l~~~-g~~~~~~~~---g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~-----------------~~ 222 (289)
|.++ ++++..+.. +.++.+.+.. .. ...+...| .++||.+..|..|... ..
T Consensus 275 L~~~~~~~~~~~~~~~~~~~~~~~~~~-~~------~~~~~~~L-~~~gI~v~~g~~c~~~~~~~~~v~~~~g~~~~~~~ 346 (382)
T TIGR03403 275 LLELPDVFVVGDREHRVPNTILISIKG-VE------GEAMLWDL-NKAGIAASTGSACASEDLEANPVMVAIGADKELAH 346 (382)
T ss_pred HhcCCCEEEECCCCCCcCCEEEEEeCC-CC------HHHHHHhh-ccCCEEEEchhccCCCCCCcCHHHHHcCCChHHhC
Confidence 9876 677766531 2233455542 11 13455554 5779999988766311 12
Q ss_pred CeEEEEEec-CCHHHHHHHHHHHHHHHHHHHH
Q 044773 223 GWFRVCFAN-MSEDTLKLSMQRLKAFVDSITT 253 (289)
Q Consensus 223 ~~~Ris~~~-~~~e~l~~~l~~l~~~l~~~~~ 253 (289)
+.+|+|+.. ++++|++++++.|++++++...
T Consensus 347 ~~iR~s~~~~~t~~did~~~~~l~~~~~~~~~ 378 (382)
T TIGR03403 347 TAIRLSLSRFTTEEEIDYTIEVFKKAVQRLRA 378 (382)
T ss_pred eeEEEECCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 579999965 8999999999999998887553
No 170
>PRK06777 4-aminobutyrate aminotransferase; Provisional
Probab=99.78 E-value=5.8e-17 Score=148.96 Aligned_cols=213 Identities=16% Similarity=0.166 Sum_probs=141.2
Q ss_pred CccEEEEeCCCCCCcc-CCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEec
Q 044773 11 KVKGVLVTNPSNPLGT-TMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVYS 89 (289)
Q Consensus 11 ~~~~i~l~~p~NPtG~-~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~s 89 (289)
++.+|++...++..|. +++.+.+++|.++|+++|+++|+||+|.++.++|..+ ... .. +....+.+
T Consensus 198 ~iaavi~Epv~~~~G~~~~~~~~l~~l~~lc~~~g~llI~DEv~tg~gr~g~~~-~~~-~~-----------~~~pDiv~ 264 (421)
T PRK06777 198 QVAAILLEPIQGEGGFNVAPPEFMSALRTLCDEHGILLIADEVQTGFARTGKLF-AME-YY-----------DVKPDLIT 264 (421)
T ss_pred ceEEEEECCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCccCCchh-hhh-hc-----------CCCCCEEe
Confidence 4555454433777885 6789999999999999999999999999886666422 211 11 11112447
Q ss_pred CccccCCCCceEEEEEecCHHHHHHHHhc--cccCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 044773 90 LSKDLGLPGFRVGAIYSNDDTVVAAATKM--SSFGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEKA 167 (289)
Q Consensus 90 ~sK~~g~~G~r~G~i~~~~~~~~~~~~~~--~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 167 (289)
+||.++ +|+|+||++++ +.+.+.+... ...+..|++.+.++.+.|+... + ....++++++.+++.+.|+++
T Consensus 265 ~sK~l~-~G~pigav~~~-~~i~~~~~~~~~~~T~~~~p~~~aaa~a~L~~~~---~--~~l~~~~~~~g~~l~~~L~~l 337 (421)
T PRK06777 265 MAKSLG-GGMPISAVVGR-AEVMDAPAPGGLGGTYAGNPLAVAAALAVLDVIA---E--EKLCQRALILGAHLVEVLEKA 337 (421)
T ss_pred eehhhc-CCCceEEEEEc-HHHHhccCCCCCCCCCCcCHHHHHHHHHHHHHHH---h--ccHHHHHHHHHHHHHHHHHHH
Confidence 999999 99999999996 4555544322 2233478899998888886322 1 345566666677777777654
Q ss_pred ----C-CceecCCceEEEEEecCccc-cCCChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEEec-CCHHHHHHH
Q 044773 168 ----G-ISCLKSNAGLFCWVDMRHLL-SSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFAN-MSEDTLKLS 240 (289)
Q Consensus 168 ----g-~~~~~~~~g~~~~i~~~~~~-~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ris~~~-~~~e~l~~~ 240 (289)
+ +....+.|.++. +.+.... ......-...+...++ +.||.+.|+..|+ +++||+++. .++++++++
T Consensus 338 ~~~~~~i~~vrg~G~~~~-i~~~~~~~~~~~~~~~~~l~~~~~-~~Gv~i~~~~~~g----~~lr~~ppl~i~~~~i~~~ 411 (421)
T PRK06777 338 KASCPAIVDIRARGSMVA-VEFNDPQTGKPSPEFTRQYQRQAL-EEGLLLLSCGVHG----NVIRFLYPLTIPDAQFSKA 411 (421)
T ss_pred HHhCCCeEEecCceEEEE-EEEecCccCCccHHHHHHHHHHHH-hCCeEEeecCCCC----CEEEEeCCCCCCHHHHHHH
Confidence 2 334567776665 4333211 1111111123444444 6799999987665 489999953 699999999
Q ss_pred HHHHHHHHH
Q 044773 241 MQRLKAFVD 249 (289)
Q Consensus 241 l~~l~~~l~ 249 (289)
+++|.+++.
T Consensus 412 ~~~l~~~l~ 420 (421)
T PRK06777 412 LNILTRLLA 420 (421)
T ss_pred HHHHHHHHh
Confidence 999998863
No 171
>PLN02409 serine--glyoxylate aminotransaminase
Probab=99.78 E-value=6.5e-17 Score=147.97 Aligned_cols=222 Identities=17% Similarity=0.132 Sum_probs=154.8
Q ss_pred hHHHhhhC--CCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCC
Q 044773 2 YQLAQKRH--LKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTE 79 (289)
Q Consensus 2 l~~~~~~~--~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d 79 (289)
+++++..+ +++++|++++++||||.+++.+++.++++ |+++|+++|+|++++. +....++.
T Consensus 126 l~~~l~~~~~~~~k~v~~~~~~~~tG~~~~~~~i~~l~~-~~~~g~~~vvD~v~s~----g~~~id~~------------ 188 (401)
T PLN02409 126 LKSKLRQDTNHKIKAVCVVHNETSTGVTNDLAGVRKLLD-CAQHPALLLVDGVSSI----GALDFRMD------------ 188 (401)
T ss_pred HHHHHhhCcCCCccEEEEEeecccccccCCHHHHHHHHh-hhccCcEEEEEccccc----CCcccccc------------
Confidence 44555542 37899999999999999999555555555 9999999999999872 22222222
Q ss_pred CCCceEEEecCccccCCCCceEEEEEecCHHHHHHHHhc-----------------c-c--cCCCChHHHHHHHHHhCCc
Q 044773 80 VWNRVHIVYSLSKDLGLPGFRVGAIYSNDDTVVAAATKM-----------------S-S--FGLVSSQTQYLLSALLSDK 139 (289)
Q Consensus 80 ~~~~~i~i~s~sK~~g~~G~r~G~i~~~~~~~~~~~~~~-----------------~-~--~~~~~~~~q~~~~~~l~~~ 139 (289)
.++.++++.|.+|+++.| .++||++++++.+ +.+... . . .++++...+.++..+++..
T Consensus 189 ~~~~D~~~~s~~K~l~~P-~G~G~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~Tp~~~~~~al~~al~~~ 266 (401)
T PLN02409 189 EWGVDVALTGSQKALSLP-TGLGIVCASPKAL-EASKTAKSPRVFFDWADYLKFYKLGTYWPYTPSIQLLYGLRAALDLI 266 (401)
T ss_pred ccCccEEEEcCccccCcC-CCcceeEECHHHH-HHHhcCCCCCeecCHHHHHHHHhcCCCCCCCccHHHHHHHHHHHHHH
Confidence 235568888889999643 3699999965544 333211 0 0 1123345556666666532
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceecCC----ceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCC
Q 044773 140 KFAQNYISENKKRLKQRHRKLVSGLEKAGISCLKSN----AGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGS 215 (289)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~----~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~ 215 (289)
. +.-.++.+++++++.+++.+.|++.|+++..++ .+...++.+++..+. .++...+++++||.+.+|.
T Consensus 267 ~--~~G~e~i~~~~~~l~~~l~~~L~~~g~~~~~~~~~~~s~~v~~~~~p~~~~~------~~l~~~l~~~~~i~i~~G~ 338 (401)
T PLN02409 267 F--EEGLENVIARHARLGEATRLAVEAWGLKLCTKKPEWRSDTVTAVVVPEGIDS------AEIVKNAWKKYNLSLGLGL 338 (401)
T ss_pred H--HhhHHHHHHHHHHHHHHHHHHHHHcCCeeccCChhhcccceEEEeCCCCCCH------HHHHHHHHHhCCEEEEcCC
Confidence 1 333677889999999999999988888876542 223455666644332 4577788889999999887
Q ss_pred CCCCCCCCeEEEEE-ecCCHHHHHHHHHHHHHHHHHHH
Q 044773 216 SCHCTEPGWFRVCF-ANMSEDTLKLSMQRLKAFVDSIT 252 (289)
Q Consensus 216 ~f~~~~~~~~Ris~-~~~~~e~l~~~l~~l~~~l~~~~ 252 (289)
.- .....|||+. +.++.+++..++.+|.+++.+..
T Consensus 339 ~~--~~~~~~Rig~~g~~~~~~~~~~~~~~~~~l~~~g 374 (401)
T PLN02409 339 NK--VAGKVFRIGHLGNVNELQLLGALAGVEMVLKDVG 374 (401)
T ss_pred Cc--ccCCEEEEcCCCCCCHHHHHHHHHHHHHHHHHcC
Confidence 52 2357899999 55899999999999999988765
No 172
>PRK08360 4-aminobutyrate aminotransferase; Provisional
Probab=99.78 E-value=8.2e-17 Score=148.65 Aligned_cols=215 Identities=15% Similarity=0.168 Sum_probs=137.8
Q ss_pred CCccEEEEeCC-CCCCccCCC-HHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccC-hhhhhhccccccCCCCCceEE
Q 044773 10 LKVKGVLVTNP-SNPLGTTMS-RNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVS-IMEILKDRNCENTEVWNRVHI 86 (289)
Q Consensus 10 ~~~~~i~l~~p-~NPtG~~~~-~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~-~~~~~~~~~~~~~d~~~~~i~ 86 (289)
.++.+|+++ | +||+|.+++ .+.+++|.++|+++|+++|+||+|.+++++|..+.. ...+ ..+
T Consensus 203 ~~iAAvi~e-P~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~G~~~a~~~~~~----------~pD---- 267 (443)
T PRK08360 203 EGVAALFAE-PIQGDAGMIVPPEDYFKKLKKILDEHGILLVVDEVQSGLGRTGKWFAIEHFGV----------EPD---- 267 (443)
T ss_pred CCeEEEEEC-CccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCccchhhhhcCC----------CCC----
Confidence 467776665 6 799999887 558999999999999999999999988666643211 1112 112
Q ss_pred EecCccccCCCCceEEEEEecCHHHHHHHHhc--cccCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHH
Q 044773 87 VYSLSKDLGLPGFRVGAIYSNDDTVVAAATKM--SSFGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGL 164 (289)
Q Consensus 87 i~s~sK~~g~~G~r~G~i~~~~~~~~~~~~~~--~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l 164 (289)
+.++||++| +|+|+||++++ +.+.+.+... ......+++.+.++.++++...- + ...++++++.+++.+.|
T Consensus 268 iitlsK~l~-~G~pigav~~~-~~i~~~~~~~~~~~T~~~~p~~~aaa~a~l~~l~~-~----~l~~~~~~~g~~l~~~L 340 (443)
T PRK08360 268 IITLGKPLG-GGLPISATIGR-AEIMDSLPPLAHAFTLSGNPVASAAALAVIEEIEE-K----NLLKRAEKLGNYTKKRL 340 (443)
T ss_pred EEEeccccc-CCceeEEEEEc-HHHHhhhcCCCCCCCCCcCHHHHHHHHHHHHHHHH-c----CHHHHHHHHHHHHHHHH
Confidence 347899999 99999999995 4455555432 22233677888887777764321 1 23344455555555555
Q ss_pred Hhc----CCceecCCceEEEEEecCcccc--CCChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEEec-CCHHHH
Q 044773 165 EKA----GISCLKSNAGLFCWVDMRHLLS--SNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFAN-MSEDTL 237 (289)
Q Consensus 165 ~~~----g~~~~~~~~g~~~~i~~~~~~~--~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ris~~~-~~~e~l 237 (289)
+++ ++......-|.++-+++.+... .........+...++ ++||.+.+.. ...+|++++. ++++++
T Consensus 341 ~~l~~~~~~v~~vrg~Gl~~gie~~~~~~~~~~~~~~~~~~~~~l~-~~Gi~~~~~~------~~~lr~~P~l~~t~~~i 413 (443)
T PRK08360 341 EEMKKKHELIGDVRGIGLMIGVDLVKDRETKERAYEEAAKVVWRAW-ELGLIVTFFS------GNVLRIQPPLTIEKEVL 413 (443)
T ss_pred HHHHHhCCCeeeeeccceEEEEEEecCCcccCccHHHHHHHHHHHH-HCCeEEeecC------CCEEEEeCCCCCCHHHH
Confidence 443 2211122234555566543211 111122234666665 6799986531 3579998854 799999
Q ss_pred HHHHHHHHHHHHHHHH
Q 044773 238 KLSMQRLKAFVDSITT 253 (289)
Q Consensus 238 ~~~l~~l~~~l~~~~~ 253 (289)
+++++++.+++.....
T Consensus 414 d~~~~~l~~~l~~~~~ 429 (443)
T PRK08360 414 DEGLDILEEAIEDVEE 429 (443)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 9999999999987643
No 173
>cd06452 SepCysS Sep-tRNA:Cys-tRNA synthase. This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Cys-tRNA(Cys) is produced by O-phosphoseryl-tRNA synthetase which ligates O-phosphoserine (Sep) to tRNA(Cys), and Sep-tRNA:Cys-tRNA synthase (SepCysS) converts Sep-tRNA(Cys) to Cys-tRNA(Cys), in methanogenic archaea. SepCysS forms a dimer, each monomer is composed of a large and small domain; the larger, a typical pyridoxal 5'-phosphate (PLP)-dependent-like enzyme fold. In the active site of each monomer, PLP is covalently bound to a conserved Lys residue near the dimer interface.
Probab=99.77 E-value=8.2e-17 Score=145.39 Aligned_cols=208 Identities=13% Similarity=0.132 Sum_probs=128.9
Q ss_pred CCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEec
Q 044773 10 LKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVYS 89 (289)
Q Consensus 10 ~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~s 89 (289)
+++++|++++|+||||.+.+ +++|.++|+++++++|+|++|.. +....+..++ +.+++++|
T Consensus 138 ~~~~lv~l~~p~n~tG~~~~---~~~i~~~~~~~~~~vivD~a~~~----g~~~~~~~~~------------~~d~~~~s 198 (361)
T cd06452 138 KPPALALLTHVDGNYGNLHD---AKKIAKVCHEYGVPLLLNGAYTV----GRMPVSGKEL------------GADFIVGS 198 (361)
T ss_pred CCceEEEEECCCCCCeeecc---HHHHHHHHHHcCCeEEEECCccc----CCcCCCHHHc------------CCCEEEec
Confidence 36899999999999998866 88999999999999999999983 2211222222 45689999
Q ss_pred CccccCCCCceEEEEEecCHHHHHHHHhccccCCC--------C--hHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHH
Q 044773 90 LSKDLGLPGFRVGAIYSNDDTVVAAATKMSSFGLV--------S--SQTQYLLSALLSDKKFAQNYISENKKRLKQRHRK 159 (289)
Q Consensus 90 ~sK~~g~~G~r~G~i~~~~~~~~~~~~~~~~~~~~--------~--~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 159 (289)
+||+++ ++.|+||++++++ +.+.+......+.. + ......+...+.. +.+++++..+. .++.++
T Consensus 199 ~~K~l~-~~~~~G~l~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~---~~~~~~~~~~~-~~~~~~ 272 (361)
T cd06452 199 GHKSMA-ASAPIGVLATTEE-WADIVFRTSQMFKIKEVELLGCTLRGAPLVTLMASFPH---VKERVKRWDEE-VEKARW 272 (361)
T ss_pred CCcccc-CCCCeEEEEECHH-HHHHHhccccccccceeeeeccccCchHHHHHHHHHHH---HHHHHHHHHHH-HHHHHH
Confidence 999998 5669999999654 44444332211111 1 1122222222221 12333333333 334578
Q ss_pred HHHHHHhc-CCceec--CCceEEEEEecCccccC--CChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEEecCCH
Q 044773 160 LVSGLEKA-GISCLK--SNAGLFCWVDMRHLLSS--NTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSE 234 (289)
Q Consensus 160 l~~~l~~~-g~~~~~--~~~g~~~~i~~~~~~~~--~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ris~~~~~~ 234 (289)
+.+.|+++ |+++.. +....++.++.+..... .......++...|+ ++||.+.+ . ....++|++....++
T Consensus 273 l~~~L~~l~g~~v~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~L~-~~gI~~~~---~--~~~~~~ri~~~g~~~ 346 (361)
T cd06452 273 FVAELEKIEGIKQLGEKPKNHDLMFFETPSFDEIAKKHKRRGYFLYSELK-KRGIHGIK---P--GLTRYFKLSTYGLTW 346 (361)
T ss_pred HHHHHhcCCCeEEECCCCCCCceEEEEcCCcchhhhhccccchhHHHHHH-HcCceEEc---C--CCceEEEEEecCCCH
Confidence 99999988 888752 22233455565421000 00011124677775 56998532 1 224589999933589
Q ss_pred HHHHHHHHHHHHHH
Q 044773 235 DTLKLSMQRLKAFV 248 (289)
Q Consensus 235 e~l~~~l~~l~~~l 248 (289)
++++.+++.|++++
T Consensus 347 e~~~~l~~al~~~~ 360 (361)
T cd06452 347 EQVEYVVDAFKEIA 360 (361)
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999998764
No 174
>TIGR03246 arg_catab_astC succinylornithine transaminase family. Members of the seed alignment for this protein family are the enzyme succinylornithine transaminase (EC 2.6.1.81), which catalyzes the third of five steps in arginine succinyltransferase (AST) pathway, an ammonia-releasing pathway of arginine degradation. All seed alignment sequences are found within arginine succinyltransferase operons, and all proteins that score above 820.0 bits should function as succinylornithine transaminase. However, a number of sequences extremely closely related in sequence, found in different genomic contexts, are likely to act in different biological processes and may act on different substrates. This model is desigated subfamily rather than equivalog, pending further consideration, for this reason.
Probab=99.77 E-value=6.5e-17 Score=147.77 Aligned_cols=214 Identities=18% Similarity=0.181 Sum_probs=142.3
Q ss_pred HHHhhhCCCccEEEEeCCCCCCccCC-CHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCC
Q 044773 3 QLAQKRHLKVKGVLVTNPSNPLGTTM-SRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVW 81 (289)
Q Consensus 3 ~~~~~~~~~~~~i~l~~p~NPtG~~~-~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 81 (289)
++++. +++++|+++.++++.|... +.+.+++|.++|++||+++|+||+|.+++.+|..+ .. +. .
T Consensus 173 ~~~l~--~~~aavi~Epi~~~~G~~~~~~~~l~~l~~lc~~~g~llI~DEv~tG~Gr~G~~~-a~-~~-----------~ 237 (397)
T TIGR03246 173 KALIS--DKTCAVIVEPIQGEGGVVPADPAFLKGLRELCDRHNALLIFDEVQTGVGRTGELY-AY-MH-----------Y 237 (397)
T ss_pred HHHhc--cCeEEEEEecccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhcCCccccch-hh-hh-----------c
Confidence 44443 3577777774466667654 88999999999999999999999998876655432 11 11 1
Q ss_pred CceEEEecCccccCCCCceEEEEEecCHHHHHHHHhcc--ccCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHH
Q 044773 82 NRVHIVYSLSKDLGLPGFRVGAIYSNDDTVVAAATKMS--SFGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRK 159 (289)
Q Consensus 82 ~~~i~i~s~sK~~g~~G~r~G~i~~~~~~~~~~~~~~~--~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 159 (289)
+....+.++||.+| +|+++||++++ +.+.+.+.... ..+..+++.+.++.+.++... -.+..+.++++.++
T Consensus 238 gv~pDi~t~~K~lg-gG~pigav~~~-~~i~~~~~~~~~~~t~~~~p~~~aaa~a~l~~~~-----~~~l~~~~~~~~~~ 310 (397)
T TIGR03246 238 GVTPDILTSAKALG-GGFPIGAMLTT-TEIAAHLKVGTHGTTYGGNPLACAVAGKVLDLVN-----TPELLAGVKQRHDL 310 (397)
T ss_pred CCCCCEEEeehhhh-CCcceeEEEEc-HHHHHhccCCCcCCCCCCCHHHHHHHHHHHHHHh-----hccHHHHHHHHHHH
Confidence 12233458999998 89999999995 44555554321 223367788777777776421 13456778888888
Q ss_pred HHHHHHhcC--C---ceecCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEEec-CC
Q 044773 160 LVSGLEKAG--I---SCLKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFAN-MS 233 (289)
Q Consensus 160 l~~~l~~~g--~---~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ris~~~-~~ 233 (289)
+.+.|++++ . ....+. |.++.+.+..... .....++..|+ ++||.+.+. +.+++|++++. ++
T Consensus 311 l~~~L~~l~~~~~~~~~vrg~-G~~~~i~~~~~~~----~~~~~~~~~l~-~~Gv~~~~~------g~~~lR~~p~~~~t 378 (397)
T TIGR03246 311 FVDGLEKINARYNVFSEIRGK-GLLIGAVLTEAYQ----GKAKQFVNAAA-EEGVIALIA------GPNVVRFAPSLVIS 378 (397)
T ss_pred HHHHHHHHHhcCCCeEeeecC-ceEEEEEEcCchh----hHHHHHHHHHH-HCCeEEeec------CCCEEEEeCCCCCC
Confidence 888887753 1 112233 3444455532111 12345777776 569998763 23689998743 79
Q ss_pred HHHHHHHHHHHHHHHHH
Q 044773 234 EDTLKLSMQRLKAFVDS 250 (289)
Q Consensus 234 ~e~l~~~l~~l~~~l~~ 250 (289)
++++++++++|.+++++
T Consensus 379 ~~~i~~~~~~l~~~l~~ 395 (397)
T TIGR03246 379 DDDIDEGLARFERAIEQ 395 (397)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999999988864
No 175
>PRK04612 argD acetylornithine transaminase protein; Provisional
Probab=99.77 E-value=9.6e-17 Score=146.75 Aligned_cols=218 Identities=16% Similarity=0.142 Sum_probs=145.2
Q ss_pred hHHHhhhCCCccEEEEeCCCCCCccCCC--HHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCC
Q 044773 2 YQLAQKRHLKVKGVLVTNPSNPLGTTMS--RNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTE 79 (289)
Q Consensus 2 l~~~~~~~~~~~~i~l~~p~NPtG~~~~--~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d 79 (289)
+++++. ++..+.++..|.+++|-+++ .+.+++|.++|+++++++|+||+|.+++.+|.. +...
T Consensus 179 l~~~~~--~~~~aavi~eP~~~~gg~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~----~a~~--------- 243 (408)
T PRK04612 179 LEAAMA--GGDVAAVMLEPIQGEGGVMPAAPGFLARVRALCDQHDALLVLDEIQCGMGRTGTL----FAHW--------- 243 (408)
T ss_pred HHHhhC--CCCEEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCCch----hhhh---------
Confidence 344443 23456688889777776665 679999999999999999999999987665532 1111
Q ss_pred CCCceEEEecCccccCCCCceEEEEEecCHHHHHHHHhc--cccCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHH
Q 044773 80 VWNRVHIVYSLSKDLGLPGFRVGAIYSNDDTVVAAATKM--SSFGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRH 157 (289)
Q Consensus 80 ~~~~~i~i~s~sK~~g~~G~r~G~i~~~~~~~~~~~~~~--~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 157 (289)
..+.++.+.+|||.+| +|+|+||++++++ +.+.+... ...+..+++.+.++.+.|+... + ....++++++.
T Consensus 244 ~~~~~pdi~t~~K~l~-~G~piga~~~~~~-~~~~~~~~~~~~t~~~~p~~~aaa~a~L~~~~---~--~~l~~~~~~~g 316 (408)
T PRK04612 244 QEQVTPDIVTLAKALG-GGFPIGAMLAGPK-VAETMQFGAHGTTFGGNPLAAAVARVALRKLA---S--PQIAANVARQS 316 (408)
T ss_pred hcCCCCCEEEEcchhc-CCCceEEEEECHH-HHhhhcCCCcCCCCCCCHHHHHHHHHHHHHHH---h--ccHHHHHHHHH
Confidence 2255677899999998 8999999999644 45444332 2223377888888888876432 1 23455556666
Q ss_pred HHHHHHHHhc----CCc-eecCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEEec-
Q 044773 158 RKLVSGLEKA----GIS-CLKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFAN- 231 (289)
Q Consensus 158 ~~l~~~l~~~----g~~-~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ris~~~- 231 (289)
+++.+.|+++ ++. ...+. |.++.+.+..... ....++...+. ++||.+.|. +...+|+.+..
T Consensus 317 ~~l~~~l~~l~~~~~~i~~vrg~-Gl~~~i~~~~~~~----~~a~~i~~~l~-~~Gvlv~~~------g~~~lRl~Ppl~ 384 (408)
T PRK04612 317 AALRAGLEALNAEFGVFAQVRGR-GLMLGAVLAPAHA----GQAGAILDLAA-EHGLLLLQA------GPDVLRFVPALN 384 (408)
T ss_pred HHHHHHHHHHHhhCCCeeeeecc-ceEEEEEecCchh----hHHHHHHHHHH-HCCeEEeeC------CCCEEEEcCCcc
Confidence 6666666554 221 22333 4555566542111 11234566555 779999763 23689999854
Q ss_pred CCHHHHHHHHHHHHHHHHHHHH
Q 044773 232 MSEDTLKLSMQRLKAFVDSITT 253 (289)
Q Consensus 232 ~~~e~l~~~l~~l~~~l~~~~~ 253 (289)
.++++++++++++.+++.+..+
T Consensus 385 it~eeid~~l~~l~~~l~~~~~ 406 (408)
T PRK04612 385 LTDAELADGLARLRLALADYVA 406 (408)
T ss_pred CCHHHHHHHHHHHHHHHHHHhh
Confidence 7999999999999999987543
No 176
>TIGR01976 am_tr_V_VC1184 cysteine desulfurase family protein, VC1184 subfamily. This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family (pfam00266). The most closely related characterized proteins are active as cysteine desulfurases, selenocysteine lyases, or both; some are involved in FeS cofactor biosynthesis and are designated NifS. An active site Cys residue present in those sequences, in motifs resembling GHHC or GSAC, is not found in this family. The function of members of this family is unknown, but seems unlike to be as an aminotransferase.
Probab=99.76 E-value=5.3e-17 Score=148.34 Aligned_cols=203 Identities=15% Similarity=0.190 Sum_probs=132.7
Q ss_pred CCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEec
Q 044773 10 LKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVYS 89 (289)
Q Consensus 10 ~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~s 89 (289)
+++++|++++|+||||.+.+ +++|.++|+++|+++++|++|.. +.....+.+ .+.++++.|
T Consensus 155 ~~~~lv~i~~~~n~tG~~~~---~~~i~~~~~~~~~~~ivD~a~~~----~~~~~~~~~------------~~~d~~~~s 215 (397)
T TIGR01976 155 PRTRLVAVTAASNTLGSIVD---LAAITELVHAAGALVVVDAVHYA----PHGLIDVQA------------TGADFLTCS 215 (397)
T ss_pred CCceEEEEeCCCCCCCccCC---HHHHHHHHHHcCCEEEEehhhhc----cccCCCHHH------------cCCCEEEEe
Confidence 46899999999999999998 99999999999999999999852 222223222 245577899
Q ss_pred CccccCCCCceEEEEEecCHHHHHHHHhcc-cc-----------CCCChHHHHHHHHHhCCchH------------HHHH
Q 044773 90 LSKDLGLPGFRVGAIYSNDDTVVAAATKMS-SF-----------GLVSSQTQYLLSALLSDKKF------------AQNY 145 (289)
Q Consensus 90 ~sK~~g~~G~r~G~i~~~~~~~~~~~~~~~-~~-----------~~~~~~~q~~~~~~l~~~~~------------~~~~ 145 (289)
++|.+| + |+|+++++++.+ +.+.... .+ ++.+.....++..+++.... +...
T Consensus 216 ~~K~~g-~--~~G~l~~~~~~~-~~l~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~~~~~ 291 (397)
T TIGR01976 216 AYKFFG-P--HMGILWGRPELL-MNLPPYKLTFSYDTGPERFELGTPQYELLAGVVAAVDYLAGLGESANGSRRERLVAS 291 (397)
T ss_pred chhhcC-C--ceEEEEEcHHHH-hhCCCccccCccCCCcchhcCCCCCHHHHHHHHHHHHHHHHhCcccccchhhhhhHH
Confidence 999986 3 589999965543 3322111 00 11222222333333221100 0112
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcC-CceecC-----CceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCC
Q 044773 146 ISENKKRLKQRHRKLVSGLEKAG-ISCLKS-----NAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHC 219 (289)
Q Consensus 146 ~~~~~~~~~~~~~~l~~~l~~~g-~~~~~~-----~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~ 219 (289)
.++.+++..+..+++.+.|++++ +++..+ .++ ++.+.++.. + ..++.+.|. ++||.+..|..|..
T Consensus 292 ~~~~~~~~~~l~~~l~~~L~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~------~~~l~~~L~-~~gI~v~~~~~~~~ 362 (397)
T TIGR01976 292 FQAIDAYENRLAEYLLVGLSDLPGVTLYGVARLAARVP-TVSFTVHGL-P------PQRVVRRLA-DQGIDAWAGHFYAV 362 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCccCCCc-eEEEEeCCc-C------HHHHHHHHH-HCCeEEEeCccchH
Confidence 56677788888899999998874 777654 334 444555421 1 134666664 67999998876641
Q ss_pred ---------CCCCeEEEEEec-CCHHHHHHHHHHH
Q 044773 220 ---------TEPGWFRVCFAN-MSEDTLKLSMQRL 244 (289)
Q Consensus 220 ---------~~~~~~Ris~~~-~~~e~l~~~l~~l 244 (289)
...+++|||+.. ++++|++.+++.|
T Consensus 363 ~~~~~~~~~~~~~~iRis~~~~~t~~di~~l~~~l 397 (397)
T TIGR01976 363 RLLRRLGLNDEGGVVRVGLAHYNTAEEVDRLLEAL 397 (397)
T ss_pred HHHHHhCCCCCCCeEEEEeeccCCHHHHHHHHHhC
Confidence 134689999954 7999999998764
No 177
>TIGR03402 FeS_nifS cysteine desulfurase NifS. Members of this protein family are NifS, one of several related families of cysteine desulfurase involved in iron-sulfur (FeS) cluster biosynthesis. NifS is part of the NIF system, usually associated with other nif genes involved in nitrogenase expression and nitrogen fixation. The protein family is given a fairly broad interpretation here. It includes a clade nearly always found in extended nitrogen fixation genomic regions, plus a second clade more closely related to the first than to IscS and also part of NifS-like/NifU-like systems. This model does not extend to a more distantly clade found in the epsilon proteobacteria such as Helicobacter pylori, also named NifS in the literature, built instead in TIGR03403.
Probab=99.76 E-value=6.2e-17 Score=147.08 Aligned_cols=215 Identities=16% Similarity=0.141 Sum_probs=145.2
Q ss_pred HHHhhhCCCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCC
Q 044773 3 QLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWN 82 (289)
Q Consensus 3 ~~~~~~~~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 82 (289)
++++. ++++++++++|+||||.+++ +++|.++|+++|+++++|++|+. +....++.+ .+
T Consensus 130 ~~~i~--~~~~lv~i~~~~n~tG~~~~---~~~I~~l~~~~g~~vivD~~~~~----g~~~~~~~~------------~~ 188 (379)
T TIGR03402 130 RAAIT--DDTALVSVMWANNETGTIFP---IEEIGEIAKERGALFHTDAVQAV----GKIPIDLKE------------MN 188 (379)
T ss_pred HHhcC--CCcEEEEEEcccCCeeeccc---HHHHHHHHHHcCCEEEEECcccc----cccccCccc------------CC
Confidence 44443 46899999999999999999 77899999999999999999973 332233222 24
Q ss_pred ceEEEecCccccCCCCceEEEEEecCHHHHH-HH-----HhccccCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHH
Q 044773 83 RVHIVYSLSKDLGLPGFRVGAIYSNDDTVVA-AA-----TKMSSFGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQR 156 (289)
Q Consensus 83 ~~i~i~s~sK~~g~~G~r~G~i~~~~~~~~~-~~-----~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~ 156 (289)
.++++.|.+|.+|.+| +|++++++..... .. ......++.+.....++..+++. +.+++++..++++++
T Consensus 189 ~D~~~~s~~K~~gp~G--~g~l~v~~~~~~~p~~~g~~~~~~~~~gt~~~~~~~~l~~al~~---~~~~~~~~~~~~~~l 263 (379)
T TIGR03402 189 IDMLSLSGHKLHGPKG--VGALYIRKGTRFRPLLRGGHQERGRRAGTENVPGIVGLGKAAEL---ATEHLEEENTRVRAL 263 (379)
T ss_pred CCEEEEcHHHcCCCCc--eEEEEECCCCCCCCcccCCccCCCcCCCCccHHHHHHHHHHHHH---HHHhHHHHHHHHHHH
Confidence 5588889999666455 8888876442111 00 00011233444555555555543 245677777889999
Q ss_pred HHHHHHHHHh-c-CCceecCC-----ceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCC---------
Q 044773 157 HRKLVSGLEK-A-GISCLKSN-----AGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCT--------- 220 (289)
Q Consensus 157 ~~~l~~~l~~-~-g~~~~~~~-----~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~--------- 220 (289)
++++.+.|.+ . ++++..+. +.+.+++... + ..++...| +++||.+.+|..|...
T Consensus 264 ~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~------~~~~~~~l-~~~gI~v~~g~~c~~~~~~~~~~~~ 333 (379)
T TIGR03402 264 RDRLEAGLLARIPDARLNGDPTKRLPNTVNISFEYI---E------GEAILLLL-DMEGICASSGSACTSGSLEPSHVLR 333 (379)
T ss_pred HHHHHHHHHhhCCCEEEeCCCccCCCCEEEEEecCC---C------HHHHHHhh-ccCCEEEEchhhcCCCCCCcCHHHH
Confidence 9999999875 4 66665432 2233444321 1 13466554 5789999999877542
Q ss_pred --------CCCeEEEEEec-CCHHHHHHHHHHHHHHHHHHHH
Q 044773 221 --------EPGWFRVCFAN-MSEDTLKLSMQRLKAFVDSITT 253 (289)
Q Consensus 221 --------~~~~~Ris~~~-~~~e~l~~~l~~l~~~l~~~~~ 253 (289)
..+.+|+|++. ++++|++.+++.|++++++...
T Consensus 334 ~lg~~~~~~~~~vR~S~~~~~t~~di~~~~~~l~~~~~~~~~ 375 (379)
T TIGR03402 334 AMGVPHTAAHGSIRFSLSRYNTEEDIDYVLEVLPPIIARLRA 375 (379)
T ss_pred HcCCChhhcCceEEEEcCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 13689999965 7999999999999998877543
No 178
>TIGR02407 ectoine_ectB diaminobutyrate--2-oxoglutarate aminotransferase. Members of this family of class III pyridoxal-phosphate-dependent aminotransferases are diaminobutyrate--2-oxoglutarate aminotransferase (EC 2.6.1.76) that catalyze the first step in ectoine biosynthesis from L-aspartate beta-semialdehyde. This family is readily separated phylogenetically from enzymes with the same substrate and product but involved in other process such as siderophore or 1,3-diaminopropane biosynthesis. The family TIGR00709 previously included both groups but has now been revised to exclude the ectoine biosynthesis proteins of this family. Ectoine is a compatible solute particularly effective in conferring salt tolerance.
Probab=99.76 E-value=6.3e-17 Score=148.37 Aligned_cols=208 Identities=15% Similarity=0.141 Sum_probs=137.9
Q ss_pred CccEEEEeCCCCCCcc-CCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccC-hhhhhhccccccCCCCCceEEEe
Q 044773 11 KVKGVLVTNPSNPLGT-TMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVS-IMEILKDRNCENTEVWNRVHIVY 88 (289)
Q Consensus 11 ~~~~i~l~~p~NPtG~-~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~-~~~~~~~~~~~~~d~~~~~i~i~ 88 (289)
++.+|++...+++.|. +.+.+.+++|.++|+++|+++|+||++.+++.+|..+.. ...+.+ | +.
T Consensus 194 ~~aavi~Epi~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~tG~GRtG~~~a~~~~~v~P----------D----i~ 259 (412)
T TIGR02407 194 LPAAVILETVQGEGGINVASDEWLQRLEKLCRRHDILLIVDDIQAGCGRTGTFFSFEPAGIEP----------D----IV 259 (412)
T ss_pred ceEEEEeccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCccchhHHhcccCCCC----------C----EE
Confidence 3456554433888888 678999999999999999999999999987666543211 112211 2 55
Q ss_pred cCccccCCC-CceEEEEEecCHHHHHHHHh--ccccCCCChHHHHHHH---H-HhCCchHHHHHHHHHHHHHHHHHHHHH
Q 044773 89 SLSKDLGLP-GFRVGAIYSNDDTVVAAATK--MSSFGLVSSQTQYLLS---A-LLSDKKFAQNYISENKKRLKQRHRKLV 161 (289)
Q Consensus 89 s~sK~~g~~-G~r~G~i~~~~~~~~~~~~~--~~~~~~~~~~~q~~~~---~-~l~~~~~~~~~~~~~~~~~~~~~~~l~ 161 (289)
++||.+| + |+|+|+++++++ + +.+.. ....+..|++...++. . ++++.++ .++++++.+.++++.+.+.
T Consensus 260 ~~~K~lg-~~G~pigav~~~~~-~-~~~~~~~~~~T~~gnpl~~aaa~a~l~~~i~~~~l-~~~~~~~g~~l~~~l~~l~ 335 (412)
T TIGR02407 260 CLSKSIS-GYGLPLALTLIKPE-L-DVWKPGEHNGTFRGNNLAFVTATAALEYYWSDDAF-EKAVQRKSEIIQERLDRIV 335 (412)
T ss_pred Eechhcc-CCccceeEEEEchh-h-hccCCCccCCCCCccHHHHHHHHHHHHHHhcccHH-HHHHHHHHHHHHHHHHHHH
Confidence 7899998 6 999999999655 3 32221 1122235666444322 2 3555544 5666666666666655544
Q ss_pred HHHHhcCCceecCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEEec-CCHHHHHHH
Q 044773 162 SGLEKAGISCLKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFAN-MSEDTLKLS 240 (289)
Q Consensus 162 ~~l~~~g~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ris~~~-~~~e~l~~~ 240 (289)
+.+.. +.......|+++|+.+++.. ....+...++ +.||.+.+...+ ...+||+++. +++++++.+
T Consensus 336 ~~~~~--~~~~vrg~Gl~~~l~l~~~~------~~~~~~~~~~-~~Gv~v~~~~~~----~~~lr~~p~l~~t~~~i~~~ 402 (412)
T TIGR02407 336 AEYPE--LIKQVRGRGLMQGIECGDGD------LAGKIAKAAF-ENGLIIETSGPN----DEVIKLLPPLTIDEETLQQG 402 (412)
T ss_pred hhCCC--ceEeeecceeEEEEEecChH------HHHHHHHHHH-HCCCEEeccCCC----CCEEEEECCCCCCHHHHHHH
Confidence 44432 23445566889999987531 1234666665 679999875322 3579999964 799999999
Q ss_pred HHHHHHHHH
Q 044773 241 MQRLKAFVD 249 (289)
Q Consensus 241 l~~l~~~l~ 249 (289)
++++.++++
T Consensus 403 ~~~l~~~l~ 411 (412)
T TIGR02407 403 LDILEQAVE 411 (412)
T ss_pred HHHHHHHHh
Confidence 999999875
No 179
>PRK07495 4-aminobutyrate aminotransferase; Provisional
Probab=99.75 E-value=3.7e-16 Score=143.60 Aligned_cols=217 Identities=16% Similarity=0.154 Sum_probs=138.1
Q ss_pred CccEEEEeCC-CCCCc-cCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEe
Q 044773 11 KVKGVLVTNP-SNPLG-TTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVY 88 (289)
Q Consensus 11 ~~~~i~l~~p-~NPtG-~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~ 88 (289)
++.+|++... +| +| ..++.+.+++|.++|++||+++|+||+|.+++.+|..+ . . +..+.+..+.
T Consensus 198 ~iaavi~EPv~g~-~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~-a---~---------~~~gv~pDi~ 263 (425)
T PRK07495 198 RVAAIIIEPVQGE-GGFYPAPAAFMKALRELCDQHGILLIADEVQTGFARTGKLF-A---M---------EHHEVAADLT 263 (425)
T ss_pred ceEEEEECCccCC-CCCccCCHHHHHHHHHHHHHcCCEEEEechhhcCCcCCCce-e---e---------cccCCCCCEE
Confidence 4666544433 45 78 56799999999999999999999999999876665431 1 1 1224556689
Q ss_pred cCccccCCCCceEEEEEecCHHHHHHHHh--ccccCCCChHHHHHHHHHhC---CchHHHHHHHHHHHHHHHHHHHHHHH
Q 044773 89 SLSKDLGLPGFRVGAIYSNDDTVVAAATK--MSSFGLVSSQTQYLLSALLS---DKKFAQNYISENKKRLKQRHRKLVSG 163 (289)
Q Consensus 89 s~sK~~g~~G~r~G~i~~~~~~~~~~~~~--~~~~~~~~~~~q~~~~~~l~---~~~~~~~~~~~~~~~~~~~~~~l~~~ 163 (289)
+|||.++ +|+|+|++++++ .+.+.+.. ....+..|++.+.++.+.++ +.++ .++.+++.+.++++.+.+.+.
T Consensus 264 tlsK~l~-~G~pigav~~~~-~i~~~~~~~~~~~T~~~~pl~~aaa~a~l~~l~~~~l-~~~~~~~g~~l~~~L~~l~~~ 340 (425)
T PRK07495 264 TMAKGLA-GGFPLAAVTGRA-EIMDAPGPGGLGGTYGGNPLGIAAAHAVLDVIEEEDL-CERANQLGNRLKQRLASLRET 340 (425)
T ss_pred eehhhhc-CCccceEEEEcH-HHHhccCCCCcCCCCCCCHHHHHHHHHHHHHHHhchH-HHHHHHHHHHHHHHHHHHHhh
Confidence 9999998 899999999954 44444332 22233478888885555544 3333 444444455554444433332
Q ss_pred HHhcCCceecCCceEEEEEecCccccCC-ChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEEec-CCHHHHHHHH
Q 044773 164 LEKAGISCLKSNAGLFCWVDMRHLLSSN-TFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFAN-MSEDTLKLSM 241 (289)
Q Consensus 164 l~~~g~~~~~~~~g~~~~i~~~~~~~~~-~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ris~~~-~~~e~l~~~l 241 (289)
+ +.......-|+++|+.+.+..... .......+...++ ++|+.+.+.... .+.+||.++. .+++++++++
T Consensus 341 ~---~~i~~vrG~Gl~~~iel~~~~~~~~~~~~~~~~~~~~~-~~Gvl~~~~g~~----~~~~r~~Ppl~it~~~id~~~ 412 (425)
T PRK07495 341 V---PEIADIRGPGFMNAVEFNDADSGLPSAEFANRVRLKAL-EKGLILLTCGVH----GNVIRFLAPITIQDDVFAEAL 412 (425)
T ss_pred C---CCeeeeecCceEEEEEEecCCCCCccHHHHHHHHHHHH-HCCeEEeecCCC----CCEEEEeCCCccCHHHHHHHH
Confidence 2 211111122789999885432111 1111234555555 679998754221 3579999854 7999999999
Q ss_pred HHHHHHHHHHH
Q 044773 242 QRLKAFVDSIT 252 (289)
Q Consensus 242 ~~l~~~l~~~~ 252 (289)
++|.+++++..
T Consensus 413 ~~l~~~l~~~~ 423 (425)
T PRK07495 413 DILEASILEAS 423 (425)
T ss_pred HHHHHHHHHHh
Confidence 99999997653
No 180
>PRK06460 hypothetical protein; Provisional
Probab=99.74 E-value=5.1e-16 Score=140.71 Aligned_cols=132 Identities=17% Similarity=0.099 Sum_probs=93.2
Q ss_pred CCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEec
Q 044773 10 LKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVYS 89 (289)
Q Consensus 10 ~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~s 89 (289)
+++|+|++++|+||||.+++ +++|.++|+++|+++|+|++|... +. .. .+ ..+.++++.|
T Consensus 129 ~~tklV~l~sp~NPtG~v~d---~~~I~~la~~~g~~vivDea~~~~-~~---~~---~l----------~~~~divv~S 188 (376)
T PRK06460 129 KRYDVVFVENITNPLLRVVD---ITELSKVCKENGSILIVDATFSTP-IN---QK---PL----------ELGADIVVHS 188 (376)
T ss_pred CCceEEEEECCCCCCCcccC---HHHHHHHHHHcCCEEEEECCcCcc-cc---CC---hh----------hcCCCEEEee
Confidence 57899999999999999999 677899999999999999999742 11 11 11 1245689999
Q ss_pred CccccC-CCCceEEEEEecCHHHHHHHHhccccCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 044773 90 LSKDLG-LPGFRVGAIYSNDDTVVAAATKMSSFGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEKA 167 (289)
Q Consensus 90 ~sK~~g-~~G~r~G~i~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 167 (289)
+||+++ ..+.+.||+++++ .+.+.+.........+. ....+..++.. .++++.+.+++.++++++.+.|+++
T Consensus 189 ~sK~l~G~~~~~~G~~~~~~-~l~~~l~~~~~~~g~~~-~~~~a~~~l~~----~~~l~~r~~~~~~n~~~l~~~L~~~ 261 (376)
T PRK06460 189 ASKFLAGHNDVIAGLAAGYG-KLLNVIDQMRRTLGTSL-DPHAAYLTLRG----IKTLKIRMDVINRNAEQIAEFLEGH 261 (376)
T ss_pred cceeccCCCCceEEEEecCH-HHHHHHHHHHHhcCCCC-CHHHHHHHHhc----hhhHHHHHHHHHHHHHHHHHHHHcC
Confidence 999995 2347899999854 45555544332222221 22334444454 3446777888889999999999876
No 181
>cd06453 SufS_like Cysteine desulfurase (SufS)-like. This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to cysteine desulfurase (SufS) and selenocysteine lyase. SufS catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine; and selenocysteine lyase catalyzes the decomposition of L-selenocysteine.
Probab=99.74 E-value=9.4e-17 Score=145.51 Aligned_cols=203 Identities=16% Similarity=0.198 Sum_probs=134.2
Q ss_pred CCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEec
Q 044773 10 LKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVYS 89 (289)
Q Consensus 10 ~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~s 89 (289)
+++++|++++|+||||.+.+ +++|.++|+++++++++|++|... ....++.+ .+.++++.|
T Consensus 138 ~~~~~v~~~~~~~~tG~~~~---~~~i~~~~~~~~~~li~D~a~~~~----~~~~~~~~------------~~~d~~~~s 198 (373)
T cd06453 138 ERTKLVAVTHVSNVLGTINP---VKEIGEIAHEAGVPVLVDGAQSAG----HMPVDVQD------------LGCDFLAFS 198 (373)
T ss_pred CCceEEEEeCcccccCCcCC---HHHHHHHHHHcCCEEEEEhhhhcC----ceeeeccc------------cCCCEEEec
Confidence 47899999999999999999 889999999999999999998732 11112111 234577889
Q ss_pred CccccCCCCceEEEEEecCHHHHHHHHhcc---------------------cc--CCCChHHHHHHHHHhCCchHHHHHH
Q 044773 90 LSKDLGLPGFRVGAIYSNDDTVVAAATKMS---------------------SF--GLVSSQTQYLLSALLSDKKFAQNYI 146 (289)
Q Consensus 90 ~sK~~g~~G~r~G~i~~~~~~~~~~~~~~~---------------------~~--~~~~~~~q~~~~~~l~~~~~~~~~~ 146 (289)
++|.++. .++|+++++++.+ +.+.... .+ +.++.....++..+++... +..+
T Consensus 199 ~~K~~~~--~g~g~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~l~--~~g~ 273 (373)
T cd06453 199 GHKMLGP--TGIGVLYGKEELL-EEMPPYGGGGEMIEEVSFEETTYADLPHKFEAGTPNIAGAIGLGAAIDYLE--KIGM 273 (373)
T ss_pred cccccCC--CCcEEEEEchHHh-hcCCCeecCCCccccccccccccCCCccccCCCCCCHHHHHHHHHHHHHHH--HcCH
Confidence 9999974 5689999965443 3222111 01 1123334444444443211 1224
Q ss_pred HHHHHHHHHHHHHHHHHHHhc-CCceecCC--ceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCC----
Q 044773 147 SENKKRLKQRHRKLVSGLEKA-GISCLKSN--AGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHC---- 219 (289)
Q Consensus 147 ~~~~~~~~~~~~~l~~~l~~~-g~~~~~~~--~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~---- 219 (289)
++..++.+++++++.+.|.++ ++++..+. .+.++++.++.. +..++.+.|. ++||.+.+|..+..
T Consensus 274 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~i~~~l~-~~gi~i~~g~~~~~~~~~ 345 (373)
T cd06453 274 EAIAAHEHELTAYALERLSEIPGVRVYGDAEDRAGVVSFNLEGI-------HPHDVATILD-QYGIAVRAGHHCAQPLMR 345 (373)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCeEEeCCccccCCeEEEEECCc-------CHHHHHHHHH-HCCEEeccCccchhHHHH
Confidence 667777888889999999887 67765322 133555665431 1235666665 67999988876532
Q ss_pred --CCCCeEEEEEec-CCHHHHHHHHHHH
Q 044773 220 --TEPGWFRVCFAN-MSEDTLKLSMQRL 244 (289)
Q Consensus 220 --~~~~~~Ris~~~-~~~e~l~~~l~~l 244 (289)
...+++|++++. +++++++++++.|
T Consensus 346 ~~~~~~~iRis~~~~~t~~di~~~~~~l 373 (373)
T cd06453 346 RLGVPGTVRASFGLYNTEEEIDALVEAL 373 (373)
T ss_pred HhCCCCeEEEEecCCCCHHHHHHHHhhC
Confidence 125789999975 7999999998764
No 182
>PRK08117 4-aminobutyrate aminotransferase; Provisional
Probab=99.74 E-value=3.1e-16 Score=144.90 Aligned_cols=215 Identities=13% Similarity=0.090 Sum_probs=137.0
Q ss_pred CccEEEEeCC-CCCCccC-CCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEe
Q 044773 11 KVKGVLVTNP-SNPLGTT-MSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVY 88 (289)
Q Consensus 11 ~~~~i~l~~p-~NPtG~~-~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~ 88 (289)
++.+ ++..| ....|.+ .+++++++|.++|++||+++|+||+|.+++.+|..+.. +. .+....+.
T Consensus 207 ~~aa-vi~Epi~~~~G~~~~~~~~l~~l~~lc~~~g~llI~DEv~tG~gr~G~~~~~--~~-----------~gv~pDi~ 272 (433)
T PRK08117 207 EVAA-VIIEPVLGEGGYIVPPKSFLKKLREICDRHGILLIFDEVQTGFGRTGEWFAA--QT-----------FGVVPDIM 272 (433)
T ss_pred cEEE-EEECCeeCCCCCccCCHHHHHHHHHHHHHcCCEEEEecchhccCccccchhH--hh-----------cCCCCCEe
Confidence 4545 55556 5556765 47889999999999999999999999987666653221 11 12223367
Q ss_pred cCccccCCCCceEEEEEecCHHHHHHHHhc--cccCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 044773 89 SLSKDLGLPGFRVGAIYSNDDTVVAAATKM--SSFGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEK 166 (289)
Q Consensus 89 s~sK~~g~~G~r~G~i~~~~~~~~~~~~~~--~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 166 (289)
||||.+| +|+++|++++++ .+.+.+... ...+..|++.+.++.+.|+.... ....++++++.+++.+.|++
T Consensus 273 t~sK~lg-~G~pigav~~~~-~i~~~~~~~~~~~T~~~np~~~aaa~a~L~~l~~-----~~l~~~~~~~g~~l~~~L~~ 345 (433)
T PRK08117 273 TIAKGIA-SGLPLSAVVASK-ELMEQWPLGSHGTTFGGNPVACAAALATLEVIKE-----EKLLDNANEMGAYALERLEV 345 (433)
T ss_pred ehhhhcc-CCCcceeEEEcH-HHHhhccCCCCCCCCCcCHHHHHHHHHHHHHHHh-----ccHHHHHHHHHHHHHHHHHH
Confidence 9999999 899999999964 444433221 12233688888888888774321 12334445555555555554
Q ss_pred c----CCceecCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEEe-cCCHHHHHHHH
Q 044773 167 A----GISCLKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFA-NMSEDTLKLSM 241 (289)
Q Consensus 167 ~----g~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ris~~-~~~~e~l~~~l 241 (289)
+ ++.......|.++++.+..............+...++ ++||.+.+... ....+||+++ .++++++++++
T Consensus 346 l~~~~~~~~~vrg~Gl~~gi~~~~~~~~~~~~~~~~~~~~l~-~~Gv~~~~~g~----~~~~lRl~p~~~~t~~~i~~~~ 420 (433)
T PRK08117 346 LKEKHPVIGDVRGIGLMIGIEIVDPDGEPDGDAVEKILDKCL-EKGLLFYLCGN----AGNVLRMIPPLTVTKEEIDEGL 420 (433)
T ss_pred HHhcCCceeeeecCCcEEEEEEecCCCCcchHHHHHHHHHHH-HCCCEEeecCC----CCCEEEEeCCccCCHHHHHHHH
Confidence 3 3222233445666777754321111112234555555 67998876321 2468999973 47999999999
Q ss_pred HHHHHHHHHH
Q 044773 242 QRLKAFVDSI 251 (289)
Q Consensus 242 ~~l~~~l~~~ 251 (289)
++|.+++++.
T Consensus 421 ~~l~~~l~~~ 430 (433)
T PRK08117 421 DILDEALTEY 430 (433)
T ss_pred HHHHHHHHHH
Confidence 9999998765
No 183
>PLN03227 serine palmitoyltransferase-like protein; Provisional
Probab=99.74 E-value=4.3e-16 Score=142.03 Aligned_cols=226 Identities=14% Similarity=0.099 Sum_probs=142.1
Q ss_pred CCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEec
Q 044773 10 LKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVYS 89 (289)
Q Consensus 10 ~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~s 89 (289)
+++++|++.+|+||+|.+.+ +++|.++|+++|+++|+||+|. +...|.......+...- . ...+.++++.|
T Consensus 137 ~~t~~vi~E~v~~~~G~i~~---l~~i~~l~~~~g~~livDe~~~-~g~~g~~G~g~~~~~g~---~--p~~~~Div~~s 207 (392)
T PLN03227 137 DQRRFLVVEGLYKNTGTLAP---LKELVALKEEFHYRLILDESFS-FGTLGKSGRGSLEHAGL---K--PMVHAEIVTFS 207 (392)
T ss_pred CCcEEEEEcCCcCCCCcccC---HHHHHHHHHHcCCEEEEECccc-ccccCCCCCcHHHHcCC---C--CCCCceEEEee
Confidence 36788899989999999999 8899999999999999999997 43334432334443210 0 02355788999
Q ss_pred CccccCCCCceEEEEEecCHHHHHHHHhc---cccCC-CChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044773 90 LSKDLGLPGFRVGAIYSNDDTVVAAATKM---SSFGL-VSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLE 165 (289)
Q Consensus 90 ~sK~~g~~G~r~G~i~~~~~~~~~~~~~~---~~~~~-~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 165 (289)
+||.+|..| |++++++ .+.+.+... ..++. .++..+.++...+.... . ..++.+.++++.+++.+.|+
T Consensus 208 lsk~~g~~g---g~v~~~~-~~~~~~~~~~~~~~~~~~~~p~~~~aa~~al~~~~--~--~~~~~~~l~~~~~~l~~~L~ 279 (392)
T PLN03227 208 LENAFGSVG---GMTVGSE-EVVDHQRLSGSGYCFSASAPPFLAKADATATAGEL--A--GPQLLNRLHDSIANLYSTLT 279 (392)
T ss_pred chhhhhccC---cEEecCH-HHHHHHHHhCcCccccCCCCHHHHHHHHHHHHHHh--c--CHHHHHHHHHHHHHHHHHHH
Confidence 999987556 8888854 444444322 12221 22444444444443211 1 24566778888899999997
Q ss_pred hcCCce----------ecCCceEEEEEecCccccCCCh---hhHHHHHHHHHHhcCeEEeCCCC-----CCCCCCCeEEE
Q 044773 166 KAGISC----------LKSNAGLFCWVDMRHLLSSNTF---EAEMELWKKIVYDVKLNISPGSS-----CHCTEPGWFRV 227 (289)
Q Consensus 166 ~~g~~~----------~~~~~g~~~~i~~~~~~~~~~~---~~~~~~~~~ll~~~gi~v~pg~~-----f~~~~~~~~Ri 227 (289)
+.++.. .....|.++.+.+.+....... ....+++..++ ++|+.+.+... +...++..+|+
T Consensus 280 ~~~~~~~~~~rg~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~-~~Gi~~~~~~~~~~~~~~~~P~~~iR~ 358 (392)
T PLN03227 280 NSSHPYALKLRNRLVITSDPISPIIYLRLSDQEATRRTDETLILDQIAHHSL-SEGVAVVSTGGHVKKFLQLVPPPCLRV 358 (392)
T ss_pred hcCCccccccccccccCCCCCCCEEEEEeCCHHHhhhhhhhhHHHHHHHHHH-HCCCEEEecccccCCcCCCCCCceEEE
Confidence 654321 1112244555666442111000 00125666665 66999875321 12234678999
Q ss_pred EEe-cCCHHHHHHHHHHHHHHHHHHHH
Q 044773 228 CFA-NMSEDTLKLSMQRLKAFVDSITT 253 (289)
Q Consensus 228 s~~-~~~~e~l~~~l~~l~~~l~~~~~ 253 (289)
++. .+++||++++++.|++++++..+
T Consensus 359 ~~~~~~t~eei~~~~~~l~~~~~~~~~ 385 (392)
T PLN03227 359 VANASHTREDIDKLLTVLGEAVEAILC 385 (392)
T ss_pred EecCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 994 48999999999999999988753
No 184
>TIGR01885 Orn_aminotrans ornithine aminotransferase. This model describes the final step in the biosynthesis of ornithine from glutamate via the non-acetylated pathway. Ornithine amino transferase takes L-glutamate 5-semialdehyde and makes it into ornithine, which is used in the urea cycle, as well as in the biosynthesis of arginine. This model includes low-GC bacteria and eukaryotic species. The genes from two species are annotated as putative acetylornithine aminotransferases - one from Porphyromonas gingivalis, and the other from Staphylococcus aureus. After homology searching using BLAST it was determined that these two sequences were most closely related to ornithine aminotransferases. This model's seed includes one characterized hit, from Bacillus subtilis.
Probab=99.73 E-value=3e-16 Score=143.68 Aligned_cols=217 Identities=17% Similarity=0.151 Sum_probs=142.3
Q ss_pred hHHHhhhC-CCccEEEEeCCCCCCccCCCH-HHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCC
Q 044773 2 YQLAQKRH-LKVKGVLVTNPSNPLGTTMSR-NELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTE 79 (289)
Q Consensus 2 l~~~~~~~-~~~~~i~l~~p~NPtG~~~~~-~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d 79 (289)
+++++... +++.+|++..+++++|.+.+. +.+++|.++|++|++++|+||+|.+++++|..+ .. +...
T Consensus 176 le~~l~~~~~~~~avi~E~v~~~~G~~~~~~~~l~~l~~l~~~~~~lli~DEv~~g~g~~G~~~-~~-~~~~-------- 245 (401)
T TIGR01885 176 LEEALEDHGPNVCAFIVEPIQGEAGVVVPDDGYLKKVRELCTKHNVLLIADEIQTGLGRTGKLL-CV-DHEN-------- 245 (401)
T ss_pred HHHHHHhcCCCEEEEEEeCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCccchhh-HH-hhcC--------
Confidence 45556443 356676766669999998864 479999999999999999999998776555421 11 1111
Q ss_pred CCCceEEEecCccccCCCCceEEEEEecCHHHHHHHHhc--cccCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHH
Q 044773 80 VWNRVHIVYSLSKDLGLPGFRVGAIYSNDDTVVAAATKM--SSFGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRH 157 (289)
Q Consensus 80 ~~~~~i~i~s~sK~~g~~G~r~G~i~~~~~~~~~~~~~~--~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 157 (289)
. ..+ +.++||.++.+++|+|+++++ +.+.+.+... ...+..+++.+.++.++|+.. .+ ....++.++..
T Consensus 246 ~-~~d--i~~~gK~l~~g~~~ig~v~~~-~~i~~~~~~~~~~~t~~~~p~~~~aa~a~L~~i---~~--~~l~~~~~~~~ 316 (401)
T TIGR01885 246 V-KPD--IVLLGKALSGGVYPVSAVLAD-DDVMLTIKPGEHGSTYGGNPLACAVAVAALEVL---EE--EKLAENAEKLG 316 (401)
T ss_pred C-CCC--EEEeeccccCCCCCcEEEEEc-HHHHhhccCCCCCCCCCCCHHHHHHHHHHHHHH---Hh--ccHHHHHHHHH
Confidence 1 111 235789998555899999995 4555544331 222335778888777777543 21 12345666778
Q ss_pred HHHHHHHHhcCCce---ecCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEEe-cCC
Q 044773 158 RKLVSGLEKAGISC---LKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFA-NMS 233 (289)
Q Consensus 158 ~~l~~~l~~~g~~~---~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ris~~-~~~ 233 (289)
+++.+.|++++..+ ..+.|.++. +.+...... ....+++..|. ++||.+.|+. +..+||++. .++
T Consensus 317 ~~~~~~L~~l~~~~~~~~~g~g~~~~-i~~~~~~~~---~~~~~l~~~l~-~~Gv~v~~~~------~~~lRi~p~l~~t 385 (401)
T TIGR01885 317 EIFRDQLKKLPKPIITEVRGRGLLNA-IVIDESKTG---RTAWDLCLKLK-EKGLLAKPTH------GNIIRLAPPLVIT 385 (401)
T ss_pred HHHHHHHHhccCCceeEEeecCeeEE-EEeccCcch---hHHHHHHHHHH-hCCEEEEecC------CCEEEEeCCccCC
Confidence 88999998874332 234554444 444332110 12356777776 6699998742 468999984 379
Q ss_pred HHHHHHHHHHHHHHH
Q 044773 234 EDTLKLSMQRLKAFV 248 (289)
Q Consensus 234 ~e~l~~~l~~l~~~l 248 (289)
++++++++++|.+++
T Consensus 386 ~~~i~~~l~~l~~~l 400 (401)
T TIGR01885 386 EEQLDEGLEIIKKVI 400 (401)
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999999998875
No 185
>PRK05937 8-amino-7-oxononanoate synthase; Provisional
Probab=99.73 E-value=3.3e-16 Score=141.92 Aligned_cols=216 Identities=15% Similarity=0.161 Sum_probs=128.2
Q ss_pred hHHHhhhC----CCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhcccccc
Q 044773 2 YQLAQKRH----LKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCEN 77 (289)
Q Consensus 2 l~~~~~~~----~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (289)
++++++.. +++.+|++++++|++|.+.+ +++|.++|+++|+++++|++|+...++ ...........
T Consensus 130 l~~~l~~~~~~~~~~~~v~v~~v~s~~G~i~p---l~eI~~l~~~~~~~livDea~~~G~~g-~~g~g~~~~~~------ 199 (370)
T PRK05937 130 LESLLESCRQRSFGRIFIFVCSVYSFKGTLAP---LEQIIALSKKYHAHLIVDEAHAMGIFG-DDGKGFCHSLG------ 199 (370)
T ss_pred HHHHHHhhhccCCCcEEEEEecCCCCCCCccC---HHHHHHHHHHcCCEEEEECCccccccC-CCCCchHHhhC------
Confidence 45555432 23557778999999999999 899999999999999999999843232 22111111100
Q ss_pred CCCCCceEEEecCccccCCCCceEEEEEecCHHHHHHHHhcccc---CCCChHHHHHHHHHhCCchHHHHHHHHHHHHHH
Q 044773 78 TEVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDTVVAAATKMSSF---GLVSSQTQYLLSALLSDKKFAQNYISENKKRLK 154 (289)
Q Consensus 78 ~d~~~~~i~i~s~sK~~g~~G~r~G~i~~~~~~~~~~~~~~~~~---~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~ 154 (289)
..+.++.+.||||.+|..| +.+++.++...........+ ...+++...++..+++. +.+.....+++++
T Consensus 200 --~~~~~~~~~tlsK~~g~~G---~~vl~~~~~~~~~~~~~~~~~~s~~~~~~~~~a~~aal~~---l~~~~~~~~~~l~ 271 (370)
T PRK05937 200 --YENFYAVLVTYSKALGSMG---AALLSSSEVKQDLMLNSPPLRYSTGLPPHLLISIQVAYDF---LSQEGELARKQLF 271 (370)
T ss_pred --CCCCcEEEEechhhhhcCc---eEEEcCHHHHHHHHHhCCCCeecCCCCHHHHHHHHHHHHH---HHhCcHHHHHHHH
Confidence 1123467899999999667 44555443333333222222 12344544444344432 2222344556777
Q ss_pred HHHHHHHHHHHhcCCceecCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEEec-CC
Q 044773 155 QRHRKLVSGLEKAGISCLKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFAN-MS 233 (289)
Q Consensus 155 ~~~~~l~~~l~~~g~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ris~~~-~~ 233 (289)
+.++++.+.|...+ + + ....+.++.. +...+...| .++||.+... +. +..+.+|+++.. ++
T Consensus 272 ~l~~~l~~~l~~~~-----~-~-~~~~i~~~~~-------~~~~~~~~L-~~~gi~v~~~--~~-~~~~~iRis~~~~~t 333 (370)
T PRK05937 272 RLKEYFAQKFSSAA-----P-G-CVQPIFLPGI-------SEQELYSKL-VETGIRVGVV--CF-PTGPFLRVNLHAFNT 333 (370)
T ss_pred HHHHHHHHhcCCCC-----C-C-CEEEEEeCCh-------hHHHHHHHH-HHCCeeEEee--CC-CCCCEEEEEcCCCCC
Confidence 77777777765321 1 1 1111223321 113455555 5779988632 22 234689999964 79
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 044773 234 EDTLKLSMQRLKAFVDSITT 253 (289)
Q Consensus 234 ~e~l~~~l~~l~~~l~~~~~ 253 (289)
++|++.+++.|++++++..+
T Consensus 334 ~edid~l~~~L~~~~~~~~~ 353 (370)
T PRK05937 334 EDEVDILVSVLATYLEKYQK 353 (370)
T ss_pred HHHHHHHHHHHHHHHHHhCC
Confidence 99999999999999887654
No 186
>PRK09331 Sep-tRNA:Cys-tRNA synthetase; Provisional
Probab=99.73 E-value=5.7e-16 Score=141.15 Aligned_cols=215 Identities=13% Similarity=0.098 Sum_probs=132.2
Q ss_pred CCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEec
Q 044773 10 LKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVYS 89 (289)
Q Consensus 10 ~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~s 89 (289)
+++++|++++|+||||.+.+ +++|.++|+++|+++++|++|+. |..+.+..++ +.+++++|
T Consensus 157 ~~~~lV~l~~~~~~tG~~~~---l~~I~~la~~~g~~livD~a~~~----g~~~~~~~~~------------g~D~~~~s 217 (387)
T PRK09331 157 KPPALALLTHVDGNYGNLAD---AKKVAKVAHEYGIPFLLNGAYTV----GRMPVDGKKL------------GADFIVGS 217 (387)
T ss_pred CCCEEEEEECCCCCCccccc---HHHHHHHHHHcCCEEEEECCccc----CCcCCCHHHc------------CCCEEEee
Confidence 57899999999999999887 99999999999999999999983 2222232222 45688999
Q ss_pred CccccCCCCceEEEEEecCHHHHHHHHhccccC------CCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHH
Q 044773 90 LSKDLGLPGFRVGAIYSNDDTVVAAATKMSSFG------LVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSG 163 (289)
Q Consensus 90 ~sK~~g~~G~r~G~i~~~~~~~~~~~~~~~~~~------~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~ 163 (289)
++|+++ .+.++||++++++.+.........+. ..+...+..+..++.....+.+..+ ..+...++.+++++.
T Consensus 218 ~~K~l~-~~~~~G~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aal~~~~~~~~-~~~~~~~~~~~l~~~ 295 (387)
T PRK09331 218 GHKSMA-ASAPSGVLATTEEYADKVFRTSRKFGVKEVELLGCTLRGAPLVTLMASFPHVVERVK-RWDEEVKKARWFVDE 295 (387)
T ss_pred Cccccc-CCCCEEEEEECHHHHhhcccccCCCcccceeeeceecCchHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence 999998 56689999996544433222211110 0111111112222222122133333 334456677889999
Q ss_pred HHhc-CCceec--CCceEEEEEecCcccc--CCChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEEecCCHHHHH
Q 044773 164 LEKA-GISCLK--SNAGLFCWVDMRHLLS--SNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLK 238 (289)
Q Consensus 164 l~~~-g~~~~~--~~~g~~~~i~~~~~~~--~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ris~~~~~~e~l~ 238 (289)
|.++ |+++.. +....+..++.+.... ........++...|. ++||...+. .....+|+....+++++++
T Consensus 296 L~~l~g~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~L~-~~gI~~~~~-----~~~~i~ri~~~g~t~~di~ 369 (387)
T PRK09331 296 LEKIEGFKQLGEKPRNHDLMKFETPSFDEIAKKHKRRGFFLYEELK-KRGIHGIKP-----GATKEFKLSTYGLTWEQVE 369 (387)
T ss_pred HhcCCCEEEeccCcCcCCeEEEeCCchhHHhhhccccchhHHHHHH-HcCceEEcc-----CCceEEEEEeccCCHHHHH
Confidence 9998 888773 2223344455442100 000011234666665 669985432 1234577777336999999
Q ss_pred HHHHHHHHHHHHH
Q 044773 239 LSMQRLKAFVDSI 251 (289)
Q Consensus 239 ~~l~~l~~~l~~~ 251 (289)
.+++.|++++++.
T Consensus 370 ~l~~aL~~i~~~~ 382 (387)
T PRK09331 370 YVADAFKEIAEKY 382 (387)
T ss_pred HHHHHHHHHHHhc
Confidence 9999999887753
No 187
>PRK07504 O-succinylhomoserine sulfhydrylase; Reviewed
Probab=99.73 E-value=8.6e-16 Score=140.19 Aligned_cols=133 Identities=14% Similarity=0.230 Sum_probs=89.7
Q ss_pred CCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEec
Q 044773 10 LKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVYS 89 (289)
Q Consensus 10 ~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~s 89 (289)
+++|+|+++||+||||.+++ +++|.++|+++|+++|+|++|....+. ...++ +.++++.|
T Consensus 149 ~~tklV~lesp~NptG~v~d---l~~I~~la~~~gi~lvvD~a~a~~~~~-----~~~~~------------gaDivv~S 208 (398)
T PRK07504 149 PNTKVFFLESPTNPTLEVID---IAAVAKIANQAGAKLVVDNVFATPLFQ-----KPLEL------------GAHIVVYS 208 (398)
T ss_pred cCceEEEEECCCCCCcEecC---HHHHHHHHHHcCCEEEEECCccccccC-----Cchhh------------CCCEEEee
Confidence 57999999999999999999 899999999999999999999853221 11122 44688999
Q ss_pred CccccCCCCceEE-EEEecCHHHHHHHHhccccCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 044773 90 LSKDLGLPGFRVG-AIYSNDDTVVAAATKMSSFGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEKA 167 (289)
Q Consensus 90 ~sK~~g~~G~r~G-~i~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 167 (289)
+||.++.+|.++| +++++++.+.+.+....... .+.+.+..++.++....- +..+.++..++.+.+.+.|+++
T Consensus 209 ~sK~l~g~g~~~GG~vv~~~~~i~~~~~~~~~~~-g~~~s~~~A~~~l~~L~t----l~~R~~~~~~na~~la~~L~~~ 282 (398)
T PRK07504 209 ATKHIDGQGRCLGGVVLSDKAWIEEHLQDYFRHT-GPSLSPFNAWTLLKGLET----LPVRVRQQTESAAAIADFLAGH 282 (398)
T ss_pred ccccccCCccceEEEEEeCcHHHHHHHHHHHHHh-CCCCCHHHHHHHHhccch----HHHHHHHHHHHHHHHHHHHHcC
Confidence 9999988899996 55665555544333322111 223333444444443222 3444455567777788888776
No 188
>PRK06767 methionine gamma-lyase; Provisional
Probab=99.72 E-value=5.9e-16 Score=140.86 Aligned_cols=203 Identities=15% Similarity=0.202 Sum_probs=130.7
Q ss_pred CCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEec
Q 044773 10 LKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVYS 89 (289)
Q Consensus 10 ~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~s 89 (289)
+++++|++++|+||||.+++ +++|.++|+++|+++|+|++|....+ .. ++ ..+.++++.|
T Consensus 145 ~~tklV~lesp~NptG~v~d---l~~I~~la~~~g~~vivD~a~a~~~~-~~---pl-------------~~g~Div~~S 204 (386)
T PRK06767 145 PNTKLIFVETPINPTMKLID---LKQVIRVAKRNGLLVIVDNTFCSPYL-QR---PL-------------ELGCDAVVHS 204 (386)
T ss_pred cCceEEEEeCCCCCCceecC---HHHHHHHHHHcCCEEEEECCCccccc-CC---ch-------------hcCCcEEEec
Confidence 57899999999999999999 88999999999999999999974322 11 11 1133578899
Q ss_pred CccccCCCCceE-EEEEecCHHHHHHHHhccc-cC-CCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 044773 90 LSKDLGLPGFRV-GAIYSNDDTVVAAATKMSS-FG-LVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEK 166 (289)
Q Consensus 90 ~sK~~g~~G~r~-G~i~~~~~~~~~~~~~~~~-~~-~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 166 (289)
+||.++.+|.++ ||++++++.+......... .+ ..+++.+.++...++. +..+.+..+++.+.+.+.|++
T Consensus 205 ~sK~l~g~g~~~gG~v~~~~~~i~~~~~~~~~~~g~~~~~~~a~l~~~~L~t-------l~~r~~~~~~~a~~la~~L~~ 277 (386)
T PRK06767 205 ATKYIGGHGDVVAGVTICKTRALAEKIRPMRKDIGGIMAPFDAWLLLRGLKT-------LAVRMDRHCDNAEKIVSFLKN 277 (386)
T ss_pred CcceecCCCCceeEEEEeChHHHHHHHHHHHHHhCCCCCHHHHHHHHcCCCc-------HHHHHHHHHHHHHHHHHHHHc
Confidence 999998788885 8999976655554433322 22 2344443333333332 344556678888889999998
Q ss_pred c-CCce-ec-----------CCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCC--------------
Q 044773 167 A-GISC-LK-----------SNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHC-------------- 219 (289)
Q Consensus 167 ~-g~~~-~~-----------~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~-------------- 219 (289)
+ +++. .. ..+|++ .+++... ..+..++...| +..++.+.-|.....
T Consensus 278 ~p~v~~v~~p~~~~~~~~~~~~gg~v-sf~l~~~-----~~~~~~f~~~l-~~~~~~~s~G~~~sl~~~p~~~~~~~~~~ 350 (386)
T PRK06767 278 HDAVEGVWYPEGELASRQMKRGGGVI-SFSIKGG-----KEETQAFINDL-HFITIAVSLGDTETLIQHPATMTHAAIPA 350 (386)
T ss_pred CCCccEEECCCcHHHHHhCCCCCceE-EEEEcCC-----HHHHHHHHHhC-CccEEecCCCCcCccccCCCccccccCCH
Confidence 8 6652 21 234443 3555421 12234555555 355555443332221
Q ss_pred -------CCCCeEEEEEecCCHHHHHHHHHHHHHHHH
Q 044773 220 -------TEPGWFRVCFANMSEDTLKLSMQRLKAFVD 249 (289)
Q Consensus 220 -------~~~~~~Ris~~~~~~e~l~~~l~~l~~~l~ 249 (289)
..++.+|||++. |+.+.+++.|.++++
T Consensus 351 ~~~~~~gi~~~l~R~svGl---E~~~dl~~dl~~al~ 384 (386)
T PRK06767 351 ELRQEMGIYDNLIRLSVGL---ESWEDIVSDLEQALK 384 (386)
T ss_pred HHHHhcCCCCCeEEEEecc---CCHHHHHHHHHHHHh
Confidence 124689999996 677788888877775
No 189
>TIGR01977 am_tr_V_EF2568 cysteine desulfurase family protein. This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family. Related families contain members active as cysteine desulfurases, selenocysteine lyases, or both. The members of this family form a distinct clade and all are shorter at the N-terminus. The function of this subfamily is unknown.
Probab=99.72 E-value=5.5e-16 Score=140.58 Aligned_cols=208 Identities=15% Similarity=0.141 Sum_probs=137.0
Q ss_pred CCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEec
Q 044773 10 LKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVYS 89 (289)
Q Consensus 10 ~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~s 89 (289)
++++++++++|+||||.+++ +++|.++|+++|+++|+|++|+.. .....+. ..+.++++.|
T Consensus 136 ~~~~~v~~~~~~n~tG~~~~---~~~i~~l~~~~~~~livD~a~~~g----~~~~~~~------------~~~~D~~~~s 196 (376)
T TIGR01977 136 TNTKLIVVSHASNVTGTILP---IEEIGELAQENGIFFILDAAQTAG----VIPIDMT------------ELAIDMLAFT 196 (376)
T ss_pred CCCeEEEEECCCCCccccCC---HHHHHHHHHHcCCEEEEEhhhccC----ccCCCch------------hcCCCEEEec
Confidence 46899999999999999999 788999999999999999999742 1112221 2355688999
Q ss_pred CccccCCCCceEEEEEecCHHHHHHHHhc------------------cccCCCChHHHHHHHHHhCCchHHHHHHHHHHH
Q 044773 90 LSKDLGLPGFRVGAIYSNDDTVVAAATKM------------------SSFGLVSSQTQYLLSALLSDKKFAQNYISENKK 151 (289)
Q Consensus 90 ~sK~~g~~G~r~G~i~~~~~~~~~~~~~~------------------~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~ 151 (289)
++|.++.|. .+|.++.++.......... ...++.+.....++..+++... +.-.+..++
T Consensus 197 ~~K~l~~p~-g~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~t~~~~~~~a~~~al~~~~--~~g~~~~~~ 273 (376)
T TIGR01977 197 GHKGLLGPQ-GTGGLYIREGIKLKPLKSGGTGSHSALIDQPSELPDRFESGTLNTPGIAGLNAGIKFIE--KIGIANIAK 273 (376)
T ss_pred ccccccCCC-CceEEEEcCCcCcCceecCCCccccccccccccchhhccCCCCCHHHHHHHHHHHHHHH--HhCHHHHHH
Confidence 999986442 3677766444311111000 0012233444444444443211 122456677
Q ss_pred HHHHHHHHHHHHHHhc-CCceecCC----ceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCC-------
Q 044773 152 RLKQRHRKLVSGLEKA-GISCLKSN----AGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHC------- 219 (289)
Q Consensus 152 ~~~~~~~~l~~~l~~~-g~~~~~~~----~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~------- 219 (289)
+.++..+++.+.|.+. |+++..+. .+..+++.++.. +..++...|.+++||.+.+|..+..
T Consensus 274 ~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~~-------~~~~~~~~L~~~~gi~v~~g~~~~~~~~~~~g 346 (376)
T TIGR01977 274 KECMLTEKLLNGLREINKVKIYGPADPANRVGVVSFTVEGI-------DSEEVADILDEKFDIATRTGLHCAPLAHKTIG 346 (376)
T ss_pred HHHHHHHHHHHHHhcCCCeEEeCCCCccccCCeEEEEECCC-------CHHHHHHHHhccCCEEEEcccccchHHHHHhC
Confidence 7888888899999876 67665431 133555666432 1235777776566999999887642
Q ss_pred -CCCCeEEEEEec-CCHHHHHHHHHHHHH
Q 044773 220 -TEPGWFRVCFAN-MSEDTLKLSMQRLKA 246 (289)
Q Consensus 220 -~~~~~~Ris~~~-~~~e~l~~~l~~l~~ 246 (289)
...+.+|+++.. ++++|++.++++|++
T Consensus 347 ~~~~~~iRis~~~~~t~~dv~~~~~~l~~ 375 (376)
T TIGR01977 347 TFATGTIRLSLGYFNTEEEIEKLLEALSE 375 (376)
T ss_pred CCCCCeEEEecCCCCCHHHHHHHHHHHhh
Confidence 245799999954 899999999999975
No 190
>PRK07582 cystathionine gamma-lyase; Validated
Probab=99.71 E-value=2.3e-15 Score=135.96 Aligned_cols=199 Identities=16% Similarity=0.164 Sum_probs=127.6
Q ss_pred CCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEec
Q 044773 10 LKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVYS 89 (289)
Q Consensus 10 ~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~s 89 (289)
+++++|++++|+||||.+.+ +++|+++|+++|+++|+|++|... + +..+. ++ +.+++++|
T Consensus 131 ~~t~lV~le~p~NPtg~v~d---i~~I~~~a~~~g~~lvVD~t~~~~-~-~~~p~---~~------------g~Divv~S 190 (366)
T PRK07582 131 AGADLVLAETPSNPGLDVCD---LAALAAAAHAAGALLVVDNTTATP-L-GQRPL---EL------------GADLVVAS 190 (366)
T ss_pred cCceEEEEECCCCCCCCccC---HHHHHHHHHHcCCEEEEECCCCCc-c-ccCch---hc------------CCcEEEec
Confidence 57899999999999998877 999999999999999999999631 1 22111 12 23478899
Q ss_pred CccccC-CCCceEEEEEecCHHHHHHHHhccccC--CCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 044773 90 LSKDLG-LPGFRVGAIYSNDDTVVAAATKMSSFG--LVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEK 166 (289)
Q Consensus 90 ~sK~~g-~~G~r~G~i~~~~~~~~~~~~~~~~~~--~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 166 (289)
+||+++ .+|+++||++++++.+.+.+.....+. ..++.....+...++. +..+.++..++...+.+.|++
T Consensus 191 ~sK~l~G~~g~~~G~v~~~~~~l~~~l~~~~~~~g~~~~~~~a~l~~r~l~t-------l~~R~~~~~~na~~la~~L~~ 263 (366)
T PRK07582 191 DTKALTGHSDLLLGYVAGRDPELMAAVERWRLLAGAIPGPFEAWLAHRSLGT-------LGLRFARQCANALAVAELLAG 263 (366)
T ss_pred ccccccCCCCeeEEEEEcCcHHHHHHHHHHHHHhCCCCCHHHHHHHHhcccc-------HHHHHHHHHHHHHHHHHHHHh
Confidence 999994 568999999987666666555443332 2455665555555554 233335555777788888887
Q ss_pred c-CCc-ee------cC-----------CceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCC--------
Q 044773 167 A-GIS-CL------KS-----------NAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHC-------- 219 (289)
Q Consensus 167 ~-g~~-~~------~~-----------~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~-------- 219 (289)
+ .+. +. .| -||+ +.+++.. . +.+...+++.++... +..+|.
T Consensus 264 ~p~v~~v~yp~l~~~p~~~~~~~~~~~~gg~-~s~~~~~---~-------~~~~~~~~~l~~~~~-~~s~G~~~sl~~~~ 331 (366)
T PRK07582 264 HPAVRGVRYPGLPGDPAHEVAARQMRRFGGL-VSFELAD---A-------AAAERFVAASRLVVA-ATSFGGVHTSADRR 331 (366)
T ss_pred CCCccEEECCCCCCCccHHHHHhhCCCCcce-EEEEeCC---H-------HHHHHHHHhCCccee-cccCCCccchhhhH
Confidence 6 332 11 12 2443 3456642 1 233445556666554 333332
Q ss_pred ------CCCCeEEEEEecCCHHHHHHHHHHHHHHHHH
Q 044773 220 ------TEPGWFRVCFANMSEDTLKLSMQRLKAFVDS 250 (289)
Q Consensus 220 ------~~~~~~Ris~~~~~~e~l~~~l~~l~~~l~~ 250 (289)
.+++.||+|++. |+.+++++.|.++++.
T Consensus 332 ~~~~~~~~~~liR~svGl---E~~~dli~dl~~al~~ 365 (366)
T PRK07582 332 ARWGDAVPEGFVRLSCGI---EDTDDLVADLERALDA 365 (366)
T ss_pred HHcCCCCCCCeEEEEecc---CCHHHHHHHHHHHHhh
Confidence 124689999996 5556666666666653
No 191
>PRK13580 serine hydroxymethyltransferase; Provisional
Probab=99.71 E-value=1.7e-15 Score=138.90 Aligned_cols=224 Identities=13% Similarity=0.085 Sum_probs=142.3
Q ss_pred hHHHhhhCCCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCC
Q 044773 2 YQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVW 81 (289)
Q Consensus 2 l~~~~~~~~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 81 (289)
+++++.. .++.|+++..+|-++ ..+ +++|.++|+++|+++++|++|....+.+..... ...+ ..
T Consensus 212 l~~~~~~--~~plvii~g~S~~~~-~~d---l~~i~eia~~~gA~L~VD~AH~~Gligg~~~~~--~~~~--------~~ 275 (493)
T PRK13580 212 IAALARE--FKPLILVAGYSAYPR-RVN---FAKLREIADEVGAVLMVDMAHFAGLVAGKVFTG--DEDP--------VP 275 (493)
T ss_pred HHHHHhh--cCCEEEEeCccccCC-CcC---HHHHHHHHHHcCCEEEEECchhhceeccccchh--hcCC--------CC
Confidence 3455543 466778888877644 667 999999999999999999999855443222110 0000 11
Q ss_pred CceEEEecCcccc-CCCCceEEEEEecCHHHHHHHHhccccCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHH
Q 044773 82 NRVHIVYSLSKDL-GLPGFRVGAIYSNDDTVVAAATKMSSFGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKL 160 (289)
Q Consensus 82 ~~~i~i~s~sK~~-g~~G~r~G~i~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l 160 (289)
+.+++++|++|++ |..| |+++++ +.+.+.+....++...+++...+++.++.-...+....++.++++.++.++|
T Consensus 276 ~~D~vtgT~hKaL~GP~G---G~I~~~-~~l~~~L~~a~P~i~gg~l~p~iAA~avAl~e~~~~ef~~y~~~l~~Na~~L 351 (493)
T PRK13580 276 HADIVTTTTHKTLRGPRG---GLVLAK-KEYADAVDKGCPLVLGGPLPHVMAAKAVALAEARTPEFQKYAQQVVDNARAL 351 (493)
T ss_pred CCcEEEeCChhhccCCCe---EEEEec-HHHHHHHhhCCCcccCCCccHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHH
Confidence 4558899999999 5334 999995 4455555444444333332223222222211111122356788999999999
Q ss_pred HHHHHhcCCceecC-CceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCC-CC---CCeEEEEEec----
Q 044773 161 VSGLEKAGISCLKS-NAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHC-TE---PGWFRVCFAN---- 231 (289)
Q Consensus 161 ~~~l~~~g~~~~~~-~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~-~~---~~~~Ris~~~---- 231 (289)
.+.|.+.|+.+... ..+..+++.+.+.... .+.+...+++.||.+.+-..... .+ +..+||++..
T Consensus 352 a~~L~~~G~~vv~ggTdshIV~V~lg~~~~~------g~~a~~~L~e~GI~vn~i~~Ptvp~g~~~~srLRIg~~A~ttr 425 (493)
T PRK13580 352 AEGFLKRGARLVTGGTDNHLVLIDVTSFGLT------GRQAESALLDAGIVTNRNSIPSDPNGAWYTSGIRLGTPALTTL 425 (493)
T ss_pred HHHHHhcCCCccCCCCCCCEEEEEeCCHHHH------HHHHHHHHHHCCeEEccccCCCCCCCCCCCceEEeccchhhhc
Confidence 99999999987532 2345666777653211 23455556788999875543332 22 5689999843
Q ss_pred -CCHHHHHHHHHHHHHHHHHH
Q 044773 232 -MSEDTLKLSMQRLKAFVDSI 251 (289)
Q Consensus 232 -~~~e~l~~~l~~l~~~l~~~ 251 (289)
+++++++++++.|.++++..
T Consensus 426 g~teedi~~iad~l~~~l~~~ 446 (493)
T PRK13580 426 GMGSDEMDEVAELIVKVLSNT 446 (493)
T ss_pred CCCHHHHHHHHHHHHHHHHhh
Confidence 35899999999999988754
No 192
>PRK00011 glyA serine hydroxymethyltransferase; Reviewed
Probab=99.71 E-value=5.3e-15 Score=136.06 Aligned_cols=219 Identities=13% Similarity=0.121 Sum_probs=137.3
Q ss_pred hHHHhhhCCCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCC-ccCCCCccChhhhhhccccccCCC
Q 044773 2 YQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGT-VFSSPGFVSIMEILKDRNCENTEV 80 (289)
Q Consensus 2 l~~~~~~~~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~-~~~~~~~~~~~~~~~~~~~~~~d~ 80 (289)
++++++.+ ++++|++++++|| ...+ +++|.++|+++|+++|+|++|... ...+.....+ .
T Consensus 157 l~~~i~~~-~~k~v~~~~~~~~--~~~~---~~~I~~la~~~~~~livD~a~~~g~~~~g~~~~~~-------------~ 217 (416)
T PRK00011 157 VEKLALEH-KPKLIIAGASAYS--RPID---FKRFREIADEVGAYLMVDMAHIAGLVAAGVHPSPV-------------P 217 (416)
T ss_pred HHHHHHhc-CCCEEEECCCcCC--CccC---HHHHHHHHHHcCCEEEEECcchhcccccCccCCCC-------------C
Confidence 34555443 6889888766554 4445 899999999999999999998632 1112111111 1
Q ss_pred CCceEEEecCccccCCCCceEEEEEecCHHHHHHHHhccccC-CCCh--HHHHHHHHHhCCchHHHHHHHHHHHHHHHHH
Q 044773 81 WNRVHIVYSLSKDLGLPGFRVGAIYSNDDTVVAAATKMSSFG-LVSS--QTQYLLSALLSDKKFAQNYISENKKRLKQRH 157 (289)
Q Consensus 81 ~~~~i~i~s~sK~~g~~G~r~G~i~~~~~~~~~~~~~~~~~~-~~~~--~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 157 (289)
..+++++|+||++ +|.|.||++++++.+.+.+......+ ..++ ..+.++..++.. .+.+.+.+..+++++++
T Consensus 218 -~~di~~~S~~K~l--~g~~gg~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~aa~~~a~~~--~~~~~~~~~~~~~~~~~ 292 (416)
T PRK00011 218 -HADVVTTTTHKTL--RGPRGGLILTNDEELAKKINSAVFPGIQGGPLMHVIAAKAVAFKE--ALEPEFKEYAQQVVKNA 292 (416)
T ss_pred -CCcEEEecCCcCC--CCCCceEEEeCCHHHHHHHHHHhCccccCCccHHHHHHHHHHHHH--HHhhhHHHHHHHHHHHH
Confidence 2347899999987 56778999997666666655443222 1222 222222222221 11344677888899999
Q ss_pred HHHHHHHHhcCCceec-CCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCC-CC---CCCCCCeEEEEEe--
Q 044773 158 RKLVSGLEKAGISCLK-SNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGS-SC---HCTEPGWFRVCFA-- 230 (289)
Q Consensus 158 ~~l~~~l~~~g~~~~~-~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~-~f---~~~~~~~~Ris~~-- 230 (289)
+++.+.|++.|+++.. ...++++|+.++... .+..++...| +++||.+..+. .+ .+..+..+|++..
T Consensus 293 ~~l~~~L~~~g~~~~~~~~~~~~~~i~~~~~~-----~~~~~~~~~L-~~~GI~v~~~~~p~~~~~~~~~~~~Ri~~~~~ 366 (416)
T PRK00011 293 KALAEALAERGFRVVSGGTDNHLVLVDLRSKG-----LTGKEAEAAL-EEANITVNKNAVPFDPRSPFVTSGIRIGTPAI 366 (416)
T ss_pred HHHHHHHHhCCCeeeecCCCCeEEEEeCcccC-----CCHHHHHHHH-HHcCcEEccCcCCCCCCCCCCCCceEecCHHH
Confidence 9999999988887653 122478888885321 1113455544 57899997432 11 1122456899651
Q ss_pred ---cCCHHHHHHHHHHHHHHHHH
Q 044773 231 ---NMSEDTLKLSMQRLKAFVDS 250 (289)
Q Consensus 231 ---~~~~e~l~~~l~~l~~~l~~ 250 (289)
.+++++++.+++.|++++..
T Consensus 367 ~~~~~t~~di~~l~~~l~~~~~~ 389 (416)
T PRK00011 367 TTRGFKEAEMKEIAELIADVLDN 389 (416)
T ss_pred hhcCcCHHHHHHHHHHHHHHHhc
Confidence 24689999999999887664
No 193
>PRK13520 L-tyrosine decarboxylase; Provisional
Probab=99.71 E-value=4.6e-15 Score=134.26 Aligned_cols=215 Identities=15% Similarity=0.135 Sum_probs=141.1
Q ss_pred hHHHhhhCCCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCC
Q 044773 2 YQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVW 81 (289)
Q Consensus 2 l~~~~~~~~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 81 (289)
+++++. +++++|++++++||||.+.+ +++|.++|+++|+++++|++|.++............. ...
T Consensus 144 l~~~i~--~~~~~vi~~~~~~~tG~~~~---l~~I~~l~~~~g~~livD~a~~~~~~~~~~~~~~~~~---------~~~ 209 (371)
T PRK13520 144 VEDLID--DNTIGIVGIAGTTELGQVDP---IPELSKIALENGIFLHVDAAFGGFVIPFLDDPPNFDF---------SLP 209 (371)
T ss_pred HHHHHh--hCCEEEEEEcCCcCCcccCC---HHHHHHHHHHcCCCEEEEecchhHHHHhhcCCCCccc---------cCC
Confidence 344444 34677788888999999998 9999999999999999999998653210000000011 012
Q ss_pred CceEEEecCccccCCCCceEEEEEecCHHHHHHHHhccccC----------CCChHHHHHHHHHhCCchHHHHHHHHHHH
Q 044773 82 NRVHIVYSLSKDLGLPGFRVGAIYSNDDTVVAAATKMSSFG----------LVSSQTQYLLSALLSDKKFAQNYISENKK 151 (289)
Q Consensus 82 ~~~i~i~s~sK~~g~~G~r~G~i~~~~~~~~~~~~~~~~~~----------~~~~~~q~~~~~~l~~~~~~~~~~~~~~~ 151 (289)
+...+..|.+|. +.+|.++|++++.++.+.+.+.....+. +.+.....++..+++... ....++..+
T Consensus 210 ~vd~~~~s~~K~-~~a~~~~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~gt~~~~~~~~~~~al~~l~--~~g~~~~~~ 286 (371)
T PRK13520 210 GVDSITIDPHKM-GLAPIPAGGILFRDESYLDALAVDTPYLTSKKQATLTGTRSGAGVAATYAVMKYLG--REGYRKVVE 286 (371)
T ss_pred CCceEEECCccc-cCccCCceEEEEcCHHHHHhhcccCccccCCCCcceEeeccChHHHHHHHHHhhhc--HhHHHHHHH
Confidence 344566788885 4477899999886665555443222111 112234444555554321 333577788
Q ss_pred HHHHHHHHHHHHHHhcCCc-eecCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEEe
Q 044773 152 RLKQRHRKLVSGLEKAGIS-CLKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFA 230 (289)
Q Consensus 152 ~~~~~~~~l~~~l~~~g~~-~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ris~~ 230 (289)
+..++++++.+.|.+.|++ +..+..+ ++.++++. . .++...|. ++||.+.++. ....+|+++.
T Consensus 287 ~~~~~~~~l~~~L~~~g~~~~~~~~~~-~v~~~~~~---~------~~v~~~L~-~~gi~v~~~~-----~~~~iRis~~ 350 (371)
T PRK13520 287 RCMENTRWLAEELKERGFEPVIEPVLN-IVAFDDPN---P------DEVREKLR-ERGWRVSVTR-----CPEALRIVCM 350 (371)
T ss_pred HHHHHHHHHHHHHHhCCCEEecCCCce-EEEEecCC---H------HHHHHHHH-HCCceeccCC-----CCCEEEEEEE
Confidence 8899999999999988887 5555555 44455541 1 34666666 5599988653 2457999985
Q ss_pred c-CCHHHHHHHHHHHHHHHH
Q 044773 231 N-MSEDTLKLSMQRLKAFVD 249 (289)
Q Consensus 231 ~-~~~e~l~~~l~~l~~~l~ 249 (289)
. +++++++.+++.|+++++
T Consensus 351 ~~~t~edi~~~~~~l~~~~~ 370 (371)
T PRK13520 351 PHVTREHIENFLEDLKEVKK 370 (371)
T ss_pred CCCCHHHHHHHHHHHHHHhh
Confidence 4 689999999999988654
No 194
>PRK09264 diaminobutyrate--2-oxoglutarate aminotransferase; Validated
Probab=99.70 E-value=1.2e-15 Score=140.52 Aligned_cols=209 Identities=14% Similarity=0.123 Sum_probs=129.6
Q ss_pred ccEEEEeCC-CCCCcc-CCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccC-hhhhhhccccccCCCCCceEEEe
Q 044773 12 VKGVLVTNP-SNPLGT-TMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVS-IMEILKDRNCENTEVWNRVHIVY 88 (289)
Q Consensus 12 ~~~i~l~~p-~NPtG~-~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~-~~~~~~~~~~~~~d~~~~~i~i~ 88 (289)
+.+ ++..| ..-.|. +++++.+++|.++|++||+++|+||+|.+++.+|..+.. ...+ ..+ +.
T Consensus 199 ~aa-vi~Epv~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~tG~GrtG~~~~~~~~~v----------~PD----i~ 263 (425)
T PRK09264 199 PAA-VIVETVQGEGGINVASAEWLQRLAKLCRKHDILLIVDDIQAGCGRTGTFFSFERAGI----------TPD----IV 263 (425)
T ss_pred eEE-EEEecccCCCCCcCCCHHHHHHHHHHHHHcCcEEEEechhhCCccccHHHHHhhcCC----------CCC----EE
Confidence 445 44556 665676 678999999999999999999999999987666543211 1111 112 55
Q ss_pred cCccccCCCCceEEEEEecCHHHHHHHHh--ccccCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 044773 89 SLSKDLGLPGFRVGAIYSNDDTVVAAATK--MSSFGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEK 166 (289)
Q Consensus 89 s~sK~~g~~G~r~G~i~~~~~~~~~~~~~--~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 166 (289)
++||.+|..|+++|+++++++ +. .+.. ....+..|++...+..+.+... + .+ ....++++++.+++.+.|++
T Consensus 264 t~~K~l~~~G~pigav~~~~~-i~-~~~~~~~~~T~~gnp~~~aaa~a~l~~~-~-~~--~~l~~~~~~~g~~l~~~l~~ 337 (425)
T PRK09264 264 TLSKSISGYGLPMALVLIKPE-LD-VWKPGEHNGTFRGNNLAFVTATAALEEY-W-SD--DAFEKEVKAKGELVRERLEE 337 (425)
T ss_pred EeccccCCCccceEEEEEchh-hh-ccCCCccCCCCCCCHHHHHHHHHHHHHH-H-hh--hHHHHHHHHHHHHHHHHHHH
Confidence 789999944999999999754 33 2221 1122336666665554555211 0 00 12333344444444444433
Q ss_pred ----cC-CceecCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEEe-cCCHHHHHHH
Q 044773 167 ----AG-ISCLKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFA-NMSEDTLKLS 240 (289)
Q Consensus 167 ----~g-~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ris~~-~~~~e~l~~~ 240 (289)
.+ +.......|+++++.+.... ....+...++ +.||.+.++..+ ...+|+++. .+++++++++
T Consensus 338 l~~~~~~~~~~vrg~Gl~~~i~l~~~~------~~~~l~~~~~-~~Gv~~~~~~~~----~~~lr~~p~l~~t~~ei~~~ 406 (425)
T PRK09264 338 IAAKYPGLGAEVRGRGMMQGIDFGDGE------LAGKIAAEAF-ENGLIIETSGPE----DEVVKLLPPLTIDEEELEEG 406 (425)
T ss_pred HHHhCCCceecceecccEEEEEecChH------HHHHHHHHHH-HCCCEEeccCCC----CCEEEEeCCCCCCHHHHHHH
Confidence 22 21223345778888886421 1235666665 669999875433 257888875 3699999999
Q ss_pred HHHHHHHHHHHH
Q 044773 241 MQRLKAFVDSIT 252 (289)
Q Consensus 241 l~~l~~~l~~~~ 252 (289)
+++|.+++++..
T Consensus 407 ~~~l~~~l~~~~ 418 (425)
T PRK09264 407 LDILEEAVAEVL 418 (425)
T ss_pred HHHHHHHHHHHH
Confidence 999999998753
No 195
>PRK06058 4-aminobutyrate aminotransferase; Provisional
Probab=99.70 E-value=3.1e-15 Score=138.42 Aligned_cols=213 Identities=12% Similarity=0.114 Sum_probs=135.8
Q ss_pred CccEEEEeCCCCCC-ccC-CCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEe
Q 044773 11 KVKGVLVTNPSNPL-GTT-MSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVY 88 (289)
Q Consensus 11 ~~~~i~l~~p~NPt-G~~-~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~ 88 (289)
++.+ ++..|-+.. |.. .+.+.+++|.++|++||+++|.||++.+++++|..+.. +.. +...-+.
T Consensus 219 ~iAa-vi~EPi~g~gG~~~p~~~yl~~lr~lc~~~gillI~DEV~tGfgRtG~~fa~--~~~-----------gv~PDiv 284 (443)
T PRK06058 219 NLAA-VIIEPIQGEGGFIVPAEGFLPALLEWCRENGVVFIADEVQTGFARTGAWFAC--EHE-----------GIVPDLI 284 (443)
T ss_pred ceEE-EEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcChhhhHH--Hhc-----------CCCCCEE
Confidence 5555 556774444 544 46889999999999999999999999988666654311 221 1112244
Q ss_pred cCccccCCCCceEEEEEecCHHHHHHHHhc--cccCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 044773 89 SLSKDLGLPGFRVGAIYSNDDTVVAAATKM--SSFGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEK 166 (289)
Q Consensus 89 s~sK~~g~~G~r~G~i~~~~~~~~~~~~~~--~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 166 (289)
+++|.+| +|+++|++++++ .+.+.+... ...+..|++.+.++.+.|+... + ....++++++.+++.+.|++
T Consensus 285 ~~gK~l~-~G~Pi~av~~~~-~i~~~~~~~~~~~T~~gnpl~~aaa~a~L~~~~---~--~~l~~~~~~~g~~l~~~L~~ 357 (443)
T PRK06058 285 TTAKGIA-GGLPLSAVTGRA-EIMDAPHPGGLGGTYGGNPVACAAALAAIETIE---E--DDLVARARQIEALMTDRLRA 357 (443)
T ss_pred EEccccc-CCCccEEEEEcH-HHHhhccCCCCCCCCCCCHHHHHHHHHHHHHHH---H--cCHHHHHHHHHHHHHHHHHH
Confidence 6689999 899999999954 455544322 2234478899888888876422 1 13344555555666666655
Q ss_pred c----CCc-eecCCceEEEEEecCcc-ccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEEec-CCHHHHHH
Q 044773 167 A----GIS-CLKSNAGLFCWVDMRHL-LSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFAN-MSEDTLKL 239 (289)
Q Consensus 167 ~----g~~-~~~~~~g~~~~i~~~~~-~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ris~~~-~~~e~l~~ 239 (289)
+ ++. -..+.|.+ ..+.+... .......-...+...++ ++||.+.|+..++ .++|+.++. ++++++++
T Consensus 358 l~~~~~~i~~vrg~G~~-~~i~~~~~~~~~~~~~~~~~l~~~~~-~~Gv~~~~~~~~~----~~lr~~Ppl~~t~~~i~~ 431 (443)
T PRK06058 358 LAAEDDRIGDVRGRGAM-IAIELVKPGTTEPDAELTKALAAAAH-AAGVIVLTCGTYG----NVIRLLPPLVIGDELLRE 431 (443)
T ss_pred HHhhCCcEEeeeccceE-EEEEEecCCCCCCcHHHHHHHHHHHH-HCCeEEeccCCCC----CEEEEECCCccCHHHHHH
Confidence 3 221 13455544 44555321 11111111234555555 6799999876554 489998754 79999999
Q ss_pred HHHHHHHHHHH
Q 044773 240 SMQRLKAFVDS 250 (289)
Q Consensus 240 ~l~~l~~~l~~ 250 (289)
+++++.+++++
T Consensus 432 ~~~~l~~~l~~ 442 (443)
T PRK06058 432 GLDVLEAALAD 442 (443)
T ss_pred HHHHHHHHHHh
Confidence 99999998864
No 196
>PF04864 Alliinase_C: Allinase; InterPro: IPR006948 Allicin is a thiosulphinate that gives rise to dithiines, allyl sulphides and ajoenes, the three groups of active compounds in Allium species. Allicin is synthesised from sulphoxide cysteine derivatives by alliinase, whose C-S lyase activity cleaves C(beta)-S(gamma) bonds. It is thought that this enzyme forms part of a primitive plant defence system [].; GO: 0016846 carbon-sulfur lyase activity; PDB: 1LK9_B 2HOX_C 2HOR_A 3BWO_D 3BWN_B.
Probab=99.70 E-value=1.5e-16 Score=136.83 Aligned_cols=202 Identities=18% Similarity=0.235 Sum_probs=133.3
Q ss_pred CccEE-EEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEec
Q 044773 11 KVKGV-LVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVYS 89 (289)
Q Consensus 11 ~~~~i-~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~s 89 (289)
....| ++++||||-|.+ .+.++ +..+..+|.|-||....|+.-.. ..+.++.+.|
T Consensus 136 ~~~~IElVTSPNNPDG~l-----r~~V~---~g~~~k~I~D~AYYWPhyTpI~~----------------~aD~DiMLFT 191 (363)
T PF04864_consen 136 PSPYIELVTSPNNPDGQL-----REAVL---NGSSGKVIHDLAYYWPHYTPITA----------------PADHDIMLFT 191 (363)
T ss_dssp CCGEEEEEESS-TTT-----------SS---TTTEEEEEEE-TT-STTTS---S-----------------B--SEEEEE
T ss_pred CCCeEEEEeCCCCCcccc-----cchhc---CCCCcceeeeeeeecccccccCC----------------CCCCceEEEE
Confidence 34566 999999999997 55554 45567789999998544432221 3367799999
Q ss_pred CccccCCCCceEEEEEecCHHHHHHHHhcccc--CCCChHHHHHHHHHhCCchH---HH----HHHHHHHHHHHHHHHHH
Q 044773 90 LSKDLGLPGFRVGAIYSNDDTVVAAATKMSSF--GLVSSQTQYLLSALLSDKKF---AQ----NYISENKKRLKQRHRKL 160 (289)
Q Consensus 90 ~sK~~g~~G~r~G~i~~~~~~~~~~~~~~~~~--~~~~~~~q~~~~~~l~~~~~---~~----~~~~~~~~~~~~~~~~l 160 (289)
+||.-|..|.|+||.+++++.+.+.+..+... ..++.=.|.-++.+|+..-. .. +...--++.+++|.+.|
T Consensus 192 ~SK~TGHAGSR~GWAlVKD~~Va~kM~~y~~lnTiGvS~dsQLRa~kiLk~v~~~~~~~~~~~~~F~f~~~~M~~RW~~L 271 (363)
T PF04864_consen 192 LSKLTGHAGSRFGWALVKDEEVAKKMTKYMELNTIGVSRDSQLRALKILKVVLDGYGTEKGTEDIFHFGYSTMRERWEKL 271 (363)
T ss_dssp HHHHCS-GGG-EEEEEES-HHHHHHHHHHHHHHCSS--HHHHHHHHHHHHHHHHHCCHHTTTTSHHHHHHHHHHHHHHHH
T ss_pred EecccCccccccceeeecCHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHhcccCCCCccchHHHHHHHHHHHHHHH
Confidence 99999999999999999999998877665433 23677788877777763210 01 34666778899999999
Q ss_pred HHHHHhcC-Cc--------------eecCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeE
Q 044773 161 VSGLEKAG-IS--------------CLKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWF 225 (289)
Q Consensus 161 ~~~l~~~g-~~--------------~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~ 225 (289)
.+.+..-+ +. +..| +.-|.|+++....+. -|...+++.||..+.|..||. ++.++
T Consensus 272 ~~~~~~S~rFSLq~~~~~yC~ff~~~~~p-sPafAWlkCe~eed~--------DC~~~l~~~~I~tr~G~~fga-~~ryV 341 (363)
T PF04864_consen 272 RAAVSASKRFSLQKFSPQYCNFFKRVREP-SPAFAWLKCEREEDE--------DCYAVLREAKIITRSGVLFGA-DSRYV 341 (363)
T ss_dssp HHHHCCSSSEEE---SCEEETTTTCEEE----SEEEEEESSCGGS--------SHHHHHHCTTEEEEEGGGGTS--TTEE
T ss_pred HHHHHhcCceecCcCCchhccccccccCC-CCCeEEEecCCcccc--------cHHHHHHhCCcccCCCCccCC-CCCeE
Confidence 99997642 11 1222 235899999865332 466677799999999999995 67899
Q ss_pred EEEEecCCHHHHHHHHHHHHHH
Q 044773 226 RVCFANMSEDTLKLSMQRLKAF 247 (289)
Q Consensus 226 Ris~~~~~~e~l~~~l~~l~~~ 247 (289)
|||+-. ++++++.++++|..+
T Consensus 342 RlSml~-~~d~Fd~l~~rL~~l 362 (363)
T PF04864_consen 342 RLSMLK-RDDDFDQLLERLSKL 362 (363)
T ss_dssp EEESSS--HHHHHHHHHHHHCC
T ss_pred EEeccC-CHHHHHHHHHHHHhh
Confidence 999985 899999999999753
No 197
>cd00614 CGS_like CGS_like: Cystathionine gamma-synthase is a PLP dependent enzyme and catalyzes the committed step of methionine biosynthesis. This pathway is unique to microorganisms and plants, rendering the enzyme an attractive target for the development of antimicrobials and herbicides. This subgroup also includes cystathionine gamma-lyases (CGL), O-acetylhomoserine sulfhydrylases and O-acetylhomoserine thiol lyases. CGL's are very similar to CGS's. Members of this group are widely distributed among all three forms of life.
Probab=99.69 E-value=3.3e-15 Score=135.30 Aligned_cols=132 Identities=18% Similarity=0.245 Sum_probs=93.8
Q ss_pred CCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEec
Q 044773 10 LKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVYS 89 (289)
Q Consensus 10 ~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~s 89 (289)
+++++|++++|+||+|.+.+ +++|.++|+++|+++|+|++|....+ . ... ..+.++++.|
T Consensus 124 ~~~~~v~~e~~~np~g~~~d---l~~i~~la~~~g~~livD~t~~~~~~-~----~~~------------~~g~Divv~S 183 (369)
T cd00614 124 PETKLVYVESPTNPTLKVVD---IEAIAELAHEHGALLVVDNTFATPYL-Q----RPL------------ELGADIVVHS 183 (369)
T ss_pred CCCeEEEEECCCCCCCeecC---HHHHHHHHHHcCCEEEEECCCcchhc-C----Chh------------hhCCcEEEec
Confidence 46899999999999999998 89999999999999999999975322 1 111 1245688999
Q ss_pred CccccCCCC-ceEEEEEecCHHHHHHHHhccc-cC-CCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 044773 90 LSKDLGLPG-FRVGAIYSNDDTVVAAATKMSS-FG-LVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEK 166 (289)
Q Consensus 90 ~sK~~g~~G-~r~G~i~~~~~~~~~~~~~~~~-~~-~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 166 (289)
+||.+|.+| .+.||++++++.+.+.+..... ++ ..++....++...++. +..+.+...++.+.+.+.|++
T Consensus 184 ~tK~l~g~~~~~gG~v~~~~~~l~~~l~~~~~~~g~~~~p~~a~~~l~~l~t-------l~~r~~~~~~na~~la~~L~~ 256 (369)
T cd00614 184 ATKYIGGHSDVIAGVVVGSGEALIQRLRFLRLALGTILSPFDAWLLLRGLKT-------LPLRMERHSENALKVAEFLEK 256 (369)
T ss_pred cceeccCCCCceEEEEEeCcHHHHHHHHHHHHhhCCCCCHHHHHHHHcCCCC-------HHHHHHHHHHHHHHHHHHHHc
Confidence 999997565 8899999977455555544332 22 2444444444333432 344556677788889999988
Q ss_pred cC
Q 044773 167 AG 168 (289)
Q Consensus 167 ~g 168 (289)
++
T Consensus 257 ~~ 258 (369)
T cd00614 257 HP 258 (369)
T ss_pred CC
Confidence 73
No 198
>PRK08133 O-succinylhomoserine sulfhydrylase; Validated
Probab=99.69 E-value=6.1e-15 Score=134.31 Aligned_cols=132 Identities=16% Similarity=0.198 Sum_probs=88.4
Q ss_pred CCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEec
Q 044773 10 LKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVYS 89 (289)
Q Consensus 10 ~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~s 89 (289)
+++|+|++++|+||+|.+.+ +++|+++|+++|+++|+|++|..... .. + ..+ +.++++.|
T Consensus 145 ~~tklV~ie~p~NptG~v~d---l~~I~~la~~~gi~livD~t~~~~~~-~~---p-l~~------------g~Divv~S 204 (390)
T PRK08133 145 PNTKLFFLETPSNPLTELAD---IAALAEIAHAAGALLVVDNCFCTPAL-QQ---P-LKL------------GADVVIHS 204 (390)
T ss_pred cCCeEEEEECCCCCCCCcCC---HHHHHHHHHHcCCEEEEECCCccccc-CC---c-hhh------------CCcEEEee
Confidence 57899999999999999998 89999999999999999999964322 11 1 111 33578999
Q ss_pred CccccCCCCceE-EEEEecCHHHHHHHHhccccCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 044773 90 LSKDLGLPGFRV-GAIYSNDDTVVAAATKMSSFGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEKA 167 (289)
Q Consensus 90 ~sK~~g~~G~r~-G~i~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 167 (289)
+||+++.+|.++ ||++++++.+..........+ ..+.+..+..++... +.+..+.+...++.+.+.+.|+++
T Consensus 205 ~sK~~~g~g~~~GG~vv~~~~~~~~~~~~~~~~g--~~~~~~~a~~~l~gl----~tl~~R~~~~~~~a~~la~~L~~~ 277 (390)
T PRK08133 205 ATKYLDGQGRVLGGAVVGSKELMEEVFGFLRTAG--PTLSPFNAWVFLKGL----ETLSLRMEAHSANALALAEWLEAH 277 (390)
T ss_pred cceeecCCcceEeEEEEcCHHHHHHHHHHHHHhC--CCCCHHHHHHHHccc----chHHHHHHHHHHHHHHHHHHHHhC
Confidence 999998789888 556665444333332222222 222233333333332 234555566667888889999876
No 199
>PRK08045 cystathionine gamma-synthase; Provisional
Probab=99.69 E-value=1.2e-14 Score=132.09 Aligned_cols=131 Identities=19% Similarity=0.207 Sum_probs=97.3
Q ss_pred CCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEec
Q 044773 10 LKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVYS 89 (289)
Q Consensus 10 ~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~s 89 (289)
+++++|++++|+||||.+++ +++|.++|+++|+++|+|++|..... ..++ ++ +.++++.|
T Consensus 136 ~~tklV~l~sP~NPtG~v~d---i~~I~~ia~~~g~~vivDeay~~~~~----~~pl-~~------------gaDivv~S 195 (386)
T PRK08045 136 EKPKLVLVESPSNPLLRVVD---IAKICHLAREAGAVSVVDNTFLSPAL----QNPL-AL------------GADLVLHS 195 (386)
T ss_pred cCCeEEEEECCCCCCCEecC---HHHHHHHHHHcCCEEEEECCCCcccc----CCch-hh------------CCCEEEee
Confidence 47899999999999999999 88889999999999999999975322 1111 12 23488999
Q ss_pred CccccC-CCCceEEEEEecCHHHHHHHHhcccc--CCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 044773 90 LSKDLG-LPGFRVGAIYSNDDTVVAAATKMSSF--GLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEK 166 (289)
Q Consensus 90 ~sK~~g-~~G~r~G~i~~~~~~~~~~~~~~~~~--~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 166 (289)
++|+++ .+++..|+++++++.+.+.+...... ...+++.+..+...++. +..+.++..++...+.+.|++
T Consensus 196 ~tK~l~G~~d~~~G~vi~~~~~~~~~l~~~~~~~g~~~~p~~~~l~~rgl~t-------l~~R~~~~~~na~~la~~L~~ 268 (386)
T PRK08045 196 CTKYLNGHSDVVAGVVIAKDPDVVTELAWWANNIGVTGGAFDSYLLLRGLRT-------LVPRMELAQRNAQAIVKYLQT 268 (386)
T ss_pred cceeccCCCCceeEEEEeCcHHHHHHHHHHHHhcCCCCCHHHHHHHHhhhcc-------HHHHHHHHHHHHHHHHHHHHc
Confidence 999995 56788999988666665544433222 23667777777777775 456667777888888888887
Q ss_pred c
Q 044773 167 A 167 (289)
Q Consensus 167 ~ 167 (289)
+
T Consensus 269 ~ 269 (386)
T PRK08045 269 Q 269 (386)
T ss_pred C
Confidence 7
No 200
>COG0520 csdA Selenocysteine lyase/Cysteine desulfurase [Posttranslational modification, protein turnover, chaperones]
Probab=99.69 E-value=6e-15 Score=134.17 Aligned_cols=211 Identities=15% Similarity=0.171 Sum_probs=150.2
Q ss_pred hCCCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEE
Q 044773 8 RHLKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIV 87 (289)
Q Consensus 8 ~~~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i 87 (289)
.++++|+|.+++.+|.||.+.+ +++|+++|+++|+++++|-+++. ++.+.++.++ +.++++
T Consensus 159 i~~~Tklvais~vSn~tG~~~p---v~~I~~la~~~ga~v~VDaaq~~----~h~~idv~~l------------~~Df~a 219 (405)
T COG0520 159 ITPKTKLVALSHVSNVTGTVNP---VKEIAELAHEHGALVLVDAAQAA----GHLPIDVQEL------------GCDFLA 219 (405)
T ss_pred cCCCceEEEEECccccccccch---HHHHHHHHHHcCCEEEEECcccc----CccCCCchhc------------CCCEEE
Confidence 4468999999999999999999 99999999999999999999984 4555565544 777999
Q ss_pred ecCccccCCCCceEEEEEecCHHHHHHHH------------h--------ccc---cCCCChHHHHHHHHHhCCchHHHH
Q 044773 88 YSLSKDLGLPGFRVGAIYSNDDTVVAAAT------------K--------MSS---FGLVSSQTQYLLSALLSDKKFAQN 144 (289)
Q Consensus 88 ~s~sK~~g~~G~r~G~i~~~~~~~~~~~~------------~--------~~~---~~~~~~~~q~~~~~~l~~~~~~~~ 144 (289)
.|.+|.++.| ..+|.+.++++.+.+... . ... .++++......+.++++-. .+
T Consensus 220 fsgHKwl~gP-~GiGvLy~r~~~l~~l~P~~~gg~~~~~~~~~~~~~~~~~p~rfe~gTpn~~~~i~l~aAl~~~---~~ 295 (405)
T COG0520 220 FSGHKWLLGP-TGIGVLYVRKELLEELEPFLGGGGMIEYVSRDEGVTLAELPLRFEAGTPNIAGAIGLAAALDYL---LE 295 (405)
T ss_pred EcccccccCC-CceEEEEEchHHHhhcCCcccCCCceeeecccccccccCcchhhccCCchHHHHHhHHHHHHHH---HH
Confidence 9999955325 349999997666554311 0 000 0112223333444444432 22
Q ss_pred H-HHHHHHHHHHHHHHHHHHHHhc-CCceecCC---ceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCC
Q 044773 145 Y-ISENKKRLKQRHRKLVSGLEKA-GISCLKSN---AGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHC 219 (289)
Q Consensus 145 ~-~~~~~~~~~~~~~~l~~~l~~~-g~~~~~~~---~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~ 219 (289)
. +++..++.++..+++.+.|.++ +++++.+. .+-.+.+.+.... ..+++..|. ++||.++.|..|..
T Consensus 296 ig~~~i~~~e~~L~~~~~~~L~~~~~v~i~g~~~~~r~~~vsF~v~~~~-------~~dv~~~L~-~~gI~vr~g~~ca~ 367 (405)
T COG0520 296 IGMEAIEAHERELTEYLLEGLSELPGVEIYGPPDADRGGIVSFNVKGIH-------PHDVATLLD-EKGIAVRAGHHCAQ 367 (405)
T ss_pred HhHHHHHHHHHHHHHHHHHHHhcCCCeEEecCCcccCceEEEEEeCCCC-------HHHHHHHHH-hCCeEEEecccccc
Confidence 2 5778889999999999999988 78888764 2334445555431 235666665 66899999988864
Q ss_pred C------CCCeEEEEEec-CCHHHHHHHHHHHHHHHH
Q 044773 220 T------EPGWFRVCFAN-MSEDTLKLSMQRLKAFVD 249 (289)
Q Consensus 220 ~------~~~~~Ris~~~-~~~e~l~~~l~~l~~~l~ 249 (289)
. ....+|+|++. ++.+|++.+++.|+++.+
T Consensus 368 p~~~~~~~~~~iR~S~~~YNt~edid~l~~aL~~~~~ 404 (405)
T COG0520 368 PLHRLLGVDATIRASLHLYNTEEDVDRLLEALKKALA 404 (405)
T ss_pred HHHHhcCCCCceEEEEeecCCHHHHHHHHHHHHHHhh
Confidence 2 13459999975 899999999999998764
No 201
>cd06450 DOPA_deC_like DOPA decarboxylase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to DOPA/tyrosine decarboxylase (DDC), histidine decarboxylase (HDC), and glutamate decarboxylase (GDC). DDC is active as a dimer and catalyzes the decarboxylation of tyrosine. GDC catalyzes the decarboxylation of glutamate and HDC catalyzes the decarboxylation of histidine.
Probab=99.68 E-value=4.8e-16 Score=139.33 Aligned_cols=193 Identities=14% Similarity=0.154 Sum_probs=129.4
Q ss_pred CccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEecC
Q 044773 11 KVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVYSL 90 (289)
Q Consensus 11 ~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~s~ 90 (289)
+++++++++|+||||.+.+ +++|.++|+++|+++++|++|....+........ .. ...+.+.+..|+
T Consensus 148 ~~~~v~~~~~~~~tG~~~~---~~~i~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~---~~-------~~~~~d~~~~s~ 214 (345)
T cd06450 148 NPIMVVATAGTTDTGAIDP---LEEIADLAEKYDLWLHVDAAYGGFLLPFPEPRHL---DF-------GIERVDSISVDP 214 (345)
T ss_pred CcEEEEEecccCCCCCCCC---HHHHHHHHHHhCCeEEEechhhHHHhhChhhHHH---hc-------CccccCEEEEch
Confidence 5788899999999999866 9999999999999999999998654322111111 00 012345677899
Q ss_pred ccccCCCCceEEEEEecCHHHHHHHHhccccCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHhc-CC
Q 044773 91 SKDLGLPGFRVGAIYSNDDTVVAAATKMSSFGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEKA-GI 169 (289)
Q Consensus 91 sK~~g~~G~r~G~i~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~ 169 (289)
+|.++ ++.++|+++++ .+.+.++..++.. ..+++..++..++++++.+.|.+. ++
T Consensus 215 ~K~l~-~p~g~g~~~~~------------------~~~~~~~l~~l~~-----~g~~~~~~~~~~~~~~l~~~L~~~~~~ 270 (345)
T cd06450 215 HKYGL-VPLGCSAVLVR------------------ALKLWATLRRFGR-----DGYGEHIDRIVDLAKYLAELIRADPGF 270 (345)
T ss_pred hHhhC-CCcchHHHHHH------------------HHHHHHHHHHHhH-----HHHHHHHHHHHHHHHHHHHHHhcCCCe
Confidence 99876 66788888774 3334444444433 235677788888999999999887 67
Q ss_pred ceec-CCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEEec-C-CHHHHHHHHHHHHH
Q 044773 170 SCLK-SNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFAN-M-SEDTLKLSMQRLKA 246 (289)
Q Consensus 170 ~~~~-~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ris~~~-~-~~e~l~~~l~~l~~ 246 (289)
++.. ++++++. +.++..... . .+..++.+.|. ++|+.+.++..+. .+.++|+++.. + +.++++.+++.|++
T Consensus 271 ~~~~~~~~~iv~-f~~~~~~~~-~-~~~~~i~~~L~-~~g~~~~~~~~~~--~~~~lRis~~~~~~t~~di~~l~~~l~~ 344 (345)
T cd06450 271 ELLGEPNLSLVC-FRLKPSVKL-D-ELNYDLSDRLN-ERGGWHVPATTLG--GPNVLRFVVTNPLTTRDDADALLEDIER 344 (345)
T ss_pred EEecCCceeEEE-EEECCcchh-h-HHHHHHHHHHH-hcCCEEEEeeEEC--CeEEEEEEecCCCCCHHHHHHHHHHHHh
Confidence 6554 5566555 444431000 0 22245777776 5555555444332 45789999964 3 89999999999875
No 202
>PRK06234 methionine gamma-lyase; Provisional
Probab=99.68 E-value=4.2e-15 Score=135.81 Aligned_cols=203 Identities=13% Similarity=0.189 Sum_probs=122.8
Q ss_pred CCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHc--CCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEE
Q 044773 10 LKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEK--NIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIV 87 (289)
Q Consensus 10 ~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~--~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i 87 (289)
+++++|++++|+||||.+.+ +++|.++|+++ ++++|+|++|....+. . . .+. +.++++
T Consensus 148 ~~tklI~iesP~NPtG~v~d---l~~I~~la~~~~~~i~livDea~~~~~~~-~---~-l~~------------g~Divv 207 (400)
T PRK06234 148 ANTKVVYLETPANPTLKVTD---IKAISNIAHENNKECLVFVDNTFCTPYIQ-R---P-LQL------------GADVVV 207 (400)
T ss_pred cCCeEEEEECCCCCCCCcCC---HHHHHHHHHhcCCCCEEEEECCCCchhcC-C---c-hhh------------CCcEEE
Confidence 57899999999999999998 89999999997 9999999999854331 1 1 111 455899
Q ss_pred ecCccccCCCCceE-EEEEecCHHHHHHHHhc--ccc--CCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHH
Q 044773 88 YSLSKDLGLPGFRV-GAIYSNDDTVVAAATKM--SSF--GLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVS 162 (289)
Q Consensus 88 ~s~sK~~g~~G~r~-G~i~~~~~~~~~~~~~~--~~~--~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~ 162 (289)
.|+||.++.+|.++ ||++++++ +.+.++.. ... ...++.....+...++. +..+.++..++.+++.+
T Consensus 208 ~S~sK~l~g~g~~~gG~v~~~~~-~~~~l~~~~~~~~~g~~l~p~~a~l~~~~l~t-------l~~r~~~~~~na~~~a~ 279 (400)
T PRK06234 208 HSATKYLNGHGDVIAGFVVGKEE-FINQVKLFGIKDMTGSVIGPFEAFLIIRGMKT-------LQIRMEKHCKNAMKVAK 279 (400)
T ss_pred eeccccccCCCCceeEEEEecHH-HHHHHHHHHHHHhcCCCCCHHHHHHHHhccCc-------HHHHHHHHHHHHHHHHH
Confidence 99999998788765 99999654 44444321 111 22344444444444433 23334445567777777
Q ss_pred HHHhcC-Cc-eec-----------------CCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCC----
Q 044773 163 GLEKAG-IS-CLK-----------------SNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHC---- 219 (289)
Q Consensus 163 ~l~~~g-~~-~~~-----------------~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~---- 219 (289)
.|+++. +. +.- ..|++ +.+++.... ....++...| +-.++.+.-|.....
