Query 044777
Match_columns 513
No_of_seqs 293 out of 1051
Neff 4.9
Searched_HMMs 46136
Date Fri Mar 29 06:40:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044777.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/044777hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG4185 Uncharacterized protei 100.0 3.3E-31 7.1E-36 247.3 16.5 172 214-446 1-173 (187)
2 PF06414 Zeta_toxin: Zeta toxi 100.0 8.5E-29 1.8E-33 235.7 15.8 173 210-429 10-190 (199)
3 PF13671 AAA_33: AAA domain; P 99.6 4.2E-15 9E-20 132.0 11.5 137 217-407 1-139 (143)
4 PHA02530 pseT polynucleotide k 99.6 1.9E-14 4E-19 144.1 15.7 143 214-411 1-143 (300)
5 COG0552 FtsY Signal recognitio 99.5 3.2E-13 6.9E-18 139.3 12.6 184 81-308 32-229 (340)
6 PRK06762 hypothetical protein; 99.5 4.8E-13 1E-17 123.0 11.4 133 214-407 1-133 (166)
7 TIGR01663 PNK-3'Pase polynucle 99.4 1.3E-12 2.8E-17 142.7 14.0 108 212-393 366-473 (526)
8 TIGR03574 selen_PSTK L-seryl-t 99.4 7.4E-12 1.6E-16 123.3 13.0 132 217-408 1-132 (249)
9 TIGR01313 therm_gnt_kin carboh 99.3 4.6E-11 1E-15 109.5 15.1 148 218-429 1-148 (163)
10 cd02021 GntK Gluconate kinase 99.3 4.3E-11 9.4E-16 108.1 14.3 132 217-406 1-133 (150)
11 PRK10416 signal recognition pa 99.3 2.3E-11 5E-16 125.5 13.2 139 82-258 16-155 (318)
12 COG0645 Predicted kinase [Gene 99.2 5.7E-11 1.2E-15 112.6 11.1 122 215-389 1-125 (170)
13 PRK12339 2-phosphoglycerate ki 99.2 4E-10 8.8E-15 108.9 15.5 143 214-409 2-161 (197)
14 cd00227 CPT Chloramphenicol (C 99.2 2.1E-10 4.6E-15 107.1 12.1 127 215-388 2-131 (175)
15 COG4639 Predicted kinase [Gene 99.2 3.7E-10 8E-15 106.1 12.3 131 214-407 1-132 (168)
16 PRK12337 2-phosphoglycerate ki 99.1 3.7E-09 7.9E-14 114.1 19.1 206 139-407 188-423 (475)
17 TIGR01359 UMP_CMP_kin_fam UMP- 99.1 2.1E-09 4.6E-14 100.0 14.7 159 217-429 1-169 (183)
18 cd02027 APSK Adenosine 5'-phos 99.0 2.4E-09 5.1E-14 98.5 11.0 115 217-386 1-115 (149)
19 PRK14527 adenylate kinase; Pro 99.0 3.1E-09 6.7E-14 100.6 11.4 150 213-416 4-161 (191)
20 PRK06761 hypothetical protein; 99.0 4.8E-09 1E-13 107.0 12.2 40 393-432 112-151 (282)
21 PRK14531 adenylate kinase; Pro 99.0 9.9E-09 2.2E-13 96.9 13.0 140 215-416 2-153 (183)
22 PRK14532 adenylate kinase; Pro 98.9 1.3E-08 2.7E-13 95.7 13.5 137 218-412 3-152 (188)
23 PLN02200 adenylate kinase fami 98.9 1.5E-08 3.3E-13 100.3 14.1 161 205-428 33-208 (234)
24 TIGR00455 apsK adenylylsulfate 98.9 1.4E-08 3.1E-13 95.3 12.3 95 213-320 16-110 (184)
25 PF07931 CPT: Chloramphenicol 98.9 1.2E-08 2.7E-13 97.3 11.6 126 216-388 2-130 (174)
26 PRK05541 adenylylsulfate kinas 98.8 2.2E-08 4.7E-13 93.3 10.9 85 212-310 4-88 (176)
27 PRK04220 2-phosphoglycerate ki 98.8 3.7E-07 8E-12 94.1 20.1 98 214-317 91-207 (301)
28 PRK06696 uridine kinase; Valid 98.8 1.7E-08 3.6E-13 98.3 9.8 43 213-257 20-62 (223)
29 TIGR01425 SRP54_euk signal rec 98.8 3.5E-08 7.6E-13 105.9 12.8 123 101-258 13-141 (429)
30 cd02020 CMPK Cytidine monophos 98.8 7.5E-08 1.6E-12 85.5 12.4 125 217-410 1-125 (147)
31 PRK10867 signal recognition pa 98.8 2.5E-08 5.4E-13 107.2 10.7 124 101-258 13-142 (433)
32 PF08433 KTI12: Chromatin asso 98.8 6.4E-08 1.4E-12 98.1 12.7 135 217-409 3-138 (270)
33 PRK00279 adk adenylate kinase; 98.7 1E-07 2.3E-12 92.0 12.7 146 218-417 3-184 (215)
34 TIGR00064 ftsY signal recognit 98.7 8.3E-08 1.8E-12 97.1 12.4 159 115-312 3-167 (272)
35 TIGR01360 aden_kin_iso1 adenyl 98.7 1.7E-07 3.7E-12 86.9 13.5 139 216-411 4-151 (188)
36 COG4088 Predicted nucleotide k 98.7 9.1E-08 2E-12 94.1 11.5 132 217-410 3-140 (261)
37 TIGR01351 adk adenylate kinase 98.7 2E-07 4.2E-12 89.8 13.3 140 218-417 2-181 (210)
38 TIGR00959 ffh signal recogniti 98.7 7.2E-08 1.6E-12 103.5 11.3 127 102-258 13-141 (428)
39 cd01428 ADK Adenylate kinase ( 98.7 3.4E-07 7.4E-12 85.5 14.2 146 218-417 2-174 (194)
40 PRK03846 adenylylsulfate kinas 98.7 2.4E-07 5.3E-12 88.5 12.5 95 213-320 22-116 (198)
41 PRK00889 adenylylsulfate kinas 98.7 2E-07 4.4E-12 86.7 11.4 89 214-315 3-91 (175)
42 PF01583 APS_kinase: Adenylyls 98.6 4.2E-07 9.1E-12 85.5 13.1 117 214-385 1-117 (156)
43 PRK01184 hypothetical protein; 98.6 6E-07 1.3E-11 84.1 13.4 36 216-259 2-38 (184)
44 PRK14974 cell division protein 98.6 3.7E-07 8.1E-12 95.3 12.7 113 116-258 64-181 (336)
45 PRK05537 bifunctional sulfate 98.6 4.2E-07 9.1E-12 100.8 13.6 128 183-322 356-487 (568)
46 PRK00771 signal recognition pa 98.6 1.3E-07 2.7E-12 101.9 9.2 128 96-258 4-136 (437)
47 PRK09825 idnK D-gluconate kina 98.6 8.4E-07 1.8E-11 84.1 13.6 36 215-257 3-38 (176)
48 PRK07261 topology modulation p 98.6 4.2E-07 9.2E-12 85.5 10.2 100 218-391 3-102 (171)
49 PRK12338 hypothetical protein; 98.5 2.3E-06 4.9E-11 88.9 16.4 131 213-394 2-156 (319)
50 PRK02496 adk adenylate kinase; 98.5 1.5E-06 3.3E-11 81.5 13.5 150 218-428 4-168 (184)
51 TIGR03575 selen_PSTK_euk L-ser 98.5 1.1E-06 2.4E-11 92.0 13.5 147 217-409 1-192 (340)
52 PRK10078 ribose 1,5-bisphospho 98.5 5E-06 1.1E-10 78.6 16.5 24 215-238 2-25 (186)
53 PRK06547 hypothetical protein; 98.5 1.5E-06 3.3E-11 82.4 13.0 38 213-257 13-50 (172)
54 PRK11545 gntK gluconate kinase 98.5 1.2E-06 2.7E-11 81.8 12.1 112 221-389 1-112 (163)
55 PRK05506 bifunctional sulfate 98.5 6.3E-07 1.4E-11 100.2 11.7 94 212-318 457-550 (632)
56 PRK14530 adenylate kinase; Pro 98.5 1.9E-06 4.1E-11 83.3 13.0 89 214-314 3-96 (215)
57 PF01591 6PF2K: 6-phosphofruct 98.5 2.9E-06 6.2E-11 84.1 14.4 163 212-418 9-178 (222)
58 PRK04182 cytidylate kinase; Pr 98.4 4.9E-06 1.1E-10 76.5 14.3 33 217-256 2-34 (180)
59 PRK06217 hypothetical protein; 98.4 5.7E-07 1.2E-11 84.8 8.1 108 217-394 3-111 (183)
60 PRK00081 coaE dephospho-CoA ki 98.4 2.1E-06 4.7E-11 82.2 12.0 36 215-258 2-37 (194)
61 PRK13947 shikimate kinase; Pro 98.4 5.8E-06 1.2E-10 76.2 14.1 35 218-259 4-38 (171)
62 cd00464 SK Shikimate kinase (S 98.4 5.8E-06 1.2E-10 74.3 13.8 34 218-258 2-35 (154)
63 PRK14528 adenylate kinase; Pro 98.4 3.4E-06 7.4E-11 80.3 12.8 147 217-417 3-158 (186)
64 PRK12723 flagellar biosynthesi 98.4 6.6E-06 1.4E-10 87.6 16.2 106 117-258 109-219 (388)
65 TIGR00152 dephospho-CoA kinase 98.4 2.8E-06 6.1E-11 80.3 11.9 34 217-257 1-34 (188)
66 PRK14732 coaE dephospho-CoA ki 98.4 3.6E-06 7.9E-11 81.3 12.4 34 217-258 1-34 (196)
67 PRK09270 nucleoside triphospha 98.4 1.2E-05 2.6E-10 78.6 16.2 66 173-257 8-74 (229)
68 PRK13946 shikimate kinase; Pro 98.4 7.5E-06 1.6E-10 77.5 14.2 40 212-258 7-46 (184)
69 PRK00698 tmk thymidylate kinas 98.4 3.1E-05 6.7E-10 73.0 18.3 25 214-238 2-26 (205)
70 PRK14730 coaE dephospho-CoA ki 98.4 3.5E-06 7.6E-11 81.2 11.4 35 217-258 3-37 (195)
71 PRK08118 topology modulation p 98.4 1.9E-06 4.1E-11 81.0 9.3 103 217-394 3-106 (167)
72 TIGR03263 guanyl_kin guanylate 98.3 2.3E-06 4.9E-11 79.5 9.3 23 216-238 2-24 (180)
73 PRK14737 gmk guanylate kinase; 98.3 3E-06 6.6E-11 81.2 10.3 148 214-424 3-167 (186)
74 PTZ00322 6-phosphofructo-2-kin 98.3 1.3E-05 2.8E-10 90.4 16.6 168 208-417 208-375 (664)
75 COG0541 Ffh Signal recognition 98.3 4.2E-06 9E-11 89.7 11.9 172 103-311 15-194 (451)
76 TIGR02173 cyt_kin_arch cytidyl 98.3 9E-06 1.9E-10 74.3 12.6 33 217-256 2-34 (171)
77 COG2074 2-phosphoglycerate kin 98.3 1.8E-05 3.9E-10 80.1 15.5 141 212-405 86-247 (299)
78 cd01672 TMPK Thymidine monopho 98.3 5.1E-05 1.1E-09 70.3 17.0 33 217-251 2-34 (200)
79 PRK00131 aroK shikimate kinase 98.3 1.8E-05 3.8E-10 72.2 13.6 38 214-258 3-40 (175)
80 cd01673 dNK Deoxyribonucleosid 98.3 1.8E-05 3.9E-10 74.6 13.7 22 217-238 1-22 (193)
81 KOG0780 Signal recognition par 98.3 5.2E-06 1.1E-10 87.9 10.9 167 111-314 24-198 (483)
82 PLN02674 adenylate kinase 98.3 1.2E-05 2.7E-10 80.6 13.1 118 215-390 31-160 (244)
83 cd02022 DPCK Dephospho-coenzym 98.3 8.3E-06 1.8E-10 76.9 11.1 34 217-258 1-34 (179)
84 PRK13808 adenylate kinase; Pro 98.2 1.5E-05 3.2E-10 83.4 13.9 32 218-256 3-34 (333)
85 TIGR00041 DTMP_kinase thymidyl 98.2 0.00012 2.7E-09 68.7 18.9 24 215-238 3-26 (195)
86 PRK05480 uridine/cytidine kina 98.2 1.1E-05 2.4E-10 77.3 11.9 41 213-257 4-44 (209)
87 PRK08233 hypothetical protein; 98.2 5.1E-05 1.1E-09 70.0 15.9 25 214-238 2-26 (182)
88 PRK04040 adenylate kinase; Pro 98.2 1.4E-05 3E-10 76.8 12.5 37 215-256 2-38 (188)
89 COG3265 GntK Gluconate kinase 98.2 1.1E-05 2.3E-10 75.9 11.0 118 222-404 2-124 (161)
90 PRK14723 flhF flagellar biosyn 98.2 3.3E-05 7.1E-10 88.3 16.9 146 81-266 90-240 (767)
91 PRK13973 thymidylate kinase; P 98.2 5.7E-05 1.2E-09 73.3 16.3 86 214-308 2-97 (213)
92 PRK06995 flhF flagellar biosyn 98.2 1.4E-05 3E-10 87.3 13.1 130 85-257 167-298 (484)
93 PRK12724 flagellar biosynthesi 98.2 8.7E-05 1.9E-09 80.0 18.8 44 213-258 221-265 (432)
94 PRK03839 putative kinase; Prov 98.2 3E-06 6.4E-11 79.3 6.8 34 217-257 2-35 (180)
95 PRK14731 coaE dephospho-CoA ki 98.2 2E-05 4.4E-10 76.4 12.7 37 213-257 3-39 (208)
96 PRK13948 shikimate kinase; Pro 98.2 2.5E-05 5.5E-10 74.9 13.1 40 213-259 8-47 (182)
97 PRK14734 coaE dephospho-CoA ki 98.2 1.9E-05 4.1E-10 76.4 12.2 52 370-429 128-179 (200)
98 PRK08356 hypothetical protein; 98.2 4.3E-05 9.3E-10 72.9 14.4 22 216-237 6-27 (195)
99 PRK00300 gmk guanylate kinase; 98.2 7.7E-06 1.7E-10 77.6 9.3 25 214-238 4-28 (205)
100 PRK00625 shikimate kinase; Pro 98.2 4.3E-05 9.4E-10 72.7 14.1 34 217-257 2-35 (173)
101 COG1102 Cmk Cytidylate kinase 98.2 1.5E-05 3.3E-10 76.0 10.7 79 217-311 2-84 (179)
102 TIGR02322 phosphon_PhnN phosph 98.2 3.6E-05 7.8E-10 71.7 13.1 23 216-238 2-24 (179)
103 PRK14738 gmk guanylate kinase; 98.1 2.3E-05 5E-10 75.8 11.9 27 212-238 10-36 (206)
104 PRK03731 aroL shikimate kinase 98.1 7.1E-05 1.5E-09 69.2 14.6 35 217-258 4-38 (171)
105 PRK07667 uridine kinase; Provi 98.1 2.9E-05 6.3E-10 74.3 12.1 42 213-256 15-56 (193)
106 COG0194 Gmk Guanylate kinase [ 98.1 1.8E-05 3.9E-10 76.7 10.3 87 214-311 3-104 (191)
107 KOG3354 Gluconate kinase [Carb 98.1 5.3E-05 1.1E-09 72.0 13.0 141 212-405 9-152 (191)
108 PRK14733 coaE dephospho-CoA ki 98.1 2.7E-05 5.9E-10 76.2 11.3 39 213-258 4-42 (204)
109 PRK08154 anaerobic benzoate ca 98.1 0.0002 4.3E-09 73.7 18.1 37 214-257 132-168 (309)
110 PRK14526 adenylate kinase; Pro 98.1 6.2E-05 1.3E-09 73.8 13.6 34 218-258 3-37 (211)
111 PRK11889 flhF flagellar biosyn 98.1 7.2E-05 1.6E-09 80.3 14.7 43 213-257 239-281 (436)
112 PRK13949 shikimate kinase; Pro 98.1 0.00017 3.6E-09 68.0 15.5 32 218-256 4-35 (169)
113 cd01130 VirB11-like_ATPase Typ 98.0 3.2E-05 7E-10 73.4 10.5 132 214-398 24-157 (186)
114 PF01121 CoaE: Dephospho-CoA k 98.0 3E-05 6.6E-10 74.3 10.0 33 217-257 2-34 (180)
115 PTZ00451 dephospho-CoA kinase; 98.0 6E-05 1.3E-09 75.7 12.1 35 216-257 2-36 (244)
116 KOG0781 Signal recognition par 98.0 3.3E-05 7.2E-10 83.6 10.7 216 55-309 244-475 (587)
117 PLN02422 dephospho-CoA kinase 98.0 7.3E-05 1.6E-09 74.6 12.3 34 217-258 3-36 (232)
118 PTZ00088 adenylate kinase 1; P 98.0 0.00011 2.4E-09 72.9 13.5 35 215-256 6-40 (229)
119 cd02023 UMPK Uridine monophosp 98.0 7.3E-05 1.6E-09 70.9 11.6 37 217-257 1-37 (198)
120 COG0529 CysC Adenylylsulfate k 98.0 0.0001 2.2E-09 71.3 12.3 45 212-258 20-64 (197)
121 COG0563 Adk Adenylate kinase a 98.0 6.9E-05 1.5E-09 71.7 11.1 32 218-256 3-34 (178)
122 PF13238 AAA_18: AAA domain; P 98.0 1.5E-05 3.3E-10 68.7 5.9 21 218-238 1-21 (129)
123 smart00072 GuKc Guanylate kina 97.9 5.7E-05 1.2E-09 71.5 10.1 24 215-238 2-25 (184)
124 cd02030 NDUO42 NADH:Ubiquinone 97.9 0.0001 2.2E-09 71.9 12.0 22 217-238 1-22 (219)
125 PF00406 ADK: Adenylate kinase 97.9 6.8E-05 1.5E-09 68.3 10.1 135 220-417 1-144 (151)
126 PRK14529 adenylate kinase; Pro 97.9 7E-05 1.5E-09 74.3 10.9 122 218-390 3-128 (223)
127 PF13207 AAA_17: AAA domain; P 97.9 5.2E-06 1.1E-10 72.0 2.3 33 217-256 1-33 (121)
128 TIGR00235 udk uridine kinase. 97.9 0.00023 5E-09 68.5 13.6 40 213-256 4-43 (207)
129 PF02223 Thymidylate_kin: Thym 97.9 0.00055 1.2E-08 64.2 15.6 55 372-429 123-177 (186)
130 PRK00091 miaA tRNA delta(2)-is 97.9 0.00014 3E-09 75.3 12.6 86 214-306 3-99 (307)
131 PRK05416 glmZ(sRNA)-inactivati 97.9 0.00043 9.3E-09 71.1 15.5 25 214-238 5-29 (288)
132 KOG3079 Uridylate kinase/adeny 97.8 0.00041 8.8E-09 67.4 13.7 148 212-415 5-161 (195)
133 COG0703 AroK Shikimate kinase 97.8 0.00036 7.8E-09 66.9 13.3 34 218-258 5-38 (172)
134 PRK05057 aroK shikimate kinase 97.8 0.0002 4.3E-09 67.5 11.5 37 215-258 4-40 (172)
135 PTZ00301 uridine kinase; Provi 97.8 0.00018 3.9E-09 70.6 11.5 43 372-416 131-175 (210)
136 PLN02348 phosphoribulokinase 97.8 0.00026 5.7E-09 75.6 13.6 43 212-256 46-103 (395)
137 PRK05703 flhF flagellar biosyn 97.8 0.00079 1.7E-08 72.6 17.1 42 215-258 221-264 (424)
138 PLN02459 probable adenylate ki 97.8 0.00031 6.6E-09 71.4 12.8 38 214-258 28-66 (261)
139 TIGR00017 cmk cytidylate kinas 97.8 0.00067 1.5E-08 66.7 14.9 35 215-256 2-36 (217)
140 PRK07429 phosphoribulokinase; 97.8 0.00094 2E-08 69.8 16.7 41 212-256 5-45 (327)
141 cd02028 UMPK_like Uridine mono 97.8 0.00012 2.7E-09 69.4 9.2 40 217-258 1-40 (179)
142 PF00448 SRP54: SRP54-type pro 97.8 4.5E-05 9.8E-10 73.9 6.2 95 215-316 1-100 (196)
143 PF00485 PRK: Phosphoribulokin 97.7 0.0002 4.4E-09 68.2 10.2 43 372-416 131-174 (194)
144 PRK12726 flagellar biosynthesi 97.7 0.00017 3.6E-09 77.1 10.3 44 213-258 204-247 (407)
145 PLN02924 thymidylate kinase 97.7 0.00088 1.9E-08 66.1 14.6 89 210-309 11-109 (220)
146 COG0237 CoaE Dephospho-CoA kin 97.7 0.00034 7.3E-09 68.5 10.7 36 215-258 2-37 (201)
147 PRK13974 thymidylate kinase; P 97.7 0.0016 3.4E-08 63.3 15.2 24 215-238 3-26 (212)
148 cd02026 PRK Phosphoribulokinas 97.6 0.0013 2.8E-08 66.9 14.7 58 371-430 119-181 (273)
149 cd02024 NRK1 Nicotinamide ribo 97.6 0.00017 3.7E-09 69.7 7.4 35 217-257 1-35 (187)
150 TIGR03499 FlhF flagellar biosy 97.6 0.00015 3.2E-09 73.8 7.2 43 213-257 192-236 (282)
151 PLN02318 phosphoribulokinase/u 97.6 0.0011 2.4E-08 74.4 14.3 39 213-257 63-101 (656)
152 PRK00023 cmk cytidylate kinase 97.6 0.0026 5.6E-08 62.8 15.3 36 214-256 3-38 (225)
153 PRK09518 bifunctional cytidyla 97.5 0.0015 3.2E-08 74.6 15.1 34 217-257 3-36 (712)
154 PRK03333 coaE dephospho-CoA ki 97.5 0.0011 2.3E-08 70.9 12.0 34 217-258 3-36 (395)
155 cd03115 SRP The signal recogni 97.4 0.00044 9.6E-09 64.2 7.7 40 217-258 2-41 (173)
156 PF01202 SKI: Shikimate kinase 97.4 0.0021 4.4E-08 59.5 12.0 27 224-257 1-27 (158)
157 PRK14021 bifunctional shikimat 97.4 0.0032 6.8E-08 69.9 15.4 35 216-257 7-41 (542)
158 PRK13975 thymidylate kinase; P 97.4 0.0058 1.3E-07 57.5 15.0 24 215-238 2-25 (196)
159 PRK13951 bifunctional shikimat 97.4 0.0037 8E-08 68.7 15.4 35 218-259 3-37 (488)
160 COG0572 Udk Uridine kinase [Nu 97.4 0.0015 3.3E-08 64.9 11.2 41 213-257 6-46 (218)
161 PF00625 Guanylate_kin: Guanyl 97.4 0.0018 3.9E-08 61.1 11.3 86 214-309 1-102 (183)
162 PRK13477 bifunctional pantoate 97.4 0.0022 4.7E-08 70.9 13.4 37 213-256 282-318 (512)
163 PLN02165 adenylate isopentenyl 97.4 0.0013 2.9E-08 69.0 11.0 37 213-256 41-77 (334)
164 cd02029 PRK_like Phosphoribulo 97.4 0.00081 1.7E-08 68.9 9.1 40 217-258 1-40 (277)
165 smart00382 AAA ATPases associa 97.3 0.0003 6.5E-09 59.2 4.8 42 215-258 2-43 (148)
166 PLN02772 guanylate kinase 97.3 0.0012 2.5E-08 70.8 10.2 37 202-238 121-158 (398)
167 PRK07933 thymidylate kinase; V 97.3 0.0051 1.1E-07 60.2 13.9 33 217-251 2-34 (213)
168 COG0125 Tmk Thymidylate kinase 97.3 0.0091 2E-07 58.9 15.1 87 214-309 2-97 (208)
169 PRK11860 bifunctional 3-phosph 97.2 0.0047 1E-07 70.0 14.5 33 217-256 444-476 (661)
170 COG1936 Predicted nucleotide k 97.2 0.0037 8E-08 60.4 11.1 136 217-430 2-141 (180)
171 PLN02840 tRNA dimethylallyltra 97.2 0.00094 2E-08 72.1 8.0 44 206-256 12-55 (421)
172 PLN02842 nucleotide kinase 97.2 0.004 8.7E-08 68.7 12.5 31 219-256 1-31 (505)
173 PRK14721 flhF flagellar biosyn 97.2 0.0024 5.1E-08 69.0 10.5 45 213-257 189-233 (420)
174 PF03668 ATP_bind_2: P-loop AT 97.1 0.012 2.6E-07 60.6 15.0 62 363-430 77-141 (284)
175 PRK09435 membrane ATPase/prote 97.1 0.00056 1.2E-08 71.7 5.2 53 201-255 42-94 (332)
176 COG3896 Chloramphenicol 3-O-ph 97.1 0.004 8.6E-08 59.8 10.1 127 214-388 22-160 (205)
177 PF00004 AAA: ATPase family as 97.0 0.0012 2.6E-08 57.1 5.8 34 218-256 1-34 (132)
178 TIGR00554 panK_bact pantothena 97.0 0.00066 1.4E-08 69.9 4.5 45 212-257 59-104 (290)
179 TIGR00750 lao LAO/AO transport 97.0 0.00093 2E-08 68.4 5.5 54 201-256 20-73 (300)
180 PRK15453 phosphoribulokinase; 97.0 0.00069 1.5E-08 69.8 4.3 44 213-258 3-46 (290)
181 PRK05439 pantothenate kinase; 97.0 0.0013 2.9E-08 68.4 6.4 46 211-257 82-128 (311)
182 PLN02748 tRNA dimethylallyltra 97.0 0.0022 4.8E-08 70.1 8.3 88 212-309 19-121 (468)
183 cd02025 PanK Pantothenate kina 96.9 0.00064 1.4E-08 66.8 3.2 39 217-257 1-41 (220)
184 PRK13900 type IV secretion sys 96.9 0.0058 1.3E-07 64.0 10.1 135 214-402 159-296 (332)
185 PRK13976 thymidylate kinase; P 96.8 0.017 3.6E-07 56.7 12.5 22 217-238 2-23 (209)
186 KOG3220 Similar to bacterial d 96.8 0.0071 1.5E-07 59.8 9.4 34 217-258 3-36 (225)
187 PF01745 IPT: Isopentenyl tran 96.8 0.0086 1.9E-07 59.8 10.1 123 216-391 2-141 (233)
188 PLN02199 shikimate kinase 96.7 0.013 2.8E-07 60.9 11.4 37 215-258 102-138 (303)
189 PRK14960 DNA polymerase III su 96.7 0.0084 1.8E-07 68.2 10.7 56 160-239 6-61 (702)
190 cd02019 NK Nucleoside/nucleoti 96.6 0.0013 2.7E-08 53.2 2.5 33 217-253 1-33 (69)
191 TIGR01241 FtsH_fam ATP-depende 96.6 0.0086 1.9E-07 65.4 9.7 73 166-256 52-124 (495)
192 PHA02544 44 clamp loader, smal 96.6 0.0028 6E-08 64.3 5.5 65 162-255 14-78 (316)
193 cd01120 RecA-like_NTPases RecA 96.6 0.0014 3E-08 58.0 2.9 38 217-256 1-38 (165)
194 PRK05800 cobU adenosylcobinami 96.6 0.0095 2E-07 56.6 8.5 33 217-254 3-35 (170)
195 KOG2134 Polynucleotide kinase 96.6 0.0062 1.3E-07 64.9 7.9 77 212-322 266-342 (422)
196 cd01131 PilT Pilus retraction 96.6 0.0051 1.1E-07 59.2 6.7 94 217-322 3-96 (198)
197 cd00009 AAA The AAA+ (ATPases 96.6 0.0025 5.4E-08 54.5 4.0 40 215-256 19-58 (151)
198 PF00437 T2SE: Type II/IV secr 96.6 0.017 3.8E-07 57.5 10.5 88 214-317 126-214 (270)
199 TIGR00174 miaA tRNA isopenteny 96.5 0.0048 1E-07 63.6 6.3 33 217-256 1-33 (287)
200 PRK08084 DNA replication initi 96.4 0.022 4.8E-07 56.3 10.3 39 217-257 47-85 (235)
201 cd01129 PulE-GspE PulE/GspE Th 96.4 0.0078 1.7E-07 60.9 7.2 90 216-322 81-171 (264)
202 PRK05642 DNA replication initi 96.4 0.012 2.6E-07 58.2 8.3 96 216-314 46-144 (234)
203 PRK12323 DNA polymerase III su 96.4 0.011 2.4E-07 67.3 8.9 56 160-239 7-62 (700)
204 PF03308 ArgK: ArgK protein; 96.4 0.0022 4.7E-08 65.4 2.9 122 200-337 14-155 (266)
205 PRK14961 DNA polymerase III su 96.3 0.0056 1.2E-07 64.3 5.8 55 160-238 7-61 (363)
206 PF13191 AAA_16: AAA ATPase do 96.3 0.003 6.4E-08 58.0 3.2 43 212-256 21-63 (185)
207 PRK03992 proteasome-activating 96.3 0.021 4.5E-07 60.9 9.9 38 214-256 164-201 (389)
208 smart00763 AAA_PrkA PrkA AAA d 96.3 0.0038 8.2E-08 66.3 4.3 25 214-238 77-101 (361)
209 PRK07003 DNA polymerase III su 96.3 0.027 5.8E-07 65.1 11.3 56 160-239 7-62 (830)
210 TIGR02788 VirB11 P-type DNA tr 96.3 0.038 8.2E-07 56.9 11.5 134 214-401 143-280 (308)
211 PTZ00454 26S protease regulato 96.3 0.021 4.6E-07 61.3 9.8 60 167-238 143-202 (398)
212 KOG0739 AAA+-type ATPase [Post 96.3 0.12 2.7E-06 54.2 14.8 109 152-306 112-231 (439)
213 KOG3347 Predicted nucleotide k 96.3 0.0073 1.6E-07 57.5 5.4 38 213-258 6-44 (176)
214 COG1419 FlhF Flagellar GTP-bin 96.2 0.015 3.2E-07 62.6 8.3 98 213-320 201-302 (407)
215 COG1428 Deoxynucleoside kinase 96.2 0.096 2.1E-06 52.2 13.3 23 216-238 5-27 (216)
216 COG0396 sufC Cysteine desulfur 96.2 0.005 1.1E-07 62.0 4.3 59 203-262 18-76 (251)
217 PRK08451 DNA polymerase III su 96.2 0.023 5E-07 63.3 9.9 55 160-238 5-59 (535)
218 PRK09087 hypothetical protein; 96.2 0.073 1.6E-06 52.7 12.2 84 217-314 46-131 (226)
219 PF13555 AAA_29: P-loop contai 96.2 0.0044 9.5E-08 50.2 3.0 21 217-237 25-45 (62)
220 cd01124 KaiC KaiC is a circadi 96.2 0.0039 8.5E-08 57.7 3.1 38 217-256 1-38 (187)
221 TIGR02903 spore_lon_C ATP-depe 96.1 0.014 3.1E-07 65.8 8.0 42 215-256 175-221 (615)
222 PLN02796 D-glycerate 3-kinase 96.1 0.0059 1.3E-07 64.5 4.5 43 213-257 98-140 (347)
223 PRK14722 flhF flagellar biosyn 96.1 0.011 2.5E-07 63.0 6.7 44 213-257 135-179 (374)
224 KOG0738 AAA+-type ATPase [Post 96.1 0.017 3.7E-07 62.1 7.8 67 166-256 209-281 (491)
225 PRK12402 replication factor C 96.1 0.011 2.4E-07 60.0 6.2 68 164-256 10-77 (337)
226 TIGR01618 phage_P_loop phage n 96.1 0.0052 1.1E-07 61.1 3.7 35 213-256 10-44 (220)
227 PRK13768 GTPase; Provisional 96.1 0.0055 1.2E-07 61.4 4.0 41 214-256 1-41 (253)
228 PF05496 RuvB_N: Holliday junc 96.0 0.0069 1.5E-07 60.8 4.4 74 159-257 14-87 (233)
229 PRK14962 DNA polymerase III su 96.0 0.0079 1.7E-07 65.9 5.2 54 161-238 6-59 (472)
230 PRK07764 DNA polymerase III su 96.0 0.045 9.7E-07 63.9 11.4 55 161-239 7-61 (824)
231 KOG1969 DNA replication checkp 96.0 0.0074 1.6E-07 68.8 4.9 39 214-257 325-363 (877)
232 PLN03046 D-glycerate 3-kinase; 96.0 0.0073 1.6E-07 65.6 4.7 44 212-257 209-252 (460)
233 TIGR02782 TrbB_P P-type conjug 96.0 0.034 7.3E-07 57.4 9.4 84 216-315 133-219 (299)
234 cd01394 radB RadB. The archaea 96.0 0.007 1.5E-07 58.2 4.1 42 213-256 17-58 (218)
235 PHA02624 large T antigen; Prov 96.0 0.011 2.4E-07 66.5 6.2 34 205-238 421-454 (647)
236 PF00005 ABC_tran: ABC transpo 96.0 0.0054 1.2E-07 54.2 2.9 42 214-258 10-51 (137)
237 TIGR01166 cbiO cobalt transpor 95.9 0.0098 2.1E-07 56.1 4.8 41 213-256 16-56 (190)
238 COG1126 GlnQ ABC-type polar am 95.9 0.0091 2E-07 59.7 4.6 41 212-255 25-65 (240)
239 PRK12727 flagellar biosynthesi 95.9 0.034 7.3E-07 62.1 9.5 44 214-258 349-393 (559)
240 TIGR00101 ureG urease accessor 95.9 0.0096 2.1E-07 57.7 4.6 39 215-256 1-39 (199)
241 cd03225 ABC_cobalt_CbiO_domain 95.9 0.011 2.5E-07 56.4 5.1 41 213-256 25-65 (211)
242 PRK14955 DNA polymerase III su 95.9 0.011 2.3E-07 63.1 5.3 59 159-241 6-64 (397)
243 cd03226 ABC_cobalt_CbiO_domain 95.9 0.01 2.2E-07 56.6 4.7 41 213-256 24-64 (205)
244 CHL00181 cbbX CbbX; Provisiona 95.9 0.019 4.1E-07 58.8 6.9 88 158-256 12-102 (287)
245 TIGR01243 CDC48 AAA family ATP 95.9 0.036 7.7E-07 63.6 9.7 39 213-256 485-523 (733)
246 PRK06731 flhF flagellar biosyn 95.9 0.026 5.7E-07 57.7 7.8 42 214-257 74-115 (270)
247 COG1072 CoaA Panthothenate kin 95.9 0.029 6.4E-07 57.7 8.1 44 212-256 79-123 (283)
248 PF13476 AAA_23: AAA domain; P 95.9 0.0071 1.5E-07 55.8 3.4 24 214-237 18-41 (202)
249 TIGR02237 recomb_radB DNA repa 95.9 0.0086 1.9E-07 57.1 4.1 41 214-256 11-51 (209)
250 PF10662 PduV-EutP: Ethanolami 95.9 0.03 6.5E-07 52.4 7.5 76 218-314 4-80 (143)
251 cd03238 ABC_UvrA The excision 95.8 0.0096 2.1E-07 56.9 4.3 26 212-237 18-43 (176)
252 cd03263 ABC_subfamily_A The AB 95.8 0.012 2.6E-07 56.5 5.0 41 213-256 26-66 (220)
253 TIGR01420 pilT_fam pilus retra 95.8 0.042 9.1E-07 57.5 9.3 94 215-320 122-215 (343)
254 COG4618 ArpD ABC-type protease 95.8 0.045 9.7E-07 60.6 9.6 42 217-261 364-405 (580)
255 TIGR03238 dnd_assoc_3 dnd syst 95.8 0.0094 2E-07 65.5 4.5 65 172-256 5-69 (504)
256 COG3709 Uncharacterized compon 95.8 0.076 1.6E-06 51.3 9.9 25 214-238 4-28 (192)
257 cd03265 ABC_DrrA DrrA is the A 95.8 0.013 2.8E-07 56.6 4.9 42 212-256 23-64 (220)
258 COG0324 MiaA tRNA delta(2)-iso 95.8 0.021 4.6E-07 59.5 6.7 89 214-309 2-102 (308)
259 cd03114 ArgK-like The function 95.8 0.0065 1.4E-07 56.2 2.7 36 218-255 2-37 (148)
260 PRK13833 conjugal transfer pro 95.8 0.078 1.7E-06 55.6 10.9 86 215-315 144-230 (323)
261 TIGR02881 spore_V_K stage V sp 95.7 0.025 5.4E-07 56.5 7.0 24 215-238 42-65 (261)
262 TIGR03420 DnaA_homol_Hda DnaA 95.7 0.0076 1.7E-07 57.7 3.2 42 214-257 37-78 (226)
263 COG1120 FepC ABC-type cobalami 95.7 0.013 2.9E-07 59.6 5.0 43 212-257 25-67 (258)
264 TIGR03864 PQQ_ABC_ATP ABC tran 95.7 0.013 2.8E-07 57.2 4.8 42 212-256 24-65 (236)
265 TIGR02673 FtsE cell division A 95.7 0.014 2.9E-07 56.0 4.8 41 213-256 26-66 (214)
266 cd03301 ABC_MalK_N The N-termi 95.7 0.014 3.1E-07 55.8 5.0 41 213-256 24-64 (213)
267 TIGR02315 ABC_phnC phosphonate 95.7 0.013 2.8E-07 57.2 4.8 41 213-256 26-66 (243)
268 COG0465 HflB ATP-dependent Zn 95.7 0.012 2.6E-07 66.1 5.0 75 166-261 147-224 (596)
269 PRK14963 DNA polymerase III su 95.7 0.014 3.1E-07 64.4 5.4 52 163-238 8-59 (504)
270 CHL00176 ftsH cell division pr 95.7 0.037 8E-07 62.9 8.8 74 166-257 180-253 (638)
271 cd03269 ABC_putative_ATPase Th 95.7 0.0089 1.9E-07 57.2 3.3 40 213-255 24-63 (210)
272 cd03272 ABC_SMC3_euk Eukaryoti 95.7 0.0072 1.6E-07 59.0 2.8 23 214-236 22-44 (243)
273 cd03255 ABC_MJ0796_Lo1CDE_FtsE 95.7 0.0087 1.9E-07 57.5 3.3 41 213-256 28-68 (218)
274 cd03258 ABC_MetN_methionine_tr 95.7 0.015 3.2E-07 56.5 4.9 41 213-256 29-69 (233)
275 cd03295 ABC_OpuCA_Osmoprotecti 95.7 0.015 3.2E-07 57.1 4.9 41 213-256 25-65 (242)
276 PRK04195 replication factor C 95.7 0.018 3.9E-07 62.8 6.0 68 164-257 9-76 (482)
277 PF03029 ATP_bind_1: Conserved 95.7 0.0068 1.5E-07 60.6 2.5 36 220-257 1-36 (238)
278 COG1121 ZnuC ABC-type Mn/Zn tr 95.7 0.0085 1.8E-07 60.9 3.3 41 213-256 28-68 (254)
279 PLN03025 replication factor C 95.7 0.013 2.8E-07 60.3 4.7 51 163-238 7-57 (319)
280 PRK15177 Vi polysaccharide exp 95.6 0.016 3.4E-07 56.3 5.0 25 214-238 12-36 (213)
281 PRK10584 putative ABC transpor 95.6 0.015 3.3E-07 56.3 4.8 41 213-256 34-74 (228)
282 PF13245 AAA_19: Part of AAA d 95.6 0.012 2.6E-07 48.9 3.6 24 215-238 10-33 (76)
283 PRK04296 thymidine kinase; Pro 95.6 0.01 2.3E-07 56.8 3.6 37 215-253 2-38 (190)
284 cd03256 ABC_PhnC_transporter A 95.6 0.015 3.3E-07 56.6 4.8 41 213-256 25-65 (241)
285 PRK14957 DNA polymerase III su 95.6 0.017 3.6E-07 64.6 5.7 56 159-238 6-61 (546)
286 TIGR02397 dnaX_nterm DNA polym 95.6 0.016 3.4E-07 59.5 5.2 55 160-238 5-59 (355)
287 cd03257 ABC_NikE_OppD_transpor 95.6 0.016 3.4E-07 55.9 4.8 50 204-256 20-69 (228)
288 cd03259 ABC_Carb_Solutes_like 95.6 0.0096 2.1E-07 57.1 3.4 41 213-256 24-64 (213)
289 cd03235 ABC_Metallic_Cations A 95.6 0.016 3.4E-07 55.6 4.8 39 213-254 23-61 (213)
290 cd03218 ABC_YhbG The ABC trans 95.6 0.017 3.6E-07 56.1 5.0 41 213-256 24-64 (232)
291 cd03247 ABCC_cytochrome_bd The 95.6 0.017 3.6E-07 54.2 4.8 41 213-256 26-66 (178)
292 PRK14969 DNA polymerase III su 95.6 0.018 3.9E-07 63.8 5.9 55 161-239 8-62 (527)
293 TIGR01243 CDC48 AAA family ATP 95.6 0.028 6.2E-07 64.4 7.6 74 166-256 175-248 (733)
294 PRK14958 DNA polymerase III su 95.6 0.017 3.6E-07 63.9 5.5 57 159-239 6-62 (509)
295 cd03292 ABC_FtsE_transporter F 95.6 0.0098 2.1E-07 56.9 3.2 40 213-255 25-64 (214)
296 COG3911 Predicted ATPase [Gene 95.6 0.012 2.7E-07 56.0 3.7 27 214-240 8-34 (183)
297 PRK14729 miaA tRNA delta(2)-is 95.6 0.033 7.2E-07 57.8 7.3 35 214-256 3-37 (300)
298 PRK14949 DNA polymerase III su 95.6 0.016 3.4E-07 67.9 5.4 56 160-239 7-62 (944)
299 PRK13851 type IV secretion sys 95.6 0.07 1.5E-06 56.4 9.8 91 214-316 161-252 (344)
300 TIGR01189 ccmA heme ABC export 95.6 0.019 4E-07 54.7 5.0 41 213-256 24-64 (198)
301 COG1703 ArgK Putative periplas 95.6 0.015 3.2E-07 60.6 4.6 121 201-337 37-177 (323)
302 PRK13538 cytochrome c biogenes 95.6 0.019 4.1E-07 54.9 5.1 42 212-256 24-65 (204)
303 PRK06620 hypothetical protein; 95.5 0.14 3.1E-06 50.2 11.3 82 216-313 45-126 (214)
304 TIGR03410 urea_trans_UrtE urea 95.5 0.018 3.9E-07 55.8 4.9 41 213-256 24-64 (230)
305 cd03244 ABCC_MRP_domain2 Domai 95.5 0.018 3.9E-07 55.4 4.9 41 213-256 28-68 (221)
306 PRK14250 phosphate ABC transpo 95.5 0.018 3.9E-07 56.6 5.0 41 213-256 27-67 (241)
307 cd03224 ABC_TM1139_LivF_branch 95.5 0.011 2.5E-07 56.7 3.5 42 212-256 23-64 (222)
308 PRK00080 ruvB Holliday junctio 95.5 0.023 5E-07 58.6 5.9 58 161-238 17-74 (328)
309 cd03293 ABC_NrtD_SsuB_transpor 95.5 0.01 2.2E-07 57.2 3.2 40 213-255 28-67 (220)
310 PRK14956 DNA polymerase III su 95.5 0.019 4.2E-07 63.1 5.6 54 161-238 10-63 (484)
311 cd03219 ABC_Mj1267_LivG_branch 95.5 0.011 2.3E-07 57.6 3.2 41 213-256 24-64 (236)
312 TIGR03015 pepcterm_ATPase puta 95.5 0.0097 2.1E-07 58.5 3.0 25 214-238 42-66 (269)
313 TIGR00960 3a0501s02 Type II (G 95.5 0.011 2.3E-07 56.8 3.2 41 213-256 27-67 (216)
314 PF13401 AAA_22: AAA domain; P 95.5 0.0094 2E-07 51.9 2.6 25 214-238 3-27 (131)
315 TIGR01184 ntrCD nitrate transp 95.5 0.019 4.1E-07 56.1 4.9 40 214-256 10-49 (230)
316 TIGR02533 type_II_gspE general 95.5 0.043 9.2E-07 60.4 8.1 89 217-322 244-333 (486)
317 cd03214 ABC_Iron-Siderophores_ 95.5 0.021 4.6E-07 53.6 5.1 41 213-256 23-63 (180)
318 cd03230 ABC_DR_subfamily_A Thi 95.5 0.021 4.5E-07 53.4 4.9 41 213-256 24-64 (173)
319 TIGR02211 LolD_lipo_ex lipopro 95.5 0.012 2.5E-07 56.8 3.3 41 213-256 29-69 (221)
320 cd03262 ABC_HisP_GlnQ_permease 95.5 0.011 2.5E-07 56.3 3.3 41 213-256 24-64 (213)
321 KOG3062 RNA polymerase II elon 95.5 0.035 7.6E-07 56.0 6.7 81 217-312 3-86 (281)
322 cd03229 ABC_Class3 This class 95.5 0.012 2.6E-07 55.2 3.3 41 213-256 24-64 (178)
323 cd03296 ABC_CysA_sulfate_impor 95.5 0.011 2.5E-07 57.8 3.3 50 204-256 17-66 (239)
324 cd03246 ABCC_Protease_Secretio 95.5 0.021 4.5E-07 53.4 4.9 41 213-256 26-66 (173)
325 KOG0730 AAA+-type ATPase [Post 95.5 0.05 1.1E-06 61.6 8.6 48 204-256 450-504 (693)
326 cd03251 ABCC_MsbA MsbA is an e 95.5 0.019 4.2E-07 55.7 4.9 41 213-256 26-66 (234)
327 KOG0733 Nuclear AAA ATPase (VC 95.4 0.032 6.9E-07 62.9 6.9 39 213-256 543-581 (802)
328 TIGR01277 thiQ thiamine ABC tr 95.4 0.02 4.3E-07 55.1 4.8 40 214-256 23-62 (213)
329 cd03253 ABCC_ATM1_transporter 95.4 0.02 4.2E-07 55.7 4.8 41 213-256 25-65 (236)
330 cd03261 ABC_Org_Solvent_Resist 95.4 0.012 2.6E-07 57.4 3.3 41 213-256 24-64 (235)
331 cd03268 ABC_BcrA_bacitracin_re 95.4 0.012 2.7E-07 56.1 3.4 41 213-256 24-64 (208)
332 PRK09361 radB DNA repair and r 95.4 0.015 3.3E-07 56.2 4.0 41 213-255 21-61 (225)
333 cd00071 GMPK Guanosine monopho 95.4 0.01 2.2E-07 54.1 2.6 22 217-238 1-22 (137)
334 PRK11300 livG leucine/isoleuci 95.4 0.021 4.6E-07 56.2 5.0 41 213-256 29-69 (255)
335 cd03215 ABC_Carb_Monos_II This 95.4 0.022 4.8E-07 53.6 4.9 41 213-256 24-64 (182)
336 TIGR00176 mobB molybdopterin-g 95.4 0.011 2.5E-07 55.2 3.0 36 217-254 1-36 (155)
337 cd03254 ABCC_Glucan_exporter_l 95.4 0.021 4.6E-07 55.2 4.9 41 213-256 27-67 (229)
338 PRK10895 lipopolysaccharide AB 95.4 0.022 4.7E-07 55.8 5.0 41 213-256 27-67 (241)
339 PRK14964 DNA polymerase III su 95.4 0.02 4.4E-07 63.1 5.3 52 163-238 7-58 (491)
340 PRK10575 iron-hydroxamate tran 95.4 0.019 4.2E-07 57.3 4.7 41 213-256 35-75 (265)
341 TIGR03005 ectoine_ehuA ectoine 95.4 0.021 4.6E-07 56.3 4.8 41 213-256 24-64 (252)
342 cd03274 ABC_SMC4_euk Eukaryoti 95.4 0.012 2.6E-07 57.5 3.0 22 215-236 25-46 (212)
343 PRK13541 cytochrome c biogenes 95.4 0.013 2.9E-07 55.6 3.3 41 213-256 24-64 (195)
344 PRK13894 conjugal transfer ATP 95.4 0.17 3.6E-06 53.0 11.6 86 215-315 148-234 (319)
345 PRK10908 cell division protein 95.3 0.022 4.8E-07 55.0 4.8 41 213-256 26-66 (222)
346 cd03298 ABC_ThiQ_thiamine_tran 95.3 0.023 5E-07 54.4 4.9 40 214-256 23-62 (211)
347 cd00984 DnaB_C DnaB helicase C 95.3 0.015 3.3E-07 56.4 3.8 42 214-256 12-53 (242)
348 PRK10771 thiQ thiamine transpo 95.3 0.023 4.9E-07 55.4 4.9 40 214-256 24-63 (232)
349 TIGR03878 thermo_KaiC_2 KaiC d 95.3 0.015 3.2E-07 58.5 3.7 41 213-255 34-74 (259)
350 cd00820 PEPCK_HprK Phosphoenol 95.3 0.02 4.4E-07 51.0 4.1 34 215-257 15-48 (107)
351 cd01918 HprK_C HprK/P, the bif 95.3 0.016 3.5E-07 54.4 3.7 24 215-238 14-37 (149)
352 TIGR03608 L_ocin_972_ABC putat 95.3 0.014 2.9E-07 55.6 3.2 40 213-255 22-61 (206)
353 COG1119 ModF ABC-type molybden 95.3 0.016 3.5E-07 58.8 3.9 28 215-243 57-84 (257)
354 cd03260 ABC_PstB_phosphate_tra 95.3 0.014 3E-07 56.5 3.3 42 213-256 24-69 (227)
355 PRK11629 lolD lipoprotein tran 95.3 0.014 3E-07 57.0 3.3 41 213-256 33-73 (233)
356 TIGR02770 nickel_nikD nickel i 95.3 0.013 2.9E-07 57.0 3.2 41 214-256 11-54 (230)
357 cd03297 ABC_ModC_molybdenum_tr 95.3 0.014 3.1E-07 56.0 3.3 38 213-254 22-59 (214)
358 cd02034 CooC The accessory pro 95.3 0.016 3.5E-07 51.8 3.4 36 218-255 2-37 (116)
359 PRK10247 putative ABC transpor 95.3 0.014 3.1E-07 56.7 3.3 41 213-256 31-71 (225)
360 PRK06893 DNA replication initi 95.3 0.15 3.2E-06 50.2 10.5 37 217-255 41-77 (229)
361 PRK08903 DnaA regulatory inact 95.3 0.015 3.3E-07 56.3 3.5 41 215-257 42-82 (227)
362 cd03216 ABC_Carb_Monos_I This 95.3 0.025 5.4E-07 52.6 4.8 41 213-256 24-64 (163)
363 cd03252 ABCC_Hemolysin The ABC 95.2 0.021 4.6E-07 55.6 4.4 41 213-256 26-66 (237)
364 cd03283 ABC_MutS-like MutS-lik 95.2 0.014 3E-07 56.5 3.1 22 216-237 26-47 (199)
365 PRK14242 phosphate transporter 95.2 0.014 3.1E-07 57.5 3.2 26 213-238 30-55 (253)
366 cd03264 ABC_drug_resistance_li 95.2 0.014 3.1E-07 55.8 3.1 37 217-256 27-63 (211)
367 PF13479 AAA_24: AAA domain 95.2 0.02 4.3E-07 55.8 4.1 32 214-255 2-33 (213)
368 COG1222 RPT1 ATP-dependent 26S 95.2 0.084 1.8E-06 56.4 8.9 67 213-305 183-249 (406)
369 COG1855 ATPase (PilT family) [ 95.2 0.011 2.5E-07 64.4 2.6 24 214-237 262-285 (604)
370 cd03249 ABC_MTABC3_MDL1_MDL2 M 95.2 0.015 3.2E-07 56.8 3.2 42 212-256 26-67 (238)
371 COG4240 Predicted kinase [Gene 95.2 0.043 9.3E-07 55.6 6.4 51 205-257 40-91 (300)
372 TIGR00150 HI0065_YjeE ATPase, 95.2 0.016 3.4E-07 53.5 3.2 24 215-238 22-45 (133)
373 TIGR01978 sufC FeS assembly AT 95.2 0.015 3.3E-07 56.7 3.2 43 213-256 24-66 (243)
374 PRK11264 putative amino-acid A 95.2 0.015 3.3E-07 57.1 3.3 42 212-256 26-67 (250)
375 cd03243 ABC_MutS_homologs The 95.2 0.016 3.5E-07 55.5 3.4 23 214-236 28-50 (202)
376 PF08477 Miro: Miro-like prote 95.2 0.016 3.4E-07 49.6 3.0 21 218-238 2-22 (119)
377 cd03234 ABCG_White The White s 95.2 0.017 3.7E-07 56.1 3.5 42 213-256 31-74 (226)
378 PRK14952 DNA polymerase III su 95.2 0.028 6E-07 63.3 5.6 56 161-240 5-60 (584)
379 TIGR03877 thermo_KaiC_1 KaiC d 95.2 0.019 4.2E-07 56.6 3.9 42 213-256 19-60 (237)
380 cd04163 Era Era subfamily. Er 95.2 0.02 4.3E-07 50.2 3.6 24 215-238 3-26 (168)
381 cd03266 ABC_NatA_sodium_export 95.2 0.016 3.5E-07 55.6 3.3 39 213-254 29-67 (218)
382 PRK09493 glnQ glutamine ABC tr 95.2 0.016 3.5E-07 56.6 3.3 41 213-256 25-65 (240)
383 PRK13886 conjugal transfer pro 95.2 0.088 1.9E-06 53.2 8.6 91 214-311 2-92 (241)
384 cd03245 ABCC_bacteriocin_expor 95.2 0.016 3.5E-07 55.7 3.2 41 213-256 28-68 (220)
385 TIGR01188 drrA daunorubicin re 95.2 0.026 5.6E-07 57.7 4.9 41 213-256 17-57 (302)
386 TIGR00635 ruvB Holliday juncti 95.2 0.025 5.4E-07 57.1 4.8 25 214-238 29-53 (305)
387 cd03228 ABCC_MRP_Like The MRP 95.2 0.017 3.6E-07 53.9 3.2 41 213-256 26-66 (171)
388 PRK13632 cbiO cobalt transport 95.1 0.026 5.7E-07 56.6 4.8 41 213-256 33-73 (271)
389 PRK13548 hmuV hemin importer A 95.1 0.026 5.7E-07 56.2 4.8 41 213-256 26-66 (258)
390 TIGR02524 dot_icm_DotB Dot/Icm 95.1 0.043 9.3E-07 58.2 6.6 98 216-322 135-234 (358)
391 PTZ00361 26 proteosome regulat 95.1 0.061 1.3E-06 58.6 7.9 26 213-238 215-240 (438)
392 PF13086 AAA_11: AAA domain; P 95.1 0.018 3.9E-07 54.1 3.4 24 215-238 17-40 (236)
393 PRK13540 cytochrome c biogenes 95.1 0.03 6.5E-07 53.4 5.0 41 213-256 25-65 (200)
394 PRK14247 phosphate ABC transpo 95.1 0.017 3.6E-07 56.9 3.3 42 213-256 27-72 (250)
395 COG0630 VirB11 Type IV secreto 95.1 0.069 1.5E-06 55.6 7.9 91 214-316 142-233 (312)
396 cd03222 ABC_RNaseL_inhibitor T 95.1 0.016 3.6E-07 55.4 3.1 37 214-253 24-60 (177)
397 PRK14970 DNA polymerase III su 95.1 0.035 7.5E-07 58.0 5.8 56 159-238 7-62 (367)
398 cd03232 ABC_PDR_domain2 The pl 95.1 0.017 3.7E-07 54.9 3.2 43 213-256 31-73 (192)
399 TIGR03771 anch_rpt_ABC anchore 95.1 0.03 6.4E-07 54.5 5.0 40 214-256 5-44 (223)
400 PRK14951 DNA polymerase III su 95.1 0.031 6.8E-07 63.3 5.8 55 160-238 7-61 (618)
401 PF05729 NACHT: NACHT domain 95.1 0.016 3.4E-07 51.8 2.8 22 217-238 2-23 (166)
402 PRK13649 cbiO cobalt transport 95.1 0.027 5.8E-07 56.6 4.7 41 213-256 31-71 (280)
403 KOG0058 Peptide exporter, ABC 95.1 0.15 3.3E-06 58.3 11.1 183 216-462 495-706 (716)
404 PRK13638 cbiO cobalt transport 95.1 0.028 6.1E-07 56.3 4.8 41 213-256 25-65 (271)
405 PF13173 AAA_14: AAA domain 95.1 0.02 4.4E-07 50.9 3.4 39 216-257 3-41 (128)
406 cd03233 ABC_PDR_domain1 The pl 95.1 0.018 3.8E-07 55.3 3.2 42 213-256 31-74 (202)
407 PRK11124 artP arginine transpo 95.1 0.018 3.9E-07 56.4 3.3 41 213-256 26-66 (242)
408 PRK06067 flagellar accessory p 95.0 0.021 4.6E-07 55.8 3.7 42 213-256 23-64 (234)
409 PF06745 KaiC: KaiC; InterPro 95.0 0.014 2.9E-07 56.6 2.4 41 214-256 18-59 (226)
410 COG0378 HypB Ni2+-binding GTPa 95.0 0.021 4.6E-07 56.2 3.6 43 213-258 10-53 (202)
411 PF07728 AAA_5: AAA domain (dy 95.0 0.016 3.5E-07 51.6 2.7 21 218-238 2-22 (139)
412 cd03280 ABC_MutS2 MutS2 homolo 95.0 0.018 3.8E-07 55.3 3.1 21 216-236 29-49 (200)
413 cd03223 ABCD_peroxisomal_ALDP 95.0 0.019 4.1E-07 53.6 3.2 39 212-253 24-62 (166)
414 TIGR02928 orc1/cdc6 family rep 95.0 0.019 4.2E-07 59.2 3.6 43 213-257 38-86 (365)
415 TIGR03881 KaiC_arch_4 KaiC dom 95.0 0.023 5E-07 55.1 3.9 41 214-256 19-59 (229)
416 PRK11248 tauB taurine transpor 95.0 0.018 3.9E-07 57.4 3.3 40 213-255 25-64 (255)
417 cd03248 ABCC_TAP TAP, the Tran 95.0 0.018 4E-07 55.6 3.2 41 213-256 38-78 (226)
418 TIGR01242 26Sp45 26S proteasom 95.0 0.074 1.6E-06 55.7 7.9 25 214-238 155-179 (364)
419 PRK08691 DNA polymerase III su 95.0 0.034 7.4E-07 63.7 5.7 55 160-238 7-61 (709)
420 PRK06645 DNA polymerase III su 95.0 0.027 5.9E-07 62.3 4.8 53 162-238 14-66 (507)
421 PRK13640 cbiO cobalt transport 95.0 0.031 6.8E-07 56.5 4.9 42 213-256 31-74 (282)
422 CHL00195 ycf46 Ycf46; Provisio 95.0 0.13 2.9E-06 56.7 10.1 39 213-256 257-295 (489)
423 cd03250 ABCC_MRP_domain1 Domai 95.0 0.019 4.2E-07 54.7 3.2 39 212-253 28-66 (204)
424 PRK05896 DNA polymerase III su 95.0 0.034 7.3E-07 62.8 5.5 55 160-238 7-61 (605)
425 cd03267 ABC_NatA_like Similar 95.0 0.019 4.1E-07 56.3 3.2 39 213-254 45-83 (236)
426 TIGR02324 CP_lyasePhnL phospho 95.0 0.02 4.3E-07 55.4 3.2 37 213-252 32-68 (224)
427 PRK14262 phosphate ABC transpo 95.0 0.019 4.1E-07 56.5 3.2 42 213-256 27-72 (250)
428 COG1131 CcmA ABC-type multidru 95.0 0.029 6.2E-07 57.6 4.6 39 212-253 28-66 (293)
429 PRK14241 phosphate transporter 95.0 0.02 4.2E-07 56.8 3.3 26 213-238 28-53 (258)
430 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 95.0 0.019 4.2E-07 56.0 3.2 38 213-253 46-83 (224)
431 COG2019 AdkA Archaeal adenylat 95.0 0.42 9.1E-06 46.5 12.0 24 215-238 4-27 (189)
432 TIGR00968 3a0106s01 sulfate AB 95.0 0.033 7.2E-07 54.6 4.9 41 213-256 24-64 (237)
433 PRK11701 phnK phosphonate C-P 95.0 0.019 4.1E-07 56.9 3.2 40 213-255 30-69 (258)
434 KOG1384 tRNA delta(2)-isopente 94.9 0.23 5E-06 52.4 11.1 85 214-311 6-108 (348)
435 PRK03695 vitamin B12-transport 94.9 0.031 6.8E-07 55.3 4.7 40 213-256 20-59 (248)
436 cd03281 ABC_MSH5_euk MutS5 hom 94.9 0.021 4.5E-07 55.9 3.3 22 215-236 29-50 (213)
437 PRK10418 nikD nickel transport 94.9 0.033 7.3E-07 55.1 4.8 42 213-256 27-71 (254)
438 cd03221 ABCF_EF-3 ABCF_EF-3 E 94.9 0.021 4.5E-07 52.2 3.1 38 213-253 24-61 (144)
439 PRK06305 DNA polymerase III su 94.9 0.039 8.5E-07 60.1 5.7 57 158-238 6-62 (451)
440 PRK08533 flagellar accessory p 94.9 0.027 5.8E-07 55.8 4.1 41 214-256 23-63 (230)
441 TIGR03411 urea_trans_UrtD urea 94.9 0.021 4.6E-07 55.8 3.3 41 213-256 26-66 (242)
442 PRK11247 ssuB aliphatic sulfon 94.9 0.02 4.3E-07 57.4 3.2 40 213-255 36-75 (257)
443 cd03273 ABC_SMC2_euk Eukaryoti 94.9 0.02 4.3E-07 56.8 3.1 24 214-237 24-47 (251)
444 cd03300 ABC_PotA_N PotA is an 94.9 0.035 7.6E-07 54.2 4.9 41 213-256 24-64 (232)
445 cd03278 ABC_SMC_barmotin Barmo 94.9 0.021 4.5E-07 55.1 3.2 20 217-236 24-43 (197)
446 cd00267 ABC_ATPase ABC (ATP-bi 94.9 0.022 4.8E-07 52.1 3.2 40 214-256 24-63 (157)
447 PLN00020 ribulose bisphosphate 94.9 0.073 1.6E-06 57.3 7.5 76 163-256 109-184 (413)
448 PRK10744 pstB phosphate transp 94.9 0.02 4.4E-07 56.9 3.2 26 213-238 37-62 (260)
449 PRK11614 livF leucine/isoleuci 94.9 0.021 4.5E-07 55.8 3.2 41 213-256 29-69 (237)
450 PF02881 SRP54_N: SRP54-type p 94.9 0.022 4.8E-07 46.4 2.9 51 112-185 21-71 (75)
451 PRK10751 molybdopterin-guanine 94.9 0.025 5.4E-07 54.3 3.7 25 214-238 5-29 (173)
452 PF13521 AAA_28: AAA domain; P 94.9 0.016 3.5E-07 53.3 2.3 21 218-238 2-22 (163)
453 COG1660 Predicted P-loop-conta 94.9 0.38 8.1E-06 49.6 12.2 103 366-478 81-192 (286)
454 PRK14239 phosphate transporter 94.9 0.021 4.6E-07 56.1 3.3 25 213-237 29-53 (252)
455 PRK13635 cbiO cobalt transport 94.9 0.035 7.6E-07 56.1 4.9 41 213-256 31-71 (279)
456 PRK13539 cytochrome c biogenes 94.9 0.022 4.8E-07 54.7 3.3 41 213-256 26-66 (207)
457 PRK14244 phosphate ABC transpo 94.9 0.021 4.6E-07 56.3 3.3 26 213-238 29-54 (251)
458 PRK14251 phosphate ABC transpo 94.9 0.021 4.6E-07 56.2 3.3 26 213-238 28-53 (251)
459 PRK09580 sufC cysteine desulfu 94.9 0.02 4.4E-07 56.0 3.1 43 213-256 25-67 (248)
460 TIGR02323 CP_lyasePhnK phospho 94.9 0.021 4.6E-07 56.2 3.2 38 213-253 27-64 (253)
461 TIGR03873 F420-0_ABC_ATP propo 94.9 0.037 8.1E-07 54.8 5.0 41 213-256 25-65 (256)
462 PRK11831 putative ABC transpor 94.9 0.021 4.6E-07 57.2 3.2 40 213-255 31-70 (269)
463 PRK14270 phosphate ABC transpo 94.8 0.022 4.8E-07 56.2 3.3 42 213-256 28-73 (251)
464 PRK14256 phosphate ABC transpo 94.8 0.022 4.7E-07 56.2 3.2 26 213-238 28-53 (252)
465 PRK15056 manganese/iron transp 94.8 0.022 4.7E-07 57.2 3.2 40 213-255 31-70 (272)
466 PF02492 cobW: CobW/HypB/UreG, 94.8 0.029 6.2E-07 53.0 3.9 21 217-237 2-22 (178)
467 PRK14240 phosphate transporter 94.8 0.022 4.8E-07 56.0 3.3 25 213-237 27-51 (250)
468 PRK13543 cytochrome c biogenes 94.8 0.033 7.1E-07 53.8 4.3 41 213-256 35-75 (214)
469 PRK00411 cdc6 cell division co 94.8 0.027 5.8E-07 58.8 4.0 42 214-257 54-97 (394)
470 cd03294 ABC_Pro_Gly_Bertaine T 94.8 0.022 4.8E-07 57.1 3.2 41 213-256 48-88 (269)
471 cd01983 Fer4_NifH The Fer4_Nif 94.8 0.023 5E-07 45.8 2.8 34 217-252 1-34 (99)
472 PRK14248 phosphate ABC transpo 94.8 0.023 4.9E-07 56.8 3.3 44 213-256 45-90 (268)
473 PRK14267 phosphate ABC transpo 94.8 0.023 4.9E-07 56.0 3.3 42 213-256 28-73 (253)
474 PF01443 Viral_helicase1: Vira 94.8 0.016 3.5E-07 55.6 2.2 21 218-238 1-21 (234)
475 PRK14261 phosphate ABC transpo 94.8 0.023 5E-07 56.1 3.3 25 213-237 30-54 (253)
476 PRK14245 phosphate ABC transpo 94.8 0.022 4.9E-07 56.1 3.2 25 213-237 27-51 (250)
477 cd03275 ABC_SMC1_euk Eukaryoti 94.8 0.021 4.6E-07 56.5 3.0 24 215-238 22-45 (247)
478 cd03290 ABCC_SUR1_N The SUR do 94.8 0.023 5E-07 54.7 3.2 40 213-255 25-64 (218)
479 PRK09984 phosphonate/organopho 94.8 0.023 5E-07 56.4 3.3 42 213-256 28-71 (262)
480 TIGR00972 3a0107s01c2 phosphat 94.8 0.023 5.1E-07 55.8 3.3 42 213-256 25-70 (247)
481 COG0464 SpoVK ATPases of the A 94.8 0.11 2.3E-06 56.7 8.6 26 213-238 274-299 (494)
482 PRK13637 cbiO cobalt transport 94.8 0.038 8.2E-07 56.2 4.8 41 213-256 31-71 (287)
483 cd03231 ABC_CcmA_heme_exporter 94.8 0.036 7.9E-07 53.0 4.4 41 213-256 24-64 (201)
484 cd03237 ABC_RNaseL_inhibitor_d 94.7 0.024 5.1E-07 56.6 3.2 37 214-253 24-60 (246)
485 PRK14274 phosphate ABC transpo 94.7 0.024 5.2E-07 56.3 3.2 26 213-238 36-61 (259)
486 PRK14255 phosphate ABC transpo 94.7 0.024 5.1E-07 55.9 3.2 27 212-238 28-54 (252)
487 TIGR03740 galliderm_ABC gallid 94.7 0.025 5.4E-07 54.7 3.3 39 213-254 24-62 (223)
488 PF01926 MMR_HSR1: 50S ribosom 94.7 0.025 5.5E-07 48.8 3.0 21 218-238 2-22 (116)
489 COG3839 MalK ABC-type sugar tr 94.7 0.034 7.5E-07 58.7 4.5 43 213-258 27-69 (338)
490 PRK15112 antimicrobial peptide 94.7 0.024 5.2E-07 56.8 3.2 42 212-256 36-77 (267)
491 PRK14253 phosphate ABC transpo 94.7 0.025 5.4E-07 55.6 3.3 26 213-238 27-52 (249)
492 PRK09544 znuC high-affinity zi 94.7 0.025 5.4E-07 56.4 3.3 26 213-238 28-53 (251)
493 PRK13633 cobalt transporter AT 94.7 0.041 8.9E-07 55.5 4.9 41 213-256 34-74 (280)
494 cd03279 ABC_sbcCD SbcCD and ot 94.7 0.023 4.9E-07 55.0 2.9 23 215-237 28-50 (213)
495 TIGR02538 type_IV_pilB type IV 94.7 0.069 1.5E-06 59.7 7.1 90 216-322 317-407 (564)
496 PHA03132 thymidine kinase; Pro 94.7 0.7 1.5E-05 52.3 14.8 24 215-238 257-280 (580)
497 CHL00131 ycf16 sulfate ABC tra 94.7 0.025 5.3E-07 55.7 3.1 43 213-256 31-73 (252)
498 cd03213 ABCG_EPDR ABCG transpo 94.7 0.027 5.8E-07 53.8 3.3 42 213-256 33-75 (194)
499 TIGR01288 nodI ATP-binding ABC 94.7 0.025 5.5E-07 57.8 3.3 40 213-255 28-67 (303)
500 cd03240 ABC_Rad50 The catalyti 94.7 0.024 5.1E-07 54.9 2.9 20 217-236 24-43 (204)
No 1
>COG4185 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.97 E-value=3.3e-31 Score=247.29 Aligned_cols=172 Identities=22% Similarity=0.188 Sum_probs=147.4
Q ss_pred CcEEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEecccccccchhhhhhhhccccCchhhHHHHHhHhHHHHHHHHH
Q 044777 214 SPVLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADAFKESDVIYRALSSRSHVDMLQTAELVHQSSTDAASSLL 293 (513)
Q Consensus 214 ~P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDefR~~~p~y~~l~~~G~~Dp~qaae~v~~eAtrlA~~li 293 (513)
+|++++|+|+|||||||+...+.... .++.++||+|++..+. ++ .+| ......+++.|...+
T Consensus 1 m~~l~IvaG~NGsGKstv~~~~~~~~-----~~~~~~VN~D~iA~~i------~p---~~p----~~~~i~A~r~ai~~i 62 (187)
T COG4185 1 MKRLDIVAGPNGSGKSTVYASTLAPL-----LPGIVFVNADEIAAQI------SP---DNP----TSAAIQAARVAIDRI 62 (187)
T ss_pred CceEEEEecCCCCCceeeeeccchhh-----cCCeEEECHHHHhhhc------CC---CCc----hHHHHHHHHHHHHHH
Confidence 58999999999999999998877762 3588999999996543 22 123 233456888899999
Q ss_pred HHHHHCCCcEEEECcCCChHHHHHHHHHHhhhhhcccccccccccccCCccccchhhhhhhhhhhhcccCCCCeEEEEEE
Q 044777 294 VTALNEGRDVIMDGTLSWVPFVVQTITMARNVHRHRYRMGVGYKKAEDGTVIENYWDRIGEREQAQDGKMRKPYRIELVG 373 (513)
Q Consensus 294 ~~aL~~GrsVIlDtTlS~~~~~~qii~~Ar~~h~~~y~~g~GYkv~~~g~~~e~Yw~~v~~a~~~~~~~~~~gYrI~Lv~ 373 (513)
..+++.|.+|++|||||++++++.+.+ | +++||-|.|.|
T Consensus 63 ~~~I~~~~~F~~ETtLS~~s~~~~ik~-A----------------------------------------k~~Gf~I~L~y 101 (187)
T COG4185 63 ARLIDLGRPFIAETTLSGPSILELIKT-A----------------------------------------KAAGFYIVLNY 101 (187)
T ss_pred HHHHHcCCCcceEEeeccchHHHHHHH-H----------------------------------------HhCCeEEEEEE
Confidence 999999999999999999999774433 2 67999999988
Q ss_pred Ee-cChHHHHHHHHHHHHhcCCcCchhHHHHHHHHHHHHHHHhhcccceEEEEecCCCCCCCceEEEeeCCcee
Q 044777 374 VV-CDAYLAVVRGIRRAIMCRRAVRVKSQLKSHKRFANAFLTYCQLVDSARLYSTNALEGPPKLIGWKERDRTL 446 (513)
Q Consensus 374 V~-~dpelAv~Rv~~Rv~~gGh~VP~~~il~r~~rf~~nf~~~~~lvD~a~lyDNs~~~~~p~LIa~k~~~~~~ 446 (513)
++ .++++|++|+..||..|||+||+++|++||.|+.+++.+++.+||++++||||+. .|+|++++.++...
