BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 044777
         (513 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1GVN|B Chain B, Crystal Structure Of The Plasmid Maintenance System
           EpsilonZETA: MEACHNISM OF TOXIN INACTIVATION AND TOXIN
           Function
 pdb|1GVN|D Chain D, Crystal Structure Of The Plasmid Maintenance System
           EpsilonZETA: MEACHNISM OF TOXIN INACTIVATION AND TOXIN
           Function
 pdb|3Q8X|B Chain B, Structure Of A Toxin-Antitoxin System Bound To Its
           Substrate
 pdb|3Q8X|D Chain D, Structure Of A Toxin-Antitoxin System Bound To Its
           Substrate
          Length = 287

 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 38/137 (27%), Positives = 62/137 (45%), Gaps = 11/137 (8%)

Query: 214 SPVLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADAFKESDVIYRALSSRSHVD 273
           SP    +GG  G+GK+++   I +E       GN +VI+ D FK+    +  L      D
Sbjct: 32  SPTAFLLGGQPGSGKTSLRSAIFEE-----TQGNVIVIDNDTFKQQHPNFDELVKLYEKD 86

Query: 274 MLQTAELVHQSSTDAASSLLVTALNEGRDVIMDGTLSWVPFVVQTITM--ARNVHRHRYR 331
           +++         T+A  S L    ++G +++++GT       +QT TM  A+      Y 
Sbjct: 87  VVKHVTPYSNRMTEAIISRLS---DQGYNLVIEGTGRTTDVPIQTATMLQAKGYETKMYV 143

Query: 332 MGVGYKKAEDGTVIENY 348
           M V    +  GT IE Y
Sbjct: 144 MAVPKINSYLGT-IERY 159


>pdb|2P5T|B Chain B, Molecular And Structural Characterization Of The Pezat
           Chromosomal Toxin-Antitoxin System Of The Human Pathogen
           Streptococcus Pneumoniae
 pdb|2P5T|D Chain D, Molecular And Structural Characterization Of The Pezat
           Chromosomal Toxin-Antitoxin System Of The Human Pathogen
           Streptococcus Pneumoniae
 pdb|2P5T|F Chain F, Molecular And Structural Characterization Of The Pezat
           Chromosomal Toxin-Antitoxin System Of The Human Pathogen
           Streptococcus Pneumoniae
 pdb|2P5T|H Chain H, Molecular And Structural Characterization Of The Pezat
           Chromosomal Toxin-Antitoxin System Of The Human Pathogen
           Streptococcus Pneumoniae
          Length = 253

 Score = 42.7 bits (99), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 29/112 (25%), Positives = 52/112 (46%), Gaps = 8/112 (7%)

Query: 213 RSPVLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADAFKESDVIYRALSSRSHV 272
           + P+ + +GG  GAGK+T+ +   KE       GN V+I+ D+F+     Y  L      
Sbjct: 30  KQPIAILLGGQSGAGKTTIHRIKQKE-----FQGNIVIIDGDSFRSQHPHYLELQQEYGK 84

Query: 273 DMLQTAELVHQSSTDAASSLLVTALNEGRDVIMDGTLSWVPFVVQTITMARN 324
           D   + E     +     SL+    + G +++++GTL  V    +T  + +N
Sbjct: 85  D---SVEYTKDFAGKMVESLVTKLSSLGYNLLIEGTLRTVDVPKKTAQLLKN 133


>pdb|2OGS|A Chain A, Crystal Structure Of The Geobacillus Stearothermophilus
           Carboxylesterase Est55 At Ph 6.2
          Length = 498

 Score = 30.4 bits (67), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 17/53 (32%), Positives = 28/53 (52%), Gaps = 6/53 (11%)

Query: 180 VFTTLVEEMKAMGLAPNDDSQCTEVMAPVALGDRSPVLLFMGGG---MGAGKS 229
           +F+ L+  M     AP++D     + +P A G + PVL ++ GG    G+G S
Sbjct: 68  IFSGLLGRMSE---APSEDGLYLNIWSPAADGKKRPVLFWIHGGAFLFGSGSS 117


>pdb|2OGT|A Chain A, Crystal Structure Of The Geobacillus Stearothermophilus
           Carboxylesterase Est55 At Ph 6.8
          Length = 498

 Score = 30.4 bits (67), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 17/53 (32%), Positives = 28/53 (52%), Gaps = 6/53 (11%)

Query: 180 VFTTLVEEMKAMGLAPNDDSQCTEVMAPVALGDRSPVLLFMGGG---MGAGKS 229
           +F+ L+  M     AP++D     + +P A G + PVL ++ GG    G+G S
Sbjct: 68  IFSGLLGRMSE---APSEDGLYLNIWSPAADGKKRPVLFWIHGGAFLFGSGSS 117


>pdb|3G9D|A Chain A, Crystal Structure Glycohydrolase
 pdb|3G9D|B Chain B, Crystal Structure Glycohydrolase
 pdb|3O5T|A Chain A, Structure Of Drag-Glnz Complex With Adp
          Length = 297

 Score = 28.5 bits (62), Expect = 10.0,   Method: Compositional matrix adjust.
 Identities = 19/61 (31%), Positives = 32/61 (52%), Gaps = 5/61 (8%)

Query: 263 YRALSSRSHVDMLQTAELVHQSSTDAASSLLVTALNEGRDV----IMDGTLSWVPFVVQT 318
           YR L++   VD +QT  + +   TD+  S +V  +N+G D      + G L+   + V+T
Sbjct: 205 YRGLATAYIVDTMQTV-MHYYFQTDSVESCVVETVNQGGDADTTGAIAGMLAGATYGVET 263

Query: 319 I 319
           I
Sbjct: 264 I 264


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.320    0.134    0.390 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,214,737
Number of Sequences: 62578
Number of extensions: 568167
Number of successful extensions: 1391
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 1389
Number of HSP's gapped (non-prelim): 6
length of query: 513
length of database: 14,973,337
effective HSP length: 103
effective length of query: 410
effective length of database: 8,527,803
effective search space: 3496399230
effective search space used: 3496399230
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (25.4 bits)