T Consensus 280 ~L~~~~~V~~V~~p~l~~~~~~~~~~~~~~~~g~l-~s~~l~~~~-----~~~~~f~~~l-~~~~~~~s~G~~~sl~~~p 352 (400)
T PRK06234 280 FLESHPAVEKVYYPGLESFEYYELAKKQMSLPGAM-ISFELKGGV-----EEGKVVMNNV-KLATLAVSLGDAETLIQHP 352 (400)
T ss_pred HHHcCCCeeEEECCCCCCCCcHHHHHHhCCCCCce-EEEEecCcH-----HHHHHHHHhC-CcceEeccCCCCCceecCC
Confidence 887652 11 111 12343 446665311 1123344443 233333322222210
Q ss_pred -----------------CCCCeEEEEEecCCHHHHHHHHHHHHHHHHH
Q 044773 220 -----------------TEPGWFRVCFANMSEDTLKLSMQRLKAFVDS 250 (289)
Q Consensus 220 -----------------~~~~~~Ris~~~~~~e~l~~~l~~l~~~l~~ 250 (289)
..++.+|||++. |+.+.+++.|+++++.
T Consensus 353 ~~~~~~~~~~~~~~~~gi~~~l~R~svGl---E~~~dl~~dl~~al~~ 397 (400)
T PRK06234 353 ASMTHSPYTAEERKEAGISDGLVRLSVGL---EDVDDIIADLKQALDL 397 (400)
T ss_pred ccCCCCCCCHHHHHhcCCCCCeEEEEeCC---CCHHHHHHHHHHHHHH
Confidence 124689999997 6777777777777764
No 203
>COG4992 ArgD Ornithine/acetylornithine aminotransferase [Amino acid transport and metabolism]
Probab=99.68 E-value=4.3e-15 Score=131.24 Aligned_cols=216 Identities=18% Similarity=0.235 Sum_probs=150.9
Q ss_pred hHHHhhhCCCccEEEEeCCCCCCccCC-CHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCC
Q 044773 2 YQLAQKRHLKVKGVLVTNPSNPLGTTM-SRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEV 80 (289)
Q Consensus 2 l~~~~~~~~~~~~i~l~~p~NPtG~~~-~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 80 (289)
++.++.. ++-+|++..-+--.|... +.+.++.+.++|.++|+++|.||++.+++.+|..+.. +.
T Consensus 177 l~~ai~~--~taAvivEPIQGEgGV~~~~~~fl~~lr~lCd~~g~LLI~DEVQtG~GRTGk~fA~-------------e~ 241 (404)
T COG4992 177 LEAAIDE--DTAAVIVEPIQGEGGVIPAPPEFLKALRELCDEHGALLILDEVQTGLGRTGKLFAY-------------EH 241 (404)
T ss_pred HHHHhcc--CeEEEEEecccCCCCCCCCCHHHHHHHHHHHHHhCeEEEEeccccCCCccchHHHH-------------HH
Confidence 4555554 677766664488788776 5568999999999999999999999999888775422 12
Q ss_pred CCceEEEecCccccCCCCceEEEEEecCHHHHHHHH---hccccCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHH
Q 044773 81 WNRVHIVYSLSKDLGLPGFRVGAIYSNDDTVVAAAT---KMSSFGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRH 157 (289)
Q Consensus 81 ~~~~i~i~s~sK~~g~~G~r~G~i~~~~~~~~~~~~---~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 157 (289)
.+....|.+++|.+| .|+++|.++++ +.....+. +.++|+ .|++...+..+.++-... .+..+..+++.
T Consensus 242 ~gV~PDI~tlaK~Lg-GG~PigA~la~-~~~~~~~~~G~HgSTfG-GNpLacAv~~a~l~~l~~-----e~ll~~v~~~g 313 (404)
T COG4992 242 YGVEPDILTLAKALG-GGFPIGAMLAT-EEIASAFTPGDHGSTFG-GNPLACAVALAVLEVLLE-----EGLLENVREKG 313 (404)
T ss_pred hCCCCCEEEeecccc-CCccceeeEEc-hhhhhcCCCCcccCCCC-cCHHHHHHHHHHHHHHcc-----hhHHHHHHHHH
Confidence 244455788999999 88999999996 55454443 334444 899999888777764322 23334455555
Q ss_pred HHHHHHHHhc--CCc-ee-cCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEEec-C
Q 044773 158 RKLVSGLEKA--GIS-CL-KSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFAN-M 232 (289)
Q Consensus 158 ~~l~~~l~~~--g~~-~~-~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ris~~~-~ 232 (289)
++|.+.|+++ .+. +. ...-|+++-+.+...... .++...+. +.|+.+.+.. +..+|+.++. +
T Consensus 314 ~~~~~~L~~l~~~~~~v~~vRG~GLmiGiel~~~~~a------~~~~~~~~-~~gvL~~~a~------~~ViR~~PpL~i 380 (404)
T COG4992 314 EYLLQRLRELKRRYPLVKEVRGRGLMIGIELKEPYRA------RDIVRALR-EEGVLVLPAG------PNVIRFLPPLVI 380 (404)
T ss_pred HHHHHHHHHHhhcCCceeeeecceeEEEEEecCcccH------HHHHHHHH-HCCeEEecCC------CCeEEecCCccC
Confidence 6666666654 221 12 222367777887765312 34666665 7799998743 4589999965 7
Q ss_pred CHHHHHHHHHHHHHHHHHHHH
Q 044773 233 SEDTLKLSMQRLKAFVDSITT 253 (289)
Q Consensus 233 ~~e~l~~~l~~l~~~l~~~~~ 253 (289)
++++++++++++.++++....
T Consensus 381 ~~eei~~~~~~l~~~l~~~~~ 401 (404)
T COG4992 381 TEEEIDEALDALERALAAASA 401 (404)
T ss_pred CHHHHHHHHHHHHHHHHHhhh
Confidence 999999999999999987653
No 204
>cd00613 GDC-P Glycine cleavage system P-protein, alpha- and beta-subunits. This family consists of Glycine cleavage system P-proteins EC:1.4.4.2 from bacterial, mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex EC:2.1.2.10 (GDC) also annotated as glycine cleavage system or glycine synthase. GDC consists of four proteins P, H, L and T. The reaction catalysed by this protein is: Glycine + lipoylprotein <= S-aminomethyldihydrolipoylprotein + CO2. Alpha-beta-type dimers associate to form an alpha(2)beta(2) tetramer, where the alpha- and beta-subunits are structurally similar and appear to have arisen by gene duplication and subsequent divergence with a loss of one active site. The members of this CD are widely dispersed among all three forms of cellular life.
Probab=99.68 E-value=3.5e-15 Score=136.42 Aligned_cols=202 Identities=14% Similarity=0.110 Sum_probs=129.1
Q ss_pred CCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEec
Q 044773 10 LKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVYS 89 (289)
Q Consensus 10 ~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~s 89 (289)
+++++|++++|+ |+|.+. +.+++|.++|+++|+++|+|++|.... ..... +..+.+++++|
T Consensus 158 ~~t~~viv~~~~-~~G~~~--~~l~~i~~la~~~g~~livD~~~~~~~----~~~~~------------~~~~~d~~~~s 218 (398)
T cd00613 158 EEVAALMVQYPN-TLGVFE--DLIKEIADIAHSAGALVYVDGDNLNLT----GLKPP------------GEYGADIVVGN 218 (398)
T ss_pred CCeEEEEEECCC-CCceec--chHHHHHHHHHhcCCEEEEEecccccc----CCCCh------------HHcCCCEEEee
Confidence 578999999985 899984 356999999999999999999886421 11111 12256799999
Q ss_pred CccccCCC----CceEEEEEecCHHHHHHHHh------------------------------ccc-cCCCChHH-HHHHH
Q 044773 90 LSKDLGLP----GFRVGAIYSNDDTVVAAATK------------------------------MSS-FGLVSSQT-QYLLS 133 (289)
Q Consensus 90 ~sK~~g~~----G~r~G~i~~~~~~~~~~~~~------------------------------~~~-~~~~~~~~-q~~~~ 133 (289)
++|.+ .| |.+.||++.+++. .+.+.. ... ....++.. +.+.+
T Consensus 219 ~~K~~-~p~g~Ggp~~g~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~e~~~~~~~~~~~~~~~~a~~ 296 (398)
T cd00613 219 LQKTG-VPHGGGGPGAGFFAVKKEL-VRFLPGRLVGVTKDAEGNRAFRLALQTREQHIRREKATSNICTGQALLALMAAM 296 (398)
T ss_pred ccccC-CCCCCCCCceeEEEEhhhh-HhhCCCCeeccccccCCCcceEEecccchhhcccccccccceecHHHHHHHHHH
Confidence 99998 45 7899999996543 332210 000 01112222 22222
Q ss_pred HHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceecCCceEE--EEEecCccccCCChhhHHHHHHHHHHhcCeEE
Q 044773 134 ALLSDKKFAQNYISENKKRLKQRHRKLVSGLEKAGISCLKSNAGLF--CWVDMRHLLSSNTFEAEMELWKKIVYDVKLNI 211 (289)
Q Consensus 134 ~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~g~~--~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v 211 (289)
.+.... ....++.+++++++.+++.+.|++++... .+.+.++ ++++++... . .+..+++..|+ ++||.+
T Consensus 297 ~l~~~~---~~g~~~~~~~~~~~~~~l~~~L~~~~~~~-~~~~~~~~~v~~~~~~~~-~---~~~~~~~~~L~-~~gi~~ 367 (398)
T cd00613 297 YIVYLG---PEGLKEIAERAHLNANYLAKRLKEVGGVL-PFNGPFFHEFVLRLPPLY-G---IRAEDLAKALI-DGGFHA 367 (398)
T ss_pred HHHHhC---HHHHHHHHHHHHHHHHHHHHHHHhcCCcc-cCCCCeeEEEEEEcCCcc-h---HHHHHHHHhhh-hcCccc
Confidence 222211 34467788899999999999999875433 2333333 456655310 0 12356777776 568876
Q ss_pred eCCCCCCCCCCCeEEEEEec-CCHHHHHHHHHHH
Q 044773 212 SPGSSCHCTEPGWFRVCFAN-MSEDTLKLSMQRL 244 (289)
Q Consensus 212 ~pg~~f~~~~~~~~Ris~~~-~~~e~l~~~l~~l 244 (289)
.... +...+.+|+++.. ++++|++++++.|
T Consensus 368 ~~~~---~~~~~~lRis~~~~~t~edid~~~~~L 398 (398)
T cd00613 368 PTMY---LPVDGTLMIEPTETETKEELDALLEAL 398 (398)
T ss_pred cccc---cCCCCeEEEEcCCCCCHHHHHHHHHhC
Confidence 4322 2245789999954 7999999998764
No 205
>PRK07269 cystathionine gamma-synthase; Reviewed
Probab=99.67 E-value=2.8e-15 Score=135.15 Aligned_cols=209 Identities=16% Similarity=0.216 Sum_probs=132.8
Q ss_pred CCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEec
Q 044773 10 LKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVYS 89 (289)
Q Consensus 10 ~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~s 89 (289)
+++|+|++++|+||||.+.+ +++|+++|+++|+++|+|++|....+ .. + ... +-++++.|
T Consensus 135 ~~TklV~lesP~NPtg~~~d---i~~I~~la~~~gi~vvvD~t~~~~~~-~~---p-l~~------------gaDivv~S 194 (364)
T PRK07269 135 EDTDIVYIETPTNPLMVEFD---IEKVAKLAHAKGAKVIVDNTFYSPIY-QR---P-IEL------------GADIVLHS 194 (364)
T ss_pred cCceEEEEECCCCCCCeeeC---HHHHHHHHHHcCCEEEEECCCccccc-CC---c-hhh------------CCcEEEec
Confidence 57999999999999999887 99999999999999999999864322 11 1 112 34488999
Q ss_pred CccccCCCC-ceEEEEEecCHHHHHHHHhcccc-C-CCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 044773 90 LSKDLGLPG-FRVGAIYSNDDTVVAAATKMSSF-G-LVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEK 166 (289)
Q Consensus 90 ~sK~~g~~G-~r~G~i~~~~~~~~~~~~~~~~~-~-~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 166 (289)
++|.++.+| .=.|+++++++.+.+.+...... + ..++.....+...|+. +..+.++..++.+.+.+.|++
T Consensus 195 ~tK~l~g~~d~~gG~v~~~~~~l~~~~~~~~~~~G~~~s~~~a~l~~~~L~t-------L~~r~~~~~~na~~~a~~L~~ 267 (364)
T PRK07269 195 ATKYLSGHNDVLAGVVVTNDLELYEKLFYNLNTTGAVLSPFDSYLLMRGLKT-------LSLRMERSTANAQEVVAFLKK 267 (364)
T ss_pred CceeccCCCcccceEEEeCcHHHHHHHHHHHHHhCCCCCHHHHHHHHcCCCc-------HHHHHHHHHHHHHHHHHHHHh
Confidence 999997433 34588888777666655433322 1 2455555544444543 345555567777778888887
Q ss_pred c-CC-ce-ecCCceEEEEEecCccccCCChhhH---HHHHHHHHHhcCeEEeCCCCCCC-----------CCCCeEEEEE
Q 044773 167 A-GI-SC-LKSNAGLFCWVDMRHLLSSNTFEAE---MELWKKIVYDVKLNISPGSSCHC-----------TEPGWFRVCF 229 (289)
Q Consensus 167 ~-g~-~~-~~~~~g~~~~i~~~~~~~~~~~~~~---~~~~~~ll~~~gi~v~pg~~f~~-----------~~~~~~Ris~ 229 (289)
+ .+ ++ +++.||++.+. +........+.+. ..++..|.....+.+.|+..+.. ..++.+|||+
T Consensus 268 ~p~v~~v~ypg~gg~~sf~-~~~~~~~~~f~~~l~~~~~~~slG~~~sl~~~p~~~~~~~~~~~~r~~~Gi~~~liRlsv 346 (364)
T PRK07269 268 SPAVKEVLYTGKGGMISFK-VADETRIPHILNSLKVFTFAESLGGVESLITYPTTQTHADIPAEVRHSYGLTDDLLRLSI 346 (364)
T ss_pred CCCccEEeCCCcCcEEEEE-ECCHHHHHHHHHhCCcceEccCCCCcCeEeeCCcccccccCCHHHHHhcCCCCCeEEEEe
Confidence 6 33 34 36777766644 3321100001111 11334444455667777654422 1257899999
Q ss_pred ecCCHHHHHHHHHHHHHHHH
Q 044773 230 ANMSEDTLKLSMQRLKAFVD 249 (289)
Q Consensus 230 ~~~~~e~l~~~l~~l~~~l~ 249 (289)
+. |+.+.+++.|.++++
T Consensus 347 Gl---E~~~dli~dl~~al~ 363 (364)
T PRK07269 347 GI---EDARDLIADLKQALE 363 (364)
T ss_pred cc---CCHHHHHHHHHHHhc
Confidence 96 677777777777663
No 206
>PRK06541 hypothetical protein; Provisional
Probab=99.67 E-value=1.1e-14 Score=135.21 Aligned_cols=224 Identities=13% Similarity=0.085 Sum_probs=138.5
Q ss_pred HHHhhh-CCCccEEEEeCC-CCCCccCCC-HHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCC
Q 044773 3 QLAQKR-HLKVKGVLVTNP-SNPLGTTMS-RNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTE 79 (289)
Q Consensus 3 ~~~~~~-~~~~~~i~l~~p-~NPtG~~~~-~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d 79 (289)
++++.. +++..+.++..| ++++|.+.+ .+.+++|.++|+++|+++|+||+|.+++..|..+. .+..
T Consensus 211 ~~~l~~~~~~~~Aavi~EPv~g~~G~~~~~~~yl~~l~~lc~~~g~llI~DEV~tGfGR~G~~~a--~~~~--------- 279 (460)
T PRK06541 211 EEAIEFEGPDTVAAVFLEPVQNAGGCFPPPPGYFERVREICDRYDVLLVSDEVICAFGRLGEMFG--CERF--------- 279 (460)
T ss_pred HHHHHhcCCCCEEEEEECCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCcCchhhh--hhhc---------
Confidence 444443 234455677778 899998765 88999999999999999999999988755554321 1111
Q ss_pred CCCceEEEecCccccCCCCc-eEEEEEecCHHHHHHHHhcc-----ccCCCChHHHHHHHHHhCCchHHHHHHHHHHHHH
Q 044773 80 VWNRVHIVYSLSKDLGLPGF-RVGAIYSNDDTVVAAATKMS-----SFGLVSSQTQYLLSALLSDKKFAQNYISENKKRL 153 (289)
Q Consensus 80 ~~~~~i~i~s~sK~~g~~G~-r~G~i~~~~~~~~~~~~~~~-----~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~ 153 (289)
+...-+.++||.+| +|+ ++|+++++++.......... ..+..|++...++.+.++... + ....+++
T Consensus 280 --gv~PDivt~gK~l~-~G~~pigav~~~~~i~~~~~~~~~~~~~~~T~~gnp~~~aaala~l~~l~---~--~~~~~~~ 351 (460)
T PRK06541 280 --GYVPDIITCAKGIT-SGYSPLGAMIASDRLFEPFLDGPTMFLHGYTFGGHPVSAAVALANLDIFE---R--EGLLDHV 351 (460)
T ss_pred --CCCCCEEEeccccc-CCccceeEEEEcHHHHHHhhcCCCccccCCCCCCCHHHHHHHHHHHHHHH---h--ccHHHHH
Confidence 11111346999998 886 99999996554433322111 122256666555555554321 1 1345667
Q ss_pred HHHHHHHHHHHHhc-CCce---ecCCceEEEEEecCcccc-CCCh----hh---HHHHHHHHHHhcCeEEeCCCCCCCCC
Q 044773 154 KQRHRKLVSGLEKA-GISC---LKSNAGLFCWVDMRHLLS-SNTF----EA---EMELWKKIVYDVKLNISPGSSCHCTE 221 (289)
Q Consensus 154 ~~~~~~l~~~l~~~-g~~~---~~~~~g~~~~i~~~~~~~-~~~~----~~---~~~~~~~ll~~~gi~v~pg~~f~~~~ 221 (289)
+++.++|.+.|+++ ...+ ....| .+..+.+..... ...+ .+ ...+...++ ++||.+.+.. .+
T Consensus 352 ~~~g~~l~~~L~~l~~~~~v~~vrg~G-l~~~ie~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gi~~~~~~----~g 425 (460)
T PRK06541 352 RDNEPAFRATLEKLLDLPIVGDVRGDG-YFYGIELVKDKATKETFTDDESERLLRGFLSPALF-EAGLYCRADD----RG 425 (460)
T ss_pred HHHHHHHHHHHHHhhcCCCeEEEEecc-eEEEEEEecCcccccCCcchhhhhhHHHHHHHHHH-hCCeEEEecC----CC
Confidence 77777777777765 2221 23444 455566643211 0000 00 013455565 6799998731 12
Q ss_pred CCeEEEEEec-CCHHHHHHHHHHHHHHHHHH
Q 044773 222 PGWFRVCFAN-MSEDTLKLSMQRLKAFVDSI 251 (289)
Q Consensus 222 ~~~~Ris~~~-~~~e~l~~~l~~l~~~l~~~ 251 (289)
...+||+++. +++++++++++++.+++++.
T Consensus 426 ~~~lrl~Ppl~~t~~~id~~~~~l~~~l~~~ 456 (460)
T PRK06541 426 DPVVQLAPPLISGQEEFDEIEQILRSVLTEA 456 (460)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHHHHH
Confidence 3679999964 79999999999999998764
No 207
>PRK08249 cystathionine gamma-synthase; Provisional
Probab=99.67 E-value=2e-14 Score=131.18 Aligned_cols=130 Identities=10% Similarity=0.158 Sum_probs=87.9
Q ss_pred CCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEec
Q 044773 10 LKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVYS 89 (289)
Q Consensus 10 ~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~s 89 (289)
+++++|++++|+||||.+++ +++|.++|+++|+++|+|++|..... .. +. .+ +..+++.|
T Consensus 148 ~~tklV~ie~p~NPtg~v~d---l~~I~~la~~~gi~livD~t~a~~~~-~~---~l-~~------------~~Divv~S 207 (398)
T PRK08249 148 KGCDLLYLETPTNPTLKIVD---IERLAAAAKKVGALVVVDNTFATPIN-QN---PL-AL------------GADLVIHS 207 (398)
T ss_pred CCCeEEEEECCCCCCCccCC---HHHHHHHHHHcCCEEEEECCcCcccc-CC---ch-hh------------CCCEEecc
Confidence 46899999999999999999 88899999999999999999985422 11 11 11 33477899
Q ss_pred CccccCCCCceE-EEEEecCHHHHHHHHhccccC--CCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 044773 90 LSKDLGLPGFRV-GAIYSNDDTVVAAATKMSSFG--LVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEK 166 (289)
Q Consensus 90 ~sK~~g~~G~r~-G~i~~~~~~~~~~~~~~~~~~--~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 166 (289)
+||++|.+|.++ |++++ ++.+.+.+....... ..++..+..+.+-++. +..+.++..++.+.+.+.|++
T Consensus 208 ~sK~l~g~~~~~gG~vv~-~~~l~~~l~~~~~~~g~~~s~~~a~l~l~~l~t-------L~~R~~~~~~na~~la~~L~~ 279 (398)
T PRK08249 208 ATKFLSGHADALGGVVCG-SKELMEQVYHYREINGATMDPMSAYLILRGMKT-------LKLRVRQQQESAMALAKYLQT 279 (398)
T ss_pred CceecCCCCCceEEEEEC-CHHHHHHHHHHHHhcCCCCCHHHHHHHHhCcch-------HHHHHHHHHHHHHHHHHHHHc
Confidence 999998667776 55555 555555554433322 2333444433333332 344445566777888888887
Q ss_pred c
Q 044773 167 A 167 (289)
Q Consensus 167 ~ 167 (289)
+
T Consensus 280 ~ 280 (398)
T PRK08249 280 H 280 (398)
T ss_pred C
Confidence 6
No 208
>PRK07810 O-succinylhomoserine sulfhydrylase; Provisional
Probab=99.67 E-value=1.4e-14 Score=132.43 Aligned_cols=131 Identities=16% Similarity=0.301 Sum_probs=91.8
Q ss_pred CCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEec
Q 044773 10 LKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVYS 89 (289)
Q Consensus 10 ~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~s 89 (289)
+++++|++++|+||+|.+.+ +++|.++|+++++++|+|++|....+. . ++ .+ +.++++.|
T Consensus 154 ~~tklV~~esp~Nptg~v~d---l~~I~~la~~~g~~vivD~a~a~~~~~-~---~~-~~------------gaDivv~S 213 (403)
T PRK07810 154 VPTQAVFFETPSNPMQSLVD---IAAVSELAHAAGAKVVLDNVFATPLLQ-R---GL-PL------------GADVVVYS 213 (403)
T ss_pred cCceEEEEECCCCCCCeecC---HHHHHHHHHHcCCEEEEECCCCccccC-C---hh-hc------------CCcEEEcc
Confidence 46899999999999999998 999999999999999999999753221 1 11 11 34688999
Q ss_pred CccccCCCCceE-EEEEecCHHHHHHHHhc-cccC-CCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 044773 90 LSKDLGLPGFRV-GAIYSNDDTVVAAATKM-SSFG-LVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEK 166 (289)
Q Consensus 90 ~sK~~g~~G~r~-G~i~~~~~~~~~~~~~~-~~~~-~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 166 (289)
++|.++..|.++ |+++++++.+...+..+ ...+ ..++..+..+.+.++. +..+.++..++...+.+.|++
T Consensus 214 ~tK~l~g~g~~~gG~v~~~~~~~~~~l~~~~~~~g~~~s~~~a~l~l~~L~t-------l~~R~~~~~~~a~~~a~~L~~ 286 (403)
T PRK07810 214 GTKHIDGQGRVLGGAILGDREYIDGPVQKLMRHTGPALSAFNAWVLLKGLET-------LALRVRHSNASALRIAEFLEG 286 (403)
T ss_pred CCceecCCcCceeEEEEeChHHHHHHHHHHHHHhCCCCCHHHHHHHHhccCc-------HHHHHHHHHHHHHHHHHHHhc
Confidence 999998778887 88888766554434332 2222 3555666655555554 344445556666667777777
Q ss_pred c
Q 044773 167 A 167 (289)
Q Consensus 167 ~ 167 (289)
+
T Consensus 287 ~ 287 (403)
T PRK07810 287 H 287 (403)
T ss_pred C
Confidence 6
No 209
>TIGR02080 O_succ_thio_ly O-succinylhomoserine (thiol)-lyase. This family consists of O-succinylhomoserine (thiol)-lyase, one of three different enzymes designated cystathionine gamma-synthase and involved in methionine biosynthesis. In all three cases, sulfur is added by transsulfuration from Cys to yield cystathionine rather than by a sulfhydrylation step that uses H2S directly and bypasses cystathionine.
Probab=99.67 E-value=1.6e-14 Score=131.12 Aligned_cols=131 Identities=18% Similarity=0.220 Sum_probs=92.6
Q ss_pred CCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEec
Q 044773 10 LKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVYS 89 (289)
Q Consensus 10 ~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~s 89 (289)
+++|+|++++|+||||.+++ +++|.++|+++|+++|+|++|...... .++ .+ +.+++++|
T Consensus 135 ~~tklV~l~~p~NPtG~~~d---l~~I~~la~~~g~~vvvD~a~~~~~~~----~pl-~~------------gaDivv~S 194 (382)
T TIGR02080 135 QKPKLVLIETPSNPLLRVVD---IAKICHLAKAVGAVVVVDNTFLSPALQ----NPL-AL------------GADLVLHS 194 (382)
T ss_pred cCceEEEEECCCCCCCEecC---HHHHHHHHHHcCCEEEEECCCcccccC----Cch-hh------------CCCEEEee
Confidence 46899999999999999999 788999999999999999999753221 111 11 22488899
Q ss_pred CccccC-CCCceEEEEEecCHHHHHHHHhcccc-C-CCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 044773 90 LSKDLG-LPGFRVGAIYSNDDTVVAAATKMSSF-G-LVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEK 166 (289)
Q Consensus 90 ~sK~~g-~~G~r~G~i~~~~~~~~~~~~~~~~~-~-~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 166 (289)
+||.++ .++++.|+++++++.+.+.+.....+ + ..+++....+..-++ .+..+.++..++...+.+.|++
T Consensus 195 ~sK~l~G~~~~~~G~i~~~~~~~~~~l~~~~~~~g~~~sp~~a~l~lr~l~-------tl~~R~~~~~~na~~~a~~L~~ 267 (382)
T TIGR02080 195 CTKYLNGHSDVIAGAVIAKDPQVAEELAWWANNLGVTGGAFDSYLTLRGLR-------TLVARMRLQQRNAQAIVEYLQT 267 (382)
T ss_pred cceeccCCCCceeEEEEeCCHHHHHHHHHHHHccCCCCCHHHHHHHHcccc-------hHHHHHHHHHHHHHHHHHHHHh
Confidence 999995 56789999988777666655544333 2 244555444433332 2344455666788888888887
Q ss_pred c
Q 044773 167 A 167 (289)
Q Consensus 167 ~ 167 (289)
+
T Consensus 268 ~ 268 (382)
T TIGR02080 268 Q 268 (382)
T ss_pred C
Confidence 6
No 210
>TIGR03812 tyr_de_CO2_Arch tyrosine decarboxylase MnfA. Members of this protein family are the archaeal form, MnfA, of tyrosine decarboxylase, and are involved in methanofuran biosynthesis. Members show clear homology to the Enterococcus form, Tdc, that is involved in tyrosine decarboxylation for resistance to acidic conditions.
Probab=99.67 E-value=2.4e-14 Score=129.66 Aligned_cols=204 Identities=16% Similarity=0.179 Sum_probs=129.8
Q ss_pred CccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccC--C--CCccChhhhhhccccccCCCCCceEE
Q 044773 11 KVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFS--S--PGFVSIMEILKDRNCENTEVWNRVHI 86 (289)
Q Consensus 11 ~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~--~--~~~~~~~~~~~~~~~~~~d~~~~~i~ 86 (289)
++..++++.|+||||.+.+ +++|.++|+++++++++|++|..+... . .....+ .+ .......+
T Consensus 153 ~~~~vv~~~~~~~tG~~~~---~~~i~~l~~~~~~~livD~a~~~~~~~~~~~~~~~~~~-d~---------~~~~~d~~ 219 (373)
T TIGR03812 153 NTIGIVGIAGTTELGQIDD---IEELSKIALENGIYLHVDAAFGGFVIPFLKKGYNPPPF-DF---------SLPGVQSI 219 (373)
T ss_pred CcEEEEEECCCCCCCccCC---HHHHHHHHHHcCCeEEEEcCchhHHHHHHhcCCCCCCc-cc---------cCCCCCEE
Confidence 3445555568999999988 889999999999999999999754221 0 000000 00 01122345
Q ss_pred EecCccccCCCCceEEEEEecCHHHHHHHHhccccC----------CCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHH
Q 044773 87 VYSLSKDLGLPGFRVGAIYSNDDTVVAAATKMSSFG----------LVSSQTQYLLSALLSDKKFAQNYISENKKRLKQR 156 (289)
Q Consensus 87 i~s~sK~~g~~G~r~G~i~~~~~~~~~~~~~~~~~~----------~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~ 156 (289)
..|.+| +++++.++|+++..++.+.+.+.....+. +.+.....++..+++... ...+++..+++.++
T Consensus 220 ~~s~~K-~~~~~~~~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~gt~~~~~~~~~~~~l~~l~--~~g~~~~~~~~~~~ 296 (373)
T TIGR03812 220 TIDPHK-MGLSPIPAGGILFRSKSYLKYLSVDAPYLTVKKQATITGTRSGASAAATYAVIKYLG--REGYRKIVAECMEN 296 (373)
T ss_pred EECccc-cCCCcCCceEEEEeCHHHHhhhcccCcccCCCCCcceEeechhHHHHHHHHHHHHhC--HHHHHHHHHHHHHH
Confidence 567889 65577888877754555554443222221 122234444444444321 34457778889999
Q ss_pred HHHHHHHHHhcCCc-eecCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEEec-CCH
Q 044773 157 HRKLVSGLEKAGIS-CLKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFAN-MSE 234 (289)
Q Consensus 157 ~~~l~~~l~~~g~~-~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ris~~~-~~~ 234 (289)
++++.+.|+++|+. +.++..+ ++.+.++. . .++...|. ++||.+.++. .++++|+++.. +++
T Consensus 297 ~~~l~~~L~~~g~~~~~~~~~~-~v~~~~~~---~------~~v~~~L~-~~gi~v~~~~-----~~~~iRis~~~~~t~ 360 (373)
T TIGR03812 297 TRYLVEELKKIGFEPVIEPVLN-IVAFEVDD---P------EEVRKKLR-DRGWYVSVTR-----CPKALRIVVMPHVTR 360 (373)
T ss_pred HHHHHHHHHhCCCeEEcCCCce-EEEEEeCC---H------HHHHHHHH-HCCceeccCC-----CCCEEEEEEECCCCH
Confidence 99999999998765 3444443 44455542 1 24666665 5699987653 24689999964 699
Q ss_pred HHHHHHHHHHHH
Q 044773 235 DTLKLSMQRLKA 246 (289)
Q Consensus 235 e~l~~~l~~l~~ 246 (289)
++++.+++.|++
T Consensus 361 edid~l~~~L~~ 372 (373)
T TIGR03812 361 EHIEEFLEDLKE 372 (373)
T ss_pred HHHHHHHHHHhh
Confidence 999999999875
No 211
>PRK08776 cystathionine gamma-synthase; Provisional
Probab=99.66 E-value=3.3e-14 Score=129.88 Aligned_cols=131 Identities=15% Similarity=0.115 Sum_probs=94.4
Q ss_pred CCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEec
Q 044773 10 LKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVYS 89 (289)
Q Consensus 10 ~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~s 89 (289)
+++|+|++++|+||||.+.+ +++|+++|+++|+++|+|++|.... ...++ ++ +.++++.|
T Consensus 144 ~~tklV~l~~P~NPtG~v~d---l~~I~~la~~~gi~vIvD~a~a~~~----~~~pl-~~------------gaDivv~S 203 (405)
T PRK08776 144 QSPKLVLIETPSNPLLRITD---LRFVIEAAHKVGALTVVDNTFLSPA----LQKPL-EF------------GADLVLHS 203 (405)
T ss_pred cCCeEEEEECCCCCCCccCC---HHHHHHHHHHcCCEEEEECCCcccc----cCCcc-cc------------cCCEEEec
Confidence 47899999999999999977 9999999999999999999997421 11121 12 23488999
Q ss_pred CccccCCC-CceEEEEEecCHHHHHHHHhcccc--CCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 044773 90 LSKDLGLP-GFRVGAIYSNDDTVVAAATKMSSF--GLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEK 166 (289)
Q Consensus 90 ~sK~~g~~-G~r~G~i~~~~~~~~~~~~~~~~~--~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 166 (289)
++|.++.+ ++..|+++++++.+.+.+...... ...+++...++...+ +++..+.++..++...+.+.|++
T Consensus 204 ~tK~l~g~~~~~~G~vv~~~~~l~~~l~~~~~~~g~~~s~~~a~l~~~gl-------~tl~~r~~~~~~na~~la~~L~~ 276 (405)
T PRK08776 204 TTKYINGHSDVVGGAVVARDAELHQQLVWWANALGLTGSPFDAFLTLRGL-------RTLDARLRVHQENADAIAALLDG 276 (405)
T ss_pred CceeecCCCCceEEEEEeCCHHHHHHHHHHHHhcCCCCCHHHHHHHHhhh-------CcHHHHHHHHHHHHHHHHHHHHc
Confidence 99999744 578999998777666555433222 124555555554333 34566777788888888888887
Q ss_pred c
Q 044773 167 A 167 (289)
Q Consensus 167 ~ 167 (289)
+
T Consensus 277 ~ 277 (405)
T PRK08776 277 H 277 (405)
T ss_pred C
Confidence 6
No 212
>TIGR00709 dat 2,4-diaminobutyrate 4-transaminases. This family consists of L-diaminobutyric acid transaminases. This general designation covers both 2.6.1.76 (diaminobutyrate-2-oxoglutarate transaminase, which uses glutamate as the amino donor in DABA biosynthesis), and 2.6.1.46 (diaminobutyrate--pyruvate transaminase, which uses alanine as the amino donor). Most members with known function are 2.6.1.76, and at least some annotations as 2.6.1.46 in current databases at time of model revision are incorrect. A distinct branch of this family contains examples of 2.6.1.76 nearly all of which are involved in ectoine biosynthesis. A related enzyme is 4-aminobutyrate aminotransferase (EC 2.6.1.19), also called GABA transaminase. These enzymes all are pyridoxal phosphate-containing class III aminotransferase.
Probab=99.66 E-value=1.4e-14 Score=133.94 Aligned_cols=219 Identities=15% Similarity=0.089 Sum_probs=137.2
Q ss_pred CccEEEEeCCC-CCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEec
Q 044773 11 KVKGVLVTNPS-NPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVYS 89 (289)
Q Consensus 11 ~~~~i~l~~p~-NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~s 89 (289)
++.++++...+ |+....++++.+++|.++|++||+++|.||++.+++++|..+ ..... +....+.+
T Consensus 206 ~iaavi~Epi~g~~G~~~~~~~yl~~lr~lc~~~g~llI~DEV~tGfGRtG~~~-a~~~~------------gv~PDiv~ 272 (442)
T TIGR00709 206 KPAAVILEAIQGEGGVVAAPSEWLQKIREVTRKHDIKLILDEVQAGFGRSGTMF-AFEHA------------GIEPDFVV 272 (442)
T ss_pred ceEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCCCCchh-HHHHc------------CCCCcEEE
Confidence 45665555444 554556899999999999999999999999999987766432 22111 11122344
Q ss_pred CccccCCCCceEEEEEecCHHHHHHHH-hccccCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHhc-
Q 044773 90 LSKDLGLPGFRVGAIYSNDDTVVAAAT-KMSSFGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEKA- 167 (289)
Q Consensus 90 ~sK~~g~~G~r~G~i~~~~~~~~~~~~-~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~- 167 (289)
+||.+| .|+++|+++++++ +..... .....+..|++.+.++.+.|+... + ....++++++.+++.+.|+++
T Consensus 273 ~gK~l~-~G~Pigav~~~~~-~~~~~~~~~~~T~~gnpla~aaa~a~L~~i~--~---~~l~~~~~~~g~~l~~~L~~l~ 345 (442)
T TIGR00709 273 MSKAVG-GGLPLAVLLIAPE-FDAWQPAGHTGTFRGNQLAMVTGTEALNYWK--D---DNLAQNAQERGERITSFLDDMI 345 (442)
T ss_pred Eccccc-CCcccEEEEEchH-HhccCCCcCCCCCCcCHHHHHHHHHHHHHHH--h---cCHHHHHHHHHHHHHHHHHHHH
Confidence 899998 6899999999655 422211 112334478888888888875421 1 123345555555566666543
Q ss_pred ---CCceecCCceEEEEEecCccccC------C--ChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEEec-CCHH
Q 044773 168 ---GISCLKSNAGLFCWVDMRHLLSS------N--TFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFAN-MSED 235 (289)
Q Consensus 168 ---g~~~~~~~~g~~~~i~~~~~~~~------~--~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ris~~~-~~~e 235 (289)
++......-|.+..+.+.+.... . ...-...+...++ ++||.+.+.... .+.+|+.++. ++++
T Consensus 346 ~~~~~v~~vrG~Gl~~~ie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~Gvl~~~~~~~----~~~l~~~Ppl~it~~ 420 (442)
T TIGR00709 346 KEHPCIGNVRGRGLMQGIMIVDERQSKDATGAYPRDCELAAAIQGACF-ENGLLLETGGRE----GEVFRLLCPITIDQE 420 (442)
T ss_pred HhCCCeeeeeccceEEEEEEccCcccccccccCCcchHHHHHHHHHHH-HCCeEEeecCCC----CCEEEEECCCCCCHH
Confidence 32222222355666776432110 0 0011234555555 679998764322 3579999964 7999
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 044773 236 TLKLSMQRLKAFVDSITTT 254 (289)
Q Consensus 236 ~l~~~l~~l~~~l~~~~~~ 254 (289)
+++++++++.+++++...+
T Consensus 421 ei~~~~~~l~~~l~~~~~~ 439 (442)
T TIGR00709 421 ECEEGISRFKQAVEEALAE 439 (442)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 9999999999999876544
No 213
>PRK00062 glutamate-1-semialdehyde aminotransferase; Provisional
Probab=99.66 E-value=1e-14 Score=134.43 Aligned_cols=224 Identities=16% Similarity=0.114 Sum_probs=135.4
Q ss_pred hHHHhhhC-CCccEEEEeCCCCCCccCCC-HHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCC
Q 044773 2 YQLAQKRH-LKVKGVLVTNPSNPLGTTMS-RNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTE 79 (289)
Q Consensus 2 l~~~~~~~-~~~~~i~l~~p~NPtG~~~~-~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d 79 (289)
+++.+..+ .++.+|++.....-+|.+.+ .+++++|.++|++|++++|+||+|.++ ..+... ..+...
T Consensus 187 l~~~i~~~~~~~aaiivEpv~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~G~-r~g~~~--~~~~~~-------- 255 (426)
T PRK00062 187 VEELFEEYGDEIAAVIVEPVAGNMGVVPPKPGFLEGLRELCDEHGALLIFDEVMTGF-RVALGG--AQGYYG-------- 255 (426)
T ss_pred HHHHHHhCCCcEEEEEEeCCcCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeechhcc-ccCCcc--HHHHhC--------
Confidence 34445433 24555555533445788876 889999999999999999999999977 333321 122211
Q ss_pred CCCceEEEecCccccCCCCceEEEEEecCHHHHHHHHhc---c--ccCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHH
Q 044773 80 VWNRVHIVYSLSKDLGLPGFRVGAIYSNDDTVVAAATKM---S--SFGLVSSQTQYLLSALLSDKKFAQNYISENKKRLK 154 (289)
Q Consensus 80 ~~~~~i~i~s~sK~~g~~G~r~G~i~~~~~~~~~~~~~~---~--~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~ 154 (289)
...-+.++||.++ +|+++|+++++ +.+.+.+... . +.+..+++.+.++.+.|+...- ++..+..++...
T Consensus 256 ---~~pDi~~~gK~l~-~G~p~ga~~~~-~~i~~~~~~~~~~~~~~T~~~~p~~~aaa~a~L~~~~~-~~~~~~~~~~~~ 329 (426)
T PRK00062 256 ---VTPDLTTLGKIIG-GGLPVGAFGGR-REIMEQLAPLGPVYQAGTLSGNPLAMAAGLATLKLLKE-PGFYEELEALTK 329 (426)
T ss_pred ---CCcchHhhhhHhh-CCCcceeeeEH-HHHHHhhccCCCceecccCcCCHHHHHHHHHHHHHHhc-chHHHHHHHHHH
Confidence 1112578999998 89999999885 4555555311 1 2233677888777777664321 223444444444
Q ss_pred HHHHHHHHHHHhcCCcee-cCCceEEEEEecCccccC-------CChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEE
Q 044773 155 QRHRKLVSGLEKAGISCL-KSNAGLFCWVDMRHLLSS-------NTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFR 226 (289)
Q Consensus 155 ~~~~~l~~~l~~~g~~~~-~~~~g~~~~i~~~~~~~~-------~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~R 226 (289)
..++.|.+.+.++++... .+.|.++ .+.+...... ........+...++ ++||.+.|.. + +.++
T Consensus 330 ~~~~~l~~~~~~~~~~~~vrg~G~~~-~i~l~~~~~~~~~~~~~~~~~~~~~i~~~l~-~~Gv~v~~~~-~-----~~~~ 401 (426)
T PRK00062 330 RLAEGLKEAAKKAGIPLTVNRVGSMF-GLFFTDEPVTNYADAKKSDTERFARFFHAML-DEGVYLAPSQ-F-----EAGF 401 (426)
T ss_pred HHHHHHHHHHHHcCCceEEEEecceE-EEEEecCCCcchhhhccccHHHHHHHHHHHH-HCCeEeecCC-c-----Ccee
Confidence 444555555555565543 3445444 3444321100 00011234666666 6799998742 1 2467
Q ss_pred EEEecCCHHHHHHHHHHHHHHHHHH
Q 044773 227 VCFANMSEDTLKLSMQRLKAFVDSI 251 (289)
Q Consensus 227 is~~~~~~e~l~~~l~~l~~~l~~~ 251 (289)
+++. +++++++++++++.+++.+.
T Consensus 402 ~~~~-~t~~ei~~~~~~l~~~l~~~ 425 (426)
T PRK00062 402 VSAA-HTDEDIEKTLEAARKAFAAL 425 (426)
T ss_pred eecc-CCHHHHHHHHHHHHHHHHhh
Confidence 7754 69999999999999988653
No 214
>COG0160 GabT 4-aminobutyrate aminotransferase and related aminotransferases [Amino acid transport and metabolism]
Probab=99.65 E-value=2.3e-14 Score=129.95 Aligned_cols=216 Identities=15% Similarity=0.126 Sum_probs=145.5
Q ss_pred CccEEEEeCCCCCCccCC-CHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEec
Q 044773 11 KVKGVLVTNPSNPLGTTM-SRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVYS 89 (289)
Q Consensus 11 ~~~~i~l~~p~NPtG~~~-~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~s 89 (289)
++-++++..-+.-.|... |.+.++++.++|+++|+++|+||++.+++.+|.. ..+ +..+...-+-+
T Consensus 222 ~vAaiI~EpIQgegG~~v~p~~fl~~l~~~~~~~gillI~DEVQtG~GRTG~~-fa~------------E~~gv~PDivt 288 (447)
T COG0160 222 EVAAIIIEPIQGEGGIIVPPKGFLKALRKLCREHGILLIADEVQTGFGRTGKM-FAF------------EHFGVEPDIVT 288 (447)
T ss_pred ceeEEEEecccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCccccc-hhh------------hhcCCCCCEEE
Confidence 355555554476666655 6669999999999999999999999999888843 232 23345566888
Q ss_pred CccccCCCCceEEEEEecCHHHHHHH-HhccccCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHhc-
Q 044773 90 LSKDLGLPGFRVGAIYSNDDTVVAAA-TKMSSFGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEKA- 167 (289)
Q Consensus 90 ~sK~~g~~G~r~G~i~~~~~~~~~~~-~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~- 167 (289)
+||.+| .|+++|.++.++ .+.+.. .....++..|+++..+..+.|+...- +.+.++..+.-+++.+.|.++
T Consensus 289 ~aK~ig-~G~Pl~avv~r~-ei~~~~~g~~~~Tf~GNpva~Aaa~AvL~vie~-----e~L~~~a~~~G~~l~~~L~~l~ 361 (447)
T COG0160 289 LAKSLG-GGLPLSAVVGRA-EIMDWPPGGHGGTFGGNPVACAAALAVLDVIEE-----ENLLERAAELGEYLRDRLEELQ 361 (447)
T ss_pred eccccc-CCCceeEEeccH-HhcccCCcccCCCCCcCHHHHHHHHHHHHHHHH-----ccHHHHHHHHHHHHHHHHHHHH
Confidence 999999 699999999964 444422 22333455888888888887774321 133444444455555555443
Q ss_pred -CCceec--CCceEEEEEecCccc--cCCChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEEec-CCHHHHHHHH
Q 044773 168 -GISCLK--SNAGLFCWVDMRHLL--SSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFAN-MSEDTLKLSM 241 (289)
Q Consensus 168 -g~~~~~--~~~g~~~~i~~~~~~--~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ris~~~-~~~e~l~~~l 241 (289)
...+.. ..-|.++.+++.... ..+......+++..++ +.|+.+..+..++ +.+||.+.. .+++++++++
T Consensus 362 ~~~~~IgdVRG~Glm~giE~v~d~~t~~p~~~~~~~i~~~~~-~~Glil~~~G~~~----nviRi~PPL~is~e~~d~~l 436 (447)
T COG0160 362 EKHPLIGDVRGLGLMIGVELVKDRDTKEPDAELAAKIVARAF-ERGLLLLTCGPHG----NVLRILPPLTISDEELDEGL 436 (447)
T ss_pred hhcCceecccccceEEEEEEecCCCCCCCCHHHHHHHHHHHH-HcCCEEeccCCCC----cEEEEeCCcccCHHHHHHHH
Confidence 122221 222577778877532 1222244456777777 6699888766554 589999964 6999999999
Q ss_pred HHHHHHHHHH
Q 044773 242 QRLKAFVDSI 251 (289)
Q Consensus 242 ~~l~~~l~~~ 251 (289)
+.|.+++++.
T Consensus 437 ~il~~al~~~ 446 (447)
T COG0160 437 DILEEALKEA 446 (447)
T ss_pred HHHHHHHHhh
Confidence 9999998764
No 215
>KOG1359 consensus Glycine C-acetyltransferase/2-amino-3-ketobutyrate-CoA ligase [Amino acid transport and metabolism]
Probab=99.65 E-value=6.7e-15 Score=123.50 Aligned_cols=218 Identities=12% Similarity=0.080 Sum_probs=146.8
Q ss_pred CccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEecC
Q 044773 11 KVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVYSL 90 (289)
Q Consensus 11 ~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~s~ 90 (289)
+.|+|+.-..-..-|-..| +++|.+++++||+++++||+|....+ |.......+.++- +.+.+++.+++
T Consensus 193 r~klv~TDg~FSMDGdiaP---l~ei~~La~kYgaLlfiDecHaTgf~-G~tGrGt~E~~~v-------m~~vdiinsTL 261 (417)
T KOG1359|consen 193 RLKLVVTDGVFSMDGDIAP---LEEISQLAKKYGALLFIDECHATGFF-GETGRGTAEEFGV-------MGDVDIINSTL 261 (417)
T ss_pred eEEEEEecceeccCCCccc---HHHHHHHHHhcCcEEEEeecccceee-cCCCCChHHHhCC-------CCcceehhhhh
Confidence 4555444444567788888 99999999999999999999997755 4555566666552 56788999999
Q ss_pred ccccC-CCCceEEEEEecCHHHHHHHHhccccCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 044773 91 SKDLG-LPGFRVGAIYSNDDTVVAAATKMSSFGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEKAGI 169 (289)
Q Consensus 91 sK~~g-~~G~r~G~i~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~ 169 (289)
+|++| +.| ||..+|.+.+.-...+..+|...|++...++....+.... --.-.+..+..+.+.+++++.++..|+
T Consensus 262 gKAlGga~G---Gyttgp~~li~llrqr~RpylFSnslppavV~~a~ka~dl-lm~s~~~i~~~~a~~qrfr~~me~aGf 337 (417)
T KOG1359|consen 262 GKALGGASG---GYTTGPKPLISLLRQRSRPYLFSNSLPPAVVGMAAKAYDL-LMVSSKEIQSRQANTQRFREFMEAAGF 337 (417)
T ss_pred hhhhcCCCC---CCccCChhHHHHHHhcCCceeecCCCChhhhhhhHHHHHH-HHhhHHHHHHHHHHHHHHHHHHHhcCc
Confidence 99997 778 9999976554444455556655555443333333332221 111233445566777889999988898
Q ss_pred ceecCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCC-CCCCCeEEEEEec-CCHHHHHHHHHHHHHH
Q 044773 170 SCLKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCH-CTEPGWFRVCFAN-MSEDTLKLSMQRLKAF 247 (289)
Q Consensus 170 ~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~-~~~~~~~Ris~~~-~~~e~l~~~l~~l~~~ 247 (289)
.+...+- .++.+-+.+. .-+.+++.+|+ +.||.|..-++.- |.+...+|+.++. ++++++|++++++.++
T Consensus 338 tIsg~~h-PI~pv~lGda------~lA~~~ad~lL-k~Gi~Vigfs~PvVP~gkariRVqiSAaHt~edid~~i~Af~~v 409 (417)
T KOG1359|consen 338 TISGASH-PICPVMLGDA------RLASKMADELL-KRGIYVIGFSYPVVPKGKARIRVQISAAHTEEDIDRLIEAFSEV 409 (417)
T ss_pred eecCCCC-CccceecccH------HHHHHHHHHHH-hcCceEEeecCCcCCCCceEEEEEEehhcCHHHHHHHHHHHHHH
Confidence 8776442 2333334432 22356889999 5599998443332 2345678888854 8999999999999888
Q ss_pred HHHH
Q 044773 248 VDSI 251 (289)
Q Consensus 248 l~~~ 251 (289)
.+..
T Consensus 410 gr~~ 413 (417)
T KOG1359|consen 410 GRFL 413 (417)
T ss_pred HHhh
Confidence 7654
No 216
>TIGR01328 met_gam_lyase methionine gamma-lyase. This model describes a methionine gamma-lyase subset of a family of PLP-dependent trans-sulfuration enzymes. The member from the parasite Trichomonas vaginalis is described as catalyzing alpha gamma- and alpha-beta eliminations and gamma-replacement reactions on methionine, cysteine, and some derivatives. Likewise, the enzyme from Pseudomonas degrades cysteine as well as methionine.
Probab=99.65 E-value=2.4e-14 Score=130.47 Aligned_cols=130 Identities=18% Similarity=0.245 Sum_probs=86.3
Q ss_pred CCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEec
Q 044773 10 LKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVYS 89 (289)
Q Consensus 10 ~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~s 89 (289)
+++++|++++|+||+|.+.+ +++|.++|+++|+++|+|++|..... +. ++ ..+.++++.|
T Consensus 143 ~~tklV~le~p~Np~G~v~d---l~~I~~la~~~gi~livD~a~a~~~~-~~---~~-------------~~g~Divv~S 202 (391)
T TIGR01328 143 DNTKIVYFETPANPTMKLID---MERVCRDAHSQGVKVIVDNTFATPML-TN---PV-------------ALGVDVVVHS 202 (391)
T ss_pred cCCeEEEEECCCCCCCcccC---HHHHHHHHHHcCCEEEEECCCchhcc-CC---ch-------------hcCCCEEEcc
Confidence 57899999999999999998 88999999999999999999974322 11 11 1134488899
Q ss_pred CccccCCCCceE-EEEEecCHHHHHHHHhc--ccc-C-CCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHH
Q 044773 90 LSKDLGLPGFRV-GAIYSNDDTVVAAATKM--SSF-G-LVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGL 164 (289)
Q Consensus 90 ~sK~~g~~G~r~-G~i~~~~~~~~~~~~~~--~~~-~-~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l 164 (289)
+||.+|.+|.++ |++++ ++.+.+.+... ... + ..++.....+...++. +..+.++..++.+.+.+.|
T Consensus 203 ~sK~lgg~g~~~gG~v~~-~~~li~~l~~~~~~~~~g~~l~~~~a~l~l~~L~t-------l~~r~~~~~~na~~la~~L 274 (391)
T TIGR01328 203 ATKYIGGHGDVVAGLICG-KAELLQQIRMVGIKDMTGSVISPFDAWLILRGLKT-------LNIRMKRHSENAMKVAEYL 274 (391)
T ss_pred ccccccCCCCceEEEEEc-CHHHHHHHHHHHHHhCCCCCCCcHHHHHHHhCcCc-------HHHHHHHHHHHHHHHHHHH
Confidence 999998888775 66666 44544444322 112 1 1333333333332332 2344555677777788888
Q ss_pred Hhc
Q 044773 165 EKA 167 (289)
Q Consensus 165 ~~~ 167 (289)
+++
T Consensus 275 ~~~ 277 (391)
T TIGR01328 275 KSH 277 (391)
T ss_pred HhC
Confidence 776
No 217
>TIGR01325 O_suc_HS_sulf O-succinylhomoserine sulfhydrylase. This model describes O-succinylhomoserine sulfhydrylase, one of several related pyridoxal phosphate-dependent enzymes of cysteine and methionine metabolism. This enzyme is part of an alternative pathway of homocysteine biosynthesis, a step in methionine biosynthesis.
Probab=99.65 E-value=2.7e-14 Score=129.73 Aligned_cols=130 Identities=21% Similarity=0.302 Sum_probs=88.3
Q ss_pred CCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEec
Q 044773 10 LKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVYS 89 (289)
Q Consensus 10 ~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~s 89 (289)
+++++|++++|+||+|.+.+ +++|.++|+++|+++|+|++|....+ .. ++ ++ +.++++.|
T Consensus 138 ~~tklV~le~p~np~g~~~d---l~~I~~la~~~gi~livD~a~~~~~~-~~---pl-~~------------g~Divv~S 197 (380)
T TIGR01325 138 PNTKLVFVETPSNPLGELVD---IAALAELAHAIGALLVVDNVFATPVL-QQ---PL-KL------------GADVVVYS 197 (380)
T ss_pred CCceEEEEECCCCCCCeeeC---HHHHHHHHHHcCCEEEEECCCccccc-CC---ch-hh------------CCCEEEee
Confidence 47899999999999999988 89999999999999999999975322 11 11 12 34588899
Q ss_pred CccccCCCCceE-EEEEecCHHHHHHHHhc-cccCC-CChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 044773 90 LSKDLGLPGFRV-GAIYSNDDTVVAAATKM-SSFGL-VSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEK 166 (289)
Q Consensus 90 ~sK~~g~~G~r~-G~i~~~~~~~~~~~~~~-~~~~~-~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 166 (289)
+||.++.+|.++ |+++++++ +.+.+... ...+. .++.. ++.++..... +..+.+...++++.+.+.|++
T Consensus 198 ~sK~l~g~g~~~gG~vv~~~~-~~~~l~~~~~~~g~~~~p~~---a~~~l~~l~t----l~~r~~~~~~~a~~la~~L~~ 269 (380)
T TIGR01325 198 ATKHIDGQGRVMGGVIAGSEE-LMAEVAVYLRHTGPAMSPFN---AWVLLKGLET----LSLRMQKQFDSALAIAEWLQA 269 (380)
T ss_pred ccceecCCCCeEEEEEEeCHH-HHHHHHHHHHhhCCCCCHHH---HHHHHhccCc----HHHHHHHHHHHHHHHHHHHHc
Confidence 999998778777 67777544 44444333 22221 22232 3334443322 344556667777788888887
Q ss_pred c
Q 044773 167 A 167 (289)
Q Consensus 167 ~ 167 (289)
+
T Consensus 270 ~ 270 (380)
T TIGR01325 270 Q 270 (380)
T ss_pred C
Confidence 6
No 218
>PRK08593 4-aminobutyrate aminotransferase; Provisional
Probab=99.65 E-value=4.5e-14 Score=130.62 Aligned_cols=217 Identities=12% Similarity=0.063 Sum_probs=134.3
Q ss_pred CCccEEEEeCCCCCCccC-CCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEe
Q 044773 10 LKVKGVLVTNPSNPLGTT-MSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVY 88 (289)
Q Consensus 10 ~~~~~i~l~~p~NPtG~~-~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~ 88 (289)
.++.+|++....+..|.+ .+++.+++|.++|+++|+++|+||++.+++.+|..+ ..+.. +...-+.
T Consensus 206 ~~iAavI~EPv~g~gG~~~~~~~yl~~l~~lc~~~g~llI~DEv~tg~GrtG~~~--a~~~~-----------gv~pDi~ 272 (445)
T PRK08593 206 DEVACIVIETIQGDGGLLEPVPGYFEALYKFCREHGILFAVDDIQQGLGRTGKWS--SISHF-----------NITPDLM 272 (445)
T ss_pred CceEEEEEccccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhCCCcCchHH--HHHhc-----------CCCCCEe
Confidence 356665555446667776 788999999999999999999999999875555421 11111 1112256
Q ss_pred cCccccCCCCceEEEEEecCHHHHHHHHhcc--ccCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 044773 89 SLSKDLGLPGFRVGAIYSNDDTVVAAATKMS--SFGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEK 166 (289)
Q Consensus 89 s~sK~~g~~G~r~G~i~~~~~~~~~~~~~~~--~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 166 (289)
+++|.+| .|+++|+++++ +.+.+.+.... .....+++...++.+.|+..+. + ...++.+++.+++.+.|++
T Consensus 273 t~gK~l~-~G~p~gav~~~-~~i~~~~~~~~~~~T~~~~pl~~aaa~a~l~~l~~-~----~l~~~~~~~g~~l~~~L~~ 345 (445)
T PRK08593 273 SFGKSLA-GGMPMSAIVGR-KEIMESLEAPAHLFTTGANPVSCAAALATIDMIED-E----SLLQRSAEKGEYARKRFDQ 345 (445)
T ss_pred eeccccc-CCcccEEEEEc-HHHHhhhccCCCCCCCCCCHHHHHHHHHHHHHHHh-c----cHHHHHHHHHHHHHHHHHH
Confidence 8999998 88999999995 45555443211 1223677777776666654321 1 2334444444555555544
Q ss_pred c----CCceecCCceEEEEEecCccc--cCCChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEEec-CCHHHHHH
Q 044773 167 A----GISCLKSNAGLFCWVDMRHLL--SSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFAN-MSEDTLKL 239 (289)
Q Consensus 167 ~----g~~~~~~~~g~~~~i~~~~~~--~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ris~~~-~~~e~l~~ 239 (289)
+ ++......-|.++.+.+.... ..........+...++ ++||.+.+.. ...+|++++. +++++++.
T Consensus 346 l~~~~~~v~~vrG~Gl~~gi~l~~~~~~~~~~~~~~~~~~~~~~-~~Gv~~~~~~------~~~lr~~p~l~~t~~~id~ 418 (445)
T PRK08593 346 WVSKYNFVGDVRGYGLSIGIDIVSDKKLKTRDNEAALKICNYCF-EHGVVIIAVA------GNVLRFQPPLVITYEQLDT 418 (445)
T ss_pred HHhcCCcEEEEeccceEEEEEEecCCCcCCCcHHHHHHHHHHHH-HCCeEEeccC------CCEEEEECCCccCHHHHHH
Confidence 2 322222223445555554211 1111112234666665 6799987531 2479999954 79999999
Q ss_pred HHHHHHHHHHHHHH
Q 044773 240 SMQRLKAFVDSITT 253 (289)
Q Consensus 240 ~l~~l~~~l~~~~~ 253 (289)
+++++.+++++...
T Consensus 419 ~~~~l~~~l~~~~~ 432 (445)
T PRK08593 419 ALNTIEQAFTALEA 432 (445)
T ss_pred HHHHHHHHHHHHhc
Confidence 99999999987643
No 219
>PRK13034 serine hydroxymethyltransferase; Reviewed
Probab=99.65 E-value=1e-13 Score=127.28 Aligned_cols=220 Identities=13% Similarity=0.085 Sum_probs=134.3
Q ss_pred hHHHhhhCCCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCC
Q 044773 2 YQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVW 81 (289)
Q Consensus 2 l~~~~~~~~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 81 (289)
+++.++.. ++|+|+++++.+ |...+ +++|.++|+++|+++|+|++|+...+. .+. ... ...
T Consensus 160 le~~l~~~-~~klVi~~~~~~--g~~~d---l~~l~~la~~~g~~livD~Aha~G~~~-~g~-~~~-----------~~~ 220 (416)
T PRK13034 160 VEELAKEH-KPKLIIAGFSAY--PRELD---FARFREIADEVGALLMVDMAHIAGLVA-AGE-HPN-----------PFP 220 (416)
T ss_pred HHHHHhhc-CCeEEEECCCcc--ccccC---HHHHHHHHHHcCCEEEEeCcccccCcc-cCC-CCC-----------CCC
Confidence 34555443 578887766643 55555 888899999999999999999854332 111 000 012
Q ss_pred CceEEEecCccccC-CCCceEEEEEecCHHHHHHHHhccccC-C--CChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHH
Q 044773 82 NRVHIVYSLSKDLG-LPGFRVGAIYSNDDTVVAAATKMSSFG-L--VSSQTQYLLSALLSDKKFAQNYISENKKRLKQRH 157 (289)
Q Consensus 82 ~~~i~i~s~sK~~g-~~G~r~G~i~~~~~~~~~~~~~~~~~~-~--~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 157 (289)
+.+++++|++|+++ ..| |+++++++.+...++.....+ . ..+....++...+. ..+.....+.+++++++.
T Consensus 221 ~~Di~~~s~~K~l~g~~G---G~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~~al~--~~~~~~~~~~~~~l~~~a 295 (416)
T PRK13034 221 HAHVVTTTTHKTLRGPRG---GMILTNDEEIAKKINSAVFPGLQGGPLMHVIAAKAVAFG--EALQPEFKTYAKQVIANA 295 (416)
T ss_pred CceEEEEeCcccCCCCCC---eEEEECcHHHHHHHHhhcCCcccCCccHHHHHHHHHHHH--HHhChhHHHHHHHHHHHH
Confidence 35688999999994 345 888887766665554432111 1 12222222221222 111122345578899999
Q ss_pred HHHHHHHHhcCCceecC-CceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCC----CCCCCCCCeEEEEEe--
Q 044773 158 RKLVSGLEKAGISCLKS-NAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGS----SCHCTEPGWFRVCFA-- 230 (289)
Q Consensus 158 ~~l~~~l~~~g~~~~~~-~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~----~f~~~~~~~~Ris~~-- 230 (289)
++|.+.|.+.|+++..+ ..+...++.+...... .......+++.||.+.+-. .-.+..+..+|+++.
T Consensus 296 ~~l~~~L~~~G~~~~~~~~~t~i~~v~~~~~~~~------~~~~~~~L~~~GI~v~~~~~p~~~~~p~~~~~lR~~~~~~ 369 (416)
T PRK13034 296 QALAEVLKERGYDLVSGGTDNHLLLVDLRPKGLS------GKDAEQALERAGITVNKNTVPGDTESPFVTSGIRIGTPAG 369 (416)
T ss_pred HHHHHHHHHcCCEeccCCCCCcEEEEEcCCCCCC------HHHHHHHHHhCCcEEeccCCCCCCcCCCCCCeeEeCcHHH
Confidence 99999999889887643 2334555666543211 2344344567899987421 111223567999973
Q ss_pred ---cCCHHHHHHHHHHHHHHHHHH
Q 044773 231 ---NMSEDTLKLSMQRLKAFVDSI 251 (289)
Q Consensus 231 ---~~~~e~l~~~l~~l~~~l~~~ 251 (289)
.+++++++++++.|++++...
T Consensus 370 t~~~~~~~di~~l~~~l~~~~~~~ 393 (416)
T PRK13034 370 TTRGFGEAEFREIANWILDVLDDL 393 (416)
T ss_pred HhCCCCHHHHHHHHHHHHHHHhcC
Confidence 246899999999999998743
No 220
>TIGR01437 selA_rel uncharacterized pyridoxal phosphate-dependent enzyme. This model describes a protein related to a number of pyridoxal phosphate-dependent enzymes, and in particular to selenocysteine synthase (SelA), which converts Ser to selenocysteine on its tRNA. While resembling SelA, this protein is found only in species that have a better candidate SelA or else lack the other genes (selB, selC, and selD) required for selenocysteine incorporation.
Probab=99.64 E-value=1.3e-14 Score=130.97 Aligned_cols=208 Identities=14% Similarity=0.158 Sum_probs=125.6
Q ss_pred hHHHhhhCCCccEEE-EeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCC
Q 044773 2 YQLAQKRHLKVKGVL-VTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEV 80 (289)
Q Consensus 2 l~~~~~~~~~~~~i~-l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 80 (289)
+++++. +++++++ +++|+||+|.+.+ +++|.++|+++|+.+|+|++|+. ......++
T Consensus 141 le~ai~--~~t~ai~~v~~~~~~~g~~~~---~~~i~~~a~~~gi~vivD~a~~~------~~~~~~~~----------- 198 (363)
T TIGR01437 141 LEAAIT--EKTAAILYIKSHHCVQKSMLS---VEDAAQVAQEHNLPLIVDAAAEE------DLQKYYRL----------- 198 (363)
T ss_pred HHHhcC--hhceEEEEEecCCCCcCCcCC---HHHHHHHHHHcCCeEEEECCCCC------chHHHHHc-----------
Confidence 455554 5678765 6788999999999 78899999999999999999971 11111111
Q ss_pred CCceEEEecCccccCCCCceEEEEEecCHHHHHHHHhcc-cc---CCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHH
Q 044773 81 WNRVHIVYSLSKDLGLPGFRVGAIYSNDDTVVAAATKMS-SF---GLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQR 156 (289)
Q Consensus 81 ~~~~i~i~s~sK~~g~~G~r~G~i~~~~~~~~~~~~~~~-~~---~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~ 156 (289)
+.++++.|++|.+ +|.+.|+++.+++.+ +.+.... .. ..........+..+++.. .+...+..+.+.++
T Consensus 199 -g~D~~~~S~~K~l--~gp~~G~l~~~~~~i-~~~~~~~~~~~~~~~~~~~~~~gl~aAl~~~---~~~~~~~~~~~~~~ 271 (363)
T TIGR01437 199 -GADLVIYSGAKAI--EGPTSGLVLGKKKYI-EWVKLQSKGIGRAMKVGKENILGLTAALEQY---LSTGKESGAEMVAK 271 (363)
T ss_pred -CCCEEEEeCCccc--CCCceEEEEEcHHHH-HHHHhccCCCcceeccCHHHHHHHHHHHHHH---HccCcccHHHHHHH
Confidence 3457889999987 466799999854443 3332211 11 111122222333333211 11222333444556
Q ss_pred HHHHHHHHHhc-CCceecCC--ceE-----EEEEecCccccCCChhhHHHHHHHHHHhcC--eEEeCCCCCCCCCCCeEE
Q 044773 157 HRKLVSGLEKA-GISCLKSN--AGL-----FCWVDMRHLLSSNTFEAEMELWKKIVYDVK--LNISPGSSCHCTEPGWFR 226 (289)
Q Consensus 157 ~~~l~~~l~~~-g~~~~~~~--~g~-----~~~i~~~~~~~~~~~~~~~~~~~~ll~~~g--i~v~pg~~f~~~~~~~~R 226 (289)
++.+.+.|.+. |+++..+. .+. -+.++... .. .+..++.+.|. +.+ |.+++ .| .+++.+|
T Consensus 272 ~~~l~~~L~~i~g~~~~~~~~~~~~~~~~~~v~~~~~~--~g---~~~~~l~~~L~-~~~~~I~~r~--~~--~~~~~~~ 341 (363)
T TIGR01437 272 LTPFIEALNTLKGVSASIVQDEAGRDIARAEIRFDESE--LG---MTAADVVQALR-QGEPAIYTRG--YK--ANEGIIE 341 (363)
T ss_pred HHHHHHHHhcCCCeEEEEecCCCCCcCceEEEEEeccC--CC---CCHHHHHHHHh-cCCCCEEEee--ee--ecCCeEE
Confidence 77899999887 87766321 111 12222211 01 12346777664 556 66655 23 3467899
Q ss_pred EEEecCCHHHHHHHHHHHHHHH
Q 044773 227 VCFANMSEDTLKLSMQRLKAFV 248 (289)
Q Consensus 227 is~~~~~~e~l~~~l~~l~~~l 248 (289)
+++..++++|++.++++|++++
T Consensus 342 l~~~~~~~~e~~~~~~~l~~~~ 363 (363)
T TIGR01437 342 IDPRSVTGGQLDIIVERIREIV 363 (363)
T ss_pred EEeecCCHHHHHHHHHHHHHhC
Confidence 9997678999999999998753
No 221
>PRK08861 cystathionine gamma-synthase; Provisional
Probab=99.64 E-value=9.2e-14 Score=126.11 Aligned_cols=131 Identities=13% Similarity=0.143 Sum_probs=93.0
Q ss_pred CCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEec
Q 044773 10 LKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVYS 89 (289)
Q Consensus 10 ~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~s 89 (289)
+++++|++++|+||||.+++ +++|.++|+++|+++|+|++|....+. .+ . ++ +-++++.|
T Consensus 137 ~~tklV~lesP~NPtG~v~d---l~~I~~la~~~gi~vIvDea~~~~~~~-~p-l---~~------------GaDivv~S 196 (388)
T PRK08861 137 KKPKLILLETPSNPLVRVVD---IAELCQKAKAVGALVAVDNTFLTPVLQ-KP-L---EL------------GADFVIHS 196 (388)
T ss_pred cCCeEEEEECCCCCCCcccC---HHHHHHHHHHcCCEEEEECCccccccC-CC-c---cc------------CCCEEEee
Confidence 57999999999999999999 788899999999999999999853221 11 1 11 34589999
Q ss_pred CccccCCC-CceEEEEEecCHHHHHHHHhccccC--CCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 044773 90 LSKDLGLP-GFRVGAIYSNDDTVVAAATKMSSFG--LVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEK 166 (289)
Q Consensus 90 ~sK~~g~~-G~r~G~i~~~~~~~~~~~~~~~~~~--~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 166 (289)
++|.++.+ +...|+++++++.+.+.+....... ..++.....+.+-++. +.-+.++..++...+.+.|++
T Consensus 197 ~tK~l~G~~d~~gG~i~~~~~~~~~~~~~~~~~~G~~~~p~~a~l~~rgl~T-------l~lR~~~~~~~a~~~a~~L~~ 269 (388)
T PRK08861 197 TTKYINGHSDVIGGVLITKTKEHAEELAWWGNCIGATGTPFDSYMTLRGIRT-------LGARMRVHEESAQQILAYLQT 269 (388)
T ss_pred cceeccCCCcceeEEEEecHHHHHHHHHHHHhccCCCCChHHHHHHHhcCCC-------HHHHHHHHHHHHHHHHHHHHh
Confidence 99999744 5788999986666655554433332 2455555555555554 344455566777778888887
Q ss_pred c
Q 044773 167 A 167 (289)
Q Consensus 167 ~ 167 (289)
+
T Consensus 270 ~ 270 (388)
T PRK08861 270 Q 270 (388)
T ss_pred C
Confidence 6
No 222
>PRK07811 cystathionine gamma-synthase; Provisional
Probab=99.64 E-value=7e-14 Score=127.28 Aligned_cols=131 Identities=18% Similarity=0.235 Sum_probs=90.4
Q ss_pred CCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEec
Q 044773 10 LKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVYS 89 (289)
Q Consensus 10 ~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~s 89 (289)
+++|+|++++|+||||.+.+ +++|.++|+++|+++|+|++|..... .. ++ .. +.++++.|
T Consensus 145 ~~tklV~ie~p~NPtg~~~d---l~~I~~la~~~gi~lIvD~a~a~~~~-~~---p~-~~------------gaDivv~S 204 (388)
T PRK07811 145 PRTKLIWVETPTNPLLSITD---IAALAELAHDAGAKVVVDNTFASPYL-QQ---PL-AL------------GADVVVHS 204 (388)
T ss_pred cCCeEEEEECCCCCcceecC---HHHHHHHHHHcCCEEEEECCCCcccc-CC---ch-hh------------CCcEEEec
Confidence 47899999999999999877 99999999999999999999985322 11 11 11 33488999
Q ss_pred CccccCCCC-ceEEEEEecCHHHHHHHHhcccc-CC-CChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 044773 90 LSKDLGLPG-FRVGAIYSNDDTVVAAATKMSSF-GL-VSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEK 166 (289)
Q Consensus 90 ~sK~~g~~G-~r~G~i~~~~~~~~~~~~~~~~~-~~-~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 166 (289)
++|.++.+| .+.||++++++.+.+.+...... +. .++.....+...++. +..+.+...++.+.+.+.|++
T Consensus 205 ~sK~l~g~~~~~gG~vv~~~~~l~~~~~~~~~~~g~~~s~~~a~l~~~~L~t-------l~~R~~~~~~na~~la~~L~~ 277 (388)
T PRK07811 205 TTKYIGGHSDVVGGALVTNDEELDEAFAFLQNGAGAVPGPFDAYLTLRGLKT-------LAVRMDRHSENAEAVAEFLAG 277 (388)
T ss_pred CceeecCCCCcEEEEEEECCHHHHHHHHHHHHhcCCCCCHHHHHHHHhccCc-------HHHHHHHHHHHHHHHHHHHHh
Confidence 999998554 67899999777776655544332 21 333433333333332 344445566777888888887
Q ss_pred c
Q 044773 167 A 167 (289)
Q Consensus 167 ~ 167 (289)
+
T Consensus 278 ~ 278 (388)
T PRK07811 278 H 278 (388)
T ss_pred C
Confidence 6
No 223
>PRK05964 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional
Probab=99.64 E-value=2.1e-14 Score=132.33 Aligned_cols=218 Identities=15% Similarity=0.078 Sum_probs=133.9
Q ss_pred hHHHhhhC-CCccEEEEeC-CCCCCccCC-CHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccC
Q 044773 2 YQLAQKRH-LKVKGVLVTN-PSNPLGTTM-SRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENT 78 (289)
Q Consensus 2 l~~~~~~~-~~~~~i~l~~-p~NPtG~~~-~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (289)
+++++..+ .++.+|++.. .++..|..+ +.+++++|.++|++||+++|+||+|.+++.+|..+. .+.
T Consensus 189 l~~~l~~~~~~iaavi~Ep~i~~~gG~~~~~~~~l~~l~~lc~~~g~llI~DEv~tg~gr~G~~~a--~~~--------- 257 (423)
T PRK05964 189 LEALLEKHAGEIAAFIVEPLVQGAGGMLFYDPRYLAELRRICDRHGVLLIFDEIATGFGRTGTLFA--CEQ--------- 257 (423)
T ss_pred HHHHHHhCCCcEEEEEEecccccCCCcccCCHHHHHHHHHHHHHcCCEEEEechhhCCCcCcchhH--HHh---------
Confidence 34455443 3455655543 266677655 899999999999999999999999988766553221 111
Q ss_pred CCCCceEEEecCccccCCCCceEEEEEecCHHHHHHHHhc--------cccCCCChHHHHHHHHHhCCchHHHHHHHHHH
Q 044773 79 EVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDTVVAAATKM--------SSFGLVSSQTQYLLSALLSDKKFAQNYISENK 150 (289)
Q Consensus 79 d~~~~~i~i~s~sK~~g~~G~r~G~i~~~~~~~~~~~~~~--------~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~ 150 (289)
.+....+.+++|.++.+++++|+++++ +.+.+.+... .+.+..|++...++.+.++...- + ...
T Consensus 258 --~~v~pDi~~~~K~l~gG~~p~~av~~~-~~i~~~~~~~~~~~~~~~~~T~~~np~~~aaa~a~l~~l~~-~----~~~ 329 (423)
T PRK05964 258 --AGVSPDIMCLSKGLTGGYLPLAATLCT-AEIFEAFYSDDRAKAFMHSPSYTANPLACAAANASLDLFED-E----PVL 329 (423)
T ss_pred --cCCCCCeeeeehhhhcCcccceEEEEc-HHHHHhhhcCCcccccccCCCCCcCHHHHHHHHHHHHHHHh-c----CHH
Confidence 122233567899998333899998884 5555544321 12223677777776666653211 1 223
Q ss_pred HHHHHHHHHHHHHHHhc-CCce---ecCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEE
Q 044773 151 KRLKQRHRKLVSGLEKA-GISC---LKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFR 226 (289)
Q Consensus 151 ~~~~~~~~~l~~~l~~~-g~~~---~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~R 226 (289)
+++++..+++.+.|++. .... .... |.++.+.+...... .....+...|+ ++||.+.+.. +.+|
T Consensus 330 ~~~~~~g~~l~~~l~~l~~~~~i~~vrg~-Gl~~~i~l~~~~~~---~~~~~l~~~l~-~~Gv~v~~~~-------~~lR 397 (423)
T PRK05964 330 ERVAALSAGLAEGLEPFRDLPGVADVRVL-GAIGAVELDRPVLE---RDGPALRAFAL-ERGVLLRPLG-------NTIY 397 (423)
T ss_pred HHHHHHHHHHHHHHHhhccCCCeEEeecc-cEEEEEEeccCcch---hHHHHHHHHHH-HCCeEEEecC-------CEEE
Confidence 44445555555555544 2221 1223 45555666532110 11234666665 6799998632 3799
Q ss_pred EEEec-CCHHHHHHHHHHHHHHHHH
Q 044773 227 VCFAN-MSEDTLKLSMQRLKAFVDS 250 (289)
Q Consensus 227 is~~~-~~~e~l~~~l~~l~~~l~~ 250 (289)
|++.. ++++|++.+++++.+++++
T Consensus 398 ~~p~l~~t~edId~~v~~l~~al~~ 422 (423)
T PRK05964 398 LMPPYIITAEELDRITDAIVEVADE 422 (423)
T ss_pred EeCCcccCHHHHHHHHHHHHHHHhh
Confidence 99853 7999999999999999875
No 224
>TIGR02006 IscS cysteine desulfurase IscS. This model represents IscS, one of several cysteine desulfurases from a larger protein family designated (misleadingly, in this case) class V aminotransferases. IscS is one of at least 6 enzymes characteristic of the IscSUA-hscAB-fsx system of iron-sulfur cluster assembly. Scoring almost as well as proteobacterial sequences included in the model are mitochondrial cysteine desulfurases, apparently from an analogous system in eukaryotes. The sulfur, taken from cysteine, may be used in other systems as well, such as tRNA base modification and biosynthesis of other cofactors.
Probab=99.63 E-value=2e-14 Score=131.69 Aligned_cols=210 Identities=14% Similarity=0.170 Sum_probs=138.2
Q ss_pred CCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEec
Q 044773 10 LKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVYS 89 (289)
Q Consensus 10 ~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~s 89 (289)
++++++++++|+||||.+.+ +++|.++|+++|+++++|++++. +..+..+.+ .+.++++.|
T Consensus 141 ~~~~lv~v~~~~n~tG~~~~---~~~I~~l~~~~g~~livD~a~a~----g~~~~~~~~------------~~~D~~~~s 201 (402)
T TIGR02006 141 DDTILVSIMHVNNEIGVIQD---IAAIGEICRERKVFFHVDAAQSV----GKIPINVNE------------LKVDLMSIS 201 (402)
T ss_pred CCCEEEEEECCCcCceeccc---HHHHHHHHHHcCCEEEEEcchhc----CCcccCccc------------cCCCEEEEe
Confidence 46889999999999999998 88999999999999999999974 222222222 245688899
Q ss_pred CccccCCCCceEEEEEecCHHHHHH--HHhc------cccCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHH
Q 044773 90 LSKDLGLPGFRVGAIYSNDDTVVAA--ATKM------SSFGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLV 161 (289)
Q Consensus 90 ~sK~~g~~G~r~G~i~~~~~~~~~~--~~~~------~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~ 161 (289)
.+|.+|.+| +|+++++++..... .... ...++.+.....++...++. +...++...+++++.++++.
T Consensus 202 ~~K~~gp~G--~G~l~~~~~~~~~~~~~~~g~~~~~~~~~gt~~~~~~~al~~al~~---~~~~~~~~~~~~~~l~~~l~ 276 (402)
T TIGR02006 202 GHKIYGPKG--IGALYVRRKPRVRLEALIHGGGHERGMRSGTLPTHQIVGMGEAFRI---AKEEMAQDTAHVLALRDRLL 276 (402)
T ss_pred hhhhcCCCc--eEEEEEccCCCCCCCceecCCCccCCccCCCccHHHHHHHHHHHHH---HHHhHHHHHHHHHHHHHHHH
Confidence 999887446 89988865432211 1110 01123444555555555543 24456777888999999999
Q ss_pred HHHHhc-CCceecCCc---eEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCC-----------------
Q 044773 162 SGLEKA-GISCLKSNA---GLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCT----------------- 220 (289)
Q Consensus 162 ~~l~~~-g~~~~~~~~---g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~----------------- 220 (289)
+.|.++ ++.+..+.. ...+.+.+.. ... ..+...+ .+|.+..|..|.+.
T Consensus 277 ~~l~~~~~v~~~~~~~~~~p~~~~v~f~~-~~~------~~~~~~l---~~i~v~~G~~c~~~~~~~~~~l~~lg~~~~~ 346 (402)
T TIGR02006 277 NGIKSIEEVYLNGDLEHRVPGNLNVSFNY-VEG------ESLIMAL---KDLAVSSGSACTSASLEPSYVLRALGINDEL 346 (402)
T ss_pred HHHhcCCCEEEeCCccccCCCeEEEEEeC-cCH------HHHHHhc---CCEEEechhhcCCCCCCccHHHHHcCCChhh
Confidence 999876 555443211 0011122221 111 2233322 48988888877541
Q ss_pred CCCeEEEEEec-CCHHHHHHHHHHHHHHHHHHHH
Q 044773 221 EPGWFRVCFAN-MSEDTLKLSMQRLKAFVDSITT 253 (289)
Q Consensus 221 ~~~~~Ris~~~-~~~e~l~~~l~~l~~~l~~~~~ 253 (289)
..+.+|+|++. ++++|++.+++.|+++++....
T Consensus 347 ~~~~vR~S~~~~~t~edid~l~~~l~~~~~~~~~ 380 (402)
T TIGR02006 347 AHSSIRFTIGRFTTEEEIDYAVKLVKSAIDKLRE 380 (402)
T ss_pred cCceEEEEecCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 13789999975 7999999999999999877543
No 225
>PRK08574 cystathionine gamma-synthase; Provisional
Probab=99.63 E-value=9.7e-14 Score=126.13 Aligned_cols=137 Identities=15% Similarity=0.122 Sum_probs=88.3
Q ss_pred HHHhhhCCCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCC
Q 044773 3 QLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWN 82 (289)
Q Consensus 3 ~~~~~~~~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 82 (289)
++++..+ ++|+|++++|+||||.+++ +++|+++|+++|+++|+|++|... .. ..++ .+ +
T Consensus 130 ~~~i~~~-~tklV~ie~p~NPtG~v~d---l~~I~~la~~~gi~livD~t~a~~-~~---~~~l-~~------------G 188 (385)
T PRK08574 130 IEAIKEG-RTKLVFIETMTNPTLKVID---VPEVAKAAKELGAILVVDNTFATP-LL---YRPL-RH------------G 188 (385)
T ss_pred HHhcCcc-CceEEEEECCCCCCCEecC---HHHHHHHHHHcCCEEEEECCCCcc-cc---CChh-hh------------C
Confidence 4444432 7899999999999999999 889999999999999999999632 11 1111 11 4
Q ss_pred ceEEEecCccccCCCCce-EEEEEecCHHHHHHHHhccc-cCC-CChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHH
Q 044773 83 RVHIVYSLSKDLGLPGFR-VGAIYSNDDTVVAAATKMSS-FGL-VSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRK 159 (289)
Q Consensus 83 ~~i~i~s~sK~~g~~G~r-~G~i~~~~~~~~~~~~~~~~-~~~-~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 159 (289)
.++++.|+||+++.+|-. .|++++.++.+.+.+..... ++. .+++....+...++. +..+.+...++.+.
T Consensus 189 aDivv~S~sK~l~g~~d~~gG~vi~~~~~~~~~~~~~~~~~g~~~~p~~a~l~l~~l~t-------L~~R~~~~~~na~~ 261 (385)
T PRK08574 189 ADFVVHSLTKYIAGHNDVVGGVAVAWSGEFLEELWEWRRRLGTIMQPFEAYLVLRGLKT-------LEVRFERQCRNAMA 261 (385)
T ss_pred CcEEEeeCceeecCCCCceeEEEEECcHHHHHHHHHHHHhcCCCCCHHHHHHHHcccCc-------HHHHHHHHHHHHHH
Confidence 568999999999766654 47677766666655543333 221 333323222222222 23344444556677
Q ss_pred HHHHHHhc
Q 044773 160 LVSGLEKA 167 (289)
Q Consensus 160 l~~~l~~~ 167 (289)
+.+.|+++
T Consensus 262 la~~L~~~ 269 (385)
T PRK08574 262 IAEFLSEH 269 (385)
T ss_pred HHHHHHcC
Confidence 77777765
No 226
>PRK14012 cysteine desulfurase; Provisional
Probab=99.63 E-value=3.3e-14 Score=130.38 Aligned_cols=213 Identities=14% Similarity=0.205 Sum_probs=135.4
Q ss_pred hHHHhhhCCCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCC
Q 044773 2 YQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVW 81 (289)
Q Consensus 2 l~~~~~~~~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 81 (289)
+++++. ++++++++++++||||.+.+ +++|.++|+++|+++|+|++++. +....++.. .
T Consensus 137 l~~~i~--~~t~lv~~~~~~n~tG~~~~---~~~I~~la~~~g~~vivD~a~~~----g~~~~~~~~------------~ 195 (404)
T PRK14012 137 LEAAMR--DDTILVSIMHVNNEIGVIQD---IAAIGEICRERGIIFHVDAAQSV----GKVPIDLSK------------L 195 (404)
T ss_pred HHHhcC--CCCEEEEEECcCCCccchhh---HHHHHHHHHHcCCEEEEEcchhc----CCcccCccc------------C
Confidence 344443 46899999999999999998 89999999999999999999973 222222221 2
Q ss_pred CceEEEecCccccCCCCceEEEEEecCHHHHHHHHhc--------cccCCCChHHHHHHHHHhCCchHHHHHHHHHHHHH
Q 044773 82 NRVHIVYSLSKDLGLPGFRVGAIYSNDDTVVAAATKM--------SSFGLVSSQTQYLLSALLSDKKFAQNYISENKKRL 153 (289)
Q Consensus 82 ~~~i~i~s~sK~~g~~G~r~G~i~~~~~~~~~~~~~~--------~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~ 153 (289)
+.++++.|++|.+| |+ ++|+++++++......... ...++.+......+.+++... .....+..++.
T Consensus 196 ~~D~~~~s~~K~~g-p~-g~G~l~~~~~~~~~~~~~~~g~~~~~~~~~gt~~~~~~~~l~~al~~~---~~~~~~~~~~~ 270 (404)
T PRK14012 196 KVDLMSFSAHKIYG-PK-GIGALYVRRKPRVRLEAQMHGGGHERGMRSGTLPTHQIVGMGEAARIA---KEEMATENERI 270 (404)
T ss_pred CCCEEEEehhhccC-CC-ceEEEEEecCCCCCCCceecCCCccCCccCCCcCHHHHHHHHHHHHHH---HhhHHHHHHHH
Confidence 34577889999887 54 6899988654322111100 011222333334444444322 23345566777
Q ss_pred HHHHHHHHHHHHhc-CCceecC-----CceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCC-------
Q 044773 154 KQRHRKLVSGLEKA-GISCLKS-----NAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCT------- 220 (289)
Q Consensus 154 ~~~~~~l~~~l~~~-g~~~~~~-----~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~------- 220 (289)
++..+++.+.|+++ ++.+.++ ...+++++...+. .++...+ .++.+..|..|.+.
T Consensus 271 ~~l~~~l~~~L~~~~~i~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~l---~~~~i~~g~~~~~~~~~~~~~ 338 (404)
T PRK14012 271 RALRDRLWNGIKDIEEVYLNGDLEQRVPGNLNVSFNYVEG---------ESLIMAL---KDLAVSSGSACTSASLEPSYV 338 (404)
T ss_pred HHHHHHHHHHHhcCCCEEEeCCccccCCCEEEEEEeCcCH---------HHHHHhC---CCeEEEchhhhCCCCCCCCHH
Confidence 88888888888775 4444321 1233455544221 2344443 27777777666432
Q ss_pred ----------CCCeEEEEEec-CCHHHHHHHHHHHHHHHHHHH
Q 044773 221 ----------EPGWFRVCFAN-MSEDTLKLSMQRLKAFVDSIT 252 (289)
Q Consensus 221 ----------~~~~~Ris~~~-~~~e~l~~~l~~l~~~l~~~~ 252 (289)
..+.+|+++.. ++++|++.+++.|+++++...
T Consensus 339 ~~~~~~~~~~~~~~iRls~~~~~t~~dvd~~~~~l~~~~~~~~ 381 (404)
T PRK14012 339 LRALGLNDELAHSSIRFSLGRFTTEEEIDYAIELVRKSIGKLR 381 (404)
T ss_pred HHHcCCChhhcCceEEEEecCCCCHHHHHHHHHHHHHHHHHHH
Confidence 13689999965 799999999999999887653
No 227
>PRK00451 glycine dehydrogenase subunit 1; Validated
Probab=99.63 E-value=1.8e-14 Score=133.82 Aligned_cols=204 Identities=13% Similarity=0.103 Sum_probs=132.0
Q ss_pred CCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEE--ecCCCCCccCCCCccChhhhhhccccccCCCCCceEEE
Q 044773 10 LKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLIS--DEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIV 87 (289)
Q Consensus 10 ~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~--Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i 87 (289)
+++++|++++| ||||.+.+ +++|.++|+++|+++++ |.+.. +... .. +..+.++++
T Consensus 203 ~~t~~v~l~~p-n~tG~v~~---l~~I~~~a~~~~~~~iv~~d~~~~-----g~~~-~~------------~~~~~D~~~ 260 (447)
T PRK00451 203 DDTAAVVVQYP-NFFGVIED---LEEIAEIAHAGGALFIVGVDPVSL-----GLLK-PP------------GEYGADIVV 260 (447)
T ss_pred CCeEEEEEECC-CCCCeeCC---HHHHHHHHHHCCCEEEEEcChHHh-----ccCC-Cc------------ccCCCCEEE
Confidence 57899999999 89999977 99999999999999988 43321 1110 00 123445665
Q ss_pred e---cCccccCCCCceEEEEEecCHHHHHH---------------------------HHhccccCCC--ChHHH-HHHHH
Q 044773 88 Y---SLSKDLGLPGFRVGAIYSNDDTVVAA---------------------------ATKMSSFGLV--SSQTQ-YLLSA 134 (289)
Q Consensus 88 ~---s~sK~~g~~G~r~G~i~~~~~~~~~~---------------------------~~~~~~~~~~--~~~~q-~~~~~ 134 (289)
+ +|||.++++|.++||++++++.+... .+........ +...+ .+++.
T Consensus 261 ~s~~k~~~~~~~~Gpg~G~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aaa~ 340 (447)
T PRK00451 261 GEGQPLGIPLSFGGPYLGFFATRKKLVRQMPGRLVGETVDADGKRGFVLTLQAREQHIRREKATSNICTNQALNALAAAI 340 (447)
T ss_pred ECCCcCCCCCCCCCCCchHHHhhHHHHhhCCCCEeeeecccCCCeeeEeeccccccccccccccccccccHHHHHHHHHH
Confidence 5 78888877888999999865444331 0111111111 11222 22222
Q ss_pred HhCCchHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCceecCCceEEEE--EecCccccCCChhhHHHHHHHHHHhcCeE-
Q 044773 135 LLSDKKFAQNYISENKKRLKQRHRKLVSGLEKA-GISCLKSNAGLFCW--VDMRHLLSSNTFEAEMELWKKIVYDVKLN- 210 (289)
Q Consensus 135 ~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~~~~~~~g~~~~--i~~~~~~~~~~~~~~~~~~~~ll~~~gi~- 210 (289)
.+.... +..+++.++++.++++++.+.|+++ |+++. ++++|.+ ++++. +..++++.|+++ ||.
T Consensus 341 ~l~~~~--~~g~~~~~~~~~~~~~~l~~~L~~~~g~~~~--~~~~~~~~~v~~~~--------~~~~~~~~L~~~-gi~~ 407 (447)
T PRK00451 341 YMSLLG--PEGLRELAEQNHQKAHYLAERLAEIGGVELF--DGPFFNEFVVRLPK--------PAEEVNEALLEK-GILG 407 (447)
T ss_pred HHHHHC--HHHHHHHHHHHHHHHHHHHHHHhhcCCEEec--CCCeEEEEEEecCC--------CHHHHHHHHHhc-CCCC
Confidence 222111 4457888899999999999999988 67665 3444443 44421 124688888755 665
Q ss_pred EeCCCCCCCCCCCeEEEEEec-CCHHHHHHHHHHHHHHH
Q 044773 211 ISPGSSCHCTEPGWFRVCFAN-MSEDTLKLSMQRLKAFV 248 (289)
Q Consensus 211 v~pg~~f~~~~~~~~Ris~~~-~~~e~l~~~l~~l~~~l 248 (289)
..++..+++...+++|+++.. +++++++++++.|++++
T Consensus 408 ~~~~~~~~~~~~~~~rvs~~~~~t~e~i~~l~~~L~~~~ 446 (447)
T PRK00451 408 GYDLGRYYPELGNHLLVCVTEKRTKEDIDALVAALGEVL 446 (447)
T ss_pred CcccccccCCcCCEEEEecCCCCCHHHHHHHHHHHHHHh
Confidence 456666664445789999963 69999999999998754
No 228
>PRK03715 argD acetylornithine transaminase protein; Provisional
Probab=99.62 E-value=3.2e-14 Score=129.79 Aligned_cols=209 Identities=15% Similarity=0.171 Sum_probs=129.6
Q ss_pred CccEEEEeCCCCCCccCC-CHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEec
Q 044773 11 KVKGVLVTNPSNPLGTTM-SRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVYS 89 (289)
Q Consensus 11 ~~~~i~l~~p~NPtG~~~-~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~s 89 (289)
++.+|++...++..|... +.+.+++|.++|+++|+++|+||+|.+++.+|..+.. +.. +...-+.+
T Consensus 179 ~~aavi~Epv~~~gG~~~~~~~~l~~l~~l~~~~~~llI~DEv~tG~GRtG~~~a~--~~~-----------gv~PDi~t 245 (395)
T PRK03715 179 KTVAVMLEPVQGEGGVIPATREFMQQLRALTKQHGLLLIVDEVQTGCGRTGTLFAY--ELS-----------GIEPDIMT 245 (395)
T ss_pred CceEEEEeCCcCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCCCcchhhH--hhc-----------CCCCceee
Confidence 466656554466777764 6889999999999999999999999987665554211 111 11123578
Q ss_pred CccccCCCCceEEEEEecCHHHHHHHHh-ccccCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHhc-
Q 044773 90 LSKDLGLPGFRVGAIYSNDDTVVAAATK-MSSFGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEKA- 167 (289)
Q Consensus 90 ~sK~~g~~G~r~G~i~~~~~~~~~~~~~-~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~- 167 (289)
++|.+| .|+++|.++++++. ...... ..+.+..+++...++.+.|+... + ....++++++.+++.+.|+++
T Consensus 246 ~gK~lg-~G~p~~av~~~~~i-~~~~~~~~~~T~~g~pl~~aaala~L~~l~---~--~~l~~~~~~~g~~l~~~L~~l~ 318 (395)
T PRK03715 246 LGKGIG-GGVPLAALLAKAEV-AVFEAGDQGGTYNGNPLMTAVGVAVISQLL---A--PGFLEGVRARGEYLKEKLLELS 318 (395)
T ss_pred ehhhhh-CCcceEEEEEcccc-ccccCCCcCCCCCCCHHHHHHHHHHHHHHH---h--ccHHHHHHHHHHHHHHHHHHHh
Confidence 999998 78999999996554 322111 12222356666666555554321 1 234555666666666666543
Q ss_pred ---CCceecCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEEec-CCHHHHHHHHHH
Q 044773 168 ---GISCLKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFAN-MSEDTLKLSMQR 243 (289)
Q Consensus 168 ---g~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ris~~~-~~~e~l~~~l~~ 243 (289)
++...... |.++.+.+.+.... ...+.+..+. +.||.+.+.. ...+||++.. ++++++++++++
T Consensus 319 ~~~~i~~vrG~-Glm~~i~l~~~~~~----~~~~~~~~~~-~~Gi~~~~~~------~~~lR~~p~l~~t~~ei~~~~~~ 386 (395)
T PRK03715 319 EERGLEGERGE-GLLRALLLGKDIGP----QIVEKARDMQ-PDGLLLNAPR------PNLLRFMPALNVTTEEIDQMIAM 386 (395)
T ss_pred hcCCcCeEEcc-eeEEEEEecCchHH----HHHHHHHhcc-CCCEEEeecC------CCEEEEeCCcccCHHHHHHHHHH
Confidence 43322233 55666776542110 1111222222 3399987432 2579999954 799999999999
Q ss_pred HHHHHHHH
Q 044773 244 LKAFVDSI 251 (289)
Q Consensus 244 l~~~l~~~ 251 (289)
|.+++++.
T Consensus 387 l~~~l~~~ 394 (395)
T PRK03715 387 LRSVLDKL 394 (395)
T ss_pred HHHHHHhh
Confidence 99988753
No 229
>PRK08064 cystathionine beta-lyase; Provisional
Probab=99.62 E-value=8.4e-14 Score=126.86 Aligned_cols=204 Identities=15% Similarity=0.153 Sum_probs=123.9
Q ss_pred CCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEec
Q 044773 10 LKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVYS 89 (289)
Q Consensus 10 ~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~s 89 (289)
+++++|++++|+||||.+.+ +++|.++|+++|+++|+|++|..... . .++ ++ +.++++.|
T Consensus 137 ~~tklV~l~~p~NptG~~~d---l~~I~~la~~~g~~vvvD~a~~~~~~-~---~~~-~~------------g~Divv~S 196 (390)
T PRK08064 137 PNTKLFYVETPSNPLLKVTD---IRGVVKLAKAIGCLTFVDNTFLTPLL-Q---KPL-DL------------GADVVLHS 196 (390)
T ss_pred CCceEEEEECCCCCCcEecc---HHHHHHHHHHcCCEEEEECCCCcccc-c---Cch-hh------------CCcEEEee
Confidence 47899999999999999987 88999999999999999999975311 1 111 12 44588999
Q ss_pred CccccC-CCCceEEEEEecCHHHHHHHHhccccCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 044773 90 LSKDLG-LPGFRVGAIYSNDDTVVAAATKMSSFGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEKAG 168 (289)
Q Consensus 90 ~sK~~g-~~G~r~G~i~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g 168 (289)
+||.++ .+|.-.|+++++++.+.+.+......+..+...+.+.. ++.... .+..+.+...++...+.+.|++++
T Consensus 197 ~tK~~~G~~~~laG~~v~~~~~~~~~l~~~~~~~g~~~~~~~a~l-~~~gl~----tl~~R~~~~~~~a~~la~~L~~~~ 271 (390)
T PRK08064 197 ATKFLAGHSDVLAGLAVVKDEELAQKLYFLQNSFGAVLGVQDCWL-VLRGLK----TLHVRLEHSSETANKIALYLQEHP 271 (390)
T ss_pred cceeccCCccceeEEEEeCCHHHHHHHHHHHHhcCCCCCHHHHHH-HHcccC----cHHHHHHHHHHHHHHHHHHHhcCC
Confidence 999985 34567788888766666666554433222221222211 333222 244555556777777888887752
Q ss_pred -C-ceecC----------------CceEEEEEecCccccCCChhhHHHHHHHHHHhcCe---EEeCC------------C
Q 044773 169 -I-SCLKS----------------NAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKL---NISPG------------S 215 (289)
Q Consensus 169 -~-~~~~~----------------~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi---~v~pg------------~ 215 (289)
+ ++..| ..|-.+.+++.. . +-+..+++..++ .+.-| .
T Consensus 272 ~v~~v~yp~l~~~p~~~~~~~~~~g~gg~~sf~~~~---~-------~~~~~f~~~l~l~~~~~s~G~~~sl~~~~~~~~ 341 (390)
T PRK08064 272 KVQNVYYPGLQTHLGFDIQQSQATSAGAVLSFTLQS---E-------EAVRQFVSHVKLPVFAVSLGAVESILSYPAKMS 341 (390)
T ss_pred CcceEECCCCCCCccHHHHHHhCCCcceEEEEEECC---H-------HHHHHHHHhCCcceEcccCCCCcceeECCcccc
Confidence 1 11111 122244455532 1 123445556676 33333 1
Q ss_pred CCCC---------CCCCeEEEEEecCCHHHHHHHHHHHHHHHHHH
Q 044773 216 SCHC---------TEPGWFRVCFANMSEDTLKLSMQRLKAFVDSI 251 (289)
Q Consensus 216 ~f~~---------~~~~~~Ris~~~~~~e~l~~~l~~l~~~l~~~ 251 (289)
++.. ..++.+|+|++- |+.+++++.|.+++++.
T Consensus 342 h~~~~~~~~~~~gi~~~liR~SvGl---e~~~dli~dl~~Al~~~ 383 (390)
T PRK08064 342 HAAMPKEERDERGITDGLLRLSVGL---ENVDDLIADFEQALSYV 383 (390)
T ss_pred cccCCHHHHHhcCCCCCeEEEEecc---CCHHHHHHHHHHHHHhc
Confidence 1111 124789999996 56677777777777664
No 230
>PRK07503 methionine gamma-lyase; Provisional
Probab=99.62 E-value=1.3e-13 Score=126.05 Aligned_cols=130 Identities=16% Similarity=0.223 Sum_probs=86.6
Q ss_pred CCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEec
Q 044773 10 LKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVYS 89 (289)
Q Consensus 10 ~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~s 89 (289)
+++|+|++++|+||||.+.+ +++|.++|+++|+++|+|++|..... +. ++ .+ +.+++++|
T Consensus 149 ~~tklV~le~p~NPtG~~~d---i~~I~~la~~~gi~lIvD~a~a~~~~-~~---~l-~~------------g~Di~v~S 208 (403)
T PRK07503 149 DKTRMVYFETPANPNMRLVD---IAAVAEIAHGAGAKVVVDNTYCTPYL-QR---PL-EL------------GADLVVHS 208 (403)
T ss_pred ccCcEEEEeCCCCCCCeeeC---HHHHHHHHHHcCCEEEEECCCccccc-CC---ch-hh------------CCCEEEcc
Confidence 47899999999999999998 89999999999999999999985422 21 11 12 33488999
Q ss_pred CccccCCCC-ceEEEEEecCHHHHHHHHhc--ccc--CCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHH
Q 044773 90 LSKDLGLPG-FRVGAIYSNDDTVVAAATKM--SSF--GLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGL 164 (289)
Q Consensus 90 ~sK~~g~~G-~r~G~i~~~~~~~~~~~~~~--~~~--~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l 164 (289)
+||.++.+| .+.|+++.+ +.+.+.++.. ... ...+++....+...++. +..+.+...++.+.+.+.|
T Consensus 209 ~tK~l~g~gd~~gG~v~~~-~~l~~~l~~~~~~~~~g~~~s~~~a~l~l~~L~t-------l~~r~~~~~~na~~~a~~L 280 (403)
T PRK07503 209 ATKYLGGHGDITAGLVVGG-KALADRIRLEGLKDMTGAVMSPFDAFLLMRGLKT-------LALRMDRHCASAQAVAEWL 280 (403)
T ss_pred ccccccCCCceeEEEEEcC-HHHHHHHHhhhHHhCcCCCCCHHHHHHHHcCcch-------HHHHHHHHHHHHHHHHHHH
Confidence 999998655 788988864 4455544421 211 22444444444333332 2333333446666777777
Q ss_pred Hhc
Q 044773 165 EKA 167 (289)
Q Consensus 165 ~~~ 167 (289)
+++
T Consensus 281 ~~~ 283 (403)
T PRK07503 281 ARH 283 (403)
T ss_pred HhC
Confidence 765
No 231
>PRK07671 cystathionine beta-lyase; Provisional
Probab=99.61 E-value=1.4e-13 Score=124.84 Aligned_cols=131 Identities=16% Similarity=0.236 Sum_probs=90.1
Q ss_pred CCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEec
Q 044773 10 LKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVYS 89 (289)
Q Consensus 10 ~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~s 89 (289)
+++++|++++|+||||.+.+ +++|.++|+++|+++|+|++|....+ .. + .++ +.++++.|
T Consensus 133 ~~tklV~le~P~NPtg~~~d---l~~I~~la~~~g~~lvvD~a~~~~~~-~~---p-~~~------------g~Divv~S 192 (377)
T PRK07671 133 PNTKAIYVETPTNPLLKITD---IKKISTIAKEKGLLTIVDNTFMTPYW-QS---P-ISL------------GADIVLHS 192 (377)
T ss_pred CCCeEEEEECCCCCCCcccC---HHHHHHHHHHcCCEEEEECCCCcccc-CC---h-hhh------------CCeEEEec
Confidence 57899999999999999987 89999999999999999999975322 11 1 112 34589999
Q ss_pred CccccCCCC-ceEEEEEecCHHHHHHHHhccccC--CCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 044773 90 LSKDLGLPG-FRVGAIYSNDDTVVAAATKMSSFG--LVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEK 166 (289)
Q Consensus 90 ~sK~~g~~G-~r~G~i~~~~~~~~~~~~~~~~~~--~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 166 (289)
+||++|.++ .-.|+++++++.+.+.+....... ..++.... .++... +.+..+.+...++.+.+.+.|++
T Consensus 193 ~sK~l~G~~~~~~G~~v~~~~~l~~~~~~~~~~~g~~~~~~~a~---l~~~~l----~tl~~R~~~~~~na~~la~~L~~ 265 (377)
T PRK07671 193 ATKYLGGHSDVVAGLVVVNSPELAEDLHFVQNSTGGILGPQDSW---LLLRGL----KTLGIRMEEHETNSRAIAEFLNN 265 (377)
T ss_pred CcccccCCccceeEEEEeCcHHHHHHHHHHHHhhcCCCCHHHHH---HHHcCc----ChHHHHHHHHHHHHHHHHHHHHc
Confidence 999997443 456788887766666655544432 13333222 233322 12444566667888888888887
Q ss_pred c
Q 044773 167 A 167 (289)
Q Consensus 167 ~ 167 (289)
+
T Consensus 266 ~ 266 (377)
T PRK07671 266 H 266 (377)
T ss_pred C
Confidence 6
No 232
>PRK07678 aminotransferase; Validated
Probab=99.61 E-value=1.7e-13 Score=126.99 Aligned_cols=219 Identities=12% Similarity=0.086 Sum_probs=131.4
Q ss_pred CccEEEEeCC-CCCCccC-CCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEe
Q 044773 11 KVKGVLVTNP-SNPLGTT-MSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVY 88 (289)
Q Consensus 11 ~~~~i~l~~p-~NPtG~~-~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~ 88 (289)
++-+ ++..| +.-.|.+ .+.+.++++.++|++||+++|.||++.+++.+|..+. .. .. +...-+.
T Consensus 213 ~iAA-vi~EPiqg~gG~~~~~~~fl~~lr~lc~~~g~llI~DEV~tGfGRtG~~~~-~~-~~-----------gv~PDiv 278 (451)
T PRK07678 213 TIAA-VIMEPIITGGGVLMPPQDYMKAVKEICQKHGALLISDEVICGFGRTGKAFG-FM-NY-----------GVKPDII 278 (451)
T ss_pred ceEE-EEEccccCCCCcccCCHHHHHHHHHHHHHcCCEEEEeehhhcCCcCchhHH-HH-hc-----------CCCCCEE
Confidence 4555 45556 5445655 5778999999999999999999999998866664321 11 11 2222355
Q ss_pred cCccccCCCC-ceEEEEEecCHHHHHHHHh--------ccccCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHH
Q 044773 89 SLSKDLGLPG-FRVGAIYSNDDTVVAAATK--------MSSFGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRK 159 (289)
Q Consensus 89 s~sK~~g~~G-~r~G~i~~~~~~~~~~~~~--------~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 159 (289)
+++|.+| .| +++|.++++++ +.+.+.. ..+.+..|++...++.+.|+...- + ...++.++..++
T Consensus 279 t~gK~lg-gG~~Pi~av~~~~~-i~~~~~~~~~~~~~~h~~T~~gnp~~~aaa~a~l~~l~~-~----~~~~~~~~~g~~ 351 (451)
T PRK07678 279 TMAKGIT-SAYLPLSATAVKKE-IYEAFKGKGEYEHFRHVNTFGGNPAACALALKNLEIMEN-E----NLIERSAQLGEL 351 (451)
T ss_pred Eeecccc-cCCcceeEEEEcHH-HHHHHhccCcccccccCCCCCcCHHHHHHHHHHHHHHHh-C----CHHHHHHHHHHH
Confidence 7899998 67 79999999654 4444431 122333777777777777664321 1 223344444444
Q ss_pred HHHHHH----hcCCceecCCceEEEEEecCccccC-C--ChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEEec-
Q 044773 160 LVSGLE----KAGISCLKSNAGLFCWVDMRHLLSS-N--TFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFAN- 231 (289)
Q Consensus 160 l~~~l~----~~g~~~~~~~~g~~~~i~~~~~~~~-~--~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ris~~~- 231 (289)
|.+.|+ ++++......-|.+..+.+...... . .......+...++ +.||.+.+....-+.....+||++..
T Consensus 352 l~~~l~~~~~~~~~v~~vrg~Gl~~~i~~~~~~~~~~~~~~~~a~~i~~~l~-~~Gv~~~~~g~~v~~~~~~lrl~Ppl~ 430 (451)
T PRK07678 352 LLEQLKEELGEHPLVGDIRGKGLLVGIELVNDKETKEPADNDKVASVVAACK-EKGLIIGKNGDTVAGYNNVLTLSPPLV 430 (451)
T ss_pred HHHHHHHHHhcCCCEEEEEeeceEEEEEEecCCcccCcCchHHHHHHHHHHH-HCCcEEeecCccccCCCCEEEEECCCc
Confidence 444443 3343222222245555666432110 0 0111234666665 67999976322111223679999864
Q ss_pred CCHHHHHHHHHHHHHHHHHH
Q 044773 232 MSEDTLKLSMQRLKAFVDSI 251 (289)
Q Consensus 232 ~~~e~l~~~l~~l~~~l~~~ 251 (289)
++++|++++++++.+++++.
T Consensus 431 it~~eid~~~~~l~~~l~~~ 450 (451)
T PRK07678 431 ISSEEIAFIVGTLKTALERI 450 (451)
T ss_pred CCHHHHHHHHHHHHHHHHhc
Confidence 79999999999999988653
No 233
>TIGR01329 cysta_beta_ly_E cystathionine beta-lyase, eukaryotic. This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys.
Probab=99.60 E-value=1.2e-13 Score=125.45 Aligned_cols=211 Identities=14% Similarity=0.122 Sum_probs=130.0
Q ss_pred hHHHhhhCCCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCC
Q 044773 2 YQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVW 81 (289)
Q Consensus 2 l~~~~~~~~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 81 (289)
++++++ +++|+|++++|+||+|.+.+ +++|+++|+++|+++|+|++|... ....++ ++
T Consensus 124 le~~i~--~~tklv~le~psnptg~v~d---l~~I~~la~~~g~~vivD~a~~~~----~~~~~l-~~------------ 181 (378)
T TIGR01329 124 VKAALG--PKTKLVLLESPTNPLQKIVD---IRKISEMAHAQNALVVVDNTMMSP----LLCNPL-EL------------ 181 (378)
T ss_pred HHHhcC--cCceEEEEECCCCCCCeeec---HHHHHHHHHHcCCEEEEECCCccc----ccCChh-hc------------
Confidence 344443 57999999999999999998 999999999999999999998532 111221 22
Q ss_pred CceEEEecCccccCCC-CceEEEEEecCHHHHHHHHhccc-cC-CCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHH
Q 044773 82 NRVHIVYSLSKDLGLP-GFRVGAIYSNDDTVVAAATKMSS-FG-LVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHR 158 (289)
Q Consensus 82 ~~~i~i~s~sK~~g~~-G~r~G~i~~~~~~~~~~~~~~~~-~~-~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 158 (289)
+-+++++|++|.++.+ ++..|+++++++.+.+.+..... .+ ..++.....+..-++. +..+.+.-.++..
T Consensus 182 g~Di~v~S~tK~l~G~~~~~~G~v~~~~~~~~~~~~~~~~~~G~~~~~~~a~l~~~~l~t-------l~~R~e~~~~na~ 254 (378)
T TIGR01329 182 GADIVYHSATKFLAGHSDVMAGVLAVKGEEIAKKVYFLQNSTGSGLAPFDCWLLLRGIKT-------LAIRIEKQQENAR 254 (378)
T ss_pred CCcEEEEecceeccCCccceeEEEEeCcHHHHHHHHHHHHhcCCcCCHHHHHHHHccCCC-------HHHHHHHHHHHHH
Confidence 3458999999999643 57899999977666554544332 22 1333333222222222 3334444455555
Q ss_pred HHHHHHHhc-CC-ceec----------------CCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCC-
Q 044773 159 KLVSGLEKA-GI-SCLK----------------SNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHC- 219 (289)
Q Consensus 159 ~l~~~l~~~-g~-~~~~----------------~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~- 219 (289)
.+.+.|+++ .+ ++.. ...|-.+.+++.. . ....+++..| +..++.+.-|.....
T Consensus 255 ~la~~L~~~~~v~~v~~p~l~~~p~~~l~~~~~~g~~~~~sf~~~~-~-----~~~~~~~~~L-~~~~i~~s~G~~~sl~ 327 (378)
T TIGR01329 255 AIAMFLSTHPRVKKVRYAGLPSHPGFHLHFSQAKGAGSVLSFETGS-V-----ALSKRLVEAT-KLFSITVSFGSVNSLI 327 (378)
T ss_pred HHHHHHHhCCCccEEECCCCCCCccHHHHHHhCCCcceEEEEEECC-H-----HHHHHHHHhC-cCcccccCCCCCCcee
Confidence 566666654 11 1111 0112244455632 1 2234566666 566777666654431
Q ss_pred --------------------CCCCeEEEEEecCCHHHHHHHHHHHHHHHHHH
Q 044773 220 --------------------TEPGWFRVCFANMSEDTLKLSMQRLKAFVDSI 251 (289)
Q Consensus 220 --------------------~~~~~~Ris~~~~~~e~l~~~l~~l~~~l~~~ 251 (289)
..++.+|||++. |+.+.+++.|.+++++.
T Consensus 328 ~~p~~~~~~~~~~~~~~~~gi~~~liR~svGl---E~~~dl~~dl~~al~~~ 376 (378)
T TIGR01329 328 SMPCFMSHASIPAEVREERGLPEDLVRLSVGI---EDVDDLISDLDIAFVTA 376 (378)
T ss_pred eCCCccccccCCHHHHHhcCCCCCeEEEEecc---CCHHHHHHHHHHHHHhc
Confidence 114689999997 77888888888887743
No 234
>TIGR03235 DNA_S_dndA cysteine desulfurase DndA. This model describes DndA, a protein related to IscS and part of a larger family of cysteine desulfurases. It is encoded, typically, divergently from a conserved, sparsely distributed operon for sulfur modification of DNA. This modification system is designated dnd, after the phenotype of DNA degradation during electrophoresis. The system is sporadically distributed in bacteria, much like some restriction enzyme operons. DndB is described as a putative ATPase.
Probab=99.60 E-value=7.6e-15 Score=132.14 Aligned_cols=197 Identities=14% Similarity=0.091 Sum_probs=130.5
Q ss_pred CCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEec
Q 044773 10 LKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVYS 89 (289)
Q Consensus 10 ~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~s 89 (289)
+++++|++++|+||||.+++ +++|.++|+++|+++++|++|+. +....++. .++.++++.|
T Consensus 137 ~~~~lv~~~~~~n~tG~~~~---~~~I~~l~~~~~~~~ivD~a~~~----g~~~~~~~------------~~~~D~~~~s 197 (353)
T TIGR03235 137 PDTLLVSIMHVNNETGSIQP---IREIAEVLEAHEAFFHVDAAQVV----GKITVDLS------------ADRIDLISCS 197 (353)
T ss_pred CCCEEEEEEcccCCceeccC---HHHHHHHHHHcCCEEEEEchhhc----CCcccccc------------ccCCCEEEee
Confidence 46899999999999999999 89999999999999999999873 22222221 2356688889
Q ss_pred CccccCCCCceEEEEEecCHHHHHH-HHh---------ccccCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHH
Q 044773 90 LSKDLGLPGFRVGAIYSNDDTVVAA-ATK---------MSSFGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRK 159 (289)
Q Consensus 90 ~sK~~g~~G~r~G~i~~~~~~~~~~-~~~---------~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 159 (289)
.+|.+|.+| +|+++++++..... ..- ....++.+.....++..+++. +....++..++++++.++
T Consensus 198 ~~K~~gp~g--~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~---~~~~~~~~~~~~~~l~~~ 272 (353)
T TIGR03235 198 GHKIYGPKG--IGALVIRKRGKPKAPLKPIMFGGGQERGLRPGTLPVHLIVGMGEAAEI---ARRNAQAWEVKLRAMRNQ 272 (353)
T ss_pred hhhcCCCCc--eEEEEEccCcccccccCceeeCCCCcCccccCCCChHHHHHHHHHHHH---HHhhHHHHHHHHHHHHHH
Confidence 999877445 89998876532111 110 011223444555556655553 234567788899999999
Q ss_pred HHHHHHhcCCceecCCce---EEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCCC--CCeEEEEEecCCH
Q 044773 160 LVSGLEKAGISCLKSNAG---LFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTE--PGWFRVCFANMSE 234 (289)
Q Consensus 160 l~~~l~~~g~~~~~~~~g---~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~--~~~~Ris~~~~~~ 234 (289)
+++.|.+.|+++..+... .+..+.++. . +..++...| ++ +|.+.+|..|+... +.++|.+++. ++
T Consensus 273 l~~~l~~~g~~~~~~~~~~~~~i~~~~~~~-~------~~~~v~~~L-~~-~i~v~~g~~~~~~~~~~~~~l~~~g~-~~ 342 (353)
T TIGR03235 273 LRDALQTLGVKLNGDPAETIPHILNFSIDG-V------NSEALIVNL-RA-DAAVSTGSACSSSKYEPSHVLQAMGL-DT 342 (353)
T ss_pred HHHHhccCCeEEeCCcccccCCEEEEEeCC-c------CHHHHHHHH-hC-CeEEEchhhcCCCCCCCCHHHHHcCC-CH
Confidence 999998888887643321 123233332 1 113455555 45 89999999997643 3478888884 66
Q ss_pred HHHHHH
Q 044773 235 DTLKLS 240 (289)
Q Consensus 235 e~l~~~ 240 (289)
+++..+
T Consensus 343 ~~~~~~ 348 (353)
T TIGR03235 343 DRARGA 348 (353)
T ss_pred HHhCcc
Confidence 655543
No 235
>PRK05769 4-aminobutyrate aminotransferase; Provisional
Probab=99.59 E-value=3.4e-13 Score=124.65 Aligned_cols=211 Identities=14% Similarity=0.120 Sum_probs=132.1
Q ss_pred CccEEEEeCC-CCCCccC-CCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEe
Q 044773 11 KVKGVLVTNP-SNPLGTT-MSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVY 88 (289)
Q Consensus 11 ~~~~i~l~~p-~NPtG~~-~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~ 88 (289)
++.+ ++..| ..-.|.. .+.+.+++|.++|+++|+++|+||++.+++..|..+ ....+ + -..| +.
T Consensus 221 ~iaa-vi~Epv~g~~G~~~~~~~~l~~l~~l~~~~g~lli~DEv~tG~gr~G~~~-a~~~~-g-------v~pD----iv 286 (441)
T PRK05769 221 EVAA-IIVEPIQGEGGYVVPPKNFFKELRKLADKYGILLIDDEVQTGMGRTGKMF-AIEHF-G-------VEPD----II 286 (441)
T ss_pred ceEE-EEECcccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhCCCccccee-hhhcc-C-------CCCC----EE
Confidence 4555 45556 5556764 467899999999999999999999999876555432 11111 1 0112 23
Q ss_pred cCccccCCCCceEEEEEecCHHHHHHHHh-ccccCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 044773 89 SLSKDLGLPGFRVGAIYSNDDTVVAAATK-MSSFGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEKA 167 (289)
Q Consensus 89 s~sK~~g~~G~r~G~i~~~~~~~~~~~~~-~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 167 (289)
+|||.+| .|+++|+++++++. .+.... ....+..+++.+.++.+.|+.. ++ ...++++++.++|.+.|+++
T Consensus 287 t~~K~l~-~G~p~gav~~~~~i-~~~~~~~~~~T~~g~p~~~aaa~a~L~~l---~~---~~~~~~~~~g~~l~~~L~~l 358 (441)
T PRK05769 287 TLAKAIA-GGLPLGAVIGRAEL-MFLPPGSHANTFGGNPVAAAAALATLEEL---EE---GLLENAQKLGEYLRKELKEL 358 (441)
T ss_pred EEccccc-CCcccEEEEEehhh-hhcCCCCCCCCCCcCHHHHHHHHHHHHHH---HH---HHHHHHHHHHHHHHHHHHHH
Confidence 6899998 88999999996544 333321 1222335777777766666532 22 45566667777777777654
Q ss_pred ----CCceecCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEEec-CCHHHHHHHHH
Q 044773 168 ----GISCLKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFAN-MSEDTLKLSMQ 242 (289)
Q Consensus 168 ----g~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ris~~~-~~~e~l~~~l~ 242 (289)
++......-|.++.+.+..............+...++ +.||.+.|. +...+|++++. +++++++++++
T Consensus 359 ~~~~~~~~~vrg~G~~~~i~~~~~~~~~~~~~~~~~~~~~~-~~Gil~~~~------~~~~lr~~p~l~~t~~~id~~~~ 431 (441)
T PRK05769 359 KEKYEFIGDVRGLGLMIGVELVKDRKEPDPKLRDKVLYEAF-KRGLLLLGA------GKSAIRIIPPLIITEEEADIGLE 431 (441)
T ss_pred HHhCCCeeeeecceEEEEEEeccCCccccHHHHHHHHHHHH-hCCcEEecC------CCCEEEEeCCCCCCHHHHHHHHH
Confidence 2211222225566566643211111111234566665 679998753 23579999864 79999999999
Q ss_pred HHHHHHHH
Q 044773 243 RLKAFVDS 250 (289)
Q Consensus 243 ~l~~~l~~ 250 (289)
++.+++.+
T Consensus 432 ~l~~~l~~ 439 (441)
T PRK05769 432 ILEEAIKE 439 (441)
T ss_pred HHHHHHHH
Confidence 99998865
No 236
>PRK11522 putrescine--2-oxoglutarate aminotransferase; Provisional
Probab=99.59 E-value=3.4e-13 Score=125.02 Aligned_cols=212 Identities=13% Similarity=0.119 Sum_probs=135.1
Q ss_pred CccEEEEeCC-CCCCccC-CCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEe
Q 044773 11 KVKGVLVTNP-SNPLGTT-MSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVY 88 (289)
Q Consensus 11 ~~~~i~l~~p-~NPtG~~-~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~ 88 (289)
++.+ ++..| ..-.|.. .+++.++++.++|++||+++|+||++.+++.+|..+. .+.. +...-+.
T Consensus 231 ~iAa-vIvEpv~g~~G~~~pp~~yl~~lr~lc~~~g~llI~DEV~tG~GRtG~~~a--~e~~-----------gv~PDiv 296 (459)
T PRK11522 231 DVAA-VILEPIQGEGGVILPPEGYLTAVRKLCDEFGALLILDEVQTGMGRTGKMFA--CEHE-----------NVQPDIL 296 (459)
T ss_pred cEEE-EEEecccCCCCCccCCHHHHHHHHHHHHHcCCEEEeccceecCCccchhhh--hhcc-----------CCCCCEE
Confidence 3445 44555 6556775 4677999999999999999999999988755555321 1111 1112245
Q ss_pred cCccccCCCC-ceEEEEEecCHHHHHHHH-h---ccccCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHH
Q 044773 89 SLSKDLGLPG-FRVGAIYSNDDTVVAAAT-K---MSSFGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSG 163 (289)
Q Consensus 89 s~sK~~g~~G-~r~G~i~~~~~~~~~~~~-~---~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~ 163 (289)
+++|.+| .| +++|.++++++ +.+.+. . ..+.+..|++...++.+.|+...- ....++++++.++|.+.
T Consensus 297 t~gK~lg-gG~~Pigav~~~~~-i~~~~~~~~~~~~~T~~gnp~~~Aaala~L~~i~~-----~~l~~~~~~~g~~l~~~ 369 (459)
T PRK11522 297 CLAKALG-GGVMPIGATIATEE-VFSVLFDNPFLHTTTFGGNPLACAAALATINVLLE-----QNLPAQAEQKGDYLLDG 369 (459)
T ss_pred Eechhhh-CCCccceeEEEcHH-HHHHhccCCcccCCCCCCCHHHHHHHHHHHHHHhc-----chHHHHHHHHHHHHHHH
Confidence 8999998 78 79999999644 444332 1 122233577777776666654221 12345566666666666
Q ss_pred HHhc--CCc-e--ecCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEEec-CCHHHH
Q 044773 164 LEKA--GIS-C--LKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFAN-MSEDTL 237 (289)
Q Consensus 164 l~~~--g~~-~--~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ris~~~-~~~e~l 237 (289)
|+++ ... + ....-|.++.+.+.... ....+...++ ++||.+.+.. .+...+|+.++. ++++++
T Consensus 370 L~~l~~~~~~~i~~VrG~Gl~~giel~~~~------~~~~i~~~l~-~~Gvl~~~~~----~~~~~lr~~Ppl~~t~~~i 438 (459)
T PRK11522 370 FRQLAREYPDLVQEARGKGMLMAIEFVDNE------IGYNFASEMF-RQRVLVAGTL----NNAKTIRIEPPLTLTIEQC 438 (459)
T ss_pred HHHHHHhCCCceeeEEeceeEEEEEecCch------HHHHHHHHHH-HCCeEEEecC----CCCCEEEEECCccCCHHHH
Confidence 6654 121 1 11123566667775421 1234666666 5799997642 124689999954 799999
Q ss_pred HHHHHHHHHHHHHHHHh
Q 044773 238 KLSMQRLKAFVDSITTT 254 (289)
Q Consensus 238 ~~~l~~l~~~l~~~~~~ 254 (289)
+++++++.+++++..+.
T Consensus 439 d~~l~~l~~~l~~~~~~ 455 (459)
T PRK11522 439 EQVLKAARKALAAMRVS 455 (459)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 99999999999887653
No 237
>PRK05639 4-aminobutyrate aminotransferase; Provisional
Probab=99.58 E-value=3.6e-13 Score=124.82 Aligned_cols=216 Identities=13% Similarity=0.099 Sum_probs=130.5
Q ss_pred CccEEEEeCC-CCCCcc-CCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEe
Q 044773 11 KVKGVLVTNP-SNPLGT-TMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVY 88 (289)
Q Consensus 11 ~~~~i~l~~p-~NPtG~-~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~ 88 (289)
++-+ +|..| +.-.|. ..+.+.+++|.++|++||+++|+||++.+++.+|..+.. +.. +...-+.