T Consensus 102 ~~i~~~elavERVk~RVa~GGH~IpED~Ir~RY~rsle~l~~~l~l~dr~~IydNS~~--~~~lv~e~~~~~i~ 173 (187)
T COG4185 102 IVIDSVELAVERVKLRVAKGGHDIPEDKIRRRYRRSLELLAQALTLADRATIYDNSRL--APRLVAEFSGGGII 173 (187)
T ss_pred EEeCcHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHHHhhcceeEEecCCCC--CceEEEEeCCceEE
Confidence 75 6899999999999999999999999999999999999999999999999999996 39999999987644
No 2
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=99.96 E-value=8.5e-29 Score=235.72 Aligned_cols=173 Identities=25% Similarity=0.362 Sum_probs=133.1
Q ss_pred CCCCCcEEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEecccccccchhhhhhhhccccCchhhHHHHHhHhHHHHH
Q 044777 210 LGDRSPVLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADAFKESDVIYRALSSRSHVDMLQTAELVHQSSTDAA 289 (513)
Q Consensus 210 ~~~~~P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDefR~~~p~y~~l~~~G~~Dp~qaae~v~~eAtrlA 289 (513)
++..+|++++++|+|||||||++..+... +. ..+.++||+|+||..+|.|.++... ++..++..++.++..++
T Consensus 10 ~~~~~P~~~i~aG~~GsGKSt~~~~~~~~--~~--~~~~v~i~~D~~r~~~p~~~~~~~~---~~~~~~~~~~~~a~~~~ 82 (199)
T PF06414_consen 10 PPQEKPTLIIIAGQPGSGKSTLARQLLEE--FG--GGGIVVIDADEFRQFHPDYDELLKA---DPDEASELTQKEASRLA 82 (199)
T ss_dssp ---SS-EEEEEES-TTSTTHHHHHHHHHH--T---TT-SEEE-GGGGGGGSTTHHHHHHH---HCCCTHHHHHHHHHHHH
T ss_pred CcccCCEEEEEeCCCCCCHHHHHHHhhhh--cc--CCCeEEEehHHHHHhccchhhhhhh---hhhhhHHHHHHHHHHHH
Confidence 35689999999999999999999999886 21 4789999999999999999876553 22345677888999999
Q ss_pred HHHHHHHHHCCCcEEEECcCCChHHHHHHHHHHhhhhhcccccccccccccCCccccchhhhhhhhhhhhcccCCCCeEE
Q 044777 290 SSLLVTALNEGRDVIMDGTLSWVPFVVQTITMARNVHRHRYRMGVGYKKAEDGTVIENYWDRIGEREQAQDGKMRKPYRI 369 (513)
Q Consensus 290 ~~li~~aL~~GrsVIlDtTlS~~~~~~qii~~Ar~~h~~~y~~g~GYkv~~~g~~~e~Yw~~v~~a~~~~~~~~~~gYrI 369 (513)
..+++.++++|.|||+|+||+++++..++++.+ +++||+|
T Consensus 83 ~~~~~~a~~~~~nii~E~tl~~~~~~~~~~~~~----------------------------------------k~~GY~v 122 (199)
T PF06414_consen 83 EKLIEYAIENRYNIIFEGTLSNPSKLRKLIREA----------------------------------------KAAGYKV 122 (199)
T ss_dssp HHHHHHHHHCT--EEEE--TTSSHHHHHHHHHH----------------------------------------HCTT-EE
T ss_pred HHHHHHHHHcCCCEEEecCCCChhHHHHHHHHH----------------------------------------HcCCceE
Confidence 999999999999999999999999988877755 5589999
Q ss_pred EEEEEecChHHHHHHHHHHHHhc------CCcCchhHHHHHHHHHHHHHHHhhc--ccceEEEEecCC
Q 044777 370 ELVGVVCDAYLAVVRGIRRAIMC------RRAVRVKSQLKSHKRFANAFLTYCQ--LVDSARLYSTNA 429 (513)
Q Consensus 370 ~Lv~V~~dpelAv~Rv~~Rv~~g------Gh~VP~~~il~r~~rf~~nf~~~~~--lvD~a~lyDNs~ 429 (513)
+|++|.+++++++.|+..|+.++ ||.||.+.+..+|..+..++..... ++|++.+|||++
T Consensus 123 ~l~~v~~~~e~s~~rv~~R~~~~~~~~g~GR~v~~~~~~~~~~~~~~~~~~~~~~~~~d~i~v~d~~g 190 (199)
T PF06414_consen 123 ELYYVAVPPELSIERVRQRYEEGLQAKGIGRFVPEEKHDRAYANLPETLEALENEKLFDRITVYDRDG 190 (199)
T ss_dssp EEEEE---HHHHHHHHHHHHHHHC-C-TT-----HCCCHCCHHHHHHHHHHHHHCT--SEEEEE-TTS
T ss_pred EEEEEECCHHHHHHHHHHHHHccccccCCCcCCCHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCC
Confidence 99999999999999999999999 9999999999999999999998776 999999999987
No 3
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=99.61 E-value=4.2e-15 Score=132.02 Aligned_cols=137 Identities=21% Similarity=0.185 Sum_probs=94.4
Q ss_pred EEEEecCCCCchHHHHHHHhcCcccccCCCCeEEecccccccchhhhhhhhccccCchhhHHHHHhHhHHHHHHHHHHHH
Q 044777 217 LLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADAFKESDVIYRALSSRSHVDMLQTAELVHQSSTDAASSLLVTA 296 (513)
Q Consensus 217 LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDefR~~~p~y~~l~~~G~~Dp~qaae~v~~eAtrlA~~li~~a 296 (513)
||+|+|+|||||||+++.+.+. .+.++|+.|+++..+... ...... +.. + ........+...+..+
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~-------~~~~~i~~D~~~~~~~~~--~~~~~~-~~~---~-~~~~~~~~~~~~~~~~ 66 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKR-------LGAVVISQDEIRRRLAGE--DPPSPS-DYI---E-AEERAYQILNAAIRKA 66 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH-------STEEEEEHHHHHHHHCCS--SSGCCC-CCH---H-HHHHHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH-------CCCEEEeHHHHHHHHccc--ccccch-hHH---H-HHHHHHHHHHHHHHHH
Confidence 6899999999999999999976 358899999997543210 000000 111 1 1112334555667888
Q ss_pred HHCCCcEEEECcCCChHHHHHHHHHHhhhhhcccccccccccccCCccccchhhhhhhhhhhhcccCCCCeEEEEEEEec
Q 044777 297 LNEGRDVIMDGTLSWVPFVVQTITMARNVHRHRYRMGVGYKKAEDGTVIENYWDRIGEREQAQDGKMRKPYRIELVGVVC 376 (513)
Q Consensus 297 L~~GrsVIlDtTlS~~~~~~qii~~Ar~~h~~~y~~g~GYkv~~~g~~~e~Yw~~v~~a~~~~~~~~~~gYrI~Lv~V~~ 376 (513)
+..|.++|+|+|+..+..+..+.+++ +..||.+.++++.+
T Consensus 67 l~~g~~~vvd~~~~~~~~r~~~~~~~----------------------------------------~~~~~~~~~v~l~~ 106 (143)
T PF13671_consen 67 LRNGNSVVVDNTNLSREERARLRELA----------------------------------------RKHGYPVRVVYLDA 106 (143)
T ss_dssp HHTT-EEEEESS--SHHHHHHHHHHH----------------------------------------HHCTEEEEEEEECH
T ss_pred HHcCCCceeccCcCCHHHHHHHHHHH----------------------------------------HHcCCeEEEEEEEC
Confidence 99999999999999988887776655 34688889999999
Q ss_pred ChHHHHHHHHHHHHhcCCc--CchhHHHHHHHH
Q 044777 377 DAYLAVVRGIRRAIMCRRA--VRVKSQLKSHKR 407 (513)
Q Consensus 377 dpelAv~Rv~~Rv~~gGh~--VP~~~il~r~~r 407 (513)
++++..+|...|...+++. +|.+.+.+.++.
T Consensus 107 ~~~~~~~R~~~R~~~~~~~~~~~~~~~~~~~~~ 139 (143)
T PF13671_consen 107 PEETLRERLAQRNREGDKRFEVPEEVFDRMLAR 139 (143)
T ss_dssp HHHHHHHHHHTTHCCCTTS----HHHHHHHHHH
T ss_pred CHHHHHHHHHhcCCcccccccCcHHHHHHHHHh
Confidence 9999999999999887763 555554444443
No 4
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=99.59 E-value=1.9e-14 Score=144.15 Aligned_cols=143 Identities=20% Similarity=0.116 Sum_probs=104.7
Q ss_pred CcEEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEecccccccchhhhhhhhccccCchhhHHHHHhHhHHHHHHHHH
Q 044777 214 SPVLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADAFKESDVIYRALSSRSHVDMLQTAELVHQSSTDAASSLL 293 (513)
Q Consensus 214 ~P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDefR~~~p~y~~l~~~G~~Dp~qaae~v~~eAtrlA~~li 293 (513)
+|.+|++.|+|||||||+++.|++. + .++++|+.|.++..+..-..... ..+.+ +.... ........+
T Consensus 1 m~~liil~G~pGSGKSTla~~L~~~--~----~~~~~l~~D~~r~~~~~~~~~~~-~~~~~-~~~~~----~~~~~~~~~ 68 (300)
T PHA02530 1 MMKIILTVGVPGSGKSTWAREFAAK--N----PKAVNVNRDDLRQSLFGHGEWGE-YKFTK-EKEDL----VTKAQEAAA 68 (300)
T ss_pred CcEEEEEEcCCCCCHHHHHHHHHHH--C----CCCEEEeccHHHHHhcCCCcccc-cccCh-HHHHH----HHHHHHHHH
Confidence 4789999999999999999999987 1 27889999999865321100000 01111 00111 123344556
Q ss_pred HHHHHCCCcEEEECcCCChHHHHHHHHHHhhhhhcccccccccccccCCccccchhhhhhhhhhhhcccCCCCeEEEEEE
Q 044777 294 VTALNEGRDVIMDGTLSWVPFVVQTITMARNVHRHRYRMGVGYKKAEDGTVIENYWDRIGEREQAQDGKMRKPYRIELVG 373 (513)
Q Consensus 294 ~~aL~~GrsVIlDtTlS~~~~~~qii~~Ar~~h~~~y~~g~GYkv~~~g~~~e~Yw~~v~~a~~~~~~~~~~gYrI~Lv~ 373 (513)
..++.+|.+||+|+|+..+..+..+.+++ +..|+.+.+++
T Consensus 69 ~~~l~~g~~vIid~~~~~~~~~~~~~~la----------------------------------------~~~~~~~~~v~ 108 (300)
T PHA02530 69 LAALKSGKSVIISDTNLNPERRRKWKELA----------------------------------------KELGAEFEEKV 108 (300)
T ss_pred HHHHHcCCeEEEeCCCCCHHHHHHHHHHH----------------------------------------HHcCCeEEEEE
Confidence 77889999999999999988887666655 23567778888
Q ss_pred EecChHHHHHHHHHHHHhcCCcCchhHHHHHHHHHHHH
Q 044777 374 VVCDAYLAVVRGIRRAIMCRRAVRVKSQLKSHKRFANA 411 (513)
Q Consensus 374 V~~dpelAv~Rv~~Rv~~gGh~VP~~~il~r~~rf~~n 411 (513)
+.+|.+.+.+|...| ++|.+|.+.+.+.|+++...
T Consensus 109 l~~~~e~~~~R~~~R---~~~~~~~~~i~~~~~~~~~~ 143 (300)
T PHA02530 109 FDVPVEELVKRNRKR---GERAVPEDVLRSMFKQMKEY 143 (300)
T ss_pred eCCCHHHHHHHHHcc---CcCCCCHHHHHHHHHHHHHh
Confidence 889999999999999 79999999999888887764
No 5
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=99.47 E-value=3.2e-13 Score=139.29 Aligned_cols=184 Identities=16% Similarity=0.269 Sum_probs=129.7
Q ss_pred hHHHHHHHHHHhhccCccchhhhhhcCCCCcchHHHHHHHHHHHHhhhhhhhccchhhHHHHHhhcCCCchhhhhHHHHH
Q 044777 81 PQLCKLAAEYIRKSEGCEDDIYTFFSSEPAADSLFIKLVEEFERCILSYFAFHWSHADLMISQVLNSDAEPKKKLKHIVM 160 (513)
Q Consensus 81 ~~~~~l~~~~l~~s~~~~~~i~~~~~~~~~~~~l~~~~~eele~~~~~~~~~~~~~~~~li~~~l~~~~~~~~~~~~~v~ 160 (513)
....++..++.++++.+..++...|.... .+.++..++||||+ .||++|+|.++. ..|+
T Consensus 32 ~~~~~~~~gl~k~~~~~~~~~~~~~~~~~-~~~~de~~~eeLE~--------------~Li~aDvg~e~~------~~i~ 90 (340)
T COG0552 32 GWFERLKQGLSKTKKNFGKGIKGLFLKKI-KEKLDEDLLEELEE--------------LLIEADVGVETA------EEII 90 (340)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhhhcccc-ccchhHHHHHHHHH--------------HHHHccccHHHH------HHHH
Confidence 35789999998888888887765553321 12245555699999 999999999888 9999
Q ss_pred HHHHhH--HHHhhhhhhHHHHHHHHHHHHHHHhcCCCCCCcccchhcccccC--------CCCCcEEEEEecCCCCchHH
Q 044777 161 QATREQ--RFERVTKNLKVARVFTTLVEEMKAMGLAPNDDSQCTEVMAPVAL--------GDRSPVLLFMGGGMGAGKST 230 (513)
Q Consensus 161 ~a~r~~--rf~r~~~~~~v~r~~~~~ve~~~~~~~~~~~~~~~~~vl~p~~~--------~~~~P~LILmaG~pGAGKST 230 (513)
+.+|+. +-+++.+...++.++...+ .+++.|+.. ...+|.+|++.|.||+||||
T Consensus 91 ~~l~~~~~~~~~~~~~~~v~~~l~~~l----------------~~il~~~~~~~~~~~~~~~~~p~Vil~vGVNG~GKTT 154 (340)
T COG0552 91 EELRKREGKKKKIKDEETVKEALREAL----------------IEILRPVDKVDLPLEIPKEKKPFVILFVGVNGVGKTT 154 (340)
T ss_pred HHHHHHhcccccCCCHHHHHHHHHHHH----------------HHHhcccccccchhhhccCCCcEEEEEEecCCCchHh
Confidence 999994 4445656888888888887 344444322 14579999999999999999
Q ss_pred HHHHHhcCcccccCCCCeEEeccccccc----chhhhhhhhccccCchhhHHHHHhHhHHHHHHHHHHHHHHCCCcEEEE
Q 044777 231 VLKDILKEPFWAGAAGNAVVIEADAFKE----SDVIYRALSSRSHVDMLQTAELVHQSSTDAASSLLVTALNEGRDVIMD 306 (513)
Q Consensus 231 la~~Ll~~~f~~~~~~~aVvInaDefR~----~~p~y~~l~~~G~~Dp~qaae~v~~eAtrlA~~li~~aL~~GrsVIlD 306 (513)
.+..|+.. +.+.+..+++..+|+||. ++..|.......... . ..-+ ..+..+-..++.|..+|.+||+=
T Consensus 155 TIaKLA~~--l~~~g~~VllaA~DTFRAaAiEQL~~w~er~gv~vI~--~--~~G~-DpAaVafDAi~~Akar~~Dvvli 227 (340)
T COG0552 155 TIAKLAKY--LKQQGKSVLLAAGDTFRAAAIEQLEVWGERLGVPVIS--G--KEGA-DPAAVAFDAIQAAKARGIDVVLI 227 (340)
T ss_pred HHHHHHHH--HHHCCCeEEEEecchHHHHHHHHHHHHHHHhCCeEEc--c--CCCC-CcHHHHHHHHHHHHHcCCCEEEE
Confidence 99999885 556667778889999994 666665433210000 0 0001 11235566788999999987765
Q ss_pred Cc
Q 044777 307 GT 308 (513)
Q Consensus 307 tT 308 (513)
.|
T Consensus 228 DT 229 (340)
T COG0552 228 DT 229 (340)
T ss_pred eC
Confidence 55
No 6
>PRK06762 hypothetical protein; Provisional
Probab=99.45 E-value=4.8e-13 Score=122.98 Aligned_cols=133 Identities=14% Similarity=0.097 Sum_probs=92.1
Q ss_pred CcEEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEecccccccchhhhhhhhccccCchhhHHHHHhHhHHHHHHHHH
Q 044777 214 SPVLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADAFKESDVIYRALSSRSHVDMLQTAELVHQSSTDAASSLL 293 (513)
Q Consensus 214 ~P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDefR~~~p~y~~l~~~G~~Dp~qaae~v~~eAtrlA~~li 293 (513)
+|.+|+|+|+|||||||+++.|.+. + +.++++++.|.++..+-. .....+. .+......++
T Consensus 1 m~~li~i~G~~GsGKST~A~~L~~~--l---~~~~~~i~~D~~r~~l~~--~~~~~~~------------~~~~~~~~~~ 61 (166)
T PRK06762 1 MTTLIIIRGNSGSGKTTIAKQLQER--L---GRGTLLVSQDVVRRDMLR--VKDGPGN------------LSIDLIEQLV 61 (166)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH--h---CCCeEEecHHHHHHHhcc--ccCCCCC------------cCHHHHHHHH
Confidence 5899999999999999999999886 1 247889999999853310 0000000 0112233455
Q ss_pred HHHHHCCCcEEEECcCCChHHHHHHHHHHhhhhhcccccccccccccCCccccchhhhhhhhhhhhcccCCCCeEEEEEE
Q 044777 294 VTALNEGRDVIMDGTLSWVPFVVQTITMARNVHRHRYRMGVGYKKAEDGTVIENYWDRIGEREQAQDGKMRKPYRIELVG 373 (513)
Q Consensus 294 ~~aL~~GrsVIlDtTlS~~~~~~qii~~Ar~~h~~~y~~g~GYkv~~~g~~~e~Yw~~v~~a~~~~~~~~~~gYrI~Lv~ 373 (513)
..+++.|.+||+|+++....+...+..++ ...++++.+++
T Consensus 62 ~~~~~~g~~vild~~~~~~~~~~~~~~l~----------------------------------------~~~~~~~~~v~ 101 (166)
T PRK06762 62 RYGLGHCEFVILEGILNSDRYGPMLKELI----------------------------------------HLFRGNAYTYY 101 (166)
T ss_pred HHHHhCCCEEEEchhhccHhHHHHHHHHH----------------------------------------HhcCCCeEEEE
Confidence 56788999999999987655544332222 22455677888
Q ss_pred EecChHHHHHHHHHHHHhcCCcCchhHHHHHHHH
Q 044777 374 VVCDAYLAVVRGIRRAIMCRRAVRVKSQLKSHKR 407 (513)
Q Consensus 374 V~~dpelAv~Rv~~Rv~~gGh~VP~~~il~r~~r 407 (513)
+.+|++.+++|...|. .+|.+|.+.+.+.|..
T Consensus 102 Ldap~e~~~~R~~~R~--~~~~~~~~~l~~~~~~ 133 (166)
T PRK06762 102 FDLSFEETLRRHSTRP--KSHEFGEDDMRRWWNP 133 (166)
T ss_pred EeCCHHHHHHHHhccc--ccccCCHHHHHHHHhh
Confidence 9999999999999995 3688888777766544
No 7
>TIGR01663 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase. Note that the EC number for the kinase function is: 2.7.1.78
Probab=99.42 E-value=1.3e-12 Score=142.66 Aligned_cols=108 Identities=18% Similarity=0.091 Sum_probs=89.9
Q ss_pred CCCcEEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEecccccccchhhhhhhhccccCchhhHHHHHhHhHHHHHHH
Q 044777 212 DRSPVLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADAFKESDVIYRALSSRSHVDMLQTAELVHQSSTDAASS 291 (513)
Q Consensus 212 ~~~P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDefR~~~p~y~~l~~~G~~Dp~qaae~v~~eAtrlA~~ 291 (513)
..+|.||+|+|+|||||||+++.++.. .++++||.|.+.. | ..+..
T Consensus 366 ~~~p~LVil~G~pGSGKST~A~~l~~~-------~g~~~vn~D~lg~----~-----------------------~~~~~ 411 (526)
T TIGR01663 366 DAPCEMVIAVGFPGAGKSHFCKKFFQP-------AGYKHVNADTLGS----T-----------------------QNCLT 411 (526)
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHHH-------cCCeEECcHHHHH----H-----------------------HHHHH
Confidence 467999999999999999999999986 4788999998821 0 11223
Q ss_pred HHHHHHHCCCcEEEECcCCChHHHHHHHHHHhhhhhcccccccccccccCCccccchhhhhhhhhhhhcccCCCCeEEEE
Q 044777 292 LLVTALNEGRDVIMDGTLSWVPFVVQTITMARNVHRHRYRMGVGYKKAEDGTVIENYWDRIGEREQAQDGKMRKPYRIEL 371 (513)
Q Consensus 292 li~~aL~~GrsVIlDtTlS~~~~~~qii~~Ar~~h~~~y~~g~GYkv~~~g~~~e~Yw~~v~~a~~~~~~~~~~gYrI~L 371 (513)
.+.++|.+|++||+|+|+.++..+..++++|+ +.|+.+.+
T Consensus 412 ~a~~~L~~G~sVVIDaTn~~~~~R~~~i~lAk----------------------------------------~~gv~v~~ 451 (526)
T TIGR01663 412 ACERALDQGKRCAIDNTNPDAASRAKFLQCAR----------------------------------------AAGIPCRC 451 (526)
T ss_pred HHHHHHhCCCcEEEECCCCCHHHHHHHHHHHH----------------------------------------HcCCeEEE
Confidence 46789999999999999999999998888773 46778889
Q ss_pred EEEecChHHHHHHHHHHHHhcC
Q 044777 372 VGVVCDAYLAVVRGIRRAIMCR 393 (513)
Q Consensus 372 v~V~~dpelAv~Rv~~Rv~~gG 393 (513)
+++.+|.+++..|...|.....
T Consensus 452 i~~~~p~e~~~~Rn~~R~~~~~ 473 (526)
T TIGR01663 452 FLFNAPLAQAKHNIAFRELSDS 473 (526)
T ss_pred EEeCCCHHHHHHHHHhhccCCc
Confidence 9999999999999999976433
No 8
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=99.35 E-value=7.4e-12 Score=123.28 Aligned_cols=132 Identities=20% Similarity=0.259 Sum_probs=93.6
Q ss_pred EEEEecCCCCchHHHHHHHhcCcccccCCCCeEEecccccccchhhhhhhhccccCchhhHHHHHhHhHHHHHHHHHHHH
Q 044777 217 LLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADAFKESDVIYRALSSRSHVDMLQTAELVHQSSTDAASSLLVTA 296 (513)
Q Consensus 217 LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDefR~~~p~y~~l~~~G~~Dp~qaae~v~~eAtrlA~~li~~a 296 (513)
||+|+|+|||||||+++.|.+. +...+.++++++.|.+++.++.|.. . ............+..+
T Consensus 1 LIvl~G~pGSGKST~a~~La~~--l~~~~~~v~~i~~D~lr~~~~~~~~--~------------~e~~~~~~~~~~i~~~ 64 (249)
T TIGR03574 1 LIILTGLPGVGKSTFSKELAKK--LSEKNIDVIILGTDLIRESFPVWKE--K------------YEEFIRDSTLYLIKTA 64 (249)
T ss_pred CEEEEcCCCCCHHHHHHHHHHH--HHHcCCceEEEccHHHHHHhHHhhH--H------------hHHHHHHHHHHHHHHH
Confidence 5899999999999999999875 2223456788999999876544321 0 0011223334567888
Q ss_pred HHCCCcEEEECcCCChHHHHHHHHHHhhhhhcccccccccccccCCccccchhhhhhhhhhhhcccCCCCeEEEEEEEec
Q 044777 297 LNEGRDVIMDGTLSWVPFVVQTITMARNVHRHRYRMGVGYKKAEDGTVIENYWDRIGEREQAQDGKMRKPYRIELVGVVC 376 (513)
Q Consensus 297 L~~GrsVIlDtTlS~~~~~~qii~~Ar~~h~~~y~~g~GYkv~~~g~~~e~Yw~~v~~a~~~~~~~~~~gYrI~Lv~V~~ 376 (513)
++.|..||+|++....+++.++..+|+ ..|+...++++.+
T Consensus 65 l~~~~~VI~D~~~~~~~~r~~l~~~ak----------------------------------------~~~~~~~~I~l~~ 104 (249)
T TIGR03574 65 LKNKYSVIVDDTNYYNSMRRDLINIAK----------------------------------------EYNKNYIIIYLKA 104 (249)
T ss_pred HhCCCeEEEeccchHHHHHHHHHHHHH----------------------------------------hCCCCEEEEEecC
Confidence 999999999999877777766666553 2344556788889
Q ss_pred ChHHHHHHHHHHHHhcCCcCchhHHHHHHHHH
Q 044777 377 DAYLAVVRGIRRAIMCRRAVRVKSQLKSHKRF 408 (513)
Q Consensus 377 dpelAv~Rv~~Rv~~gGh~VP~~~il~r~~rf 408 (513)
|++.++.|...| |+.+|.+.+.+.+.+|
T Consensus 105 p~e~~~~Rn~~R----~~~~~~~~i~~l~~r~ 132 (249)
T TIGR03574 105 PLDTLLRRNIER----GEKIPNEVIKDMYEKF 132 (249)
T ss_pred CHHHHHHHHHhC----CCCCCHHHHHHHHHhh
Confidence 999999998776 5677877666555544
No 9
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=99.32 E-value=4.6e-11 Score=109.54 Aligned_cols=148 Identities=11% Similarity=0.034 Sum_probs=91.2
Q ss_pred EEEecCCCCchHHHHHHHhcCcccccCCCCeEEecccccccchhhhhhhhccccCchhhHHHHHhHhHHHHHHHHHHHHH
Q 044777 218 LFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADAFKESDVIYRALSSRSHVDMLQTAELVHQSSTDAASSLLVTAL 297 (513)
Q Consensus 218 ILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDefR~~~p~y~~l~~~G~~Dp~qaae~v~~eAtrlA~~li~~aL 297 (513)
|+|.|+|||||||+++.|... .+.++|+.|.+.............+..+ + . ...........+...+
T Consensus 1 i~l~G~~GsGKSTla~~l~~~-------l~~~~v~~D~~~~~~~~~~~~~~~~~~~--~--~--~~~~~~~~~~~~~~~l 67 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHR-------LGAKFIEGDDLHPAANIEKMSAGIPLND--D--D--RWPWLQNLNDASTAAA 67 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHh-------cCCeEEeCccccChHHHHHHHcCCCCCh--h--h--HHHHHHHHHHHHHHHH
Confidence 478999999999999999987 4578999999853321111111110001 0 0 0111122233455677
Q ss_pred HCCCcEEEECcCCChHHHHHHHHHHhhhhhcccccccccccccCCccccchhhhhhhhhhhhcccCCCCeEEEEEEEecC
Q 044777 298 NEGRDVIMDGTLSWVPFVVQTITMARNVHRHRYRMGVGYKKAEDGTVIENYWDRIGEREQAQDGKMRKPYRIELVGVVCD 377 (513)
Q Consensus 298 ~~GrsVIlDtTlS~~~~~~qii~~Ar~~h~~~y~~g~GYkv~~~g~~~e~Yw~~v~~a~~~~~~~~~~gYrI~Lv~V~~d 377 (513)
..|.++|+++|+..+.++..+ +..+..+.++++.+|
T Consensus 68 ~~~~~~Vi~~t~~~~~~r~~~--------------------------------------------~~~~~~~~~i~l~~~ 103 (163)
T TIGR01313 68 AKNKVGIITCSALKRHYRDIL--------------------------------------------REAEPNLHFIYLSGD 103 (163)
T ss_pred hcCCCEEEEecccHHHHHHHH--------------------------------------------HhcCCCEEEEEEeCC
Confidence 788888999997665554322 113445677888899
Q ss_pred hHHHHHHHHHHHHhcCCcCchhHHHHHHHHHHHHHHHhhcccceEEEEecCC
Q 044777 378 AYLAVVRGIRRAIMCRRAVRVKSQLKSHKRFANAFLTYCQLVDSARLYSTNA 429 (513)
Q Consensus 378 pelAv~Rv~~Rv~~gGh~VP~~~il~r~~rf~~nf~~~~~lvD~a~lyDNs~ 429 (513)
++...+|...| +||.+|.+.+.+.|..+. .....-.++.++||+.
T Consensus 104 ~e~~~~R~~~R---~~~~~~~~~i~~~~~~~~----~~~~~e~~~~~id~~~ 148 (163)
T TIGR01313 104 KDVILERMKAR---KGHFMKADMLESQFAALE----EPLADETDVLRVDIDQ 148 (163)
T ss_pred HHHHHHHHHhc---cCCCCCHHHHHHHHHHhC----CCCCCCCceEEEECCC
Confidence 99999999999 377778777766665432 1111002467888776
No 10
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=99.31 E-value=4.3e-11 Score=108.09 Aligned_cols=132 Identities=15% Similarity=0.062 Sum_probs=82.7
Q ss_pred EEEEecCCCCchHHHHHHHhcCcccccCCCCeEEecccccccchhhhhhhhccccC-chhhHHHHHhHhHHHHHHHHHHH
Q 044777 217 LLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADAFKESDVIYRALSSRSHV-DMLQTAELVHQSSTDAASSLLVT 295 (513)
Q Consensus 217 LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDefR~~~p~y~~l~~~G~~-Dp~qaae~v~~eAtrlA~~li~~ 295 (513)
+++|.|+|||||||+++.|.+. .+..+|+.|.++....... ...|.. +......+ ...........
T Consensus 1 li~l~G~~GsGKST~a~~l~~~-------~~~~~i~~D~~~~~~~~~~--~~~~~~~~~~~~~~~----~~~~~~~~~~~ 67 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAER-------LGAPFIDGDDLHPPANIAK--MAAGIPLNDEDRWPW----LQALTDALLAK 67 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhh-------cCCEEEeCcccccHHHHHH--HHcCCCCCccchhhH----HHHHHHHHHHH
Confidence 5899999999999999999886 4678999999986422100 010111 00000011 11111122223
Q ss_pred HHHCCCcEEEECcCCChHHHHHHHHHHhhhhhcccccccccccccCCccccchhhhhhhhhhhhcccCCCCeEEEEEEEe
Q 044777 296 ALNEGRDVIMDGTLSWVPFVVQTITMARNVHRHRYRMGVGYKKAEDGTVIENYWDRIGEREQAQDGKMRKPYRIELVGVV 375 (513)
Q Consensus 296 aL~~GrsVIlDtTlS~~~~~~qii~~Ar~~h~~~y~~g~GYkv~~~g~~~e~Yw~~v~~a~~~~~~~~~~gYrI~Lv~V~ 375 (513)
.+..|.++|+|+++....++..+.++ . .|+.+.++++.
T Consensus 68 l~~~~~~vVid~~~~~~~~r~~~~~~-----------------------------------------~-~~~~~~~v~l~ 105 (150)
T cd02021 68 LASAGEGVVVACSALKRIYRDILRGG-----------------------------------------A-ANPRVRFVHLD 105 (150)
T ss_pred HHhCCCCEEEEeccccHHHHHHHHhc-----------------------------------------C-CCCCEEEEEEE
Confidence 33689999999999776554433221 1 35567788999
Q ss_pred cChHHHHHHHHHHHHhcCCcCchhHHHHHHH
Q 044777 376 CDAYLAVVRGIRRAIMCRRAVRVKSQLKSHK 406 (513)
Q Consensus 376 ~dpelAv~Rv~~Rv~~gGh~VP~~~il~r~~ 406 (513)
||+++..+|...| .++..|...+...+.
T Consensus 106 ~~~~~~~~R~~~R---~~~~~~~~~~~~~~~ 133 (150)
T cd02021 106 GPREVLAERLAAR---KGHFMPADLLDSQFE 133 (150)
T ss_pred CCHHHHHHHHHhc---ccCCCCHHHHHHHHH
Confidence 9999999999999 466677555554443
No 11
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=99.30 E-value=2.3e-11 Score=125.47 Aligned_cols=139 Identities=17% Similarity=0.363 Sum_probs=99.6
Q ss_pred HHHHHHHHHHhhccCccchhhhhhcCCCCcchHHHHHHHHHHHHhhhhhhhccchhhHHHHHhhcCCCchhhhhHHHHHH
Q 044777 82 QLCKLAAEYIRKSEGCEDDIYTFFSSEPAADSLFIKLVEEFERCILSYFAFHWSHADLMISQVLNSDAEPKKKLKHIVMQ 161 (513)
Q Consensus 82 ~~~~l~~~~l~~s~~~~~~i~~~~~~~~~~~~l~~~~~eele~~~~~~~~~~~~~~~~li~~~l~~~~~~~~~~~~~v~~ 161 (513)
-+.+|..++.++.+++.+.|..+|.+.+ ++.++++|||+ .||.++++.+.+ ..+++
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~~~~~~~l~~--------------~L~~~dv~~~~a------~~i~~ 71 (318)
T PRK10416 16 WFERLKKGLSKTRENFGEGINGLFAKKK----IDEDLLEELEE--------------LLIEADVGVETT------EEIIE 71 (318)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCC----CCHHHHHHHHH--------------HHHHCCCCHHHH------HHHHH
Confidence 4578999999999999999999998777 44566699999 999999998877 88888
Q ss_pred HHHhHHHH-hhhhhhHHHHHHHHHHHHHHHhcCCCCCCcccchhcccccCCCCCcEEEEEecCCCCchHHHHHHHhcCcc
Q 044777 162 ATREQRFE-RVTKNLKVARVFTTLVEEMKAMGLAPNDDSQCTEVMAPVALGDRSPVLLFMGGGMGAGKSTVLKDILKEPF 240 (513)
Q Consensus 162 a~r~~rf~-r~~~~~~v~r~~~~~ve~~~~~~~~~~~~~~~~~vl~p~~~~~~~P~LILmaG~pGAGKSTla~~Ll~~~f 240 (513)
.+++.-.+ +......+...+.+.+.++-. + ..+ |.......|.++++.|||||||||++..|+..
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~----~-~~~-------~~~~~~~~~~vi~lvGpnGsGKTTt~~kLA~~-- 137 (318)
T PRK10416 72 ELRERVKRKNLKDPEELKELLKEELAEILE----P-VEK-------PLNIEEKKPFVILVVGVNGVGKTTTIGKLAHK-- 137 (318)
T ss_pred HHHHHHhccCCCCHHHHHHHHHHHHHHHhC----c-CCc-------cccccCCCCeEEEEECCCCCcHHHHHHHHHHH--
Confidence 88875322 233344556666655533221 0 000 11122356899999999999999999999874
Q ss_pred cccCCCCeEEeccccccc
Q 044777 241 WAGAAGNAVVIEADAFKE 258 (513)
Q Consensus 241 ~~~~~~~aVvInaDefR~ 258 (513)
....+..+.++++|.+|.
T Consensus 138 l~~~g~~V~Li~~D~~r~ 155 (318)
T PRK10416 138 YKAQGKKVLLAAGDTFRA 155 (318)
T ss_pred HHhcCCeEEEEecCccch
Confidence 333455777889999873
No 12
>COG0645 Predicted kinase [General function prediction only]
Probab=99.23 E-value=5.7e-11 Score=112.56 Aligned_cols=122 Identities=17% Similarity=0.150 Sum_probs=89.3
Q ss_pred cEEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEecccccccchhhhhhhhc---cccCchhhHHHHHhHhHHHHHHH
Q 044777 215 PVLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADAFKESDVIYRALSS---RSHVDMLQTAELVHQSSTDAASS 291 (513)
Q Consensus 215 P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDefR~~~p~y~~l~~---~G~~Dp~qaae~v~~eAtrlA~~ 291 (513)
+.+++++|.||+||||+++.+.+. .++++|.+|++|+.+..- .... .|.|++. ........+..
T Consensus 1 ~~l~l~~Gl~GsGKstlA~~l~~~-------lgA~~lrsD~irk~L~g~-p~~~r~~~g~ys~~-----~~~~vy~~l~~ 67 (170)
T COG0645 1 GRLVLVGGLPGSGKSTLARGLAEL-------LGAIRLRSDVIRKRLFGV-PEETRGPAGLYSPA-----ATAAVYDELLG 67 (170)
T ss_pred CeEEEEecCCCccHhHHHHHHHhh-------cCceEEehHHHHHHhcCC-cccccCCCCCCcHH-----HHHHHHHHHHH
Confidence 468999999999999999999987 789999999999876431 1111 1223221 11112244555
Q ss_pred HHHHHHHCCCcEEEECcCCChHHHHHHHHHHhhhhhcccccccccccccCCccccchhhhhhhhhhhhcccCCCCeEEEE
Q 044777 292 LLVTALNEGRDVIMDGTLSWVPFVVQTITMARNVHRHRYRMGVGYKKAEDGTVIENYWDRIGEREQAQDGKMRKPYRIEL 371 (513)
Q Consensus 292 li~~aL~~GrsVIlDtTlS~~~~~~qii~~Ar~~h~~~y~~g~GYkv~~~g~~~e~Yw~~v~~a~~~~~~~~~~gYrI~L 371 (513)
....++..|.+||+|+||..+..++.....|+. .|-.+.+
T Consensus 68 ~A~l~l~~G~~VVlDa~~~r~~~R~~~~~~A~~----------------------------------------~gv~~~l 107 (170)
T COG0645 68 RAELLLSSGHSVVLDATFDRPQERALARALARD----------------------------------------VGVAFVL 107 (170)
T ss_pred HHHHHHhCCCcEEEecccCCHHHHHHHHHHHhc----------------------------------------cCCceEE
Confidence 678899999999999999999998877766633 3445566
Q ss_pred EEEecChHHHHHHHHHHH
Q 044777 372 VGVVCDAYLAVVRGIRRA 389 (513)
Q Consensus 372 v~V~~dpelAv~Rv~~Rv 389 (513)
+-+.++++....|++.|.
T Consensus 108 i~~~ap~~v~~~rl~aR~ 125 (170)
T COG0645 108 IRLEAPEEVLRGRLAARK 125 (170)
T ss_pred EEcCCcHHHHHHHHHHhC
Confidence 777788998888888873
No 13
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=99.20 E-value=4e-10 Score=108.94 Aligned_cols=143 Identities=18% Similarity=0.206 Sum_probs=92.2
Q ss_pred CcEEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEecccccccchhhhhhhhccccC-chhhHHHHHh----------
Q 044777 214 SPVLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADAFKESDVIYRALSSRSHV-DMLQTAELVH---------- 282 (513)
Q Consensus 214 ~P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDefR~~~p~y~~l~~~G~~-Dp~qaae~v~---------- 282 (513)
.|.+++++|+|||||||+++.|+... +-..++.+|.+|+.+-.+....+. .+ ...++.+.+.
T Consensus 2 ~~~~i~i~G~~G~GKst~a~~l~~~~------~~~~~~~~D~~r~~~r~~~~~~p~-l~~s~~~a~~~~~~~~~~~~~~~ 74 (197)
T PRK12339 2 ESTIHFIGGIPGVGKTSISGYIARHR------AIDIVLSGDYLREFLRPYVDDEPV-LAKSVYDAWEFYGSMTDENIVKG 74 (197)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhc------CCeEEehhHHHHHHHHHhcCCCCC-cccccHHHHHHcCCcchhHHHHH
Confidence 57899999999999999999999871 223578999998754322111100 00 0000011110
Q ss_pred ---H-h-HHHHHHHHHHHHHHCCCcEEEECcCCChHHHHHHHHHHhhhhhcccccccccccccCCccccchhhhhhhhhh
Q 044777 283 ---Q-S-STDAASSLLVTALNEGRDVIMDGTLSWVPFVVQTITMARNVHRHRYRMGVGYKKAEDGTVIENYWDRIGEREQ 357 (513)
Q Consensus 283 ---~-e-AtrlA~~li~~aL~~GrsVIlDtTlS~~~~~~qii~~Ar~~h~~~y~~g~GYkv~~~g~~~e~Yw~~v~~a~~ 357 (513)
+ + .......++..++.+|++||+|+++..+.+++. ++
T Consensus 75 y~~q~~~v~~~L~~va~~~l~~G~sVIvEgv~l~p~~~~~----~~---------------------------------- 116 (197)
T PRK12339 75 YLDQARAIMPGINRVIRRALLNGEDLVIESLYFHPPMIDE----NR---------------------------------- 116 (197)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCEEEEecCcCHHHHHH----HH----------------------------------
Confidence 0 0 012234567889999999999999999887531 10
Q ss_pred hhcccCCCCeEEEEEEEe-cChHHHHHHHHHHHHhcCCcCchhHHHHHHHHHH
Q 044777 358 AQDGKMRKPYRIELVGVV-CDAYLAVVRGIRRAIMCRRAVRVKSQLKSHKRFA 409 (513)
Q Consensus 358 ~~~~~~~~gYrI~Lv~V~-~dpelAv~Rv~~Rv~~gGh~VP~~~il~r~~rf~ 409 (513)
..+ +.++++. .|++....|...|...++++.|.++-.+.++...
T Consensus 117 ------~~~--v~~i~l~v~d~e~lr~Rl~~R~~~~~~~~p~~~~~~~~~~ir 161 (197)
T PRK12339 117 ------TNN--IRAFYLYIRDAELHRSRLADRINYTHKNSPGKRLAEHLPEYR 161 (197)
T ss_pred ------hcC--eEEEEEEeCCHHHHHHHHHHHhhcccCCCcHHHHHHHHHHHH
Confidence 011 2344453 5899999999999999999999976665554433
No 14
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=99.18 E-value=2.1e-10 Score=107.14 Aligned_cols=127 Identities=18% Similarity=0.135 Sum_probs=78.8
Q ss_pred cEEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEecccccccchhhhhhhhcccc-Cch--hhHHHHHhHhHHHHHHH
Q 044777 215 PVLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADAFKESDVIYRALSSRSH-VDM--LQTAELVHQSSTDAASS 291 (513)
Q Consensus 215 P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDefR~~~p~y~~l~~~G~-~Dp--~qaae~v~~eAtrlA~~ 291 (513)
..+|+|.|+|||||||+++.|.+.. ...+++++-|.|+..++........+. .++ ....+-...........
T Consensus 2 ~~~i~l~G~~gsGKst~a~~l~~~~-----~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~ 76 (175)
T cd00227 2 GRIIILNGGSSAGKSSIARALQSVL-----AEPWLHFGVDSFIEALPLKCQDAEGGIEFDGDGGVSPGPEFRLLEGAWYE 76 (175)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhh-----CCCccccCccHHHHhcChhhcccccccccCccCCcccchHHHHHHHHHHH
Confidence 3589999999999999999998861 234577899999766543211000000 000 00011111122333445
Q ss_pred HHHHHHHCCCcEEEECcCCChHHHHHHHHHHhhhhhcccccccccccccCCccccchhhhhhhhhhhhcccCCCCeEEEE
Q 044777 292 LLVTALNEGRDVIMDGTLSWVPFVVQTITMARNVHRHRYRMGVGYKKAEDGTVIENYWDRIGEREQAQDGKMRKPYRIEL 371 (513)
Q Consensus 292 li~~aL~~GrsVIlDtTlS~~~~~~qii~~Ar~~h~~~y~~g~GYkv~~~g~~~e~Yw~~v~~a~~~~~~~~~~gYrI~L 371 (513)
.+..++++|.+||+|+|+..........+.+ .|..+.+
T Consensus 77 ~~~~~l~~G~~VIvD~~~~~~~~~r~~~~~~------------------------------------------~~~~~~~ 114 (175)
T cd00227 77 AVAAMARAGANVIADDVFLGRAALQDCWRSF------------------------------------------VGLDVLW 114 (175)
T ss_pred HHHHHHhCCCcEEEeeeccCCHHHHHHHHHh------------------------------------------cCCCEEE
Confidence 5778899999999999988433322221111 2334677
Q ss_pred EEEecChHHHHHHHHHH
Q 044777 372 VGVVCDAYLAVVRGIRR 388 (513)
Q Consensus 372 v~V~~dpelAv~Rv~~R 388 (513)
+++.||++...+|...|
T Consensus 115 v~l~~~~~~l~~R~~~R 131 (175)
T cd00227 115 VGVRCPGEVAEGRETAR 131 (175)
T ss_pred EEEECCHHHHHHHHHhc
Confidence 88899999999999988
No 15
>COG4639 Predicted kinase [General function prediction only]
Probab=99.15 E-value=3.7e-10 Score=106.14 Aligned_cols=131 Identities=21% Similarity=0.180 Sum_probs=98.5
Q ss_pred CcEEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEecccccccchhhh-hhhhccccCchhhHHHHHhHhHHHHHHHH
Q 044777 214 SPVLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADAFKESDVIY-RALSSRSHVDMLQTAELVHQSSTDAASSL 292 (513)
Q Consensus 214 ~P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDefR~~~p~y-~~l~~~G~~Dp~qaae~v~~eAtrlA~~l 292 (513)
++.|+++.|++||||||+++..... ..+|+.|+||...+.- ...+..+ -.....+.+...
T Consensus 1 ~~~LvvL~G~~~sGKsT~ak~n~~~---------~~~lsld~~r~~lg~~~~~e~sqk----------~~~~~~~~l~~~ 61 (168)
T COG4639 1 MRILVVLRGASGSGKSTFAKENFLQ---------NYVLSLDDLRLLLGVSASKENSQK----------NDELVWDILYKQ 61 (168)
T ss_pred CceEEEEecCCCCchhHHHHHhCCC---------cceecHHHHHHHhhhchhhhhccc----------cHHHHHHHHHHH
Confidence 3679999999999999999976543 3488999998654310 0011100 011234566677
Q ss_pred HHHHHHCCCcEEEECcCCChHHHHHHHHHHhhhhhcccccccccccccCCccccchhhhhhhhhhhhcccCCCCeEEEEE
Q 044777 293 LVTALNEGRDVIMDGTLSWVPFVVQTITMARNVHRHRYRMGVGYKKAEDGTVIENYWDRIGEREQAQDGKMRKPYRIELV 372 (513)
Q Consensus 293 i~~aL~~GrsVIlDtTlS~~~~~~qii~~Ar~~h~~~y~~g~GYkv~~~g~~~e~Yw~~v~~a~~~~~~~~~~gYrI~Lv 372 (513)
++..|.+|...|+|+|...++.+++++.+|.+ -||.+..+
T Consensus 62 l~qrl~~Gk~tiidAtn~rr~~r~~l~~La~~----------------------------------------y~~~~~~i 101 (168)
T COG4639 62 LEQRLRRGKFTIIDATNLRREDRRKLIDLAKA----------------------------------------YGYKIYAI 101 (168)
T ss_pred HHHHHHcCCeEEEEcccCCHHHHHHHHHHHHH----------------------------------------hCCeEEEE
Confidence 88999999999999999999999999998855 34556777
Q ss_pred EEecChHHHHHHHHHHHHhcCCcCchhHHHHHHHH
Q 044777 373 GVVCDAYLAVVRGIRRAIMCRRAVRVKSQLKSHKR 407 (513)
Q Consensus 373 ~V~~dpelAv~Rv~~Rv~~gGh~VP~~~il~r~~r 407 (513)
.+..|++++.+|...| -|-||++.|.+.++.
T Consensus 102 vfdtp~~~c~aRNk~~----~Rqv~~~VI~r~~r~ 132 (168)
T COG4639 102 VFDTPLELCLARNKLR----ERQVPEEVIPRMLRE 132 (168)
T ss_pred EEeCCHHHHHHHhhcc----chhCCHHHHHHHHHH
Confidence 7789999999998744 677999999877766
No 16
>PRK12337 2-phosphoglycerate kinase; Provisional
Probab=99.11 E-value=3.7e-09 Score=114.07 Aligned_cols=206 Identities=14% Similarity=0.179 Sum_probs=121.6
Q ss_pred HHHHHhhcCCCchhhhhHHHHHHHHHhH---HHHhhhhhhHHHHHHHHHHHHHHHhcCCCCCCcccchhcccccCCCCCc
Q 044777 139 LMISQVLNSDAEPKKKLKHIVMQATREQ---RFERVTKNLKVARVFTTLVEEMKAMGLAPNDDSQCTEVMAPVALGDRSP 215 (513)
Q Consensus 139 ~li~~~l~~~~~~~~~~~~~v~~a~r~~---rf~r~~~~~~v~r~~~~~ve~~~~~~~~~~~~~~~~~vl~p~~~~~~~P 215 (513)
.||.++++++.+ ..|++.+++. .-.++.....|+..+..++.+... + +....-+...+... ..+|
T Consensus 188 sLi~aDV~~~~A------~~Ia~~Lk~~L~~kg~~~~~ra~VR~~V~~~L~~~l~----~-~~a~~y~la~~i~~-~k~p 255 (475)
T PRK12337 188 SLMAAGLAPDVA------RRLARETERDLRRSGDRVVRRDQLRRKVEALLLEEAG----E-EVARRYRLLRSIRR-PPRP 255 (475)
T ss_pred HHHHcCCCHHHH------HHHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhhh----h-hHHHHHHHHHHhhc-cCCC
Confidence 778889998887 7777777653 123333444555555444432111 0 00000122222222 2469
Q ss_pred EEEEEecCCCCchHHHHHHHhcCcccccCCCCeE-Eecccccccch---------hh--------hhhhhcccc--C-ch
Q 044777 216 VLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAV-VIEADAFKESD---------VI--------YRALSSRSH--V-DM 274 (513)
Q Consensus 216 ~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aV-vInaDefR~~~---------p~--------y~~l~~~G~--~-Dp 274 (513)
.+|+|+|+||+||||++..|+.. .++. +|++|.+|+.+ |. |..+...+. . .|
T Consensus 256 ~vil~~G~~G~GKSt~a~~LA~~-------lg~~~ii~tD~iR~~lr~~i~~e~~P~Lh~Sty~A~~~~~~~~~~~~~~~ 328 (475)
T PRK12337 256 LHVLIGGVSGVGKSVLASALAYR-------LGITRIVSTDAVREVLRAMVSKDLLPTLHASTFNAWRALLPPGEGLPAEP 328 (475)
T ss_pred eEEEEECCCCCCHHHHHHHHHHH-------cCCcEEeehhHHHHHHHhhcchhhccchhhchhhHHhhccCccccccccc
Confidence 99999999999999999999987 3443 78999998632 11 111101000 0 00
Q ss_pred hh---HHHHHhHhHH---HHHHHHHHHHHHCCCcEEEECcCCChHHHHHHHHHHhhhhhcccccccccccccCCccccch
Q 044777 275 LQ---TAELVHQSST---DAASSLLVTALNEGRDVIMDGTLSWVPFVVQTITMARNVHRHRYRMGVGYKKAEDGTVIENY 348 (513)
Q Consensus 275 ~q---aae~v~~eAt---rlA~~li~~aL~~GrsVIlDtTlS~~~~~~qii~~Ar~~h~~~y~~g~GYkv~~~g~~~e~Y 348 (513)
.. ...+ ...+. .-.+.+++.++.+|.|||+|++.-.|.++....
T Consensus 329 ~~~~vi~Gf-~~q~~~V~~gi~~vI~r~l~eG~SvIIEGVHl~P~~i~~~~----------------------------- 378 (475)
T PRK12337 329 TRAEVLRGF-RDQVQQVAVGLGAIQERSAQEGTSLVLEGVHLVPGYLRHPY----------------------------- 378 (475)
T ss_pred chHHHHHHH-HHHHHHHHHHHHHHHHHHHHcCCeEEEECCCCCHHHHHHHH-----------------------------
Confidence 00 0011 01111 235678899999999999999999998865110
Q ss_pred hhhhhhhhhhhcccCCCCeEEEEEEEecChHHHHHHHHHHHHhcCCcCchhHHHHHHHH
Q 044777 349 WDRIGEREQAQDGKMRKPYRIELVGVVCDAYLAVVRGIRRAIMCRRAVRVKSQLKSHKR 407 (513)
Q Consensus 349 w~~v~~a~~~~~~~~~~gYrI~Lv~V~~dpelAv~Rv~~Rv~~gGh~VP~~~il~r~~r 407 (513)
+..+--|.++.+..|++.-..|...|...++..-|.++-.+.++.
T Consensus 379 --------------~~~~~~i~flv~isdeeeH~~Rf~~Ra~~~~~~r~~~ky~~~f~~ 423 (475)
T PRK12337 379 --------------QAGALVVPMLVTLPDEALHRRRFELRDRETGASRPRERYLRHFEE 423 (475)
T ss_pred --------------hcCCceEEEEEEECCHHHHHHHHHHHhhhccCCCchhHHHHhHHH
Confidence 111122333333468999999999999988887787766654433
No 17
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=99.10 E-value=2.1e-09 Score=99.97 Aligned_cols=159 Identities=14% Similarity=0.179 Sum_probs=93.1
Q ss_pred EEEEecCCCCchHHHHHHHhcCcccccCCCCeEEecc-cccccchhhhhhhhccccCchhhHHHHHh---HhHHHHHHHH
Q 044777 217 LLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEA-DAFKESDVIYRALSSRSHVDMLQTAELVH---QSSTDAASSL 292 (513)
Q Consensus 217 LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvIna-DefR~~~p~y~~l~~~G~~Dp~qaae~v~---~eAtrlA~~l 292 (513)
+|+|.|+|||||||+++.|++. .++++|+. |.+|+........ |. ...++.. .....++..+
T Consensus 1 ~i~i~G~pGsGKst~a~~la~~-------~~~~~is~~d~lr~~~~~~~~~---~~----~~~~~~~~g~~~~~~~~~~l 66 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVEN-------FGFTHLSAGDLLRAEIKSGSEN---GE----LIESMIKNGKIVPSEVTVKL 66 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHHH-------cCCeEEECChHHHHHHhcCChH---HH----HHHHHHHCCCcCCHHHHHHH
Confidence 5799999999999999999987 47889997 5666442210000 00 0000100 0001233345
Q ss_pred HHHHHHC--CCcEEEECcCCChHHHHHHHHHHhhhhhcccccccccccccCCccccchhhhhhhhhhhhcccCCCCeEEE
Q 044777 293 LVTALNE--GRDVIMDGTLSWVPFVVQTITMARNVHRHRYRMGVGYKKAEDGTVIENYWDRIGEREQAQDGKMRKPYRIE 370 (513)
Q Consensus 293 i~~aL~~--GrsVIlDtTlS~~~~~~qii~~Ar~~h~~~y~~g~GYkv~~~g~~~e~Yw~~v~~a~~~~~~~~~~gYrI~ 370 (513)
+..++.+ +..||+|+...+......+.+.+. ...... .
T Consensus 67 l~~~~~~~~~~~~vlDg~p~~~~q~~~~~~~~~---------------------------------------~~~~~d-~ 106 (183)
T TIGR01359 67 LKNAIQADGSKKFLIDGFPRNEENLEAWEKLMD---------------------------------------NKVNFK-F 106 (183)
T ss_pred HHHHHhccCCCcEEEeCCCCCHHHHHHHHHHHh---------------------------------------cCCCCC-E
Confidence 5555543 678999999988766554433220 001111 2
Q ss_pred EEEEecChHHHHHHHHHHHHhcCCcC-chhHHHHHHHHHHHHHHH---hhcccceEEEEecCC
Q 044777 371 LVGVVCDAYLAVVRGIRRAIMCRRAV-RVKSQLKSHKRFANAFLT---YCQLVDSARLYSTNA 429 (513)
Q Consensus 371 Lv~V~~dpelAv~Rv~~Rv~~gGh~V-P~~~il~r~~rf~~nf~~---~~~lvD~a~lyDNs~ 429 (513)
++++.+|++...+|...|....||.- ..+.+.+++..+.++... +..--+.+..+|++.
T Consensus 107 ~i~l~~~~~~~~~Rl~~R~~~~~r~dd~~e~~~~r~~~y~~~~~~i~~~~~~~~~~~~Id~~~ 169 (183)
T TIGR01359 107 VLFFDCPEEVMIKRLLKRGQSSGRVDDNIESIKKRFRTYNEQTLPVIEHYENKGKVKEINAEG 169 (183)
T ss_pred EEEEECCHHHHHHHHhcCCccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEECCC
Confidence 56778999999999999865545543 355666666666655332 223335667777664
No 18
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=99.01 E-value=2.4e-09 Score=98.45 Aligned_cols=115 Identities=13% Similarity=0.028 Sum_probs=76.1
Q ss_pred EEEEecCCCCchHHHHHHHhcCcccccCCCCeEEecccccccchhhhhhhhccccCchhhHHHHHhHhHHHHHHHHHHHH
Q 044777 217 LLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADAFKESDVIYRALSSRSHVDMLQTAELVHQSSTDAASSLLVTA 296 (513)
Q Consensus 217 LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDefR~~~p~y~~l~~~G~~Dp~qaae~v~~eAtrlA~~li~~a 296 (513)
+++|.|+|||||||+++.|... +...+.++++++.|.++..+... . .+++.. . .+..+.+.......
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~~--l~~~g~~~~~i~~d~~r~~l~~~--~----~~~~~~---~--~~~~~~~~~~a~~l 67 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEEK--LFQRGRPVYVLDGDNVRHGLNKD--L----GFSRED---R--EENIRRIAEVAKLL 67 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHHH--HHHcCCCEEEEcCHHHHHhhhhc--c----CCCcch---H--HHHHHHHHHHHHHH
Confidence 4789999999999999999886 22224467889999998643210 0 111111 0 11122233345566
Q ss_pred HHCCCcEEEECcCCChHHHHHHHHHHhhhhhcccccccccccccCCccccchhhhhhhhhhhhcccCCCCeEEEEEEEec
Q 044777 297 LNEGRDVIMDGTLSWVPFVVQTITMARNVHRHRYRMGVGYKKAEDGTVIENYWDRIGEREQAQDGKMRKPYRIELVGVVC 376 (513)
Q Consensus 297 L~~GrsVIlDtTlS~~~~~~qii~~Ar~~h~~~y~~g~GYkv~~~g~~~e~Yw~~v~~a~~~~~~~~~~gYrI~Lv~V~~ 376 (513)
+++|.+||+|.|+.++..+..+.+++ + ++.+.++++.+
T Consensus 68 ~~~G~~VIid~~~~~~~~R~~~~~l~----------------------------------------~--~~~~~~i~l~~ 105 (149)
T cd02027 68 ADAGLIVIAAFISPYREDREAARKII----------------------------------------G--GGDFLEVFVDT 105 (149)
T ss_pred HhCCCEEEEccCCCCHHHHHHHHHhc----------------------------------------C--CCCEEEEEEeC
Confidence 78999999999998877765443322 1 45677889999
Q ss_pred ChHHHHHHHH
Q 044777 377 DAYLAVVRGI 386 (513)
Q Consensus 377 dpelAv~Rv~ 386 (513)
|++...+|..
T Consensus 106 ~~e~~~~R~~ 115 (149)
T cd02027 106 PLEVCEQRDP 115 (149)
T ss_pred CHHHHHHhCc
Confidence 9998888754
No 19
>PRK14527 adenylate kinase; Provisional
Probab=98.99 E-value=3.1e-09 Score=100.65 Aligned_cols=150 Identities=13% Similarity=0.088 Sum_probs=92.1
Q ss_pred CCcEEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEeccccc-ccchhhhhhhhccccCchhhHHHHHh---HhHHHH
Q 044777 213 RSPVLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADAF-KESDVIYRALSSRSHVDMLQTAELVH---QSSTDA 288 (513)
Q Consensus 213 ~~P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDef-R~~~p~y~~l~~~G~~Dp~qaae~v~---~eAtrl 288 (513)
.+|.+|+|.|+|||||||+++.|++. .++.+++.|++ +........+.. ...++.. .....+
T Consensus 4 ~~~~~i~i~G~pGsGKsT~a~~La~~-------~~~~~is~gd~~r~~~~~~~~~~~-------~~~~~~~~g~~~p~~~ 69 (191)
T PRK14527 4 TKNKVVIFLGPPGAGKGTQAERLAQE-------LGLKKLSTGDILRDHVARGTELGQ-------RAKPIMEAGDLVPDEL 69 (191)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHH-------hCCCCCCccHHHHHHHhcCcHHHH-------HHHHHHHcCCCCcHHH
Confidence 46889999999999999999999887 46778888655 432211000000 0000000 000123
Q ss_pred HHHHHHHHHHC--CCcEEEECcCCChHHHHHHHHHHhhhhhcccccccccccccCCccccchhhhhhhhhhhhcccCCCC
Q 044777 289 ASSLLVTALNE--GRDVIMDGTLSWVPFVVQTITMARNVHRHRYRMGVGYKKAEDGTVIENYWDRIGEREQAQDGKMRKP 366 (513)
Q Consensus 289 A~~li~~aL~~--GrsVIlDtTlS~~~~~~qii~~Ar~~h~~~y~~g~GYkv~~~g~~~e~Yw~~v~~a~~~~~~~~~~g 366 (513)
...++...+.+ +..+|+|+..++...++.+..+++ ..|
T Consensus 70 ~~~l~~~~l~~~~~~~~VlDGfpr~~~q~~~~~~~~~----------------------------------------~~g 109 (191)
T PRK14527 70 ILALIRDELAGMEPVRVIFDGFPRTLAQAEALDRLLE----------------------------------------ELG 109 (191)
T ss_pred HHHHHHHHHhcCCCCcEEEcCCCCCHHHHHHHHHHHH----------------------------------------HcC
Confidence 34445555544 457999998777666544433331 123
Q ss_pred eEEE-EEEEecChHHHHHHHHHHHHhcCC-cCchhHHHHHHHHHHHHHHHhh
Q 044777 367 YRIE-LVGVVCDAYLAVVRGIRRAIMCRR-AVRVKSQLKSHKRFANAFLTYC 416 (513)
Q Consensus 367 YrI~-Lv~V~~dpelAv~Rv~~Rv~~gGh-~VP~~~il~r~~rf~~nf~~~~ 416 (513)
..+. ++++.+|++....|...|....|| +...+.+.+|+..|.++.....
T Consensus 110 ~~~~~vi~l~~~~~~~~~Rl~~R~~~~~r~dd~~~~~~~R~~~y~~~~~~v~ 161 (191)
T PRK14527 110 ARLLAVVLLEVPDEELIRRIVERARQEGRSDDNEETVRRRQQVYREQTQPLV 161 (191)
T ss_pred CCCCEEEEEECCHHHHHHHHHcCcccCCCCCCCHHHHHHHHHHHHHHhHHHH
Confidence 3333 466789999999999999766555 4456777888877777655433
No 20
>PRK06761 hypothetical protein; Provisional
Probab=98.96 E-value=4.8e-09 Score=106.99 Aligned_cols=40 Identities=5% Similarity=-0.011 Sum_probs=37.8
Q ss_pred CCcCchhHHHHHHHHHHHHHHHhhcccceEEEEecCCCCC
Q 044777 393 RRAVRVKSQLKSHKRFANAFLTYCQLVDSARLYSTNALEG 432 (513)
Q Consensus 393 Gh~VP~~~il~r~~rf~~nf~~~~~lvD~a~lyDNs~~~~ 432 (513)
||.+|.+.+++||.+...+|.++..+.|.+.+||||....
T Consensus 112 ~h~~p~e~i~~R~~~rw~~f~~a~l~~dq~~ifE~s~~~~ 151 (282)
T PRK06761 112 IYELPFDKNTELITDRWNDFAEIALEENKVYIFECCFIQN 151 (282)
T ss_pred eecCCHHHHHHHHHHHHHHHHHHhhccCceEEEeccCcCC
Confidence 8999999999999999999999999999999999998854
No 21
>PRK14531 adenylate kinase; Provisional
Probab=98.95 E-value=9.9e-09 Score=96.86 Aligned_cols=140 Identities=16% Similarity=0.125 Sum_probs=84.8
Q ss_pred cEEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEecc-cccccchhhhhhh-------hccccCchhhHHHHHhHhHH
Q 044777 215 PVLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEA-DAFKESDVIYRAL-------SSRSHVDMLQTAELVHQSST 286 (513)
Q Consensus 215 P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvIna-DefR~~~p~y~~l-------~~~G~~Dp~qaae~v~~eAt 286 (513)
+.-|++.|+|||||||+++.|++. .++.+|+. |.+|+.......+ ...|.. +..
T Consensus 2 ~~~i~i~G~pGsGKsT~~~~la~~-------~g~~~is~gd~lr~~~~~~~~~~~~~~~~~~~G~~--------v~d--- 63 (183)
T PRK14531 2 KQRLLFLGPPGAGKGTQAARLCAA-------HGLRHLSTGDLLRSEVAAGSALGQEAEAVMNRGEL--------VSD--- 63 (183)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH-------hCCCeEecccHHHHHHhcCCHHHHHHHHHHHcCCC--------CCH---
Confidence 345888999999999999999987 47788988 6666543211000 011111 111
Q ss_pred HHHHHHHHHHHH--CCCcEEEECcCCChHHHHHHHHHHhhhhhcccccccccccccCCccccchhhhhhhhhhhhcccCC
Q 044777 287 DAASSLLVTALN--EGRDVIMDGTLSWVPFVVQTITMARNVHRHRYRMGVGYKKAEDGTVIENYWDRIGEREQAQDGKMR 364 (513)
Q Consensus 287 rlA~~li~~aL~--~GrsVIlDtTlS~~~~~~qii~~Ar~~h~~~y~~g~GYkv~~~g~~~e~Yw~~v~~a~~~~~~~~~ 364 (513)
.+...++...+. .+..+|+|+..++......+.+.+..
T Consensus 64 ~l~~~~~~~~l~~~~~~g~ilDGfpr~~~q~~~~~~~~~~---------------------------------------- 103 (183)
T PRK14531 64 ALVLAIVESQLKALNSGGWLLDGFPRTVAQAEALEPLLEE---------------------------------------- 103 (183)
T ss_pred HHHHHHHHHHHhhccCCcEEEeCCCCCHHHHHHHHHHHHH----------------------------------------
Confidence 122223333332 35679999999997665544332211
Q ss_pred CCeEEE-EEEEecChHHHHHHHHHHHHhcCC-cCchhHHHHHHHHHHHHHHHhh
Q 044777 365 KPYRIE-LVGVVCDAYLAVVRGIRRAIMCRR-AVRVKSQLKSHKRFANAFLTYC 416 (513)
Q Consensus 365 ~gYrI~-Lv~V~~dpelAv~Rv~~Rv~~gGh-~VP~~~il~r~~rf~~nf~~~~ 416 (513)
.+..+. ++++.||+++.++|...| |+ +...+.+.+|+..+..+....+
T Consensus 104 ~~~~~~~vi~l~~~~~~l~~Rl~~R----~r~dD~~e~i~~Rl~~y~~~~~pv~ 153 (183)
T PRK14531 104 LKQPIEAVVLLELDDAVLIERLLAR----GRADDNEAVIRNRLEVYREKTAPLI 153 (183)
T ss_pred cCCCCCeEEEEECCHHHHHHHhhcC----CCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 111122 466789999999999988 44 4456677777777766555443
No 22
>PRK14532 adenylate kinase; Provisional
Probab=98.94 E-value=1.3e-08 Score=95.68 Aligned_cols=137 Identities=18% Similarity=0.184 Sum_probs=82.6
Q ss_pred EEEecCCCCchHHHHHHHhcCcccccCCCCeEEecc-cccccchhh----h---hhhhccccCchhhHHHHHhHhHHHHH
Q 044777 218 LFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEA-DAFKESDVI----Y---RALSSRSHVDMLQTAELVHQSSTDAA 289 (513)
Q Consensus 218 ILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvIna-DefR~~~p~----y---~~l~~~G~~Dp~qaae~v~~eAtrlA 289 (513)
|+|.|+|||||||+++.|++. .++++|++ |.+|+.... . ......|.. +.. .+.
T Consensus 3 i~~~G~pGsGKsT~a~~la~~-------~g~~~is~~d~lr~~~~~~~~~~~~~~~~~~~g~~--------~~~---~~~ 64 (188)
T PRK14532 3 LILFGPPAAGKGTQAKRLVEE-------RGMVQLSTGDMLRAAIASGSELGQRVKGIMDRGEL--------VSD---EIV 64 (188)
T ss_pred EEEECCCCCCHHHHHHHHHHH-------cCCeEEeCcHHHHHHHHcCCHHHHHHHHHHHCCCc--------cCH---HHH
Confidence 788999999999999999987 57889998 555653310 0 000111211 111 122
Q ss_pred HHHHHHHH---HCCCcEEEECcCCChHHHHHHHHHHhhhhhcccccccccccccCCccccchhhhhhhhhhhhcccCCCC
Q 044777 290 SSLLVTAL---NEGRDVIMDGTLSWVPFVVQTITMARNVHRHRYRMGVGYKKAEDGTVIENYWDRIGEREQAQDGKMRKP 366 (513)
Q Consensus 290 ~~li~~aL---~~GrsVIlDtTlS~~~~~~qii~~Ar~~h~~~y~~g~GYkv~~~g~~~e~Yw~~v~~a~~~~~~~~~~g 366 (513)
..++...+ ..|..||+|++.++....+.+.+++. ..|
T Consensus 65 ~~~~~~~~~~~~~~~g~vldg~pr~~~q~~~~~~~l~----------------------------------------~~g 104 (188)
T PRK14532 65 IALIEERLPEAEAAGGAIFDGFPRTVAQAEALDKMLA----------------------------------------SRG 104 (188)
T ss_pred HHHHHHHHhCcCccCcEEEeCCCCCHHHHHHHHHHHH----------------------------------------hcC
Confidence 23333333 34678999999998777665544332 122
Q ss_pred eEE-EEEEEecChHHHHHHHHHHHHhcCCcCc-hhHHHHHHHHHHHHH
Q 044777 367 YRI-ELVGVVCDAYLAVVRGIRRAIMCRRAVR-VKSQLKSHKRFANAF 412 (513)
Q Consensus 367 YrI-~Lv~V~~dpelAv~Rv~~Rv~~gGh~VP-~~~il~r~~rf~~nf 412 (513)
..+ .++++.+|++.++.|...|....+|.-. .+.+.++...+..+.
T Consensus 105 ~~pd~vi~L~v~~~~~~~Rl~~R~~~~~r~dd~~~~~~~Rl~~~~~~~ 152 (188)
T PRK14532 105 QKIDVVIRLKVDDEALIERIVKRFEEQGRPDDNPEVFVTRLDAYNAQT 152 (188)
T ss_pred CCCCEEEEEECCHHHHHHHHHcCcCcCCCCCCCHHHHHHHHHHHHHHH
Confidence 233 3566789999999999988654455433 334455555554443
No 23
>PLN02200 adenylate kinase family protein
Probab=98.93 E-value=1.5e-08 Score=100.25 Aligned_cols=161 Identities=15% Similarity=0.147 Sum_probs=93.1
Q ss_pred cccccCCCCCcEEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEecc-cccccchhh----hhhhh---ccccCchhh
Q 044777 205 MAPVALGDRSPVLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEA-DAFKESDVI----YRALS---SRSHVDMLQ 276 (513)
Q Consensus 205 l~p~~~~~~~P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvIna-DefR~~~p~----y~~l~---~~G~~Dp~q 276 (513)
+.|..+....|.+|+|.|+|||||||+++.|++. .++.+|+. |.+|+.... +..+. ..|..
T Consensus 33 ~~~~~~~~~~~~ii~I~G~PGSGKsT~a~~La~~-------~g~~his~gdllR~~i~~~s~~~~~i~~~~~~G~~---- 101 (234)
T PLN02200 33 ERGSSSKEKTPFITFVLGGPGSGKGTQCEKIVET-------FGFKHLSAGDLLRREIASNSEHGAMILNTIKEGKI---- 101 (234)
T ss_pred cccCCccCCCCEEEEEECCCCCCHHHHHHHHHHH-------hCCeEEEccHHHHHHHhccChhHHHHHHHHHcCCC----
Confidence 4455555667899999999999999999999987 46778877 566643211 00000 00110
Q ss_pred HHHHHhHhHHHHHHHHHHHHHH--CCCcEEEECcCCChHHHHHHHHHHhhhhhcccccccccccccCCccccchhhhhhh
Q 044777 277 TAELVHQSSTDAASSLLVTALN--EGRDVIMDGTLSWVPFVVQTITMARNVHRHRYRMGVGYKKAEDGTVIENYWDRIGE 354 (513)
Q Consensus 277 aae~v~~eAtrlA~~li~~aL~--~GrsVIlDtTlS~~~~~~qii~~Ar~~h~~~y~~g~GYkv~~~g~~~e~Yw~~v~~ 354 (513)
+.. .+...++...+. .+..+|+|+..++......+.+.+
T Consensus 102 ----vp~---e~~~~~l~~~l~~~~~~~~ILDG~Prt~~q~~~l~~~~-------------------------------- 142 (234)
T PLN02200 102 ----VPS---EVTVKLIQKEMESSDNNKFLIDGFPRTEENRIAFERII-------------------------------- 142 (234)
T ss_pred ----CcH---HHHHHHHHHHHhcCCCCeEEecCCcccHHHHHHHHHHh--------------------------------
Confidence 110 222223333333 345799999988765543332211
Q ss_pred hhhhhcccCCCCeEE-EEEEEecChHHHHHHHHHHHHhcCCcC-chhHHHHHHHHHHHHHHHhhccc---ceEEEEecC
Q 044777 355 REQAQDGKMRKPYRI-ELVGVVCDAYLAVVRGIRRAIMCRRAV-RVKSQLKSHKRFANAFLTYCQLV---DSARLYSTN 428 (513)
Q Consensus 355 a~~~~~~~~~~gYrI-~Lv~V~~dpelAv~Rv~~Rv~~gGh~V-P~~~il~r~~rf~~nf~~~~~lv---D~a~lyDNs 428 (513)
+... .++++.+++++.+.|...|.. +|.. ..+.+.++...|..+...+...- +.++.+|++
T Consensus 143 -----------~~~pd~vi~Ld~~~e~~~~Rl~~R~~--~r~dd~~e~~~~Rl~~y~~~~~pv~~~y~~~~~~~~IDa~ 208 (234)
T PLN02200 143 -----------GAEPNVVLFFDCPEEEMVKRVLNRNQ--GRVDDNIDTIKKRLKVFNALNLPVIDYYSKKGKLYTINAV 208 (234)
T ss_pred -----------ccCCCEEEEEECCHHHHHHHHHcCcC--CCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEECC
Confidence 0011 346677999999999988842 4433 34666677777766654433322 335555544
No 24
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=98.91 E-value=1.4e-08 Score=95.35 Aligned_cols=95 Identities=14% Similarity=0.100 Sum_probs=62.7
Q ss_pred CCcEEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEecccccccchhhhhhhhccccCchhhHHHHHhHhHHHHHHHH
Q 044777 213 RSPVLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADAFKESDVIYRALSSRSHVDMLQTAELVHQSSTDAASSL 292 (513)
Q Consensus 213 ~~P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDefR~~~p~y~~l~~~G~~Dp~qaae~v~~eAtrlA~~l 292 (513)
.+|.+++|.|+|||||||+++.|... +...+.+++++++|.+++.+. ....+.+. +.. ...+.+..+
T Consensus 16 ~~~~~i~i~G~~GsGKstla~~l~~~--l~~~~~~~~~l~~d~~r~~l~------~~~~~~~~---~~~--~~~~~~~~~ 82 (184)
T TIGR00455 16 HRGVVIWLTGLSGSGKSTIANALEKK--LESKGYRVYVLDGDNVRHGLN------KDLGFSEE---DRK--ENIRRIGEV 82 (184)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH--HHHcCCcEEEECChHHHhhhc------cccCCCHH---HHH--HHHHHHHHH
Confidence 57899999999999999999999876 322334678999999985431 10111110 110 111222334
Q ss_pred HHHHHHCCCcEEEECcCCChHHHHHHHH
Q 044777 293 LVTALNEGRDVIMDGTLSWVPFVVQTIT 320 (513)
Q Consensus 293 i~~aL~~GrsVIlDtTlS~~~~~~qii~ 320 (513)
....+.+|.+||+|+|+....++..+..
T Consensus 83 ~~~~~~~G~~VI~d~~~~~~~~r~~~~~ 110 (184)
T TIGR00455 83 AKLFVRNGIIVITSFISPYRADRQMVRE 110 (184)
T ss_pred HHHHHcCCCEEEEecCCCCHHHHHHHHH
Confidence 5667899999999999988777654433
No 25
>PF07931 CPT: Chloramphenicol phosphotransferase-like protein; InterPro: IPR012853 The members of this family are all similar to chloramphenicol 3-O phosphotransferase (CPT, Q56148 from SWISSPROT) expressed by Streptomyces venezuelae. Chloramphenicol (Cm) is a metabolite produced by this bacterium that can inhibit ribosomal peptidyl transferase activity and therefore protein production. By transferring a phosphate group to the C-3 hydroxyl group of Cm, CPT inactivates this potentially lethal metabolite [, ]. ; GO: 0005524 ATP binding, 0016740 transferase activity; PDB: 1QHX_A 1QHN_A 1GRR_A 1QHY_A 1QHS_A 1GRQ_A.
Probab=98.90 E-value=1.2e-08 Score=97.25 Aligned_cols=126 Identities=14% Similarity=0.193 Sum_probs=75.7
Q ss_pred EEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEecccccccchhhhhhhhccccCchh---hHHHHHhHhHHHHHHHH
Q 044777 216 VLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADAFKESDVIYRALSSRSHVDML---QTAELVHQSSTDAASSL 292 (513)
Q Consensus 216 ~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDefR~~~p~y~~l~~~G~~Dp~---qaae~v~~eAtrlA~~l 292 (513)
.+|++-|++-|||||+++.|... . ...++++.-|.|+..+|.-......|. ++. ...+..-......+..-
T Consensus 2 ~iI~LNG~sSSGKSsia~~Lq~~--~---~~p~~~l~~D~f~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~ 75 (174)
T PF07931_consen 2 QIIILNGPSSSGKSSIARALQER--L---PEPWLHLSVDTFVDMMPPGRYRPGDGL-EPAGDRPDGGPLFRRLYAAMHAA 75 (174)
T ss_dssp -EEEEEE-TTSSHHHHHHHHHHH--S---SS-EEEEEHHHHHHHS-GGGGTSTTSE-EEETTSEEE-HHHHHHHHHHHHH
T ss_pred eEEEEeCCCCCCHHHHHHHHHHh--C---cCCeEEEecChHHhhcCcccccCCccc-cccccCCchhHHHHHHHHHHHHH
Confidence 58999999999999999999886 1 357789999999886653221111111 100 00000111112333444
Q ss_pred HHHHHHCCCcEEEECcCCChHHHHHHHHHHhhhhhcccccccccccccCCccccchhhhhhhhhhhhcccCCCCeEEEEE
Q 044777 293 LVTALNEGRDVIMDGTLSWVPFVVQTITMARNVHRHRYRMGVGYKKAEDGTVIENYWDRIGEREQAQDGKMRKPYRIELV 372 (513)
Q Consensus 293 i~~aL~~GrsVIlDtTlS~~~~~~qii~~Ar~~h~~~y~~g~GYkv~~~g~~~e~Yw~~v~~a~~~~~~~~~~gYrI~Lv 372 (513)
+....+.|.+||+|..+.++.+.....+. .-.||.|.+|
T Consensus 76 iaa~a~aG~~VIvD~v~~~~~~l~d~l~~-----------------------------------------~L~~~~vl~V 114 (174)
T PF07931_consen 76 IAAMARAGNNVIVDDVFLGPRWLQDCLRR-----------------------------------------LLAGLPVLFV 114 (174)
T ss_dssp HHHHHHTT-EEEEEE--TTTHHHHHHHHH-----------------------------------------HHTTS-EEEE
T ss_pred HHHHHhCCCCEEEecCccCcHHHHHHHHH-----------------------------------------HhCCCceEEE
Confidence 66778899999999999998774332210 1157889999
Q ss_pred EEecChHHHHHHHHHH
Q 044777 373 GVVCDAYLAVVRGIRR 388 (513)
Q Consensus 373 ~V~~dpelAv~Rv~~R 388 (513)
+|.||+++..+|-+.|
T Consensus 115 gV~Cpleil~~RE~~R 130 (174)
T PF07931_consen 115 GVRCPLEILERRERAR 130 (174)
T ss_dssp EEE--HHHHHHHHHHH
T ss_pred EEECCHHHHHHHHHhc
Confidence 9999999998988888
No 26
>PRK05541 adenylylsulfate kinase; Provisional
Probab=98.84 E-value=2.2e-08 Score=93.32 Aligned_cols=85 Identities=18% Similarity=0.215 Sum_probs=54.9
Q ss_pred CCCcEEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEecccccccchhhhhhhhccccCchhhHHHHHhHhHHHHHHH
Q 044777 212 DRSPVLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADAFKESDVIYRALSSRSHVDMLQTAELVHQSSTDAASS 291 (513)
Q Consensus 212 ~~~P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDefR~~~p~y~~l~~~G~~Dp~qaae~v~~eAtrlA~~ 291 (513)
..+|.+|++.|+|||||||+++.+... ....+.+.++++.|.+++.++.+ | +++.... +.......
T Consensus 4 ~~~~~~I~i~G~~GsGKst~a~~l~~~--l~~~~~~~~~~~~d~~r~~~~~~------~-~~~~~~~-----~~~~~~~~ 69 (176)
T PRK05541 4 KPNGYVIWITGLAGSGKTTIAKALYER--LKLKYSNVIYLDGDELREILGHY------G-YDKQSRI-----EMALKRAK 69 (176)
T ss_pred CCCCCEEEEEcCCCCCHHHHHHHHHHH--HHHcCCcEEEEecHHHHhhcCCC------C-CCHHHHH-----HHHHHHHH
Confidence 357889999999999999999999875 22234567899999998755432 1 2111101 11112222
Q ss_pred HHHHHHHCCCcEEEECcCC
Q 044777 292 LLVTALNEGRDVIMDGTLS 310 (513)
Q Consensus 292 li~~aL~~GrsVIlDtTlS 310 (513)
+.+....+|..||+|++..
T Consensus 70 l~~~l~~~g~~VI~~~~~~ 88 (176)
T PRK05541 70 LAKFLADQGMIVIVTTISM 88 (176)
T ss_pred HHHHHHhCCCEEEEEeCCc
Confidence 3333457899999998763
No 27
>PRK04220 2-phosphoglycerate kinase; Provisional
Probab=98.82 E-value=3.7e-07 Score=94.07 Aligned_cols=98 Identities=23% Similarity=0.354 Sum_probs=63.8
Q ss_pred CcEEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEecccccccch---------h-----hhhhhhcc-ccCchh--h
Q 044777 214 SPVLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADAFKESD---------V-----IYRALSSR-SHVDML--Q 276 (513)
Q Consensus 214 ~P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDefR~~~---------p-----~y~~l~~~-G~~Dp~--q 276 (513)
.|.+++++|++||||||++..|+.. + +...+|++|.+|+.+ | .|..+... ....+. .
T Consensus 91 ~p~iIlI~G~sgsGKStlA~~La~~--l----~~~~vi~~D~~re~~R~~~~~e~~p~L~~S~Y~a~~~l~~~~~~~~~~ 164 (301)
T PRK04220 91 EPIIILIGGASGVGTSTIAFELASR--L----GIRSVIGTDSIREVMRKIISKELLPTLHESSYTAWKSLRRPPPPEPPV 164 (301)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH--h----CCCEEEechHHHHHHHHhcchhhccchhhhhhhhhhcccCCCCCchhh
Confidence 6899999999999999999999987 1 222578999998422 1 22222210 000010 0
Q ss_pred HHHHHhHh-H-HHHHHHHHHHHHHCCCcEEEECcCCChHHHHH
Q 044777 277 TAELVHQS-S-TDAASSLLVTALNEGRDVIMDGTLSWVPFVVQ 317 (513)
Q Consensus 277 aae~v~~e-A-trlA~~li~~aL~~GrsVIlDtTlS~~~~~~q 317 (513)
...+..+. . ...+...+..++++|.++|+||..-.|.|.+.
T Consensus 165 l~g~~~~~~~v~~gi~~~I~~~~~~g~s~IiEGvhl~P~~i~~ 207 (301)
T PRK04220 165 IYGFERHVEPVSVGVEAVIERALKEGISVIIEGVHIVPGFIKE 207 (301)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhCCcEEEecCCCCHHHHHH
Confidence 11121111 1 12356678999999999999999999988653
No 28
>PRK06696 uridine kinase; Validated
Probab=98.82 E-value=1.7e-08 Score=98.32 Aligned_cols=43 Identities=19% Similarity=0.318 Sum_probs=34.5
Q ss_pred CCcEEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEecccccc
Q 044777 213 RSPVLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADAFK 257 (513)
Q Consensus 213 ~~P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDefR 257 (513)
..|.+|.|+|++||||||+++.|... ....+..++++..|.|.
T Consensus 20 ~~~~iI~I~G~sgsGKSTlA~~L~~~--l~~~g~~v~~~~~Ddf~ 62 (223)
T PRK06696 20 TRPLRVAIDGITASGKTTFADELAEE--IKKRGRPVIRASIDDFH 62 (223)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHH--HHHcCCeEEEecccccc
Confidence 47999999999999999999999886 32223456778889884
No 29
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=98.81 E-value=3.5e-08 Score=105.86 Aligned_cols=123 Identities=11% Similarity=0.222 Sum_probs=81.0
Q ss_pred hhhhhcCCCCcchHHHHHHHHHHHHhhhhhhhccchhhHHHHHhhcCCCchhhhhHHHHHHHHHhH-HHHhhhhhhHH-H
Q 044777 101 IYTFFSSEPAADSLFIKLVEEFERCILSYFAFHWSHADLMISQVLNSDAEPKKKLKHIVMQATREQ-RFERVTKNLKV-A 178 (513)
Q Consensus 101 i~~~~~~~~~~~~l~~~~~eele~~~~~~~~~~~~~~~~li~~~l~~~~~~~~~~~~~v~~a~r~~-rf~r~~~~~~v-~ 178 (513)
+..+.++...+|.-..++++|+++ .||.++.+.+.. ..+++.+++. ..+.+.+...- .
T Consensus 13 ~~~l~~~~~l~e~~i~~~l~ei~~--------------aLleaDV~~~vv------~~~~~~v~~~~~~~~~~~~~~~~~ 72 (429)
T TIGR01425 13 LRSMSNATVIDEEVLNAMLKEICT--------------ALLESDVNIKLV------RQLRENIKKAINLEEMASGLNKRK 72 (429)
T ss_pred HHHHhCCCccCHHHHHHHHHHHHH--------------HHHHCCCCHHHH------HHHHHHHHHHHhccccccccCHHH
Confidence 344445677778888899999999 888888887666 6666666664 23444333321 1
Q ss_pred HHHHHHHHHHHHhcCCCCCCcccchhccc----ccCCCCCcEEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEeccc
Q 044777 179 RVFTTLVEEMKAMGLAPNDDSQCTEVMAP----VALGDRSPVLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEAD 254 (513)
Q Consensus 179 r~~~~~ve~~~~~~~~~~~~~~~~~vl~p----~~~~~~~P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaD 254 (513)
.+...+.+|+.+ +|.| .......|.+|+|+|++||||||++..|+.. +...+..+.+|++|
T Consensus 73 ~v~~~v~~~L~~-------------~l~~~~~~~~~~~~~~~vi~lvG~~GvGKTTtaaKLA~~--l~~~G~kV~lV~~D 137 (429)
T TIGR01425 73 MIQHAVFKELCN-------------LVDPGVEAFTPKKGKQNVIMFVGLQGSGKTTTCTKLAYY--YQRKGFKPCLVCAD 137 (429)
T ss_pred HHHHHHHHHHHH-------------HhCCCCccccccCCCCeEEEEECCCCCCHHHHHHHHHHH--HHHCCCCEEEEcCc
Confidence 222333333333 2222 2222356899999999999999999999864 33445577899999
Q ss_pred cccc
Q 044777 255 AFKE 258 (513)
Q Consensus 255 efR~ 258 (513)
.+|.
T Consensus 138 ~~R~ 141 (429)
T TIGR01425 138 TFRA 141 (429)
T ss_pred ccch
Confidence 9983
No 30
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=98.80 E-value=7.5e-08 Score=85.53 Aligned_cols=125 Identities=14% Similarity=0.122 Sum_probs=79.2
Q ss_pred EEEEecCCCCchHHHHHHHhcCcccccCCCCeEEecccccccchhhhhhhhccccCchhhHHHHHhHhHHHHHHHHHHHH
Q 044777 217 LLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADAFKESDVIYRALSSRSHVDMLQTAELVHQSSTDAASSLLVTA 296 (513)
Q Consensus 217 LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDefR~~~p~y~~l~~~G~~Dp~qaae~v~~eAtrlA~~li~~a 296 (513)
+|+|+|+|||||||+++.|++. .+..+++.|.+.... +...... . +. ..............
T Consensus 1 ~I~i~G~~GsGKst~a~~la~~-------~~~~~~~~~~i~~e~--~~~~~~~---~----~~--~~~i~~~l~~~~~~- 61 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAKK-------LGLPYLDTGGIRTEE--VGKLASE---V----AA--IPEVRKALDERQRE- 61 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHHH-------hCCceeccccCCHHH--HHHHHHH---h----cc--cHhHHHHHHHHHHH-
Confidence 4789999999999999999987 467789999653221 1100100 0 00 00111122223333
Q ss_pred HHCCCcEEEECcCCChHHHHHHHHHHhhhhhcccccccccccccCCccccchhhhhhhhhhhhcccCCCCeEEEEEEEec
Q 044777 297 LNEGRDVIMDGTLSWVPFVVQTITMARNVHRHRYRMGVGYKKAEDGTVIENYWDRIGEREQAQDGKMRKPYRIELVGVVC 376 (513)
Q Consensus 297 L~~GrsVIlDtTlS~~~~~~qii~~Ar~~h~~~y~~g~GYkv~~~g~~~e~Yw~~v~~a~~~~~~~~~~gYrI~Lv~V~~ 376 (513)
+..+.++|+|+...+.-. ... -...+++.+
T Consensus 62 ~~~~~~~Vidg~~~~~~~-------------------------------------~~~-------------~~~~i~l~~ 91 (147)
T cd02020 62 LAKKPGIVLEGRDIGTVV-------------------------------------FPD-------------ADLKIFLTA 91 (147)
T ss_pred HhhCCCEEEEeeeeeeEE-------------------------------------cCC-------------CCEEEEEEC
Confidence 444568999988753100 000 013477889
Q ss_pred ChHHHHHHHHHHHHhcCCcCchhHHHHHHHHHHH
Q 044777 377 DAYLAVVRGIRRAIMCRRAVRVKSQLKSHKRFAN 410 (513)
Q Consensus 377 dpelAv~Rv~~Rv~~gGh~VP~~~il~r~~rf~~ 410 (513)
||++.+.|+..|....+|.++.+..+++++....
T Consensus 92 ~~~~r~~R~~~r~~~~~~~~~~~~~~~~~~~~d~ 125 (147)
T cd02020 92 SPEVRAKRRAKQLQAKGEGVDLEEILAEIIERDE 125 (147)
T ss_pred CHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Confidence 9999999999999777889999988888876644
No 31
>PRK10867 signal recognition particle protein; Provisional
Probab=98.79 E-value=2.5e-08 Score=107.18 Aligned_cols=124 Identities=16% Similarity=0.253 Sum_probs=78.0
Q ss_pred hhhhhcCCCCcchHHHHHHHHHHHHhhhhhhhccchhhHHHHHhhcCCCchhhhhHHHHHHHHHhH-HHHhhhhhh----
Q 044777 101 IYTFFSSEPAADSLFIKLVEEFERCILSYFAFHWSHADLMISQVLNSDAEPKKKLKHIVMQATREQ-RFERVTKNL---- 175 (513)
Q Consensus 101 i~~~~~~~~~~~~l~~~~~eele~~~~~~~~~~~~~~~~li~~~l~~~~~~~~~~~~~v~~a~r~~-rf~r~~~~~---- 175 (513)
+..+.++...++.-..+.++|+++ .||.++.+.+.. ..+++.+++. .-+.+.+.+
T Consensus 13 ~~~l~~~~~~~e~~i~~~l~ei~~--------------~Ll~aDV~~~~~------~~~~~~v~~~~~~~~~~~~~~~~~ 72 (433)
T PRK10867 13 FKKLRGKGRLTEADIKEALREVRL--------------ALLEADVNLPVV------KDFIARVKEKAVGQEVLKSLTPGQ 72 (433)
T ss_pred HHHHhCCCCCCHHHHHHHHHHHHH--------------HHHHCCCCHHHH------HHHHHHHHHHHhhccccccCCcHH
Confidence 344445555555555688999999 999999987776 6777777764 223333322
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCCcccchhcccccCCCCCcEEEEEecCCCCchHHHHHHHhcCcccccC-CCCeEEeccc
Q 044777 176 KVARVFTTLVEEMKAMGLAPNDDSQCTEVMAPVALGDRSPVLLFMGGGMGAGKSTVLKDILKEPFWAGA-AGNAVVIEAD 254 (513)
Q Consensus 176 ~v~r~~~~~ve~~~~~~~~~~~~~~~~~vl~p~~~~~~~P~LILmaG~pGAGKSTla~~Ll~~~f~~~~-~~~aVvInaD 254 (513)
.+...+.+ |+..+--. .. .|.......|.+++++|++||||||++..|+.. +... +..+.+|++|
T Consensus 73 ~~~~~v~~---el~~~l~~--~~-------~~~~~~~~~p~vI~~vG~~GsGKTTtaakLA~~--l~~~~G~kV~lV~~D 138 (433)
T PRK10867 73 QVIKIVND---ELVEILGG--EN-------SELNLAAKPPTVIMMVGLQGAGKTTTAGKLAKY--LKKKKKKKVLLVAAD 138 (433)
T ss_pred HHHHHHHH---HHHHHhCC--Cc-------ceeeecCCCCEEEEEECCCCCcHHHHHHHHHHH--HHHhcCCcEEEEEcc
Confidence 23333333 33222100 00 111122356999999999999999998888764 3333 4577899999
Q ss_pred cccc
Q 044777 255 AFKE 258 (513)
Q Consensus 255 efR~ 258 (513)
.+|.
T Consensus 139 ~~R~ 142 (433)
T PRK10867 139 VYRP 142 (433)
T ss_pred ccch
Confidence 9985
No 32
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=98.78 E-value=6.4e-08 Score=98.07 Aligned_cols=135 Identities=19% Similarity=0.198 Sum_probs=81.8
Q ss_pred EEEEecCCCCchHHHHHHHhcCcccccCCCCeEEeccccccc-chhhhhhhhccccCchhhHHHHHhHhHHHHHHHHHHH
Q 044777 217 LLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADAFKE-SDVIYRALSSRSHVDMLQTAELVHQSSTDAASSLLVT 295 (513)
Q Consensus 217 LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDefR~-~~p~y~~l~~~G~~Dp~qaae~v~~eAtrlA~~li~~ 295 (513)
||+|+|.|||||||+++.|.+. +.+.+..+++|+.|.+.- ... |. |+.. + ..+.......++.
T Consensus 3 Liil~G~P~SGKTt~a~~L~~~--~~~~~~~v~~i~~~~~~~~~~~-y~--------~~~~--E---k~~R~~l~s~v~r 66 (270)
T PF08433_consen 3 LIILCGLPCSGKTTRAKELKKY--LEEKGKEVVIISDDSLGIDRND-YA--------DSKK--E---KEARGSLKSAVER 66 (270)
T ss_dssp EEEEE--TTSSHHHHHHHHHHH--HHHTT--EEEE-THHHH-TTSS-S----------GGG--H---HHHHHHHHHHHHH
T ss_pred EEEEEcCCCCcHHHHHHHHHHH--HHhcCCEEEEEcccccccchhh-hh--------chhh--h---HHHHHHHHHHHHH
Confidence 7899999999999999999885 444456777888877741 111 21 1111 1 1122344556778
Q ss_pred HHHCCCcEEEECcCCChHHHHHHHHHHhhhhhcccccccccccccCCccccchhhhhhhhhhhhcccCCCCeEEEEEEEe
Q 044777 296 ALNEGRDVIMDGTLSWVPFVVQTITMARNVHRHRYRMGVGYKKAEDGTVIENYWDRIGEREQAQDGKMRKPYRIELVGVV 375 (513)
Q Consensus 296 aL~~GrsVIlDtTlS~~~~~~qii~~Ar~~h~~~y~~g~GYkv~~~g~~~e~Yw~~v~~a~~~~~~~~~~gYrI~Lv~V~ 375 (513)
++....=||+|+++--++++-++..+||+. +...-.++|.
T Consensus 67 ~ls~~~iVI~Dd~nYiKg~RYelyclAr~~----------------------------------------~~~~c~i~~~ 106 (270)
T PF08433_consen 67 ALSKDTIVILDDNNYIKGMRYELYCLARAY----------------------------------------GTTFCVIYCD 106 (270)
T ss_dssp HHTT-SEEEE-S---SHHHHHHHHHHHHHT----------------------------------------T-EEEEEEEE
T ss_pred hhccCeEEEEeCCchHHHHHHHHHHHHHHc----------------------------------------CCCEEEEEEC
Confidence 888999999999999999998888877652 3344568899
Q ss_pred cChHHHHHHHHHHHHhcCCcCchhHHHHHHHHHH
Q 044777 376 CDAYLAVVRGIRRAIMCRRAVRVKSQLKSHKRFA 409 (513)
Q Consensus 376 ~dpelAv~Rv~~Rv~~gGh~VP~~~il~r~~rf~ 409 (513)
|+.+.+++|-..|-. ...+|.+.+.+-..||-
T Consensus 107 ~~~e~~~~~N~~R~~--~~~~~~e~i~~m~~RfE 138 (270)
T PF08433_consen 107 CPLETCLQRNSKRPE--PERYPEETIDDMIQRFE 138 (270)
T ss_dssp --HHHHHHHHHHTT---S--S-HHHHHHHHHH--
T ss_pred CCHHHHHHhhhccCC--CCCCCHHHHHHHHHHhc
Confidence 999999999988832 22388888876666654
No 33
>PRK00279 adk adenylate kinase; Reviewed
Probab=98.75 E-value=1e-07 Score=92.00 Aligned_cols=146 Identities=15% Similarity=0.127 Sum_probs=84.4
Q ss_pred EEEecCCCCchHHHHHHHhcCcccccCCCCeEEeccc-ccccchhhhhhhhccccCchhhHHHHHhH---hHHHHHHHHH
Q 044777 218 LFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEAD-AFKESDVIYRALSSRSHVDMLQTAELVHQ---SSTDAASSLL 293 (513)
Q Consensus 218 ILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaD-efR~~~p~y~~l~~~G~~Dp~qaae~v~~---eAtrlA~~li 293 (513)
|+|.|+|||||||+++.|++. .++.+|+.+ .+|+....- .+.|. +..++... -...+...++
T Consensus 3 I~v~G~pGsGKsT~a~~la~~-------~~~~~is~~dl~r~~~~~~---~~~~~----~~~~~~~~g~~~p~~~~~~~i 68 (215)
T PRK00279 3 LILLGPPGAGKGTQAKFIAEK-------YGIPHISTGDMLRAAVKAG---TELGK----EAKSYMDAGELVPDEIVIGLV 68 (215)
T ss_pred EEEECCCCCCHHHHHHHHHHH-------hCCcEEECCccHHHHHhcc---chHHH----HHHHHHHcCCcCCHHHHHHHH
Confidence 788999999999999999987 478899875 445322110 00000 00011100 0012333444
Q ss_pred HHHHHC---CCcEEEECcCCChHHHHHHHHHHhhhhhcccccccccccccCCccccchhhhhhhhhhhhcccCCCCeEE-
Q 044777 294 VTALNE---GRDVIMDGTLSWVPFVVQTITMARNVHRHRYRMGVGYKKAEDGTVIENYWDRIGEREQAQDGKMRKPYRI- 369 (513)
Q Consensus 294 ~~aL~~---GrsVIlDtTlS~~~~~~qii~~Ar~~h~~~y~~g~GYkv~~~g~~~e~Yw~~v~~a~~~~~~~~~~gYrI- 369 (513)
...+.+ +..+|+|+..++......+.+.+. ..|..+
T Consensus 69 ~~~l~~~~~~~g~VlDGfPr~~~qa~~l~~~l~----------------------------------------~~~~~~~ 108 (215)
T PRK00279 69 KERLAQPDCKNGFLLDGFPRTIPQAEALDEMLK----------------------------------------ELGIKLD 108 (215)
T ss_pred HHHHhccCccCCEEEecCCCCHHHHHHHHHHHH----------------------------------------HcCCCCC
Confidence 444433 347999998777655443433221 112222
Q ss_pred EEEEEecChHHHHHHHHHHHH----------------------------hcCCcCchhHHHHHHHHHHHHHHHhhc
Q 044777 370 ELVGVVCDAYLAVVRGIRRAI----------------------------MCRRAVRVKSQLKSHKRFANAFLTYCQ 417 (513)
Q Consensus 370 ~Lv~V~~dpelAv~Rv~~Rv~----------------------------~gGh~VP~~~il~r~~rf~~nf~~~~~ 417 (513)
.++.+.|+.+..+.|...|.. .++-+.-++.+.+|+..|..+.....+
T Consensus 109 ~vi~l~~~~~~~~~Rl~~R~~~~~~g~~~~~~~~~p~~~~~~~~~~~~l~~r~dd~~~~i~~Rl~~y~~~~~~i~~ 184 (215)
T PRK00279 109 AVIEIDVPDEELVERLSGRRICPACGRTYHVKFNPPKVEGKCDVCGEELIQRADDNEETVRKRLEVYHKQTAPLID 184 (215)
T ss_pred EEEEEECCHHHHHHHHhCCcccCccCCcccccCCCCCCcCcCcCCCCcccCCCCCCHHHHHHHHHHHHHhhHHHHH
Confidence 356678999999999999863 122233466778888888776555444
No 34
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=98.74 E-value=8.3e-08 Score=97.15 Aligned_cols=159 Identities=12% Similarity=0.195 Sum_probs=89.9
Q ss_pred HHHHHHHHHHHhhhhhhhccchhhHHHHHhhcCCCchhhhhHHHHHHHHHhH-HHHhhhhhhHHHHHHHHHHHHHHHhcC
Q 044777 115 FIKLVEEFERCILSYFAFHWSHADLMISQVLNSDAEPKKKLKHIVMQATREQ-RFERVTKNLKVARVFTTLVEEMKAMGL 193 (513)
Q Consensus 115 ~~~~~eele~~~~~~~~~~~~~~~~li~~~l~~~~~~~~~~~~~v~~a~r~~-rf~r~~~~~~v~r~~~~~ve~~~~~~~ 193 (513)
..++++||+. .|+.++.+.+.. ..+++.+++. ...+..+...+.+.+.+.+.++...
T Consensus 3 ~~~~~~~l~~--------------~L~~~dv~~~~~------~~i~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~~-- 60 (272)
T TIGR00064 3 DEDFFEELEE--------------ILLESDVGYEVV------EKIIEALKKELKGKKVKDAELLKEILKEYLKEILKE-- 60 (272)
T ss_pred cHHHHHHHHH--------------HHHHCCCCHHHH------HHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHcc--
Confidence 4567799999 888888887766 7777777764 2222333334445555544322110
Q ss_pred CCCCCcccchhcccccCCCCCcEEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEeccccccc----chhhhhhhhcc
Q 044777 194 APNDDSQCTEVMAPVALGDRSPVLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADAFKE----SDVIYRALSSR 269 (513)
Q Consensus 194 ~~~~~~~~~~vl~p~~~~~~~P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDefR~----~~p~y~~l~~~ 269 (513)
+-.+.......|.++++.|+||+||||++..|+.. +...+..+.+|++|.+|. ++..|......
T Consensus 61 ----------~~~~~~~~~~~~~vi~l~G~~G~GKTTt~akLA~~--l~~~g~~V~li~~D~~r~~a~~ql~~~~~~~~i 128 (272)
T TIGR00064 61 ----------TDLELIVEENKPNVILFVGVNGVGKTTTIAKLANK--LKKQGKSVLLAAGDTFRAAAIEQLEEWAKRLGV 128 (272)
T ss_pred ----------cchhhcccCCCCeEEEEECCCCCcHHHHHHHHHHH--HHhcCCEEEEEeCCCCCHHHHHHHHHHHHhCCe
Confidence 00111122356889999999999999999999864 334455678899999874 22222211110
Q ss_pred ccCchhhHHHHHhHhHHHHHHHHHHHHHHCCCc-EEEECcCCCh
Q 044777 270 SHVDMLQTAELVHQSSTDAASSLLVTALNEGRD-VIMDGTLSWV 312 (513)
Q Consensus 270 G~~Dp~qaae~v~~eAtrlA~~li~~aL~~Grs-VIlDtTlS~~ 312 (513)
..... .. .......+...+..+..++++ |++||.-..+
T Consensus 129 ~~~~~----~~-~~dp~~~~~~~l~~~~~~~~D~ViIDT~G~~~ 167 (272)
T TIGR00064 129 DVIKQ----KE-GADPAAVAFDAIQKAKARNIDVVLIDTAGRLQ 167 (272)
T ss_pred EEEeC----CC-CCCHHHHHHHHHHHHHHCCCCEEEEeCCCCCc
Confidence 00000 00 000112223334566678887 8888876554
No 35
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=98.74 E-value=1.7e-07 Score=86.92 Aligned_cols=139 Identities=18% Similarity=0.183 Sum_probs=76.8
Q ss_pred EEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEecccc-cccchhhh----hh---hhccccCchhhHHHHHhHhHHH
Q 044777 216 VLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADA-FKESDVIY----RA---LSSRSHVDMLQTAELVHQSSTD 287 (513)
Q Consensus 216 ~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDe-fR~~~p~y----~~---l~~~G~~Dp~qaae~v~~eAtr 287 (513)
.++++.|+|||||||+++.|++. .+..++++++ +++..+.. .. ....|...|. .....
T Consensus 4 ~ii~i~G~~GsGKsTl~~~l~~~-------~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~ 69 (188)
T TIGR01360 4 KIIFIVGGPGSGKGTQCEKIVEK-------YGFTHLSTGDLLRAEVASGSERGKQLQAIMESGDLVPL-------DTVLD 69 (188)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH-------hCCcEEeHHHHHHHHHhcCCHHHHHHHHHHHCCCCCCH-------HHHHH
Confidence 36788999999999999999986 3667888855 44432110 00 0000111010 00112
Q ss_pred HHHHHHHHHHHCCCcEEEECcCCChHHHHHHHHHHhhhhhcccccccccccccCCccccchhhhhhhhhhhhcccCCCCe
Q 044777 288 AASSLLVTALNEGRDVIMDGTLSWVPFVVQTITMARNVHRHRYRMGVGYKKAEDGTVIENYWDRIGEREQAQDGKMRKPY 367 (513)
Q Consensus 288 lA~~li~~aL~~GrsVIlDtTlS~~~~~~qii~~Ar~~h~~~y~~g~GYkv~~~g~~~e~Yw~~v~~a~~~~~~~~~~gY 367 (513)
.....+..++..|..||+|+...+......+.. . .+.
T Consensus 70 ~l~~~~~~~~~~~~~~i~dg~~~~~~q~~~~~~---~----------------------------------------~~~ 106 (188)
T TIGR01360 70 LLKDAMVAALGTSKGFLIDGYPREVKQGEEFER---R----------------------------------------IGP 106 (188)
T ss_pred HHHHHHHcccCcCCeEEEeCCCCCHHHHHHHHH---c----------------------------------------CCC
Confidence 222233344667889999998766322221110 0 000
Q ss_pred EEEEEEEecChHHHHHHHHHHHHhcCCcCc-hhHHHHHHHHHHHH
Q 044777 368 RIELVGVVCDAYLAVVRGIRRAIMCRRAVR-VKSQLKSHKRFANA 411 (513)
Q Consensus 368 rI~Lv~V~~dpelAv~Rv~~Rv~~gGh~VP-~~~il~r~~rf~~n 411 (513)
--.++++.+|++..++|...|-...+|... .+.+.++...+..+
T Consensus 107 ~~~vi~l~~~~~~~~~Rl~~R~~~~~r~d~~~~~~~~r~~~~~~~ 151 (188)
T TIGR01360 107 PTLVLYFDCSEDTMVKRLLKRAETSGRVDDNEKTIKKRLETYYKA 151 (188)
T ss_pred CCEEEEEECCHHHHHHHHHcccccCCCCCCCHHHHHHHHHHHHHh
Confidence 123566789999999999988654454333 34455555554443
No 36
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=98.73 E-value=9.1e-08 Score=94.14 Aligned_cols=132 Identities=22% Similarity=0.242 Sum_probs=93.7
Q ss_pred EEEEecCCCCchHHHHHHHhcCcccccCCCCeEEeccccccc-----chhhhhhhhccccCchhhHHHHHhHhHH-HHHH
Q 044777 217 LLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADAFKE-----SDVIYRALSSRSHVDMLQTAELVHQSST-DAAS 290 (513)
Q Consensus 217 LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDefR~-----~~p~y~~l~~~G~~Dp~qaae~v~~eAt-rlA~ 290 (513)
|+++.|+|||||||+++.|++. ..+.....+++..|..+. .+|++++ +..++- +-+.
T Consensus 3 LiIlTGyPgsGKTtfakeLak~--L~~~i~~vi~l~kdy~~~i~~DEslpi~ke---------------~yres~~ks~~ 65 (261)
T COG4088 3 LIILTGYPGSGKTTFAKELAKE--LRQEIWRVIHLEKDYLRGILWDESLPILKE---------------VYRESFLKSVE 65 (261)
T ss_pred eEEEecCCCCCchHHHHHHHHH--HHHhhhhccccchhhhhheecccccchHHH---------------HHHHHHHHHHH
Confidence 7889999999999999999875 233334556677765542 2333221 111221 2334
Q ss_pred HHHHHHHHCCCcEEEECcCCChHHHHHHHHHHhhhhhcccccccccccccCCccccchhhhhhhhhhhhcccCCCCeEEE
Q 044777 291 SLLVTALNEGRDVIMDGTLSWVPFVVQTITMARNVHRHRYRMGVGYKKAEDGTVIENYWDRIGEREQAQDGKMRKPYRIE 370 (513)
Q Consensus 291 ~li~~aL~~GrsVIlDtTlS~~~~~~qii~~Ar~~h~~~y~~g~GYkv~~~g~~~e~Yw~~v~~a~~~~~~~~~~gYrI~ 370 (513)
.++..|++ ..-||+|.|.--.+++.|++-.|... ..+| -
T Consensus 66 rlldSalk-n~~VIvDdtNYyksmRrqL~ceak~~--------------------------------------~tt~--c 104 (261)
T COG4088 66 RLLDSALK-NYLVIVDDTNYYKSMRRQLACEAKER--------------------------------------KTTW--C 104 (261)
T ss_pred HHHHHHhc-ceEEEEecccHHHHHHHHHHHHHHhc--------------------------------------CCce--E
Confidence 57778886 77899999998899999888777431 1233 4
Q ss_pred EEEEecChHHHHHHHHHHHHhcCCcCchhHHHHHHHHHHH
Q 044777 371 LVGVVCDAYLAVVRGIRRAIMCRRAVRVKSQLKSHKRFAN 410 (513)
Q Consensus 371 Lv~V~~dpelAv~Rv~~Rv~~gGh~VP~~~il~r~~rf~~ 410 (513)
++++.|++++...|-..| |.++|.+.+.+-|.||-+
T Consensus 105 iIyl~~plDtc~rrN~er----gepip~Evl~qly~RfEe 140 (261)
T COG4088 105 IIYLRTPLDTCLRRNRER----GEPIPEEVLRQLYDRFEE 140 (261)
T ss_pred EEEEccCHHHHHHhhccC----CCCCCHHHHHHHHHhhcC
Confidence 678889999998887655 999999999999988875
No 37
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=98.71 E-value=2e-07 Score=89.81 Aligned_cols=140 Identities=16% Similarity=0.140 Sum_probs=84.1
Q ss_pred EEEecCCCCchHHHHHHHhcCcccccCCCCeEEeccc-ccccchhhh----h---hhhccccCchhhHHHHHhHhHHHHH
Q 044777 218 LFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEAD-AFKESDVIY----R---ALSSRSHVDMLQTAELVHQSSTDAA 289 (513)
Q Consensus 218 ILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaD-efR~~~p~y----~---~l~~~G~~Dp~qaae~v~~eAtrlA 289 (513)
|+|.|+|||||||+++.|++. .++++|+.+ .+|+..... . .....|.. +. ..+.
T Consensus 2 I~i~G~pGsGKsT~a~~La~~-------~g~~~is~gdllr~~~~~~~~~~~~~~~~~~~g~~--------vp---~~~~ 63 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAEK-------YGLPHISTGDLLRAEIKAGTPLGKKAKEYMEKGEL--------VP---DEIV 63 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHH-------cCCCeeehhHHHHHhhccccHHHHHHHHHHhCCCC--------CC---HHHH
Confidence 688999999999999999987 478899885 455422110 0 00001111 11 1233
Q ss_pred HHHHHHHHHC----CCcEEEECcCCChHHHHHHHHHHhhhhhcccccccccccccCCccccchhhhhhhhhhhhcccCCC
Q 044777 290 SSLLVTALNE----GRDVIMDGTLSWVPFVVQTITMARNVHRHRYRMGVGYKKAEDGTVIENYWDRIGEREQAQDGKMRK 365 (513)
Q Consensus 290 ~~li~~aL~~----GrsVIlDtTlS~~~~~~qii~~Ar~~h~~~y~~g~GYkv~~~g~~~e~Yw~~v~~a~~~~~~~~~~ 365 (513)
..++...+.+ +..+|+|+..++....+.+.+.+. ..