T Consensus 222 ~iAA-vI~EPiqg~gG~~~p~~~yl~~l~~lc~~~g~llI~DEv~tG~GrtG~~~a~--~~~-----------gv~PDiv 287 (457)
T PRK05639 222 EVAA-LFAEPIQGDAGIVVPPENFFKELKKLLDEHGILLVMDEVQTGIGRTGKWFAS--EWF-----------EVKPDLI 287 (457)
T ss_pred ceEE-EEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhccCcCchHHHH--Hhc-----------CCCCCEE
Confidence 5556 44456 555676 457889999999999999999999999987555543211 111 1112244
Q ss_pred cCccccCCCCceEEEEEecCHHHHHHHHh-ccccCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 044773 89 SLSKDLGLPGFRVGAIYSNDDTVVAAATK-MSSFGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEKA 167 (289)
Q Consensus 89 s~sK~~g~~G~r~G~i~~~~~~~~~~~~~-~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 167 (289)
+++|.+| .|+++|+++++++ +.+.... ....+..|++...++.+.|+...- ....++.+++.++|.+.|+++
T Consensus 288 ~~gK~l~-gG~pi~av~~~~~-i~~~~~~~~~~T~~g~p~~~aaa~a~l~~l~~-----~~l~~~~~~~g~~l~~~L~~l 360 (457)
T PRK05639 288 IFGKGVA-SGMGLSGVIGRKE-LMDLTSGSALLTPAANPVISAAAEATLEIIEE-----ENLLKNALKVGEFIKKRLLEM 360 (457)
T ss_pred Eechhhc-CCCcceeEEehHH-HHhhcCCCcccCCCcCHHHHHHHHHHHHHHHH-----ccHHHHHHHHHHHHHHHHHHH
Confidence 4899998 7899999999544 4442211 111223666666665555553221 122344444555555555542
Q ss_pred ----CCceecCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEEec-CCHHHHHHHHH
Q 044773 168 ----GISCLKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFAN-MSEDTLKLSMQ 242 (289)
Q Consensus 168 ----g~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ris~~~-~~~e~l~~~l~ 242 (289)
++......-|.++.+.+..............+...++ ++|+.+.+.. .....+||.+.. +++++++++++
T Consensus 361 ~~~~~~~~~VrG~Gl~~gve~~~~~~~~~~~~~~~~~~~~~-~~Gv~~~~~g----~~~~~lr~~Ppl~it~~~id~~~~ 435 (457)
T PRK05639 361 KESFEVIGDVRGKGLMIGVEIVKENGKPDPELTGKICWRAF-ELGLILPSYG----MFGNVIRITPPLVITKEIAEKGLE 435 (457)
T ss_pred HHhCCCEEeeccceeEEEEEEecCCCCCCHHHHHHHHHHHH-hCCeEEeecC----CCCCEEEEeCCCccCHHHHHHHHH
Confidence 3322222335566566543211111112234666666 6799997642 123689999964 79999999999
Q ss_pred HHHHHHHHHH
Q 044773 243 RLKAFVDSIT 252 (289)
Q Consensus 243 ~l~~~l~~~~ 252 (289)
++.++++...
T Consensus 436 ~l~~~l~~~~ 445 (457)
T PRK05639 436 IMERAIKDAL 445 (457)
T ss_pred HHHHHHHHHH
Confidence 9999998753
No 238
>TIGR01814 kynureninase kynureninase. This model describes kynureninase, a pyridoxal-phosphate enzyme. Kynurinine is a Trp breakdown product and a precursor for NAD. In Chlamydia psittaci, an obligate intracellular pathogen, kynureninase makes anthranilate, a Trp precursor, from kynurenine. This counters the tryptophan hydrolysis that occurs in the host cell in response to the pathogen.
Probab=99.57 E-value=2.9e-13 Score=124.16 Aligned_cols=201 Identities=11% Similarity=0.059 Sum_probs=129.3
Q ss_pred CCCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEe
Q 044773 9 HLKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVY 88 (289)
Q Consensus 9 ~~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~ 88 (289)
++++++|++++++|.||.+.+ +++|.++|+++|+++++|.+++. |..+.++. ..+.++++.
T Consensus 169 ~~~t~lv~~~~v~~~tG~~~~---~~~i~~~~~~~g~~~~vD~aq~~----G~~~id~~------------~~gvD~~~~ 229 (406)
T TIGR01814 169 GDDIAVILLSGVQYYTGQLFD---MAAITRAAHAKGALVGFDLAHAV----GNVPLDLH------------DWGVDFACW 229 (406)
T ss_pred CCCeEEEEEeccccccceecC---HHHHHHHHHHcCCEEEEEccccc----CCcccccc------------cCCCCEEEE
Confidence 367999999999999999999 99999999999999999999984 33223322 235679999
Q ss_pred cCccccC-CCCceEEEEEecCHHHHHHHHhcc------------------------ccCCCChHHHHHHHHHhCCchHHH
Q 044773 89 SLSKDLG-LPGFRVGAIYSNDDTVVAAATKMS------------------------SFGLVSSQTQYLLSALLSDKKFAQ 143 (289)
Q Consensus 89 s~sK~~g-~~G~r~G~i~~~~~~~~~~~~~~~------------------------~~~~~~~~~q~~~~~~l~~~~~~~ 143 (289)
|.+|.++ .|| .|..+.+ +.......... ..++.+.+...++..+++... .
T Consensus 230 s~hK~l~g~pG--~~l~v~~-~~~~~~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~~GT~~~~~~~~l~~al~~~~--~ 304 (406)
T TIGR01814 230 CTYKYLNAGPG--AGAFVHE-KHAHTERPRLAGWWGHARPTRFKMDNTLGLIPCGFRISNPPILSVAALRGSLDIFD--Q 304 (406)
T ss_pred cCccccCCCCC--eEEEEeh-hhhhhcCCCCCcccCCCCccccccccccCCCccceeeCCccHHHHHHHHHHHHHHH--h
Confidence 9999874 355 3333333 22222111000 012233345455555554321 1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhc-----CCceecCCc----eEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCC
Q 044773 144 NYISENKKRLKQRHRKLVSGLEKA-----GISCLKSNA----GLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPG 214 (289)
Q Consensus 144 ~~~~~~~~~~~~~~~~l~~~l~~~-----g~~~~~~~~----g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg 214 (289)
.-.++.+++.++..+++.+.|.+. |+++..+.. +..+.+.++ .+. .++...|. ++||.+...
T Consensus 305 ~g~~~i~~~~~~l~~~l~~~l~~~~~~~~~~~i~~~~~~~~r~~~v~~~~~--~~~------~~~~~~L~-~~gi~v~~~ 375 (406)
T TIGR01814 305 AGMEALRKKSLLLTDYLEELIKARCGGPPVLTIITPRDHAQRGCQLSLTHP--VPG------KAVFQALI-KRGVIGDKR 375 (406)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHhhcCCCCceEEeCCCChhhcCCeEEEEec--CCH------HHHHHHHH-HCCEEEecc
Confidence 124667778888888888888764 366655421 223344554 111 34666665 669987532
Q ss_pred CCCCCCCCCeEEEEE-e-cCCHHHHHHHHHHHHHHH
Q 044773 215 SSCHCTEPGWFRVCF-A-NMSEDTLKLSMQRLKAFV 248 (289)
Q Consensus 215 ~~f~~~~~~~~Ris~-~-~~~~e~l~~~l~~l~~~l 248 (289)
.++.+|+|+ . .++++|++.+++.|++++
T Consensus 376 ------~~~~iRiS~~~~~nt~~did~l~~~l~~~~ 405 (406)
T TIGR01814 376 ------EPSVIRVAPVPLYNTFVDVYDAVNVLEEIL 405 (406)
T ss_pred ------CCCeEEEechhccCCHHHHHHHHHHHHHHh
Confidence 235899998 4 479999999999998764
No 239
>PRK08248 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=99.57 E-value=8.4e-13 Score=121.53 Aligned_cols=83 Identities=23% Similarity=0.312 Sum_probs=66.3
Q ss_pred HHHhhhCCCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCC
Q 044773 3 QLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWN 82 (289)
Q Consensus 3 ~~~~~~~~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 82 (289)
+++++ +++++|++++|+||||.+++ +++|.++|+++|+++|+|++|... ....++ + .+
T Consensus 143 ~~ai~--~~tklV~l~sp~NPtG~v~d---i~~I~~la~~~gi~vIvD~t~a~~----~~~~pl-~------------~g 200 (431)
T PRK08248 143 EAAIT--DKTKALFAETIGNPKGDVLD---IEAVAAIAHEHGIPLIVDNTFASP----YLLRPI-E------------HG 200 (431)
T ss_pred HHhcC--CCCeEEEEECCCCCCCcccC---HHHHHHHHHHcCCEEEEeCCCCcc----ccCChh-H------------cC
Confidence 44443 46899999999999999999 889999999999999999998631 111111 2 25
Q ss_pred ceEEEecCccccCCCCceEEEEEec
Q 044773 83 RVHIVYSLSKDLGLPGFRVGAIYSN 107 (289)
Q Consensus 83 ~~i~i~s~sK~~g~~G~r~G~i~~~ 107 (289)
.++++.|++|.+|.+|.++|++++.
T Consensus 201 aDivv~S~tK~lgg~g~~~Gg~v~~ 225 (431)
T PRK08248 201 ADIVVHSATKFIGGHGTSIGGVIVD 225 (431)
T ss_pred CCEEEEcCccccCCCCCceEEEEEe
Confidence 6689999999999899999998874
No 240
>PRK05968 hypothetical protein; Provisional
Probab=99.57 E-value=3.9e-13 Score=122.45 Aligned_cols=203 Identities=13% Similarity=0.101 Sum_probs=124.8
Q ss_pred CCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEec
Q 044773 10 LKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVYS 89 (289)
Q Consensus 10 ~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~s 89 (289)
+++|+|++++|+||++ +..++++|.++|+++|+.+|+|++|....+. . ++ .+ +.++++.|
T Consensus 146 ~~tklV~ie~pt~~~~---~~~dl~~i~~la~~~gi~vivD~a~a~~~~~-~---p~-~~------------g~Divv~S 205 (389)
T PRK05968 146 PGAKLLYLESPTSWVF---ELQDVAALAALAKRHGVVTMIDNSWASPVFQ-R---PI-TL------------GVDLVIHS 205 (389)
T ss_pred ccCCEEEEECCCCCCC---cHHHHHHHHHHHHHcCCEEEEECCCcchhcc-C---ch-hc------------CCcEEEee
Confidence 4689999998877764 5567999999999999999999999754221 1 11 11 33578889
Q ss_pred CccccCCCC-ceEEEEEecCHHHHHHHHhc-c-cc-CCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044773 90 LSKDLGLPG-FRVGAIYSNDDTVVAAATKM-S-SF-GLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLE 165 (289)
Q Consensus 90 ~sK~~g~~G-~r~G~i~~~~~~~~~~~~~~-~-~~-~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 165 (289)
+||.++.+| .+.|+++++++ +.+.+... . .. ...+++....+...++. +..+.+...++.+.+.+.|+
T Consensus 206 ~tK~l~g~~~~~gG~i~~~~~-~~~~l~~~~~~~~g~~~~~~~A~~~l~~L~t-------l~~r~~~~~~~a~~la~~L~ 277 (389)
T PRK05968 206 ASKYLGGHSDTVAGVVAGSKE-HIARINAEAYPYLGAKLSPFEAWLLLRGLRT-------LPLRMKAHEASALEIARRLK 277 (389)
T ss_pred ccccccCCCCeEEEEEEECHH-HHHHHHHHHHHhCCCCCChHHHHHHHcccCc-------HHHHHHHHHHHHHHHHHHHH
Confidence 999998655 67899888554 44433321 1 12 22455555554444443 23344444555677888888
Q ss_pred hc-CCceec-C-----------CceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCC-------------
Q 044773 166 KA-GISCLK-S-----------NAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHC------------- 219 (289)
Q Consensus 166 ~~-g~~~~~-~-----------~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~------------- 219 (289)
++ ++.... | ..|-.+.+++... .+..+++..| +..++.+.-|..+..
T Consensus 278 ~~p~v~~v~~p~l~~~~~~~~~g~g~~~sf~~~~~------~~~~~f~~~L-~~~~~~~s~G~~~slv~p~~~~~~~~~~ 350 (389)
T PRK05968 278 AHPVVERVCHPALANHPPAGLSGTSGLFSFIFREG------IDVRAFADAL-KLFRLGVSWGGHESLVVPAEVVLQQKAQ 350 (389)
T ss_pred hCCCccEEECCCCCCChHHhCCCCceEEEEEECCH------HHHHHHHHhC-CccEEecCCCCCCceeeeCcccccccCC
Confidence 77 453322 2 1122333555421 2234566665 355666655554440
Q ss_pred --------CCCCeEEEEEecCCHHHHHHHHHHHHHHHHH
Q 044773 220 --------TEPGWFRVCFANMSEDTLKLSMQRLKAFVDS 250 (289)
Q Consensus 220 --------~~~~~~Ris~~~~~~e~l~~~l~~l~~~l~~ 250 (289)
..++.+|+|++. |+.+.+++.|++++++
T Consensus 351 ~~~~~~~gi~~~liR~SvGl---E~~~dl~~dl~~al~~ 386 (389)
T PRK05968 351 PNSAARFGVSPRSVRLHVGL---EGTEALWADLEQALAA 386 (389)
T ss_pred HHHHHhcCCCCCeEEEEecc---CCHHHHHHHHHHHHHH
Confidence 124789999997 6677777777777764
No 241
>PRK05939 hypothetical protein; Provisional
Probab=99.57 E-value=5.3e-13 Score=121.72 Aligned_cols=78 Identities=18% Similarity=0.158 Sum_probs=63.9
Q ss_pred CCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEec
Q 044773 10 LKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVYS 89 (289)
Q Consensus 10 ~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~s 89 (289)
+++++|++++|+||||.+.+ +++|+++|+++|+++|+|++|... ... ... ..+.++++.|
T Consensus 130 ~~tklV~vesp~NptG~v~d---l~~I~~la~~~gi~livD~t~a~~----~~~-~~~------------~~gaDivv~S 189 (397)
T PRK05939 130 PNTRMVFVETIANPGTQVAD---LAGIGALCRERGLLYVVDNTMTSP----WLF-RPK------------DVGASLVINS 189 (397)
T ss_pred CCCeEEEEECCCCCCCCHHh---HHHHHHHHHHcCCEEEEECCcccc----ccc-Ccc------------ccCCEEEEec
Confidence 57999999999999999855 999999999999999999998632 111 100 2256799999
Q ss_pred CccccCCCCceEEEEEec
Q 044773 90 LSKDLGLPGFRVGAIYSN 107 (289)
Q Consensus 90 ~sK~~g~~G~r~G~i~~~ 107 (289)
+||.++.+|.++|+++++
T Consensus 190 ~sK~~~g~g~~igg~v~~ 207 (397)
T PRK05939 190 LSKYIAGHGNALGGAVTD 207 (397)
T ss_pred CeecccCCCCeEEEEEec
Confidence 999998889999998884
No 242
>PRK07050 cystathionine beta-lyase; Provisional
Probab=99.57 E-value=5.4e-13 Score=121.62 Aligned_cols=206 Identities=15% Similarity=0.103 Sum_probs=123.1
Q ss_pred CCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEec
Q 044773 10 LKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVYS 89 (289)
Q Consensus 10 ~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~s 89 (289)
+++|+|++++|+||+|. ..++++|+++|+++|+++|+|++|....+ ..+ + ..+.++++.|
T Consensus 149 ~~tklV~le~p~Np~~~---~~di~~I~~ia~~~gi~livD~a~a~~~~----~~~---l----------~~GaDi~v~S 208 (394)
T PRK07050 149 PNTRLIWLEAPGSVTME---VPDVPAITAAARARGVVTAIDNTYSAGLA----FKP---F----------EHGVDISVQA 208 (394)
T ss_pred CCCeEEEEECCCCCCcc---HhhHHHHHHHHHHcCCEEEEECCcccccc----cCH---H----------HcCCeEEEEE
Confidence 57999999999999965 45599999999999999999999975321 111 1 1244688999
Q ss_pred CccccC-CCCceEEEEEecCHHHHHHHHhcccc-C-CCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 044773 90 LSKDLG-LPGFRVGAIYSNDDTVVAAATKMSSF-G-LVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEK 166 (289)
Q Consensus 90 ~sK~~g-~~G~r~G~i~~~~~~~~~~~~~~~~~-~-~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 166 (289)
++|.++ ..+.+.|++++.++.+.+.+...... + ..++.....+...++. +..+.++..++...+.+.|++
T Consensus 209 ~tK~~~g~~~~~gG~v~~~~~~~~~~~~~~~~~~G~~~~~~~a~l~lr~l~t-------l~~Rl~~~~~~a~~la~~L~~ 281 (394)
T PRK07050 209 LTKYQSGGSDVLMGATITADAELHAKLKLARMRLGIGVSADDCSLVLRGLPS-------LQVRLAAHDRSALEVAEWLKA 281 (394)
T ss_pred CCceecCCCCeeEEEEEECCHHHHHHHHHHHHhcCCCCCHHHHHHHHcCCCc-------HHHHHHHHHHHHHHHHHHHHh
Confidence 999996 34577899998777776655544332 2 2444444333333333 233445555566677777776
Q ss_pred c-CCc-ee-----------------cCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCC--------
Q 044773 167 A-GIS-CL-----------------KSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHC-------- 219 (289)
Q Consensus 167 ~-g~~-~~-----------------~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~-------- 219 (289)
+ .+. +. ...++++ .+.+..... ..+..++...| +..++.+.=|.....
T Consensus 282 ~p~v~~v~~p~l~~~p~~~~~~~~~~~~g~~~-s~~l~~~~~---~~~~~~~~~~l-~~~~~~~s~G~~~sl~~~~~~~~ 356 (394)
T PRK07050 282 RPEIATVLHPALPDCPGHAFWMRDFTGAGGLF-SVVFDERYS---PAQVDAFVEAL-ELFAIGWSWGGACSLAMPYDVAS 356 (394)
T ss_pred CCCccEEECCCCCCCccHHHHHHhCCCCceEE-EEEECCCCC---HHHHHHHHHcC-CCCeeccccCCccceEeeCcccc
Confidence 5 221 11 1123433 345542211 12233455444 344443322221110
Q ss_pred -------CCCCeEEEEEecCCHHHHHHHHHHHHHHHHH
Q 044773 220 -------TEPGWFRVCFANMSEDTLKLSMQRLKAFVDS 250 (289)
Q Consensus 220 -------~~~~~~Ris~~~~~~e~l~~~l~~l~~~l~~ 250 (289)
...+.+|||++. |+.+.+++.|.++++.
T Consensus 357 ~~~~~~~~~~~~iR~svGl---E~~~dl~~dl~~al~~ 391 (394)
T PRK07050 357 MRTAKWPHRGTLVRLYIGL---EDEADLIADLEQALEA 391 (394)
T ss_pred cchhhcCCCCCEEEEEeCc---CCHHHHHHHHHHHHHH
Confidence 123689999997 6677777777777654
No 243
>PRK06082 4-aminobutyrate aminotransferase; Provisional
Probab=99.57 E-value=6.2e-13 Score=123.40 Aligned_cols=224 Identities=13% Similarity=0.103 Sum_probs=136.4
Q ss_pred HHHhhhCCCccEEEEeCC-CCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCC
Q 044773 3 QLAQKRHLKVKGVLVTNP-SNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVW 81 (289)
Q Consensus 3 ~~~~~~~~~~~~i~l~~p-~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 81 (289)
++.+....++.+ ++..| .+..+.+.+.+.+++|.++|+++|+++|.||++.+++.+|..+.. +..
T Consensus 221 ~~~i~~~~~vAa-vIvEPv~g~g~~~~~~~yl~~lr~lc~~~g~llI~DEV~tG~GRtG~~fa~--e~~----------- 286 (459)
T PRK06082 221 EYVIEKEGGIGA-FIAEAVRNTDVQVPSKAYWKRVREICDKHNVLLIIDEIPNGMGRTGEWFTH--QAY----------- 286 (459)
T ss_pred HHHHhcCCCEEE-EEECCccCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhCCCccchhhHh--Hhh-----------
Confidence 444544335555 45556 555566778899999999999999999999999987666653221 111
Q ss_pred CceEEEecCccccCCCC-ceEEEEEecCHHHHHHHHh--ccccCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHH
Q 044773 82 NRVHIVYSLSKDLGLPG-FRVGAIYSNDDTVVAAATK--MSSFGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHR 158 (289)
Q Consensus 82 ~~~i~i~s~sK~~g~~G-~r~G~i~~~~~~~~~~~~~--~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 158 (289)
+...-+.+++|.+| .| +++|.++++++ +...... ....+..|++...++.+.|+-.. + ....++++++.+
T Consensus 287 gv~PDiv~~gKgl~-gG~~P~~av~~~~~-i~~~~~~~~~~~T~~gnpl~~aaa~a~L~~l~---~--~~l~~~~~~~g~ 359 (459)
T PRK06082 287 GIEPDILCIGKGLG-GGLVPIAAMITKDK-YNTAAQISLGHYTHEKSPLGCAAALATIEVIE---Q--EGLLEKVKADSQ 359 (459)
T ss_pred CCCCCEEEeccccc-CCCCcceEEEEcHH-HHhhccCCCCCCCCCcCHHHHHHHHHHHHHHH---h--cCHHHHHHHHHH
Confidence 11111335899998 77 59999999654 4333221 11233367777766666655321 1 123445555555
Q ss_pred HHHHHHHhc----CCceecCCceEEEEEecCcccc--CCChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEEec-
Q 044773 159 KLVSGLEKA----GISCLKSNAGLFCWVDMRHLLS--SNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFAN- 231 (289)
Q Consensus 159 ~l~~~l~~~----g~~~~~~~~g~~~~i~~~~~~~--~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ris~~~- 231 (289)
+|.+.|+++ ++......-|.++.+++..... .........+...++ +.||.+.+.. ...+|++++.
T Consensus 360 ~l~~~L~~l~~~~~~i~~vrG~Gl~~~ve~~~~~~~~~~~~~~~~~~~~~~~-~~Gvl~~~~~------~~~i~~~Ppl~ 432 (459)
T PRK06082 360 FMRERLLEMKAKYPLIGDVRGIGLLWGVELVTDRHTKERAYDEAEAVLYRCL-NNGLSFKVSQ------GNVIQLSPPLI 432 (459)
T ss_pred HHHHHHHHHHhhCCCeeeeeeccceeEEEEccCccccCccHHHHHHHHHHHH-hCCCEEEecC------CCEEEEeCCCc
Confidence 555555543 3222222234566676653211 111111234555555 6799987631 3579999864
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHh
Q 044773 232 MSEDTLKLSMQRLKAFVDSITTT 254 (289)
Q Consensus 232 ~~~e~l~~~l~~l~~~l~~~~~~ 254 (289)
+++++++++++++.+++.+..+.
T Consensus 433 it~~eid~~~~~l~~~l~~~~~~ 455 (459)
T PRK06082 433 ITREELTQALAILEEAIAKICQD 455 (459)
T ss_pred cCHHHHHHHHHHHHHHHHHHhhh
Confidence 69999999999999999887553
No 244
>PRK06084 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=99.56 E-value=9.4e-13 Score=121.05 Aligned_cols=84 Identities=23% Similarity=0.329 Sum_probs=66.5
Q ss_pred hHHHhhhCCCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCC
Q 044773 2 YQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVW 81 (289)
Q Consensus 2 l~~~~~~~~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 81 (289)
+++++. +++++|++++|+||||.+++ +++|.++|+++++++|+|++|+.... . .+ .+ .
T Consensus 136 le~ai~--~~tklV~lesp~NPtG~v~d---l~~I~~la~~~~i~vVvD~a~a~~~~-~---~p-~~------------~ 193 (425)
T PRK06084 136 LEALID--ERTKAVFCESIGNPAGNIID---IQALADAAHRHGVPLIVDNTVATPVL-C---RP-FE------------H 193 (425)
T ss_pred HHHHhc--cCCcEEEEeCCCCCCCeecC---HHHHHHHHHHcCCEEEEECCCccccc-C---Ch-hh------------c
Confidence 344444 46899999999999999999 89999999999999999999984311 1 11 11 2
Q ss_pred CceEEEecCccccCCCCceEEEEEec
Q 044773 82 NRVHIVYSLSKDLGLPGFRVGAIYSN 107 (289)
Q Consensus 82 ~~~i~i~s~sK~~g~~G~r~G~i~~~ 107 (289)
+.++++.|++|.++.+|.++|.+++.
T Consensus 194 gaDivv~S~tK~l~G~g~~~gG~v~~ 219 (425)
T PRK06084 194 GADIVVHSLTKYIGGHGTSIGGIVVD 219 (425)
T ss_pred CCCEEEECchhcccccccceeEEEEe
Confidence 45599999999998889999988774
No 245
>PRK06176 cystathionine gamma-synthase/cystathionine beta-lyase; Validated
Probab=99.56 E-value=1.1e-12 Score=119.00 Aligned_cols=131 Identities=17% Similarity=0.186 Sum_probs=85.9
Q ss_pred CCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEec
Q 044773 10 LKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVYS 89 (289)
Q Consensus 10 ~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~s 89 (289)
+++++|++++|+||||.+++ +++|.++|+++|+++|+|++|+...+ ..+ + + .+.++++.|
T Consensus 133 ~~t~lV~lesP~Nptg~~~d---i~~I~~la~~~gi~vivD~t~a~~~~-~~p---~-~------------~gaDivv~S 192 (380)
T PRK06176 133 PNTKALYLETPSNPLLKITD---LAQCASVAKDHGLLTIVDNTFATPYY-QNP---L-L------------LGADIVVHS 192 (380)
T ss_pred cCceEEEEECCCCCCceecC---HHHHHHHHHHcCCEEEEECCcccccc-CCc---c-c------------cCCCEEEec
Confidence 57999999999999999998 88999999999999999999985322 111 1 1 244588999
Q ss_pred CccccCCCC-ceEEEEEecCHHHHHHHHhccccCC--CChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 044773 90 LSKDLGLPG-FRVGAIYSNDDTVVAAATKMSSFGL--VSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEK 166 (289)
Q Consensus 90 ~sK~~g~~G-~r~G~i~~~~~~~~~~~~~~~~~~~--~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 166 (289)
++|.++.+| .-.|+++++++.+.+.+........ .++.....+...++. +..+.+...++...+.+.|++
T Consensus 193 ~tK~l~g~~d~~gG~vv~~~~~~~~~~~~~~~~~G~~~~~~~~~l~~~gl~t-------l~~R~~~~~~~a~~la~~L~~ 265 (380)
T PRK06176 193 GTKYLGGHSDVVAGLVTTNNEALAQEIAFFQNAIGGVLGPQDSWLLQRGIKT-------LGLRMEAHQKNALCVAEFLEK 265 (380)
T ss_pred CceeccCCccceeeEEEecHHHHHHHHHHHHHHhcCCCCHHHHHHHHhccCc-------HHHHHHHHHHHHHHHHHHHHh
Confidence 999997555 4567788766666555544333321 233333333222222 233334444556667777776
Q ss_pred c
Q 044773 167 A 167 (289)
Q Consensus 167 ~ 167 (289)
+
T Consensus 266 ~ 266 (380)
T PRK06176 266 H 266 (380)
T ss_pred C
Confidence 5
No 246
>PRK07986 adenosylmethionine--8-amino-7-oxononanoate transaminase; Validated
Probab=99.56 E-value=3.5e-13 Score=123.92 Aligned_cols=213 Identities=15% Similarity=0.109 Sum_probs=132.5
Q ss_pred HHHhhhCC-CccEEEEeCC-CCCCcc-CCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccC-hhhhhhccccccC
Q 044773 3 QLAQKRHL-KVKGVLVTNP-SNPLGT-TMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVS-IMEILKDRNCENT 78 (289)
Q Consensus 3 ~~~~~~~~-~~~~i~l~~p-~NPtG~-~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~-~~~~~~~~~~~~~ 78 (289)
++.+..++ ++.+|++... +.-.|. ..+++.+++|.++|+++|+++|+||++.+++.+|..+.. ...+.
T Consensus 195 ~~~l~~~~~~iaavi~Epi~~g~gg~~~~~~~~L~~l~~lc~~~g~lLI~DEv~tG~GrtG~~fa~~~~gv~-------- 266 (428)
T PRK07986 195 ARLMAAHRHEIAAVILEPIVQGAGGMRIYHPEWLKRVRKLCDREGILLIADEIATGFGRTGKLFACEHAGIA-------- 266 (428)
T ss_pred HHHHHhCCCcEEEEEEechhcCcCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCCccCCCeeeecccCCC--------
Confidence 44554443 4445444432 444565 446789999999999999999999999887555543211 11121
Q ss_pred CCCCceEEEecCccccCCCC-ceEEEEEecCHHHHHHHHhc-------cccCCCChHHHHHHHHHhCCchHHHHHHHHHH
Q 044773 79 EVWNRVHIVYSLSKDLGLPG-FRVGAIYSNDDTVVAAATKM-------SSFGLVSSQTQYLLSALLSDKKFAQNYISENK 150 (289)
Q Consensus 79 d~~~~~i~i~s~sK~~g~~G-~r~G~i~~~~~~~~~~~~~~-------~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~ 150 (289)
.| +.+++|.++ .| +++|.++++ +.+.+.+... ...+..|++...++.+.|+... + ....
T Consensus 267 --PD----i~t~gK~l~-gG~~p~~av~~~-~~i~~~~~~~~~~~~~~~~T~~g~p~~~aaa~a~L~~i~---~--~~~~ 333 (428)
T PRK07986 267 --PD----ILCLGKALT-GGTMTLSATLTT-REVAETISNGEAGCFMHGPTFMGNPLACAVANASLSLLE---S--GDWQ 333 (428)
T ss_pred --CC----EEEechhhh-CCcccCcchhch-HHHHHHhhcCCCCccccCCCCCcCHHHHHHHHHHHHHHH---h--CCHH
Confidence 12 336999998 88 699999995 4555554321 1223367777777666665322 1 1235
Q ss_pred HHHHHHHHHHHHHHHhc-CCcee--cCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEE
Q 044773 151 KRLKQRHRKLVSGLEKA-GISCL--KSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRV 227 (289)
Q Consensus 151 ~~~~~~~~~l~~~l~~~-g~~~~--~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ri 227 (289)
++++++.+++.+.|+++ ..... ...-|.++.+.+..+.. ...+...++ +.||.+.+. + ..+|+
T Consensus 334 ~~~~~~g~~l~~~l~~l~~~~~i~~vRg~Gl~~~ve~~~~~~------~~~~~~~l~-~~Gl~~~~~---g----~~i~~ 399 (428)
T PRK07986 334 QQVAAIEAQLREELAPLRDAPMVADVRVLGAIGVVETTRPVN------MAALQRFFV-EQGVWIRPF---G----KLIYL 399 (428)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCEEeEeccceEEEEEeCCccc------HHHHHHHHH-HCCcEEEec---C----CEEEE
Confidence 55666666666666654 21111 11225566666654321 234666665 679999864 1 37999
Q ss_pred EEec-CCHHHHHHHHHHHHHHHHH
Q 044773 228 CFAN-MSEDTLKLSMQRLKAFVDS 250 (289)
Q Consensus 228 s~~~-~~~e~l~~~l~~l~~~l~~ 250 (289)
.++. ++++++++++++|.+++++
T Consensus 400 ~Ppl~it~~ei~~~~~~l~~~l~~ 423 (428)
T PRK07986 400 MPPYIILPEQLQRLTAAVNRAVQD 423 (428)
T ss_pred eCCCCCCHHHHHHHHHHHHHHHhh
Confidence 8854 7999999999999998864
No 247
>COG1104 NifS Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism]
Probab=99.56 E-value=4e-13 Score=118.91 Aligned_cols=218 Identities=15% Similarity=0.162 Sum_probs=154.7
Q ss_pred hHHHhhhCCCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCC
Q 044773 2 YQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVW 81 (289)
Q Consensus 2 l~~~~~~~~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 81 (289)
|+++++ +++.+|.+...||-+|.+.| +++|.++|+++++++.+|.++.- |.-+.++..+
T Consensus 134 L~~al~--~~T~LVSim~aNnE~G~IQp---I~ei~~i~k~~~i~fHvDAvQa~----Gkipi~~~~~------------ 192 (386)
T COG1104 134 LEEALR--PDTILVSIMHANNETGTIQP---IAEIGEICKERGILFHVDAVQAV----GKIPIDLEEL------------ 192 (386)
T ss_pred HHHhcC--CCceEEEEEecccCeeeccc---HHHHHHHHHHcCCeEEEehhhhc----Cceecccccc------------
Confidence 456666 56899999999999999999 99999999999999999999983 4544444333
Q ss_pred CceEEEecCccccCCCCceEEEEEecCHHHHHHHH------hccccCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHH
Q 044773 82 NRVHIVYSLSKDLGLPGFRVGAIYSNDDTVVAAAT------KMSSFGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQ 155 (289)
Q Consensus 82 ~~~i~i~s~sK~~g~~G~r~G~i~~~~~~~~~~~~------~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~ 155 (289)
..++...|-+|..|..| +|+++.++..-...+. .....++.|.+...++..+++.. ...+.....++..
T Consensus 193 ~vD~ls~SaHK~~GpkG--iGaLyv~~~~~~~p~i~GGgQE~g~RsGTenv~~Ivg~~~A~~~a---~~~~~~~~~~~~~ 267 (386)
T COG1104 193 GVDLLSFSAHKFGGPKG--IGALYVRPGVRLEPLIHGGGQERGLRSGTENVPGIVGFGKAAEIA---VEELEEENARLRK 267 (386)
T ss_pred CcceEEeehhhccCCCc--eEEEEECCCCccCceeccCcCCCCCCCCCccHHHHHHHHHHHHHH---HHHHHHHHHHHHH
Confidence 45678889999999778 8888875433222211 11223445666666677666653 5556777788888
Q ss_pred HHHHHHHHHHhc--CCceecCC---ceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCCC---------
Q 044773 156 RHRKLVSGLEKA--GISCLKSN---AGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTE--------- 221 (289)
Q Consensus 156 ~~~~l~~~l~~~--g~~~~~~~---~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~--------- 221 (289)
.+++|.+.|.+. .+.+.+.. -...+.+.++... . +.....++.+||++..|+.|....
T Consensus 268 lr~~l~~~l~~~~p~~~~~g~~~~rlP~~~~~~f~gv~-g-------E~ll~~L~~~gI~vStGSACsS~~~~pShVL~A 339 (386)
T COG1104 268 LRDRLEDGLLEIIPDVYLNGDDEPRLPNILNFSFPGVE-G-------ESLLLALDLAGIAVSTGSACSSGSLEPSHVLRA 339 (386)
T ss_pred HHHHHHHHHHhcCCcEEEcCCcccCCCCeEEEEeCCCc-H-------HHHHHhccccCeEEeccccccCCCCCccHHHHH
Confidence 899999999875 33333221 1223334444321 1 234444678899999999998531
Q ss_pred --------CCeEEEEEec-CCHHHHHHHHHHHHHHHHHHHH
Q 044773 222 --------PGWFRVCFAN-MSEDTLKLSMQRLKAFVDSITT 253 (289)
Q Consensus 222 --------~~~~Ris~~~-~~~e~l~~~l~~l~~~l~~~~~ 253 (289)
.+.+|||++. ++++|++.+++.+.++++....
T Consensus 340 mG~~~e~a~~siR~S~g~~tt~eei~~~~~~l~~~i~~lr~ 380 (386)
T COG1104 340 MGISEELAHGSIRFSLGRFTTEEEIDAAAEALKEIIKRLRE 380 (386)
T ss_pred cCCChHHhCccEEEEcCCCCCHHHHHHHHHHHHHHHHHHhh
Confidence 3689999976 7999999999999999998765
No 248
>TIGR03372 putres_am_tran putrescine aminotransferase. Members of this family are putrescine aminotransferase, as found in Escherichia coli, Erwinia carotovora subsp. atroseptica, and closely related species. This pyridoxal phosphate enzyme, as characterized in E. coli, can act also on cadaverine and, more weakly, spermidine.
Probab=99.56 E-value=5.2e-13 Score=123.04 Aligned_cols=206 Identities=15% Similarity=0.146 Sum_probs=127.9
Q ss_pred CccEEEEeCC-CCCCccCC-CHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEe
Q 044773 11 KVKGVLVTNP-SNPLGTTM-SRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVY 88 (289)
Q Consensus 11 ~~~~i~l~~p-~NPtG~~~-~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~ 88 (289)
++.+|+ ..| ..-.|... +++.++++.++|+++|+++|+||++.+++.+|..+ . .+.. +...-+.
T Consensus 224 ~vAavI-vEpv~g~gG~~~p~~~yl~~l~~lc~~~g~llI~DEV~tG~GRtG~~~-a-~e~~-----------gv~PDiv 289 (442)
T TIGR03372 224 DVAAII-LEPIQGEGGVILPPEGYLPAVRALCDEFGALLILDEVQTGMGRTGKMF-A-CEHE-----------GVQPDIL 289 (442)
T ss_pred cEEEEE-EeCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEeecccCCCccccch-h-hhhc-----------CCCCCee
Confidence 455544 455 55567655 68899999999999999999999999876655431 1 1111 1112245
Q ss_pred cCccccCCCC-ceEEEEEecCHHHHHHHHh----ccccCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHH
Q 044773 89 SLSKDLGLPG-FRVGAIYSNDDTVVAAATK----MSSFGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSG 163 (289)
Q Consensus 89 s~sK~~g~~G-~r~G~i~~~~~~~~~~~~~----~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~ 163 (289)
+++|.+| .| +++|.++++ +.+.+.+.. ..+.+..|++...++.+.|+-.. + +...++.++..+++.+.
T Consensus 290 t~gK~lg-~G~~Pigavv~~-~~i~~~~~~~~~~~~~T~~gnp~~~Aaa~a~L~~i~---~--~~l~~~~~~~G~~l~~~ 362 (442)
T TIGR03372 290 CLAKALG-GGVMPIGATIAT-EAVFSVLFDNPFLHTTTFGGNPLACAAALATINELL---E--KNLPAQAAIKGDFLLDG 362 (442)
T ss_pred eehhhhc-CCcccceEEEec-HHHHHhhhccCccccCCCCCCHHHHHHHHHHHHHHH---h--ccHHHHHHHHHHHHHHH
Confidence 6999998 88 799999995 445444421 12223367777777766665321 1 11233444445555555
Q ss_pred HHhc----C-CceecCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEEec-CCHHHH
Q 044773 164 LEKA----G-ISCLKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFAN-MSEDTL 237 (289)
Q Consensus 164 l~~~----g-~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ris~~~-~~~e~l 237 (289)
|+++ + .-.....-|.++.+.+.+.. ....+...++ ++||.+.+... +...+||.++. ++++++
T Consensus 363 L~~l~~~~~~~i~~vRG~Gl~~giel~~~~------~~~~i~~~l~-~~Gvl~~~~~~----~~~~lr~~Ppl~~t~~~i 431 (442)
T TIGR03372 363 FQQLAAEYPDLIIEARGKGLLMAIEFRDNE------IGYAFAKELF-QQNILVAGTLN----NAKSIRIEPPLTITIEQC 431 (442)
T ss_pred HHHHHHhCCCceEEEecceEEEEEEeCChH------HHHHHHHHHH-HCCcEEeecCC----CCCEEEEECCcccCHHHH
Confidence 5443 2 11111223567777776431 1235677776 57999875422 23589999954 799999
Q ss_pred HHHHHHHHHHH
Q 044773 238 KLSMQRLKAFV 248 (289)
Q Consensus 238 ~~~l~~l~~~l 248 (289)
+++++++.+++
T Consensus 432 d~~~~~l~~~~ 442 (442)
T TIGR03372 432 ALVIKAAKDAL 442 (442)
T ss_pred HHHHHHHHHhC
Confidence 99999998753
No 249
>TIGR01326 OAH_OAS_sulfhy OAH/OAS sulfhydrylase. This model describes a distinct clade of the Cys/Met metabolism pyridoxal phosphate-dependent enzyme superfamily. Members include examples of OAH/OAS sulfhydrylase, an enzyme with activity both as O-acetylhomoserine (OAH) sulfhydrylase (EC 2.5.1.49) and O-acetylserine (OAS) sulphydrylase (EC 2.5.1.47). An alternate name for OAH sulfhydrylase is homocysteine synthase. This model is designated subfamily because it may or may not have both activities.
Probab=99.56 E-value=8.5e-13 Score=121.37 Aligned_cols=84 Identities=18% Similarity=0.232 Sum_probs=67.4
Q ss_pred HHHhhhCCCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCC
Q 044773 3 QLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWN 82 (289)
Q Consensus 3 ~~~~~~~~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 82 (289)
++++. +++++|++++|+||+|.+.+ +++|.++|+++|+++|+|++|... + ...+ + ..+
T Consensus 136 ~~~l~--~~t~~V~le~p~NPtg~v~d---l~~I~~la~~~~i~livD~t~~~~-~---~~~~---l----------~~g 193 (418)
T TIGR01326 136 EKAID--ENTKAVFAETIGNPAINVPD---IEAIAEVAHAHGVPLIVDNTFATP-Y---LCRP---I----------DHG 193 (418)
T ss_pred HHhcC--cCCeEEEEECCCCCCCeecC---HHHHHHHHHHcCCEEEEECCCchh-h---cCCc---h----------hcC
Confidence 44443 46899999999999999998 889999999999999999999732 1 1111 1 225
Q ss_pred ceEEEecCccccCCCCceEEEEEecC
Q 044773 83 RVHIVYSLSKDLGLPGFRVGAIYSND 108 (289)
Q Consensus 83 ~~i~i~s~sK~~g~~G~r~G~i~~~~ 108 (289)
.++++.|+||.+|.+|+|+||+++++
T Consensus 194 ~Divv~S~sK~l~g~G~~lGg~v~~~ 219 (418)
T TIGR01326 194 ADIVVHSATKYIGGHGTAIGGVIVDG 219 (418)
T ss_pred CeEEEECccccccCCccceEEEEEec
Confidence 67999999999998899999999854
No 250
>PRK06173 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional
Probab=99.56 E-value=5.2e-13 Score=122.92 Aligned_cols=216 Identities=14% Similarity=0.113 Sum_probs=136.4
Q ss_pred hHHHhhhC-CCccEEEEeCC-CCCCccC-CCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccC
Q 044773 2 YQLAQKRH-LKVKGVLVTNP-SNPLGTT-MSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENT 78 (289)
Q Consensus 2 l~~~~~~~-~~~~~i~l~~p-~NPtG~~-~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (289)
+++++..+ .++-+|++... +.-.|.. .+++.+++|.++|++||+++|+||++.+++.+|..+. .+..
T Consensus 196 l~~~i~~~~~~iAAvi~EPi~qg~gG~~~~~~~yl~~l~~lc~~~g~llI~DEv~tG~GrtG~~~a--~~~~-------- 265 (429)
T PRK06173 196 LQDLLEQKGDEIAALILEPVVQGAGGMYFYSPTYLVKARELCDQYGVLLIFDEIATGFGRTGKLFA--LEHA-------- 265 (429)
T ss_pred HHHHHHhCCCcEEEEEEcchhhccCCcccCCHHHHHHHHHHHHHcCCeEEecchhcCCCcCCcchH--HHhc--------
Confidence 34555433 34556555532 5666765 6888999999999999999999999988655554321 1111
Q ss_pred CCCCceEEEecCccccCCCC-ceEEEEEecCHHHHHHHHh-------ccccCCCChHHHHHHHHHhCCchHHHHHHHHHH
Q 044773 79 EVWNRVHIVYSLSKDLGLPG-FRVGAIYSNDDTVVAAATK-------MSSFGLVSSQTQYLLSALLSDKKFAQNYISENK 150 (289)
Q Consensus 79 d~~~~~i~i~s~sK~~g~~G-~r~G~i~~~~~~~~~~~~~-------~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~ 150 (289)
+....+.+|+|.++ .| +.+|.+++++ .+.+.+.. ..+.+..+++...++.+.|+.. ++. ...
T Consensus 266 ---gv~PDiv~~gK~l~-gG~~p~~a~~~~~-~i~~~~~~~~~~~~~~~~T~~g~p~~~aaa~a~l~~i---~~~--~~~ 335 (429)
T PRK06173 266 ---GVVPDIMCIGKALT-GGYLTLSATITTE-AIAQTICSGEAKCFMHGPTFMANPLACAIAAESIRLL---LES--PWQ 335 (429)
T ss_pred ---CCCCCEEEeehhhh-CCccccceEEecH-HHHHHHhcCCCCccccCCCCCcCHHHHHHHHHHHHHH---HhC--CHH
Confidence 11111335999997 78 5899999854 44444421 1112225666666666665532 111 235
Q ss_pred HHHHHHHHHHHHHHHhc-CCceec--CCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEE
Q 044773 151 KRLKQRHRKLVSGLEKA-GISCLK--SNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRV 227 (289)
Q Consensus 151 ~~~~~~~~~l~~~l~~~-g~~~~~--~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ri 227 (289)
++++++.++|.+.|++. ++.... ..-|.++.+.+..... ...+...|+ +.||.+.+.. ..+||
T Consensus 336 ~~~~~~g~~l~~~L~~~~~~~~v~~vRg~Gl~~~iel~~~~~------~~~i~~~l~-e~Gi~v~~~g-------~~l~~ 401 (429)
T PRK06173 336 QNIQRIEAQLKQELAPAAEFDSVAEVRVLGAIGVVEMKEPVN------MATLQPRFV-EHGIWVRPFG-------KLVYI 401 (429)
T ss_pred HHHHHHHHHHHHHHHHhhcCCCeeeeeccceEEEEEeCCccc------HHHHHHHHH-HCCeEEEecC-------CEEEE
Confidence 66677777777777754 333221 1235666677754321 134666665 6699997641 37999
Q ss_pred EEec-CCHHHHHHHHHHHHHHHHHH
Q 044773 228 CFAN-MSEDTLKLSMQRLKAFVDSI 251 (289)
Q Consensus 228 s~~~-~~~e~l~~~l~~l~~~l~~~ 251 (289)
.++. .+++++++++++|.+++.+.
T Consensus 402 ~Ppl~it~~ei~~~~~~l~~~l~~~ 426 (429)
T PRK06173 402 MPPFIISPDELSQLTSGLLRVLKQE 426 (429)
T ss_pred eCCccCCHHHHHHHHHHHHHHHHHH
Confidence 9964 79999999999999998764
No 251
>PLN02651 cysteine desulfurase
Probab=99.56 E-value=9.1e-14 Score=125.68 Aligned_cols=201 Identities=17% Similarity=0.170 Sum_probs=132.4
Q ss_pred hHHHhhhCCCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCC
Q 044773 2 YQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVW 81 (289)
Q Consensus 2 l~~~~~~~~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 81 (289)
+++++. ++++++++++++||||.+.+ +++|.++|+++|+++++|.+++. |.....+. ..
T Consensus 131 l~~~i~--~~t~lv~v~~~~n~tG~~~~---l~~I~~~~~~~g~~~~vD~a~~~----g~~~~~~~------------~~ 189 (364)
T PLN02651 131 LAAAIR--PDTALVSVMAVNNEIGVIQP---VEEIGELCREKKVLFHTDAAQAV----GKIPVDVD------------DL 189 (364)
T ss_pred HHHhcC--CCcEEEEEECCCCCceeccc---HHHHHHHHHHcCCEEEEEcchhh----CCcccCcc------------cC
Confidence 344443 46899999999999999999 88999999999999999999984 22222322 33
Q ss_pred CceEEEecCccccCCCCceEEEEEecCHHHHHHH--H------hccccCCCChHHHHHHHHHhCCchHHHHHHHHHHHHH
Q 044773 82 NRVHIVYSLSKDLGLPGFRVGAIYSNDDTVVAAA--T------KMSSFGLVSSQTQYLLSALLSDKKFAQNYISENKKRL 153 (289)
Q Consensus 82 ~~~i~i~s~sK~~g~~G~r~G~i~~~~~~~~~~~--~------~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~ 153 (289)
+.++++.|.+|.+| | ..+|+++++++...... . .....++.+.....++.++++.. ....++.+++.
T Consensus 190 ~~D~~~~s~hK~~g-p-~G~g~l~v~~~~~~~l~p~~~g~~~~~~~~~GT~~~~~~~~l~~al~~~---~~~~~~i~~~~ 264 (364)
T PLN02651 190 GVDLMSISGHKIYG-P-KGVGALYVRRRPRVRLEPLMSGGGQERGRRSGTENTPLVVGLGAACELA---MKEMDYDEKHM 264 (364)
T ss_pred CCCEEEechhhhCC-C-CceEEEEEcCCCCCCCCccccCCCccCCccCCCccHHHHHHHHHHHHHH---HHhHHHHHHHH
Confidence 56799999999644 3 34899988654322110 0 00112334445555666665542 33457777888
Q ss_pred HHHHHHHHHHHHh-c-CCceecCCc-----eEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCC------
Q 044773 154 KQRHRKLVSGLEK-A-GISCLKSNA-----GLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCT------ 220 (289)
Q Consensus 154 ~~~~~~l~~~l~~-~-g~~~~~~~~-----g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~------ 220 (289)
++..+++.+.|.+ + |+++..+.. ...+.+.++. .+ ..++...|. + |.+..|..|...
T Consensus 265 ~~l~~~l~~~l~~~~~~~~i~~~~~~~~~~~~i~~~~~~~-~~------~~~~~~~L~-~--i~v~~g~~c~~~~~~~~~ 334 (364)
T PLN02651 265 KALRERLLNGLRAKLGGVRVNGPRDPEKRYPGTLNLSFAY-VE------GESLLMGLK-E--VAVSSGSACTSASLEPSY 334 (364)
T ss_pred HHHHHHHHHHHHhhCCCEEEECCCCcccCcCCEEEEEeCC-CC------HHHHHHHhC-C--EEEEchhhcCCCCCCcCH
Confidence 8899999999875 3 777776411 1133344442 11 235666663 3 999988877543
Q ss_pred -----------CCCeEEEEEec-CCHHHHH
Q 044773 221 -----------EPGWFRVCFAN-MSEDTLK 238 (289)
Q Consensus 221 -----------~~~~~Ris~~~-~~~e~l~ 238 (289)
..+.+|+|++. +|++|++
T Consensus 335 ~~~~~g~~~~~~~~~vR~S~~~~~t~~did 364 (364)
T PLN02651 335 VLRALGVPEEMAHGSLRLGVGRFTTEEEVD 364 (364)
T ss_pred HHHHcCCChHHhCceEEEEcCCCCCHHHcC
Confidence 13789999975 7888874
No 252
>COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase [Amino acid transport and metabolism]
Probab=99.56 E-value=2.4e-12 Score=114.66 Aligned_cols=221 Identities=16% Similarity=0.229 Sum_probs=162.3
Q ss_pred hHHHhhhCCCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCC
Q 044773 2 YQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVW 81 (289)
Q Consensus 2 l~~~~~~~~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 81 (289)
+++++.+++++++|.+++.--+||..-+ +++|.++|++|++++|+|.+-+ +++.+. .+ |.+
T Consensus 122 v~~~L~~~~~~~~V~~vH~ETSTGvlnp---l~~I~~~~k~~g~l~iVDaVsS---~Gg~~~-~v------------d~w 182 (383)
T COG0075 122 VEEALDKDPDIKAVAVVHNETSTGVLNP---LKEIAKAAKEHGALLIVDAVSS---LGGEPL-KV------------DEW 182 (383)
T ss_pred HHHHHhcCCCccEEEEEeccCcccccCc---HHHHHHHHHHcCCEEEEEeccc---CCCccc-ch------------hhc
Confidence 6889999999999999998888999988 9999999999999999999988 445543 22 466
Q ss_pred CceEEEecCccccCC-CCceEEEEEecCHHHHHHHHh---------------c----cccCCCChHHHHHHHHHhCCchH
Q 044773 82 NRVHIVYSLSKDLGL-PGFRVGAIYSNDDTVVAAATK---------------M----SSFGLVSSQTQYLLSALLSDKKF 141 (289)
Q Consensus 82 ~~~i~i~s~sK~~g~-~G~r~G~i~~~~~~~~~~~~~---------------~----~~~~~~~~~~q~~~~~~l~~~~~ 141 (289)
+.++++++--|.+++ || +|.+..+++.+...... + ...++++.....++..+|....
T Consensus 183 giDv~itgSQK~l~~PPG--la~v~~S~~a~e~~~~~~~~~~ylDL~~~~~~~~~~~~~p~Tppv~~i~aL~~al~~i~- 259 (383)
T COG0075 183 GIDVAITGSQKALGAPPG--LAFVAVSERALEAIEERKHPSFYLDLKKWLKYMEKKGSTPYTPPVNLIYALREALDLIL- 259 (383)
T ss_pred CccEEEecCchhccCCCc--cceeEECHHHHHHHhcCCCCceeecHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHHHHH-
Confidence 888999999999974 46 77888865554432211 1 1122244455555666665432
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCceecCC---ceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCC
Q 044773 142 AQNYISENKKRLKQRHRKLVSGLEKAGISCLKSN---AGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCH 218 (289)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~---~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~ 218 (289)
.+=++.+.++++++.+.+++.++++|++....+ ..-...+.+|+..+. .+....+++++|+.+.+|..
T Consensus 260 -~EGle~r~~RH~~~~~a~r~~~~alGl~~~~~~~~~s~tvta~~~P~g~~~------~~~~~~~~~~~g~~i~gg~~-- 330 (383)
T COG0075 260 -EEGLEARIARHRRLAEALRAGLEALGLELFADPERRSPTVTAIKVPEGVDD------KKVRRALLKEYGVEIAGGQG-- 330 (383)
T ss_pred -HhhHHHHHHHHHHHHHHHHHHHHHcCCccccCcccCCCceEEEECCCCCCc------HHHHHHHHHhCCEEeccccc--
Confidence 222688889999999999999999999877622 112334556655443 23444788899999887653
Q ss_pred CCCCCeEEEEE-ecCCHHHHHHHHHHHHHHHHHHHH
Q 044773 219 CTEPGWFRVCF-ANMSEDTLKLSMQRLKAFVDSITT 253 (289)
Q Consensus 219 ~~~~~~~Ris~-~~~~~e~l~~~l~~l~~~l~~~~~ 253 (289)
......+||+. +..+.+++..++.+|..++.+..-
T Consensus 331 ~l~gkifRIGhMG~~~~~dv~~~l~ale~~L~~~g~ 366 (383)
T COG0075 331 PLKGKIFRIGHMGNVRPEDVLAALAALEAALRELGV 366 (383)
T ss_pred ccCccEEEEecCccCCHHHHHHHHHHHHHHHHHcCC
Confidence 34457899999 667999999999999999988754
No 253
>PTZ00094 serine hydroxymethyltransferase; Provisional
Probab=99.55 E-value=1.4e-12 Score=121.10 Aligned_cols=221 Identities=14% Similarity=0.139 Sum_probs=134.7
Q ss_pred hHHHhhhCCCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCC
Q 044773 2 YQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVW 81 (289)
Q Consensus 2 l~~~~~~~~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 81 (289)
++++++.. +++++++.+ +.+|...+ +++|.++|+++|+++++|.+|+........... +..
T Consensus 174 L~~~l~~~-~~~lvi~~~--s~~g~~~d---i~~I~~i~~~~ga~l~vDaaq~~G~i~~~~~~~-------------~~~ 234 (452)
T PTZ00094 174 LEELAKAF-RPKLIIAGA--SAYPRDID---YKRFREICDSVGAYLMADIAHTSGLVAAGVLPS-------------PFP 234 (452)
T ss_pred HHHHHHHh-CCCEEEEeC--CCCCCccC---HHHHHHHHHHcCCEEEEeccchhccccCCCCCC-------------CCC
Confidence 45566543 567766543 34888888 888889999999999999999854332211110 011
Q ss_pred CceEEEecCccccCCCCceEEEEEecCHHHHHHHHhc-----ccc-CCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHH
Q 044773 82 NRVHIVYSLSKDLGLPGFRVGAIYSNDDTVVAAATKM-----SSF-GLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQ 155 (289)
Q Consensus 82 ~~~i~i~s~sK~~g~~G~r~G~i~~~~~~~~~~~~~~-----~~~-~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~ 155 (289)
+.+++++|++|+++.|. -|+++++++......... ..+ +..+.....++..+++... ....++.++++.+
T Consensus 235 ~~D~l~~S~hK~l~GP~--Gg~l~~~~~~~~~l~~~~~~~~~p~~~G~~~~~~iaal~~al~~~~--~~~~~~~~~~i~~ 310 (452)
T PTZ00094 235 YADVVTTTTHKSLRGPR--SGLIFYRKKVKPDIENKINEAVFPGLQGGPHNHQIAAIAVQLKEVQ--SPEWKEYAKQVLK 310 (452)
T ss_pred CCcEEEcCCccCCCCCC--ceEEEEecccchHHHHhhccccCCCCCCCchHHHHHHHHHHHHHHh--ChhHHHHHHHHHH
Confidence 45688999999883232 388888554322111111 111 1122333333444443221 2235667788999
Q ss_pred HHHHHHHHHHhcCCceecCCc-eEEEEEecCccccCCChhhHHHHHHHHHHhcCeEE-eCCCCCCC--CCCCeEEEEEec
Q 044773 156 RHRKLVSGLEKAGISCLKSNA-GLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNI-SPGSSCHC--TEPGWFRVCFAN 231 (289)
Q Consensus 156 ~~~~l~~~l~~~g~~~~~~~~-g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v-~pg~~f~~--~~~~~~Ris~~~ 231 (289)
+.+++.+.|.+.|+++..+.. ....++.+..... + .+....+++++||.+ .++.++.. ..++.+|+++..
T Consensus 311 l~~~l~~~L~~~g~~v~~~~~~~~~~~v~~~~~~~-----~-~~~~~~~L~~~gI~vs~~~~p~~~~~~~~~~vRis~~~ 384 (452)
T PTZ00094 311 NAKALAAALEKRGYDLVTGGTDNHLVLVDLRPFGI-----T-GSKMEKLLDAVNISVNKNTIPGDKSALNPSGVRLGTPA 384 (452)
T ss_pred HHHHHHHHHHhCCcEEecCCCCCceEeecCCcCCC-----C-HHHHHHHHHHCCcEEecccCCCCCcCCCCCeEEECCHH
Confidence 999999999887887764321 2233444443211 1 124444557889999 56655542 234789999954
Q ss_pred -CC----HHHHHHHHHHHHHHHHHH
Q 044773 232 -MS----EDTLKLSMQRLKAFVDSI 251 (289)
Q Consensus 232 -~~----~e~l~~~l~~l~~~l~~~ 251 (289)
++ ++|++.+++.|.+++...
T Consensus 385 ~tt~g~~~~di~~l~~~l~~~~~~~ 409 (452)
T PTZ00094 385 LTTRGAKEKDFKFVADFLDRAVKLA 409 (452)
T ss_pred HHhCCCCHHHHHHHHHHHHHHHHHH
Confidence 34 899999999999998864
No 254
>PLN02509 cystathionine beta-lyase
Probab=99.55 E-value=1e-12 Score=121.51 Aligned_cols=133 Identities=12% Similarity=0.118 Sum_probs=88.7
Q ss_pred CCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEec
Q 044773 10 LKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVYS 89 (289)
Q Consensus 10 ~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~s 89 (289)
+++|+|++++|+||+|.+. ++++|+++|+++|+++|+|++|....+ +. + . ..+.++++.|
T Consensus 216 ~~TklV~lesPsNPtG~i~---Dl~~I~~lAk~~g~~lIVD~A~a~~~~-~~---p-l------------~~gaDivv~S 275 (464)
T PLN02509 216 PQTKLVWLESPTNPRQQIS---DIRKIAEMAHAQGALVLVDNSIMSPVL-SR---P-L------------ELGADIVMHS 275 (464)
T ss_pred cCCeEEEEECCCCCCCCHH---HHHHHHHHHHHcCCEEEEECCcccccc-CC---h-h------------hcCCcEEEec
Confidence 5789999999999999974 499999999999999999999864322 11 1 1 1244688999
Q ss_pred CccccCCCC-ceEEEEEecCHHHHHHHHhccccCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 044773 90 LSKDLGLPG-FRVGAIYSNDDTVVAAATKMSSFGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEKA 167 (289)
Q Consensus 90 ~sK~~g~~G-~r~G~i~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 167 (289)
++|+++.+| .-.|+++++++.+.+.+....... .+.+....++.++.. .+.+..+.++..++.+.+.+.|+++
T Consensus 276 ~tK~l~G~gdv~gG~v~~~~~~l~~~~~~~~~~~-g~~l~p~~A~l~lr~----L~tL~~R~~r~~~nA~~la~~L~~~ 349 (464)
T PLN02509 276 ATKFIAGHSDVMAGVLAVKGEKLAKEVYFLQNSE-GSGLAPFDCWLCLRG----IKTMALRIEKQQENARKIAMYLSSH 349 (464)
T ss_pred CcccccCCCccceeEEEeccHHHHHHHHHHHHhc-CCCcCHHHHHHHHhh----hhhHHHHHHHHHHHHHHHHHHHhcC
Confidence 999997543 446888876555544433322221 122222333333333 2235666677778888888888876
No 255
>PRK07482 hypothetical protein; Provisional
Probab=99.55 E-value=1.4e-12 Score=121.17 Aligned_cols=224 Identities=10% Similarity=0.014 Sum_probs=136.6
Q ss_pred hHHHhhh-C-CCccEEEEeCC-CCCCccC-CCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhcccccc
Q 044773 2 YQLAQKR-H-LKVKGVLVTNP-SNPLGTT-MSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCEN 77 (289)
Q Consensus 2 l~~~~~~-~-~~~~~i~l~~p-~NPtG~~-~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (289)
+++++.. . .++-+ ++..| +.-.|.. .+++.+++|.++|++||+++|.||++.+++.+|..+.. +.
T Consensus 209 l~~~~~~~~~~~iAA-vi~EPvqg~gG~~~~~~~yl~~lr~lc~~~giLlI~DEV~tGfGRtG~~~a~--~~-------- 277 (461)
T PRK07482 209 LEELILAEGPDTIAA-FIAEPVLGTGGIVPPPAGYWPAIQAVLKKYDILLIADEVVTGFGRLGSMFGS--DH-------- 277 (461)
T ss_pred HHHHHHhcCCCcEEE-EEECCccCCCCCcCCCHHHHHHHHHHHHHhCCEEEEeccccCCCcCcchhhH--Hh--------
Confidence 3455532 2 24555 45556 5555666 57889999999999999999999999998777664322 11
Q ss_pred CCCCCceEEEecCccccCCCCc-eEEEEEecCHHHHHHHHh---------ccccCCCChHHHHHHHHHhCCchHHHHHHH
Q 044773 78 TEVWNRVHIVYSLSKDLGLPGF-RVGAIYSNDDTVVAAATK---------MSSFGLVSSQTQYLLSALLSDKKFAQNYIS 147 (289)
Q Consensus 78 ~d~~~~~i~i~s~sK~~g~~G~-r~G~i~~~~~~~~~~~~~---------~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~ 147 (289)
.+...-+-+++|.++ .|. ++|.+++++ .+.+.+.. ..+.+..|++...++.+.|+...- .
T Consensus 278 ---~gv~PDiv~~gKgl~-gG~~Pi~av~~~~-~i~~~~~~~~~~~~~~~h~~T~~gnpl~~Aaa~a~L~~~~~-----~ 347 (461)
T PRK07482 278 ---YGIEPDLITVAKGLT-SAYAPLSGSIVGE-KVWDVLEQGSDEHGAIGHGWTYSGHPICAAAALANLDILER-----E 347 (461)
T ss_pred ---cCCCCCEEEEccccc-cCccccceeeecH-HHHHHHhcccccCCccccCCCCCcCHHHHHHHHHHHHHHHh-----C
Confidence 122233556899998 784 999999954 44444431 112333788888877777663221 1
Q ss_pred HHHHHHHHHHHHHHHHHH----hcCCceecCCceEEEEEecCcccc-CCChh----hHHHHHHHHHHhcCeEEeCCCCCC
Q 044773 148 ENKKRLKQRHRKLVSGLE----KAGISCLKSNAGLFCWVDMRHLLS-SNTFE----AEMELWKKIVYDVKLNISPGSSCH 218 (289)
Q Consensus 148 ~~~~~~~~~~~~l~~~l~----~~g~~~~~~~~g~~~~i~~~~~~~-~~~~~----~~~~~~~~ll~~~gi~v~pg~~f~ 218 (289)
...++.++..+++.+.|+ ++++......-|.+..+.+..... ...+. -...+...++ +.||.+.++.
T Consensus 348 ~l~~~~~~~g~~l~~~L~~l~~~~~~v~~vrG~Glm~giel~~~~~~~~~~~~~~~~~~~i~~~~~-~~Gvl~~~~~--- 423 (461)
T PRK07482 348 NLVGNAAEVGAYFRARLRAAFGDHPLVGEVRGVGMLAAVEFVADRDDRTPFDPALKIGPQVSAAAL-ERGVIARAMP--- 423 (461)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhcCCCEEEEeeceeEEEEEeccCCCcCCCCChhhHHHHHHHHHHH-HCCcEEecCC---
Confidence 122333444444555554 333322222335666677753211 11000 1234666666 6799986531
Q ss_pred CCCCCeEEEEEec-CCHHHHHHHHHHHHHHHHHHH
Q 044773 219 CTEPGWFRVCFAN-MSEDTLKLSMQRLKAFVDSIT 252 (289)
Q Consensus 219 ~~~~~~~Ris~~~-~~~e~l~~~l~~l~~~l~~~~ 252 (289)
....+|+.++. +++++++++++++.+++++..
T Consensus 424 --~~~~i~~~Ppl~it~~ei~~~~~~l~~~l~~~~ 456 (461)
T PRK07482 424 --HGDILGFAPPLVLTRAEADEIVAIAKDAVDEVL 456 (461)
T ss_pred --CCCEEEEeCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 12478998753 799999999999999998753
No 256
>PLN02760 4-aminobutyrate:pyruvate transaminase
Probab=99.55 E-value=1.2e-12 Score=122.56 Aligned_cols=213 Identities=10% Similarity=0.073 Sum_probs=133.2
Q ss_pred ccEEEEeCC-CCCCccC-CCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEec
Q 044773 12 VKGVLVTNP-SNPLGTT-MSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVYS 89 (289)
Q Consensus 12 ~~~i~l~~p-~NPtG~~-~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~s 89 (289)
+.+ ++..| ..-.|.+ .+.+.+++|.++|++||+++|+||++.+++..|..+. .+. .+...-+.+
T Consensus 261 iAA-vI~EPv~g~gG~~~p~~~yl~~lr~lc~~~g~lLI~DEV~TGfGRtG~~~a--~e~-----------~gv~PDivt 326 (504)
T PLN02760 261 IAA-FIAEPVMGAGGVIPPPATYFEKIQAVLKKYDILFIADEVICAFGRLGTMFG--CDK-----------YNIKPDLVS 326 (504)
T ss_pred eEE-EEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEecchhhCCcccchhhH--HHh-----------cCCCCcEEE
Confidence 444 55556 5555655 4688999999999999999999999998877666432 121 122334788
Q ss_pred CccccCCCC-ceEEEEEecCHHHHHHHHh---------ccccCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHH
Q 044773 90 LSKDLGLPG-FRVGAIYSNDDTVVAAATK---------MSSFGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRK 159 (289)
Q Consensus 90 ~sK~~g~~G-~r~G~i~~~~~~~~~~~~~---------~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 159 (289)
|+|.+| .| +++|.++++ +.+.+.+.. ....+..|++...++.+.|+... + +...++.+++.++
T Consensus 327 lgK~lg-gG~~PigAv~~~-~~i~d~~~~~~~~~~~~~h~~T~~gnPl~~Aaala~Le~i~---~--~~l~~~~~~~g~~ 399 (504)
T PLN02760 327 LAKALS-SAYMPIGAVLVS-PEISDVIHSQSNKLGSFAHGFTYSGHPVSCAVALEALKIYK---E--RNIPEHVNKIAPR 399 (504)
T ss_pred eccccc-CCccccceEeec-HHHHhhhhcccccccCcccCCCCCCCHHHHHHHHHHHHHHH---h--CCHHHHHHHHHHH
Confidence 999998 66 599999995 455555432 11223367777777776665322 1 1334455555555
Q ss_pred HHHHHHhc---CCceecCCceEEEEEecCccccC-CCh----hhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEEec
Q 044773 160 LVSGLEKA---GISCLKSNAGLFCWVDMRHLLSS-NTF----EAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFAN 231 (289)
Q Consensus 160 l~~~l~~~---g~~~~~~~~g~~~~i~~~~~~~~-~~~----~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ris~~~ 231 (289)
|.+.|+++ ++......-|.++.+.+...... ..+ .-...+...++ ++||.+.+.. ..+||++..
T Consensus 400 l~~~L~~l~~~~~v~~vrG~Gl~~gie~~~~~~~~~~~~~~~~~~~~i~~~~~-~~Gvl~~~~g-------~~lrl~Ppl 471 (504)
T PLN02760 400 FQDGIKAFSGSPIIGEIRGTGLILGTEFVDNKSPNDPFPAEWGVGAYFGAECK-KRGMLVRVAG-------DNIMMSPPL 471 (504)
T ss_pred HHHHHHHHhcCCCeeeEEeCceEEEEEEecCCcccccccchhHHHHHHHHHHH-hCCcEEEecC-------CEEEEECCC
Confidence 55555543 32211122245556666432111 100 01234556655 6799987631 368999853
Q ss_pred -CCHHHHHHHHHHHHHHHHHHHH
Q 044773 232 -MSEDTLKLSMQRLKAFVDSITT 253 (289)
Q Consensus 232 -~~~e~l~~~l~~l~~~l~~~~~ 253 (289)
+++++++++++++.+++++...
T Consensus 472 ~it~eeid~~~~~l~~al~~~~~ 494 (504)
T PLN02760 472 IITPEEVDELISIYGKALKATEE 494 (504)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHH
Confidence 6999999999999999887643
No 257
>TIGR00508 bioA adenosylmethionine-8-amino-7-oxononanoate transaminase. All members of the seed alignment have been demonstrated experimentally to act as EC 2.6.1.62, an enzyme in the biotin biosynthetic pathway. Alternate names include 7,8-diaminopelargonic acid aminotransferase, DAPA aminotransferase, and adenosylmethionine-8-amino-7-oxononanoate aminotransferase. The gene symbol is bioA in E. coli and BIO3 in S. cerevisiae.
Probab=99.54 E-value=6.5e-13 Score=122.34 Aligned_cols=212 Identities=18% Similarity=0.170 Sum_probs=131.7
Q ss_pred HHHhhhCC-CccEEEEeCC--CCCCcc-CCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccC-hhhhhhcccccc
Q 044773 3 QLAQKRHL-KVKGVLVTNP--SNPLGT-TMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVS-IMEILKDRNCEN 77 (289)
Q Consensus 3 ~~~~~~~~-~~~~i~l~~p--~NPtG~-~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~-~~~~~~~~~~~~ 77 (289)
++++.+++ ++.+ ++..| ++-.|. .++.+++++|.++|+++++++|+||+|.+++.+|..+.. ...+
T Consensus 198 ~~~l~~~~~~vaa-vivEPv~~g~gG~~~~~~~~l~~l~~lc~~~~~llI~DEv~tG~Gr~G~~~~~~~~~v-------- 268 (427)
T TIGR00508 198 AKLMELHSDEIAA-VILEPIVQGAGGMRFYHPTYLKRVQALCKQYDILLIADEIATGFGRTGKLFACEHAGV-------- 268 (427)
T ss_pred HHHHHhcCCcEEE-EEEechhcCcCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCCccchhhhcCC--------
Confidence 44554443 4445 55555 554555 457899999999999999999999999887665543222 1122
Q ss_pred CCCCCceEEEecCccccCCCCc-eEEEEEecCHHHHHHHHh-------ccccCCCChHHHHHHHHHhCCchHHHHHHHHH
Q 044773 78 TEVWNRVHIVYSLSKDLGLPGF-RVGAIYSNDDTVVAAATK-------MSSFGLVSSQTQYLLSALLSDKKFAQNYISEN 149 (289)
Q Consensus 78 ~d~~~~~i~i~s~sK~~g~~G~-r~G~i~~~~~~~~~~~~~-------~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~ 149 (289)
..+ +.+++|+++ .|+ .++.++++ +.+.+.+.. ....+..|++...++.+.|+-.. + ...
T Consensus 269 --~pD----i~~~gK~l~-gG~~p~~a~~~~-~~~~~~~~~~~~~~~~~~~T~~g~p~~~aaa~a~l~~l~---~--~~~ 335 (427)
T TIGR00508 269 --VPD----ILCVGKALT-GGYMTLSATVTT-DKVAQTISSGEAGCFMHGPTFMGNPLACAVAEASLAILL---E--GEW 335 (427)
T ss_pred --CCC----EEEechhhh-cCcccceEEEEc-HHHHHHHhcCCCCccccCCCCCcCHHHHHHHHHHHHHHH---h--CCH
Confidence 112 334899997 784 78888884 455555542 11222357777777766665321 1 123
Q ss_pred HHHHHHHHHHHHHHHHhcCCc-eecC--CceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEE
Q 044773 150 KKRLKQRHRKLVSGLEKAGIS-CLKS--NAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFR 226 (289)
Q Consensus 150 ~~~~~~~~~~l~~~l~~~g~~-~~~~--~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~R 226 (289)
.++++++.++|.+.|++++.. .... .-|.++.+.+..... ...+...++ +.||.+.+.. ..+|
T Consensus 336 ~~~~~~~~~~l~~~L~~l~~~~~i~~vrg~G~~~~i~~~~~~~------~~~~~~~l~-~~Gv~~~~~~-------~~l~ 401 (427)
T TIGR00508 336 QKQVSAIENQLKRELSPLRKNPVVKDVRVLGAIGVVEMYKPVN------VEELQKKFV-EQGVWIRPFG-------KLIY 401 (427)
T ss_pred HHHHHHHHHHHHHHHHHhhcCCCEEeEeccccEEEEEECCccC------HHHHHHHHH-HCCeEEEecC-------CEEE
Confidence 456666667777777665311 1111 114555566643211 235666666 6699997532 3689
Q ss_pred EEEec-CCHHHHHHHHHHHHHHHHH
Q 044773 227 VCFAN-MSEDTLKLSMQRLKAFVDS 250 (289)
Q Consensus 227 is~~~-~~~e~l~~~l~~l~~~l~~ 250 (289)
+++.. +++++++++++++.+++.+
T Consensus 402 ~~ppl~~t~~~id~~~~~l~~~l~~ 426 (427)
T TIGR00508 402 VMPPYIITTEQLQKLTAALIEALHE 426 (427)
T ss_pred EECCCCCCHHHHHHHHHHHHHHHhc
Confidence 99863 6999999999999998854
No 258
>PRK09028 cystathionine beta-lyase; Provisional
Probab=99.54 E-value=1.6e-12 Score=117.95 Aligned_cols=130 Identities=14% Similarity=0.142 Sum_probs=90.0
Q ss_pred CCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEec
Q 044773 10 LKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVYS 89 (289)
Q Consensus 10 ~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~s 89 (289)
+++|+|++++|+||||.+.+ +++|+++|+++|+++|+|++|+.. + ...++ ..+-++++.|
T Consensus 145 ~~TklV~lespsNPtg~v~d---l~~I~~la~~~g~~lvvD~t~a~p-~---~~~Pl-------------~~GaDivv~S 204 (394)
T PRK09028 145 PNTKVLFLESPGSITMEVQD---VPTLSRIAHEHDIVVMLDNTWASP-I---NSRPF-------------EMGVDISIQA 204 (394)
T ss_pred cCceEEEEECCCCCCCcHHH---HHHHHHHHHHcCCEEEEECCcccc-c---cCCcc-------------ccCceEEEEe
Confidence 57999999999999987755 999999999999999999999842 1 11111 2256799999
Q ss_pred Ccccc-CCCCceEEEEEecCHHHHHHHHhccc-cC-CCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 044773 90 LSKDL-GLPGFRVGAIYSNDDTVVAAATKMSS-FG-LVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEK 166 (289)
Q Consensus 90 ~sK~~-g~~G~r~G~i~~~~~~~~~~~~~~~~-~~-~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 166 (289)
.+|++ |.+++-.|+++.+ +.+.+.+..... .+ ..++.....+.+-++. +.-+.++..++...+.+.|++
T Consensus 205 ~tK~l~Gh~d~~~G~~~~~-~~~~~~l~~~~~~~G~~~~p~~a~l~~rgl~T-------L~lR~~~~~~na~~la~~L~~ 276 (394)
T PRK09028 205 ATKYIVGHSDVMLGTATAN-EKHWDQLREHSYLMGQCTSPDDVYLAMRGLRT-------LGVRLAQHEKNALKVANWLAT 276 (394)
T ss_pred CCeEecCCCCEEEEEEECC-HHHHHHHHHHHHhcCCCCCHHHHHHHHcccCc-------HHHHHHHHHHHHHHHHHHHhc
Confidence 99999 4456888977664 444443332221 22 2444544444444444 455566677788888889988
Q ss_pred c
Q 044773 167 A 167 (289)
Q Consensus 167 ~ 167 (289)
+
T Consensus 277 ~ 277 (394)
T PRK09028 277 R 277 (394)
T ss_pred C
Confidence 7
No 259
>PRK13360 omega amino acid--pyruvate transaminase; Provisional
Probab=99.54 E-value=1.9e-12 Score=119.68 Aligned_cols=218 Identities=15% Similarity=0.109 Sum_probs=133.0
Q ss_pred HHHhhhC--CCccEEEEeCC-CCCCccC-CCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccC
Q 044773 3 QLAQKRH--LKVKGVLVTNP-SNPLGTT-MSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENT 78 (289)
Q Consensus 3 ~~~~~~~--~~~~~i~l~~p-~NPtG~~-~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (289)
++++... .++.+ ++..| ....|.. .+.+.+++|.++|++||+++|+||++.+++..|..+.. +..
T Consensus 205 e~~l~~~~~~~~aa-vivEpi~g~~G~~~~~~~fl~~lr~lc~~~g~llI~DEv~tG~GrtG~~~a~--~~~-------- 273 (442)
T PRK13360 205 ERLVTLHDASTIAA-VIVEPVAGSTGVLIPPKGYLQRLREICDKHGILLIFDEVITGFGRLGAPFAA--QYF-------- 273 (442)
T ss_pred HHHHHhcCCCcEEE-EEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCCCccchhh--hhc--------
Confidence 4555432 23444 55556 5556765 57889999999999999999999999887666554211 111
Q ss_pred CCCCceEEEecCccccCCCC-ceEEEEEecCHHHHHHHHh---------ccccCCCChHHHHHHHHHhCCchHHHHHHHH
Q 044773 79 EVWNRVHIVYSLSKDLGLPG-FRVGAIYSNDDTVVAAATK---------MSSFGLVSSQTQYLLSALLSDKKFAQNYISE 148 (289)
Q Consensus 79 d~~~~~i~i~s~sK~~g~~G-~r~G~i~~~~~~~~~~~~~---------~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~ 148 (289)
+...-+.+|+|.++ .| +++|.+++++ .+.+.+.. ....+..+++...++.+.|+.. .+ ..
T Consensus 274 ---gv~PDivt~gK~l~-gG~~P~gav~~~~-~i~~~~~~~~~~~~~~~~~~T~~g~pl~~aaa~a~L~~l---~~--~~ 343 (442)
T PRK13360 274 ---GVTPDLLTCAKGLT-NGAIPMGAVFVSS-EIHDAFMQGPEAGIEFFHGYTYSGHPLACAAALATLDLY---ER--EG 343 (442)
T ss_pred ---CCCCceeeeeeccc-cCccceEEEEEcH-HHHHHhhcCCccccccccCCCCCCCHHHHHHHHHHHHHH---Hh--CC
Confidence 11122458999998 66 8999999954 44444321 1122336777777766666532 11 13
Q ss_pred HHHHHHHHHHHHHHHHHhc-CCcee-c-CCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeE
Q 044773 149 NKKRLKQRHRKLVSGLEKA-GISCL-K-SNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWF 225 (289)
Q Consensus 149 ~~~~~~~~~~~l~~~l~~~-g~~~~-~-~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~ 225 (289)
..++.+++.+++.+.|+++ ..... . ..-|++.-+.+....... .....++...++ +.||.+.++ ...+
T Consensus 344 l~~~~~~~g~~l~~~l~~l~~~~~v~~vrG~Gl~~~~~l~~~~~~~-~~~~~~~~~~l~-~~Gvl~~~~-------~~~l 414 (442)
T PRK13360 344 LLTRAARLAPYWEDALHSLRDAPHVIDIRNLGLVGAVELAPRDGKP-GKRAYEVFLKCF-EKGLMIRYT-------GDIL 414 (442)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCCeeeeeccceEEEEEEecCCCCc-chhHHHHHHHHH-HCCcEEEec-------CCEE
Confidence 4456666666677777654 12111 1 112334344443211111 012235666665 669998753 1469
Q ss_pred EEEEec-CCHHHHHHHHHHHHHHHHH
Q 044773 226 RVCFAN-MSEDTLKLSMQRLKAFVDS 250 (289)
Q Consensus 226 Ris~~~-~~~e~l~~~l~~l~~~l~~ 250 (289)
||++.. ++++++++++++|.+++++
T Consensus 415 r~~Ppl~~t~~eid~~~~~l~~~l~~ 440 (442)
T PRK13360 415 ALSPPLIIEEAQIDELFDILAQALKE 440 (442)
T ss_pred EEeCCCccCHHHHHHHHHHHHHHHHH
Confidence 999854 7999999999999998865
No 260
>PRK05965 hypothetical protein; Provisional
Probab=99.54 E-value=1.7e-12 Score=120.56 Aligned_cols=222 Identities=14% Similarity=0.122 Sum_probs=136.1
Q ss_pred HHHhhhC--CCccEEEEeCCCCCCcc-CCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCC
Q 044773 3 QLAQKRH--LKVKGVLVTNPSNPLGT-TMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTE 79 (289)
Q Consensus 3 ~~~~~~~--~~~~~i~l~~p~NPtG~-~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d 79 (289)
++.+... .++-+|++...+.-.|. +.+.+.+++|.++|++||+++|.||++.+++.+|..+.. +.
T Consensus 205 ~~~i~~~~~~~iAAvIvEPiqg~gG~~~p~~~yl~~lr~lc~~~gillI~DEV~tGfGRtG~~~a~--~~---------- 272 (459)
T PRK05965 205 RAKVAELGADNVAAFFCEPIQGSGGVIVPPKGWLKAMREACRELGILFVADEVITGFGRTGPLFAC--EA---------- 272 (459)
T ss_pred HHHHHhcCCCceEEEEEeccccCCCCccCCHHHHHHHHHHHHHcCCEEEEechhccCccCchhhhH--hh----------
Confidence 4444432 34556555533655666 457789999999999999999999999998777654321 11
Q ss_pred CCCceEEEecCccccCCCC-ceEEEEEecCHHHHHHHHh---------ccccCCCChHHHHHHHHHhCCchHHHHHHHHH
Q 044773 80 VWNRVHIVYSLSKDLGLPG-FRVGAIYSNDDTVVAAATK---------MSSFGLVSSQTQYLLSALLSDKKFAQNYISEN 149 (289)
Q Consensus 80 ~~~~~i~i~s~sK~~g~~G-~r~G~i~~~~~~~~~~~~~---------~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~ 149 (289)
.+...-+.+++|.+| .| +++|.++++++ +.+.+.. ..+.+..|++...++.+.|+-.+- +..
T Consensus 273 -~gv~PDiv~~gKgl~-gG~~Pi~av~~~~~-i~~~~~~~~~~~~~~~h~~T~~gnpl~~Aaa~a~L~~l~~-----~~l 344 (459)
T PRK05965 273 -EGVVPDLMTVAKGLT-SGYVPMGAVLMSDH-VYQGIADGAGAAAPVGHGYTYSAHPVSAAVGLEVLRLYHE-----GGL 344 (459)
T ss_pred -cCCCCCeEEechhhc-cCCcceeEEEEcHH-HHHHHhccccccccccccCCCCCCHHHHHHHHHHHHHHHh-----ccH
Confidence 123344667899998 88 59999999654 4444321 112333778887776666653221 122
Q ss_pred HHHHHHHHHHHHHHHHhc---CCceecCCceEEEEEecCcccc-CCC----hhhHHHHHHHHHHhcCeEEeCCCCCCCCC
Q 044773 150 KKRLKQRHRKLVSGLEKA---GISCLKSNAGLFCWVDMRHLLS-SNT----FEAEMELWKKIVYDVKLNISPGSSCHCTE 221 (289)
Q Consensus 150 ~~~~~~~~~~l~~~l~~~---g~~~~~~~~g~~~~i~~~~~~~-~~~----~~~~~~~~~~ll~~~gi~v~pg~~f~~~~ 221 (289)
.++.++..++|.+.|+++ ++......-|+++.+++..... ... ......+...++ ++||.+.+. +
T Consensus 345 ~~~~~~~g~~l~~~l~~l~~~~~v~~vrG~Gl~~gie~~~~~~~~~~~~~~~~~~~~i~~~~~-~~Gll~~~~------g 417 (459)
T PRK05965 345 LANGQKAGPRFAAGLDALRAHPLVGDVRGRGLLGALELVADKATKTPFDAALDPADRIFDRAY-ANGLVFRAF------G 417 (459)
T ss_pred HHHHHHHHHHHHHHHHhhccCCCEEEEeecceEEEEEEeccccccCCCCchhHHHHHHHHHHH-hCCeEEEec------C
Confidence 334445555555555543 2211122235556666643211 000 011234555555 679998753 2
Q ss_pred CCeEEEEEec-CCHHHHHHHHHHHHHHHHHH
Q 044773 222 PGWFRVCFAN-MSEDTLKLSMQRLKAFVDSI 251 (289)
Q Consensus 222 ~~~~Ris~~~-~~~e~l~~~l~~l~~~l~~~ 251 (289)
...+|+.++. +++++++++++++.+++++.
T Consensus 418 ~~~i~~~PpL~it~~ei~~~~~~l~~~l~~~ 448 (459)
T PRK05965 418 DGVLGFAPALCCTEGEFDLIFERTRKTLDDV 448 (459)
T ss_pred CcEEEEECCCcCCHHHHHHHHHHHHHHHHHH
Confidence 3578999854 79999999999999999875
No 261
>PRK06938 diaminobutyrate--2-oxoglutarate aminotransferase; Provisional
Probab=99.53 E-value=1.4e-12 Score=121.07 Aligned_cols=213 Identities=15% Similarity=0.031 Sum_probs=131.4
Q ss_pred CccEEEEeCC-CCCCccC-CCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEe
Q 044773 11 KVKGVLVTNP-SNPLGTT-MSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVY 88 (289)
Q Consensus 11 ~~~~i~l~~p-~NPtG~~-~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~ 88 (289)
++-+ ++..| +.-.|.+ .+.+.++++.++|+++|+++|.||++.+++.+|..+.. + ..+...-+.
T Consensus 231 ~iAA-vI~EPiqg~gG~~~p~~~yl~~lr~lc~~~giLlI~DEV~tGfGRtG~~~a~--e-----------~~gv~PDiv 296 (464)
T PRK06938 231 LPAA-VILEVVQGEGGVIPAPIEWLRGLRRITEEAGIPLIVDEIQSGFGRTGKMFAF--E-----------HAGIIPDVV 296 (464)
T ss_pred ceEE-EEEccccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCcHHHHH--H-----------hcCCCCCEE
Confidence 3555 45556 5444664 56899999999999999999999999998666643211 1 123334466
Q ss_pred cCccccCCCCceEEEEEecCHHHHHHHHh--ccccCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 044773 89 SLSKDLGLPGFRVGAIYSNDDTVVAAATK--MSSFGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEK 166 (289)
Q Consensus 89 s~sK~~g~~G~r~G~i~~~~~~~~~~~~~--~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 166 (289)
+++|.+| .|+++|.++++++ + +.+.. ..+.+..|++...++.+.|+...- + ...++.++..+++.+.|++
T Consensus 297 ~~gKglg-gG~PlsAv~~~~~-~-~~~~~~~~~~T~~gnpla~Aaa~a~L~~l~~-~----~l~~~~~~~G~~l~~~L~~ 368 (464)
T PRK06938 297 VLSKAIG-GSLPLAVVVYREW-L-DTWQPGAHAGTFRGNQMAMAAGSATLRYIKE-H----RLAEHAAAMGERLREHLRQ 368 (464)
T ss_pred Eeecccc-CCCceEEEeehhH-h-hccCCCCCCCCCCcCHHHHHHHHHHHHHHHH-h----HHHHHHHHHHHHHHHHHHH
Confidence 7899998 8899999999654 3 33321 122334788887777777653321 1 2223333444444444443
Q ss_pred ----cCCceecCCceEEEEEecCccccC------C--ChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEEec-CC
Q 044773 167 ----AGISCLKSNAGLFCWVDMRHLLSS------N--TFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFAN-MS 233 (289)
Q Consensus 167 ----~g~~~~~~~~g~~~~i~~~~~~~~------~--~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ris~~~-~~ 233 (289)
+++......-|+++.+.+...... . ...-...+...++ ++||.+.++..+ ...+|+.++. ++
T Consensus 369 l~~~~~~i~~VrG~Glm~gie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~Gll~~~~g~~----~~~l~~~Ppl~it 443 (464)
T PRK06938 369 LQRDYPQLGDVRGRGLMLGVEIVDPQGEPDALGHPPANGELASLIQRECL-RRGLILELGGRH----GSVVRFLPPLIIT 443 (464)
T ss_pred HHHhCCCeeeeeccceEEEEEeccCcccccccccCCccHHHHHHHHHHHH-HCCeEEeecCCC----CCEEEEECCCccC
Confidence 333222233356666776432110 0 0011234566665 679999875322 2579998754 79
Q ss_pred HHHHHHHHHHHHHHHHH
Q 044773 234 EDTLKLSMQRLKAFVDS 250 (289)
Q Consensus 234 ~e~l~~~l~~l~~~l~~ 250 (289)
+++++.+++++.+++.+
T Consensus 444 ~~eid~~~~~l~~~l~~ 460 (464)
T PRK06938 444 AEQIDEVAEIFAEAVAA 460 (464)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999999998875
No 262
>TIGR01324 cysta_beta_ly_B cystathionine beta-lyase, bacterial. This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys.
Probab=99.53 E-value=1.4e-12 Score=118.18 Aligned_cols=204 Identities=14% Similarity=0.118 Sum_probs=121.6
Q ss_pred CCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEec
Q 044773 10 LKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVYS 89 (289)
Q Consensus 10 ~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~s 89 (289)
+++|+|++++|+||+|.+.+ +++|+++|+++|+++|+|++|+.... .. + . ..+.+++++|
T Consensus 134 ~~tklV~lesp~Np~g~~~d---l~~I~~la~~~g~~livD~t~a~g~~-~~---p-l------------~~gaDivv~S 193 (377)
T TIGR01324 134 PNTKVLFLEAPSSITFEIQD---IPAIAKAARNPGIVIMIDNTWAAGLL-FK---P-L------------EHGVDISIQA 193 (377)
T ss_pred CCceEEEEECCCCCCCcHHH---HHHHHHHHHHcCCEEEEECCCccccc-cC---c-c------------ccCceEEEec
Confidence 57999999999999987765 99999999999999999999985322 11 1 1 2356699999
Q ss_pred CccccC-CCCceEEEEEecCHHHHHHHHhccccCC-CChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 044773 90 LSKDLG-LPGFRVGAIYSNDDTVVAAATKMSSFGL-VSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEKA 167 (289)
Q Consensus 90 ~sK~~g-~~G~r~G~i~~~~~~~~~~~~~~~~~~~-~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 167 (289)
++|+++ .++.-.|+++++++...........++. .++.. +..++.. .+.+..+.++..++...+.+.|+++
T Consensus 194 ~tK~l~G~~d~~gG~v~~~~~~~~~l~~~~~~~G~~l~p~~---a~~~~rg----l~tl~~R~~~~~~~a~~la~~L~~~ 266 (377)
T TIGR01324 194 GTKYLVGHSDIMIGTVVANARTWDQLREHSYLMGQMVDADD---AYTTLRG----LRTLGVRLKQHQESSLAIAKWLSEQ 266 (377)
T ss_pred CceeccCCCCceEEEEEeCHHHHHHHHHHHHHhCCCCCHHH---HHHHHhh----hhhHHHHHHHHHHHHHHHHHHHHhC
Confidence 999996 3457789988865443333322222221 33333 3333332 1234455666777777788888876
Q ss_pred -CC-ceecC-----------------CceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCC---------
Q 044773 168 -GI-SCLKS-----------------NAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHC--------- 219 (289)
Q Consensus 168 -g~-~~~~~-----------------~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~--------- 219 (289)
.+ ++..| .+|++. +++.... .....++...| +-.++.+.-|.....
T Consensus 267 p~v~~v~yp~l~~~p~~~~~~~~~~~~g~~~s-~~l~~~~----~~~~~~~~~~l-~~~~~~~slG~~~sl~~~~~~~~~ 340 (377)
T TIGR01324 267 PEVARVLHPALPSCPGHEFWKRDFSGSSGLFS-FVLQRLT----QKQVHAFLDHL-QLFGLGYSWGGYESLALCNQPELG 340 (377)
T ss_pred CCcCEEECCCCCCCccHHHHHHhccCCCceEE-EEECCCC----HHHHHHHHHhC-CcceEeccCCCccceeecCCCCCC
Confidence 22 12211 244443 5554211 12223444443 233443222221110
Q ss_pred --------CCCCeEEEEEecCCHHHHHHHHHHHHHHHH
Q 044773 220 --------TEPGWFRVCFANMSEDTLKLSMQRLKAFVD 249 (289)
Q Consensus 220 --------~~~~~~Ris~~~~~~e~l~~~l~~l~~~l~ 249 (289)
..++.+|||++. |+.+++++.|.++++
T Consensus 341 ~~~~~~~~~~~~liR~svGl---E~~~dl~~dl~~al~ 375 (377)
T TIGR01324 341 HRPNIKRNLEGPLIRVHIGL---ENVDDLKADLKAGFE 375 (377)
T ss_pred HHHHHhccCCCCEEEEEeCC---CCHHHHHHHHHHHHh
Confidence 122579999997 667777777777765
No 263
>PRK06105 aminotransferase; Provisional
Probab=99.53 E-value=2.9e-12 Score=119.01 Aligned_cols=215 Identities=12% Similarity=0.096 Sum_probs=133.7
Q ss_pred CccEEEEeCC-CCCCccC-CCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEe
Q 044773 11 KVKGVLVTNP-SNPLGTT-MSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVY 88 (289)
Q Consensus 11 ~~~~i~l~~p-~NPtG~~-~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~ 88 (289)
++.+ ++..| +.-.|.. .+++.+++|.++|++||+++|+||++.+++..|..+. .+.. +...-+.
T Consensus 218 ~iAa-vIvEPiqg~gG~~~~~~~yl~~lr~lc~~~~~llI~DEv~tG~GRtG~~f~--~~~~-----------~v~PDi~ 283 (460)
T PRK06105 218 TIAA-FIGEPVMGAGGVIVPPKTYWEKIQAVLRKYDILLVADEVICGFGRTGNMFG--CETF-----------GIKPDIL 283 (460)
T ss_pred ceEE-EEEccccCCCCCccCCHHHHHHHHHHHHHcCCeEEEeccccCCCcCchhhh--HHhc-----------CCCCCee
Confidence 4555 55556 5555665 5888999999999999999999999998876665432 1111 2223366
Q ss_pred cCccccCCCC-ceEEEEEecCHHHHHHHHhc---------cccCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHH
Q 044773 89 SLSKDLGLPG-FRVGAIYSNDDTVVAAATKM---------SSFGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHR 158 (289)
Q Consensus 89 s~sK~~g~~G-~r~G~i~~~~~~~~~~~~~~---------~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 158 (289)
+++|.+| .| +++|.++++ +.+.+.+... ...+..|++...++.+.|+...- .+..++.++..+
T Consensus 284 ~~gK~lg-gG~~P~~av~~~-~~i~~~~~~~~~~~~~~~h~~T~~gnpl~~aaa~a~L~~i~~-----~~l~~~v~~~g~ 356 (460)
T PRK06105 284 VMSKQLS-SSYQPLSAVLMN-EKVYDPIADESGKIGTFGHGFTASGHPVAAAVALENLAIIEE-----RDLVGNAAERGA 356 (460)
T ss_pred eeecccc-cCcccceEEEEc-HHHHHHHhcccccCcccccCCCCCCCHHHHHHHHHHHHHHHh-----ccHHHHHHHHHH
Confidence 8999998 66 699999995 4455544321 12233677777776666653221 123344455555
Q ss_pred HHHHHHHhc---CCceecCCceEEEEEecCcccc-CCCh----hhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEEe
Q 044773 159 KLVSGLEKA---GISCLKSNAGLFCWVDMRHLLS-SNTF----EAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFA 230 (289)
Q Consensus 159 ~l~~~l~~~---g~~~~~~~~g~~~~i~~~~~~~-~~~~----~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ris~~ 230 (289)
+|.+.|+++ ++......-|.+..+++..... ...+ .-...+...++ ++||.+.|. + ..+||+++
T Consensus 357 ~l~~~L~~l~~~~~v~~vrG~Gl~~gie~~~~~~~~~~~~~~~~~a~~i~~~~~-~~Gvl~~~~---g----~~i~l~Pp 428 (460)
T PRK06105 357 RLQARLRALADHPLVGEVRGVGLIAAVELVADKATKTPFEPPGKVGARANAAAH-EHGVISRAM---G----DTLAFCPP 428 (460)
T ss_pred HHHHHHHHhhcCCCeEEEEecceEEEEEEecCcccCCCCCchhHHHHHHHHHHH-HCCeEEEec---C----CEEEEECC
Confidence 555555443 2222222225565566642211 0000 11234555555 779999863 1 37999986
Q ss_pred c-CCHHHHHHHHHHHHHHHHHHHHh
Q 044773 231 N-MSEDTLKLSMQRLKAFVDSITTT 254 (289)
Q Consensus 231 ~-~~~e~l~~~l~~l~~~l~~~~~~ 254 (289)
. .++++++++++++.+++++....
T Consensus 429 l~it~~eid~~~~~l~~~l~~~~~~ 453 (460)
T PRK06105 429 LIITAAQVDEMVDRFGRALDDVAAW 453 (460)
T ss_pred CccCHHHHHHHHHHHHHHHHHHHHH
Confidence 4 69999999999999999887653
No 264
>KOG1412 consensus Aspartate aminotransferase/Glutamic oxaloacetic transaminase AAT2/GOT1 [Amino acid transport and metabolism]
Probab=99.53 E-value=2.9e-12 Score=108.53 Aligned_cols=217 Identities=17% Similarity=0.260 Sum_probs=154.7
Q ss_pred hhCCCccEEEEeCC-CCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCc--cChhhhhhccccccCCCCCc
Q 044773 7 KRHLKVKGVLVTNP-SNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGF--VSIMEILKDRNCENTEVWNR 83 (289)
Q Consensus 7 ~~~~~~~~i~l~~p-~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~--~~~~~~~~~~~~~~~d~~~~ 83 (289)
+..|.-..++++.| |||||+-.++|++++|++..+..+.+.+.|-+|+++.-+.... ..+...+. ....
T Consensus 173 ~~APe~si~iLhaCAhNPTGmDPT~EQW~qia~vik~k~lf~fFDiAYQGfASGD~~~DawAiR~fV~--------~g~e 244 (410)
T KOG1412|consen 173 ESAPEGSIIILHACAHNPTGMDPTREQWKQIADVIKSKNLFPFFDIAYQGFASGDLDADAWAIRYFVE--------QGFE 244 (410)
T ss_pred hhCCCCcEEeeeccccCCCCCCCCHHHHHHHHHHHHhcCceeeeehhhcccccCCccccHHHHHHHHh--------cCCe
Confidence 34444445577777 9999999999999999999999999999999999975433222 22233332 3355
Q ss_pred eEEEecCccccCCCCceEEEEE--ecCHHHHHHHH------hccccCCCChHHHHHHHHHhCCchHHHHH---HHHHHHH
Q 044773 84 VHIVYSLSKDLGLPGFRVGAIY--SNDDTVVAAAT------KMSSFGLVSSQTQYLLSALLSDKKFAQNY---ISENKKR 152 (289)
Q Consensus 84 ~i~i~s~sK~~g~~G~r~G~i~--~~~~~~~~~~~------~~~~~~~~~~~~q~~~~~~l~~~~~~~~~---~~~~~~~ 152 (289)
.++..||+|-||+.+-|+|-+. ..+...+..+. ....++.++..+..+++..|..+++-++| ++.+..+
T Consensus 245 ~fv~QSFaKNfGlYneRvGnltvv~~n~a~i~~v~SQl~lviR~~~SNPPAyGArIV~kvL~tP~lre~W~~sik~MssR 324 (410)
T KOG1412|consen 245 LFVCQSFAKNFGLYNERVGNLTVVVNNPAVIAGVKSQLTLVIRSNWSNPPAYGARIVHKVLSTPELREQWIQSIKTMSSR 324 (410)
T ss_pred EEEEhhhhhhcccccccccceEEEecChhHHHHHHHHHHHHHhhccCCCcchhhHHHHHHhcCHHHHHHHHHHHHHHHHH
Confidence 7889999999999999999874 44444433222 12334446667888899999988763444 4556678
Q ss_pred HHHHHHHHHHHHHhcC----CceecCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEE
Q 044773 153 LKQRHRKLVSGLEKAG----ISCLKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVC 228 (289)
Q Consensus 153 ~~~~~~~l~~~l~~~g----~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ris 228 (289)
+++.+..|++.|..++ |.-...+.|+|.+-.+.. ...+.|.+.+.|++.+- | ||+
T Consensus 325 I~~MR~aLrd~L~aL~TPGtWDHI~~QiGMFSyTGLtp-----------~qV~~li~~h~vyLl~~--------G--RIn 383 (410)
T KOG1412|consen 325 IKKMRTALRDHLVALKTPGTWDHITQQIGMFSYTGLTP-----------AQVDHLIENHKVYLLSD--------G--RIN 383 (410)
T ss_pred HHHHHHHHHHHHHhcCCCCcHHHHHhhccceeecCCCH-----------HHHHHHHHhceEEEecC--------C--cEe
Confidence 8888888888888873 444567788888765442 36777888999998863 2 899
Q ss_pred EecCCHHHHHHHHHHHHHHHHHHH
Q 044773 229 FANMSEDTLKLSMQRLKAFVDSIT 252 (289)
Q Consensus 229 ~~~~~~e~l~~~l~~l~~~l~~~~ 252 (289)
.+.++...++-...++.+.++..+
T Consensus 384 isGLN~~NveyVAkAIde~Vr~~~ 407 (410)
T KOG1412|consen 384 ISGLNMKNVEYVAKAIDETVRAIK 407 (410)
T ss_pred eeccccccHHHHHHHHHHHHHhhc
Confidence 976677777777777766665543
No 265
>PRK06062 hypothetical protein; Provisional
Probab=99.52 E-value=1.5e-12 Score=120.75 Aligned_cols=221 Identities=13% Similarity=0.081 Sum_probs=130.9
Q ss_pred HHHhhhC--CCccEEEEeCC-CCCCccC-CCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccC
Q 044773 3 QLAQKRH--LKVKGVLVTNP-SNPLGTT-MSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENT 78 (289)
Q Consensus 3 ~~~~~~~--~~~~~i~l~~p-~NPtG~~-~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (289)
++++... .++.+ ++..| ..-.|.+ .+.+.+++|.++|+++|+++|+||++.+++..|..+. .+..
T Consensus 204 e~~l~~~~~~~iAa-viiEPv~g~gG~~~p~~~yl~~lr~lc~~~g~lLI~DEV~tGfGRtG~~~a--~~~~-------- 272 (451)
T PRK06062 204 ERVIELEGPSTIAA-ILLESVPGTAGILVPPPGYLAGVRELCDRHGIVLIADEVMAGFGRTGKWFA--IEHF-------- 272 (451)
T ss_pred HHHHHhcCCCceEE-EEEccccCCCCcccCCHHHHHHHHHHHHHcCCEEEeeccccCCCcCcHHHH--HHhc--------
Confidence 4455432 24555 44456 5555666 4788999999999999999999999998755554321 1111
Q ss_pred CCCCceEEEecCccccCCCC-ceEEEEEecCHHHHHHHHhc----cccCCCChHHHHHHHHHhCCchHHHHHHHHHHHHH
Q 044773 79 EVWNRVHIVYSLSKDLGLPG-FRVGAIYSNDDTVVAAATKM----SSFGLVSSQTQYLLSALLSDKKFAQNYISENKKRL 153 (289)
Q Consensus 79 d~~~~~i~i~s~sK~~g~~G-~r~G~i~~~~~~~~~~~~~~----~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~ 153 (289)
+...-+.+|+|.+| .| +++|.+++++ .+.+.+... ...+..|++...++.+.|+...- + ...++.
T Consensus 273 ---gv~PDi~t~gK~lg-gG~~Pigav~~~~-~i~~~~~~~~~~~~~T~~gnpl~~Aaa~a~L~~l~~-~----~l~~~~ 342 (451)
T PRK06062 273 ---GVVPDLITFAKGVN-SGYVPLGGVAISE-AIAATFADRPYPGGLTYSGHPLACAAAVATINAMEE-E----GIVENA 342 (451)
T ss_pred ---CCCCCeeeechhhh-cCCcCcEEEEEcH-HHHHHhccCCCCCCCCCCCCHHHHHHHHHHHHHHHh-c----CHHHHH
Confidence 22223668999998 78 4999999965 555555321 11333677777776666653221 1 123333
Q ss_pred HHHH-HHHHHHHHhc----CCceecCCceEEEEEecCcccc-CCCh-------hhHHHHHHHHHHhcCeEEeCCCCCCCC
Q 044773 154 KQRH-RKLVSGLEKA----GISCLKSNAGLFCWVDMRHLLS-SNTF-------EAEMELWKKIVYDVKLNISPGSSCHCT 220 (289)
Q Consensus 154 ~~~~-~~l~~~l~~~----g~~~~~~~~g~~~~i~~~~~~~-~~~~-------~~~~~~~~~ll~~~gi~v~pg~~f~~~ 220 (289)
++.. +++.+.|+++ +.......-|++..+.+..... ...+ .....+...++ +.||.+.+.
T Consensus 343 ~~~G~~~l~~~L~~l~~~~~~v~~vrG~Gl~~gve~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gvl~~~~------ 415 (451)
T PRK06062 343 ARIGAEVLGPGLRELAERHPSVGEVRGLGVFWALELVADRETREPLAPYGASSAAMAAVKAACK-ERGLLPFVN------ 415 (451)
T ss_pred HHHHHHHHHHHHHHHHhcCCcEEeEeccccEEEEEEcccccccCCCcccchhhHHHHHHHHHHH-HCCcEEeec------
Confidence 3333 2344444432 3211112224555566542111 0000 01234666665 679997652
Q ss_pred CCCeEEEEEec-CCHHHHHHHHHHHHHHHHHHH
Q 044773 221 EPGWFRVCFAN-MSEDTLKLSMQRLKAFVDSIT 252 (289)
Q Consensus 221 ~~~~~Ris~~~-~~~e~l~~~l~~l~~~l~~~~ 252 (289)
.+.+||+++. +++++++++++++.+++++..
T Consensus 416 -~~~lrl~ppl~~t~~eid~~~~~l~~~l~~~~ 447 (451)
T PRK06062 416 -GNRIHVVPPCTVTEDEVREGLAILDAALAVAD 447 (451)
T ss_pred -CCEEEEECCccCCHHHHHHHHHHHHHHHHHhh
Confidence 2478998853 799999999999999998754
No 266
>PRK07481 hypothetical protein; Provisional
Probab=99.52 E-value=3.3e-12 Score=118.40 Aligned_cols=213 Identities=15% Similarity=0.091 Sum_probs=129.6
Q ss_pred CccEEEEeCCCCCCccC-CCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEec
Q 044773 11 KVKGVLVTNPSNPLGTT-MSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVYS 89 (289)
Q Consensus 11 ~~~~i~l~~p~NPtG~~-~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~s 89 (289)
++-+|++...+.-.|.. .+.+.+++|.++|+++|+++|.||++.+++.+|..+.. +. .+...-+.+
T Consensus 213 ~iAAviiEPvqg~gG~~~~~~~fl~~lr~lc~~~g~llI~DEV~tGfGRtG~~~a~--~~-----------~gv~PDiv~ 279 (449)
T PRK07481 213 TIAAFIAEPVQGAGGVIVPPANFWPLVREVCDRHGILLIADEVVTGFGRTGSWFGS--RG-----------WGVKPDIMC 279 (449)
T ss_pred cEEEEEEecccCCcCCccCCHHHHHHHHHHHHHcCCEEEEeehhhCcCcCchhhHh--hh-----------cCCCCCEEE
Confidence 45565554335555664 57889999999999999999999999988666653221 11 122233566
Q ss_pred CccccCCCC-ceEEEEEecCHHHHHHHHh---------ccccCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHH
Q 044773 90 LSKDLGLPG-FRVGAIYSNDDTVVAAATK---------MSSFGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRK 159 (289)
Q Consensus 90 ~sK~~g~~G-~r~G~i~~~~~~~~~~~~~---------~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 159 (289)
++|.+| .| +++|.+++++ .+.+.+.. ..+.+..|++...++.+.|+...- ....++.++..++
T Consensus 280 ~gKgl~-gG~~Pi~av~~~~-~i~~~~~~~~~~~~~~~h~~T~~gnpl~~aaa~a~L~~l~~-----~~l~~~~~~~g~~ 352 (449)
T PRK07481 280 LAKGIT-SGYVPLGATMVNA-RIADAFEANADFGGAIMHGYTYSGHPVACAAALATLDIVVR-----EDLPANAAKRGAY 352 (449)
T ss_pred Eeeccc-CCCcCceEEEEcH-HHHHHHhccCccccccccCCCCCCCHHHHHHHHHHHHHHHh-----hhHHHHHHHHHHH
Confidence 899998 78 6999999954 45554432 112333678877777666653221 1223334444444
Q ss_pred HHHHHHhc----CCceecCCceEEEEEecCcccc-CCC----hhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEEe
Q 044773 160 LVSGLEKA----GISCLKSNAGLFCWVDMRHLLS-SNT----FEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFA 230 (289)
Q Consensus 160 l~~~l~~~----g~~~~~~~~g~~~~i~~~~~~~-~~~----~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ris~~ 230 (289)
+.+.|+++ ++......-|.++.+.+..... ... ......+...++ +.||.+.+.. ..+||+++
T Consensus 353 l~~~L~~l~~~~~~i~~vrG~Glm~gi~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~Gvl~~~~g-------~~i~l~Pp 424 (449)
T PRK07481 353 LLEGLQPLKERFELVGDVRGKGLMLALDLVADKATREPIDPSKGYANAVADVAR-ENGVLVRPSG-------TKIILSPP 424 (449)
T ss_pred HHHHHHHHhhcCCCeEEEeecceEEEEEecccccccCCCCchhHHHHHHHHHHH-hCCeEEEecC-------CEEEEECC
Confidence 55555443 3222222234566666643211 100 111234555555 6799998642 25899986
Q ss_pred c-CCHHHHHHHHHHHHHHHHHH
Q 044773 231 N-MSEDTLKLSMQRLKAFVDSI 251 (289)
Q Consensus 231 ~-~~~e~l~~~l~~l~~~l~~~ 251 (289)
. +++++++++++++.+++++.
T Consensus 425 l~it~~eid~~~~~l~~~l~~~ 446 (449)
T PRK07481 425 LVIQREDVDRIVDALDAGLSAV 446 (449)
T ss_pred CCCCHHHHHHHHHHHHHHHHhc
Confidence 4 69999999999999998754
No 267
>PRK09221 beta alanine--pyruvate transaminase; Provisional
Probab=99.52 E-value=2.8e-12 Score=118.62 Aligned_cols=220 Identities=15% Similarity=0.137 Sum_probs=134.0
Q ss_pred HHHhhhC--CCccEEEEeCCCCCCccCC-CHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCC
Q 044773 3 QLAQKRH--LKVKGVLVTNPSNPLGTTM-SRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTE 79 (289)
Q Consensus 3 ~~~~~~~--~~~~~i~l~~p~NPtG~~~-~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d 79 (289)
++++... .++.+|++.....-.|... +.+.+++|.++|+++|+++|+||++.+++.+|..+. .+..
T Consensus 208 ~~~i~~~~~~~iAavi~Epv~g~~G~~~~~~~yl~~l~~lc~~~g~llI~DEV~tG~GRtG~~~~--~~~~--------- 276 (445)
T PRK09221 208 ERLVALHDASTIAAVIVEPMAGSAGVLVPPKGYLQRLREICDKHGILLIFDEVITGFGRLGAAFA--AERF--------- 276 (445)
T ss_pred HHHHHhcCCCcEEEEEEecccCCCCcccCCHHHHHHHHHHHHHcCCEEEEeehhhCCCcCchhhH--HHhc---------
Confidence 4445433 2455545443366667754 677999999999999999999999998766555321 1111
Q ss_pred CCCceEEEecCccccCCCC-ceEEEEEecCHHHHHHHHh---------ccccCCCChHHHHHHHHHhCCchHHHHHHHHH
Q 044773 80 VWNRVHIVYSLSKDLGLPG-FRVGAIYSNDDTVVAAATK---------MSSFGLVSSQTQYLLSALLSDKKFAQNYISEN 149 (289)
Q Consensus 80 ~~~~~i~i~s~sK~~g~~G-~r~G~i~~~~~~~~~~~~~---------~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~ 149 (289)
+...-+.+++|.++ .| +++|.+++++ .+.+.+.. ....+..+++...++.+.|+... + ...
T Consensus 277 --gv~PDi~~~gK~l~-gG~~Pi~av~~~~-~i~~~~~~~~~~~~~~~~~~T~~~~pl~~aaa~a~L~~i~---~--~~l 347 (445)
T PRK09221 277 --GVTPDIITFAKGLT-NGAIPMGAVIASD-EIYDAFMQGPEYAIEFFHGYTYSAHPVACAAGLATLDIYR---E--EDL 347 (445)
T ss_pred --CCCCCEEEeccccc-cCcccceeeEEcH-HHHHhhccCcccccccccccCCCcCHHHHHHHHHHHHHHH---h--ccH
Confidence 11112568999998 66 7899999954 44444321 11123367777666655554321 1 134
Q ss_pred HHHHHHHHHHHHHHHHhc-CCce-e-cCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEE
Q 044773 150 KKRLKQRHRKLVSGLEKA-GISC-L-KSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFR 226 (289)
Q Consensus 150 ~~~~~~~~~~l~~~l~~~-g~~~-~-~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~R 226 (289)
.++.++..+++.+.|+++ +... . ...-|....+.+........ ....++...++ +.||.+.++ ...+|
T Consensus 348 ~~~~~~~g~~l~~~l~~l~~~~~v~~vrg~Gl~~~v~~~~~~~~~~-~~~~~~~~~~~-~~Gv~~~~~-------~~~lr 418 (445)
T PRK09221 348 FERAAELAPYFEDAVHSLKGLPHVIDIRNIGLVAGIELAPRPGAPG-ARGYEAFMKCF-EKGLLVRYT-------GDTIA 418 (445)
T ss_pred HHHHHHHHHHHHHHHHhhccCCCEEEEecCceEEEEEEeccccccc-chHHHHHHHHH-HCCeEEeec-------CCEEE
Confidence 556677777777777664 2211 1 11124455555543211100 11234666665 669998753 24799
Q ss_pred EEEec-CCHHHHHHHHHHHHHHHHHH
Q 044773 227 VCFAN-MSEDTLKLSMQRLKAFVDSI 251 (289)
Q Consensus 227 is~~~-~~~e~l~~~l~~l~~~l~~~ 251 (289)
|++.. ++++++++++++|.+++++.
T Consensus 419 ~~Ppl~~t~~eid~~~~~l~~~l~~~ 444 (445)
T PRK09221 419 LSPPLIIEKAQIDELVDALGDALRAV 444 (445)
T ss_pred EECCccCCHHHHHHHHHHHHHHHHhh
Confidence 99854 79999999999999998653
No 268
>PRK08742 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional
Probab=99.51 E-value=3.4e-12 Score=118.67 Aligned_cols=221 Identities=15% Similarity=0.086 Sum_probs=132.7
Q ss_pred HHHhhhC-CCccEEEEeCC--CCCCcc-CCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccC
Q 044773 3 QLAQKRH-LKVKGVLVTNP--SNPLGT-TMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENT 78 (289)
Q Consensus 3 ~~~~~~~-~~~~~i~l~~p--~NPtG~-~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (289)
++++..+ .++-+ ++..| ++-.|. ..+++.++++.++|+++|+++|.||++.+++.+|..+.. +.
T Consensus 227 ~~~~~~~~~~iAA-vI~EPviqg~gG~~~~p~~fl~~lr~lc~~~gillI~DEV~TGfGRtG~~~a~--e~--------- 294 (472)
T PRK08742 227 QALFEQSPGEICA-LILEPRLQCAGGMRMHHPAYLRRARELCDAHGAFLIADEIATGFGRTGTLFAC--EQ--------- 294 (472)
T ss_pred HHHHHhCCCceEE-EEEccccccCCCcccCCHHHHHHHHHHHHHcCCEEEEechhhCCCCCccchHH--Hh---------
Confidence 4455433 34555 44555 555576 567889999999999999999999999998776654322 11
Q ss_pred CCCCceEEEecCccccCCCC-ceEEEEEecCHHHHHHHHh--------ccccCCCChHHHHHHHHHhCCchH--HHHHHH
Q 044773 79 EVWNRVHIVYSLSKDLGLPG-FRVGAIYSNDDTVVAAATK--------MSSFGLVSSQTQYLLSALLSDKKF--AQNYIS 147 (289)
Q Consensus 79 d~~~~~i~i~s~sK~~g~~G-~r~G~i~~~~~~~~~~~~~--------~~~~~~~~~~~q~~~~~~l~~~~~--~~~~~~ 147 (289)
.+...-+.+++|.+| .| +++|.+++++ .+.+.+.. ..+.+..|++...++.+.|+-..- +.+..+
T Consensus 295 --~gv~PDiv~~gKgl~-gG~~Plaav~~~~-ei~~~~~~~~~~~~~~h~~T~~gnpl~~Aaa~a~L~~i~~~~l~~~~~ 370 (472)
T PRK08742 295 --AGVMPDLLCLSKGLT-GGFLPLSAVLATQ-QLYDAFLDDSRERAFLHSHSYTGNPLACAAALATLDIFADDDVIARNQ 370 (472)
T ss_pred --cCCCCCEEEEccccc-CCCCCcceeeccH-HHHHHhhccCccCccCcCCCCCccHHHHHHHHHHHHHHHHCCHHHHHH
Confidence 123344666899998 88 5999999954 44444321 112333677777776666653221 022222
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCceecCCceEEEEEecCccccC-CChh----hHHHHHHHHHHhcCeEEeCCCCCCCCCC
Q 044773 148 ENKKRLKQRHRKLVSGLEKAGISCLKSNAGLFCWVDMRHLLSS-NTFE----AEMELWKKIVYDVKLNISPGSSCHCTEP 222 (289)
Q Consensus 148 ~~~~~~~~~~~~l~~~l~~~g~~~~~~~~g~~~~i~~~~~~~~-~~~~----~~~~~~~~ll~~~gi~v~pg~~f~~~~~ 222 (289)
++-+.++ .+.+.+.++++......-|+++.+.+...... ..+. -...+...++ +.||.+.+. +
T Consensus 371 ~~g~~l~----~~~~~~~~~~~i~dvRG~Gl~~giel~~~~~~~~~~~~~~~~~~~~~~~~~-~~Gll~~~~---g---- 438 (472)
T PRK08742 371 PTAARMT----QLAAQIGEHPHVADVRQAGMVVAFELTRGGNKRTPFPPAARVGLHAYRAAL-ARGVVLRPL---G---- 438 (472)
T ss_pred HHHHHHH----HHHHHHhcCCCeeeEeccceEEEEEeccCccccccCCchhHHHHHHHHHHH-HCCeEEEec---C----
Confidence 2222232 23333333332112222355666766432111 1100 1134555555 679999863 1
Q ss_pred CeEEEEEec-CCHHHHHHHHHHHHHHHHHH
Q 044773 223 GWFRVCFAN-MSEDTLKLSMQRLKAFVDSI 251 (289)
Q Consensus 223 ~~~Ris~~~-~~~e~l~~~l~~l~~~l~~~ 251 (289)
+.+||.++. .+++++++++++|.+++++.
T Consensus 439 ~vi~~~PpL~it~~ei~~~~~~l~~~l~~~ 468 (472)
T PRK08742 439 DVLYWMPPYCVDEAQLALLADTTRHAIDEA 468 (472)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHHHHH
Confidence 479999964 79999999999999999864
No 269
>PRK06917 hypothetical protein; Provisional
Probab=99.51 E-value=5.3e-12 Score=116.90 Aligned_cols=228 Identities=15% Similarity=0.140 Sum_probs=136.5
Q ss_pred HHHhhhC--CCccEEEEeCC-C-CCCcc-CCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhcccccc
Q 044773 3 QLAQKRH--LKVKGVLVTNP-S-NPLGT-TMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCEN 77 (289)
Q Consensus 3 ~~~~~~~--~~~~~i~l~~p-~-NPtG~-~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (289)
++++..+ .++-+|++. | . |-.|. ..+.+.+++|.++|+++|+++|.||++.+++.+|..+.. +..
T Consensus 189 e~~i~~~~~~~iAAvi~E-Pi~g~~gG~~~p~~~fl~~lr~lc~~~g~llI~DEv~tGfGRtG~~~a~--~~~------- 258 (447)
T PRK06917 189 ETAIERIGAEHIAAFIAE-PIIGAAGAAVVPPKGYYKVIKEICDHYDILFIADEVMTGLGRTGAMFAM--EHW------- 258 (447)
T ss_pred HHHHHhcCCCceEEEEEe-ccccCcCceecCCHHHHHHHHHHHHHcCCEEEEechhhCcCcccchhhH--Hhc-------
Confidence 4455443 245564544 6 4 34444 567889999999999999999999999987555543211 111
Q ss_pred CCCCCceEEEecCccccCCCCc-eEEEEEecCHHHHHHHHhc------cccCCCChHHHHHHHHHhCCchHHHHHHHHHH
Q 044773 78 TEVWNRVHIVYSLSKDLGLPGF-RVGAIYSNDDTVVAAATKM------SSFGLVSSQTQYLLSALLSDKKFAQNYISENK 150 (289)
Q Consensus 78 ~d~~~~~i~i~s~sK~~g~~G~-r~G~i~~~~~~~~~~~~~~------~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~ 150 (289)
+...-+.+++|.+| .|. ++|.+++++ .+.+.+... .+.+..|++...++.+.|+...- ....
T Consensus 259 ----gv~PDi~~~gK~l~-~G~~Pi~a~~~~~-~i~~~~~~~~~~~~~~~T~~gnpl~~aaa~a~l~~l~~-----~~l~ 327 (447)
T PRK06917 259 ----GVEPDIMTLGKGLG-AGYTPIAATVVSD-RVMEPILRGSRSIMSGHTLSANPLSAATALAVLEYMEK-----HNLP 327 (447)
T ss_pred ----CCCCCEEEeeehhc-cCCcceEEEEEcH-HHHHHHhccCcccccccCCCCCHHHHHHHHHHHHHHHH-----CCHH
Confidence 11122567899998 885 999999954 555544321 12233677777776666653211 1233
Q ss_pred HHHHHHHHHHHHHHHhc----CCceecCCceEEEEEecCcccc-CCC----hhhHHHHHHHHHHhcCeEEeCCCC-CCCC
Q 044773 151 KRLKQRHRKLVSGLEKA----GISCLKSNAGLFCWVDMRHLLS-SNT----FEAEMELWKKIVYDVKLNISPGSS-CHCT 220 (289)
Q Consensus 151 ~~~~~~~~~l~~~l~~~----g~~~~~~~~g~~~~i~~~~~~~-~~~----~~~~~~~~~~ll~~~gi~v~pg~~-f~~~ 220 (289)
++++++.++|.+.|+++ ++......-|.++.+.+..... ... ..-...+...++ ++||.+.|+.. ....
T Consensus 328 ~~~~~~g~~l~~~L~~l~~~~~~i~~vrG~Gl~~~ie~~~~~~~~~~~~~~~~~~~~~~~~~~-~~Gvl~~~~~~~~~g~ 406 (447)
T PRK06917 328 EKAAEKGEYLIKGLQKVQQQSTIIGDVRGKGLLIGVEFVADKKTKQPFSKSQAVASELISVAA-KNGLLLYPAVAGQDGK 406 (447)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCEEEEeecceEEEEEEeccCCcCCCCcchhHHHHHHHHHHH-hCCcEEEecccccCCC
Confidence 44555555555555543 3222222234555566532111 000 011234666665 67999987421 1111
Q ss_pred CCCeEEEEEec-CCHHHHHHHHHHHHHHHHHHH
Q 044773 221 EPGWFRVCFAN-MSEDTLKLSMQRLKAFVDSIT 252 (289)
Q Consensus 221 ~~~~~Ris~~~-~~~e~l~~~l~~l~~~l~~~~ 252 (289)
....+|++++. +++++++.+++++.+++++..
T Consensus 407 ~~~~i~l~Ppl~it~~eid~~~~~l~~~l~~~~ 439 (447)
T PRK06917 407 EGDAVIIAPPMTITYSELDELLSIFAKSVEEMM 439 (447)
T ss_pred CCCEEEEECCCcCCHHHHHHHHHHHHHHHHHHH
Confidence 23579999863 699999999999999998763
No 270
>PRK00615 glutamate-1-semialdehyde aminotransferase; Provisional
Probab=99.51 E-value=2.4e-12 Score=118.48 Aligned_cols=220 Identities=13% Similarity=0.112 Sum_probs=127.8
Q ss_pred hHHHhhhCC-CccEEEEeCC-CCCCccCC-CHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccC
Q 044773 2 YQLAQKRHL-KVKGVLVTNP-SNPLGTTM-SRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENT 78 (289)
Q Consensus 2 l~~~~~~~~-~~~~i~l~~p-~NPtG~~~-~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (289)
+++++..+. ++.+ ++..| ..-.|... +.+.+++|.++|++||+++|+||++.++ ..|.. ...+..
T Consensus 191 l~~~l~~~~~~~aa-vI~Epv~~~~G~~~p~~~yl~~l~~lc~~~g~llI~DEv~tG~-R~G~~--ga~~~~-------- 258 (433)
T PRK00615 191 FQTVMNSLGHRVAG-VIFEPICANMGVVLPKPGFIEGIIQTCRRTGSLSIMDEVVTGF-RVAQG--GAAAIY-------- 258 (433)
T ss_pred HHHHHHhcCCceEE-EEECCCCCCCCcccCCHHHHHHHHHHHHHcCCEEEEEcccccc-cccHh--HHHHhc--------
Confidence 455565443 3444 55556 55556655 5789999999999999999999999876 44432 111211
Q ss_pred CCCCceEEEecCccccCCCCceEEEEEecCHHHHHHHHhc-----cccCCCChHHHHHHHHHhCCchHHHHHHHHHHHHH
Q 044773 79 EVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDTVVAAATKM-----SSFGLVSSQTQYLLSALLSDKKFAQNYISENKKRL 153 (289)
Q Consensus 79 d~~~~~i~i~s~sK~~g~~G~r~G~i~~~~~~~~~~~~~~-----~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~ 153 (289)
+...-+.+++|.+| .|+++|+++++ +.+.+.+... .+.+..+++...++.+.|+-.. + ....+++
T Consensus 259 ---gv~PDi~~~gK~lg-gG~p~~av~~~-~~i~~~~~~~~~~~~~~T~~g~p~~~aa~la~L~~i~---~--~~~~~~~ 328 (433)
T PRK00615 259 ---HVKPDITVYGKILG-GGLPAAAVVAH-KSIMDHLAPEGTIFQAGTLSGNPLAMAAGKASINLCR---E--QGFYTQL 328 (433)
T ss_pred ---CCCCCeEEEccccc-CCcceeeeeec-HHHHhhhcCCCCcccCCCCcccHHHHHHHHHHHHHHh---c--ccHHHHH
Confidence 11122346899998 78999999995 4455544321 1122256666666655554321 1 1123344
Q ss_pred HHHHHHH----HHHHHhcCCceecCCceEEEEEecCccccC-------CChhhHHHHHHHHHHhcCeEEeCCCCCCCCCC
Q 044773 154 KQRHRKL----VSGLEKAGISCLKSNAGLFCWVDMRHLLSS-------NTFEAEMELWKKIVYDVKLNISPGSSCHCTEP 222 (289)
Q Consensus 154 ~~~~~~l----~~~l~~~g~~~~~~~~g~~~~i~~~~~~~~-------~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~ 222 (289)
+++.+++ .+.+.+.|+.+.....|.+..+.+...... ........+...|+ ++||.+.|.....
T Consensus 329 ~~~g~~l~~~l~~~~~~~g~~v~~~r~G~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~~~~~~~~~---- 403 (433)
T PRK00615 329 STLEQNFLSPIEEMIRSQGFPVSLVRYGSMFSFFFNENRPNNLAEAQLSDIEAFQTFYQSAF-SKGVYLSPSPFEA---- 403 (433)
T ss_pred HHHHHHHHHHHHHHHHHcCCCeEEEeeceEEEEEEeCCCCCChHHHhhCCHHHHHHHHHHHH-HCCeeecCccccc----
Confidence 4444444 444444454432222355555666532110 01112235777776 5699998754211
Q ss_pred CeEEEEEecCCHHHHHHHHHHHHHHHHHH
Q 044773 223 GWFRVCFANMSEDTLKLSMQRLKAFVDSI 251 (289)
Q Consensus 223 ~~~Ris~~~~~~e~l~~~l~~l~~~l~~~ 251 (289)
+ =++.. +++++++++++++.+++++.
T Consensus 404 -~-~ls~~-ht~~did~~~~a~~~~~~~~ 429 (433)
T PRK00615 404 -S-FLSSA-HSMENLDYAQNVLIDSLEKV 429 (433)
T ss_pred -c-ceecC-CCHHHHHHHHHHHHHHHHHH
Confidence 1 24555 69999999999999998864
No 271
>PRK06149 hypothetical protein; Provisional
Probab=99.51 E-value=4.3e-12 Score=127.62 Aligned_cols=215 Identities=14% Similarity=0.174 Sum_probs=132.9
Q ss_pred CccEEEEeCC--CCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEe
Q 044773 11 KVKGVLVTNP--SNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVY 88 (289)
Q Consensus 11 ~~~~i~l~~p--~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~ 88 (289)
++.+ ++..| ++-.....+.+.+++|.++|++||+++|+||++.+++..|..+... +.. +...-|.
T Consensus 744 ~iAa-vI~Epv~g~gG~i~~p~~yL~~l~~lc~~~g~llI~DEV~tGfGRtG~~~~a~-e~~-----------gv~PDiv 810 (972)
T PRK06149 744 GLAG-FICEPVYGNAGGIALPPGYLQQVYAAVRARGGVCIADEVQVGYGRLGHYFWGF-EQQ-----------GVVPDII 810 (972)
T ss_pred ceEE-EEEcccccCCCcccCCHHHHHHHHHHHHHcCCEEEEEeehhcCCccCccchhh-hhc-----------CCCCCEE
Confidence 4445 55556 4444466788899999999999999999999999887766543322 111 2222345
Q ss_pred cCccccCCCCceEEEEEecCHHHHHHHHh---ccccCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044773 89 SLSKDLGLPGFRVGAIYSNDDTVVAAATK---MSSFGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLE 165 (289)
Q Consensus 89 s~sK~~g~~G~r~G~i~~~~~~~~~~~~~---~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 165 (289)
+++|.+| .|+++|+++++ +.+.+.+.. ..+....|++...++.+.|+-..- +...+..++..++|.+.|+
T Consensus 811 t~gK~lg-~G~Pl~av~~~-~~i~~~~~~~~~~~sT~~gnP~~~aaala~L~~i~~-----e~l~~~~~~~G~~l~~~L~ 883 (972)
T PRK06149 811 TMAKGMG-NGHPLGAVITR-REIAEALEAEGYFFSSTGGSPVSCRIGMAVLDVLRE-----EKLQENARRVGDHLKARLE 883 (972)
T ss_pred Eeccccc-CCeeeEEEEEc-HHHHhhhccCCcccCCCCCCHHHHHHHHHHHHHHHh-----cCHHHHHHHHHHHHHHHHH
Confidence 8999998 88999999995 455555432 112223677777777666653221 1223334444444444444
Q ss_pred hc----CCceecCCceEEEEEecCccc-c-CCChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEEec-CCHHHHH
Q 044773 166 KA----GISCLKSNAGLFCWVDMRHLL-S-SNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFAN-MSEDTLK 238 (289)
Q Consensus 166 ~~----g~~~~~~~~g~~~~i~~~~~~-~-~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ris~~~-~~~e~l~ 238 (289)
++ ++......-|+++.+++.... . .........+...++ +.||.+.|.... .+.+||.+.. +++++++
T Consensus 884 ~l~~~~~~i~~vrG~Gl~~gvel~~~~~~~~~~~~~~~~i~~~l~-~~Gvl~~~~g~~----~~vl~~~Ppl~it~~~id 958 (972)
T PRK06149 884 ALADRHPLIGAVHGMGLYLGVELVRDRQTLEPATEETAAICDRLL-ELGVIMQPTGDH----LNILKIKPPLCLDRESAD 958 (972)
T ss_pred HHHHhCCCeEEEeecceEEEEEEecCcccCCCChHHHHHHHHHHH-hCCeEEeecCCC----CCEEEEECCCcCCHHHHH
Confidence 33 332222223566667764211 1 111122345666766 569999875221 3579998853 7999999
Q ss_pred HHHHHHHHHHHH
Q 044773 239 LSMQRLKAFVDS 250 (289)
Q Consensus 239 ~~l~~l~~~l~~ 250 (289)
.+++++.+++.+
T Consensus 959 ~~~~~l~~~l~~ 970 (972)
T PRK06149 959 FFVDMLDRVLTE 970 (972)
T ss_pred HHHHHHHHHHHh
Confidence 999999998864
No 272
>PRK06943 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional
Probab=99.50 E-value=5.3e-12 Score=117.01 Aligned_cols=219 Identities=17% Similarity=0.120 Sum_probs=134.9
Q ss_pred HHHhhhC-CCccEEEEeC-CCCCCcc-CCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCC
Q 044773 3 QLAQKRH-LKVKGVLVTN-PSNPLGT-TMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTE 79 (289)
Q Consensus 3 ~~~~~~~-~~~~~i~l~~-p~NPtG~-~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d 79 (289)
++++..+ .++-+|++.. .+.-.|. ..+.+.+++|.++|++||+++|.||++.+++.+|..+.. +.
T Consensus 212 ~~~l~~~~~~iAAviiEPvvqg~gG~~~~~~~yl~~lr~lc~~~gillI~DEV~TG~GRtG~~fa~--~~---------- 279 (453)
T PRK06943 212 RRLFAERAGKIAALIVEPLVQCAAGMAMHDPSYLRGLRALCDRYGVHLIADEIAVGCGRTGTFFAC--EQ---------- 279 (453)
T ss_pred HHHHHhCCCceEEEEEeccccccCCcccCCHHHHHHHHHHHHHcCCEEEeechhhCCCCCcchhHH--Hh----------
Confidence 4455433 3555655554 2555566 468889999999999999999999999998766654321 11
Q ss_pred CCCceEEEecCccccCCCC-ceEEEEEecCHHHHHHHHh--------ccccCCCChHHHHHHHHHhCCchHHHHHHHHHH
Q 044773 80 VWNRVHIVYSLSKDLGLPG-FRVGAIYSNDDTVVAAATK--------MSSFGLVSSQTQYLLSALLSDKKFAQNYISENK 150 (289)
Q Consensus 80 ~~~~~i~i~s~sK~~g~~G-~r~G~i~~~~~~~~~~~~~--------~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~ 150 (289)
.+...-+.+++|.++ .| +++|.+++++ .+.+.+.. ..+.+..|++...++.+.|+-..- + ...
T Consensus 280 -~gv~PDivt~gKgl~-gG~~Pi~av~~~~-ei~~~~~~~~~~~~~~~~~T~~gnpl~~aaa~a~L~~i~~-~----~l~ 351 (453)
T PRK06943 280 -AGVWPDFLCLSKGIS-GGYLPLSLVLSRD-AIFAAFYDDDVTRGFLHSHSYTGNPLACRAALATLDLFAE-D----DVL 351 (453)
T ss_pred -CCCCCCeEeeehhhc-cCcccceEEEEcH-HHHHhhcccCccCCccCCCCCCCCHHHHHHHHHHHHHHHh-c----CHH
Confidence 122233666799998 88 6999999965 44444431 122333678887777776654321 1 122
Q ss_pred HHHHHHHHHHHHHHHhc----CCceecCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEE
Q 044773 151 KRLKQRHRKLVSGLEKA----GISCLKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFR 226 (289)
Q Consensus 151 ~~~~~~~~~l~~~l~~~----g~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~R 226 (289)
++.++..+++.+.|+++ ++.-.... |+++.+++...... ......++...++ ++||.+.+.. ..+|
T Consensus 352 ~~~~~~G~~l~~~L~~l~~~~~v~~vrG~-Gl~~gvel~~~~~~-~~~~~~~i~~~~~-~~Gll~~~~g-------~~l~ 421 (453)
T PRK06943 352 ARNARKSARLRAALAPLAAHPQVRHLRQR-GTIFAFDVALDGDA-ARTFSRRFFEAAL-ERELLLRPIG-------TTVY 421 (453)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCEEeEecc-ccEEEEEEccCCCc-chHHHHHHHHHHH-HCCcEEEecC-------CEEE
Confidence 33444444455555443 22212223 45666666522111 0011234666665 6799987631 3589
Q ss_pred EEEec-CCHHHHHHHHHHHHHHHHHH
Q 044773 227 VCFAN-MSEDTLKLSMQRLKAFVDSI 251 (289)
Q Consensus 227 is~~~-~~~e~l~~~l~~l~~~l~~~ 251 (289)
|+++. +++++++++++++.+++.+.
T Consensus 422 ~~Ppl~it~~eid~~~~~l~~al~~~ 447 (453)
T PRK06943 422 LMPPYVLDDDEIAWLAERTRATLDAT 447 (453)
T ss_pred EeCCCcCCHHHHHHHHHHHHHHHHHH
Confidence 99753 79999999999999999875
No 273
>PRK06148 hypothetical protein; Provisional
Probab=99.49 E-value=9.1e-12 Score=125.46 Aligned_cols=216 Identities=11% Similarity=0.041 Sum_probs=134.6
Q ss_pred CccEEEEeCC-C-CCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEe
Q 044773 11 KVKGVLVTNP-S-NPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVY 88 (289)
Q Consensus 11 ~~~~i~l~~p-~-NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~ 88 (289)
++-+ ++..| . +-.....+++.++++.++|+++|+++|.||++.+++..|....... ..+.+.-+.
T Consensus 784 ~iAA-vI~EPv~g~gG~i~pp~~yl~~lr~lc~~~g~llI~DEVqtGfGRtG~~~~a~e------------~~gv~PDiv 850 (1013)
T PRK06148 784 GPAF-FIAESIPSVAGQIFLPEGYLREVYAMVRAAGGVCIADEVQVGFGRVGSHWWAFE------------TQGVVPDIV 850 (1013)
T ss_pred ceEE-EEEcCCcCCCCCcCCCHHHHHHHHHHHHHhCCEEEEEecccCCCCCCCcchhhh------------hcCCCccee
Confidence 4555 55556 4 4333456888999999999999999999999999876665322211 113334467
Q ss_pred cCccccCCCCceEEEEEecCHHHHHHHHh---ccccCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044773 89 SLSKDLGLPGFRVGAIYSNDDTVVAAATK---MSSFGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLE 165 (289)
Q Consensus 89 s~sK~~g~~G~r~G~i~~~~~~~~~~~~~---~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 165 (289)
+++|.+| .|+++|.++++ +.+.+.+.. ..+.+..|+++..+..+.|+-..- +...++.++..++|.+.|+
T Consensus 851 t~gK~lg-gG~Plgav~~~-~ei~~~~~~g~~~~~Tf~gnpla~aaa~a~L~~i~~-----e~l~~~~~~~G~~l~~~L~ 923 (1013)
T PRK06148 851 TMGKPIG-NGHPMGAVVTT-REIADSFDNGMEYFNTFGGNPVSCAIGLAVLDIIED-----EDLQRNALEIGNYLLAGLR 923 (1013)
T ss_pred eeccccc-CCcceEEEEEc-HHHHhhccCCCccccCCCCCHHHHHHHHHHHHHHhh-----ccHHHHHHHHHHHHHHHHH
Confidence 8899998 89999999995 555554432 122333778887777666653211 1223334444444444444
Q ss_pred hc----CCceecCCceEEEEEecCcccc-C-CChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEEec-CCHHHHH
Q 044773 166 KA----GISCLKSNAGLFCWVDMRHLLS-S-NTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFAN-MSEDTLK 238 (289)
Q Consensus 166 ~~----g~~~~~~~~g~~~~i~~~~~~~-~-~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ris~~~-~~~e~l~ 238 (289)
++ ++......-|.++.+.+..... . ........+...++ ++||.+.+...+ ...+||.++. +++++++
T Consensus 924 ~l~~~~~~i~~VrG~Gl~~gvel~~~~~~~~~~~~~~~~i~~~~~-~~Gvl~~~~g~~----~~vlr~~Ppl~it~~~id 998 (1013)
T PRK06148 924 ELQDRFDIIGDVRGMGLFLGIELVTDRKTKAPATAIARYVKNGAR-ERGILIGTEGPH----DNVLKIRPPLIFSRADAD 998 (1013)
T ss_pred HHHHhCCCceEEeeeceEEEEEecCCccccCccHHHHHHHHHHHH-hCCeEEeccCCC----CCEEEEeCCccCCHHHHH
Confidence 43 3222222335666677653211 1 11111234666665 679999875322 3579999954 7999999
Q ss_pred HHHHHHHHHHHHH
Q 044773 239 LSMQRLKAFVDSI 251 (289)
Q Consensus 239 ~~l~~l~~~l~~~ 251 (289)
++++++.+++.+.
T Consensus 999 ~~l~~l~~~l~~~ 1011 (1013)
T PRK06148 999 HLLEVLDDVLAAA 1011 (1013)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999998753
No 274
>PRK12403 putative aminotransferase; Provisional
Probab=99.49 E-value=1.3e-11 Score=114.71 Aligned_cols=213 Identities=15% Similarity=0.104 Sum_probs=128.2
Q ss_pred CccEEEEeCC-CCCCccC-CCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccC-hhhhhhccccccCCCCCceEEE
Q 044773 11 KVKGVLVTNP-SNPLGTT-MSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVS-IMEILKDRNCENTEVWNRVHIV 87 (289)
Q Consensus 11 ~~~~i~l~~p-~NPtG~~-~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~-~~~~~~~~~~~~~d~~~~~i~i 87 (289)
++.+ ++..| ..-.|.. .+++.+++|.++|++||+++|+||++.+++.+|..+.. ...+. .-+
T Consensus 222 ~iaa-vI~Epv~g~gG~~~~~~~yl~~lr~lc~~~g~lLI~DEV~tGfGRtG~~~a~e~~gv~--------------PDi 286 (460)
T PRK12403 222 NVAG-FVAEPFQGAGGMIFPPESYWPEIQRICRQYDVLLCADEVIGGFGRTGEWFAHEHFGFE--------------PDT 286 (460)
T ss_pred ceEE-EEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCchhhhhhhcCCC--------------CCe
Confidence 3445 55556 5556765 57889999999999999999999999988666654321 11121 123
Q ss_pred ecCccccCCCC-ceEEEEEecCHHHHHHHHh------ccccCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHH-HHHHH
Q 044773 88 YSLSKDLGLPG-FRVGAIYSNDDTVVAAATK------MSSFGLVSSQTQYLLSALLSDKKFAQNYISENKKRLK-QRHRK 159 (289)
Q Consensus 88 ~s~sK~~g~~G-~r~G~i~~~~~~~~~~~~~------~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~ 159 (289)
.+++|.+| .| +++|.++++ +.+.+.+.. ..+.+..|++...++.+.|+..+- + ...++++ ++.++
T Consensus 287 v~~gK~lg-gG~~Piga~v~~-~~i~~~~~~~~~~~~~~~T~~gnPl~~Aaala~L~~i~~-~----~l~~~~~~~~g~~ 359 (460)
T PRK12403 287 LSIAKGLT-SGYVPMGGLVLS-KRIAEALVEQGGVFAHGLTYSGHPVAAAVAIANLKALRD-E----GVVTRVKDDTGPY 359 (460)
T ss_pred EEEccccc-ccccceEEEEEC-HHHHHHHhcCCCccccCCCCCCCHHHHHHHHHHHHHHHh-c----cHHHHHHHHHHHH
Confidence 35899998 78 499999985 455555431 112233677777777766653221 1 1233332 44444
Q ss_pred HHHHHHh----cCCceecCCceEEEEEecCcccc-CCChh----hHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEEe
Q 044773 160 LVSGLEK----AGISCLKSNAGLFCWVDMRHLLS-SNTFE----AEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFA 230 (289)
Q Consensus 160 l~~~l~~----~g~~~~~~~~g~~~~i~~~~~~~-~~~~~----~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ris~~ 230 (289)
+.+.|++ +++......-|.++.+.+..... ..... ....+...++ +.||.+.+.. +.+|++++
T Consensus 360 l~~~L~~l~~~~~~i~~vrG~Gl~~gie~~~~~~~~~~~~~~~~~~~~~~~~~~-~~Gll~~~~~-------~~~~l~Pp 431 (460)
T PRK12403 360 LQRCLREVFGDHPLVGEVQGAGLVAALQFAEDKATRKRFANENDLAWRCRTIGF-EEGVIIRSTL-------GRMIMAPA 431 (460)
T ss_pred HHHHHHHHHhcCCCEEeEeecceEEEEEEccCccccccccchhHHHHHHHHHHH-hCCEEEEecC-------CEEEEECC
Confidence 4444443 33322222335566676643211 11000 0122334444 6799997531 35899986
Q ss_pred c-CCHHHHHHHHHHHHHHHHHHHH
Q 044773 231 N-MSEDTLKLSMQRLKAFVDSITT 253 (289)
Q Consensus 231 ~-~~~e~l~~~l~~l~~~l~~~~~ 253 (289)
. .++++++++++.+.+++++...
T Consensus 432 l~it~~eid~~~~~l~~al~~~~~ 455 (460)
T PRK12403 432 LVAGRAEIDELVDKTRIAVDRTAR 455 (460)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHH
Confidence 4 6999999999999999987643
No 275
>PRK07483 hypothetical protein; Provisional
Probab=99.49 E-value=8.3e-12 Score=115.46 Aligned_cols=220 Identities=15% Similarity=0.130 Sum_probs=131.2
Q ss_pred CccEEEEeCC-CC-CCc-cCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEE
Q 044773 11 KVKGVLVTNP-SN-PLG-TTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIV 87 (289)
Q Consensus 11 ~~~~i~l~~p-~N-PtG-~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i 87 (289)
++-+|++ .| +. -.| ...+++.++.|.++|++||+++|.||++.+++.+|..+.. +. .+...-+
T Consensus 199 ~iAAviv-EPiqg~~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfGRtG~~~a~--~~-----------~gv~PDi 264 (443)
T PRK07483 199 TVAAFVA-ETVVGATAGAVPPVPGYFKRIREVCDRYGVLLILDEVMCGMGRTGTLFAC--EE-----------DGVAPDL 264 (443)
T ss_pred ceEEEEE-eCcccCcCCeEeCCHHHHHHHHHHHHHhCCEEEEecceeCcccCcHHHHH--hh-----------cCCCCCe
Confidence 4555444 56 42 234 4567889999999999999999999999988666543221 11 1222336
Q ss_pred ecCccccCCCCc-eEEEEEecCHHHHHHHHhc------cccCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHH
Q 044773 88 YSLSKDLGLPGF-RVGAIYSNDDTVVAAATKM------SSFGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKL 160 (289)
Q Consensus 88 ~s~sK~~g~~G~-r~G~i~~~~~~~~~~~~~~------~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l 160 (289)
.+++|.++ .|+ ++|.+++++ .+.+.+... .+.+..|++...++.+.|+...- ....++.++..++|
T Consensus 265 v~~gK~l~-gG~~Pi~av~~~~-~i~~~~~~~~~~~~h~~T~~gnpl~~aaa~a~l~~i~~-----~~l~~~~~~~g~~l 337 (443)
T PRK07483 265 VTIAKGLG-AGYQPIGAVLASD-RIYDAIADGSGFFQHGHTYLGHATACAAALAVQRVIAE-----DGLLANVRARGEQL 337 (443)
T ss_pred eeehhhhc-cCccccEEEEEcH-HHHHHHhcCCCccccCCCCCCCHHHHHHHHHHHHHHHh-----cCHHHHHHHHHHHH
Confidence 67899998 885 999999965 444444321 12333788887777776653221 12233344444444
Q ss_pred HHHHHh----cCCceecCCceEEEEEecCccccC-CCh----hhHHHHHHHHHHhcCeEEeCCCCCC-CCCCCeEEEEEe
Q 044773 161 VSGLEK----AGISCLKSNAGLFCWVDMRHLLSS-NTF----EAEMELWKKIVYDVKLNISPGSSCH-CTEPGWFRVCFA 230 (289)
Q Consensus 161 ~~~l~~----~g~~~~~~~~g~~~~i~~~~~~~~-~~~----~~~~~~~~~ll~~~gi~v~pg~~f~-~~~~~~~Ris~~ 230 (289)
.+.|++ ++.......-|.+..+++...... ... .....+...++ ++||.+.+..... ......+||.+.
T Consensus 338 ~~~L~~l~~~~~~i~~vRG~Glm~gie~~~~~~~~~~~~~~~~~~~~~~~~~~-~~Gll~~~~~~~~~~~~~~~l~~~Pp 416 (443)
T PRK07483 338 RARLRERLGQHPHVGDIRGRGLFVGVELVADRATKAPFDPALKLHARIKREAM-ARGLMVYPMGGTIDGVRGDHVLLAPP 416 (443)
T ss_pred HHHHHHHHhcCCCeeeEeecccEEEEEEeecccccCCCCchhhHHHHHHHHHH-HCCcEEEecCccccCCCCCEEEEECC
Confidence 444443 232111222245555666432110 000 11234666666 6799998642110 011357999996
Q ss_pred c-CCHHHHHHHHHHHHHHHHHHH
Q 044773 231 N-MSEDTLKLSMQRLKAFVDSIT 252 (289)
Q Consensus 231 ~-~~~e~l~~~l~~l~~~l~~~~ 252 (289)
. .+++++++++++|.+++.+..
T Consensus 417 L~it~~eid~~~~~l~~~l~~~~ 439 (443)
T PRK07483 417 FIITAAQIDEIVERLGDAIDAAL 439 (443)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHH
Confidence 4 799999999999999987643
No 276
>PRK07480 putative aminotransferase; Validated
Probab=99.48 E-value=5.1e-12 Score=117.25 Aligned_cols=216 Identities=13% Similarity=0.065 Sum_probs=130.0
Q ss_pred CccEEEEeCCCCCCccC-CCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEec
Q 044773 11 KVKGVLVTNPSNPLGTT-MSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVYS 89 (289)
Q Consensus 11 ~~~~i~l~~p~NPtG~~-~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~s 89 (289)
++.+|++...+.-.|.. .+.+.+++|.++|++||+++|+||++.+++.+|..+.. +.. +...-+.+
T Consensus 219 ~vAAvi~EPiqg~gG~~~~~~~yl~~lr~lc~~~g~llI~DEV~tGfGRtG~~~a~--~~~-----------gv~PDiv~ 285 (456)
T PRK07480 219 NVAAFIGEPIQGAGGVIIPPATYWPEIQRICRKYDILLVADEVICGFGRTGEWFGS--QHF-----------GIKPDLMT 285 (456)
T ss_pred cEEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCcCcchhhh--hhc-----------CCCCCeee
Confidence 45565554335555664 57778999999999999999999999988666653221 111 22233667
Q ss_pred CccccCCCC-ceEEEEEecCHHHHHHHH--h----ccccCCCChHHHHHHHHHhCCchHHHHHHHHHHHHH-HHHHHHHH
Q 044773 90 LSKDLGLPG-FRVGAIYSNDDTVVAAAT--K----MSSFGLVSSQTQYLLSALLSDKKFAQNYISENKKRL-KQRHRKLV 161 (289)
Q Consensus 90 ~sK~~g~~G-~r~G~i~~~~~~~~~~~~--~----~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~l~ 161 (289)
|+|.+| .| +++|.+++++ .+.+.+. . ..+.+..|++...++.+.|+...- ....++. ++..++|.
T Consensus 286 ~gK~l~-gG~~Pi~av~~~~-~i~~~~~~~~~~~~~~~T~~gnpl~~Aaa~a~L~~l~~-----~~l~~~~~~~~g~~l~ 358 (456)
T PRK07480 286 IAKGLT-SGYIPMGAVGVGD-RVAEVLIEEGGEFNHGFTYSGHPVAAAVALANLRILRD-----EGIVERVRDDTGPYLQ 358 (456)
T ss_pred eehhhc-cCCccceEEEEcH-HHHHHHhcCCCCcccCCCCCcCHHHHHHHHHHHHHHHh-----CCHHHHHHHHHHHHHH
Confidence 899998 78 4999999954 4455442 1 112334788888877777763221 1122233 23334444
Q ss_pred HHHHh---cCCceecCCceEEEEEecCcccc-CCChhh----HHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEEec-C
Q 044773 162 SGLEK---AGISCLKSNAGLFCWVDMRHLLS-SNTFEA----EMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFAN-M 232 (289)
Q Consensus 162 ~~l~~---~g~~~~~~~~g~~~~i~~~~~~~-~~~~~~----~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ris~~~-~ 232 (289)
+.|++ +++......-|.+..+.+.+... ...+.+ ...+...++ ++||.+.+. + ..+||+++. +
T Consensus 359 ~~l~~l~~~~~i~~vrG~Glm~gie~~~~~~~~~~~~~~~~~~~~~~~~~~-~~Gll~~~~---~----~~l~~~Ppl~i 430 (456)
T PRK07480 359 KRLRELADHPLVGEVRGVGLVGAIELVKDKATRERFEAGGGVGTICRDHCF-ANGLIMRAV---G----DRMIISPPLVI 430 (456)
T ss_pred HHHHHhhcCCCeeeEEeecceEEEEEeccccccccCcchhhHHHHHHHHHH-HCCcEEeec---C----CEEEEECCCCC
Confidence 44433 33211222224565666643211 111101 123444555 679998752 1 468999964 6
Q ss_pred CHHHHHHHHHHHHHHHHHHHHh
Q 044773 233 SEDTLKLSMQRLKAFVDSITTT 254 (289)
Q Consensus 233 ~~e~l~~~l~~l~~~l~~~~~~ 254 (289)
++++++++++++.+++.+..++
T Consensus 431 t~~eid~~~~~l~~al~~~~~~ 452 (456)
T PRK07480 431 THAEIDELVEKARKALDATAAE 452 (456)
T ss_pred CHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999887553
No 277
>PLN02482 glutamate-1-semialdehyde 2,1-aminomutase
Probab=99.48 E-value=8e-12 Score=116.11 Aligned_cols=219 Identities=14% Similarity=0.176 Sum_probs=127.3
Q ss_pred hHHHhhhCCCccEEEEeCC-CCCCccCC-CHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCC
Q 044773 2 YQLAQKRHLKVKGVLVTNP-SNPLGTTM-SRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTE 79 (289)
Q Consensus 2 l~~~~~~~~~~~~i~l~~p-~NPtG~~~-~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d 79 (289)
+++++..+++.-+.++..| ..-.|.+. +++.+++|.++|++||+++|+||++.++ ..+.. ...+..
T Consensus 236 l~~~l~~~~~~iAavI~Epv~g~~G~i~p~~~fl~~lr~lc~~~g~lLI~DEV~tGf-R~g~~--ga~~~~--------- 303 (474)
T PLN02482 236 VKKLFEANKGEIAAVILEPVVGNSGFIVPKKEFLEGLREITKENGALLVFDEVMTGF-RIAYG--GAQEYF--------- 303 (474)
T ss_pred HHHHHHhCCCceEEEEECCCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCe-ecCcc--hHhHHh---------
Confidence 4556655543334455666 55567655 4789999999999999999999999876 44432 112221
Q ss_pred CCCceEEEecCccccCCCCceEEEEEecCHHHHHHHHhc-----cccCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHH
Q 044773 80 VWNRVHIVYSLSKDLGLPGFRVGAIYSNDDTVVAAATKM-----SSFGLVSSQTQYLLSALLSDKKFAQNYISENKKRLK 154 (289)
Q Consensus 80 ~~~~~i~i~s~sK~~g~~G~r~G~i~~~~~~~~~~~~~~-----~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~ 154 (289)
+....+.+|+|.+| .|+++|.++++ +.+.+.+... .+.+..|++...+..+.|+... + ....++++
T Consensus 304 --gv~PDi~t~gK~lg-gG~Pigav~g~-~ei~~~~~~~~~~~~~~T~~gnpl~~aAala~L~~l~---~--~~~~~~~~ 374 (474)
T PLN02482 304 --GITPDLTTLGKVIG-GGLPVGAYGGR-REIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLQ---Q--PGTYEYLD 374 (474)
T ss_pred --CCCCCEEEecchhh-CCCceEEEEEc-HHHHHhhccCCCcccccCcchhHHHHHHHHHHHHHHh---c--cCHHHHHH
Confidence 11223568999998 89999999884 5555554321 1122256666665555544321 1 12344555
Q ss_pred HHHHHHHHHHHhc----CCcee-cCCceEEEEEecCc-ccc------CCChhhHHHHHHHHHHhcCeEEeCCCCCCCCCC
Q 044773 155 QRHRKLVSGLEKA----GISCL-KSNAGLFCWVDMRH-LLS------SNTFEAEMELWKKIVYDVKLNISPGSSCHCTEP 222 (289)
Q Consensus 155 ~~~~~l~~~l~~~----g~~~~-~~~~g~~~~i~~~~-~~~------~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~ 222 (289)
++.++|.+.|+++ |+.+. ..-+|++. +.+.. +.. .........+...++ ++||.+.|... . .
T Consensus 375 ~~g~~l~~~L~~l~~~~g~~~~~~~v~g~~g-i~f~~~~~~~~~~~~~~d~~~~~~~~~~l~-~~Gv~~~~~~~-~---~ 448 (474)
T PLN02482 375 KITKKLIQGILEAGKKAGHEMCGGYISGMFG-FFFTEGPVYNFADAKKSDTAKFARFHRGML-EEGVYLAPSQF-E---A 448 (474)
T ss_pred HHHHHHHHHHHHHHHhcCCCEEEcccceEEE-EEEecCCccChhhhccCCHHHHHHHHHHHH-HCCeEEeccCC-C---C
Confidence 5555555555543 44443 23344432 22221 100 001111234666666 56999987422 1 1
Q ss_pred CeEEEEEecCCHHHHHHHHHHHHHHHHH
Q 044773 223 GWFRVCFANMSEDTLKLSMQRLKAFVDS 250 (289)
Q Consensus 223 ~~~Ris~~~~~~e~l~~~l~~l~~~l~~ 250 (289)
++ +++. +++++++++++++.+++.+
T Consensus 449 ~~--psl~-ht~~dId~~l~al~~~l~~ 473 (474)
T PLN02482 449 GF--TSLA-HTEEDIDFTIAAAERVLAR 473 (474)
T ss_pred Cc--CCCC-CCHHHHHHHHHHHHHHHHh
Confidence 11 3444 6999999999999998864
No 278
>PRK07036 hypothetical protein; Provisional
Probab=99.48 E-value=1e-11 Score=115.58 Aligned_cols=218 Identities=11% Similarity=0.036 Sum_probs=132.7
Q ss_pred CccEEEEeCCCCCCccC-CCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEec
Q 044773 11 KVKGVLVTNPSNPLGTT-MSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVYS 89 (289)
Q Consensus 11 ~~~~i~l~~p~NPtG~~-~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~s 89 (289)
++-+|++...+.-.|.. .+++.+++|.++|++||+++|+||++.+++.+|..+.. .... +...-+.+
T Consensus 220 ~iAavi~EPv~g~gG~~~p~~~yl~~lr~lc~~~g~llI~DEV~tGfGRtG~~~~~-~~~~-----------gv~PDivt 287 (466)
T PRK07036 220 NIAAFIAEPILGSGGVIVPPPGYHARMREICRRYDILYISDEVVTGFGRLGHFFAS-EAVF-----------GIQPDIIT 287 (466)
T ss_pred ceEEEEEeCCcCCCCCccCCHHHHHHHHHHHHHcCCEEEEeechhCCCcCchhhhh-hhhc-----------CCCCCEEE
Confidence 45554544335555664 57889999999999999999999999988666643211 1111 11222567
Q ss_pred CccccCCCC-ceEEEEEecCHHHHHHHHh-------c--cccCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHH
Q 044773 90 LSKDLGLPG-FRVGAIYSNDDTVVAAATK-------M--SSFGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRK 159 (289)
Q Consensus 90 ~sK~~g~~G-~r~G~i~~~~~~~~~~~~~-------~--~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 159 (289)
++|.+| .| +++|.+++++ .+.+.+.. + .+.+..|++...++.+.|+... + ....++.++..++
T Consensus 288 ~gK~l~-gG~~Pi~av~~~~-~i~~~~~~~~~~~~~~~~~~T~~gnpl~~aaa~a~Le~i~---~--~~l~~~~~~~g~~ 360 (466)
T PRK07036 288 FAKGLT-SGYQPLGAVIISE-RLLDVISGPNAKGNVFTHGFTYSGHPVACAAALKNIEIME---R--EGLCEHVREVGPY 360 (466)
T ss_pred Eccccc-cCccccEEEEEcH-HHHHHHhcccCcCcccccCCCCCCCHHHHHHHHHHHHHHH---h--CCHHHHHHHHHHH
Confidence 899998 88 5999999954 44444431 1 1133367887777766665321 1 1233344444444
Q ss_pred HHHHHHhc---CCceecCCceEEEEEecCccccC-CC----hhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEEec
Q 044773 160 LVSGLEKA---GISCLKSNAGLFCWVDMRHLLSS-NT----FEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFAN 231 (289)
Q Consensus 160 l~~~l~~~---g~~~~~~~~g~~~~i~~~~~~~~-~~----~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ris~~~ 231 (289)
|.+.|+++ ++......-|.++.+.+...... .. ..-...+...++ +.||.+.|.. +.+|++++.
T Consensus 361 l~~~L~~l~~~~~v~~vrG~Gl~~~ve~~~~~~~~~~~~~~~~~~~~~~~~~~-~~Gvl~~~~~-------~~~~l~Ppl 432 (466)
T PRK07036 361 FEERLASLRELPLVGDVRGDHLMACVECVADKGSKALLPEDIAIGQRIDRHCQ-ERGLLVRPLE-------HLCVLSPPL 432 (466)
T ss_pred HHHHHHHhccCCCEEEEEeeceEEEEEEccCccccCCCCchhHHHHHHHHHHH-HCCcEEeecC-------CEEEEeCCC
Confidence 55555432 32222223355666776432111 00 011234555555 6799997631 368898864
Q ss_pred -CCHHHHHHHHHHHHHHHHHHHHhh
Q 044773 232 -MSEDTLKLSMQRLKAFVDSITTTL 255 (289)
Q Consensus 232 -~~~e~l~~~l~~l~~~l~~~~~~~ 255 (289)
+++++++++++++.+++++..+.+
T Consensus 433 ~it~~~id~~~~~l~~al~~~~~~~ 457 (466)
T PRK07036 433 IITRAQIDEIVAILRAAIEETADEL 457 (466)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 699999999999999998876544
No 279
>PF01053 Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent enzyme; InterPro: IPR000277 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent enzymes involved in the metabolism of cysteine, homocysteine and methionine have been shown [, ] to be evolutionary related. These enzymes are proteins of about 400 amino-acid residues. The pyridoxal-P group is attached to a lysine residue located in the central section of these enzymes.; GO: 0030170 pyridoxal phosphate binding, 0006520 cellular amino acid metabolic process; PDB: 1PFF_A 2NMP_A 3ELP_B 3COG_C 1CS1_A 1E5E_B 3RI6_A 1E5F_A 2FQ6_B 1CL2_B ....
Probab=99.48 E-value=5.8e-12 Score=113.94 Aligned_cols=205 Identities=17% Similarity=0.177 Sum_probs=122.2
Q ss_pred hHHHhhhCCCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcC-CEEEEecCCCCCccCCCCccChhhhhhccccccCCC
Q 044773 2 YQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKN-IHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEV 80 (289)
Q Consensus 2 l~~~~~~~~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~-~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 80 (289)
+++++. +++++|++.+|+||+..+.+ +++|+++|+++| +++++|+.+....+ ....+
T Consensus 133 l~~~l~--~~t~~v~~EspsNP~l~v~D---l~~i~~~a~~~g~~~~vVDnT~atp~~-----~~pL~------------ 190 (386)
T PF01053_consen 133 LEAALR--PNTKLVFLESPSNPTLEVPD---LEAIAKLAKEHGDILVVVDNTFATPYN-----QNPLE------------ 190 (386)
T ss_dssp HHHHHC--TTEEEEEEESSBTTTTB------HHHHHHHHHHTTT-EEEEECTTTHTTT-----C-GGG------------
T ss_pred HHhhcc--ccceEEEEEcCCCccccccc---HHHHHHHHHHhCCceEEeeccccceee-----eccCc------------
Confidence 344555 47999999999999988877 999999999998 99999999975311 11111
Q ss_pred CCceEEEecCccccC-CCCceEEEEEecC-HHHHHHHHhccccC--CCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHH
Q 044773 81 WNRVHIVYSLSKDLG-LPGFRVGAIYSND-DTVVAAATKMSSFG--LVSSQTQYLLSALLSDKKFAQNYISENKKRLKQR 156 (289)
Q Consensus 81 ~~~~i~i~s~sK~~g-~~G~r~G~i~~~~-~~~~~~~~~~~~~~--~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~ 156 (289)
.+-++++.|++|+++ .+..=.|.+++++ +.+.+.++...... ..++.....+.+-++. +..+.++..++
T Consensus 191 ~GaDivv~S~TKyl~Ghsdv~~G~vv~~~~~~~~~~l~~~~~~~G~~~~p~da~ll~rgl~T-------l~~R~~~~~~n 263 (386)
T PF01053_consen 191 LGADIVVHSATKYLSGHSDVMGGAVVVNGSSELYDRLREFRRLLGATLSPFDAWLLLRGLRT-------LPLRMERQNEN 263 (386)
T ss_dssp GT-SEEEEETTTTTTTSSSE-EEEEEESSHHHHHHHHHHHHHHHT-B--HHHHHHHHHHHTT-------HHHHHHHHHHH
T ss_pred CCceEEEeeccccccCCcceeeEEEEECchhhhhhhhcchhhhcCccchHHHHHHHhcCCCc-------HHHHHHHHHHH
Confidence 245689999999995 4446678888866 45655554433222 1344444444444444 45556667778
Q ss_pred HHHHHHHHHhcC-Cc-eecC-----------------CceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCC
Q 044773 157 HRKLVSGLEKAG-IS-CLKS-----------------NAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSC 217 (289)
Q Consensus 157 ~~~l~~~l~~~g-~~-~~~~-----------------~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f 217 (289)
.+.+.+.|+++. ++ +..| -+| .+.+++.... +.+..+.+.-.++.. |..+
T Consensus 264 A~~lA~~L~~hp~V~~V~yPgl~s~p~~~~~~~~~~g~gg-l~sf~l~~~~---------~~~~~f~~~l~l~~~-~~Sl 332 (386)
T PF01053_consen 264 AEALAEFLEEHPKVKRVYYPGLPSHPQHELAKRQMSGGGG-LLSFELKGGE---------EAARRFLDALKLFSI-APSL 332 (386)
T ss_dssp HHHHHHHHHTSTTEEEEEETTSTTSTTHHHHHHHCSSCTS-EEEEEESSHH---------HHHHHHHHH-SSSEE-SSS-
T ss_pred HHHHHHHHHhCCCCCeEEEcccccccceeeeeecccccCc-eeEEEeccch---------hhhHhHHhhhhhHhh-hhhc
Confidence 888999998872 22 2222 234 5557777542 123333334344322 2222
Q ss_pred CC-------------------------CCCCeEEEEEecCCHHHHHHHHHHHHHHHH
Q 044773 218 HC-------------------------TEPGWFRVCFANMSEDTLKLSMQRLKAFVD 249 (289)
Q Consensus 218 ~~-------------------------~~~~~~Ris~~~~~~e~l~~~l~~l~~~l~ 249 (289)
|. ..++.+|||++. |+.+++++.|.++++
T Consensus 333 Gg~~SLi~~p~~~~h~~~~~e~~~~~Gi~~~liRlSvGl---Ed~~dLi~Dl~~AL~ 386 (386)
T PF01053_consen 333 GGVESLISHPASTSHRSLSPEERAEAGISDGLIRLSVGL---EDPDDLIADLEQALE 386 (386)
T ss_dssp SSSS-EEEETTCTTTTTSCHHHHHHTTS-TTEEEEE--S---S-HHHHHHHHHHHHH
T ss_pred CCcccccccccchhhccCChhhhhccCCCCCeeEEEecc---CCHHHHHHHHHHhcC
Confidence 21 124789999997 778888888888775
No 280
>PRK05967 cystathionine beta-lyase; Provisional
Probab=99.48 E-value=6.7e-12 Score=113.86 Aligned_cols=138 Identities=7% Similarity=0.020 Sum_probs=88.8
Q ss_pred hHHHhhhCCCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCC
Q 044773 2 YQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVW 81 (289)
Q Consensus 2 l~~~~~~~~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 81 (289)
+++++. +++|+|++++|+||++. ..++++|+++|+++|+++|+|++|....+ .... ..
T Consensus 142 l~~al~--~~TklV~lesPsNP~l~---v~dl~~I~~la~~~g~~vvVD~t~a~p~~-----~~pl------------~~ 199 (395)
T PRK05967 142 IAKLMR--PNTKVVHTEAPGSNTFE---MQDIPAIAEAAHRHGAIVMMDNTWATPLY-----FRPL------------DF 199 (395)
T ss_pred HHHhcC--cCceEEEEECCCCCCCc---HHHHHHHHHHHHHhCCEEEEECCccCcee-----cChh------------Hc
Confidence 344444 56999999999999754 55699999999999999999999975321 1111 23
Q ss_pred CceEEEecCccccC-CCCceEEEEEecCHHHHHHHHhccccCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHH
Q 044773 82 NRVHIVYSLSKDLG-LPGFRVGAIYSNDDTVVAAATKMSSFGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKL 160 (289)
Q Consensus 82 ~~~i~i~s~sK~~g-~~G~r~G~i~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l 160 (289)
+-++++.|++|+++ .++.-.|+++.+ +.+.+.+....... ...+...-+..++... +.+.-+.++..++...+
T Consensus 200 GaDivv~S~tKy~~Gh~d~~~G~v~~~-~~~~~~l~~~~~~~-G~~~~p~da~l~~rgl----~Tl~lR~~~~~~na~~l 273 (395)
T PRK05967 200 GVDISIHAATKYPSGHSDILLGTVSAN-EKCWPQLLEAHGTL-GLCAGPDDTYQILRGL----RTMGIRLEHHRKSALEI 273 (395)
T ss_pred CCCEEEEecccccCCCCCeeEEEEEcC-HHHHHHHHHHHHHc-CCCCCHHHHHHHHcCc----ccHHHHHHHHHHHHHHH
Confidence 56699999999985 456888877764 44433333222111 2222333333333332 22455556667777778
Q ss_pred HHHHHhc
Q 044773 161 VSGLEKA 167 (289)
Q Consensus 161 ~~~l~~~ 167 (289)
.+.|+++
T Consensus 274 A~~L~~h 280 (395)
T PRK05967 274 ARWLEGR 280 (395)
T ss_pred HHHHHhC
Confidence 8888876
No 281
>PF00266 Aminotran_5: Aminotransferase class-V; InterPro: IPR000192 Aminotransferases share certain mechanistic features with other pyridoxal- phosphate dependent enzymes, such as the covalent binding of the pyridoxal- phosphate group to a lysine residue. On the basis of sequence similarity, these various enzymes can be grouped [] into subfamilies. This entry represents the class V aminotransferases and the related, though functionally distinct, cysteine desulfurases.; GO: 0008152 metabolic process; PDB: 3FFR_A 1N2T_B 1ELQ_A 1N31_A 1ELU_B 1QZ9_A 1VJO_A 3ISL_B 1BJO_B 1BJN_B ....
Probab=99.48 E-value=7.1e-12 Score=113.62 Aligned_cols=206 Identities=18% Similarity=0.220 Sum_probs=134.4
Q ss_pred hHHHhhhCCCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCC
Q 044773 2 YQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVW 81 (289)
Q Consensus 2 l~~~~~~~~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 81 (289)
+++++. +++++++++..+|-||...+ +++|.++|+++++++++|.+++- +.....+. ..
T Consensus 132 ~~~~l~--~~~~lv~~~~~~~~tG~~~p---i~~I~~~~~~~~~~~~vD~~~~~----g~~~id~~------------~~ 190 (371)
T PF00266_consen 132 LEEALN--PDTRLVSISHVENSTGVRNP---IEEIAKLAHEYGALLVVDAAQSA----GCVPIDLD------------EL 190 (371)
T ss_dssp HHHHHH--TTESEEEEESBETTTTBBSS---HHHHHHHHHHTTSEEEEE-TTTT----TTSS--TT------------TT
T ss_pred hhhhhc--cccceEEeecccccccEEee---eceehhhhhccCCceeEechhcc----cccccccc------------cc
Confidence 455564 68999999999999999999 99999999999999999999983 33333332 33
Q ss_pred CceEEEecCccccCCCCceEEEEEecCHHHHHHHHhcc--------------------cc--CCCChHHHHHHHHHhCCc
Q 044773 82 NRVHIVYSLSKDLGLPGFRVGAIYSNDDTVVAAATKMS--------------------SF--GLVSSQTQYLLSALLSDK 139 (289)
Q Consensus 82 ~~~i~i~s~sK~~g~~G~r~G~i~~~~~~~~~~~~~~~--------------------~~--~~~~~~~q~~~~~~l~~~ 139 (289)
+.+++++|..|.+|.+| +|+++.+++.+........ .+ ++.+.+...++..+++..
T Consensus 191 ~~D~~~~s~~Kl~gp~G--~g~l~v~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~~~~~~~l~~al~~~ 268 (371)
T PF00266_consen 191 GADFLVFSSHKLGGPPG--LGFLYVRPEAIERLRPAKPGGGYLDFPSLQEYGLADDARRFEGGTPNVPAIYALNEALKLL 268 (371)
T ss_dssp TESEEEEESTSTTSSST--EEEEEEEHHHHHHHHTSSSSSSTTTHHHHHHHCHHSTTTGSSSSS--HHHHHHHHHHHHHH
T ss_pred ccceeeecccccCCCCc--hhhheehhhhhhccccccccccccccccchhcccccccccccccceeeehhhhHHHHHhhh
Confidence 66789999999445445 7999997654443311100 01 123445555555555543
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCceecC----CceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCC
Q 044773 140 KFAQNYISENKKRLKQRHRKLVSGLEKA-GISCLKS----NAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPG 214 (289)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~~~~~----~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg 214 (289)
. +.-+++..++..+..+++.+.|.++ ++.+..+ ..+-.+.+.++.. + ..++...|.++ ||.+..|
T Consensus 269 ~--~~g~~~i~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~------~~~~~~~L~~~-~I~~~~G 338 (371)
T PF00266_consen 269 E--EIGIERIRERIRELAEYLREALEELPGIEVLGPDDEPRRPSIVSFNLPGS-D------ADDVVKYLEER-GIAVSTG 338 (371)
T ss_dssp H--HHHHHHHHHHHHHHHHHHHHHHHHTTTEEESSSSCGGBGTTEEEEEETTS-S------HHHHHHHHHHH-TEEEEES
T ss_pred h--ccccccchhhhhhHHHHHHhhhhcCCceeEeeecccccccceEEEeecCC-C------HHHHHHHHhhc-CEEEecc
Confidence 1 3336677888899999999999988 4455332 1122344555332 1 24566666655 9999987
Q ss_pred CCCCC------CCCCeEEEEEec-CCHHHHHHH
Q 044773 215 SSCHC------TEPGWFRVCFAN-MSEDTLKLS 240 (289)
Q Consensus 215 ~~f~~------~~~~~~Ris~~~-~~~e~l~~~ 240 (289)
..+.. ...+.+|+|+.. ++++|++++
T Consensus 339 ~~~~~~~~~~~~~~~~iRvS~~~~nt~~dv~~l 371 (371)
T PF00266_consen 339 SACAGPSLDILGMGGVIRVSLHYYNTEEDVDRL 371 (371)
T ss_dssp TTTCHHHHHHHHTTTEEEEE-GTTSSHHHHHHH
T ss_pred CcccHHHHHHhCCCCEEEEeccCCCCHHHHhhC
Confidence 77651 113799999965 799999874
No 282
>PRK06931 diaminobutyrate--2-oxoglutarate aminotransferase; Provisional
Probab=99.47 E-value=1.1e-11 Score=115.03 Aligned_cols=216 Identities=13% Similarity=0.045 Sum_probs=130.7
Q ss_pred CccEEEEeCC-CCCCcc-CCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEe
Q 044773 11 KVKGVLVTNP-SNPLGT-TMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVY 88 (289)
Q Consensus 11 ~~~~i~l~~p-~NPtG~-~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~ 88 (289)
++-+ ++..| +.-.|. ..+.+.++++.++|+++|+++|.||++.+++.+|..+.. + ..+...-+.
T Consensus 225 ~iAA-vI~EPiqg~gG~~~~~~~yl~~lr~lc~~~g~LlI~DEV~tGfGRtG~~~a~--~-----------~~gv~PDiv 290 (459)
T PRK06931 225 KPAA-VILEAIQGEGGVNPAPVEWLQKIREVTQKHGILLIVDEVQAGFARTGKMFAF--E-----------HAGIEPDII 290 (459)
T ss_pred ceEE-EEEccccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEecchhcCCcCchHHHh--h-----------hcCCCCCEE
Confidence 3555 45556 444465 457889999999999999999999999998666653211 1 112233467
Q ss_pred cCccccCCCCceEEEEEecCHHHHHHHHh--ccccCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 044773 89 SLSKDLGLPGFRVGAIYSNDDTVVAAATK--MSSFGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEK 166 (289)
Q Consensus 89 s~sK~~g~~G~r~G~i~~~~~~~~~~~~~--~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 166 (289)
+++|.+| .|+++|.+++++ .+ +.+.. ..+.+..|++...++.+.|+...- + ...++.++..++|.+.|++
T Consensus 291 t~gK~l~-gG~Pi~av~~~~-~~-~~~~~~~~~~T~~gnpla~aaala~L~~l~~-~----~l~~~~~~~G~~l~~~L~~ 362 (459)
T PRK06931 291 VMSKAVG-GGLPLAVLGIKK-EF-DAWQPGGHTGTFRGNQLAMATGLTTLKILKE-E----NLAQNAAERGEWLKAQLAE 362 (459)
T ss_pred Eeccccc-CCcceeeeeeHH-HH-hhccCCCCCCCCCCCHHHHHHHHHHHHHHHh-C----CHHHHHHHHHHHHHHHHHH
Confidence 7899998 889999988854 33 33321 122334788887777776653211 1 1223333333444444433
Q ss_pred ----cCCceecCCceEEEEEecCccccC------C--ChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEEec-CC
Q 044773 167 ----AGISCLKSNAGLFCWVDMRHLLSS------N--TFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFAN-MS 233 (289)
Q Consensus 167 ----~g~~~~~~~~g~~~~i~~~~~~~~------~--~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ris~~~-~~ 233 (289)
+++......-|.++.+.+...... . ...-...+...++ +.||.+.++... ...+|+.++. ++
T Consensus 363 l~~~~~~i~~vrG~Glm~giel~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~Gvl~~~~~~~----~~~l~~~Ppl~it 437 (459)
T PRK06931 363 LQKRYPCIGNVRGRGLMIGIEIVDERQPADAMGSYPADGELAAAIQKACF-ENGLLLERGGRN----GNVVRLLPPLLIT 437 (459)
T ss_pred HHHhCCCeEeEecCceEEEEEEccCcccccccccCCccHHHHHHHHHHHH-HCCcEEeecCCC----CCEEEEECCCCcC
Confidence 333222222355666666432110 0 0011234555555 679999875322 3579998864 79
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 044773 234 EDTLKLSMQRLKAFVDSITT 253 (289)
Q Consensus 234 ~e~l~~~l~~l~~~l~~~~~ 253 (289)
+++++++++++.+++.+.-+
T Consensus 438 ~~eid~~~~~l~~~l~~~~~ 457 (459)
T PRK06931 438 QAECEEFIDRFEQALLAAVK 457 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999987543
No 283
>PRK08297 L-lysine aminotransferase; Provisional
Probab=99.47 E-value=4.5e-12 Score=117.23 Aligned_cols=210 Identities=14% Similarity=0.177 Sum_probs=122.6
Q ss_pred HHHhhhC-CCccEEEEeCC-CCCCcc-CCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCC
Q 044773 3 QLAQKRH-LKVKGVLVTNP-SNPLGT-TMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTE 79 (289)
Q Consensus 3 ~~~~~~~-~~~~~i~l~~p-~NPtG~-~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d 79 (289)
++++..+ .++.+ ++..| ..-.|. +.+.+.+++|.++|++||+++|.||++.+++.+|..+. .+..
T Consensus 216 ~~~i~~~~~~iAa-vI~EPi~g~~G~~~pp~~yl~~lr~lc~~~g~llI~DEV~tGfGRtG~~~a--~~~~--------- 283 (443)
T PRK08297 216 RAAFERHPHDIAC-FIAEPIQGEGGDNHFRPEFFAAMRELCDEHDALLIFDEVQTGVGLTGTAWA--YQQL--------- 283 (443)
T ss_pred HHHHHhCCCcEEE-EEEccccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhccCccchHHH--HHhc---------
Confidence 3445443 34555 44556 444454 47888999999999999999999999998866554321 1111
Q ss_pred CCCceEEEecCccccCCCCceEEEEEecCHHHHHH----HH---hccccCCCChHHHHHHHHHhCCchHHHHHHHHHHHH
Q 044773 80 VWNRVHIVYSLSKDLGLPGFRVGAIYSNDDTVVAA----AT---KMSSFGLVSSQTQYLLSALLSDKKFAQNYISENKKR 152 (289)
Q Consensus 80 ~~~~~i~i~s~sK~~g~~G~r~G~i~~~~~~~~~~----~~---~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~ 152 (289)
+...-+.+++|.++ .| |.+.. ++ +.+. +. ...+.+..|++...++.+.|+.... + ...++
T Consensus 284 --gv~PDiv~~gK~l~-~~---a~l~~-~~-i~~~~~~~~~~~~~~~~T~~gnpl~~aaa~a~L~~l~~-~----~l~~~ 350 (443)
T PRK08297 284 --GVRPDIVAFGKKTQ-VC---GIMAG-RR-VDEVEDNVFAVSSRINSTWGGNLVDMVRARRILEVIEE-D----GLVEN 350 (443)
T ss_pred --CCCCCEEEeccccc-cc---ceecc-hH-HHHhhhhhccCccccCCCCCccHHHHHHHHHHHHHHHh-c----CHHHH
Confidence 11122446899985 33 44444 32 2221 11 1122333677777776666653211 1 22233
Q ss_pred HHHHHHHHHHHHHh----cC-Cc-eecCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEE
Q 044773 153 LKQRHRKLVSGLEK----AG-IS-CLKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFR 226 (289)
Q Consensus 153 ~~~~~~~l~~~l~~----~g-~~-~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~R 226 (289)
.++..+++.+.|++ .+ +. ...+. |.++.+.+.+. .....+...++ ++||.+.|+. ...+|
T Consensus 351 ~~~~g~~l~~~L~~l~~~~~~~~~~vrg~-G~~~~i~~~~~------~~~~~~~~~l~-~~Gvl~~~~~------~~~lr 416 (443)
T PRK08297 351 AARQGEYLLARLEELAAEFPAVVSNVRGR-GLMCAFDLPTT------ADRDEVIRRLW-EEGVLVLPCG------ERSIR 416 (443)
T ss_pred HHHHHHHHHHHHHHHHHHCCCcceeeecc-ceEEEEEecCH------HHHHHHHHHHH-HCCEEEecCC------CCeEE
Confidence 33444444444433 22 21 22233 56666777532 11235777776 6799998743 24689
Q ss_pred EEEec-CCHHHHHHHHHHHHHHHHHH
Q 044773 227 VCFAN-MSEDTLKLSMQRLKAFVDSI 251 (289)
Q Consensus 227 is~~~-~~~e~l~~~l~~l~~~l~~~ 251 (289)
|+++. +++++++++++++.+++++.
T Consensus 417 ~~P~l~~t~~eid~~l~~l~~~l~~~ 442 (443)
T PRK08297 417 FRPALTVTTEEIDAAIDALRRALPEV 442 (443)
T ss_pred EECCccCCHHHHHHHHHHHHHHHHhh
Confidence 98743 79999999999999988754
No 284
>COG0161 BioA Adenosylmethionine-8-amino-7-oxononanoate aminotransferase [Coenzyme metabolism]
Probab=99.47 E-value=6.2e-12 Score=113.67 Aligned_cols=225 Identities=15% Similarity=0.098 Sum_probs=140.5
Q ss_pred hHHHhhhCC-CccEEEEeCC--CCCCccCC-CHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhcccccc
Q 044773 2 YQLAQKRHL-KVKGVLVTNP--SNPLGTTM-SRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCEN 77 (289)
Q Consensus 2 l~~~~~~~~-~~~~i~l~~p--~NPtG~~~-~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (289)
+|+.+..+. ..-+.++..| +.-+|..+ ++..++++.++|++||+++|.||+-.+++.+|..+..
T Consensus 203 le~~i~~~g~~~IAAfI~EPv~g~agG~~~pp~~Yl~~vr~iC~ky~ILlI~DEV~tGFGRTG~~FA~------------ 270 (449)
T COG0161 203 LEALILEHGPETIAAFIVEPVVGGAGGMLVPPPGYLKRVREICDKYGILLIADEVATGFGRTGKMFAC------------ 270 (449)
T ss_pred HHHHHHhcCcccEEEEEecccccccCCcccCChHHHHHHHHHHHHcCcEEEeecceeCCCcCchhhhh------------
Confidence 455555543 4445577778 44477766 5569999999999999999999999999888876543
Q ss_pred CCCCCceEEEecCccccCCCC-ceEEEEEecCHHHHHHHHhc--c-----ccCCCChHHHHHHHHHhCCchHHHHHHHHH
Q 044773 78 TEVWNRVHIVYSLSKDLGLPG-FRVGAIYSNDDTVVAAATKM--S-----SFGLVSSQTQYLLSALLSDKKFAQNYISEN 149 (289)
Q Consensus 78 ~d~~~~~i~i~s~sK~~g~~G-~r~G~i~~~~~~~~~~~~~~--~-----~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~ 149 (289)
+..+...-+.+++|.++ +| +++|.+++.+ .+.+.+... . ..+..|++...++.+-|+-..- ++++++
T Consensus 271 -e~~gi~PDi~~~aKGLT-~GY~Pl~a~l~~~-~I~~~~~~~~~~~f~HG~TYsghPlacAaAla~L~i~e~-e~l~~~- 345 (449)
T COG0161 271 -EHAGIVPDILCLAKGLT-GGYLPLSAVLTSD-RIYEAFSDGDAGAFMHGHTYSGNPLACAAALANLDILEE-EDLLER- 345 (449)
T ss_pred -hhcCCCCCeeeeccccc-ccchhhHhHhhhH-HHHHHHhcccCCeeccCCccccCHHHHHHHHHHHHHHHh-cCHHHH-
Confidence 23344556888999997 55 8888888854 444443322 1 1123677776665555543221 222333
Q ss_pred HHHHHHHHHHHHHHHHh----cCCceecCCceEEEEEecCccccCCChh--hHHHHHHHHHHhcCeEEeCCCCCCCCCCC
Q 044773 150 KKRLKQRHRKLVSGLEK----AGISCLKSNAGLFCWVDMRHLLSSNTFE--AEMELWKKIVYDVKLNISPGSSCHCTEPG 223 (289)
Q Consensus 150 ~~~~~~~~~~l~~~l~~----~g~~~~~~~~g~~~~i~~~~~~~~~~~~--~~~~~~~~ll~~~gi~v~pg~~f~~~~~~ 223 (289)
.++...+|.+.|++ +...-....-|++..+++.......... .....+...+.+.|+.++|.. .
T Consensus 346 ---~~~~~~~l~~~L~~~l~~~p~VgdVR~~Gli~~iElv~d~~t~~~f~~~~~~~~~~~~~e~Gl~iRp~g-------~ 415 (449)
T COG0161 346 ---VAEIGAYLQAGLQAALADHPLVGDVRGLGLIGAIELVADKATKTPFEARVGARVRAAALERGLLIRPLG-------D 415 (449)
T ss_pred ---HHHHHHHHHHHHHHhcccCCcEEEeeccceEEEEEEecccccccchhhhHHHHHHHHHHHCCeEEeecC-------C
Confidence 33444445555544 2222223344677777776654422101 111233333447799999962 2
Q ss_pred eEEEEEec-CCHHHHHHHHHHHHHHHHHHHH
Q 044773 224 WFRVCFAN-MSEDTLKLSMQRLKAFVDSITT 253 (289)
Q Consensus 224 ~~Ris~~~-~~~e~l~~~l~~l~~~l~~~~~ 253 (289)
.+-+++.. .++++++++++++.+.+++...
T Consensus 416 ~i~~~PPliit~~eid~l~~~l~~al~~~~~ 446 (449)
T COG0161 416 VIYLMPPLIITREEIDELVDALREALDETLA 446 (449)
T ss_pred EEEEcCCccCCHHHHHHHHHHHHHHHHHHHh
Confidence 56666644 6999999999999999987654
No 285
>PRK07030 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional
Probab=99.47 E-value=1.2e-11 Score=114.90 Aligned_cols=220 Identities=16% Similarity=0.108 Sum_probs=134.9
Q ss_pred HHHhhhC-CCccEEEEeCC--CCCCcc-CCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccC
Q 044773 3 QLAQKRH-LKVKGVLVTNP--SNPLGT-TMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENT 78 (289)
Q Consensus 3 ~~~~~~~-~~~~~i~l~~p--~NPtG~-~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (289)
++++..+ .++-+|++. | +.-.|. ..+.+.+++|.++|+++|+++|.||++.+++.+|..+.. +.
T Consensus 205 e~~~~~~~~~iAAvi~E-P~iqg~gG~~~~~~~yl~~lr~lc~~~g~llI~DEV~TGfGRtG~~~a~--~~--------- 272 (466)
T PRK07030 205 EQTLAEHHDEIAAVIVE-PLIQGAGGMRMYHPVYLKLLREACDRYGVHLIHDEIAVGFGRTGTMFAC--EQ--------- 272 (466)
T ss_pred HHHHHhCCCceEEEEEe-cccccCCCcccCCHHHHHHHHHHHHHcCCEEEEeehhhCcCccccchHH--Hh---------
Confidence 4555443 345554444 5 444465 557789999999999999999999999998766653221 11
Q ss_pred CCCCceEEEecCccccCCCC-ceEEEEEecCHHHHHHHHh---------ccccCCCChHHHHHHHHHhCCchHHHHHHHH
Q 044773 79 EVWNRVHIVYSLSKDLGLPG-FRVGAIYSNDDTVVAAATK---------MSSFGLVSSQTQYLLSALLSDKKFAQNYISE 148 (289)
Q Consensus 79 d~~~~~i~i~s~sK~~g~~G-~r~G~i~~~~~~~~~~~~~---------~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~ 148 (289)
++...-+.+++|.+| .| +++|.+++++ .+.+.+.. ..+.+..|++...++.+.|+...- ..
T Consensus 273 --~gv~PDiv~~gKgl~-gG~~Pi~av~~~~-ei~~~~~~~~~~~~~~~h~~T~~gnpla~aaa~a~L~~i~~-----~~ 343 (466)
T PRK07030 273 --AGIRPDFLCLSKALT-GGYLPLAAVLTTD-TVYQAFYDDYPTLRAFLHSHSYTGNPLACAAALATLDIFEQ-----DN 343 (466)
T ss_pred --cCCCCCEEeeehhcc-CCcccceEEEecH-HHHHHHhcccccccccccCCCCCCCHHHHHHHHHHHHHHHh-----cC
Confidence 122233666799998 89 5999999954 44444321 112233678887777776654321 12
Q ss_pred HHHHHHHHHHHHHHHHHhc---CCceecCCceEEEEEecCcccc-CCC----hhhHHHHHHHHHHhcCeEEeCCCCCCCC
Q 044773 149 NKKRLKQRHRKLVSGLEKA---GISCLKSNAGLFCWVDMRHLLS-SNT----FEAEMELWKKIVYDVKLNISPGSSCHCT 220 (289)
Q Consensus 149 ~~~~~~~~~~~l~~~l~~~---g~~~~~~~~g~~~~i~~~~~~~-~~~----~~~~~~~~~~ll~~~gi~v~pg~~f~~~ 220 (289)
..++.++..+++.+.|+++ ........-|+++.+.+..... ... .....++...++ ++||.+.+. +
T Consensus 344 l~~~~~~~G~~l~~~L~~l~~~~~v~~vrG~Gl~~gie~~~~~~~~~~~~~~~~~~~~i~~~~~-~~Gvl~~~~---g-- 417 (466)
T PRK07030 344 VIENNRALARRMAEATAHLADHPHVAEVRQTGMILAIEMVQDKASKTPYPWQERRGLKVYQHAL-ERGALLRPL---G-- 417 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCEEEeEeceeEEEEEeccCccccccCcchhHHHHHHHHHHH-HCCeEEEec---C--
Confidence 2334444445555555443 2211122235666677643211 000 011124566665 679999763 1
Q ss_pred CCCeEEEEEec-CCHHHHHHHHHHHHHHHHHH
Q 044773 221 EPGWFRVCFAN-MSEDTLKLSMQRLKAFVDSI 251 (289)
Q Consensus 221 ~~~~~Ris~~~-~~~e~l~~~l~~l~~~l~~~ 251 (289)
..+|+.++. +++++++++++++.+++++.
T Consensus 418 --~~i~~~Ppl~it~~eid~~~~~l~~al~~~ 447 (466)
T PRK07030 418 --SVVYFLPPYVITPEQIDFLAEVASEGIDIA 447 (466)
T ss_pred --CEEEEECCccCCHHHHHHHHHHHHHHHHHH
Confidence 368998753 79999999999999999987
No 286
>PRK06916 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional
Probab=99.46 E-value=8.9e-12 Score=115.79 Aligned_cols=221 Identities=15% Similarity=0.139 Sum_probs=134.1
Q ss_pred HHHhhhC-CCccEEEEeC-CCCCCccC-CCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCC
Q 044773 3 QLAQKRH-LKVKGVLVTN-PSNPLGTT-MSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTE 79 (289)
Q Consensus 3 ~~~~~~~-~~~~~i~l~~-p~NPtG~~-~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d 79 (289)
++++..+ .++-+|++.. ++.-.|.. .+.+.+++|.++|+++|+++|.||++.+++.+|..+.. +..
T Consensus 214 ~~~l~~~~~~iAAvi~EP~iqg~gG~~~~~~~fl~~lr~lc~~~g~llI~DEV~TG~GRtG~~~a~--~~~--------- 282 (460)
T PRK06916 214 EELLKEKHEEIAAIIVEPLVQGAGGMITMPKGYLKGLRNLCTKYNVLFITDEVATGFGRTGKMFAC--EHE--------- 282 (460)
T ss_pred HHHHHhCCCcEEEEEEeccccCCCCcccCCHHHHHHHHHHHHHcCCEEEeechhhCCCcCchhhHH--Hhc---------
Confidence 4455433 3555655554 25555665 58899999999999999999999999987665543211 111
Q ss_pred CCCceEEEecCccccCCCC-ceEEEEEecCHHHHHHHHh---------ccccCCCChHHHHHHHHHhCCchHHHHHHHHH
Q 044773 80 VWNRVHIVYSLSKDLGLPG-FRVGAIYSNDDTVVAAATK---------MSSFGLVSSQTQYLLSALLSDKKFAQNYISEN 149 (289)
Q Consensus 80 ~~~~~i~i~s~sK~~g~~G-~r~G~i~~~~~~~~~~~~~---------~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~ 149 (289)
+...-+.+++|.+| .| +++|.++++++ +.+.+.. ....+..|++...++.+.|+... + ...
T Consensus 283 --gv~PDiv~~gK~l~-gG~~Pi~av~~~~e-i~~~~~~~~~~~~~~~~~~T~~gnpl~~aaa~a~l~~l~---~--~~l 353 (460)
T PRK06916 283 --NVTPDIMTAGKGLT-GGYLPIAITVTTDE-IYNAFYGDYEEQKTFFHGHSYTGNPLGCAVALANLELYE---K--TNL 353 (460)
T ss_pred --CCCCCeeeeehhhh-cCccccceeeecHH-HHHHhhccccccCccccCCCCCCCHHHHHHHHHHHHHHH---h--ccH
Confidence 12222557899998 88 69999999654 4443321 11123367777777666665321 1 123
Q ss_pred HHHHHHHHHHHHHHHHhc---CCc-eecCCceEEEEEecCcccc-CCCh----hhHHHHHHHHHHhcCeEEeCCCCCCCC
Q 044773 150 KKRLKQRHRKLVSGLEKA---GIS-CLKSNAGLFCWVDMRHLLS-SNTF----EAEMELWKKIVYDVKLNISPGSSCHCT 220 (289)
Q Consensus 150 ~~~~~~~~~~l~~~l~~~---g~~-~~~~~~g~~~~i~~~~~~~-~~~~----~~~~~~~~~ll~~~gi~v~pg~~f~~~ 220 (289)
.++++++.+++.+.|+++ ... -.... |.++-+.+.+... .... .....+...++ +.||.+.|..
T Consensus 354 ~~~~~~~g~~l~~~l~~l~~~~~v~~vrG~-Glm~giel~~~~~~~~~~~~~~~~~~~i~~~~~-~~Gvl~~~~g----- 426 (460)
T PRK06916 354 IEQVARKTEYVATQLEDLFALKHVGDIRQL-GLMVGIELVKNKETKEPFEWTERVGVQVCKRSR-ELGMLTRPLG----- 426 (460)
T ss_pred HHHHHHHHHHHHHHHHHhhcCCCeEEeecC-CceeeEEeecccccccCCCchhhHHHHHHHHHH-HCCeEEEecC-----
Confidence 345555555666666553 211 12222 4455565543211 0000 11134566655 6799998731
Q ss_pred CCCeEEEEEec-CCHHHHHHHHHHHHHHHHHHH
Q 044773 221 EPGWFRVCFAN-MSEDTLKLSMQRLKAFVDSIT 252 (289)
Q Consensus 221 ~~~~~Ris~~~-~~~e~l~~~l~~l~~~l~~~~ 252 (289)
..+|+.++. +++++++++++++.+++++..
T Consensus 427 --~~l~~~Ppl~it~~~id~~~~~l~~~l~~~~ 457 (460)
T PRK06916 427 --NTIVFMPPLASTIDELDEMLRILYKAISDVT 457 (460)
T ss_pred --CEEEEeCCcccCHHHHHHHHHHHHHHHHhhc
Confidence 378998743 799999999999999998654
No 287
>PRK12389 glutamate-1-semialdehyde aminotransferase; Provisional
Probab=99.46 E-value=1.3e-11 Score=113.86 Aligned_cols=218 Identities=15% Similarity=0.149 Sum_probs=126.9
Q ss_pred hHHHhhhCC-CccEEEEeCC-CCCCccCC-CHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccC
Q 044773 2 YQLAQKRHL-KVKGVLVTNP-SNPLGTTM-SRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENT 78 (289)
Q Consensus 2 l~~~~~~~~-~~~~i~l~~p-~NPtG~~~-~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (289)
+++++..++ ++.+ ++..| ..-.|.+. +.+.+++|.++|+++|+++|+||++.++ ..+.. ...+..
T Consensus 190 l~~~l~~~~~~vaa-vi~EPv~g~~G~~~p~~~yl~~l~~lc~~~g~llI~DEV~tG~-Rt~~~--~a~~~~-------- 257 (428)
T PRK12389 190 LKEALDKWGDEVAA-VLVEPIVGNFGIVEPKPGFLEAVNELAHEAGALVIYDEVITAF-RFMYG--GAQDLL-------- 257 (428)
T ss_pred HHHHHHhcCCcEEE-EEEeCCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEEcccccc-ccCcc--hhhHHh--------
Confidence 455565443 3445 55556 66667654 6889999999999999999999999987 33322 111111
Q ss_pred CCCCceEEEecCccccCCCCceEEEEEecCHHHHHHHHh-----ccccCCCChHHHHHHHHHhCCchHHHHHHHHHHHHH
Q 044773 79 EVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDTVVAAATK-----MSSFGLVSSQTQYLLSALLSDKKFAQNYISENKKRL 153 (289)
Q Consensus 79 d~~~~~i~i~s~sK~~g~~G~r~G~i~~~~~~~~~~~~~-----~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~ 153 (289)
+...-+.+++|.+| .|+++|.++++ +.+.+.+.. ..+.+..|++...++.+.|+...- + ...+++
T Consensus 258 ---gv~PDivt~gK~lg-gG~Pi~av~~~-~~i~~~~~~~~~~~~~~T~~gnpl~~Aaala~L~~l~~-~----~l~~~~ 327 (428)
T PRK12389 258 ---GVEPDLTALGKIIG-GGLPIGAYGGR-KDIMEQVAPLGPAYQAGTMAGNPASMAAGIACLEVLQQ-E----GVYEKL 327 (428)
T ss_pred ---CCCCCeeeechhhc-CCCceeEEeEH-HHHHhhhccCCCcccccCCccCHHHHHHHHHHHHHHhc-c----cHHHHH
Confidence 11222568999998 88999999985 455555431 112233677777766666653211 1 233344
Q ss_pred HHHHHHHHHHHHh----cCCceec-CCceEEEEEecCccccC-------CChhhHHHHHHHHHHhcCeEEeCCCCCCCCC
Q 044773 154 KQRHRKLVSGLEK----AGISCLK-SNAGLFCWVDMRHLLSS-------NTFEAEMELWKKIVYDVKLNISPGSSCHCTE 221 (289)
Q Consensus 154 ~~~~~~l~~~l~~----~g~~~~~-~~~g~~~~i~~~~~~~~-------~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~ 221 (289)
+++.+++.+.|++ +++.... ..+|++ .+.+...... ........+...++ ++||.+.|.. .
T Consensus 328 ~~~g~~l~~~L~~l~~~~~~~~~v~r~~g~~-gi~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~~~~~~-~---- 400 (428)
T PRK12389 328 DRLGAMLEEGILEAAEKHGITITINRLKGAL-TVYFTDEKVTNYDQAERSDGEAFGKFFKLML-NQGINLAPSK-Y---- 400 (428)
T ss_pred HHHHHHHHHHHHHHHHhCCCCEEEEecCcEE-EEEEeCCCCCChhhhcccCHHHHHHHHHHHH-HCCcEeecCC-C----
Confidence 5555555555544 3432221 223333 2443321100 00011234566665 6799998752 1
Q ss_pred CCeEEEEEecCCHHHHHHHHHHHHHHHHH
Q 044773 222 PGWFRVCFANMSEDTLKLSMQRLKAFVDS 250 (289)
Q Consensus 222 ~~~~Ris~~~~~~e~l~~~l~~l~~~l~~ 250 (289)
+.+.+++. +++++++++++++.+++++
T Consensus 401 -~~~~~~l~-~t~e~id~~~~~l~~~l~~ 427 (428)
T PRK12389 401 -EAWFLTTA-HTEEDIEETLEAVDRAFAQ 427 (428)
T ss_pred -CCeeecCC-CCHHHHHHHHHHHHHHHHh
Confidence 12445544 6999999999999998864
No 288
>PRK05630 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional
Probab=99.45 E-value=8.6e-12 Score=114.67 Aligned_cols=206 Identities=17% Similarity=0.136 Sum_probs=128.0
Q ss_pred CccEEEEeCC-CCCCccC-CCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEe
Q 044773 11 KVKGVLVTNP-SNPLGTT-MSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVY 88 (289)
Q Consensus 11 ~~~~i~l~~p-~NPtG~~-~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~ 88 (289)
++-+|++... +.-.|.. .+.+.+++|.++|++||+++|+||++.+++.+|..+. .+.. +....+.
T Consensus 200 ~iAAvi~EPi~qg~gG~~~~~~~~l~~lr~lc~~~g~llI~DEv~tG~GrtG~~~a--~~~~-----------gv~PDi~ 266 (422)
T PRK05630 200 TVAAIIIEPIVQGAGGMRFHDVALIEGVRTLCDKHDILLIADEIATGFGRTGELFA--TLAA-----------GVTPDIM 266 (422)
T ss_pred ceEEEEEechhcCcCCcccCCHHHHHHHHHHHHHcCCEEEEecceeCCCcCchhhH--HHhc-----------CCCCCee
Confidence 5666555542 5656764 5678999999999999999999999988755554321 1111 1122244
Q ss_pred cCccccCCCC-ceEEEEEecCHHHHHHHHh--------ccccCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHH
Q 044773 89 SLSKDLGLPG-FRVGAIYSNDDTVVAAATK--------MSSFGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRK 159 (289)
Q Consensus 89 s~sK~~g~~G-~r~G~i~~~~~~~~~~~~~--------~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 159 (289)
+++|.++ .| .++|++++++ .+.+.+.. ..+.+..|++...++.+.|+... + ....++++++.++
T Consensus 267 t~gK~l~-gG~~p~~av~~~~-~i~~~~~~~~~~~~~~h~~T~~g~Pla~aaa~aaL~~l~---~--~~~~~~~~~~g~~ 339 (422)
T PRK05630 267 CVGKALT-GGFMSFAATLCTD-KVAQLISTPNGGGALMHGPTFMANPLACAVAHASLEIIE---T--GMWRKQVKRIEAE 339 (422)
T ss_pred eeechhh-cCccccceeeccH-HHHHHHhccCCCCccccCCCCcCCHHHHHHHHHHHHHHH---h--CcHHHHHHHHHHH
Confidence 8899997 67 5899999954 44544431 12223367777777666665322 1 1223345555555
Q ss_pred HHHHHHhc-CCcee--cCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEEec-CCHH
Q 044773 160 LVSGLEKA-GISCL--KSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFAN-MSED 235 (289)
Q Consensus 160 l~~~l~~~-g~~~~--~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ris~~~-~~~e 235 (289)
+.+.|+++ ..... ...-|.++.+.+..... ...+...++ ++||.+.+. + ..+||.++. .+++
T Consensus 340 l~~~L~~l~~~~~v~~vRg~Gl~~~ie~~~~~~------~~~~~~~~~-~~Gl~~~~~---g----~~l~~~PpL~it~~ 405 (422)
T PRK05630 340 LIAGLSPLAHLPGVADVRVLGAIGVVEMEQPVD------MEEATQAAV-DHGVWLRPF---G----RLVYVMPPYITTSE 405 (422)
T ss_pred HHHHHHHhhcCCCeeeeeccccEEEEEECCccc------HHHHHHHHH-HCCeEEEec---C----CEEEEECCccCCHH
Confidence 55555543 11111 11125666677754311 134666655 679998763 1 478999964 7999
Q ss_pred HHHHHHHHHHHHHHH
Q 044773 236 TLKLSMQRLKAFVDS 250 (289)
Q Consensus 236 ~l~~~l~~l~~~l~~ 250 (289)
++++++++|.++++.
T Consensus 406 ~i~~~~~~l~~al~~ 420 (422)
T PRK05630 406 QIAQICAALAAAVKA 420 (422)
T ss_pred HHHHHHHHHHHHHhc
Confidence 999999999998864
No 289
>PRK07046 aminotransferase; Validated
Probab=99.45 E-value=1.7e-11 Score=113.60 Aligned_cols=220 Identities=12% Similarity=0.074 Sum_probs=123.0
Q ss_pred hHHHhhhCCCccEEEEeCC-CCCCc-cCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCC
Q 044773 2 YQLAQKRHLKVKGVLVTNP-SNPLG-TTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTE 79 (289)
Q Consensus 2 l~~~~~~~~~~~~i~l~~p-~NPtG-~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d 79 (289)
+++++.. .++.+ ++..| ..-.| ...+.+.++++.++|+++|+++|.||++. +.. |... ..+..
T Consensus 210 l~~~l~~-~~vAa-vi~EPi~g~~G~~~p~~~fl~~lr~lc~~~g~llI~DEV~t-fr~-g~Gg--~~~~~--------- 274 (453)
T PRK07046 210 LEAALAD-GDVAA-VLAEPAMTNIGMVLPEPGFHEALRELTRRYGTLLVIDETHT-ISS-GPGG--YTRAH--------- 274 (453)
T ss_pred HHHHhCC-CCeEE-EEECCCCCCCCCcCCCHHHHHHHHHHHHHhCCEEEEEcccc-Ccc-CCcc--hhHHh---------
Confidence 3445532 35555 55556 43334 44566799999999999999999999997 322 1111 12221
Q ss_pred CCCceEEEecCccccCCCCceEEEEEecCHHHHHHHHh-----------ccccCCCChHHHHHHHHHhCCchHHHHHHHH
Q 044773 80 VWNRVHIVYSLSKDLGLPGFRVGAIYSNDDTVVAAATK-----------MSSFGLVSSQTQYLLSALLSDKKFAQNYISE 148 (289)
Q Consensus 80 ~~~~~i~i~s~sK~~g~~G~r~G~i~~~~~~~~~~~~~-----------~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~ 148 (289)
+...-+.+++|.+| .|+++|.+++++ .+.+.+.. ..+.+..|++...+..+.|+...- .+..+.
T Consensus 275 --gv~PDi~t~gK~lg-gG~Pi~av~g~~-~i~~~~~~~~~~~~~~~~~~~~T~~gnpl~~aa~~a~L~~l~~-~~~~~~ 349 (453)
T PRK07046 275 --GLEPDFLVVGKPIA-GGVPCAVYGFSA-ELAERAQAAKASAPPGHSGIGTTLSANALAMAAMRATLAEVMT-EAAYAH 349 (453)
T ss_pred --CCCccceeehhhhc-CCCcceeeeehH-HHHHHHhhccccCCCCCceeCCCCcccHHHHHHHHHHHHHHhc-ccHHHH
Confidence 22233557999998 899999999954 44554431 112333677777776666553211 111222
Q ss_pred HHHHHHHHHHHHHHHHHhcCCcee-cCCceEEEEEecCccccCC--------ChhhHHHHHHHHHHhcCeEEeCCCCCCC
Q 044773 149 NKKRLKQRHRKLVSGLEKAGISCL-KSNAGLFCWVDMRHLLSSN--------TFEAEMELWKKIVYDVKLNISPGSSCHC 219 (289)
Q Consensus 149 ~~~~~~~~~~~l~~~l~~~g~~~~-~~~~g~~~~i~~~~~~~~~--------~~~~~~~~~~~ll~~~gi~v~pg~~f~~ 219 (289)
..+.-+..++.|.+.+.+.++... ...|.+ +.+.+....... ...-...+...++ ++||.+.|..
T Consensus 350 ~~~~g~~l~~~L~~l~~~~~~~~~v~g~G~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~Gv~~~~~~---- 423 (453)
T PRK07046 350 MLALAARLAAGLRAVIARHGLPWHVTRVGAR-VEFQFAPTPPRNGAEAAAALDPELEAALHLYLL-NRGVLITPFH---- 423 (453)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCeEEEEeCcE-EEEEEeCCCCCCHHHHhcccCHHHHHHHHHHHH-HCCCEEeccc----
Confidence 222222222333333344454332 222322 333332111000 0011123555666 5699988631
Q ss_pred CCCCeEEEEEecCCHHHHHHHHHHHHHHHHHH
Q 044773 220 TEPGWFRVCFANMSEDTLKLSMQRLKAFVDSI 251 (289)
Q Consensus 220 ~~~~~~Ris~~~~~~e~l~~~l~~l~~~l~~~ 251 (289)
+.++++++ +++++++.+++++.+++++.
T Consensus 424 ---~~~~~~p~-~t~~did~~~~~~~~~l~~~ 451 (453)
T PRK07046 424 ---NMMLVCPA-TTAADVDRLVAAFDACLGEL 451 (453)
T ss_pred ---CcEEEeCC-CCHHHHHHHHHHHHHHHHHH
Confidence 35788887 69999999999999988764
No 290
>PRK06702 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=99.45 E-value=1.5e-11 Score=112.69 Aligned_cols=136 Identities=15% Similarity=0.117 Sum_probs=87.1
Q ss_pred HHHhhhCCCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCC
Q 044773 3 QLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWN 82 (289)
Q Consensus 3 ~~~~~~~~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 82 (289)
+++++ +++|+|++++|+||++.+.+ +++|.++|+++|+++|+|+.|... ...... ..+
T Consensus 141 ~~~I~--~~Tk~I~~e~pgnP~~~v~D---i~~I~~iA~~~gi~livD~T~~tP-----~~~~pl------------~~G 198 (432)
T PRK06702 141 VALAN--DKTKLVYAESLGNPAMNVLN---FKEFSDAAKELEVPFIVDNTLATP-----YLCQAF------------EHG 198 (432)
T ss_pred HHhCC--cCCeEEEEEcCCCccccccC---HHHHHHHHHHcCCEEEEECCCCch-----hhCChh------------hcC
Confidence 44443 57999999999999999999 999999999999999999998621 111111 224
Q ss_pred ceEEEecCcccc-----CCCCceE-----EEEEecCHHHHH-----------------------HHHhcccc-CCCChHH
Q 044773 83 RVHIVYSLSKDL-----GLPGFRV-----GAIYSNDDTVVA-----------------------AATKMSSF-GLVSSQT 128 (289)
Q Consensus 83 ~~i~i~s~sK~~-----g~~G~r~-----G~i~~~~~~~~~-----------------------~~~~~~~~-~~~~~~~ 128 (289)
-++++.|+||++ +++|.++ +|..+++..+.. .......+ ...++..
T Consensus 199 ADIvv~S~TKy~~Ghsd~l~G~v~~~~~~~w~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~sp~~ 278 (432)
T PRK06702 199 ANIIVHSTTKYIDGHASSLGGIVIDGGNFDWTNGKYPELVEPDPSYHGVSYVQNFGAAAYIVKARVQLLRDYGNCMSPFN 278 (432)
T ss_pred CCEEEEccccccCCCcceeceEEEeCCCcccccccccccccccccccccchhhccchhhHHHHHHHHHHHHccCCCCHHH
Confidence 459999999955 3445454 344332221110 11111222 2356676
Q ss_pred HHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 044773 129 QYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEKA 167 (289)
Q Consensus 129 q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 167 (289)
...+...|+.. ..+.++..++...+.+.|+++
T Consensus 279 a~l~~rgL~Tl-------~lR~~r~~~Na~~la~~L~~~ 310 (432)
T PRK06702 279 AYISNIGLETL-------HLRMERHSENALAVAKWLADH 310 (432)
T ss_pred HHHHHhccCcH-------HHHHHHHHHHHHHHHHHHHhC
Confidence 66677767653 333333457778888888876
No 291
>COG0001 HemL Glutamate-1-semialdehyde aminotransferase [Coenzyme metabolism]
Probab=99.45 E-value=1.7e-11 Score=109.61 Aligned_cols=222 Identities=15% Similarity=0.142 Sum_probs=136.5
Q ss_pred ChHHHhhhCCCccEEEEeCC--CCCCcc-CCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhcccccc
Q 044773 1 AYQLAQKRHLKVKGVLVTNP--SNPLGT-TMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCEN 77 (289)
Q Consensus 1 ~l~~~~~~~~~~~~i~l~~p--~NPtG~-~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (289)
++++++++.++--+-||..| .|. |. ...++.++.|.++|+++|+++|.||+..++.+.-........
T Consensus 189 al~~~~~~~g~~IAaVIvEPv~gn~-g~i~p~~~Fl~~Lr~lt~e~G~lLI~DEViTGFR~~~gGaq~~~g--------- 258 (432)
T COG0001 189 ALEEAFEEYGDDIAAVIVEPVAGNM-GVVPPEPGFLEGLRELTEEHGALLIFDEVITGFRVALGGAQGYYG--------- 258 (432)
T ss_pred HHHHHHHHcCCcEEEEEeccccCCC-CCCCCCHHHHHHHHHHHHHcCcEEEEecchhhcccCCcccccccC---------
Confidence 36888888854444466667 675 55 456668999999999999999999999987554222223333
Q ss_pred CCCCCceEEEecCccccCCCCceEEEEEecCHHHHHHHH-hc----cccCCCChHHHHHHHHHhCCchHHHHHHHHHHHH
Q 044773 78 TEVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDTVVAAAT-KM----SSFGLVSSQTQYLLSALLSDKKFAQNYISENKKR 152 (289)
Q Consensus 78 ~d~~~~~i~i~s~sK~~g~~G~r~G~i~~~~~~~~~~~~-~~----~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~ 152 (289)
...-+.+|+|.+| .|+++|.+.++ ..+.+.+. .. .+....|++...+..+.++.... . ....++
T Consensus 259 -----i~PDlttlGKiIG-GGlP~ga~gGr-~eiM~~~~p~g~vyqaGT~sgnplamaAG~atl~~l~~-~---~~~y~~ 327 (432)
T COG0001 259 -----VEPDLTTLGKIIG-GGLPIGAFGGR-AEIMEQLAPLGPVYQAGTLSGNPLAMAAGLATLEELMT-E---EGVYER 327 (432)
T ss_pred -----cCcchhhhhhhhc-CCcceeeeccH-HHHHhhhCCCCCccccCCCCCcHHHHHHHHHHHHHHHh-c---ccHHHH
Confidence 3344889999999 99999999995 44444332 11 22333677777776666664321 0 013344
Q ss_pred HHHHHHHHHHHHH----hcCCceecC-CceEEEEEecCcc-ccC------CChhhHHHHHHHHHHhcCeEEeCCCCCCCC
Q 044773 153 LKQRHRKLVSGLE----KAGISCLKS-NAGLFCWVDMRHL-LSS------NTFEAEMELWKKIVYDVKLNISPGSSCHCT 220 (289)
Q Consensus 153 ~~~~~~~l~~~l~----~~g~~~~~~-~~g~~~~i~~~~~-~~~------~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~ 220 (289)
+.+..++|.+.|+ ++|+.+... .++++. +-+.+. ... .......++...++ +.||.+.|+.+=
T Consensus 328 l~~~~~~L~~gl~~~~~~~g~~~~v~~~gsm~~-i~F~~~~~~n~~da~~sd~~~~~~~~~~~l-~~GV~l~ps~~e--- 402 (432)
T COG0001 328 LDALGERLAEGLRAAAERHGIPLTVNRVGSMFG-IFFTEEGVRNYADAKRSDVERFAKFFHHLL-NRGVYLAPSQFE--- 402 (432)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCeEEeeecceEE-EEecCCCCCCHHHHHhhchHHHHHHHHHHH-hCCcccCCcccc---
Confidence 4444555555554 447665432 333333 222221 110 01112234666777 559999986421
Q ss_pred CCCeEEEEEecCCHHHHHHHHHHHHHHHHHHH
Q 044773 221 EPGWFRVCFANMSEDTLKLSMQRLKAFVDSIT 252 (289)
Q Consensus 221 ~~~~~Ris~~~~~~e~l~~~l~~l~~~l~~~~ 252 (289)
..=+|.+ +++++++..++++.++++...
T Consensus 403 ---a~flS~a-hte~di~~~~~a~~~~~~~~~ 430 (432)
T COG0001 403 ---AGFLSTA-HTEEDIDRTLEAADEAFKELA 430 (432)
T ss_pred ---ceeeecc-cCHHHHHHHHHHHHHHHHHhh
Confidence 1235556 699999999999998877653
No 292
>PRK06209 glutamate-1-semialdehyde 2,1-aminomutase; Provisional
Probab=99.44 E-value=1.1e-11 Score=114.35 Aligned_cols=216 Identities=13% Similarity=0.170 Sum_probs=120.8
Q ss_pred hHHHhhhCCCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCC
Q 044773 2 YQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVW 81 (289)
Q Consensus 2 l~~~~~~~~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 81 (289)
+++++..+++..+.++..|- .|...+.+.+++|.++|++||+++|+||++.++.+.+ ....+..
T Consensus 177 l~~~l~~~~~~~aavi~Epv--~g~~~~~~~l~~l~~lc~~~g~lLI~DEv~tG~~~~~---~g~~~~~----------- 240 (431)
T PRK06209 177 LEALFEDHPGRIACVILEPA--TADEPQDGFLHEVRRLCHENGALFILDEMITGFRWHM---RGAQKLY----------- 240 (431)
T ss_pred HHHHHHhCCCCEEEEEEccc--cCCCCCHHHHHHHHHHHHHcCCEEEEEcccccCCcCc---chhhHHh-----------
Confidence 45556544333344555662 2446788999999999999999999999998764421 1112111
Q ss_pred CceEEEecCccccCCCCceEEEEEecCHHHHHH--HH-----h---ccccCCCChHHHHHHHHHhCCchHHHHHHHHHHH
Q 044773 82 NRVHIVYSLSKDLGLPGFRVGAIYSNDDTVVAA--AT-----K---MSSFGLVSSQTQYLLSALLSDKKFAQNYISENKK 151 (289)
Q Consensus 82 ~~~i~i~s~sK~~g~~G~r~G~i~~~~~~~~~~--~~-----~---~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~ 151 (289)
+...-+.+++|.+| .|+++|++++++ .+.+. +. . ..+....|++...++.+.|+... + ....+
T Consensus 241 gv~PDi~t~gK~lg-gG~p~~av~~~~-~i~~~~~~~~~~~~~~~~~~~T~~~np~~~aaa~a~l~~i~---~--~~~~~ 313 (431)
T PRK06209 241 GIVPDLSCFGKALG-NGFAVSALAGKR-EYMELGGLEHTDRERVFLLSTTHGAETHALAAAIATMAIYR---D--EDVIE 313 (431)
T ss_pred CCCcceeeehhhhc-CCcccEEEEEHH-HHHhhhcccccCCCCceeeccCCCCCHHHHHHHHHHHHHHh---c--cCHHH
Confidence 11123588999998 789999999954 44443 21 0 11222245555555545444321 1 12344
Q ss_pred HHHHHHHHHHHHHHh----cCCcee-cCCceEEEEEecC-ccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeE
Q 044773 152 RLKQRHRKLVSGLEK----AGISCL-KSNAGLFCWVDMR-HLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWF 225 (289)
Q Consensus 152 ~~~~~~~~l~~~l~~----~g~~~~-~~~~g~~~~i~~~-~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~ 225 (289)
+++++.+++.+.|++ +++... ...|.+..+.-+. .........-...+...++ +.||.+.| +
T Consensus 314 ~~~~~g~~l~~~L~~~~~~~~~~~~vr~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gi~~p~-----------l 381 (431)
T PRK06209 314 RLHEQGAKLAAGVNEAAAEHGLQDHVRVSGRPCCLTYSTLDGNGQPSQAFRTLFLQETI-RRGVLMPS-----------L 381 (431)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCeEEEeecceEEEEEecCCcccCCcHHHHHHHHHHHH-HCCccccc-----------c
Confidence 444445555555543 444321 1123222211111 1111111111124566666 56987622 4
Q ss_pred EEEEecCCHHHHHHHHHHHHHHHHHHHH
Q 044773 226 RVCFANMSEDTLKLSMQRLKAFVDSITT 253 (289)
Q Consensus 226 Ris~~~~~~e~l~~~l~~l~~~l~~~~~ 253 (289)
+|+.. +++++++++++++.+++++...
T Consensus 382 ~is~~-ht~~dId~~l~~l~~~l~~~~~ 408 (431)
T PRK06209 382 VVSYA-HGDADIERTIDAVHGALGVYRK 408 (431)
T ss_pred ccccc-CCHHHHHHHHHHHHHHHHHHHH
Confidence 66654 6999999999999999988743
No 293
>COG0626 MetC Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism]
Probab=99.44 E-value=2.2e-11 Score=109.31 Aligned_cols=131 Identities=18% Similarity=0.206 Sum_probs=94.2
Q ss_pred CCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEec
Q 044773 10 LKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVYS 89 (289)
Q Consensus 10 ~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~s 89 (289)
+++|+|++.+|+||+-.+.+ +++|.++|+++|+++|+|+.|....+- ... ..+-+|++.|
T Consensus 148 ~~tk~v~lEtPsNP~l~v~D---I~~i~~~A~~~g~~vvVDNTfatP~~q-----~PL------------~~GaDIVvhS 207 (396)
T COG0626 148 PNTKLVFLETPSNPLLEVPD---IPAIARLAKAYGALVVVDNTFATPVLQ-----RPL------------ELGADIVVHS 207 (396)
T ss_pred cCceEEEEeCCCCccccccc---HHHHHHHHHhcCCEEEEECCccccccc-----Chh------------hcCCCEEEEe
Confidence 47999999999999977777 999999999999999999999864332 111 2256699999
Q ss_pred CccccC-CCCceEEEEEecCHHHHHHHH-hcc-ccCC-CChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044773 90 LSKDLG-LPGFRVGAIYSNDDTVVAAAT-KMS-SFGL-VSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLE 165 (289)
Q Consensus 90 ~sK~~g-~~G~r~G~i~~~~~~~~~~~~-~~~-~~~~-~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 165 (289)
.+|+++ .+.+=.|.++++++.+.+.+. ... .++. .++...+.+.+-++. +.-+.++..++...+.+.|+
T Consensus 208 aTKyl~GHsDvl~G~v~~~~~~~~~~~~~~~~~~~G~~l~p~dA~l~lRGlkT-------L~~Rm~~~~~nA~~IA~~L~ 280 (396)
T COG0626 208 ATKYLGGHSDVLGGVVLTPNEELYELLFFAQRANTGAVLSPFDAWLLLRGLRT-------LALRMERHNENALKIAEFLA 280 (396)
T ss_pred ccccccCCcceeeeEEecChHHHHHHHHHHHHhhcCCCCCHHHHHHHHhccch-------HHHHHHHHHHHHHHHHHHHh
Confidence 999995 445777877777777776652 222 2332 444555555544444 45556667777888888888
Q ss_pred hc
Q 044773 166 KA 167 (289)
Q Consensus 166 ~~ 167 (289)
++
T Consensus 281 ~~ 282 (396)
T COG0626 281 DH 282 (396)
T ss_pred cC
Confidence 86
No 294
>cd00615 Orn_deC_like Ornithine decarboxylase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD corresponds to ornithine decarboxylase (ODC), arginine decarboxylase (ADC) and lysine decarboxylase (LDC). ODC is a dodecamer composed of six homodimers and catalyzes the decarboxylation of tryptophan. ADC catalyzes the decarboxylation of arginine and LDC catalyzes the decarboxylation of lysine. Members of this family are widely found in all three forms of life.
Probab=99.43 E-value=3.9e-13 Score=118.05 Aligned_cols=146 Identities=18% Similarity=0.165 Sum_probs=89.6
Q ss_pred hHHHhhhCCCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCC-ccCCCCccChhhhhhccccccCCC
Q 044773 2 YQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGT-VFSSPGFVSIMEILKDRNCENTEV 80 (289)
Q Consensus 2 l~~~~~~~~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~-~~~~~~~~~~~~~~~~~~~~~~d~ 80 (289)
++++++++++++++++++| ||+|.+++ +++|+++|+++|+++|+|++|... .+.+....+.. .
T Consensus 145 l~~~l~~~~~~k~v~l~~p-~~~G~~~d---l~~I~~~~~~~g~~livDeA~~~~~~~~~~~~~~~~------------~ 208 (294)
T cd00615 145 FKKALIEHPDAKAAVITNP-TYYGICYN---LRKIVEEAHHRGLPVLVDEAHGAHFRFHPILPSSAA------------M 208 (294)
T ss_pred HHHHHHhCCCceEEEEECC-CCCCEecC---HHHHHHHHHhcCCeEEEECcchhhhccCcccCcchh------------h
Confidence 5677776678999999999 78999998 899999999999999999999753 23222111111 2
Q ss_pred CCceEEEecCccccCCCCceEEEE-EecCHHH-HHHHHhccccCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHH
Q 044773 81 WNRVHIVYSLSKDLGLPGFRVGAI-YSNDDTV-VAAATKMSSFGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHR 158 (289)
Q Consensus 81 ~~~~i~i~s~sK~~g~~G~r~G~i-~~~~~~~-~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 158 (289)
.+.++++.|++|++ +|++.|++ .+++... ...+.........++++...++.+.....++..+.++..+.+.++.+
T Consensus 209 ~~~div~~S~hK~l--~g~~~~~~l~~~~~~~~~~~~~~~~~~~~ttsps~~~~asl~~a~~~~~~~g~~~~~~~~~~~~ 286 (294)
T cd00615 209 AGADIVVQSTHKTL--PALTQGSMIHVKGDLVNPDRVNEALNLHQSTSPSYLILASLDVARAMMALEGKELVEELIELAL 286 (294)
T ss_pred cCCcEEEEchhccc--chHhHHHHHHhCCCcCCHHHHHHHHHHHCCCCcHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 36779999999987 56665444 4543311 22222222222233333333333333333333334555556666666
Q ss_pred HHHHHHH
Q 044773 159 KLVSGLE 165 (289)
Q Consensus 159 ~l~~~l~ 165 (289)
.+++.+.
T Consensus 287 ~~r~~l~ 293 (294)
T cd00615 287 YARQEIN 293 (294)
T ss_pred HHHHHHh
Confidence 6666654
No 295
>PRK07812 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=99.43 E-value=4.7e-11 Score=109.98 Aligned_cols=78 Identities=18% Similarity=0.172 Sum_probs=62.2
Q ss_pred CCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEec
Q 044773 10 LKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVYS 89 (289)
Q Consensus 10 ~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~s 89 (289)
+++++|++.+|+||+|.+.+ +++|.++|+++|+++|+|+++... ....++ ..+-++++.|
T Consensus 154 ~~tklV~ie~~sNp~G~v~D---l~~I~~la~~~gi~liVD~t~a~~----~~~~pl-------------~~GaDivv~S 213 (436)
T PRK07812 154 PNTKAFFAETISNPQIDVLD---IPGVAEVAHEAGVPLIVDNTIATP----YLIRPL-------------EHGADIVVHS 213 (436)
T ss_pred CCCeEEEEECCCCCCCeecC---HHHHHHHHHHcCCEEEEECCCccc----ccCCch-------------hcCCCEEEEe
Confidence 57899999999999999999 999999999999999999998742 111111 1245588899
Q ss_pred CccccCCCCceEEEEEec
Q 044773 90 LSKDLGLPGFRVGAIYSN 107 (289)
Q Consensus 90 ~sK~~g~~G~r~G~i~~~ 107 (289)
++|.+|..|--+|.+++.
T Consensus 214 ~tK~lgg~G~~i~G~vv~ 231 (436)
T PRK07812 214 ATKYLGGHGTAIAGVIVD 231 (436)
T ss_pred cccccCCCCCeEEEEEEc
Confidence 999998777777777663
No 296
>PLN03226 serine hydroxymethyltransferase; Provisional
Probab=99.42 E-value=3.9e-11 Score=111.66 Aligned_cols=219 Identities=13% Similarity=0.092 Sum_probs=134.4
Q ss_pred hHHHhhhCCCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCC
Q 044773 2 YQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVW 81 (289)
Q Consensus 2 l~~~~~~~~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 81 (289)
+++++.+. ++++|++. .++ +|...+ +++|.++|+++|+++++|++|...........+. ..
T Consensus 175 Le~~l~~~-~pklIv~~-~S~-~s~~~D---~a~i~~ia~~~ga~LlvD~AH~~Gli~~~~~~~p-------------~~ 235 (475)
T PLN03226 175 LEKKAMLF-RPKLIIAG-ASA-YPRDWD---YARMRKIADKVGALLMCDMAHISGLVAAQEAASP-------------FE 235 (475)
T ss_pred HHHHHhhc-CCeEEEEe-cCc-CCCccC---HHHHHHHHHHcCCEEEEEchhhhCcccCCCCCCC-------------CC
Confidence 45556544 57776553 344 566666 8899999999999999999998543332221111 11
Q ss_pred CceEEEecCcccc-CCCCceEEEEEecCHHHH----------HH---HHhc--cccCC-CChHHHHHHHHHhCCchHHHH
Q 044773 82 NRVHIVYSLSKDL-GLPGFRVGAIYSNDDTVV----------AA---ATKM--SSFGL-VSSQTQYLLSALLSDKKFAQN 144 (289)
Q Consensus 82 ~~~i~i~s~sK~~-g~~G~r~G~i~~~~~~~~----------~~---~~~~--~~~~~-~~~~~q~~~~~~l~~~~~~~~ 144 (289)
..+++++|++|++ |..| |+++++++... +. +... ..+.. +++....++..+++... ..
T Consensus 236 ~~Div~~t~hK~L~GP~G---g~I~~~~~~~~~~~~g~~~~~d~~~~i~~a~~~~~~g~p~~~~iaal~aAl~~i~--~~ 310 (475)
T PLN03226 236 YCDVVTTTTHKSLRGPRG---GMIFFRKGPKPPKGQGEGAVYDYEDKINFAVFPGLQGGPHNHTIAALAVALKQAM--TP 310 (475)
T ss_pred CCeEEEecCcccccCCCc---eEEEEchhhcccccCCCccHHHHHHHhccccCCccCCCchHHHHHHHHHHHHHHh--Cc
Confidence 3458899999999 5456 88888654220 22 2211 11221 22233333344344221 12
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCceecCC-ceEEEEEecCc-cccCCChhhHHHHHHHHHHhcCeEEeCCCCCC---C
Q 044773 145 YISENKKRLKQRHRKLVSGLEKAGISCLKSN-AGLFCWVDMRH-LLSSNTFEAEMELWKKIVYDVKLNISPGSSCH---C 219 (289)
Q Consensus 145 ~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~-~g~~~~i~~~~-~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~---~ 219 (289)
..++.++++.++.++|.+.|.+.|+++..+. ....+++++.. .... ......+++.||.+..+.-++ +
T Consensus 311 ~~~~~~~~~~~na~~L~~~L~~~G~~l~~~~t~~hi~lv~~~~~gi~~-------~~~~~~L~~~~I~~nk~~~p~~~~~ 383 (475)
T PLN03226 311 EFKAYQKQVKANAAALANRLMSKGYKLVTGGTDNHLVLWDLRPLGLTG-------SRVEKVLDLAHITLNKNAVPGDSSA 383 (475)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhCCCEEEcCCCCCCEEEEEccCCCCCH-------HHHHHHHHHCCCEECCCCCCCCccc
Confidence 2456688899999999999999999887642 23455677632 2221 234555678899987654222 1
Q ss_pred CCCCeEEEEEe-----cCCHHHHHHHHHHHHHHHHHH
Q 044773 220 TEPGWFRVCFA-----NMSEDTLKLSMQRLKAFVDSI 251 (289)
Q Consensus 220 ~~~~~~Ris~~-----~~~~e~l~~~l~~l~~~l~~~ 251 (289)
..+..+|++.+ ..++++++++.+.|.++++..
T Consensus 384 ~~~~giRiGt~~lt~~g~~~~d~~~ia~~i~~~~~~~ 420 (475)
T PLN03226 384 LVPGGVRIGTPAMTSRGLVEKDFEKVAEFLHRAVTIA 420 (475)
T ss_pred CCCCCcccCcHHHHHCCCCHHHHHHHHHHHHHHHHHh
Confidence 22456888442 258899999999999998854
No 297
>TIGR00699 GABAtrns_euk 4-aminobutyrate aminotransferase, eukaryotic type. Alternate names include GABA transaminase, gamma-amino-N-butyrate transaminase, and beta-alanine--oxoglutarate aminotransferase.
Probab=99.42 E-value=6.1e-12 Score=116.32 Aligned_cols=210 Identities=15% Similarity=0.144 Sum_probs=122.3
Q ss_pred hHHHhhhC-CCccEEEEeCCCCCCccCC-CHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCC
Q 044773 2 YQLAQKRH-LKVKGVLVTNPSNPLGTTM-SRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTE 79 (289)
Q Consensus 2 l~~~~~~~-~~~~~i~l~~p~NPtG~~~-~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d 79 (289)
+++++..+ .++-+|++.....-.|... +.+.+++|.++|+++|+++|+||++.+++.+|..+. .+..
T Consensus 241 l~~~l~~~~~~iAAvI~EPv~g~~G~~~~~~~yl~~lr~lc~~~g~lLI~DEV~tGfGrtG~~fa--~e~~--------- 309 (464)
T TIGR00699 241 VEDLIKKWHKPVAAIIVEPIQSEGGDNHASPDFFRKLRDITKKHNVAFIVDEVQTGVGATGKFWA--HEHW--------- 309 (464)
T ss_pred HHHHHHhcCCcEEEEEEeCCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeeeeeCCCCCcchhH--HHhc---------
Confidence 35556544 3455655543365567766 788999999999999999999999998766554321 1111
Q ss_pred CCCce--EEEecCccccCCCCceEEEEEecCHHHHH--HHHhccccCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHH
Q 044773 80 VWNRV--HIVYSLSKDLGLPGFRVGAIYSNDDTVVA--AATKMSSFGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQ 155 (289)
Q Consensus 80 ~~~~~--i~i~s~sK~~g~~G~r~G~i~~~~~~~~~--~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~ 155 (289)
+.. .-+.+++|.+|..| +++.+ +.+.. ...... .+..|++...++.+.|+...- ....++.++
T Consensus 310 --gv~~~PDi~t~gK~lg~gG----~~~~~-~~~~~~~~~~~~~-T~~gnp~~~aaa~a~L~~l~~-----~~l~~~~~~ 376 (464)
T TIGR00699 310 --NLDDPPDMVTFSKKFQTAG----YFFHD-PAFRPNKPYRQFN-TWMGDPSRALILREIIQEIKR-----KDLLENVAH 376 (464)
T ss_pred --CCCCCCCEEEehhhhccCC----ccccc-hhccCCCCccccc-CCCCCHHHHHHHHHHHHHHHh-----cCHHHHHHH
Confidence 111 33577899996344 44442 22211 011222 233677777766655543211 122333444
Q ss_pred HHHHHHHHHHhc----CCce--ec-CCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEE
Q 044773 156 RHRKLVSGLEKA----GISC--LK-SNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVC 228 (289)
Q Consensus 156 ~~~~l~~~l~~~----g~~~--~~-~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ris 228 (289)
..+++.+.|+++ +..+ .. ..-|+++-++++.. .....+...++ +.||.+.+. +...+||.
T Consensus 377 ~g~~l~~~L~~l~~~~~~~i~~vRg~G~Glm~gie~~~~------~~~~~i~~~~~-~~Gvl~~~~------g~~~ir~~ 443 (464)
T TIGR00699 377 VGDYLYTGLEDLQKKYPEFIQNLRGKGRGTFIAWDTPDE------AKRDKLLKKAR-NNGVNIGGC------GVKAIRLR 443 (464)
T ss_pred HHHHHHHHHHHHHHhCCCceeeecccCeEEEEEEecCCH------HHHHHHHHHHH-HCCcEEecC------CCCeEEEe
Confidence 444444444433 2111 11 13366666776432 11245677766 569999763 23679999
Q ss_pred Eec-CCHHHHHHHHHHHHHHH
Q 044773 229 FAN-MSEDTLKLSMQRLKAFV 248 (289)
Q Consensus 229 ~~~-~~~e~l~~~l~~l~~~l 248 (289)
++. +++++++.++++|.+++
T Consensus 444 Ppl~it~~eid~~~~~l~~~~ 464 (464)
T TIGR00699 444 PMLVFQKHHADIFLEIISKII 464 (464)
T ss_pred CCCCCCHHHHHHHHHHHHHhC
Confidence 954 79999999999998753
No 298
>PRK05994 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=99.41 E-value=5.1e-11 Score=109.78 Aligned_cols=77 Identities=23% Similarity=0.320 Sum_probs=61.1
Q ss_pred CCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEec
Q 044773 10 LKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVYS 89 (289)
Q Consensus 10 ~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~s 89 (289)
+++++|++++|+||+|.+++ +++|.++|+++|+++|+|++|... + ...++ ..+-++++.|
T Consensus 147 ~~tklV~vesp~NptG~v~d---l~~I~~la~~~gi~livD~a~a~~-~---~~~pl-------------~~gaDivv~S 206 (427)
T PRK05994 147 PRTKAIFIESIANPGGTVTD---IAAIAEVAHRAGLPLIVDNTLASP-Y---LIRPI-------------EHGADIVVHS 206 (427)
T ss_pred cCCeEEEEECCCCCCCeecC---HHHHHHHHHHcCCEEEEECCcccc-c---cCCcc-------------ccCCcEEEEc
Confidence 57999999999999999998 899999999999999999999742 1 11111 1245588999
Q ss_pred CccccCCCCceEEEEEe
Q 044773 90 LSKDLGLPGFRVGAIYS 106 (289)
Q Consensus 90 ~sK~~g~~G~r~G~i~~ 106 (289)
++|.+|.+|-.+|.+++
T Consensus 207 ~tK~lgg~~~~~gG~v~ 223 (427)
T PRK05994 207 LTKFLGGHGNSMGGIIV 223 (427)
T ss_pred CccccCCCCCcEEEEEE
Confidence 99999867766776655
No 299
>PRK13237 tyrosine phenol-lyase; Provisional
Probab=99.40 E-value=1.4e-10 Score=105.61 Aligned_cols=238 Identities=14% Similarity=0.128 Sum_probs=159.3
Q ss_pred hHHHhhhC--CCccEEEEeCCCCCC-ccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCcc-------CCCCccChhhhhh
Q 044773 2 YQLAQKRH--LKVKGVLVTNPSNPL-GTTMSRNELNLLVNFITEKNIHLISDEIYSGTVF-------SSPGFVSIMEILK 71 (289)
Q Consensus 2 l~~~~~~~--~~~~~i~l~~p~NPt-G~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~-------~~~~~~~~~~~~~ 71 (289)
++++++.. ++++++.+.+++|.. |+.+|.++++++.++|+++|+.||+|.++..-.. .+....++.++..
T Consensus 166 Le~~I~~~~~~~~~lV~a~itvn~~GGqpvs~~~m~~I~elA~~~Gl~Vi~DaAra~gna~fI~~re~~y~~~~i~ei~~ 245 (460)
T PRK13237 166 LQALIDEVGAENIAYICLAVTVNLAGGQPVSMANMRAVRELCDKHGIKVFFDATRCVENAYFIKEREEGYQDKSIKEIVH 245 (460)
T ss_pred HHHHhccccCCccCceEEEEecccCCCeeCCHHhHHHHHHHHHHcCCEEEEECcchhcChhhhcccccccCCCcHhHHhh
Confidence 45555432 345678888888887 7999999999999999999999999999973211 1233345555444
Q ss_pred ccccccCCCCCceEEEecCccccCCC-CceEEEEEecCHHHHHHHHhcc-------ccCCCChHHHHHHHHHhCCchHHH
Q 044773 72 DRNCENTEVWNRVHIVYSLSKDLGLP-GFRVGAIYSNDDTVVAAATKMS-------SFGLVSSQTQYLLSALLSDKKFAQ 143 (289)
Q Consensus 72 ~~~~~~~d~~~~~i~i~s~sK~~g~~-G~r~G~i~~~~~~~~~~~~~~~-------~~~~~~~~~q~~~~~~l~~~~~~~ 143 (289)
++ -.--+....|++|.++.+ | |+++++++.+.+.++... +++..+.-...+++..+.+... .
T Consensus 246 e~------~s~aD~~t~S~~K~~~~~~G---G~i~t~D~eL~~~~r~~~~~~eG~~tygg~~grd~~alAvgl~E~~~-~ 315 (460)
T PRK13237 246 EM------FSYADGCTMSGKKDCLVNIG---GFLAMNDEELFDEAKELVVVYEGMPSYGGMAGRDMEAMAIGIEESVQ-Y 315 (460)
T ss_pred hc------cCcCcEEEEeCCCCCCCCCc---eEEEECCHHHHHHHHHhccccCCCcCCCChhhhHHHHHHhHHHhhch-H
Confidence 32 123457788899999766 6 999999998888777552 1222222344455555554322 3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCceecCCceEEEEEecCccccC--CChhhHHHHHHHHHHhcCeEEe-CCCC-CCC
Q 044773 144 NYISENKKRLKQRHRKLVSGLEKAGISCLKSNAGLFCWVDMRHLLSS--NTFEAEMELWKKIVYDVKLNIS-PGSS-CHC 219 (289)
Q Consensus 144 ~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~g~~~~i~~~~~~~~--~~~~~~~~~~~~ll~~~gi~v~-pg~~-f~~ 219 (289)
+++..+. .+.++|.+.|.+.|+.+..|.||.-++++....... ........++..|-.+.||-.. -|+. ++-
T Consensus 316 ~y~~~ri----~~~~~l~~~L~~~Gvpv~~p~ggH~v~vda~~~lph~~~~~~p~~al~~~ly~~~GiR~~e~g~~~~~~ 391 (460)
T PRK13237 316 EYIEHRV----GQVRYLGEKLLAAGVPIVEPVGGHAVFLDARRFLPHLPQDQFPAQALAAELYIESGVRSMERGIVSAGR 391 (460)
T ss_pred HHHHHHH----HHHHHHHHHHHHCCCceecCCCceEEEEEhHHhCCCCCcccChHHHHHHHHHHHhCcCeEeecceeccc
Confidence 3333333 345778999999999999999998888886653221 1224445677888778899743 2222 221
Q ss_pred CC---------CCeEEEEEec--CCHHHHHHHHHHHHHHHHHHHH
Q 044773 220 TE---------PGWFRVCFAN--MSEDTLKLSMQRLKAFVDSITT 253 (289)
Q Consensus 220 ~~---------~~~~Ris~~~--~~~e~l~~~l~~l~~~l~~~~~ 253 (289)
.+ -..+|+++.. -|.+.++-..+++..+.+....
T Consensus 392 ~~~~~~~~~~~~el~rlaiprr~yt~~h~~~v~~~~~~~~~~~~~ 436 (460)
T PRK13237 392 DPKTGENHYPKLELVRLTIPRRVYTYAHMDVVADSVIKLYKHRED 436 (460)
T ss_pred CCCCCccCCCccceeeeccccccccHHHHHHHHHHHHHHHHhHhh
Confidence 11 1579999954 4889999999999988877654
No 300
>PRK04366 glycine dehydrogenase subunit 2; Validated
Probab=99.40 E-value=6.5e-11 Score=110.74 Aligned_cols=218 Identities=11% Similarity=0.078 Sum_probs=129.4
Q ss_pred CCCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEe
Q 044773 9 HLKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVY 88 (289)
Q Consensus 9 ~~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~ 88 (289)
.+++++|++++|| |||.. ..++++|+++|+++|+++++|.++..- ..+. .+.. ..+.+++++
T Consensus 206 ~~~t~~V~v~~Pn-~tG~~--~~dl~eI~~~a~~~gal~iVD~a~~~~-~~g~--~~~~------------~~GaD~~~~ 267 (481)
T PRK04366 206 GEDTAALMLTNPN-TLGLF--ERNILEIAEIVHEAGGLLYYDGANLNA-ILGK--ARPG------------DMGFDVVHL 267 (481)
T ss_pred ccCCeEEEEeCCC-Ccccc--chHHHHHHHHHHHcCCEEEEEecChhh-hccc--CCcc------------ccCCCEEEE
Confidence 3578999999998 99964 457999999999999999999998521 1121 1111 235679999
Q ss_pred cCccccCCC----CceEEEEEecCHHHHHHHH------hcccc--------------CCC-ChHHHHHHHHHhCCchHHH
Q 044773 89 SLSKDLGLP----GFRVGAIYSNDDTVVAAAT------KMSSF--------------GLV-SSQTQYLLSALLSDKKFAQ 143 (289)
Q Consensus 89 s~sK~~g~~----G~r~G~i~~~~~~~~~~~~------~~~~~--------------~~~-~~~~q~~~~~~l~~~~~~~ 143 (289)
+.+|.+|.| |-.+|++.++++.. +.+. ....+ .+. +.+...++..++.... .
T Consensus 268 ~~hK~l~~P~g~Ggp~~G~l~~~~~~~-~~lp~~~v~~~g~~~~l~~~r~~~i~r~~a~t~~~l~~~~a~~~l~~~G--~ 344 (481)
T PRK04366 268 NLHKTFSTPHGGGGPGSGPVGVKEELA-PFLPVPVVEKDGDRYRLDYDRPKSIGRVRAFYGNFGVLVRAYAYIRSLG--A 344 (481)
T ss_pred echhhcCCCCCCCCCCeeeeeehhhhH-hhCCCCeeeccCCceeecccccccCCCcccccCchHHHHHHHHHHHHHH--H
Confidence 999998744 45578888865433 2221 00000 001 1112222222222211 2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCceecCCceEE-EEEecCc-cccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCCC
Q 044773 144 NYISENKKRLKQRHRKLVSGLEKAGISCLKSNAGLF-CWVDMRH-LLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTE 221 (289)
Q Consensus 144 ~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~g~~-~~i~~~~-~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~ 221 (289)
+-+++..++..++.+++.+.|.+. +.+......+. ..++.+. .... .+..++.+.|. ++||.+. +..+....
T Consensus 345 ~Gl~~~a~~~~~~a~~l~~~L~~~-~~~~~~~~~~~~~~~~~~~~~~~g---~~~~~v~~~L~-~~Gi~~~-~~~~p~~~ 418 (481)
T PRK04366 345 EGLREVSEDAVLNANYLKARLKDI-YDLPYDRPCMHEFVLSGKKLKETG---VRTLDIAKRLL-DYGFHPP-TIYFPLIV 418 (481)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHhh-CcccCCCCeeEEEEEECccccccC---CCHHHHHHHHH-HCCccCC-cccccccc
Confidence 335566667777788899999875 33221111111 2233321 1111 12345777776 6698865 22221123
Q ss_pred CCeEEEEEec-CCHHHHHHHHHHHHHHHHHHHH
Q 044773 222 PGWFRVCFAN-MSEDTLKLSMQRLKAFVDSITT 253 (289)
Q Consensus 222 ~~~~Ris~~~-~~~e~l~~~l~~l~~~l~~~~~ 253 (289)
.+.+|+++.. ++.+|++.+++.|+++.++...
T Consensus 419 ~~~l~is~~e~~t~edid~l~~~l~~i~~~~~~ 451 (481)
T PRK04366 419 PEALMIEPTETESKETLDAFIAAMKQIAEEAKE 451 (481)
T ss_pred CCeEEEcccCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 5689999954 7999999999999999877654
No 301
>KOG1357 consensus Serine palmitoyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.40 E-value=3.2e-12 Score=113.19 Aligned_cols=206 Identities=15% Similarity=0.121 Sum_probs=141.0
Q ss_pred CCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEecCccccCCCCce
Q 044773 21 SNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVYSLSKDLGLPGFR 100 (289)
Q Consensus 21 ~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~s~sK~~g~~G~r 100 (289)
...-|.+.. +.++++++++|.++++.||+|+.... |.......++.. .|..+.++.+|+|+|++|..|
T Consensus 286 ysmEg~iv~---Lp~vvalkkkykayl~lDEAHSiGA~-g~tGrgvce~~g------~d~~dvDImMGtftKSfga~G-- 353 (519)
T KOG1357|consen 286 YSMEGTIVD---LPEVVALKKKYKAYLYLDEAHSIGAM-GATGRGVCEYFG------VDPEDVDIMMGTFTKSFGAAG-- 353 (519)
T ss_pred eeccCeecc---cHHHHHhhccccEEEEeecccccccc-CCCCcceeeccC------CCchhheeecceehhhccccc--
Confidence 445677777 99999999999999999999996533 343445555433 368889999999999999899
Q ss_pred EEEEEecCHHHHHHHHhcccc-----CCCChHHHHHHHHHhC-CchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceecC
Q 044773 101 VGAIYSNDDTVVAAATKMSSF-----GLVSSQTQYLLSALLS-DKKFAQNYISENKKRLKQRHRKLVSGLEKAGISCLKS 174 (289)
Q Consensus 101 ~G~i~~~~~~~~~~~~~~~~~-----~~~~~~~q~~~~~~l~-~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~ 174 (289)
||+.++ +.+.+.+...... ..++++.|+.+..+-- .+.--.+..++..+++.+++.+++..++..|+-+.+.
T Consensus 354 -Gyiags-k~lid~lrt~s~~~~yat~~sppvaqq~~ssl~~i~G~dgt~~g~~k~~~l~~ns~yfr~~l~~~gfivyG~ 431 (519)
T KOG1357|consen 354 -GYIAGS-KELIDYLRTPSPSALYATSLSPPVAQQILTSVKHIMGEDGTNRGRQKIERLAENSRYFRWELQKMGFIVYGN 431 (519)
T ss_pred -ceecCc-HHHHhhhccCCCceeecccCChHHHHHHHHHHHhhcCCCcccHHHHHHHHHHhhhHHHHHhhhcCcEEEecC
Confidence 999995 5566655543221 2244566665544422 1111155678888999999999999999999988887
Q ss_pred CceEEEEE--ecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCC-CCCCCeEEEEEec-CCHHHHHHHHHHHHHHHH
Q 044773 175 NAGLFCWV--DMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCH-CTEPGWFRVCFAN-MSEDTLKLSMQRLKAFVD 249 (289)
Q Consensus 175 ~~g~~~~i--~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~-~~~~~~~Ris~~~-~~~e~l~~~l~~l~~~l~ 249 (289)
+.+..+.+ ..+.... .+.+.|+ +.+|.++.+.+.. +...+..|++.+. ++.|+++.+++.+.+.=+
T Consensus 432 ~dSpVvplll~~~~k~~--------~f~r~~l-~~nigvVvvgfPatpl~e~r~R~c~Sa~ht~e~ld~~l~~i~~~g~ 501 (519)
T KOG1357|consen 432 NDSPVVPLLLYGPAKIV--------AFSREML-ERNIGVVVVGFPATPLLESRARFCLSASHTKEDLDRALEVIDRVGD 501 (519)
T ss_pred CCCCcceeeecCccccc--------HHHHHHH-hcCceEEEEeCCCchHHHhHHHhhhcccccHHHHHHHHHHHhhhch
Confidence 77644322 2222221 3666777 4477776443322 2335778999954 799999999988876543
No 302
>PLN02974 adenosylmethionine-8-amino-7-oxononanoate transaminase
Probab=99.37 E-value=1.4e-10 Score=113.63 Aligned_cols=215 Identities=11% Similarity=0.020 Sum_probs=130.4
Q ss_pred CccEEEEeCC-CCCCccCC-CHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEe
Q 044773 11 KVKGVLVTNP-SNPLGTTM-SRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVY 88 (289)
Q Consensus 11 ~~~~i~l~~p-~NPtG~~~-~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~ 88 (289)
++-++++... +.-.|..+ +++.+++|.++|++||+++|.||++.+++..|..+.. + ..+...-|.