T Consensus 64 ~~l~~~~i~~~~~~~~~~ilDGfPrt~~Qa~~l~~~~~----------------------------------------~~ 103 (210)
T TIGR01351 64 NQLVKERLTQNQDNENGFILDGFPRTLSQAEALDALLK----------------------------------------EK 103 (210)
T ss_pred HHHHHHHHhcCcccCCcEEEeCCCCCHHHHHHHHHHhc----------------------------------------cC
Confidence 4455555544 678999997777555443322110 00
Q ss_pred CeEEEEEEEecChHHHHHHHHHHHHh--c-------------------------CC-cCchhHHHHHHHHHHHHHHHhhc
Q 044777 366 PYRIELVGVVCDAYLAVVRGIRRAIM--C-------------------------RR-AVRVKSQLKSHKRFANAFLTYCQ 417 (513)
Q Consensus 366 gYrI~Lv~V~~dpelAv~Rv~~Rv~~--g-------------------------Gh-~VP~~~il~r~~rf~~nf~~~~~ 417 (513)
+ -.++++.+|.++.+.|...|..- + +| +..++.+.+|+..|.++....+.
T Consensus 104 ~--~~vi~L~~~~~~~~~Rl~~R~~~~~~g~~y~~~~~~p~~~~~~~~~~~~l~~R~dD~~e~i~~Rl~~y~~~~~~v~~ 181 (210)
T TIGR01351 104 I--DAVIELDVPDEELVERLSGRRICPSCGRVYHLKFNPPKVPGCDDCTGELLIQREDDTEEVVKKRLEVYKEQTEPLID 181 (210)
T ss_pred C--CEEEEEECCHHHHHHHHHCCCccCCcCCccccccCCCccCCcCcccCCccccCCCCCHHHHHHHHHHHHHhhHHHHH
Confidence 0 13566789999999999998521 1 12 23466778888888877655443
No 38
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=98.71 E-value=7.2e-08 Score=103.51 Aligned_cols=127 Identities=15% Similarity=0.241 Sum_probs=78.5
Q ss_pred hhhhcCCCCcchHHHHHHHHHHHHhhhhhhhccchhhHHHHHhhcCCCchhhhhHHHHHHHHHhHHH-HhhhhhhHH-HH
Q 044777 102 YTFFSSEPAADSLFIKLVEEFERCILSYFAFHWSHADLMISQVLNSDAEPKKKLKHIVMQATREQRF-ERVTKNLKV-AR 179 (513)
Q Consensus 102 ~~~~~~~~~~~~l~~~~~eele~~~~~~~~~~~~~~~~li~~~l~~~~~~~~~~~~~v~~a~r~~rf-~r~~~~~~v-~r 179 (513)
..+.++...++.-..+.++|+++ .||.++.+.+.. ..+++.++++-. +++.+.... +.
T Consensus 13 ~~l~~~~~~~e~~i~~~l~ei~~--------------~Ll~aDV~~~~v------~~~~~~i~~~~~~~~~~~~~~~~~~ 72 (428)
T TIGR00959 13 KKLSGRGTITEKNIKEALREIRL--------------ALLEADVNLQVV------KDFIKKVKEKALGQEVLKSLSPGQQ 72 (428)
T ss_pred HHHhCCCCCCHHHHHHHHHHHHH--------------HHHHCCCCHHHH------HHHHHHHHHHhccccccccCCcHHH
Confidence 33445566777777889999999 888888887666 666677766422 222222221 22
Q ss_pred HHHHHHHHHHHhcCCCCCCcccchhcccccCCCCCcEEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEeccccccc
Q 044777 180 VFTTLVEEMKAMGLAPNDDSQCTEVMAPVALGDRSPVLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADAFKE 258 (513)
Q Consensus 180 ~~~~~ve~~~~~~~~~~~~~~~~~vl~p~~~~~~~P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDefR~ 258 (513)
+...+.+|+..+--.. . .+.......|.+++++|++||||||++..|+.. +....+..+.+|++|.+|.
T Consensus 73 ~~~~v~~eL~~~l~~~------~---~~~~~~~~~p~vi~~vG~~GsGKTTtaakLA~~-l~~~~g~kV~lV~~D~~R~ 141 (428)
T TIGR00959 73 FIKIVHEELVAILGGE------N---ASLNLAKKPPTVILMVGLQGSGKTTTCGKLAYY-LKKKQGKKVLLVACDLYRP 141 (428)
T ss_pred HHHHHHHHHHHHhCCC------C---cccccCCCCCEEEEEECCCCCcHHHHHHHHHHH-HHHhCCCeEEEEeccccch
Confidence 3333333333321000 0 011122356999999999999999998888764 1112356788999999985
No 39
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=98.70 E-value=3.4e-07 Score=85.50 Aligned_cols=146 Identities=15% Similarity=0.123 Sum_probs=84.9
Q ss_pred EEEecCCCCchHHHHHHHhcCcccccCCCCeEEeccccc-ccchhhhhhhhccccCchhhHHHHHhH---hHHHHHHHHH
Q 044777 218 LFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADAF-KESDVIYRALSSRSHVDMLQTAELVHQ---SSTDAASSLL 293 (513)
Q Consensus 218 ILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDef-R~~~p~y~~l~~~G~~Dp~qaae~v~~---eAtrlA~~li 293 (513)
|+|.|+|||||||+++.|++. .++.+|+.|++ ++..+....+.. ........ ....+...++
T Consensus 2 I~i~G~pGsGKst~a~~La~~-------~~~~~i~~~~l~~~~~~~~~~~~~-------~~~~~~~~g~~~~~~~~~~l~ 67 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKK-------YGLPHISTGDLLREEIASGTELGK-------KAKEYIDSGKLVPDEIVIKLL 67 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHH-------cCCeEEECcHHHHHHHhcCChHHH-------HHHHHHHcCCccCHHHHHHHH
Confidence 689999999999999999987 47889998765 432211000000 00000000 0012344555
Q ss_pred HHHHHC---CCcEEEECcCCChHHHHHHHHHHhhhhhcccccccccccccCCccccchhhhhhhhhhhhcccCCCCeEEE
Q 044777 294 VTALNE---GRDVIMDGTLSWVPFVVQTITMARNVHRHRYRMGVGYKKAEDGTVIENYWDRIGEREQAQDGKMRKPYRIE 370 (513)
Q Consensus 294 ~~aL~~---GrsVIlDtTlS~~~~~~qii~~Ar~~h~~~y~~g~GYkv~~~g~~~e~Yw~~v~~a~~~~~~~~~~gYrI~ 370 (513)
...+.+ +..+|+|+...+......+.+.. ...+....
T Consensus 68 ~~~l~~~~~~~~~vldg~Pr~~~q~~~l~~~~----------------------------------------~~~~~~~~ 107 (194)
T cd01428 68 KERLKKPDCKKGFILDGFPRTVDQAEALDELL----------------------------------------DEGIKPDK 107 (194)
T ss_pred HHHHhcccccCCEEEeCCCCCHHHHHHHHHHH----------------------------------------hcCCCCCE
Confidence 666654 67899999877755444332211 00111224
Q ss_pred EEEEecChHHHHHHHHHHHHh--------------------cCCcCchhHHHHHHHHHHHHHHHhhc
Q 044777 371 LVGVVCDAYLAVVRGIRRAIM--------------------CRRAVRVKSQLKSHKRFANAFLTYCQ 417 (513)
Q Consensus 371 Lv~V~~dpelAv~Rv~~Rv~~--------------------gGh~VP~~~il~r~~rf~~nf~~~~~ 417 (513)
++++.+|++..++|...|... .......+.+.+|+..|..+....+.
T Consensus 108 ~i~l~~~~~~~~~Rl~~R~~~~~~~~~~~~~~~~~~~~~l~~r~dd~~~~i~~R~~~y~~~~~~i~~ 174 (194)
T cd01428 108 VIELDVPDEVLIERILGRRICPVSGRVYHLGKDDVTGEPLSQRSDDNEETIKKRLEVYKEQTAPLID 174 (194)
T ss_pred EEEEECCHHHHHHHHHcCCcCCCcCCcCCcCCCcccCCccccCCCCCHHHHHHHHHHHHHhHHHHHH
Confidence 577789999999999998643 12223346777777777776544433
No 40
>PRK03846 adenylylsulfate kinase; Provisional
Probab=98.67 E-value=2.4e-07 Score=88.50 Aligned_cols=95 Identities=13% Similarity=0.076 Sum_probs=58.3
Q ss_pred CCcEEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEecccccccchhhhhhhhccccCchhhHHHHHhHhHHHHHHHH
Q 044777 213 RSPVLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADAFKESDVIYRALSSRSHVDMLQTAELVHQSSTDAASSL 292 (513)
Q Consensus 213 ~~P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDefR~~~p~y~~l~~~G~~Dp~qaae~v~~eAtrlA~~l 292 (513)
.+|.++.|.|+|||||||+++.|.... + ..+.+.++++.|.++...... .+ +.+... .+..+.+..+
T Consensus 22 ~~~~~i~i~G~~GsGKSTla~~l~~~l-~-~~~~~~~~ld~d~~~~~~~~~-----~~-~~~~~~-----~~~~~~l~~~ 88 (198)
T PRK03846 22 HKGVVLWFTGLSGSGKSTVAGALEEAL-H-ELGVSTYLLDGDNVRHGLCSD-----LG-FSDADR-----KENIRRVGEV 88 (198)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH-H-hCCCCEEEEcCEeHHhhhhhc-----CC-cCcccH-----HHHHHHHHHH
Confidence 478999999999999999999998862 2 234568899999997543210 01 111010 1111222234
Q ss_pred HHHHHHCCCcEEEECcCCChHHHHHHHH
Q 044777 293 LVTALNEGRDVIMDGTLSWVPFVVQTIT 320 (513)
Q Consensus 293 i~~aL~~GrsVIlDtTlS~~~~~~qii~ 320 (513)
...++.+|..||.+.....+..++.+.+
T Consensus 89 a~~~~~~G~~VI~~~~~~~~~~R~~~r~ 116 (198)
T PRK03846 89 AKLMVDAGLVVLTAFISPHRAERQMVRE 116 (198)
T ss_pred HHHHhhCCCEEEEEeCCCCHHHHHHHHH
Confidence 5567788988876444334566655544
No 41
>PRK00889 adenylylsulfate kinase; Provisional
Probab=98.66 E-value=2e-07 Score=86.72 Aligned_cols=89 Identities=15% Similarity=0.141 Sum_probs=53.4
Q ss_pred CcEEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEecccccccchhhhhhhhccccCchhhHHHHHhHhHHHHHHHHH
Q 044777 214 SPVLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADAFKESDVIYRALSSRSHVDMLQTAELVHQSSTDAASSLL 293 (513)
Q Consensus 214 ~P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDefR~~~p~y~~l~~~G~~Dp~qaae~v~~eAtrlA~~li 293 (513)
++.+++|.|+|||||||+++.|... ....+.++++|+.|.+++.... .. .+.+..- + ....++ ..+.
T Consensus 3 ~g~~i~~~G~~GsGKST~a~~la~~--l~~~g~~v~~id~D~~~~~~~~-----~~-~~~~~~r-~---~~~~~~-~~~a 69 (175)
T PRK00889 3 RGVTVWFTGLSGAGKTTIARALAEK--LREAGYPVEVLDGDAVRTNLSK-----GL-GFSKEDR-D---TNIRRI-GFVA 69 (175)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH--HHHcCCeEEEEcCccHHHHHhc-----CC-CCChhhH-H---HHHHHH-HHHH
Confidence 5779999999999999999999876 2223446788999999754210 00 0111000 0 011111 1223
Q ss_pred HHHHHCCCcEEEECcCCChHHH
Q 044777 294 VTALNEGRDVIMDGTLSWVPFV 315 (513)
Q Consensus 294 ~~aL~~GrsVIlDtTlS~~~~~ 315 (513)
......|..||++++......+
T Consensus 70 ~~~~~~g~~vi~~~~~~~~~~~ 91 (175)
T PRK00889 70 NLLTRHGVIVLVSAISPYRETR 91 (175)
T ss_pred HHHHhCCCEEEEecCCCCHHHH
Confidence 3445689999999986444333
No 42
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=98.65 E-value=4.2e-07 Score=85.54 Aligned_cols=117 Identities=12% Similarity=0.136 Sum_probs=73.8
Q ss_pred CcEEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEecccccccchhhhhhhhccccCchhhHHHHHhHhHHHHHHHHH
Q 044777 214 SPVLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADAFKESDVIYRALSSRSHVDMLQTAELVHQSSTDAASSLL 293 (513)
Q Consensus 214 ~P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDefR~~~p~y~~l~~~G~~Dp~qaae~v~~eAtrlA~~li 293 (513)
+|.+|.|.|.+||||||+++.|.+. +...+.++++++.|.+|..+ ++.-.++. .+ ..+..+.+..+.
T Consensus 1 ~g~vIwltGlsGsGKtTlA~~L~~~--L~~~g~~~~~LDgD~lR~~l------~~dl~fs~---~d--R~e~~rr~~~~A 67 (156)
T PF01583_consen 1 KGFVIWLTGLSGSGKTTLARALERR--LFARGIKVYLLDGDNLRHGL------NADLGFSK---ED--REENIRRIAEVA 67 (156)
T ss_dssp S-EEEEEESSTTSSHHHHHHHHHHH--HHHTTS-EEEEEHHHHCTTT------TTT--SSH---HH--HHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH--HHHcCCcEEEecCcchhhcc------CCCCCCCH---HH--HHHHHHHHHHHH
Confidence 5889999999999999999999887 33456789999999998643 11001110 01 112223344456
Q ss_pred HHHHHCCCcEEEECcCCChHHHHHHHHHHhhhhhcccccccccccccCCccccchhhhhhhhhhhhcccCCCCeEEEEEE
Q 044777 294 VTALNEGRDVIMDGTLSWVPFVVQTITMARNVHRHRYRMGVGYKKAEDGTVIENYWDRIGEREQAQDGKMRKPYRIELVG 373 (513)
Q Consensus 294 ~~aL~~GrsVIlDtTlS~~~~~~qii~~Ar~~h~~~y~~g~GYkv~~~g~~~e~Yw~~v~~a~~~~~~~~~~gYrI~Lv~ 373 (513)
..+.++|..||+...-..++.++.+-+... .+ +..-||
T Consensus 68 ~ll~~~G~ivIva~isp~~~~R~~~R~~~~-----------------------------------------~~-~f~eVy 105 (156)
T PF01583_consen 68 KLLADQGIIVIVAFISPYREDREWARELIP-----------------------------------------NE-RFIEVY 105 (156)
T ss_dssp HHHHHTTSEEEEE----SHHHHHHHHHHHH-----------------------------------------TT-EEEEEE
T ss_pred HHHHhCCCeEEEeeccCchHHHHHHHHhCC-----------------------------------------cC-ceEEEE
Confidence 677889999999987777766654433221 01 445689
Q ss_pred EecChHHHHHHH
Q 044777 374 VVCDAYLAVVRG 385 (513)
Q Consensus 374 V~~dpelAv~Rv 385 (513)
|.||.+.+.+|-
T Consensus 106 v~~~~e~~~~RD 117 (156)
T PF01583_consen 106 VDCPLEVCRKRD 117 (156)
T ss_dssp EES-HHHHHHHT
T ss_pred eCCCHHHHHHhC
Confidence 999999999983
No 43
>PRK01184 hypothetical protein; Provisional
Probab=98.62 E-value=6e-07 Score=84.07 Aligned_cols=36 Identities=28% Similarity=0.337 Sum_probs=28.0
Q ss_pred EEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEecc-cccccc
Q 044777 216 VLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEA-DAFKES 259 (513)
Q Consensus 216 ~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvIna-DefR~~ 259 (513)
.+|+|.|+|||||||+++ ++++ .++.++++ |.+|+.
T Consensus 2 ~~i~l~G~~GsGKsT~a~-~~~~-------~g~~~i~~~d~lr~~ 38 (184)
T PRK01184 2 KIIGVVGMPGSGKGEFSK-IARE-------MGIPVVVMGDVIREE 38 (184)
T ss_pred cEEEEECCCCCCHHHHHH-HHHH-------cCCcEEEhhHHHHHH
Confidence 478999999999999987 5555 36678886 667654
No 44
>PRK14974 cell division protein FtsY; Provisional
Probab=98.61 E-value=3.7e-07 Score=95.31 Aligned_cols=113 Identities=17% Similarity=0.305 Sum_probs=69.3
Q ss_pred HHHHHHHHHHhhhhhhhccchhhHHHHHhhcCCCchhhhhHHHHHHHHHhH-HHHhhhhhhH----HHHHHHHHHHHHHH
Q 044777 116 IKLVEEFERCILSYFAFHWSHADLMISQVLNSDAEPKKKLKHIVMQATREQ-RFERVTKNLK----VARVFTTLVEEMKA 190 (513)
Q Consensus 116 ~~~~eele~~~~~~~~~~~~~~~~li~~~l~~~~~~~~~~~~~v~~a~r~~-rf~r~~~~~~----v~r~~~~~ve~~~~ 190 (513)
.+.++||+. .|++++.+.+.. ..+++.+++. .-+++..... +...+.+.+.++..
T Consensus 64 ~~~l~~l~~--------------~Ll~~dv~~~~a------~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~ 123 (336)
T PRK14974 64 EDLLEELEL--------------ELLESDVALEVA------EEILESLKEKLVGKKVKRGEDVEEIVKNALKEALLEVLS 123 (336)
T ss_pred HHHHHHHHH--------------HHHHCCCCHHHH------HHHHHHHHHHHhhccCCCccCHHHHHHHHHHHHHHHHhC
Confidence 477899999 899999887777 7777777664 1122222212 34444444422211
Q ss_pred hcCCCCCCcccchhcccccCCCCCcEEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEeccccccc
Q 044777 191 MGLAPNDDSQCTEVMAPVALGDRSPVLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADAFKE 258 (513)
Q Consensus 191 ~~~~~~~~~~~~~vl~p~~~~~~~P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDefR~ 258 (513)
.+ +. .+++.+.. ...+|.++++.|+||+||||++..++.. +...+..+.++++|.+|.
T Consensus 124 ~~------~~-~~~~~~~~-~~~~~~vi~~~G~~GvGKTTtiakLA~~--l~~~g~~V~li~~Dt~R~ 181 (336)
T PRK14974 124 VG------DL-FDLIEEIK-SKGKPVVIVFVGVNGTGKTTTIAKLAYY--LKKNGFSVVIAAGDTFRA 181 (336)
T ss_pred CC------cc-hhhhhhhh-ccCCCeEEEEEcCCCCCHHHHHHHHHHH--HHHcCCeEEEecCCcCcH
Confidence 10 00 11111111 2346999999999999999988888753 333345677899999984
No 45
>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated
Probab=98.60 E-value=4.2e-07 Score=100.80 Aligned_cols=128 Identities=13% Similarity=0.075 Sum_probs=80.8
Q ss_pred HHHHHHHHhcCCCC---CCcccchhcccccCC-CCCcEEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEeccccccc
Q 044777 183 TLVEEMKAMGLAPN---DDSQCTEVMAPVALG-DRSPVLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADAFKE 258 (513)
Q Consensus 183 ~~ve~~~~~~~~~~---~~~~~~~vl~p~~~~-~~~P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDefR~ 258 (513)
|.+.+|..-|..+. ..+++.++|...-++ ..+|.+|+|.|+|||||||+++.|.....+ ..+.++.+++.|.+|+
T Consensus 356 t~ir~~l~~G~~pP~~f~rpeV~~iL~~~~~~r~~~g~~Ivl~Gl~GSGKSTia~~La~~L~~-~~g~~~~~lD~D~vr~ 434 (568)
T PRK05537 356 TELRRRLREGLEIPEWFSFPEVVAELRRTYPPRHKQGFTVFFTGLSGAGKSTIAKALMVKLME-MRGRPVTLLDGDVVRK 434 (568)
T ss_pred HHHHHHHHCCCCCChhhcHHHHHHHHHHHhccccCCCeEEEEECCCCChHHHHHHHHHHHhhh-ccCceEEEeCCcHHHH
Confidence 56666666776655 345555555554444 677999999999999999999999987322 1234578999999975
Q ss_pred chhhhhhhhccccCchhhHHHHHhHhHHHHHHHHHHHHHHCCCcEEEECcCCChHHHHHHHHHH
Q 044777 259 SDVIYRALSSRSHVDMLQTAELVHQSSTDAASSLLVTALNEGRDVIMDGTLSWVPFVVQTITMA 322 (513)
Q Consensus 259 ~~p~y~~l~~~G~~Dp~qaae~v~~eAtrlA~~li~~aL~~GrsVIlDtTlS~~~~~~qii~~A 322 (513)
.+. +.-.+...+ .+ .....+..+....++.|..||+++|+.....+....+++
T Consensus 435 ~l~------ge~~f~~~e-r~----~~~~~l~~~a~~v~~~Gg~vI~~~~~p~~~~R~~nr~ll 487 (568)
T PRK05537 435 HLS------SELGFSKED-RD----LNILRIGFVASEITKNGGIAICAPIAPYRATRREVREMI 487 (568)
T ss_pred hcc------CCCCCCHHH-HH----HHHHHHHHHHHHHHhCCCEEEEEeCCchHHHHHHHHHHH
Confidence 431 100111100 00 011111123456778999999999998877766665544
No 46
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=98.60 E-value=1.3e-07 Score=101.93 Aligned_cols=128 Identities=15% Similarity=0.251 Sum_probs=82.7
Q ss_pred CccchhhhhhcCCCCcchHHHHHHHHHHHHhhhhhhhccchhhHHHHHhhcCCCchhhhhHHHHHHHHHhHHHH-hhhhh
Q 044777 96 GCEDDIYTFFSSEPAADSLFIKLVEEFERCILSYFAFHWSHADLMISQVLNSDAEPKKKLKHIVMQATREQRFE-RVTKN 174 (513)
Q Consensus 96 ~~~~~i~~~~~~~~~~~~l~~~~~eele~~~~~~~~~~~~~~~~li~~~l~~~~~~~~~~~~~v~~a~r~~rf~-r~~~~ 174 (513)
++...+..++++...+|+-..+.++|+++ .|+.++.+.+.. ..+++.+++.=.. .+.+.
T Consensus 4 ~l~~~~~~l~~~~~l~e~~i~~~l~ei~~--------------aLl~adV~~~~~------~~~~~~v~~~~~~~~~~~~ 63 (437)
T PRK00771 4 SLRDALKKLAGKSRIDEKTVKEVVKDIQR--------------ALLQADVNVKLV------KELSKSIKERALEEEPPKG 63 (437)
T ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHH--------------HHHHCCCCHHHH------HHHHHHHHHHHhccccccc
Confidence 34455667777788788878889999999 888888876655 6677777764222 22222
Q ss_pred hHH-HHHHHHHHHHHHHhcCCCCCCcccchhcccccC---CCCCcEEEEEecCCCCchHHHHHHHhcCcccccCCCCeEE
Q 044777 175 LKV-ARVFTTLVEEMKAMGLAPNDDSQCTEVMAPVAL---GDRSPVLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVV 250 (513)
Q Consensus 175 ~~v-~r~~~~~ve~~~~~~~~~~~~~~~~~vl~p~~~---~~~~P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVv 250 (513)
+.. ..+...+.+|+..+ +.+... ....|.+++|+|++|+||||++..|+.. +...+..+.+
T Consensus 64 ~~~~~~~~~~v~~~L~~~-------------l~~~~~~~~~~~~p~vI~lvG~~GsGKTTtaakLA~~--L~~~g~kV~l 128 (437)
T PRK00771 64 LTPREHVIKIVYEELVKL-------------LGEETEPLVLPLKPQTIMLVGLQGSGKTTTAAKLARY--FKKKGLKVGL 128 (437)
T ss_pred CCcHHHHHHHHHHHHHHH-------------hCCCccccccCCCCeEEEEECCCCCcHHHHHHHHHHH--HHHcCCeEEE
Confidence 211 12222233333222 222111 1147999999999999999999999865 4444567788
Q ss_pred eccccccc
Q 044777 251 IEADAFKE 258 (513)
Q Consensus 251 InaDefR~ 258 (513)
|++|.+|.
T Consensus 129 V~~D~~R~ 136 (437)
T PRK00771 129 VAADTYRP 136 (437)
T ss_pred ecCCCCCH
Confidence 99999975
No 47
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=98.59 E-value=8.4e-07 Score=84.12 Aligned_cols=36 Identities=25% Similarity=0.230 Sum_probs=30.4
Q ss_pred cEEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEecccccc
Q 044777 215 PVLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADAFK 257 (513)
Q Consensus 215 P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDefR 257 (513)
..++++.|+|||||||+++.+... .+.++|+.|.+.
T Consensus 3 ge~i~l~G~sGsGKSTl~~~la~~-------l~~~~i~gd~~~ 38 (176)
T PRK09825 3 GESYILMGVSGSGKSLIGSKIAAL-------FSAKFIDGDDLH 38 (176)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHh-------cCCEEECCcccC
Confidence 357899999999999999999886 345789999874
No 48
>PRK07261 topology modulation protein; Provisional
Probab=98.55 E-value=4.2e-07 Score=85.47 Aligned_cols=100 Identities=21% Similarity=0.335 Sum_probs=66.0
Q ss_pred EEEecCCCCchHHHHHHHhcCcccccCCCCeEEecccccccchhhhhhhhccccCchhhHHHHHhHhHHHHHHHHHHHHH
Q 044777 218 LFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADAFKESDVIYRALSSRSHVDMLQTAELVHQSSTDAASSLLVTAL 297 (513)
Q Consensus 218 ILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDefR~~~p~y~~l~~~G~~Dp~qaae~v~~eAtrlA~~li~~aL 297 (513)
|+|.|+|||||||+++.|... .+..+++.|.+... +.|. .. + .......+..++
T Consensus 3 i~i~G~~GsGKSTla~~l~~~-------~~~~~i~~D~~~~~-~~~~---~~---~------------~~~~~~~~~~~~ 56 (171)
T PRK07261 3 IAIIGYSGSGKSTLARKLSQH-------YNCPVLHLDTLHFQ-PNWQ---ER---D------------DDDMIADISNFL 56 (171)
T ss_pred EEEEcCCCCCHHHHHHHHHHH-------hCCCeEecCCEEec-cccc---cC---C------------HHHHHHHHHHHH
Confidence 789999999999999999876 35668888888421 1110 10 0 011123345666
Q ss_pred HCCCcEEEECcCCChHHHHHHHHHHhhhhhcccccccccccccCCccccchhhhhhhhhhhhcccCCCCeEEEEEEEecC
Q 044777 298 NEGRDVIMDGTLSWVPFVVQTITMARNVHRHRYRMGVGYKKAEDGTVIENYWDRIGEREQAQDGKMRKPYRIELVGVVCD 377 (513)
Q Consensus 298 ~~GrsVIlDtTlS~~~~~~qii~~Ar~~h~~~y~~g~GYkv~~~g~~~e~Yw~~v~~a~~~~~~~~~~gYrI~Lv~V~~d 377 (513)
.++. +|+|++++...+.. .+..| + .++++.+|
T Consensus 57 ~~~~-wIidg~~~~~~~~~-~l~~a-------------------------------d---------------~vI~Ld~p 88 (171)
T PRK07261 57 LKHD-WIIDGNYSWCLYEE-RMQEA-------------------------------D---------------QIIFLNFS 88 (171)
T ss_pred hCCC-EEEcCcchhhhHHH-HHHHC-------------------------------C---------------EEEEEcCC
Confidence 6665 99999998643321 11111 0 36777889
Q ss_pred hHHHHHHHHHHHHh
Q 044777 378 AYLAVVRGIRRAIM 391 (513)
Q Consensus 378 pelAv~Rv~~Rv~~ 391 (513)
-..++.|++.|.+.
T Consensus 89 ~~~~~~R~lkR~~~ 102 (171)
T PRK07261 89 RFNCLYRAFKRYLK 102 (171)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999999775
No 49
>PRK12338 hypothetical protein; Provisional
Probab=98.55 E-value=2.3e-06 Score=88.94 Aligned_cols=131 Identities=19% Similarity=0.317 Sum_probs=81.2
Q ss_pred CCcEEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEe-cccccccchhh-----h---------hhhh---ccccCch
Q 044777 213 RSPVLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVI-EADAFKESDVI-----Y---------RALS---SRSHVDM 274 (513)
Q Consensus 213 ~~P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvI-naDefR~~~p~-----y---------~~l~---~~G~~Dp 274 (513)
++|.+++++|+|||||||+++.|+.. .++.++ .+|.+|+..-. | ..+. ....+++
T Consensus 2 ~~p~ii~i~G~sGsGKST~a~~la~~-------l~~~~~~~tD~~r~~~~~~~~~~~~P~l~~ssy~a~~~l~~~~~~~~ 74 (319)
T PRK12338 2 RKPYVILIGSASGIGKSTIASELART-------LNIKHLIETDFIREVVRGIIGKEYAPALHKSSYNAYTALRDKENFKN 74 (319)
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHH-------CCCeEEccChHHHHHHcCCCCcccCchhhcccHHHHhhcCCcccccc
Confidence 36899999999999999999999987 344444 89999863211 0 0000 0000000
Q ss_pred hh---HHHHHhHhHH---HHHHHHHHHHHHCCCcEEEECcCCChHHHHHHHHHHhhhhhcccccccccccccCCccccch
Q 044777 275 LQ---TAELVHQSST---DAASSLLVTALNEGRDVIMDGTLSWVPFVVQTITMARNVHRHRYRMGVGYKKAEDGTVIENY 348 (513)
Q Consensus 275 ~q---aae~v~~eAt---rlA~~li~~aL~~GrsVIlDtTlS~~~~~~qii~~Ar~~h~~~y~~g~GYkv~~~g~~~e~Y 348 (513)
.+ ...+ ...+. .....++..++..|.++|+||+.-.|.++... +
T Consensus 75 ~~~~i~~gf-~~q~~~V~~~i~~vi~r~~~~g~svIiEGvhl~P~~i~~~-~---------------------------- 124 (319)
T PRK12338 75 NEELICAGF-EEHASFVIPAIEKVIERAVTDSDDIVIEGVHLVPGLIDIE-Q---------------------------- 124 (319)
T ss_pred hHHHHHHHH-HHHHHHHHHHHHHHHHHHhcCCCeEEEEeccccHHHHhhh-h----------------------------
Confidence 00 0000 00111 23344677888999999999999888886521 0
Q ss_pred hhhhhhhhhhhcccCCCCeEEEEEEEecChHHHHHHHHHHHHhcCC
Q 044777 349 WDRIGEREQAQDGKMRKPYRIELVGVVCDAYLAVVRGIRRAIMCRR 394 (513)
Q Consensus 349 w~~v~~a~~~~~~~~~~gYrI~Lv~V~~dpelAv~Rv~~Rv~~gGh 394 (513)
.....-|.++....|.+...+|-..|...++|
T Consensus 125 --------------~~~~~~v~~~vl~~dee~h~~Rf~~R~~~~~r 156 (319)
T PRK12338 125 --------------FEENASIHFFILSADEEVHKERFVKRAMEIKR 156 (319)
T ss_pred --------------hcccCceEEEEEECCHHHHHHHHHHhhhccCC
Confidence 00111344444468999999999999987776
No 50
>PRK02496 adk adenylate kinase; Provisional
Probab=98.53 E-value=1.5e-06 Score=81.48 Aligned_cols=150 Identities=14% Similarity=0.077 Sum_probs=83.1
Q ss_pred EEEecCCCCchHHHHHHHhcCcccccCCCCeEEeccccc-ccchhhhhh-------hhccccCchhhHHHHHhHhHHHHH
Q 044777 218 LFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADAF-KESDVIYRA-------LSSRSHVDMLQTAELVHQSSTDAA 289 (513)
Q Consensus 218 ILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDef-R~~~p~y~~-------l~~~G~~Dp~qaae~v~~eAtrlA 289 (513)
++|.|+|||||||+++.|++. .++.+++.|++ ++..+.-.. ....|.. +. ..+.
T Consensus 4 i~i~G~pGsGKst~a~~la~~-------~~~~~i~~~~~~~~~~~~~~~~g~~~~~~~~~g~~--------~~---~~~~ 65 (184)
T PRK02496 4 LIFLGPPGAGKGTQAVVLAEH-------LHIPHISTGDILRQAIKEQTPLGIKAQGYMDKGEL--------VP---DQLV 65 (184)
T ss_pred EEEECCCCCCHHHHHHHHHHH-------hCCcEEEhHHHHHHHHhccChhHHHHHHHHHCCCc--------cC---HHHH
Confidence 788999999999999999986 46778887554 432211000 0000111 00 0122
Q ss_pred HHHHHHHHH---CCCcEEEECcCCChHHHHHHHHHHhhhhhcccccccccccccCCccccchhhhhhhhhhhhcccCCCC
Q 044777 290 SSLLVTALN---EGRDVIMDGTLSWVPFVVQTITMARNVHRHRYRMGVGYKKAEDGTVIENYWDRIGEREQAQDGKMRKP 366 (513)
Q Consensus 290 ~~li~~aL~---~GrsVIlDtTlS~~~~~~qii~~Ar~~h~~~y~~g~GYkv~~~g~~~e~Yw~~v~~a~~~~~~~~~~g 366 (513)
..++...+. ....+|+|+.-++......+.+.+.. .+
T Consensus 66 ~~~l~~~l~~~~~~~g~vldGfPr~~~q~~~l~~~~~~----------------------------------------~~ 105 (184)
T PRK02496 66 LDLVQERLQQPDAANGWILDGFPRKVTQAAFLDELLQE----------------------------------------IG 105 (184)
T ss_pred HHHHHHHHhCcCccCCEEEeCCCCCHHHHHHHHHHHHh----------------------------------------cC
Confidence 233333333 23579999988775543322221110 11
Q ss_pred eE-EEEEEEecChHHHHHHHHHHHHhcCCcCchhHHHHHHHHHHHHHHHhhccc---ceEEEEecC
Q 044777 367 YR-IELVGVVCDAYLAVVRGIRRAIMCRRAVRVKSQLKSHKRFANAFLTYCQLV---DSARLYSTN 428 (513)
Q Consensus 367 Yr-I~Lv~V~~dpelAv~Rv~~Rv~~gGh~VP~~~il~r~~rf~~nf~~~~~lv---D~a~lyDNs 428 (513)
.. ..++++.++++....|...| +.++-..+.+.+++..+..+........ ..+..+|.+
T Consensus 106 ~~~~~vi~l~~~~~~~~~Rl~~R---~~~dd~~~~~~~r~~~y~~~~~~v~~~~~~~~~~~~Ida~ 168 (184)
T PRK02496 106 QSGERVVNLDVPDDVVVERLLAR---GRKDDTEEVIRRRLEVYREQTAPLIDYYRDRQKLLTIDGN 168 (184)
T ss_pred CCCCEEEEEeCCHHHHHHHHhcC---CCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEECC
Confidence 11 23466778999999999888 3334456777777777776544433222 234555544
No 51
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=98.53 E-value=1.1e-06 Score=92.03 Aligned_cols=147 Identities=14% Similarity=0.130 Sum_probs=89.0
Q ss_pred EEEEecCCCCchHHHHHHHhcCcccc-cCCCCeEEeccccccc-c-------------hhhhhh---------hhccc-c
Q 044777 217 LLFMGGGMGAGKSTVLKDILKEPFWA-GAAGNAVVIEADAFKE-S-------------DVIYRA---------LSSRS-H 271 (513)
Q Consensus 217 LILmaG~pGAGKSTla~~Ll~~~f~~-~~~~~aVvInaDefR~-~-------------~p~y~~---------l~~~G-~ 271 (513)
+.++.|+|||||||+++.+... .. ..+..+.+++.|++-- . +..++. +...| +
T Consensus 1 ~~~l~Gl~GaGKST~~~~l~~~--l~~~~g~~v~~~~~Dd~i~~~~~~~~~~~~~~~~~k~~R~~i~~~le~~v~a~~~g 78 (340)
T TIGR03575 1 LCVLCGLPAAGKSTLARSLSAT--LRRERGWAVAVITYDDIIPEAAFELDQSREIPSQWKQFRQELLKYLEHFLVAVING 78 (340)
T ss_pred CeEEECCCCCCHHHHHHHHHHH--HHhccCCeEEEEcccccccccchhhhcCCCcHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 4688999999999999988754 21 2455778899998741 0 011110 00001 1
Q ss_pred -C-ch------hhHH---HHH-------hHhHH--HHHHHHHHHHHHCCCcEEEECcCCChHHHHHHHHHHhhhhhcccc
Q 044777 272 -V-DM------LQTA---ELV-------HQSST--DAASSLLVTALNEGRDVIMDGTLSWVPFVVQTITMARNVHRHRYR 331 (513)
Q Consensus 272 -~-Dp------~qaa---e~v-------~~eAt--rlA~~li~~aL~~GrsVIlDtTlS~~~~~~qii~~Ar~~h~~~y~ 331 (513)
. .+ .-.. ... ...+. .....++..++..+.-+|+|+||-.++++.++..+|+.
T Consensus 79 ~~~~~~~~~~~~~~~~nv~~L~~~g~vv~L~as~e~~~~rLi~~~LsrpllvilDd~fy~ks~Ryel~~LAr~------- 151 (340)
T TIGR03575 79 SELSAPPGKTEGMWEDFVDCLKEQGLIISSGASEAQGCHSLTKPAVSRPLCLVLDDNFYYQSMRYEVYQLARK------- 151 (340)
T ss_pred ccccCCcccchhhhHHHHHHHHhCCeEEEcCCcHHHHHHHHhHHHHhCCCCceecCCCCCHHHHHHHHHHHHH-------
Confidence 1 00 0000 000 00000 12233444556666679999999998888888877753
Q ss_pred cccccccccCCccccchhhhhhhhhhhhcccCCCCeEEEEEEEecChHHHHHHHHHHHHhcCCcCchhHHHHHHHHHH
Q 044777 332 MGVGYKKAEDGTVIENYWDRIGEREQAQDGKMRKPYRIELVGVVCDAYLAVVRGIRRAIMCRRAVRVKSQLKSHKRFA 409 (513)
Q Consensus 332 ~g~GYkv~~~g~~~e~Yw~~v~~a~~~~~~~~~~gYrI~Lv~V~~dpelAv~Rv~~Rv~~gGh~VP~~~il~r~~rf~ 409 (513)
.|..+.++++.+|++.+.+|...| ++.+|.+.+..-+.+|-
T Consensus 152 ---------------------------------~~~~~~~V~ld~ple~~l~RN~~R----~~~v~devie~m~~r~E 192 (340)
T TIGR03575 152 ---------------------------------YSLGFCQLFLDCPVESCLLRNKQR----PVPLPDETIQLMGRKIE 192 (340)
T ss_pred ---------------------------------hCCCEEEEEEeCCHHHHHHHHhcC----CCCCCHHHHHHHHHHhc
Confidence 222346788899999999999988 57889888865555443
No 52
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=98.51 E-value=5e-06 Score=78.65 Aligned_cols=24 Identities=25% Similarity=0.516 Sum_probs=21.5
Q ss_pred cEEEEEecCCCCchHHHHHHHhcC
Q 044777 215 PVLLFMGGGMGAGKSTVLKDILKE 238 (513)
Q Consensus 215 P~LILmaG~pGAGKSTla~~Ll~~ 238 (513)
..++++.|||||||||+++.|+..
T Consensus 2 g~~i~l~G~sGsGKsTl~~~l~~~ 25 (186)
T PRK10078 2 GKLIWLMGPSGSGKDSLLAALRQR 25 (186)
T ss_pred CcEEEEECCCCCCHHHHHHHHhcc
Confidence 357899999999999999999876
No 53
>PRK06547 hypothetical protein; Provisional
Probab=98.51 E-value=1.5e-06 Score=82.35 Aligned_cols=38 Identities=16% Similarity=0.314 Sum_probs=33.0
Q ss_pred CCcEEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEecccccc
Q 044777 213 RSPVLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADAFK 257 (513)
Q Consensus 213 ~~P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDefR 257 (513)
..|.+|+|.|++||||||+++.|++. .+..+|+.|.+.
T Consensus 13 ~~~~~i~i~G~~GsGKTt~a~~l~~~-------~~~~~~~~d~~~ 50 (172)
T PRK06547 13 GGMITVLIDGRSGSGKTTLAGALAAR-------TGFQLVHLDDLY 50 (172)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH-------hCCCeeccccee
Confidence 56889999999999999999999986 466788999873
No 54
>PRK11545 gntK gluconate kinase 1; Provisional
Probab=98.51 E-value=1.2e-06 Score=81.76 Aligned_cols=112 Identities=13% Similarity=0.073 Sum_probs=64.0
Q ss_pred ecCCCCchHHHHHHHhcCcccccCCCCeEEecccccccchhhhhhhhccccCchhhHHHHHhHhHHHHHHHHHHHHHHCC
Q 044777 221 GGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADAFKESDVIYRALSSRSHVDMLQTAELVHQSSTDAASSLLVTALNEG 300 (513)
Q Consensus 221 aG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDefR~~~p~y~~l~~~G~~Dp~qaae~v~~eAtrlA~~li~~aL~~G 300 (513)
.|+|||||||+++.+... .+.++|++|.+........... |. +.+.... ......+.......+...|
T Consensus 1 ~G~sGsGKSTla~~la~~-------l~~~~~~~d~~~~~~~~~~~~~--g~--~~~~~~~-~~~~~~~~~~~~~~~~~~~ 68 (163)
T PRK11545 1 MGVSGSGKSAVASEVAHQ-------LHAAFLDGDFLHPRRNIEKMAS--GE--PLNDDDR-KPWLQALNDAAFAMQRTNK 68 (163)
T ss_pred CCCCCCcHHHHHHHHHHH-------hCCeEEeCccCCchhhhccccC--CC--CCChhhH-HHHHHHHHHHHHHHHHcCC
Confidence 399999999999999887 4678999998621110000000 11 1111110 1111111111122233456
Q ss_pred CcEEEECcCCChHHHHHHHHHHhhhhhcccccccccccccCCccccchhhhhhhhhhhhcccCCCCeEEEEEEEecChHH
Q 044777 301 RDVIMDGTLSWVPFVVQTITMARNVHRHRYRMGVGYKKAEDGTVIENYWDRIGEREQAQDGKMRKPYRIELVGVVCDAYL 380 (513)
Q Consensus 301 rsVIlDtTlS~~~~~~qii~~Ar~~h~~~y~~g~GYkv~~~g~~~e~Yw~~v~~a~~~~~~~~~~gYrI~Lv~V~~dpel 380 (513)
.+||+ +|+..+.+++.+. ..+..+.++++.||+++
T Consensus 69 ~~viv-~s~~~~~~r~~~~--------------------------------------------~~~~~~~~v~l~a~~~~ 103 (163)
T PRK11545 69 VSLIV-CSALKKHYRDLLR--------------------------------------------EGNPNLSFIYLKGDFDV 103 (163)
T ss_pred ceEEE-EecchHHHHHHHH--------------------------------------------ccCCCEEEEEEECCHHH
Confidence 66777 8887766654221 12334567888999999
Q ss_pred HHHHHHHHH
Q 044777 381 AVVRGIRRA 389 (513)
Q Consensus 381 Av~Rv~~Rv 389 (513)
..+|+..|.
T Consensus 104 l~~Rl~~R~ 112 (163)
T PRK11545 104 IESRLKARK 112 (163)
T ss_pred HHHHHHhcc
Confidence 999999994
No 55
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=98.50 E-value=6.3e-07 Score=100.20 Aligned_cols=94 Identities=11% Similarity=0.100 Sum_probs=62.5
Q ss_pred CCCcEEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEecccccccchhhhhhhhccccCchhhHHHHHhHhHHHHHHH
Q 044777 212 DRSPVLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADAFKESDVIYRALSSRSHVDMLQTAELVHQSSTDAASS 291 (513)
Q Consensus 212 ~~~P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDefR~~~p~y~~l~~~G~~Dp~qaae~v~~eAtrlA~~ 291 (513)
..+|.+|+|+|+|||||||+++.|..... ..+.++++|++|++|+.+. +.-.+++.. . ....+.+..
T Consensus 457 ~~~~~~i~~~G~~gsGKst~a~~l~~~l~--~~~~~~~~l~~D~~r~~l~------~~~~~~~~~---r--~~~~~~l~~ 523 (632)
T PRK05506 457 GQKPATVWFTGLSGSGKSTIANLVERRLH--ALGRHTYLLDGDNVRHGLN------RDLGFSDAD---R--VENIRRVAE 523 (632)
T ss_pred CCCcEEEEecCCCCchHHHHHHHHHHHHH--HcCCCEEEEcChhhhhccC------CCCCCCHHH---H--HHHHHHHHH
Confidence 44699999999999999999999987632 2245788999999987442 100111111 0 112222233
Q ss_pred HHHHHHHCCCcEEEECcCCChHHHHHH
Q 044777 292 LLVTALNEGRDVIMDGTLSWVPFVVQT 318 (513)
Q Consensus 292 li~~aL~~GrsVIlDtTlS~~~~~~qi 318 (513)
+....+++|.+||+|+++..+..++.+
T Consensus 524 ~a~~~~~~G~~Vivda~~~~~~~R~~~ 550 (632)
T PRK05506 524 VARLMADAGLIVLVSFISPFREERELA 550 (632)
T ss_pred HHHHHHhCCCEEEEECCCCCHHHHHHH
Confidence 445567899999999998777776533
No 56
>PRK14530 adenylate kinase; Provisional
Probab=98.48 E-value=1.9e-06 Score=83.26 Aligned_cols=89 Identities=16% Similarity=0.242 Sum_probs=49.7
Q ss_pred CcEEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEeccccc-ccchhhhhhhhccccCchhh-HHHHHhH---hHHHH
Q 044777 214 SPVLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADAF-KESDVIYRALSSRSHVDMLQ-TAELVHQ---SSTDA 288 (513)
Q Consensus 214 ~P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDef-R~~~p~y~~l~~~G~~Dp~q-aae~v~~---eAtrl 288 (513)
.|. |+|.|+|||||||+++.|++. .++.+|+.|++ ++... ...+..+ .... ..++... .....
T Consensus 3 ~~~-I~i~G~pGsGKsT~~~~La~~-------~~~~~i~~g~~lr~~~~--~~~~~~~--~~~~~~~~~~~~g~~~~d~~ 70 (215)
T PRK14530 3 QPR-ILLLGAPGAGKGTQSSNLAEE-------FGVEHVTTGDALRANKQ--MDISDMD--TEYDTPGEYMDAGELVPDAV 70 (215)
T ss_pred CCE-EEEECCCCCCHHHHHHHHHHH-------hCCeEEeccHHHHHhcc--CCccccc--chHHHHHHHHHcCCCCCHHH
Confidence 344 777999999999999999987 46778877665 32210 0000000 0000 0000000 00123
Q ss_pred HHHHHHHHHHCCCcEEEECcCCChHH
Q 044777 289 ASSLLVTALNEGRDVIMDGTLSWVPF 314 (513)
Q Consensus 289 A~~li~~aL~~GrsVIlDtTlS~~~~ 314 (513)
...++...+.+...+|+|+..++...
T Consensus 71 ~~~~l~~~l~~~~~~IldG~pr~~~q 96 (215)
T PRK14530 71 VNEIVEEALSDADGFVLDGYPRNLEQ 96 (215)
T ss_pred HHHHHHHHHhcCCCEEEcCCCCCHHH
Confidence 44556666777778999986666544
No 57
>PF01591 6PF2K: 6-phosphofructo-2-kinase; InterPro: IPR013079 6-Phosphofructo-2-kinase (2.7.1.105 from EC, 3.1.3.46 from EC) is a bifunctional enzyme that catalyses both the synthesis and the degradation of fructose-2, 6-bisphosphate. The fructose-2,6-bisphosphatase reaction involves a phosphohistidine intermediate. The catalytic pathway is: ATP + D-fructose 6-phosphate = ADP + D-fructose 2,6-bisphosphate D-fructose 2,6-bisphosphate + H2O = 6-fructose 6-phosphate + Pi The enzyme is important in the regulation of hepatic carbohydrate metabolism and is found in greatest quantities in the liver, kidney and heart. In mammals, several genes often encode different isoforms, each of which differs in its tissue distribution and enzymatic activity []. The family described here bears a resemblance to the ATP-driven phospho-fructokinases, however, they share little sequence similarity, although a few residues seem key to their interaction with fructose 6-phosphate []. This domain forms the N-terminal region of this enzyme, while IPR013078 from INTERPRO forms the C-terminal domain.; GO: 0003873 6-phosphofructo-2-kinase activity, 0005524 ATP binding, 0006000 fructose metabolic process; PDB: 2DWO_A 3QPW_A 3QPV_A 3QPU_A 2I1V_B 2DWP_A 2AXN_A 1K6M_B 3BIF_A 2BIF_A ....
Probab=98.48 E-value=2.9e-06 Score=84.09 Aligned_cols=163 Identities=16% Similarity=0.150 Sum_probs=84.5
Q ss_pred CCCcEEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEecccccccchhhhhhhhccccCchh--hHHHHHhHhHHHHH
Q 044777 212 DRSPVLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADAFKESDVIYRALSSRSHVDML--QTAELVHQSSTDAA 289 (513)
Q Consensus 212 ~~~P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDefR~~~p~y~~l~~~G~~Dp~--qaae~v~~eAtrlA 289 (513)
...+.+|+|.|+||.|||+++++|..-.-|. +.+.-++|..++|.....-. .....+||. ++.....+-+...+
T Consensus 9 ~~~kl~ivmVGLPArGKs~ia~kl~ryL~w~--g~~~~vFn~g~yRR~~~~~~--~~~~ff~p~n~~~~~~R~~~a~~~l 84 (222)
T PF01591_consen 9 HAGKLVIVMVGLPARGKSYIARKLCRYLNWL--GVKTKVFNVGDYRRKLSGAP--QDAEFFDPDNEEAKKLREQIAKEAL 84 (222)
T ss_dssp ----EEEEEESSTTSSHHHHHHHHHHHHHHT--T--EEEEEHHHHHHHHHSS---S-GGGGSTT-HHHHHHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHhhc--CCCcceeecccceecccccc--cccccCCCCChHHHHHHHHHHHHHH
Confidence 3468999999999999999999998754474 46777888888875432110 110112332 22222222233444
Q ss_pred HHHHHHHH-HCCCcEEEECcCCChHHHHHHHHHHhhhhhcccccccccccccCCccccchhhhhhhhhhhhcccCCCCeE
Q 044777 290 SSLLVTAL-NEGRDVIMDGTLSWVPFVVQTITMARNVHRHRYRMGVGYKKAEDGTVIENYWDRIGEREQAQDGKMRKPYR 368 (513)
Q Consensus 290 ~~li~~aL-~~GrsVIlDtTlS~~~~~~qii~~Ar~~h~~~y~~g~GYkv~~~g~~~e~Yw~~v~~a~~~~~~~~~~gYr 368 (513)
..++.-.. +.|.=-|+|+|.++.+.++.+.+.+++ .|++
T Consensus 85 ~dl~~~l~~~~G~VAI~DATN~T~~RR~~l~~~~~~----------------------------------------~~~~ 124 (222)
T PF01591_consen 85 EDLIEWLQEEGGQVAIFDATNSTRERRKMLVERFKE----------------------------------------HGIK 124 (222)
T ss_dssp HHHHHHHHTS--SEEEEES---SHHHHHHHHHHHHH----------------------------------------TT-E
T ss_pred HHHHHHHhcCCCeEEEEeCCCCCHHHHHHHHHHHHH----------------------------------------cCCc
Confidence 44555444 467788999999999999888775522 3455
Q ss_pred EEEEEEecChHHHHHHHHHHHHhc----CCcCchhHHHHHHHHHHHHHHHhhcc
Q 044777 369 IELVGVVCDAYLAVVRGIRRAIMC----RRAVRVKSQLKSHKRFANAFLTYCQL 418 (513)
Q Consensus 369 I~Lv~V~~dpelAv~Rv~~Rv~~g----Gh~VP~~~il~r~~rf~~nf~~~~~l 418 (513)
|-++=+.|+-+--+.+-++++... -+-.|.+.+..-.+|...--..|-++
T Consensus 125 vlFIEsic~D~~ii~~NI~~~~~~spDY~~~~~e~A~~Df~~RI~~Ye~~YEpl 178 (222)
T PF01591_consen 125 VLFIESICDDPEIIERNIREKKQNSPDYKGMDPEEAIEDFKKRIEHYEKVYEPL 178 (222)
T ss_dssp EEEEEEE---HHHHHHHHHHHHTTSGGGTTS-HHHHHHHHHHHHHHHHTT----
T ss_pred EEEEEEEeCCHHHHHHHHHHHHcCCcccccCCHHHHHHHHHHHHHhhccccccc
Confidence 555556775445566777777654 33344444433334444433344444
No 58
>PRK04182 cytidylate kinase; Provisional
Probab=98.45 E-value=4.9e-06 Score=76.52 Aligned_cols=33 Identities=21% Similarity=0.337 Sum_probs=28.3
Q ss_pred EEEEecCCCCchHHHHHHHhcCcccccCCCCeEEeccccc
Q 044777 217 LLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADAF 256 (513)
Q Consensus 217 LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDef 256 (513)
+|+|.|++||||||+++.|++. .+..+++.|++
T Consensus 2 ~I~i~G~~GsGKstia~~la~~-------lg~~~id~~~~ 34 (180)
T PRK04182 2 IITISGPPGSGKTTVARLLAEK-------LGLKHVSAGEI 34 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHH-------cCCcEecHHHH
Confidence 6899999999999999999987 46678997654
No 59
>PRK06217 hypothetical protein; Validated
Probab=98.45 E-value=5.7e-07 Score=84.85 Aligned_cols=108 Identities=12% Similarity=0.068 Sum_probs=67.5
Q ss_pred EEEEecCCCCchHHHHHHHhcCcccccCCCCeEEecccccccchhhhhhhhccccCchhhHHHHHhHhHHHHHHHHHHHH
Q 044777 217 LLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADAFKESDVIYRALSSRSHVDMLQTAELVHQSSTDAASSLLVTA 296 (513)
Q Consensus 217 LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDefR~~~p~y~~l~~~G~~Dp~qaae~v~~eAtrlA~~li~~a 296 (513)
-|+|.|+|||||||+++.|.+. .+..+++.|.+... +....+.. ..+ .+....++...
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~-------l~~~~~~~D~~~~~-~~~~~~~~---~~~-----------~~~~~~~~~~~ 60 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAER-------LDIPHLDTDDYFWL-PTDPPFTT---KRP-----------PEERLRLLLED 60 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHH-------cCCcEEEcCceeec-cCCCCccc---cCC-----------HHHHHHHHHHH
Confidence 4899999999999999999987 46779999988431 10000000 000 01112334455
Q ss_pred HHCCCcEEEECcCCChHHHHHHHHHHhhhhhcccccccccccccCCccccchhhhhhhhhhhhcccCCCCeEEEEEEEec
Q 044777 297 LNEGRDVIMDGTLSWVPFVVQTITMARNVHRHRYRMGVGYKKAEDGTVIENYWDRIGEREQAQDGKMRKPYRIELVGVVC 376 (513)
Q Consensus 297 L~~GrsVIlDtTlS~~~~~~qii~~Ar~~h~~~y~~g~GYkv~~~g~~~e~Yw~~v~~a~~~~~~~~~~gYrI~Lv~V~~ 376 (513)
+..+.++|+|+.... +...+.. ..+ .++++.+
T Consensus 61 ~~~~~~~vi~G~~~~--~~~~~~~-------------------------------------------~~d---~~i~Ld~ 92 (183)
T PRK06217 61 LRPREGWVLSGSALG--WGDPLEP-------------------------------------------LFD---LVVFLTI 92 (183)
T ss_pred HhcCCCEEEEccHHH--HHHHHHh-------------------------------------------hCC---EEEEEEC
Confidence 566788999987743 2221111 011 2577889
Q ss_pred ChHHHHHHHHHHHHh-cCC
Q 044777 377 DAYLAVVRGIRRAIM-CRR 394 (513)
Q Consensus 377 dpelAv~Rv~~Rv~~-gGh 394 (513)
|+++.+.|+..|... .|+
T Consensus 93 ~~~~~~~Rl~~R~~~~~~~ 111 (183)
T PRK06217 93 PPELRLERLRLREFQRYGN 111 (183)
T ss_pred CHHHHHHHHHcCcccccCc
Confidence 999999999999643 344
No 60
>PRK00081 coaE dephospho-CoA kinase; Reviewed
Probab=98.44 E-value=2.1e-06 Score=82.19 Aligned_cols=36 Identities=39% Similarity=0.540 Sum_probs=30.7
Q ss_pred cEEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEeccccccc
Q 044777 215 PVLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADAFKE 258 (513)
Q Consensus 215 P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDefR~ 258 (513)
+.+|.+.|++||||||+++.+... ++.+|++|.+..
T Consensus 2 ~~~i~ltG~~gsGKst~~~~l~~~--------g~~~i~~D~~~~ 37 (194)
T PRK00081 2 MLIIGLTGGIGSGKSTVANLFAEL--------GAPVIDADAIAH 37 (194)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHc--------CCEEEEecHHHH
Confidence 468999999999999999988763 567999999853
No 61
>PRK13947 shikimate kinase; Provisional
Probab=98.43 E-value=5.8e-06 Score=76.18 Aligned_cols=35 Identities=31% Similarity=0.306 Sum_probs=30.4
Q ss_pred EEEecCCCCchHHHHHHHhcCcccccCCCCeEEecccccccc
Q 044777 218 LFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADAFKES 259 (513)
Q Consensus 218 ILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDefR~~ 259 (513)
|++.|+|||||||+++.|++. .+..+|+.|.+.+.
T Consensus 4 I~l~G~~GsGKst~a~~La~~-------lg~~~id~d~~~~~ 38 (171)
T PRK13947 4 IVLIGFMGTGKTTVGKRVATT-------LSFGFIDTDKEIEK 38 (171)
T ss_pred EEEEcCCCCCHHHHHHHHHHH-------hCCCEEECchhhhh
Confidence 789999999999999999987 46779999987543
No 62
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=98.43 E-value=5.8e-06 Score=74.32 Aligned_cols=34 Identities=32% Similarity=0.391 Sum_probs=29.6
Q ss_pred EEEecCCCCchHHHHHHHhcCcccccCCCCeEEeccccccc
Q 044777 218 LFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADAFKE 258 (513)
Q Consensus 218 ILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDefR~ 258 (513)
|+|.|+|||||||+++.|++. .++.++++|.+..
T Consensus 2 i~l~G~~GsGKstla~~la~~-------l~~~~~~~d~~~~ 35 (154)
T cd00464 2 IVLIGMMGAGKTTVGRLLAKA-------LGLPFVDLDELIE 35 (154)
T ss_pred EEEEcCCCCCHHHHHHHHHHH-------hCCCEEEchHHHH
Confidence 688999999999999999886 4677999998854
No 63
>PRK14528 adenylate kinase; Provisional
Probab=98.42 E-value=3.4e-06 Score=80.30 Aligned_cols=147 Identities=14% Similarity=0.112 Sum_probs=83.0
Q ss_pred EEEEecCCCCchHHHHHHHhcCcccccCCCCeEEeccccc-ccchhhhhhhhccccCchhhHHHHHhH---hHHHHHHHH
Q 044777 217 LLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADAF-KESDVIYRALSSRSHVDMLQTAELVHQ---SSTDAASSL 292 (513)
Q Consensus 217 LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDef-R~~~p~y~~l~~~G~~Dp~qaae~v~~---eAtrlA~~l 292 (513)
-+++.|+|||||||+++.|.+. .++.+|+.|++ |........+ | .+...+... -.......+
T Consensus 3 ~i~i~G~pGsGKtt~a~~la~~-------~~~~~is~~~~lr~~~~~~~~~---g----~~~~~~~~~g~lvp~~~~~~~ 68 (186)
T PRK14528 3 NIIFMGPPGAGKGTQAKILCER-------LSIPQISTGDILREAVKNQTAM---G----IEAKRYMDAGDLVPDSVVIGI 68 (186)
T ss_pred EEEEECCCCCCHHHHHHHHHHH-------hCCCeeeCCHHHHHHhhcCCHH---H----HHHHHHHhCCCccCHHHHHHH
Confidence 3788999999999999999876 35677877766 4322110000 0 000011000 000112223
Q ss_pred HHHHHHC---CCcEEEECcCCChHHHHHHHHHHhhhhhcccccccccccccCCccccchhhhhhhhhhhhcccCCCCeEE
Q 044777 293 LVTALNE---GRDVIMDGTLSWVPFVVQTITMARNVHRHRYRMGVGYKKAEDGTVIENYWDRIGEREQAQDGKMRKPYRI 369 (513)
Q Consensus 293 i~~aL~~---GrsVIlDtTlS~~~~~~qii~~Ar~~h~~~y~~g~GYkv~~~g~~~e~Yw~~v~~a~~~~~~~~~~gYrI 369 (513)
+...+.+ ...+|+|+--++....+.+.+.. ...|..+
T Consensus 69 ~~~~l~~~~~~~g~viDG~Pr~~~qa~~l~~~~----------------------------------------~~~~~~~ 108 (186)
T PRK14528 69 IKDRIREADCKNGFLLDGFPRTVEQADALDALL----------------------------------------KNEGKSI 108 (186)
T ss_pred HHHHHhCcCccCcEEEeCCCCCHHHHHHHHHHH----------------------------------------HhcCCCC
Confidence 3333322 34699998544443333222211 0112223
Q ss_pred EE-EEEecChHHHHHHHHHHHHhcCCcC-chhHHHHHHHHHHHHHHHhhc
Q 044777 370 EL-VGVVCDAYLAVVRGIRRAIMCRRAV-RVKSQLKSHKRFANAFLTYCQ 417 (513)
Q Consensus 370 ~L-v~V~~dpelAv~Rv~~Rv~~gGh~V-P~~~il~r~~rf~~nf~~~~~ 417 (513)
.+ +.+.||++.++.|...|....||.- .++.+.+|...|..+..+.+.