T Consensus 584 ~iAAvI~EPviqGaGGmi~~~~~yl~~lr~lc~~~gilLI~DEV~TGfGRtG~~fa~--e-----------~~gv~PDIi 650 (817)
T PLN02974 584 HIAALIIEPVLHGAGGMLLIDPLFQRALVQVCRSRKIPVIFDEVFTGLWRLGVESAW--E-----------LLGCKPDIA 650 (817)
T ss_pred CEEEEEEeccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeecccCCCcccchhhH--H-----------hcCCCCCEE
Confidence 4555454432 56667765 6889999999999999999999999999777765422 1 123334577
Q ss_pred cCccccCCCC-ceEEEEEecCHHHHHHHHh--------ccccCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHH-
Q 044773 89 SLSKDLGLPG-FRVGAIYSNDDTVVAAATK--------MSSFGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHR- 158 (289)
Q Consensus 89 s~sK~~g~~G-~r~G~i~~~~~~~~~~~~~--------~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~- 158 (289)
+++|.++ +| +++|.++++ +.+.+.+.. ..+.+..|++...++.+.|+...- .+......+..++..+
T Consensus 651 ~~gKgLt-gG~~Plaa~l~~-~~I~~~f~~~~~~~~~~hg~Ty~gnpl~cAaala~L~~~~~-~~~~~~l~~~~~~l~~~ 727 (817)
T PLN02974 651 CYAKLLT-GGLVPLAATLAT-EEVFEAFRGPSKLDALLHGHSYTAHPMGCAAAAKALQWYKD-PSTNPNLIPPGSRLREL 727 (817)
T ss_pred eeccccc-CCCCccEEEEEc-HHHHHhhccccccCCcccCCCCCcCHHHHHHHHHHHHHHHc-ccHHHHHHHHHHHHHHH
Confidence 8999998 88 799999995 444544421 112334788888877666653221 1111222222222222
Q ss_pred ---HHHHHHHhcCCceecCCceEEEEEecCccccCCCh--hhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEEe-cC
Q 044773 159 ---KLVSGLEKAGISCLKSNAGLFCWVDMRHLLSSNTF--EAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFA-NM 232 (289)
Q Consensus 159 ---~l~~~l~~~g~~~~~~~~g~~~~i~~~~~~~~~~~--~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ris~~-~~ 232 (289)
.+.+.+.++........-|.++.+++.+......+ .-...+...++.+.||.++|.. +.+|+.+. .+
T Consensus 728 l~~~l~~~l~~~p~V~~VRg~Gl~~~iel~~~~~~~~~~~~~a~~v~~~~~~~~Gl~~r~~G-------nvi~l~pP~~i 800 (817)
T PLN02974 728 WDEELVRAISSLPNVERVVSLGTVLALELDAEGSGSGYSSLYARSVVRRLRREDGIYARPLG-------NVVYLMCGPTT 800 (817)
T ss_pred HHHHHHHHHhhCCCeeEEEeeeeEEEEEEecCCcccccchHHHHHHHHHHHHhCCEEEEecC-------CEEEEeCCCCC
Confidence 33334444322111222356666777542211111 1123455555537799998741 46887664 37
Q ss_pred CHHHHHHHHHHHHHHH
Q 044773 233 SEDTLKLSMQRLKAFV 248 (289)
Q Consensus 233 ~~e~l~~~l~~l~~~l 248 (289)
+++++++++++|.+.+
T Consensus 801 ~~e~l~~~~~~l~~~~ 816 (817)
T PLN02974 801 SPETCTRLLRKVYRRL 816 (817)
T ss_pred CHHHHHHHHHHHHHHh
Confidence 9999999999998765
No 303
>PRK04013 argD acetylornithine/acetyl-lysine aminotransferase; Provisional
Probab=99.37 E-value=2.8e-11 Score=109.01 Aligned_cols=199 Identities=12% Similarity=0.113 Sum_probs=124.4
Q ss_pred CCccEEEEeCCCCCCcc-CCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEe
Q 044773 10 LKVKGVLVTNPSNPLGT-TMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVY 88 (289)
Q Consensus 10 ~~~~~i~l~~p~NPtG~-~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~ 88 (289)
+++.+|++...+...|. ..+.+.+++|.++|+++|+++|+||++.++ ..|..+.. . . .+....+.
T Consensus 161 ~~~aAvivEpi~g~gG~~~~~~~yl~~lr~lc~~~gillI~DEv~tG~-RtG~~~a~-~-~-----------~gv~PDiv 226 (364)
T PRK04013 161 KETAAVIFEPIQGEGGIVPAKEEFVKTLRDLTEDVGALLIADEVQSGL-RTGKFLAI-E-H-----------YKVEPDIV 226 (364)
T ss_pred CCcEEEEEcCCcCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhcC-CCCchhHH-H-h-----------cCCCCCEE
Confidence 35777666644554555 457789999999999999999999999987 55543221 1 1 12223366
Q ss_pred cCccccCCCCceEEEEEecCHHHHHHHHhccccCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 044773 89 SLSKDLGLPGFRVGAIYSNDDTVVAAATKMSSFGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEKAG 168 (289)
Q Consensus 89 s~sK~~g~~G~r~G~i~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g 168 (289)
+++|.+| .|+++|.++.+.+. .. ..... .+..|++...++.+.|+...- ++..+..++. +. .+.. .
T Consensus 227 ~~gK~lg-gG~P~~a~~~~~~~-~~-~~~~~-T~~gnp~~~aaa~a~l~~i~~-~~l~~~~~~~-------l~-~l~~-~ 292 (364)
T PRK04013 227 TMGKGIG-NGVPVSLTLTNFDV-ER-GKHGS-TFGGNPLACKAVAVTLRILRR-ERLVEKAGEK-------FI-EIKG-E 292 (364)
T ss_pred Eeccccc-CCceeEEEEecccc-cC-CCcCC-CCCcCHHHHHHHHHHHHHHHh-ccHHHHHHHH-------HH-Hhcc-C
Confidence 7799998 78999999986543 11 11222 333778887777776664321 1112222221 11 2211 1
Q ss_pred CceecCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEEec-CCHHHHHHHHHHHHHH
Q 044773 169 ISCLKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFAN-MSEDTLKLSMQRLKAF 247 (289)
Q Consensus 169 ~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ris~~~-~~~e~l~~~l~~l~~~ 247 (289)
+-.....-|.++-+++..+ ...+...++ ++|+.+.+. +...+||.++. .+++++++++++|.++
T Consensus 293 ~v~~vRG~Gl~~gve~~~~--------~~~i~~~~~-~~Gll~~~~------g~~vlr~~Ppl~it~~~i~~~~~~l~~~ 357 (364)
T PRK04013 293 RVVTTRGRGLMIGIVLKKP--------VGKYVEELQ-NRGYLVHTA------GQRVIRLLPPLIISKDTMEEAKSAIEGV 357 (364)
T ss_pred cceeeeeCcEEEEEEeCCc--------HHHHHHHHH-hCCcEEeeC------CCCEEEEeCCcccCHHHHHHHHHHHHHH
Confidence 1111122256777777532 134666665 679998763 23679999964 6999999999999999
Q ss_pred HHHH
Q 044773 248 VDSI 251 (289)
Q Consensus 248 l~~~ 251 (289)
+.+.
T Consensus 358 l~~~ 361 (364)
T PRK04013 358 INDI 361 (364)
T ss_pred HHHH
Confidence 8753
No 304
>TIGR03251 LAT_fam L-lysine 6-transaminase. Characterized members of this protein family are L-lysine 6-transaminase, also called lysine epsilon-aminotransferase (LAT). The immediate product of the reaction of this enzyme on lysine, 2-aminoadipate 6-semialdehyde, becomes 1-piperideine 6-carboxylate, or P6C. This product may be converted subsequently to pipecolate or alpha-aminoadipate, lysine catabolites that may be precursors of certain seconary metabolites.
Probab=99.37 E-value=4.8e-11 Score=110.21 Aligned_cols=205 Identities=10% Similarity=0.094 Sum_probs=114.7
Q ss_pred CCccEEEEeCCCCCCccC-CCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEe
Q 044773 10 LKVKGVLVTNPSNPLGTT-MSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVY 88 (289)
Q Consensus 10 ~~~~~i~l~~p~NPtG~~-~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~ 88 (289)
.++.++++...+.-.|.. .+.+.+++|.++|+++|+++|+||++++++.+|..+. .+.. +...-+-
T Consensus 217 ~~iAavivEPv~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~tG~GrtG~~~a--~~~~-----------gv~PDi~ 283 (431)
T TIGR03251 217 HDIACFIAEPIQGEGGDNHFRPEFLRAMRALCDEHDALLIFDEVQTGVGLTGTAWA--YQQL-----------GVQPDIV 283 (431)
T ss_pred CcEEEEEEeccccCCCCcCCCHHHHHHHHHHHHHcCCEEEEecchhccCccchHHH--HHhc-----------CCCCCEE
Confidence 356665555335556655 5788999999999999999999999998766554321 1111 1112234
Q ss_pred cCccccCCCCceEEEEEecCHH--HHH-HHH---hccccCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHH
Q 044773 89 SLSKDLGLPGFRVGAIYSNDDT--VVA-AAT---KMSSFGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVS 162 (289)
Q Consensus 89 s~sK~~g~~G~r~G~i~~~~~~--~~~-~~~---~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~ 162 (289)
+++|.+. .+ |++.. ++. +.. ... ...+.+..|++...++.+.|+...- ....+..++.-+...+.|.+
T Consensus 284 ~~gK~~~-~~---g~~~~-~~i~~~~~~~~~~~~~~~~T~~gnpl~~aaa~a~L~~l~~-~~l~~~~~~~g~~l~~~L~~ 357 (431)
T TIGR03251 284 AFGKKTQ-VC---GIMAG-RRVDEVADNVFAVPSRLNSTWGGNLVDMVRATRILEIIEE-ERLVDNARVQGAHLLARLHE 357 (431)
T ss_pred EecccCc-cc---eEEec-chHHHhhhhcccCccccCCCCCCCHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHHHH
Confidence 5789873 32 55554 321 111 111 1122233677777766666653211 11122222222222333333
Q ss_pred HHHhcC-CceecCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEEec-CCHHHHHHH
Q 044773 163 GLEKAG-ISCLKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFAN-MSEDTLKLS 240 (289)
Q Consensus 163 ~l~~~g-~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ris~~~-~~~e~l~~~ 240 (289)
...+.+ +......-|.++.+.++.. .....+...++ ++||.+.|.. ...+||+++. ++++|++++
T Consensus 358 l~~~~~~~i~~vrg~G~~~~i~~~~~------~~~~~~~~~l~-~~Gvl~~~~g------~~~lr~~P~l~~t~~eid~~ 424 (431)
T TIGR03251 358 LAAEFPHLVSNPRGRGLMCAFDLPST------ADRDEVIRQLY-REGVLLLGCG------ERSIRFRPPLTVTREEIDAA 424 (431)
T ss_pred HHHhCccceecccccceeEEEEeCCH------HHHHHHHHHHH-hCCeEEecCC------CCeEEEECCccCCHHHHHHH
Confidence 223332 3222222256666777532 11235777776 6799997742 2468998854 799999999
Q ss_pred HHHHHH
Q 044773 241 MQRLKA 246 (289)
Q Consensus 241 l~~l~~ 246 (289)
++++.+
T Consensus 425 l~~l~~ 430 (431)
T TIGR03251 425 IDAIRR 430 (431)
T ss_pred HHHHHh
Confidence 999865
No 305
>TIGR01366 serC_3 phosphoserine aminotransferase, putative. This model represents a putative variant form of the serine biosynthesis enzyme phosphoserine aminotransferase, as found in Mycobacterium tuberculosis and related high-GC Gram-positive bacteria.
Probab=99.36 E-value=5.3e-11 Score=107.45 Aligned_cols=205 Identities=10% Similarity=0.033 Sum_probs=129.8
Q ss_pred CCCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEe
Q 044773 9 HLKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVY 88 (289)
Q Consensus 9 ~~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~ 88 (289)
.+++++|.+++..|.||.+.+ +++| ++++|+++|+|.+.+- +....++.+ .++++.
T Consensus 126 ~~~~~lV~~~h~et~tG~~~p---i~~I---~~~~g~~~iVDavqs~----g~~~idv~~--------------~D~~~~ 181 (361)
T TIGR01366 126 DPGVDVIAWAHNETSTGVAVP---VRRP---EGSDDALVVIDATSGA----GGLPVDIAE--------------TDVYYF 181 (361)
T ss_pred CCCCCEEEEcccCCccceecc---cccc---cccCCCeEEEEcCccc----cCCCCCHHH--------------CCEEEE
Confidence 357999999999999999999 5555 4789999999999983 343344332 347899
Q ss_pred cCccccCCCCceEEEEEecCHHHHHHHHh---------c-------------cccCCCChHHHHHHHHHhCCchHHHHH-
Q 044773 89 SLSKDLGLPGFRVGAIYSNDDTVVAAATK---------M-------------SSFGLVSSQTQYLLSALLSDKKFAQNY- 145 (289)
Q Consensus 89 s~sK~~g~~G~r~G~i~~~~~~~~~~~~~---------~-------------~~~~~~~~~~q~~~~~~l~~~~~~~~~- 145 (289)
|..|.+|.+|- ++.++.+++.+.+.... + ...++++.....++..+++. +.+.
T Consensus 182 s~~K~lg~~~G-l~~~~~s~~~~~~~~~~~~~~~~~p~~~d~~~~~~~~~~~~t~~tp~i~~i~~l~~al~~---l~~~g 257 (361)
T TIGR01366 182 APQKNFASDGG-LWLAIMSPAALERIEAIAASGRWVPEFLSLPTAVDNSLKNQTYNTPAIATLALLAEQIDW---MNGNG 257 (361)
T ss_pred EchhhcCCCCc-eEEEEECHHHHhhhhcccCCCCCCchhhhHHHHHhccccCCCCCCchHHHHHHHHHHHHH---HHHcc
Confidence 99999987752 55556655444322100 0 01121222222233444432 2222
Q ss_pred -HHHHHHHHHHHHHHHHHHHHhcC-CceecC-C---ceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCC
Q 044773 146 -ISENKKRLKQRHRKLVSGLEKAG-ISCLKS-N---AGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHC 219 (289)
Q Consensus 146 -~~~~~~~~~~~~~~l~~~l~~~g-~~~~~~-~---~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~ 219 (289)
++...+++++..+++++.+.+.+ ++.... . ......+.+++..+ ..++...| +++||.+.++. +.
T Consensus 258 g~e~~~~r~~~l~~~l~~~l~~~~~~~~~~~~~~~~s~~v~~v~~~~g~~------~~~v~~~L-~~~gI~i~~~~--~~ 328 (361)
T TIGR01366 258 GLDWAVARTADSSSRLYSWAQERPYATPFVTDPGKRSQVVGTIDFVDDID------AATVAKIL-RANGIVDTEPY--RK 328 (361)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhCCCcccCCCChhhcccceEEEECCCccC------HHHHHHHH-HHCCCeeccCc--cc
Confidence 45666888899999999999885 444321 1 11112233333222 23466666 56799997764 22
Q ss_pred CCCCeEEEEEec-CCHHHHHHHHHHHHHHHHH
Q 044773 220 TEPGWFRVCFAN-MSEDTLKLSMQRLKAFVDS 250 (289)
Q Consensus 220 ~~~~~~Ris~~~-~~~e~l~~~l~~l~~~l~~ 250 (289)
.....+||++.. ++.++++.++++|++++++
T Consensus 329 l~~~~vRis~~~~~t~~di~~l~~al~~~~~~ 360 (361)
T TIGR01366 329 LGRNQLRVAMFPAIDPDDVEALTECVDWVVER 360 (361)
T ss_pred cCCCcEEEEcCCCCCHHHHHHHHHHHHHHHhh
Confidence 235689999954 8999999999999998764
No 306
>COG2008 GLY1 Threonine aldolase [Amino acid transport and metabolism]
Probab=99.36 E-value=4.8e-11 Score=103.74 Aligned_cols=209 Identities=17% Similarity=0.154 Sum_probs=132.9
Q ss_pred hCCCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEE
Q 044773 8 RHLKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIV 87 (289)
Q Consensus 8 ~~~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i 87 (289)
.++++.++++.|++|-.|+++|.++|++|.++|+++|+.+..|-+--........ .+..++. ...+.+.
T Consensus 127 ~~~~~~~~~~e~~~te~GtVy~l~el~~i~~~~k~~~l~LHmDGAR~~nA~valg-~~~~~~~----------~~~D~v~ 195 (342)
T COG2008 127 HHAPTPLAVLENTATEGGTVYPLDELEAISAVCKEHGLPLHMDGARLANALVALG-VALKTIK----------SYVDSVS 195 (342)
T ss_pred ccCCCceEEEeeccCCCceecCHHHHHHHHHHHHHhCCceeechHHHHHHHHHcC-CCHHHHH----------hhCCEEE
Confidence 3456667777777667899999999999999999999999999996433222222 4555563 2455677
Q ss_pred ecCccccCCCCceEEEEEecCHHHHHHHHhc-cccCCCC---hHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHH
Q 044773 88 YSLSKDLGLPGFRVGAIYSNDDTVVAAATKM-SSFGLVS---SQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSG 163 (289)
Q Consensus 88 ~s~sK~~g~~G~r~G~i~~~~~~~~~~~~~~-~~~~~~~---~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~ 163 (289)
.++||..+.|+ |.|+.-+..++..+..+ ...+..- .+.-.....+|++.- ......+-.+..++|.+.
T Consensus 196 ~~~tK~g~~~~---gAiv~gn~~~~~~a~~~rK~~Ggl~~k~r~laA~~~~~l~~~~-----~~~~~~Han~mA~~La~~ 267 (342)
T COG2008 196 FCLTKGGGAPV---GAIVFGNRDFAKRARRWRKRAGGLMRKARFLAAQGLYALEDDV-----WRLAADHANAMAARLAEG 267 (342)
T ss_pred EecccCCccee---eeEEEcCHHHHHHHHHHHHHhcccHhhhhHHHHHHHHHHhccH-----HHHHHHHHHHHHHHHHHh
Confidence 78999988665 88887676665544332 2222211 122222333344432 233344555557889999
Q ss_pred HHhc-CCceecCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEEec-CCHHHHHHHH
Q 044773 164 LEKA-GISCLKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFAN-MSEDTLKLSM 241 (289)
Q Consensus 164 l~~~-g~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ris~~~-~~~e~l~~~l 241 (289)
+++. |+++..|.-...+++++++... +....... +...|+.+.++. ..+|+.+++ ++++++++++
T Consensus 268 ~~~~~G~~~~~~~~tN~vf~~l~~~~i-----~~l~~~~~-~~~~~~~~~~~~-------~~vRfvts~a~~~edv~~~~ 334 (342)
T COG2008 268 LEAKPGVKLAFPVETNMVFVRLPESAI-----EALRLAGA-LFYRGVLIGAHG-------EIVRFVTSWATSEEDVDELV 334 (342)
T ss_pred hhhcCCceeccCCcccEEEEECChHHH-----HHHHhhch-hheeeeeccCCC-------ceEEEEeeccCCHHHHHHHH
Confidence 9865 9998876555677788885311 11122222 223344444322 368999976 7999999999
Q ss_pred HHHHHHH
Q 044773 242 QRLKAFV 248 (289)
Q Consensus 242 ~~l~~~l 248 (289)
+.++.++
T Consensus 335 ~~~~~~~ 341 (342)
T COG2008 335 AAIKALL 341 (342)
T ss_pred HHHHHhh
Confidence 9888764
No 307
>TIGR03531 selenium_SpcS O-phosphoseryl-tRNA(Sec) selenium transferase. In the archaea and eukaryotes, the conversion of the mischarged serine to selenocysteine (Sec) on its tRNA is accomplished in two steps. This enzyme, O-phosphoseryl-tRNA(Sec) selenium transferase, acts second, after a phosphophorylation step catalyzed by a homolog of the bacterial SelA protein.
Probab=99.36 E-value=1.2e-10 Score=106.96 Aligned_cols=225 Identities=17% Similarity=0.136 Sum_probs=134.7
Q ss_pred hHHHhhhCC-CccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCC
Q 044773 2 YQLAQKRHL-KVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEV 80 (289)
Q Consensus 2 l~~~~~~~~-~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 80 (289)
+++++.... +..++++.+|+ ||.....+++++|.++|+++|+++|+|++|+.. . .......... .+.
T Consensus 194 Le~aIt~~~~kai~~Vv~Tp~--t~~~g~~ddL~eIa~la~k~gI~lIvDaAyg~~----~--~~~~~~~~~g----~~~ 261 (444)
T TIGR03531 194 IERAIEEIGPDNILCVLSTTS--CFAPRSPDDIEEIAKICANYDIPHIVNNAYGLQ----S--NKYMELINKA----IKV 261 (444)
T ss_pred HHHHHHhccCCCEEEEEEcCC--cCCCcchhCHHHHHHHHHHcCCEEEEECcCcCc----C--hhhhhhhhcc----ccc
Confidence 456665322 56777887775 444445566999999999999999999999842 1 1111111100 001
Q ss_pred CCceEEEecCccccCCCCceEEEEEecCHHHHHHHHhccccCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHH
Q 044773 81 WNRVHIVYSLSKDLGLPGFRVGAIYSNDDTVVAAATKMSSFGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKL 160 (289)
Q Consensus 81 ~~~~i~i~s~sK~~g~~G~r~G~i~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l 160 (289)
..-++++.|++|.+.++|. .|.++++++.+.+.+.........+++.+.+...++..+ .+.++++.+...++++++
T Consensus 262 Grad~vv~s~hK~l~~pg~-Gg~I~~~d~el~~~i~~~y~g~~~~s~~~~~~~~ll~~G---~~g~~~li~~~~~~a~~l 337 (444)
T TIGR03531 262 GRVDAVVSSTDKNFMVPVG-GAIIYSFDENFIQEISKSYPGRASASPSLDVLITLLSLG---SKGYLELLKERKEMYKYL 337 (444)
T ss_pred cCCCeEEEeCccCCCCCCC-EEEEEECCHHHHHHHHHhccCCCCChHHHHHHHHHHHhC---HHHHHHHHHHHHHHHHHH
Confidence 1125778899999987665 344447677776666554332324456777766666544 456777777888888888
Q ss_pred HHHHHhc----CCceecC-CceEEEEEecCccccCCChhhHHHHHHHHHHhcCeE----EeCCC----------CCCC--
Q 044773 161 VSGLEKA----GISCLKS-NAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLN----ISPGS----------SCHC-- 219 (289)
Q Consensus 161 ~~~l~~~----g~~~~~~-~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~----v~pg~----------~f~~-- 219 (289)
.+.|.++ |.++... ...+.+.+.+..... .+...+...| ...+|. |.||. +|+.
T Consensus 338 ~~~L~~l~~~~~~~~~~~~~n~is~~~~~~~~~~----~~~~~~g~~l-~~~~v~g~r~v~~~~~~~~~~~~~~~~~~~~ 412 (444)
T TIGR03531 338 KELLQKLAERHGERLLDTPENPISSAMTLSTLKG----KDPTMLGSML-YSRRVTGPRVVTNGDSKTVGGCEFKGYGSHT 412 (444)
T ss_pred HHHHHHHHHhhCcEeecCCCCceeEEEecccccc----cCHHHHHHHH-HhCCCCCceeecCCCceEECCEEeecccccc
Confidence 8888765 6666543 333344444443211 1123344444 344552 34555 2222
Q ss_pred --CCCCeEEEEEec-CCHHHHHHHHHHHHHH
Q 044773 220 --TEPGWFRVCFAN-MSEDTLKLSMQRLKAF 247 (289)
Q Consensus 220 --~~~~~~Ris~~~-~~~e~l~~~l~~l~~~ 247 (289)
.+-.|+-++.+- ++.+|++.++++|.++
T Consensus 413 ~~~~~~y~~~~~~~g~~~~~~~~~~~~l~~~ 443 (444)
T TIGR03531 413 SNYPCPYITAAAAIGMTKEDVDTFVSRLEKS 443 (444)
T ss_pred cCCCchhHHHHHHhCCcHHHHHHHHHHHhhc
Confidence 112466666643 7999999999999764
No 308
>TIGR02618 tyr_phenol_ly tyrosine phenol-lyase. This model describes a group of tyrosine phenol-lyase (4.1.99.2) (beta-tyrosinase), a pyridoxal-phosphate enzyme closely related to tryptophanase (4.1.99.1) (see model TIGR02617). Both belong to the beta-eliminating lyase family (pfam01212)
Probab=99.35 E-value=2.7e-10 Score=103.57 Aligned_cols=238 Identities=17% Similarity=0.163 Sum_probs=156.5
Q ss_pred hHHHhhhC--CCccEEEEeCCCCC-CccCCCHHHHHHHHHHHHHcCCEEEEecCCCC-Cc-c-----CCCCccChhhhhh
Q 044773 2 YQLAQKRH--LKVKGVLVTNPSNP-LGTTMSRNELNLLVNFITEKNIHLISDEIYSG-TV-F-----SSPGFVSIMEILK 71 (289)
Q Consensus 2 l~~~~~~~--~~~~~i~l~~p~NP-tG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~-~~-~-----~~~~~~~~~~~~~ 71 (289)
++++++.. +++++|.+++++|- .|+++|.++++++.++|+++|+.|++|.++.. .. | .+....++.++..
T Consensus 159 Le~aI~~~~~~~~~lV~~e~t~N~~GG~pvs~~~l~~I~elA~~~Gl~vi~DaAR~~gNA~~I~~re~g~~~~~i~ei~~ 238 (450)
T TIGR02618 159 LQKLIDEVGADKIPYICLAVTVNLAGGQPVSMANMREVRELCEAHGIKVFYDATRCVENAYFIKEREQGYEDKSIAEILK 238 (450)
T ss_pred HHHHhccccCcccCceEEEEecccCCCeeCCHHHHHHHHHHHHHcCCEEEEEccchhhChhhhhcccccccCCCHHHHHH
Confidence 45555532 24568889999874 58999999999999999999999999999974 11 1 1334456655554
Q ss_pred ccccccCCCCCceEEEecCccccCCC-CceEEEEEecCHHHHHHHHhcc-------ccCCCChHHHHHHHHHhCCchHHH
Q 044773 72 DRNCENTEVWNRVHIVYSLSKDLGLP-GFRVGAIYSNDDTVVAAATKMS-------SFGLVSSQTQYLLSALLSDKKFAQ 143 (289)
Q Consensus 72 ~~~~~~~d~~~~~i~i~s~sK~~g~~-G~r~G~i~~~~~~~~~~~~~~~-------~~~~~~~~~q~~~~~~l~~~~~~~ 143 (289)
++ ...-+.+..|..|..+.+ | |+++.+++.+.+..+... +++....-...+++..|.+.-. .
T Consensus 239 e~------~~~aD~~~~S~~Kd~~~~~G---G~l~~~d~~l~~k~r~~~~~~eG~~tyGgla~r~~~ala~gL~e~~~-~ 308 (450)
T TIGR02618 239 EM------MSYADGCTMSGKKDCLVNIG---GFLCMNDDEMFQSAKELVVVFEGMPSYGGLAGRDMEAMAIGIREAVD-Y 308 (450)
T ss_pred HH------hccCcEEEEeeccCCCCCCc---eEEEeCCHHHHHHHHHHhhhcCCccccCchhhhhHHHHHHHHHHhhh-H
Confidence 43 112335788999998877 7 888878888877766542 1222222334444444544311 1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCceecCCceEEEEEecCccccC--CChhhHHHHHHHHHHhcCeEEe-CCCC-CCC
Q 044773 144 NYISENKKRLKQRHRKLVSGLEKAGISCLKSNAGLFCWVDMRHLLSS--NTFEAEMELWKKIVYDVKLNIS-PGSS-CHC 219 (289)
Q Consensus 144 ~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~g~~~~i~~~~~~~~--~~~~~~~~~~~~ll~~~gi~v~-pg~~-f~~ 219 (289)
.+. ++-..+.++|.+.|.+.|+.+..|.+|..++++....... ........++..|-.+.||-.. -|+. ++-
T Consensus 309 ~y~----~~r~~~a~~La~~L~~~Gvpv~~p~ggh~V~vda~~~lph~~~~~~p~~al~~~ly~~~gir~~e~g~~~~~~ 384 (450)
T TIGR02618 309 EYI----EHRVKQVRYLGDKLKAAGVPIVEPVGGHAVFLDARRFLPHIPQDQFPAQSLAASIYVETGVRSMERGIVSAGR 384 (450)
T ss_pred HHH----HHHHHHHHHHHHHHHHCCCcccCCCCcceEEEEhHHhCCCCChhhChHHHHHHHHHHHhCccEEeecceeccc
Confidence 112 2222346788999998899998888888888987764221 1224455677888778899643 2332 121
Q ss_pred CC---------CCeEEEEEec--CCHHHHHHHHHHHHHHHHHHHH
Q 044773 220 TE---------PGWFRVCFAN--MSEDTLKLSMQRLKAFVDSITT 253 (289)
Q Consensus 220 ~~---------~~~~Ris~~~--~~~e~l~~~l~~l~~~l~~~~~ 253 (289)
++ -..+|+++.. -|.+.++-..+++..+.+....
T Consensus 385 ~~~~~~~~~~~~el~rlaiprr~yt~~h~~~v~~~~~~~~~~~~~ 429 (450)
T TIGR02618 385 NNVTGEHHRPKLELVRLTIPRRVYTYAHMDVVADGIIKLYKHRDD 429 (450)
T ss_pred CCCCCcccCCccceeeeccccccccHhHHHHHHHHHHHHHhhHhh
Confidence 11 1579999964 4889999999999998877654
No 309
>KOG1402 consensus Ornithine aminotransferase [Amino acid transport and metabolism]
Probab=99.35 E-value=5.7e-11 Score=101.57 Aligned_cols=214 Identities=16% Similarity=0.197 Sum_probs=139.7
Q ss_pred hHHHhhhCCCccEEEEeCC-CCCCccCCC-HHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccC-hhhhhhccccccC
Q 044773 2 YQLAQKRHLKVKGVLVTNP-SNPLGTTMS-RNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVS-IMEILKDRNCENT 78 (289)
Q Consensus 2 l~~~~~~~~~~~~i~l~~p-~NPtG~~~~-~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~-~~~~~~~~~~~~~ 78 (289)
++.+++. ++..+ ++..| +.-.|.+.| ...+++..++|++||+++|.||+++++..+|....- ...+.
T Consensus 199 le~~l~~-~~vaa-FivEPIQGEaGVvvP~~GYL~~vreLCtkynvl~I~DEvQTGl~RTGk~la~d~env~-------- 268 (427)
T KOG1402|consen 199 LEVALKS-PNVAA-FIVEPIQGEAGVVVPPPGYLKKVRELCTKYNVLLIADEVQTGLARTGKLLACDYENVR-------- 268 (427)
T ss_pred HHHHhcC-CCeeE-EEeeccccccceEeCCchhHHHHHHHHHhhcEEEEehhhhhcccccCcEEEeehhhcC--------
Confidence 5566665 46666 55567 877887765 559999999999999999999999999887764322 11111
Q ss_pred CCCCceEEEecCccccCCCCceEEEEEecCHHHHHHHH---hccccCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHH
Q 044773 79 EVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDTVVAAAT---KMSSFGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQ 155 (289)
Q Consensus 79 d~~~~~i~i~s~sK~~g~~G~r~G~i~~~~~~~~~~~~---~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~ 155 (289)
+| +--|.|+++..=.+++.+++++ .+...++ +.++++ .|++...++.++|+-.. + +++.+..+.
T Consensus 269 --PD----ivilgKalSGG~~Pvsavl~~~-~im~~~~pgeHgsTyg-gNpLg~~vaiAalevi~--e---ekL~era~~ 335 (427)
T KOG1402|consen 269 --PD----IVILGKALSGGVYPVSAVLADD-DIMLNIKPGEHGSTYG-GNPLGCAVAIAALEVIV--E---EKLVERAAK 335 (427)
T ss_pred --CC----eEEEeccccCCeeeeEEEEecH-HHHhccCCCccccccC-CChHHHHHHHHHHHHHH--H---HHHHHHHHH
Confidence 12 2226799973338999999954 4443343 344444 89999888888877533 2 333444455
Q ss_pred HHHHHHHHHHhcC--C----ceecCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEE
Q 044773 156 RHRKLVSGLEKAG--I----SCLKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCF 229 (289)
Q Consensus 156 ~~~~l~~~l~~~g--~----~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ris~ 229 (289)
.-..|+..|.++. + +..... |++..+.+... .....++++.+-.+ ++.|+.--|.. ..-+|+++
T Consensus 336 lG~~l~~~L~~l~~~~p~~v~~VRGr-Gl~~ai~i~~~--~~~~~~aw~~cl~l-k~~g~LAkptH------~~IiRfaP 405 (427)
T KOG1402|consen 336 LGEILRDQLNKLQKKFPHVVKEVRGR-GLLNAIVINPS--KTSGQDAWDVCLAL-KENGLLAKPTH------GNIIRFAP 405 (427)
T ss_pred HHHHHHHHHHhccccccchhheeecc-ceEEEEEeccc--cccchhHHHHHHcc-cccccccCCCC------CCeEEecC
Confidence 5566777777762 2 222233 45655554421 11224556666655 46677766533 45899999
Q ss_pred ec-CCHHHHHHHHHHHHHHH
Q 044773 230 AN-MSEDTLKLSMQRLKAFV 248 (289)
Q Consensus 230 ~~-~~~e~l~~~l~~l~~~l 248 (289)
.. ++++++++.++.+.+.+
T Consensus 406 PL~I~e~dl~eg~e~i~k~i 425 (427)
T KOG1402|consen 406 PLVISEEDLREGIEAIEKTI 425 (427)
T ss_pred CcccCHHHHHHHHHHHHHHh
Confidence 54 79999999999998765
No 310
>PRK08134 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=99.35 E-value=3.2e-10 Score=104.46 Aligned_cols=82 Identities=16% Similarity=0.203 Sum_probs=64.7
Q ss_pred HHHhhhCCCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCC
Q 044773 3 QLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWN 82 (289)
Q Consensus 3 ~~~~~~~~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 82 (289)
++++. +++|+|++++|+||+|.+.+ +++|.++|+++|+++|+|.+|..... ..++ ++ +
T Consensus 143 ~~~i~--~~TklV~~e~~~np~g~v~D---i~~I~~la~~~gi~livD~t~a~~~~----~~pl-~~------------G 200 (433)
T PRK08134 143 RAAIR--PNTRLLFGETLGNPGLEVLD---IPTVAAIAHEAGVPLLVDSTFTTPYL----LRPF-EH------------G 200 (433)
T ss_pred HHhcC--CCCeEEEEECCCcccCcccC---HHHHHHHHHHcCCEEEEECCCccccc----CCch-hc------------C
Confidence 44443 57999999999999999999 99999999999999999999974211 1121 22 4
Q ss_pred ceEEEecCccccCCCCceEEEEEe
Q 044773 83 RVHIVYSLSKDLGLPGFRVGAIYS 106 (289)
Q Consensus 83 ~~i~i~s~sK~~g~~G~r~G~i~~ 106 (289)
-++++.|.+|.+|.+|..+|.+++
T Consensus 201 aD~vv~S~tK~l~g~g~~~gG~v~ 224 (433)
T PRK08134 201 ADLVYHSATKFLGGHGTAIGGVLV 224 (433)
T ss_pred CCEEEeccccccCCCCCceEEEEE
Confidence 568999999999878877777765
No 311
>PRK03080 phosphoserine aminotransferase; Provisional
Probab=99.35 E-value=6.8e-11 Score=107.47 Aligned_cols=207 Identities=12% Similarity=0.035 Sum_probs=131.8
Q ss_pred ccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEecCc
Q 044773 12 VKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVYSLS 91 (289)
Q Consensus 12 ~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~s~s 91 (289)
+++|.+++.+|.||...+ +++|++ +++|+++++|.+++- |....++.+ .++++.|..
T Consensus 137 ~~~V~~~h~~t~tG~~~p---i~~I~~--~~~g~~~vVDa~qs~----G~~pidv~~--------------iD~~~~s~~ 193 (378)
T PRK03080 137 DRDVVFTWNGTTTGVRVP---VARWIG--ADREGLTICDATSAA----FALPLDWSK--------------LDVYTFSWQ 193 (378)
T ss_pred CCCEEEEecCCccceecc---chhhcc--ccCCCeEEEeccccc----ccCCCCHHH--------------CcEEEEehh
Confidence 466899999999999999 777777 788999999999983 333344332 348899999
Q ss_pred cccCC-CCceEEEEEecCHHHHHHHHhc------------------c---ccCCCChHH---HHHHHHHhCCchHHHHH-
Q 044773 92 KDLGL-PGFRVGAIYSNDDTVVAAATKM------------------S---SFGLVSSQT---QYLLSALLSDKKFAQNY- 145 (289)
Q Consensus 92 K~~g~-~G~r~G~i~~~~~~~~~~~~~~------------------~---~~~~~~~~~---q~~~~~~l~~~~~~~~~- 145 (289)
|.++. +| +|+++.+++.+....... . ..++.+++. ..++..+++. +.+.
T Consensus 194 K~l~~P~G--~g~l~v~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~tp~i~~i~~l~~al~~---l~~~g 268 (378)
T PRK03080 194 KVLGGEGG--HGMAILSPRAVERLESYTPARPIPKFFRLTKGGKAIENSFKGQTINTPSMLTVEDYLDQLDW---ANSIG 268 (378)
T ss_pred hhCCCCCc--eEEEEECHHHHHhhhcccCCCCCchhheeccchHHhhhhhcCCcccCchHHHHHHHHHHHHH---HHHcC
Confidence 99963 45 899998655543311100 0 011112222 2222333332 2332
Q ss_pred -HHHHHHHHHHHHHHHHHHHHhcC-CceecC----CceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCC
Q 044773 146 -ISENKKRLKQRHRKLVSGLEKAG-ISCLKS----NAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHC 219 (289)
Q Consensus 146 -~~~~~~~~~~~~~~l~~~l~~~g-~~~~~~----~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~ 219 (289)
++...++.+++.+++++.|++.+ +....+ .++....+.+++. +. . .+ .++...++++ |+.+..|... .
T Consensus 269 G~e~i~~r~~~l~~~l~~~l~~~~~~~~~~~~~~~~s~~i~~~~~~~~-~~-~-~~-~~~~~~l~~~-~i~v~~g~~~-~ 342 (378)
T PRK03080 269 GLDALIARTAANASVLYDWAEKTPWATPLVADPATRSNTSVTLDFVDA-QA-A-VD-AAAVAKLLRE-NGAVDIEPYR-D 342 (378)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhCCCcccccCCccccCccEEEEEcCCc-hH-H-HH-HHHHHHHHHc-CCeecccccc-C
Confidence 57777888889999999998885 454421 1222344555541 00 0 11 2355666644 8888776432 1
Q ss_pred CCCCeEEEEEec-CCHHHHHHHHHHHHHHHHHHHH
Q 044773 220 TEPGWFRVCFAN-MSEDTLKLSMQRLKAFVDSITT 253 (289)
Q Consensus 220 ~~~~~~Ris~~~-~~~e~l~~~l~~l~~~l~~~~~ 253 (289)
..+.+|+|+.. +++++++.+++.|++++++...
T Consensus 343 -~~~~vRis~~~~~t~~di~~l~~al~~~~~~~~~ 376 (378)
T PRK03080 343 -APNGLRIWCGPTVEPADVEALTPWLDWAFERLKA 376 (378)
T ss_pred -CCCcEEEecCCCCCHHHHHHHHHHHHHHHHHHhh
Confidence 34789999954 7999999999999998876653
No 312
>PRK08114 cystathionine beta-lyase; Provisional
Probab=99.35 E-value=2.9e-10 Score=103.21 Aligned_cols=135 Identities=13% Similarity=0.113 Sum_probs=91.0
Q ss_pred HHHhhhCCCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHc--CCEEEEecCCCCCccCCCCccChhhhhhccccccCCC
Q 044773 3 QLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEK--NIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEV 80 (289)
Q Consensus 3 ~~~~~~~~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~--~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 80 (289)
++++. +++|+|++.+|+||+|.+.+ +++|+++|+++ ++++++|..|+.. .. .... .
T Consensus 141 ~~~l~--~~TrlV~~EtpsNp~~~v~D---I~~Ia~ia~~~g~g~~lvVDnT~a~p----~~-~~pl------------~ 198 (395)
T PRK08114 141 AKLIQ--PNTKVVFLESPGSITMEVHD---VPAIVAAVRSVNPDAVIMIDNTWAAG----VL-FKAL------------D 198 (395)
T ss_pred HHhcC--CCceEEEEECCCCCCCEeec---HHHHHHHHHHhCCCCEEEEECCCccc----cc-cCHH------------H
Confidence 44443 47899999999999999999 99999999998 4999999999742 11 2222 2
Q ss_pred CCceEEEecCccccCCCC-ceEEEEEecCHHHHHHHHhccc-cC-CCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHH
Q 044773 81 WNRVHIVYSLSKDLGLPG-FRVGAIYSNDDTVVAAATKMSS-FG-LVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRH 157 (289)
Q Consensus 81 ~~~~i~i~s~sK~~g~~G-~r~G~i~~~~~~~~~~~~~~~~-~~-~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 157 (289)
.+-++++.|.+|+++.++ .-.|.++.+ +...+.+..... .+ ..++.....+.+-++. +.-+.++..++.
T Consensus 199 ~GaDivv~S~tKyl~Ghsdv~~G~v~~~-~~~~~~l~~~~~~~G~~~~p~~a~l~~rgl~T-------L~lR~~~~~~na 270 (395)
T PRK08114 199 FGIDISIQAGTKYLVGHSDAMIGTAVAN-ARCWEQLRENSYLMGQMVDADTAYMTSRGLRT-------LGVRLRQHEESS 270 (395)
T ss_pred cCCcEEEEcCcccccCCCcceeEEEEcC-HHHHHHHHHHHHhccCCCCHHHHHHHHcCCCc-------HHHHHHHHHHHH
Confidence 356799999999886454 778877664 334333332221 22 1333443333343443 455566677788
Q ss_pred HHHHHHHHhc
Q 044773 158 RKLVSGLEKA 167 (289)
Q Consensus 158 ~~l~~~l~~~ 167 (289)
..+.+.|+++
T Consensus 271 ~~va~~L~~h 280 (395)
T PRK08114 271 LKVAEWLAEH 280 (395)
T ss_pred HHHHHHHHcC
Confidence 8888888876
No 313
>KOG1404 consensus Alanine-glyoxylate aminotransferase AGT2 [Amino acid transport and metabolism]
Probab=99.33 E-value=2.7e-10 Score=99.52 Aligned_cols=204 Identities=14% Similarity=0.169 Sum_probs=132.2
Q ss_pred EEeCC-CCCCccC-CCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEecCccc
Q 044773 16 LVTNP-SNPLGTT-MSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVYSLSKD 93 (289)
Q Consensus 16 ~l~~p-~NPtG~~-~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~s~sK~ 93 (289)
++..| +...|.+ +++..+++..++|+++|.++|.||++++++.+| +++.+ +.++.+..|-|++|.
T Consensus 216 fiaEtIqGvgG~v~~p~GYlka~~~~v~k~Ggl~IaDEVqtGfGRtG----~~wgf---------e~h~v~PDIvTmAKg 282 (442)
T KOG1404|consen 216 FIAETIQGVGGIVELPPGYLKAAYKVVRKRGGLFIADEVQTGFGRTG----HMWGF---------ESHGVVPDIVTMAKG 282 (442)
T ss_pred EEeehhccCCccccCCchHHHHHHHHHHHcCCEEEehhhhhcccccc----ccccc---------cccCCCccHHHHHhh
Confidence 55555 6666665 577799999999999999999999999987776 33434 456778889999999
Q ss_pred cCCCCceEEEEEecCHHHHHHHHhcc-ccC--CCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHhc--C
Q 044773 94 LGLPGFRVGAIYSNDDTVVAAATKMS-SFG--LVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEKA--G 168 (289)
Q Consensus 94 ~g~~G~r~G~i~~~~~~~~~~~~~~~-~~~--~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~--g 168 (289)
+| .|+++|.++. .+.+.+.+.... .++ ..+|+...+..+.|+-.. ++ .+.+..++...+|.+.|.+. +
T Consensus 283 iG-nG~Pl~AVvt-t~EIa~v~~~~~~~fnTyggnP~a~avg~aVL~Vik--ee---~LqE~aa~vG~yl~~~l~~l~d~ 355 (442)
T KOG1404|consen 283 IG-NGFPLGAVVT-TPEIADVLNQKSSHFNTYGGNPVACAVGLAVLKVIK--EE---NLQENAAEVGSYLLEKLAALKDK 355 (442)
T ss_pred cc-CCCcceeeec-CHHHHHHHHhccccccccCCCchhHHHHHHHHHHHH--HH---hHHHHHHHHHHHHHHHHHHHhhc
Confidence 99 9999999999 456666555433 222 267777776666655322 12 22223333334444444443 2
Q ss_pred Cce--ecCCceEEEEEecCccccC---CChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEEec-CCHHHHHHHHH
Q 044773 169 ISC--LKSNAGLFCWVDMRHLLSS---NTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFAN-MSEDTLKLSMQ 242 (289)
Q Consensus 169 ~~~--~~~~~g~~~~i~~~~~~~~---~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ris~~~-~~~e~l~~~l~ 242 (289)
.+. ....-|.++-+++-+...+ +.......+.+++ ++.|+.+.-|..+|. .+||++.- .|.+|++.+++
T Consensus 356 h~iIGdVRG~GLm~GvE~V~dk~~~~pp~~~~~~~i~~~c-ke~Gvlvg~g~i~G~----vfriaPPlciT~edi~f~~~ 430 (442)
T KOG1404|consen 356 HPIIGDVRGRGLMLGVELVSDKSEPKPPATAEGAVIGEQC-KELGVLVGKGGIHGN----VFRIAPPLCITKEDIDFAVE 430 (442)
T ss_pred CCceeecccceeEEEEEEecccCCCCCcchHHHHHHHHHH-HHhCeeeecccccce----EEEecCCeeccHHHHHHHHH
Confidence 222 2233466766776543311 1111122244444 588999977776664 89999953 79999988887
Q ss_pred HH
Q 044773 243 RL 244 (289)
Q Consensus 243 ~l 244 (289)
..
T Consensus 431 ~~ 432 (442)
T KOG1404|consen 431 YF 432 (442)
T ss_pred HH
Confidence 66
No 314
>PLN02724 Molybdenum cofactor sulfurase
Probab=99.32 E-value=9.6e-11 Score=115.89 Aligned_cols=219 Identities=13% Similarity=0.060 Sum_probs=138.4
Q ss_pred CCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHc-----CCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCce
Q 044773 10 LKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEK-----NIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRV 84 (289)
Q Consensus 10 ~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~-----~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 84 (289)
+++++|.+++.+|.||.+.+.+.+..+.+.++++ ++++++|.+++. +..+.++.++ +.+
T Consensus 191 ~~t~LVa~~~vsN~tG~i~pi~~i~~~~~~~~~~~~~~g~~~v~vDaaQ~~----g~~piDv~~~------------~~D 254 (805)
T PLN02724 191 EAYNLFAFPSECNFSGAKFPLDLVKLIKDNQHSNFSKSGRWMVLLDAAKGC----GTSPPDLSRY------------PAD 254 (805)
T ss_pred CCcceEEEEccccCCCCcCCHHHHHHHHHhcccccccCcceEEEeehhhhc----CCCCCChhhc------------CCC
Confidence 4568999999999999999955443333333222 368999999973 4444555544 556
Q ss_pred EEEecCccccCCCCceEEEEEecCHHHHHHHHhcc-------------------------ccCCCChHHHHHHHHHhCCc
Q 044773 85 HIVYSLSKDLGLPGFRVGAIYSNDDTVVAAATKMS-------------------------SFGLVSSQTQYLLSALLSDK 139 (289)
Q Consensus 85 i~i~s~sK~~g~~G~r~G~i~~~~~~~~~~~~~~~-------------------------~~~~~~~~~q~~~~~~l~~~ 139 (289)
+++.|++|.+|.| ..+|+++++++.+......+. ..++.|.+...++.++++.
T Consensus 255 fl~~S~HK~~GgP-~G~G~L~vr~~~~~~l~p~~~GGg~~~~~~~~~~~~~~~~~~~~rfE~GT~n~~~i~~l~aal~~- 332 (805)
T PLN02724 255 FVVVSFYKIFGYP-TGLGALLVRRDAAKLLKKKYFGGGTVAASIADIDFVKRRERVEQRFEDGTISFLSIAALRHGFKL- 332 (805)
T ss_pred EEEEecceeccCC-CCceEEEEehhhhhhhcCCccCCCceEEEecccceeeccccHHHHhcCCCcchhHHHHHHHHHHH-
Confidence 9999999999733 348999986554332111100 0112333444445444432
Q ss_pred hHHHH-HHHHHHHHHHHHHHHHHHHHHhc-------CCceecCC--------ceEEEEEecCccccCCChhhHHHHHHHH
Q 044773 140 KFAQN-YISENKKRLKQRHRKLVSGLEKA-------GISCLKSN--------AGLFCWVDMRHLLSSNTFEAEMELWKKI 203 (289)
Q Consensus 140 ~~~~~-~~~~~~~~~~~~~~~l~~~l~~~-------g~~~~~~~--------~g~~~~i~~~~~~~~~~~~~~~~~~~~l 203 (289)
+.+ -+++..++.++..+++.+.|.++ +++++++. -+..+.+.+...... . .. ...+..+
T Consensus 333 --l~~ig~~~I~~~~~~L~~~l~~~L~~l~~~~g~~~v~iyg~~~~~~~~~~r~~ivsFnv~~~~~~-~-v~-~~~v~~l 407 (805)
T PLN02724 333 --LNRLTISAIAMHTWALTHYVANSLRNLKHGNGAPVCVLYGNHTFKLEFHIQGPIVTFNLKRADGS-W-VG-HREVEKL 407 (805)
T ss_pred --HHHhChHHHHHHHHHHHHHHHHHHHhccCCCCCeEEEEcCCCCCCCCcccccCEEEEEEEcCCCC-E-eC-HHHHHHH
Confidence 222 25677788888889999999876 25566542 122333444432111 1 11 1235567
Q ss_pred HHhcCeEEeCCCCCCCC---------------------------------CCCeEEEEEec-CCHHHHHHHHHHHHHHHH
Q 044773 204 VYDVKLNISPGSSCHCT---------------------------------EPGWFRVCFAN-MSEDTLKLSMQRLKAFVD 249 (289)
Q Consensus 204 l~~~gi~v~pg~~f~~~---------------------------------~~~~~Ris~~~-~~~e~l~~~l~~l~~~l~ 249 (289)
+.++||.++.|.+|.+. +.+.+|+|++. ++.+|++.+++.|++..-
T Consensus 408 ~~~~gI~vR~G~~Ca~~~~~~~lg~~~~~l~~~~~~~~~c~~~~~~~~~~~~G~vRvS~g~ynt~eDvd~lv~~l~~~~~ 487 (805)
T PLN02724 408 ASLSGIQLRTGCFCNPGACAKYLGLSHKDLQANFEAGHVCWDDQDVIHGRPTGAVRVSFGYMSTFEDCQKFIDFIISSFV 487 (805)
T ss_pred HHhcCcEEeeccccCchHHHHHcCCCHHHHHHHhhcCCccCchhheecCcccceEEEEcCccCCHHHHHHHHHHHHHHhh
Confidence 77889999999887531 23889999976 799999999999988655
Q ss_pred HH
Q 044773 250 SI 251 (289)
Q Consensus 250 ~~ 251 (289)
..
T Consensus 488 ~~ 489 (805)
T PLN02724 488 ST 489 (805)
T ss_pred cC
Confidence 44
No 315
>KOG0053 consensus Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism]
Probab=99.32 E-value=7.3e-11 Score=104.97 Aligned_cols=131 Identities=18% Similarity=0.212 Sum_probs=85.2
Q ss_pred CCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEec
Q 044773 10 LKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVYS 89 (289)
Q Consensus 10 ~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~s 89 (289)
+++++|++.+|.||+..+.+ +++|.++|+++|++|++|+.+.+..+ .....+ +-+|++.|
T Consensus 161 ~~t~~V~~ESPsNPll~v~D---I~~l~~la~~~g~~vvVDnTf~~p~~-----~~pL~l------------GADIV~hS 220 (409)
T KOG0053|consen 161 ENTKAVFLESPSNPLLKVPD---IEKLARLAHKYGFLVVVDNTFGSPYN-----QDPLPL------------GADIVVHS 220 (409)
T ss_pred cCceEEEEECCCCCcccccc---HHHHHHHHhhCCCEEEEeCCcCcccc-----cChhhc------------CCCEEEEe
Confidence 36999999999999999988 99999999999999999999985411 111112 45599999
Q ss_pred CccccC-CCCceEEEEEecCHHHHHHHHhccc-cC-CCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 044773 90 LSKDLG-LPGFRVGAIYSNDDTVVAAATKMSS-FG-LVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEK 166 (289)
Q Consensus 90 ~sK~~g-~~G~r~G~i~~~~~~~~~~~~~~~~-~~-~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 166 (289)
.+|++| .+.+=.|.++.+...+...+..... .+ ..+++....+.+-++.. .-+.++..++...+.+.|++
T Consensus 221 aTKyi~Ghsdvi~G~iv~n~~~~~~~l~~~~~~lg~~~~p~~~~ll~Rglktl-------~lRi~~~~ena~~~A~~Le~ 293 (409)
T KOG0053|consen 221 ATKYIGGHSDVIGGSVVLNSEELASRLKFLQEDLGWCEDPFDLFLLSRGLKTL-------HLRINKHSENALKIALLLEA 293 (409)
T ss_pred eeeeecCCcceeeeEEecCcHHHHHHHHHHHHHhcCCCCHHHHHHHhcCcchh-------hhhHHHHHHHHHHHHHHhhh
Confidence 999995 4456678888865665554444332 22 24444444444444432 22223344444445555555
Q ss_pred c
Q 044773 167 A 167 (289)
Q Consensus 167 ~ 167 (289)
.
T Consensus 294 ~ 294 (409)
T KOG0053|consen 294 H 294 (409)
T ss_pred C
Confidence 3
No 316
>cd00616 AHBA_syn 3-amino-5-hydroxybenzoic acid synthase family (AHBA_syn). AHBA_syn family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The members of this CD are involved in various biosynthetic pathways for secondary metabolites. Some well studied proteins in this CD are AHBA_synthase, protein product of pleiotropic regulatory gene degT, Arnb aminotransferase and pilin glycosylation protein. The prototype of this family, the AHBA_synthase, is a dimeric PLP dependent enzyme. AHBA_syn is the terminal enzyme of 3-amino-5-hydroxybenzoic acid (AHBA) formation which is involved in the biosynthesis of ansamycin antibiotics, including rifamycin B. Some members of this CD are involved in 4-amino-6-deoxy-monosaccharide D-perosamine synthesis. Perosamine is an important element in the glycosylation of several cell products, such as antibiotics and lipopolysaccharides of gram-positive and gram-negative bacteria. The pilin glycosylation protein
Probab=99.31 E-value=2.3e-10 Score=102.73 Aligned_cols=202 Identities=12% Similarity=0.137 Sum_probs=117.0
Q ss_pred CCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEec
Q 044773 10 LKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVYS 89 (289)
Q Consensus 10 ~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~s 89 (289)
+++++|++++ |+|.+.+ +++|.++|+++++++|+|++|+........ . . . . ..++.+.|
T Consensus 105 ~~~~~v~~~~---~~G~~~~---~~~i~~l~~~~~i~li~D~a~~~g~~~~~~--~---~-~--------~-~~d~~~~S 163 (352)
T cd00616 105 PRTKAIIPVH---LYGNPAD---MDAIMAIAKRHGLPVIEDAAQALGATYKGR--K---V-G--------T-FGDAGAFS 163 (352)
T ss_pred cCCeEEEEEC---CCCCcCC---HHHHHHHHHHcCCeEEEECCCCCCCeECCE--E---c-c--------c-CcceeEEc
Confidence 5788888764 6898877 888999999999999999999842111110 0 0 0 0 12356677
Q ss_pred Cc--cccCCCCceEEEEEecCHHHHHHHHhccccCC-------------CC-hHHHHHHHHHhCCchHHHHHHHHHHHHH
Q 044773 90 LS--KDLGLPGFRVGAIYSNDDTVVAAATKMSSFGL-------------VS-SQTQYLLSALLSDKKFAQNYISENKKRL 153 (289)
Q Consensus 90 ~s--K~~g~~G~r~G~i~~~~~~~~~~~~~~~~~~~-------------~~-~~~q~~~~~~l~~~~~~~~~~~~~~~~~ 153 (289)
++ |.++ +...|+++++++.+.+.++.....+. .+ .+.....+..+. . ...+++..++.
T Consensus 164 ~~~~K~~~--~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~~~--~--l~~~~~~~~~~ 237 (352)
T cd00616 164 FHPTKNLT--TGEGGAVVTNDEELAERARLLRNHGRDRDRFKYEHEILGYNYRLSEIQAAIGLA--Q--LEKLDEIIARR 237 (352)
T ss_pred CCCCCCCc--ccCceEEEECCHHHHHHHHHHHHcCCCCCCCccccceeeeccCcCHHHHHHHHH--H--HHhhHHHHHHH
Confidence 66 9884 22358898877665554433211100 00 111111111111 1 22245566667
Q ss_pred HHHHHHHHHHHHhc-CCceecCCc-----eEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCC-------
Q 044773 154 KQRHRKLVSGLEKA-GISCLKSNA-----GLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCT------- 220 (289)
Q Consensus 154 ~~~~~~l~~~l~~~-g~~~~~~~~-----g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~------- 220 (289)
+++.+++.+.|.++ |+++..+.. ...+.+.++.. .. .+..++...|. +.||.+.. .|.+.
T Consensus 238 ~~~~~~~~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~---~~~~~v~~~L~-~~gI~~~~--~~~~~~~~~~~~ 310 (352)
T cd00616 238 REIAERYKELLADLPGIRLPDVPPGVKHSYHLYVIRLDPE-AG---ESRDELIEALK-EAGIETRV--HYPPLHHQPPYK 310 (352)
T ss_pred HHHHHHHHHHhcCCCCccCCCCCCCCceeeEEEEEEECCc-CC---CCHHHHHHHHH-HCCCCeee--ecCccccCHhhh
Confidence 78888899999886 777654321 23334445431 01 12245777664 66996642 22110
Q ss_pred ----------C------CCeEEEEEec-CCHHHHHHHHHHHH
Q 044773 221 ----------E------PGWFRVCFAN-MSEDTLKLSMQRLK 245 (289)
Q Consensus 221 ----------~------~~~~Ris~~~-~~~e~l~~~l~~l~ 245 (289)
+ .+.+|+++.. ++++|++.+++.|+
T Consensus 311 ~~~~~~~~~~~~a~~~~~~~l~l~~~~~~t~~di~~i~~~l~ 352 (352)
T cd00616 311 KLLGYPPGDLPNAEDLAERVLSLPLHPSLTEEEIDRVIEALR 352 (352)
T ss_pred hccCCCcCCChHHHHHHhCeEEccCCCCCCHHHHHHHHHHhC
Confidence 0 2679999954 79999999998873
No 317
>TIGR01364 serC_1 phosphoserine aminotransferase. This model represents the common form of the phosphoserine aminotransferase SerC. The phosphoserine aminotransferase of the archaeon Methanosarcina barkeri and putative phosphoserine aminotransferase of Mycobacterium tuberculosis are represented by separate models. All are members of the class V aminotransferases (pfam00266).
Probab=99.30 E-value=3.4e-10 Score=101.67 Aligned_cols=201 Identities=14% Similarity=0.128 Sum_probs=134.1
Q ss_pred hCCCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEE
Q 044773 8 RHLKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIV 87 (289)
Q Consensus 8 ~~~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i 87 (289)
..+++++|.+++..+.||...+ ++++.+++++++|.+.+- +..+..+.++ + +++
T Consensus 127 ~~~~~~~v~~th~ETstGv~~~--------~l~~~~~~l~iVDavss~----g~~~id~~~~------------d--~~~ 180 (349)
T TIGR01364 127 ISEDAAYVHYCANETIHGVEFR--------ELPDVKNAPLVADMSSNI----LSRPIDVSKF------------G--LIY 180 (349)
T ss_pred CCCCCCEEEEcCCCCcccEecc--------eecccCCCeEEEEccccc----cCccCCHHHc------------c--EEE
Confidence 3458999999999999999765 556668999999999983 3444454433 3 889
Q ss_pred ecCccccCCCCceEEEEEecCHHHHHHHH-------------hccccCCCChHHHHHHHHHhCCchHHHHH--HHHHHHH
Q 044773 88 YSLSKDLGLPGFRVGAIYSNDDTVVAAAT-------------KMSSFGLVSSQTQYLLSALLSDKKFAQNY--ISENKKR 152 (289)
Q Consensus 88 ~s~sK~~g~~G~r~G~i~~~~~~~~~~~~-------------~~~~~~~~~~~~q~~~~~~l~~~~~~~~~--~~~~~~~ 152 (289)
.|..|.+|.+| +|.++++++.+..... ....++++|.....++..+++.. .+. ++.+.++
T Consensus 181 ~ssqK~lgP~G--lg~l~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~Tp~~~~i~al~~al~~l---~~~gG~e~i~~r 255 (349)
T TIGR01364 181 AGAQKNIGPAG--LTVVIVRKDLLGRASRITPSMLNYKIHAENDSMYNTPPTFAIYVSGLVFKWL---KEQGGVKAIEKR 255 (349)
T ss_pred EecccccCCCc--eEEEEECHHHHhhcccCCCCcchHHHHHhcCCCCCCCcHHHHHHHHHHHHHH---HHcCCHHHHHHH
Confidence 99999999667 8899886655432101 01112334445555555555532 332 7888899
Q ss_pred HHHHHHHHHHHHHhc-CCceecC----CceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEE
Q 044773 153 LKQRHRKLVSGLEKA-GISCLKS----NAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRV 227 (289)
Q Consensus 153 ~~~~~~~l~~~l~~~-g~~~~~~----~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ri 227 (289)
.++..+++++.|+++ |+..... ..+....+.++.. . . ..++...+ .+.|+++.+|.. ..+.+|+
T Consensus 256 ~~~l~~~l~~~l~~~~gl~~~~~~~~~rs~~v~sf~~~~~--~---~-~~~~~~~~-~~~Gi~~~~~~~----~~g~vRv 324 (349)
T TIGR01364 256 NQAKAQLLYDTIDNSNGFYRNPVDPRNRSRMNVVFTLGNE--E---L-EKRFLKEA-EERGLVSLKGHR----SVGGMRA 324 (349)
T ss_pred HHHHHHHHHHHHHhCCCeeccCCCHHHcCCeEEEEecCCh--h---H-hHHHHHHH-HHCCCcccCCcc----ccCeeEE
Confidence 999999999999998 5533321 1223344555532 0 1 12344444 467997777654 1358999
Q ss_pred EEec-CCHHHHHHHHHHHHHHHHH
Q 044773 228 CFAN-MSEDTLKLSMQRLKAFVDS 250 (289)
Q Consensus 228 s~~~-~~~e~l~~~l~~l~~~l~~ 250 (289)
|+.. ++.+|++.+++.|++++++
T Consensus 325 S~~~~nt~edid~l~~al~~~~~~ 348 (349)
T TIGR01364 325 SIYNAMPLEGVQALVDFMKEFQKK 348 (349)
T ss_pred ECcCCCCHHHHHHHHHHHHHHHHh
Confidence 9954 7999999999999987653
No 318
>KOG1368 consensus Threonine aldolase [Amino acid transport and metabolism]
Probab=99.29 E-value=2.1e-10 Score=96.85 Aligned_cols=212 Identities=16% Similarity=0.191 Sum_probs=131.9
Q ss_pred CCCccEEEEeCCCCCCc-cCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEE
Q 044773 9 HLKVKGVLVTNPSNPLG-TTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIV 87 (289)
Q Consensus 9 ~~~~~~i~l~~p~NPtG-~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i 87 (289)
.|.+++|++.|-+|-+| .++|.++++++.++|+++++.+..|-+--...- -....++..+... .| -+-
T Consensus 152 ~p~T~LIclENT~~~~Gg~vlPle~~~~v~~lak~~glkLH~DGARi~NAa-vasgV~vk~i~~~--------fD--SVs 220 (384)
T KOG1368|consen 152 MPPTKLICLENTHNNCGGKVLPLEELDRVKALAKRHGLKLHMDGARIFNAA-VASGVPVKKICSA--------FD--SVS 220 (384)
T ss_pred CCCceEEEeeccccccCceEeeHHHHHHHHHHHhccCCeeecchhhhhhHH-HHcCCCHHHHHHh--------hh--hhh
Confidence 36799999999976665 999999999999999999999999998752111 1122344455431 12 234
Q ss_pred ecCccccCCCCceEEEEEecCHHHHHHHHhcc-ccCCC-ChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044773 88 YSLSKDLGLPGFRVGAIYSNDDTVVAAATKMS-SFGLV-SSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLE 165 (289)
Q Consensus 88 ~s~sK~~g~~G~r~G~i~~~~~~~~~~~~~~~-~~~~~-~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 165 (289)
-+|||.+|.| +|.++.-+..+++..+.+. .++.. -.....+++++..-. +... ..+.-.++.+.+.+.++
T Consensus 221 iCLSKglgAP---VGSViVG~k~FI~kA~~~RKalGGGmRQsGvLaaaaLval~----~~~~-~L~~dHk~A~~lAe~~~ 292 (384)
T KOG1368|consen 221 ICLSKGLGAP---VGSVIVGSKDFIDKARHFRKALGGGMRQSGVLAAAALVALD----ENVP-LLRADHKRAKELAEYIN 292 (384)
T ss_pred hhhhccCCCC---cccEEEccHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHhh----cchH-HHHHHHHHHHHHHHHhc
Confidence 5699999865 5666655666666555442 23221 122333333333221 1122 22333444556777777
Q ss_pred hc-CCceecC-CceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEEec-CCHHHHHHHHH
Q 044773 166 KA-GISCLKS-NAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFAN-MSEDTLKLSMQ 242 (289)
Q Consensus 166 ~~-g~~~~~~-~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ris~~~-~~~e~l~~~l~ 242 (289)
.. ++++..+ .-..+..+.+...- ....+++..+ +++||.+.++..+ .+|+.+-+ .++++++.++.
T Consensus 293 ~~~~i~v~v~a~etNiv~~~l~q~~-----~~~~~l~~~~-~k~gi~lm~~~s~------r~Rivlh~Qvt~~~ve~~~~ 360 (384)
T KOG1368|consen 293 TPEEIRVEVPAVETNIVNMVLCQAR-----LTAEELCKFL-EKNGILLMGGASR------RIRIVLHHQVTDEDVEYVKS 360 (384)
T ss_pred cccceeeecchhhcceeeeeccccc-----CCHHHHHHHH-HHCCeEEeecccc------ceEEEEEEecCHHHHHHHHH
Confidence 66 3776655 22345555554321 2234677766 5889999988765 47999955 79999999999
Q ss_pred HH-HHHHHHH
Q 044773 243 RL-KAFVDSI 251 (289)
Q Consensus 243 ~l-~~~l~~~ 251 (289)
.+ +.++...
T Consensus 361 ~~~k~~~~q~ 370 (384)
T KOG1368|consen 361 VLSKKFLKQL 370 (384)
T ss_pred HHHHHHHhhc
Confidence 99 5555554
No 319
>KOG1411 consensus Aspartate aminotransferase/Glutamic oxaloacetic transaminase AAT1/GOT2 [Amino acid transport and metabolism]
Probab=99.28 E-value=5.1e-11 Score=102.37 Aligned_cols=213 Identities=19% Similarity=0.319 Sum_probs=148.7
Q ss_pred hhhCCCccEEEEeCC-CCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCC--ccChhhhhhccccccCCCCC
Q 044773 6 QKRHLKVKGVLVTNP-SNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPG--FVSIMEILKDRNCENTEVWN 82 (289)
Q Consensus 6 ~~~~~~~~~i~l~~p-~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~--~~~~~~~~~~~~~~~~d~~~ 82 (289)
+...|.-..|++.-+ |||||.-.+.+.+++|.++.++.+.+-+.|.+|+++.-+... -.++.-++. ...
T Consensus 192 l~~~p~gs~ilLhaCaHNPTGvDPt~eqw~ki~~~~~~k~~~pffDmAYQGfaSG~~d~DA~avR~F~~--------~g~ 263 (427)
T KOG1411|consen 192 LGEAPEGSIILLHACAHNPTGVDPTKEQWEKISDLIKEKNLLPFFDMAYQGFASGDLDKDAQAVRLFVE--------DGH 263 (427)
T ss_pred HhcCCCCcEEEeehhhcCCCCCCccHHHHHHHHHHhhhccccchhhhhhcccccCCchhhHHHHHHHHH--------cCC
Confidence 334444445566666 999999999999999999999999999999999987443221 122333333 446
Q ss_pred ceEEEecCccccCCCCceEEEE--EecCHHHHHHHH----hc--cccCCCChHHHHHHHHHhCCchHHHHH---HHHHHH
Q 044773 83 RVHIVYSLSKDLGLPGFRVGAI--YSNDDTVVAAAT----KM--SSFGLVSSQTQYLLSALLSDKKFAQNY---ISENKK 151 (289)
Q Consensus 83 ~~i~i~s~sK~~g~~G~r~G~i--~~~~~~~~~~~~----~~--~~~~~~~~~~q~~~~~~l~~~~~~~~~---~~~~~~ 151 (289)
++++..|++|-||+-|-|+|.+ +|.+......++ .. .-+++++.....+++..+.+..+-.+| ++.+..
T Consensus 264 ~~~laQSyAKNMGLYgERvGa~svvc~~ad~A~rV~SQlk~liRpmYSnPP~hGArIv~~Il~d~~l~~~W~~evk~Mad 343 (427)
T KOG1411|consen 264 EILLAQSYAKNMGLYGERVGALSVVCKDADEAKRVESQLKILIRPMYSNPPLHGARIVATILSDPDLKNQWLGEVKGMAD 343 (427)
T ss_pred ceEeehhhhhhcchhhhccceeEEEecCHHHHHHHHHHHHHHhcccccCCCccchhhhhhccCChHHHHHHHHHHHHHHH
Confidence 7788999999999999999996 566555443332 11 224445557778888889887653344 455667
Q ss_pred HHHHHHHHHHHHHHhcC----CceecCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEE
Q 044773 152 RLKQRHRKLVSGLEKAG----ISCLKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRV 227 (289)
Q Consensus 152 ~~~~~~~~l~~~l~~~g----~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ri 227 (289)
++...++.|.+.|+..| |.....+-|+|++-.+.. +..+.|.+++.|.+.. ++ ||
T Consensus 344 Ri~~mR~~L~d~L~~~gs~~~W~hI~~QIGMF~fTgl~p-----------eQv~~l~ke~~iYmT~--------dG--Ri 402 (427)
T KOG1411|consen 344 RIISMRQQLFDALEKEGSPGNWSHITKQIGMFCFTGLNP-----------EQVDWLTKEYHIYLTK--------DG--RI 402 (427)
T ss_pred hhhhhHHHHhHHhhcCCCCccHHHHHHhhheeeecCCCH-----------HHHHHHHhhheeeecc--------Cc--eE
Confidence 78888888888887763 444667778999876653 3667788898888762 22 99
Q ss_pred EEecCCHHHHHHHHHHHHHH
Q 044773 228 CFANMSEDTLKLSMQRLKAF 247 (289)
Q Consensus 228 s~~~~~~e~l~~~l~~l~~~ 247 (289)
|++..+...+.-+.++|.++
T Consensus 403 S~aG~ss~nV~yLa~aih~v 422 (427)
T KOG1411|consen 403 SMAGLSSSNVPYLADAIHAV 422 (427)
T ss_pred eeccccccCCcccchhhHhH
Confidence 99766666666555555443
No 320
>TIGR02379 ECA_wecE TDP-4-keto-6-deoxy-D-glucose transaminase. This family consists of TDP-4-keto-6-deoxy-D-glucose transaminases, the WecE (formerly RffA) protein of enterobacterial common antigen (ECA) biosynthesis, from enterobacteria. It also includes closely matching sequence from species not expected to make ECA, but which contain other genes for the biosynthesis of TDP-4-keto-6-deoxy-D-Glc, an intermediate in the biosynthesis of other compounds as well and the substrate of WecA. This family belongs to the DegT/DnrJ/EryC1/StrS aminotransferase family (pfam01041).
Probab=99.27 E-value=5.1e-10 Score=101.58 Aligned_cols=207 Identities=14% Similarity=0.167 Sum_probs=113.6
Q ss_pred CCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCc-cCCCCccChhhhhhccccccCCCCCceEEEe
Q 044773 10 LKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTV-FSSPGFVSIMEILKDRNCENTEVWNRVHIVY 88 (289)
Q Consensus 10 ~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~-~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~ 88 (289)
+++|+|+ |+||+|...+ +++|.++|+++|++||+|++|+... +.+....+ ...++
T Consensus 118 ~~tk~Ii---p~~~~G~~~d---~~~I~~la~~~~i~vIeDaa~~~g~~~~~~~~g~------------------~~~~~ 173 (376)
T TIGR02379 118 HRTKAIV---PVHYAGVACD---MDTIMALANKHQLFVIEDAAQGVMSTYKGRALGS------------------IGHLG 173 (376)
T ss_pred cCceEEE---EeCCCCCccC---HHHHHHHHHHCCCEEEEECccccCCccCCcccCC------------------CCCEE
Confidence 4688875 6678999988 8899999999999999999998543 33322111 11233
Q ss_pred cCc----cccCCCCceEEEEEecCHHHHHHHHhccccCC-------------------CCh-HHHHHHHHHhCCchHHHH
Q 044773 89 SLS----KDLGLPGFRVGAIYSNDDTVVAAATKMSSFGL-------------------VSS-QTQYLLSALLSDKKFAQN 144 (289)
Q Consensus 89 s~s----K~~g~~G~r~G~i~~~~~~~~~~~~~~~~~~~-------------------~~~-~~q~~~~~~l~~~~~~~~ 144 (289)
+|| |.+. +|.+.|+++++++.+.+.++.+...+. .|. +....++-.+.....+++
T Consensus 174 ~fSf~~~K~l~-~g~~gG~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~n~~~~~~~Aa~g~~qL~~l~~ 252 (376)
T TIGR02379 174 TFSFHETKNYT-SGGEGGALLINDQAFIERAEIIREKGTNRSQFFRGEVDKYTWRDIGSSYLPSELQAAYLWAQLEQADR 252 (376)
T ss_pred EEeCCCCCcCc-ccCCceEEEECCHHHHHHHHHHHHhCCCCccccccCCCcceeeeecccCCccHHHHHHHHHHHHHhHH
Confidence 444 8886 677889999988877766654332110 111 111112222222222355
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCce--ecCCc--e-EEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCC----
Q 044773 145 YISENKKRLKQRHRKLVSGLEKAGISC--LKSNA--G-LFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGS---- 215 (289)
Q Consensus 145 ~~~~~~~~~~~~~~~l~~~l~~~g~~~--~~~~~--g-~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~---- 215 (289)
..+++++.++...+.|.....+..+.. .++.. . ++.++.++... +-+++...|. ++||.+.+..
T Consensus 253 ~~~~r~~~~~~y~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~------~r~~l~~~L~-~~gI~~~~~~~p~~ 325 (376)
T TIGR02379 253 INQDRLATWQLYQDALKPLEEKGIIELPSIPNGCQHNAHMFYIKLKDED------DRNELIKYLK-EQEIMAVFHYVPLH 325 (376)
T ss_pred HHHHHHHHHHHHHHHhccCCcCCeeeCCCCCCCCeeeeEEEEEEECCcC------CHHHHHHHHH-HCCCCccccCcCCC
Confidence 555555555554444433221111111 11111 1 12345554321 2245666664 6799876432
Q ss_pred CCC------C-CC---------CCeEEEEE-ecCCHHHHHHHHHHHHHHH
Q 044773 216 SCH------C-TE---------PGWFRVCF-ANMSEDTLKLSMQRLKAFV 248 (289)
Q Consensus 216 ~f~------~-~~---------~~~~Ris~-~~~~~e~l~~~l~~l~~~l 248 (289)
... . .. ...+.+-+ ..+++++++..++.|++++
T Consensus 326 ~~~~~~~~~~~~~~~p~~~~~~~~~l~LP~~~~l~~~~~~~i~~~i~~~~ 375 (376)
T TIGR02379 326 SSPAGRYFGRFHGEDIYTTKESERLVRLPLYYGLSKEDQARVIQTICDYL 375 (376)
T ss_pred cchhHHhhCCCCCCChHHHHHHhceEEccCCCCCCHHHHHHHHHHHHHHh
Confidence 100 0 00 13455555 3379999999999998764
No 321
>PLN02271 serine hydroxymethyltransferase
Probab=99.25 E-value=1.3e-09 Score=101.26 Aligned_cols=212 Identities=12% Similarity=0.062 Sum_probs=136.5
Q ss_pred CCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEec
Q 044773 10 LKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVYS 89 (289)
Q Consensus 10 ~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~s 89 (289)
.++|+|++....|| ..++ ++++.++|+++|+++++|.+|......+...++.. ...+++.+|
T Consensus 297 ~rPKLII~g~Sayp--r~~D---~~~i~eIAdevGA~LmvD~AH~aGLIa~g~~~sP~-------------~~aDvvt~T 358 (586)
T PLN02271 297 FRPKILICGGSSYP--REWD---YARFRQIADKCGAVLMCDMAHISGLVAAKECVNPF-------------DYCDIVTST 358 (586)
T ss_pred cCCeEEEECchhcc--CcCC---HHHHHHHHHHcCCEEEEECcccccccccCcCCCCC-------------cCCcEEEeC
Confidence 58999888777787 5666 88889999999999999999975444333222211 124588999
Q ss_pred CccccCCCCceEEEEEecCH-------------------HHHHHHHhc-cccCCCCh--HHHHHHHHHhCCchHHHHHHH
Q 044773 90 LSKDLGLPGFRVGAIYSNDD-------------------TVVAAATKM-SSFGLVSS--QTQYLLSALLSDKKFAQNYIS 147 (289)
Q Consensus 90 ~sK~~g~~G~r~G~i~~~~~-------------------~~~~~~~~~-~~~~~~~~--~~q~~~~~~l~~~~~~~~~~~ 147 (289)
.+|++. |-|-|.|+++++ .+.+.+... -.....++ ....+++.+++... ....+
T Consensus 359 THKtLr--GPrGG~I~~r~~~~~~~~g~~gs~s~~~~~~d~~~kI~~aVfPglqgGphn~~IAalAvalkea~--~~efk 434 (586)
T PLN02271 359 THKSLR--GPRGGIIFYRKGPKLRKQGMLLSHGDDNSHYDFEEKINFAVFPSLQGGPHNNHIAALAIALKQVA--TPEYK 434 (586)
T ss_pred CcccCC--CCCceEEEecccccccccCCccccccccccHHHHHHhhcccCCccccChhHHHHHHHHHHHHHHh--ChHHH
Confidence 999993 333388888542 133333322 11222333 23344444455322 22236
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCceecC-CceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCC---CCCCC
Q 044773 148 ENKKRLKQRHRKLVSGLEKAGISCLKS-NAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCH---CTEPG 223 (289)
Q Consensus 148 ~~~~~~~~~~~~l~~~l~~~g~~~~~~-~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~---~~~~~ 223 (289)
+-.++..++.+.|.+.|.+.|+++... ..+..+++++...-.. -..++..+++.||.+.--.-++ +..++
T Consensus 435 ~Ya~QVv~NAkaLA~~L~~~G~~vv~ggTdnHlvLvDl~~~g~~------G~~ae~~Le~~~I~~Nkn~iP~d~~~~~ps 508 (586)
T PLN02271 435 AYMQQVKKNAQALASALLRRKCRLVTGGTDNHLLLWDLTTLGLT------GKNYEKVCEMCHITLNKTAIFGDNGTISPG 508 (586)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCeEeeCCCCcceeeecCcccCCC------HHHHHHHHHHcCeEeccccCCCCCCCCCCC
Confidence 667778888999999999999987643 3356677888643211 2477778889999985322222 22356
Q ss_pred eEEEEEec-----CCHHHHHHHHHHHHHHHH
Q 044773 224 WFRVCFAN-----MSEDTLKLSMQRLKAFVD 249 (289)
Q Consensus 224 ~~Ris~~~-----~~~e~l~~~l~~l~~~l~ 249 (289)
.+||+... ..++++++..+-|.++++
T Consensus 509 GiRiGT~alT~rG~~e~d~~~iA~~i~~~~~ 539 (586)
T PLN02271 509 GVRIGTPAMTSRGCLESDFETIADFLLRAAQ 539 (586)
T ss_pred cccccCHHHHhcCCCcHHHHHHHHHHHHHHh
Confidence 79999843 356889998888888877
No 322
>PRK05355 3-phosphoserine/phosphohydroxythreonine aminotransferase; Provisional
Probab=99.24 E-value=3.7e-10 Score=101.91 Aligned_cols=200 Identities=15% Similarity=0.133 Sum_probs=133.1
Q ss_pred CCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEec
Q 044773 10 LKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVYS 89 (289)
Q Consensus 10 ~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~s 89 (289)
+++++|.+++..+.||...+ ++++| +++++|+|.+.+- |....++.++ + +++.|
T Consensus 140 ~~~~~V~~th~eTstGv~~~--~i~~i------~g~l~vVDavss~----g~~~idv~~~------------d--~~~~s 193 (360)
T PRK05355 140 DDAAYVHYTSNETIDGTEFH--ELPDT------GDVPLVADMSSDI----LSRPIDVSKF------------G--LIYAG 193 (360)
T ss_pred CCCCEEEEccCCCcceEecC--ccccc------CCCcEEEEcCccc----cCccCCHHHc------------c--EEEEe
Confidence 36899999999999999984 25555 8999999999983 3433444333 3 88999
Q ss_pred CccccCCCCceEEEEEecCHHHHHHHH-------------hccccCCCChHHHHHHHHHhCCchHHHH-HHHHHHHHHHH
Q 044773 90 LSKDLGLPGFRVGAIYSNDDTVVAAAT-------------KMSSFGLVSSQTQYLLSALLSDKKFAQN-YISENKKRLKQ 155 (289)
Q Consensus 90 ~sK~~g~~G~r~G~i~~~~~~~~~~~~-------------~~~~~~~~~~~~q~~~~~~l~~~~~~~~-~~~~~~~~~~~ 155 (289)
..|.+|.+| +|.++++++.+..... .....+++|.....++..+|+... +. -++...++.++
T Consensus 194 sqK~lgP~G--lg~l~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~Tp~~~~i~aL~~aL~~i~--~~gG~e~i~~r~~~ 269 (360)
T PRK05355 194 AQKNIGPAG--LTIVIVREDLLGRALPSIPSMLDYKTHADNDSMYNTPPTFAIYLAGLVFKWLK--EQGGVAAMEKRNQE 269 (360)
T ss_pred ccccccCCc--eEEEEECHHHHhhcccCCChHHHHHHHHhcCCccCCCcHHHHHHHHHHHHHHH--HccCHHHHHHHHHH
Confidence 999998666 8888886655433111 011123344555556666655321 22 26888899999
Q ss_pred HHHHHHHHHHhcCCc-eecC---CceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEEec
Q 044773 156 RHRKLVSGLEKAGIS-CLKS---NAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFAN 231 (289)
Q Consensus 156 ~~~~l~~~l~~~g~~-~~~~---~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ris~~~ 231 (289)
..+++++.|+++|+. ...+ ..+....+.++.. .+..++...+. +.|+.+.+|.. ..+.+|+|+..
T Consensus 270 l~~~l~~~l~~~~~~~~~~~~~~rs~~v~sf~~~~~------~~~~~~~~~~~-~~Gi~~~~~~~----~~g~vRiS~~~ 338 (360)
T PRK05355 270 KAALLYDAIDSSDFYRNPVAPEDRSRMNVPFTLADE------ELDKKFLAEAK-AAGLVGLKGHR----SVGGMRASIYN 338 (360)
T ss_pred HHHHHHHHHHhCCCcccCCChhhcCCcEEEEEcCCh------HHHHHHHHHHH-HCCCcccCCCC----ccCcEEEECCC
Confidence 999999999998642 2111 1223344555543 11123444444 67999866653 23689999965
Q ss_pred -CCHHHHHHHHHHHHHHHHH
Q 044773 232 -MSEDTLKLSMQRLKAFVDS 250 (289)
Q Consensus 232 -~~~e~l~~~l~~l~~~l~~ 250 (289)
++.+|++.+++.|+++++.
T Consensus 339 ~nt~eei~~l~~~l~~~~~~ 358 (360)
T PRK05355 339 AMPLEGVQALVDFMKEFERR 358 (360)
T ss_pred CCCHHHHHHHHHHHHHHHHh
Confidence 7999999999999997764
No 323
>cd00611 PSAT_like Phosphoserine aminotransferase (PSAT) family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major group in this CD corresponds to phosphoserine aminotransferase (PSAT). PSAT is active as a dimer and catalyzes the conversion of phosphohydroxypyruvate to phosphoserine.
Probab=99.23 E-value=1.1e-09 Score=98.79 Aligned_cols=199 Identities=15% Similarity=0.136 Sum_probs=128.8
Q ss_pred hCCCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEE
Q 044773 8 RHLKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIV 87 (289)
Q Consensus 8 ~~~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i 87 (289)
.++++++|.+++..|.||..++ ++++.+|+++++|.+++- |..+.++.++ + +.+
T Consensus 135 ~~~~~~lV~~~h~~t~tG~~~~--------~i~~~~g~~~~VDa~qs~----g~~~idv~~~------------~--~~~ 188 (355)
T cd00611 135 LAPDAAYVHYCSNETIHGVEFD--------EVPDTGGVPLVADMSSNI----LSRPIDVSKF------------G--VIY 188 (355)
T ss_pred CCCCCCEEEEeCCcccccEEcc--------eecccCCCeEEEEccccc----cCCCCCHHHh------------C--EEE
Confidence 3468999999999999999743 344459999999999983 4444555443 3 456
Q ss_pred ecCccccCCCCceEEEEEecCHHHHHHHH-------------hccccCCCChHHHHHHHHHhCCchHHHHH--HHHHHHH
Q 044773 88 YSLSKDLGLPGFRVGAIYSNDDTVVAAAT-------------KMSSFGLVSSQTQYLLSALLSDKKFAQNY--ISENKKR 152 (289)
Q Consensus 88 ~s~sK~~g~~G~r~G~i~~~~~~~~~~~~-------------~~~~~~~~~~~~q~~~~~~l~~~~~~~~~--~~~~~~~ 152 (289)
.|..|.+|.+| +|.++++++.+...-. .....+++|.....++.++++. +.++ ++.+.++
T Consensus 189 ss~~K~lGP~G--~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Tpn~~~i~~L~aal~~---l~~~gg~e~i~~~ 263 (355)
T cd00611 189 AGAQKNLGPAG--VTVVIVRKDLLGKARKITPSMLNYKTHADNNSLYNTPPTFAIYMMGLVLKW---LKEQGGVEAMEKR 263 (355)
T ss_pred eecccccCCCc--eEEEEECHHHHhhcccCCCCcccHHHHHhcCCCCCCChHHHHHHHHHHHHH---HHHcCCHHHHHHH
Confidence 76899998666 8899886655432111 1111233444455555555553 2333 6788899
Q ss_pred HHHHHHHHHHHHHhc-CCc-ee-cC--CceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEE
Q 044773 153 LKQRHRKLVSGLEKA-GIS-CL-KS--NAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRV 227 (289)
Q Consensus 153 ~~~~~~~l~~~l~~~-g~~-~~-~~--~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ri 227 (289)
.++..+++++.|+++ |+. .. .+ ..+..+.+.++.. . .+ .++...+ .+.|+...++.. ..+.+|+
T Consensus 264 ~~~l~~~l~~~l~~~~gl~~~~~~~~~rs~~vvsf~~~~~--~---l~-~~~~~~~-~r~G~~~~~~~~----~~g~vR~ 332 (355)
T cd00611 264 NRQKAQLLYDTIDNSNGFYRGPVDKRARSRMNVPFRLGKE--E---LE-KEFLKEA-EAAGMIGLKGHR----SVGGIRA 332 (355)
T ss_pred HHHHHHHHHHHHHhCccccccCCCHHHcCceEEEEEcCCh--h---hh-HHHHHHH-HHCCCcccCCCc----ccCeEEE
Confidence 999999999999998 752 21 11 1223344555542 0 11 2233444 467998665543 2368999
Q ss_pred EEec-CCHHHHHHHHHHHHHHH
Q 044773 228 CFAN-MSEDTLKLSMQRLKAFV 248 (289)
Q Consensus 228 s~~~-~~~e~l~~~l~~l~~~l 248 (289)
|+.. ++.+|++.+++.|+++.
T Consensus 333 S~~~~nt~edi~~l~~al~~~~ 354 (355)
T cd00611 333 SIYNALSLEGVQALADFMKEFQ 354 (355)
T ss_pred EccCCCCHHHHHHHHHHHHHHh
Confidence 9965 79999999999998753
No 324
>PRK05613 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=99.22 E-value=3.4e-09 Score=97.71 Aligned_cols=77 Identities=17% Similarity=0.203 Sum_probs=58.8
Q ss_pred CCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEec
Q 044773 10 LKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVYS 89 (289)
Q Consensus 10 ~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~s 89 (289)
+++++|++.+|.||+|.+.+ +++|.++|+++|+++|+|.++... ....+ .++ +-++++.|
T Consensus 154 ~~tk~V~~e~~~Np~~~v~d---i~~I~~la~~~gi~livD~t~a~g----~~~~p-~~~------------GaDivv~S 213 (437)
T PRK05613 154 PNTKAFFGETFANPQADVLD---IPAVAEVAHRNQVPLIVDNTIATA----ALVRP-LEL------------GADVVVAS 213 (437)
T ss_pred ccCeEEEEECCCCCCCcccC---HHHHHHHHHHcCCeEEEECCCccc----cccCh-HHh------------CCCEEEee
Confidence 56899999999999999888 999999999999999999999642 11111 122 45689999
Q ss_pred CccccCCCCceEEEEEe
Q 044773 90 LSKDLGLPGFRVGAIYS 106 (289)
Q Consensus 90 ~sK~~g~~G~r~G~i~~ 106 (289)
++|.++..|.-+|-+++
T Consensus 214 ~~K~l~G~gd~~gG~vv 230 (437)
T PRK05613 214 LTKFYTGNGSGLGGVLI 230 (437)
T ss_pred ccceecCCCcceeEEEE
Confidence 99999755654454444
No 325
>PLN02414 glycine dehydrogenase (decarboxylating)
Probab=99.21 E-value=3.3e-09 Score=105.50 Aligned_cols=226 Identities=14% Similarity=0.096 Sum_probs=143.3
Q ss_pred hHHHhhhC-CCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCC
Q 044773 2 YQLAQKRH-LKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEV 80 (289)
Q Consensus 2 l~~~~~~~-~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 80 (289)
+++++..+ +++++|++++|+|-+|...+ +++|.++|+++|+.+++|-++.-- ..+. .... .
T Consensus 656 L~~~i~~~~~~ta~V~vt~pSn~gg~e~~---I~eI~~iah~~Galv~vDgAq~~a-~~~l--~~p~------------~ 717 (993)
T PLN02414 656 LRKAAEAHKDNLAALMVTYPSTHGVYEEG---IDEICDIIHDNGGQVYMDGANMNA-QVGL--TSPG------------F 717 (993)
T ss_pred HHHHHhccCCCeEEEEEECCCccccccch---HHHHHHHHHHcCCEEEEEecCHHh-ccCc--CCcc------------c
Confidence 44555543 26899999999999998877 999999999999999999999631 1111 1111 2
Q ss_pred CCceEEEecCccccC----CCCceEEEEEecCHHHHHHHHhc------------cc--cCCCC--h----HHHHHHHHHh
Q 044773 81 WNRVHIVYSLSKDLG----LPGFRVGAIYSNDDTVVAAATKM------------SS--FGLVS--S----QTQYLLSALL 136 (289)
Q Consensus 81 ~~~~i~i~s~sK~~g----~~G~r~G~i~~~~~~~~~~~~~~------------~~--~~~~~--~----~~q~~~~~~l 136 (289)
.+-+++++|.+|+|+ .+|-.+|++.+++ .+...+-.. .. .+..+ + +....+..++
T Consensus 718 ~GaD~~~~s~HK~f~~P~G~GGPg~G~l~~~~-~L~p~lPg~~v~~~~~~~~r~~~s~iGt~~~a~~g~al~l~~A~~yi 796 (993)
T PLN02414 718 IGADVCHLNLHKTFCIPHGGGGPGMGPIGVKK-HLAPFLPSHPVVPTGGIPRPEKTQPLGTISAAPWGSALILPISYTYI 796 (993)
T ss_pred cCCCEEEecCCccCCcCcccCCCCeeeEEEch-hhcccCCCCccccCCCcccccCCCCcCCccchhhhhHHHHHHHHHHH
Confidence 366799999999775 2345699998854 333221100 00 11111 1 2222233333
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCceecCCceEE--EEEecCccccCCChhhHHHHHHHHHHhcCeEEeC
Q 044773 137 SDKKFAQNYISENKKRLKQRHRKLVSGLEKA-GISCLKSNAGLF--CWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISP 213 (289)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~~~~~~~g~~--~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~p 213 (289)
.... .+-+++..++...+.+++.+.|.+. ++.+..+.+.++ ..+++........ .+..++++.|+ ++||...-
T Consensus 797 ~~lG--~~Gl~~~a~~a~~nAnYl~~rL~~~~~~~~~~~~~~~~hEfv~~~~~l~~~~g-~~~~di~krL~-d~Gihapt 872 (993)
T PLN02414 797 AMMG--SEGLTDASKIAILNANYMAKRLEGHYPVLFRGKNGTCAHEFIIDLRPFKNTAG-IEPEDVAKRLM-DYGFHAPT 872 (993)
T ss_pred HHHC--HhHHHHHHHHHHHHHHHHHHHHHhhCCccccCCCCCeeeeEEEeccccccccC-CCHHHHHHHHH-HcCcEEee
Confidence 3321 4457777888899999999999774 444444443211 2234442111111 22356888888 88997543
Q ss_pred CCCCCCCCCCeEEEEEec-CCHHHHHHHHHHHHHHHHHHHH
Q 044773 214 GSSCHCTEPGWFRVCFAN-MSEDTLKLSMQRLKAFVDSITT 253 (289)
Q Consensus 214 g~~f~~~~~~~~Ris~~~-~~~e~l~~~l~~l~~~l~~~~~ 253 (289)
..| +..+.+||++.. .+.+|+|+++++|..+.++...
T Consensus 873 -~~~--pv~~~lmiepTE~~skeelDrf~~al~~i~~e~~~ 910 (993)
T PLN02414 873 -MSW--PVPGTLMIEPTESESKAELDRFCDALISIREEIAD 910 (993)
T ss_pred -ecc--ccCCEEEEEeeeeCCHHHHHHHHHHHHHHHHHHHH
Confidence 334 347789999954 7999999999999998887664
No 326
>PRK15029 arginine decarboxylase; Provisional
Probab=99.21 E-value=1e-09 Score=106.17 Aligned_cols=157 Identities=11% Similarity=0.013 Sum_probs=99.8
Q ss_pred hHHHhhhCCCcc--------EEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhcc
Q 044773 2 YQLAQKRHLKVK--------GVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDR 73 (289)
Q Consensus 2 l~~~~~~~~~~~--------~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~ 73 (289)
++++++++|.+| ++++++|+. -|.+.+ +++|+++|+++++.|++||||..+..-.+.++....+..+
T Consensus 295 i~~~l~~~p~~k~~~~~~~~avvlt~PTY-~Gv~~d---i~~I~~~~h~~~~~llvDEAhGah~~F~~~~p~~sa~~~~- 369 (755)
T PRK15029 295 LQKKISESPLTKDKAGQKPSYCVVTNCTY-DGVCYN---AKEAQDLLEKTSDRLHFDEAWYGYARFNPIYADHYAMRGE- 369 (755)
T ss_pred HHHHHHhCchhhhccccCceEEEEECCCC-cceeeC---HHHHHHHHHhcCCeEEEECccccccccCcccccccccccc-
Confidence 567777777777 999999966 599988 9999999999999999999998763222322211111000
Q ss_pred ccccCCCCCc-eEEEecCccccCCCCceEEEEEecCH--HH-HHHHHhccccCCCChHHHHHHHHHhCCchHHHH-HHHH
Q 044773 74 NCENTEVWNR-VHIVYSLSKDLGLPGFRVGAIYSNDD--TV-VAAATKMSSFGLVSSQTQYLLSALLSDKKFAQN-YISE 148 (289)
Q Consensus 74 ~~~~~d~~~~-~i~i~s~sK~~g~~G~r~G~i~~~~~--~~-~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~-~~~~ 148 (289)
.....+- ++++.|.+|+++ +=.+.+++...+. .+ .+.++........++++...++.+-....+++. ..++
T Consensus 370 ---~~~~~Gad~~vvqStHKtL~-alTQaS~LHv~~~~~~id~~r~~~~l~~~qSTSPSY~LmASLD~ar~~m~~~~G~~ 445 (755)
T PRK15029 370 ---PGDHNGPTVFATHSTHKLLN-ALSQASYIHVREGRGAINFSRFNQAYMMHATTSPLYAICASNDVAVSMMDGNSGLS 445 (755)
T ss_pred ---ccccCCCceEEEEchhhccc-chhhhhhheeCCCccccCHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHhhhhhHH
Confidence 0000123 488999999995 3344566666443 22 244554444444666777777777665555443 4555
Q ss_pred HHHHHHHHHHHHHHHHHhc
Q 044773 149 NKKRLKQRHRKLVSGLEKA 167 (289)
Q Consensus 149 ~~~~~~~~~~~l~~~l~~~ 167 (289)
..+.+.+....+++.+.+.
T Consensus 446 l~~~~i~~~~~~r~~l~~~ 464 (755)
T PRK15029 446 LTQEVIDEAVDFRQAMARL 464 (755)
T ss_pred HHHHHHHHHHHHHHHHHhc
Confidence 6666666666677777554
No 327
>COG0112 GlyA Glycine/serine hydroxymethyltransferase [Amino acid transport and metabolism]
Probab=99.18 E-value=3.4e-09 Score=93.15 Aligned_cols=223 Identities=12% Similarity=0.098 Sum_probs=145.0
Q ss_pred hHHHhhhCCCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCC-CCccCCCCccChhhhhhccccccCCC
Q 044773 2 YQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYS-GTVFSSPGFVSIMEILKDRNCENTEV 80 (289)
Q Consensus 2 l~~~~~~~~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~-~~~~~~~~~~~~~~~~~~~~~~~~d~ 80 (289)
+++..... +||+|+.-....| ..++ .+++.++|.+-|+++++|-+|- ++.-+|..+.++.
T Consensus 158 ~~k~a~e~-kPK~ii~G~SaY~--r~id---~~~~reIad~VGA~L~~DmAHiaGLVA~G~~p~P~~------------- 218 (413)
T COG0112 158 VEKLAKEV-KPKLIIAGGSAYS--RPID---FKRFREIADEVGAYLMVDMAHVAGLIAGGVHPNPLP------------- 218 (413)
T ss_pred HHHHHHHh-CCCEEEECccccc--cccC---HHHHHHHHHHhCceEEehHHHHHHHHhcccCCCCCC-------------
Confidence 34555555 8999776643332 2344 8999999999999999999994 3333343333321
Q ss_pred CCceEEEecCccccCCCCceEEEEEecCHHHHHHHHhccc-cCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHH
Q 044773 81 WNRVHIVYSLSKDLGLPGFRVGAIYSNDDTVVAAATKMSS-FGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRK 159 (289)
Q Consensus 81 ~~~~i~i~s~sK~~g~~G~r~G~i~~~~~~~~~~~~~~~~-~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 159 (289)
.-.++.+|.+|+| .|-|-|.|+++++.+.+.++..-- -...+++.-.+++.+....+.++...++-.++.-.+.+.
T Consensus 219 -~AdvVTtTTHKTl--rGPrGG~Il~~~eel~kkin~aVFPg~qggpl~HviAakaVa~~Eal~p~fk~Ya~qVv~NAka 295 (413)
T COG0112 219 -HADVVTTTTHKTL--RGPRGGIILTNDEELAKKINSAVFPGLQGGPLMHVIAAKAVAFKEALEPEFKEYAKQVVKNAKA 295 (413)
T ss_pred -ccceEeCCcccCC--CCCCceEEEeccHHHHHHhhhhcCCccCCChHHHHHHHHHHHHHHHcChhHHHHHHHHHHHHHH
Confidence 2348899999998 555669999987777777765422 222444443333333332222244456677778888999
Q ss_pred HHHHHHhcCCceecCCc-eEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEe-CCCCCC---CCCCCeEEEEEec---
Q 044773 160 LVSGLEKAGISCLKSNA-GLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNIS-PGSSCH---CTEPGWFRVCFAN--- 231 (289)
Q Consensus 160 l~~~l~~~g~~~~~~~~-g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~-pg~~f~---~~~~~~~Ris~~~--- 231 (289)
|.+.|.+.|+++...-+ +-.+.+++....-. -+.++.++++.||.+. .+..|. +..+..+||....
T Consensus 296 LAe~l~~~G~~vvsGgTdnHl~lVDl~~~~~~------Gk~ae~~L~~~~It~NKN~iP~D~~~p~~tSGIRiGtpa~Tt 369 (413)
T COG0112 296 LAEALKERGFKVVSGGTDNHLVLVDLRSKGLT------GKKAEAALERAGITVNKNAIPFDPESPFVTSGIRIGTPAVTT 369 (413)
T ss_pred HHHHHHHcCCeEecCCccceEEEEEcccCCCC------HHHHHHHHHHcCEeeccCCCCCCCCCCCCCccceeccHHHhh
Confidence 99999999998875332 44566777732111 2577788889999985 333333 3345789999843
Q ss_pred --CCHHHHHHHHHHHHHHHHHHH
Q 044773 232 --MSEDTLKLSMQRLKAFVDSIT 252 (289)
Q Consensus 232 --~~~e~l~~~l~~l~~~l~~~~ 252 (289)
..++|+++..+.+.+++....
T Consensus 370 rG~~e~e~~~Ia~~I~~vl~~~~ 392 (413)
T COG0112 370 RGFGEAEMEEIADLIADVLDGLK 392 (413)
T ss_pred cCCCHHHHHHHHHHHHHHHhccc
Confidence 356788888888888877544
No 328
>PRK06434 cystathionine gamma-lyase; Validated
Probab=99.17 E-value=5.6e-09 Score=94.72 Aligned_cols=128 Identities=13% Similarity=0.188 Sum_probs=82.7
Q ss_pred CccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEecC
Q 044773 11 KVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVYSL 90 (289)
Q Consensus 11 ~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~s~ 90 (289)
++++|++.+|+|||+.+.+ +++|.++|++++ +++|.++... +.+.+. . .+-++++.|.
T Consensus 148 ~tklv~~e~~snpt~~v~D---i~~I~~la~~~~--lvVD~t~~s~-~~~~pl----~------------~gaDivv~S~ 205 (384)
T PRK06434 148 NYDLIYAESITNPTLKVPD---IKNVSSFCHEND--VIVDATFASP-YNQNPL----D------------LGADVVIHSA 205 (384)
T ss_pred CeeEEEEEcCCCCCceeec---HHHHHHHHHHcC--eEEECCCCCc-ccCCch----h------------cCCCEEEeec
Confidence 6899999999999999877 999999999998 4669998532 222221 1 1455889999
Q ss_pred ccccCCCC-ceEEEEEecCHHHHHHHHhcc-ccCC-CChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 044773 91 SKDLGLPG-FRVGAIYSNDDTVVAAATKMS-SFGL-VSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEKA 167 (289)
Q Consensus 91 sK~~g~~G-~r~G~i~~~~~~~~~~~~~~~-~~~~-~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 167 (289)
+|.++.+| .=.|.++++++.+.+.+.... .++. .+++.-..+..-++. +..+.++..++.+.+.+.|+++
T Consensus 206 tK~i~G~~d~~gG~vv~~~~~~~~~~~~~~~~~G~~~~~~~A~l~~~gL~t-------L~~R~~r~~~~a~~~a~~L~~~ 278 (384)
T PRK06434 206 TKYISGHSDVVMGVAGTNNKSIFNNLVERRKTLGSNPDPIQAYLALRGLKT-------LGLRMEKHNKNGMELARFLRDS 278 (384)
T ss_pred ccccCCCCCceEEEEecCcHHHHHHHHHHHHhcCCCCCHHHHHHHHhCCCc-------HHHHHHHHHHHHHHHHHHHHcC
Confidence 99997434 445788786666655544332 2332 233322222222332 3445555667777778888776
No 329
>KOG1549 consensus Cysteine desulfurase NFS1 [Amino acid transport and metabolism]
Probab=99.15 E-value=1.3e-09 Score=97.35 Aligned_cols=83 Identities=23% Similarity=0.308 Sum_probs=72.1
Q ss_pred HHHhhhCCCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCC
Q 044773 3 QLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWN 82 (289)
Q Consensus 3 ~~~~~~~~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 82 (289)
+++++ ++++++.+...+|-+|+++| +++|+++|+++++.+++|.+|+- |.-..++.++ +
T Consensus 175 ~~~i~--~~T~lv~I~~Vnn~~gv~~P---v~EI~~icr~~~v~v~~DaAQav----G~i~vDV~el------------n 233 (428)
T KOG1549|consen 175 REAIR--SKTRLVSIMHVNNEIGVLQP---VKEIVKICREEGVQVHVDAAQAV----GKIPVDVQEL------------N 233 (428)
T ss_pred HHhcC--CCceEEEEEecccCcccccc---HHHHHHHhCcCCcEEEeehhhhc----CCccccHHHc------------C
Confidence 44444 68999999999999999999 99999999999999999999983 6666777777 5
Q ss_pred ceEEEecCccccCCCCceEEEEEecC
Q 044773 83 RVHIVYSLSKDLGLPGFRVGAIYSND 108 (289)
Q Consensus 83 ~~i~i~s~sK~~g~~G~r~G~i~~~~ 108 (289)
.+++..|.+|.+|.+| +|++.++.
T Consensus 234 ~D~~s~s~HK~ygp~~--iGaLYvr~ 257 (428)
T KOG1549|consen 234 ADFLSISAHKIYGPPG--IGALYVRR 257 (428)
T ss_pred chheeeecccccCCCc--ceEEEEcc
Confidence 6688999999999888 99999964
No 330
>PRK02769 histidine decarboxylase; Provisional
Probab=99.12 E-value=1.5e-08 Score=91.98 Aligned_cols=209 Identities=11% Similarity=0.058 Sum_probs=131.8
Q ss_pred hHHHhhhC-CCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcC---CEEEEecCCCCCccCCCCccChhhhhhcccccc
Q 044773 2 YQLAQKRH-LKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKN---IHLISDEIYSGTVFSSPGFVSIMEILKDRNCEN 77 (289)
Q Consensus 2 l~~~~~~~-~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~---~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (289)
+++++..+ .++.+|+++.++|+||.+-+ +++|.++|+++| +++.+|.+|++....-.........
T Consensus 150 L~~~i~~~~~~t~lvv~t~gtt~tG~idp---i~~I~~i~~~~g~~~~~lHVDaA~gg~~~p~~~~~~~~d~-------- 218 (380)
T PRK02769 150 LISKIKENKNQPPIIFANIGTTMTGAIDN---IKEIQEILKKIGIDDYYIHADAALSGMILPFVNNPPPFSF-------- 218 (380)
T ss_pred HHHHHHhCCCCcEEEEEEeCCCCCcccCC---HHHHHHHHHHhCCCceEEEEEecccceeecccCccccCCc--------
Confidence 45555542 34788899999999999999 899999999998 6999999998643321110000111
Q ss_pred CCCCCceEEEecCccccCCCCceEEEEEecCHHHHHHHH---h---cccc--CCCChHHHHHHHHHhCCchHHHHHHHHH
Q 044773 78 TEVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDTVVAAAT---K---MSSF--GLVSSQTQYLLSALLSDKKFAQNYISEN 149 (289)
Q Consensus 78 ~d~~~~~i~i~s~sK~~g~~G~r~G~i~~~~~~~~~~~~---~---~~~~--~~~~~~~q~~~~~~l~~~~~~~~~~~~~ 149 (289)
..+.+.+..|.+|.++ ....+|.++.+++.+..... . .... ++-+......+...+.... ..-.++.
T Consensus 219 --~~~vDsis~s~HK~~~-~P~g~G~l~~r~~~~~~~~~~~~yl~~~d~t~~GSR~g~~~l~lw~aL~~lg--~~G~~~~ 293 (380)
T PRK02769 219 --ADGIDSIAISGHKFIG-SPMPCGIVLAKKKYVERISVDVDYIGSRDQTISGSRNGHTALLLWAAIRSLG--SKGLRQR 293 (380)
T ss_pred --cCCCCEEEECCcccCC-CCCCcEEEEEehhhhhhcccCccccCCCCCCccCCCCcHHHHHHHHHHHHHC--HHHHHHH
Confidence 1145678899999887 44668999997655433211 0 0101 1112234445555555432 3336777
Q ss_pred HHHHHHHHHHHHHHHHhcCCceecCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEE
Q 044773 150 KKRLKQRHRKLVSGLEKAGISCLKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCF 229 (289)
Q Consensus 150 ~~~~~~~~~~l~~~l~~~g~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ris~ 229 (289)
.++..+..+++.+.|++.|++.........+.++.+. .++ .+...+...+ .++|+++
T Consensus 294 ~~~~~~la~~l~~~L~~~g~~~~~~p~~~~v~f~~~~----------~~~----~~~w~l~~~~---------~~~hi~~ 350 (380)
T PRK02769 294 VQHCLDMAQYAVDRLQANGIPAWRNPNSITVVFPCPS----------ERI----WKKWHLATSG---------NQAHIIT 350 (380)
T ss_pred HHHHHHHHHHHHHHHHhCCCEEEcCCCceEEEEcCCC----------HHH----HhCeeEcccC---------CEEEEEE
Confidence 8888899999999998888876654443444443331 112 2344444332 3789999
Q ss_pred e-cCCHHHHHHHHHHHHHHHH
Q 044773 230 A-NMSEDTLKLSMQRLKAFVD 249 (289)
Q Consensus 230 ~-~~~~e~l~~~l~~l~~~l~ 249 (289)
. .++.+.++..++.|...+.
T Consensus 351 ~~~~~~~~~~~f~~dl~~~~~ 371 (380)
T PRK02769 351 MPHHNKQQIDSLIDELIFDLK 371 (380)
T ss_pred CCCCCHHHHHHHHHHHHHHHh
Confidence 4 4688889999988877665
No 331
>KOG1401 consensus Acetylornithine aminotransferase [Amino acid transport and metabolism]
Probab=99.12 E-value=1.1e-08 Score=90.09 Aligned_cols=219 Identities=16% Similarity=0.136 Sum_probs=131.3
Q ss_pred hHHHhhhCCC-ccEEEEeCC-CCCCccCC-CHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccC
Q 044773 2 YQLAQKRHLK-VKGVLVTNP-SNPLGTTM-SRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENT 78 (289)
Q Consensus 2 l~~~~~~~~~-~~~i~l~~p-~NPtG~~~-~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (289)
++++++.+.+ +-+ +|..| +.-.|..+ .++.+..|.+.|.++++++|.||++.+++..|... ..+++
T Consensus 196 l~k~~~~h~~~IaA-VIvEPiqGaGG~~p~~peFl~~L~k~C~~~~vl~I~DEV~tG~gR~g~~~--a~e~~-------- 264 (433)
T KOG1401|consen 196 LEKLFESHKGEIAA-VIVEPIQGAGGIIPADPEFLIGLRKECDDNGVLLIFDEVQTGLGRLGYGW--AQEYF-------- 264 (433)
T ss_pred HHHHHHhCCCceEE-EEEecccCCCCcccCCHHHHHHHHHHHhhcCceEEeehhhhCccccchHH--HHHHh--------
Confidence 5777877753 445 55557 66666654 67789999999999999999999999876655532 22222
Q ss_pred CCCCceEEEecCccccCCCCceEEEEEecCHHHHHHHHhcc-----ccCCCChHHHHHHHHHhCCchHHHHHHHHHHHHH
Q 044773 79 EVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDTVVAAATKMS-----SFGLVSSQTQYLLSALLSDKKFAQNYISENKKRL 153 (289)
Q Consensus 79 d~~~~~i~i~s~sK~~g~~G~r~G~i~~~~~~~~~~~~~~~-----~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~ 153 (289)
.....+.++.|.++ .|+++|..++++ .+.+.+.-.. +.+..|++...+....+....- .++++...+.-
T Consensus 265 ---~~~PDI~t~aK~L~-gGlPigA~~v~~-kV~~~i~~~~~l~hg~Tf~gnpLacsa~~~~l~~l~~-~e~~k~vs~~~ 338 (433)
T KOG1401|consen 265 ---GVTPDITTVAKPLG-GGLPIGATGVRD-KVAEMISPGDHLYHGGTFSGNPLACSAGIKVLDELKD-PETLKNVSKIG 338 (433)
T ss_pred ---CcCCcceeehhhcc-CCceeEEEeehH-HHHhhcCCCCccccCcccCCChhhhhHHHHHHHHHcC-HHHHHHHHHHH
Confidence 23344788999998 999999999954 4444443221 1233778887777766654332 55567777777
Q ss_pred HHHHHHHHHHHHhcCCceec-CCceEEEEEecCccccCCChhhHHH--------HHHHHHHhcCeEEeCCCCCCCCCCCe
Q 044773 154 KQRHRKLVSGLEKAGISCLK-SNAGLFCWVDMRHLLSSNTFEAEME--------LWKKIVYDVKLNISPGSSCHCTEPGW 224 (289)
Q Consensus 154 ~~~~~~l~~~l~~~g~~~~~-~~~g~~~~i~~~~~~~~~~~~~~~~--------~~~~ll~~~gi~v~pg~~f~~~~~~~ 224 (289)
+..++.+.+.+.+.+-.... ...|+++......+..+ +.+.-. ....++ +.|+.+.|-.
T Consensus 339 k~L~~~l~e~~~~~~~~i~g~~grgl~ig~~~~~p~~~--~~d~~~~~~ll~~~~~~~~~-~~gv~i~P~~--------- 406 (433)
T KOG1401|consen 339 KELRKLLDEYLKKTPNSICGGVGRGLVIGFEFEGPVYK--FADAAREQGLLILTLGKGLL-EEGVRIAPIY--------- 406 (433)
T ss_pred HHHHHHHHHHhccCCCceeeeeeeEEEEEEEEeechhh--hhhhhhhhhHHHHHHhcccc-cceEEEeccc---------
Confidence 77777788887765222222 33344444443333221 011101 111112 2244444400
Q ss_pred EEEEEecCCHHHHHHHHHHHHHHHHHH
Q 044773 225 FRVCFANMSEDTLKLSMQRLKAFVDSI 251 (289)
Q Consensus 225 ~Ris~~~~~~e~l~~~l~~l~~~l~~~ 251 (289)
-++.. .++|.++.+++.+.+.+...
T Consensus 407 -~l~~~-~~~E~i~~~l~i~~~~l~~~ 431 (433)
T KOG1401|consen 407 -LLTVE-HTPEVIQRLLTILEKVLSAL 431 (433)
T ss_pred -ccccc-CcHHHHHHHHHHHHHHHHHh
Confidence 01122 35888888888888877654
No 332
>PF01276 OKR_DC_1: Orn/Lys/Arg decarboxylase, major domain; InterPro: IPR000310 Pyridoxal-dependent decarboxylases are bacterial proteins acting on ornithine, lysine, arginine and related substrates []. One of the regions of sequence similarity contains a conserved lysine residue, which is the site of attachment of the pyridoxal-phosphate group.; GO: 0003824 catalytic activity; PDB: 1C4K_A 1ORD_A 2X3L_B 3Q16_C 3N75_A 2VYC_D.
Probab=99.11 E-value=3.1e-10 Score=102.77 Aligned_cols=163 Identities=17% Similarity=0.140 Sum_probs=101.8
Q ss_pred hHHHhhhCCCccE---EEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccC
Q 044773 2 YQLAQKRHLKVKG---VLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENT 78 (289)
Q Consensus 2 l~~~~~~~~~~~~---i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (289)
++++++++|..|+ +++++|+. -|.+.+ +++|+++|++++..|++||||..+..-..-+.+...+-.+ .
T Consensus 156 i~~~l~~~p~~k~~~~vvlt~PTY-~Gv~~d---i~~I~~~~h~~~~~llvDEAhGah~~F~~lp~~a~~~gad-----~ 226 (417)
T PF01276_consen 156 IEEALKEHPDAKAPRLVVLTSPTY-YGVCYD---IKEIAEICHKHGIPLLVDEAHGAHFGFHPLPRSALALGAD-----R 226 (417)
T ss_dssp HHHHHHHCTTCHCESEEEEESS-T-TSEEE----HHHHHHHHCCTECEEEEE-TT-TTGGCSGGGTTCSSTTSS------
T ss_pred HHHHHHhCccccCceEEEEeCCCC-CeEEEC---HHHHHHHhcccCCEEEEEccccccccCCCCccchhhccCc-----c
Confidence 6788888888777 99999966 599988 9999999999999999999998762222222222222111 0
Q ss_pred CCCCceEEEecCccccCCCCceEEEEEecCHH-H-HHHHHhccccCCCChHHHHHHHHHhCCchHH-HHHHHHHHHHHHH
Q 044773 79 EVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDT-V-VAAATKMSSFGLVSSQTQYLLSALLSDKKFA-QNYISENKKRLKQ 155 (289)
Q Consensus 79 d~~~~~i~i~s~sK~~g~~G~r~G~i~~~~~~-~-~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~-~~~~~~~~~~~~~ 155 (289)
.....++++.|++|+++ +=.+.+++..+... + .+.++........++++...++.+-....++ ....+++.+...+
T Consensus 227 ~~~~~~~vvqS~HKtL~-altQts~lh~~~~~~v~~~~~~~~l~~~~TTSPSY~lmASlD~a~~~m~~~~G~~l~~~~i~ 305 (417)
T PF01276_consen 227 PNDPGIIVVQSTHKTLP-ALTQTSMLHVKGDRIVDHERVNEALSMHQTTSPSYPLMASLDVARAQMEEEEGRELLEEAIE 305 (417)
T ss_dssp CTSBEEEEEEEHHHHSS-S-TT-EEEEEETCCCTTHHHHHHHHHHHS-SS--HHHHHHHHHHHHHHSHHHHHHHHHHHHH
T ss_pred ccccceeeeechhhccc-ccccceEEEecCCCcccHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhhHHHHHHHHH
Confidence 12345688999999996 54667888876653 2 3444444444445666777666666655554 4556667777777
Q ss_pred HHHHHHHHHH---hc-CCceecC
Q 044773 156 RHRKLVSGLE---KA-GISCLKS 174 (289)
Q Consensus 156 ~~~~l~~~l~---~~-g~~~~~~ 174 (289)
+.+.+++.++ +. ++++..+
T Consensus 306 ~a~~~R~~i~~~~~~~~~~~~~~ 328 (417)
T PF01276_consen 306 LAEEFRKKINRLNDIWGFKVLGP 328 (417)
T ss_dssp HHHHHHHHHHHHCCT-SSEESS-
T ss_pred HHHHHHHHHHhcCCCceEecCCc
Confidence 7777888873 33 5555444
No 333
>PRK11658 UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase; Provisional
Probab=99.11 E-value=6.3e-09 Score=94.68 Aligned_cols=208 Identities=10% Similarity=0.114 Sum_probs=109.4
Q ss_pred CCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCC-CccCCCCccChhhhhhccccccCCCCCceEEEe
Q 044773 10 LKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSG-TVFSSPGFVSIMEILKDRNCENTEVWNRVHIVY 88 (289)
Q Consensus 10 ~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~-~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~ 88 (289)
+++|+|+ |+||+|...+ +++|.++|+++|+++|+|++|+. ..+.+... . ..+. .+.
T Consensus 120 ~~tkav~---~~~~~G~~~d---~~~i~~~a~~~gi~vi~D~a~a~g~~~~~~~~-------g--------~~g~--~~~ 176 (379)
T PRK11658 120 PRTKAII---PVHYAGAPAD---LDAIRAIGERYGIPVIEDAAHAVGTYYKGRHI-------G--------ARGT--AIF 176 (379)
T ss_pred cCCeEEE---EeCCCCCcCC---HHHHHHHHHHcCCeEEEECCCccCCeECCeec-------C--------CCCC--EEE
Confidence 5688876 5567899877 88999999999999999999983 22222111 1 1122 345
Q ss_pred cCccccCCCCceEEEEEecCHHHHHHHHhccccCCC-C--------------------hHHHHHHHHHhCCchHHHHHHH
Q 044773 89 SLSKDLGLPGFRVGAIYSNDDTVVAAATKMSSFGLV-S--------------------SQTQYLLSALLSDKKFAQNYIS 147 (289)
Q Consensus 89 s~sK~~g~~G~r~G~i~~~~~~~~~~~~~~~~~~~~-~--------------------~~~q~~~~~~l~~~~~~~~~~~ 147 (289)
||++.-.+++.+-|+++++++.+.+.++.....+.. + ......+.+++.-.+ ...+.
T Consensus 177 Sf~~~K~l~~g~GG~v~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~G~n~~~~~l~AAl~~~q--l~~l~ 254 (379)
T PRK11658 177 SFHAIKNITCAEGGLVVTDDDELADRLRSLKFHGLGVDAFDRQTQGRAPQAEVLTPGYKYNLADINAAIALVQ--LAKLE 254 (379)
T ss_pred eCCCCCcCcccCceEEEECCHHHHHHHHHHHHcCCCcchhhhhcccCCCcceeeccccccCcCHHHHHHHHHH--HHHHH
Confidence 555433334456799998777766555432211100 0 000011112222111 12244
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCc-eecCC----ceEEE-EEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCC--
Q 044773 148 ENKKRLKQRHRKLVSGLEKAGIS-CLKSN----AGLFC-WVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHC-- 219 (289)
Q Consensus 148 ~~~~~~~~~~~~l~~~l~~~g~~-~~~~~----~g~~~-~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~-- 219 (289)
+..++-++..+++.+.|.++++. +..+. ..+++ .+.++..... .+.+++.+.|. +.||.+.+. |.+
T Consensus 255 ~~~~~r~~~a~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~r~~~~~~L~-~~gI~~~~~--~~~~~ 328 (379)
T PRK11658 255 ALNARRREIAARYLQALADLPFQPLSLPAWPHQHAWHLFIIRVDEERCG---ISRDALMEALK-ERGIGTGLH--FRAAH 328 (379)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCccCcCCCCCCceeEEEEEEEECCcccc---CCHHHHHHHHH-HCCCCCccc--CcCcc
Confidence 44555555566667777765432 22221 12222 2334321111 12245777665 679876522 111
Q ss_pred ----------C---------CCCeEEEEEe-cCCHHHHHHHHHHHHHHH
Q 044773 220 ----------T---------EPGWFRVCFA-NMSEDTLKLSMQRLKAFV 248 (289)
Q Consensus 220 ----------~---------~~~~~Ris~~-~~~~e~l~~~l~~l~~~l 248 (289)
. ....+-+-+. ..++++++..++.+++++
T Consensus 329 ~~~~~~~~~~~~~~p~~~~~~~~~l~lP~~~~l~~~~~~~i~~~i~~~~ 377 (379)
T PRK11658 329 TQKYYRERFPTLSLPNTEWNSERICSLPLFPDMTDADVDRVITALQQIA 377 (379)
T ss_pred cChhhhccCCCCCChHHHHHHhCeEEccCCCCCCHHHHHHHHHHHHHHH
Confidence 0 0133554442 368999999999998864
No 334
>PF00464 SHMT: Serine hydroxymethyltransferase; InterPro: IPR001085 Synonym(s): Serine hydroxymethyltransferase, Serine aldolase, Threonine aldolase Serine hydroxymethyltransferase (SHMT) is a pyridoxal phosphate (PLP) dependent enzyme and belongs to the aspartate aminotransferase superfamily (fold type I) []. The pyridoxal-P group is attached to a lysine residue around which the sequence is highly conserved in all forms of the enzyme []. The enzyme carries out interconversion of serine and glycine using PLP as the cofactor. SHMT catalyses the transfer of a hydroxymethyl group from N5, N10- methylene tetrahydrofolate to glycine, resulting in the formation of serine and tetrahydrofolate. Both eukaryotic and prokaryotic SHMT enzymes form tight obligate homodimers and the mammalian enzyme forms a homotetramer [, ]. PLP dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalysed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis has revealed that the PLP dependent enzymes can be classified into four major groups of different evolutionary origin: aspartate aminotransferase superfamily (fold type I), tryptophan synthase beta superfamily (fold type II), alanine racemase superfamily (fold type III), D-amino acid superfamily (fold type IV) and glycogen phophorylase family (fold type V) [, ]. In vertebrates, glycine hydroxymethyltransferase exists in a cytoplasmic and a mitochondrial form whereas only one form is found in prokaryotes.; GO: 0004372 glycine hydroxymethyltransferase activity, 0006544 glycine metabolic process, 0006563 L-serine metabolic process; PDB: 3GBX_B 3H7F_A 1YJS_A 2VMW_A 2W7H_A 2W7E_A 2VMY_B 2W7L_A 2VMZ_A 2VMS_A ....
Probab=99.10 E-value=6.1e-09 Score=93.98 Aligned_cols=211 Identities=18% Similarity=0.177 Sum_probs=122.2
Q ss_pred hHHHhhhCCCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCC
Q 044773 2 YQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVW 81 (289)
Q Consensus 2 l~~~~~~~~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 81 (289)
+++..++. +||+|++...++|- .+ +.+++.++|.+.|+++++|-+|......+...++....
T Consensus 161 l~~~a~~~-kPklIi~G~S~y~~--~~---d~~~~reIad~vga~l~~D~sH~~GLIa~g~~~~P~~~------------ 222 (399)
T PF00464_consen 161 LEKLAKEH-KPKLIICGASSYPR--PI---DFKRFREIADEVGAYLMADISHIAGLIAGGLFPNPFPY------------ 222 (399)
T ss_dssp HHHHHHHH---SEEEEE-SSTSS--------HHHHHHHHHHTT-EEEEE-TTTHHHHHTTSS--GCCT------------
T ss_pred HHHHHhhc-CCCEEEECchhccC--cc---CHHHHHHHHHhcCcEEEecccccccceehheecCcccc------------
Confidence 45566666 89997777544431 23 48899999999999999999996432323333332222
Q ss_pred CceEEEecCccccCCCCceEEEEEec-------------CHHHHHHHHhcc-ccCCCCh--HHHHHHHHHhCCchHHHHH
Q 044773 82 NRVHIVYSLSKDLGLPGFRVGAIYSN-------------DDTVVAAATKMS-SFGLVSS--QTQYLLSALLSDKKFAQNY 145 (289)
Q Consensus 82 ~~~i~i~s~sK~~g~~G~r~G~i~~~-------------~~~~~~~~~~~~-~~~~~~~--~~q~~~~~~l~~~~~~~~~ 145 (289)
-+++.+|++|+| +|-|-|.|+++ ++.+.+.+.... +....++ -...+++.++.+. +...
T Consensus 223 -ADvvt~sThKtl--~GPrggiI~~~~~~~~~~~~~~~~~~~l~~~I~~avfP~~qg~~h~~~iaalAval~ea--~~~~ 297 (399)
T PF00464_consen 223 -ADVVTGSTHKTL--RGPRGGIILTNKGSKNVDKKGKEIDEELAEKIDSAVFPGLQGGPHMHRIAALAVALKEA--LSPE 297 (399)
T ss_dssp -SSEEEEESSGGG---SSS-EEEEES-SEEEE-TTS-EEEHHHHHHHHHHHTTTT-SS--HHHHHHHHHHHHHH--TSHH
T ss_pred -ceEEEeeccccc--cccCceEEEEcCCccccCCcccccHHHHHHHhccccCCCcccCcchhHHHHHHHHHhcc--cCHH
Confidence 238899999999 56667999997 467777776543 2222333 3333344444432 1334
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCceec-CCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEe----CCCCCCCC
Q 044773 146 ISENKKRLKQRHRKLVSGLEKAGISCLK-SNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNIS----PGSSCHCT 220 (289)
Q Consensus 146 ~~~~~~~~~~~~~~l~~~l~~~g~~~~~-~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~----pg~~f~~~ 220 (289)
.++-.++.-++.+.|.+.|.+.|+++.. ...+..+|+++....-. -..+...+++.||.+. |+. -.+.