T Consensus 109 d~vI~Ld~~~~~~~~Rl~~R~~~~gr~dd~~e~i~~Rl~~y~~~~~pv~~ 158 (186)
T PRK14528 109 DKAINLEVPDGELLKRLLGRAEIEGRADDNEATIKNRLDNYNKKTLPLLD 158 (186)
T ss_pred CEEEEEECCHHHHHHHHhcCccccCCCCCCHHHHHHHHHHHHHHhHHHHH
Confidence 33 5567999999999999988877764 577888888888777655444
No 64
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=98.42 E-value=6.6e-06 Score=87.59 Aligned_cols=106 Identities=10% Similarity=0.191 Sum_probs=67.9
Q ss_pred HHHHHHHHHhhhhhhhccchhhHHHHHhhcCCCchhhhhHHHHHHHHHhH-HHHhhhhhhHHHHHHHHHHHHHHHhcCCC
Q 044777 117 KLVEEFERCILSYFAFHWSHADLMISQVLNSDAEPKKKLKHIVMQATREQ-RFERVTKNLKVARVFTTLVEEMKAMGLAP 195 (513)
Q Consensus 117 ~~~eele~~~~~~~~~~~~~~~~li~~~l~~~~~~~~~~~~~v~~a~r~~-rf~r~~~~~~v~r~~~~~ve~~~~~~~~~ 195 (513)
..+++|++ .|+.++++.+.. ..+++.+++. ..+.......+.+.+.+.+.+.-..
T Consensus 109 ~~~~~l~~--------------~L~~~dv~~~~~------~~i~~~~~~~~~~~~~~~~~~v~~~l~~~l~~~i~~---- 164 (388)
T PRK12723 109 PTILKIED--------------ILRENDFSESYI------KDINEFIKKEFSLSDLDDYDKVRDSVIIYIAKTIKC---- 164 (388)
T ss_pred HHHHHHHH--------------HHHHCCCCHHHH------HHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHHHhhc----
Confidence 44688888 888899987666 7777777665 3333333334444444433221110
Q ss_pred CCCcccchhcccccCCCCCcEEEEEecCCCCchHHHHHHHhcCcccc----cCCCCeEEeccccccc
Q 044777 196 NDDSQCTEVMAPVALGDRSPVLLFMGGGMGAGKSTVLKDILKEPFWA----GAAGNAVVIEADAFKE 258 (513)
Q Consensus 196 ~~~~~~~~vl~p~~~~~~~P~LILmaG~pGAGKSTla~~Ll~~~f~~----~~~~~aVvInaDefR~ 258 (513)
..|. .+...|.++++.|++|+||||++..|+.. +. ..+..+.+|+.|.+|.
T Consensus 165 ---------~~~~-~~~~~~~vi~lvGptGvGKTTT~aKLA~~--~~~~~~~~g~~V~lit~Dt~R~ 219 (388)
T PRK12723 165 ---------SGSI-IDNLKKRVFILVGPTGVGKTTTIAKLAAI--YGINSDDKSLNIKIITIDNYRI 219 (388)
T ss_pred ---------cCcc-ccCCCCeEEEEECCCCCCHHHHHHHHHHH--HHhhhccCCCeEEEEeccCccH
Confidence 0111 12346889999999999999999999864 22 1245677899999983
No 65
>TIGR00152 dephospho-CoA kinase. This model produces scores in the range of 0-25 bits against adenylate, guanylate, uridine, and thymidylate kinases.
Probab=98.41 E-value=2.8e-06 Score=80.34 Aligned_cols=34 Identities=35% Similarity=0.530 Sum_probs=29.6
Q ss_pred EEEEecCCCCchHHHHHHHhcCcccccCCCCeEEecccccc
Q 044777 217 LLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADAFK 257 (513)
Q Consensus 217 LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDefR 257 (513)
+|.+.|++||||||+++.+... +++.+|++|.+.
T Consensus 1 ~i~itG~~gsGKst~~~~l~~~-------~~~~~i~~D~~~ 34 (188)
T TIGR00152 1 IIGLTGGIGSGKSTVANYLADK-------YHFPVIDADKIA 34 (188)
T ss_pred CEEEECCCCCCHHHHHHHHHHh-------cCCeEEeCCHHH
Confidence 3789999999999999999876 457899999995
No 66
>PRK14732 coaE dephospho-CoA kinase; Provisional
Probab=98.39 E-value=3.6e-06 Score=81.33 Aligned_cols=34 Identities=38% Similarity=0.444 Sum_probs=28.4
Q ss_pred EEEEecCCCCchHHHHHHHhcCcccccCCCCeEEeccccccc
Q 044777 217 LLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADAFKE 258 (513)
Q Consensus 217 LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDefR~ 258 (513)
++.+.|++||||||+++.+... +.++|++|.+..
T Consensus 1 ~i~itG~~gsGKst~~~~l~~~--------g~~~i~~D~i~~ 34 (196)
T PRK14732 1 LIGITGMIGGGKSTALKILEEL--------GAFGISADRLAK 34 (196)
T ss_pred CEEEECCCCccHHHHHHHHHHC--------CCEEEecchHHH
Confidence 4789999999999999977543 578899999953
No 67
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=98.39 E-value=1.2e-05 Score=78.63 Aligned_cols=66 Identities=18% Similarity=0.286 Sum_probs=46.4
Q ss_pred hhhHHHHHHHHHHHHHHHhcCCCCCCcccchhcccccCCCCCcEEEEEecCCCCchHHHHHHHhcCcccccCCCCeEE-e
Q 044777 173 KNLKVARVFTTLVEEMKAMGLAPNDDSQCTEVMAPVALGDRSPVLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVV-I 251 (513)
Q Consensus 173 ~~~~v~r~~~~~ve~~~~~~~~~~~~~~~~~vl~p~~~~~~~P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVv-I 251 (513)
++.++.+.+..+++.|... .....+|.++.+.|+|||||||+++.|... +...++.+.+ |
T Consensus 8 ~~~~~~~~~~~l~~~~~~~-----------------~~~~~~~~iigi~G~~GsGKTTl~~~L~~~--l~~~~g~~~v~i 68 (229)
T PRK09270 8 RDEEIEAVHKPLLRRLAAL-----------------QAEPQRRTIVGIAGPPGAGKSTLAEFLEAL--LQQDGELPAIQV 68 (229)
T ss_pred ChHhHHHHHHHHHHHHHHH-----------------HhcCCCCEEEEEECCCCCCHHHHHHHHHHH--hhhccCCceEEE
Confidence 4566777888888665444 123457999999999999999999999875 3223344444 7
Q ss_pred cccccc
Q 044777 252 EADAFK 257 (513)
Q Consensus 252 naDefR 257 (513)
.-|.|.
T Consensus 69 ~~D~~~ 74 (229)
T PRK09270 69 PMDGFH 74 (229)
T ss_pred eccccc
Confidence 777763
No 68
>PRK13946 shikimate kinase; Provisional
Probab=98.39 E-value=7.5e-06 Score=77.53 Aligned_cols=40 Identities=30% Similarity=0.255 Sum_probs=33.8
Q ss_pred CCCcEEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEeccccccc
Q 044777 212 DRSPVLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADAFKE 258 (513)
Q Consensus 212 ~~~P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDefR~ 258 (513)
...+..|++.|++||||||+++.|++. .++.++++|...+
T Consensus 7 ~~~~~~I~l~G~~GsGKsti~~~LA~~-------Lg~~~id~D~~~~ 46 (184)
T PRK13946 7 ALGKRTVVLVGLMGAGKSTVGRRLATM-------LGLPFLDADTEIE 46 (184)
T ss_pred ccCCCeEEEECCCCCCHHHHHHHHHHH-------cCCCeECcCHHHH
Confidence 346778999999999999999999987 4667999998643
No 69
>PRK00698 tmk thymidylate kinase; Validated
Probab=98.38 E-value=3.1e-05 Score=72.99 Aligned_cols=25 Identities=28% Similarity=0.325 Sum_probs=22.6
Q ss_pred CcEEEEEecCCCCchHHHHHHHhcC
Q 044777 214 SPVLLFMGGGMGAGKSTVLKDILKE 238 (513)
Q Consensus 214 ~P~LILmaG~pGAGKSTla~~Ll~~ 238 (513)
++.+|++.|+.||||||+++.|.+.
T Consensus 2 ~~~~I~ieG~~gsGKsT~~~~L~~~ 26 (205)
T PRK00698 2 RGMFITIEGIDGAGKSTQIELLKEL 26 (205)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHH
Confidence 4679999999999999999999875
No 70
>PRK14730 coaE dephospho-CoA kinase; Provisional
Probab=98.36 E-value=3.5e-06 Score=81.15 Aligned_cols=35 Identities=26% Similarity=0.452 Sum_probs=30.5
Q ss_pred EEEEecCCCCchHHHHHHHhcCcccccCCCCeEEeccccccc
Q 044777 217 LLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADAFKE 258 (513)
Q Consensus 217 LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDefR~ 258 (513)
+|.+.|++||||||+++.+... .++.+|++|.+..
T Consensus 3 ~i~itG~~gsGKst~~~~l~~~-------~g~~~i~~D~~~~ 37 (195)
T PRK14730 3 RIGLTGGIASGKSTVGNYLAQQ-------KGIPILDADIYAR 37 (195)
T ss_pred EEEEECCCCCCHHHHHHHHHHh-------hCCeEeeCcHHHH
Confidence 6899999999999999999875 3678999999953
No 71
>PRK08118 topology modulation protein; Reviewed
Probab=98.36 E-value=1.9e-06 Score=81.02 Aligned_cols=103 Identities=17% Similarity=0.220 Sum_probs=65.7
Q ss_pred EEEEecCCCCchHHHHHHHhcCcccccCCCCeEEecccccccchhhhhhhhccccCchhhHHHHHhHhHHHHHHHHHHHH
Q 044777 217 LLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADAFKESDVIYRALSSRSHVDMLQTAELVHQSSTDAASSLLVTA 296 (513)
Q Consensus 217 LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDefR~~~p~y~~l~~~G~~Dp~qaae~v~~eAtrlA~~li~~a 296 (513)
-|+|.|+|||||||+++.|... .+..+++.|.+... +.|. . +.. .....++++.
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~-------l~~~~~~lD~l~~~-~~w~---~------------~~~---~~~~~~~~~~ 56 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEK-------LNIPVHHLDALFWK-PNWE---G------------VPK---EEQITVQNEL 56 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHH-------hCCCceecchhhcc-cCCc---C------------CCH---HHHHHHHHHH
Confidence 3788999999999999999987 56778888877321 1110 0 000 1112233444
Q ss_pred HHCCCcEEEECcCCChHHHHHHHHHHhhhhhcccccccccccccCCccccchhhhhhhhhhhhcccCCCCeEEEEEEEec
Q 044777 297 LNEGRDVIMDGTLSWVPFVVQTITMARNVHRHRYRMGVGYKKAEDGTVIENYWDRIGEREQAQDGKMRKPYRIELVGVVC 376 (513)
Q Consensus 297 L~~GrsVIlDtTlS~~~~~~qii~~Ar~~h~~~y~~g~GYkv~~~g~~~e~Yw~~v~~a~~~~~~~~~~gYrI~Lv~V~~ 376 (513)
+ ++.++|+|+.+... .......+ + .++++.+
T Consensus 57 ~-~~~~wVidG~~~~~--~~~~l~~~-------------------------------d---------------~vi~Ld~ 87 (167)
T PRK08118 57 V-KEDEWIIDGNYGGT--MDIRLNAA-------------------------------D---------------TIIFLDI 87 (167)
T ss_pred h-cCCCEEEeCCcchH--HHHHHHhC-------------------------------C---------------EEEEEeC
Confidence 4 34689999987642 11111100 1 4678889
Q ss_pred ChHHHHHHHHHHHHh-cCC
Q 044777 377 DAYLAVVRGIRRAIM-CRR 394 (513)
Q Consensus 377 dpelAv~Rv~~Rv~~-gGh 394 (513)
|.++++.|+..|... .|.
T Consensus 88 p~~~~~~R~~~R~~~~~g~ 106 (167)
T PRK08118 88 PRTICLYRAFKRRVQYRGK 106 (167)
T ss_pred CHHHHHHHHHHHHHHHcCC
Confidence 999999999999875 443
No 72
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=98.34 E-value=2.3e-06 Score=79.50 Aligned_cols=23 Identities=43% Similarity=0.790 Sum_probs=21.2
Q ss_pred EEEEEecCCCCchHHHHHHHhcC
Q 044777 216 VLLFMGGGMGAGKSTVLKDILKE 238 (513)
Q Consensus 216 ~LILmaG~pGAGKSTla~~Ll~~ 238 (513)
.+++|.|||||||||+++.|...
T Consensus 2 ~ii~l~G~~GsGKsTl~~~L~~~ 24 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLVKALLEE 24 (180)
T ss_pred cEEEEECCCCCCHHHHHHHHHcc
Confidence 57899999999999999999885
No 73
>PRK14737 gmk guanylate kinase; Provisional
Probab=98.33 E-value=3e-06 Score=81.16 Aligned_cols=148 Identities=23% Similarity=0.220 Sum_probs=80.8
Q ss_pred CcEEEEEecCCCCchHHHHHHHhcCc--cc-------------ccCCCCeEEecccccccchhhhhhhhccccCchhhHH
Q 044777 214 SPVLLFMGGGMGAGKSTVLKDILKEP--FW-------------AGAAGNAVVIEADAFKESDVIYRALSSRSHVDMLQTA 278 (513)
Q Consensus 214 ~P~LILmaG~pGAGKSTla~~Ll~~~--f~-------------~~~~~~aVvInaDefR~~~p~y~~l~~~G~~Dp~qaa 278 (513)
+|.+++|+||+||||||+++.|.+.. ++ +.++.+..+|+.++|.+.. ..|.+ .+.+
T Consensus 3 ~~~~ivl~GpsG~GK~tl~~~l~~~~~~~~~~v~~TTR~~r~gE~~G~dY~fvs~~~F~~~i-------~~~~f--~e~~ 73 (186)
T PRK14737 3 SPKLFIISSVAGGGKSTIIQALLEEHPDFLFSISCTTRAPRPGDEEGKTYFFLTIEEFKKGI-------ADGEF--LEWA 73 (186)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhcCCccccccCccCCCCCCCCCCCceeEeCCHHHHHHHH-------HcCCe--EEEE
Confidence 68999999999999999999998752 11 1112334566666664321 11111 0000
Q ss_pred HH-HhHhHHHHHHHHHHHHHHCCCcEEEECcCCChHHHHHHHHHHhhhhhcccccccccccccCCccccchhhhhhhhhh
Q 044777 279 EL-VHQSSTDAASSLLVTALNEGRDVIMDGTLSWVPFVVQTITMARNVHRHRYRMGVGYKKAEDGTVIENYWDRIGEREQ 357 (513)
Q Consensus 279 e~-v~~eAtrlA~~li~~aL~~GrsVIlDtTlS~~~~~~qii~~Ar~~h~~~y~~g~GYkv~~~g~~~e~Yw~~v~~a~~ 357 (513)
++ .+...+. ..-++..+++|..+|+|..... ..++.+
T Consensus 74 ~~~g~~YGt~--~~~i~~~~~~g~~~i~d~~~~g---~~~l~~------------------------------------- 111 (186)
T PRK14737 74 EVHDNYYGTP--KAFIEDAFKEGRSAIMDIDVQG---AKIIKE------------------------------------- 111 (186)
T ss_pred EECCeeecCc--HHHHHHHHHcCCeEEEEcCHHH---HHHHHH-------------------------------------
Confidence 00 0001111 2236678899999999975433 221111
Q ss_pred hhcccCCCCeEEEEEEEec-ChHHHHHHHHHHHHhcCCcCchhHHHHHHHHHHHHHHHhhcccceEEE
Q 044777 358 AQDGKMRKPYRIELVGVVC-DAYLAVVRGIRRAIMCRRAVRVKSQLKSHKRFANAFLTYCQLVDSARL 424 (513)
Q Consensus 358 ~~~~~~~~gYrI~Lv~V~~-dpelAv~Rv~~Rv~~gGh~VP~~~il~r~~rf~~nf~~~~~lvD~a~l 424 (513)
..|-.+..++|.+ +.+.-..|...| |+. +.+.+.++..+.... ..+...+|.++.
T Consensus 112 ------~~~~~~~~Ifi~pps~e~l~~RL~~R----~~~-s~e~i~~Rl~~~~~e-~~~~~~~D~vI~ 167 (186)
T PRK14737 112 ------KFPERIVTIFIEPPSEEEWEERLIHR----GTD-SEESIEKRIENGIIE-LDEANEFDYKII 167 (186)
T ss_pred ------hCCCCeEEEEEECCCHHHHHHHHHhc----CCC-CHHHHHHHHHHHHHH-HhhhccCCEEEE
Confidence 0111223566654 577777777766 443 556677666654432 345677887543
No 74
>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional
Probab=98.32 E-value=1.3e-05 Score=90.38 Aligned_cols=168 Identities=15% Similarity=0.095 Sum_probs=99.1
Q ss_pred ccCCCCCcEEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEecccccccchhhhhhhhccccCchhhHHHHHhHhHHH
Q 044777 208 VALGDRSPVLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADAFKESDVIYRALSSRSHVDMLQTAELVHQSSTD 287 (513)
Q Consensus 208 ~~~~~~~P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDefR~~~p~y~~l~~~G~~Dp~qaae~v~~eAtr 287 (513)
.+++.....+++|.|.||+||||+++.|....-|. +.++.+++.|.+|.....- .... +++......-...+..
T Consensus 208 ~p~p~~~~~~~~~vglp~~GKStia~~L~~~l~~~--~~~~~~~~~~~~rr~~~~~-~~~~---~~~~~~~~~e~~~~~~ 281 (664)
T PTZ00322 208 VPQPMMGSLIVIMVGLPGRGKTYVARQIQRYFQWN--GLQSRIFIHQAYRRRLERR-GGAV---SSPTGAAEVEFRIAKA 281 (664)
T ss_pred cCcccccceeEEecccCCCChhHHHHHHHHHHHhc--CCCcEEEccchhHhhhccC-CCCc---CCCCCHHHHHHHHHHH
Confidence 33344456799999999999999999998864453 3456677777776544210 0011 1111111111111122
Q ss_pred HHHHHHHHHHHCCCcEEEECcCCChHHHHHHHHHHhhhhhcccccccccccccCCccccchhhhhhhhhhhhcccCCCCe
Q 044777 288 AASSLLVTALNEGRDVIMDGTLSWVPFVVQTITMARNVHRHRYRMGVGYKKAEDGTVIENYWDRIGEREQAQDGKMRKPY 367 (513)
Q Consensus 288 lA~~li~~aL~~GrsVIlDtTlS~~~~~~qii~~Ar~~h~~~y~~g~GYkv~~~g~~~e~Yw~~v~~a~~~~~~~~~~gY 367 (513)
++..+..-.++.|..+|+|+|.++...+..+++++++. ....|.
T Consensus 282 ~~~d~~~~v~~~GgvaI~DatN~t~~rR~~~~~~~~~~------------------------------------~~~~~~ 325 (664)
T PTZ00322 282 IAHDMTTFICKTDGVAVLDGTNTTHARRMALLRAIRET------------------------------------GLIRMT 325 (664)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHHc------------------------------------CCCccC
Confidence 22223344556788999999999987777776655331 122356
Q ss_pred EEEEEEEecChHHHHHHHHHHHHhcCCcCchhHHHHHHHHHHHHHHHhhc
Q 044777 368 RIELVGVVCDAYLAVVRGIRRAIMCRRAVRVKSQLKSHKRFANAFLTYCQ 417 (513)
Q Consensus 368 rI~Lv~V~~dpelAv~Rv~~Rv~~gGh~VP~~~il~r~~rf~~nf~~~~~ 417 (513)
+|.++-+.|+...-+.|-+.|......+.+++...+-+++....-..|-.
T Consensus 326 ~vifle~vc~~~~~i~~ni~r~~~~~~~~~e~~~~~~~~~~~~~~~~Ye~ 375 (664)
T PTZ00322 326 RVVFVEVVNNNSETIRRNVLRAKEMFPGAPEDFVDRYYEVIEQLEAVYKS 375 (664)
T ss_pred cEEEEEEeCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhccc
Confidence 67777778876666888888876655555554444444444444344433
No 75
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=98.32 E-value=4.2e-06 Score=89.70 Aligned_cols=172 Identities=19% Similarity=0.285 Sum_probs=95.3
Q ss_pred hhhcCCCCcchHHHHHHHHHHHHhhhhhhhccchhhHHHHHhhcCCCchhhhhHHHHHHHHHhHHHHhhhhhhHHHHHHH
Q 044777 103 TFFSSEPAADSLFIKLVEEFERCILSYFAFHWSHADLMISQVLNSDAEPKKKLKHIVMQATREQRFERVTKNLKVARVFT 182 (513)
Q Consensus 103 ~~~~~~~~~~~l~~~~~eele~~~~~~~~~~~~~~~~li~~~l~~~~~~~~~~~~~v~~a~r~~rf~r~~~~~~v~r~~~ 182 (513)
.+.+....+|.-..+.+.|+-+ .||.+|.....- +++.+.|-+..-. +.+.+.+.-.+.|-
T Consensus 15 kl~g~~~i~E~~i~e~~reir~--------------ALLeADVnl~vV--k~fi~~ikera~g---~ev~~~l~p~q~~i 75 (451)
T COG0541 15 KLRGKGRITEKDVKEALREIRR--------------ALLEADVNLKVV--KDFIKRIKERALG---EEVPKGLTPGQQFI 75 (451)
T ss_pred HhhCCCcCCHHHHHHHHHHHHH--------------HHHhccccHHHH--HHHHHHHHHHhcc---ccCCCCCCHHHHHH
Confidence 3445566777777788888888 666665553322 2444443333332 33444333333332
Q ss_pred HHH-HHHHHhcCCCCCCcccchhccc----ccCCCCCcEEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEecccccc
Q 044777 183 TLV-EEMKAMGLAPNDDSQCTEVMAP----VALGDRSPVLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADAFK 257 (513)
Q Consensus 183 ~~v-e~~~~~~~~~~~~~~~~~vl~p----~~~~~~~P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDefR 257 (513)
..| ||+ .++|.+ ..-....|.+|+|+|+-||||||.+..|+.. +...+..+.+|.+|.+|
T Consensus 76 KiV~eEL-------------v~llG~~~~~~~l~~~~P~vImmvGLQGsGKTTt~~KLA~~--lkk~~~kvllVaaD~~R 140 (451)
T COG0541 76 KIVYEEL-------------VKLLGGENSELNLAKKPPTVILMVGLQGSGKTTTAGKLAKY--LKKKGKKVLLVAADTYR 140 (451)
T ss_pred HHHHHHH-------------HHHhCCCCcccccCCCCCeEEEEEeccCCChHhHHHHHHHH--HHHcCCceEEEecccCC
Confidence 222 222 223332 1111457999999999999999999999874 44566788899999999
Q ss_pred cc-hhhhhhhhcc-ccCchhhHHHHHhHhHHHHHHHHHHHHHHCCCcEE-EECcCCC
Q 044777 258 ES-DVIYRALSSR-SHVDMLQTAELVHQSSTDAASSLLVTALNEGRDVI-MDGTLSW 311 (513)
Q Consensus 258 ~~-~p~y~~l~~~-G~~Dp~qaae~v~~eAtrlA~~li~~aL~~GrsVI-lDtTlS~ 311 (513)
.. ....+.+..+ +.. - +++-.....-+++.+.++.+-..+++|| +||.-+.
T Consensus 141 pAA~eQL~~La~q~~v~-~--f~~~~~~~Pv~Iak~al~~ak~~~~DvvIvDTAGRl 194 (451)
T COG0541 141 PAAIEQLKQLAEQVGVP-F--FGSGTEKDPVEIAKAALEKAKEEGYDVVIVDTAGRL 194 (451)
T ss_pred hHHHHHHHHHHHHcCCc-e--ecCCCCCCHHHHHHHHHHHHHHcCCCEEEEeCCCcc
Confidence 31 1111111111 000 0 0000111233577778889989998665 5554443
No 76
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=98.32 E-value=9e-06 Score=74.32 Aligned_cols=33 Identities=27% Similarity=0.393 Sum_probs=28.7
Q ss_pred EEEEecCCCCchHHHHHHHhcCcccccCCCCeEEeccccc
Q 044777 217 LLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADAF 256 (513)
Q Consensus 217 LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDef 256 (513)
+|++.|++||||||+++.+++. .++.+++.|.+
T Consensus 2 iI~i~G~~GSGKstia~~la~~-------lg~~~~~~~~~ 34 (171)
T TIGR02173 2 IITISGPPGSGKTTVAKILAEK-------LSLKLISAGDI 34 (171)
T ss_pred EEEEECCCCCCHHHHHHHHHHH-------cCCceecHHHH
Confidence 6899999999999999999886 46778998665
No 77
>COG2074 2-phosphoglycerate kinase [Carbohydrate transport and metabolism]
Probab=98.31 E-value=1.8e-05 Score=80.06 Aligned_cols=141 Identities=20% Similarity=0.261 Sum_probs=90.1
Q ss_pred CCCcEEEEEecCCCCchHHHHHHHhcCcccccCCCCe-EEecccccccc---------hh-----hhhhhhccccC---c
Q 044777 212 DRSPVLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNA-VVIEADAFKES---------DV-----IYRALSSRSHV---D 273 (513)
Q Consensus 212 ~~~P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~a-VvInaDefR~~---------~p-----~y~~l~~~G~~---D 273 (513)
.+.|.++|++|++|.||||++..++.. .+. .+|.+|.+|+- .| .|.++...+.. +
T Consensus 86 ~~~p~IILIGGasGVGkStIA~ElA~r-------LgI~~visTD~IREvlR~ii~~~l~PtLh~Ssy~Awkalr~~~~~~ 158 (299)
T COG2074 86 MKRPLIILIGGASGVGKSTIAGELARR-------LGIRSVISTDSIREVLRKIISPELLPTLHTSSYDAWKALRDPTDEN 158 (299)
T ss_pred cCCCeEEEecCCCCCChhHHHHHHHHH-------cCCceeecchHHHHHHHHhCCHHhcchhhHhHHHHHHHhcCCCCCc
Confidence 457999999999999999999999987 233 47899999862 22 12222221111 1
Q ss_pred hhhHHHHHhHhHH--HHHHHHHHHHHHCCCcEEEECcCCChHHHHHHHHHHhhhhhcccccccccccccCCccccchhhh
Q 044777 274 MLQTAELVHQSST--DAASSLLVTALNEGRDVIMDGTLSWVPFVVQTITMARNVHRHRYRMGVGYKKAEDGTVIENYWDR 351 (513)
Q Consensus 274 p~qaae~v~~eAt--rlA~~li~~aL~~GrsVIlDtTlS~~~~~~qii~~Ar~~h~~~y~~g~GYkv~~~g~~~e~Yw~~ 351 (513)
|. .+.+..+.+. --.+..++.|+++|.|+|+|++.--|.+++.-
T Consensus 159 pi-iaGF~dqa~~V~~GI~~VI~RAi~eG~~lIIEGvHlVPg~i~~~--------------------------------- 204 (299)
T COG2074 159 PI-IAGFEDQASAVMVGIEAVIERAIEEGEDLIIEGVHLVPGLIKEE--------------------------------- 204 (299)
T ss_pred ch-hhhHHHHhHHHHHHHHHHHHHHHhcCcceEEEeeeeccccccHh---------------------------------
Confidence 11 1122211111 23455789999999999999998777654311
Q ss_pred hhhhhhhhcccCCCCeEEEEEEEe-cChHHHHHHHHHHHHhcCCcCchhHHHHHH
Q 044777 352 IGEREQAQDGKMRKPYRIELVGVV-CDAYLAVVRGIRRAIMCRRAVRVKSQLKSH 405 (513)
Q Consensus 352 v~~a~~~~~~~~~~gYrI~Lv~V~-~dpelAv~Rv~~Rv~~gGh~VP~~~il~r~ 405 (513)
. .++-+.+++++ .|+++--.|--.|...+-..=|-..-++.+
T Consensus 205 -----------~-~~~n~~~~~l~i~dee~Hr~RF~~R~~~t~~~rp~~Ryl~yf 247 (299)
T COG2074 205 -----------A-LGNNVFMFMLYIADEELHRERFYDRIRYTHASRPGGRYLEYF 247 (299)
T ss_pred -----------h-hccceEEEEEEeCCHHHHHHHHHHHHHHHhccCchhHHHHHH
Confidence 1 12334556664 699999999999987775555554444333
No 78
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=98.28 E-value=5.1e-05 Score=70.32 Aligned_cols=33 Identities=21% Similarity=0.344 Sum_probs=24.8
Q ss_pred EEEEecCCCCchHHHHHHHhcCcccccCCCCeEEe
Q 044777 217 LLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVI 251 (513)
Q Consensus 217 LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvI 251 (513)
+|++.|++||||||+++.|.+. +...+..++.+
T Consensus 2 ~I~ieG~~GsGKtT~~~~L~~~--l~~~g~~v~~~ 34 (200)
T cd01672 2 FIVFEGIDGAGKTTLIELLAER--LEARGYEVVLT 34 (200)
T ss_pred EEEEECCCCCCHHHHHHHHHHH--HHHcCCeEEEE
Confidence 6899999999999999999876 33333444444
No 79
>PRK00131 aroK shikimate kinase; Reviewed
Probab=98.28 E-value=1.8e-05 Score=72.19 Aligned_cols=38 Identities=32% Similarity=0.286 Sum_probs=33.1
Q ss_pred CcEEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEeccccccc
Q 044777 214 SPVLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADAFKE 258 (513)
Q Consensus 214 ~P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDefR~ 258 (513)
.|.+|+|.|+|||||||+++.|++. .+..+++.|.+.+
T Consensus 3 ~~~~i~l~G~~GsGKstla~~La~~-------l~~~~~d~d~~~~ 40 (175)
T PRK00131 3 KGPNIVLIGFMGAGKSTIGRLLAKR-------LGYDFIDTDHLIE 40 (175)
T ss_pred CCCeEEEEcCCCCCHHHHHHHHHHH-------hCCCEEEChHHHH
Confidence 5779999999999999999999987 4677899998853
No 80
>cd01673 dNK Deoxyribonucleoside kinase (dNK) catalyzes the phosphorylation of deoxyribonucleosides to yield corresponding monophosphates (dNMPs). This family consists of various deoxynucleoside kinases including deoxyribo- cytidine (EC 2.7.1.74), guanosine (EC 2.7.1.113), adenosine (EC 2.7.1.76), and thymidine (EC 2.7.1.21) kinases. They are key enzymes in the salvage of deoxyribonucleosides originating from extra- or intracellular breakdown of DNA.
Probab=98.27 E-value=1.8e-05 Score=74.56 Aligned_cols=22 Identities=36% Similarity=0.730 Sum_probs=19.9
Q ss_pred EEEEecCCCCchHHHHHHHhcC
Q 044777 217 LLFMGGGMGAGKSTVLKDILKE 238 (513)
Q Consensus 217 LILmaG~pGAGKSTla~~Ll~~ 238 (513)
+|.+.|++||||||+++.|.+.
T Consensus 1 ~I~ieG~~GsGKSTl~~~L~~~ 22 (193)
T cd01673 1 VIVVEGNIGAGKSTLAKELAEH 22 (193)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999875
No 81
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.26 E-value=5.2e-06 Score=87.88 Aligned_cols=167 Identities=16% Similarity=0.231 Sum_probs=101.9
Q ss_pred cchHHHHHHHHHHHHhhhhhhhccchhhHHHHHhhcCCCchhhhhHHHHHHHHHhH-HHHhhhhhhHHHHHHHHHHHHHH
Q 044777 111 ADSLFIKLVEEFERCILSYFAFHWSHADLMISQVLNSDAEPKKKLKHIVMQATREQ-RFERVTKNLKVARVFTTLVEEMK 189 (513)
Q Consensus 111 ~~~l~~~~~eele~~~~~~~~~~~~~~~~li~~~l~~~~~~~~~~~~~v~~a~r~~-rf~r~~~~~~v~r~~~~~ve~~~ 189 (513)
++......|.|+.+ +||.+|.+. .+-..+.+.+|++ -++.+.....-+|.+..+|..
T Consensus 24 ~~~~l~~~L~eI~~--------------ALLesDV~~------~lV~~l~~nir~~i~~~~~~~G~nk~r~i~~~vf~-- 81 (483)
T KOG0780|consen 24 DETALNTMLKEICR--------------ALLESDVNP------RLVKELRENIRKIINLEKLASGVNKRRIIQKAVFD-- 81 (483)
T ss_pred hHHHHHHHHHHHHH--------------HHHhccCCH------HHHHHHHHHHHHHhchhhhccccCHHHHHHHHHHH--
Confidence 33455668899999 777777763 3445666677775 667777665555555555521
Q ss_pred HhcCCCCCCcccchhcccc----cCCCCCcEEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEecccccccchhhhhh
Q 044777 190 AMGLAPNDDSQCTEVMAPV----ALGDRSPVLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADAFKESDVIYRA 265 (513)
Q Consensus 190 ~~~~~~~~~~~~~~vl~p~----~~~~~~P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDefR~~~p~y~~ 265 (513)
+...++.|- .+...+|.+|++.|+.|+||||....++.. +...+....+|.+|+||.-- |+.
T Consensus 82 ----------eL~kl~dp~~~~~~~~K~kpsVimfVGLqG~GKTTtc~KlA~y--~kkkG~K~~LvcaDTFRagA--fDQ 147 (483)
T KOG0780|consen 82 ----------ELVKLLDPGKSALQPKKGKPSVIMFVGLQGSGKTTTCTKLAYY--YKKKGYKVALVCADTFRAGA--FDQ 147 (483)
T ss_pred ----------HHHHHhCCCCcccccccCCCcEEEEEeccCCCcceeHHHHHHH--HHhcCCceeEEeecccccch--HHH
Confidence 112233332 233578999999999999999998888764 44455677899999998410 111
Q ss_pred hhccccC--chhhHHHHHhHhHHHHHHHHHHHHHHCCCcEE-EECcCCChHH
Q 044777 266 LSSRSHV--DMLQTAELVHQSSTDAASSLLVTALNEGRDVI-MDGTLSWVPF 314 (513)
Q Consensus 266 l~~~G~~--Dp~qaae~v~~eAtrlA~~li~~aL~~GrsVI-lDtTlS~~~~ 314 (513)
+...... -|+ ...++......+|.+-++..-++++++| +||+-++..-
T Consensus 148 LkqnA~k~~iP~-ygsyte~dpv~ia~egv~~fKke~fdvIIvDTSGRh~qe 198 (483)
T KOG0780|consen 148 LKQNATKARVPF-YGSYTEADPVKIASEGVDRFKKENFDVIIVDTSGRHKQE 198 (483)
T ss_pred HHHHhHhhCCee-EecccccchHHHHHHHHHHHHhcCCcEEEEeCCCchhhh
Confidence 1110000 000 0111222234677778889999999765 5676666544
No 82
>PLN02674 adenylate kinase
Probab=98.26 E-value=1.2e-05 Score=80.62 Aligned_cols=118 Identities=19% Similarity=0.170 Sum_probs=70.7
Q ss_pred cEEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEeccccc-ccchhh-------hhhhhccccCchhhHHHHHhHhHH
Q 044777 215 PVLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADAF-KESDVI-------YRALSSRSHVDMLQTAELVHQSST 286 (513)
Q Consensus 215 P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDef-R~~~p~-------y~~l~~~G~~Dp~qaae~v~~eAt 286 (513)
+.-|++.|+|||||||.++.|++. .++++|+++++ |+.... .......|. ++..
T Consensus 31 ~~~i~l~G~PGsGKgT~a~~La~~-------~~~~his~GdllR~~i~~~s~~g~~i~~~~~~G~--------lvpd--- 92 (244)
T PLN02674 31 DKRLILIGPPGSGKGTQSPIIKDE-------YCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGE--------LVSD--- 92 (244)
T ss_pred CceEEEECCCCCCHHHHHHHHHHH-------cCCcEEchhHHHHHHHhccChhhHHHHHHHHcCC--------ccCH---
Confidence 445788999999999999999997 47889977655 433210 000011111 1111
Q ss_pred HHHHHHHHHHHHC---CCcEEEECcCCChHHHHHHHHHHhhhhhcccccccccccccCCccccchhhhhhhhhhhhcccC
Q 044777 287 DAASSLLVTALNE---GRDVIMDGTLSWVPFVVQTITMARNVHRHRYRMGVGYKKAEDGTVIENYWDRIGEREQAQDGKM 363 (513)
Q Consensus 287 rlA~~li~~aL~~---GrsVIlDtTlS~~~~~~qii~~Ar~~h~~~y~~g~GYkv~~~g~~~e~Yw~~v~~a~~~~~~~~ 363 (513)
.+...++...+.+ +..||+|+-=++....+.+.++..
T Consensus 93 ~iv~~lv~~~l~~~~~~~g~ilDGfPRt~~Qa~~l~~~l~---------------------------------------- 132 (244)
T PLN02674 93 DLVVGIIDEAMKKPSCQKGFILDGFPRTVVQAQKLDEMLA---------------------------------------- 132 (244)
T ss_pred HHHHHHHHHHHhCcCcCCcEEEeCCCCCHHHHHHHHHHHH----------------------------------------
Confidence 2333455555543 457999998887655544433221
Q ss_pred CCCeEEEE-EEEecChHHHHHHHHHHHH
Q 044777 364 RKPYRIEL-VGVVCDAYLAVVRGIRRAI 390 (513)
Q Consensus 364 ~~gYrI~L-v~V~~dpelAv~Rv~~Rv~ 390 (513)
..|..+.+ +.+.+|.+..++|...|.+
T Consensus 133 ~~~~~~d~vi~l~v~~~~l~~Rl~gR~~ 160 (244)
T PLN02674 133 KQGAKIDKVLNFAIDDAILEERITGRWI 160 (244)
T ss_pred hcCCCCCEEEEEECCHHHHHHHHhcccc
Confidence 12223333 4556899999999998864
No 83
>cd02022 DPCK Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.24) catalyzes the phosphorylation of dephosphocoenzyme A (dCoA) to yield CoA, which is the final step in CoA biosynthesis.
Probab=98.25 E-value=8.3e-06 Score=76.91 Aligned_cols=34 Identities=38% Similarity=0.551 Sum_probs=29.0
Q ss_pred EEEEecCCCCchHHHHHHHhcCcccccCCCCeEEeccccccc
Q 044777 217 LLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADAFKE 258 (513)
Q Consensus 217 LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDefR~ 258 (513)
+|.|.|++||||||+++.+... ++.+|++|.+..
T Consensus 1 ii~itG~~gsGKst~~~~l~~~--------g~~~i~~D~~~~ 34 (179)
T cd02022 1 IIGLTGGIGSGKSTVAKLLKEL--------GIPVIDADKIAH 34 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHC--------CCCEEecCHHHH
Confidence 4789999999999999999773 567999999853
No 84
>PRK13808 adenylate kinase; Provisional
Probab=98.25 E-value=1.5e-05 Score=83.39 Aligned_cols=32 Identities=25% Similarity=0.381 Sum_probs=27.6
Q ss_pred EEEecCCCCchHHHHHHHhcCcccccCCCCeEEeccccc
Q 044777 218 LFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADAF 256 (513)
Q Consensus 218 ILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDef 256 (513)
|+|.|+|||||||++..|.+. .++++|+.|++
T Consensus 3 Iiv~GpPGSGK~T~a~~LA~~-------ygl~~is~gdl 34 (333)
T PRK13808 3 LILLGPPGAGKGTQAQRLVQQ-------YGIVQLSTGDM 34 (333)
T ss_pred EEEECCCCCCHHHHHHHHHHH-------hCCceecccHH
Confidence 678999999999999999987 47789987654
No 85
>TIGR00041 DTMP_kinase thymidylate kinase. Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.
Probab=98.25 E-value=0.00012 Score=68.73 Aligned_cols=24 Identities=29% Similarity=0.331 Sum_probs=22.2
Q ss_pred cEEEEEecCCCCchHHHHHHHhcC
Q 044777 215 PVLLFMGGGMGAGKSTVLKDILKE 238 (513)
Q Consensus 215 P~LILmaG~pGAGKSTla~~Ll~~ 238 (513)
..+|++-|++||||||+++.|.+.
T Consensus 3 g~~IvieG~~GsGKsT~~~~L~~~ 26 (195)
T TIGR00041 3 GMFIVIEGIDGAGKTTQANLLKKL 26 (195)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHH
Confidence 578999999999999999999886
No 86
>PRK05480 uridine/cytidine kinase; Provisional
Probab=98.24 E-value=1.1e-05 Score=77.35 Aligned_cols=41 Identities=32% Similarity=0.616 Sum_probs=34.3
Q ss_pred CCcEEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEecccccc
Q 044777 213 RSPVLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADAFK 257 (513)
Q Consensus 213 ~~P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDefR 257 (513)
.+|.+|.|+|++||||||+++.|... + .+.++.+|+.|.+-
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~~--l--~~~~~~~i~~D~~~ 44 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYEE--L--GDESIAVIPQDSYY 44 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH--h--CCCceEEEeCCccc
Confidence 47899999999999999999999986 3 23567788999874
No 87
>PRK08233 hypothetical protein; Provisional
Probab=98.24 E-value=5.1e-05 Score=70.03 Aligned_cols=25 Identities=16% Similarity=0.352 Sum_probs=23.1
Q ss_pred CcEEEEEecCCCCchHHHHHHHhcC
Q 044777 214 SPVLLFMGGGMGAGKSTVLKDILKE 238 (513)
Q Consensus 214 ~P~LILmaG~pGAGKSTla~~Ll~~ 238 (513)
++.+|.|.|+|||||||+++.|++.
T Consensus 2 ~~~iI~I~G~~GsGKtTla~~L~~~ 26 (182)
T PRK08233 2 KTKIITIAAVSGGGKTTLTERLTHK 26 (182)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhh
Confidence 4689999999999999999999987
No 88
>PRK04040 adenylate kinase; Provisional
Probab=98.24 E-value=1.4e-05 Score=76.80 Aligned_cols=37 Identities=22% Similarity=0.334 Sum_probs=30.5
Q ss_pred cEEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEeccccc
Q 044777 215 PVLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADAF 256 (513)
Q Consensus 215 P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDef 256 (513)
|.++++.|+|||||||+++.+.+. ++ .+..+++.+++
T Consensus 2 ~~~i~v~G~pG~GKtt~~~~l~~~--l~---~~~~~~~~g~~ 38 (188)
T PRK04040 2 MKVVVVTGVPGVGKTTVLNKALEK--LK---EDYKIVNFGDV 38 (188)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHH--hc---cCCeEEecchH
Confidence 679999999999999999999887 21 15667887776
No 89
>COG3265 GntK Gluconate kinase [Carbohydrate transport and metabolism]
Probab=98.23 E-value=1.1e-05 Score=75.95 Aligned_cols=118 Identities=17% Similarity=0.096 Sum_probs=77.0
Q ss_pred cCCCCchHHHHHHHhcCcccccCCCCeEEecccccccchhhh--hhhhccccCchhhHHHHHhHhHHHHHHHH---HHHH
Q 044777 222 GGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADAFKESDVIY--RALSSRSHVDMLQTAELVHQSSTDAASSL---LVTA 296 (513)
Q Consensus 222 G~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDefR~~~p~y--~~l~~~G~~Dp~qaae~v~~eAtrlA~~l---i~~a 296 (513)
|+.||||||++..|+.. .++.+|++|++ ||.- ..+.+ |.+ +...+ ---|...+ +...
T Consensus 2 GVsG~GKStvg~~lA~~-------lg~~fidGDdl---Hp~aNi~KM~~-GiP--L~DdD-----R~pWL~~l~~~~~~~ 63 (161)
T COG3265 2 GVSGSGKSTVGSALAER-------LGAKFIDGDDL---HPPANIEKMSA-GIP--LNDDD-----RWPWLEALGDAAASL 63 (161)
T ss_pred CCCccCHHHHHHHHHHH-------cCCceeccccc---CCHHHHHHHhC-CCC--CCcch-----hhHHHHHHHHHHHHh
Confidence 89999999999999998 57889999998 3321 11222 443 11000 00122222 2333
Q ss_pred HHCCCcEEEECcCCChHHHHHHHHHHhhhhhcccccccccccccCCccccchhhhhhhhhhhhcccCCCCeEEEEEEEec
Q 044777 297 LNEGRDVIMDGTLSWVPFVVQTITMARNVHRHRYRMGVGYKKAEDGTVIENYWDRIGEREQAQDGKMRKPYRIELVGVVC 376 (513)
Q Consensus 297 L~~GrsVIlDtTlS~~~~~~qii~~Ar~~h~~~y~~g~GYkv~~~g~~~e~Yw~~v~~a~~~~~~~~~~gYrI~Lv~V~~ 376 (513)
.+.|.++|+-++=-.++|++.+.. ..|- +.++|+..
T Consensus 64 ~~~~~~~vi~CSALKr~YRD~LR~-------------------------------------------~~~~-~~Fv~L~g 99 (161)
T COG3265 64 AQKNKHVVIACSALKRSYRDLLRE-------------------------------------------ANPG-LRFVYLDG 99 (161)
T ss_pred hcCCCceEEecHHHHHHHHHHHhc-------------------------------------------cCCC-eEEEEecC
Confidence 446777888777666666654422 1111 67888889
Q ss_pred ChHHHHHHHHHHHHhcCCcCchhHHHHH
Q 044777 377 DAYLAVVRGIRRAIMCRRAVRVKSQLKS 404 (513)
Q Consensus 377 dpelAv~Rv~~Rv~~gGh~VP~~~il~r 404 (513)
+.++...|...| .||..|.+.+...
T Consensus 100 ~~~~i~~Rm~~R---~gHFM~~~ll~SQ 124 (161)
T COG3265 100 DFDLILERMKAR---KGHFMPASLLDSQ 124 (161)
T ss_pred CHHHHHHHHHhc---ccCCCCHHHHHHH
Confidence 999999999988 7999999877643
No 90
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.22 E-value=3.3e-05 Score=88.33 Aligned_cols=146 Identities=12% Similarity=0.074 Sum_probs=81.8
Q ss_pred hHHHHHHHHHHhhccCccchhhhhhcCCCCcchHHHHHHHHHHHHhhhhhhhccchhhHHHHHhhcCCCchhhhhHHHHH
Q 044777 81 PQLCKLAAEYIRKSEGCEDDIYTFFSSEPAADSLFIKLVEEFERCILSYFAFHWSHADLMISQVLNSDAEPKKKLKHIVM 160 (513)
Q Consensus 81 ~~~~~l~~~~l~~s~~~~~~i~~~~~~~~~~~~l~~~~~eele~~~~~~~~~~~~~~~~li~~~l~~~~~~~~~~~~~v~ 160 (513)
+.+.+|..++-+..+-+.+.+..+|..... ......+.++|++ .||.++++.+.. ..++
T Consensus 90 ~~~~~l~~El~~lk~~L~~~l~~~~~~~~~-~~~~~~~~~~l~~--------------~Ll~~dv~~~la------~~l~ 148 (767)
T PRK14723 90 GAIGDLRGELQSMRGMLERQLAGLLWAAGE-VAGRDPLRASLFR--------------WLLGAGFSGQLA------RALL 148 (767)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhhhccc-cccChHHHHHHHH--------------HHHHCCCCHHHH------HHHH
Confidence 566777776544444444445555521110 1122445578888 888888886655 6666
Q ss_pred HHHHhHHHHhhhhhhHHHHHHHHHHHHHHHhcCCCCCCcccchhcccccCCCCCcEEEEEecCCCCchHHHHHHHhcCcc
Q 044777 161 QATREQRFERVTKNLKVARVFTTLVEEMKAMGLAPNDDSQCTEVMAPVALGDRSPVLLFMGGGMGAGKSTVLKDILKEPF 240 (513)
Q Consensus 161 ~a~r~~rf~r~~~~~~v~r~~~~~ve~~~~~~~~~~~~~~~~~vl~p~~~~~~~P~LILmaG~pGAGKSTla~~Ll~~~f 240 (513)
+.+.+. .+...+...+.+.+.++..+ +.........+.++++.||||+||||++..|+.. +
T Consensus 149 ~~l~~~-----~~~~~~~~~l~~~L~~~l~i-------------l~~~~~~~~~g~Vi~lVGpnGvGKTTTiaKLA~~-~ 209 (767)
T PRK14723 149 ERLPVG-----YDRPAAMAWIRNELATHLPV-------------LRDEDALLAQGGVLALVGPTGVGKTTTTAKLAAR-C 209 (767)
T ss_pred HHHHhc-----CCHHHHHHHHHHHHHHHhhh-------------ccCCCcccCCCeEEEEECCCCCcHHHHHHHHHhh-H
Confidence 666543 12223344444333222111 1111111124689999999999999999999875 1
Q ss_pred cccCC-CCeEEecccccc----cchhhhhhh
Q 044777 241 WAGAA-GNAVVIEADAFK----ESDVIYRAL 266 (513)
Q Consensus 241 ~~~~~-~~aVvInaDefR----~~~p~y~~l 266 (513)
....+ ..+.+|..|.+| +++..|...
T Consensus 210 ~~~~G~kkV~lit~Dt~RigA~eQL~~~a~~ 240 (767)
T PRK14723 210 VAREGADQLALLTTDSFRIGALEQLRIYGRI 240 (767)
T ss_pred HHHcCCCeEEEecCcccchHHHHHHHHHHHh
Confidence 12233 356788999998 345455433
No 91
>PRK13973 thymidylate kinase; Provisional
Probab=98.21 E-value=5.7e-05 Score=73.35 Aligned_cols=86 Identities=22% Similarity=0.249 Sum_probs=48.9
Q ss_pred CcEEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEe-cc------cccccchhhhhhhhccccCchhhHHHHHhHhHH
Q 044777 214 SPVLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVI-EA------DAFKESDVIYRALSSRSHVDMLQTAELVHQSST 286 (513)
Q Consensus 214 ~P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvI-na------DefR~~~p~y~~l~~~G~~Dp~qaae~v~~eAt 286 (513)
++.+|++-|+.||||||.++.|.+. +...+..++.. .| +.+|+.+..- .. ...+|...+-+ .++
T Consensus 2 ~g~~IviEG~dGsGKtTq~~~l~~~--l~~~g~~~~~~~~p~~~~~g~~ir~~l~~~---~~-~~~~~~~~~ll---~~a 72 (213)
T PRK13973 2 RGRFITFEGGEGAGKSTQIRLLAER--LRAAGYDVLVTREPGGSPGAEAIRHVLLSG---AA-ELYGPRMEALL---FAA 72 (213)
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHH--HHHCCCeEEEEECCCCCchHHHHHHHHcCC---Cc-cCCCHHHHHHH---HHH
Confidence 3679999999999999999999886 43334444444 22 3333221100 00 01133221111 222
Q ss_pred H---HHHHHHHHHHHCCCcEEEECc
Q 044777 287 D---AASSLLVTALNEGRDVIMDGT 308 (513)
Q Consensus 287 r---lA~~li~~aL~~GrsVIlDtT 308 (513)
. .....+..++++|..||.|--
T Consensus 73 ~r~~~~~~~i~~~l~~g~~Vi~DRy 97 (213)
T PRK13973 73 ARDDHVEEVIRPALARGKIVLCDRF 97 (213)
T ss_pred HHHHHHHHHHHHHHHCCCEEEEcch
Confidence 2 334457789999999998853
No 92
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=98.21 E-value=1.4e-05 Score=87.35 Aligned_cols=130 Identities=8% Similarity=0.094 Sum_probs=75.5
Q ss_pred HHHHHHHhhccCccchhhhhhcC-CCCcchHHHHHHHHHHHHhhhhhhhccchhhHHHHHhhcCCCchhhhhHHHHHHHH
Q 044777 85 KLAAEYIRKSEGCEDDIYTFFSS-EPAADSLFIKLVEEFERCILSYFAFHWSHADLMISQVLNSDAEPKKKLKHIVMQAT 163 (513)
Q Consensus 85 ~l~~~~l~~s~~~~~~i~~~~~~-~~~~~~l~~~~~eele~~~~~~~~~~~~~~~~li~~~l~~~~~~~~~~~~~v~~a~ 163 (513)
.|..++-...+.+.+.+..+|.+ .+..+ ...+||++ .||+++++.+.. ..|++.+
T Consensus 167 ~l~~El~~lr~~l~~~~~~l~~~~~~~~~----p~~~~l~~--------------~Ll~~dv~~~la------~~l~~~l 222 (484)
T PRK06995 167 TVMQELRSLRGMLEEQLASLAWGERQRRD----PVRAALLK--------------HLLAAGFSAQLV------RMLVDNL 222 (484)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccccccc----HHHHHHHH--------------HHHHCCCCHHHH------HHHHHHH
Confidence 34444333333344455555533 33233 44488888 888888887666 7777777
Q ss_pred HhHHHHhhhhhhHHHHHHHHHHHHHHHhcCCCCCCcccchhcccccCCCCCcEEEEEecCCCCchHHHHHHHhcCccccc
Q 044777 164 REQRFERVTKNLKVARVFTTLVEEMKAMGLAPNDDSQCTEVMAPVALGDRSPVLLFMGGGMGAGKSTVLKDILKEPFWAG 243 (513)
Q Consensus 164 r~~rf~r~~~~~~v~r~~~~~ve~~~~~~~~~~~~~~~~~vl~p~~~~~~~P~LILmaG~pGAGKSTla~~Ll~~~f~~~ 243 (513)
++.. ....+.+.+...+++.... +.+......++.++++.||||+||||++..|+.. +...
T Consensus 223 ~~~~-----~~~~~~~~l~~~l~~~l~~-------------~~~~~~~~~~g~Vi~LvGpnGvGKTTTiaKLA~~-~~~~ 283 (484)
T PRK06995 223 PEGD-----DAEAALDWVQSALAKNLPV-------------LDSEDALLDRGGVFALMGPTGVGKTTTTAKLAAR-CVMR 283 (484)
T ss_pred Hhhh-----chhHHHHHHHHHHHHHHhh-------------ccCccccccCCcEEEEECCCCccHHHHHHHHHHH-HHHh
Confidence 6542 1123445555555432211 0011011134689999999999999999999864 1112
Q ss_pred CCC-CeEEecccccc
Q 044777 244 AAG-NAVVIEADAFK 257 (513)
Q Consensus 244 ~~~-~aVvInaDefR 257 (513)
.+. .+.+|+.|.+|
T Consensus 284 ~G~~kV~LI~~Dt~R 298 (484)
T PRK06995 284 HGASKVALLTTDSYR 298 (484)
T ss_pred cCCCeEEEEeCCccc
Confidence 222 56788999986
No 93
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=98.20 E-value=8.7e-05 Score=80.02 Aligned_cols=44 Identities=16% Similarity=0.367 Sum_probs=35.1
Q ss_pred CCcEEEEEecCCCCchHHHHHHHhcCccc-ccCCCCeEEeccccccc
Q 044777 213 RSPVLLFMGGGMGAGKSTVLKDILKEPFW-AGAAGNAVVIEADAFKE 258 (513)
Q Consensus 213 ~~P~LILmaG~pGAGKSTla~~Ll~~~f~-~~~~~~aVvInaDefR~ 258 (513)
.+|.++++.|++||||||++..|+.. | ...+..+.+++.|.+|.
T Consensus 221 ~~~~vi~lvGptGvGKTTtaaKLA~~--~~~~~G~~V~Lit~Dt~R~ 265 (432)
T PRK12724 221 NQRKVVFFVGPTGSGKTTSIAKLAAK--YFLHMGKSVSLYTTDNYRI 265 (432)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH--HHHhcCCeEEEecccchhh
Confidence 35788999999999999999999875 3 22344677899999884
No 94
>PRK03839 putative kinase; Provisional
Probab=98.20 E-value=3e-06 Score=79.27 Aligned_cols=34 Identities=24% Similarity=0.343 Sum_probs=29.6
Q ss_pred EEEEecCCCCchHHHHHHHhcCcccccCCCCeEEecccccc
Q 044777 217 LLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADAFK 257 (513)
Q Consensus 217 LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDefR 257 (513)
.|++.|+|||||||+++.|++. .++.+++.|++-
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~-------~~~~~id~d~~~ 35 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEK-------LGYEYVDLTEFA 35 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHH-------hCCcEEehhhhh
Confidence 4789999999999999999997 467899988773
No 95
>PRK14731 coaE dephospho-CoA kinase; Provisional
Probab=98.19 E-value=2e-05 Score=76.36 Aligned_cols=37 Identities=35% Similarity=0.513 Sum_probs=31.8
Q ss_pred CCcEEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEecccccc
Q 044777 213 RSPVLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADAFK 257 (513)
Q Consensus 213 ~~P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDefR 257 (513)
+.|.+|-+.|++||||||+++.|... ++.++|+|.+.
T Consensus 3 ~~~~~igitG~igsGKSt~~~~l~~~--------g~~v~d~D~i~ 39 (208)
T PRK14731 3 SLPFLVGVTGGIGSGKSTVCRFLAEM--------GCELFEADRVA 39 (208)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHC--------CCeEEeccHHH
Confidence 45789999999999999999998864 66799999875
No 96
>PRK13948 shikimate kinase; Provisional
Probab=98.19 E-value=2.5e-05 Score=74.93 Aligned_cols=40 Identities=25% Similarity=0.331 Sum_probs=34.1
Q ss_pred CCcEEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEecccccccc
Q 044777 213 RSPVLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADAFKES 259 (513)
Q Consensus 213 ~~P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDefR~~ 259 (513)
..|..|++.|.|||||||+++.|++. .+..+||+|.+.++
T Consensus 8 ~~~~~I~LiG~~GsGKSTvg~~La~~-------lg~~~iD~D~~ie~ 47 (182)
T PRK13948 8 RPVTWVALAGFMGTGKSRIGWELSRA-------LMLHFIDTDRYIER 47 (182)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHH-------cCCCEEECCHHHHH
Confidence 36789999999999999999999987 46678999977543
No 97
>PRK14734 coaE dephospho-CoA kinase; Provisional
Probab=98.19 E-value=1.9e-05 Score=76.39 Aligned_cols=52 Identities=15% Similarity=0.051 Sum_probs=36.1
Q ss_pred EEEEEecChHHHHHHHHHHHHhcCCcCchhHHHHHHHHHHHHHHHhhcccceEEEEecCC
Q 044777 370 ELVGVVCDAYLAVVRGIRRAIMCRRAVRVKSQLKSHKRFANAFLTYCQLVDSARLYSTNA 429 (513)
Q Consensus 370 ~Lv~V~~dpelAv~Rv~~Rv~~gGh~VP~~~il~r~~rf~~nf~~~~~lvD~a~lyDNs~ 429 (513)
.+++|.||++..++|...| ++.+.+...++..+...... ....+|. +.||++
T Consensus 128 ~vi~V~a~~e~ri~Rl~~R-----~g~s~e~~~~ri~~Q~~~~~-k~~~ad~--vI~N~g 179 (200)
T PRK14734 128 LVVVVDVDVEERVRRLVEK-----RGLDEDDARRRIAAQIPDDV-RLKAADI--VVDNNG 179 (200)
T ss_pred eEEEEECCHHHHHHHHHHc-----CCCCHHHHHHHHHhcCCHHH-HHHhCCE--EEECcC
Confidence 3577889999999998888 34777777777666665533 3455674 456665
No 98
>PRK08356 hypothetical protein; Provisional
Probab=98.18 E-value=4.3e-05 Score=72.93 Aligned_cols=22 Identities=32% Similarity=0.369 Sum_probs=19.6
Q ss_pred EEEEEecCCCCchHHHHHHHhc
Q 044777 216 VLLFMGGGMGAGKSTVLKDILK 237 (513)
Q Consensus 216 ~LILmaG~pGAGKSTla~~Ll~ 237 (513)
.+|+++|+|||||||+++.|.+
T Consensus 6 ~~i~~~G~~gsGK~t~a~~l~~ 27 (195)
T PRK08356 6 MIVGVVGKIAAGKTTVAKFFEE 27 (195)
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999999953
No 99
>PRK00300 gmk guanylate kinase; Provisional
Probab=98.18 E-value=7.7e-06 Score=77.63 Aligned_cols=25 Identities=40% Similarity=0.695 Sum_probs=22.8
Q ss_pred CcEEEEEecCCCCchHHHHHHHhcC
Q 044777 214 SPVLLFMGGGMGAGKSTVLKDILKE 238 (513)
Q Consensus 214 ~P~LILmaG~pGAGKSTla~~Ll~~ 238 (513)
++.+++|.|++||||||+++.|+..
T Consensus 4 ~g~~i~i~G~sGsGKstl~~~l~~~ 28 (205)
T PRK00300 4 RGLLIVLSGPSGAGKSTLVKALLER 28 (205)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhh
Confidence 5679999999999999999999876
No 100
>PRK00625 shikimate kinase; Provisional
Probab=98.17 E-value=4.3e-05 Score=72.66 Aligned_cols=34 Identities=21% Similarity=0.220 Sum_probs=29.8
Q ss_pred EEEEecCCCCchHHHHHHHhcCcccccCCCCeEEecccccc
Q 044777 217 LLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADAFK 257 (513)
Q Consensus 217 LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDefR 257 (513)
.|++.|.|||||||+++.|++. .++.+|+.|.+-
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~-------l~~~~id~D~~I 35 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKF-------LSLPFFDTDDLI 35 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHH-------hCCCEEEhhHHH
Confidence 3789999999999999999987 467899999763
No 101
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=98.17 E-value=1.5e-05 Score=75.98 Aligned_cols=79 Identities=18% Similarity=0.319 Sum_probs=46.7
Q ss_pred EEEEecCCCCchHHHHHHHhcCcccccCCCCeEEecc-cccccchhhhhhhhc-cccCchhhHHHHH--hHhHHHHHHHH
Q 044777 217 LLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEA-DAFKESDVIYRALSS-RSHVDMLQTAELV--HQSSTDAASSL 292 (513)
Q Consensus 217 LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvIna-DefR~~~p~y~~l~~-~G~~Dp~qaae~v--~~eAtrlA~~l 292 (513)
.|.++|+|||||||+++.|+++ .+..+|++ +.||+. .. .|. +..++..+. +++.-....+
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~-------~gl~~vsaG~iFR~~-------A~e~gm-sl~ef~~~AE~~p~iD~~iD~- 65 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEH-------LGLKLVSAGTIFREM-------ARERGM-SLEEFSRYAEEDPEIDKEIDR- 65 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHH-------hCCceeeccHHHHHH-------HHHcCC-CHHHHHHHHhcCchhhHHHHH-
Confidence 5789999999999999999998 56778875 455532 21 111 111111211 1111122233
Q ss_pred HHHHHHCCCcEEEECcCCC
Q 044777 293 LVTALNEGRDVIMDGTLSW 311 (513)
Q Consensus 293 i~~aL~~GrsVIlDtTlS~ 311 (513)
.+..+.+..|+|+|+-|+.
T Consensus 66 rq~e~a~~~nvVlegrLA~ 84 (179)
T COG1102 66 RQKELAKEGNVVLEGRLAG 84 (179)
T ss_pred HHHHHHHcCCeEEhhhhHH
Confidence 3333444779999998865
No 102
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=98.16 E-value=3.6e-05 Score=71.70 Aligned_cols=23 Identities=35% Similarity=0.495 Sum_probs=20.9
Q ss_pred EEEEEecCCCCchHHHHHHHhcC
Q 044777 216 VLLFMGGGMGAGKSTVLKDILKE 238 (513)
Q Consensus 216 ~LILmaG~pGAGKSTla~~Ll~~ 238 (513)
.+++|.|+|||||||+++.|+..
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~ 24 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARAR 24 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 47899999999999999999875
No 103
>PRK14738 gmk guanylate kinase; Provisional
Probab=98.15 E-value=2.3e-05 Score=75.78 Aligned_cols=27 Identities=30% Similarity=0.578 Sum_probs=24.0
Q ss_pred CCCcEEEEEecCCCCchHHHHHHHhcC
Q 044777 212 DRSPVLLFMGGGMGAGKSTVLKDILKE 238 (513)
Q Consensus 212 ~~~P~LILmaG~pGAGKSTla~~Ll~~ 238 (513)
..+|.++++.||+||||||+++.|.+.
T Consensus 10 ~~~~~~ivi~GpsG~GK~tl~~~L~~~ 36 (206)
T PRK14738 10 PAKPLLVVISGPSGVGKDAVLARMRER 36 (206)
T ss_pred CCCCeEEEEECcCCCCHHHHHHHHHhc
Confidence 347899999999999999999999764
No 104
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=98.14 E-value=7.1e-05 Score=69.20 Aligned_cols=35 Identities=26% Similarity=0.391 Sum_probs=30.1
Q ss_pred EEEEecCCCCchHHHHHHHhcCcccccCCCCeEEeccccccc
Q 044777 217 LLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADAFKE 258 (513)
Q Consensus 217 LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDefR~ 258 (513)
.+++.|++||||||+++.|++. .++.+++.|.+.+
T Consensus 4 ~i~~~G~~GsGKst~~~~la~~-------lg~~~~d~D~~~~ 38 (171)
T PRK03731 4 PLFLVGARGCGKTTVGMALAQA-------LGYRFVDTDQWLQ 38 (171)
T ss_pred eEEEECCCCCCHHHHHHHHHHH-------hCCCEEEccHHHH
Confidence 4777899999999999999986 4667999999854
No 105
>PRK07667 uridine kinase; Provisional
Probab=98.13 E-value=2.9e-05 Score=74.26 Aligned_cols=42 Identities=14% Similarity=0.220 Sum_probs=33.9
Q ss_pred CCcEEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEeccccc
Q 044777 213 RSPVLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADAF 256 (513)
Q Consensus 213 ~~P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDef 256 (513)
..+.+|.|+|++||||||+++.|... ....+.++.+|+.|.|
T Consensus 15 ~~~~iIgI~G~~gsGKStla~~L~~~--l~~~~~~~~~i~~Dd~ 56 (193)
T PRK07667 15 ENRFILGIDGLSRSGKTTFVANLKEN--MKQEGIPFHIFHIDDY 56 (193)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH--HHhCCCcEEEEEcCcc
Confidence 35589999999999999999999875 2333456788999987
No 106
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=98.11 E-value=1.8e-05 Score=76.70 Aligned_cols=87 Identities=28% Similarity=0.369 Sum_probs=54.6
Q ss_pred CcEEEEEecCCCCchHHHHHHHhcCccc--------------ccCCCCeEEecccccccchhhhhhhhccccCchhhHHH
Q 044777 214 SPVLLFMGGGMGAGKSTVLKDILKEPFW--------------AGAAGNAVVIEADAFKESDVIYRALSSRSHVDMLQTAE 279 (513)
Q Consensus 214 ~P~LILmaG~pGAGKSTla~~Ll~~~f~--------------~~~~~~aVvInaDefR~~~p~y~~l~~~G~~Dp~qaae 279 (513)
++.++++.||+|+||||+.+.|++..-+ +.+|-++.+|+.|+|.... ..+.+ .++++
T Consensus 3 ~G~l~vlsgPSG~GKsTl~k~L~~~~~l~~SVS~TTR~pR~gEv~G~dY~Fvs~~EF~~~i-------~~~~f--LE~a~ 73 (191)
T COG0194 3 KGLLIVLSGPSGVGKSTLVKALLEDDKLRFSVSATTRKPRPGEVDGVDYFFVTEEEFEELI-------ERDEF--LEWAE 73 (191)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhhcCeEEEEEeccCCCCCCCcCCceeEeCCHHHHHHHH-------hcCCc--EEEEE
Confidence 6789999999999999999999865211 2344456788888885422 11111 01111
Q ss_pred HH-hHhHHHHHHHHHHHHHHCCCcEEEECcCCC
Q 044777 280 LV-HQSSTDAASSLLVTALNEGRDVIMDGTLSW 311 (513)
Q Consensus 280 ~v-~~eAtrlA~~li~~aL~~GrsVIlDtTlS~ 311 (513)
+. +...+- ..-++.++++|.+||+|-.+-+
T Consensus 74 ~~gnyYGT~--~~~ve~~~~~G~~vildId~qG 104 (191)
T COG0194 74 YHGNYYGTS--REPVEQALAEGKDVILDIDVQG 104 (191)
T ss_pred EcCCcccCc--HHHHHHHHhcCCeEEEEEehHH
Confidence 10 001111 1336788999999999988755
No 107
>KOG3354 consensus Gluconate kinase [Carbohydrate transport and metabolism]
Probab=98.11 E-value=5.3e-05 Score=72.04 Aligned_cols=141 Identities=15% Similarity=0.084 Sum_probs=83.4
Q ss_pred CCCcEEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEecccccccchhhhh-hhhccccC--chhhHHHHHhHhHHHH
Q 044777 212 DRSPVLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADAFKESDVIYR-ALSSRSHV--DMLQTAELVHQSSTDA 288 (513)
Q Consensus 212 ~~~P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDefR~~~p~y~-~l~~~G~~--Dp~qaae~v~~eAtrl 288 (513)
..-|-++++.|+.||||||+++.|.++ .+.-++++|+| ||.-. +-..+|.. |--++ .+.+ .+
T Consensus 9 ~~~k~~i~vmGvsGsGKSTigk~L~~~-------l~~~F~dgDd~---Hp~~NveKM~~GipLnD~DR~-pWL~----~i 73 (191)
T KOG3354|consen 9 GPFKYVIVVMGVSGSGKSTIGKALSEE-------LGLKFIDGDDL---HPPANVEKMTQGIPLNDDDRW-PWLK----KI 73 (191)
T ss_pred CCCceeEEEEecCCCChhhHHHHHHHH-------hCCcccccccC---CCHHHHHHHhcCCCCCccccc-HHHH----HH
Confidence 445678999999999999999999987 45669999999 33211 11122433 21011 1111 12
Q ss_pred HHHHHHHHHHCCCcEEEECcCCChHHHHHHHHHHhhhhhcccccccccccccCCccccchhhhhhhhhhhhcccCCCCeE
Q 044777 289 ASSLLVTALNEGRDVIMDGTLSWVPFVVQTITMARNVHRHRYRMGVGYKKAEDGTVIENYWDRIGEREQAQDGKMRKPYR 368 (513)
Q Consensus 289 A~~li~~aL~~GrsVIlDtTlS~~~~~~qii~~Ar~~h~~~y~~g~GYkv~~~g~~~e~Yw~~v~~a~~~~~~~~~~gYr 368 (513)
...++ ..+..|+-||+-++--.+.|++-+-.... +|. +.+..--.
T Consensus 74 ~~~~~-~~l~~~q~vVlACSaLKk~YRdILr~sl~-----------------~gk-----------------~~~~~~~~ 118 (191)
T KOG3354|consen 74 AVELR-KALASGQGVVLACSALKKKYRDILRHSLK-----------------DGK-----------------PGKCPESQ 118 (191)
T ss_pred HHHHH-HHhhcCCeEEEEhHHHHHHHHHHHHhhcc-----------------cCC-----------------ccCCccce
Confidence 22222 33348999999888777777653322110 110 01222234
Q ss_pred EEEEEEecChHHHHHHHHHHHHhcCCcCchhHHHHHH
Q 044777 369 IELVGVVCDAYLAVVRGIRRAIMCRRAVRVKSQLKSH 405 (513)
Q Consensus 369 I~Lv~V~~dpelAv~Rv~~Rv~~gGh~VP~~~il~r~ 405 (513)
+.+++...+-+.-..|...| -||..|.+.....+
T Consensus 119 l~fi~l~~s~evi~~Rl~~R---~gHFMp~~lleSQf 152 (191)
T KOG3354|consen 119 LHFILLSASFEVILKRLKKR---KGHFMPADLLESQF 152 (191)
T ss_pred EEEeeeeccHHHHHHHHhhc---ccccCCHHHHHHHH
Confidence 44455556888888888877 58999998776433
No 108
>PRK14733 coaE dephospho-CoA kinase; Provisional
Probab=98.09 E-value=2.7e-05 Score=76.19 Aligned_cols=39 Identities=26% Similarity=0.305 Sum_probs=33.3
Q ss_pred CCcEEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEeccccccc
Q 044777 213 RSPVLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADAFKE 258 (513)
Q Consensus 213 ~~P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDefR~ 258 (513)
..|..|-+.|++||||||+++.+.+. .++.++++|.+-.
T Consensus 4 ~~~~~IglTG~iGsGKStv~~~l~~~-------lg~~vidaD~i~~ 42 (204)
T PRK14733 4 INTYPIGITGGIASGKSTATRILKEK-------LNLNVVCADTISR 42 (204)
T ss_pred CceEEEEEECCCCCCHHHHHHHHHHH-------cCCeEEeccHHHH
Confidence 46889999999999999999999865 3567899999853
No 109
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=98.09 E-value=0.0002 Score=73.73 Aligned_cols=37 Identities=22% Similarity=0.108 Sum_probs=30.9
Q ss_pred CcEEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEecccccc
Q 044777 214 SPVLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADAFK 257 (513)
Q Consensus 214 ~P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDefR 257 (513)
++..|++.|+|||||||+++.|++. .+..+|+.|...
T Consensus 132 ~~~~I~l~G~~GsGKStvg~~La~~-------Lg~~~id~D~~i 168 (309)
T PRK08154 132 RRRRIALIGLRGAGKSTLGRMLAAR-------LGVPFVELNREI 168 (309)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHH-------cCCCEEeHHHHH
Confidence 4568999999999999999999987 456688888664
No 110
>PRK14526 adenylate kinase; Provisional
Probab=98.08 E-value=6.2e-05 Score=73.76 Aligned_cols=34 Identities=32% Similarity=0.371 Sum_probs=26.8
Q ss_pred EEEecCCCCchHHHHHHHhcCcccccCCCCeEEeccccc-cc
Q 044777 218 LFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADAF-KE 258 (513)
Q Consensus 218 ILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDef-R~ 258 (513)
+++.|+|||||||+++.|++. .+..+|+++++ |+
T Consensus 3 i~l~G~pGsGKsT~a~~La~~-------~~~~~is~G~llr~ 37 (211)
T PRK14526 3 LVFLGPPGSGKGTIAKILSNE-------LNYYHISTGDLFRE 37 (211)
T ss_pred EEEECCCCCCHHHHHHHHHHH-------hCCceeecChHHHH
Confidence 678999999999999999876 35667876554 53
No 111
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.07 E-value=7.2e-05 Score=80.27 Aligned_cols=43 Identities=21% Similarity=0.302 Sum_probs=35.7
Q ss_pred CCcEEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEecccccc
Q 044777 213 RSPVLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADAFK 257 (513)
Q Consensus 213 ~~P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDefR 257 (513)
..|..|++.|++|+||||++..|+.. +...+..+.+|++|.+|
T Consensus 239 ~~~~vI~LVGptGvGKTTTiaKLA~~--L~~~GkkVglI~aDt~R 281 (436)
T PRK11889 239 KEVQTIALIGPTGVGKTTTLAKMAWQ--FHGKKKTVGFITTDHSR 281 (436)
T ss_pred cCCcEEEEECCCCCcHHHHHHHHHHH--HHHcCCcEEEEecCCcc
Confidence 45789999999999999999999875 33345567789999998
No 112
>PRK13949 shikimate kinase; Provisional
Probab=98.06 E-value=0.00017 Score=68.04 Aligned_cols=32 Identities=41% Similarity=0.584 Sum_probs=28.6
Q ss_pred EEEecCCCCchHHHHHHHhcCcccccCCCCeEEeccccc
Q 044777 218 LFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADAF 256 (513)
Q Consensus 218 ILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDef 256 (513)
|++.|+|||||||+++.|++. .+..+++.|.+
T Consensus 4 I~liG~~GsGKstl~~~La~~-------l~~~~id~D~~ 35 (169)
T PRK13949 4 IFLVGYMGAGKTTLGKALARE-------LGLSFIDLDFF 35 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHH-------cCCCeecccHH
Confidence 788999999999999999987 46779999976
No 113
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=98.04 E-value=3.2e-05 Score=73.36 Aligned_cols=132 Identities=17% Similarity=0.153 Sum_probs=80.8
Q ss_pred CcEEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEe-cccccccchhhhhhhhccccCchhhHHHHHhHhHHHHHHHH
Q 044777 214 SPVLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVI-EADAFKESDVIYRALSSRSHVDMLQTAELVHQSSTDAASSL 292 (513)
Q Consensus 214 ~P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvI-naDefR~~~p~y~~l~~~G~~Dp~qaae~v~~eAtrlA~~l 292 (513)
....++++|+|||||||+.+.++.. ++ ...+.+.+ +++++...++.+-.+..... +. . .....-...+
T Consensus 24 ~g~~i~I~G~tGSGKTTll~aL~~~--i~-~~~~~i~ied~~E~~~~~~~~~~~~~~~~-~~----~---~~~~~~~~~~ 92 (186)
T cd01130 24 ARKNILISGGTGSGKTTLLNALLAF--IP-PDERIITIEDTAELQLPHPNWVRLVTRPG-NV----E---GSGEVTMADL 92 (186)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhh--cC-CCCCEEEECCccccCCCCCCEEEEEEecC-CC----C---CCCccCHHHH
Confidence 4568999999999999999999875 33 23455555 44454321111101110000 00 0 0001123456
Q ss_pred HHHHHHCCCcEEEECcCCChHHHHHHHHHHhhhhhcccccccccccccCCccccchhhhhhhhhhhhcccCCCCeEEEEE
Q 044777 293 LVTALNEGRDVIMDGTLSWVPFVVQTITMARNVHRHRYRMGVGYKKAEDGTVIENYWDRIGEREQAQDGKMRKPYRIELV 372 (513)
Q Consensus 293 i~~aL~~GrsVIlDtTlS~~~~~~qii~~Ar~~h~~~y~~g~GYkv~~~g~~~e~Yw~~v~~a~~~~~~~~~~gYrI~Lv 372 (513)
+..++..+-++|+-+.+++++-.. +++.+ ..|+...+.
T Consensus 93 l~~~lR~~pd~i~igEir~~ea~~-~~~a~-----------------------------------------~tGh~g~~~ 130 (186)
T cd01130 93 LRSALRMRPDRIIVGEVRGGEALD-LLQAM-----------------------------------------NTGHPGGMT 130 (186)
T ss_pred HHHHhccCCCEEEEEccCcHHHHH-HHHHH-----------------------------------------hcCCCCcee
Confidence 778888999999999999976433 43322 133332345
Q ss_pred EEe-cChHHHHHHHHHHHHhcCCcCch
Q 044777 373 GVV-CDAYLAVVRGIRRAIMCRRAVRV 398 (513)
Q Consensus 373 ~V~-~dpelAv~Rv~~Rv~~gGh~VP~ 398 (513)
-++ .++..++.|...+...+|+.++.
T Consensus 131 T~Ha~s~~~~~~Rl~~~~~~~~~~~~~ 157 (186)
T cd01130 131 TIHANSAEEALTRLELLPSNVPLGRPL 157 (186)
T ss_pred eecCCCHHHHHHHHHHHHhhcCccHHH
Confidence 555 58999999999999999987766
No 114
>PF01121 CoaE: Dephospho-CoA kinase; InterPro: IPR001977 This family contains dephospho-CoA kinases (2.7.1.24 from EC), which catalyzes the final step in CoA biosynthesis, the phosphorylation of the 3'-hydroxyl group of ribose using ATP as a phosphate donor. The crystal structures of a number of the proteins in this entry have been determined, including the structure of the protein from Haemophilus influenzae to 2.0-A resolution in a comlex with ATP. The protein consists of three domains: the nucleotide-binding domain with a five-stranded parallel beta-sheet, the substrate-binding alpha-helical domain, and the lid domain formed by a pair of alpha-helices; the overall topology of the protein resembles the structures of other nucleotide kinases [].; GO: 0004140 dephospho-CoA kinase activity, 0005524 ATP binding, 0015937 coenzyme A biosynthetic process; PDB: 1VHL_A 1N3B_A 1VIY_A 1VHT_B 1T3H_B 1UF9_C 2F6R_A 2GRJ_D 2IF2_C 1JJV_A.
Probab=98.03 E-value=3e-05 Score=74.28 Aligned_cols=33 Identities=39% Similarity=0.554 Sum_probs=28.5
Q ss_pred EEEEecCCCCchHHHHHHHhcCcccccCCCCeEEecccccc
Q 044777 217 LLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADAFK 257 (513)
Q Consensus 217 LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDefR 257 (513)
+|-+.|+.||||||+++.+.+. ++.+||+|.+-
T Consensus 2 iIglTG~igsGKStv~~~l~~~--------G~~vidaD~i~ 34 (180)
T PF01121_consen 2 IIGLTGGIGSGKSTVSKILAEL--------GFPVIDADEIA 34 (180)
T ss_dssp EEEEEESTTSSHHHHHHHHHHT--------T-EEEEHHHHH
T ss_pred EEEEECCCcCCHHHHHHHHHHC--------CCCEECccHHH
Confidence 5778999999999999999874 67899999985
No 115
>PTZ00451 dephospho-CoA kinase; Provisional
Probab=98.01 E-value=6e-05 Score=75.71 Aligned_cols=35 Identities=37% Similarity=0.522 Sum_probs=30.3
Q ss_pred EEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEecccccc
Q 044777 216 VLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADAFK 257 (513)
Q Consensus 216 ~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDefR 257 (513)
.+|-+.|+.||||||+++.|.+. .++.+||+|.+.
T Consensus 2 ~iIGlTGgIgSGKStVs~~L~~~-------~G~~viDaD~ia 36 (244)
T PTZ00451 2 ILIGLTGGIACGKSTVSRILREE-------HHIEVIDADLVV 36 (244)
T ss_pred eEEEEECCCCCCHHHHHHHHHHH-------cCCeEEehHHHH
Confidence 36889999999999999999874 367899999994
No 116
>KOG0781 consensus Signal recognition particle receptor, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.00 E-value=3.3e-05 Score=83.63 Aligned_cols=216 Identities=18% Similarity=0.272 Sum_probs=120.9
Q ss_pred CCcchhhccchhhhHhhcCCCCCCCchHHHHHHHHHHhhccCccchhhhhh----cCCCCcchHHHHHHHHHHHHhhhhh
Q 044777 55 SGRVEKLERFPHYVARQMGFSDRKECPQLCKLAAEYIRKSEGCEDDIYTFF----SSEPAADSLFIKLVEEFERCILSYF 130 (513)
Q Consensus 55 ~g~~~~~e~f~~yva~~~~~~~~~~~~~~~~l~~~~l~~s~~~~~~i~~~~----~~~~~~~~l~~~~~eele~~~~~~~ 130 (513)
+++.+.++.|+-+.---.|-.|.++-|. ...+ ...+-+++| ++....++=...+||-+-+
T Consensus 244 ~s~~~~~~~l~~~~~d~~~s~~~~~~~~---~~~k-------~~g~aFg~fkglvG~K~L~eeDL~pvL~kM~e------ 307 (587)
T KOG0781|consen 244 ESMGGQLQDLDKDSSDDEGSADNSTDPA---ATKK-------TVGGAFGLFKGLVGSKSLSEEDLNPVLDKMTE------ 307 (587)
T ss_pred cccccccccccccccccccccccccchh---hhhc-------chhhHHHHHHhhcccccccHhhhHHHHHHHHH------
Confidence 3668888999888888778888887771 1122 222334444 3333222222344455555
Q ss_pred hhccchhhHHHHHhhcCCCchhhhhHHHHHHHHHhH---HHHhhhhhhHHHHHHHHHHHHHHHhcCCCC-CCcccchhcc
Q 044777 131 AFHWSHADLMISQVLNSDAEPKKKLKHIVMQATREQ---RFERVTKNLKVARVFTTLVEEMKAMGLAPN-DDSQCTEVMA 206 (513)
Q Consensus 131 ~~~~~~~~~li~~~l~~~~~~~~~~~~~v~~a~r~~---rf~r~~~~~~v~r~~~~~ve~~~~~~~~~~-~~~~~~~vl~ 206 (513)
+||+.-...+.+ .+|-+-|++.+-.. .|-+|.. .|+.++.+.+ .+=+.|. ..+...+|+.
T Consensus 308 --------hLitKNVA~eiA--~~LcEsV~a~Legkkv~sfs~V~~--Tvk~Al~daL----vQILTP~~sVDlLRdI~s 371 (587)
T KOG0781|consen 308 --------HLITKNVAAEIA--EKLCESVAASLEGKKVGSFSTVES--TVKEALRDAL----VQILTPQRSVDLLRDIMS 371 (587)
T ss_pred --------HHHhhhhhHHHH--HHHHHHHHHHhhhcccccchHHHH--HHHHHHHHHH----HHHcCCCchhhHHHHHHH
Confidence 788776665544 67777777766553 4544433 2333333333 1112221 2233333332
Q ss_pred cccCCCCCcEEEEEecCCCCchHHHHHHHhcCcccccC-CCCeEEeccccccc----chhh-hhhhhcc-ccC-chhhHH
Q 044777 207 PVALGDRSPVLLFMGGGMGAGKSTVLKDILKEPFWAGA-AGNAVVIEADAFKE----SDVI-YRALSSR-SHV-DMLQTA 278 (513)
Q Consensus 207 p~~~~~~~P~LILmaG~pGAGKSTla~~Ll~~~f~~~~-~~~aVvInaDefR~----~~p~-y~~l~~~-G~~-Dp~qaa 278 (513)
+....+|.+|.++|.||.||||-...++ ||-.+ +..+.+..+|.||. ++.. -+.+... |.. ..++
T Consensus 372 --ar~~krPYVi~fvGVNGVGKSTNLAKIa---yWLlqNkfrVLIAACDTFRsGAvEQLrtHv~rl~~l~~~~v~lfe-- 444 (587)
T KOG0781|consen 372 --ARRRKRPYVISFVGVNGVGKSTNLAKIA---YWLLQNKFRVLIAACDTFRSGAVEQLRTHVERLSALHGTMVELFE-- 444 (587)
T ss_pred --HHhcCCCeEEEEEeecCccccchHHHHH---HHHHhCCceEEEEeccchhhhHHHHHHHHHHHHHHhccchhHHHh--
Confidence 2335699999999999999999877665 46322 33445558999993 2211 1122211 111 0111
Q ss_pred HHHhHhHHHHHHHHHHHHHHCCCcEEEECcC
Q 044777 279 ELVHQSSTDAASSLLVTALNEGRDVIMDGTL 309 (513)
Q Consensus 279 e~v~~eAtrlA~~li~~aL~~GrsVIlDtTl 309 (513)
.-+...++.+|...++.|-++|.+||+=.|-
T Consensus 445 kGYgkd~a~vak~AI~~a~~~gfDVvLiDTA 475 (587)
T KOG0781|consen 445 KGYGKDAAGVAKEAIQEARNQGFDVVLIDTA 475 (587)
T ss_pred hhcCCChHHHHHHHHHHHHhcCCCEEEEecc
Confidence 1122335567888899999999999876654
No 117
>PLN02422 dephospho-CoA kinase
Probab=97.99 E-value=7.3e-05 Score=74.63 Aligned_cols=34 Identities=29% Similarity=0.423 Sum_probs=29.5
Q ss_pred EEEEecCCCCchHHHHHHHhcCcccccCCCCeEEeccccccc
Q 044777 217 LLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADAFKE 258 (513)
Q Consensus 217 LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDefR~ 258 (513)
+|.+.|++||||||+++.+.+. ++.+||+|.+-.
T Consensus 3 ~igltG~igsGKstv~~~l~~~--------g~~~idaD~~~~ 36 (232)
T PLN02422 3 VVGLTGGIASGKSTVSNLFKSS--------GIPVVDADKVAR 36 (232)
T ss_pred EEEEECCCCCCHHHHHHHHHHC--------CCeEEehhHHHH
Confidence 6889999999999999999843 678999999853
No 118
>PTZ00088 adenylate kinase 1; Provisional
Probab=97.99 E-value=0.00011 Score=72.92 Aligned_cols=35 Identities=26% Similarity=0.348 Sum_probs=30.2
Q ss_pred cEEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEeccccc
Q 044777 215 PVLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADAF 256 (513)
Q Consensus 215 P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDef 256 (513)
|.-|++.|+|||||||+++.|++. .++.+|+.|++
T Consensus 6 ~mrIvl~G~PGsGK~T~a~~La~~-------~g~~~is~gdl 40 (229)
T PTZ00088 6 PLKIVLFGAPGVGKGTFAEILSKK-------ENLKHINMGNI 40 (229)
T ss_pred CceEEEECCCCCCHHHHHHHHHHH-------hCCcEEECChH
Confidence 344889999999999999999987 57889988876
No 119
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=97.98 E-value=7.3e-05 Score=70.95 Aligned_cols=37 Identities=30% Similarity=0.636 Sum_probs=30.4
Q ss_pred EEEEecCCCCchHHHHHHHhcCcccccCCCCeEEecccccc
Q 044777 217 LLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADAFK 257 (513)
Q Consensus 217 LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDefR 257 (513)
++.|+|++||||||+++.|... + .+.++.++..|.|-
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~--l--~~~~~~v~~~D~~~ 37 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQ--L--GNPKVVIISQDSYY 37 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHH--h--CCCCeEEEEecccc
Confidence 4789999999999999999876 2 23567889999874
No 120
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=97.97 E-value=0.0001 Score=71.32 Aligned_cols=45 Identities=18% Similarity=0.398 Sum_probs=37.5
Q ss_pred CCCcEEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEeccccccc
Q 044777 212 DRSPVLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADAFKE 258 (513)
Q Consensus 212 ~~~P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDefR~ 258 (513)
..+|.++-+.|++||||||++.+|.+..+ ..+.+..++|.|.+|.
T Consensus 20 ~~~~~viW~TGLSGsGKSTiA~ale~~L~--~~G~~~y~LDGDnvR~ 64 (197)
T COG0529 20 GQKGAVIWFTGLSGSGKSTIANALEEKLF--AKGYHVYLLDGDNVRH 64 (197)
T ss_pred CCCCeEEEeecCCCCCHHHHHHHHHHHHH--HcCCeEEEecChhHhh
Confidence 45788899999999999999999988733 4566778899999984
No 121
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=97.96 E-value=6.9e-05 Score=71.71 Aligned_cols=32 Identities=28% Similarity=0.389 Sum_probs=28.4
Q ss_pred EEEecCCCCchHHHHHHHhcCcccccCCCCeEEeccccc
Q 044777 218 LFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADAF 256 (513)
Q Consensus 218 ILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDef 256 (513)
++|-|+|||||||+++.|++. .+.++|+.|.+
T Consensus 3 iiilG~pGaGK~T~A~~La~~-------~~i~hlstgd~ 34 (178)
T COG0563 3 ILILGPPGAGKSTLAKKLAKK-------LGLPHLDTGDI 34 (178)
T ss_pred EEEECCCCCCHHHHHHHHHHH-------hCCcEEcHhHH
Confidence 688999999999999999997 57889997766
No 122
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=97.95 E-value=1.5e-05 Score=68.73 Aligned_cols=21 Identities=29% Similarity=0.520 Sum_probs=19.8
Q ss_pred EEEecCCCCchHHHHHHHhcC
Q 044777 218 LFMGGGMGAGKSTVLKDILKE 238 (513)
Q Consensus 218 ILmaG~pGAGKSTla~~Ll~~ 238 (513)
|+|+|+|||||||+++.|.+.
T Consensus 1 I~i~G~~GsGKtTia~~L~~~ 21 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAER 21 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 689999999999999999987
No 123
>smart00072 GuKc Guanylate kinase homologues. Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.
Probab=97.94 E-value=5.7e-05 Score=71.45 Aligned_cols=24 Identities=29% Similarity=0.594 Sum_probs=22.1
Q ss_pred cEEEEEecCCCCchHHHHHHHhcC
Q 044777 215 PVLLFMGGGMGAGKSTVLKDILKE 238 (513)
Q Consensus 215 P~LILmaG~pGAGKSTla~~Ll~~ 238 (513)
+.++++.||+||||+|++..|.+.
T Consensus 2 ~r~ivl~Gpsg~GK~tl~~~L~~~ 25 (184)
T smart00072 2 RRPIVLSGPSGVGKGTLLAELIQE 25 (184)
T ss_pred CcEEEEECCCCCCHHHHHHHHHhc
Confidence 468999999999999999999887
No 124
>cd02030 NDUO42 NADH:Ubiquinone oxioreductase, 42 kDa (NDUO42) is a family of proteins that are highly similar to deoxyribonucleoside kinases (dNK). Members of this family have been identified as one of the subunits of NADH:Ubiquinone oxioreductase (complex I), a multi-protein complex located in the inner mitochondrial membrane. The main function of the complex is to transport electrons from NADH to ubiquinone, which is accompanied by the translocation of protons from the mitochondrial matrix to the inter membrane space.
Probab=97.94 E-value=0.0001 Score=71.89 Aligned_cols=22 Identities=18% Similarity=0.546 Sum_probs=20.0
Q ss_pred EEEEecCCCCchHHHHHHHhcC
Q 044777 217 LLFMGGGMGAGKSTVLKDILKE 238 (513)
Q Consensus 217 LILmaG~pGAGKSTla~~Ll~~ 238 (513)
+|.+.|.-||||||+++.|.+.
T Consensus 1 ~I~iEG~~GsGKSTl~~~L~~~ 22 (219)
T cd02030 1 VITVDGNIASGKGKLAKELAEK 22 (219)
T ss_pred CEEEEcCCCCCHHHHHHHHHHH
Confidence 4789999999999999999875
No 125
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=97.93 E-value=6.8e-05 Score=68.31 Aligned_cols=135 Identities=18% Similarity=0.153 Sum_probs=75.2
Q ss_pred EecCCCCchHHHHHHHhcCcccccCCCCeEEeccccc-ccchhh----hhhhhccccCchhhHHHHHhHhHHHHHHHHHH
Q 044777 220 MGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADAF-KESDVI----YRALSSRSHVDMLQTAELVHQSSTDAASSLLV 294 (513)
Q Consensus 220 maG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDef-R~~~p~----y~~l~~~G~~Dp~qaae~v~~eAtrlA~~li~ 294 (513)
|-|+|||||||+++.|++. .+.++|+..++ |+.... ...+.. ..+..+.+ ..++...++.
T Consensus 1 i~G~PgsGK~t~~~~la~~-------~~~~~is~~~llr~~~~~~s~~g~~i~~-----~l~~g~~v---p~~~v~~ll~ 65 (151)
T PF00406_consen 1 ILGPPGSGKGTQAKRLAKR-------YGLVHISVGDLLREEIKSDSELGKQIQE-----YLDNGELV---PDELVIELLK 65 (151)
T ss_dssp EEESTTSSHHHHHHHHHHH-------HTSEEEEHHHHHHHHHHTTSHHHHHHHH-----HHHTTSS-----HHHHHHHHH
T ss_pred CcCCCCCChHHHHHHHHHh-------cCcceechHHHHHHHHhhhhHHHHHHHH-----HHHhhccc---hHHHHHHHHH
Confidence 5699999999999999997 37889987554 433211 000000 00000111 1133444454
Q ss_pred HHHH---CCCcEEEECcCCChHHHHHHHHHHhhhhhcccccccccccccCCccccchhhhhhhhhhhhcccCCCCeEEE-
Q 044777 295 TALN---EGRDVIMDGTLSWVPFVVQTITMARNVHRHRYRMGVGYKKAEDGTVIENYWDRIGEREQAQDGKMRKPYRIE- 370 (513)
Q Consensus 295 ~aL~---~GrsVIlDtTlS~~~~~~qii~~Ar~~h~~~y~~g~GYkv~~~g~~~e~Yw~~v~~a~~~~~~~~~~gYrI~- 370 (513)
..+. ..+.+|+|+-=++......+.++.. ..+..+.
T Consensus 66 ~~l~~~~~~~g~ildGfPrt~~Qa~~l~~~~~----------------------------------------~~~~~~~~ 105 (151)
T PF00406_consen 66 ERLEQPPCNRGFILDGFPRTLEQAEALEEILE----------------------------------------EEGIPPDL 105 (151)
T ss_dssp HHHHSGGTTTEEEEESB-SSHHHHHHHHHHHH----------------------------------------HTTSEESE
T ss_pred HHHhhhcccceeeeeeccccHHHHHHHHHHHh----------------------------------------hcccchhe
Confidence 4444 3478999988777655443333110 0122232
Q ss_pred EEEEecChHHHHHHHHHHHHhcCCcCchhHHHHHHHHHHHHHHHhhc
Q 044777 371 LVGVVCDAYLAVVRGIRRAIMCRRAVRVKSQLKSHKRFANAFLTYCQ 417 (513)
Q Consensus 371 Lv~V~~dpelAv~Rv~~Rv~~gGh~VP~~~il~r~~rf~~nf~~~~~ 417 (513)
++.+.||.+....|... ...+.+.+|...|..+....+.
T Consensus 106 vi~L~~~~~~~~~R~~~--------d~~~~i~~Rl~~y~~~~~~i~~ 144 (151)
T PF00406_consen 106 VIFLDCPDETLIERLSQ--------DNEEVIKKRLEEYRENTEPILD 144 (151)
T ss_dssp EEEEE--HHHHHHHHHT--------GSHHHHHHHHHHHHHHHHHHHH
T ss_pred eeccccchhhhhhhccc--------CCHHHHHHHHHHHHHHHHHHHH
Confidence 34557899999888776 4566777888888777665543
No 126
>PRK14529 adenylate kinase; Provisional
Probab=97.93 E-value=7e-05 Score=74.30 Aligned_cols=122 Identities=16% Similarity=0.205 Sum_probs=68.8
Q ss_pred EEEecCCCCchHHHHHHHhcCcccccCCCCeEEec-ccccccchhhhhhhhccccCchhhHHHHHhHhHHHHHHHHHHHH
Q 044777 218 LFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIE-ADAFKESDVIYRALSSRSHVDMLQTAELVHQSSTDAASSLLVTA 296 (513)
Q Consensus 218 ILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvIn-aDefR~~~p~y~~l~~~G~~Dp~qaae~v~~eAtrlA~~li~~a 296 (513)
|+|.|+|||||||.++.|++. .+..+|+ .|.+|+..+.-..+... .........++.. .+...++...
T Consensus 3 I~l~G~PGsGK~T~a~~La~~-------~~~~~is~gdllr~~i~~~t~lg~~-i~~~i~~G~lvpd---ei~~~lv~~~ 71 (223)
T PRK14529 3 ILIFGPNGSGKGTQGALVKKK-------YDLAHIESGAIFREHIGGGTELGKK-AKEYIDRGDLVPD---DITIPMILET 71 (223)
T ss_pred EEEECCCCCCHHHHHHHHHHH-------HCCCCcccchhhhhhccCCChHHHH-HHHHHhccCcchH---HHHHHHHHHH
Confidence 678999999999999999987 3566775 56666543210000000 0000000111111 2333444444
Q ss_pred HHC--CCcEEEECcCCChHHHHHHHHHHhhhhhcccccccccccccCCccccchhhhhhhhhhhhcccCCCCeEEE-EEE
Q 044777 297 LNE--GRDVIMDGTLSWVPFVVQTITMARNVHRHRYRMGVGYKKAEDGTVIENYWDRIGEREQAQDGKMRKPYRIE-LVG 373 (513)
Q Consensus 297 L~~--GrsVIlDtTlS~~~~~~qii~~Ar~~h~~~y~~g~GYkv~~~g~~~e~Yw~~v~~a~~~~~~~~~~gYrI~-Lv~ 373 (513)
|.+ ...||+|+-=++....+.+.++... .|..+. ++.
T Consensus 72 l~~~~~~g~iLDGfPRt~~Qa~~l~~~l~~----------------------------------------~~~~~~~vi~ 111 (223)
T PRK14529 72 LKQDGKNGWLLDGFPRNKVQAEKLWEALQK----------------------------------------EGMKLDYVIE 111 (223)
T ss_pred HhccCCCcEEEeCCCCCHHHHHHHHHHHHh----------------------------------------cCCCCCEEEE
Confidence 433 4679999998886665544332211 122222 355
Q ss_pred EecChHHHHHHHHHHHH
Q 044777 374 VVCDAYLAVVRGIRRAI 390 (513)
Q Consensus 374 V~~dpelAv~Rv~~Rv~ 390 (513)
+.++.+..+.|...|..
T Consensus 112 l~~~~~~l~~Rl~~R~~ 128 (223)
T PRK14529 112 ILLPREVAKNRIMGRRL 128 (223)
T ss_pred EECCHHHHHHHhhCCcc
Confidence 67899999999998853
No 127
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.91 E-value=5.2e-06 Score=71.97 Aligned_cols=33 Identities=30% Similarity=0.488 Sum_probs=29.4
Q ss_pred EEEEecCCCCchHHHHHHHhcCcccccCCCCeEEeccccc
Q 044777 217 LLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADAF 256 (513)
Q Consensus 217 LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDef 256 (513)
+|+|.|+|||||||+++.|++. .++++|+.|++
T Consensus 1 vI~I~G~~gsGKST~a~~La~~-------~~~~~i~~d~~ 33 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAER-------LGFPVISMDDL 33 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH-------HTCEEEEEHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH-------HCCeEEEecce
Confidence 5899999999999999999987 36788999995
No 128
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=97.90 E-value=0.00023 Score=68.46 Aligned_cols=40 Identities=30% Similarity=0.591 Sum_probs=31.7
Q ss_pred CCcEEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEeccccc
Q 044777 213 RSPVLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADAF 256 (513)
Q Consensus 213 ~~P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDef 256 (513)
+.+.++.++|+|||||||+++.|... +. ..++.++..|.+
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~~--l~--~~~~~~i~~D~~ 43 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYEQ--LG--KLEIVIISQDNY 43 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHH--hc--ccCCeEeccccc
Confidence 35689999999999999999999875 21 135667888877
No 129
>PF02223 Thymidylate_kin: Thymidylate kinase; InterPro: IPR018094 Thymidylate kinase (2.7.4.9 from EC; dTMP kinase) catalyzes the phosphorylation of thymidine 5'-monophosphate (dTMP) to form thymidine 5'-diphosphate (dTDP) in the presence of ATP and magnesium: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate Thymidylate kinase is an ubiquitous enzyme of about 25 Kd and is important in the dTTP synthesis pathway for DNA synthesis. The function of dTMP kinase in eukaryotes comes from the study of a cell cycle mutant, cdc8, in Saccharomyces cerevisiae. Structural and functional analyses suggest that the cDNA codes for authentic human dTMP kinase. The mRNA levels and enzyme activities corresponded to cell cycle progression and cell growth stages[]. ; GO: 0004798 thymidylate kinase activity, 0005524 ATP binding, 0006233 dTDP biosynthetic process; PDB: 2PLR_B 1NMX_A 1NN0_A 2XX3_A 1NN3_A 1E9F_A 1E2Q_A 1E2D_A 1E9A_A 1E99_A ....
Probab=97.89 E-value=0.00055 Score=64.25 Aligned_cols=55 Identities=15% Similarity=0.114 Sum_probs=37.5
Q ss_pred EEEecChHHHHHHHHHHHHhcCCcCchhHHHHHHHHHHHHHHHhhcccceEEEEecCC
Q 044777 372 VGVVCDAYLAVVRGIRRAIMCRRAVRVKSQLKSHKRFANAFLTYCQLVDSARLYSTNA 429 (513)
Q Consensus 372 v~V~~dpelAv~Rv~~Rv~~gGh~VP~~~il~r~~rf~~nf~~~~~lvD~a~lyDNs~ 429 (513)
+++.+||+++.+|...|-. ..-........++++...+......-+++.+-|++.
T Consensus 123 ~~Ldv~pe~~~~R~~~r~~---~~~~~~~~~~~~~~~~~~y~~l~~~~~~~~iid~~~ 177 (186)
T PF02223_consen 123 FFLDVDPEEALKRIAKRGE---KDDEEEEDLEYLRRVREAYLELAKDPNNWVIIDASR 177 (186)
T ss_dssp EEEECCHHHHHHHHHHTSS---TTTTTTHHHHHHHHHHHHHHHHHHTTTTEEEEETTS
T ss_pred EEEecCHHHHHHHHHcCCc---cchHHHHHHHHHHHHHHHHHHHHcCCCCEEEEECCC
Confidence 5567999999999998844 223333445556666666666554457788888775
No 130
>PRK00091 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed
Probab=97.88 E-value=0.00014 Score=75.32 Aligned_cols=86 Identities=20% Similarity=0.286 Sum_probs=52.3
Q ss_pred CcEEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEecccccc--cch------hhhhhhhcc-ccC-chhhHHH-HHh
Q 044777 214 SPVLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADAFK--ESD------VIYRALSSR-SHV-DMLQTAE-LVH 282 (513)
Q Consensus 214 ~P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDefR--~~~------p~y~~l~~~-G~~-Dp~qaae-~v~ 282 (513)
+|.+++++||+||||||++..|++. .+..+|++|.+- ..+ |...+.... .++ |.....+ +..
T Consensus 3 ~~~~i~i~GptgsGKt~la~~la~~-------~~~~iis~Ds~Qvy~~l~i~Takp~~~E~~gv~hhlid~~~~~~~~s~ 75 (307)
T PRK00091 3 KPKVIVIVGPTASGKTALAIELAKR-------LNGEIISADSMQVYRGMDIGTAKPTAEERAGVPHHLIDILDPTESYSV 75 (307)
T ss_pred CceEEEEECCCCcCHHHHHHHHHHh-------CCCcEEeccccceeecccccCCCCCHHHHcCccEEeecccChhhcccH
Confidence 5789999999999999999999987 356789999952 111 111111111 111 2111111 111
Q ss_pred HhHHHHHHHHHHHHHHCCCcEEEE
Q 044777 283 QSSTDAASSLLVTALNEGRDVIMD 306 (513)
Q Consensus 283 ~eAtrlA~~li~~aL~~GrsVIlD 306 (513)
..-.+.|...++..+++|...|++
T Consensus 76 ~~f~~~a~~~i~~i~~~gk~pIlv 99 (307)
T PRK00091 76 ADFQRDALAAIADILARGKLPILV 99 (307)
T ss_pred HHHHHHHHHHHHHHHhCCCCEEEE
Confidence 112245667788888999988886
No 131
>PRK05416 glmZ(sRNA)-inactivating NTPase; Provisional
Probab=97.86 E-value=0.00043 Score=71.13 Aligned_cols=25 Identities=32% Similarity=0.392 Sum_probs=21.9
Q ss_pred CcEEEEEecCCCCchHHHHHHHhcC
Q 044777 214 SPVLLFMGGGMGAGKSTVLKDILKE 238 (513)
Q Consensus 214 ~P~LILmaG~pGAGKSTla~~Ll~~ 238 (513)
.+.+|+|.|++||||||+++.|...
T Consensus 5 ~~~~i~i~G~~GsGKtt~~~~l~~~ 29 (288)
T PRK05416 5 PMRLVIVTGLSGAGKSVALRALEDL 29 (288)
T ss_pred CceEEEEECCCCCcHHHHHHHHHHc
Confidence 4569999999999999999999654
No 132
>KOG3079 consensus Uridylate kinase/adenylate kinase [Nucleotide transport and metabolism]
Probab=97.82 E-value=0.00041 Score=67.41 Aligned_cols=148 Identities=21% Similarity=0.248 Sum_probs=88.9
Q ss_pred CCCcEEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEecccc-cccchh----hhhhhhccccCchhhHHHHHhHhHH
Q 044777 212 DRSPVLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADA-FKESDV----IYRALSSRSHVDMLQTAELVHQSST 286 (513)
Q Consensus 212 ~~~P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDe-fR~~~p----~y~~l~~~G~~Dp~qaae~v~~eAt 286 (513)
...|.+|++-|+|||||-|.-..+.+. .++.++++.+ +|+... .+..+.. +.......+. .
T Consensus 5 ~~~~~IifVlGGPGsgKgTqC~kiv~k-------y~ftHlSaGdLLR~E~~~~gse~g~~I~----~~i~~G~iVP---~ 70 (195)
T KOG3079|consen 5 LDKPPIIFVLGGPGSGKGTQCEKIVEK-------YGFTHLSAGDLLRAEIASAGSERGALIK----EIIKNGDLVP---V 70 (195)
T ss_pred ccCCCEEEEEcCCCCCcchHHHHHHHH-------cCceeecHHHHHHHHHccccChHHHHHH----HHHHcCCcCc---H
Confidence 356788888999999999999999987 4588997655 453211 1111110 0000011111 1
Q ss_pred HHHHHHHHHHHHCCCc---EEEECcCCChHHHHHHHHHHhhhhhcccccccccccccCCccccchhhhhhhhhhhhcccC
Q 044777 287 DAASSLLVTALNEGRD---VIMDGTLSWVPFVVQTITMARNVHRHRYRMGVGYKKAEDGTVIENYWDRIGEREQAQDGKM 363 (513)
Q Consensus 287 rlA~~li~~aL~~Grs---VIlDtTlS~~~~~~qii~~Ar~~h~~~y~~g~GYkv~~~g~~~e~Yw~~v~~a~~~~~~~~ 363 (513)
.+...+++.+|.+..+ |++|+=-++...... |+..-
T Consensus 71 ei~~~LL~~am~~~~~~~~fLIDGyPR~~~q~~~-------------------------------fe~~i---------- 109 (195)
T KOG3079|consen 71 EITLSLLEEAMRSSGDSNGFLIDGYPRNVDQLVE-------------------------------FERKI---------- 109 (195)
T ss_pred HHHHHHHHHHHHhcCCCCeEEecCCCCChHHHHH-------------------------------HHHHh----------
Confidence 3445667777765554 999988777554332 22100
Q ss_pred CCCeEEEEEEEecChHHHHHHHHHHHHhcCCc-CchhHHHHHHHHHHHHHHHh
Q 044777 364 RKPYRIELVGVVCDAYLAVVRGIRRAIMCRRA-VRVKSQLKSHKRFANAFLTY 415 (513)
Q Consensus 364 ~~gYrI~Lv~V~~dpelAv~Rv~~Rv~~gGh~-VP~~~il~r~~rf~~nf~~~ 415 (513)
.|-.=-++++.|+.+..+.|...|-...+|. -.++++.+|..-|..+-.+.
T Consensus 110 -~~~~~fvl~fdc~ee~~l~Rll~R~q~~~R~DDn~esikkR~et~~~~t~Pv 161 (195)
T KOG3079|consen 110 -QGDPDFVLFFDCPEETMLKRLLHRGQSNSRSDDNEESIKKRLETYNKSTLPV 161 (195)
T ss_pred -cCCCCEEEEEeCCHHHHHHHHHhhcccCCCCCCchHHHHHHHHHHHHcchHH
Confidence 0000124677899999999999998776653 34677777766666553333
No 133
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=97.82 E-value=0.00036 Score=66.95 Aligned_cols=34 Identities=38% Similarity=0.415 Sum_probs=30.2
Q ss_pred EEEecCCCCchHHHHHHHhcCcccccCCCCeEEeccccccc
Q 044777 218 LFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADAFKE 258 (513)
Q Consensus 218 ILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDefR~ 258 (513)
|++.|+|||||||+.+.|++. .+..++|.|.+-+
T Consensus 5 IvLiG~mGaGKSTIGr~LAk~-------L~~~F~D~D~~Ie 38 (172)
T COG0703 5 IVLIGFMGAGKSTIGRALAKA-------LNLPFIDTDQEIE 38 (172)
T ss_pred EEEEcCCCCCHhHHHHHHHHH-------cCCCcccchHHHH
Confidence 678999999999999999997 6788999998843
No 134
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=97.82 E-value=0.0002 Score=67.50 Aligned_cols=37 Identities=32% Similarity=0.413 Sum_probs=31.3
Q ss_pred cEEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEeccccccc
Q 044777 215 PVLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADAFKE 258 (513)
Q Consensus 215 P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDefR~ 258 (513)
+..|++.|+|||||||+++.|+.. .+..+++.|...+
T Consensus 4 ~~~I~liG~~GaGKStl~~~La~~-------l~~~~vd~D~~i~ 40 (172)
T PRK05057 4 KRNIFLVGPMGAGKSTIGRQLAQQ-------LNMEFYDSDQEIE 40 (172)
T ss_pred CCEEEEECCCCcCHHHHHHHHHHH-------cCCcEEECCchHH
Confidence 456899999999999999999987 4677999997643
No 135
>PTZ00301 uridine kinase; Provisional
Probab=97.82 E-value=0.00018 Score=70.59 Aligned_cols=43 Identities=14% Similarity=0.219 Sum_probs=31.0
Q ss_pred EEEecChHHHHHHHHHHHHh-cCCcCchhHHHHHHHHH-HHHHHHhh
Q 044777 372 VGVVCDAYLAVVRGIRRAIM-CRRAVRVKSQLKSHKRF-ANAFLTYC 416 (513)
Q Consensus 372 v~V~~dpelAv~Rv~~Rv~~-gGh~VP~~~il~r~~rf-~~nf~~~~ 416 (513)
+||.++.+++..|.+.|-.. .|+. .+.++..|... ..++..|+
T Consensus 131 ifvd~~~d~~~~Rr~~Rd~~~rG~~--~e~v~~~~~~~v~~~~~~~I 175 (210)
T PTZ00301 131 IFVDTPLDICLIRRAKRDMRERGRT--FESVIEQYEATVRPMYYAYV 175 (210)
T ss_pred EEEeCChhHHHHHHHhhhHHhcCCC--HHHHHHHHHHhhcccHHHHc
Confidence 88899999999999999654 6774 45566666553 55566554
No 136
>PLN02348 phosphoribulokinase
Probab=97.82 E-value=0.00026 Score=75.64 Aligned_cols=43 Identities=28% Similarity=0.504 Sum_probs=33.4
Q ss_pred CCCcEEEEEecCCCCchHHHHHHHhcCcccccC---------------CCCeEEeccccc
Q 044777 212 DRSPVLLFMGGGMGAGKSTVLKDILKEPFWAGA---------------AGNAVVIEADAF 256 (513)
Q Consensus 212 ~~~P~LILmaG~pGAGKSTla~~Ll~~~f~~~~---------------~~~aVvInaDef 256 (513)
..+|.+|-|+|++||||||+++.|... +... ...+.+|.-|.|
T Consensus 46 ~~~p~IIGIaG~SGSGKSTfA~~L~~~--Lg~~~~~~~~~~~~~~~l~~~~~~VI~lDDY 103 (395)
T PLN02348 46 DDGTVVIGLAADSGCGKSTFMRRLTSV--FGGAAKPPKGGNPDSNTLISDTTTVICLDDY 103 (395)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHH--HhhccCCCccccccccccccCceEEEEcccc
Confidence 457899999999999999999999875 2111 124678888888
No 137
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.80 E-value=0.00079 Score=72.59 Aligned_cols=42 Identities=21% Similarity=0.350 Sum_probs=32.6
Q ss_pred cEEEEEecCCCCchHHHHHHHhcCcccc--cCCCCeEEeccccccc
Q 044777 215 PVLLFMGGGMGAGKSTVLKDILKEPFWA--GAAGNAVVIEADAFKE 258 (513)
Q Consensus 215 P~LILmaG~pGAGKSTla~~Ll~~~f~~--~~~~~aVvInaDefR~ 258 (513)
+.++++.||+|+||||++..|+.. +. ..+..+.+|+.|.+|.
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~--~~~~~~g~~V~li~~D~~r~ 264 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAAR--YALLYGKKKVALITLDTYRI 264 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH--HHHhcCCCeEEEEECCccHH
Confidence 458888999999999999988764 21 2245678899999873
No 138
>PLN02459 probable adenylate kinase
Probab=97.78 E-value=0.00031 Score=71.44 Aligned_cols=38 Identities=24% Similarity=0.163 Sum_probs=29.4
Q ss_pred CcEEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEeccc-cccc
Q 044777 214 SPVLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEAD-AFKE 258 (513)
Q Consensus 214 ~P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaD-efR~ 258 (513)
+|.-|++.|+|||||||+++.|++. .++++|+.. .+|+
T Consensus 28 ~~~~ii~~G~PGsGK~T~a~~la~~-------~~~~~is~gdllR~ 66 (261)
T PLN02459 28 RNVNWVFLGCPGVGKGTYASRLSKL-------LGVPHIATGDLVRE 66 (261)
T ss_pred CccEEEEECCCCCCHHHHHHHHHHH-------hCCcEEeCcHHHHH
Confidence 3344677899999999999999987 477888764 4554
No 139
>TIGR00017 cmk cytidylate kinase. This family consists of cytidylate kinase, which catalyzes the phosphorylation of cytidine 5-monophosphate (dCMP) to cytidine 5 -diphosphate (dCDP) in the presence of ATP or GTP. UMP and dCMP can also act as acceptors.
Probab=97.78 E-value=0.00067 Score=66.74 Aligned_cols=35 Identities=29% Similarity=0.456 Sum_probs=29.8
Q ss_pred cEEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEeccccc
Q 044777 215 PVLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADAF 256 (513)
Q Consensus 215 P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDef 256 (513)
+.+|.|.||+||||||+++.|++. .+..+++++.+
T Consensus 2 ~~~i~i~G~~GsGKst~~~~la~~-------~~~~~~~~g~~ 36 (217)
T TIGR00017 2 AMIIAIDGPSGAGKSTVAKAVAEK-------LGYAYLDSGAM 36 (217)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHH-------hCCceeeCchH
Confidence 568999999999999999999986 35667888876
No 140
>PRK07429 phosphoribulokinase; Provisional
Probab=97.78 E-value=0.00094 Score=69.79 Aligned_cols=41 Identities=32% Similarity=0.470 Sum_probs=31.9
Q ss_pred CCCcEEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEeccccc
Q 044777 212 DRSPVLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADAF 256 (513)
Q Consensus 212 ~~~P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDef 256 (513)
..+|.+|-|+|++||||||+++.|... +. ..+..+|..|.+
T Consensus 5 ~~~~~IIgI~G~SGSGKSTla~~L~~l--l~--~~~~~vi~~Dd~ 45 (327)
T PRK07429 5 PDRPVLLGVAGDSGCGKTTFLRGLADL--LG--EELVTVICTDDY 45 (327)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHhH--hc--cCceEEEEeccc
Confidence 458999999999999999999999875 21 123456777877
No 141
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=97.77 E-value=0.00012 Score=69.40 Aligned_cols=40 Identities=25% Similarity=0.330 Sum_probs=32.3
Q ss_pred EEEEecCCCCchHHHHHHHhcCcccccCCCCeEEeccccccc
Q 044777 217 LLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADAFKE 258 (513)
Q Consensus 217 LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDefR~ 258 (513)
+|.|+|++||||||+++.|... +...+.++.+|+.|.|-.
T Consensus 1 ii~i~G~sgsGKttla~~l~~~--l~~~~~~~~~i~~Ddf~~ 40 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQ--LRVNGIGPVVISLDDYYV 40 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHH--HHHcCCCEEEEehhhccc
Confidence 5789999999999999999875 333345778999999953
No 142
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=97.76 E-value=4.5e-05 Score=73.85 Aligned_cols=95 Identities=18% Similarity=0.197 Sum_probs=54.8
Q ss_pred cEEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEeccccccc----chhhhhhhhccccCchhhHHHHHhHhHHHHHH
Q 044777 215 PVLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADAFKE----SDVIYRALSSRSHVDMLQTAELVHQSSTDAAS 290 (513)
Q Consensus 215 P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDefR~----~~p~y~~l~~~G~~Dp~qaae~v~~eAtrlA~ 290 (513)
|.++++.||+|+||||.+.+|+.. +...+..+.+|+.|.+|. ++-.|........+. . .........+.
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~--~~~~~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~----~-~~~~~~~~~~~ 73 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAAR--LKLKGKKVALISADTYRIGAVEQLKTYAEILGVPFYV----A-RTESDPAEIAR 73 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHH--HHHTT--EEEEEESTSSTHHHHHHHHHHHHHTEEEEE----S-STTSCHHHHHH
T ss_pred CEEEEEECCCCCchHhHHHHHHHH--HhhccccceeecCCCCCccHHHHHHHHHHHhccccch----h-hcchhhHHHHH
Confidence 889999999999999999999875 333356778999999983 443443322210000 0 00001223344
Q ss_pred HHHHHHHHCCCc-EEEECcCCChHHHH
Q 044777 291 SLLVTALNEGRD-VIMDGTLSWVPFVV 316 (513)
Q Consensus 291 ~li~~aL~~Grs-VIlDtTlS~~~~~~ 316 (513)
..++.+-.++.+ |++||.-..+.-..
T Consensus 74 ~~l~~~~~~~~D~vlIDT~Gr~~~d~~ 100 (196)
T PF00448_consen 74 EALEKFRKKGYDLVLIDTAGRSPRDEE 100 (196)
T ss_dssp HHHHHHHHTTSSEEEEEE-SSSSTHHH
T ss_pred HHHHHHhhcCCCEEEEecCCcchhhHH
Confidence 455555566664 66777665554433
No 143
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=97.74 E-value=0.0002 Score=68.16 Aligned_cols=43 Identities=19% Similarity=0.220 Sum_probs=29.1
Q ss_pred EEEecChHHHHHHHHHHH-HhcCCcCchhHHHHHHHHHHHHHHHhh
Q 044777 372 VGVVCDAYLAVVRGIRRA-IMCRRAVRVKSQLKSHKRFANAFLTYC 416 (513)
Q Consensus 372 v~V~~dpelAv~Rv~~Rv-~~gGh~VP~~~il~r~~rf~~nf~~~~ 416 (513)
++|.++++++..|.+.|= ..-|+.. +.++.+|......+..|+
T Consensus 131 ifld~~~~~~l~Rri~RD~~~rG~~~--~~~~~~~~~~~~~~~~~I 174 (194)
T PF00485_consen 131 IFLDADEDLRLERRIQRDVAERGRSP--EEVIAQYERVRPGYERYI 174 (194)
T ss_dssp EEEEE-HHHHHHHHHHHHHHHS-S-H--HHHHHHHHTHHHHHHHCT
T ss_pred EEecccHHHHHHHHhhhhccccCCcc--eeEEEEeecCChhhhhhe
Confidence 678899999999988884 4556644 566667776666666665
No 144
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.72 E-value=0.00017 Score=77.12 Aligned_cols=44 Identities=20% Similarity=0.276 Sum_probs=35.5
Q ss_pred CCcEEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEeccccccc
Q 044777 213 RSPVLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADAFKE 258 (513)
Q Consensus 213 ~~P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDefR~ 258 (513)
..+.++++.||+|+||||++..|+.. +...+..+.+|++|.+|.
T Consensus 204 ~~~~ii~lvGptGvGKTTt~akLA~~--l~~~g~~V~lItaDtyR~ 247 (407)
T PRK12726 204 SNHRIISLIGQTGVGKTTTLVKLGWQ--LLKQNRTVGFITTDTFRS 247 (407)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHH--HHHcCCeEEEEeCCccCc
Confidence 45789999999999999999999864 222345677899999984
No 145
>PLN02924 thymidylate kinase
Probab=97.72 E-value=0.00088 Score=66.10 Aligned_cols=89 Identities=22% Similarity=0.222 Sum_probs=50.5
Q ss_pred CCCCCcEEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEec-cc--c-----cccchhhhhhhhccccCchhhHHHHH
Q 044777 210 LGDRSPVLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIE-AD--A-----FKESDVIYRALSSRSHVDMLQTAELV 281 (513)
Q Consensus 210 ~~~~~P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvIn-aD--e-----fR~~~p~y~~l~~~G~~Dp~qaae~v 281 (513)
.+.+++.+|.+.|+.||||||.++.|.+. +...+..++++. ++ . +++. +......+|....-+
T Consensus 11 ~~~~~g~~IviEGiDGsGKsTq~~~L~~~--l~~~g~~v~~~~ep~~~~~~g~~ir~~------l~~~~~~~~~~~~ll- 81 (220)
T PLN02924 11 SVESRGALIVLEGLDRSGKSTQCAKLVSF--LKGLGVAAELWRFPDRTTSVGQMISAY------LSNKSQLDDRAIHLL- 81 (220)
T ss_pred CcCCCCeEEEEECCCCCCHHHHHHHHHHH--HHhcCCCceeeeCCCCCChHHHHHHHH------HhCCCCCCHHHHHHH-
Confidence 34567889999999999999999999886 443344443331 22 1 2211 111001133221111
Q ss_pred hHhHHHHH--HHHHHHHHHCCCcEEEECcC
Q 044777 282 HQSSTDAA--SSLLVTALNEGRDVIMDGTL 309 (513)
Q Consensus 282 ~~eAtrlA--~~li~~aL~~GrsVIlDtTl 309 (513)
.+++.+ ...+..+++.|..||+|--.