T Consensus 298 fk~Ya~qVv~NAk~La~~L~~~G~~v~~ggTd~H~vlvd~~~~~~~------g~~a~~~Le~~gI~vnkn~iP~d-~~~~ 370 (399)
T PF00464_consen 298 FKEYAKQVVKNAKALAEALQERGFKVVTGGTDNHQVLVDLRSFGID------GKEAEKALEEAGIIVNKNTIPGD-RSPF 370 (399)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTT-EEGGGS-SSSEEEEEGGGGTS-------HHHHHHHHHHTTEE-EEE--TTT-STTT
T ss_pred HHHHHHHHHHHHHHHHHHHhhCCcEEEECCCCCCeEEEEecccccc------hHHHHHHHHhcCeeecccccCCC-CCCC
Confidence 5677777888999999999999998874 23355677888753211 2356667789999985 333 1112
Q ss_pred CCCeEEEEEec-----CCHHHHHHHHH
Q 044773 221 EPGWFRVCFAN-----MSEDTLKLSMQ 242 (289)
Q Consensus 221 ~~~~~Ris~~~-----~~~e~l~~~l~ 242 (289)
.+..+||+... ..++++++.-+
T Consensus 371 ~~sGlRlGT~~lT~rG~~e~dm~~iA~ 397 (399)
T PF00464_consen 371 VPSGLRLGTPALTRRGMKEEDMKEIAE 397 (399)
T ss_dssp T-SEEEEESHHHHHTT--HHHHHHHHH
T ss_pred CCCEEEECCHHHHhCCCCHHHHHHHHh
Confidence 24689999843 24556655443
No 335
>PRK11706 TDP-4-oxo-6-deoxy-D-glucose transaminase; Provisional
Probab=99.09 E-value=1.5e-08 Score=92.06 Aligned_cols=83 Identities=12% Similarity=0.220 Sum_probs=54.6
Q ss_pred CCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCc-cCCCCccChhhhhhccccccCCCCCceEEEe
Q 044773 10 LKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTV-FSSPGFVSIMEILKDRNCENTEVWNRVHIVY 88 (289)
Q Consensus 10 ~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~-~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~ 88 (289)
+++|+|+++| |+|...+ +++|.++|+++|++||+|++|+... +.+... ..+ ..+.+.
T Consensus 118 ~~tk~i~~~~---~~G~~~~---~~~i~~la~~~~i~vIeD~a~a~g~~~~~~~~---g~~-------------~~~~~~ 175 (375)
T PRK11706 118 PKTRAIVPVH---YAGVACE---MDTIMALAKKHNLFVVEDAAQGVMSTYKGRAL---GTI-------------GHIGCF 175 (375)
T ss_pred CCCeEEEEeC---CCCCccC---HHHHHHHHHHcCCEEEEECccccccccCCeee---ecC-------------cCEEEE
Confidence 4689988764 6898876 8899999999999999999998653 222211 111 113334
Q ss_pred cCc--cccCCCCceEEEEEecCHHHHHHHH
Q 044773 89 SLS--KDLGLPGFRVGAIYSNDDTVVAAAT 116 (289)
Q Consensus 89 s~s--K~~g~~G~r~G~i~~~~~~~~~~~~ 116 (289)
||+ |.++ +|.+.++++. ++.+.+.+.
T Consensus 176 Sf~~~K~l~-~g~gG~~~~~-~~~~~~~~~ 203 (375)
T PRK11706 176 SFHETKNYT-AGEGGALLIN-DPALIERAE 203 (375)
T ss_pred eCCCCcccc-ccCCeEEEEC-CHHHHHHHH
Confidence 444 9997 5766566654 556655443
No 336
>COG2873 MET17 O-acetylhomoserine sulfhydrylase [Amino acid transport and metabolism]
Probab=99.09 E-value=8.2e-09 Score=90.03 Aligned_cols=219 Identities=17% Similarity=0.220 Sum_probs=132.5
Q ss_pred CCCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEe
Q 044773 9 HLKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVY 88 (289)
Q Consensus 9 ~~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~ 88 (289)
++++|+|++.+-.||.+.+.+ ++.|.++|+++++.+|+|.-+...++ .... .++-+|++.
T Consensus 145 ~~nTkavf~EtigNP~~~v~D---ie~ia~iAh~~gvpliVDNT~atpyl-----~rP~------------~hGADIVvH 204 (426)
T COG2873 145 DENTKAVFAETIGNPGLDVLD---IEAIAEIAHRHGVPLIVDNTFATPYL-----CRPI------------EHGADIVVH 204 (426)
T ss_pred CcccceEEEEeccCCCccccC---HHHHHHHHHHcCCcEEEecCCCccee-----cchh------------hcCCCEEEE
Confidence 467999999999999999998 99999999999999999999975322 1111 335669999
Q ss_pred cCccccCCCCceEEEEEecCHHHHHHH-HhccccCC---------------CChHHHHHHHHHhCCc--------hHH--
Q 044773 89 SLSKDLGLPGFRVGAIYSNDDTVVAAA-TKMSSFGL---------------VSSQTQYLLSALLSDK--------KFA-- 142 (289)
Q Consensus 89 s~sK~~g~~G~r~G~i~~~~~~~~~~~-~~~~~~~~---------------~~~~~q~~~~~~l~~~--------~~~-- 142 (289)
|+||.+|..|.-+|=++.....+.... .++..+.. ...+...+-...+.+. .|+
T Consensus 205 S~TK~igGhGt~iGG~iVD~G~FDw~~~~rfP~~~~p~p~YhGl~~~~~~g~~af~~~~r~~~lRDlGa~lsPfnAfl~l 284 (426)
T COG2873 205 SATKYIGGHGTAIGGVIVDGGKFDWTANGRFPEFTTPDPSYHGLVYTETFGNAAFIIKARVQLLRDLGATLSPFNAFLLL 284 (426)
T ss_pred eecccccCCccccceEEEeCCccccccCCCCcccCCCCccccceehhhhcccHHHHHHHHHHHHHhcccccCcHHHHHHH
Confidence 999999888998988887544333221 11111100 0011111111122210 000
Q ss_pred --HHHHHHHHHHHHHHHHHHHHHHHhc-CCc------------------eecCCceEEEEEecCccccC-CChhhHHHHH
Q 044773 143 --QNYISENKKRLKQRHRKLVSGLEKA-GIS------------------CLKSNAGLFCWVDMRHLLSS-NTFEAEMELW 200 (289)
Q Consensus 143 --~~~~~~~~~~~~~~~~~l~~~l~~~-g~~------------------~~~~~~g~~~~i~~~~~~~~-~~~~~~~~~~ 200 (289)
.+.+.-+.++.-++...+.+.|+.+ .+. +.+...|-.+.+.+...... ..+.+..+++
T Consensus 285 qGlETL~LRmerH~~NA~~vA~~L~~HpkV~~V~YpgL~~~~~h~la~kyl~~g~g~vltF~~kgg~ea~~~fi~~l~L~ 364 (426)
T COG2873 285 QGLETLSLRMERHCENALKVAEFLENHPKVAWVNYPGLASHPYHALAKKYLPKGAGAVLTFGVKGGYEAGKKFIDALKLF 364 (426)
T ss_pred hchhhhHHHHHHHHHhHHHHHHHHhcCCCeeeeecCCCCCCcchhHHHhhccCCCceEEEEEecChHHHHHHHHHHHHHH
Confidence 2224445567777888889999887 221 22222333555666654221 2233444444
Q ss_pred HHHH---HhcCeEEeCCCCCCC-----------CCCCeEEEEEecCCHHHHHHHHHHHHHHHHH
Q 044773 201 KKIV---YDVKLNISPGSSCHC-----------TEPGWFRVCFANMSEDTLKLSMQRLKAFVDS 250 (289)
Q Consensus 201 ~~ll---~~~gi~v~pg~~f~~-----------~~~~~~Ris~~~~~~e~l~~~l~~l~~~l~~ 250 (289)
-.+. +.+-+.+.|.+.... ..++.+|+|++- |+++.++..|++++++
T Consensus 365 s~laNvGD~rsLvIHPAsTTH~ql~~ee~~~aGv~~~~IRlSVGI---Ed~~DiiaDl~qAl~~ 425 (426)
T COG2873 365 SHLANIGDARSLVIHPASTTHRQLSEEEQAAAGVTPDLIRLSVGI---EDIDDIIADLEQALEA 425 (426)
T ss_pred HhhccccccceeEecCcccchhcCCHHHHHhcCCCCCcEEEEecc---CCHHHHHHHHHHHHhc
Confidence 4332 233455667665442 125789999996 7788888888887764
No 337
>PLN02880 tyrosine decarboxylase
Probab=99.05 E-value=2.6e-08 Score=93.32 Aligned_cols=218 Identities=10% Similarity=0.052 Sum_probs=128.7
Q ss_pred EEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEecCccc
Q 044773 14 GVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVYSLSKD 93 (289)
Q Consensus 14 ~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~s~sK~ 93 (289)
+|+.+-.+-+||.+-+ +++|.++|+++|+++.+|-+|++.....+ .....+. +...-+.+..+++|.
T Consensus 242 ~vvataGTT~~GaiDp---l~eI~~i~~~~~iwlHVDaA~gg~~~~~~---~~~~~l~-------gie~aDSit~d~HKw 308 (490)
T PLN02880 242 FLCATVGTTSSTAVDP---LLELGKIAKSNGMWFHVDAAYAGSACICP---EYRHYID-------GVEEADSFNMNAHKW 308 (490)
T ss_pred EEEEecCCCcCcccCc---HHHHHHHHHHcCCEEEEehhhHHHHHhCH---HHHHHhc-------CchhcCEEEECchhh
Confidence 4444444778999988 99999999999999999999987533221 1122222 112345778999999
Q ss_pred cCCCCceEEEEEecCHHH-HHHHHhccccCC------------------C-ChHHHHHHHHHhCCchHHHHHHHHHHHHH
Q 044773 94 LGLPGFRVGAIYSNDDTV-VAAATKMSSFGL------------------V-SSQTQYLLSALLSDKKFAQNYISENKKRL 153 (289)
Q Consensus 94 ~g~~G~r~G~i~~~~~~~-~~~~~~~~~~~~------------------~-~~~~q~~~~~~l~~~~~~~~~~~~~~~~~ 153 (289)
++ ....+|.++.++... ...+.....|.. . .......+...++... .+-+++..+..
T Consensus 309 l~-~P~~~g~llvr~~~~l~~~~~~~~~Yl~~~~~~~~~~~~~~~~~i~~~rr~~alklw~~l~~~G--~~g~~~~i~~~ 385 (490)
T PLN02880 309 FL-TNFDCSLLWVKDRNALIQSLSTNPEFLKNKASQANSVVDYKDWQIPLGRRFRSLKLWMVLRLYG--VENLQSYIRNH 385 (490)
T ss_pred cC-CCccEEEEEEeCHHHHHHHHccCHHHhcCccccccCCCChhccCcCCCCcccHHHHHHHHHHhC--HHHHHHHHHHH
Confidence 96 668899999975432 222211111100 0 0011111211222211 23345555555
Q ss_pred HHHHHHHHHHHHhc-CCceecC-CceEEEEEecCccccCCChhh--HHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEE
Q 044773 154 KQRHRKLVSGLEKA-GISCLKS-NAGLFCWVDMRHLLSSNTFEA--EMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCF 229 (289)
Q Consensus 154 ~~~~~~l~~~l~~~-g~~~~~~-~~g~~~~i~~~~~~~~~~~~~--~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ris~ 229 (289)
-+..+++.+.+.+. ++++..+ +.++ +.++++.......-.+ ..++.++|.++..+.+.+... .+..++|+++
T Consensus 386 ~~lA~~~~~~l~~~~~~el~~~~~~~i-v~Fr~~~~~~~~~~~~~~n~~l~~~l~~~g~~~v~~t~~---~g~~~lR~~~ 461 (490)
T PLN02880 386 IKLAKEFEQLVAQDSRFEVVTPRIFSL-VCFRLVPPKNNEDNGNKLNHDLLDAVNSSGKIFISHTVL---SGKYVLRFAV 461 (490)
T ss_pred HHHHHHHHHHHhcCCCEEEecCCceEE-EEEEEeCCCCChhhHHHHHHHHHHHHHhCCCEEEEEEEE---CCEEEEEEEe
Confidence 57778888888776 7887655 4443 4455543211100001 123666666667777765433 3467999999
Q ss_pred ec--CCHHHHHHHHHHHHHHHHHH
Q 044773 230 AN--MSEDTLKLSMQRLKAFVDSI 251 (289)
Q Consensus 230 ~~--~~~e~l~~~l~~l~~~l~~~ 251 (289)
.+ +++++++.+++.|.++.++.
T Consensus 462 ~n~~tt~~di~~~~~~i~~~~~~~ 485 (490)
T PLN02880 462 GAPLTEERHVTAAWKVLQDEASKL 485 (490)
T ss_pred cCCCCCHHHHHHHHHHHHHHHHHH
Confidence 54 56799999999998887665
No 338
>TIGR03588 PseC UDP-4-keto-6-deoxy-N-acetylglucosamine 4-aminotransferase. This family of enzymes are aminotransferases of the pfam01041 family involved in the biosynthesis of pseudaminic acid. They convert UDP-4-keto-6-deoxy-N-acetylglucosamine into UDP-4-amino-4,6-dideoxy-N-acetylgalactose. Pseudaminic acid has a role in surface polysaccharide in Pseudomonas as well as in the modification of flagellin in Campylobacter and Helicobacter species.
Probab=99.02 E-value=5.5e-08 Score=88.55 Aligned_cols=210 Identities=9% Similarity=0.092 Sum_probs=114.5
Q ss_pred CCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCc-cCCCCccChhhhhhccccccCCCCCceEEEe
Q 044773 10 LKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTV-FSSPGFVSIMEILKDRNCENTEVWNRVHIVY 88 (289)
Q Consensus 10 ~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~-~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~ 88 (289)
+++++|+++ |++|...+ +++|.++|+++|++||+|++|+... +.+..... . + ..++.+.
T Consensus 120 ~~t~~v~~~---~~~G~~~~---~~~i~~l~~~~~~~lI~D~a~a~g~~~~~~~~g~-~-----------~--~~d~~~~ 179 (380)
T TIGR03588 120 KLPKAIVPV---DFAGKSVD---MQAIAALAKKHGLKIIEDASHALGAEYGGKPVGN-C-----------R--YADATVF 179 (380)
T ss_pred CCceEEEEe---CCCCccCC---HHHHHHHHHHcCCEEEEECCCcccCccCCEeCCC-c-----------c--ccceEEE
Confidence 467887755 46898877 8999999999999999999998531 22211110 0 0 1246666
Q ss_pred cCc--cccCCCCceEEEEEecCHHHHHHHHhccccCCC-C---------------------hHHHHHHHHHhCCchHHHH
Q 044773 89 SLS--KDLGLPGFRVGAIYSNDDTVVAAATKMSSFGLV-S---------------------SQTQYLLSALLSDKKFAQN 144 (289)
Q Consensus 89 s~s--K~~g~~G~r~G~i~~~~~~~~~~~~~~~~~~~~-~---------------------~~~q~~~~~~l~~~~~~~~ 144 (289)
|++ |.++.+ .-|+++.+++.+.+.++.....+.. + ...+.-+.+++...++ ..
T Consensus 180 S~~~~K~~~~~--~GG~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~n~~m~~l~aa~g~~qL-~~ 256 (380)
T TIGR03588 180 SFHPVKIITTA--EGGAVTTNDEELAERMRLLRSHGITKDPLLFEKQDEGPWYYEQQELGFNYRMTDIQAALGLSQL-KK 256 (380)
T ss_pred ecCCCCccccc--CceEEEECCHHHHHHHHHHHHCCCCCCcccccccccCcceeeeeccccccCccHHHHHHHHHHH-HH
Confidence 765 888632 3488888777776655432111100 0 0000111111111111 21
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhc-CCceecC-C---ceEEE-EEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCC
Q 044773 145 YISENKKRLKQRHRKLVSGLEKA-GISCLKS-N---AGLFC-WVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCH 218 (289)
Q Consensus 145 ~~~~~~~~~~~~~~~l~~~l~~~-g~~~~~~-~---~g~~~-~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~ 218 (289)
+.+..++-+++.+++.+.|.++ ++....+ . ..++. .+.+... .. .+.+++...| ++.||.+.+....-
T Consensus 257 -l~~~~~~r~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~~---~~r~~l~~~L-~~~gI~~~~~~~~~ 330 (380)
T TIGR03588 257 -LDRFVAKRREIAARYDRLLKDLPYFTPLTIPLGSKSAWHLYPILLDQE-FG---CTRKEVFEAL-RAAGIGVQVHYIPV 330 (380)
T ss_pred -HHHHHHHHHHHHHHHHHHhcCCCCccCCCCCCCCEeEEEEEEEEECCc-CC---CCHHHHHHHH-HHCCCCcccCCccc
Confidence 3445555566666777777766 3443322 1 12222 2233211 11 1224577766 47799886432110
Q ss_pred ----------CCC---------CCeEEEEEe-cCCHHHHHHHHHHHHHHH
Q 044773 219 ----------CTE---------PGWFRVCFA-NMSEDTLKLSMQRLKAFV 248 (289)
Q Consensus 219 ----------~~~---------~~~~Ris~~-~~~~e~l~~~l~~l~~~l 248 (289)
... ...+++.+. .+++++++..++.|++++
T Consensus 331 ~~~~~~~~~~~~~~~p~a~~~~~~~l~lP~~~~l~~~dv~~i~~~l~~~~ 380 (380)
T TIGR03588 331 HLQPYYRQGFGDGDLPSAENFYLAEISLPLHPALTLEQQQRVVETLRKVL 380 (380)
T ss_pred ccChhhhccCCcCCCcHHHHHHhceEEcCCCCCCCHHHHHHHHHHHHHhC
Confidence 000 155788774 379999999999998764
No 339
>PRK13578 ornithine decarboxylase; Provisional
Probab=99.00 E-value=1.2e-08 Score=98.01 Aligned_cols=229 Identities=10% Similarity=0.008 Sum_probs=127.8
Q ss_pred hHHHhhhC-CC-------ccEEEEeCCCCCCccCCCHHHHHHHHHH-HHHcCCEEEEecCCCCCccCCCC---ccCh-hh
Q 044773 2 YQLAQKRH-LK-------VKGVLVTNPSNPLGTTMSRNELNLLVNF-ITEKNIHLISDEIYSGTVFSSPG---FVSI-ME 68 (289)
Q Consensus 2 l~~~~~~~-~~-------~~~i~l~~p~NPtG~~~~~~~l~~l~~~-~~~~~~~li~Dea~~~~~~~~~~---~~~~-~~ 68 (289)
++++++++ ++ .+++++++|+. -|.+.+ +++|++. ++.++ .|++||||.++.--.+. .+.+ .+
T Consensus 265 i~~~i~~~~p~~~~~~~p~k~vvit~pTY-dG~~yd---i~~I~~~~~h~~~-~llvDEAhgah~~F~p~~~~~p~~al~ 339 (720)
T PRK13578 265 LREQIREVAPERADEARPFRLAVIQLGTY-DGTIYN---ARQVVDKIGHLCD-YILFDSAWVGYEQFIPMMADCSPLLLE 339 (720)
T ss_pred HHHHHHhcCccccccccCceEEEEECCCC-cceeec---HHHHHHHhhccCC-cEEEeCcchhhhccCcccccCChhhhh
Confidence 45666665 22 69999999965 599999 8888887 67778 99999999876311221 1212 11
Q ss_pred hhhccccccCCCCCceEEEecCccccCCCCceEEEEEecCHHHH--------HHHHhccccCCCChHHHHHHHHHhCCch
Q 044773 69 ILKDRNCENTEVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDTVV--------AAATKMSSFGLVSSQTQYLLSALLSDKK 140 (289)
Q Consensus 69 ~~~~~~~~~~d~~~~~i~i~s~sK~~g~~G~r~G~i~~~~~~~~--------~~~~~~~~~~~~~~~~q~~~~~~l~~~~ 140 (289)
. +.| ...++++.|.+|.++ +=.+.++|..++..+. +.++........++++...++.+-....
T Consensus 340 ~-------GaD-~p~i~v~QStHKtL~-alTQaS~LHvk~~~i~g~~~~v~~~r~~~al~m~qSTSPsY~LmASLDva~~ 410 (720)
T PRK13578 340 L-------NEN-DPGIFVTQSVHKQQA-GFSQTSQIHKKDNHIKGQARYCPHKRLNNAFMLHASTSPFYPLFAALDVNAK 410 (720)
T ss_pred c-------CCC-CCCeEEEEChhhcch-hhhhHhhhhcCCcccccccccCCHHHHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence 2 112 234688999999995 3345566766543322 3344433334355666666666555333
Q ss_pred HHHH-HHHHHHHHHHHHHHHHHHHH-Hhc-CCceecCC---------------------------c----------eEE-
Q 044773 141 FAQN-YISENKKRLKQRHRKLVSGL-EKA-GISCLKSN---------------------------A----------GLF- 179 (289)
Q Consensus 141 ~~~~-~~~~~~~~~~~~~~~l~~~l-~~~-g~~~~~~~---------------------------~----------g~~- 179 (289)
++.. ..++..+...+....+++.+ +.+ ++++..|+ . +.+
T Consensus 411 ~m~~~~G~~l~~~~i~~a~~~R~~l~~~~~~~~~~~p~~v~~~~~~~~~~~~~~~~~~~w~~~p~~~whgf~~~~~~~~~ 490 (720)
T PRK13578 411 MHEGESGRRLWMECVKLGIEARKLILARCKLIRPFIPPVVDGKPWQDYPTEQIASDLRFFSFEPGEKWHGFEGYAEDQYF 490 (720)
T ss_pred HHHHhhCHHHHHHHHHHHHHHHHHHHHhCCCeeecccccccccccccCchhhhcccccccccccCccccccccccccccc
Confidence 3332 34445555555555566655 333 44433211 0 011
Q ss_pred -----EEEecCccc-cCCCh----hhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEEecCCHHHHHHHHHHHHHHHH
Q 044773 180 -----CWVDMRHLL-SSNTF----EAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKLSMQRLKAFVD 249 (289)
Q Consensus 180 -----~~i~~~~~~-~~~~~----~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ris~~~~~~e~l~~~l~~l~~~l~ 249 (289)
+.+.++... ..... .+...+...|. ++||.+.-...+.. .+-++++ .+.++++.++++|.++-+
T Consensus 491 lDP~KltI~t~G~~~~~G~~~~~Gipg~~l~~~L~-e~gI~~E~~d~~~v----L~l~s~g-~t~~~~~~Lv~aL~~f~~ 564 (720)
T PRK13578 491 VDPCKLLLTTPGIDAETGEYEDFGIPATILANYLR-ENGIVPEKCDLNSI----LFLLTPA-EDMAKLQQLVAMLARFEK 564 (720)
T ss_pred cCCceEEEEcCCcCcccccccccCccHHHHHHHHH-HcCCEEEecCCCeE----EEEeCCC-CCHHHHHHHHHHHHHHHH
Confidence 222222111 00000 01234555554 55999886554432 4555556 589999999999998855
Q ss_pred H
Q 044773 250 S 250 (289)
Q Consensus 250 ~ 250 (289)
.
T Consensus 565 ~ 565 (720)
T PRK13578 565 H 565 (720)
T ss_pred h
Confidence 3
No 340
>TIGR01788 Glu-decarb-GAD glutamate decarboxylase. This model represents the pyridoxal phosphate-dependent glutamate (alpha) decarboxylase found in bacteria (low and hi-GC gram positive, proteobacteria and cyanobacteria), plants, fungi and at least one archaon (Methanosarcina). The product of the enzyme is gamma-aminobutyrate (GABA).
Probab=98.98 E-value=9.8e-08 Score=87.92 Aligned_cols=228 Identities=11% Similarity=0.027 Sum_probs=137.0
Q ss_pred hHHHhhhCCCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHc------CCEEEEecCCCCCcc--C-CCCccChhhhhhc
Q 044773 2 YQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEK------NIHLISDEIYSGTVF--S-SPGFVSIMEILKD 72 (289)
Q Consensus 2 l~~~~~~~~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~------~~~li~Dea~~~~~~--~-~~~~~~~~~~~~~ 72 (289)
|++++. +++.+|+++..||.||.+-+ +++|.++|+++ ++++.+|.+|++... . +.....+
T Consensus 179 L~~~i~--~~t~lV~~t~g~t~tG~idp---i~~I~~i~~~~~~~~~~~~~~HvDaaq~g~~~p~~~~~~~~~~------ 247 (431)
T TIGR01788 179 VVEAVD--ENTIGVVCILGTTYTGEYED---VKALNDALDEYNAKTGWDIPIHVDAASGGFIAPFVYPDLEWDF------ 247 (431)
T ss_pred HHHHHh--hCCeEEEEEeCCCCCcccCC---HHHHHHHHHHHHhhhCCCceEEEecccHHHHHHHhCCCchhhc------
Confidence 455554 45788899999999999999 99999999999 999999999986431 1 2111111
Q ss_pred cccccCCCCCceEEEecCccccCCCCceEEEEEecCHH-HHHHHHhcccc---------CCCChHHHHHHHHHhCCchHH
Q 044773 73 RNCENTEVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDT-VVAAATKMSSF---------GLVSSQTQYLLSALLSDKKFA 142 (289)
Q Consensus 73 ~~~~~~d~~~~~i~i~s~sK~~g~~G~r~G~i~~~~~~-~~~~~~~~~~~---------~~~~~~~q~~~~~~l~~~~~~ 142 (289)
...+.+.+..|.+|.+. ....+|+++++++. +.+.+.....+ ...+...-.++..++.-..+.
T Consensus 248 ------~~~~~DSis~s~HK~~~-~P~g~G~l~~r~~~~l~~~~~~~~~yl~~~~~~~t~~~sR~g~~al~~w~~l~~lG 320 (431)
T TIGR01788 248 ------RLPRVKSINVSGHKYGL-VYPGVGWVIWRDEEALPEELIFHVNYLGGDEPTFTLNFSRPANQVIAQYYNFLRLG 320 (431)
T ss_pred ------CCCCceEEEECchhccC-CCCCcEEEEEeChHHcchhheecccccCCCCCCcceecCchHHHHHHHHHHHHHhc
Confidence 12244567889999862 33448999987653 22322111001 111222212222222211111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc-CCceecC--CceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCC-C
Q 044773 143 QNYISENKKRLKQRHRKLVSGLEKA-GISCLKS--NAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSC-H 218 (289)
Q Consensus 143 ~~~~~~~~~~~~~~~~~l~~~l~~~-g~~~~~~--~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f-~ 218 (289)
..-+++..++..++.+++.+.|++. ++++..+ ..+... +++..... .. .+..++.+.|. +.|+.+...... .
T Consensus 321 ~~G~~~i~~~~~~la~~l~~~L~~~~~~el~~~~~~~~iV~-Fr~~~~~~-~~-~~~~~l~~~L~-~~G~~~~~~~~p~~ 396 (431)
T TIGR01788 321 REGYRKIMQNSLDVARYLAEEIAKLGPFEIISDGSGIPLVA-FKLKDDAD-PG-YTLYDLSHRLR-ERGWIVPAYTLPKN 396 (431)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCEEEeeCCCCceEEE-EEeCCCCC-CC-cCHHHHHHHHH-HCCCcccCCCCCCc
Confidence 2335667788888889999999888 5887754 444443 45542111 01 12245666665 679875322211 1
Q ss_pred CCCCCeEEEEEe-cCCHHHHHHHHHHHHHHHHHH
Q 044773 219 CTEPGWFRVCFA-NMSEDTLKLSMQRLKAFVDSI 251 (289)
Q Consensus 219 ~~~~~~~Ris~~-~~~~e~l~~~l~~l~~~l~~~ 251 (289)
..+...+|+++- ..+.+.++++++.|++++...
T Consensus 397 ~~~~~~lR~~~~~~~~~~~~~~~~~~~~~~~~~~ 430 (431)
T TIGR01788 397 AEDIVVMRIVVREGFSRDLAELLIEDIEAALAYL 430 (431)
T ss_pred cCCeEEEEEEecCCCCHHHHHHHHHHHHHHHHhh
Confidence 123457899994 468899999999999887653
No 341
>TIGR02617 tnaA_trp_ase tryptophanase, leader peptide-associated. Members of this family belong to the beta-eliminating lyase family (pfam01212) and act as tryptophanase (L-tryptophan indole-lyase). The tryptophanases of this family, as a rule, are found with a tryptophanase leader peptide (TnaC) encoded upstream. Both tryptophanases (4.1.99.1) and tyrosine phenol-lyases (EC 4.1.99.2) are found between trusted and noise cutoffs, but this model captures nearly all tryptophanases for which the leader peptide gene tnaC can be found upstream.
Probab=98.97 E-value=1.2e-07 Score=85.90 Aligned_cols=215 Identities=18% Similarity=0.230 Sum_probs=144.5
Q ss_pred CccCCCHHHHHHHHHHHHHcCCEEEEecCCCCC-cc------CCCCccChhhhhhccccccCCCCCceEEEecCccccCC
Q 044773 24 LGTTMSRNELNLLVNFITEKNIHLISDEIYSGT-VF------SSPGFVSIMEILKDRNCENTEVWNRVHIVYSLSKDLGL 96 (289)
Q Consensus 24 tG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~-~~------~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~s~sK~~g~ 96 (289)
.|+++|.++++++.++|+++|+.++.|-+--.- .+ .+....++.++..++ ...-+.+..|+||-+|+
T Consensus 197 GGqpvslenlr~V~~la~~~GIplhLDgARl~nNA~fIk~rE~~a~~~si~eI~rE~------~~~aDsvt~slsKglgA 270 (467)
T TIGR02617 197 GGQPVSLANLKAVYEIAKKYDIPVVMDSARFAENAYFIKQREAEYKNWSIEQITRET------YKYADMLAMSAKKDAMV 270 (467)
T ss_pred CCEEeCHHHHHHHHHHHHHcCCcEEEEhHHHHHHhhhhhhcchhhcCCCHHHHHHHh------hccCCEEEEEcCCCCCC
Confidence 599999999999999999999999999875321 11 123335666665332 12345778899999998
Q ss_pred C-CceEEEEEecCH---HHHHHHHh-------ccccCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044773 97 P-GFRVGAIYSNDD---TVVAAATK-------MSSFGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLE 165 (289)
Q Consensus 97 ~-G~r~G~i~~~~~---~~~~~~~~-------~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 165 (289)
| | |+++++++ .+.+..+. +.+++..+.-...+++.-|.+.-. .+++..+... .++|.+.|.
T Consensus 271 pvG---g~Lag~d~~~~~l~~~~~~~~i~~EGf~tYGGlagrd~ea~a~Gl~e~~~-~~yl~~ri~q----v~yl~~~L~ 342 (467)
T TIGR02617 271 PMG---GLLCFKDDSFFDVYTECRTLCVVQEGFPTYGGLEGGAMERLAVGLYDGMN-LDWLAYRINQ----VQYLVNGLE 342 (467)
T ss_pred ccc---ceEEecchhHHHHHHHHHhhcccccCCcCcCchhHHHHHHHHhhhhhccc-HHHHHHHHHH----HHHHHHHHH
Confidence 8 7 78888877 44443332 345555666667777766776533 4555554433 366888999
Q ss_pred hcCCceecCCceEEEEEecCccccC--CChhhHHHHHHHHHHhcCeEEe-CCCC-CCCCC---------CCeEEEEEec-
Q 044773 166 KAGISCLKSNAGLFCWVDMRHLLSS--NTFEAEMELWKKIVYDVKLNIS-PGSS-CHCTE---------PGWFRVCFAN- 231 (289)
Q Consensus 166 ~~g~~~~~~~~g~~~~i~~~~~~~~--~~~~~~~~~~~~ll~~~gi~v~-pg~~-f~~~~---------~~~~Ris~~~- 231 (289)
+.|+.+.. .||.-++++....... ........++..|-.+.||-.. -|+. ++-++ -..+|+++..
T Consensus 343 ~~Gvpi~~-~Gghav~iDa~~~lphip~~~fpa~al~~~ly~~~GiR~~e~G~~~~~rd~~~~~~~~~~~el~RlaipRr 421 (467)
T TIGR02617 343 EIGVVCQQ-AGGHAAFVDAGKLLPHIPADQFPAHALACELYKVAGIRAVEIGSLLLGRDPKTGKQLPCPAELLRLTIPRA 421 (467)
T ss_pred hCCCcEEe-cCccEEEEehhhhCCCCChhhCcHHHHHHHHHHHcCcceEeecceecccCCCCCccCCCccceeeeccccc
Confidence 99999988 8888888876653221 1124445677778778899743 2332 11111 2579999964
Q ss_pred -CCHHHHHHHHHHHHHHHHHHHH
Q 044773 232 -MSEDTLKLSMQRLKAFVDSITT 253 (289)
Q Consensus 232 -~~~e~l~~~l~~l~~~l~~~~~ 253 (289)
-|.+.++-..+++..+.+....
T Consensus 422 vyt~~h~d~v~~~~~~~~~~~~~ 444 (467)
T TIGR02617 422 TYTQTHMDFIIEAFKHVKENAPN 444 (467)
T ss_pred cccHhHHHHHHHHHHHHHhhhhh
Confidence 4889999999999998877654
No 342
>PRK15400 lysine decarboxylase CadA; Provisional
Probab=98.97 E-value=1.7e-08 Score=96.94 Aligned_cols=230 Identities=9% Similarity=0.009 Sum_probs=128.2
Q ss_pred hHHHhhhCCCcc---EEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccC
Q 044773 2 YQLAQKRHLKVK---GVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENT 78 (289)
Q Consensus 2 l~~~~~~~~~~~---~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (289)
+++.++++|+.+ .+++++|+. -|.+.+ +++|++.|+.++ +++||||.++..-.+.++....+.. +.
T Consensus 285 i~~~i~~~p~ak~p~~~vit~pTY-dG~~yd---~~~I~~~~~~~~--ilvDEAwgah~~F~p~~~~~sam~~-----ga 353 (714)
T PRK15400 285 IAKRVKETPNATWPVHAVITNSTY-DGLLYN---TDFIKKTLDVKS--IHFDSAWVPYTNFSPIYEGKCGMSG-----GR 353 (714)
T ss_pred HHHHHHhCccccCccEEEEECCCC-ccEecC---HHHHHHHhCCCC--EEEEccchhhhccCcccCCcChhhc-----CC
Confidence 567777777766 789999954 699999 788888888776 7899999876321222221111110 11
Q ss_pred CCCCceEEEecCccccCCCCceEEEEEecCHHHHHHHHhccccCCCChHHHHHHHHHhCCchHHHH-HHHHHHHHHHHHH
Q 044773 79 EVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDTVVAAATKMSSFGLVSSQTQYLLSALLSDKKFAQN-YISENKKRLKQRH 157 (289)
Q Consensus 79 d~~~~~i~i~s~sK~~g~~G~r~G~i~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~-~~~~~~~~~~~~~ 157 (289)
+..+.++++.|.+|.++ +=.+.++|..+...-.+.++........++++...++.+-....++.. ..++..+...+..
T Consensus 354 ~~~~~i~vtQStHKtL~-alTQaS~LHvkg~vd~~~~n~a~~m~~STSPsY~l~ASLD~a~~~m~~~~G~~l~~~~i~~a 432 (714)
T PRK15400 354 VEGKVIYETQSTHKLLA-AFSQASMIHVKGDVNEETFNEAYMMHTTTSPHYGIVASTETAAAMMKGNAGKRLINGSIERA 432 (714)
T ss_pred CCCCceEEEEchhhccc-chhHHhHHHHcCCCCHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 22355688999999984 323344554433211233333333333555666666666554444332 4555555566666
Q ss_pred HHHHHHHHhc-C------CceecCCc----------------e-------------EEEEEecCccccC-----CChhhH
Q 044773 158 RKLVSGLEKA-G------ISCLKSNA----------------G-------------LFCWVDMRHLLSS-----NTFEAE 196 (289)
Q Consensus 158 ~~l~~~l~~~-g------~~~~~~~~----------------g-------------~~~~i~~~~~~~~-----~~~~~~ 196 (289)
..+++.+.+. + +.+..++. | .-+.+.++..... .. .+.
T Consensus 433 ~~~R~~l~~~~~~~~~w~~~~~~~~~~~~~~~w~~~p~~~whgf~~~~~~~~~lDP~Klti~tpgi~~~g~~~~~G-ipg 511 (714)
T PRK15400 433 IKFRKEIKRLRTESDGWFFDVWQPDHIDTTECWPLRSDSTWHGFKNIDNEHMYLDPIKVTLLTPGMKKDGTMSDFG-IPA 511 (714)
T ss_pred HHHHHHHHhCCCcccCceEEecChhhcccchhcccCccccccCcccccccccccCCceEEEEeCCCCCCccccccC-CCH
Confidence 6677777654 3 33332220 0 0122222210000 01 122
Q ss_pred HHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEEecCCHHHHHHHHHHHHHHHHH
Q 044773 197 MELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKLSMQRLKAFVDS 250 (289)
Q Consensus 197 ~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ris~~~~~~e~l~~~l~~l~~~l~~ 250 (289)
..+... |+++||.+.-...+.. .+-++++ .+.++++.+++.|.++-+.
T Consensus 512 ~~v~~~-L~e~gI~~E~~d~~~i----Lfl~s~g-~t~~~~~~L~~aL~~f~~~ 559 (714)
T PRK15400 512 SIVAKY-LDEHGIVVEKTGPYNL----LFLFSIG-IDKTKALSLLRALTDFKRA 559 (714)
T ss_pred HHHHHH-HHHcCCEEEecCCCeE----EEEeCCC-CCHHHHHHHHHHHHHHHHh
Confidence 334444 4788999876554332 3444445 5899999999999887443
No 343
>PRK04311 selenocysteine synthase; Provisional
Probab=98.96 E-value=1.3e-07 Score=87.67 Aligned_cols=218 Identities=19% Similarity=0.186 Sum_probs=123.1
Q ss_pred hHHHhhhCCCccEEEEeCCCCCC--c--cCCCHHHHHHHHHHHHHcCCEEEEecCCCCCc----cCCCCccChhhhhhcc
Q 044773 2 YQLAQKRHLKVKGVLVTNPSNPL--G--TTMSRNELNLLVNFITEKNIHLISDEIYSGTV----FSSPGFVSIMEILKDR 73 (289)
Q Consensus 2 l~~~~~~~~~~~~i~l~~p~NPt--G--~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~----~~~~~~~~~~~~~~~~ 73 (289)
+++++. +++++|++++++||+ | ...+ +++|+++|+++|+.+|+|.+.+.+. ++-...+.+.+.+
T Consensus 209 le~aI~--~~TklV~~vh~sN~~i~G~~~~~d---l~eI~~lak~~gi~vivD~gsG~l~~~~~~gl~~~p~~~~~l--- 280 (464)
T PRK04311 209 YEQAIN--ENTALLLKVHTSNYRIEGFTKEVS---LAELAALGKEHGLPVVYDLGSGSLVDLSQYGLPDEPTVQELL--- 280 (464)
T ss_pred HHHhcC--ccCeEEEEEcCCCccccccCCcCC---HHHHHHHHHHcCCeEEEECCCcccccchhccCCCCCchhhHH---
Confidence 344444 568999999999983 4 4456 9999999999999999999643221 1101112333322
Q ss_pred ccccCCCCCceEEEecCccccCCCCceEEEEEecCHHHHHHHHhc--cccCCCChHHHHHHHHHhC----CchHH-----
Q 044773 74 NCENTEVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDTVVAAATKM--SSFGLVSSQTQYLLSALLS----DKKFA----- 142 (289)
Q Consensus 74 ~~~~~d~~~~~i~i~s~sK~~g~~G~r~G~i~~~~~~~~~~~~~~--~~~~~~~~~~q~~~~~~l~----~~~~~----- 142 (289)
..+.+++++|.+|.+|.| ..|+++++++ +.+.++.. .....+.-....++...+. .....
T Consensus 281 ------~~GaDiv~fSg~K~LgGp--~~G~i~g~~~-li~~l~~~~~~r~lr~dk~~l~~l~~~l~~~~~~~~~~~~i~~ 351 (464)
T PRK04311 281 ------AAGVDLVTFSGDKLLGGP--QAGIIVGKKE-LIARLKKHPLKRALRVDKLTLAALEATLRLYLDPEKLAEEIPT 351 (464)
T ss_pred ------hcCCcEEEecCcccccCC--ceEEEEEcHH-HHHHHhhchhHHHHhcchHHHHHHHHHHHHHhChhhhhhhCcH
Confidence 236679999999999745 4899999644 44433321 1111122222222222222 11100
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcC---C--ceecC----------C---ceEEEEEecCccccCCChhhHHHHHHHHH
Q 044773 143 QNYISENKKRLKQRHRKLVSGLEKAG---I--SCLKS----------N---AGLFCWVDMRHLLSSNTFEAEMELWKKIV 204 (289)
Q Consensus 143 ~~~~~~~~~~~~~~~~~l~~~l~~~g---~--~~~~~----------~---~g~~~~i~~~~~~~~~~~~~~~~~~~~ll 204 (289)
.+.+....+.++++.+.+.+.|+++. + ++.+. . .++-+.++... ....++...|
T Consensus 352 l~~l~~~~~~~~~~A~~la~~L~~~~~~~~~~~~~~~~~~~gggs~p~~~~~~~~v~~~~~~-------~~~~~l~~~l- 423 (464)
T PRK04311 352 LRLLTRSPEELRARAERLAAALKAALGAAFAVEVVPSFSQVGGGSLPVDRLPSAAVTLTPKD-------RSLEALAARL- 423 (464)
T ss_pred HHHhcCCHHHHHHHHHHHHHHHHhccCCCeeEEEEEccCccCCCCCcCCCCCeEEEEEeCCC-------CCHHHHHHHH-
Confidence 11133344667778888888887652 2 22221 0 11222222111 1123455554
Q ss_pred HhcCeEEeCCCCCCCCCCCeEEEEEecCCHHHHHHHHHHHHHHHH
Q 044773 205 YDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKLSMQRLKAFVD 249 (289)
Q Consensus 205 ~~~gi~v~pg~~f~~~~~~~~Ris~~~~~~e~l~~~l~~l~~~l~ 249 (289)
++....+..- ..++.+.+.+-.+.++|++.+++++++++.
T Consensus 424 r~~~~~i~~r-----~~~~~~~ld~r~~~~~~~~~~~~~~~~~~~ 463 (464)
T PRK04311 424 RLLPPPVIGR-----IEDGRLLLDLRTLEEEDEERLAAALLEALN 463 (464)
T ss_pred hcCCCCEEEE-----EECCEEEEEeCcCCHHHHHHHHHHHHHHhh
Confidence 4544333321 235678888866799999999999988753
No 344
>PLN02590 probable tyrosine decarboxylase
Probab=98.95 E-value=1.5e-07 Score=88.56 Aligned_cols=220 Identities=14% Similarity=0.104 Sum_probs=131.4
Q ss_pred EEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEecCccc
Q 044773 14 GVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVYSLSKD 93 (289)
Q Consensus 14 ~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~s~sK~ 93 (289)
+|+.+-.+-.||.+=+ +++|.++|+++++++.+|.+|.+...-.+. ...++. +...-+-+...++|.
T Consensus 290 ~VvaTaGTT~tGaiDp---l~~Ia~i~~~~g~WlHVDaA~GG~al~~~~---~r~~~~-------Gie~ADSit~D~HK~ 356 (539)
T PLN02590 290 FICATVGTTSSAAVDP---LVPLGNIAKKYGIWLHVDAAYAGNACICPE---YRKFID-------GIENADSFNMNAHKW 356 (539)
T ss_pred EEEEEeCCCCCcccCC---HHHHHHHHHHhCCeEEEecchhhhhhcChh---hHHHhc-------CCccCCEEEECchhh
Confidence 3344444667787766 999999999999999999999976433222 222322 122334567889999
Q ss_pred cCCCCceEEEEEecCHH-HHHHHHhcccc------------------CCCCh-HHHHHHHHHhCCchHHHHHHHHHHHHH
Q 044773 94 LGLPGFRVGAIYSNDDT-VVAAATKMSSF------------------GLVSS-QTQYLLSALLSDKKFAQNYISENKKRL 153 (289)
Q Consensus 94 ~g~~G~r~G~i~~~~~~-~~~~~~~~~~~------------------~~~~~-~~q~~~~~~l~~~~~~~~~~~~~~~~~ 153 (289)
++ ....+|.++.++.. +.+.+..-..| ...+. ....-+...++.. ..+-+++..++.
T Consensus 357 l~-~p~~cg~llvr~~~~l~~a~~~~~~YL~~~~~~~~~~~d~~d~~i~lsRr~raLklW~~lr~~--G~~G~~~~i~~~ 433 (539)
T PLN02590 357 LF-ANQTCSPLWVKDRYSLIDALKTNPEYLEFKVSKKDTVVNYKDWQISLSRRFRSLKLWMVLRLY--GSENLRNFIRDH 433 (539)
T ss_pred cC-cCcCEEEEEecCHHHHHHHhhcCHHHhCCcccccccCCCccccCCCCCCchHHHHHHHHHHHH--HHHHHHHHHHHH
Confidence 97 66889999987653 22222110000 01111 2222233333322 134456667777
Q ss_pred HHHHHHHHHHHHhc-CCceecC-CceEEEEEecCccccCCC-h-hhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEE
Q 044773 154 KQRHRKLVSGLEKA-GISCLKS-NAGLFCWVDMRHLLSSNT-F-EAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCF 229 (289)
Q Consensus 154 ~~~~~~l~~~l~~~-g~~~~~~-~~g~~~~i~~~~~~~~~~-~-~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ris~ 229 (289)
-+..+++.+.+++. ++++..+ .-+..+ ++......... . .-..++.+.+.+...+++.+... .+..++|+++
T Consensus 434 ~~lA~~~~~~l~~~~~fel~~~~~l~iVc-Fr~~~~~~~~~~~~~ln~~l~~~l~~~G~~~vs~t~~---~g~~~lR~~i 509 (539)
T PLN02590 434 VNLAKHFEDYVAQDPSFEVVTTRYFSLVC-FRLAPVDGDEDQCNERNRELLAAVNSTGKIFISHTAL---SGKFVLRFAV 509 (539)
T ss_pred HHHHHHHHHHHhcCCCeEEecCCceEEEE-EEecCCCCCHHHHHHHHHHHHHHHHhCCCEEEEeeEE---CCEEEEEEEe
Confidence 77888899999877 6887654 444333 44432111100 0 01134666666555555554432 3456899999
Q ss_pred ec--CCHHHHHHHHHHHHHHHHHHHH
Q 044773 230 AN--MSEDTLKLSMQRLKAFVDSITT 253 (289)
Q Consensus 230 ~~--~~~e~l~~~l~~l~~~l~~~~~ 253 (289)
.+ +++++++.+++.|.+..++..+
T Consensus 510 ~n~~T~~~dv~~~~~~i~~~a~~~~~ 535 (539)
T PLN02590 510 GAPLTEEKHVTEAWQIIQKHASKFTR 535 (539)
T ss_pred cCCCCCHHHHHHHHHHHHHHHHHhcc
Confidence 55 6899999999999998777665
No 345
>cd01494 AAT_I Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes. PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis
Probab=98.90 E-value=5.9e-09 Score=83.06 Aligned_cols=80 Identities=24% Similarity=0.279 Sum_probs=63.1
Q ss_pred CCCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEe
Q 044773 9 HLKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVY 88 (289)
Q Consensus 9 ~~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~ 88 (289)
.++++++++++|+||+|...+ +++|.++|+++|+++|+|++|..+...... .. . ...+.++++.
T Consensus 90 ~~~~~~v~~~~~~~~~g~~~~---~~~l~~~~~~~~~~li~D~a~~~~~~~~~~-~~---~---------~~~~~d~~~~ 153 (170)
T cd01494 90 KPNVALIVITPNTTSGGVLVP---LKEIRKIAKEYGILLLVDAASAGGASPAPG-VL---I---------PEGGADVVTF 153 (170)
T ss_pred cCceEEEEEecCcCCCCeEcC---HHHHHHHHHHcCCEEEEecccccccccccc-cc---c---------ccccCCEEEE
Confidence 457899999999999999988 588899999999999999999976443322 01 1 1225668899
Q ss_pred cCccccCCCCceEEEEEe
Q 044773 89 SLSKDLGLPGFRVGAIYS 106 (289)
Q Consensus 89 s~sK~~g~~G~r~G~i~~ 106 (289)
|++|.+|. .++|++++
T Consensus 154 s~~K~~~~--~~~G~l~~ 169 (170)
T cd01494 154 SLHKNLGG--EGGGVVIV 169 (170)
T ss_pred EcccccCC--CceEEEEe
Confidence 99999974 67999986
No 346
>PRK12566 glycine dehydrogenase; Provisional
Probab=98.88 E-value=4.2e-07 Score=89.43 Aligned_cols=223 Identities=13% Similarity=0.109 Sum_probs=134.6
Q ss_pred CCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEec
Q 044773 10 LKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVYS 89 (289)
Q Consensus 10 ~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~s 89 (289)
+++.+|++++|++-++. ++++++|+++++++|+.+++|-++.- .. .......+ .+-++++++
T Consensus 640 ~~laaVmiT~Pnt~Gv~---e~~V~eI~~iah~~Galv~vDgA~~~-a~--~~l~~Pg~------------~GADi~~~s 701 (954)
T PRK12566 640 DRLSCLMITYPSTHGVY---EEGIREICEVVHQHGGQVYMDGANLN-AQ--VGLARPAD------------IGADVSHMN 701 (954)
T ss_pred CCEEEEEEEecCcCcee---cchHHHHHHHHHHcCCEEEEEeeChh-hc--cCCCChhh------------cCCCEEEec
Confidence 46778888888765433 45699999999999999999999962 11 11121222 256799999
Q ss_pred CccccCC----CCceEEEEEecCHHHHHHHHhcc------------cc--CC-CChHHHHHHHHHhCCchHHHHHHHHHH
Q 044773 90 LSKDLGL----PGFRVGAIYSNDDTVVAAATKMS------------SF--GL-VSSQTQYLLSALLSDKKFAQNYISENK 150 (289)
Q Consensus 90 ~sK~~g~----~G~r~G~i~~~~~~~~~~~~~~~------------~~--~~-~~~~~q~~~~~~l~~~~~~~~~~~~~~ 150 (289)
++|+|+. +|.-+|.+.+. +.+...+.... .. .+ .+......+..++.... .+ +++..
T Consensus 702 ~HKtf~~P~G~GGP~vG~iav~-~~L~pfLp~~P~~d~~G~~~r~ga~S~~~~gsa~~l~~A~~Yi~~lG--~e-Lk~aa 777 (954)
T PRK12566 702 LHKTFCIPHGGGGPGMGPIGVR-AHLAPFVANHPVVPVEGPDPNNGAVSAAPWGSASILPISWMYIAMMG--PQ-LADAS 777 (954)
T ss_pred CCcccCcCccCCCCccchhhhh-hhhhhhccCCCCcCCCCCCCCCCceeecccchHHHHHHHHHHHHHHC--HH-HHHHH
Confidence 9999852 24446666653 33333333211 00 10 11122233333343322 33 67777
Q ss_pred HHHHHHHHHHHHHHHhc-CCceecCCceEE--EEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEE
Q 044773 151 KRLKQRHRKLVSGLEKA-GISCLKSNAGLF--CWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRV 227 (289)
Q Consensus 151 ~~~~~~~~~l~~~l~~~-g~~~~~~~~g~~--~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ri 227 (289)
.....+.+++.+.|.+. ++.+.++++.++ ..+++........ .+..++.+.|+ ++||...- ..| +..+.+||
T Consensus 778 ~~ailnAnYla~rL~~~~~v~~~~~~~~~~hEfii~~~~l~~~~g-~~~~dvakRL~-d~Gihapt-~~f--Pv~~~LmI 852 (954)
T PRK12566 778 EVAILSANYLANQLGGAFPVLYRGRNERVAHECILDLRPLKAQTG-ISEEDVAKRLM-DYGFHAPT-MSF--PVPGTLMV 852 (954)
T ss_pred HHHHHHHHHHHHHhHhhCCCCcCCCCCCeeeEEEEEccccccccC-CCHHHHHHHHH-HCCcEEeE-Eee--ccCCEEEE
Confidence 77778889999999774 444433222211 2234432211111 22356888888 88997543 333 23778999
Q ss_pred EEec-CCHHHHHHHHHHHHHHHHHHHHhhhccc
Q 044773 228 CFAN-MSEDTLKLSMQRLKAFVDSITTTLHNQS 259 (289)
Q Consensus 228 s~~~-~~~e~l~~~l~~l~~~l~~~~~~~~~~~ 259 (289)
++.. .+.+|+|+++++|..+.++...-.....
T Consensus 853 epTE~eskeEIDrf~eAL~~I~~e~~~v~~g~~ 885 (954)
T PRK12566 853 EPTESESKAELDRFVEAMLSIRAEIGKVQEGNW 885 (954)
T ss_pred EeeeeCCHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 9954 7999999999999999998765443333
No 347
>PRK15399 lysine decarboxylase LdcC; Provisional
Probab=98.88 E-value=2.8e-07 Score=88.75 Aligned_cols=227 Identities=8% Similarity=0.004 Sum_probs=125.3
Q ss_pred hHHHhhhCCCc---cEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEE-EEecCCCCCccCCCCccChhhhhhcccccc
Q 044773 2 YQLAQKRHLKV---KGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHL-ISDEIYSGTVFSSPGFVSIMEILKDRNCEN 77 (289)
Q Consensus 2 l~~~~~~~~~~---~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~l-i~Dea~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (289)
++++++++|+. +++++++|+. -|.+.+ +++|++.| ++.+ ++||||.++..-.+.+.+...+...
T Consensus 285 I~~~i~~~p~~~~p~~vvit~pTY-dGi~yd---~~~I~~~~---g~~~ilvDEAhgah~~F~p~~~~~sam~~~----- 352 (713)
T PRK15399 285 IEEKVAATTQAQWPVHAVITNSTY-DGLLYN---TDWIKQTL---DVPSIHFDSAWVPYTHFHPIYQGKSGMSGE----- 352 (713)
T ss_pred HHHHHHhCCCcCCceEEEEECCCC-CceeeC---HHHHHHHh---CCCEEEEeccchhhhhcCcccCCcChhhCC-----
Confidence 56677777665 6899999954 699999 66677666 5655 6999998763212222221222110
Q ss_pred CCCCC-ceEEEecCccccCCCCceEEEEEecCHHHHHHHHhccccCCCChHHHHHHHHHhCCchHHHH-HHHHHHHHHHH
Q 044773 78 TEVWN-RVHIVYSLSKDLGLPGFRVGAIYSNDDTVVAAATKMSSFGLVSSQTQYLLSALLSDKKFAQN-YISENKKRLKQ 155 (289)
Q Consensus 78 ~d~~~-~~i~i~s~sK~~g~~G~r~G~i~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~-~~~~~~~~~~~ 155 (289)
...+ .++.+.|.+|.++ +=.+.++|.++...-.+.++........++++...++.+-....+++. ..++..+...+
T Consensus 353 -~~aD~~i~~tQStHKtL~-alTQaS~iHvk~~vd~~~~n~a~~m~~STSPsY~LmASLD~a~~~m~~~~G~~l~~~~i~ 430 (713)
T PRK15399 353 -RVPGKVIFETQSTHKMLA-AFSQASLIHIKGEYDEETFNEAFMMHTSTSPSYPIVASVETAAAMLRGNPGKRLINRSVE 430 (713)
T ss_pred -CCCCeeeeeeeehhcccc-ccchheeeeecCCCCHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 0112 3355889999995 445567777754322234444333343556666666666554444332 44555555556
Q ss_pred HHHHHHHHHHhc-C------CceecCC----c-------------------e------EEEEEecCcccc-----CCChh
Q 044773 156 RHRKLVSGLEKA-G------ISCLKSN----A-------------------G------LFCWVDMRHLLS-----SNTFE 194 (289)
Q Consensus 156 ~~~~l~~~l~~~-g------~~~~~~~----~-------------------g------~~~~i~~~~~~~-----~~~~~ 194 (289)
....+++.+.+. + +++..++ . + .-+.+..+.... ... .
T Consensus 431 ~a~~fR~~l~~~~~~~~~w~f~~~~~~~~~~~~~w~l~p~~~whgf~~~~~~~~~lDP~KltI~t~g~~~~g~~~~~G-i 509 (713)
T PRK15399 431 RALHFRKEVQRLREESDGWFFDIWQPENVDEAECWPVAPGEQWHGFKDADADHMFLDPVKVTILTPGMDEQGNMSEEG-I 509 (713)
T ss_pred HHHHHHHHHHhccccccCceeeecCccccCCccceecCCCcccccccccccccccCCCceEEEEecCcccccccccCC-C
Confidence 666666666554 2 2333221 0 0 012222221000 001 1
Q ss_pred hHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEEecCCHHHHHHHHHHHHHHHH
Q 044773 195 AEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKLSMQRLKAFVD 249 (289)
Q Consensus 195 ~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ris~~~~~~e~l~~~l~~l~~~l~ 249 (289)
+...+... |+++||.+.-...+.. .+-++++ .+.++++.+++.|.++-+
T Consensus 510 ~g~~l~~~-L~e~gI~~E~~d~~~v----L~l~s~g-~t~~~~~~L~~aL~~f~~ 558 (713)
T PRK15399 510 PAALVAKF-LDERGIVVEKTGPYNL----LFLFSIG-IDKTKAMGLLRGLTEFKR 558 (713)
T ss_pred CHHHHHHH-HHHcCCEEEecCCCeE----EEEeCCC-CCHHHHHHHHHHHHHHHH
Confidence 22345554 4788999886554432 3444555 589999999999988744
No 348
>PLN03032 serine decarboxylase; Provisional
Probab=98.87 E-value=2.7e-07 Score=83.41 Aligned_cols=205 Identities=15% Similarity=0.094 Sum_probs=122.7
Q ss_pred hHHHhhhCC-CccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcC-----CEEEEecCCCCCccCCCCccChhhhhhcccc
Q 044773 2 YQLAQKRHL-KVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKN-----IHLISDEIYSGTVFSSPGFVSIMEILKDRNC 75 (289)
Q Consensus 2 l~~~~~~~~-~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~-----~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~ 75 (289)
|++++..+. ++.+|+++..+|+||.+-+ +++|.++|+++| +++.+|.+|.+....-....+....
T Consensus 151 L~~~i~~~~~~~~lvv~tagtt~tG~idp---i~eI~~i~~~~g~~~~~~~lHvDaA~gg~~~p~~~~~~~~~~------ 221 (374)
T PLN03032 151 LERALAKNRDKPAILNVNIGTTVKGAVDD---LDRILRILKELGYTEDRFYIHCDGALFGLMMPFVSRAPEVTF------ 221 (374)
T ss_pred HHHHHHHcCCCCEEEEEEecCcCCccCCC---HHHHHHHHHHhCCCCCCeeEEEEccchhhhhhccCCCcccCC------
Confidence 456665432 4667777778999999988 899999999996 5899999998642210000000111
Q ss_pred ccCCCCCceEEEecCccccCCCCceEEEEEecCHHHHHHHHhcccc-------CCCCh--HHHHHHHHHhCCchHHHHHH
Q 044773 76 ENTEVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDTVVAAATKMSSF-------GLVSS--QTQYLLSALLSDKKFAQNYI 146 (289)
Q Consensus 76 ~~~d~~~~~i~i~s~sK~~g~~G~r~G~i~~~~~~~~~~~~~~~~~-------~~~~~--~~q~~~~~~l~~~~~~~~~~ 146 (289)
....+.+..|.+|.+| ....+|.++.+++.+.. +.....| ...+. .....+...+.... .+-+
T Consensus 222 ----~~~vDSis~s~HK~~g-~P~g~G~ll~r~~~~~~-~~~~~~Yl~~~d~ti~gSR~g~~~l~~w~~l~~~G--~~g~ 293 (374)
T PLN03032 222 ----RKPIGSVSVSGHKFLG-CPMPCGVALTRKKHVKA-LSQNVEYLNSRDATIMGSRNGHAPLYLWYTLRRKG--YRGI 293 (374)
T ss_pred ----CcCCcEEEECcccccC-CCcCeEEEEEEchhhHh-hccCCcccCCCCCcccCCCchHHHHHHHHHHHHhC--HHHH
Confidence 1134567889999887 44669999997655432 2211111 11222 22333333333322 3445
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCcee-cCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeE
Q 044773 147 SENKKRLKQRHRKLVSGLEKAGISCL-KSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWF 225 (289)
Q Consensus 147 ~~~~~~~~~~~~~l~~~l~~~g~~~~-~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~ 225 (289)
++..+..-++.+++.+.|++.++++. .|.. ..+.+.-+. . +. +.+...+.+. +..+
T Consensus 294 ~~~~~~~~~~a~~l~~~l~~~~~~~~~~p~~-~~V~f~~~~---~-------~~---~~~~w~l~~~---------~~~~ 350 (374)
T PLN03032 294 KRDVQHCMRNAHYLKDRLTEAGLTCRLNELS-STVVFERPM---D-------EA---FIKKWQLACE---------GDIA 350 (374)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCcEEECCCc-eEEEEcCCC---c-------Hh---Hhheeeeccc---------CCEE
Confidence 66777778888899999988887754 4544 334343331 1 11 2223334322 2378
Q ss_pred EEEEec-CCHHHHHHHHHHHHH
Q 044773 226 RVCFAN-MSEDTLKLSMQRLKA 246 (289)
Q Consensus 226 Ris~~~-~~~e~l~~~l~~l~~ 246 (289)
|+++.. ++.+.++++++.|++
T Consensus 351 hi~vm~~~~~~~id~fi~dl~~ 372 (374)
T PLN03032 351 HVVVMPNVTVEKLDEFVEELVE 372 (374)
T ss_pred EEEECCCCCHHHHHHHHHHHhc
Confidence 999954 678889998887764
No 349
>TIGR03799 NOD_PanD_pyr putative pyridoxal-dependent aspartate 1-decarboxylase. This enzyme is proposed here to be a form of aspartate 1-decarboxylase, pyridoxal-dependent, that represents a non-orthologous displacement to the more widely distributed pyruvoyl-dependent form (TIGR00223). Aspartate 1-decarboxylase makes beta-alanine, used usually in pathothenate biosynthesis, by decarboxylation from asparatate. A number of species with the PanB and PanC enzymes, however, lack PanD. This protein family occurs in a number of Proteobacteria that lack PanD. This enzyme family appears to be a pyridoxal-dependent enzyme (see pfam00282). The family was identified by Partial Phylogenetic Profiling; members in Geobacter sulfurreducens, G. metallireducens, and Pseudoalteromonas atlantica are clustered with the genes for PanB and PanC. We suggest the gene symbol panP (panthothenate biosynthesis enzyme, Pyridoxal-dependent).
Probab=98.86 E-value=3.8e-07 Score=85.93 Aligned_cols=216 Identities=14% Similarity=0.117 Sum_probs=121.7
Q ss_pred CccEEEEe--CCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEe
Q 044773 11 KVKGVLVT--NPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVY 88 (289)
Q Consensus 11 ~~~~i~l~--~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~ 88 (289)
+++.++++ ..++.||.+-+ +++|+++|+++|+++.+|.+|++...-.. ....++. +...-+.+..
T Consensus 263 g~~~~~vvataGtt~tGaiDp---l~eIa~i~~~~g~~lHVDaA~gg~~~~~~---~~r~~l~-------gle~aDSit~ 329 (522)
T TIGR03799 263 NIKPLAIVGVAGTTETGNIDP---LDEMADIAQELGCHFHVDAAWGGATLLSN---TYRHLLK-------GIERADSVTI 329 (522)
T ss_pred CCCcEEEEEEecCcCCCCcCC---HHHHHHHHHHcCCeEEEEchhhhHHHhCH---HHHHHhc-------CchhCCEEEE
Confidence 34444443 33678999988 99999999999999999999985422111 1222222 1124467889
Q ss_pred cCccccCCCCceEEEEEecCHHHHHHHHhcccc-------------CCCChHHH-HHHHHHhCCchHHHHHHHHHHHHHH
Q 044773 89 SLSKDLGLPGFRVGAIYSNDDTVVAAATKMSSF-------------GLVSSQTQ-YLLSALLSDKKFAQNYISENKKRLK 154 (289)
Q Consensus 89 s~sK~~g~~G~r~G~i~~~~~~~~~~~~~~~~~-------------~~~~~~~q-~~~~~~l~~~~~~~~~~~~~~~~~~ 154 (289)
+.+|.++ ....+|.++.++....+.+.....| ..++.... ..+...++... ..-+++..++..
T Consensus 330 d~HK~l~-~P~g~G~llvr~~~~~~~~~~~~~Yl~~~~~~d~~~~~legsR~~~al~lw~aL~~lG--~~G~~~ii~~~~ 406 (522)
T TIGR03799 330 DAHKQLY-VPMGAGMVLFKDPALMSAIEHHAEYILRKGSKDLGSHTLEGSRPGMAMLVYAGLHIIG--RKGYELLIDQSI 406 (522)
T ss_pred ChhhcCC-cCcccEEEEEeCHHHHHHhccCcchhcCCCCCccccceeecCcchHHHHHHHHHHHHh--HHHHHHHHHHHH
Confidence 9999876 4467899999776554433321111 11222111 12333333221 333677778888
Q ss_pred HHHHHHHHHHHhc-CCceecCC-ceEEEEEec-CccccC-------------CChhhH--HHHHHHHHHhcCeEEeCCC-
Q 044773 155 QRHRKLVSGLEKA-GISCLKSN-AGLFCWVDM-RHLLSS-------------NTFEAE--MELWKKIVYDVKLNISPGS- 215 (289)
Q Consensus 155 ~~~~~l~~~l~~~-g~~~~~~~-~g~~~~i~~-~~~~~~-------------~~~~~~--~~~~~~ll~~~gi~v~pg~- 215 (289)
+..+++.+.|.+. ++++..+. -+..+ ++. +..... ....+. ..+.+.+.++..+++.+..
T Consensus 407 ~la~~l~~~L~~~~~~el~~~p~l~iv~-Fr~~p~~~~~~l~~~~~~~~~~~~~~~~~ln~~i~~~~~~~G~~~vs~t~l 485 (522)
T TIGR03799 407 EKAKYFADLIQQQPDFELVTEPELCLLT-YRYVPEEVQQALAKADEEQREKINELLDRLTKFIQKRQREAGKSFVSRTRL 485 (522)
T ss_pred HHHHHHHHHHhhCCCeEEecCCCccEEE-EEEeChhhcccccccchhhhhhHHHHHHHHHHHHHHHHHhcCCEEEEEEEe
Confidence 8889999999887 78876543 44443 342 321110 000011 2344444444333444222
Q ss_pred ---CCCCCCCCeEEEEEec--CCHHHHHHHHHH
Q 044773 216 ---SCHCTEPGWFRVCFAN--MSEDTLKLSMQR 243 (289)
Q Consensus 216 ---~f~~~~~~~~Ris~~~--~~~e~l~~~l~~ 243 (289)
.+...+...+|+++.+ +++++++.+++.
T Consensus 486 ~~~~~~g~~~~~lR~~~~np~tt~~~i~~~l~~ 518 (522)
T TIGR03799 486 TPAQYDHQPTVVFRVVLANPLTTHEILQDILDE 518 (522)
T ss_pred cccccCCCCcEEEEEEecCCCCCHHHHHHHHHH
Confidence 1111123569999965 578888887653
No 350
>KOG1358 consensus Serine palmitoyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.86 E-value=3.8e-08 Score=86.27 Aligned_cols=222 Identities=17% Similarity=0.195 Sum_probs=135.0
Q ss_pred cEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEecCcc
Q 044773 13 KGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVYSLSK 92 (289)
Q Consensus 13 ~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~s~sK 92 (289)
+.|++.--.-+||.+.+ +.+|+++..+|...+|+||.|+.... |.......+...- +..+.+++++|++-
T Consensus 235 rfiv~EGl~~N~g~i~p---l~~iv~lk~Kyk~RvildEs~SfG~l-g~~GrGvteH~~v------~~~~iDiv~~sm~~ 304 (467)
T KOG1358|consen 235 RFIVVEGLYANTGDICP---LPEIVKLKNKYKFRVILDESLSFGVL-GKTGRGVTEHFGV------PITDIDIVTASMET 304 (467)
T ss_pred EEEEEEeeccCCCcccc---cHHHHHHHhhheEEEEEecccccccc-cccCccccccCCC------Cccceeeeeecccc
Confidence 45555555667999999 99999999999999999999985444 3333344444332 34677899999999
Q ss_pred ccCCCCceEEEEEecCHHHHHHHH-hccccCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCc
Q 044773 93 DLGLPGFRVGAIYSNDDTVVAAAT-KMSSFGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEKA-GIS 170 (289)
Q Consensus 93 ~~g~~G~r~G~i~~~~~~~~~~~~-~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~ 170 (289)
+++..| |+.++ +..+.+.-+ ...++-..-++....+.++++.... .++--++.+.++.....+.+.|... ++.
T Consensus 305 alas~G---gFc~G-~~~i~~hQrLSg~~Y~fSAslPp~la~aa~~ai~i-~~~~p~~~~~L~~k~~~~H~~l~~~s~~~ 379 (467)
T KOG1358|consen 305 ALASGG---GFCAG-KSFIADHQRLSGSGYCFSASLPPYLAGAAIKAILI-EEWNPEIVQPLRAKVAKFHAALSSNSGFI 379 (467)
T ss_pred cccccC---ceeec-ceeeEeeeeccccceeeeccCchhhhhhHHHHHHH-HhhCcchhhhhhccccccchhhhcCCceE
Confidence 998777 88888 344332222 1222221222333333333333332 3334445666777666777777765 566
Q ss_pred eecCCceEEEEEecCccccCC--ChhhHHHHHHHHHHhcCeEEeCCCCCC----CCCCCeEEEEEec-CCHHHHHHHHHH
Q 044773 171 CLKSNAGLFCWVDMRHLLSSN--TFEAEMELWKKIVYDVKLNISPGSSCH----CTEPGWFRVCFAN-MSEDTLKLSMQR 243 (289)
Q Consensus 171 ~~~~~~g~~~~i~~~~~~~~~--~~~~~~~~~~~ll~~~gi~v~pg~~f~----~~~~~~~Ris~~~-~~~e~l~~~l~~ 243 (289)
+....-+..+.+.+....... ...--.+++..++.+ ++.+.....-- ...+..+||++.. ++++|++.+.+.
T Consensus 380 v~~~~~SPi~hl~l~~~~~s~e~e~~lL~eivd~~i~~-~~ll~~a~~~~~~e~~~~~pSiri~~~a~~seeel~ra~~~ 458 (467)
T KOG1358|consen 380 VSGSPESPIIHLQLERSYGSREKEEKLLEEIVDKCIAE-GVLLTRAKYLEKLERCPIPPSIRICVSAGMSEEELERAAEL 458 (467)
T ss_pred EecCcCCceeeeeecccccchHHHHHHHHHHHHHHHhh-cceehhhhhhhhcccCCCCCcEEEEEeCCCCHHHHHHHHHH
Confidence 665554555556666532221 001112366666655 77765332211 1234579999954 899999999999
Q ss_pred HHHHHHH
Q 044773 244 LKAFVDS 250 (289)
Q Consensus 244 l~~~l~~ 250 (289)
+++....
T Consensus 459 ik~~~~~ 465 (467)
T KOG1358|consen 459 IKEVASA 465 (467)
T ss_pred HHHHHHh
Confidence 9887654
No 351
>KOG2862 consensus Alanine-glyoxylate aminotransferase AGT1 [General function prediction only]
Probab=98.84 E-value=1.4e-06 Score=74.54 Aligned_cols=219 Identities=19% Similarity=0.191 Sum_probs=142.6
Q ss_pred hHHHhhhCCCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCC
Q 044773 2 YQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVW 81 (289)
Q Consensus 2 l~~~~~~~~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 81 (289)
+++.+..+ +++++++++-..-||..-+ -++.+-++|++|++++++|.+-+ .++.++.- |.+
T Consensus 134 i~~~lsqh-~p~~vfv~hgdsSTgV~q~--~~~~~g~lc~k~~~lllVD~VaS---lggt~F~m-------------Dew 194 (385)
T KOG2862|consen 134 ITEKLSQH-KPKAVFVTHGDSSTGVLQD--LLAISGELCHKHEALLLVDTVAS---LGGTEFEM-------------DEW 194 (385)
T ss_pred HHHHHHhc-CCceEEEEecCccccccch--HHHHHHHHhhcCCeEEEEechhh---cCCcccee-------------hhh
Confidence 45677777 8999999988778888754 46677789999999999999988 44555432 566
Q ss_pred CceEEEecCccccCCC-CceEEEEEecCHHHHHHHHh-------------ccccC-----------CCChHHHHHHHHHh
Q 044773 82 NRVHIVYSLSKDLGLP-GFRVGAIYSNDDTVVAAATK-------------MSSFG-----------LVSSQTQYLLSALL 136 (289)
Q Consensus 82 ~~~i~i~s~sK~~g~~-G~r~G~i~~~~~~~~~~~~~-------------~~~~~-----------~~~~~~q~~~~~~l 136 (289)
+.++....--|++|+| | ++-|..++..+.....+ +..++ +++....+.+-++|
T Consensus 195 gVDvaytgSQKaL~aP~G--LsiisfS~ka~~~~~~rK~~~~~~yFd~~~~~~~wgc~~e~~~yhhT~pv~lly~Lr~AL 272 (385)
T KOG2862|consen 195 GVDVAYTGSQKALGAPAG--LSIISFSDKALEAIRDRKTKPVSFYFDILRLGNFWGCDGEPRAYHHTPPVQLLYSLRAAL 272 (385)
T ss_pred cccEEEecchhhcCCCCC--cceeecCHHHHHHHhhccCCceEEEEeHHhhcchhccCCcccccccCCcHHHHHHHHHHH
Confidence 7778777778999865 4 34455544333322211 01111 12334444444444
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceecCCc----eEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEe
Q 044773 137 SDKKFAQNYISENKKRLKQRHRKLVSGLEKAGISCLKSNA----GLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNIS 212 (289)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~----g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~ 212 (289)
... .++-+++.-++.++..++++..|+++|++....+- .-.-.+.++...+. -+++.++...+++.+.
T Consensus 273 ~~I--~eeGL~~~~~rH~e~s~~l~~~l~~~GLq~fv~~e~~rlptvttv~vp~gvDw------~dVv~~~~~~~~vei~ 344 (385)
T KOG2862|consen 273 ALI--AEEGLENSWRRHREMSKWLKLSLEALGLQLFVVDEELRLPTVTTVKVPYGVDW------KDVVAYAMSHYVVEIG 344 (385)
T ss_pred HHH--HHHHHHHHHHHHHHHHHHHHHHHHHhCccceecChhhccCcceeeecCCCCCH------HHHHHHHHHhcCEEec
Confidence 432 14447788888999999999999998875432221 01122455554443 4578888777777765
Q ss_pred CCCCCCCCCCCeEEEEE-ec-CCHHHHHHHHHHHHHHHHHH
Q 044773 213 PGSSCHCTEPGWFRVCF-AN-MSEDTLKLSMQRLKAFVDSI 251 (289)
Q Consensus 213 pg~~f~~~~~~~~Ris~-~~-~~~e~l~~~l~~l~~~l~~~ 251 (289)
.|- ++.....+||.+ +. -+.+.++..++.|+.++...
T Consensus 345 ggl--g~~~gKv~RIGl~gcna~~e~i~~v~~ll~~alq~~ 383 (385)
T KOG2862|consen 345 GGL--GPTVGKVFRIGLLGCNANVEYIDNVVELLKLALQRK 383 (385)
T ss_pred ccc--CCCcccEEEEEEeeccCCcHHHHHHHHHHHHHHhhc
Confidence 443 455678999999 43 46788888888888777653
No 352
>PF00202 Aminotran_3: Aminotransferase class-III; InterPro: IPR005814 Aminotransferases share certain mechanistic features with other pyridoxalphosphate-dependent enzymes, such as the covalent binding of the pyridoxalphosphate group to a lysine residue. On the basis of sequence similarity, these various enzymes can be grouped [] into subfamilies. One of these, called class-III, includes acetylornithine aminotransferase (2.6.1.11 from EC), which catalyzes the transfer of an amino group from acetylornithine to alpha-ketoglutarate, yielding N-acetyl-glutamic-5-semi-aldehyde and glutamic acid; ornithine aminotransferase (2.6.1.13 from EC), which catalyzes the transfer of an amino group from ornithine to alpha-ketoglutarate, yielding glutamic-5-semi-aldehyde and glutamic acid; omega-amino acid--pyruvate aminotransferase (2.6.1.18 from EC), which catalyzes transamination between a variety of omega-amino acids, mono- and diamines, and pyruvate; 4-aminobutyrate aminotransferase (2.6.1.19 from EC) (GABA transaminase), which catalyzes the transfer of an amino group from GABA to alpha-ketoglutarate, yielding succinate semialdehyde and glutamic acid; DAPA aminotransferase (2.6.1.62 from EC), a bacterial enzyme (bioA), which catalyzes an intermediate step in the biosynthesis of biotin, the transamination of 7-keto-8-aminopelargonic acid to form 7,8-diaminopelargonic acid; 2,2-dialkylglycine decarboxylase (4.1.1.64 from EC), a Burkholderia cepacia (Pseudomonas cepacia) enzyme (dgdA) that catalyzes the decarboxylating amino transfer of 2,2-dialkylglycine and pyruvate to dialkyl ketone, alanine and carbon dioxide; glutamate-1-semialdehyde aminotransferase (5.4.3.8 from EC) (GSA); Bacillus subtilis aminotransferases yhxA and yodT; Haemophilus influenzae aminotransferase HI0949; and Caenorhabditis elegans aminotransferase T01B11.2.; GO: 0008483 transaminase activity, 0030170 pyridoxal phosphate binding; PDB: 2JJE_A 2CJH_A 2CIN_A 2JJH_A 2JJF_A 2JJG_A 2CJG_A 2CJD_A 3BS8_A 2YKX_C ....
Probab=98.82 E-value=1.9e-08 Score=90.03 Aligned_cols=112 Identities=21% Similarity=0.191 Sum_probs=72.1
Q ss_pred CccEEEEeCC-CCCCcc-CCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEe
Q 044773 11 KVKGVLVTNP-SNPLGT-TMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVY 88 (289)
Q Consensus 11 ~~~~i~l~~p-~NPtG~-~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~ 88 (289)
++-+ ++..| +.-.|. .++.+.+++|.++|+++|+++|+||++.+++.+|..+.. +... ...-+.
T Consensus 177 ~iaa-vivEPi~g~~G~~~~~~~~l~~l~~lc~~~gillI~DEV~tG~gRtG~~~a~--~~~g-----------v~PDiv 242 (339)
T PF00202_consen 177 EIAA-VIVEPIQGEGGMIPPPPEYLRELRELCREHGILLIADEVQTGFGRTGKFFAS--EHYG-----------VDPDIV 242 (339)
T ss_dssp GEEE-EEEESSBTTTTSBEE-TTHHHHHHHHHHHTT-EEEEEETTTTTTTTSSSSGH--HHHT-----------SSSSEE
T ss_pred cEEE-EEEeccccccCccccccchhhehcccccccccceecccccccccccCCccce--eccc-----------ccCccc
Confidence 4555 55556 444454 457789999999999999999999999998777764321 1111 111245
Q ss_pred cCccccCCCCceEEEEEecCHHHHHHHHh--ccccCCCChHHHHHHHHHhCC
Q 044773 89 SLSKDLGLPGFRVGAIYSNDDTVVAAATK--MSSFGLVSSQTQYLLSALLSD 138 (289)
Q Consensus 89 s~sK~~g~~G~r~G~i~~~~~~~~~~~~~--~~~~~~~~~~~q~~~~~~l~~ 138 (289)
+++|.++ .|+++|.+++++ .+.+.+.. ..+.+..+++...++.+.|+.
T Consensus 243 ~~gK~l~-gG~p~sav~~~~-~i~~~~~~~~~~~T~~g~p~~~aaa~~~l~~ 292 (339)
T PF00202_consen 243 TFGKGLG-GGLPISAVLGSE-EIMEAFQPGSHGSTFGGNPLSCAAALATLEI 292 (339)
T ss_dssp EEEGGGG-TTSSEEEEEEEH-HHHTTSCTTSSTCTTTT-HHHHHHHHHHHHH
T ss_pred ccccchh-hhhhcccccccc-hhhccccccccccccccchHhhhhhhhHHHh
Confidence 5679998 779999999954 44443322 223333677777777666664
No 353
>COG1103 Archaea-specific pyridoxal phosphate-dependent enzymes [General function prediction only]
Probab=98.80 E-value=4.7e-07 Score=76.00 Aligned_cols=220 Identities=14% Similarity=0.156 Sum_probs=129.5
Q ss_pred hHHHhhhC-CCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCC
Q 044773 2 YQLAQKRH-LKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEV 80 (289)
Q Consensus 2 l~~~~~~~-~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 80 (289)
+++...+. ..+.+.++++|..--|.+.+ -++++++|+++++.+++..+|.- |..+.+..++
T Consensus 146 iee~~~~~g~~~~lallTh~Dg~YGNl~D---akkva~ic~e~gvPlllN~AYt~----Grmpvs~ke~----------- 207 (382)
T COG1103 146 IEEVKDEGGDPPALALLTHVDGEYGNLAD---AKKVAKICREYGVPLLLNCAYTV----GRMPVSGKEI----------- 207 (382)
T ss_pred HHHHHhccCCCceEEEEeccCCCcCCchh---hHHHHHHHHHcCCceEeecceee----cccccccccc-----------
Confidence 45555554 35778899999655677655 89999999999999999999984 5555665555
Q ss_pred CCceEEEecCccccCCCCceEEEEEecCHHHHHHHHhcc-c--------cCCCChHHHHHHHHHhCCchHHHHHHHHHHH
Q 044773 81 WNRVHIVYSLSKDLGLPGFRVGAIYSNDDTVVAAATKMS-S--------FGLVSSQTQYLLSALLSDKKFAQNYISENKK 151 (289)
Q Consensus 81 ~~~~i~i~s~sK~~g~~G~r~G~i~~~~~~~~~~~~~~~-~--------~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~ 151 (289)
+-+++++|-+|+|. ..-++|.+..+. ...+.+-+.+ . ...+++ .-..+..++.+-....+-.++- +
T Consensus 208 -g~DFiVgSGHKsmA-As~PiGvl~~~e-E~ae~V~r~Sg~~~~~KEvellGCT~-rGapivTlmASfP~V~eRVkrW-d 282 (382)
T COG1103 208 -GADFIVGSGHKSMA-ASAPIGVLAMSE-EWAEIVLRRSGRAFPKKEVELLGCTV-RGAPIVTLMASFPHVVERVKRW-D 282 (382)
T ss_pred -CCCEEEecCccchh-ccCCeeEEeehh-HHHHHHHhhcccccccceeeeecccc-cCchHHHHHhcCHHHHHHHHHH-H
Confidence 45599999999997 555899999854 4444333222 1 121332 2222333333322111111111 1
Q ss_pred HHHHHHHHHHHHHHhcC-Ccee--cCCceEEEEEecCcc--ccCCChhhHHHHHHHHHHhcCeE-EeCCCCCCCCCCCeE
Q 044773 152 RLKQRHRKLVSGLEKAG-ISCL--KSNAGLFCWVDMRHL--LSSNTFEAEMELWKKIVYDVKLN-ISPGSSCHCTEPGWF 225 (289)
Q Consensus 152 ~~~~~~~~l~~~l~~~g-~~~~--~~~~g~~~~i~~~~~--~~~~~~~~~~~~~~~ll~~~gi~-v~pg~~f~~~~~~~~ 225 (289)
.--++.+++.+.|+++| +.-. .|...=.+.+..|.. +.+.......-+...| ++.||. ++||. ..++
T Consensus 283 eEv~kaR~fv~elEkigg~~qlG~rPk~HdLm~Fetp~f~eIakk~~r~gyFlY~EL-K~RgI~GI~~G~------Tk~~ 355 (382)
T COG1103 283 EEVEKARWFVAELEKIGGVKQLGERPKNHDLMKFETPVFHEIAKKHKRKGYFLYEEL-KKRGIHGIQPGQ------TKYF 355 (382)
T ss_pred HHHHHHHHHHHHHHHhhhHHHhCCCCcccceeeecCchHHHHHHhCcCCceeeHHHH-HhcCccccccCc------eeEE
Confidence 12234567888888873 4322 233222232333321 0000000001134444 455765 45543 4689
Q ss_pred EEEEecCCHHHHHHHHHHHHHHHHHH
Q 044773 226 RVCFANMSEDTLKLSMQRLKAFVDSI 251 (289)
Q Consensus 226 Ris~~~~~~e~l~~~l~~l~~~l~~~ 251 (289)
.+|+-.++.|+++..+++++++++++
T Consensus 356 K~svyGl~~Eqve~V~~afkeI~eky 381 (382)
T COG1103 356 KLSVYGLSWEQVEYVVDAFKEIAEKY 381 (382)
T ss_pred EEEeecCCHHHHHHHHHHHHHHHHhc
Confidence 99995479999999999999999875
No 354
>TIGR00461 gcvP glycine dehydrogenase (decarboxylating). This apparently ubiquitous enzyme is found in bacterial, mammalian and plant sources. The enzyme catalyzes the reaction: GLYCINE + LIPOYLPROTEIN = S-AMINOMETHYL-DIHYDROLIPOYLPROTEIN + CO2. It is part of the glycine decarboxylase multienzyme complex (GDC) consisting of four proteins P, H, L and T. Active site in E.coli is located as the (K) residues at position 713 of the SEED alignment.
Probab=98.78 E-value=1.3e-06 Score=86.46 Aligned_cols=225 Identities=15% Similarity=0.090 Sum_probs=133.0
Q ss_pred hHHHhhh-CCCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCC
Q 044773 2 YQLAQKR-HLKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEV 80 (289)
Q Consensus 2 l~~~~~~-~~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 80 (289)
|++.+.+ ..++++|++++|+| +|..-+ ++++|.++|+++|..+++|-++..- ..+.. ... .
T Consensus 618 L~~~i~~~~~~taaV~iT~pst-~G~~e~--~I~eI~~iah~~G~~v~VDgAq~~a-l~~l~--~Pg------------~ 679 (939)
T TIGR00461 618 LKNKAEQHGDELAAVMVTYPST-HGVFEP--TIQHACDIVHSFGGQVYLDGANMNA-QVGLT--SPG------------D 679 (939)
T ss_pred HHHHHhhcCCceEEEEEEeCCc-Cceecc--cHHHHHHHHHHcCCEEEEEecChhh-CCCCC--Ccc------------c
Confidence 3455543 24789999999999 687643 4999999999999999999999631 11111 111 3
Q ss_pred CCceEEEecCccccC----CCCceEEEEEecCHHHHHHHHhc------------cccC-----CCCh-HHHHHHHHHhCC
Q 044773 81 WNRVHIVYSLSKDLG----LPGFRVGAIYSNDDTVVAAATKM------------SSFG-----LVSS-QTQYLLSALLSD 138 (289)
Q Consensus 81 ~~~~i~i~s~sK~~g----~~G~r~G~i~~~~~~~~~~~~~~------------~~~~-----~~~~-~~q~~~~~~l~~ 138 (289)
.+-+++++|.+|+|+ .+|--+|.+.+++. +..++... .+.. +.++ .....+..++..
T Consensus 680 ~GaDi~~~s~HKtf~~P~G~GGPg~G~i~vr~~-L~~~lPg~~v~~t~d~~greq~Iga~s~~~~g~a~~~l~a~~yi~~ 758 (939)
T TIGR00461 680 LGADVCHLNLHKTFCIPHGGGGPGMGPIGVKSH-LIPFLPKHDVVSMITGIGGSKSIGSVSAAPYGSASILPISWMYIKM 758 (939)
T ss_pred cCCCEEEecCCccCCCCCCCCCCCeEEEEEhhh-chhhcCCCcccccccCCCCccccccccccccCcHHHHHHHHHHHHH
Confidence 366799999999775 34566899998643 22221100 0000 1111 112223333332
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceecC-CceE-E--EEEecCccccCCChhhHHHHHHHHHHhcCeEEeCC
Q 044773 139 KKFAQNYISENKKRLKQRHRKLVSGLEKAGISCLKS-NAGL-F--CWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPG 214 (289)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~-~~g~-~--~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg 214 (289)
.. .+-+++..+..-.+.+++.+.|.+ ++++.-+ ..+. + +.++++....... ....+++++|+ ++|+.-.-
T Consensus 759 lG--~~GL~~~a~~ailnAnYl~~rL~~-~~~~l~~~~~~~~~hEfv~~~~~~~~~~g-~~~~dIakrL~-d~G~hapt- 832 (939)
T TIGR00461 759 MG--NEGLPKASVVAILNANYMATRLKD-HYPILFVGTLKHVAHECILDLRPLKAKTG-IEAIDVAKRLQ-DYGFHAPT- 832 (939)
T ss_pred HC--HHHHHHHHHHHHHHHHHHHHHhhc-cCcccccCCCCceeEEEEEeccchhhhcC-CCHHHHHHHHH-hCCeeccc-
Confidence 11 333677777777888999999987 4444332 2222 1 3345542111111 22356888887 66997432
Q ss_pred CCCCCCCCCeEEEEEec-CCHHHHHHHHHHHHHHHHHHHH
Q 044773 215 SSCHCTEPGWFRVCFAN-MSEDTLKLSMQRLKAFVDSITT 253 (289)
Q Consensus 215 ~~f~~~~~~~~Ris~~~-~~~e~l~~~l~~l~~~l~~~~~ 253 (289)
..|.. .+.+-|.+.- .+.+|||++++.+.++-++...
T Consensus 833 ~~~pv--~g~lmiepTE~eskeelD~f~~al~~I~~e~~~ 870 (939)
T TIGR00461 833 LSFPV--PGTLMVEPTESESLEELDRFCDAMIAIKEEINA 870 (939)
T ss_pred cCCcc--CCeEEEEeeccCCHHHHHHHHHHHHHHHHHHHH
Confidence 33322 3344444432 5899999999999888777655
No 355
>KOG1403 consensus Predicted alanine-glyoxylate aminotransferase [General function prediction only]
Probab=98.78 E-value=6.9e-07 Score=76.03 Aligned_cols=224 Identities=12% Similarity=0.151 Sum_probs=134.7
Q ss_pred HhhhCCCccEEEEeCCCCCCccCCCHH-HHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCc
Q 044773 5 AQKRHLKVKGVLVTNPSNPLGTTMSRN-ELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNR 83 (289)
Q Consensus 5 ~~~~~~~~~~i~l~~p~NPtG~~~~~~-~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 83 (289)
.+.+..++.+.+-.+-+.=.|+++|+. ..+.+++..+.+|-+.|.||++.+++.-|..++++. .++.
T Consensus 203 ~~~~g~gvAAfiAEslQSCGGQiiPPagYFq~Va~~Vr~aGGv~IaDEVQvGFGRvG~hyWafq------------~y~f 270 (452)
T KOG1403|consen 203 QLAKGQGVAAFIAESLQSCGGQIIPPAGYFQAVADAVRSAGGVCIADEVQVGFGRVGSHYWAFQ------------TYNF 270 (452)
T ss_pred HHhcCCcHHHHHHHHHHhcCCcccCchhHHHHHHHHHhcCCCeEEeehhhhcccccchhhhhhh------------hhcc
Confidence 334433444433333345567777655 789999999999999999999998766566555432 3355
Q ss_pred eEEEecCccccCCCCceEEEEEecCHHHHHHHHh-----ccccCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHH
Q 044773 84 VHIVYSLSKDLGLPGFRVGAIYSNDDTVVAAATK-----MSSFGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHR 158 (289)
Q Consensus 84 ~i~i~s~sK~~g~~G~r~G~i~~~~~~~~~~~~~-----~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 158 (289)
+.-+-++.|.+| .|.+++.++. .+.+.+.+.. +++++ .|+.+.++..+.+..-+ ++.+. .+.++.-+
T Consensus 271 iPDIVtmgKpmG-NGhPVa~Vat-tkeIA~Af~atgv~YFNTyG-GnPVsCAv~laVm~v~e--~E~Lq---~ha~~vG~ 342 (452)
T KOG1403|consen 271 IPDIVTMGKPMG-NGHPVAAVAT-TKEIAQAFHATGVEYFNTYG-GNPVSCAVGLAVMRVCE--DENLQ---EHAQQVGE 342 (452)
T ss_pred ccchheecccCC-CCCeeeEEec-cHHHHHHhccccceehhccC-CCchhHHHHHHHHHHHh--hhhHH---HHHHHHHH
Confidence 556788999999 9999999999 4556665543 34454 67777666555554221 12222 22333333
Q ss_pred HHHHHHHhc--CCceecC--CceEEEEEecCccccC--CChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEEe-c
Q 044773 159 KLVSGLEKA--GISCLKS--NAGLFCWVDMRHLLSS--NTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFA-N 231 (289)
Q Consensus 159 ~l~~~l~~~--g~~~~~~--~~g~~~~i~~~~~~~~--~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ris~~-~ 231 (289)
.|...|.++ ..++.+. .-|.|+-+++-+.-.. +....+.-+...|.+.++|.+..-. +..+-+.|-+. .
T Consensus 343 ~L~~lL~~~k~kh~~IGDvRGvGLFiGIdLVkD~~tRtP~tk~A~~~v~rlke~y~VLlsaDG----Ph~NilKiKPPmC 418 (452)
T KOG1403|consen 343 KLEVLLRRLKQKHECIGDVRGVGLFIGIDLVKDRKTRTPDTKEAHWVVNRLKELYRVLLSADG----PHRNILKIKPPMC 418 (452)
T ss_pred HHHHHHHHHhhhccceeccccceEEEeeeeecccccCCCcHHHHHHHHHHHHHhhhEEEecCC----CCCceeecCCCcc
Confidence 344444333 2334332 3367777776653221 2223333466677778888887421 23456666652 2
Q ss_pred CCHHHHHHHHHHHHHHHHHHH
Q 044773 232 MSEDTLKLSMQRLKAFVDSIT 252 (289)
Q Consensus 232 ~~~e~l~~~l~~l~~~l~~~~ 252 (289)
-++++.++.+..|.+++..+.
T Consensus 419 Fneena~e~v~~ld~iLT~me 439 (452)
T KOG1403|consen 419 FNEENADEFVLGLDEILTVME 439 (452)
T ss_pred cChhhHHHHHHHHHHHHHHHH
Confidence 467888888887777766443
No 356
>PLN02452 phosphoserine transaminase
Probab=98.76 E-value=7.2e-07 Score=80.53 Aligned_cols=202 Identities=15% Similarity=0.119 Sum_probs=129.0
Q ss_pred hhCCCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEE
Q 044773 7 KRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHI 86 (289)
Q Consensus 7 ~~~~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~ 86 (289)
..+++++.+.+++..-.||..++ +++++. ++.+|+|.+.+- +..+.++.++ + +.
T Consensus 141 ~~~~~~~~v~~~hnETstGv~~~--~~~~i~------~~~lvVDa~Ss~----g~~pidv~~~------------~--v~ 194 (365)
T PLN02452 141 ELTPDAKFVHICANETIHGVEFK--DYPDVG------NVPLVADMSSNF----LSKPVDVSKY------------G--VI 194 (365)
T ss_pred CCCCCCcEEEECCCCCCCcEecC--cccccC------CCeEEEECCccc----cCcccCHHHc------------C--EE
Confidence 34457888888876668899754 254443 389999999983 3333444433 3 34
Q ss_pred EecCccccCCCCceEEEEEecCHHHHHHHH-------------hccccCCCChHHHHHHHHHhCCchHHHH--HHHHHHH
Q 044773 87 VYSLSKDLGLPGFRVGAIYSNDDTVVAAAT-------------KMSSFGLVSSQTQYLLSALLSDKKFAQN--YISENKK 151 (289)
Q Consensus 87 i~s~sK~~g~~G~r~G~i~~~~~~~~~~~~-------------~~~~~~~~~~~~q~~~~~~l~~~~~~~~--~~~~~~~ 151 (289)
..|..|.+|.+| +|.++++++.+..... ....+++++....+++..+++. +.+ -++.+.+
T Consensus 195 ~~saqK~lGP~G--l~~v~vr~~~l~~~~~~~~~~~~~~~~~~~~s~~~TP~v~~i~~l~~aL~~---l~~~gGl~~~~~ 269 (365)
T PLN02452 195 YAGAQKNVGPSG--VTIVIIRKDLIGNARPITPGMLDYKIHAENDSLYNTPPCFGIYMCGLVFED---LLAQGGLKAMEK 269 (365)
T ss_pred EEecccccCCCC--eEEEEEcHHHHhhcccCCCchhhHHHHHhcCCccCChhHHHHHHHHHHHHH---HHHccCHHHHHH
Confidence 469999999778 7888886655533111 1111223333444444444442 233 2788889
Q ss_pred HHHHHHHHHHHHHHhc-CCcee--cC--CceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEE
Q 044773 152 RLKQRHRKLVSGLEKA-GISCL--KS--NAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFR 226 (289)
Q Consensus 152 ~~~~~~~~l~~~l~~~-g~~~~--~~--~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~R 226 (289)
+.+++.+++++.|++. |+... .+ .+.+.+.+.++... ...++...+ ++.|+...+|..-- +.+|
T Consensus 270 r~~~~a~~l~~~l~~~~G~y~~~~~~~~rs~~~vsF~~~~~~------~~~~f~~~~-~~~g~~~~~G~r~~----gg~R 338 (365)
T PLN02452 270 RNIRKADLLYDAIDESNGFYVCPVEKSVRSLMNVPFTLGGSE------LEAEFVKEA-AKAGMVQLKGHRSV----GGMR 338 (365)
T ss_pred HHHHHHHHHHHHHHhCCCcccCCCChHHhCCeEEEEEcCCch------hHHHHHHHH-HHCCCcccCCcccc----CceE
Confidence 9999999999999986 66111 11 23445556655421 223466655 58899999987532 2399
Q ss_pred EEE-ecCCHHHHHHHHHHHHHHHHH
Q 044773 227 VCF-ANMSEDTLKLSMQRLKAFVDS 250 (289)
Q Consensus 227 is~-~~~~~e~l~~~l~~l~~~l~~ 250 (289)
+|+ ..++.++++.+++.++++.++
T Consensus 339 ~s~yna~~~~~v~~L~~~m~~f~~~ 363 (365)
T PLN02452 339 ASIYNAMPLAGVEKLVAFMKDFQAK 363 (365)
T ss_pred EECcCCCCHHHHHHHHHHHHHHHHh
Confidence 999 448999999999999988765
No 357
>PRK05367 glycine dehydrogenase; Provisional
Probab=98.76 E-value=1.3e-06 Score=87.39 Aligned_cols=226 Identities=14% Similarity=0.084 Sum_probs=129.4
Q ss_pred hHHHhhhC-CCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCC
Q 044773 2 YQLAQKRH-LKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEV 80 (289)
Q Consensus 2 l~~~~~~~-~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 80 (289)
|++++..+ .++.+|++++|++-.+...+ +++|+++|+++|+++++|.++..... +.. ... .
T Consensus 630 L~~~i~~~~~~la~V~it~pst~G~~e~~---I~eI~~i~h~~G~~v~VDgA~~~al~-~l~--~pg------------~ 691 (954)
T PRK05367 630 LRAKAEEHADNLAAIMITYPSTHGVFEET---IREICEIVHEHGGQVYLDGANMNAQV-GLA--RPG------------D 691 (954)
T ss_pred HHHHHhccCCCeEEEEEEcCCCCeeecCC---HHHHHHHHHHcCCEEEEECcChhhcc-CCC--Chh------------h
Confidence 34445442 35778889998765443445 99999999999999999999963211 111 111 2
Q ss_pred CCceEEEecCccccC----CCCceEEEEEecCHHHHHHHHhcc--------ccCCCC--hHHHH----HHHHHhCCchHH
Q 044773 81 WNRVHIVYSLSKDLG----LPGFRVGAIYSNDDTVVAAATKMS--------SFGLVS--SQTQY----LLSALLSDKKFA 142 (289)
Q Consensus 81 ~~~~i~i~s~sK~~g----~~G~r~G~i~~~~~~~~~~~~~~~--------~~~~~~--~~~q~----~~~~~l~~~~~~ 142 (289)
.+-++++++++|+|+ .+|-.+|.+.+++ .+...+.... ..+..+ +..+. .+..++....
T Consensus 692 ~GADi~~~s~HK~f~~P~G~GGPg~G~l~vr~-~l~p~lpg~~v~~~~~~~~~g~v~ta~~g~al~~~~a~~yi~~~G-- 768 (954)
T PRK05367 692 IGADVSHLNLHKTFCIPHGGGGPGVGPIGVKA-HLAPFLPGHPVQIAGGETGIGAVSAAPFGSASILPISWMYIRMMG-- 768 (954)
T ss_pred cCCCEEEecCcccCCCCcCCCCCceEEEeecc-cccccCCCCccCcCCCCCCcCcchhHHHHHHHHHHHHHHHHHHHC--
Confidence 245688999999975 2334488888853 2222221110 011111 12111 1122222211
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc-CCceecCCceEE--EEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCC
Q 044773 143 QNYISENKKRLKQRHRKLVSGLEKA-GISCLKSNAGLF--CWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHC 219 (289)
Q Consensus 143 ~~~~~~~~~~~~~~~~~l~~~l~~~-g~~~~~~~~g~~--~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~ 219 (289)
.+-+++..+..-.+.+++.+.|.+. .+.+..+.+.++ ..+++........ ....++++.|. ++|+...- ..|.
T Consensus 769 ~~Glr~~a~~~~~~A~Yl~~~L~~~~~~~~~~~~~~~~~e~i~~~~~~~~~~g-~~~~di~krL~-d~G~~~~t-~~~p- 844 (954)
T PRK05367 769 AEGLRQATEVAILNANYIAKRLKDHYPVLYTGANGRVAHECILDLRPLKESTG-ITVDDIAKRLI-DYGFHAPT-MSFP- 844 (954)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCccccCCCCCcccceEEEeecccccCC-CCHHHHHHHHH-HCCCeEee-cCCc-
Confidence 3335555565667888899999774 333332222110 2233321111001 12256888885 77998654 3332
Q ss_pred CCCCeEEEEEec-CCHHHHHHHHHHHHHHHHHHHH
Q 044773 220 TEPGWFRVCFAN-MSEDTLKLSMQRLKAFVDSITT 253 (289)
Q Consensus 220 ~~~~~~Ris~~~-~~~e~l~~~l~~l~~~l~~~~~ 253 (289)
..+.++|++.. .+.+|+|++++.|+.+.++...
T Consensus 845 -v~~~l~i~ptE~~s~~elDr~~~al~~i~~e~~~ 878 (954)
T PRK05367 845 -VAGTLMVEPTESESKAELDRFCDAMIAIRAEIDE 878 (954)
T ss_pred -cCCEEEEEeeecCCHHHHHHHHHHHHHHHHHHHH
Confidence 36789999954 7999999999999998887665
No 358
>TIGR00474 selA seryl-tRNA(sec) selenium transferase. In bacteria, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes SelA. This model excludes homologs that appear to differ in function from Frankia alni, Helicobacter pylori, Methanococcus jannaschii and other archaea, and so on.
Probab=98.67 E-value=1.1e-06 Score=81.31 Aligned_cols=208 Identities=19% Similarity=0.198 Sum_probs=113.6
Q ss_pred CCCccEEEEeCCCCCC--c--cCCCHHHHHHHHHHHHHcCCEEEEecCCCCCc----cCCCCccChhhhhhccccccCCC
Q 044773 9 HLKVKGVLVTNPSNPL--G--TTMSRNELNLLVNFITEKNIHLISDEIYSGTV----FSSPGFVSIMEILKDRNCENTEV 80 (289)
Q Consensus 9 ~~~~~~i~l~~p~NPt--G--~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~----~~~~~~~~~~~~~~~~~~~~~d~ 80 (289)
++++++|++++++||+ | .+.+ +++|+++|+++|+.+++|.....+. ++-...+.+.+.. .
T Consensus 209 ~~~T~lv~~~h~sN~~~~G~~~~~d---l~~I~~la~~~g~~vivD~~sG~l~~~~~~gl~~~p~~~~~~---------~ 276 (454)
T TIGR00474 209 TENTALLLKVHTSNYRIVGFTEEVS---IAELVALGREHGLPVMEDLGSGSLVDLSRYGLPDEPTVQEVI---------A 276 (454)
T ss_pred CcCCEEEEEEccCcccccCCCCCCC---HHHHHHHHHHcCCeEEEECCCcccccchhccCCCCcccccHh---------H
Confidence 3679999999999995 6 3566 9999999999999999997633210 1000111122221 2
Q ss_pred CCceEEEecCccccCCCCceEEEEEecCHHHHHHHHhcc--ccCCCChHHHH----HHHHHhCCch-HH----HHHHHHH
Q 044773 81 WNRVHIVYSLSKDLGLPGFRVGAIYSNDDTVVAAATKMS--SFGLVSSQTQY----LLSALLSDKK-FA----QNYISEN 149 (289)
Q Consensus 81 ~~~~i~i~s~sK~~g~~G~r~G~i~~~~~~~~~~~~~~~--~~~~~~~~~q~----~~~~~l~~~~-~~----~~~~~~~ 149 (289)
.+.++++.|.+|.+|.| ..|+++++++.+ +.++... ....+.-.... ++-.++.... ++ .+.+...
T Consensus 277 ~GaDiv~fSg~K~LgGp--~~G~i~g~~~~i-~~l~~~~l~r~lr~~k~~la~l~~~l~~~~~~~~a~~~~~~l~~l~~~ 353 (454)
T TIGR00474 277 AGVDLVTFSGDKLLGGP--QAGIIVGKKELI-ERLKKNPLTRALRVDKLTLAALEATLRLYLDPEKALEKIPTLRMLTQS 353 (454)
T ss_pred cCCCEEEecCccccCCC--eEEEEEECHHHH-HhhhhchhHHHHhhChHHHHHHHHHHHHHhCchhhhhhchHHHHhccC
Confidence 35568999999999645 479999965443 3222110 00011111112 2222222111 10 1223334
Q ss_pred HHHHHHHHHHHHHHHHhc---CC--ceecCC----c---------eEEEEEecCccccCCChhhHHHHHHHHHHhcCeEE
Q 044773 150 KKRLKQRHRKLVSGLEKA---GI--SCLKSN----A---------GLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNI 211 (289)
Q Consensus 150 ~~~~~~~~~~l~~~l~~~---g~--~~~~~~----~---------g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v 211 (289)
.+..+++.+.+.+.|++. ++ ++.+.. | ++-+.++... ....++...| ++....+
T Consensus 354 ~~~~~~~A~~la~~L~~~~~~~~~~~~~~~~~~~ggg~~p~~~l~~~~v~~~~~~-------~~~~~l~~~l-r~~~~~i 425 (454)
T TIGR00474 354 PEELRARAERLAKRLKAALGPGFELEIVPGLSQVGGGSLPDERLPSYAVTLTPDG-------LSAEKLEARL-RELPPPI 425 (454)
T ss_pred HHHHHHHHHHHHHHHHhhccCCceEEEEEcCCcccCCCCcCCCCCeEEEEEecCC-------CCHHHHHHHH-hcCCCCE
Confidence 456667788888888763 22 222222 1 2222232221 1123455554 4655444
Q ss_pred eCCCCCCCCCCCeEEEEEecCCHHHHHHHHHHH
Q 044773 212 SPGSSCHCTEPGWFRVCFANMSEDTLKLSMQRL 244 (289)
Q Consensus 212 ~pg~~f~~~~~~~~Ris~~~~~~e~l~~~l~~l 244 (289)
..- ..++.+.+.+-.+.++|++.+++++
T Consensus 426 i~r-----~~~~~~~ld~r~~~~~~~~~~~~~~ 453 (454)
T TIGR00474 426 IGR-----IEDDRFLLDLRTLLEDEEELLIEAL 453 (454)
T ss_pred EEE-----EECCEEEEEeCcCCHHHHHHHHHHh
Confidence 321 2356788888667889999888775
No 359
>PRK15407 lipopolysaccharide biosynthesis protein RfbH; Provisional
Probab=98.61 E-value=4e-06 Score=77.70 Aligned_cols=85 Identities=19% Similarity=0.293 Sum_probs=56.0
Q ss_pred CCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCc-cCCCCccChhhhhhccccccCCCCCceEEEe
Q 044773 10 LKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTV-FSSPGFVSIMEILKDRNCENTEVWNRVHIVY 88 (289)
Q Consensus 10 ~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~-~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~ 88 (289)
+++++|+++++ .|... ++++|.++|+++|++||+|++|+... +.|....+ + + ++.+.
T Consensus 158 ~~tkaVi~~~~---~G~p~---dl~~I~~la~~~gi~vIeDaa~a~G~~~~g~~~G~---~------------g-d~~~f 215 (438)
T PRK15407 158 PKTKAIMIAHT---LGNPF---DLAAVKAFCDKHNLWLIEDNCDALGSTYDGRMTGT---F------------G-DIATL 215 (438)
T ss_pred cCCeEEEEeCC---CCChh---hHHHHHHHHHHCCCEEEEECccchhhhcCCeeeec---c------------C-ceEEE
Confidence 57899999876 34333 58999999999999999999998432 22221111 1 1 24445
Q ss_pred cC--ccccCCCCceEEEEEecCHHHHHHHHhc
Q 044773 89 SL--SKDLGLPGFRVGAIYSNDDTVVAAATKM 118 (289)
Q Consensus 89 s~--sK~~g~~G~r~G~i~~~~~~~~~~~~~~ 118 (289)
|| +|.+. .|- -|+++++++.+.+.++.+
T Consensus 216 Sf~~~k~~~-~ge-GG~l~t~d~~l~~~~~~~ 245 (438)
T PRK15407 216 SFYPAHHIT-MGE-GGAVFTNDPLLKKIIESF 245 (438)
T ss_pred eCCCCCCcc-ccC-ceEEEECCHHHHHHHHHH
Confidence 55 46664 222 299999988887766544
No 360
>COG0399 WecE Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis [Cell envelope biogenesis, outer membrane]
Probab=98.60 E-value=1.6e-05 Score=71.37 Aligned_cols=93 Identities=14% Similarity=0.210 Sum_probs=62.8
Q ss_pred hHHHhhhCCCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCcc-CCCCccChhhhhhccccccCCC
Q 044773 2 YQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVF-SSPGFVSIMEILKDRNCENTEV 80 (289)
Q Consensus 2 l~~~~~~~~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~-~~~~~~~~~~~~~~~~~~~~d~ 80 (289)
+|+++. +++|+|+..+- -|...+ +++|.++|++||++||+|.+++.... .|....++
T Consensus 115 ie~aIt--~~tKAIipVhl---~G~~~d---m~~i~~la~~~~l~vIEDaAqa~Ga~y~gk~vGt~-------------- 172 (374)
T COG0399 115 IEAAIT--PRTKAIIPVHL---AGQPCD---MDAIMALAKRHGLPVIEDAAQAHGATYKGKKVGSF-------------- 172 (374)
T ss_pred HHHHcc--cCCeEEEEehh---ccCCCC---HHHHHHHHHHcCCeEEEEcchhccCeecCcccccc--------------
Confidence 455555 45999888865 466666 99999999999999999999984322 23322221
Q ss_pred CCceEEEecCccccCCCCceEEEEEecCHHHHHHHHhc
Q 044773 81 WNRVHIVYSLSKDLGLPGFRVGAIYSNDDTVVAAATKM 118 (289)
Q Consensus 81 ~~~~i~i~s~sK~~g~~G~r~G~i~~~~~~~~~~~~~~ 118 (289)
.+..++-.=-+|.++.. -=|.++++++.+.+.++.+
T Consensus 173 Gd~~~fSF~~~K~ittg--EGGav~tnd~ela~k~~~l 208 (374)
T COG0399 173 GDIGAFSFHATKNLTTG--EGGAVVTNDEELAEKARSL 208 (374)
T ss_pred cceEEEEecCCCCcccc--CceEEEeCCHHHHHHHHHH
Confidence 11223333446888733 3399999999988877654
No 361
>TIGR01365 serC_2 phosphoserine aminotransferase, Methanosarcina type. This model represents a variant form of the serine biosynthesis enzyme phosphoserine aminotransferase, as found in a small number of distantly related species, including Caulobacter crescentus, Mesorhizobium loti, and the archaeon Methanosarcina barkeri.
Probab=98.58 E-value=5.1e-06 Score=75.14 Aligned_cols=206 Identities=15% Similarity=0.119 Sum_probs=124.7
Q ss_pred EEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEecCcccc
Q 044773 15 VLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVYSLSKDL 94 (289)
Q Consensus 15 i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~s~sK~~ 94 (289)
|++++.--.||...+ ++++...+ +++++|+|.+-+ +++.+. .+ .+.++++.|.-|.+
T Consensus 131 v~~vhnETSTGv~np---v~~i~~~~--~~~lliVDavSs---~g~~~l-~~--------------d~iDv~~tgsQK~L 187 (374)
T TIGR01365 131 VVFTWNGTTSGVRVP---NGDFIPAD--REGLTICDATSA---AFAQDL-DY--------------HKLDVVTFSWQKVL 187 (374)
T ss_pred EEEecCCCchheecc---cccccccc--CCCcEEEEccch---hcCCCC-Ch--------------hHCcEEEEechhcc
Confidence 566666567899988 44444221 489999999988 434442 22 13568899999999
Q ss_pred CCCCceEEEEEecCHHHHHHHH--------hc-------------cccCCCChHHHHHHHHHhCCchHHHHH--HHHHHH
Q 044773 95 GLPGFRVGAIYSNDDTVVAAAT--------KM-------------SSFGLVSSQTQYLLSALLSDKKFAQNY--ISENKK 151 (289)
Q Consensus 95 g~~G~r~G~i~~~~~~~~~~~~--------~~-------------~~~~~~~~~~q~~~~~~l~~~~~~~~~--~~~~~~ 151 (289)
++|+ .+|+++.+++.+..... .+ ....+.+++...++..++....++.++ ++.+.+
T Consensus 188 ~~pp-Gls~v~vs~~Al~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~t~~TP~v~~l~a~~~~l~~i~~egGle~~~~ 266 (374)
T TIGR01365 188 GGEG-AHGMLILSPRAVARLESYTPAWPLPKIFRLTKGGKLNKKIFEGSTINTPSMLCVEDWLDALKWAESIGGLKPLIA 266 (374)
T ss_pred CCCC-ceEEEEECHHHHHHHhhcCCCCCChhhhccccccchhhhhhcCCCCCChHHHHHHHHHHHHHHHHHccCHHHHHH
Confidence 8554 36677776555533211 00 001123334444444444433333332 788889
Q ss_pred HHHHHHHHHHHHHHhcC-CceecC--C--ceEEEEEecCcc-cc--C-CChhh-HHHHHHHHHHhcCeEEeCCCCCCCCC
Q 044773 152 RLKQRHRKLVSGLEKAG-ISCLKS--N--AGLFCWVDMRHL-LS--S-NTFEA-EMELWKKIVYDVKLNISPGSSCHCTE 221 (289)
Q Consensus 152 ~~~~~~~~l~~~l~~~g-~~~~~~--~--~g~~~~i~~~~~-~~--~-~~~~~-~~~~~~~ll~~~gi~v~pg~~f~~~~ 221 (289)
+++++++.+++.++++| +..... + +.....+.++.+ .+ + +.-.+ ..++...+. ++||.+.+|.+- ..
T Consensus 267 Rh~~~a~~l~~~l~~lg~l~~~~~~~~~rS~tvt~v~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~gi~i~~G~~~--~~ 343 (374)
T TIGR01365 267 RADDNLAVLEAFVAKNNWIHFLAETPEIRSNTSVCLKVVDPAIDALDEDAQADFAKELISTLE-KEGVAYDIGSYR--DA 343 (374)
T ss_pred HHHHHHHHHHHHHHHCCCcccCCCChhhcCCCeEEEEeCCccccccccchhhHHHHHHHHHHH-HCCEEEeccccc--cC
Confidence 99999999999999998 665542 1 222233444332 11 0 00011 234555554 669999887653 22
Q ss_pred CCeEEEEE-ecCCHHHHHHHHHHHHHH
Q 044773 222 PGWFRVCF-ANMSEDTLKLSMQRLKAF 247 (289)
Q Consensus 222 ~~~~Ris~-~~~~~e~l~~~l~~l~~~ 247 (289)
...|||+. +.+++++++.+++.|.=+
T Consensus 344 ~~~fRIg~~G~i~~~di~~l~~~l~~~ 370 (374)
T TIGR01365 344 PSGLRIWCGATVEKSDLECLCPWLDWA 370 (374)
T ss_pred CCceEEecCCcCCHHHHHHHHHHHHHH
Confidence 46899999 668999999999888543
No 362
>PRK05367 glycine dehydrogenase; Provisional
Probab=98.58 E-value=5.7e-06 Score=82.95 Aligned_cols=196 Identities=11% Similarity=0.081 Sum_probs=118.8
Q ss_pred CccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEecC
Q 044773 11 KVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVYSL 90 (289)
Q Consensus 11 ~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~s~ 90 (289)
++-++++.+| |-+|.+.+ +++|+++|+++|+++++|-.+..+.. .. +.. ..+-++++++.
T Consensus 206 ~~~~vlvq~p-~~~G~i~d---~~~i~~~ah~~Gal~~vda~~~Al~~--l~--~pg------------e~GaDi~vgs~ 265 (954)
T PRK05367 206 DVFGVLLQYP-GTSGEVRD---YTALIAAAHARGALVAVAADLLALTL--LT--PPG------------EMGADIAVGSA 265 (954)
T ss_pred cEEEEEEecC-CCCeeecc---HHHHHHHHHHcCCEEEEEehhhhccC--CC--Chh------------hcCCCEEEeeC
Confidence 3445566666 56899987 99999999999999999876633212 11 222 33667999999
Q ss_pred ccc-----cCCCCceEEEEEecCHHHHHHHH-hcc-------------------------ccCCCChH---HHHHHHHHh
Q 044773 91 SKD-----LGLPGFRVGAIYSNDDTVVAAAT-KMS-------------------------SFGLVSSQ---TQYLLSALL 136 (289)
Q Consensus 91 sK~-----~g~~G~r~G~i~~~~~~~~~~~~-~~~-------------------------~~~~~~~~---~q~~~~~~l 136 (289)
.|. +|.|| .|++.++++ +.+.+. ... ...+.|.. ...++.+.+
T Consensus 266 qkfg~P~g~GGP~--aGflavr~~-~~r~lpgrivG~s~d~~g~~~~~lalqtReqhiRrekaTsNict~qaL~a~~a~~ 342 (954)
T PRK05367 266 QRFGVPMGFGGPH--AAYFAVRDA-YKRSMPGRIVGVSVDAAGNPALRLALQTREQHIRREKATSNICTAQVLLAVMASM 342 (954)
T ss_pred cccCCCCCCCCCC--EEEEEECHH-HHhhCCCCeeeeecccCCCcccccccccccccccccccccccchHHHHHHHHHHH
Confidence 987 55565 899999654 332221 000 00111111 111122111
Q ss_pred CCchHH-HHHHHHHHHHHHHHHHHHHHHHHhcCCceecCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCC
Q 044773 137 SDKKFA-QNYISENKKRLKQRHRKLVSGLEKAGISCLKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGS 215 (289)
Q Consensus 137 ~~~~~~-~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~ 215 (289)
. ..++ ..=+++..++...+.+++.+.|.+.|+++..+...-.+.++++. +..++.+.++ ++||.+..-
T Consensus 343 y-~~~~g~~Gl~~Ia~~~~~la~~l~~~L~~~G~~~~~~~~f~~~~~~~~~--------~~~~i~~~l~-~~gi~~~~~- 411 (954)
T PRK05367 343 Y-AVYHGPEGLKAIARRVHRLAAILAAGLRALGLEVVHDSFFDTLTVEVGG--------DAAAVLARAL-AAGINLRRV- 411 (954)
T ss_pred H-HHHHhhhhHHHHHHHHHHHHHHHHHHHHhcCcccCCCCCCCeEEEeCCC--------CHHHHHHHHH-HCCceeccc-
Confidence 1 1111 22267778888889999999998778776533211012233321 1245777776 669987321
Q ss_pred CCCCCCCCeEEEEEec-CCHHHHHHHHHHHH
Q 044773 216 SCHCTEPGWFRVCFAN-MSEDTLKLSMQRLK 245 (289)
Q Consensus 216 ~f~~~~~~~~Ris~~~-~~~e~l~~~l~~l~ 245 (289)
..+.+|+|+.. ++++|++.+++.+.
T Consensus 412 -----~~~~l~is~~e~~t~~did~l~~~l~ 437 (954)
T PRK05367 412 -----DDDHVGISLDETTTREDLAALLAVFG 437 (954)
T ss_pred -----cCCEEEEEecccCCHHHHHHHHHHHc
Confidence 14579999954 79999999999997
No 363
>PLN02263 serine decarboxylase
Probab=98.55 E-value=1.4e-05 Score=73.81 Aligned_cols=210 Identities=12% Similarity=0.062 Sum_probs=123.5
Q ss_pred hHHHhhhCCC-ccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCC-----EEEEecCCCCCccCCCCccChhhhhhcccc
Q 044773 2 YQLAQKRHLK-VKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNI-----HLISDEIYSGTVFSSPGFVSIMEILKDRNC 75 (289)
Q Consensus 2 l~~~~~~~~~-~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~-----~li~Dea~~~~~~~~~~~~~~~~~~~~~~~ 75 (289)
|++++.++.. +-+|+.+-.+-++|.+=+ +++|.++|+++|+ ++.+|.+|+++...-.........
T Consensus 218 L~~aI~~d~~~P~iVvataGTT~~GAiDp---i~eIa~i~~~~g~~~~~iwlHVDAA~GG~~lPf~~~~~~~df------ 288 (470)
T PLN02263 218 FKAKLLANKDKPAIINVNIGTTVKGAVDD---LDLVIKTLEECGFSQDRFYIHCDGALFGLMMPFVKRAPKVTF------ 288 (470)
T ss_pred HHHHHHhCCCCcEEEEEEecCCCCcCCCC---HHHHHHHHHHcCCccCCeeEEEeccchhhHhhhcccccccCC------
Confidence 5666655532 334445555778998766 9999999999986 999999998764411110110111
Q ss_pred ccCCCCCceEEEecCccccCCCCceEEEEEecCHHHHHHHHh-------ccccCCCChHH--HHHHHHHhCCchHHHHHH
Q 044773 76 ENTEVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDTVVAAATK-------MSSFGLVSSQT--QYLLSALLSDKKFAQNYI 146 (289)
Q Consensus 76 ~~~d~~~~~i~i~s~sK~~g~~G~r~G~i~~~~~~~~~~~~~-------~~~~~~~~~~~--q~~~~~~l~~~~~~~~~~ 146 (289)
....+-+..+.+|.++ ....+|.++.+++.+ +.+.. .......+... ...+...+.... .+-+
T Consensus 289 ----~~~vDSIsvD~HK~l~-~P~~cgvll~R~~~~-~~~~~~~~Yl~~~d~ti~gSR~g~~al~lW~~L~~~G--~~G~ 360 (470)
T PLN02263 289 ----KKPIGSVSVSGHKFVG-CPMPCGVQITRMEHI-NVLSSNVEYLASRDATIMGSRNGHAPIFLWYTLNRKG--YRGF 360 (470)
T ss_pred ----CcCccEEEECCccccC-CCcCEEEEEEehhhH-hhhccChHhhCCCCCCcCCCCCcHHHHHHHHHHHHhC--HHHH
Confidence 1124456779999987 668899999976543 22211 11111122222 233333343322 3445
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCceec-CCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeE
Q 044773 147 SENKKRLKQRHRKLVSGLEKAGISCLK-SNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWF 225 (289)
Q Consensus 147 ~~~~~~~~~~~~~l~~~l~~~g~~~~~-~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~ 225 (289)
++..+..-++.+++.+.|++.|+.... |.. ..+.+.-+. + +. ..+ |-.+.+ .+..+
T Consensus 361 ~~~i~~~~~~A~~l~~~l~~~g~~~~~~p~s-~~V~f~~p~--~--------~~---~~~--gW~L~~-------~~~~~ 417 (470)
T PLN02263 361 QKEVQKCLRNAHYLKDRLREAGISAMLNELS-STVVFERPK--D--------EE---FVR--RWQLAC-------QGNIA 417 (470)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCeEEeCCCc-eEEEEecCc--h--------HH---hhc--ceEEcc-------CCCcE
Confidence 666777778888899999988876544 444 344443221 1 11 112 333332 12358
Q ss_pred EEEEec-CCHHHHHHHHHHHHHHHHHH
Q 044773 226 RVCFAN-MSEDTLKLSMQRLKAFVDSI 251 (289)
Q Consensus 226 Ris~~~-~~~e~l~~~l~~l~~~l~~~ 251 (289)
+|++.. .+.+.++++++.|++.....
T Consensus 418 Hivvmphv~~~~id~fi~DL~~~~~~~ 444 (470)
T PLN02263 418 HVVVMPSVTIEKLDYFLKELVEKRSTW 444 (470)
T ss_pred EEEEcCCCCHHHHHHHHHHHHHHHhhh
Confidence 999854 58899999999998876643
No 364
>COG3844 Kynureninase [Amino acid transport and metabolism]
Probab=98.47 E-value=2e-05 Score=68.02 Aligned_cols=205 Identities=16% Similarity=0.136 Sum_probs=131.3
Q ss_pred CCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEec
Q 044773 10 LKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVYS 89 (289)
Q Consensus 10 ~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~s 89 (289)
.++.++++++.+.-||+.++ +.+|-.++++++++++.|-+|+...+. ..+ ...+-++.|++
T Consensus 165 dd~AvV~L~~V~y~TGql~d---m~aiT~~AH~~galv~wDLAHsaGavp----~~L------------h~~gaDfaigc 225 (407)
T COG3844 165 DDVAVVLLSHVNYKTGQLLD---MRAITALAHQHGALVGWDLAHSAGAVP----VDL------------HAAGADFAIGC 225 (407)
T ss_pred cceEEEEeccccccccceee---HHHHHHHHHhcCceEEeehhcccCCcc----eee------------cccCCCeeeee
Confidence 46888899999999999999 999999999999999999999853221 221 13466788999
Q ss_pred Ccccc-CCCCceEEEEEecCHHHHHHHH----------------hc------cccCC--CChHHHHHHHHHhCCchHHHH
Q 044773 90 LSKDL-GLPGFRVGAIYSNDDTVVAAAT----------------KM------SSFGL--VSSQTQYLLSALLSDKKFAQN 144 (289)
Q Consensus 90 ~sK~~-g~~G~r~G~i~~~~~~~~~~~~----------------~~------~~~~~--~~~~~q~~~~~~l~~~~~~~~ 144 (289)
.-|++ |.||-.-|.-+.+ ........ .+ ..+.+ .+.++..++...|.-.. +-
T Consensus 226 syKYLNgGPGapa~l~v~~-~h~e~~~~~lsgW~gha~pf~m~~~y~p~~ga~rf~~gt~~V~s~aal~~aLDifa--~~ 302 (407)
T COG3844 226 SYKYLNGGPGAPAGLFVAP-RHRERSWPPLSGWWGHARPFAMEEVYAPGPGARRFLCGTQPVLSLAALEGALDIFA--DV 302 (407)
T ss_pred eceeccCCCCCceeEEecc-ccccccccccccccCCCCcchhhhccCcCccccceeeCCcchhhhHHHhhhhhhhh--hc
Confidence 99999 3567655555543 22111111 11 11221 11233333333333221 22
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhc----CCceecCCc----eEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCC
Q 044773 145 YISENKKRLKQRHRKLVSGLEKA----GISCLKSNA----GLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSS 216 (289)
Q Consensus 145 ~~~~~~~~~~~~~~~l~~~l~~~----g~~~~~~~~----g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~ 216 (289)
.+.++|++--...+++.+.++.. ++++..|-. |-.+.+.-+. ..+....|. ++||. |..
T Consensus 303 ~i~~lR~kSlaLTd~fieLvEa~~~~~~l~l~tPr~~~~rGsqvS~~hp~---------~~~V~qaLi-~rGVi---gD~ 369 (407)
T COG3844 303 DITELRKKSLALTDYFIELVEARCEYYGLTLVTPRAHEERGSQVSLYHPH---------GYQVMQALI-DRGVI---GDF 369 (407)
T ss_pred CHHHHHHhhhHHHHHHHHHHHhccccCCcEEeccchhhhccceeeEecCc---------HHHHHHHHH-HcCcc---ccc
Confidence 27788888888888999998865 445544432 2233333332 234566665 77987 332
Q ss_pred CCCCCCCeEEEEEec--CCHHHHHHHHHHHHHHHHHHH
Q 044773 217 CHCTEPGWFRVCFAN--MSEDTLKLSMQRLKAFVDSIT 252 (289)
Q Consensus 217 f~~~~~~~~Ris~~~--~~~e~l~~~l~~l~~~l~~~~ 252 (289)
..+..+|+.++. ++-.++-.+++.|.+++++..