T Consensus 82 --f~adR~~~~~~I~pal~~g~vVI~DRy~ 109 (220)
T PLN02924 82 --FSANRWEKRSLMERKLKSGTTLVVDRYS 109 (220)
T ss_pred --HHHHHHHHHHHHHHHHHCCCEEEEccch
Confidence 122211 23478889999999999644
No 146
>COG0237 CoaE Dephospho-CoA kinase [Coenzyme metabolism]
Probab=97.66 E-value=0.00034 Score=68.46 Aligned_cols=36 Identities=36% Similarity=0.504 Sum_probs=30.7
Q ss_pred cEEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEeccccccc
Q 044777 215 PVLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADAFKE 258 (513)
Q Consensus 215 P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDefR~ 258 (513)
+.+|-+.|.+||||||+++.+.+. ++.+|++|.+..
T Consensus 2 ~~iIglTG~igsGKStva~~~~~~--------G~~vidaD~v~r 37 (201)
T COG0237 2 MLIIGLTGGIGSGKSTVAKILAEL--------GFPVIDADDVAR 37 (201)
T ss_pred ceEEEEecCCCCCHHHHHHHHHHc--------CCeEEEccHHHH
Confidence 568899999999999999988763 677999999843
No 147
>PRK13974 thymidylate kinase; Provisional
Probab=97.65 E-value=0.0016 Score=63.27 Aligned_cols=24 Identities=25% Similarity=0.354 Sum_probs=21.9
Q ss_pred cEEEEEecCCCCchHHHHHHHhcC
Q 044777 215 PVLLFMGGGMGAGKSTVLKDILKE 238 (513)
Q Consensus 215 P~LILmaG~pGAGKSTla~~Ll~~ 238 (513)
..+|.+-|++||||||.++.|.+.
T Consensus 3 g~~i~~eG~dGsGKsT~~~~l~~~ 26 (212)
T PRK13974 3 GKFIVLEGIDGCGKTTQIDHLSKW 26 (212)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 578999999999999999999875
No 148
>cd02026 PRK Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=97.63 E-value=0.0013 Score=66.95 Aligned_cols=58 Identities=17% Similarity=0.091 Sum_probs=39.1
Q ss_pred EEEEecChHHHHHHHHHHHHh-cCCcCchhHHHHHHHHHHHHHHHh----hcccceEEEEecCCC
Q 044777 371 LVGVVCDAYLAVVRGIRRAIM-CRRAVRVKSQLKSHKRFANAFLTY----CQLVDSARLYSTNAL 430 (513)
Q Consensus 371 Lv~V~~dpelAv~Rv~~Rv~~-gGh~VP~~~il~r~~rf~~nf~~~----~~lvD~a~lyDNs~~ 430 (513)
.++|.+++++..+|-++|... .|+ ..+.+++++..-...+..| ...+|-++-++.+..
T Consensus 119 ~I~vd~~~e~r~~r~i~Rd~~rrG~--s~e~v~~~i~~r~~~~~~~I~P~~~~ADvVI~~~p~~l 181 (273)
T cd02026 119 SVYLDISDEVKFAWKIQRDMAERGH--SLEDVLASIEARKPDFEAYIDPQKQYADVVIQVLPTQL 181 (273)
T ss_pred EEEEECChhHHHHHHHHHHHHHhCC--CHHHHHHHHHhhchhHHHHhccccccCcEEEEccCccC
Confidence 378889999998888888765 454 4455656664444445554 677888776765543
No 149
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=97.60 E-value=0.00017 Score=69.72 Aligned_cols=35 Identities=29% Similarity=0.357 Sum_probs=29.8
Q ss_pred EEEEecCCCCchHHHHHHHhcCcccccCCCCeEEecccccc
Q 044777 217 LLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADAFK 257 (513)
Q Consensus 217 LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDefR 257 (513)
+|.|+|++||||||+++.|.+.. .++.+|+.|.|-
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~~------~~~~~i~~Ddf~ 35 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRIL------PNCCVIHQDDFF 35 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc------CCCeEEcccccc
Confidence 47899999999999999999871 367889999883
No 150
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=97.58 E-value=0.00015 Score=73.79 Aligned_cols=43 Identities=19% Similarity=0.367 Sum_probs=34.3
Q ss_pred CCcEEEEEecCCCCchHHHHHHHhcCcccccC-C-CCeEEecccccc
Q 044777 213 RSPVLLFMGGGMGAGKSTVLKDILKEPFWAGA-A-GNAVVIEADAFK 257 (513)
Q Consensus 213 ~~P~LILmaG~pGAGKSTla~~Ll~~~f~~~~-~-~~aVvInaDefR 257 (513)
..|.+++++||+|+||||++..|+.. +... + ..+.+|+.|.+|
T Consensus 192 ~~~~vi~~vGptGvGKTTt~~kLa~~--~~~~~g~~~V~li~~D~~r 236 (282)
T TIGR03499 192 EQGGVIALVGPTGVGKTTTLAKLAAR--FVLEHGNKKVALITTDTYR 236 (282)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH--HHHHcCCCeEEEEECCccc
Confidence 36789999999999999999999875 2222 2 567789999986
No 151
>PLN02318 phosphoribulokinase/uridine kinase
Probab=97.58 E-value=0.0011 Score=74.41 Aligned_cols=39 Identities=26% Similarity=0.399 Sum_probs=32.0
Q ss_pred CCcEEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEecccccc
Q 044777 213 RSPVLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADAFK 257 (513)
Q Consensus 213 ~~P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDefR 257 (513)
..+.+|.|+|+|||||||+++.|... + +++.+|.-|.+.
T Consensus 63 ~~riIIGIaGpSGSGKTTLAk~Lagl--L----p~vgvIsmDdy~ 101 (656)
T PLN02318 63 DGIILVGVAGPSGAGKTVFTEKVLNF--M----PSIAVISMDNYN 101 (656)
T ss_pred CCeEEEEEECCCCCcHHHHHHHHHhh--C----CCcEEEEEccee
Confidence 46799999999999999999999876 2 345677888774
No 152
>PRK00023 cmk cytidylate kinase; Provisional
Probab=97.56 E-value=0.0026 Score=62.79 Aligned_cols=36 Identities=25% Similarity=0.386 Sum_probs=30.7
Q ss_pred CcEEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEeccccc
Q 044777 214 SPVLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADAF 256 (513)
Q Consensus 214 ~P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDef 256 (513)
.+.+|.+.|++||||||+++.+++. .++.+++.|.+
T Consensus 3 ~~~~i~i~g~~gsGksti~~~la~~-------~~~~~~~~~~~ 38 (225)
T PRK00023 3 KAIVIAIDGPAGSGKGTVAKILAKK-------LGFHYLDTGAM 38 (225)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHH-------hCCCcccCchh
Confidence 4678999999999999999999987 35668888775
No 153
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=97.53 E-value=0.0015 Score=74.56 Aligned_cols=34 Identities=21% Similarity=0.339 Sum_probs=29.6
Q ss_pred EEEEecCCCCchHHHHHHHhcCcccccCCCCeEEecccccc
Q 044777 217 LLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADAFK 257 (513)
Q Consensus 217 LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDefR 257 (513)
.|.|-|+|||||||+++.|++. .++.++++..+-
T Consensus 3 ~i~I~G~~GsGKST~ak~la~~-------l~~~~~~~g~~~ 36 (712)
T PRK09518 3 IVAIDGPAGVGKSSVSRALAQY-------LGYAYLDTGAMY 36 (712)
T ss_pred EEEEECCCCCCHHHHHHHHHHH-------hCCcEeecCcEe
Confidence 6789999999999999999997 467789888873
No 154
>PRK03333 coaE dephospho-CoA kinase/protein folding accessory domain-containing protein; Provisional
Probab=97.46 E-value=0.0011 Score=70.87 Aligned_cols=34 Identities=41% Similarity=0.612 Sum_probs=29.2
Q ss_pred EEEEecCCCCchHHHHHHHhcCcccccCCCCeEEeccccccc
Q 044777 217 LLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADAFKE 258 (513)
Q Consensus 217 LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDefR~ 258 (513)
.|.+.|++||||||+++.|... ++.+||+|.+-.
T Consensus 3 ~IgltG~igsGKStv~~~L~~~--------G~~vidaD~i~~ 36 (395)
T PRK03333 3 RIGLTGGIGAGKSTVAARLAEL--------GAVVVDADVLAR 36 (395)
T ss_pred EEEEECCCCCCHHHHHHHHHHC--------CCeEEehHHHHH
Confidence 4789999999999999999763 667999999843
No 155
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=97.43 E-value=0.00044 Score=64.15 Aligned_cols=40 Identities=18% Similarity=0.359 Sum_probs=32.6
Q ss_pred EEEEecCCCCchHHHHHHHhcCcccccCCCCeEEeccccccc
Q 044777 217 LLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADAFKE 258 (513)
Q Consensus 217 LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDefR~ 258 (513)
++++.|+||+||||++..++.. +...+..+.+|+.|.+|.
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~--~~~~g~~v~~i~~D~~~~ 41 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALY--LKKKGKKVLLVAADTYRP 41 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHH--HHHCCCcEEEEEcCCCCh
Confidence 6789999999999999998875 444455678899998874
No 156
>PF01202 SKI: Shikimate kinase; InterPro: IPR000623 Shikimate kinase (2.7.1.71 from EC) catalyses the fifth step in the biosynthesis of aromatic amino acids from chorismate (the so-called shikimate pathway) []. The enzyme catalyses the following reaction: ATP + shikimate = ADP + shikimate-3-phosphate The protein is found in bacteria (gene aroK or aroL), plants and fungi (where it is part of a multifunctional enzyme that catalyses five consecutive steps in this pathway). In 1994, the 3D structure of shikimate kinase was predicted to be very close to that of adenylate kinase, suggesting a functional similarity as well as an evolutionary relationship []. This prediction has since been confirmed experimentally. The protein is reported to possess an alpha/beta fold, consisting of a central sheet of five parallel beta-strands flanked by alpha-helices. Such a topology is very similar to that of adenylate kinase [].; GO: 0004765 shikimate kinase activity, 0005524 ATP binding; PDB: 3VAA_C 1KO8_B 1KO4_B 1KO1_A 1KOF_A 1KNQ_A 1KO5_A 1KAG_A 2PT5_D 1SHK_A ....
Probab=97.42 E-value=0.0021 Score=59.53 Aligned_cols=27 Identities=41% Similarity=0.341 Sum_probs=24.1
Q ss_pred CCCchHHHHHHHhcCcccccCCCCeEEecccccc
Q 044777 224 MGAGKSTVLKDILKEPFWAGAAGNAVVIEADAFK 257 (513)
Q Consensus 224 pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDefR 257 (513)
|||||||+.+.|++. .+..++|.|.+-
T Consensus 1 ~GsGKStvg~~lA~~-------L~~~fiD~D~~i 27 (158)
T PF01202_consen 1 MGSGKSTVGKLLAKR-------LGRPFIDLDDEI 27 (158)
T ss_dssp TTSSHHHHHHHHHHH-------HTSEEEEHHHHH
T ss_pred CCCcHHHHHHHHHHH-------hCCCccccCHHH
Confidence 799999999999997 577899999883
No 157
>PRK14021 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=97.41 E-value=0.0032 Score=69.91 Aligned_cols=35 Identities=29% Similarity=0.233 Sum_probs=29.5
Q ss_pred EEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEecccccc
Q 044777 216 VLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADAFK 257 (513)
Q Consensus 216 ~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDefR 257 (513)
..|++.|.|||||||+.+.|++. .+..+||.|..-
T Consensus 7 ~~i~LiG~~GaGKttvg~~LA~~-------L~~~fiD~D~~i 41 (542)
T PRK14021 7 PQAVIIGMMGAGKTRVGKEVAQM-------MRLPFADADVEI 41 (542)
T ss_pred ccEEEECCCCCCHHHHHHHHHHH-------hCCCEEEchHHH
Confidence 34667899999999999999997 567799999863
No 158
>PRK13975 thymidylate kinase; Provisional
Probab=97.40 E-value=0.0058 Score=57.49 Aligned_cols=24 Identities=25% Similarity=0.338 Sum_probs=22.3
Q ss_pred cEEEEEecCCCCchHHHHHHHhcC
Q 044777 215 PVLLFMGGGMGAGKSTVLKDILKE 238 (513)
Q Consensus 215 P~LILmaG~pGAGKSTla~~Ll~~ 238 (513)
+.+|++.|++||||||+++.|.+.
T Consensus 2 ~~~I~ieG~~GsGKtT~~~~L~~~ 25 (196)
T PRK13975 2 NKFIVFEGIDGSGKTTQAKLLAEK 25 (196)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 568999999999999999999987
No 159
>PRK13951 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=97.39 E-value=0.0037 Score=68.68 Aligned_cols=35 Identities=34% Similarity=0.421 Sum_probs=30.6
Q ss_pred EEEecCCCCchHHHHHHHhcCcccccCCCCeEEecccccccc
Q 044777 218 LFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADAFKES 259 (513)
Q Consensus 218 ILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDefR~~ 259 (513)
|++.|+|||||||+++.|++. .++.+|++|.+.+.
T Consensus 3 I~l~G~~GsGKSTv~~~La~~-------lg~~~id~D~~i~~ 37 (488)
T PRK13951 3 IFLVGMMGSGKSTIGKRVSEV-------LDLQFIDMDEEIER 37 (488)
T ss_pred EEEECCCCCCHHHHHHHHHHH-------cCCeEEECcHHHHH
Confidence 789999999999999999986 57789999988643
No 160
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=97.39 E-value=0.0015 Score=64.86 Aligned_cols=41 Identities=29% Similarity=0.549 Sum_probs=33.9
Q ss_pred CCcEEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEecccccc
Q 044777 213 RSPVLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADAFK 257 (513)
Q Consensus 213 ~~P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDefR 257 (513)
.++.+|-++|++||||||+++.|... +. ...+++|.-|.+=
T Consensus 6 ~~~iiIgIaG~SgSGKTTva~~l~~~--~~--~~~~~~I~~D~YY 46 (218)
T COG0572 6 EKVIIIGIAGGSGSGKTTVAKELSEQ--LG--VEKVVVISLDDYY 46 (218)
T ss_pred CceEEEEEeCCCCCCHHHHHHHHHHH--hC--cCcceEeeccccc
Confidence 56799999999999999999999987 22 2366788999883
No 161
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=97.39 E-value=0.0018 Score=61.07 Aligned_cols=86 Identities=21% Similarity=0.252 Sum_probs=46.8
Q ss_pred CcEEEEEecCCCCchHHHHHHHhcC---ccc-------------ccCCCCeEEecccccccchhhhhhhhccccCchhhH
Q 044777 214 SPVLLFMGGGMGAGKSTVLKDILKE---PFW-------------AGAAGNAVVIEADAFKESDVIYRALSSRSHVDMLQT 277 (513)
Q Consensus 214 ~P~LILmaG~pGAGKSTla~~Ll~~---~f~-------------~~~~~~aVvInaDefR~~~p~y~~l~~~G~~Dp~qa 277 (513)
++++++|.||+||||||+++.|... .|. +.++.+..+|+.++|.+... -..+...+.++
T Consensus 1 ~~r~ivl~Gpsg~GK~~l~~~L~~~~~~~~~~~v~~TTR~~r~~E~~g~~y~fvs~~~f~~~~~-~~~fie~~~~~---- 75 (183)
T PF00625_consen 1 KRRPIVLVGPSGSGKSTLAKRLIQEFPDKFGRVVSHTTRPPRPGEVDGVDYHFVSKEEFERMIK-AGEFIEYGEYD---- 75 (183)
T ss_dssp SSSEEEEESSTTSSHHHHHHHHHHHSTTTEEEEEEEESS-GGTTS-TTTSEEE--HHHHHHHHH-TTHEEEEEEET----
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhcccccccceeecccCCcccccCCcceEEEeechhhhhhc-cccEEEEeeec----
Confidence 3568899999999999999999764 110 12234556777777743210 00000000000
Q ss_pred HHHHhHhHHHHHHHHHHHHHHCCCcEEEECcC
Q 044777 278 AELVHQSSTDAASSLLVTALNEGRDVIMDGTL 309 (513)
Q Consensus 278 ae~v~~eAtrlA~~li~~aL~~GrsVIlDtTl 309 (513)
. +...+ ...-+...+++|..+|+|...
T Consensus 76 -g--~~YGt--~~~~i~~~~~~gk~~il~~~~ 102 (183)
T PF00625_consen 76 -G--NYYGT--SKSAIDKVLEEGKHCILDVDP 102 (183)
T ss_dssp -T--EEEEE--EHHHHHHHHHTTTEEEEEETH
T ss_pred -c--hhhhh--ccchhhHhhhcCCcEEEEccH
Confidence 0 00011 123356888999999999774
No 162
>PRK13477 bifunctional pantoate ligase/cytidylate kinase; Provisional
Probab=97.38 E-value=0.0022 Score=70.93 Aligned_cols=37 Identities=27% Similarity=0.458 Sum_probs=32.6
Q ss_pred CCcEEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEeccccc
Q 044777 213 RSPVLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADAF 256 (513)
Q Consensus 213 ~~P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDef 256 (513)
.+|.+|.+.|++||||||+++.|++. .++.+++.|.+
T Consensus 282 ~~~~ii~i~G~sgsGKst~a~~la~~-------l~~~~~d~g~~ 318 (512)
T PRK13477 282 KRQPIIAIDGPAGAGKSTVTRAVAKK-------LGLLYLDTGAM 318 (512)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHH-------cCCeEecCCce
Confidence 36788999999999999999999987 46889998877
No 163
>PLN02165 adenylate isopentenyltransferase
Probab=97.36 E-value=0.0013 Score=68.96 Aligned_cols=37 Identities=22% Similarity=0.336 Sum_probs=31.5
Q ss_pred CCcEEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEeccccc
Q 044777 213 RSPVLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADAF 256 (513)
Q Consensus 213 ~~P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDef 256 (513)
.++.+++|.||+||||||++..|+.. .+..+|++|.+
T Consensus 41 ~~g~iivIiGPTGSGKStLA~~LA~~-------l~~eIIsaDs~ 77 (334)
T PLN02165 41 CKDKVVVIMGATGSGKSRLSVDLATR-------FPSEIINSDKM 77 (334)
T ss_pred CCCCEEEEECCCCCcHHHHHHHHHHH-------cCCceecCChh
Confidence 34558999999999999999999887 35578999987
No 164
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=97.35 E-value=0.00081 Score=68.89 Aligned_cols=40 Identities=28% Similarity=0.459 Sum_probs=32.1
Q ss_pred EEEEecCCCCchHHHHHHHhcCcccccCCCCeEEeccccccc
Q 044777 217 LLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADAFKE 258 (513)
Q Consensus 217 LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDefR~ 258 (513)
+|.++|++||||||+++.+.+. +...+.++.+|+.|.+..
T Consensus 1 IIgItG~SGSGKTTv~~~l~~~--l~~~g~~v~vI~~D~yyr 40 (277)
T cd02029 1 VIAVTGSSGAGTTTVKRAFEHI--FAREGIHPAVVEGDSFHR 40 (277)
T ss_pred CEEEECCCCCCHHHHHHHHHHH--HHhcCCceEEEecccccc
Confidence 4678999999999999999875 333345688999999954
No 165
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.33 E-value=0.0003 Score=59.24 Aligned_cols=42 Identities=21% Similarity=0.400 Sum_probs=32.1
Q ss_pred cEEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEeccccccc
Q 044777 215 PVLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADAFKE 258 (513)
Q Consensus 215 P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDefR~ 258 (513)
+..+++.|+||+||||+++.++.... ....+.++++++....
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~--~~~~~~~~~~~~~~~~ 43 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELG--PPGGGVIYIDGEDILE 43 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccC--CCCCCEEEECCEEccc
Confidence 45789999999999999999998732 1112578888888754
No 166
>PLN02772 guanylate kinase
Probab=97.32 E-value=0.0012 Score=70.83 Aligned_cols=37 Identities=30% Similarity=0.432 Sum_probs=27.8
Q ss_pred chhccccc-CCCCCcEEEEEecCCCCchHHHHHHHhcC
Q 044777 202 TEVMAPVA-LGDRSPVLLFMGGGMGAGKSTVLKDILKE 238 (513)
Q Consensus 202 ~~vl~p~~-~~~~~P~LILmaG~pGAGKSTla~~Ll~~ 238 (513)
+||..+.. .+.....+++++||+|+||||+++.|.+.
T Consensus 121 ~eV~~~~~~~~~~~~k~iVlsGPSGvGKsTL~~~L~~~ 158 (398)
T PLN02772 121 TEVVAWSKGVRGNAEKPIVISGPSGVGKGTLISMLMKE 158 (398)
T ss_pred ceeeecccCCCCCCCcEEEEECCCCCCHHHHHHHHhhh
Confidence 45555443 23445678999999999999999999775
No 167
>PRK07933 thymidylate kinase; Validated
Probab=97.32 E-value=0.0051 Score=60.18 Aligned_cols=33 Identities=21% Similarity=0.323 Sum_probs=24.7
Q ss_pred EEEEecCCCCchHHHHHHHhcCcccccCCCCeEEe
Q 044777 217 LLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVI 251 (513)
Q Consensus 217 LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvI 251 (513)
+|.+.|+-||||||+++.|.+. +...+.+++++
T Consensus 2 ~IviEG~dGsGKST~~~~L~~~--L~~~g~~v~~~ 34 (213)
T PRK07933 2 LIAIEGVDGAGKRTLTEALRAA--LEARGRSVATL 34 (213)
T ss_pred EEEEEcCCCCCHHHHHHHHHHH--HHHCCCeEEEE
Confidence 6899999999999999999886 33333444433
No 168
>COG0125 Tmk Thymidylate kinase [Nucleotide transport and metabolism]
Probab=97.27 E-value=0.0091 Score=58.85 Aligned_cols=87 Identities=22% Similarity=0.272 Sum_probs=48.5
Q ss_pred CcEEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEe-cc------cccccchhhhhhhhccccCchhhHHHHHhHhHH
Q 044777 214 SPVLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVI-EA------DAFKESDVIYRALSSRSHVDMLQTAELVHQSST 286 (513)
Q Consensus 214 ~P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvI-na------DefR~~~p~y~~l~~~G~~Dp~qaae~v~~eAt 286 (513)
++.+|.+-|.=||||||.++.|.+. ....+..+++. .| ..+|+.. ++.....+|...+-+. .+.
T Consensus 2 ~g~fI~iEGiDGaGKTT~~~~L~~~--l~~~g~~v~~trEP~~~~ige~iR~~l-----l~~~~~~~~~~e~lLf--aad 72 (208)
T COG0125 2 KGMFIVIEGIDGAGKTTQAELLKER--LEERGIKVVLTREPGGTPIGEKIRELL-----LNGEEKLSPKAEALLF--AAD 72 (208)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHH--HHHcCCeEEEEeCCCCChHHHHHHHHH-----cCCccCCCHHHHHHHH--HHH
Confidence 5679999999999999999998775 33333333332 11 1122110 1100011332222222 222
Q ss_pred H--HHHHHHHHHHHCCCcEEEECcC
Q 044777 287 D--AASSLLVTALNEGRDVIMDGTL 309 (513)
Q Consensus 287 r--lA~~li~~aL~~GrsVIlDtTl 309 (513)
+ -....+..++.+|.-||.|=-+
T Consensus 73 R~~h~~~~i~pal~~g~vVI~DRy~ 97 (208)
T COG0125 73 RAQHLEEVIKPALKEGKVVICDRYV 97 (208)
T ss_pred HHHHHHHHHHHhhcCCCEEEECCcc
Confidence 2 2556678999999999999544
No 169
>PRK11860 bifunctional 3-phosphoshikimate 1-carboxyvinyltransferase/cytidine monophosphate kinase; Provisional
Probab=97.24 E-value=0.0047 Score=69.98 Aligned_cols=33 Identities=18% Similarity=0.320 Sum_probs=29.8
Q ss_pred EEEEecCCCCchHHHHHHHhcCcccccCCCCeEEeccccc
Q 044777 217 LLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADAF 256 (513)
Q Consensus 217 LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDef 256 (513)
.|.+-||+||||||+++.|++. .+..++++|.+
T Consensus 444 ~i~i~g~~~~gks~~~~~l~~~-------~~~~~~~~~~~ 476 (661)
T PRK11860 444 VICIDGPTASGKGTVAARVAEA-------LGYHYLDSGAL 476 (661)
T ss_pred eEEeeCCCCCCHHHHHHHHHHH-------hCCeEecHHHh
Confidence 6888999999999999999998 57778999987
No 170
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=97.20 E-value=0.0037 Score=60.36 Aligned_cols=136 Identities=21% Similarity=0.197 Sum_probs=79.3
Q ss_pred EEEEecCCCCchHHHHHHHhcCcccccCCCCeEEecccccccchhhhhhhhcc-ccCchhhHHHHHhHhHHHHHHHHHHH
Q 044777 217 LLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADAFKESDVIYRALSSR-SHVDMLQTAELVHQSSTDAASSLLVT 295 (513)
Q Consensus 217 LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDefR~~~p~y~~l~~~-G~~Dp~qaae~v~~eAtrlA~~li~~ 295 (513)
+|+++|.||.||||+++.|..- +.+.+.++ |..++ .+.|.+.... +.++ +.. +.....++.
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~~l------g~~~i~l~-el~~e-~~~~~~~de~r~s~~-------vD~---d~~~~~le~ 63 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLREL------GYKVIELN-ELAKE-NGLYTEYDELRKSVI-------VDV---DKLRKRLEE 63 (180)
T ss_pred eEEEeCCCCCchHHHHHHHHHh------CCceeeHH-HHHHh-cCCeeccCCccceEE-------eeH---HHHHHHHHH
Confidence 5889999999999999999843 24455555 44433 2222221110 0010 000 111222333
Q ss_pred HHHCCCcEEEECcCCChHHHHHHHHHHhhhhhcccccccccccccCCccccchhhhhhhhhhhhcccCCCCeEEEEEEE-
Q 044777 296 ALNEGRDVIMDGTLSWVPFVVQTITMARNVHRHRYRMGVGYKKAEDGTVIENYWDRIGEREQAQDGKMRKPYRIELVGV- 374 (513)
Q Consensus 296 aL~~GrsVIlDtTlS~~~~~~qii~~Ar~~h~~~y~~g~GYkv~~~g~~~e~Yw~~v~~a~~~~~~~~~~gYrI~Lv~V- 374 (513)
.+ ...+.|+|+-+++- +. .+.|++|
T Consensus 64 ~~-~~~~~Ivd~H~~hl---------------------------------------~~--------------~~dlVvVL 89 (180)
T COG1936 64 LL-REGSGIVDSHLSHL---------------------------------------LP--------------DCDLVVVL 89 (180)
T ss_pred Hh-ccCCeEeechhhhc---------------------------------------CC--------------CCCEEEEE
Confidence 33 45689999887661 00 1346776
Q ss_pred ecChHHHHHHHHHHHHhcCCcCchhHHHHHH-HHHHH-HHHHhhcccceEEEEecCCC
Q 044777 375 VCDAYLAVVRGIRRAIMCRRAVRVKSQLKSH-KRFAN-AFLTYCQLVDSARLYSTNAL 430 (513)
Q Consensus 375 ~~dpelAv~Rv~~Rv~~gGh~VP~~~il~r~-~rf~~-nf~~~~~lvD~a~lyDNs~~ 430 (513)
-|+|+.-..|.. ||.-|+++|..-- ..... -+..+....|.++.+|+...
T Consensus 90 R~~p~~L~~RLk------~RGy~~eKI~ENveAEi~~vi~~EA~E~~~~v~evdtt~~ 141 (180)
T COG1936 90 RADPEVLYERLK------GRGYSEEKILENVEAEILDVILIEAVERFEAVIEVDTTNR 141 (180)
T ss_pred cCCHHHHHHHHH------HcCCCHHHHHHHHHHHHHHHHHHHHHHhcCceEEEECCCC
Confidence 489999988888 5567788775322 22222 23445555699999998774
No 171
>PLN02840 tRNA dimethylallyltransferase
Probab=97.20 E-value=0.00094 Score=72.09 Aligned_cols=44 Identities=27% Similarity=0.382 Sum_probs=35.4
Q ss_pred ccccCCCCCcEEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEeccccc
Q 044777 206 APVALGDRSPVLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADAF 256 (513)
Q Consensus 206 ~p~~~~~~~P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDef 256 (513)
.|.++...++.+++|+||+||||||++..|++. .+..+|++|.+
T Consensus 12 ~~~~~~~~~~~vi~I~GptgsGKTtla~~La~~-------~~~~iis~Ds~ 55 (421)
T PLN02840 12 GSGASKTKKEKVIVISGPTGAGKSRLALELAKR-------LNGEIISADSV 55 (421)
T ss_pred CCccccccCCeEEEEECCCCCCHHHHHHHHHHH-------CCCCeEecccc
Confidence 444555667789999999999999999999987 34567888875
No 172
>PLN02842 nucleotide kinase
Probab=97.16 E-value=0.004 Score=68.69 Aligned_cols=31 Identities=23% Similarity=0.295 Sum_probs=25.5
Q ss_pred EEecCCCCchHHHHHHHhcCcccccCCCCeEEeccccc
Q 044777 219 FMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADAF 256 (513)
Q Consensus 219 LmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDef 256 (513)
+|.|+|||||||.++.|++. .+..+|+++++
T Consensus 1 ~I~G~PGSGKSTqa~~Lak~-------lg~~hIs~gdL 31 (505)
T PLN02842 1 MISGAPASGKGTQCELIVHK-------FGLVHISTGDL 31 (505)
T ss_pred CeeCCCCCCHHHHHHHHHHH-------hCCCEEEccHH
Confidence 57899999999999999986 36678876654
No 173
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.16 E-value=0.0024 Score=69.05 Aligned_cols=45 Identities=16% Similarity=0.284 Sum_probs=31.8
Q ss_pred CCcEEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEecccccc
Q 044777 213 RSPVLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADAFK 257 (513)
Q Consensus 213 ~~P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDefR 257 (513)
..+.++.+.|+||+||||++..|+............-+|..|.+|
T Consensus 189 ~~g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~r 233 (420)
T PRK14721 189 EQGGVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYR 233 (420)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcc
Confidence 356799999999999999999887631000111344577888887
No 174
>PF03668 ATP_bind_2: P-loop ATPase protein family; InterPro: IPR005337 This entry represents UPF0042 nucleotide-binding proteins. This is a family of putative P-loop ATPases [], as they contain an ATP-binding site and display ATPase and GTPase activities.; GO: 0005524 ATP binding
Probab=97.14 E-value=0.012 Score=60.63 Aligned_cols=62 Identities=18% Similarity=0.155 Sum_probs=44.7
Q ss_pred CCCCeEEEEEEEecChHHHHHHHHHHHHhcCCcCchhH---HHHHHHHHHHHHHHhhcccceEEEEecCCC
Q 044777 363 MRKPYRIELVGVVCDAYLAVVRGIRRAIMCRRAVRVKS---QLKSHKRFANAFLTYCQLVDSARLYSTNAL 430 (513)
Q Consensus 363 ~~~gYrI~Lv~V~~dpelAv~Rv~~Rv~~gGh~VP~~~---il~r~~rf~~nf~~~~~lvD~a~lyDNs~~ 430 (513)
++.|..+.++|..++.+.- ++|..++.|.=|... ++...+.-.+.+......+|. +.|||..
T Consensus 77 ~~~~~~~~ilFLdA~d~~L----irRy~eTRR~HPL~~~~~~le~I~~Er~~L~~lr~~Ad~--vIDTs~l 141 (284)
T PF03668_consen 77 RKKGIDVRILFLDASDEVL----IRRYSETRRRHPLSSDGSLLEAIEKERELLEPLRERADL--VIDTSNL 141 (284)
T ss_pred HhcCCceEEEEEECChHHH----HHHHHhccCCCCCCCCCCcHHHHHHHHHHHHHHHHhCCE--EEECCCC
Confidence 4458899999999988865 456777777666543 345556666677777788885 6788887
No 175
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=97.12 E-value=0.00056 Score=71.70 Aligned_cols=53 Identities=17% Similarity=0.232 Sum_probs=41.1
Q ss_pred cchhcccccCCCCCcEEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEecccc
Q 044777 201 CTEVMAPVALGDRSPVLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADA 255 (513)
Q Consensus 201 ~~~vl~p~~~~~~~P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDe 255 (513)
+.+++....+....|.+|-+.|+|||||||++..+... +...+.++.+|+.|-
T Consensus 42 ~~~l~~~~~~~~~~~~~igi~G~~GaGKSTl~~~l~~~--l~~~g~~v~vi~~Dp 94 (332)
T PRK09435 42 AQELLDALLPHTGNALRIGITGVPGVGKSTFIEALGMH--LIEQGHKVAVLAVDP 94 (332)
T ss_pred HHHHHHHHhhcCCCcEEEEEECCCCCCHHHHHHHHHHH--HHHCCCeEEEEEeCC
Confidence 56777776655678999999999999999999998775 444455677776664
No 176
>COG3896 Chloramphenicol 3-O-phosphotransferase [Defense mechanisms]
Probab=97.09 E-value=0.004 Score=59.76 Aligned_cols=127 Identities=21% Similarity=0.242 Sum_probs=80.9
Q ss_pred CcEEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEecccccccchhhhhhhhccc-cC------chh-----hHHHHH
Q 044777 214 SPVLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADAFKESDVIYRALSSRS-HV------DML-----QTAELV 281 (513)
Q Consensus 214 ~P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDefR~~~p~y~~l~~~G-~~------Dp~-----qaae~v 281 (513)
...++++-|.+-||||+++.++-.- ....+.+|--|.|-+.+|.-......| .+ |.+ ..+...
T Consensus 22 ~griVlLNG~~saGKSSiA~A~Q~~-----~a~pwmhigiD~f~e~lpp~~~d~a~g~~~~~~v~~dg~~~v~v~~gpi~ 96 (205)
T COG3896 22 EGRIVLLNGGSSAGKSSIALAFQDL-----AAEPWMHIGIDLFWEALPPEQLDLARGYTWDSAVEADGLEWVTVHPGPIL 96 (205)
T ss_pred CceEEEecCCCccchhHHHHHHHHH-----hhcchhhhhHHHHHHhCCHHhhccccccccccccccCCceeeEeechhHH
Confidence 4579999999999999999998664 135667888898876665322222212 11 100 001111
Q ss_pred hHhHHHHHHHHHHHHHHCCCcEEEECcCCChHHHHHHHHHHhhhhhcccccccccccccCCccccchhhhhhhhhhhhcc
Q 044777 282 HQSSTDAASSLLVTALNEGRDVIMDGTLSWVPFVVQTITMARNVHRHRYRMGVGYKKAEDGTVIENYWDRIGEREQAQDG 361 (513)
Q Consensus 282 ~~eAtrlA~~li~~aL~~GrsVIlDtTlS~~~~~~qii~~Ar~~h~~~y~~g~GYkv~~~g~~~e~Yw~~v~~a~~~~~~ 361 (513)
+.+..-....+..-..+|.|+|.|...-++.++-...+.+
T Consensus 97 -e~~~~~~r~ai~a~ad~G~~~i~Ddv~~~r~~L~Dc~r~l--------------------------------------- 136 (205)
T COG3896 97 -ELAMHSRRRAIRAYADNGMNVIADDVIWTREWLVDCLRVL--------------------------------------- 136 (205)
T ss_pred -HHHHHHHHHHHHHHhccCcceeehhcccchhhHHHHHHHH---------------------------------------
Confidence 1111111123456678999999999999887766444422
Q ss_pred cCCCCeEEEEEEEecChHHHHHHHHHH
Q 044777 362 KMRKPYRIELVGVVCDAYLAVVRGIRR 388 (513)
Q Consensus 362 ~~~~gYrI~Lv~V~~dpelAv~Rv~~R 388 (513)
.|++|.+++|.|+.|.-.+|-.+|
T Consensus 137 ---~g~~v~~VGV~~p~E~~~~Re~rr 160 (205)
T COG3896 137 ---EGCRVWMVGVHVPDEEGARRELRR 160 (205)
T ss_pred ---hCCceEEEEeeccHHHHHHHHhhc
Confidence 578899999999888776666554
No 177
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.05 E-value=0.0012 Score=57.11 Aligned_cols=34 Identities=18% Similarity=0.334 Sum_probs=27.6
Q ss_pred EEEecCCCCchHHHHHHHhcCcccccCCCCeEEeccccc
Q 044777 218 LFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADAF 256 (513)
Q Consensus 218 ILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDef 256 (513)
+++.||||+||||+++.++... +.+.+.+++..+
T Consensus 1 ill~G~~G~GKT~l~~~la~~l-----~~~~~~i~~~~~ 34 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYL-----GFPFIEIDGSEL 34 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHT-----TSEEEEEETTHH
T ss_pred CEEECcCCCCeeHHHHHHHhhc-----cccccccccccc
Confidence 6899999999999999999871 345566777777
No 178
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=97.02 E-value=0.00066 Score=69.92 Aligned_cols=45 Identities=22% Similarity=0.408 Sum_probs=32.7
Q ss_pred CCCcEEEEEecCCCCchHHHHHHHhcCc-ccccCCCCeEEecccccc
Q 044777 212 DRSPVLLFMGGGMGAGKSTVLKDILKEP-FWAGAAGNAVVIEADAFK 257 (513)
Q Consensus 212 ~~~P~LILmaG~pGAGKSTla~~Ll~~~-f~~~~~~~aVvInaDefR 257 (513)
...|.+|-|+|+|||||||+++.|.... -|. ..+.+.+|.-|.|-
T Consensus 59 ~~~p~IIGIaG~~GSGKSTlar~L~~ll~~~~-~~g~V~vi~~D~f~ 104 (290)
T TIGR00554 59 AKIPYIISIAGSVAVGKSTTARILQALLSRWP-EHRKVELITTDGFL 104 (290)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHhhcC-CCCceEEEeccccc
Confidence 3578999999999999999998764320 022 12467788888874
No 179
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=97.01 E-value=0.00093 Score=68.39 Aligned_cols=54 Identities=22% Similarity=0.209 Sum_probs=40.2
Q ss_pred cchhcccccCCCCCcEEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEeccccc
Q 044777 201 CTEVMAPVALGDRSPVLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADAF 256 (513)
Q Consensus 201 ~~~vl~p~~~~~~~P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDef 256 (513)
+.+++..+......+.++.+.|+|||||||++..+... ....+..+.+|+.|..
T Consensus 20 ~~~~~~~~~~~~~~~~~i~i~G~~G~GKttl~~~l~~~--~~~~~~~v~~i~~D~~ 73 (300)
T TIGR00750 20 AKQLLDRIMPYTGNAHRVGITGTPGAGKSTLLEALGME--LRRRGLKVAVIAVDPS 73 (300)
T ss_pred HHHHHHhCCcccCCceEEEEECCCCCCHHHHHHHHHHH--HHHCCCeEEEEecCCC
Confidence 45667666666677889999999999999999998764 2233456667787744
No 180
>PRK15453 phosphoribulokinase; Provisional
Probab=96.98 E-value=0.00069 Score=69.82 Aligned_cols=44 Identities=30% Similarity=0.425 Sum_probs=35.1
Q ss_pred CCcEEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEeccccccc
Q 044777 213 RSPVLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADAFKE 258 (513)
Q Consensus 213 ~~P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDefR~ 258 (513)
.++.+|.++|.+||||||+++.+... +...+.++++|+.|.+-.
T Consensus 3 ~k~piI~ItG~SGsGKTTva~~l~~i--f~~~~~~~~vi~~D~yh~ 46 (290)
T PRK15453 3 AKHPIIAVTGSSGAGTTTVKRAFEKI--FRRENINAAVVEGDSFHR 46 (290)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHH--HhhcCCCeEEEecccccc
Confidence 35678999999999999999999864 333345688999999954
No 181
>PRK05439 pantothenate kinase; Provisional
Probab=96.98 E-value=0.0013 Score=68.37 Aligned_cols=46 Identities=22% Similarity=0.443 Sum_probs=35.0
Q ss_pred CCCCcEEEEEecCCCCchHHHHHHHhcCcc-cccCCCCeEEecccccc
Q 044777 211 GDRSPVLLFMGGGMGAGKSTVLKDILKEPF-WAGAAGNAVVIEADAFK 257 (513)
Q Consensus 211 ~~~~P~LILmaG~pGAGKSTla~~Ll~~~f-~~~~~~~aVvInaDefR 257 (513)
....|.+|.|+|+|||||||+++.|....- |. .+..+.+|.-|.|-
T Consensus 82 ~~~~~~iIgIaG~~gsGKSTla~~L~~~l~~~~-~~~~v~vi~~DdFy 128 (311)
T PRK05439 82 GQKVPFIIGIAGSVAVGKSTTARLLQALLSRWP-EHPKVELVTTDGFL 128 (311)
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHHHHhhC-CCCceEEEeccccc
Confidence 356899999999999999999998876310 11 13467789999983
No 182
>PLN02748 tRNA dimethylallyltransferase
Probab=96.97 E-value=0.0022 Score=70.14 Aligned_cols=88 Identities=22% Similarity=0.246 Sum_probs=53.2
Q ss_pred CCCcEEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEeccccc---ccchhh------hhhhhccccC-----chhhH
Q 044777 212 DRSPVLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADAF---KESDVI------YRALSSRSHV-----DMLQT 277 (513)
Q Consensus 212 ~~~P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDef---R~~~p~------y~~l~~~G~~-----Dp~qa 277 (513)
..++.+|+|.||+||||||++..|+.. .+..+||+|.+ |. +++ ..+....-|+ +|.+
T Consensus 19 ~~~~~~i~i~GptgsGKs~la~~la~~-------~~~eii~~DsmQVYrg-LdIgTaKpt~eE~~~VpHHLid~v~p~e- 89 (468)
T PLN02748 19 KGKAKVVVVMGPTGSGKSKLAVDLASH-------FPVEIINADSMQVYSG-LDVLTNKVPLHEQKGVPHHLLGVISPSV- 89 (468)
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHh-------cCeeEEcCchheeeCC-cchhcCCCCHHHHcCCCCeeEeecCCCC-
Confidence 345679999999999999999999987 46789999963 31 111 0111110011 2321
Q ss_pred HHHHhHhHHHHHHHHHHHHHHCCC-cEEEECcC
Q 044777 278 AELVHQSSTDAASSLLVTALNEGR-DVIMDGTL 309 (513)
Q Consensus 278 ae~v~~eAtrlA~~li~~aL~~Gr-sVIlDtTl 309 (513)
++....-.+.|...++....+|. .||+=||.
T Consensus 90 -~ysv~~F~~~A~~~I~~I~~rgk~PIlVGGTg 121 (468)
T PLN02748 90 -EFTAKDFRDHAVPLIEEILSRNGLPVIVGGTN 121 (468)
T ss_pred -cCcHHHHHHHHHHHHHHHHhcCCCeEEEcChH
Confidence 12111122456667777777776 77777763
No 183
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=96.91 E-value=0.00064 Score=66.85 Aligned_cols=39 Identities=23% Similarity=0.333 Sum_probs=29.5
Q ss_pred EEEEecCCCCchHHHHHHHhcCccccc--CCCCeEEecccccc
Q 044777 217 LLFMGGGMGAGKSTVLKDILKEPFWAG--AAGNAVVIEADAFK 257 (513)
Q Consensus 217 LILmaG~pGAGKSTla~~Ll~~~f~~~--~~~~aVvInaDefR 257 (513)
++-++|+|||||||+++.|... ... .+..+.+|.-|.|-
T Consensus 1 IigI~G~sGSGKTTla~~L~~~--l~~~~~~~~v~vi~~D~f~ 41 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQAL--LSRWPDHPNVELITTDGFL 41 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHH--HhhcCCCCcEEEEecCccc
Confidence 4678999999999999999865 211 23467788889883
No 184
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=96.87 E-value=0.0058 Score=64.01 Aligned_cols=135 Identities=13% Similarity=0.073 Sum_probs=80.6
Q ss_pred CcEEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEe-ccccccc-chhhhhhhhccccCchhhHHHHHhHhHHHHHHH
Q 044777 214 SPVLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVI-EADAFKE-SDVIYRALSSRSHVDMLQTAELVHQSSTDAASS 291 (513)
Q Consensus 214 ~P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvI-naDefR~-~~p~y~~l~~~G~~Dp~qaae~v~~eAtrlA~~ 291 (513)
....++++|++||||||+.+.|+.. ++. ....+.| ++.++.- .+|..-.+... .. . .....--+..
T Consensus 159 ~~~nili~G~tgSGKTTll~aL~~~--ip~-~~ri~tiEd~~El~l~~~~n~~~~~~~-~~------~--~~~~~~~~~~ 226 (332)
T PRK13900 159 SKKNIIISGGTSTGKTTFTNAALRE--IPA-IERLITVEDAREIVLSNHPNRVHLLAS-KG------G--QGRAKVTTQD 226 (332)
T ss_pred cCCcEEEECCCCCCHHHHHHHHHhh--CCC-CCeEEEecCCCccccccCCCEEEEEec-CC------C--CCcCcCcHHH
Confidence 3457899999999999999999886 432 2344444 3334421 12211111000 00 0 0000112346
Q ss_pred HHHHHHHCCCcEEEECcCCChHHHHHHHHHHhhhhhcccccccccccccCCccccchhhhhhhhhhhhcccCCCCeEEEE
Q 044777 292 LLVTALNEGRDVIMDGTLSWVPFVVQTITMARNVHRHRYRMGVGYKKAEDGTVIENYWDRIGEREQAQDGKMRKPYRIEL 371 (513)
Q Consensus 292 li~~aL~~GrsVIlDtTlS~~~~~~qii~~Ar~~h~~~y~~g~GYkv~~~g~~~e~Yw~~v~~a~~~~~~~~~~gYrI~L 371 (513)
++..+|...-+.|+=+-.++.+-.. +++.+ ..|..-.+
T Consensus 227 ll~~~LR~~PD~IivGEiR~~ea~~-~l~a~-----------------------------------------~tGh~G~~ 264 (332)
T PRK13900 227 LIEACLRLRPDRIIVGELRGAEAFS-FLRAI-----------------------------------------NTGHPGSI 264 (332)
T ss_pred HHHHHhccCCCeEEEEecCCHHHHH-HHHHH-----------------------------------------HcCCCcEE
Confidence 7889999999999999999876443 23322 11221123
Q ss_pred EEEe-cChHHHHHHHHHHHHhcCCcCchhHHH
Q 044777 372 VGVV-CDAYLAVVRGIRRAIMCRRAVRVKSQL 402 (513)
Q Consensus 372 v~V~-~dpelAv~Rv~~Rv~~gGh~VP~~~il 402 (513)
.-++ .++.-++.|....+..+|..+|.+.+.
T Consensus 265 tTiHa~s~~~ai~Rl~~~~~~~~~~~~~~~~~ 296 (332)
T PRK13900 265 STLHADSPAMAIEQLKLMVMQAGLGMPPDQIK 296 (332)
T ss_pred EEEecCCHHHHHHHHHHHHHhccCCCCHHHHH
Confidence 3344 489999999999999988888776553
No 185
>PRK13976 thymidylate kinase; Provisional
Probab=96.85 E-value=0.017 Score=56.65 Aligned_cols=22 Identities=23% Similarity=0.292 Sum_probs=20.3
Q ss_pred EEEEecCCCCchHHHHHHHhcC
Q 044777 217 LLFMGGGMGAGKSTVLKDILKE 238 (513)
Q Consensus 217 LILmaG~pGAGKSTla~~Ll~~ 238 (513)
+|.+-|.-||||||.++.|.+.
T Consensus 2 fIv~EGiDGsGKsTq~~~L~~~ 23 (209)
T PRK13976 2 FITFEGIDGSGKTTQSRLLAEY 23 (209)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 7899999999999999999875
No 186
>KOG3220 consensus Similar to bacterial dephospho-CoA kinase [Coenzyme transport and metabolism]
Probab=96.81 E-value=0.0071 Score=59.84 Aligned_cols=34 Identities=32% Similarity=0.409 Sum_probs=28.5
Q ss_pred EEEEecCCCCchHHHHHHHhcCcccccCCCCeEEeccccccc
Q 044777 217 LLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADAFKE 258 (513)
Q Consensus 217 LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDefR~ 258 (513)
++=+.|..||||||+++.+-+ .++.+||+|.+..
T Consensus 3 iVGLTGgiatGKStVs~~f~~--------~G~~vIDaD~vaR 36 (225)
T KOG3220|consen 3 IVGLTGGIATGKSTVSQVFKA--------LGIPVIDADVVAR 36 (225)
T ss_pred EEEeecccccChHHHHHHHHH--------cCCcEecHHHHHH
Confidence 566889999999999998875 3678999999853
No 187
>PF01745 IPT: Isopentenyl transferase; InterPro: IPR002648 Isopentenyl transferase / dimethylallyl transferase synthesizes isopentenyladensosine 5'-monophosphate, a cytokinin that induces shoot formation on host plants infected with the Ti plasmid [].; GO: 0004161 dimethylallyltranstransferase activity, 0009058 biosynthetic process; PDB: 2ZE8_C 2ZE5_A 2ZE7_A 2ZE6_A.
Probab=96.80 E-value=0.0086 Score=59.80 Aligned_cols=123 Identities=20% Similarity=0.311 Sum_probs=65.7
Q ss_pred EEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEecccccccchhhhhhhhc-cc------------cC-c--hhhHHH
Q 044777 216 VLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADAFKESDVIYRALSS-RS------------HV-D--MLQTAE 279 (513)
Q Consensus 216 ~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDefR~~~p~y~~l~~-~G------------~~-D--p~qaae 279 (513)
.++++.||.|+|||.++-.+++. .++.+|+.|-+-- |.++.- .| .| + +.....
T Consensus 2 ~v~~i~GpT~tGKt~~ai~lA~~-------~g~pvI~~Driq~----y~~l~v~Sgrp~~~el~~~~RiyL~~r~l~~G~ 70 (233)
T PF01745_consen 2 KVYLIVGPTGTGKTALAIALAQK-------TGAPVISLDRIQC----YPELSVGSGRPTPSELKGTRRIYLDDRPLSDGI 70 (233)
T ss_dssp EEEEEE-STTSSHHHHHHHHHHH-------H--EEEEE-SGGG-----GGGTTTTT---SGGGTT-EEEES----GGG-S
T ss_pred cEEEEECCCCCChhHHHHHHHHH-------hCCCEEEecceec----ccccccccCCCCHHHHcccceeeeccccccCCC
Confidence 47899999999999999999997 4778999998831 221111 01 11 1 111111
Q ss_pred HHhHhHHHHHHHHHHHHHHCCCcEEEECcCCChHHHHHHHHHHhhhhhcccccccccccccCCccccchhhhhhhhhhhh
Q 044777 280 LVHQSSTDAASSLLVTALNEGRDVIMDGTLSWVPFVVQTITMARNVHRHRYRMGVGYKKAEDGTVIENYWDRIGEREQAQ 359 (513)
Q Consensus 280 ~v~~eAtrlA~~li~~aL~~GrsVIlDtTlS~~~~~~qii~~Ar~~h~~~y~~g~GYkv~~~g~~~e~Yw~~v~~a~~~~ 359 (513)
+...++.+.....+... ..+..+|+|+.= -+.+. .|+++ .||
T Consensus 71 i~a~ea~~~Li~~v~~~-~~~~~~IlEGGS--ISLl~---~m~~~----------------------~~w---------- 112 (233)
T PF01745_consen 71 INAEEAHERLISEVNSY-SAHGGLILEGGS--ISLLN---CMAQD----------------------PYW---------- 112 (233)
T ss_dssp --HHHHHHHHHHHHHTT-TTSSEEEEEE----HHHHH---HHHH-----------------------TTT----------
T ss_pred cCHHHHHHHHHHHHHhc-cccCceEEeCch--HHHHH---HHHhc----------------------ccc----------
Confidence 12223333322223322 347799999742 33333 33432 355
Q ss_pred cccCCCCeEEEEEEEe-cChHHHHHHHHHHHHh
Q 044777 360 DGKMRKPYRIELVGVV-CDAYLAVVRGIRRAIM 391 (513)
Q Consensus 360 ~~~~~~gYrI~Lv~V~-~dpelAv~Rv~~Rv~~ 391 (513)
..+|+..+..+. .|++.=+.|..+||..
T Consensus 113 ----~~~f~w~i~rl~l~d~~~f~~ra~~Rv~~ 141 (233)
T PF01745_consen 113 ----SLDFRWHIRRLRLPDEEVFMARAKRRVRQ 141 (233)
T ss_dssp ----SSSSEEEEEE-----HHHHHHHHHHHHHH
T ss_pred ----cCCCeEEEEEEECCChHHHHHHHHHHHHH
Confidence 267888887774 6888888999999854
No 188
>PLN02199 shikimate kinase
Probab=96.75 E-value=0.013 Score=60.89 Aligned_cols=37 Identities=30% Similarity=0.338 Sum_probs=31.1
Q ss_pred cEEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEeccccccc
Q 044777 215 PVLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADAFKE 258 (513)
Q Consensus 215 P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDefR~ 258 (513)
..-|++.|.+||||||+.+.|++. .++.+||+|.+-+
T Consensus 102 ~~~I~LIG~~GSGKSTVgr~LA~~-------Lg~~fIDtD~lIe 138 (303)
T PLN02199 102 GRSMYLVGMMGSGKTTVGKLMSKV-------LGYTFFDCDTLIE 138 (303)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH-------hCCCEEehHHHHH
Confidence 346788999999999999999986 4677999998744
No 189
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.74 E-value=0.0084 Score=68.20 Aligned_cols=56 Identities=21% Similarity=0.328 Sum_probs=46.1
Q ss_pred HHHHHhHHHHhhhhhhHHHHHHHHHHHHHHHhcCCCCCCcccchhcccccCCCCCcEEEEEecCCCCchHHHHHHHhcCc
Q 044777 160 MQATREQRFERVTKNLKVARVFTTLVEEMKAMGLAPNDDSQCTEVMAPVALGDRSPVLLFMGGGMGAGKSTVLKDILKEP 239 (513)
Q Consensus 160 ~~a~r~~rf~r~~~~~~v~r~~~~~ve~~~~~~~~~~~~~~~~~vl~p~~~~~~~P~LILmaG~pGAGKSTla~~Ll~~~ 239 (513)
-+..|=++|+.++....+++.|...++ ..+-|..+|+.|++|.||||+++.+++..
T Consensus 6 arKyRPktFddVIGQe~vv~~L~~aI~------------------------~grl~HAyLF~GPpGvGKTTlAriLAK~L 61 (702)
T PRK14960 6 ARKYRPRNFNELVGQNHVSRALSSALE------------------------RGRLHHAYLFTGTRGVGKTTIARILAKCL 61 (702)
T ss_pred HHHhCCCCHHHhcCcHHHHHHHHHHHH------------------------cCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 344566799999999999999888882 23457899999999999999999998863
No 190
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=96.65 E-value=0.0013 Score=53.20 Aligned_cols=33 Identities=33% Similarity=0.624 Sum_probs=24.3
Q ss_pred EEEEecCCCCchHHHHHHHhcCcccccCCCCeEEecc
Q 044777 217 LLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEA 253 (513)
Q Consensus 217 LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvIna 253 (513)
++.++|+|||||||+++.|.+. + .+.+..+++.
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~--l--~~~~~~~i~~ 33 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQ--L--GGRSVVVLDE 33 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHH--h--cCCCEEEEeE
Confidence 3678999999999999999886 2 1245555544
No 191
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=96.64 E-value=0.0086 Score=65.44 Aligned_cols=73 Identities=23% Similarity=0.292 Sum_probs=49.1
Q ss_pred HHHHhhhhhhHHHHHHHHHHHHHHHhcCCCCCCcccchhcccccCCCCCcEEEEEecCCCCchHHHHHHHhcCcccccCC
Q 044777 166 QRFERVTKNLKVARVFTTLVEEMKAMGLAPNDDSQCTEVMAPVALGDRSPVLLFMGGGMGAGKSTVLKDILKEPFWAGAA 245 (513)
Q Consensus 166 ~rf~r~~~~~~v~r~~~~~ve~~~~~~~~~~~~~~~~~vl~p~~~~~~~P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~ 245 (513)
-+|+.+.....++..+.++++-++.-.. ... .....|.-+++.||||+|||++++.++.+ .+
T Consensus 52 ~~~~di~g~~~~k~~l~~~~~~l~~~~~-------~~~------~g~~~~~giLL~GppGtGKT~la~alA~~-----~~ 113 (495)
T TIGR01241 52 VTFKDVAGIDEAKEELMEIVDFLKNPSK-------FTK------LGAKIPKGVLLVGPPGTGKTLLAKAVAGE-----AG 113 (495)
T ss_pred CCHHHhCCHHHHHHHHHHHHHHHHCHHH-------HHh------cCCCCCCcEEEECCCCCCHHHHHHHHHHH-----cC
Confidence 4888888888888888877754332110 000 01234566899999999999999999886 23
Q ss_pred CCeEEeccccc
Q 044777 246 GNAVVIEADAF 256 (513)
Q Consensus 246 ~~aVvInaDef 256 (513)
.+++.+++..|
T Consensus 114 ~~~~~i~~~~~ 124 (495)
T TIGR01241 114 VPFFSISGSDF 124 (495)
T ss_pred CCeeeccHHHH
Confidence 45566666665
No 192
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=96.64 E-value=0.0028 Score=64.29 Aligned_cols=65 Identities=20% Similarity=0.330 Sum_probs=48.2
Q ss_pred HHHhHHHHhhhhhhHHHHHHHHHHHHHHHhcCCCCCCcccchhcccccCCCCCcEEEEEecCCCCchHHHHHHHhcCccc
Q 044777 162 ATREQRFERVTKNLKVARVFTTLVEEMKAMGLAPNDDSQCTEVMAPVALGDRSPVLLFMGGGMGAGKSTVLKDILKEPFW 241 (513)
Q Consensus 162 a~r~~rf~r~~~~~~v~r~~~~~ve~~~~~~~~~~~~~~~~~vl~p~~~~~~~P~LILmaG~pGAGKSTla~~Ll~~~f~ 241 (513)
.-|=+.|+.++-+..++..+...++ ....|.++++.|++|+||||+++.+....
T Consensus 14 kyrP~~~~~~~~~~~~~~~l~~~~~------------------------~~~~~~~lll~G~~G~GKT~la~~l~~~~-- 67 (316)
T PHA02544 14 KYRPSTIDECILPAADKETFKSIVK------------------------KGRIPNMLLHSPSPGTGKTTVAKALCNEV-- 67 (316)
T ss_pred ccCCCcHHHhcCcHHHHHHHHHHHh------------------------cCCCCeEEEeeCcCCCCHHHHHHHHHHHh--
Confidence 3445678888888888887777772 23468899999999999999999998761
Q ss_pred ccCCCCeEEecccc
Q 044777 242 AGAAGNAVVIEADA 255 (513)
Q Consensus 242 ~~~~~~aVvInaDe 255 (513)
+.+...+|+..
T Consensus 68 ---~~~~~~i~~~~ 78 (316)
T PHA02544 68 ---GAEVLFVNGSD 78 (316)
T ss_pred ---CccceEeccCc
Confidence 24555666654
No 193
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=96.62 E-value=0.0014 Score=58.00 Aligned_cols=38 Identities=24% Similarity=0.388 Sum_probs=28.8
Q ss_pred EEEEecCCCCchHHHHHHHhcCcccccCCCCeEEeccccc
Q 044777 217 LLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADAF 256 (513)
Q Consensus 217 LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDef 256 (513)
++++.|+||+||||++..++.. +...+..+++++.+.-
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~--~~~~~~~v~~~~~e~~ 38 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALN--IATKGGKVVYVDIEEE 38 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHH--HHhcCCEEEEEECCcc
Confidence 3689999999999999999775 3333456677777655
No 194
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=96.60 E-value=0.0095 Score=56.57 Aligned_cols=33 Identities=21% Similarity=0.355 Sum_probs=25.7
Q ss_pred EEEEecCCCCchHHHHHHHhcCcccccCCCCeEEeccc
Q 044777 217 LLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEAD 254 (513)
Q Consensus 217 LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaD 254 (513)
++++.|+|||||||++..++.. + +.+..+|++.
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~--~---~~~~~~iat~ 35 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQ--S---GLQVLYIATA 35 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHH--c---CCCcEeCcCC
Confidence 5899999999999999999876 1 2345666553
No 195
>KOG2134 consensus Polynucleotide kinase 3' phosphatase [Replication, recombination and repair]
Probab=96.59 E-value=0.0062 Score=64.94 Aligned_cols=77 Identities=22% Similarity=0.183 Sum_probs=57.8
Q ss_pred CCCcEEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEecccccccchhhhhhhhccccCchhhHHHHHhHhHHHHHHH
Q 044777 212 DRSPVLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADAFKESDVIYRALSSRSHVDMLQTAELVHQSSTDAASS 291 (513)
Q Consensus 212 ~~~P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDefR~~~p~y~~l~~~G~~Dp~qaae~v~~eAtrlA~~ 291 (513)
...+.+|+++|-|||||||++...... .+.+++|+|.+ |.+ + . ...