T Consensus 370 ---R~P~vlRfgftPlY~~~~DVw~AV~~L~evL~t~a 404 (407)
T COG3844 370 ---REPDVLRFGFTPLYVSFVDVWDAVDALEEVLDTLA 404 (407)
T ss_pred ---cCCCeeeecCccceechhHHHHHHHHHHHHHHhhc
Confidence 235789999953 688999999999999988653
No 365
>COG1982 LdcC Arginine/lysine/ornithine decarboxylases [Amino acid transport and metabolism]
Probab=98.42 E-value=1.1e-05 Score=75.24 Aligned_cols=91 Identities=19% Similarity=0.183 Sum_probs=67.4
Q ss_pred hHHHhhhCCCc-cEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCC
Q 044773 2 YQLAQKRHLKV-KGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEV 80 (289)
Q Consensus 2 l~~~~~~~~~~-~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 80 (289)
+++++..++.. |+++++||+. -|.+.+ +++|+++++.+++++.+|++|... ++-....+.... .
T Consensus 156 ~~~~l~~~~~~~k~~vitnpTY-dGv~~n---~~~i~~~~~~~~a~v~~deah~~~-~~~~~~l~~~~~----------~ 220 (557)
T COG1982 156 FKEALLAHPDAEKLAVITNPTY-DGVCYN---LRKIVELLHHYGAWVLYDEAHPAH-FDFSPMLPESAL----------N 220 (557)
T ss_pred HHHHHHhChhhheeEEEecCcc-ceEeec---HHHHHHHHhhcCceEEhhhcCccc-ccccccCcchhh----------h
Confidence 56777777788 9999999865 499999 899999999999999999999754 432222221111 2
Q ss_pred CCceEEEecCccccCCCCceEEEEEecC
Q 044773 81 WNRVHIVYSLSKDLGLPGFRVGAIYSND 108 (289)
Q Consensus 81 ~~~~i~i~s~sK~~g~~G~r~G~i~~~~ 108 (289)
...+++..|.+|.++ +....++|..++
T Consensus 221 ~~~~~~tqS~HK~l~-alSQaS~iHv~~ 247 (557)
T COG1982 221 GGADFVTQSTHKLLA-ALSQASMIHVKD 247 (557)
T ss_pred cCceEEEechhhhhh-hhhhhHHHhhCC
Confidence 367788999999996 555666776654
No 366
>KOG2467 consensus Glycine/serine hydroxymethyltransferase [Amino acid transport and metabolism]
Probab=98.41 E-value=3.5e-05 Score=67.54 Aligned_cols=218 Identities=14% Similarity=0.132 Sum_probs=132.4
Q ss_pred hHHHhhhCCCccEEEEeCCCCCCccCCCHH-HHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCC
Q 044773 2 YQLAQKRHLKVKGVLVTNPSNPLGTTMSRN-ELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEV 80 (289)
Q Consensus 2 l~~~~~~~~~~~~i~l~~p~NPtG~~~~~~-~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 80 (289)
||+..... ++|+|+.-. ..+++. +-.++.++|.+.|+++++|-+|-.........++.+++.
T Consensus 181 Le~~A~~f-rPk~iiaG~------SaY~R~~DYaR~R~Iad~~gA~Lm~DMAHISgLVAA~vipsPFey~---------- 243 (477)
T KOG2467|consen 181 LEKTATLF-RPKLIIAGT------SAYSRLIDYARFRKIADKVGAYLMADMAHISGLVAAGVIPSPFEYC---------- 243 (477)
T ss_pred HHHHHHhc-CCcEEEecc------ccchhhccHHHHHHHHHhcCceeehhhhhHHHHHhcccCCCccccc----------
Confidence 34444444 678755543 223333 477888888899999999999954333333344544443
Q ss_pred CCceEEEecCccccCCCCceEEEEEecC-----------HHHHH---HHHh--cccc-CCCChHHHHHHHHHhCCchHHH
Q 044773 81 WNRVHIVYSLSKDLGLPGFRVGAIYSND-----------DTVVA---AATK--MSSF-GLVSSQTQYLLSALLSDKKFAQ 143 (289)
Q Consensus 81 ~~~~i~i~s~sK~~g~~G~r~G~i~~~~-----------~~~~~---~~~~--~~~~-~~~~~~~q~~~~~~l~~~~~~~ 143 (289)
+|+..+.+|++ -|-|-|.|.-+. +...+ .++. +... +.++.....+++.+|+.-. .
T Consensus 244 ---DiVTTTTHKsL--RGPRg~mIFyRkGvk~~~~k~g~~i~ydlE~kINfaVFP~lQGGPHNhtIaalAvALkQa~--t 316 (477)
T KOG2467|consen 244 ---DIVTTTTHKSL--RGPRGAMIFYRKGVKSIKPKQGKEILYDLEDKINFAVFPGLQGGPHNHTIAALAVALKQAM--T 316 (477)
T ss_pred ---ceeeccccccc--cCCcceeEEEeccCCcCCCCCCCcceechhhhhhhhccccccCCCCcchHHHHHHHHHhhC--C
Confidence 38889999998 556668777532 11222 2221 1222 2244455566666666432 3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCceec-CCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCC---
Q 044773 144 NYISENKKRLKQRHRKLVSGLEKAGISCLK-SNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHC--- 219 (289)
Q Consensus 144 ~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~-~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~--- 219 (289)
...++-.++...+.+.|.+.|.+.|.+... ....-.+.+++...--. -.-++.+++..+|.+.--.-+|.
T Consensus 317 pefk~Yq~qV~~Nakala~~l~~~Gy~lvtgGTDnHlvLvDLr~~G~d------GarvE~vle~~~I~~NKNtvpGD~Sa 390 (477)
T KOG2467|consen 317 PEFKEYQKQVLKNAKALASALISRGYKLVTGGTDNHLVLVDLRPKGVD------GARVEKVLELCHIALNKNTVPGDKSA 390 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCceEecCCccceEEEEeccccCCc------hHHHHHHHHHhhhhhcCCcCCCCccc
Confidence 334666667778889999999999887654 33344555676653211 23566677777888654444442
Q ss_pred CCCCeEEEEEec-----CCHHHHHHHHHHHHHHHH
Q 044773 220 TEPGWFRVCFAN-----MSEDTLKLSMQRLKAFVD 249 (289)
Q Consensus 220 ~~~~~~Ris~~~-----~~~e~l~~~l~~l~~~l~ 249 (289)
.-++.+||.... ..++|+++..+-|.++++
T Consensus 391 l~PgGiRiGtPAmTsRG~~e~df~~v~~fi~~av~ 425 (477)
T KOG2467|consen 391 LSPGGIRIGTPAMTSRGFGEEDFEKVADFIDRAVK 425 (477)
T ss_pred cCCCceeccchhhcccCccHHHHHHHHHHHHHHHH
Confidence 236789998743 245778777777766654
No 367
>COG3033 TnaA Tryptophanase [Amino acid transport and metabolism]
Probab=98.40 E-value=3.5e-05 Score=67.45 Aligned_cols=227 Identities=16% Similarity=0.206 Sum_probs=147.2
Q ss_pred CccEEEEeCC-CCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCC-CCcc------CCCCccChhhhhhcc-ccccCCCC
Q 044773 11 KVKGVLVTNP-SNPLGTTMSRNELNLLVNFITEKNIHLISDEIYS-GTVF------SSPGFVSIMEILKDR-NCENTEVW 81 (289)
Q Consensus 11 ~~~~i~l~~p-~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~-~~~~------~~~~~~~~~~~~~~~-~~~~~d~~ 81 (289)
++..|+++-- |...|+..|-+.+++..++|++|++.++.|.+-. ...+ .+..-.++.++..++ ||
T Consensus 185 nvp~I~~tiT~NsagGQpVSm~n~r~v~~ia~ky~ipvv~Da~RfaENaYFIk~rE~gYrd~sI~~IarEm~sY------ 258 (471)
T COG3033 185 NVPYIVLTITNNSAGGQPVSMANMKAVYEIAKKYDIPVVMDAARFAENAYFIKQREPGYRDWSIEEIAREMYSY------ 258 (471)
T ss_pred cCcEEEEEEeccccCCCcchHHhHHHHHHHHHHcCCcEEeehhhhhhhhhhhhhcCcccccccHHHHHHHHHhh------
Confidence 3555555544 4466999999999999999999999999998742 2111 145567788877664 22
Q ss_pred CceEEEecCccccCC-CCceEEEEEecCHHH---HHHHH-------hccccCCCChHHHHHHHHHhCCchHHHHHHHHHH
Q 044773 82 NRVHIVYSLSKDLGL-PGFRVGAIYSNDDTV---VAAAT-------KMSSFGLVSSQTQYLLSALLSDKKFAQNYISENK 150 (289)
Q Consensus 82 ~~~i~i~s~sK~~g~-~G~r~G~i~~~~~~~---~~~~~-------~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~ 150 (289)
-+-+..|.-|---. -| |++..+++.. ....+ -+.+++..+.-...+++.-|.+.-. .+|++.+.
T Consensus 259 -aD~~~mS~KKD~lvnmG---Gfl~~~D~~~fDvy~~~~~~~V~~eG~~tYGgl~GrdmealAvGL~e~~~-~~yl~~Rv 333 (471)
T COG3033 259 -ADGCTMSAKKDGLVNMG---GFLCFKDDSFFDVYEECRTLVVVQEGFPTYGGLAGRDMEALAVGLREGVN-FDYLAHRV 333 (471)
T ss_pred -hhhheeeccccceeccc---cEEEecCccHHHHHHHHHhheEeeccccccCcccchhHHHHHHHHHHhcC-cHHHHHHH
Confidence 12234444443211 24 7777776643 22222 1244555555566666666665432 45555544
Q ss_pred HHHHHHHHHHHHHHHhcCCceecCCceEEEEEecCccccC--CChhhHHHHHHHHHHhcCeEEeCCCCCCC--CC-----
Q 044773 151 KRLKQRHRKLVSGLEKAGISCLKSNAGLFCWVDMRHLLSS--NTFEAEMELWKKIVYDVKLNISPGSSCHC--TE----- 221 (289)
Q Consensus 151 ~~~~~~~~~l~~~l~~~g~~~~~~~~g~~~~i~~~~~~~~--~~~~~~~~~~~~ll~~~gi~v~pg~~f~~--~~----- 221 (289)
.+ .++|.+.|.+.|+++..|.||--++++..+..+. .....+..++-.|-++.||-..--..|.. +.
T Consensus 334 ~Q----v~YL~~~l~~~GVpi~~paGGHavfvda~~~lphip~eqFpaqala~ely~e~GiRavElG~~~~~rd~ktg~q 409 (471)
T COG3033 334 AQ----VQYLADGLEEAGVPIVQPAGGHAVFVDAGKFLPHIPAEQFPAQALACELYKEAGIRAVELGSFSLGRDPKTGKQ 409 (471)
T ss_pred HH----HHHHHHHHHhcCCeeEecCCCceEEeehhhhcCCCChhhCcHHHHHHHHHHHhCeeeeeeeceecccCCCcccc
Confidence 33 3678999999999999999998898887765432 12244466888888899998654333321 11
Q ss_pred ----CCeEEEEEec--CCHHHHHHHHHHHHHHHHHHH
Q 044773 222 ----PGWFRVCFAN--MSEDTLKLSMQRLKAFVDSIT 252 (289)
Q Consensus 222 ----~~~~Ris~~~--~~~e~l~~~l~~l~~~l~~~~ 252 (289)
-..+|+++.. -+.+.+|-..+.++++.+...
T Consensus 410 ~~~~~elvRltipRrtYt~~HmD~V~~a~~~l~e~~~ 446 (471)
T COG3033 410 HPPPAELVRLTIPRRTYTQTHMDFVIEAFKALKENAE 446 (471)
T ss_pred CCCchheeeEeccccccchhHHHHHHHHHHHHHhccc
Confidence 1469999953 488999999999998887653
No 368
>PLN02414 glycine dehydrogenase (decarboxylating)
Probab=98.38 E-value=3.7e-05 Score=77.15 Aligned_cols=195 Identities=13% Similarity=0.091 Sum_probs=115.7
Q ss_pred EEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEecCccc
Q 044773 14 GVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVYSLSKD 93 (289)
Q Consensus 14 ~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~s~sK~ 93 (289)
.+++.+| |.+|.+.+ +++|.++|+++|+++++ .++. +....-. +..++ +-++++++..|.
T Consensus 237 ~vlvq~P-~~~G~v~d---v~~I~~~ah~~GaL~iV-aad~-lal~~l~--~pge~------------GADi~vgsgqKw 296 (993)
T PLN02414 237 GVLVQYP-ATDGEVLD---YAEFVKNAHANGVKVVM-ATDL-LALTMLK--PPGEW------------GADIVVGSAQRF 296 (993)
T ss_pred EEEEecC-CCCeEEcC---HHHHHHHHHHcCCEEEE-EECH-HHhcCCC--CHhhc------------cCcEEEECCCcc
Confidence 3344444 34899987 99999999999999999 5543 2222221 22223 566889998887
Q ss_pred c---CCCCceEEEEEecCHHHHHHHH-hcc-------------------------ccCCCChHHHHHHHHHhCCc--hHH
Q 044773 94 L---GLPGFRVGAIYSNDDTVVAAAT-KMS-------------------------SFGLVSSQTQYLLSALLSDK--KFA 142 (289)
Q Consensus 94 ~---g~~G~r~G~i~~~~~~~~~~~~-~~~-------------------------~~~~~~~~~q~~~~~~l~~~--~~~ 142 (289)
. |..|-+.|++.++++. .+.+. ..- ..++.|.....++.+.+... .++
T Consensus 297 g~P~G~GGP~aGflavr~~~-~r~~PgriVG~s~d~~g~~~~~l~LqtReqhiRrEkaTsNict~qaL~A~la~~y~~~~ 375 (993)
T PLN02414 297 GVPMGYGGPHAAFLATSQEY-KRLMPGRIIGVSVDSSGKPALRMAMQTREQHIRRDKATSNICTAQALLANMAAMYAVYH 375 (993)
T ss_pred ccCCCCCCCCeeEEEECHHH-HhhCCCcccCcccCCCCCcccccccccccchhhhcccccchhHHHHHHHHHHHHHHHHh
Confidence 6 2234459999996543 32221 000 01122222222322222211 011
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHHHhcCCceecCC-ceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCC
Q 044773 143 -QNYISENKKRLKQRHRKLVSGLEKAGISCLKSN-AGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCT 220 (289)
Q Consensus 143 -~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~-~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~ 220 (289)
..-+++..++..++..++.+.|.+.|+++..+. .+ .+.++++. ..++.+.|+ +.||.+....
T Consensus 376 g~~Gl~~Ia~ri~~la~~l~~~L~~~G~~~~~~~~f~-~vt~~~~~---------~~~v~~~L~-~~gI~l~~~~----- 439 (993)
T PLN02414 376 GPEGLKTIAQRVHGLAGVFAAGLKKLGFQVQSLPFFD-TVKVKCSD---------ADAIADAAA-KVGINLRVVD----- 439 (993)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHhhcCCccCCCCCcC-eEEEecCC---------HHHHHHHHH-HCCCeeEEec-----
Confidence 112566778888888999999988787765432 12 22234331 134666665 6699766321
Q ss_pred CCCeEEEEEec-CCHHHHHHHHHHHHH
Q 044773 221 EPGWFRVCFAN-MSEDTLKLSMQRLKA 246 (289)
Q Consensus 221 ~~~~~Ris~~~-~~~e~l~~~l~~l~~ 246 (289)
.+.+|+|+.. ++++|++.+++.|..
T Consensus 440 -~~~lrvs~~e~~T~edId~L~~~l~~ 465 (993)
T PLN02414 440 -ANTVTVSFDETTTLEDVDKLFKVFAG 465 (993)
T ss_pred -CCeEEEEeeccCCHHHHHHHHHHHcc
Confidence 3479999954 799999999999974
No 369
>PF01212 Beta_elim_lyase: Beta-eliminating lyase; InterPro: IPR001597 This domain is found in many tryptophanases (tryptophan indole-lyase, TNase), tyrosine phenol-lyases (TPL) and threonine aldolases. It is involved in the degradation of amino acids. The glycine cleavage system is composed of four proteins: P, T, L and H. In Bacillus subtilis, the P 'protein' is an heterodimer of two subunits. The glycine cleavage system catalyses the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; GO: 0016829 lyase activity, 0006520 cellular amino acid metabolic process; PDB: 3PJ0_C 2C44_C 2V0Y_A 2OQX_A 2V1P_A 1AX4_B 3LWS_A 1C7G_A 1V72_A 2YHK_B ....
Probab=98.36 E-value=2.5e-07 Score=80.78 Aligned_cols=146 Identities=21% Similarity=0.217 Sum_probs=82.7
Q ss_pred CCccEEEEeCCCCC-CccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEe
Q 044773 10 LKVKGVLVTNPSNP-LGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVY 88 (289)
Q Consensus 10 ~~~~~i~l~~p~NP-tG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~ 88 (289)
+++++|++++|+|. .|++++.+++++|.++|+++|+.++.|-+--.... .....++.++.. ..+.+..
T Consensus 123 ~~~~~v~le~t~~~~GG~~~s~~el~ai~~~a~~~gl~lhmDGARl~~a~-~~~~~~~~e~~~----------~~D~v~~ 191 (290)
T PF01212_consen 123 PQPAVVSLENTTELAGGTVYSLEELRAISELAREHGLPLHMDGARLANAA-AALGVSLAEIAA----------GADSVSF 191 (290)
T ss_dssp GGEEEEEEESSBTTTTSB---HHHHHHHHHHHHHHT-EEEEEETTHHHHH-CHHHHHHHHHHT----------TSSEEEE
T ss_pred CCccEEEEEecCcCCCCeeCCHHHHHHHHHHHHhCceEEEEehhhHHHhh-hcccccHHHHhh----------hCCEEEE
Confidence 46899999999886 49999999999999999999999999999642211 111233444432 4557778
Q ss_pred cCccccCCCCceEEEEEecCHH-HHHHHHhccccC----CCChHHH--HHHHHHhCCchHHHHHHHHHHHHHHHHHHHHH
Q 044773 89 SLSKDLGLPGFRVGAIYSNDDT-VVAAATKMSSFG----LVSSQTQ--YLLSALLSDKKFAQNYISENKKRLKQRHRKLV 161 (289)
Q Consensus 89 s~sK~~g~~G~r~G~i~~~~~~-~~~~~~~~~~~~----~~~~~~q--~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~ 161 (289)
|++|.+|+++ |.+++-++. +.+........+ ....+.. ......+... +. ......+..++.+++.
T Consensus 192 ~~tK~~g~~~---Gavl~~~~~~i~~~~~~~k~~gg~~~~~G~~~a~~~~~~~~l~~l---~~-~~~~~~~~~~~A~~La 264 (290)
T PF01212_consen 192 GGTKNGGAPG---GAVLAGNKEFIAKARRQRKRLGGGMRQAGVLAAAELYQFAALRAL---EL-WLERARHANAMAKRLA 264 (290)
T ss_dssp ETTSTT-SSS---EEEEEESHHHHHHHHHHHHHHTHHHHHTTHHHHHHHHHHHHHCHE---EC-SHHHHHCHHHHHHCHH
T ss_pred EEEccccccc---ceEEEechHHHHHHHHHHHHhccCeeecceeeeechhhHHHHHHH---Hh-hHHHHHHHHHHHHHHH
Confidence 8999998776 666554555 333322222111 0111111 0000112111 11 1334455566678888
Q ss_pred HHHHhcCCceec
Q 044773 162 SGLEKAGISCLK 173 (289)
Q Consensus 162 ~~l~~~g~~~~~ 173 (289)
+.|+.++..+..
T Consensus 265 ~~l~~~~~~~~~ 276 (290)
T PF01212_consen 265 AGLEALGGVLPR 276 (290)
T ss_dssp HCHHEECEEEET
T ss_pred HHHHHCCCcccC
Confidence 888887654433
No 370
>COG0076 GadB Glutamate decarboxylase and related PLP-dependent proteins [Amino acid transport and metabolism]
Probab=98.31 E-value=3.6e-05 Score=71.50 Aligned_cols=172 Identities=13% Similarity=0.021 Sum_probs=106.4
Q ss_pred hHHHhhhCCCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCC
Q 044773 2 YQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVW 81 (289)
Q Consensus 2 l~~~~~~~~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 81 (289)
+++++..+.-..+|+-+-++-++|.+=+ +++|.++|.++++++.+|.||+++...-...... +.. ...
T Consensus 198 l~~~i~~~t~~g~vV~~aGtT~~G~iDd---i~~ia~ia~~~~i~lHVDAA~GG~~~pf~~~~~~--~~f-------~l~ 265 (460)
T COG0076 198 LEEAIDENTIGGVVVGTAGTTDTGSIDD---IEELADIAEEYGIWLHVDAAFGGFLLPFLEPDGR--WDF-------GLE 265 (460)
T ss_pred HHHHHHhhccCceEEEEecCCCCCccCC---HHHHHHHHHHcCCcEEEEccccceeecccCccch--hhc-------CCC
Confidence 4566655511113677777889998755 9999999999999999999999875421111111 111 122
Q ss_pred CceEEEecCccccCCCCceEEEEEecCH-HHHHHHHhccccCC----------CChHHHHHHHHHhCCchHHHHHHHHHH
Q 044773 82 NRVHIVYSLSKDLGLPGFRVGAIYSNDD-TVVAAATKMSSFGL----------VSSQTQYLLSALLSDKKFAQNYISENK 150 (289)
Q Consensus 82 ~~~i~i~s~sK~~g~~G~r~G~i~~~~~-~~~~~~~~~~~~~~----------~~~~~q~~~~~~l~~~~~~~~~~~~~~ 150 (289)
..+-+..+++|... .-..+||++.+++ .+.+.......++. ++..+-.++..+..-..+..+-.+++.
T Consensus 266 ~vdSIt~d~HK~g~-aP~~~G~il~rd~e~l~~~~~~~~~yl~~~~~~~~ti~~sr~~~~~~~~~~~l~~lG~eGy~~l~ 344 (460)
T COG0076 266 GVDSITVDGHKYGL-APIGCGVVLFRDEEALRRILIFADYYLPGGGIPNFTILGSRPGRQALALYANLRRLGREGYRKLL 344 (460)
T ss_pred CceEEEECcccccC-CCCCceEEEEECHHHhhhhhhcccccCCCCCcCceeEeeccchHHHHHHHHHHHHhCHhHHHHHH
Confidence 44456789999775 6678999999887 45554442222211 122222222222221111134467777
Q ss_pred HHHHHHHHHHHHHHHhcC-CceecCCceEEEEEecCc
Q 044773 151 KRLKQRHRKLVSGLEKAG-ISCLKSNAGLFCWVDMRH 186 (289)
Q Consensus 151 ~~~~~~~~~l~~~l~~~g-~~~~~~~~g~~~~i~~~~ 186 (289)
++.-+..+++.+.+++.| +++..+.....+.++.++
T Consensus 345 ~~~~~~a~~la~~l~~~~~~e~~~~p~l~~V~fr~~~ 381 (460)
T COG0076 345 DRTLELARYLAEELEKLGDFELVNEPELPIVAFRLKD 381 (460)
T ss_pred HHHHHHHHHHHHHHHhCCCcEeecCCccceEEEEcCC
Confidence 888889999999999985 887764444566677754
No 371
>PRK12462 phosphoserine aminotransferase; Provisional
Probab=98.27 E-value=8.4e-05 Score=66.82 Aligned_cols=203 Identities=12% Similarity=0.063 Sum_probs=121.0
Q ss_pred hhCCCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEE
Q 044773 7 KRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHI 86 (289)
Q Consensus 7 ~~~~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~ 86 (289)
...++.+.|.+|+-.-.||..++ ++.+.+++++|+|.+-+- .+.+ ..+. +..++
T Consensus 139 ~~~~d~~~v~~t~NETstGv~~~--------~~~~~~~~llvvD~sS~~---~s~p-id~~--------------~~dvi 192 (364)
T PRK12462 139 DWDARAPFRHYVSNETVEGLQFP--------DAAGLPDSPLIADMSSDF---MSRP-FDVE--------------AYGMV 192 (364)
T ss_pred ccCCCCcEEEEccCCCCceEecC--------cccccCCCeEEEEcCchh---hCCC-CChH--------------HccEE
Confidence 34456777777755557799886 222236899999999873 2333 3332 22578
Q ss_pred EecCccccCCCCceEEEEEecCHHHHHHHH-------------hccccCCCChHHHHHHHHHhCCchHHHH--HHHHHHH
Q 044773 87 VYSLSKDLGLPGFRVGAIYSNDDTVVAAAT-------------KMSSFGLVSSQTQYLLSALLSDKKFAQN--YISENKK 151 (289)
Q Consensus 87 i~s~sK~~g~~G~r~G~i~~~~~~~~~~~~-------------~~~~~~~~~~~~q~~~~~~l~~~~~~~~--~~~~~~~ 151 (289)
..+.=|.+|.+| ++.++.+++.+..... ....+.+++....+++...++-.. ++ =++.+.+
T Consensus 193 ~agsQKnlgP~G--ltvvivs~~al~~~~~~~p~~ldy~~~~~~~s~~nTPpv~~iy~l~~~l~~i~--~e~GGl~~~~~ 268 (364)
T PRK12462 193 YAHAQKNLGPAG--VTVAIIRRALLERVPDTLPPMLDFRTHVEHRSNYNTPPVFAIYVMALVLRWIR--DEIGGVHAMRD 268 (364)
T ss_pred EeeccccCCCCc--eEEEEECHHHHhhccccCCchhhHHHHHhcCCCCCCchHHHHHHHHHHHHHHH--HhccCHHHHHH
Confidence 888999999777 6677775554432111 112233334444444444433211 11 2567778
Q ss_pred HHHHHHHHHHHHHHhcC-CceecC----CceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEE
Q 044773 152 RLKQRHRKLVSGLEKAG-ISCLKS----NAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFR 226 (289)
Q Consensus 152 ~~~~~~~~l~~~l~~~g-~~~~~~----~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~R 226 (289)
+.+++.+.+++.+.+.. +..... -+-+-+.+++.+.. .+.++... +++.|+.-..|..- -+.+|
T Consensus 269 r~~~ka~~ly~~id~~~~~~~~~~~~~~RS~mnv~f~~~~~~------l~~~f~~~-a~~~gl~~lkGhr~----vgg~R 337 (364)
T PRK12462 269 INARKAAMLYATLDALNEVIDCHAHRAARSTMNVAFRFRQPR------LDTLFKEQ-STEAGFCGLSGHRS----IGGIR 337 (364)
T ss_pred HHHHHHHHHHHHHHhCCCcccCCCChhhcCcceEEEEcCCHH------HHHHHHHH-HHHCCCccccCCcc----cCceE
Confidence 88888899999998873 432211 12234445544321 12345554 45779987655432 35699
Q ss_pred EEEec-CCHHHHHHHHHHHHHHHHH
Q 044773 227 VCFAN-MSEDTLKLSMQRLKAFVDS 250 (289)
Q Consensus 227 is~~~-~~~e~l~~~l~~l~~~l~~ 250 (289)
+|+-+ .+.|.++.+++-++++-++
T Consensus 338 as~yna~~~e~v~~L~~fm~~f~~~ 362 (364)
T PRK12462 338 ASLYNAVSEQAVSRLCAFLKDFAIR 362 (364)
T ss_pred EEcCCCCCHHHHHHHHHHHHHHHHh
Confidence 99944 7899999988888887654
No 372
>KOG1405 consensus 4-aminobutyrate aminotransferase [Amino acid transport and metabolism]
Probab=98.27 E-value=5.6e-05 Score=66.03 Aligned_cols=211 Identities=13% Similarity=0.107 Sum_probs=115.9
Q ss_pred hHHHhhhCC---CccEEEEeCC-CCCCc-cCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCc-cChhhhhhcccc
Q 044773 2 YQLAQKRHL---KVKGVLVTNP-SNPLG-TTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGF-VSIMEILKDRNC 75 (289)
Q Consensus 2 l~~~~~~~~---~~~~i~l~~p-~NPtG-~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~-~~~~~~~~~~~~ 75 (289)
+|+++.++. .+-+.++..| +.-.| .--|++....|.+++++|++.+|+||++.+.+-+|.-- ..-+.+
T Consensus 258 Ve~li~~~~~k~~pVaaiIvEPIQsEGGDnhaSp~Ff~kLrdi~~Kh~v~fivDEVQTGgGaTGk~WaHehw~l------ 331 (484)
T KOG1405|consen 258 VEDLIVKYRKKKKPVAAIIVEPIQSEGGDNHASPDFFRKLRDITKKHGVAFIVDEVQTGGGATGKFWAHEHWNL------ 331 (484)
T ss_pred HHHHHHHHhhcCCCeEEEEeechhccCCCccCCHHHHHHHHHHHHhcCeEEEeeeeecCCCccCceeeehhcCC------
Confidence 345554443 2334466667 54444 34588899999999999999999999999876554321 111112
Q ss_pred ccCCCCCceEEEecCccccCCCCceEEEEEecCHHHHH-HHHhccccCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHH
Q 044773 76 ENTEVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDTVVA-AATKMSSFGLVSSQTQYLLSALLSDKKFAQNYISENKKRLK 154 (289)
Q Consensus 76 ~~~d~~~~~i~i~s~sK~~g~~G~r~G~i~~~~~~~~~-~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~ 154 (289)
+.-.-+.+|||-|- .| ||..- ++..-+ ..+.++++. ..+.-...+..+++.... +.+....+
T Consensus 332 ------~~PpD~vTFSKK~q-~g---Gffh~-~~frpn~pYrifNTWm-GdP~k~lll~~vv~~I~~-----~~Ll~n~~ 394 (484)
T KOG1405|consen 332 ------DSPPDVVTFSKKFQ-TG---GFFHD-EEFRPNEPYRIFNTWM-GDPSKNLLLEEVVQEIKR-----EDLLNNVA 394 (484)
T ss_pred ------CCCccceehhhhhh-cC---ccccC-cccCCCchHHHhhhhc-CChHHHHHHHHHHHHHhH-----HHHHHHHH
Confidence 11134678999995 66 66554 222222 233334333 333333333333332221 22233334
Q ss_pred HHHHHHHHHHHhc----C--CceecCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEE
Q 044773 155 QRHRKLVSGLEKA----G--ISCLKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVC 228 (289)
Q Consensus 155 ~~~~~l~~~l~~~----g--~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ris 228 (289)
..-+.|...|.++ + +.-....|. |+.++++....- ++++..+ +-.|+.+-.+ | ...+|+.
T Consensus 395 ~vG~~l~~gL~~Lq~~~p~~~~~~RGrGT-F~a~d~ps~~~R------dk~i~~~-~~nGv~~GGC---g---~~siRfR 460 (484)
T KOG1405|consen 395 HVGKALLKGLLELQAKYPGKINNLRGRGT-FIAWDCPSGSIR------DKLILIA-RLNGVNLGGC---G---DKSIRFR 460 (484)
T ss_pred HHHHHHHHHHHHHHHhCchhhhcccccce-EEEEeCCChHHH------HHHHHHH-HHcCceeccc---c---cceeeec
Confidence 4444455555443 1 333334554 555677764322 3455544 4667775532 2 3456776
Q ss_pred Eec-CCHHHHHHHHHHHHHHHH
Q 044773 229 FAN-MSEDTLKLSMQRLKAFVD 249 (289)
Q Consensus 229 ~~~-~~~e~l~~~l~~l~~~l~ 249 (289)
++. -++...+..++++.+.+.
T Consensus 461 PsLvf~~~Ha~i~l~~~~k~l~ 482 (484)
T KOG1405|consen 461 PSLVFRKHHADIFLDIFDKILA 482 (484)
T ss_pred cceeehhhhHHHHHHHHHHHhc
Confidence 653 377888999988887764
No 373
>PF01041 DegT_DnrJ_EryC1: DegT/DnrJ/EryC1/StrS aminotransferase family; InterPro: IPR000653 This entry represents a family that are probably all pyridoxal-phosphate-dependent aminotransferase enzymes with a variety of molecular functions. The family includes StsA P72454 from SWISSPROT, StsC P77952 from SWISSPROT and StsS []. The aminotransferase activity was demonstrated for purified StsC protein as the L-glutamine:scyllo-inosose aminotransferase 2.6.1.50 from EC, which catalyses the first amino transfer in the biosynthesis of the streptidine subunit of streptomycin [].; PDB: 2FNI_A 2FNU_A 2FN6_A 2PO3_A 3UWC_A 1O61_B 1O62_B 1O69_B 1B9I_A 1B9H_A ....
Probab=98.23 E-value=2.4e-05 Score=70.87 Aligned_cols=91 Identities=21% Similarity=0.249 Sum_probs=56.3
Q ss_pred hHHHhhhCCCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCcc-CCCCccChhhhhhccccccCCC
Q 044773 2 YQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVF-SSPGFVSIMEILKDRNCENTEV 80 (289)
Q Consensus 2 l~~~~~~~~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~-~~~~~~~~~~~~~~~~~~~~d~ 80 (289)
+++++. +++|+|++++. -|...+ +++|.++|+++|++||+|.+++.... .|....+
T Consensus 106 ~~~~i~--~~t~ai~~~h~---~G~~~d---~~~i~~~~~~~~i~lIeD~a~a~g~~~~g~~~G~--------------- 162 (363)
T PF01041_consen 106 LEKAIT--PKTKAILVVHL---FGNPAD---MDAIRAIARKHGIPLIEDAAQAFGARYKGRPVGS--------------- 162 (363)
T ss_dssp HHHHHH--TTEEEEEEE-G---GGB------HHHHHHHHHHTT-EEEEE-TTTTT-EETTEETTS---------------
T ss_pred HHHHhc--cCccEEEEecC---CCCccc---HHHHHHHHHHcCCcEEEccccccCceeCCEeccC---------------
Confidence 345544 56899988876 355454 99999999999999999999985322 1211111
Q ss_pred CCceEEEecC--ccccCC-CCceEEEEEecCHHHHHHHHhcc
Q 044773 81 WNRVHIVYSL--SKDLGL-PGFRVGAIYSNDDTVVAAATKMS 119 (289)
Q Consensus 81 ~~~~i~i~s~--sK~~g~-~G~r~G~i~~~~~~~~~~~~~~~ 119 (289)
..++.+.|| +|.+.. -| |+++++++.+.+.++.+.
T Consensus 163 -~gd~~~fSf~~~K~i~~geG---G~v~~~~~~~~~~~~~~~ 200 (363)
T PF01041_consen 163 -FGDIAIFSFHPTKIITTGEG---GAVVTNDPELAERARALR 200 (363)
T ss_dssp -SSSEEEEESSTTSSS-SSS----EEEEESTHHHHHHHHHHT
T ss_pred -CCCceEecCCCCCCCcCCCC---eeEEecHHHHHHHhhhhh
Confidence 123556665 698852 35 999998888877766543
No 374
>PF05889 SLA_LP_auto_ag: Soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen); InterPro: IPR008829 This family consists of several eukaryotic and archaeal proteins which are related to the Homo sapiens soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen). Autoantibodies are a hallmark of autoimmune hepatitis, but most are not disease specific. Autoantibodies to soluble liver antigen (SLA) and to liver and pancreas antigen (LP) have been described as disease specific, occurring in about 30% of all patients with autoimmune hepatitis []. The function of SLA/LP is unknown, however, it has been suggested that the protein may function as a serine hydroxymethyltransferase and may be an important enzyme in the thus far poorly understood selenocysteine pathway []. The archaeal sequences Q8TXK0 from SWISSPROT and Q8TYR3 from SWISSPROT are annotated as being pyridoxal phosphate-dependent enzymes.; GO: 0016740 transferase activity; PDB: 2E7J_B 2E7I_B 2Z67_C 3HL2_D 3BC8_A 3BCA_A 3BCB_A.
Probab=98.00 E-value=0.00086 Score=60.09 Aligned_cols=229 Identities=14% Similarity=0.140 Sum_probs=116.3
Q ss_pred HHHhhh-CCCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhc-cccccCCC
Q 044773 3 QLAQKR-HLKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKD-RNCENTEV 80 (289)
Q Consensus 3 ~~~~~~-~~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~-~~~~~~d~ 80 (289)
|+.++. .++..+.++++++--.|... +++++|+++|++||+..|+..||+- -.. .....++. . -.
T Consensus 145 e~~i~~~G~~~iLcvltttscfapr~~--D~i~~IakiC~~~~IPhlvNnAYgv---Q~~---~~~~~i~~a~-----~~ 211 (389)
T PF05889_consen 145 EAKIEELGADNILCVLTTTSCFAPRLP--DDIEEIAKICKEYDIPHLVNNAYGV---QSS---KCMHLIQQAW-----RV 211 (389)
T ss_dssp HHHHHHHCGGGEEEEEEESSTTTTB------HHHHHHHHHHHT--EEEEGTTTT---T-H---HHHHHHHHHH-----HH
T ss_pred HHHHHHhCCCCeEEEEEecCccCCCCC--ccHHHHHHHHHHcCCceEEccchhh---hHH---HHHHHHHHHH-----hc
Confidence 444433 23456668888754445543 3699999999999999999999972 111 11111111 0 01
Q ss_pred CCceEEEecCccccCCCCceEEEEEecCHHHHHHH-HhccccCCCChHHHHHHHHHhC--CchHHHHHHHHHHHHHHHHH
Q 044773 81 WNRVHIVYSLSKDLGLPGFRVGAIYSNDDTVVAAA-TKMSSFGLVSSQTQYLLSALLS--DKKFAQNYISENKKRLKQRH 157 (289)
Q Consensus 81 ~~~~i~i~s~sK~~g~~G~r~G~i~~~~~~~~~~~-~~~~~~~~~~~~~q~~~~~~l~--~~~~~~~~~~~~~~~~~~~~ 157 (289)
....+++.|+.|-|= -+..-+.|.++++.....+ +.+.+-. ..++.......++. ...| ...+.++.+.+....
T Consensus 212 GRvda~vqS~dkNF~-VPvGgai~As~~~~~i~~vs~~YpGRa-s~sp~ld~~itLl~LG~~g~-~~ll~~r~~~f~~l~ 288 (389)
T PF05889_consen 212 GRVDAFVQSTDKNFM-VPVGGAIMASFDPSGILAVSKEYPGRA-SASPSLDLFITLLSLGCTGY-GALLKERKASFPYLK 288 (389)
T ss_dssp STCSEEEEEHHHHHC-EESSHEEEEESSHHHHHHHHHTSHSHB-TSHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
T ss_pred CCcceeeeecCCCEE-ecCCCcEEEecCHHHHHHHHHHhhhhh-hcccchHHHHHHHHHhhhHH-HHHHHHHHHHHHHHH
Confidence 234578899999982 2222256666666555544 4444443 22233333333333 3333 444555555555555
Q ss_pred HHHHHHHHhcCCceec-CCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeE----EeCCCCCC-----CCCCCeEEE
Q 044773 158 RKLVSGLEKAGISCLK-SNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLN----ISPGSSCH-----CTEPGWFRV 227 (289)
Q Consensus 158 ~~l~~~l~~~g~~~~~-~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~----v~pg~~f~-----~~~~~~~Ri 227 (289)
+++.+.-++.+-.+.. |.....+.+.++....... .+...+...| ...||. +.|+..+. ..+-.|+-+
T Consensus 289 erl~~~aee~~e~ll~~p~N~is~a~tl~~l~~~~~-k~~~~lgs~L-f~R~VsG~RvV~~~~~~~tsh~~~yp~~Ylt~ 366 (389)
T PF05889_consen 289 ERLKKWAEEVGERLLETPRNHISMAFTLDTLYEISQ-KDGTFLGSML-FKRGVSGIRVVTPGGKKQTSHSSNYPCPYLTA 366 (389)
T ss_dssp HHHHHHHHHTTEEBSSSTT-SSEEEEE-TTCCTCCS-SHHHHHHHHH-HHTTEESSEEEETSSCEEETTSS--SSSEEEE
T ss_pred HHHHHHHHHhhhhhcCCCCCCeeEEEECccchhhcc-chhhhHHHHH-HhCCcccceeeccCCCcccccCCCCchHHHHH
Confidence 5555555554433322 3333334445543322111 2333455555 466775 33332221 123478888
Q ss_pred EEec-CCHHHHHHHHHHHHHHHH
Q 044773 228 CFAN-MSEDTLKLSMQRLKAFVD 249 (289)
Q Consensus 228 s~~~-~~~e~l~~~l~~l~~~l~ 249 (289)
+.+. ++.||++..+++|.++++
T Consensus 367 AsaiG~~~eevd~~v~rL~k~i~ 389 (389)
T PF05889_consen 367 ASAIGMTREEVDYFVKRLDKIIK 389 (389)
T ss_dssp EE-TT--HHHHHHHHHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHhC
Confidence 6643 799999999999999875
No 375
>PF02347 GDC-P: Glycine cleavage system P-protein; InterPro: IPR020580 This family consists of glycine cleavage system P-proteins (1.4.4.2 from EC) from bacterial, mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex (2.1.2.10 from EC (GDC) also annotated as glycine cleavage system or glycine synthase. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor, carbon dioxide is released and the remaining methylamin moiety is then transferred to the lipoamide cofactor of the H protein. GDC consists of four proteins P, H, L and T []. The reaction catalysed by this protein is: Glycine + lipoylprotein = S-aminomethyldihydrolipoylprotein + CO2 ; GO: 0004375 glycine dehydrogenase (decarboxylating) activity, 0055114 oxidation-reduction process; PDB: 1WYV_A 1WYT_C 1WYU_A.
Probab=97.84 E-value=0.00064 Score=62.14 Aligned_cols=197 Identities=16% Similarity=0.192 Sum_probs=97.8
Q ss_pred CCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEec
Q 044773 10 LKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVYS 89 (289)
Q Consensus 10 ~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~s 89 (289)
.++-+|++.+||. .|.+-+ +++|.++++++|+++|+ -+.- ..+.+-..+ . ..+-+|++++
T Consensus 196 ~~~a~v~vq~Pn~-~G~~ed---~~~i~~~~h~~gal~~~-~ad~-~aL~~l~~P--g------------e~GADI~vg~ 255 (429)
T PF02347_consen 196 DDTAAVMVQNPNT-FGVFED---IKEIADIAHAAGALVIV-GADP-NALGGLKSP--G------------EYGADIVVGE 255 (429)
T ss_dssp TTEEEEEEESS-T-TSB--T---HHHHHHHHHHTT-EEEE-CGGC-CGCCTC--G--G------------GGT-SEEEEC
T ss_pred cCeEEEEeecCCC-CceEee---HHHHHHHHHHcCCEEEE-ecCH-HHHhCcCCh--h------------hcCccEEeeC
Confidence 5788999999975 588755 99999999999999887 3332 333332222 2 2244566775
Q ss_pred CccccC----CCCceEEEEEecCHHHHHH---------------------------HHhc--cccCCCChHHHHHHHHHh
Q 044773 90 LSKDLG----LPGFRVGAIYSNDDTVVAA---------------------------ATKM--SSFGLVSSQTQYLLSALL 136 (289)
Q Consensus 90 ~sK~~g----~~G~r~G~i~~~~~~~~~~---------------------------~~~~--~~~~~~~~~~q~~~~~~l 136 (289)
+|.|| .+|=-+|++.++++.+... +++- .+.. ++.....++.+++
T Consensus 256 -~Q~fg~p~~~GGP~~G~~a~~~~l~r~lPGRiVG~t~D~~G~~~~~ltLqtREQHIrReKAtSNI-ctnqaL~A~~a~~ 333 (429)
T PF02347_consen 256 -HQTFGIPMGFGGPGAGFFAVREDLVRQLPGRIVGQTKDADGKRAFVLTLQTREQHIRREKATSNI-CTNQALLALAAAI 333 (429)
T ss_dssp -CTTTT---CCC-S--EEEEE-GGGGGGS-S-EEEEEEBCCCSCCEEEE-GGGTCHHHGCCSTT----SS-HHHHHHHHH
T ss_pred -CCCCcccCCCCCCCeeeEEEhhhhhhhCCCceecccccccccceeeeccccccccccccchhhhh-hhhHHHHHHHHHH
Confidence 77775 3456789998865533221 1111 1222 3332332222222
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCceecCCceEE--EEEecCccccCCChhhHHHHHHHHHHhcCeEEeC
Q 044773 137 SDKKFAQNYISENKKRLKQRHRKLVSGLEKA-GISCLKSNAGLF--CWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISP 213 (289)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~~~~~~~g~~--~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~p 213 (289)
--.....+=+++..+....+..++.+.|.+. +..+..+ -|+ +...... ....++.+... ..|+..
T Consensus 334 Yl~~~G~~GL~~iA~~~~~~A~yl~~~L~~~~~~~~~~~--~f~e~v~~~~~~-------~~~~~l~~~~~-~~gl~~-- 401 (429)
T PF02347_consen 334 YLAYLGPEGLREIAERIHLNAHYLAERLKKIYGLPFDNP--FFFEFVVVFSKD-------KEVEELLKRGI-EGGLNL-- 401 (429)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCTTBECSSSS--SBSSEEEEESS--------HHHHHHHHTT-----EEE--
T ss_pred HHHHhCHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCCC--CceeeeeecCCc-------HHHHHHHHHHH-hcCCCc--
Confidence 1111115558889999999999999999986 3333222 232 2222221 11122333333 234322
Q ss_pred CCCCCCCCCCeEEEEEec-CCHHHHHHHHHHH
Q 044773 214 GSSCHCTEPGWFRVCFAN-MSEDTLKLSMQRL 244 (289)
Q Consensus 214 g~~f~~~~~~~~Ris~~~-~~~e~l~~~l~~l 244 (289)
.....+.+-+++.- .+.++++.+++.+
T Consensus 402 ----~~~~~~~~li~~TE~~t~edid~lv~~f 429 (429)
T PF02347_consen 402 ----RYPDDGALLICVTETRTKEDIDRLVEAF 429 (429)
T ss_dssp ----GGG-SSEEEEE--TT--HHHHHHHHH--
T ss_pred ----cccCCCeEEEEccCCCCHHHHHHHHhcC
Confidence 22334578888854 5889999988754
No 376
>PF00282 Pyridoxal_deC: Pyridoxal-dependent decarboxylase conserved domain; InterPro: IPR002129 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent decarboxylases share regions of sequence similarity, particularly in the vicinity of a conserved lysine residue, which provides the attachment site for the pyridoxal-phosphate (PLP) group [, ]. Among these enzymes are aromatic-L-amino-acid decarboxylase (L-dopa decarboxylase or tryptophan decarboxylase), which catalyses the decarboxylation of tryptophan to tryptamine []; tyrosine decarboxylase, which converts tyrosine into tyramine; and histidine decarboxylase, which catalyses the decarboxylation of histidine to histamine []. These enzymes belong to the group II decarboxylases [, ].; GO: 0016831 carboxy-lyase activity, 0030170 pyridoxal phosphate binding, 0019752 carboxylic acid metabolic process; PDB: 3MC6_A 1XEY_A 1ES0_B 2OKK_A 2JIS_B 2QMA_A 3MAF_B 3MAD_B 3MAU_A 3MBB_A ....
Probab=97.72 E-value=0.001 Score=60.42 Aligned_cols=152 Identities=19% Similarity=0.233 Sum_probs=88.6
Q ss_pred EEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEecCccc
Q 044773 14 GVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVYSLSKD 93 (289)
Q Consensus 14 ~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~s~sK~ 93 (289)
+|+.+-.+-.+|.+ +++++|.++|+++++++.+|.+|.+..+-.+.......- ...-+-+..+++|.
T Consensus 197 ~vvat~Gtt~~Ga~---D~l~~i~~i~~~~~~wlHVDaA~gg~~~~~~~~~~~~~g----------i~~adSit~d~HK~ 263 (373)
T PF00282_consen 197 AVVATAGTTNTGAI---DPLEEIADICEKYNIWLHVDAAYGGSALLSPEYRHLLFG----------IERADSITIDPHKW 263 (373)
T ss_dssp EEEEEBS-TTTSBB----SHHHHHHHHHHCT-EEEEEETTGGGGGGHCTTGGGGTT----------GGGESEEEEETTTT
T ss_pred eeeccCCCcccccc---cCHHHHhhhccccceeeeecccccccccccccccccccc----------cccccccccchhhh
Confidence 44455556778887 459999999999999999999999743322222221111 22334567789999
Q ss_pred cCCCCceEEEEEecCHHHHH-HHHhcccc------------------CCCChHHHHHHHHHhCCchHHHHHHHHHHHHHH
Q 044773 94 LGLPGFRVGAIYSNDDTVVA-AATKMSSF------------------GLVSSQTQYLLSALLSDKKFAQNYISENKKRLK 154 (289)
Q Consensus 94 ~g~~G~r~G~i~~~~~~~~~-~~~~~~~~------------------~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~ 154 (289)
++ ....+|+++.+++.... .......| ..++. ...++..++.-..+..+-+++..+..-
T Consensus 264 l~-~P~~~~~~l~r~~~~l~~~~~~~~~Yl~~~~~~~~~~~~~~~~tl~~SR-~~~alk~w~~l~~~G~~G~~~~i~~~~ 341 (373)
T PF00282_consen 264 LG-VPYGCGVLLVRDKSDLRDAFSINADYLGNDDRESDESYDYGDYTLQGSR-RFRALKLWATLKSLGREGYRERIRRCI 341 (373)
T ss_dssp TS--SSS-EEEEESSGGGHHGGGEEEETCTT-S-SSS-GGGCEEEGSSSSSG-HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hc-CCccceeEEeecccchHHHhccChhhhcccccccccccccccccccccc-cchHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 98 55789999998765432 22111111 11333 333333333222222444677777788
Q ss_pred HHHHHHHHHHHhc-CCceec-CCceEEE
Q 044773 155 QRHRKLVSGLEKA-GISCLK-SNAGLFC 180 (289)
Q Consensus 155 ~~~~~l~~~l~~~-g~~~~~-~~~g~~~ 180 (289)
+..+++.+.+++. ++++.. ++-+..+
T Consensus 342 ~~a~~l~~~l~~~~~~el~~~~~~~~vc 369 (373)
T PF00282_consen 342 ELARYLADRLRKDPRFELVNEPDLNIVC 369 (373)
T ss_dssp HHHHHHHHHHHTSTTEEESSTTSSSEEE
T ss_pred HHHHHHHHHHHhCCCEEEEcCCCceEEE
Confidence 8889999999987 577654 4444333
No 377
>TIGR00461 gcvP glycine dehydrogenase (decarboxylating). This apparently ubiquitous enzyme is found in bacterial, mammalian and plant sources. The enzyme catalyzes the reaction: GLYCINE + LIPOYLPROTEIN = S-AMINOMETHYL-DIHYDROLIPOYLPROTEIN + CO2. It is part of the glycine decarboxylase multienzyme complex (GDC) consisting of four proteins P, H, L and T. Active site in E.coli is located as the (K) residues at position 713 of the SEED alignment.
Probab=97.71 E-value=0.0023 Score=64.01 Aligned_cols=195 Identities=11% Similarity=0.114 Sum_probs=114.1
Q ss_pred CccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEecC
Q 044773 11 KVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVYSL 90 (289)
Q Consensus 11 ~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~s~ 90 (289)
++-++++.+|+. .|.+.+ +++|.+++++.|++++++--... +.... +.. ..+-+|+++ .
T Consensus 194 ~~~~v~~q~Pn~-~G~ied---~~~i~~~~h~~gal~~~~ad~~a--l~ll~--~Pg------------e~GaDi~vg-~ 252 (939)
T TIGR00461 194 DVFGCLLQYPAT-DGSILD---YKQLIDALHSHKSLVSVAADLMA--LTLLT--PPG------------HYGADIVLG-S 252 (939)
T ss_pred CEEEEEEECCCC-CeEEec---HHHHHHHHHHcCCEEEEEechHH--hCCcC--CHH------------HcCCcEEee-C
Confidence 566778888854 688864 99999999999999998443322 22222 212 224445554 3
Q ss_pred ccccCC----CCceEEEEEecCHHHHHHHH----------------------------hccccCC-CChHHHHHHH-HH-
Q 044773 91 SKDLGL----PGFRVGAIYSNDDTVVAAAT----------------------------KMSSFGL-VSSQTQYLLS-AL- 135 (289)
Q Consensus 91 sK~~g~----~G~r~G~i~~~~~~~~~~~~----------------------------~~~~~~~-~~~~~q~~~~-~~- 135 (289)
+|.||. .|--.|++.++++. .+.+. +-..+++ ++.....++. .+
T Consensus 253 ~q~fg~p~g~GGP~aG~~a~~~~l-~r~lPgrivG~s~D~~G~~~~~l~LqtReqhIrRekAtSNICt~qaL~a~~a~~Y 331 (939)
T TIGR00461 253 SQRFGVPMGYGGPHAAFFAVKDEY-NRKMPGRIVGVSKDALGNTALRLALQTREQHIRRDKATSNICTAQVLLANVASSY 331 (939)
T ss_pred CCccCCCCCCCCCceeeeeecHhh-HhhCCCCceeEEecCCCCccceeecccccccccccccCcchhHHHHHHHHHHHHH
Confidence 454543 34458888885443 32210 0001111 1111111211 21
Q ss_pred hCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceecCCceEE--EEEecCccccCCChhhHHHHHHHHHHhcCeEEeC
Q 044773 136 LSDKKFAQNYISENKKRLKQRHRKLVSGLEKAGISCLKSNAGLF--CWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISP 213 (289)
Q Consensus 136 l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~g~~--~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~p 213 (289)
+... ..+-+++..++...+..++.+.|.+.|+++..+ .+| +.++++. . +..++.+.++ +.||.+..
T Consensus 332 ~~~~--G~~GL~~iA~~~~~~a~~l~~~L~~~G~~~~~~--~fF~~~~v~~~~-~------~~~~i~~~~~-~~gi~l~~ 399 (939)
T TIGR00461 332 CVYH--GPKGLKNIARRIHSLTSILANGLENDPHELINK--TWFDTLTVKVGN-G------ISSELLKAAE-EFNINLRA 399 (939)
T ss_pred HHHH--CHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCC--CccceEEEEeCC-C------CHHHHHHHHH-HCCCeeee
Confidence 1111 033367778888888899999999989887655 334 2234421 0 1235667766 66999765
Q ss_pred CCCCCCCCCCeEEEEEec-CCHHHHHHHHHHHH
Q 044773 214 GSSCHCTEPGWFRVCFAN-MSEDTLKLSMQRLK 245 (289)
Q Consensus 214 g~~f~~~~~~~~Ris~~~-~~~e~l~~~l~~l~ 245 (289)
. ..+.+++|+.. ++.++++.+++.+.
T Consensus 400 ~------~~~~i~~s~~E~~t~~di~~l~~~~~ 426 (939)
T TIGR00461 400 V------DTTTVGIALDETTTKADVENLLKVFD 426 (939)
T ss_pred c------CCCEEEEEeecCCCHHHHHHHHHHhc
Confidence 2 23579999954 79999999999985
No 378
>KOG0628 consensus Aromatic-L-amino-acid/L-histidine decarboxylase [Amino acid transport and metabolism]
Probab=97.35 E-value=0.011 Score=53.74 Aligned_cols=230 Identities=12% Similarity=0.159 Sum_probs=111.8
Q ss_pred hHHHhhhCCC---ccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccC
Q 044773 2 YQLAQKRHLK---VKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENT 78 (289)
Q Consensus 2 l~~~~~~~~~---~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (289)
|++++.++.. +.++++-+. -|-.+...+++++|..+|+++++++.+|.+|++-.+-=+.+..+..-+.
T Consensus 222 L~~AIe~D~arGlIPf~v~at~--GTT~~ca~D~l~elg~Vc~~~glWLHVDAAYAGsa~iCpE~r~l~rGie------- 292 (511)
T KOG0628|consen 222 LRKAIEEDIARGLIPFFVCATL--GTTSSCAFDELEELGPVCREEGLWLHVDAAYAGSAFICPEFRYLMRGIE------- 292 (511)
T ss_pred HHHHHHHHHhCCCccEEEEEee--cCccccccccHHHhcchhhhcCEEEEeehhhccccccCHHHHHHhhcch-------
Confidence 4555555432 334344433 2344467789999999999999999999999976443222222111110
Q ss_pred CCCCceEEEecCccccCCCCceEEEEEe------------cCHHHHHHHHhc-ccc--CCCCh-HHHHHHHHHhCCchHH
Q 044773 79 EVWNRVHIVYSLSKDLGLPGFRVGAIYS------------NDDTVVAAATKM-SSF--GLVSS-QTQYLLSALLSDKKFA 142 (289)
Q Consensus 79 d~~~~~i~i~s~sK~~g~~G~r~G~i~~------------~~~~~~~~~~~~-~~~--~~~~~-~~q~~~~~~l~~~~~~ 142 (289)
.-+-+-...||.+- --+.+..+-. .+..+....... ..+ +..+. -.-..+..++.-..+.
T Consensus 293 ---~aDSfn~n~hK~~~-vnfDCs~lWvkd~~~~~~~~~vdp~yL~h~~~~~~~Dyrhwqipl~rRfRSLKlWfv~R~~G 368 (511)
T KOG0628|consen 293 ---YADSFNFNPHKWLL-VNFDCSPLWVKDGTKLSRAFNVDPLYLKHAYQGSAPDYRHWQIPLGRRFRSLKLWFVLRSYG 368 (511)
T ss_pred ---hhccccCChhheeE-EeeeeecceeecCceeeeeeecChHhhcchhhccCCCccccccccccchhhHHHHHHHHHHh
Confidence 00112223344331 1122222211 111222111111 111 11111 1111222222211121
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc-CCceecCC-ceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCC
Q 044773 143 QNYISENKKRLKQRHRKLVSGLEKA-GISCLKSN-AGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCT 220 (289)
Q Consensus 143 ~~~~~~~~~~~~~~~~~l~~~l~~~-g~~~~~~~-~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~ 220 (289)
-+.+++..++.-+..+.+-+.+.+- .+++..+. -|+.+ +++... + ....++..++-....|.+.|.+.-+
T Consensus 369 ve~lq~~iR~h~~La~~fe~lv~~d~~FE~~~~~~lgLvc-FRlk~~-N----~~ne~Ll~~in~~g~i~l~~~~l~g-- 440 (511)
T KOG0628|consen 369 VENLQNYIREHVRLAKEFETLVRADPRFEIVNKRILGLVC-FRLKGD-N----EINEALLNRLNSSGRIHLVPASLHG-- 440 (511)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCcceeecccccceeE-EeecCC-c----HHHHHHHHHHHhcCcEEEEEeeecc--
Confidence 2222222222333333333333222 45554333 34333 454432 1 1224578888888889999877543
Q ss_pred CCCeEEEEEec--CCHHHHHHHHHHHHHHHHHHHH
Q 044773 221 EPGWFRVCFAN--MSEDTLKLSMQRLKAFVDSITT 253 (289)
Q Consensus 221 ~~~~~Ris~~~--~~~e~l~~~l~~l~~~l~~~~~ 253 (289)
.-.+|++++. .+.++++.+++.|.+..++...
T Consensus 441 -k~vlRf~V~s~~t~~~di~~a~~~I~~~a~~l~~ 474 (511)
T KOG0628|consen 441 -KFVLRFAVCSPLTNESDIDEAWKIIFEAADELFE 474 (511)
T ss_pred -eEEEEEEecCCCCcHHHHHHHHHHHHHHHHHHHh
Confidence 4679999954 5889999999999888777443
No 379
>KOG1383 consensus Glutamate decarboxylase/sphingosine phosphate lyase [Amino acid transport and metabolism]
Probab=97.34 E-value=0.036 Score=50.54 Aligned_cols=217 Identities=14% Similarity=0.140 Sum_probs=118.8
Q ss_pred CCccEEEEeCCCCCCccCCCHHHHHHHHHHHHH-cCCEEEEecCCCCCccC-CCCccChhhhhhccccccCCCCCceEEE
Q 044773 10 LKVKGVLVTNPSNPLGTTMSRNELNLLVNFITE-KNIHLISDEIYSGTVFS-SPGFVSIMEILKDRNCENTEVWNRVHIV 87 (289)
Q Consensus 10 ~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~-~~~~li~Dea~~~~~~~-~~~~~~~~~~~~~~~~~~~d~~~~~i~i 87 (289)
.++..++.+-|+-|+|..= +.++|.+++.+ +++.+.+|.+-+++... +.....-+++ ......-+-
T Consensus 217 eNti~lv~~~~~~p~G~~e---~ve~l~~l~~e~w~ipiHvDa~~GgFi~p~~~~~~~~fdF---------r~p~V~Sis 284 (491)
T KOG1383|consen 217 ENTIMLVGSLPNFPTGEIE---DVEKLADLLLEIWDIPIHVDACLGGFINPAGYLNEEEFDF---------RVPGVTSIS 284 (491)
T ss_pred cceEEEEEEcCCCCccchh---hHHHHHHHHHHHhCCceeecccCccccccccccCcccccc---------CCCCceeEe
Confidence 4588989999999999864 58888888888 99999999999887543 2211111111 111222233
Q ss_pred ecCccccCCCCceEEEEEecCHHHHH-HHH-h--c-----cc-cCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHH
Q 044773 88 YSLSKDLGLPGFRVGAIYSNDDTVVA-AAT-K--M-----SS-FGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRH 157 (289)
Q Consensus 88 ~s~sK~~g~~G~r~G~i~~~~~~~~~-~~~-~--~-----~~-~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 157 (289)
.+-+| +|+.--.+||++-+++.+.. .+. . + .+ ....|..+-.+++.+..-..+..+-..+..+.+.+..
T Consensus 285 a~~HK-YGl~~~G~~~vl~r~k~~~~~q~~~~~~w~Gg~y~s~TlngSR~g~~va~~wa~~~~lG~eGY~~~~~~ive~~ 363 (491)
T KOG1383|consen 285 ADGHK-YGLAPAGSSWVLYRNKELLPHQLFFHTDWLGGIYASPTLNGSRPGSQVAAQWAALMSLGEEGYRENTQNIVETA 363 (491)
T ss_pred eccce-eeeeecCcEEEEEcccccccceEEEeccccCccccCcccccCCcccHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 45556 45444448898876655432 111 1 1 01 1112222222222222211111233456667788888
Q ss_pred HHHHHHHHhc-CCceecC-CceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEEec--CC
Q 044773 158 RKLVSGLEKA-GISCLKS-NAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFAN--MS 233 (289)
Q Consensus 158 ~~l~~~l~~~-g~~~~~~-~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ris~~~--~~ 233 (289)
+.+++.+++. ++.+... .-.+.+ .... . .+..++...| ++.|=.+. +..| +..+-|++.. ..
T Consensus 364 ~~l~egie~i~~i~i~gkp~vs~~~---~~s~--~---~~i~elsd~l-~~~GW~ln-alq~----P~a~Hi~vt~~~~~ 429 (491)
T KOG1383|consen 364 RKLREGIENIKGIKIVGKPLVSFIL---FGSN--D---VNIFELSDLL-RKKGWILN-ALQF----PAAIHICVTRVHAR 429 (491)
T ss_pred HHHHHhhhccccceecCCCcEEEEE---ccCC--c---cchhhhhHHH-HhcCcCcc-ccCC----CCceEEEEEeeecc
Confidence 8999999987 6666654 322222 1111 1 2334555555 46565544 3322 2245566533 24
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 044773 234 EDTLKLSMQRLKAFVDSITT 253 (289)
Q Consensus 234 ~e~l~~~l~~l~~~l~~~~~ 253 (289)
++--++++..+.+++++...
T Consensus 430 ~~~A~~~v~Di~~~~~el~~ 449 (491)
T KOG1383|consen 430 EDVADRFVADIRKVVEELKS 449 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 45467777778888777765
No 380
>COG1921 SelA Selenocysteine synthase [seryl-tRNASer selenium transferase] [Amino acid transport and metabolism]
Probab=97.26 E-value=0.0057 Score=54.97 Aligned_cols=118 Identities=24% Similarity=0.171 Sum_probs=74.1
Q ss_pred hHHHhhhCCCccEEEEeCCCCC-CccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCC
Q 044773 2 YQLAQKRHLKVKGVLVTNPSNP-LGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEV 80 (289)
Q Consensus 2 l~~~~~~~~~~~~i~l~~p~NP-tG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 80 (289)
++.++. +++++++-++-+|. --..++ +++++++|+++++.+|+|++-....- ..+.+..++.
T Consensus 149 ~~~AIn--e~ta~llkV~s~~~~f~~~l~---~~~l~~ia~~~~lpvivD~aSg~~v~---~e~~l~~~la--------- 211 (395)
T COG1921 149 YELAIN--ENTALLLKVHSSNYGFTGMLS---EEELVEIAHEKGLPVIVDLASGALVD---KEPDLREALA--------- 211 (395)
T ss_pred HHHHhc--cCCeeEEEEeecccccccccc---HHHHHHHHHHcCCCEEEecCCccccc---cccchhHHHh---------
Confidence 344555 45777655544442 112234 78899999999999999999875422 3344455543
Q ss_pred CCceEEEecCccccCCCCceEEEEEecCHHHHHHHHhccc-cCCCChHHHHHHHHHhCC
Q 044773 81 WNRVHIVYSLSKDLGLPGFRVGAIYSNDDTVVAAATKMSS-FGLVSSQTQYLLSALLSD 138 (289)
Q Consensus 81 ~~~~i~i~s~sK~~g~~G~r~G~i~~~~~~~~~~~~~~~~-~~~~~~~~q~~~~~~l~~ 138 (289)
.+-+++++|-.|.|| |-+-|.|+++++.+.+..++... -..+..+...++.++|+.
T Consensus 212 ~GaDLV~~SgdKllg--GPqaGii~GkKelI~~lq~~~l~Ralrv~K~tla~l~~aLe~ 268 (395)
T COG1921 212 LGADLVSFSGDKLLG--GPQAGIIVGKKELIEKLQSHPLKRALRVDKETLAALEAALEL 268 (395)
T ss_pred cCCCEEEEecchhcC--CCccceEechHHHHHHHHhhhhhhhhhcCcHhHHHHHHHHHH
Confidence 256688999999985 45589999965555333232222 223666666676666664
No 381
>PF03841 SelA: L-seryl-tRNA selenium transferase; InterPro: IPR018319 In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This family describes SelA. A close homologue of SelA is found in Helicobacter pylori, but all other required elements are missing and the protein is shorter at the N terminus than SelA from other species. The trusted cut-off is set above the score generated for Helicobacter pylori putative SelA.; PDB: 2AEV_A 2AEU_A.
Probab=97.18 E-value=0.00064 Score=60.42 Aligned_cols=152 Identities=21% Similarity=0.179 Sum_probs=47.8
Q ss_pred hHHHhhhCCCccEEEEeCCCCCCccCC-CHHHHHHHHHHHHHcCCEEEEecCCCCCc----cCCCCccChhhhhhccccc
Q 044773 2 YQLAQKRHLKVKGVLVTNPSNPLGTTM-SRNELNLLVNFITEKNIHLISDEIYSGTV----FSSPGFVSIMEILKDRNCE 76 (289)
Q Consensus 2 l~~~~~~~~~~~~i~l~~p~NPtG~~~-~~~~l~~l~~~~~~~~~~li~Dea~~~~~----~~~~~~~~~~~~~~~~~~~ 76 (289)
|++++. +++.+++..+++|..-.-+ ..-.++++++++++|++.+|+|-.-..+. ++-+..+++.+.+.
T Consensus 129 ye~AI~--e~Ta~ll~Vh~Sn~~i~GFt~~~~~~el~~la~~~~lp~i~DlgsG~l~dl~~~gl~~Ep~v~~~~~----- 201 (367)
T PF03841_consen 129 YEKAIT--ENTAALLKVHTSNFRIQGFTGEVSLEELAELAKEHGLPVIVDLGSGLLVDLSPYGLPDEPTVQEYLA----- 201 (367)
T ss_dssp ----------------------------------HHHHHHHHHT--EEEE-TTHHHHHHHTT----------CCC-----
T ss_pred cccccc--ccccccccccccccccccccccccHHHHHHHHhhcCCcEEEECCCCCCcCcccccCccccHHHHHhh-----
Confidence 455554 5789998999888642211 11158999999999999999998873221 11122355666643
Q ss_pred cCCCCCceEEEecCccccCCCCceEEEEEecCHHHHHHHHhc--cccCCCChHHHHHHHHHhCCch----H-----HHHH
Q 044773 77 NTEVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDTVVAAATKM--SSFGLVSSQTQYLLSALLSDKK----F-----AQNY 145 (289)
Q Consensus 77 ~~d~~~~~i~i~s~sK~~g~~G~r~G~i~~~~~~~~~~~~~~--~~~~~~~~~~q~~~~~~l~~~~----~-----~~~~ 145 (289)
.+-++++.|-.|.+|.|. .|.|+++. .+++.+++- ..-..+.-....++.+.|+... . ....
T Consensus 202 ----~GaDlV~fSGdKlLGGPQ--aGiI~Gkk-~lI~~lk~~pl~RalrvdK~tla~L~atL~~Y~~~~~~~~~ip~l~m 274 (367)
T PF03841_consen 202 ----AGADLVTFSGDKLLGGPQ--AGIIVGKK-ELIEKLKKHPLGRALRVDKLTLAALEATLRLYLDPDKAKEEIPTLRM 274 (367)
T ss_dssp ----CT-SEEEEETTSSSSS-S---EEEEEEH-HHHHHHHHHHHTTT-B--HHHHHHHHHHHHH----------------
T ss_pred ----cCCCEEEEECCCcCCCCC--eEEEEeCH-HHHHHHhhCCCcceEeeCHHHHHHHHHHHHHHHHhhccccccccccc
Confidence 366788999999997454 79999964 444444432 1122255555555555544210 0 0222
Q ss_pred HHHHHHHHHHHHHHHHHHHHhc
Q 044773 146 ISENKKRLKQRHRKLVSGLEKA 167 (289)
Q Consensus 146 ~~~~~~~~~~~~~~l~~~l~~~ 167 (289)
+.+..+.++++.+.+...|...
T Consensus 275 l~~~~~~L~~rA~~l~~~l~~~ 296 (367)
T PF03841_consen 275 LTQSLEELRARAERLAAQLKAA 296 (367)
T ss_dssp ----------------------
T ss_pred cccccccccccccccccccccc
Confidence 3444556666777777766654
No 382
>KOG3843 consensus Predicted serine hydroxymethyltransferase SLA/LP (autoimmune hepatitis marker in humans) [Translation, ribosomal structure and biogenesis]
Probab=97.15 E-value=0.0036 Score=52.97 Aligned_cols=215 Identities=19% Similarity=0.252 Sum_probs=107.8
Q ss_pred CCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEecCccccCCC-CceEEEEEe
Q 044773 28 MSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVYSLSKDLGLP-GFRVGAIYS 106 (289)
Q Consensus 28 ~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~s~sK~~g~~-G~r~G~i~~ 106 (289)
-+++++++|..+|..|++.-|+..+|. + ... ..+..+...- .-...+.++.|+-|.|-.| | |.+++
T Consensus 171 r~pd~leaiaaica~~diphivnnayg-l--qse--e~i~~iaa~~-----~~grida~vqsldknf~vpvg---gaiia 237 (432)
T KOG3843|consen 171 RSPDNLEAIAAICAAHDIPHIVNNAYG-L--QSE--ECIHKIAAAA-----ECGRIDAFVQSLDKNFMVPVG---GAIIA 237 (432)
T ss_pred CCCchHHHHHHHHHccCchhhhccccc-c--chH--HHHHHHHHHh-----hhccHHHHHHHhhhcceeecc---hhHhh
Confidence 366789999999999999999999997 2 111 1111111110 1123345688999998544 3 44443
Q ss_pred -cCHHH-HHHHHhccccCCCChHHHHHHHHHhC--CchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCce-ecCCceEEEE
Q 044773 107 -NDDTV-VAAATKMSSFGLVSSQTQYLLSALLS--DKKFAQNYISENKKRLKQRHRKLVSGLEKAGISC-LKSNAGLFCW 181 (289)
Q Consensus 107 -~~~~~-~~~~~~~~~~~~~~~~~q~~~~~~l~--~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~-~~~~~g~~~~ 181 (289)
=++.+ ....+.+.+.. .++++...+..+|. ...+ .+.+.+..+.+-..++.+.+.-+..|-.+ ..|+....+.
T Consensus 238 ~fk~n~iq~iak~ypgra-sa~ps~dllitll~~gqn~f-~e~~~eqkemf~~l~~ki~~~ae~~~e~l~~~p~n~is~a 315 (432)
T KOG3843|consen 238 AFKDNFIQEIAKMYPGRA-SASPSLDLLITLLSLGQNAF-KELFGEQKEMFLKLRNKIIKFAEAIGECLLETPENEISLA 315 (432)
T ss_pred HhHHHHHHHHHHhCCCcc-ccCccHHHHHHHHHhchhHH-HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCchhhhh
Confidence 12233 33334444433 23334444444443 4444 33344444444444444444444443211 2233322222
Q ss_pred EecCccccCCChhhHHHHHHHHHHhcCeE---EeCCCCC------------CC----CCCCeEEEEEec-CCHHHHHHHH
Q 044773 182 VDMRHLLSSNTFEAEMELWKKIVYDVKLN---ISPGSSC------------HC----TEPGWFRVCFAN-MSEDTLKLSM 241 (289)
Q Consensus 182 i~~~~~~~~~~~~~~~~~~~~ll~~~gi~---v~pg~~f------------~~----~~~~~~Ris~~~-~~~e~l~~~l 241 (289)
+.+...... ...+..+...++-..||. |+|.+.. +. ..-+|+-+.++- .+.++++++.
T Consensus 316 mtl~ti~~~--k~kavt~~gsilfak~isgarvv~~~q~kttieg~ef~~f~sht~e~~~~yln~a~aigm~~hdld~~~ 393 (432)
T KOG3843|consen 316 MTLKTIDEA--KDKAVTLFGSILFAKGISGARVVPLGQMKTTIEGCEFIGFGSHTNEQHCAYLNAACAIGMKDHDLDEFF 393 (432)
T ss_pred hhhccCChH--HhhHHHHHHHHHHhccccCceEeeccccceeeeceEEeccccccCcCchhHhhHHHhcCCcHhHHHHHH
Confidence 222221111 011122344444455663 4443322 11 112456666643 6889999999
Q ss_pred HHHHHHHHHHHHhhhccc
Q 044773 242 QRLKAFVDSITTTLHNQS 259 (289)
Q Consensus 242 ~~l~~~l~~~~~~~~~~~ 259 (289)
.||...+.+..+.+.-.+
T Consensus 394 ~rl~~~~a~~~ke~aked 411 (432)
T KOG3843|consen 394 NRLDRCLAAFRKELAKED 411 (432)
T ss_pred HHHHHHHHHHHHHHhhcc
Confidence 999888888776554333
No 383
>PF06838 Met_gamma_lyase: Methionine gamma-lyase ; InterPro: IPR009651 This family represents the aluminium resistance protein, which confers resistance to aluminium in bacteria [].; PDB: 3JZL_A 3I16_C 3GWP_A 3FD0_B 3HT4_F.
Probab=97.04 E-value=0.0063 Score=53.96 Aligned_cols=99 Identities=22% Similarity=0.256 Sum_probs=63.0
Q ss_pred hHHHhhhCCCccEEEEeCC-CCCCccCCCHHHHHHHHHHHHHc--CCEEEEecCCCCCccCCCCccChhhhhhccccccC
Q 044773 2 YQLAQKRHLKVKGVLVTNP-SNPLGTTMSRNELNLLVNFITEK--NIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENT 78 (289)
Q Consensus 2 l~~~~~~~~~~~~i~l~~p-~NPtG~~~~~~~l~~l~~~~~~~--~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (289)
++++++ +++|++++--. ..-.=..++.++++++++++|+. ++++++|++|..+.-... +.
T Consensus 147 i~~~~~--~~tk~v~IQRSrGYs~R~sl~i~~I~~~i~~vk~~~p~~iifVDNCYGEFvE~~E--P~------------- 209 (403)
T PF06838_consen 147 IKKALK--PNTKMVLIQRSRGYSWRPSLTIEEIKEIIKFVKEINPDVIIFVDNCYGEFVETQE--PT------------- 209 (403)
T ss_dssp HHHHHH--TTEEEEEEE-S-TTSSS----HHHHHHHHHHHHHH-TTSEEEEE-TTTTTTSSS---GG-------------
T ss_pred HHHhhc--cCceEEEEecCCCCCCCCCCCHHHHHHHHHHHHhhCCCeEEEEeCCcceeccccC--cc-------------
Confidence 455555 57999887755 34344458889999999999884 899999999998632211 11
Q ss_pred CCCCceEEEecCccccCCCC--ceEEEEEecCHHHHHHHHhcc
Q 044773 79 EVWNRVHIVYSLSKDLGLPG--FRVGAIYSNDDTVVAAATKMS 119 (289)
Q Consensus 79 d~~~~~i~i~s~sK~~g~~G--~r~G~i~~~~~~~~~~~~~~~ 119 (289)
.-+-+++.||+-|-.| .| --=|||+++.+.+.....++.
T Consensus 210 -~vGADl~aGSLIKNpG-GgiAptGGYIaGr~~lVe~~a~RLT 250 (403)
T PF06838_consen 210 -EVGADLMAGSLIKNPG-GGIAPTGGYIAGRKDLVERAAYRLT 250 (403)
T ss_dssp -GGT-SEEEEETTSGGG-TTT-SS-EEEEESHHHHHHHHHHHS
T ss_pred -ccchhheeccceeCCC-CCccCcCCEEechHHHHHHHHhhhc
Confidence 1145589999999987 32 123999997655555555554
No 384
>COG1003 GcvP Glycine cleavage system protein P (pyridoxal-binding), C-terminal domain [Amino acid transport and metabolism]
Probab=97.01 E-value=0.1 Score=47.33 Aligned_cols=221 Identities=12% Similarity=0.098 Sum_probs=126.4
Q ss_pred CCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEec
Q 044773 10 LKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVYS 89 (289)
Q Consensus 10 ~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~s 89 (289)
.++.+++++|||- .|.- ++++.+|+++.+++|..|+.|-+--.-..+ .-.+. +.+.++.=.-
T Consensus 203 ~~~AalMiTnPsT-~GvF--E~~I~ei~~ivH~~Gg~vY~DGANlNA~vG-~~rPG--------------d~G~DV~HlN 264 (496)
T COG1003 203 DNLAALMITNPST-LGVF--EEDIREICEIVHEAGGQVYYDGANLNAIVG-LARPG--------------DMGFDVVHLN 264 (496)
T ss_pred cceeEEEeccCcc-cccc--hhhHHHHHHHHHHcCCEEEecCcchhhhhc-ccccc--------------ccccceEEee
Confidence 4688899999853 3543 788999999999999999999886432222 11111 2233454556
Q ss_pred CccccC----CCCceEEEEEecCHHHHHHHHh----------------------ccccCCCChHHHHHHHHHhCCchHHH
Q 044773 90 LSKDLG----LPGFRVGAIYSNDDTVVAAATK----------------------MSSFGLVSSQTQYLLSALLSDKKFAQ 143 (289)
Q Consensus 90 ~sK~~g----~~G~r~G~i~~~~~~~~~~~~~----------------------~~~~~~~~~~~q~~~~~~l~~~~~~~ 143 (289)
++|+|. ..|-.+|=|... ..+..++-. ...++ .|.........++.... .
T Consensus 265 LHKTF~iPHGGGGPG~GPvgVk-~~L~pfLP~p~~~~~~~~y~~~~~~~~s~g~~~a~~-Gs~~il~~a~~YI~~mG--~ 340 (496)
T COG1003 265 LHKTFCIPHGGGGPGAGPVGVK-AHLAPFLPGPVVYHDVGEYRLDYDGKKSIGVSAAPY-GSASILPIAWAYIRMMG--A 340 (496)
T ss_pred cccccccCCCCCCCCCCceehH-hhccccCCCCcccCCCccccccCCCCccceeecccc-CcchHHHHHHHHHHHHh--H
Confidence 888883 234445555542 222221110 11122 33333333334443321 3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhc-CCceecCC-ceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCCC
Q 044773 144 NYISENKKRLKQRHRKLVSGLEKA-GISCLKSN-AGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTE 221 (289)
Q Consensus 144 ~~~~~~~~~~~~~~~~l~~~l~~~-g~~~~~~~-~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~ 221 (289)
+-+++..+..--+.+++...|+.. .+.+.+.. ..-=+.++......... ....+++++|+ .+|+.- |...|...-
T Consensus 341 ~GL~~ase~AvLNANYia~rL~~~y~~~y~~~~~~~HE~ild~r~l~~~~G-v~~~DvAKrLl-D~GfHa-PT~~FPliV 417 (496)
T COG1003 341 DGLKQASEVAVLNANYIARRLKGYYPVPYTGENRVAHECILDARPLKKETG-VRALDVAKRLL-DYGFHA-PTMYFPLIV 417 (496)
T ss_pred HHHHHHHHHHHHhHHHHHHHhhhcCccccCCCCcceeEEEeechHhHhhcC-CcHHHHHHHHH-hcCCCC-CcccCcccc
Confidence 336666677777889999999874 22222211 11112234332211111 33467999998 668874 344554333
Q ss_pred CCeEEEEEec-CCHHHHHHHHHHHHHHHHHHHHhh
Q 044773 222 PGWFRVCFAN-MSEDTLKLSMQRLKAFVDSITTTL 255 (289)
Q Consensus 222 ~~~~Ris~~~-~~~e~l~~~l~~l~~~l~~~~~~~ 255 (289)
.+.+-|=+.- .+.+++|+.++++.++.++.....
T Consensus 418 ~~tLMIEPTEsEsk~eLDrf~dami~I~~Ea~~~~ 452 (496)
T COG1003 418 AGTLMIEPTESESKEELDRFIDAMIAIREEADAVP 452 (496)
T ss_pred ccceeecCCCCCCHHHHHHHHHHHHHHHHHHHhcc
Confidence 5666776643 578999999999999988877654
No 385
>PRK12566 glycine dehydrogenase; Provisional
Probab=96.83 E-value=0.1 Score=52.41 Aligned_cols=199 Identities=15% Similarity=0.081 Sum_probs=113.3
Q ss_pred CccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEe--
Q 044773 11 KVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVY-- 88 (289)
Q Consensus 11 ~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~-- 88 (289)
++-++++.+|+. .|.+.+ +++|.+++++.|+++| +.+. .+.++.-..+ . .++-+|++|
T Consensus 208 ~~~~v~vq~P~~-~G~i~d---~~~i~~~~h~~gal~~-~~~d-~laL~ll~~P--g------------e~GADI~vG~~ 267 (954)
T PRK12566 208 AVFGALLQYPDT-HGEIRD---LRPLIDQLHGQQALAC-VAAD-LLSLLVLTPP--G------------ELGADVVLGST 267 (954)
T ss_pred CEEEEEEECCCC-ceEEcc---HHHHHHHHHHcCCEEE-EEeC-HHHHhCCCCh--h------------hcCCcEEeeCC
Confidence 577888989964 588744 9999999999998766 3332 1223222211 1 335556666
Q ss_pred -cCccccCCCCceEEEEEecCHHHHHH---------------------------HH--hccccCCCChHHHHHHHHHhCC
Q 044773 89 -SLSKDLGLPGFRVGAIYSNDDTVVAA---------------------------AT--KMSSFGLVSSQTQYLLSALLSD 138 (289)
Q Consensus 89 -s~sK~~g~~G~r~G~i~~~~~~~~~~---------------------------~~--~~~~~~~~~~~~q~~~~~~l~~ 138 (289)
+|+=-+|.+|=-.||+.++++..... ++ +..+.. ++.....++.+.+-.
T Consensus 268 Q~fGvp~~~GGP~ag~~a~~~~~~R~~PGRivG~s~D~~G~~a~~l~LqtREQHIRReKAtSNI-CT~qaL~A~~a~~Y~ 346 (954)
T PRK12566 268 QRFGVPMGYGGPHAAYFACRDDYKRAMPGRIIGVSRDARGNTALRMALQTREQHIRREKANSNI-CTAQVLLANIAGFYA 346 (954)
T ss_pred CcCCCCCCCCCCCeeeeeehHHHHhhCCCCccceeecCCCCeeeehhhhHHHHHhhhccccchh-hHHHHHHHHHHHHHH
Confidence 44444555566689998865433321 11 112222 332222222222221
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceecCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCC
Q 044773 139 KKFAQNYISENKKRLKQRHRKLVSGLEKAGISCLKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCH 218 (289)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~ 218 (289)
.-...+=++++.++...+..++.+.|.+.|++.... .||=-+.+.-... ..++....+ +.||.++-.
T Consensus 347 ~~~Gp~Gl~~ia~~~~~~a~~l~~~l~~~g~~~~~~--~fF~~~~v~~~~~------~~~~~~~a~-~~~~n~r~~---- 413 (954)
T PRK12566 347 VYHGPEGLKRIAQRVHRLTAILAAGLEAKGIKRLNR--HFFDTLTLEVGGA------QAAIIESAE-AARINLRIL---- 413 (954)
T ss_pred HHhChHHHHHHHHHHHHHHHHHHHHHHhcCCccccC--CccceEEEEccCC------HHHHHHHHH-HCCCeeEEe----
Confidence 000033367777888888889999999888776433 4553332221101 123555444 557777642
Q ss_pred CCCCCeEEEEEec-CCHHHHHHHHHHHH
Q 044773 219 CTEPGWFRVCFAN-MSEDTLKLSMQRLK 245 (289)
Q Consensus 219 ~~~~~~~Ris~~~-~~~e~l~~~l~~l~ 245 (289)
+.+.+.||+.. ++.+++..++..+.
T Consensus 414 --~~~~~~~s~de~~~~~~~~~~~~~f~ 439 (954)
T PRK12566 414 --GRGRLGVSLDETCDEATVARLFDIFL 439 (954)
T ss_pred --CCCeEEEEeCCCCCHHHHHHHHHHhc
Confidence 24578899954 68899999998884
No 386
>KOG0629 consensus Glutamate decarboxylase and related proteins [Amino acid transport and metabolism]
Probab=96.82 E-value=0.052 Score=49.06 Aligned_cols=200 Identities=12% Similarity=0.220 Sum_probs=107.5
Q ss_pred HHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEecCccccCCCCceEEEEEecCH
Q 044773 30 RNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVYSLSKDLGLPGFRVGAIYSNDD 109 (289)
Q Consensus 30 ~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~s~sK~~g~~G~r~G~i~~~~~ 109 (289)
-++|+.|+++|.+|++++.+|.+|.+..+-.........- ...-.-+.-+.+|.+| ..++++..+.+.+
T Consensus 269 FDdL~~iadiC~k~~lWmHvDAAwGGglLmS~k~R~kl~G----------iera~SvtwnpHK~~g-aplqCsa~l~r~~ 337 (510)
T KOG0629|consen 269 FDDLNGIADICEKHKLWMHVDAAWGGGLLMSRKHRHKLTG----------IERANSVTWNPHKLMG-APLQCSAFLTREE 337 (510)
T ss_pred cCcHHHHHHHHHhcCEEEEeecccccccccChhhHhhccC----------ccccCceeecHHHhhc-CcchhhHHHHHHH
Confidence 3459999999999999999999998743322221111111 0111134567899999 7789988888665
Q ss_pred HHHHHHHhc-------------cccCCC----------ChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 044773 110 TVVAAATKM-------------SSFGLV----------SSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEK 166 (289)
Q Consensus 110 ~~~~~~~~~-------------~~~~~~----------~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 166 (289)
-+...-+.. .++-+. ..+-...+..+=.... .++..+++-+..+++.+.+++
T Consensus 338 gll~~Cn~~~A~YLFq~dK~YdvS~DTgdK~iQCGRh~D~FKlWlmwkaKG~~G-----fe~~v~k~~~lA~yl~~~lre 412 (510)
T KOG0629|consen 338 GLLQRCNQMSAIYLFQQDKFYDVSYDTGDKAIQCGRHVDVFKLWLMWKAKGTQG-----FEAQVDKCLRLAEYLYDRLRE 412 (510)
T ss_pred HHHHhhcccchhhhhccCceeecccccccchhhcCccccHHHHHHHHHhccccc-----HHHHHHHHHHHHHHHHHHHHh
Confidence 544322211 011111 1122333333333333 355566778888999999988
Q ss_pred c-CCc-eec--CCceEEEEEecCccccCC--ChhhH-------HHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEEec--
Q 044773 167 A-GIS-CLK--SNAGLFCWVDMRHLLSSN--TFEAE-------MELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFAN-- 231 (289)
Q Consensus 167 ~-g~~-~~~--~~~g~~~~i~~~~~~~~~--~~~~~-------~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ris~~~-- 231 (289)
. ++. +.. |+...+.+-.+|.....- ...-. -.+-+.+.++ |.... |.......+.++|+.+++
T Consensus 413 r~~~~~l~~~~pe~~nv~fw~vp~~lR~~~~~~e~~~rL~kVaPkIK~~Mm~~-Gt~Mi-~YqPl~~~~nffr~v~sn~a 490 (510)
T KOG0629|consen 413 REGFEMLFELEPEHVNVCFWYVPPSLRGWQENPERDSRLVKVAPKIKERMMKK-GTTMI-GYQPLGDKPNFFRMVISNPA 490 (510)
T ss_pred cccceehhcCCCceEEEeeccCchHhccCcccchhhhHHHhhCcHHHHHHHhc-cceee-Eecccccccchhheecccch
Confidence 7 322 222 443333333333321110 00000 0133445533 55543 111111335689999965
Q ss_pred CCHHHHHHHHHHHHHH
Q 044773 232 MSEDTLKLSMQRLKAF 247 (289)
Q Consensus 232 ~~~e~l~~~l~~l~~~ 247 (289)
.+.++++-+++.|..+
T Consensus 491 ~~~ad~dflldEIerl 506 (510)
T KOG0629|consen 491 LTEADLDFLLDEIERL 506 (510)
T ss_pred hhhhhHHHHHHHHHHh
Confidence 4788999998887664
No 387
>COG0403 GcvP Glycine cleavage system protein P (pyridoxal-binding), N-terminal domain [Amino acid transport and metabolism]
Probab=96.52 E-value=0.42 Score=43.43 Aligned_cols=201 Identities=15% Similarity=0.188 Sum_probs=111.0
Q ss_pred CCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEe-cCCCCCccCCCCccChhhhhhccccccCCCCCceEEEe
Q 044773 10 LKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISD-EIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVY 88 (289)
Q Consensus 10 ~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~D-ea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~ 88 (289)
.++-++++.+|+. .|. ...++.+|.+.+++.++++++= |.-+ +.+-.+ + ...+-+|++|
T Consensus 209 ~~~~gv~vQyP~~-~G~--~~~d~~~l~~~~h~~~al~~v~aDpla-L~LL~p--P--------------Ge~GADIvvG 268 (450)
T COG0403 209 GDVFGVLVQYPNT-FGI--VEEDLRALIEAAHSAGALVIVAADPLA-LGLLKP--P--------------GEFGADIVVG 268 (450)
T ss_pred cCeEEEEEecCCC-CCc--cchhHHHHHHHHhhcCCEEEEEechhH-hhccCC--c--------------cccCCceEEe
Confidence 4677889998863 463 3457999999999998776652 2211 111011 1 2335557777
Q ss_pred cC---ccccCCCCceEEEEEecCHHHHH---------------------------HHHh--ccccCCCChHHHHHHHHHh
Q 044773 89 SL---SKDLGLPGFRVGAIYSNDDTVVA---------------------------AATK--MSSFGLVSSQTQYLLSALL 136 (289)
Q Consensus 89 s~---sK~~g~~G~r~G~i~~~~~~~~~---------------------------~~~~--~~~~~~~~~~~q~~~~~~l 136 (289)
+. +=-+|.+|-.+||+.++++.... .+++ ..+.. |+.....++++.+
T Consensus 269 ~~QrfGvPmgfGGPhag~fA~~~~~~R~mPGRlVG~S~D~~G~~A~rLaLQTREQHIRReKATSNI-CTnQaLlA~~As~ 347 (450)
T COG0403 269 SAQRFGVPMGFGGPHAGYFAVKDEFKRQMPGRLVGVSVDAAGKRAFRLALQTREQHIRREKATSNI-CTNQALLALAASM 347 (450)
T ss_pred cCcccCCCcCCCCcceeeeeEhHhHhhcCCCceeeeeecCCCCchhhhhHHHHHHHHhhhccchhh-hHHHHHHHHHHHH
Confidence 54 33445567788999886554332 0111 12222 3322222222221
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHhc--CCceecCCceEE--EEEecCccccCCChhhHHHHHHHHHHhcCeEEe
Q 044773 137 SDKKFAQNYISENKKRLKQRHRKLVSGLEKA--GISCLKSNAGLF--CWVDMRHLLSSNTFEAEMELWKKIVYDVKLNIS 212 (289)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~--g~~~~~~~~g~~--~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~ 212 (289)
-..-....-++++.++..+...++.+.|++. |+++... .+| +.++++. .. ...+..... ..|+.+.
T Consensus 348 y~~~hGp~GLk~iA~r~~~~a~~la~~L~~~~~g~~~~~~--~fFdt~~v~~~~--~~-----~~~l~~~~~-~~G~~L~ 417 (450)
T COG0403 348 YAVYHGPQGLKEIAERIHRLAAYLAAGLKEIGAGVELVFD--HFFDTFTVRVPE--EV-----AEALLAAAI-AGGINLR 417 (450)
T ss_pred HHHHhChHHHHHHHHHHHHHHHHHHHHHhhcCCceEeccc--cceeeEEEecch--hH-----HHHHHHHHH-hcCCcee
Confidence 1100014447888888899999999999966 4655544 455 3344442 10 122333332 4466555
Q ss_pred CCCCCCCCCCCeEEEEEec-CCHHHHHHHHHHHHHH
Q 044773 213 PGSSCHCTEPGWFRVCFAN-MSEDTLKLSMQRLKAF 247 (289)
Q Consensus 213 pg~~f~~~~~~~~Ris~~~-~~~e~l~~~l~~l~~~ 247 (289)
.- ....+=+++.. .+.++++.+++.+...
T Consensus 418 ~~------~~~~~~ia~tEt~t~~~i~~l~~~~~~~ 447 (450)
T COG0403 418 RV------DADTVLIALTETTTKEDIDALVAAFGGV 447 (450)
T ss_pred ee------cCCceEEEeecccCHHHHHHHHHHHhhh
Confidence 32 23466777743 5789999998887654
No 388
>TIGR03811 tyr_de_CO2_Ent tyrosine decarboxylase, Enterococcus type. This model represents tyrosine decarboxylases in the family of the Enterococcus faecalis enzyme Tdc. These enzymes often are encoded next to tyrosine/tyramine antiporter, together comprising a system in which tyrosine decarboxylation can protect against exposure to acid conditions. This clade differs from the archaeal tyrosine decarboxylases associated with methanofuran biosynthesis.
Probab=96.04 E-value=0.31 Score=47.10 Aligned_cols=158 Identities=15% Similarity=0.111 Sum_probs=85.6
Q ss_pred EEEEeCCCCCCccCCCHHHHHHHHHHH---HHcCC--EEEEecCCCCCc---cCCCC--cc-------------------
Q 044773 14 GVLVTNPSNPLGTTMSRNELNLLVNFI---TEKNI--HLISDEIYSGTV---FSSPG--FV------------------- 64 (289)
Q Consensus 14 ~i~l~~p~NPtG~~~~~~~l~~l~~~~---~~~~~--~li~Dea~~~~~---~~~~~--~~------------------- 64 (289)
+|+.+-.+-.+|.+=+ +++|+++| +++|+ ++.+|.||+++. +-... +.
T Consensus 281 ~VVataGTT~~GaiDp---l~eI~~l~~~~~~~gl~~~lHVDAAyGG~~~~l~~~~~~~~~p~~~~~~~~~~~~~f~~~~ 357 (608)
T TIGR03811 281 GVVGVVGSTEEGAVDG---IDKIVALRNKLMKEGIYFYLHVDAAYGGYGRAIFLDEDDNFIPYDDLQEVHAEYGVFTEKK 357 (608)
T ss_pred EEEEEcCCcCCcccCC---HHHHHHHHHHHHHcCCceeEeeeccccchhhhhhccccccccccchhhccccccccccccc
Confidence 4455555667888877 66666665 77887 699999999852 11100 00
Q ss_pred -----ChhhhhhccccccCCCCCceEEEecCccccCCCCceEEEEEecCHHHHHHHHhccccC----------------C
Q 044773 65 -----SIMEILKDRNCENTEVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDTVVAAATKMSSFG----------------L 123 (289)
Q Consensus 65 -----~~~~~~~~~~~~~~d~~~~~i~i~s~sK~~g~~G~r~G~i~~~~~~~~~~~~~~~~~~----------------~ 123 (289)
.....+. ....-+-+...++|.+. ....+|.++.++..+.+.+.....|. .
T Consensus 358 ~~l~~~~~~~l~-------gle~ADSItvDpHK~g~-~Py~~G~ll~Rd~~~~~~~~~~a~Yl~~~~~~~p~~~g~~~le 429 (608)
T TIGR03811 358 EYISREVYNAYK-------AISEAESVTIDPHKMGY-IPYSAGGIVIQDIRMRDVISYFATYVFEKGADIPALLGAYILE 429 (608)
T ss_pred ccccHhHHHHHh-------cCcCceEEEeCcccccc-cCCCeEEEEEeCHHHHHHHhcCcchhccccccCccccccccee
Confidence 0111111 12234456778999886 66789999998887665543322111 1
Q ss_pred CChHHHHHHH--HHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcC-------Cce---ecCCceEEEEE
Q 044773 124 VSSQTQYLLS--ALLSDKKFAQNYISENKKRLKQRHRKLVSGLEKAG-------ISC---LKSNAGLFCWV 182 (289)
Q Consensus 124 ~~~~~q~~~~--~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g-------~~~---~~~~~g~~~~i 182 (289)
++.+.-.++. ..++...+..+-..++.+..-+.++++.+.|.+.+ +++ .+|+-+..++.
T Consensus 430 gSR~ga~AlklW~~lr~l~~G~~Gyg~~i~~~i~~A~~~~~~L~~~~~~~~~~~~el~~~~~pdlniV~Fr 500 (608)
T TIGR03811 430 GSKAGATAASVWAAHKVLPLNVTGYGKLIGASIEGAHRFYDFLNNLEFKVGDKEIEVHPLTKPDFNMVDYV 500 (608)
T ss_pred cCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCeeEEecCCCCcceEEEE
Confidence 2222221222 22222100123345566666677777888887642 443 45665554443
No 389
>COG1932 SerC Phosphoserine aminotransferase [Coenzyme metabolism / Amino acid transport and metabolism]
Probab=96.03 E-value=0.32 Score=43.28 Aligned_cols=157 Identities=12% Similarity=0.075 Sum_probs=89.2
Q ss_pred CCceEEEecCccccCCCCceEEEEEecCHHHHHHHHh-------ccc----cCCCChHHHHHHHHHhCCchHHHHH--HH
Q 044773 81 WNRVHIVYSLSKDLGLPGFRVGAIYSNDDTVVAAATK-------MSS----FGLVSSQTQYLLSALLSDKKFAQNY--IS 147 (289)
Q Consensus 81 ~~~~i~i~s~sK~~g~~G~r~G~i~~~~~~~~~~~~~-------~~~----~~~~~~~~q~~~~~~l~~~~~~~~~--~~ 147 (289)
....++-.+.=|.+|..| ++.++.++..+.+.-.. +.. -...|++...++..+...-.|+..+ ++
T Consensus 189 sk~dviyagaQKnlGpaG--ltvvIvr~~~l~r~~~~~~P~if~y~~~~~~~s~yNTPptfa~y~~~lv~~Wlk~~GGl~ 266 (365)
T COG1932 189 SKYDVIYAGAQKNLGPAG--LTVVIVRPDLLERAESYTLPSIFDYLTHADNGSMYNTPPTFAWYLLGLVFKWLKSQGGLE 266 (365)
T ss_pred hHcceEEEehhhccCccc--eEEEEEcHHHHhcccccCCchHhhchhhhccCCccCCcHHHHHHHHHHHHHHHHHcCCHH
Confidence 345577788999999777 88888876655443221 100 0112233333322222222222222 46
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCce---ec-CCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCC
Q 044773 148 ENKKRLKQRHRKLVSGLEKAGISC---LK-SNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPG 223 (289)
Q Consensus 148 ~~~~~~~~~~~~l~~~l~~~g~~~---~~-~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~ 223 (289)
.+.++-+++.+.|.+.+.+.++-. .+ .-+-+.+.+++.+.. .+ ..+...+ +++|+...-|. .-.+
T Consensus 267 ~~~~rn~~ka~~LY~~id~s~fy~~~v~~~~RS~mnV~f~~~~~~-----ld-~~fv~ea-e~~gl~~lkGh----r~vg 335 (365)
T COG1932 267 ALEARNQAKAQLLYDWIDKSDFYRNLVAKANRSRMNVTFTLVDAE-----LD-KGFVAEA-EAAGLIYLKGH----RSVG 335 (365)
T ss_pred HHHHHHHHHHHHHHHHHHhCCccccccchhhccceeEEEEcCcHH-----HH-HHHHHHH-HHcCCceeccc----cCCC
Confidence 666777788888999998875421 11 122344555555221 11 2345544 56677766662 1234
Q ss_pred eEEEEEec-CCHHHHHHHHHHHHHHHHH
Q 044773 224 WFRVCFAN-MSEDTLKLSMQRLKAFVDS 250 (289)
Q Consensus 224 ~~Ris~~~-~~~e~l~~~l~~l~~~l~~ 250 (289)
.+|+++.+ .+.++++.+++-++.+.+.
T Consensus 336 GmRasiynA~~~e~veaL~~fm~~f~~~ 363 (365)
T COG1932 336 GLRASIYNAVPLEDVEALTDFMDWFEET 363 (365)
T ss_pred ceeeeeecCCCHHHHHHHHHHHHHHHHh
Confidence 59999965 7999999999988887665
No 390
>KOG3846 consensus L-kynurenine hydrolase [Amino acid transport and metabolism]
Probab=95.80 E-value=0.78 Score=40.07 Aligned_cols=210 Identities=12% Similarity=0.113 Sum_probs=111.8
Q ss_pred HhhhCCC-ccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCc
Q 044773 5 AQKRHLK-VKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNR 83 (289)
Q Consensus 5 ~~~~~~~-~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 83 (289)
.+.++.+ +.+|+++..+..||+.++ +.+|-..-...|++|=.|-+|+- |.-+..+- .|+.
T Consensus 207 ~IEkngDeiA~v~fSGvqyYTGQ~Fd---i~aIT~Agq~kgc~VGfDLAHAv----gNVpL~LH------------dWgV 267 (465)
T KOG3846|consen 207 TIEKNGDEIALVCFSGVQYYTGQYFD---IGAITFAGQFKGCLVGFDLAHAV----GNVPLQLH------------DWGV 267 (465)
T ss_pred HHHhcCCeEEEEEeecceeecccccc---hhhhhhcccCCCcEechhhhhhh----cCCceEEe------------ecCC
Confidence 3444433 455567777999999999 77776555567999999999983 22222211 3466
Q ss_pred eEEEecCccccCCCCceEEEEEecCHHHHHHHHhcc------------------------ccCCCChHHHHHHHHHhCCc
Q 044773 84 VHIVYSLSKDLGLPGFRVGAIYSNDDTVVAAATKMS------------------------SFGLVSSQTQYLLSALLSDK 139 (289)
Q Consensus 84 ~i~i~s~sK~~g~~G~r~G~i~~~~~~~~~~~~~~~------------------------~~~~~~~~~q~~~~~~l~~~ 139 (289)
++.+.+-=|.+..+.-.+|-+...++...+...++. ++. .+.+....++++..+.
T Consensus 268 DFACWCSYKYlnaGaGgIgGlFvHekh~~~~~prl~GWwgh~~s~RF~Mdnvl~lipGa~GfR-iSNPpi~~v~al~~SL 346 (465)
T KOG3846|consen 268 DFACWCSYKYLNAGAGGIGGLFVHEKHTKESLPRLAGWWGHDPSKRFQMDNVLELIPGALGFR-ISNPPIIDVVALRSSL 346 (465)
T ss_pred ceEEEeeecccccCCCccceeeeehhhhcchhhHHhhhccCCcchhhhhccccccCccccccc-cCCCcHhHHHHHHhhH
Confidence 676666668874222234444443333333222221 222 2222233333444433
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHh----c-C-----------CceecC----CceEEEEEecCccccCCChhhHHHH
Q 044773 140 KFAQNYISENKKRLKQRHRKLVSGLEK----A-G-----------ISCLKS----NAGLFCWVDMRHLLSSNTFEAEMEL 199 (289)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~l~~~l~~----~-g-----------~~~~~~----~~g~~~~i~~~~~~~~~~~~~~~~~ 199 (289)
+. ..+.....++.+.-.+...|+. . | +.+..| +.|.-+.+.++.+.+ ++
T Consensus 347 e~---F~q~~~~~lRkrS~lLTgYleyL~k~~~g~~~~~rt~Kl~~~IiTP~~~~erGcQLsl~Fssp~~--------~v 415 (465)
T KOG3846|consen 347 EL---FAQFNINELRKRSLLLTGYLEYLLKASKGYKHPLRTEKLFFTIITPTSTDERGCQLSLYFSSPTP--------KV 415 (465)
T ss_pred HH---HHHhhHHHHhhhhhhHHhHHHHHHHHhcccCchhhhcceeEEEeCCcccccccceEEEEeCCCch--------HH
Confidence 22 1112223333333333222222 1 2 122222 225555566555432 36
Q ss_pred HHHHHHhcCeEEeCCCCCCCCCCCeEEEEEec--CCHHHHHHHHHHHHHHHHHHH
Q 044773 200 WKKIVYDVKLNISPGSSCHCTEPGWFRVCFAN--MSEDTLKLSMQRLKAFVDSIT 252 (289)
Q Consensus 200 ~~~ll~~~gi~v~pg~~f~~~~~~~~Ris~~~--~~~e~l~~~l~~l~~~l~~~~ 252 (289)
+.+|- ++|+.+-. ..++.+|+++.. ++-.++..++..|.++++...
T Consensus 416 fqeL~-krGv~~Dk------R~PNvIRvAPvpLYN~f~Dvy~f~n~L~e~~d~~e 463 (465)
T KOG3846|consen 416 FQELH-KRGVIGDK------RRPNVIRVAPVPLYNTFSDVYIFVNALNEAMDKLE 463 (465)
T ss_pred HHHHH-HcCeeccc------cCCCceEeecchhhccHHHHHHHHHHHHHHHHHhh
Confidence 66654 66887532 235689999943 688999999999998887654
No 391
>KOG2040 consensus Glycine dehydrogenase (decarboxylating) [Amino acid transport and metabolism]
Probab=94.36 E-value=3.6 Score=39.72 Aligned_cols=222 Identities=14% Similarity=0.116 Sum_probs=122.4
Q ss_pred CccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEecC
Q 044773 11 KVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVYSL 90 (289)
Q Consensus 11 ~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~s~ 90 (289)
+..+++++.|+-- |. =++.+++++++.+++|--|+.|.+--.-..+-..+ ++.+-++.=--+
T Consensus 680 ~Laa~MvTYPST~-Gv--fE~~i~d~cd~iHehGGQVYlDGANMNAqVGlc~p---------------Gd~GaDV~HLNL 741 (1001)
T KOG2040|consen 680 NLAALMVTYPSTH-GV--FEEGIDDICDIIHEHGGQVYLDGANMNAQVGLCRP---------------GDIGADVCHLNL 741 (1001)
T ss_pred hhheeEEeccccc-cc--ccccHHHHHHHHHhcCCEEEecCCCccceecccCC---------------ccccccceeecc
Confidence 5678899988532 33 25679999999999999999998764221110110 111223444457
Q ss_pred cccc----CCCCceEEEEEecCHHHHHHHHh-----------ccccCC------CCh---HHHHHHHHHhCCchHHHHHH
Q 044773 91 SKDL----GLPGFRVGAIYSNDDTVVAAATK-----------MSSFGL------VSS---QTQYLLSALLSDKKFAQNYI 146 (289)
Q Consensus 91 sK~~----g~~G~r~G~i~~~~~~~~~~~~~-----------~~~~~~------~~~---~~q~~~~~~l~~~~~~~~~~ 146 (289)
+|+| |..|-.+|=|.. ++.++.++.. ....+. .|. +..++...+..... +
T Consensus 742 HKTFcIPHGGGGPg~gPIgV-K~HLapfLP~HpVvs~~~~~~~~~~gsVsaaP~Gsa~ILpISwaYikmMG~~G-----L 815 (1001)
T KOG2040|consen 742 HKTFCIPHGGGGPGMGPIGV-KKHLAPFLPSHPVVSPGRPEDTSPVGSVSAAPWGSALILPISWAYIKMMGSGG-----L 815 (1001)
T ss_pred cceeeecCCCCCCCCCccch-hhhccccCCCCCccCCCCCCCCCCccceeccCCCcceeehhHHHHHHHhcccc-----c
Confidence 7777 223344555544 2222222110 000110 222 22333334444433 3
Q ss_pred HHHHHHHHHHHHHHHHHHHhc-CCceecCCce--EEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCC
Q 044773 147 SENKKRLKQRHRKLVSGLEKA-GISCLKSNAG--LFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPG 223 (289)
Q Consensus 147 ~~~~~~~~~~~~~l~~~l~~~-g~~~~~~~~g--~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~ 223 (289)
+...+..--+.+++.++|+.+ .+-+....+- -=..+++........ .++.+++++|. .+|+.-- ...| +-.+
T Consensus 816 ~~as~~AiLNaNYMakRLe~hYkil~~~~~~~vaHEFIlD~r~fK~~ag-ieavDvAKRL~-DYgFHaP-Tmsw--PV~g 890 (1001)
T KOG2040|consen 816 KDASKIAILNANYMAKRLESHYKILFRGENGLVAHEFILDLRPFKKTAG-IEAVDVAKRLM-DYGFHAP-TMSW--PVAG 890 (1001)
T ss_pred chhhHHHhhhhHHHHHHHhhccceeEecCCcceeeeeeeechhhccccC-CcHHHHHHHHH-hccCCCC-cccc--ccCC
Confidence 455556667888999999987 4444444431 112245554322222 34456888875 7888643 2222 3356
Q ss_pred eEEEEEec-CCHHHHHHHHHHHHHHHHHHHHhhhccccc
Q 044773 224 WFRVCFAN-MSEDTLKLSMQRLKAFVDSITTTLHNQSNH 261 (289)
Q Consensus 224 ~~Ris~~~-~~~e~l~~~l~~l~~~l~~~~~~~~~~~~~ 261 (289)
.+-|-+.. .+.+|+|+.++++-.+-++...-....+++
T Consensus 891 tLMIEPTESE~k~ElDRfcdAliSIreEI~~ie~G~~dk 929 (1001)
T KOG2040|consen 891 TLMIEPTESEDKAELDRFCDALISIREEIAQIEEGRQDK 929 (1001)
T ss_pred ceEeccCccccHHHHHHHHHHHHHHHHHHHHHHccCCCc
Confidence 67777743 577899999999988888776655554444
No 392
>COG4100 Cystathionine beta-lyase family protein involved in aluminum resistance [Inorganic ion transport and metabolism]
Probab=92.72 E-value=0.86 Score=39.69 Aligned_cols=88 Identities=23% Similarity=0.235 Sum_probs=57.6
Q ss_pred CCccEEEEeCC-CCCCccCCCHHHHHHHHHHHHHc--CCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEE
Q 044773 10 LKVKGVLVTNP-SNPLGTTMSRNELNLLVNFITEK--NIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHI 86 (289)
Q Consensus 10 ~~~~~i~l~~p-~NPtG~~~~~~~l~~l~~~~~~~--~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~ 86 (289)
+++|+|-+.-. ..--=-.++..++++++.+.|+- ++++.+|++|..+.-.-.+ .. -+-+++
T Consensus 164 ~~tkli~IQRS~GY~~RpS~~I~eI~~~i~~vk~inpn~ivFVDNCYGEFvE~~EP-t~---------------vGaDli 227 (416)
T COG4100 164 DRTKLIGIQRSKGYAWRPSLSIAEIEEMITFVKEINPNVIVFVDNCYGEFVEEKEP-TH---------------VGADLI 227 (416)
T ss_pred ccceEEEEEeccCcCCCCcccHHHHHHHHHHHHhcCCCEEEEEeccchhhhhccCc-cc---------------cchhhh
Confidence 57898866543 22111137888999999999884 8999999999987433222 11 134477
Q ss_pred EecCccccCCCCc--eEEEEEecCHHHHHH
Q 044773 87 VYSLSKDLGLPGF--RVGAIYSNDDTVVAA 114 (289)
Q Consensus 87 i~s~sK~~g~~G~--r~G~i~~~~~~~~~~ 114 (289)
-||+-|--| .|+ --||+.++.+.+...
T Consensus 228 AGSLIKNpG-GgiaktGGYiaGk~~~ve~~ 256 (416)
T COG4100 228 AGSLIKNPG-GGIAKTGGYIAGKAELVEAA 256 (416)
T ss_pred ccceeeCCC-CceeeccceeechHHHHHhh
Confidence 889988876 431 227888865555443
No 393
>KOG2790 consensus Phosphoserine aminotransferase [Coenzyme transport and metabolism; Amino acid transport and metabolism]
Probab=88.40 E-value=4.1 Score=35.36 Aligned_cols=153 Identities=15% Similarity=0.181 Sum_probs=83.7
Q ss_pred CCCceEEEecCccccCCCCceEEEEEecCHHHHHHHHh-------------ccccCCCChHHHH----HHHHHhCCchHH
Q 044773 80 VWNRVHIVYSLSKDLGLPGFRVGAIYSNDDTVVAAATK-------------MSSFGLVSSQTQY----LLSALLSDKKFA 142 (289)
Q Consensus 80 ~~~~~i~i~s~sK~~g~~G~r~G~i~~~~~~~~~~~~~-------------~~~~~~~~~~~q~----~~~~~l~~~~~~ 142 (289)
-....+++.+.-|-+|..|+- .++.++..+...... -+-+.+++....+ +...+++.+.
T Consensus 193 vsk~gvi~aGAQKN~G~aG~T--vvivr~dllg~~~~~tP~v~dyk~~~~NnSlyNTpP~f~iy~~~Lv~~~il~~GG-- 268 (370)
T KOG2790|consen 193 VSKFGVIFAGAQKNVGPAGVT--VVIVRKDLLGNALDITPSVLDYKIMDKNNSLYNTPPCFGIYVMGLVFEWILEKGG-- 268 (370)
T ss_pred chhcceEEeccccccCccccE--EEEEehhhhcccccCCccccceeeeccccccccCCCeeeeeehhhHHHHHHhccc--
Confidence 345557788899999977843 344444444332211 1122333333333 3334444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc-CCceecCCc----eEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCC
Q 044773 143 QNYISENKKRLKQRHRKLVSGLEKA-GISCLKSNA----GLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSC 217 (289)
Q Consensus 143 ~~~~~~~~~~~~~~~~~l~~~l~~~-g~~~~~~~~----g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f 217 (289)
++.+.+.-.+..+.+.+.+.+. |+-..+-+- -|-+.+++. ++.. +.++.....++ ++.-.-|.
T Consensus 269 ---l~a~e~~n~~KskllYd~iD~s~gfy~cpVe~~~RS~MNV~Fri~----~d~L--e~eFLkeA~~~-~mv~LKGh-- 336 (370)
T KOG2790|consen 269 ---LAAMEKLNQEKSKLLYDAIDNSNGFYRCPVEPSVRSRMNVPFRIE----KDEL--EAEFLKEAAKE-HMVQLKGH-- 336 (370)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHhcCCeEEcccchhhhhhcccceeec----chHH--HHHHHHHHHHh-hhhccccc--
Confidence 3556666778889999999877 654333222 222333333 2111 13455555544 33322222
Q ss_pred CCCCCCeEEEEEec-CCHHHHHHHHHHHHHHHHH
Q 044773 218 HCTEPGWFRVCFAN-MSEDTLKLSMQRLKAFVDS 250 (289)
Q Consensus 218 ~~~~~~~~Ris~~~-~~~e~l~~~l~~l~~~l~~ 250 (289)
..-+.+|-|+-+ .+-++.+.+++-++++.+.
T Consensus 337 --RSVGGiRASlYNAisv~~~q~L~~~m~~F~k~ 368 (370)
T KOG2790|consen 337 --RSVGGIRASLYNAISVEEVQKLAAFMKEFQKK 368 (370)
T ss_pred --cccccchhhhhccccHHHHHHHHHHHHHHHHh
Confidence 113578999943 7899999988888887654
No 394
>PF03786 UxuA: D-mannonate dehydratase (UxuA); InterPro: IPR004628 This Fe2+-requiring enzyme plays a role in D-glucuronate catabolism in Escherichia coli. Mannonate dehydratase converts D-mannonate to 2-dehydro-3-deoxy-D-gluconate. An apparent equivalog is found in a glucuronate utilization operon in Bacillus stearothermophilus T-6.; GO: 0008927 mannonate dehydratase activity, 0006064 glucuronate catabolic process; PDB: 1TZ9_A 3FVM_A 3BDK_B 3BAN_B 3DBN_B.
Probab=59.27 E-value=21 Score=32.15 Aligned_cols=43 Identities=19% Similarity=0.265 Sum_probs=30.1
Q ss_pred hhCCCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEE
Q 044773 7 KRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLIS 49 (289)
Q Consensus 7 ~~~~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~ 49 (289)
++.+++..|+..-++.|.|.+|+.+++.++.+.+.++|+.+-+
T Consensus 21 rQ~~Gv~giV~al~~~p~g~~W~~e~i~~~k~~ie~~GL~~~v 63 (351)
T PF03786_consen 21 RQQPGVTGIVTALHDIPNGEVWDYEEIRALKERIEAAGLTLSV 63 (351)
T ss_dssp CTSTTEEEEEE--SSS-TTS---HHHHHHHHHHHHCTT-EEEE
T ss_pred HHhcCCCCeeeCCCCCCCCCCCCHHHHHHHHHHHHHcCCeEEE
Confidence 3445788888888899999999999999999999999876654
No 395
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=58.17 E-value=27 Score=32.06 Aligned_cols=53 Identities=13% Similarity=0.160 Sum_probs=34.4
Q ss_pred CCCHHHHHHHHHHHHHc-----CCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEecCc
Q 044773 27 TMSRNELNLLVNFITEK-----NIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVYSLS 91 (289)
Q Consensus 27 ~~~~~~l~~l~~~~~~~-----~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~s~s 91 (289)
.-...+++++++-+++. +.++++||+|. |+......+...+ ..+.++.||..+
T Consensus 83 ~~gvkdlr~i~e~a~~~~~~gr~tiLflDEIHR---fnK~QQD~lLp~v---------E~G~iilIGATT 140 (436)
T COG2256 83 TSGVKDLREIIEEARKNRLLGRRTILFLDEIHR---FNKAQQDALLPHV---------ENGTIILIGATT 140 (436)
T ss_pred cccHHHHHHHHHHHHHHHhcCCceEEEEehhhh---cChhhhhhhhhhh---------cCCeEEEEeccC
Confidence 44677899999888653 58999999998 4433333333333 335667777543
No 396
>PF12138 Spherulin4: Spherulation-specific family 4; InterPro: IPR021986 This protein is found in bacteria, archaea and eukaryotes. Proteins in this family are typically between 250 and 398 amino acids in length. There is a conserved NPG sequence motif and there are two completely conserved G residues that may be functionally important. Starvation will often induce spherulation - the production of spores - and this process may involve DNA-methylation. Changes in the methylation of spherulin4 are associated with the formation of spherules, but these changes are probably transient. Methylation of the gene accompanies its transcriptional activation, and spherulin4 mRNA is only detectable in late spherulating cultures and mature spherules. It is a spherulation-specific protein.
Probab=57.10 E-value=31 Score=29.56 Aligned_cols=47 Identities=17% Similarity=0.175 Sum_probs=33.1
Q ss_pred hHHHhhhCCCccEEEEeCCCCCCccC----CCHHHHHHHHHHHHHcCCEEE
Q 044773 2 YQLAQKRHLKVKGVLVTNPSNPLGTT----MSRNELNLLVNFITEKNIHLI 48 (289)
Q Consensus 2 l~~~~~~~~~~~~i~l~~p~NPtG~~----~~~~~l~~l~~~~~~~~~~li 48 (289)
|.+++..++.....+|.||+|=-|.. .+......|-++-+..|+.+|
T Consensus 21 l~~a~~~~p~~~f~vIiNP~sGPG~~~~~~pd~~Y~~~i~~L~~~~nv~vl 71 (253)
T PF12138_consen 21 LYDAIAAHPSVPFTVIINPNSGPGSAPDPWPDANYAAAIPRLNSYANVRVL 71 (253)
T ss_pred HHHHHhcCCCCcEEEEEcCCCCCCCCCCCCCCHHHHHHHHHHHhcCCCcEE
Confidence 34567888888899999997644655 677777777777555555543
No 397
>COG0296 GlgB 1,4-alpha-glucan branching enzyme [Carbohydrate transport and metabolism]
Probab=57.03 E-value=19 Score=35.11 Aligned_cols=35 Identities=14% Similarity=0.056 Sum_probs=29.4
Q ss_pred CccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCcc
Q 044773 24 LGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVF 58 (289)
Q Consensus 24 tG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~ 58 (289)
|-.-=++++++++++.|++.|+-||+|=+|..+.-
T Consensus 207 ~sryGtPedfk~fVD~aH~~GIgViLD~V~~HF~~ 241 (628)
T COG0296 207 TSRYGTPEDFKALVDAAHQAGIGVILDWVPNHFPP 241 (628)
T ss_pred cccCCCHHHHHHHHHHHHHcCCEEEEEecCCcCCC
Confidence 33344789999999999999999999999998633
No 398
>smart00642 Aamy Alpha-amylase domain.
Probab=54.19 E-value=21 Score=28.42 Aligned_cols=28 Identities=21% Similarity=0.337 Sum_probs=25.1
Q ss_pred CHHHHHHHHHHHHHcCCEEEEecCCCCC
Q 044773 29 SRNELNLLVNFITEKNIHLISDEIYSGT 56 (289)
Q Consensus 29 ~~~~l~~l~~~~~~~~~~li~Dea~~~~ 56 (289)
+.++++++++-|+++|+.||.|-+....
T Consensus 68 t~~d~~~lv~~~h~~Gi~vilD~V~NH~ 95 (166)
T smart00642 68 TMEDFKELVDAAHARGIKVILDVVINHT 95 (166)
T ss_pred CHHHHHHHHHHHHHCCCEEEEEECCCCC
Confidence 5689999999999999999999998753
No 399
>KOG2040 consensus Glycine dehydrogenase (decarboxylating) [Amino acid transport and metabolism]
Probab=53.24 E-value=2.4e+02 Score=27.95 Aligned_cols=85 Identities=19% Similarity=0.248 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCceecCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeE
Q 044773 146 ISENKKRLKQRHRKLVSGLEKAGISCLKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWF 225 (289)
Q Consensus 146 ~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~ 225 (289)
++++.+.+....-.|...|+..|-++.... ||=.+++.-... ..++....+ +.+|-++- .+++.+
T Consensus 393 L~~IArrvh~~T~~l~~~l~~aghel~~k~--fFDTLkI~~~~s------~~~~l~rA~-~~~iNlr~------~ed~ti 457 (1001)
T KOG2040|consen 393 LKEIARRVHNLTLILAEGLKNAGHELQHKP--FFDTLKIRCGCS------AEEVLDRAA-KRQINLRL------VEDGTI 457 (1001)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcchhhcccc--ccceEEEEecCc------HHHHHHHHH-hhcCceEE------eecCce
Confidence 566666777777778888887775554433 554444432211 134555544 33455442 346778
Q ss_pred EEEEec-CCHHHHHHHHHHHH
Q 044773 226 RVCFAN-MSEDTLKLSMQRLK 245 (289)
Q Consensus 226 Ris~~~-~~~e~l~~~l~~l~ 245 (289)
=+++-. .+.++++.++..+.
T Consensus 458 gvslDETv~~~DvddLl~vf~ 478 (1001)
T KOG2040|consen 458 GVSLDETVTEKDVDDLLWVFN 478 (1001)
T ss_pred EEeecccccHHHHHHHHHHHc
Confidence 888843 68899999988775
No 400
>PLN03244 alpha-amylase; Provisional
Probab=51.93 E-value=27 Score=34.97 Aligned_cols=37 Identities=11% Similarity=0.020 Sum_probs=30.5
Q ss_pred CCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCcc
Q 044773 22 NPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVF 58 (289)
Q Consensus 22 NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~ 58 (289)
-|+-.--++++++++++.|++.|+-||.|=+|..+.-
T Consensus 432 ApssRYGTPeDLK~LVD~aH~~GI~VILDvV~NH~~~ 468 (872)
T PLN03244 432 AASSRYGTPDDFKRLVDEAHGLGLLVFLDIVHSYAAA 468 (872)
T ss_pred ccCcccCCHHHHHHHHHHHHHCCCEEEEEecCccCCC
Confidence 3444555689999999999999999999999986543
No 401
>TIGR02104 pulA_typeI pullulanase, type I. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family consists of pullulanases related to the subfamilies described in TIGR02102 and TIGR02103 but having a different domain architecture with shorter sequences. Members are called type I pullulanases.
Probab=47.49 E-value=23 Score=34.50 Aligned_cols=27 Identities=30% Similarity=0.507 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHcCCEEEEecCCCCC
Q 044773 30 RNELNLLVNFITEKNIHLISDEIYSGT 56 (289)
Q Consensus 30 ~~~l~~l~~~~~~~~~~li~Dea~~~~ 56 (289)
.++++++++-|++.|+.||+|-++.+.
T Consensus 228 ~~efk~lV~~~H~~Gi~VilDvV~NH~ 254 (605)
T TIGR02104 228 IRELKQMIQALHENGIRVIMDVVYNHT 254 (605)
T ss_pred HHHHHHHHHHHHHCCCEEEEEEEcCCc
Confidence 479999999999999999999999754
No 402
>PF00128 Alpha-amylase: Alpha amylase, catalytic domain; InterPro: IPR006047 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain, such as alpha-amylase, belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. The maltogenic alpha-amylase is an enzyme which catalyses hydrolysis of (1-4)-alpha-D-glucosidic linkages in polysaccharides so as to remove successive alpha-maltose residues from the non-reducing ends of the chains in the conversion of starch to maltose. Other enzymes include neopullulanase, which hydrolyses pullulan to panose, and cyclomaltodextrinase, which hydrolyses cyclodextrins. This entry represents the catalytic domain found in several protein members of this family. It has a structure consisting of an 8 stranded alpha/beta barrel that contains the active site, interrupted by a ~70 amino acid calcium-binding domain protruding between beta strand 3 and alpha helix 3, and a carboxyl-terminal Greek key beta-barrel domain []. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0003824 catalytic activity, 0043169 cation binding, 0005975 carbohydrate metabolic process; PDB: 3FAX_A 3FAW_A 2DH3_B 2DH2_A 1CIU_A 1A47_A 3BMW_A 3BMV_A 2FH8_A 2FH6_A ....
Probab=46.72 E-value=18 Score=31.20 Aligned_cols=29 Identities=21% Similarity=0.300 Sum_probs=25.9
Q ss_pred CHHHHHHHHHHHHHcCCEEEEecCCCCCc
Q 044773 29 SRNELNLLVNFITEKNIHLISDEIYSGTV 57 (289)
Q Consensus 29 ~~~~l~~l~~~~~~~~~~li~Dea~~~~~ 57 (289)
+.++++++++.|+++|+.||+|-+..+..
T Consensus 50 t~~d~~~Lv~~~h~~gi~VilD~V~NH~~ 78 (316)
T PF00128_consen 50 TMEDFKELVDAAHKRGIKVILDVVPNHTS 78 (316)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEEEETSEEE
T ss_pred hhhhhhhhhhccccccceEEEeeeccccc
Confidence 47899999999999999999999997543
No 403
>PF13872 AAA_34: P-loop containing NTP hydrolase pore-1
Probab=46.37 E-value=15 Score=32.24 Aligned_cols=27 Identities=26% Similarity=0.327 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHH-cCCEEEEecCCCCC
Q 044773 30 RNELNLLVNFITE-KNIHLISDEIYSGT 56 (289)
Q Consensus 30 ~~~l~~l~~~~~~-~~~~li~Dea~~~~ 56 (289)
..++++|++||.+ .+.+||.||+|..-
T Consensus 158 ~sRl~ql~~W~g~dfdgvivfDEcH~ak 185 (303)
T PF13872_consen 158 RSRLDQLVDWCGEDFDGVIVFDECHKAK 185 (303)
T ss_pred cchHHHHHHHHhcCCCceEEeccchhcC
Confidence 4579999999954 68899999999743
No 404
>PF02677 DUF208: Uncharacterized BCR, COG1636; InterPro: IPR003828 This entry describes proteins of unknown function.
Probab=45.12 E-value=48 Score=26.73 Aligned_cols=48 Identities=25% Similarity=0.436 Sum_probs=31.6
Q ss_pred HHHhhhCCCccEEEEeCCC-CCCccCCCHHHHHHHHHHHHHcCCEEEEecCCC
Q 044773 3 QLAQKRHLKVKGVLVTNPS-NPLGTTMSRNELNLLVNFITEKNIHLISDEIYS 54 (289)
Q Consensus 3 ~~~~~~~~~~~~i~l~~p~-NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~ 54 (289)
+.+....-++.+ +.-||| .|..-- ..+++++.++|++.++.+|+++ |.
T Consensus 16 ~~L~~~g~~vt~-~fyNPNIhP~~Ey--~~R~~~~~~~~~~~~i~~i~~~-Y~ 64 (176)
T PF02677_consen 16 ERLREEGFDVTG-YFYNPNIHPYEEY--ERRLEELKRFAEKLGIPLIEGD-YD 64 (176)
T ss_pred HHHHHCCCCeEE-EEeCCCCCcHHHH--HHHHHHHHHHHHHcCCCEEecC-CC
Confidence 444444334444 778886 453221 2267888999999999999999 64
No 405
>TIGR02402 trehalose_TreZ malto-oligosyltrehalose trehalohydrolase. Members of this family are the trehalose biosynthetic enzyme malto-oligosyltrehalose trehalohydrolase, formally known as 4-alpha-D-{(1-4)-alpha-D-glucano}trehalose trehalohydrolase (EC 3.2.1.141). It is the TreZ protein of the TreYZ pathway for trehalose biosynthesis, and alternative to the OtsAB system.
Probab=45.01 E-value=45 Score=32.08 Aligned_cols=31 Identities=19% Similarity=0.207 Sum_probs=27.0
Q ss_pred CCCHHHHHHHHHHHHHcCCEEEEecCCCCCc
Q 044773 27 TMSRNELNLLVNFITEKNIHLISDEIYSGTV 57 (289)
Q Consensus 27 ~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~ 57 (289)
.-+.++++++++.|+++|+.||.|-++.+..
T Consensus 156 ~G~~~e~k~lV~~aH~~Gi~VilD~V~NH~~ 186 (542)
T TIGR02402 156 YGGPDDLKALVDAAHGLGLGVILDVVYNHFG 186 (542)
T ss_pred cCCHHHHHHHHHHHHHCCCEEEEEEccCCCC
Confidence 3357899999999999999999999998653
No 406
>PF14097 SpoVAE: Stage V sporulation protein AE1
Probab=44.67 E-value=1.6e+02 Score=23.55 Aligned_cols=81 Identities=17% Similarity=0.158 Sum_probs=49.9
Q ss_pred CCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEecCccccCCCCc
Q 044773 20 PSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVYSLSKDLGLPGF 99 (289)
Q Consensus 20 p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~s~sK~~g~~G~ 99 (289)
-.||| .++-+++-+++.-+...-++++.||.=.. -.|.....+..+..+ ..-+.+-++--.|++.++.|.
T Consensus 32 ~GNPT--~lsG~elV~lIk~a~~DPV~VMfDD~G~~--g~G~GE~Al~~v~~h------~~IeVLG~iAVASnT~~~~g~ 101 (180)
T PF14097_consen 32 AGNPT--PLSGEELVELIKQAPHDPVLVMFDDKGFI--GEGPGEQALEYVANH------PDIEVLGAIAVASNTHGAEGT 101 (180)
T ss_pred CCCCC--cCCHHHHHHHHHhCCCCCEEEEEeCCCCC--CCCccHHHHHHHHcC------CCceEEEEEEEEecCCCCCce
Confidence 37998 56666666666666555799999997542 113433445555442 122333345667888888898
Q ss_pred eEEEEEecCHH
Q 044773 100 RVGAIYSNDDT 110 (289)
Q Consensus 100 r~G~i~~~~~~ 110 (289)
++-+-+-++..
T Consensus 102 ~VD~sidr~G~ 112 (180)
T PF14097_consen 102 KVDVSIDRDGE 112 (180)
T ss_pred EeEEEEcCCCe
Confidence 88887765433
No 407
>COG1377 FlhB Flagellar biosynthesis pathway, component FlhB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=44.29 E-value=31 Score=31.19 Aligned_cols=49 Identities=14% Similarity=0.148 Sum_probs=33.9
Q ss_pred HHhhhCCCccEEEEeCC-CCCCccCCCHHH--------------HHHHHHHHHHcCCEEEEecCC
Q 044773 4 LAQKRHLKVKGVLVTNP-SNPLGTTMSRNE--------------LNLLVNFITEKNIHLISDEIY 53 (289)
Q Consensus 4 ~~~~~~~~~~~i~l~~p-~NPtG~~~~~~~--------------l~~l~~~~~~~~~~li~Dea~ 53 (289)
+....-|+.++ +++|| |.--+.-+.++. =-+|.++|++||+.+++|=.-
T Consensus 255 rm~~~Vp~Adv-VItNPTH~AVAlkY~~~~~~AP~VvAKG~d~~AlkIreiA~e~~Ipi~enppL 318 (363)
T COG1377 255 RMMSDVPKADV-VITNPTHYAVALKYDPEKMPAPVVVAKGVDLVALKIREIAKEHGIPIIENPPL 318 (363)
T ss_pred HHHhhCCCCCE-EeeCcCceeeeeeeccccCCCCEEEEeCCcHHHHHHHHHHHHcCCceecChHH
Confidence 33444566776 78888 554455555442 257889999999999999664
No 408
>PRK02308 uvsE putative UV damage endonuclease; Provisional
Probab=43.67 E-value=2.3e+02 Score=24.98 Aligned_cols=66 Identities=12% Similarity=0.163 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHHHHHHH---hcCCceecCCceEEEEEecCcc--c-cCCChhhHHHHHHHHHHhcCeEE
Q 044773 146 ISENKKRLKQRHRKLVSGLE---KAGISCLKSNAGLFCWVDMRHL--L-SSNTFEAEMELWKKIVYDVKLNI 211 (289)
Q Consensus 146 ~~~~~~~~~~~~~~l~~~l~---~~g~~~~~~~~g~~~~i~~~~~--~-~~~~~~~~~~~~~~ll~~~gi~v 211 (289)
.+++.+....+.+.+...|+ +.++.++.-++.++-+..-++. + ......+..+.+..+++++|+.+
T Consensus 36 ~~~l~~~~~~Nl~~l~~~l~~~~~~~I~~~R~sS~l~P~~~h~~~~~w~~~~~~~~~~~~~g~~~~~~~irl 107 (303)
T PRK02308 36 EEKLEEIALSNLENLLRILKYNIAHGIGLFRLSSSLIPLATHPELEGWDYIEPFKEELREIGEFIKEHNIRL 107 (303)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEcccCcCCCCCChhhcccCCCCCCHHHHHHHHHHHHHcCCCe
Confidence 45556666666666666663 4477777666655554433321 1 12222344556666677778743
No 409
>PLN02672 methionine S-methyltransferase
Probab=41.40 E-value=2.2e+02 Score=30.03 Aligned_cols=106 Identities=19% Similarity=0.169 Sum_probs=69.8
Q ss_pred HHHhhhCCCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCC
Q 044773 3 QLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWN 82 (289)
Q Consensus 3 ~~~~~~~~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 82 (289)
.+++++- ++++|+..-.. +...+-...+.|++.+++-|+.++.|.+-..-.-..+....+.+++.. +-..-
T Consensus 520 ~~~~~~~-~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~ 590 (1082)
T PLN02672 520 IELIKKL-KPQVVVTGMAD---FEMRTSTAFEHLLNVTAEIGARLFLDISDHLELSSLPGSNGVLKYLAG-----HPLPS 590 (1082)
T ss_pred HHHHHhC-CCeEEEEeccc---hhhhhHHHHHHHHHHHHhhCcEEEEehhhheeeccCCCcccHHHHhcC-----CCCCc
Confidence 3555555 77876665443 445566679999999999999999999854211113333445555432 12344
Q ss_pred ceEEEecCccccCCCCceEEEEEecCHHHHHHHHh
Q 044773 83 RVHIVYSLSKDLGLPGFRVGAIYSNDDTVVAAATK 117 (289)
Q Consensus 83 ~~i~i~s~sK~~g~~G~r~G~i~~~~~~~~~~~~~ 117 (289)
+..++.++-|---.+.+-+++++.-++.+.+.+.+
T Consensus 591 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 625 (1082)
T PLN02672 591 HAAIICGLVKNQVYSDLEVAFVISENEAVLKALSK 625 (1082)
T ss_pred chhHhhhhhhccccccceEEEEecCcHHHHHHHHH
Confidence 55667778787666999999999877766655443
No 410
>PF07745 Glyco_hydro_53: Glycosyl hydrolase family 53; InterPro: IPR011683 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain is found in family 53 of the glycosyl hydrolase classification []. These enzymes are endo-1,4- beta-galactanases (3.2.1.89 from EC). The structure of this domain is known [] and has a TIM barrel fold.; GO: 0015926 glucosidase activity; PDB: 1HJQ_A 1HJS_A 1HJU_B 1FHL_A 1FOB_A 2GFT_A 1UR4_B 1UR0_A 1R8L_B 2CCR_A ....
Probab=40.51 E-value=75 Score=28.47 Aligned_cols=46 Identities=17% Similarity=0.150 Sum_probs=33.1
Q ss_pred ccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccC
Q 044773 12 VKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFS 59 (289)
Q Consensus 12 ~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~ 59 (289)
+|+=+.++|.+ |-..+.++..++++-+++.|..|++|--|++..-+
T Consensus 41 vRlRvwv~P~~--~g~~~~~~~~~~akrak~~Gm~vlldfHYSD~WaD 86 (332)
T PF07745_consen 41 VRLRVWVNPYD--GGYNDLEDVIALAKRAKAAGMKVLLDFHYSDFWAD 86 (332)
T ss_dssp EEEEE-SS-TT--TTTTSHHHHHHHHHHHHHTT-EEEEEE-SSSS--B
T ss_pred EEEEeccCCcc--cccCCHHHHHHHHHHHHHCCCeEEEeecccCCCCC
Confidence 45557888866 45689889999999999999999999999987443
No 411
>PF02844 GARS_N: Phosphoribosylglycinamide synthetase, N domain; InterPro: IPR020562 Phosphoribosylglycinamide synthetase (6.3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) [] catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by phosphoribosylglycinamide synthetase is the ATP-dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide: ATP + 5-phosphoribosylamine + glycine = ADP + Pi + 5'-phosphoribosylglycinamide In bacteria, GARS is a monofunctional enzyme (encoded by the purD gene). In yeast, GARS is part of a bifunctional enzyme (encoded by the ADE5/7 gene) in conjunction with phosphoribosylformylglycinamidine cyclo-ligase (AIRS) (IPR000728 from INTERPRO). In higher eukaryotes, GARS is part of a trifunctional enzyme in conjunction with AIRS (IPR000728 from INTERPRO) and with phosphoribosylglycinamide formyltransferase (GART) (), forming GARS-AIRS-GART. This entry represents the N-domain, which is related to the N-terminal domain of biotin carboxylase/carbamoyl phosphate synthetase (IPR005481 from INTERPRO).; GO: 0004637 phosphoribosylamine-glycine ligase activity, 0009113 purine base biosynthetic process; PDB: 3MJF_A 2XD4_A 2XCL_A 2IP4_A 2YW2_B 2YYA_A 3LP8_A 1VKZ_A 2YS6_A 2YRX_A ....
Probab=40.02 E-value=37 Score=24.62 Aligned_cols=45 Identities=20% Similarity=0.327 Sum_probs=25.6
Q ss_pred HHHhhhCCCccEEEEeCCCCCCcc------CCCHHHHHHHHHHHHHcCCEEE
Q 044773 3 QLAQKRHLKVKGVLVTNPSNPLGT------TMSRNELNLLVNFITEKNIHLI 48 (289)
Q Consensus 3 ~~~~~~~~~~~~i~l~~p~NPtG~------~~~~~~l~~l~~~~~~~~~~li 48 (289)
-..+.+.+...- +++.|.||.=. ..+..+.+.|+++|+++++-++
T Consensus 16 a~~l~~s~~v~~-v~~aPGN~G~~~~~~~~~~~~~d~~~l~~~a~~~~idlv 66 (100)
T PF02844_consen 16 AWKLSQSPSVEE-VYVAPGNPGTAELGKNVPIDITDPEELADFAKENKIDLV 66 (100)
T ss_dssp HHHHTTCTTEEE-EEEEE--TTGGGTSEEE-S-TT-HHHHHHHHHHTTESEE
T ss_pred HHHHhcCCCCCE-EEEeCCCHHHHhhceecCCCCCCHHHHHHHHHHcCCCEE
Confidence 345566655554 45557776311 1257789999999999875444
No 412
>cd06568 GH20_SpHex_like A subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the N-acetylhexosaminidase from Streptomyces plicatus (SpHex). SpHex catalyzes the hydrolysis of N-acetyl-beta-hexosaminides. An Asp residue within the active site plays a critical role in substrate-assisted catalysis by orienting the 2-acetamido group and stabilizing the transition state. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself. Proteins belonging to this subgroup lack the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases.
Probab=39.53 E-value=40 Score=30.11 Aligned_cols=27 Identities=15% Similarity=0.374 Sum_probs=23.6
Q ss_pred CCccCCCHHHHHHHHHHHHHcCCEEEE
Q 044773 23 PLGTTMSRNELNLLVNFITEKNIHLIS 49 (289)
Q Consensus 23 PtG~~~~~~~l~~l~~~~~~~~~~li~ 49 (289)
+.|-.++.+++++|++.|++.++-||-
T Consensus 67 ~~~~~YT~~di~elv~yA~~rgI~vIP 93 (329)
T cd06568 67 GPGGYYTQEDYKDIVAYAAERHITVVP 93 (329)
T ss_pred CCCCcCCHHHHHHHHHHHHHcCCEEEE
Confidence 446679999999999999999988875
No 413
>KOG2741 consensus Dimeric dihydrodiol dehydrogenase [Carbohydrate transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]
Probab=39.52 E-value=86 Score=28.15 Aligned_cols=50 Identities=18% Similarity=0.299 Sum_probs=34.1
Q ss_pred hHHHhhhCCCccEEEEeCCCCCC-------------------ccCCCHHHHHHHHHHHHHcCCEEEEecCCC
Q 044773 2 YQLAQKRHLKVKGVLVTNPSNPL-------------------GTTMSRNELNLLVNFITEKNIHLISDEIYS 54 (289)
Q Consensus 2 l~~~~~~~~~~~~i~l~~p~NPt-------------------G~~~~~~~l~~l~~~~~~~~~~li~Dea~~ 54 (289)
+|++++ ++.+.+||+..|| |+ =..++.++.++|++.|++++ +.+.|..|.
T Consensus 64 yEeLak-d~~vDvVyi~~~~-~qH~evv~l~l~~~K~VL~EKPla~n~~e~~~iveaA~~rg-v~~meg~~~ 132 (351)
T KOG2741|consen 64 YEELAK-DPEVDVVYISTPN-PQHYEVVMLALNKGKHVLCEKPLAMNVAEAEEIVEAAEARG-VFFMEGLWW 132 (351)
T ss_pred HHHHhc-CCCcCEEEeCCCC-ccHHHHHHHHHHcCCcEEecccccCCHHHHHHHHHHHHHcC-cEEEeeeee
Confidence 455554 4578888887763 22 12468889999999999988 445555554
No 414
>TIGR00629 uvde UV damage endonuclease UvdE. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=38.66 E-value=2.8e+02 Score=24.61 Aligned_cols=96 Identities=14% Similarity=0.196 Sum_probs=54.6
Q ss_pred HHHHHHHHHHHHHHHHHHHH---hcCCceecCCceEEEEEecCcc-cc-CCChhhHHHHHHHHHHhcCeEEe--CCCCCC
Q 044773 146 ISENKKRLKQRHRKLVSGLE---KAGISCLKSNAGLFCWVDMRHL-LS-SNTFEAEMELWKKIVYDVKLNIS--PGSSCH 218 (289)
Q Consensus 146 ~~~~~~~~~~~~~~l~~~l~---~~g~~~~~~~~g~~~~i~~~~~-~~-~~~~~~~~~~~~~ll~~~gi~v~--pg~~f~ 218 (289)
.+++.+....+.+.+...|+ +.|+.++.-++.++-+..-+.. .+ ...+.+..+.+..+.++.||.+. |+
T Consensus 40 ~~~l~~l~~~Nl~~l~~~L~~n~~~~I~f~RisS~l~P~ash~~~~~~~~~~~~~~l~~iG~~a~~~~iRLS~Hp~---- 115 (312)
T TIGR00629 40 KEAVLTLGKANLRDTMKTLHWNIGHGIPFYRFSSSIFPFASHPDVGYDLVTFAQKELREIGELAKTHQHRLTFHPG---- 115 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCcEEecCccccCcCcCchhhhhHHHHHHHHHHHHHHHHHHcCeEEEECCC----
Confidence 35566666666666666664 4478777666655544433321 00 01122334455666778888764 32
Q ss_pred CCCCCeEEEEEecCCHHHHHHHHHHHHHHHHHH
Q 044773 219 CTEPGWFRVCFANMSEDTLKLSMQRLKAFVDSI 251 (289)
Q Consensus 219 ~~~~~~~Ris~~~~~~e~l~~~l~~l~~~l~~~ 251 (289)
.| +.++...++.++..++.|..-.+-.
T Consensus 116 ----qf--i~LnS~~~evv~~Si~~L~~ha~~l 142 (312)
T TIGR00629 116 ----QF--TQFTSPRESVVKSAIRDLAYHDEML 142 (312)
T ss_pred ----cc--ccCCCCCHHHHHHHHHHHHHHHHHH
Confidence 22 2343357888999988887665553
No 415
>PF08672 APC2: Anaphase promoting complex (APC) subunit 2; InterPro: IPR014786 The anaphase-promoting complex (APC) or cyclosome is a multi-subunit E3 protein ubiquitin ligase that regulates important events in mitosis such as the initiation of anaphase and exit from telophase. The APC, in conjunction with other enzymes, assembles multi-ubiquitin chains on a variety of regulatory proteins, thereby targeting them for proteolysis by the 26S proteasome. Anaphase is initiated when the APC triggers the destruction of securin, thereby allowing the protease, separase, to disrupt sister-chromatid cohesion. Securin ubiquitination by the APC is inhibited by cyclin-dependent kinase 1 (Cdk1)-dependent phosphorylation []. Forkhead Box M1 (FoxM1), which is a transcription factor that is over-expressed in many cancers, is degraded in late mitosis and early G1 phase by the APC/cyclosome (APC/C) E3 ubiquitin ligase []. The APC/C targets mitotic cyclins for destruction in mitosis and G1 phase and is then inactivated at S phase. It thereby generates alternating states of high and low cyclin-Cdk activity, which is required for the alternation of mitosis and DNA replication []. The APC/C is composed of at least 13 subunits that stay tightly associated throughout the cell cycle: APC1, APC2, APC4, APC5, APC9, APC11, CDC16, CDC23, CDC26, CDC27, DOC1, MND2 and SWM1[], []. In fission yeast the 13 subunits are known as: Apc1, Apc2, Nuc2, Apc4, Apc5, Cut9, Apc8, Apc10, Apc11, Hcn1, Apc13, Apc14 and Apc15 []. This entry represents a C-terminal domain found in APC subunit 2. ; PDB: 1LDD_A.
Probab=38.28 E-value=32 Score=22.33 Aligned_cols=34 Identities=26% Similarity=0.365 Sum_probs=21.7
Q ss_pred CCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCC
Q 044773 20 PSNPLGTTMSRNELNLLVNFITEKNIHLISDEIY 53 (289)
Q Consensus 20 p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~ 53 (289)
|..|.+..++.++++++++-..+.+.+.+.+..|
T Consensus 25 ~~~~~~~~~s~~eL~~fL~~lv~e~~L~~~~G~Y 58 (60)
T PF08672_consen 25 PKDPGGYDISLEELQEFLDRLVEEGKLECSGGSY 58 (60)
T ss_dssp -GGG--TT--HHHHHHHHHHHHHTTSEE--TTEE
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHCCcEEecCCEE
Confidence 3456788899999999999888888777776665
No 416
>PRK09441 cytoplasmic alpha-amylase; Reviewed
Probab=37.43 E-value=43 Score=31.58 Aligned_cols=29 Identities=17% Similarity=0.326 Sum_probs=25.7
Q ss_pred CHHHHHHHHHHHHHcCCEEEEecCCCCCc
Q 044773 29 SRNELNLLVNFITEKNIHLISDEIYSGTV 57 (289)
Q Consensus 29 ~~~~l~~l~~~~~~~~~~li~Dea~~~~~ 57 (289)
+.+++++|++.|+++|+.||+|-+.-+..
T Consensus 79 t~~dl~~Li~~~H~~Gi~vi~D~V~NH~~ 107 (479)
T PRK09441 79 TKEELLNAIDALHENGIKVYADVVLNHKA 107 (479)
T ss_pred CHHHHHHHHHHHHHCCCEEEEEECccccc
Confidence 57799999999999999999999986653
No 417
>cd01831 Endoglucanase_E_like Endoglucanase E-like members of the SGNH hydrolase family; Endoglucanase E catalyzes the endohydrolysis of 1,4-beta-glucosidic linkages in cellulose, lichenin and cereal beta-D-glucans.
Probab=37.08 E-value=1.2e+02 Score=23.63 Aligned_cols=48 Identities=15% Similarity=0.024 Sum_probs=26.7
Q ss_pred hHHHhhhCCCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcC--CEEEEe
Q 044773 2 YQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKN--IHLISD 50 (289)
Q Consensus 2 l~~~~~~~~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~--~~li~D 50 (289)
++++.+++|+++++++..|-++... ...+.++.+.+++++.+ -+.++|
T Consensus 87 i~~i~~~~p~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~v~~id 136 (169)
T cd01831 87 IEELRKRYPDAPIVLMLGPMLFGPY-GTEEEIKRVAEAFKDQKSKKVHYFD 136 (169)
T ss_pred HHHHHHHCCCCeEEEEecCcccccc-ccHHHHHHHHHHHHhcCCceEEEEe
Confidence 3455566677777666655433221 11456677777777764 244444
No 418
>COG3867 Arabinogalactan endo-1,4-beta-galactosidase [Carbohydrate transport and metabolism]
Probab=36.64 E-value=88 Score=27.58 Aligned_cols=48 Identities=21% Similarity=0.214 Sum_probs=33.2
Q ss_pred ccEEEEeCC--CCCCccCCCHHHHHHHHHHH---HHcCCEEEEecCCCCCccC
Q 044773 12 VKGVLVTNP--SNPLGTTMSRNELNLLVNFI---TEKNIHLISDEIYSGTVFS 59 (289)
Q Consensus 12 ~~~i~l~~p--~NPtG~~~~~~~l~~l~~~~---~~~~~~li~Dea~~~~~~~ 59 (289)
+|+-+.++| +|-.|----..+++..++++ +..|..|+.|--|+++.-+
T Consensus 80 vRlRvwndP~dsngn~yggGnnD~~k~ieiakRAk~~GmKVl~dFHYSDfwaD 132 (403)
T COG3867 80 VRLRVWNDPYDSNGNGYGGGNNDLKKAIEIAKRAKNLGMKVLLDFHYSDFWAD 132 (403)
T ss_pred EEEEEecCCccCCCCccCCCcchHHHHHHHHHHHHhcCcEEEeeccchhhccC
Confidence 677799999 44444434444566555555 5569999999999998544
No 419
>PF10609 ParA: ParA/MinD ATPase like; InterPro: IPR019591 This entry represents ATPases involved in plasmid partitioning []. It also contains cytosolic Fe-S cluster assembling factors, NBP35 and CFD1 which are required for biogenesis and export of both ribosomal subunits probably through assembling the ISCs in RLI1, a protein which performs rRNA processing and ribosome export [, , ].; PDB: 2PH1_A 3KB1_B.
Probab=36.57 E-value=84 Score=21.79 Aligned_cols=33 Identities=12% Similarity=0.359 Sum_probs=23.4
Q ss_pred CccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEE
Q 044773 11 KVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLI 48 (289)
Q Consensus 11 ~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li 48 (289)
...+|++++|+. ++..+..+-++++++.++.++
T Consensus 25 ~~g~ivVTTPq~-----la~~dv~r~~~~~~~~~vpil 57 (81)
T PF10609_consen 25 IDGAIVVTTPQE-----LALADVRRAIDMFRKLNVPIL 57 (81)
T ss_dssp -SEEEEEE-CCC-------HHHHHHHHHHHHCTT-EEE
T ss_pred CCeEEEEeCCHH-----HHHHHHHHHHHHHHhcCCCcE
Confidence 457889998876 577789999999999887653
No 420
>COG4050 Uncharacterized protein conserved in archaea [Function unknown]
Probab=36.30 E-value=1.1e+02 Score=22.77 Aligned_cols=29 Identities=14% Similarity=0.295 Sum_probs=24.3
Q ss_pred eEEEEEecCCHHHHHHHHHHHHHHHHHHHH
Q 044773 224 WFRVCFANMSEDTLKLSMQRLKAFVDSITT 253 (289)
Q Consensus 224 ~~Ris~~~~~~e~l~~~l~~l~~~l~~~~~ 253 (289)
.+++-+.. ++|+-...+..+..+++++..
T Consensus 121 iLelkYP~-s~Eea~~~VnkI~~FL~sLe~ 149 (152)
T COG4050 121 ILELKYPR-SEEEAIDFVNKIANFLKSLEA 149 (152)
T ss_pred eEEEeCCC-cHHHHHHHHHHHHHHHHhhhh
Confidence 46777774 889999999999999998875
No 421
>cd06563 GH20_chitobiase-like The chitobiase of Serratia marcescens is a beta-N-1,4-acetylhexosaminidase with a glycosyl hydrolase family 20 (GH20) domain that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. This GH20 domain family includes an N-acetylglucosamidase (GlcNAcase A) from Pseudoalteromonas piscicida and an N-acetylhexosaminidase (SpHex) from Streptomyces plicatus. SpHex lacks the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=36.23 E-value=41 Score=30.36 Aligned_cols=28 Identities=25% Similarity=0.579 Sum_probs=24.2
Q ss_pred CCccCCCHHHHHHHHHHHHHcCCEEEEe
Q 044773 23 PLGTTMSRNELNLLVNFITEKNIHLISD 50 (289)
Q Consensus 23 PtG~~~~~~~l~~l~~~~~~~~~~li~D 50 (289)
|.|-.++.+++++|++.|+++|+-||--
T Consensus 78 ~~~~~YT~~di~eiv~yA~~rgI~VIPE 105 (357)
T cd06563 78 PYGGFYTQEEIREIVAYAAERGITVIPE 105 (357)
T ss_pred ccCceECHHHHHHHHHHHHHcCCEEEEe
Confidence 4467899999999999999999988754
No 422
>PRK00109 Holliday junction resolvase-like protein; Reviewed
Probab=36.21 E-value=1.6e+02 Score=22.60 Aligned_cols=52 Identities=23% Similarity=0.160 Sum_probs=30.5
Q ss_pred HHHhhhCCCccEEEEeCCCCCCccCCCHH-HHHHHHHHHHH-c-CCEEEEecCCCC
Q 044773 3 QLAQKRHLKVKGVLVTNPSNPLGTTMSRN-ELNLLVNFITE-K-NIHLISDEIYSG 55 (289)
Q Consensus 3 ~~~~~~~~~~~~i~l~~p~NPtG~~~~~~-~l~~l~~~~~~-~-~~~li~Dea~~~ 55 (289)
.+..+.. ++..|++--|-|+.|..-+.. ..+++++..++ + --+.++||.|+.
T Consensus 47 ~~~i~~~-~i~~iVvGlP~~~~G~~~~~~~~v~~f~~~L~~~~~~~v~~~DEr~TT 101 (138)
T PRK00109 47 EKLIKEW-QPDGLVVGLPLNMDGTEGPRTERARKFANRLEGRFGLPVVLVDERLST 101 (138)
T ss_pred HHHHHHh-CCCEEEEeccCCCCCCcCHHHHHHHHHHHHHHHHhCCCEEEEcCCcCH
Confidence 3444554 677788888877777753322 33444444433 2 345677888874
No 423
>PF03460 NIR_SIR_ferr: Nitrite/Sulfite reductase ferredoxin-like half domain; InterPro: IPR005117 Sulphite reductases (SiRs) and related nitrite reductases (NiRs) catalyse the six-electron reduction reactions of sulphite to sulphide, and nitrite to ammonia, respectively. The Escherichia coli SiR enzyme is a complex composed of two proteins, a flavoprotein alpha-component (SiR-FP) and a hemoprotein beta-component (SiR-HP), and has an alpha(8)beta(4) quaternary structure []. SiR-FP contains both FAD and FMN, while SiR-HP contains a Fe(4)S(4) cluster coupled to a sirohaem through a cysteine bridge. Electrons are transferred from NADPH to FAD, and on to FMN in SiR-FP, from which they are transferred to the metal centre of SiR-HP, where they reduce the siroheme-bound sulphite. SiR-HP has a two-fold symmetry, which generates a distinctive three-domain alpha/beta fold that controls assembly and reactivity []. This entry describes the ferrodoxin-like (alpha/beta sandwich) domain, which consists of a duplication containing two subdomains of this fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3B0H_A 4GEP_A 2GEP_A 2AOP_A 5AOP_A 6GEP_A 4AOP_A 1AOP_A 3AOP_A 8GEP_A ....
Probab=36.07 E-value=27 Score=22.87 Aligned_cols=28 Identities=18% Similarity=0.162 Sum_probs=21.6
Q ss_pred EeCCCCCCccCCCHHHHHHHHHHHHHcCC
Q 044773 17 VTNPSNPLGTTMSRNELNLLVNFITEKNI 45 (289)
Q Consensus 17 l~~p~NPtG~~~~~~~l~~l~~~~~~~~~ 45 (289)
...+.-|.|.+ +.+.+..|++++++|+.
T Consensus 11 ~v~~~~~~G~i-~~~~l~~la~ia~~yg~ 38 (69)
T PF03460_consen 11 MVRIRIPGGRI-SAEQLRALAEIAEKYGD 38 (69)
T ss_dssp EEEEB-GGGEE-EHHHHHHHHHHHHHHST
T ss_pred EEEEeCCCEEE-CHHHHHHHHHHHHHhCC
Confidence 33345567887 99999999999999874
No 424
>PRK12313 glycogen branching enzyme; Provisional
Probab=35.98 E-value=61 Score=31.84 Aligned_cols=32 Identities=16% Similarity=0.135 Sum_probs=27.4
Q ss_pred cCCCHHHHHHHHHHHHHcCCEEEEecCCCCCc
Q 044773 26 TTMSRNELNLLVNFITEKNIHLISDEIYSGTV 57 (289)
Q Consensus 26 ~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~ 57 (289)
..-+.++++++++.|+++|+.||.|-++....
T Consensus 215 ~~Gt~~d~k~lv~~~H~~Gi~VilD~V~nH~~ 246 (633)
T PRK12313 215 RYGTPEDFMYLVDALHQNGIGVILDWVPGHFP 246 (633)
T ss_pred CCCCHHHHHHHHHHHHHCCCEEEEEECCCCCC
Confidence 34467899999999999999999999987653
No 425
>PF14258 DUF4350: Domain of unknown function (DUF4350)
Probab=35.78 E-value=95 Score=20.29 Aligned_cols=34 Identities=21% Similarity=0.364 Sum_probs=23.1
Q ss_pred cEEEEeCCCCCCccCCC-HHHHHHHHHHHHHcCCEEEEe
Q 044773 13 KGVLVTNPSNPLGTTMS-RNELNLLVNFITEKNIHLISD 50 (289)
Q Consensus 13 ~~i~l~~p~NPtG~~~~-~~~l~~l~~~~~~~~~~li~D 50 (289)
..+++.+|... ++ .+++++|.++..+=|-++|+|
T Consensus 36 ~tll~i~~~~~----~~~~~~~~~l~~~v~~G~~lvl~a 70 (70)
T PF14258_consen 36 GTLLVIGPDLR----LSEPEEAEALLEWVEAGNTLVLAA 70 (70)
T ss_pred CEEEEEeCCCC----CCchHHHHHHHHHHHcCCEEEEeC
Confidence 34566666422 45 488999999998777777664
No 426
>cd02742 GH20_hexosaminidase Beta-N-acetylhexosaminidases of glycosyl hydrolase family 20 (GH20) catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. These enzymes are broadly distributed in microorganisms, plants and animals, and play roles in various key physiological and pathological processes. These processes include cell structural integrity, energy storage, cellular signaling, fertilization, pathogen defense, viral penetration, the development of carcinomas, inflammatory events and lysosomal storage disorders. The GH20 enzymes include the eukaryotic beta-N-acetylhexosaminidases A and B, the bacterial chitobiases, dispersin B, and lacto-N-biosidase. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by the solvent or the enzyme, but by the substrate itself.
Probab=34.80 E-value=46 Score=29.24 Aligned_cols=26 Identities=15% Similarity=0.362 Sum_probs=22.9
Q ss_pred CccCCCHHHHHHHHHHHHHcCCEEEE
Q 044773 24 LGTTMSRNELNLLVNFITEKNIHLIS 49 (289)
Q Consensus 24 tG~~~~~~~l~~l~~~~~~~~~~li~ 49 (289)
.|-.++++++++|++.|++.|+-||-
T Consensus 65 ~~~~yT~~di~elv~yA~~rgI~viP 90 (303)
T cd02742 65 PGGFYTYAQLKDIIEYAAARGIEVIP 90 (303)
T ss_pred CCCeECHHHHHHHHHHHHHcCCEEEE
Confidence 35579999999999999999988874
No 427
>COG0352 ThiE Thiamine monophosphate synthase [Coenzyme metabolism]
Probab=34.79 E-value=89 Score=25.99 Aligned_cols=100 Identities=14% Similarity=0.097 Sum_probs=53.8
Q ss_pred hHHHhhhCCCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccC-CCCccChhhhhhccccccCCC
Q 044773 2 YQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFS-SPGFVSIMEILKDRNCENTEV 80 (289)
Q Consensus 2 l~~~~~~~~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~-~~~~~~~~~~~~~~~~~~~d~ 80 (289)
+|++++- +++++-+=.-+..+-.. .+..+++.++|++|++.+|++|-+. +... +..... +
T Consensus 27 ve~al~~--Gv~~vQlR~K~~~~~~~--~~~a~~~~~lc~~~~v~liINd~~d-lA~~~~AdGVH---l----------- 87 (211)
T COG0352 27 VEAALKG--GVTAVQLREKDLSDEEY--LALAEKLRALCQKYGVPLIINDRVD-LALAVGADGVH---L----------- 87 (211)
T ss_pred HHHHHhC--CCeEEEEecCCCChHHH--HHHHHHHHHHHHHhCCeEEecCcHH-HHHhCCCCEEE---c-----------
Confidence 3445542 45665554443332221 4556899999999999999988764 2111 111111 0
Q ss_pred CCceEEEecCccccCCCCceEEEEEecCHHHHHHHHhcccc
Q 044773 81 WNRVHIVYSLSKDLGLPGFRVGAIYSNDDTVVAAATKMSSF 121 (289)
Q Consensus 81 ~~~~i~i~s~sK~~g~~G~r~G~i~~~~~~~~~~~~~~~~~ 121 (289)
...+.-+....|.++ +++.+|+=+-+.+.+....+....|
T Consensus 88 Gq~D~~~~~ar~~~~-~~~iIG~S~h~~eea~~A~~~g~DY 127 (211)
T COG0352 88 GQDDMPLAEARELLG-PGLIIGLSTHDLEEALEAEELGADY 127 (211)
T ss_pred CCcccchHHHHHhcC-CCCEEEeecCCHHHHHHHHhcCCCE
Confidence 011122334556776 8888888777444444444433444
No 428
>PHA02678 hypothetical protein; Provisional
Probab=34.67 E-value=54 Score=22.79 Aligned_cols=39 Identities=13% Similarity=0.197 Sum_probs=24.9
Q ss_pred hhCCCccEEEEeCCCCCCccCCCHHHHHHHHHHHHH----cCCEEEEecCCCCC
Q 044773 7 KRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNFITE----KNIHLISDEIYSGT 56 (289)
Q Consensus 7 ~~~~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~----~~~~li~Dea~~~~ 56 (289)
+...+.+.|++.||+ ..+|+..+.- -.+++++|-++.+.
T Consensus 42 ~I~~d~~svLLVNPT-----------~~qLl~~~~~~~~~~~~~~~~~~~~~~~ 84 (89)
T PHA02678 42 SVPRDARALLLVNPT-----------AGQLAAVAAGAPAGVRVLVLVDVARCDM 84 (89)
T ss_pred ccCcccceEEEECCC-----------HHHHHHhhcCCCCCcEEEEEEEeeeecC
Confidence 334568888998775 4445544433 25778889888753
No 429
>TIGR01515 branching_enzym alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase. A sequence from Arabidopsis thaliana, GP|9294564, scores just above trusted, but appears either to contain corrupt sequence or, more likely, to be a pseudogene as some of the conserved catalytic residues common to the alpha amylase family are not conserved here.
Probab=34.49 E-value=65 Score=31.52 Aligned_cols=32 Identities=13% Similarity=0.072 Sum_probs=27.5
Q ss_pred cCCCHHHHHHHHHHHHHcCCEEEEecCCCCCc
Q 044773 26 TTMSRNELNLLVNFITEKNIHLISDEIYSGTV 57 (289)
Q Consensus 26 ~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~ 57 (289)
..-+.++++++++.|++.|+.||.|-++....
T Consensus 201 ~~Gt~~dlk~lV~~~H~~Gi~VilD~V~NH~~ 232 (613)
T TIGR01515 201 RFGTPDDFMYFVDACHQAGIGVILDWVPGHFP 232 (613)
T ss_pred ccCCHHHHHHHHHHHHHCCCEEEEEecccCcC
Confidence 44467899999999999999999999987653
No 430
>cd01828 sialate_O-acetylesterase_like2 sialate_O-acetylesterase_like subfamily of the SGNH-hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=34.48 E-value=1.5e+02 Score=22.81 Aligned_cols=39 Identities=15% Similarity=0.266 Sum_probs=17.7
Q ss_pred CccEEEEeCCCCCCccCCCH----HHHHHHHHHHHH--cCCEEEE
Q 044773 11 KVKGVLVTNPSNPLGTTMSR----NELNLLVNFITE--KNIHLIS 49 (289)
Q Consensus 11 ~~~~i~l~~p~NPtG~~~~~----~~l~~l~~~~~~--~~~~li~ 49 (289)
++++|++.--.|=.+.-.+. +.++++++.+++ .++.||+
T Consensus 48 ~pd~vvl~~G~ND~~~~~~~~~~~~~l~~li~~~~~~~~~~~vi~ 92 (169)
T cd01828 48 QPKAIFIMIGINDLAQGTSDEDIVANYRTILEKLRKHFPNIKIVV 92 (169)
T ss_pred CCCEEEEEeeccCCCCCCCHHHHHHHHHHHHHHHHHHCCCCeEEE
Confidence 34555444443322222333 345566665555 4444444
No 431
>KOG2836 consensus Protein tyrosine phosphatase IVA1 [Signal transduction mechanisms]
Probab=33.83 E-value=83 Score=24.19 Aligned_cols=33 Identities=15% Similarity=0.318 Sum_probs=23.9
Q ss_pred CCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEe
Q 044773 10 LKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISD 50 (289)
Q Consensus 10 ~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~D 50 (289)
.+-+.++-.||+|-| +....+-.++||+..++-
T Consensus 15 ~~MrFLIThnPtnaT--------ln~fieELkKygvttvVR 47 (173)
T KOG2836|consen 15 KNMRFLITHNPTNAT--------LNKFIEELKKYGVTTVVR 47 (173)
T ss_pred cceEEEEecCCCchh--------HHHHHHHHHhcCCeEEEE
Confidence 356777777777765 777888888998766553
No 432
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=33.71 E-value=1.1e+02 Score=21.98 Aligned_cols=43 Identities=12% Similarity=0.213 Sum_probs=25.3
Q ss_pred hHHHhhhCCCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCC
Q 044773 2 YQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYS 54 (289)
Q Consensus 2 l~~~~~~~~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~ 54 (289)
+++++... ++.++++++|+.. -.+++..|-+.|..++++-...
T Consensus 54 ~~~ll~~~-~~D~V~I~tp~~~---------h~~~~~~~l~~g~~v~~EKP~~ 96 (120)
T PF01408_consen 54 LEELLADE-DVDAVIIATPPSS---------HAEIAKKALEAGKHVLVEKPLA 96 (120)
T ss_dssp HHHHHHHT-TESEEEEESSGGG---------HHHHHHHHHHTTSEEEEESSSS
T ss_pred HHHHHHhh-cCCEEEEecCCcc---------hHHHHHHHHHcCCEEEEEcCCc
Confidence 45666654 7888888887532 3344444445566666655443
No 433
>PRK05402 glycogen branching enzyme; Provisional
Probab=33.60 E-value=70 Score=32.03 Aligned_cols=34 Identities=15% Similarity=0.182 Sum_probs=28.5
Q ss_pred CCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCC
Q 044773 23 PLGTTMSRNELNLLVNFITEKNIHLISDEIYSGT 56 (289)
Q Consensus 23 PtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~ 56 (289)
|....-+.++++++++.|++.|+.||.|-++...
T Consensus 307 i~~~~Gt~~dfk~lV~~~H~~Gi~VilD~V~NH~ 340 (726)
T PRK05402 307 PTSRFGTPDDFRYFVDACHQAGIGVILDWVPAHF 340 (726)
T ss_pred cCcccCCHHHHHHHHHHHHHCCCEEEEEECCCCC
Confidence 3444457889999999999999999999998765
No 434
>PLN02960 alpha-amylase
Probab=33.51 E-value=71 Score=32.54 Aligned_cols=35 Identities=11% Similarity=0.023 Sum_probs=29.5
Q ss_pred CCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCc
Q 044773 23 PLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTV 57 (289)
Q Consensus 23 PtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~ 57 (289)
|++.--+.++++++++.|++.|+.||.|-++..+.
T Consensus 458 ~~~~yGtp~dfk~LVd~aH~~GI~VILDvV~NH~~ 492 (897)
T PLN02960 458 VSSRFGTPDDFKRLVDEAHGLGLLVFLDIVHSYAA 492 (897)
T ss_pred cccccCCHHHHHHHHHHHHHCCCEEEEEecccccC
Confidence 44455578899999999999999999999998653
No 435
>PRK03906 mannonate dehydratase; Provisional
Probab=32.88 E-value=1.1e+02 Score=28.02 Aligned_cols=40 Identities=13% Similarity=0.122 Sum_probs=33.7
Q ss_pred CCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEE
Q 044773 10 LKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLIS 49 (289)
Q Consensus 10 ~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~ 49 (289)
+++..|+..-++-|.|.+|+.+++.++.+.+.++|+.+=+
T Consensus 22 ~G~~~iv~~l~~~~~g~~W~~~~i~~~~~~ie~~Gl~~~v 61 (385)
T PRK03906 22 PGATGIVTALHDIPVGEVWPVEEILARKAEIEAAGLEWSV 61 (385)
T ss_pred CCCCceeecCCCCCCCCCCCHHHHHHHHHHHHHcCCeEEE
Confidence 5777777666678999999999999999999999876654
No 436
>cd06564 GH20_DspB_LnbB-like Glycosyl hydrolase family 20 (GH20) catalytic domain of dispersin B (DspB), lacto-N-biosidase (LnbB) and related proteins. Dispersin B is a soluble beta-N-acetylglucosamidase found in bacteria that hydrolyzes the beta-1,6-linkages of PGA (poly-beta-(1,6)-N-acetylglucosamine), a major component of the extracellular polysaccharide matrix. Lacto-N-biosidase hydrolyzes lacto-N-biose (LNB) type I oligosaccharides at the nonreducing terminus to produce lacto-N-biose as part of the GNB/LNB (galacto-N-biose/lacto-N-biose I) degradation pathway. The lacto-N-biosidase from Bifidobacterium bifidum has this GH20 domain, a carbohydrate binding module 32, and a bacterial immunoglobulin-like domain 2, as well as a YSIRK signal peptide and a G5 membrane anchor at the N and C termini, respectively. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=32.25 E-value=52 Score=29.24 Aligned_cols=27 Identities=11% Similarity=0.389 Sum_probs=23.3
Q ss_pred CCccCCCHHHHHHHHHHHHHcCCEEEE
Q 044773 23 PLGTTMSRNELNLLVNFITEKNIHLIS 49 (289)
Q Consensus 23 PtG~~~~~~~l~~l~~~~~~~~~~li~ 49 (289)
+.+-.++.+++++|++.|+++|+-||-
T Consensus 74 ~~~~~YT~~di~eiv~yA~~rgI~vIP 100 (326)
T cd06564 74 ANDGYYTKEEFKELIAYAKDRGVNIIP 100 (326)
T ss_pred CCCCcccHHHHHHHHHHHHHcCCeEec
Confidence 346679999999999999999988863
No 437
>PLN02447 1,4-alpha-glucan-branching enzyme
Probab=31.90 E-value=75 Score=31.90 Aligned_cols=29 Identities=14% Similarity=0.238 Sum_probs=26.3
Q ss_pred CCHHHHHHHHHHHHHcCCEEEEecCCCCC
Q 044773 28 MSRNELNLLVNFITEKNIHLISDEIYSGT 56 (289)
Q Consensus 28 ~~~~~l~~l~~~~~~~~~~li~Dea~~~~ 56 (289)
-+.++++++++.|+++|+.||.|-++...
T Consensus 297 Gtp~dlk~LVd~aH~~GI~VilDvV~nH~ 325 (758)
T PLN02447 297 GTPEDLKYLIDKAHSLGLRVLMDVVHSHA 325 (758)
T ss_pred CCHHHHHHHHHHHHHCCCEEEEEeccccc
Confidence 35789999999999999999999999865
No 438
>PLN00196 alpha-amylase; Provisional
Probab=31.85 E-value=59 Score=30.24 Aligned_cols=29 Identities=17% Similarity=0.340 Sum_probs=25.4
Q ss_pred CHHHHHHHHHHHHHcCCEEEEecCCCCCc
Q 044773 29 SRNELNLLVNFITEKNIHLISDEIYSGTV 57 (289)
Q Consensus 29 ~~~~l~~l~~~~~~~~~~li~Dea~~~~~ 57 (289)
+.++++++++.|+++|+.||.|-+..+..
T Consensus 90 t~~elk~Lv~~aH~~GIkVilDvV~NH~~ 118 (428)
T PLN00196 90 NEAQLKSLIEAFHGKGVQVIADIVINHRT 118 (428)
T ss_pred CHHHHHHHHHHHHHCCCEEEEEECccCcc
Confidence 56799999999999999999999976543
No 439
>PRK01018 50S ribosomal protein L30e; Reviewed
Probab=31.47 E-value=1.7e+02 Score=20.92 Aligned_cols=39 Identities=21% Similarity=0.134 Sum_probs=27.3
Q ss_pred HHHhhhCCCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEE
Q 044773 3 QLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLIS 49 (289)
Q Consensus 3 ~~~~~~~~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~ 49 (289)
.+++++. +.++|++.+ | .+++..+.+..+|.++++.++.
T Consensus 25 ~kai~~g-kaklViiA~--D-----~~~~~~~~i~~~c~~~~Ip~~~ 63 (99)
T PRK01018 25 IKAIKLG-KAKLVIVAS--N-----CPKDIKEDIEYYAKLSGIPVYE 63 (99)
T ss_pred HHHHHcC-CceEEEEeC--C-----CCHHHHHHHHHHHHHcCCCEEE
Confidence 3445544 788877773 2 4667789999999998887644
No 440
>PRK13602 putative ribosomal protein L7Ae-like; Provisional
Probab=31.32 E-value=1.8e+02 Score=20.05 Aligned_cols=40 Identities=23% Similarity=0.233 Sum_probs=28.1
Q ss_pred HHhhhCCCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEec
Q 044773 4 LAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDE 51 (289)
Q Consensus 4 ~~~~~~~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~De 51 (289)
+++++. +.+++++-+ | .++.-.+.+.++|+++++.++.-+
T Consensus 21 kai~~g-kaklViiA~--D-----~~~~~~~~i~~~c~~~~Vp~~~~~ 60 (82)
T PRK13602 21 KALKRG-SVKEVVVAE--D-----ADPRLTEKVEALANEKGVPVSKVD 60 (82)
T ss_pred HHHHcC-CeeEEEEEC--C-----CCHHHHHHHHHHHHHcCCCEEEEC
Confidence 445554 788877764 2 344568999999999998886544
No 441
>PF00150 Cellulase: Cellulase (glycosyl hydrolase family 5); InterPro: IPR001547 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 5 GH5 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); beta-mannanase (3.2.1.78 from EC); exo-1,3-glucanase (3.2.1.58 from EC); endo-1,6-glucanase (3.2.1.75 from EC); xylanase (3.2.1.8 from EC); endoglycoceramidase (3.2.1.123 from EC). The microbial degradation of cellulose and xylans requires several types of enzymes. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family A [] or as the glycosyl hydrolases family 5 []. One of the conserved regions in this family contains a conserved glutamic acid residue which is potentially involved [] in the catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3NDY_A 3NDZ_B 1LF1_A 1TVP_B 1TVN_A 3AYR_A 3AYS_A 1QI0_A 1W3K_A 1OCQ_A ....
Probab=30.53 E-value=55 Score=27.76 Aligned_cols=24 Identities=21% Similarity=0.177 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHcCCEEEEecCCC
Q 044773 31 NELNLLVNFITEKNIHLISDEIYS 54 (289)
Q Consensus 31 ~~l~~l~~~~~~~~~~li~Dea~~ 54 (289)
+.++++++.|+++|+.||+|--..
T Consensus 62 ~~ld~~v~~a~~~gi~vild~h~~ 85 (281)
T PF00150_consen 62 ARLDRIVDAAQAYGIYVILDLHNA 85 (281)
T ss_dssp HHHHHHHHHHHHTT-EEEEEEEES
T ss_pred HHHHHHHHHHHhCCCeEEEEeccC
Confidence 378999999999999999986664
No 442
>PF09885 DUF2112: Uncharacterized protein conserved in archaea (DUF2112); InterPro: IPR012356 The exact function of this protein is unknown, but likely is linked to methanogenesis or a process closely connected to it.
Probab=30.50 E-value=1.4e+02 Score=22.86 Aligned_cols=26 Identities=12% Similarity=0.287 Sum_probs=20.9
Q ss_pred eEEEEEecCCHHHHHHHHHHHHHHHHH
Q 044773 224 WFRVCFANMSEDTLKLSMQRLKAFVDS 250 (289)
Q Consensus 224 ~~Ris~~~~~~e~l~~~l~~l~~~l~~ 250 (289)
.+-+.+.. ++++....++++.++++.
T Consensus 117 iLel~YP~-~~ee~~~~V~~I~~FL~~ 142 (143)
T PF09885_consen 117 ILELKYPT-NEEEAIDFVNKINDFLKS 142 (143)
T ss_pred eEEeeCCC-ChHHHHHHHHHHHHHHhc
Confidence 35666663 889999999999999875
No 443
>TIGR00695 uxuA mannonate dehydratase. This Fe2+-requiring enzyme plays a role in D-glucuronate catabolism in Escherichia coli. Mannonate dehydratase converts D-mannonate to 2-dehydro-3-deoxy-D-gluconate. An apparent equivalog is found in a glucuronate utilization operon in Bacillus stearothermophilus T-6.
Probab=30.05 E-value=1.4e+02 Score=27.47 Aligned_cols=40 Identities=15% Similarity=0.276 Sum_probs=33.3
Q ss_pred CCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEE
Q 044773 10 LKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLIS 49 (289)
Q Consensus 10 ~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~ 49 (289)
.++..|+..-++-|.|.+|+.+++.++.+.+.++|+.+-+
T Consensus 22 ~G~~giV~al~~~p~gevW~~~~i~~~k~~ie~~GL~~~v 61 (394)
T TIGR00695 22 AGATGIVTALHHIPNGEVWEKEEIRKRKEYIESAGLHWSV 61 (394)
T ss_pred cCCcceeecCCCCCCCCCCCHHHHHHHHHHHHHcCCeEEE
Confidence 4677777665678999999999999999999999876655
No 444
>PF04002 RadC: RadC-like JAB domain; InterPro: IPR001405 This family was named initially with reference to the Escherichia coli radC102 mutation which suggested that RadC was involved in repair of DNA lesions []. However the relevant mutation has subsequently been shown to be in recG, not radC []. In addition all attempts to characterise a radiation-related function for RadC in Streptococcus pneumoniae failed, suggesting that it is not involved in repair of DNA lesions, in recombination during transformation, in gene conversion, nor in mismatch repair [].; PDB: 2QLC_A.
Probab=29.92 E-value=1.7e+02 Score=21.89 Aligned_cols=43 Identities=19% Similarity=0.300 Sum_probs=20.4
Q ss_pred hHHHhhhCCCccEEEEeCCCCCCccCC-CHHHH---HHHHHHHHHcCCEE
Q 044773 2 YQLAQKRHLKVKGVLVTNPSNPLGTTM-SRNEL---NLLVNFITEKNIHL 47 (289)
Q Consensus 2 l~~~~~~~~~~~~i~l~~p~NPtG~~~-~~~~l---~~l~~~~~~~~~~l 47 (289)
+++++..+ ...+++.+ |.|+|... |.+++ ++|.+.|+.-++.+
T Consensus 57 ~~~al~~~--A~~vIl~H-NHPsG~~~PS~~D~~~T~~L~~~~~~l~I~l 103 (123)
T PF04002_consen 57 FRRALRLN--ASSVILAH-NHPSGDPEPSDADIALTRRLKKAARLLGIEL 103 (123)
T ss_dssp HHHHHHTT---SEEEEEE-E-TTS--S--HHHHHHHHHHHHHHHHHT-EE
T ss_pred HHHHHhhC--CceEEEEE-EcCCCCCCCCHhHHHHHHHHHHHHHHcCCee
Confidence 35566655 33333332 23455444 55566 67777777765543
No 445
>PLN02361 alpha-amylase
Probab=29.48 E-value=63 Score=29.79 Aligned_cols=45 Identities=18% Similarity=0.204 Sum_probs=33.3
Q ss_pred CccEEEEeCCC-CC--Ccc-----------CCCHHHHHHHHHHHHHcCCEEEEecCCCC
Q 044773 11 KVKGVLVTNPS-NP--LGT-----------TMSRNELNLLVNFITEKNIHLISDEIYSG 55 (289)
Q Consensus 11 ~~~~i~l~~p~-NP--tG~-----------~~~~~~l~~l~~~~~~~~~~li~Dea~~~ 55 (289)
+..+|.++.|. +. .|- .-+.++++++++.|+++|+.||.|-+.-+
T Consensus 42 G~t~iwl~P~~~~~~~~GY~~~d~y~~~~~~Gt~~el~~li~~~h~~gi~vi~D~V~NH 100 (401)
T PLN02361 42 GFTSAWLPPPSQSLAPEGYLPQNLYSLNSAYGSEHLLKSLLRKMKQYNVRAMADIVINH 100 (401)
T ss_pred CCCEEEeCCCCcCCCCCCCCcccccccCcccCCHHHHHHHHHHHHHcCCEEEEEEcccc
Confidence 57777777662 21 111 12567999999999999999999999754
No 446
>PRK05583 ribosomal protein L7Ae family protein; Provisional
Probab=29.47 E-value=1.9e+02 Score=20.98 Aligned_cols=38 Identities=29% Similarity=0.397 Sum_probs=26.1
Q ss_pred hHHHhhhCCCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEE
Q 044773 2 YQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHL 47 (289)
Q Consensus 2 l~~~~~~~~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~l 47 (289)
+++++++. ++++|++.+ + .+++..+++.+.|+.+++.+
T Consensus 25 v~~aik~g-k~~lVI~A~--D-----~s~~~kkki~~~~~~~~vp~ 62 (104)
T PRK05583 25 CEEAIKKK-KVYLIIISN--D-----ISENSKNKFKNYCNKYNIPY 62 (104)
T ss_pred HHHHHHcC-CceEEEEeC--C-----CCHhHHHHHHHHHHHcCCCE
Confidence 34566654 677766653 2 56677899999998877665
No 447
>PRK14706 glycogen branching enzyme; Provisional
Probab=29.08 E-value=86 Score=30.89 Aligned_cols=32 Identities=19% Similarity=0.156 Sum_probs=27.4
Q ss_pred cCCCHHHHHHHHHHHHHcCCEEEEecCCCCCc
Q 044773 26 TTMSRNELNLLVNFITEKNIHLISDEIYSGTV 57 (289)
Q Consensus 26 ~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~ 57 (289)
.--+.++++++++.|++.|+-||.|-++..+.
T Consensus 212 ~~g~~~~~~~lv~~~H~~gi~VilD~v~nH~~ 243 (639)
T PRK14706 212 RLGTPEDFKYLVNHLHGLGIGVILDWVPGHFP 243 (639)
T ss_pred ccCCHHHHHHHHHHHHHCCCEEEEEecccccC
Confidence 33467899999999999999999999998653
No 448
>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only]
Probab=29.06 E-value=83 Score=27.68 Aligned_cols=65 Identities=14% Similarity=0.265 Sum_probs=44.2
Q ss_pred hHHHhhhCCCccEEEEeCCCCCCc------------------cCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCc
Q 044773 2 YQLAQKRHLKVKGVLVTNPSNPLG------------------TTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGF 63 (289)
Q Consensus 2 l~~~~~~~~~~~~i~l~~p~NPtG------------------~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~ 63 (289)
++++++.. ++.+|++++|+.-.. ...+.++.++|+++|+++++.+.+..-+. | .+..
T Consensus 59 ~~~ll~~~-~iD~V~Iatp~~~H~e~~~~AL~aGkhVl~EKPla~t~~ea~~l~~~a~~~~~~l~v~~~~R---f-~p~~ 133 (342)
T COG0673 59 LEELLADP-DIDAVYIATPNALHAELALAALEAGKHVLCEKPLALTLEEAEELVELARKAGVKLMVGFNRR---F-DPAV 133 (342)
T ss_pred HHHHhcCC-CCCEEEEcCCChhhHHHHHHHHhcCCEEEEcCCCCCCHHHHHHHHHHHHHcCCceeeehhhh---c-CHHH
Confidence 45555543 688888888854211 23577888999999999999998887776 2 2444
Q ss_pred cChhhhhh
Q 044773 64 VSIMEILK 71 (289)
Q Consensus 64 ~~~~~~~~ 71 (289)
..+.+++.
T Consensus 134 ~~~k~li~ 141 (342)
T COG0673 134 QALKELID 141 (342)
T ss_pred HHHHHHHh
Confidence 55555554
No 449
>PF00728 Glyco_hydro_20: Glycosyl hydrolase family 20, catalytic domain; InterPro: IPR015883 Glycoside hydrolase family 20 GH20 from CAZY comprises enzymes with several known activities; beta-hexosaminidase (3.2.1.52 from EC); lacto-N-biosidase (3.2.1.140 from EC). Carbonyl oxygen of the C-2 acetamido group of the substrate acts as the catalytic nucleophile/base in this family of enzymes. In the brain and other tissues, beta-hexosaminidase A degrades GM2 gangliosides; specifically, the enzyme hydrolyses terminal non-reducing N-acetyl-D-hexosamine residues in N-acetyl-beta-D-hexosaminides. There are 3 forms of beta-hexosaminidase: hexosaminidase A is a trimer, with one alpha, one beta-A and one beta-B chain; hexosaminidase B is a tetramer of two beta-A and two beta-B chains; and hexosaminidase S is a homodimer of alpha chains. The two beta chains are derived from the cleavage of a precursor. Mutations in the beta-chain lead to Sandhoff disease, a lysosomal storage disorder characterised by accumulation of GM2 ganglioside [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds; PDB: 3RPM_A 1C7T_A 1QBA_A 1QBB_A 1C7S_A 3RCN_A 2YL8_A 2YL6_A 2YLL_A 2YL5_C ....
Probab=28.59 E-value=48 Score=29.55 Aligned_cols=23 Identities=22% Similarity=0.505 Sum_probs=20.4
Q ss_pred CCCHHHHHHHHHHHHHcCCEEEE
Q 044773 27 TMSRNELNLLVNFITEKNIHLIS 49 (289)
Q Consensus 27 ~~~~~~l~~l~~~~~~~~~~li~ 49 (289)
.++.+++++|++.|+++|+-||-
T Consensus 69 ~yT~~di~~lv~yA~~~gI~VIP 91 (351)
T PF00728_consen 69 YYTKEDIRELVAYAKERGIEVIP 91 (351)
T ss_dssp EBEHHHHHHHHHHHHHTT-EEEE
T ss_pred cCCHHHHHHHHHHHHHcCCceee
Confidence 89999999999999999988874
No 450
>cd06570 GH20_chitobiase-like_1 A functionally uncharacterized subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the chitobiase of Serratia marcescens, a beta-N-1,4-acetylhexosaminidase that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. This subgroup lacks the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=28.55 E-value=71 Score=28.30 Aligned_cols=25 Identities=12% Similarity=0.452 Sum_probs=22.1
Q ss_pred ccCCCHHHHHHHHHHHHHcCCEEEE
Q 044773 25 GTTMSRNELNLLVNFITEKNIHLIS 49 (289)
Q Consensus 25 G~~~~~~~l~~l~~~~~~~~~~li~ 49 (289)
|..++.+++++|++.|+++|+-||-
T Consensus 62 ~~~yT~~di~elv~yA~~rgI~vIP 86 (311)
T cd06570 62 GLYYTQEQIREVVAYARDRGIRVVP 86 (311)
T ss_pred CCccCHHHHHHHHHHHHHcCCEEEE
Confidence 4569999999999999999987774
No 451
>COG0669 CoaD Phosphopantetheine adenylyltransferase [Coenzyme metabolism]
Probab=28.43 E-value=1.9e+02 Score=22.85 Aligned_cols=39 Identities=26% Similarity=0.187 Sum_probs=28.2
Q ss_pred hHHHhhhCCCccEEEEeCCC-CCCccCCCHHHHHHHHHHHHHc
Q 044773 2 YQLAQKRHLKVKGVLVTNPS-NPLGTTMSRNELNLLVNFITEK 43 (289)
Q Consensus 2 l~~~~~~~~~~~~i~l~~p~-NPtG~~~~~~~l~~l~~~~~~~ 43 (289)
++++.+.-...-+.+..||+ +| .++.+++.++++-+.++
T Consensus 22 i~RA~~~Fd~viVaV~~np~K~p---lFsleER~~l~~~~~~~ 61 (159)
T COG0669 22 IKRASALFDEVIVAVAINPSKKP---LFSLEERVELIREATKH 61 (159)
T ss_pred HHHHHHhccEEEEEEEeCCCcCC---CcCHHHHHHHHHHHhcC
Confidence 45666666566666888885 66 48999998888877664
No 452
>PF05913 DUF871: Bacterial protein of unknown function (DUF871); InterPro: IPR008589 This family consists of several conserved hypothetical proteins from bacteria and archaea. The function of this family is unknown though a number are annotated as outer surface proteins.; PDB: 2P0O_A 1X7F_A.
Probab=28.29 E-value=65 Score=29.17 Aligned_cols=87 Identities=17% Similarity=0.174 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEecCccccCCCCceEEEEEecCH
Q 044773 30 RNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVYSLSKDLGLPGFRVGAIYSNDD 109 (289)
Q Consensus 30 ~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~s~sK~~g~~G~r~G~i~~~~~ 109 (289)
.+++++|.++|+++|..+++|=.-..+..-|.....+.. | |.+|..|+|+=+=+. .+
T Consensus 46 ~~~~~~l~~~a~~~~~~v~~Disp~~l~~lg~~~~dl~~---------------------~-~~lGi~~lRlD~Gf~-~~ 102 (357)
T PF05913_consen 46 LERLKELLKLAKELGMEVIADISPKVLKKLGISYDDLSF---------------------F-KELGIDGLRLDYGFS-GE 102 (357)
T ss_dssp HHHHHHHHHHHHHCT-EEEEEE-CCHHHTTT-BTTBTHH---------------------H-HHHT-SEEEESSS-S-CH
T ss_pred HHHHHHHHHHHHHCCCEEEEECCHHHHHHcCCCHHHHHH---------------------H-HHcCCCEEEECCCCC-HH
Confidence 468899999999999999999776544222322222211 2 457778888766555 34
Q ss_pred HHHHHHHh-ccccCCCChHHHHHHHHHhCCc
Q 044773 110 TVVAAATK-MSSFGLVSSQTQYLLSALLSDK 139 (289)
Q Consensus 110 ~~~~~~~~-~~~~~~~~~~~q~~~~~~l~~~ 139 (289)
.+...-+. +.--.+.|.+...-+..+++.+
T Consensus 103 ~ia~ls~ng~~I~LNASti~~~~l~~L~~~~ 133 (357)
T PF05913_consen 103 EIAKLSKNGIKIELNASTITEEELDELIKYG 133 (357)
T ss_dssp HHHHHTTT-SEEEEETTT--CCHHHHHCCTT
T ss_pred HHHHHHhCCCEEEEECCCCChHHHHHHHHhc
Confidence 44443333 2222235556666666666543
No 453
>PRK10785 maltodextrin glucosidase; Provisional
Probab=28.09 E-value=76 Score=30.93 Aligned_cols=46 Identities=15% Similarity=0.213 Sum_probs=34.6
Q ss_pred CccEEEEeCC-CCCCccC-------------CCHHHHHHHHHHHHHcCCEEEEecCCCCC
Q 044773 11 KVKGVLVTNP-SNPLGTT-------------MSRNELNLLVNFITEKNIHLISDEIYSGT 56 (289)
Q Consensus 11 ~~~~i~l~~p-~NPtG~~-------------~~~~~l~~l~~~~~~~~~~li~Dea~~~~ 56 (289)
++.+|+++.+ .+|+.-- -+.+++++|++-|++.|+.||.|-++.+.
T Consensus 192 Gv~~I~L~Pif~s~s~hgYd~~Dy~~iDp~~Gt~~df~~Lv~~aH~rGikVilD~V~NH~ 251 (598)
T PRK10785 192 GVTALYLNPIFTAPSVHKYDTEDYRHVDPQLGGDAALLRLRHATQQRGMRLVLDGVFNHT 251 (598)
T ss_pred CCCEEEeCCcccCCCCCCcCcccccccCcccCCHHHHHHHHHHHHHCCCEEEEEECCCcC
Confidence 6778777754 3443321 14679999999999999999999998654
No 454
>PRK13109 flhB flagellar biosynthesis protein FlhB; Reviewed
Probab=27.93 E-value=56 Score=29.60 Aligned_cols=43 Identities=16% Similarity=0.213 Sum_probs=29.1
Q ss_pred CCccEEEEeCC-CCCCccCCCHH--------------HHHHHHHHHHHcCCEEEEecCC
Q 044773 10 LKVKGVLVTNP-SNPLGTTMSRN--------------ELNLLVNFITEKNIHLISDEIY 53 (289)
Q Consensus 10 ~~~~~i~l~~p-~NPtG~~~~~~--------------~l~~l~~~~~~~~~~li~Dea~ 53 (289)
++..+ +++|| |.--+.-++++ -=.+|.++|+++|+.+++|-.-
T Consensus 263 ~~AdV-VItNPTH~AVAL~Yd~~~~~aP~VvAKG~d~~A~~Ir~~A~e~~VPiven~pL 320 (358)
T PRK13109 263 PRATL-VIANPTHFAIALRYERSENPAPLVVAKGQDLIALKIREIAEENGIPVIEDKPL 320 (358)
T ss_pred CCCcE-EEECCCceEEEeEeCCCCCCCCEEEEEeCcHHHHHHHHHHHHcCCCEEeCHHH
Confidence 45555 77888 54334444322 2378889999999999999764
No 455
>TIGR03271 methan_mark_5 putative methanogenesis marker protein 5. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it.
Probab=27.91 E-value=1.5e+02 Score=22.58 Aligned_cols=26 Identities=19% Similarity=0.409 Sum_probs=20.9
Q ss_pred eEEEEEecCCHHHHHHHHHHHHHHHHH
Q 044773 224 WFRVCFANMSEDTLKLSMQRLKAFVDS 250 (289)
Q Consensus 224 ~~Ris~~~~~~e~l~~~l~~l~~~l~~ 250 (289)
.+-+.+.. ++++....++++.+++++
T Consensus 116 iLEl~YP~-~~e~~~~~V~~i~~FL~~ 141 (142)
T TIGR03271 116 ILELDYPT-SEEEGIIFVRKINDFLDS 141 (142)
T ss_pred eEEeeCCC-ChhHHHHHHHHHHHHHhc
Confidence 35666653 789999999999999875
No 456
>TIGR02102 pullulan_Gpos pullulanase, extracellular, Gram-positive. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. In contrast, a glycogen debranching enzyme such GlgX, homologous to this family, can release glucose at alpha,1-6 linkages from glycogen first subjected to limit degradation by phosphorylase. Characterized members of this family include a surface-located pullulanase from Streptococcus pneumoniae (PubMed:11083842) and an extracellular bifunctional amylase/pullulanase with C-terminal pullulanase activity (PubMed:8798645).
Probab=27.83 E-value=85 Score=33.05 Aligned_cols=27 Identities=30% Similarity=0.448 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHcCCEEEEecCCCCC
Q 044773 30 RNELNLLVNFITEKNIHLISDEIYSGT 56 (289)
Q Consensus 30 ~~~l~~l~~~~~~~~~~li~Dea~~~~ 56 (289)
.++++++++-|++.|+-||.|-+|.+.
T Consensus 554 i~EfK~LV~alH~~GI~VILDVVyNHt 580 (1111)
T TIGR02102 554 IAEFKNLINEIHKRGMGVILDVVYNHT 580 (1111)
T ss_pred HHHHHHHHHHHHHCCCEEEEecccccc
Confidence 578999999999999999999999754
No 457
>cd06569 GH20_Sm-chitobiase-like The chitobiase of Serratia marcescens is a beta-N-1,4-acetylhexosaminidase with a glycosyl hydrolase family 20 (GH20) domain that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=27.31 E-value=79 Score=29.58 Aligned_cols=26 Identities=15% Similarity=0.268 Sum_probs=22.6
Q ss_pred CccCCCHHHHHHHHHHHHHcCCEEEE
Q 044773 24 LGTTMSRNELNLLVNFITEKNIHLIS 49 (289)
Q Consensus 24 tG~~~~~~~l~~l~~~~~~~~~~li~ 49 (289)
.|-.++.+++++|++.|+++++-||-
T Consensus 90 ~~g~YT~~di~eiv~yA~~rgI~VIP 115 (445)
T cd06569 90 GSGYYSRADYIEILKYAKARHIEVIP 115 (445)
T ss_pred cCCccCHHHHHHHHHHHHHcCCEEEE
Confidence 35679999999999999999988764
No 458
>PRK14705 glycogen branching enzyme; Provisional
Probab=26.93 E-value=96 Score=33.01 Aligned_cols=34 Identities=18% Similarity=0.235 Sum_probs=29.0
Q ss_pred CCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCC
Q 044773 23 PLGTTMSRNELNLLVNFITEKNIHLISDEIYSGT 56 (289)
Q Consensus 23 PtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~ 56 (289)
|+..--+.++++++++.|++.|+-||.|=++.++
T Consensus 807 p~~ryGt~~dfk~lVd~~H~~GI~VILD~V~nH~ 840 (1224)
T PRK14705 807 PTSRFGHPDEFRFLVDSLHQAGIGVLLDWVPAHF 840 (1224)
T ss_pred cCcccCCHHHHHHHHHHHHHCCCEEEEEeccccC
Confidence 3444447889999999999999999999999865
No 459
>PF03652 UPF0081: Uncharacterised protein family (UPF0081); InterPro: IPR005227 Holliday junction resolvases (HJRs) are key enzymes of DNA recombination. The principal HJRs are now known or confidently predicted for all bacteria and archaea whose genomes have been completely sequenced, with many species encoding multiple potential HJRs. Structural and evolutionary relationships of HJRs and related nucleases suggests that the HJR function has evolved independently from at least four distinct structural folds, namely RNase H, endonuclease, endonuclease VII-colicin E and RusA (IPR008822 from INTERPRO): The endonuclease fold, whose structural prototypes are the phage exonuclease, the very short patch repair nuclease (Vsr) and type II restriction enzymes, is shown to encompass by far a greater diversity of nucleases than previously suspected. This fold unifies archaeal HJRs (IPR002732 from INTERPRO), repair nucleases such as RecB (IPR004586 from INTERPRO) and Vsr (IPR004603 from INTERPRO), restriction enzymes and a variety of predicted nucleases whose specific activities remain to be determined. The RNase H fold characterises the RuvC family (IPR002176 from INTERPRO), which is nearly ubiquitous in bacteria, and in addition the YqgF family (IPR005227 from INTERPRO). The proteins of this family, typified by Escherichia coli YqgF, are likely to function as an alternative to RuvC in most bacteria, but could be the principal HJRs in low-GC Gram-positive bacteria and Aquifex. Endonuclease VII of phage T4 (IPR004211 from INTERPRO) is shown to serve as a structural template for many nucleases, including McrA and other type II restriction enzymes. Together with colicin E7, endonuclease VII defines a distinct metal-dependent nuclease fold. Horizontal gene transfer, lineage-specific gene loss and gene family expansion, and non-orthologous gene displacement seem to have been major forces in the evolution of HJRs and related nucleases. A remarkable case of displacement is seen in the Lyme disease spirochete Borrelia burgdorferi, which does not possess any of the typical HJRs, but instead encodes, in its chromosome and each of the linear plasmids, members of the exonuclease family predicted to function as HJRs. The diversity of HJRs and related nucleases in bacteria and archaea contrasts with their near absence in eukaryotes. The few detected eukaryotic representatives of the endonuclease fold and the RNase H fold have probably been acquired from bacteria via horizontal gene transfer. The identity of the principal HJR(s) involved in recombination in eukaryotes remains uncertain; this function could be performed by topoisomerase IB or by a novel, so far undetected, class of enzymes. Likely HJRs and related nucleases were identified in the genomes of numerous bacterial and eukaryotic DNA viruses. Gene flow between viral and cellular genomes has probably played a major role in the evolution of this class of enzymes. This family represents the YqgF family of putative Holliday junction resolvases. With the exception of the spirochetes, the YqgF family is represented in all bacterial lineages, including the mycoplasmas with their highly degenerate genomes. The RuvC resolvases are conspicuously absent in the low-GC Gram-positive bacterial lineage, with the exception of Ureaplasma parvum (Ureaplasma urealyticum biotype 1) (Q9PQY7 from SWISSPROT, []). Furthermore, loss of function ruvC mutants of E. coli show a residual HJR activity that cannot be ascribed to the prophage-encoded RusA resolvase []. This suggests that the YqgF family proteins could be alternative HJRs whose function partially overlaps with that of RuvC [].; GO: 0016788 hydrolase activity, acting on ester bonds, 0006281 DNA repair, 0006310 DNA recombination, 0006974 response to DNA damage stimulus, 0005737 cytoplasm; PDB: 1NU0_A 1OVQ_A 1NMN_B 1VHX_B 1IV0_A.
Probab=26.79 E-value=1.3e+02 Score=22.92 Aligned_cols=53 Identities=15% Similarity=0.229 Sum_probs=34.0
Q ss_pred hHHHhhhCCCccEEEEeCCCCCCccCCCHH-HHHHHHHHHHH-c-CC-EEEEecCCCC
Q 044773 2 YQLAQKRHLKVKGVLVTNPSNPLGTTMSRN-ELNLLVNFITE-K-NI-HLISDEIYSG 55 (289)
Q Consensus 2 l~~~~~~~~~~~~i~l~~p~NPtG~~~~~~-~l~~l~~~~~~-~-~~-~li~Dea~~~ 55 (289)
+.+.++.. ++..+++-.|-|..|..-+.. ...++++.+++ + ++ +..+||-++.
T Consensus 43 l~~li~~~-~i~~iVvGlP~~~~G~~~~~~~~v~~f~~~L~~~~~~ipV~~~DEr~TT 99 (135)
T PF03652_consen 43 LKKLIEEY-QIDGIVVGLPLNMDGSESEQARRVRKFAEELKKRFPGIPVILVDERLTT 99 (135)
T ss_dssp HHHHHHHC-CECEEEEEEEBBCTSSC-CCHHHHHHHHHHHHHHH-TSEEEEEECSCSH
T ss_pred HHHHHHHh-CCCEEEEeCCcccCCCccHHHHHHHHHHHHHHHhcCCCcEEEECCChhH
Confidence 44556666 788999999977767654432 44555554444 3 55 4578998875
No 460
>COG1105 FruK Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB) [Carbohydrate transport and metabolism]
Probab=26.72 E-value=2.4e+02 Score=24.98 Aligned_cols=28 Identities=11% Similarity=0.214 Sum_probs=19.6
Q ss_pred CCHHHHHHHHHHHHHcCCEEEEecCCCC
Q 044773 28 MSRNELNLLVNFITEKNIHLISDEIYSG 55 (289)
Q Consensus 28 ~~~~~l~~l~~~~~~~~~~li~Dea~~~ 55 (289)
++.+...+|+++|++.++.+++|..-..
T Consensus 143 ~~~d~y~~li~~~~~~g~~vilD~Sg~~ 170 (310)
T COG1105 143 VPPDAYAELIRILRQQGAKVILDTSGEA 170 (310)
T ss_pred CCHHHHHHHHHHHHhcCCeEEEECChHH
Confidence 4566777777777777777777766543
No 461
>cd06562 GH20_HexA_HexB-like Beta-N-acetylhexosaminidases catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. The hexA and hexB genes encode the alpha- and beta-subunits of the two major beta-N-acetylhexosaminidase isoenzymes, N-acetyl-beta-D-hexosaminidase A (HexA) and beta-N-acetylhexosaminidase B (HexB). Both the alpha and the beta catalytic subunits have a TIM-barrel fold and belong to the glycosyl hydrolase family 20 (GH20). The HexA enzyme is a heterodimer containing one alpha and one beta subunit while the HexB enzyme is a homodimer containing two beta-subunits. Hexosaminidase mutations cause an inability to properly hydrolyze certain sphingolipids which accumulate in lysosomes within the brain, resulting in the lipid storage disorders Tay-Sachs and Sandhoff. Mutations in the alpha subunit cause in a deficiency in the HexA enzyme and result in
Probab=26.40 E-value=73 Score=28.69 Aligned_cols=26 Identities=12% Similarity=0.374 Sum_probs=22.8
Q ss_pred ccCCCHHHHHHHHHHHHHcCCEEEEe
Q 044773 25 GTTMSRNELNLLVNFITEKNIHLISD 50 (289)
Q Consensus 25 G~~~~~~~l~~l~~~~~~~~~~li~D 50 (289)
|-.++.+++++|++.|+++++-||-.
T Consensus 64 ~~~YT~~di~eiv~yA~~rgI~vIPE 89 (348)
T cd06562 64 SEVYTPEDVKEIVEYARLRGIRVIPE 89 (348)
T ss_pred CceECHHHHHHHHHHHHHcCCEEEEe
Confidence 55689999999999999999888753
No 462
>KOG0622 consensus Ornithine decarboxylase [Amino acid transport and metabolism]
Probab=26.28 E-value=2.1e+02 Score=26.46 Aligned_cols=52 Identities=13% Similarity=0.172 Sum_probs=36.1
Q ss_pred hHHHhhhCCCccEEEEeCCCCCCccC-------CCHHHHHHHHHHHHHcCCEEEEecCC
Q 044773 2 YQLAQKRHLKVKGVLVTNPSNPLGTT-------MSRNELNLLVNFITEKNIHLISDEIY 53 (289)
Q Consensus 2 l~~~~~~~~~~~~i~l~~p~NPtG~~-------~~~~~l~~l~~~~~~~~~~li~Dea~ 53 (289)
|.+..+.+|+.++|+-..+..++++. .+.++.++|++.+++.++-|+==.-|
T Consensus 157 l~kv~~~hP~a~llLrIatdds~a~~~l~~KFG~~~~~~~~lLd~ak~l~lnvvGvsfH 215 (448)
T KOG0622|consen 157 LEKVAKSHPNANLLLRIATDDSTATCRLNLKFGCSLDNCRHLLDMAKELELNVVGVSFH 215 (448)
T ss_pred HHHHHHhCCCceEEEEEccCCCcccccccCccCCCHHHHHHHHHHHHHcCceEEEEEEE
Confidence 34566778999998777764433322 46679999999999987776643333
No 463
>TIGR02103 pullul_strch alpha-1,6-glucosidases, pullulanase-type. Members of this protein family include secreted (or membrane-anchored) pullulanases of Gram-negative bacteria and pullulanase-type starch debranching enzymes of plants. Both enzymes hydrolyze alpha-1,6 glycosidic linkages. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family is closely homologous to, but architecturally different from, the Gram-positive pullulanases of Gram-positive bacteria (TIGR02102).
Probab=26.11 E-value=1.1e+02 Score=31.56 Aligned_cols=30 Identities=20% Similarity=0.357 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHcCCEEEEecCCCCCccC
Q 044773 30 RNELNLLVNFITEKNIHLISDEIYSGTVFS 59 (289)
Q Consensus 30 ~~~l~~l~~~~~~~~~~li~Dea~~~~~~~ 59 (289)
..+++++++-|++.|+.||.|-+|-+....
T Consensus 403 i~Efk~mV~alH~~Gi~VIlDVVyNHt~~~ 432 (898)
T TIGR02103 403 IKEFREMVQALNKTGLNVVMDVVYNHTNAS 432 (898)
T ss_pred HHHHHHHHHHHHHCCCEEEEEeeccccccc
Confidence 468999999999999999999999876443
No 464
>PF08543 Phos_pyr_kin: Phosphomethylpyrimidine kinase; InterPro: IPR013749 This enzyme 2.7.4.7 from EC is part of the Thiamine pyrophosphate (TPP) synthesis pathway, TPP is an essential cofactor for many enzymes []. ; PDB: 2DDW_B 2DDO_B 2DDM_A 3IBQ_A 3H74_A 3HYO_A 1UB0_A 1VI9_D 1TD2_B 2PHP_D ....
Probab=25.90 E-value=88 Score=26.44 Aligned_cols=32 Identities=16% Similarity=0.440 Sum_probs=23.3
Q ss_pred CccCCCHHHHHHHHHHHHHcCCEEEEecCCCC
Q 044773 24 LGTTMSRNELNLLVNFITEKNIHLISDEIYSG 55 (289)
Q Consensus 24 tG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~ 55 (289)
+|.+.+.+.++.|.++.++++..+|+|=+..+
T Consensus 66 iG~l~~~~~v~~i~~~l~~~~~~vV~DPVm~~ 97 (246)
T PF08543_consen 66 IGYLGSAEQVEIIADFLKKPKIPVVLDPVMGD 97 (246)
T ss_dssp E-S-SSHHHHHHHHHHHHHTTTEEEEE---EE
T ss_pred EcccCCchhhhhHHHHHhccCCCEEEeccccc
Confidence 47788899999999999888999999988763
No 465
>PF01248 Ribosomal_L7Ae: Ribosomal protein L7Ae/L30e/S12e/Gadd45 family; InterPro: IPR004038 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, ribosomal protein L30 from eukaryotes and archaebacteria, Gadd45 and MyD118 [].; PDB: 2CZW_A 3V7E_B 2QEX_F 1YJ9_F 1VQ8_F 1YJN_F 3I56_F 1VQ6_F 2OTJ_F 1YIJ_F ....
Probab=25.84 E-value=1.9e+02 Score=20.08 Aligned_cols=42 Identities=26% Similarity=0.290 Sum_probs=28.5
Q ss_pred HHHhhhCCCccEEEEeCCCCCCccCCCHHHHHH-HHHHHHHcCCEEEEecC
Q 044773 3 QLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNL-LVNFITEKNIHLISDEI 52 (289)
Q Consensus 3 ~~~~~~~~~~~~i~l~~p~NPtG~~~~~~~l~~-l~~~~~~~~~~li~Dea 52 (289)
.+++.+. +.+++++.+--+| ..+.+ +..+|.++++.++.-..
T Consensus 24 ~k~l~~~-~~~lvilA~d~~~-------~~~~~~l~~~c~~~~Ip~~~~~s 66 (95)
T PF01248_consen 24 LKALKKG-KAKLVILAEDCSP-------DSIKKHLPALCEEKNIPYVFVPS 66 (95)
T ss_dssp HHHHHTT-CESEEEEETTSSS-------GHHHHHHHHHHHHTTEEEEEESH
T ss_pred HHHHHcC-CCcEEEEcCCCCh-------hhhcccchhheeccceeEEEECC
Confidence 4555555 7888888765333 23555 88899999988876554
No 466
>PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.
Probab=25.42 E-value=5.1e+02 Score=24.40 Aligned_cols=55 Identities=13% Similarity=0.239 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHHHHHhcCCceecCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCC
Q 044773 150 KKRLKQRHRKLVSGLEKAGISCLKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGS 215 (289)
Q Consensus 150 ~~~~~~~~~~l~~~l~~~g~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~ 215 (289)
|..|.+.-++..+.|+++|= | |.+.++...+.. .+..+++..|-++|++.+.|..
T Consensus 162 Re~Y~eAEervI~ELk~igK----P---FvillNs~~P~s----~et~~L~~eL~ekY~vpVlpvn 216 (492)
T PF09547_consen 162 RENYVEAEERVIEELKEIGK----P---FVILLNSTKPYS----EETQELAEELEEKYDVPVLPVN 216 (492)
T ss_pred hHHHHHHHHHHHHHHHHhCC----C---EEEEEeCCCCCC----HHHHHHHHHHHHHhCCcEEEee
Confidence 45566666778899988642 2 556666555443 3446799999999999988754
No 467
>TIGR02100 glgX_debranch glycogen debranching enzyme GlgX. This family consists of the GlgX protein from the E. coli glycogen operon and probable equivalogs from other prokaryotic species. GlgX is not required for glycogen biosynthesis, but instead acts as a debranching enzyme for glycogen catabolism. This model distinguishes GlgX from pullanases and other related proteins that also operate on alpha-1,6-glycosidic linkages. In the wide band between the trusted and noise cutoffs are functionally similar enzymes, mostly from plants, that act similarly but usually are termed isoamylase.
Probab=24.68 E-value=1e+02 Score=30.60 Aligned_cols=29 Identities=24% Similarity=0.418 Sum_probs=26.0
Q ss_pred CHHHHHHHHHHHHHcCCEEEEecCCCCCc
Q 044773 29 SRNELNLLVNFITEKNIHLISDEIYSGTV 57 (289)
Q Consensus 29 ~~~~l~~l~~~~~~~~~~li~Dea~~~~~ 57 (289)
+.++++++++-|++.|+.||.|-++....
T Consensus 243 ~~~efk~LV~~~H~~GI~VIlDvV~NHt~ 271 (688)
T TIGR02100 243 QVAEFKTMVRALHDAGIEVILDVVYNHTA 271 (688)
T ss_pred CHHHHHHHHHHHHHCCCEEEEEECcCCcc
Confidence 57899999999999999999999997653
No 468
>PRK12721 secretion system apparatus protein SsaU; Reviewed
Probab=24.33 E-value=45 Score=30.09 Aligned_cols=44 Identities=14% Similarity=0.141 Sum_probs=29.0
Q ss_pred CCCccEEEEeCC-CCCCccCCCHH--------------HHHHHHHHHHHcCCEEEEecCC
Q 044773 9 HLKVKGVLVTNP-SNPLGTTMSRN--------------ELNLLVNFITEKNIHLISDEIY 53 (289)
Q Consensus 9 ~~~~~~i~l~~p-~NPtG~~~~~~--------------~l~~l~~~~~~~~~~li~Dea~ 53 (289)
-++..+ +++|| |.--+.-++++ -=.+|.++|+++|+.+++|-.-
T Consensus 253 V~~AdV-VItNPTH~AVAL~Yd~~~~~aP~VvAKG~d~~A~~Ir~iA~e~~VPiven~pL 311 (349)
T PRK12721 253 VKKSTA-VVRNPTHIAVCLYYHPGETPLPRVLEKGKDAQALHIVKLAERNGIPVVENIPL 311 (349)
T ss_pred CCCCcE-EEEcCCceEEEEEeCCCCCCCCEEEEEeCcHHHHHHHHHHHHcCCCEEeCHHH
Confidence 345555 77888 43333333321 2368899999999999998654
No 469
>PRK06298 type III secretion system protein; Validated
Probab=24.25 E-value=72 Score=28.91 Aligned_cols=44 Identities=7% Similarity=0.111 Sum_probs=29.8
Q ss_pred CCccEEEEeCC-CCCCccCCCH--------------HHHHHHHHHHHHcCCEEEEecCCC
Q 044773 10 LKVKGVLVTNP-SNPLGTTMSR--------------NELNLLVNFITEKNIHLISDEIYS 54 (289)
Q Consensus 10 ~~~~~i~l~~p-~NPtG~~~~~--------------~~l~~l~~~~~~~~~~li~Dea~~ 54 (289)
++..+ +++|| |.--+.-+++ +-=.+|.++|+++|+.+++|-.-+
T Consensus 255 ~~AdV-VItNPTH~AVALkYd~~~~~AP~VvAKG~d~~A~~Ir~iA~e~~VPiven~pLA 313 (356)
T PRK06298 255 KHASA-VVSNPKDIAVAIGYMPEKYKAPWIIAMGINLRAKRIIAEAEKYGVPIMRNVPLA 313 (356)
T ss_pred CCCcE-EEECCCceEEEeEeCCCCCCCCEEEEeeCcHHHHHHHHHHHHcCCCEEeCHHHH
Confidence 45555 78888 5433444432 233788899999999999997643
No 470
>COG0648 Nfo Endonuclease IV [DNA replication, recombination, and repair]
Probab=24.10 E-value=1.4e+02 Score=26.01 Aligned_cols=31 Identities=26% Similarity=0.328 Sum_probs=23.4
Q ss_pred CccCCCHHHHHHHHHHHHHcC-CEEEEecCCC
Q 044773 24 LGTTMSRNELNLLVNFITEKN-IHLISDEIYS 54 (289)
Q Consensus 24 tG~~~~~~~l~~l~~~~~~~~-~~li~Dea~~ 54 (289)
||.-..-++|+++++.+++.+ +-++.|-+|.
T Consensus 148 s~~g~~F~~L~eii~~~~~~~~igvCiDtcH~ 179 (280)
T COG0648 148 SGKGTQFGELAEIIDLIEEKERIGVCIDTCHA 179 (280)
T ss_pred CccccchhhHHHHHHhhcccCceEEEEEchhh
Confidence 344455668888888888876 8888888886
No 471
>TIGR00097 HMP-P_kinase phosphomethylpyrimidine kinase. This model represents phosphomethylpyrimidine kinase, the ThiD protein of thiamine biosynthesis. The protein is commonly observed within operons containing other thiamine biosynthesis genes. Numerous examples are fusion proteins with other thiamine-biosynthetic domains. Saccaromyces has three recent paralogs, two of which are isofunctional and score above the trusted cutoff. The third shows a longer branch length in a phylogenetic tree and scores below the trusted cutoff, as do putative second copies in a number of species.
Probab=23.88 E-value=89 Score=26.46 Aligned_cols=31 Identities=16% Similarity=0.220 Sum_probs=25.9
Q ss_pred CccCCCHHHHHHHHHHHHHcCC-EEEEecCCC
Q 044773 24 LGTTMSRNELNLLVNFITEKNI-HLISDEIYS 54 (289)
Q Consensus 24 tG~~~~~~~l~~l~~~~~~~~~-~li~Dea~~ 54 (289)
+|.+.+.+.++.+++++++++. .+++|-+..
T Consensus 73 iG~l~~~~~~~~i~~~~~~~~~~~vVlDPv~~ 104 (254)
T TIGR00097 73 TGMLASAEIVEAVARKLREYPVRPLVVDPVMV 104 (254)
T ss_pred ECCcCCHHHHHHHHHHHHhcCCCcEEECCccc
Confidence 4788888899999999999888 688987754
No 472
>TIGR02064 dsrA sulfite reductase, dissimilatory-type alpha subunit. This model describes the alpha subunit of sulfite reductase.
Probab=23.88 E-value=1e+02 Score=28.40 Aligned_cols=60 Identities=18% Similarity=0.140 Sum_probs=37.4
Q ss_pred CccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEe-cCCCCCccCCCCccChhhhh
Q 044773 11 KVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISD-EIYSGTVFSSPGFVSIMEIL 70 (289)
Q Consensus 11 ~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~D-ea~~~~~~~~~~~~~~~~~~ 70 (289)
..+..+..-++-|.|..++.+.|++|++++.+|+.-++-= ..-+.+.+.+.....+..+.
T Consensus 77 ~~~~~~tvRv~~P~G~~~tteqLR~LaDiaekYGsG~~~~tgstqdIiL~gv~~e~le~i~ 137 (402)
T TIGR02064 77 GVAEFHTVRVAQPSGKFYSTDYLRQLCDVWEKYGSGLTNFHGQTGDIVFLGTQTPQLQEIF 137 (402)
T ss_pred CcCeEEEEEEecCCCCCCCHHHHHHHHHHHHHhCCCEEEEeccccCEEEcCCCHHHHHHHH
Confidence 4445555556778999999999999999999997422111 22334445444433444433
No 473
>TIGR03793 TOMM_pelo TOMM propeptide domain. This model represents a domain that is conserved among a large number of putative thiazole/oxazole-modified microcins (TOMM). Oddly, most of this seqence region appears homologous to nitrile hydratase subunits. This family is expanded especially in Pelotomaculum thermopropionicum SI.
Probab=23.74 E-value=1.2e+02 Score=20.81 Aligned_cols=25 Identities=16% Similarity=0.248 Sum_probs=19.4
Q ss_pred ccEEEEeCCCCCCccCCCHHHHHHHH
Q 044773 12 VKGVLVTNPSNPLGTTMSRNELNLLV 37 (289)
Q Consensus 12 ~~~i~l~~p~NPtG~~~~~~~l~~l~ 37 (289)
+...++.=|.+|.| -+|.++|+.++
T Consensus 51 ~~~~~lVlP~~P~~-~lse~~L~~va 75 (77)
T TIGR03793 51 PTVLYLVLPVNPDI-ELTDEQLDAVA 75 (77)
T ss_pred CCeEEEEecCCCCC-CCCHHHHHHhh
Confidence 34456677889999 89999998774
No 474
>PRK09108 type III secretion system protein HrcU; Validated
Probab=23.65 E-value=70 Score=28.92 Aligned_cols=43 Identities=12% Similarity=0.140 Sum_probs=28.7
Q ss_pred CCccEEEEeCC-CCCCccCCCH--------------HHHHHHHHHHHHcCCEEEEecCC
Q 044773 10 LKVKGVLVTNP-SNPLGTTMSR--------------NELNLLVNFITEKNIHLISDEIY 53 (289)
Q Consensus 10 ~~~~~i~l~~p-~NPtG~~~~~--------------~~l~~l~~~~~~~~~~li~Dea~ 53 (289)
++..+ +++|| |.--+..+++ .-=.+|.++++++|+.+++|-.-
T Consensus 256 ~~Adv-VItNPTH~AVAL~Y~~~~~~AP~VvAKG~d~~A~~Ir~~A~e~~VPvven~pL 313 (353)
T PRK09108 256 ARANV-VVVNPTHYAVALRYAPDEHPLPRVIAKGVDDGALALRRHAHALGIPIVGNPPV 313 (353)
T ss_pred CCCcE-EEECCCceEEEeEeCCCCCCCCEEEEEeCcHHHHHHHHHHHHcCCCEEeCHHH
Confidence 45555 78888 4433333332 22378899999999999999664
No 475
>PTZ00106 60S ribosomal protein L30; Provisional
Probab=23.63 E-value=2.7e+02 Score=20.38 Aligned_cols=39 Identities=15% Similarity=0.088 Sum_probs=27.4
Q ss_pred HHHhhhCCCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEE
Q 044773 3 QLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLIS 49 (289)
Q Consensus 3 ~~~~~~~~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~ 49 (289)
.+++++. +.++|++.+ | .++...+.+..+|+.+++.++.
T Consensus 34 lkalk~g-kaklViiA~--D-----~~~~~kkki~~~~~~~~Vpv~~ 72 (108)
T PTZ00106 34 LKALRNG-KAKLVIISN--N-----CPPIRRSEIEYYAMLSKTGVHH 72 (108)
T ss_pred HHHHHcC-CeeEEEEeC--C-----CCHHHHHHHHHHHhhcCCCEEE
Confidence 3445554 788877764 2 4566689999999998887764
No 476
>PRK12568 glycogen branching enzyme; Provisional
Probab=23.51 E-value=1.4e+02 Score=29.95 Aligned_cols=30 Identities=17% Similarity=0.082 Sum_probs=26.7
Q ss_pred CCHHHHHHHHHHHHHcCCEEEEecCCCCCc
Q 044773 28 MSRNELNLLVNFITEKNIHLISDEIYSGTV 57 (289)
Q Consensus 28 ~~~~~l~~l~~~~~~~~~~li~Dea~~~~~ 57 (289)
-+.++++++++.|++.|+-||.|-++..+.
T Consensus 316 G~~~dfk~lV~~~H~~Gi~VIlD~V~nH~~ 345 (730)
T PRK12568 316 GSPDGFAQFVDACHRAGIGVILDWVSAHFP 345 (730)
T ss_pred CCHHHHHHHHHHHHHCCCEEEEEeccccCC
Confidence 467899999999999999999999998653
No 477
>PRK12468 flhB flagellar biosynthesis protein FlhB; Reviewed
Probab=23.43 E-value=75 Score=29.13 Aligned_cols=43 Identities=19% Similarity=0.176 Sum_probs=29.1
Q ss_pred CCccEEEEeCC-CCCCccCCCHH--------------HHHHHHHHHHHcCCEEEEecCC
Q 044773 10 LKVKGVLVTNP-SNPLGTTMSRN--------------ELNLLVNFITEKNIHLISDEIY 53 (289)
Q Consensus 10 ~~~~~i~l~~p-~NPtG~~~~~~--------------~l~~l~~~~~~~~~~li~Dea~ 53 (289)
++..+ +++|| |.--+.-+.++ -=.+|.++|+++|+.+++|-.-
T Consensus 261 ~~AdV-VItNPTH~AVALkY~~~~~~AP~VvAKG~d~~A~~Ir~~A~e~~VPiven~pL 318 (386)
T PRK12468 261 PKADV-IVTNPTHYAVALQYNESKMSAPKVLAKGAGAVALRIRELGAEHRIPLLEAPPL 318 (386)
T ss_pred CCCcE-EEECCCceEEEEEeCCCCCCCCEEEEeeCcHHHHHHHHHHHHcCCcEEeCHHH
Confidence 45555 77888 54334444322 2378889999999999999764
No 478
>PF07488 Glyco_hydro_67M: Glycosyl hydrolase family 67 middle domain; InterPro: IPR011100 Alpha-glucuronidases, components of an ensemble of enzymes central to the recycling of photosynthetic biomass, remove the alpha-1,2 linked 4-O-methyl glucuronic acid from xylans. This family represents the central catalytic domain of alpha-glucuronidase [].; GO: 0046559 alpha-glucuronidase activity, 0045493 xylan catabolic process, 0005576 extracellular region; PDB: 1MQP_A 1K9E_A 1MQQ_A 1L8N_A 1K9D_A 1MQR_A 1K9F_A 1GQL_A 1GQI_B 1GQJ_B ....
Probab=23.23 E-value=1.2e+02 Score=26.75 Aligned_cols=49 Identities=14% Similarity=0.230 Sum_probs=27.3
Q ss_pred HHHhhhCCCccEEEEeCCC-CCCccCCCHHH---HHHHHHHHHHcCCEEEEecCCC
Q 044773 3 QLAQKRHLKVKGVLVTNPS-NPLGTTMSRNE---LNLLVNFITEKNIHLISDEIYS 54 (289)
Q Consensus 3 ~~~~~~~~~~~~i~l~~p~-NPtG~~~~~~~---l~~l~~~~~~~~~~li~Dea~~ 54 (289)
.+++..- ++-+++++|.| ++ ..++.+. +++|+++.+.||+.+.+=--|+
T Consensus 63 ARllASi-GINgvvlNNVNa~~--~~Lt~~~l~~v~~lAdvfRpYGIkv~LSvnFa 115 (328)
T PF07488_consen 63 ARLLASI-GINGVVLNNVNANP--KLLTPEYLDKVARLADVFRPYGIKVYLSVNFA 115 (328)
T ss_dssp HHHHHHT-T--EEE-S-SS--C--GGGSTTTHHHHHHHHHHHHHTT-EEEEEE-TT
T ss_pred HHHHhhc-CCceEEecccccCh--hhcCHHHHHHHHHHHHHHhhcCCEEEEEeecc
Confidence 3445443 68889999985 44 6666554 4566666688998887755553
No 479
>TIGR01019 sucCoAalpha succinyl-CoA synthetase, alpha subunit. ATP citrate lyases appear to form an outgroup.
Probab=23.16 E-value=1.9e+02 Score=25.32 Aligned_cols=44 Identities=9% Similarity=0.124 Sum_probs=28.3
Q ss_pred hHHHhhhCCCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCC
Q 044773 2 YQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIY 53 (289)
Q Consensus 2 l~~~~~~~~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~ 53 (289)
++++.+ .++|.+++.+.. +++.+-++|.++++++|+.++==++.
T Consensus 80 l~e~~~--~Gvk~avIis~G------f~e~~~~~l~~~a~~~girilGPNc~ 123 (286)
T TIGR01019 80 IFEAID--AGIELIVCITEG------IPVHDMLKVKRYMEESGTRLIGPNCP 123 (286)
T ss_pred HHHHHH--CCCCEEEEECCC------CCHHHHHHHHHHHHHcCCEEECCCCc
Confidence 344444 357777776544 24445578999999999888744333
No 480
>COG1023 Gnd Predicted 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=23.05 E-value=2e+02 Score=24.71 Aligned_cols=44 Identities=9% Similarity=0.152 Sum_probs=31.6
Q ss_pred ChHHHhhhCCCccEEEEeCCC-CCCccCCCHHHHHHHHHHHHHcCCEEEEec
Q 044773 1 AYQLAQKRHLKVKGVLVTNPS-NPLGTTMSRNELNLLVNFITEKNIHLISDE 51 (289)
Q Consensus 1 ~l~~~~~~~~~~~~i~l~~p~-NPtG~~~~~~~l~~l~~~~~~~~~~li~De 51 (289)
++++.+.+-+.+|.|++.-|+ +||..+ ++++.....+-+ +|+|-
T Consensus 49 sl~el~~~L~~pr~vWlMvPag~it~~v-----i~~la~~L~~GD--ivIDG 93 (300)
T COG1023 49 SLDELVAKLSAPRIVWLMVPAGDITDAV-----IDDLAPLLSAGD--IVIDG 93 (300)
T ss_pred CHHHHHHhcCCCcEEEEEccCCCchHHH-----HHHHHhhcCCCC--EEEEC
Confidence 357788888899999999994 688776 777776665544 44454
No 481
>COG2257 Uncharacterized homolog of the cytoplasmic domain of flagellar protein FhlB [Function unknown]
Probab=22.95 E-value=58 Score=23.02 Aligned_cols=23 Identities=9% Similarity=0.195 Sum_probs=19.7
Q ss_pred HHHHHHHHHHcCCEEEEecCCCC
Q 044773 33 LNLLVNFITEKNIHLISDEIYSG 55 (289)
Q Consensus 33 l~~l~~~~~~~~~~li~Dea~~~ 55 (289)
-++|++.+++|++.+.+|..-..
T Consensus 34 Ae~II~~Ake~~Vpi~edp~Lv~ 56 (92)
T COG2257 34 AEKIIEKAKEHGVPIQEDPLLVE 56 (92)
T ss_pred HHHHHHHHHHcCCCcccCHHHHH
Confidence 58999999999999999976543
No 482
>PRK09505 malS alpha-amylase; Reviewed
Probab=22.83 E-value=1.1e+02 Score=30.39 Aligned_cols=29 Identities=21% Similarity=0.329 Sum_probs=25.7
Q ss_pred CHHHHHHHHHHHHHcCCEEEEecCCCCCc
Q 044773 29 SRNELNLLVNFITEKNIHLISDEIYSGTV 57 (289)
Q Consensus 29 ~~~~l~~l~~~~~~~~~~li~Dea~~~~~ 57 (289)
+.++++++++-|+++|+.||.|-+..+..
T Consensus 290 t~~dfk~Lv~~aH~~Gi~VilD~V~NH~~ 318 (683)
T PRK09505 290 TEADLRTLVDEAHQRGIRILFDVVMNHTG 318 (683)
T ss_pred CHHHHHHHHHHHHHCCCEEEEEECcCCCc
Confidence 56799999999999999999999986554
No 483
>PRK00014 ribB 3,4-dihydroxy-2-butanone 4-phosphate synthase; Provisional
Probab=22.78 E-value=1.2e+02 Score=25.53 Aligned_cols=33 Identities=15% Similarity=0.174 Sum_probs=25.4
Q ss_pred EEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEE
Q 044773 14 GVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLIS 49 (289)
Q Consensus 14 ~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~ 49 (289)
+.++|.--|+.|.+++ ++++.+++++|++.+|.
T Consensus 174 ~~vicEil~~dG~ma~---~~~l~~fA~~~~l~iis 206 (230)
T PRK00014 174 AGVLCELMNADGTMMR---GASLERYAAKEGLVALA 206 (230)
T ss_pred eEEEEEEeCCCCCccC---HHHHHHHHHHcCCcEEE
Confidence 3456656778899999 78888888999887754
No 484
>PRK08156 type III secretion system protein SpaS; Validated
Probab=22.76 E-value=68 Score=29.08 Aligned_cols=43 Identities=12% Similarity=0.203 Sum_probs=28.9
Q ss_pred CCccEEEEeCC-CCCCccCCCHH--------------HHHHHHHHHHHcCCEEEEecCC
Q 044773 10 LKVKGVLVTNP-SNPLGTTMSRN--------------ELNLLVNFITEKNIHLISDEIY 53 (289)
Q Consensus 10 ~~~~~i~l~~p-~NPtG~~~~~~--------------~l~~l~~~~~~~~~~li~Dea~ 53 (289)
++..+ +++|| |.--+..++++ -=.+|.++|+++|+.+++|-.-
T Consensus 249 p~AdV-VItNPTH~AVALkYd~~~~~AP~VvAKG~d~~A~~IreiA~e~~VPiven~pL 306 (361)
T PRK08156 249 RNSRL-IVANPTHIAIGIYFNPELAPIPFISVRETNQRALAVRAYAEKVGVPVVRDIKL 306 (361)
T ss_pred CCCcE-EEECCCeEEEEEEecCCCCCCCEEEEecCcHHHHHHHHHHHHCCCCEeeCHHH
Confidence 45555 78888 44333333322 2378889999999999999764
No 485
>PRK05678 succinyl-CoA synthetase subunit alpha; Validated
Probab=22.69 E-value=1.9e+02 Score=25.32 Aligned_cols=44 Identities=9% Similarity=0.049 Sum_probs=28.3
Q ss_pred hHHHhhhCCCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCC
Q 044773 2 YQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIY 53 (289)
Q Consensus 2 l~~~~~~~~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~ 53 (289)
+++... .++|.+++.+-.. +.++-++|.++++++|+.++==++.
T Consensus 82 l~e~~~--~gvk~avI~s~Gf------~~~~~~~l~~~a~~~girvlGPNc~ 125 (291)
T PRK05678 82 ILEAID--AGIDLIVCITEGI------PVLDMLEVKAYLERKKTRLIGPNCP 125 (291)
T ss_pred HHHHHH--CCCCEEEEECCCC------CHHHHHHHHHHHHHcCCEEECCCCC
Confidence 344445 3578777765432 3444568999999999888744443
No 486
>TIGR02456 treS_nterm trehalose synthase. Trehalose synthase interconverts maltose and alpha, alpha-trehalose by transglucosylation. This is one of at least three mechanisms for biosynthesis of trehalose, an important and widespread compatible solute. However, it is not driven by phosphate activation of sugars and its physiological role may tend toward trehalose degradation. This view is accentuated by numerous examples of fusion to a probable maltokinase domain. The sequence region described by this model is found both as the whole of a trehalose synthase and as the N-terminal region of a larger fusion protein that includes trehalose synthase activity. Several of these fused trehalose synthases have a domain homologous to proteins with maltokinase activity from Actinoplanes missouriensis and Streptomyces coelicolor (PubMed:15378530).
Probab=22.44 E-value=1.1e+02 Score=29.32 Aligned_cols=28 Identities=14% Similarity=0.271 Sum_probs=24.7
Q ss_pred CHHHHHHHHHHHHHcCCEEEEecCCCCC
Q 044773 29 SRNELNLLVNFITEKNIHLISDEIYSGT 56 (289)
Q Consensus 29 ~~~~l~~l~~~~~~~~~~li~Dea~~~~ 56 (289)
+.+++++|++-|+++|+.||.|-+..+.
T Consensus 74 t~~df~~Lv~~ah~~Gi~vilD~V~NH~ 101 (539)
T TIGR02456 74 TIDDFKDFVDEAHARGMRVIIDLVLNHT 101 (539)
T ss_pred CHHHHHHHHHHHHHCCCEEEEEeccCcC
Confidence 3579999999999999999999988754
No 487
>cd07018 S49_SppA_67K_type Signal peptide peptidase A (SppA) 67K type, a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV) 67K type: SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Members in this subfamily contain an amino-terminal domain in addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members (sometimes referred to as 67K type), similar to E. coli and Arabidopsis thaliana SppA peptidases. Unlike the eukaryotic functional homologs that are proposed to be aspartic proteases, site-directed mutagenesis and sequence analysis have shown that members in this subfamily, mostly bacterial, are serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys
Probab=22.42 E-value=1.8e+02 Score=24.10 Aligned_cols=41 Identities=15% Similarity=0.189 Sum_probs=24.7
Q ss_pred hhCCCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEE
Q 044773 7 KRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLI 48 (289)
Q Consensus 7 ~~~~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li 48 (289)
..++++++|++.- +.|.|.....+++.+.++..++.+..||
T Consensus 42 ~~d~~ik~vvL~~-~s~gg~~~~~~el~~~i~~~~~~~kpVi 82 (222)
T cd07018 42 AEDDRIKGIVLDL-DGLSGGLAKLEELRQALERFRASGKPVI 82 (222)
T ss_pred hcCCCeEEEEEEC-CCCCCCHHHHHHHHHHHHHHHHhCCeEE
Confidence 4456899987774 6677765555555555544454444443
No 488
>TIGR01404 FlhB_rel_III type III secretion protein, YscU/HrpY family. This model represents one of several families of proteins related to bacterial flagellar biosynthesis proteins and involved in bacterial type III protein secretion systems. This family is homologous to, but distinguished from, flagellar biosynthetic protein FlhB (TIGRFAMs model TIGR00328). This model may not identify all type III secretion system FlhB homologs.
Probab=22.33 E-value=71 Score=28.76 Aligned_cols=21 Identities=14% Similarity=0.143 Sum_probs=18.0
Q ss_pred HHHHHHHHHHcCCEEEEecCC
Q 044773 33 LNLLVNFITEKNIHLISDEIY 53 (289)
Q Consensus 33 l~~l~~~~~~~~~~li~Dea~ 53 (289)
=.+|.++|+++|+.+++|-.-
T Consensus 290 A~~Ir~iA~e~~VPiven~pL 310 (342)
T TIGR01404 290 ALAVRAYAEEAGIPVVRDIPL 310 (342)
T ss_pred HHHHHHHHHHcCCCEeeCHHH
Confidence 378889999999999999764
No 489
>TIGR00789 flhB_rel flhB C-terminus-related protein. This model describes a short protein (80-93 residues) homologous to the C-terminus of the flagellar biosynthetic protein FlhB. It is found so far only in species that also have FlhB. In a phylogenetic tree based on alignment of both this family and the homologous region of FlhB and its homologs, the members of this family form a monophyletic set.
Probab=22.31 E-value=84 Score=21.81 Aligned_cols=24 Identities=8% Similarity=0.214 Sum_probs=20.2
Q ss_pred HHHHHHHHHHcCCEEEEecCCCCC
Q 044773 33 LNLLVNFITEKNIHLISDEIYSGT 56 (289)
Q Consensus 33 l~~l~~~~~~~~~~li~Dea~~~~ 56 (289)
=++|.++++++|+.++.|..-...
T Consensus 29 A~~I~~~A~e~~VPi~~~~~LAr~ 52 (82)
T TIGR00789 29 AERIIEIAKKHGIPIVEDPDLVDV 52 (82)
T ss_pred HHHHHHHHHHcCCCEEeCHHHHHH
Confidence 478999999999999999876543
No 490
>TIGR02403 trehalose_treC alpha,alpha-phosphotrehalase. Trehalose is a glucose disaccharide that serves in many biological systems as a compatible solute for protection against hyperosmotic and thermal stress. This family describes trehalose-6-phosphate hydrolase, product of the treC (or treA) gene, which is often found together with a trehalose uptake transporter and a trehalose operon repressor.
Probab=22.13 E-value=1.1e+02 Score=29.34 Aligned_cols=28 Identities=21% Similarity=0.411 Sum_probs=24.9
Q ss_pred CHHHHHHHHHHHHHcCCEEEEecCCCCC
Q 044773 29 SRNELNLLVNFITEKNIHLISDEIYSGT 56 (289)
Q Consensus 29 ~~~~l~~l~~~~~~~~~~li~Dea~~~~ 56 (289)
+.++++++++.|+++|+.||.|-+..+.
T Consensus 73 t~~~~~~lv~~ah~~gi~vilD~v~NH~ 100 (543)
T TIGR02403 73 TMADFEELVSEAKKRNIKIMLDMVFNHT 100 (543)
T ss_pred CHHHHHHHHHHHHHCCCEEEEEECcccc
Confidence 5579999999999999999999887654
No 491
>PRK00910 ribB 3,4-dihydroxy-2-butanone 4-phosphate synthase; Provisional
Probab=22.08 E-value=1.4e+02 Score=25.04 Aligned_cols=33 Identities=18% Similarity=0.284 Sum_probs=25.2
Q ss_pred EEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEE
Q 044773 14 GVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLIS 49 (289)
Q Consensus 14 ~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~ 49 (289)
+.++|.--|+.|.+++ ++++.+++++|++.+|.
T Consensus 170 ~~vicEil~~dG~ma~---~~~l~~fA~~h~l~~is 202 (218)
T PRK00910 170 AGVLCELTNPDGTMAK---TPEIIAFGKLHNMPVLT 202 (218)
T ss_pred eEEEEEEecCCCCcCC---HHHHHHHHHHcCCcEEE
Confidence 4466666677899999 77788888999887754
No 492
>PF06462 Hyd_WA: Propeller; InterPro: IPR006624 Tectonins I and II are two dominant proteins in the nuclei and nuclear matrix from plasmodia of Physarum polycephalum (Slime mold) which encode 217 and 353 amino acids, respectively. Tectonin I is homologous to the C-terminal two-thirds of tectonin II. Both proteins contain six tandem repeats that are each 33-37 amino acids in length and define a new consensus sequence. Homologous repeats are found in L-6, a bacterial lipopolysaccharide-binding lectin from horseshoe crab hemocytes. The repetitive sequences of the tectonins and L-6 are reminiscent of the WD repeats of the beta-subunit of G proteins, suggesting that they form beta-propeller domains. The tectonins may be lectins that function as part of a transmembrane signalling complex during phagocytosis [].
Probab=22.06 E-value=52 Score=18.21 Aligned_cols=12 Identities=50% Similarity=0.792 Sum_probs=8.9
Q ss_pred eCCCCCCccCCC
Q 044773 18 TNPSNPLGTTMS 29 (289)
Q Consensus 18 ~~p~NPtG~~~~ 29 (289)
.+|+||+|..|.
T Consensus 18 is~~~P~G~~W~ 29 (32)
T PF06462_consen 18 ISPSNPEGTSWE 29 (32)
T ss_pred CCCCCCCCCCcE
Confidence 356899998763
No 493
>TIGR00328 flhB flagellar biosynthetic protein FlhB. FlhB and its functionally equivalent orthologs, from among a larger superfamily of proteins involved in type III protein export systems, are specifically involved in flagellar protein export. The seed members are restricted and the trusted cutoff is set high such that the proteins gathered by this model play roles specifically related to flagellar structures. Full-length homologs scoring below the trusted cutoff are involved in peptide export but not necessarily in the creation of flagella.
Probab=21.78 E-value=1e+02 Score=27.86 Aligned_cols=44 Identities=14% Similarity=0.203 Sum_probs=29.4
Q ss_pred CCccEEEEeCC-CCCCccCCCH--------------HHHHHHHHHHHHcCCEEEEecCCC
Q 044773 10 LKVKGVLVTNP-SNPLGTTMSR--------------NELNLLVNFITEKNIHLISDEIYS 54 (289)
Q Consensus 10 ~~~~~i~l~~p-~NPtG~~~~~--------------~~l~~l~~~~~~~~~~li~Dea~~ 54 (289)
++..+ +++|| |.--+..+++ .-=.+|.++|+++|+.+++|-.-.
T Consensus 254 ~~AdV-VItNPTH~AVal~Y~~~~~~aP~vvakG~~~~A~~I~~~A~~~~vPi~~~~~LA 312 (347)
T TIGR00328 254 PKADV-VITNPTHYAVALKYDPGKMPAPVVVAKGVDELALKIKEIARENNVPIVENPPLA 312 (347)
T ss_pred CCCcE-EEECCCceEEEeEeCCCCCCCCEEEEeeCcHHHHHHHHHHHHcCCCEEeCHHHH
Confidence 45555 77788 4433333332 223689999999999999997654
No 494
>cd06565 GH20_GcnA-like Glycosyl hydrolase family 20 (GH20) catalytic domain of N-acetyl-beta-D-glucosaminidase (GcnA, also known as BhsA) and related proteins. GcnA is an exoglucosidase which cleaves N-acetyl-beta-D-galactosamine (NAG) and N-acetyl-beta-D-galactosamine residues from 4-methylumbelliferylated (4MU) substrates, as well as cleaving NAG from chito-oligosaccharides (i.e. NAG polymers). In contrast, sulfated forms of the substrate are unable to be cleaved and act instead as mild competitive inhibitors. Additionally, the enzyme is known to be poisoned by several first-row transition metals as well as by mercury. GcnA forms a homodimer with subunits comprised of three domains, an N-terminal zincin-like domain, this central catalytic GH20 domain, and a C-terminal alpha helical domain. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=21.64 E-value=1e+02 Score=27.12 Aligned_cols=25 Identities=16% Similarity=0.359 Sum_probs=22.2
Q ss_pred ccCCCHHHHHHHHHHHHHcCCEEEE
Q 044773 25 GTTMSRNELNLLVNFITEKNIHLIS 49 (289)
Q Consensus 25 G~~~~~~~l~~l~~~~~~~~~~li~ 49 (289)
+-.++.+++++|++.|+++++-||=
T Consensus 54 ~~~yT~~ei~ei~~yA~~~gI~vIP 78 (301)
T cd06565 54 RGAYTKEEIREIDDYAAELGIEVIP 78 (301)
T ss_pred CCCcCHHHHHHHHHHHHHcCCEEEe
Confidence 4569999999999999999988875
No 495
>TIGR00250 RNAse_H_YqgF RNAse H-fold protein YqgF. This protein family, which exhibits an RNAse H fold in crystal structure, has been proposed as a putative Holliday junction resolvase, an alternate to RuvC.
Probab=21.56 E-value=3.6e+02 Score=20.33 Aligned_cols=53 Identities=19% Similarity=0.069 Sum_probs=31.6
Q ss_pred hHHHhhhCCCccEEEEeCCCCCCccCCCHH-HHHHHHHHH-HHcC-CEEEEecCCCC
Q 044773 2 YQLAQKRHLKVKGVLVTNPSNPLGTTMSRN-ELNLLVNFI-TEKN-IHLISDEIYSG 55 (289)
Q Consensus 2 l~~~~~~~~~~~~i~l~~p~NPtG~~~~~~-~l~~l~~~~-~~~~-~~li~Dea~~~ 55 (289)
+++..+.. ++..|++--|-|+.|..-+.. ..+++++.. ++++ -+.++||-++.
T Consensus 40 l~~~i~~~-~~~~iVvGlP~~~dG~~~~~a~~v~~f~~~L~~~~~~~v~~~DEr~TT 95 (130)
T TIGR00250 40 IEELLKEW-TPDKIVVGLPLNMDGTEGPLTERAQKFANRLEGRFGVPVVLWDERLST 95 (130)
T ss_pred HHHHHHHc-CCCEEEEeccCCCCcCcCHHHHHHHHHHHHHHHHhCCCEEEEcCCcCH
Confidence 34555565 678889999988778764422 223343333 2234 35678888764
No 496
>PRK10933 trehalose-6-phosphate hydrolase; Provisional
Probab=21.52 E-value=1.2e+02 Score=29.25 Aligned_cols=28 Identities=21% Similarity=0.417 Sum_probs=25.1
Q ss_pred CHHHHHHHHHHHHHcCCEEEEecCCCCC
Q 044773 29 SRNELNLLVNFITEKNIHLISDEIYSGT 56 (289)
Q Consensus 29 ~~~~l~~l~~~~~~~~~~li~Dea~~~~ 56 (289)
+.++++++++.|+++|+.||+|-+..+.
T Consensus 79 t~~d~~~lv~~~h~~gi~vilD~V~NH~ 106 (551)
T PRK10933 79 TLDDFDELVAQAKSRGIRIILDMVFNHT 106 (551)
T ss_pred CHHHHHHHHHHHHHCCCEEEEEECCCCc
Confidence 5678999999999999999999998754
No 497
>cd01019 ZnuA Zinc binding protein ZnuA. These proteins have been shown to function as initial receptors in the ABC uptake of Zn2+. They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. They are comprised of two globular subdomains connected by a single helix and bind their specific ligands in the cleft between these domains. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=21.42 E-value=4.9e+02 Score=22.51 Aligned_cols=105 Identities=8% Similarity=-0.032 Sum_probs=0.0
Q ss_pred cccCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHhc--CCceecCCceEEEEEecCccccCCChhhH
Q 044773 119 SSFGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEKA--GISCLKSNAGLFCWVDMRHLLSSNTFEAE 196 (289)
Q Consensus 119 ~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~--g~~~~~~~~g~~~~i~~~~~~~~~~~~~~ 196 (289)
....+.++.....++..+.+. +.+.--+..+.|++|.+.+.+.|+++ .+.-.-....--.++-...
T Consensus 120 dPHiWldp~n~~~~a~~I~~~--L~~~dP~~~~~y~~N~~~~~~~L~~l~~~~~~~~~~~~~~~~v~~H~---------- 187 (286)
T cd01019 120 DPHLWLSPENAAEVAQAVAEK--LSALDPDNAATYAANLEAFNARLAELDATIKERLAPVKTKPFFVFHD---------- 187 (286)
T ss_pred CCccCCCHHHHHHHHHHHHHH--HHHHCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCeEEEecc----------
Q ss_pred HHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEEecCCHHHHHHHHHHHHH
Q 044773 197 MELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKLSMQRLKA 246 (289)
Q Consensus 197 ~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ris~~~~~~e~l~~~l~~l~~ 246 (289)
.+.++++++|+-+.+-....+..+ +++.++.++++.+++
T Consensus 188 --af~Yl~~~~gl~~~~~~~~~~~~e---------ps~~~l~~l~~~ik~ 226 (286)
T cd01019 188 --AYGYFEKRYGLTQAGVFTIDPEID---------PGAKRLAKIRKEIKE 226 (286)
T ss_pred --cHHHHHHHcCCceeeeecCCCCCC---------CCHHHHHHHHHHHHH
No 498
>PRK00083 frr ribosome recycling factor; Reviewed
Probab=21.34 E-value=4.5e+02 Score=21.31 Aligned_cols=51 Identities=14% Similarity=0.257 Sum_probs=37.5
Q ss_pred HHHHHHhcCeEEeCCCCCCCCCCCeEEEEEecCCHHHHHHHHHHHHHHHHHHHHhh
Q 044773 200 WKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKLSMQRLKAFVDSITTTL 255 (289)
Q Consensus 200 ~~~ll~~~gi~v~pg~~f~~~~~~~~Ris~~~~~~e~l~~~l~~l~~~l~~~~~~~ 255 (289)
....+...++.+.|.. ....+|+.+..+|+|.-++++..++...++....+
T Consensus 78 I~kAI~~s~lgl~P~~-----dg~~Iri~iP~lT~E~R~elvK~~k~~~E~aKv~i 128 (185)
T PRK00083 78 IEKAIRASDLGLNPSN-----DGTVIRLPIPPLTEERRKELVKQVKKEAEEAKVAI 128 (185)
T ss_pred HHHHHHHCCCCCCccc-----CCCEEEecCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333445577777642 34689999987899999999999999988866544
No 499
>TIGR00608 radc DNA repair protein radc. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=21.31 E-value=3e+02 Score=23.01 Aligned_cols=43 Identities=19% Similarity=0.307 Sum_probs=22.3
Q ss_pred hHHHhhhCCCccEEEEeCCCCCCccCC-CHHHH---HHHHHHHHHcCCEE
Q 044773 2 YQLAQKRHLKVKGVLVTNPSNPLGTTM-SRNEL---NLLVNFITEKNIHL 47 (289)
Q Consensus 2 l~~~~~~~~~~~~i~l~~p~NPtG~~~-~~~~l---~~l~~~~~~~~~~l 47 (289)
+++++..+ ...|++.+ |.|+|... |.+++ ++|.+.|+--|+.+
T Consensus 152 ~~~Al~~~--A~~vIlaH-NHPSG~~~PS~~Di~~T~~l~~a~~~lgI~l 198 (218)
T TIGR00608 152 FKEALKLS--ASALILAH-NHPSGEPSPSQEDILITERLRKAAELLGIEL 198 (218)
T ss_pred HHHHHHhh--CCeEEEEe-ecCCCCCCCCHHHHHHHHHHHHHHHhCCCEE
Confidence 35566655 44444443 34666554 55565 45555555545433
No 500
>TIGR00496 frr ribosome recycling factor. This model finds only eubacterial proteins. Mitochondrial and/or chloroplast forms might be expected but are not currently known. This protein was previously called ribosome releasing factor. By releasing ribosomes from mRNA at the end of protein biosynthesis, it prevents inappropriate translation from 3-prime regions of the mRNA and frees the ribosome for new rounds of translation. EGAD|53116|YHR038W is part of the frr superfamily.
Probab=21.24 E-value=4.3e+02 Score=21.23 Aligned_cols=52 Identities=17% Similarity=0.320 Sum_probs=37.9
Q ss_pred HHHHHHhcCeEEeCCCCCCCCCCCeEEEEEecCCHHHHHHHHHHHHHHHHHHHHhhh
Q 044773 200 WKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKLSMQRLKAFVDSITTTLH 256 (289)
Q Consensus 200 ~~~ll~~~gi~v~pg~~f~~~~~~~~Ris~~~~~~e~l~~~l~~l~~~l~~~~~~~~ 256 (289)
....+...++.+.|. .....+|+.+..+|+|.-++++..++...++....+.
T Consensus 69 I~kAI~~s~lglnP~-----~dg~~Iri~iP~lT~E~RkelvK~~k~~~E~aKv~iR 120 (176)
T TIGR00496 69 IEKAIQRSDLGLNPN-----NDGSVIRVNFPPLTEERRKELVKHAKKIAEQAKVAVR 120 (176)
T ss_pred HHHHHHHCCCCCCcc-----cCCCEEEecCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344667777764 2346899999778999999999999999887665443
Done!