T Consensus 266 ~~~~eiV~~vgfp~sGks~f~a~~~~~-------~~y~~vn~d~l-------------g~~---~---~--------C~~ 311 (422)
T KOG2134|consen 266 DGHGEIVVAVGFPGSGKSTFAAKRVVP-------NGYKIVNADTL-------------GTP---Q---N--------CLL 311 (422)
T ss_pred CCCCcEEEEEecCCCCcchhhhhhccc-------CceeEeecccC-------------CCc---h---h--------hHH
Confidence 445689999999999999999887665 67889999999 211 0 0 011
Q ss_pred HHHHHHHCCCcEEEECcCCChHHHHHHHHHH
Q 044777 292 LLVTALNEGRDVIMDGTLSWVPFVVQTITMA 322 (513)
Q Consensus 292 li~~aL~~GrsVIlDtTlS~~~~~~qii~~A 322 (513)
.-.++|..|.+||+|.|--+...++..+..|
T Consensus 312 ~~~e~l~~~~sVvidnt~pd~~sr~~~~~~a 342 (422)
T KOG2134|consen 312 ANAEALKHGKSVVIDNTNPDAESRKYYLDCA 342 (422)
T ss_pred HHHHHhhcccEEeeCCCCcchHHHHHHhhhH
Confidence 2357889999999999998877766666544
No 196
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=96.59 E-value=0.0051 Score=59.21 Aligned_cols=94 Identities=24% Similarity=0.283 Sum_probs=48.9
Q ss_pred EEEEecCCCCchHHHHHHHhcCcccccCCCCeEEecccccccchhhhhhhhccccCchhhHHHHHhHhHHHHHHHHHHHH
Q 044777 217 LLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADAFKESDVIYRALSSRSHVDMLQTAELVHQSSTDAASSLLVTA 296 (513)
Q Consensus 217 LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDefR~~~p~y~~l~~~G~~Dp~qaae~v~~eAtrlA~~li~~a 296 (513)
+++++||+||||||++..++.. +.......++.-.|.+--.++........ .+ +... .......+..+
T Consensus 3 lilI~GptGSGKTTll~~ll~~--~~~~~~~~i~t~e~~~E~~~~~~~~~i~q--------~~-vg~~-~~~~~~~i~~a 70 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDY--INKNKTHHILTIEDPIEFVHESKRSLINQ--------RE-VGLD-TLSFENALKAA 70 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHH--hhhcCCcEEEEEcCCccccccCccceeee--------cc-cCCC-ccCHHHHHHHH
Confidence 7899999999999999998875 32222223333333331111110000000 00 0000 01123456677
Q ss_pred HHCCCcEEEECcCCChHHHHHHHHHH
Q 044777 297 LNEGRDVIMDGTLSWVPFVVQTITMA 322 (513)
Q Consensus 297 L~~GrsVIlDtTlS~~~~~~qii~~A 322 (513)
+..+-++|+=+=..+++....+++.+
T Consensus 71 Lr~~pd~ii~gEird~e~~~~~l~~a 96 (198)
T cd01131 71 LRQDPDVILVGEMRDLETIRLALTAA 96 (198)
T ss_pred hcCCcCEEEEcCCCCHHHHHHHHHHH
Confidence 77777777766666766655555533
No 197
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=96.57 E-value=0.0025 Score=54.48 Aligned_cols=40 Identities=25% Similarity=0.373 Sum_probs=30.1
Q ss_pred cEEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEeccccc
Q 044777 215 PVLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADAF 256 (513)
Q Consensus 215 P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDef 256 (513)
+..+++.|+||+||||+++.+... +...+..++.++...+
T Consensus 19 ~~~v~i~G~~G~GKT~l~~~i~~~--~~~~~~~v~~~~~~~~ 58 (151)
T cd00009 19 PKNLLLYGPPGTGKTTLARAIANE--LFRPGAPFLYLNASDL 58 (151)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH--hhcCCCCeEEEehhhh
Confidence 457889999999999999999886 3223455666666665
No 198
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=96.56 E-value=0.017 Score=57.50 Aligned_cols=88 Identities=22% Similarity=0.274 Sum_probs=51.3
Q ss_pred CcEEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEe-cccccccchhhhhhhhccccCchhhHHHHHhHhHHHHHHHH
Q 044777 214 SPVLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVI-EADAFKESDVIYRALSSRSHVDMLQTAELVHQSSTDAASSL 292 (513)
Q Consensus 214 ~P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvI-naDefR~~~p~y~~l~~~G~~Dp~qaae~v~~eAtrlA~~l 292 (513)
....++++|++||||||+.+.++.. .+.....++.| ++.++.-.++..-.+... ....-...+
T Consensus 126 ~~~~ili~G~tGSGKTT~l~all~~--i~~~~~~iv~iEd~~E~~l~~~~~~~~~~~--------------~~~~~~~~~ 189 (270)
T PF00437_consen 126 GRGNILISGPTGSGKTTLLNALLEE--IPPEDERIVTIEDPPELRLPGPNQIQIQTR--------------RDEISYEDL 189 (270)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHH--CHTTTSEEEEEESSS-S--SCSSEEEEEEE--------------TTTBSHHHH
T ss_pred cceEEEEECCCccccchHHHHHhhh--ccccccceEEeccccceeecccceEEEEee--------------cCcccHHHH
Confidence 3578999999999999999999875 33222344555 566663211111111110 000112356
Q ss_pred HHHHHHCCCcEEEECcCCChHHHHH
Q 044777 293 LVTALNEGRDVIMDGTLSWVPFVVQ 317 (513)
Q Consensus 293 i~~aL~~GrsVIlDtTlS~~~~~~q 317 (513)
+..+|.++-++|+=+-.++.+....
T Consensus 190 l~~~LR~~pD~iiigEiR~~e~~~~ 214 (270)
T PF00437_consen 190 LKSALRQDPDVIIIGEIRDPEAAEA 214 (270)
T ss_dssp HHHHTTS--SEEEESCE-SCHHHHH
T ss_pred HHHHhcCCCCcccccccCCHhHHHH
Confidence 7788999999999999999876554
No 199
>TIGR00174 miaA tRNA isopentenyltransferase (miaA). Catalyzes the first step in the modification of an adenosine near the anticodon to 2-methylthio-N6-isopentyladenosine.
Probab=96.51 E-value=0.0048 Score=63.58 Aligned_cols=33 Identities=30% Similarity=0.483 Sum_probs=28.6
Q ss_pred EEEEecCCCCchHHHHHHHhcCcccccCCCCeEEeccccc
Q 044777 217 LLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADAF 256 (513)
Q Consensus 217 LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDef 256 (513)
+++++||+|||||+++..|++. .+..+|++|.+
T Consensus 1 vi~i~G~t~~GKs~la~~l~~~-------~~~~iis~Ds~ 33 (287)
T TIGR00174 1 VIFIMGPTAVGKSQLAIQLAKK-------LNAEIISVDSM 33 (287)
T ss_pred CEEEECCCCCCHHHHHHHHHHh-------CCCcEEEechh
Confidence 4789999999999999999987 35668999985
No 200
>PRK08084 DNA replication initiation factor; Provisional
Probab=96.44 E-value=0.022 Score=56.30 Aligned_cols=39 Identities=18% Similarity=0.233 Sum_probs=28.7
Q ss_pred EEEEecCCCCchHHHHHHHhcCcccccCCCCeEEecccccc
Q 044777 217 LLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADAFK 257 (513)
Q Consensus 217 LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDefR 257 (513)
.+++.||+|+||||++..+... ....+..+.+++.|...
T Consensus 47 ~l~l~Gp~G~GKThLl~a~~~~--~~~~~~~v~y~~~~~~~ 85 (235)
T PRK08084 47 YIYLWSREGAGRSHLLHAACAE--LSQRGRAVGYVPLDKRA 85 (235)
T ss_pred eEEEECCCCCCHHHHHHHHHHH--HHhCCCeEEEEEHHHHh
Confidence 5789999999999999988764 11223456788877653
No 201
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=96.43 E-value=0.0078 Score=60.90 Aligned_cols=90 Identities=19% Similarity=0.247 Sum_probs=56.8
Q ss_pred EEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEe-cccccccchhhhhhhhccccCchhhHHHHHhHhHHHHHHHHHH
Q 044777 216 VLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVI-EADAFKESDVIYRALSSRSHVDMLQTAELVHQSSTDAASSLLV 294 (513)
Q Consensus 216 ~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvI-naDefR~~~p~y~~l~~~G~~Dp~qaae~v~~eAtrlA~~li~ 294 (513)
-+++++|++||||||+.+.++.. ......+.+.| |+.++. ++. .... . +..+.+.-....+.
T Consensus 81 GlilisG~tGSGKTT~l~all~~--i~~~~~~iitiEdp~E~~--~~~---~~q~---~-------v~~~~~~~~~~~l~ 143 (264)
T cd01129 81 GIILVTGPTGSGKTTTLYSALSE--LNTPEKNIITVEDPVEYQ--IPG---INQV---Q-------VNEKAGLTFARGLR 143 (264)
T ss_pred CEEEEECCCCCcHHHHHHHHHhh--hCCCCCeEEEECCCceec--CCC---ceEE---E-------eCCcCCcCHHHHHH
Confidence 48999999999999999999775 22222344555 555553 111 1110 0 00011112345678
Q ss_pred HHHHCCCcEEEECcCCChHHHHHHHHHH
Q 044777 295 TALNEGRDVIMDGTLSWVPFVVQTITMA 322 (513)
Q Consensus 295 ~aL~~GrsVIlDtTlS~~~~~~qii~~A 322 (513)
.+|..+-++|+=+=.++++....+++.|
T Consensus 144 ~~lR~~PD~i~vgEiR~~e~a~~~~~aa 171 (264)
T cd01129 144 AILRQDPDIIMVGEIRDAETAEIAVQAA 171 (264)
T ss_pred HHhccCCCEEEeccCCCHHHHHHHHHHH
Confidence 8899999999999999988766565544
No 202
>PRK05642 DNA replication initiation factor; Validated
Probab=96.42 E-value=0.012 Score=58.22 Aligned_cols=96 Identities=17% Similarity=0.191 Sum_probs=53.1
Q ss_pred EEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEecccccccchhhhhh-hhcccc--CchhhHHHHHhHhHHHHHHHH
Q 044777 216 VLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADAFKESDVIYRA-LSSRSH--VDMLQTAELVHQSSTDAASSL 292 (513)
Q Consensus 216 ~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDefR~~~p~y~~-l~~~G~--~Dp~qaae~v~~eAtrlA~~l 292 (513)
..+++.|++|+|||+++..+... +...+..+++++++++-...+.+.. +..... .|-.+.- ..........-.+
T Consensus 46 ~~l~l~G~~G~GKTHLl~a~~~~--~~~~~~~v~y~~~~~~~~~~~~~~~~~~~~d~LiiDDi~~~-~~~~~~~~~Lf~l 122 (234)
T PRK05642 46 SLIYLWGKDGVGRSHLLQAACLR--FEQRGEPAVYLPLAELLDRGPELLDNLEQYELVCLDDLDVI-AGKADWEEALFHL 122 (234)
T ss_pred CeEEEECCCCCCHHHHHHHHHHH--HHhCCCcEEEeeHHHHHhhhHHHHHhhhhCCEEEEechhhh-cCChHHHHHHHHH
Confidence 45688999999999999998754 2223567889999887533221111 111000 0100100 0001112233445
Q ss_pred HHHHHHCCCcEEEECcCCChHH
Q 044777 293 LVTALNEGRDVIMDGTLSWVPF 314 (513)
Q Consensus 293 i~~aL~~GrsVIlDtTlS~~~~ 314 (513)
+..+.+.|..+|+=++...+.+
T Consensus 123 ~n~~~~~g~~ilits~~~p~~l 144 (234)
T PRK05642 123 FNRLRDSGRRLLLAASKSPREL 144 (234)
T ss_pred HHHHHhcCCEEEEeCCCCHHHc
Confidence 6777778888888777655433
No 203
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.41 E-value=0.011 Score=67.26 Aligned_cols=56 Identities=23% Similarity=0.306 Sum_probs=46.8
Q ss_pred HHHHHhHHHHhhhhhhHHHHHHHHHHHHHHHhcCCCCCCcccchhcccccCCCCCcEEEEEecCCCCchHHHHHHHhcCc
Q 044777 160 MQATREQRFERVTKNLKVARVFTTLVEEMKAMGLAPNDDSQCTEVMAPVALGDRSPVLLFMGGGMGAGKSTVLKDILKEP 239 (513)
Q Consensus 160 ~~a~r~~rf~r~~~~~~v~r~~~~~ve~~~~~~~~~~~~~~~~~vl~p~~~~~~~P~LILmaG~pGAGKSTla~~Ll~~~ 239 (513)
-+..|=++|+.++....+.+.|...++ ..+.|..+|+.|++|.||||+++.|++..
T Consensus 7 arKYRPqtFddVIGQe~vv~~L~~al~------------------------~gRLpHA~LFtGP~GvGKTTLAriLAkaL 62 (700)
T PRK12323 7 ARKWRPRDFTTLVGQEHVVRALTHALE------------------------QQRLHHAYLFTGTRGVGKTTLSRILAKSL 62 (700)
T ss_pred HHHhCCCcHHHHcCcHHHHHHHHHHHH------------------------hCCCceEEEEECCCCCCHHHHHHHHHHHh
Confidence 344566899999999999998888883 23467899999999999999999999873
No 204
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=96.39 E-value=0.0022 Score=65.39 Aligned_cols=122 Identities=17% Similarity=0.185 Sum_probs=64.2
Q ss_pred ccchhcccccCCCCCcEEEEEecCCCCchHHHHHHHhcCcccccCCCCeEE--ecc-----------cccccc-hhh---
Q 044777 200 QCTEVMAPVALGDRSPVLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVV--IEA-----------DAFKES-DVI--- 262 (513)
Q Consensus 200 ~~~~vl~p~~~~~~~P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVv--Ina-----------DefR~~-~p~--- 262 (513)
...++|....+...+..+|=+.|+|||||||++..|... |...+..+-+ ||| |-+|.. +..
T Consensus 14 ~~~~ll~~l~~~~g~a~~iGiTG~PGaGKSTli~~l~~~--~~~~g~~VaVlAVDPSSp~tGGAlLGDRiRM~~~~~d~~ 91 (266)
T PF03308_consen 14 EARELLKRLYPHTGRAHVIGITGPPGAGKSTLIDALIRE--LRERGKRVAVLAVDPSSPFTGGALLGDRIRMQELSRDPG 91 (266)
T ss_dssp HHHHHHHHHGGGTT-SEEEEEEE-TTSSHHHHHHHHHHH--HHHTT--EEEEEE-GGGGCC---SS--GGGCHHHHTSTT
T ss_pred HHHHHHHHHHhhcCCceEEEeeCCCCCcHHHHHHHHHHH--HhhcCCceEEEEECCCCCCCCCcccccHHHhcCcCCCCC
Confidence 345555555554556778899999999999999999876 5444444433 343 444432 110
Q ss_pred --hhhhhccccCchhhHHHHHhHhHHHHHHHHHHHHHHCCCc-EEEECcCCChHHHHHHHHHHhhhhhcccccccccc
Q 044777 263 --YRALSSRSHVDMLQTAELVHQSSTDAASSLLVTALNEGRD-VIMDGTLSWVPFVVQTITMARNVHRHRYRMGVGYK 337 (513)
Q Consensus 263 --y~~l~~~G~~Dp~qaae~v~~eAtrlA~~li~~aL~~Grs-VIlDtTlS~~~~~~qii~~Ar~~h~~~y~~g~GYk 337 (513)
.+.+.++|. ...+ ++.....+.-+-..|++ |++||+--+.+-.+ + +.-++...|.+.||+=
T Consensus 92 vfIRS~atRG~-----lGGl-----s~~t~~~v~ll~aaG~D~IiiETVGvGQsE~~-I---~~~aD~~v~v~~Pg~G 155 (266)
T PF03308_consen 92 VFIRSMATRGS-----LGGL-----SRATRDAVRLLDAAGFDVIIIETVGVGQSEVD-I---ADMADTVVLVLVPGLG 155 (266)
T ss_dssp EEEEEE---SS-----HHHH-----HHHHHHHHHHHHHTT-SEEEEEEESSSTHHHH-H---HTTSSEEEEEEESSTC
T ss_pred EEEeecCcCCC-----CCCc-----cHhHHHHHHHHHHcCCCEEEEeCCCCCccHHH-H---HHhcCeEEEEecCCCc
Confidence 011112111 0111 12222334444457995 55688887766644 3 3445777888888765
No 205
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.33 E-value=0.0056 Score=64.33 Aligned_cols=55 Identities=18% Similarity=0.257 Sum_probs=44.2
Q ss_pred HHHHHhHHHHhhhhhhHHHHHHHHHHHHHHHhcCCCCCCcccchhcccccCCCCCcEEEEEecCCCCchHHHHHHHhcC
Q 044777 160 MQATREQRFERVTKNLKVARVFTTLVEEMKAMGLAPNDDSQCTEVMAPVALGDRSPVLLFMGGGMGAGKSTVLKDILKE 238 (513)
Q Consensus 160 ~~a~r~~rf~r~~~~~~v~r~~~~~ve~~~~~~~~~~~~~~~~~vl~p~~~~~~~P~LILmaG~pGAGKSTla~~Ll~~ 238 (513)
-+.-|=++|+.++....+.+.|...+. ..+-|..+++.||+|+||||+++.+++.
T Consensus 7 ~~kyrP~~~~~iiGq~~~~~~l~~~~~------------------------~~~~~h~~L~~Gp~G~GKTtla~~la~~ 61 (363)
T PRK14961 7 ARKWRPQYFRDIIGQKHIVTAISNGLS------------------------LGRIHHAWLLSGTRGVGKTTIARLLAKS 61 (363)
T ss_pred HHHhCCCchhhccChHHHHHHHHHHHH------------------------cCCCCeEEEEecCCCCCHHHHHHHHHHH
Confidence 344455789999998888888887772 1235778999999999999999999886
No 206
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=96.33 E-value=0.003 Score=57.97 Aligned_cols=43 Identities=30% Similarity=0.528 Sum_probs=23.9
Q ss_pred CCCcEEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEeccccc
Q 044777 212 DRSPVLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADAF 256 (513)
Q Consensus 212 ~~~P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDef 256 (513)
...|..+++.|++|+||||+.+.+... +...+.-.+.++.+..
T Consensus 21 ~~~~~~~ll~G~~G~GKT~ll~~~~~~--~~~~~~~~~~~~~~~~ 63 (185)
T PF13191_consen 21 SGSPRNLLLTGESGSGKTSLLRALLDR--LAERGGYVISINCDDS 63 (185)
T ss_dssp S-----EEE-B-TTSSHHHHHHHHHHH--HHHHT--EEEEEEETT
T ss_pred cCCCcEEEEECCCCCCHHHHHHHHHHH--HHhcCCEEEEEEEecc
Confidence 456789999999999999999998775 3322112344455544
No 207
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=96.32 E-value=0.021 Score=60.86 Aligned_cols=38 Identities=18% Similarity=0.332 Sum_probs=28.9
Q ss_pred CcEEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEeccccc
Q 044777 214 SPVLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADAF 256 (513)
Q Consensus 214 ~P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDef 256 (513)
.|.-+++.||||+|||++++.++.+. +..++.+++..+
T Consensus 164 ~p~gvLL~GppGtGKT~lAkaia~~~-----~~~~i~v~~~~l 201 (389)
T PRK03992 164 PPKGVLLYGPPGTGKTLLAKAVAHET-----NATFIRVVGSEL 201 (389)
T ss_pred CCCceEEECCCCCChHHHHHHHHHHh-----CCCEEEeehHHH
Confidence 46678999999999999999998861 245555655544
No 208
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=96.31 E-value=0.0038 Score=66.28 Aligned_cols=25 Identities=24% Similarity=0.526 Sum_probs=22.5
Q ss_pred CcEEEEEecCCCCchHHHHHHHhcC
Q 044777 214 SPVLLFMGGGMGAGKSTVLKDILKE 238 (513)
Q Consensus 214 ~P~LILmaG~pGAGKSTla~~Ll~~ 238 (513)
+..+++++||||+||||+++.|+..
T Consensus 77 ~r~il~L~GPPGsGKStla~~La~~ 101 (361)
T smart00763 77 RKQILYLLGPVGGGKSSLVECLKRG 101 (361)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 5678999999999999999999764
No 209
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=96.31 E-value=0.027 Score=65.09 Aligned_cols=56 Identities=23% Similarity=0.330 Sum_probs=45.8
Q ss_pred HHHHHhHHHHhhhhhhHHHHHHHHHHHHHHHhcCCCCCCcccchhcccccCCCCCcEEEEEecCCCCchHHHHHHHhcCc
Q 044777 160 MQATREQRFERVTKNLKVARVFTTLVEEMKAMGLAPNDDSQCTEVMAPVALGDRSPVLLFMGGGMGAGKSTVLKDILKEP 239 (513)
Q Consensus 160 ~~a~r~~rf~r~~~~~~v~r~~~~~ve~~~~~~~~~~~~~~~~~vl~p~~~~~~~P~LILmaG~pGAGKSTla~~Ll~~~ 239 (513)
-+.-|=++|+.++....+.+.|...++ ..+-+..+|+.|++|.||||+++.|++..
T Consensus 7 arKYRPqtFdEVIGQe~Vv~~L~~aL~------------------------~gRL~HAyLFtGPpGvGKTTlAriLAKaL 62 (830)
T PRK07003 7 ARKWRPKDFASLVGQEHVVRALTHALD------------------------GGRLHHAYLFTGTRGVGKTTLSRIFAKAL 62 (830)
T ss_pred HHHhCCCcHHHHcCcHHHHHHHHHHHh------------------------cCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 344556799999999999998888872 23457789999999999999999998863
No 210
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=96.30 E-value=0.038 Score=56.95 Aligned_cols=134 Identities=16% Similarity=0.089 Sum_probs=72.3
Q ss_pred CcEEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEe-cccccccchhhhhhhhccccCchhhHHHHHhHhHHHHHHHH
Q 044777 214 SPVLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVI-EADAFKESDVIYRALSSRSHVDMLQTAELVHQSSTDAASSL 292 (513)
Q Consensus 214 ~P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvI-naDefR~~~p~y~~l~~~G~~Dp~qaae~v~~eAtrlA~~l 292 (513)
....++++|++||||||+.+.++.. ++. ..+.+.| +..++.-.++..-.+.. .. +. + ....--...+
T Consensus 143 ~~~~ili~G~tGsGKTTll~al~~~--~~~-~~~iv~ied~~El~~~~~~~~~l~~----~~-~~-~---~~~~~~~~~~ 210 (308)
T TIGR02788 143 SRKNIIISGGTGSGKTTFLKSLVDE--IPK-DERIITIEDTREIFLPHPNYVHLFY----SK-GG-Q---GLAKVTPKDL 210 (308)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHcc--CCc-cccEEEEcCccccCCCCCCEEEEEe----cC-CC-C---CcCccCHHHH
Confidence 3468999999999999999999875 332 2345555 22333211111000000 00 00 0 0000112345
Q ss_pred HHHHHHCCCcEEEECcCCChHHHHHHHHHHhhhhhcccccccccccccCCccccchhhhhhhhhhhhcccCCCCeEEEEE
Q 044777 293 LVTALNEGRDVIMDGTLSWVPFVVQTITMARNVHRHRYRMGVGYKKAEDGTVIENYWDRIGEREQAQDGKMRKPYRIELV 372 (513)
Q Consensus 293 i~~aL~~GrsVIlDtTlS~~~~~~qii~~Ar~~h~~~y~~g~GYkv~~~g~~~e~Yw~~v~~a~~~~~~~~~~gYrI~Lv 372 (513)
+..++...-++++=+=.++.+... +++.+ ..|-...+.
T Consensus 211 l~~~Lr~~pd~ii~gE~r~~e~~~-~l~a~-----------------------------------------~~g~~~~i~ 248 (308)
T TIGR02788 211 LQSCLRMRPDRIILGELRGDEAFD-FIRAV-----------------------------------------NTGHPGSIT 248 (308)
T ss_pred HHHHhcCCCCeEEEeccCCHHHHH-HHHHH-----------------------------------------hcCCCeEEE
Confidence 667788888877777666654332 22211 122222334
Q ss_pred EEe-cChHHHHHHHHHHHH--hcCCcCchhHH
Q 044777 373 GVV-CDAYLAVVRGIRRAI--MCRRAVRVKSQ 401 (513)
Q Consensus 373 ~V~-~dpelAv~Rv~~Rv~--~gGh~VP~~~i 401 (513)
-++ .++..++.|+..... ..|...|.+.+
T Consensus 249 T~Ha~~~~~~~~Rl~~l~~~~~~~~g~~~~~~ 280 (308)
T TIGR02788 249 TLHAGSPEEAFEQLALMVKSSQAGLGLDFAYI 280 (308)
T ss_pred EEeCCCHHHHHHHHHHHhhccccccCCCHHHH
Confidence 444 478888888887765 45667787766
No 211
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=96.28 E-value=0.021 Score=61.26 Aligned_cols=60 Identities=17% Similarity=0.196 Sum_probs=38.4
Q ss_pred HHHhhhhhhHHHHHHHHHHHHHHHhcCCCCCCcccchhcccccCCCCCcEEEEEecCCCCchHHHHHHHhcC
Q 044777 167 RFERVTKNLKVARVFTTLVEEMKAMGLAPNDDSQCTEVMAPVALGDRSPVLLFMGGGMGAGKSTVLKDILKE 238 (513)
Q Consensus 167 rf~r~~~~~~v~r~~~~~ve~~~~~~~~~~~~~~~~~vl~p~~~~~~~P~LILmaG~pGAGKSTla~~Ll~~ 238 (513)
+|+-+..-..++..+.+.|+-...- .++.... .-..|.-+++.||||+||||+++.++.+
T Consensus 143 ~~~digGl~~~k~~l~~~v~~pl~~----------~~~~~~~--Gl~~pkgvLL~GppGTGKT~LAkalA~~ 202 (398)
T PTZ00454 143 TYSDIGGLDIQKQEIREAVELPLTC----------PELYEQI--GIDPPRGVLLYGPPGTGKTMLAKAVAHH 202 (398)
T ss_pred CHHHcCCHHHHHHHHHHHHHHHhcC----------HHHHHhc--CCCCCceEEEECCCCCCHHHHHHHHHHh
Confidence 6666666666777777766411100 0111000 1135778999999999999999999986
No 212
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.26 E-value=0.12 Score=54.22 Aligned_cols=109 Identities=22% Similarity=0.269 Sum_probs=75.6
Q ss_pred hhhhHHHHHHHHH-h---HHHHhhhhhhHHHHHHHHHHHHHHHhcCCCCCCcccchhcccccCC-----CCCcE-EEEEe
Q 044777 152 KKKLKHIVMQATR-E---QRFERVTKNLKVARVFTTLVEEMKAMGLAPNDDSQCTEVMAPVALG-----DRSPV-LLFMG 221 (513)
Q Consensus 152 ~~~~~~~v~~a~r-~---~rf~r~~~~~~v~r~~~~~ve~~~~~~~~~~~~~~~~~vl~p~~~~-----~~~P~-LILma 221 (513)
++||+.-+..|+= + -|+.-|..-...|.++.+.| +.|+.-| .+.|+ -|++-
T Consensus 112 ~kKLr~~L~sAIv~EKPNVkWsDVAGLE~AKeALKEAV-------------------ILPIKFPqlFtGkR~PwrgiLLy 172 (439)
T KOG0739|consen 112 KKKLRSALNSAIVREKPNVKWSDVAGLEGAKEALKEAV-------------------ILPIKFPQLFTGKRKPWRGILLY 172 (439)
T ss_pred HHHHHHHhhhhhhccCCCCchhhhccchhHHHHHHhhe-------------------eecccchhhhcCCCCcceeEEEe
Confidence 6788888887754 3 37788888778888887776 6677655 35564 78999
Q ss_pred cCCCCchHHHHHHHhcCcccccCCCCeEEe-cccccccchhhhhhhhccccCchhhHHHHHhHhHHHHHHHHHHHHHHCC
Q 044777 222 GGMGAGKSTVLKDILKEPFWAGAAGNAVVI-EADAFKESDVIYRALSSRSHVDMLQTAELVHQSSTDAASSLLVTALNEG 300 (513)
Q Consensus 222 G~pGAGKSTla~~Ll~~~f~~~~~~~aVvI-naDefR~~~p~y~~l~~~G~~Dp~qaae~v~~eAtrlA~~li~~aL~~G 300 (513)
||||.|||-++++.+-+ .+..+.-| ++|.+-+.+ -++.++...+++-|-++.
T Consensus 173 GPPGTGKSYLAKAVATE-----AnSTFFSvSSSDLvSKWm----------------------GESEkLVknLFemARe~k 225 (439)
T KOG0739|consen 173 GPPGTGKSYLAKAVATE-----ANSTFFSVSSSDLVSKWM----------------------GESEKLVKNLFEMARENK 225 (439)
T ss_pred CCCCCcHHHHHHHHHhh-----cCCceEEeehHHHHHHHh----------------------ccHHHHHHHHHHHHHhcC
Confidence 99999999999999886 12222223 344442111 124466777888888888
Q ss_pred CcEEEE
Q 044777 301 RDVIMD 306 (513)
Q Consensus 301 rsVIlD 306 (513)
-++||=
T Consensus 226 PSIIFi 231 (439)
T KOG0739|consen 226 PSIIFI 231 (439)
T ss_pred CcEEEe
Confidence 898874
No 213
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=96.25 E-value=0.0073 Score=57.46 Aligned_cols=38 Identities=32% Similarity=0.470 Sum_probs=29.1
Q ss_pred CCcEEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEecc-ccccc
Q 044777 213 RSPVLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEA-DAFKE 258 (513)
Q Consensus 213 ~~P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvIna-DefR~ 258 (513)
..|. ||++|-||+||||++.++++. .+..+|+- |.+++
T Consensus 6 ~~PN-ILvtGTPG~GKstl~~~lae~-------~~~~~i~isd~vkE 44 (176)
T KOG3347|consen 6 ERPN-ILVTGTPGTGKSTLAERLAEK-------TGLEYIEISDLVKE 44 (176)
T ss_pred cCCC-EEEeCCCCCCchhHHHHHHHH-------hCCceEehhhHHhh
Confidence 3555 577999999999999999976 56778865 44443
No 214
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=96.24 E-value=0.015 Score=62.60 Aligned_cols=98 Identities=16% Similarity=0.171 Sum_probs=60.5
Q ss_pred CCcEEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEecccccc----cchhhhhhhhccccCchhhHHHHHhHhHHHH
Q 044777 213 RSPVLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADAFK----ESDVIYRALSSRSHVDMLQTAELVHQSSTDA 288 (513)
Q Consensus 213 ~~P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDefR----~~~p~y~~l~~~G~~Dp~qaae~v~~eAtrl 288 (513)
.++.++.+.||.|.||||....|+..-.......++-+|..|.+| +++-.|..+... |... .....++
T Consensus 201 ~~~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~v----p~~v----v~~~~el 272 (407)
T COG1419 201 EQKRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGV----PLEV----VYSPKEL 272 (407)
T ss_pred ccCcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHHHHHHHhCC----ceEE----ecCHHHH
Confidence 348899999999999999999998761112344577799999999 466666655432 1111 0111121
Q ss_pred HHHHHHHHHHCCCcEEEECcCCChHHHHHHHH
Q 044777 289 ASSLLVTALNEGRDVIMDGTLSWVPFVVQTIT 320 (513)
Q Consensus 289 A~~li~~aL~~GrsVIlDtTlS~~~~~~qii~ 320 (513)
.. ....++...-|.+||+-++..-...+.+
T Consensus 273 ~~--ai~~l~~~d~ILVDTaGrs~~D~~~i~e 302 (407)
T COG1419 273 AE--AIEALRDCDVILVDTAGRSQYDKEKIEE 302 (407)
T ss_pred HH--HHHHhhcCCEEEEeCCCCCccCHHHHHH
Confidence 11 2345556677888888665444444433
No 215
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=96.23 E-value=0.096 Score=52.15 Aligned_cols=23 Identities=30% Similarity=0.611 Sum_probs=21.6
Q ss_pred EEEEEecCCCCchHHHHHHHhcC
Q 044777 216 VLLFMGGGMGAGKSTVLKDILKE 238 (513)
Q Consensus 216 ~LILmaG~pGAGKSTla~~Ll~~ 238 (513)
.+|.|+|+-|+||||+++.|+++
T Consensus 5 ~~IvI~G~IG~GKSTLa~~La~~ 27 (216)
T COG1428 5 MVIVIEGMIGAGKSTLAQALAEH 27 (216)
T ss_pred cEEEEecccccCHHHHHHHHHHH
Confidence 47899999999999999999997
No 216
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.22 E-value=0.005 Score=62.00 Aligned_cols=59 Identities=20% Similarity=0.275 Sum_probs=39.8
Q ss_pred hhcccccCCCCCcEEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEecccccccchhh
Q 044777 203 EVMAPVALGDRSPVLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADAFKESDVI 262 (513)
Q Consensus 203 ~vl~p~~~~~~~P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDefR~~~p~ 262 (513)
+++.-+--.-....++.+-|||||||||++..|..++-|+- -.+-+.++...+...-|.
T Consensus 18 eILkgvnL~v~~GEvhaiMGPNGsGKSTLa~~i~G~p~Y~V-t~G~I~~~GedI~~l~~~ 76 (251)
T COG0396 18 EILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEV-TEGEILFDGEDILELSPD 76 (251)
T ss_pred hhhcCcceeEcCCcEEEEECCCCCCHHHHHHHHhCCCCceE-ecceEEECCcccccCCHh
Confidence 45544443345667999999999999999999998743321 124466777777554443
No 217
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=96.19 E-value=0.023 Score=63.26 Aligned_cols=55 Identities=15% Similarity=0.299 Sum_probs=45.1
Q ss_pred HHHHHhHHHHhhhhhhHHHHHHHHHHHHHHHhcCCCCCCcccchhcccccCCCCCcEEEEEecCCCCchHHHHHHHhcC
Q 044777 160 MQATREQRFERVTKNLKVARVFTTLVEEMKAMGLAPNDDSQCTEVMAPVALGDRSPVLLFMGGGMGAGKSTVLKDILKE 238 (513)
Q Consensus 160 ~~a~r~~rf~r~~~~~~v~r~~~~~ve~~~~~~~~~~~~~~~~~vl~p~~~~~~~P~LILmaG~pGAGKSTla~~Ll~~ 238 (513)
-+.-|=+.|+.+.....+++.|...+. ..+-|.++++.|++|+||||+++.+++.
T Consensus 5 ~~KyRP~~fdeiiGqe~v~~~L~~~I~------------------------~grl~hayLf~Gp~G~GKTt~Ar~LAk~ 59 (535)
T PRK08451 5 ALKYRPKHFDELIGQESVSKTLSLALD------------------------NNRLAHAYLFSGLRGSGKTSSARIFARA 59 (535)
T ss_pred HHHHCCCCHHHccCcHHHHHHHHHHHH------------------------cCCCCeeEEEECCCCCcHHHHHHHHHHH
Confidence 345566789999999998888888772 2346889999999999999999999876
No 218
>PRK09087 hypothetical protein; Validated
Probab=96.16 E-value=0.073 Score=52.68 Aligned_cols=84 Identities=14% Similarity=0.282 Sum_probs=50.2
Q ss_pred EEEEecCCCCchHHHHHHHhcCcccccCCCCeEEecccccccchhhhhhhhccccC--chhhHHHHHhHhHHHHHHHHHH
Q 044777 217 LLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADAFKESDVIYRALSSRSHV--DMLQTAELVHQSSTDAASSLLV 294 (513)
Q Consensus 217 LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDefR~~~p~y~~l~~~G~~--Dp~qaae~v~~eAtrlA~~li~ 294 (513)
.+++.|++|+||||+++.+... .++.+|+++.+..... ..+.. +.. |-.+.... . ......++.
T Consensus 46 ~l~l~G~~GsGKThLl~~~~~~-------~~~~~i~~~~~~~~~~--~~~~~-~~l~iDDi~~~~~-~---~~~lf~l~n 111 (226)
T PRK09087 46 VVVLAGPVGSGKTHLASIWREK-------SDALLIHPNEIGSDAA--NAAAE-GPVLIEDIDAGGF-D---ETGLFHLIN 111 (226)
T ss_pred eEEEECCCCCCHHHHHHHHHHh-------cCCEEecHHHcchHHH--Hhhhc-CeEEEECCCCCCC-C---HHHHHHHHH
Confidence 3588999999999999988765 4667888876533211 01111 000 10000000 0 122445677
Q ss_pred HHHHCCCcEEEECcCCChHH
Q 044777 295 TALNEGRDVIMDGTLSWVPF 314 (513)
Q Consensus 295 ~aL~~GrsVIlDtTlS~~~~ 314 (513)
.+.+.|..+|+-++...+.|
T Consensus 112 ~~~~~g~~ilits~~~p~~~ 131 (226)
T PRK09087 112 SVRQAGTSLLMTSRLWPSSW 131 (226)
T ss_pred HHHhCCCeEEEECCCChHHh
Confidence 88888999999888766555
No 219
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=96.16 E-value=0.0044 Score=50.21 Aligned_cols=21 Identities=38% Similarity=0.594 Sum_probs=18.9
Q ss_pred EEEEecCCCCchHHHHHHHhc
Q 044777 217 LLFMGGGMGAGKSTVLKDILK 237 (513)
Q Consensus 217 LILmaG~pGAGKSTla~~Ll~ 237 (513)
+.++.|+|||||||+..++.-
T Consensus 25 ~tli~G~nGsGKSTllDAi~~ 45 (62)
T PF13555_consen 25 VTLITGPNGSGKSTLLDAIQT 45 (62)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 789999999999999988854
No 220
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=96.15 E-value=0.0039 Score=57.74 Aligned_cols=38 Identities=18% Similarity=0.270 Sum_probs=28.6
Q ss_pred EEEEecCCCCchHHHHHHHhcCcccccCCCCeEEeccccc
Q 044777 217 LLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADAF 256 (513)
Q Consensus 217 LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDef 256 (513)
.+++.|+||+||||++.+++.. ....+.++.+++.++=
T Consensus 1 ~~li~G~~G~GKT~l~~~~~~~--~~~~g~~v~~~s~e~~ 38 (187)
T cd01124 1 STLLSGGPGTGKTTFALQFLYA--GLARGEPGLYVTLEES 38 (187)
T ss_pred CEEEEcCCCCCHHHHHHHHHHH--HHHCCCcEEEEECCCC
Confidence 3689999999999999988765 2234567778876543
No 221
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=96.13 E-value=0.014 Score=65.80 Aligned_cols=42 Identities=21% Similarity=0.313 Sum_probs=27.6
Q ss_pred cEEEEEecCCCCchHHHHHHHhcCcc-cc----cCCCCeEEeccccc
Q 044777 215 PVLLFMGGGMGAGKSTVLKDILKEPF-WA----GAAGNAVVIEADAF 256 (513)
Q Consensus 215 P~LILmaG~pGAGKSTla~~Ll~~~f-~~----~~~~~aVvInaDef 256 (513)
|.-+++.|+||+||||+++.+....- -. ....+++.+++-.+
T Consensus 175 ~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~l 221 (615)
T TIGR02903 175 PQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTTL 221 (615)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechhc
Confidence 44578899999999999998864310 00 01245677777655
No 222
>PLN02796 D-glycerate 3-kinase
Probab=96.12 E-value=0.0059 Score=64.55 Aligned_cols=43 Identities=19% Similarity=0.353 Sum_probs=32.6
Q ss_pred CCcEEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEecccccc
Q 044777 213 RSPVLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADAFK 257 (513)
Q Consensus 213 ~~P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDefR 257 (513)
.+|.++-|+|++||||||+++.|... ....+.....|.-|.+-
T Consensus 98 ~~pliIGI~G~sGSGKSTLa~~L~~l--L~~~g~~~g~IsiDdfY 140 (347)
T PLN02796 98 IPPLVIGISAPQGCGKTTLVFALVYL--FNATGRRAASLSIDDFY 140 (347)
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHH--hcccCCceeEEEECCcc
Confidence 47899999999999999999999865 22223345677777773
No 223
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.11 E-value=0.011 Score=62.98 Aligned_cols=44 Identities=14% Similarity=0.246 Sum_probs=33.5
Q ss_pred CCcEEEEEecCCCCchHHHHHHHhcCcccccCC-CCeEEecccccc
Q 044777 213 RSPVLLFMGGGMGAGKSTVLKDILKEPFWAGAA-GNAVVIEADAFK 257 (513)
Q Consensus 213 ~~P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~-~~aVvInaDefR 257 (513)
.++.++++.||||+||||++..|+... -...+ ..+.+|..|.+|
T Consensus 135 ~~g~ii~lvGptGvGKTTtiakLA~~~-~~~~G~~~V~lit~D~~R 179 (374)
T PRK14722 135 ERGGVFALMGPTGVGKTTTTAKLAARC-VMRFGASKVALLTTDSYR 179 (374)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHH-HHhcCCCeEEEEeccccc
Confidence 356799999999999999999998641 11112 356788999997
No 224
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.10 E-value=0.017 Score=62.08 Aligned_cols=67 Identities=16% Similarity=0.306 Sum_probs=47.7
Q ss_pred HHHHhhhhhhHHHHHHHHHHHHHHHhcCCCCCCcccchhcccccCC-----CCCcE-EEEEecCCCCchHHHHHHHhcCc
Q 044777 166 QRFERVTKNLKVARVFTTLVEEMKAMGLAPNDDSQCTEVMAPVALG-----DRSPV-LLFMGGGMGAGKSTVLKDILKEP 239 (513)
Q Consensus 166 ~rf~r~~~~~~v~r~~~~~ve~~~~~~~~~~~~~~~~~vl~p~~~~-----~~~P~-LILmaG~pGAGKSTla~~Ll~~~ 239 (513)
.|++-+......|+++.+.| +.|...| -++|+ -++|.||||+|||-+|++++.+
T Consensus 209 ikW~DIagl~~AK~lL~EAV-------------------vlPi~mPe~F~GirrPWkgvLm~GPPGTGKTlLAKAvATE- 268 (491)
T KOG0738|consen 209 IKWDDIAGLHEAKKLLKEAV-------------------VLPIWMPEFFKGIRRPWKGVLMVGPPGTGKTLLAKAVATE- 268 (491)
T ss_pred cChHhhcchHHHHHHHHHHH-------------------hhhhhhHHHHhhcccccceeeeeCCCCCcHHHHHHHHHHh-
Confidence 46777888888888888877 3343333 34664 7899999999999999999987
Q ss_pred ccccCCCCeEEeccccc
Q 044777 240 FWAGAAGNAVVIEADAF 256 (513)
Q Consensus 240 f~~~~~~~aVvInaDef 256 (513)
++..+.-|++-.+
T Consensus 269 ----c~tTFFNVSsstl 281 (491)
T KOG0738|consen 269 ----CGTTFFNVSSSTL 281 (491)
T ss_pred ----hcCeEEEechhhh
Confidence 3444444544444
No 225
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=96.09 E-value=0.011 Score=60.00 Aligned_cols=68 Identities=19% Similarity=0.305 Sum_probs=42.0
Q ss_pred HhHHHHhhhhhhHHHHHHHHHHHHHHHhcCCCCCCcccchhcccccCCCCCcEEEEEecCCCCchHHHHHHHhcCccccc
Q 044777 164 REQRFERVTKNLKVARVFTTLVEEMKAMGLAPNDDSQCTEVMAPVALGDRSPVLLFMGGGMGAGKSTVLKDILKEPFWAG 243 (513)
Q Consensus 164 r~~rf~r~~~~~~v~r~~~~~ve~~~~~~~~~~~~~~~~~vl~p~~~~~~~P~LILmaG~pGAGKSTla~~Ll~~~f~~~ 243 (513)
|=+.|+.+..+..+.+.+...++ ....|. +++.||||+||||+++.++...+-..
T Consensus 10 ~P~~~~~~~g~~~~~~~L~~~~~------------------------~~~~~~-lll~Gp~GtGKT~la~~~~~~l~~~~ 64 (337)
T PRK12402 10 RPALLEDILGQDEVVERLSRAVD------------------------SPNLPH-LLVQGPPGSGKTAAVRALARELYGDP 64 (337)
T ss_pred CCCcHHHhcCCHHHHHHHHHHHh------------------------CCCCce-EEEECCCCCCHHHHHHHHHHHhcCcc
Confidence 33456666666666666666551 112233 67899999999999999877521000
Q ss_pred CCCCeEEeccccc
Q 044777 244 AAGNAVVIEADAF 256 (513)
Q Consensus 244 ~~~~aVvInaDef 256 (513)
...+.+.+|+..+
T Consensus 65 ~~~~~~~i~~~~~ 77 (337)
T PRK12402 65 WENNFTEFNVADF 77 (337)
T ss_pred cccceEEechhhh
Confidence 0134567777655
No 226
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=96.09 E-value=0.0052 Score=61.08 Aligned_cols=35 Identities=26% Similarity=0.437 Sum_probs=28.7
Q ss_pred CCcEEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEeccccc
Q 044777 213 RSPVLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADAF 256 (513)
Q Consensus 213 ~~P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDef 256 (513)
+.|.++++.|+||+||||+++.+.. ...+++.|..
T Consensus 10 ~~~~~~liyG~~G~GKtt~a~~~~~---------~~~~~~~d~~ 44 (220)
T TIGR01618 10 RIPNMYLIYGKPGTGKTSTIKYLPG---------KTLVLSFDMS 44 (220)
T ss_pred CCCcEEEEECCCCCCHHHHHHhcCC---------CCEEEecccc
Confidence 4578899999999999999998743 3567888875
No 227
>PRK13768 GTPase; Provisional
Probab=96.08 E-value=0.0055 Score=61.45 Aligned_cols=41 Identities=20% Similarity=0.297 Sum_probs=31.8
Q ss_pred CcEEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEeccccc
Q 044777 214 SPVLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADAF 256 (513)
Q Consensus 214 ~P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDef 256 (513)
++.++++.|++|+||||++..+... ....+.++.+|+.|.-
T Consensus 1 ~~~~i~v~G~~G~GKTt~~~~~~~~--l~~~g~~v~~i~~D~~ 41 (253)
T PRK13768 1 MMYIVFFLGTAGSGKTTLTKALSDW--LEEQGYDVAIVNLDPA 41 (253)
T ss_pred CcEEEEEECCCCccHHHHHHHHHHH--HHhcCCceEEEECCCc
Confidence 4678999999999999999888764 3334567778888754
No 228
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=96.04 E-value=0.0069 Score=60.76 Aligned_cols=74 Identities=18% Similarity=0.231 Sum_probs=48.3
Q ss_pred HHHHHHhHHHHhhhhhhHHHHHHHHHHHHHHHhcCCCCCCcccchhcccccCCCCCcEEEEEecCCCCchHHHHHHHhcC
Q 044777 159 VMQATREQRFERVTKNLKVARVFTTLVEEMKAMGLAPNDDSQCTEVMAPVALGDRSPVLLFMGGGMGAGKSTVLKDILKE 238 (513)
Q Consensus 159 v~~a~r~~rf~r~~~~~~v~r~~~~~ve~~~~~~~~~~~~~~~~~vl~p~~~~~~~P~LILmaG~pGAGKSTla~~Ll~~ 238 (513)
+-+.+|=++|+..+...+++..+.-+++..+..+ ...--+++.||||.||||+|..++.+
T Consensus 14 l~~~lRP~~L~efiGQ~~l~~~l~i~i~aa~~r~--------------------~~l~h~lf~GPPG~GKTTLA~IIA~e 73 (233)
T PF05496_consen 14 LAERLRPKSLDEFIGQEHLKGNLKILIRAAKKRG--------------------EALDHMLFYGPPGLGKTTLARIIANE 73 (233)
T ss_dssp HHHHTS-SSCCCS-S-HHHHHHHHHHHHHHHCTT--------------------S---EEEEESSTTSSHHHHHHHHHHH
T ss_pred hHHhcCCCCHHHccCcHHHHhhhHHHHHHHHhcC--------------------CCcceEEEECCCccchhHHHHHHHhc
Confidence 4566777888888888888888887775333221 22335688999999999999999987
Q ss_pred cccccCCCCeEEecccccc
Q 044777 239 PFWAGAAGNAVVIEADAFK 257 (513)
Q Consensus 239 ~f~~~~~~~aVvInaDefR 257 (513)
.+.++..+++..+.
T Consensus 74 -----~~~~~~~~sg~~i~ 87 (233)
T PF05496_consen 74 -----LGVNFKITSGPAIE 87 (233)
T ss_dssp -----CT--EEEEECCC--
T ss_pred -----cCCCeEeccchhhh
Confidence 34566777776664
No 229
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.03 E-value=0.0079 Score=65.87 Aligned_cols=54 Identities=20% Similarity=0.322 Sum_probs=42.7
Q ss_pred HHHHhHHHHhhhhhhHHHHHHHHHHHHHHHhcCCCCCCcccchhcccccCCCCCcEEEEEecCCCCchHHHHHHHhcC
Q 044777 161 QATREQRFERVTKNLKVARVFTTLVEEMKAMGLAPNDDSQCTEVMAPVALGDRSPVLLFMGGGMGAGKSTVLKDILKE 238 (513)
Q Consensus 161 ~a~r~~rf~r~~~~~~v~r~~~~~ve~~~~~~~~~~~~~~~~~vl~p~~~~~~~P~LILmaG~pGAGKSTla~~Ll~~ 238 (513)
+..|=+.|+.++....+.+.|...+. ..+-|..+++.||||+||||+++.++..
T Consensus 6 ~kyRP~~~~divGq~~i~~~L~~~i~------------------------~~~l~~~~Lf~GPpGtGKTTlA~~lA~~ 59 (472)
T PRK14962 6 RKYRPKTFSEVVGQDHVKKLIINALK------------------------KNSISHAYIFAGPRGTGKTTVARILAKS 59 (472)
T ss_pred HHHCCCCHHHccCcHHHHHHHHHHHH------------------------cCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 44566788989888888777777662 2235678999999999999999999875
No 230
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=96.01 E-value=0.045 Score=63.93 Aligned_cols=55 Identities=18% Similarity=0.291 Sum_probs=45.1
Q ss_pred HHHHhHHHHhhhhhhHHHHHHHHHHHHHHHhcCCCCCCcccchhcccccCCCCCcEEEEEecCCCCchHHHHHHHhcCc
Q 044777 161 QATREQRFERVTKNLKVARVFTTLVEEMKAMGLAPNDDSQCTEVMAPVALGDRSPVLLFMGGGMGAGKSTVLKDILKEP 239 (513)
Q Consensus 161 ~a~r~~rf~r~~~~~~v~r~~~~~ve~~~~~~~~~~~~~~~~~vl~p~~~~~~~P~LILmaG~pGAGKSTla~~Ll~~~ 239 (513)
+..|=+.|..++....|++.|...++ ..+-+..+|+.|++|.||||+++.|++..
T Consensus 7 ~KyRP~~f~eiiGqe~v~~~L~~~i~------------------------~~ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L 61 (824)
T PRK07764 7 RRYRPATFAEVIGQEHVTEPLSTALD------------------------SGRINHAYLFSGPRGCGKTSSARILARSL 61 (824)
T ss_pred HHhCCCCHHHhcCcHHHHHHHHHHHH------------------------hCCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 44455789999999999998888882 23456789999999999999999998863
No 231
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=96.00 E-value=0.0074 Score=68.76 Aligned_cols=39 Identities=31% Similarity=0.370 Sum_probs=31.5
Q ss_pred CcEEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEecccccc
Q 044777 214 SPVLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADAFK 257 (513)
Q Consensus 214 ~P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDefR 257 (513)
..++.++|||||.||||+|..++++ .|..++=|||-+=|
T Consensus 325 ~kKilLL~GppGlGKTTLAHViAkq-----aGYsVvEINASDeR 363 (877)
T KOG1969|consen 325 PKKILLLCGPPGLGKTTLAHVIAKQ-----AGYSVVEINASDER 363 (877)
T ss_pred ccceEEeecCCCCChhHHHHHHHHh-----cCceEEEecccccc
Confidence 3479999999999999999999997 45666767775554
No 232
>PLN03046 D-glycerate 3-kinase; Provisional
Probab=96.00 E-value=0.0073 Score=65.57 Aligned_cols=44 Identities=18% Similarity=0.301 Sum_probs=33.3
Q ss_pred CCCcEEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEecccccc
Q 044777 212 DRSPVLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADAFK 257 (513)
Q Consensus 212 ~~~P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDefR 257 (513)
..+|.+|-|+|++||||||+++.|... ....+.....|.-|.|-
T Consensus 209 ~~~PlIIGIsG~qGSGKSTLa~~L~~l--L~~~g~~vgvISiDDfY 252 (460)
T PLN03046 209 DIPPLVIGFSAPQGCGKTTLVFALDYL--FRVTGRKSATLSIDDFY 252 (460)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHH--hcccCCceEEEEECCcc
Confidence 347999999999999999999998653 22223456778888873
No 233
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=96.00 E-value=0.034 Score=57.41 Aligned_cols=84 Identities=21% Similarity=0.300 Sum_probs=50.5
Q ss_pred EEEEEecCCCCchHHHHHHHhcCcccccC--CCCeEEe-cccccccchhhhhhhhccccCchhhHHHHHhHhHHHHHHHH
Q 044777 216 VLLFMGGGMGAGKSTVLKDILKEPFWAGA--AGNAVVI-EADAFKESDVIYRALSSRSHVDMLQTAELVHQSSTDAASSL 292 (513)
Q Consensus 216 ~LILmaG~pGAGKSTla~~Ll~~~f~~~~--~~~aVvI-naDefR~~~p~y~~l~~~G~~Dp~qaae~v~~eAtrlA~~l 292 (513)
..++++|++||||||+++.|+.. .+.. ....+.| ++.++.-.++.+-.+.. + + ... -+..+
T Consensus 133 ~~ilI~G~tGSGKTTll~al~~~--i~~~~~~~ri~tiEd~~El~~~~~~~v~~~~----~-----~----~~~-~~~~~ 196 (299)
T TIGR02782 133 KNILVVGGTGSGKTTLANALLAE--IAKNDPTDRVVIIEDTRELQCAAPNVVQLRT----S-----D----DAI-SMTRL 196 (299)
T ss_pred CeEEEECCCCCCHHHHHHHHHHH--hhccCCCceEEEECCchhhcCCCCCEEEEEe----c-----C----CCC-CHHHH
Confidence 46789999999999999999875 2211 2334444 44444211111100100 0 0 000 23467
Q ss_pred HHHHHHCCCcEEEECcCCChHHH
Q 044777 293 LVTALNEGRDVIMDGTLSWVPFV 315 (513)
Q Consensus 293 i~~aL~~GrsVIlDtTlS~~~~~ 315 (513)
+..+|..+-+.|+=+-.++++-.
T Consensus 197 l~~aLR~~pD~iivGEiR~~ea~ 219 (299)
T TIGR02782 197 LKATLRLRPDRIIVGEVRGGEAL 219 (299)
T ss_pred HHHHhcCCCCEEEEeccCCHHHH
Confidence 88999999999999999987643
No 234
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=96.00 E-value=0.007 Score=58.24 Aligned_cols=42 Identities=19% Similarity=0.324 Sum_probs=32.4
Q ss_pred CCcEEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEeccccc
Q 044777 213 RSPVLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADAF 256 (513)
Q Consensus 213 ~~P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDef 256 (513)
....++++.|+|||||||++.+++.+. ...+.++++|+.|.-
T Consensus 17 ~~g~i~~i~G~~GsGKT~l~~~~a~~~--~~~g~~v~yi~~e~~ 58 (218)
T cd01394 17 ERGTVTQVYGPPGTGKTNIAIQLAVET--AGQGKKVAYIDTEGL 58 (218)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHH--HhcCCeEEEEECCCC
Confidence 357899999999999999999998652 123467788887643
No 235
>PHA02624 large T antigen; Provisional
Probab=95.99 E-value=0.011 Score=66.54 Aligned_cols=34 Identities=15% Similarity=0.221 Sum_probs=27.2
Q ss_pred cccccCCCCCcEEEEEecCCCCchHHHHHHHhcC
Q 044777 205 MAPVALGDRSPVLLFMGGGMGAGKSTVLKDILKE 238 (513)
Q Consensus 205 l~p~~~~~~~P~LILmaG~pGAGKSTla~~Ll~~ 238 (513)
+........+..++++.|||||||||++..|++.
T Consensus 421 lk~~l~giPKk~~il~~GPpnTGKTtf~~sLl~~ 454 (647)
T PHA02624 421 LKLIVENVPKRRYWLFKGPVNSGKTTLAAALLDL 454 (647)
T ss_pred HHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4444444456679999999999999999999986
No 236
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=95.97 E-value=0.0054 Score=54.23 Aligned_cols=42 Identities=21% Similarity=0.363 Sum_probs=31.2
Q ss_pred CcEEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEeccccccc
Q 044777 214 SPVLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADAFKE 258 (513)
Q Consensus 214 ~P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDefR~ 258 (513)
...++.|.|+|||||||+.+.|... +. ...+.+.++...+..
T Consensus 10 ~g~~~~i~G~nGsGKStLl~~l~g~--~~-~~~G~i~~~~~~~~~ 51 (137)
T PF00005_consen 10 PGEIVAIVGPNGSGKSTLLKALAGL--LP-PDSGSILINGKDISD 51 (137)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHTTS--SH-ESEEEEEETTEEGTT
T ss_pred CCCEEEEEccCCCccccceeeeccc--cc-ccccccccccccccc
Confidence 3458999999999999999999876 32 134567777666643
No 237
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=95.95 E-value=0.0098 Score=56.09 Aligned_cols=41 Identities=29% Similarity=0.379 Sum_probs=29.7
Q ss_pred CCcEEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEeccccc
Q 044777 213 RSPVLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADAF 256 (513)
Q Consensus 213 ~~P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDef 256 (513)
....++.+.|+|||||||+.+.++.. .. ...+.+.++...+
T Consensus 16 ~~Ge~~~i~G~nGsGKSTLl~~i~G~--~~-~~~G~i~~~g~~~ 56 (190)
T TIGR01166 16 ERGEVLALLGANGAGKSTLLLHLNGL--LR-PQSGAVLIDGEPL 56 (190)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCC--CC-CCceeEEECCEEc
Confidence 35668999999999999999999864 22 2245566665444
No 238
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=95.93 E-value=0.0091 Score=59.74 Aligned_cols=41 Identities=17% Similarity=0.292 Sum_probs=31.4
Q ss_pred CCCcEEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEecccc
Q 044777 212 DRSPVLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADA 255 (513)
Q Consensus 212 ~~~P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDe 255 (513)
-.+..++.++||+||||||+.+.+..- +....+.+.|+.+.
T Consensus 25 v~~Gevv~iiGpSGSGKSTlLRclN~L---E~~~~G~I~i~g~~ 65 (240)
T COG1126 25 VEKGEVVVIIGPSGSGKSTLLRCLNGL---EEPDSGSITVDGED 65 (240)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHCC---cCCCCceEEECCEe
Confidence 346678999999999999999998653 23446778888743
No 239
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.93 E-value=0.034 Score=62.06 Aligned_cols=44 Identities=20% Similarity=0.342 Sum_probs=33.0
Q ss_pred CcEEEEEecCCCCchHHHHHHHhcCcccccC-CCCeEEeccccccc
Q 044777 214 SPVLLFMGGGMGAGKSTVLKDILKEPFWAGA-AGNAVVIEADAFKE 258 (513)
Q Consensus 214 ~P~LILmaG~pGAGKSTla~~Ll~~~f~~~~-~~~aVvInaDefR~ 258 (513)
...++.|.|++|+||||++..|+.. +.... +..+.+|+.|.+|.
T Consensus 349 ~G~vIaLVGPtGvGKTTtaakLAa~-la~~~~gkkVaLIdtDtyRi 393 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTIAKLAQR-FAAQHAPRDVALVTTDTQRV 393 (559)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHH-HHHhcCCCceEEEecccccc
Confidence 4678888999999999999999764 11111 24577899999873
No 240
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=95.91 E-value=0.0096 Score=57.73 Aligned_cols=39 Identities=21% Similarity=0.444 Sum_probs=29.2
Q ss_pred cEEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEeccccc
Q 044777 215 PVLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADAF 256 (513)
Q Consensus 215 P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDef 256 (513)
|..+.+.|++||||||+.+.+... +.. ..+..++..|..
T Consensus 1 ~~~i~i~G~~GsGKTTll~~l~~~--l~~-~~~~~~~~~d~~ 39 (199)
T TIGR00101 1 PLKIGVAGPVGSGKTALIEALTRA--LRQ-KYQLAVITNDIY 39 (199)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHh--hCc-CCcEEEEeCCcC
Confidence 678999999999999999999876 221 234556666654
No 241
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=95.90 E-value=0.011 Score=56.39 Aligned_cols=41 Identities=20% Similarity=0.366 Sum_probs=30.4
Q ss_pred CCcEEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEeccccc
Q 044777 213 RSPVLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADAF 256 (513)
Q Consensus 213 ~~P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDef 256 (513)
....++.+.|+|||||||+.+.|+.. .. ...+-+.++...+
T Consensus 25 ~~G~~~~l~G~nGsGKSTLl~~l~G~--~~-~~~G~i~~~g~~~ 65 (211)
T cd03225 25 KKGEFVLIVGPNGSGKSTLLRLLNGL--LG-PTSGEVLVDGKDL 65 (211)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhcC--CC-CCCceEEECCEEc
Confidence 45679999999999999999999864 21 2345567766544
No 242
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.90 E-value=0.011 Score=63.07 Aligned_cols=59 Identities=19% Similarity=0.242 Sum_probs=47.3
Q ss_pred HHHHHHhHHHHhhhhhhHHHHHHHHHHHHHHHhcCCCCCCcccchhcccccCCCCCcEEEEEecCCCCchHHHHHHHhcC
Q 044777 159 VMQATREQRFERVTKNLKVARVFTTLVEEMKAMGLAPNDDSQCTEVMAPVALGDRSPVLLFMGGGMGAGKSTVLKDILKE 238 (513)
Q Consensus 159 v~~a~r~~rf~r~~~~~~v~r~~~~~ve~~~~~~~~~~~~~~~~~vl~p~~~~~~~P~LILmaG~pGAGKSTla~~Ll~~ 238 (513)
+-+..|=+.|+.+.....+++.|...++ ..+-|..+++.||+|.||||++..+++.
T Consensus 6 l~~k~RP~~~~eiiGq~~~~~~L~~~~~------------------------~~~~~ha~lf~Gp~G~GKtt~A~~~a~~ 61 (397)
T PRK14955 6 IARKYRPKKFADITAQEHITRTIQNSLR------------------------MGRVGHGYIFSGLRGVGKTTAARVFAKA 61 (397)
T ss_pred HHHhcCCCcHhhccChHHHHHHHHHHHH------------------------hCCcceeEEEECCCCCCHHHHHHHHHHH
Confidence 3445566799999999999988888883 2346788999999999999999999886
Q ss_pred ccc
Q 044777 239 PFW 241 (513)
Q Consensus 239 ~f~ 241 (513)
.++
T Consensus 62 l~c 64 (397)
T PRK14955 62 VNC 64 (397)
T ss_pred hcC
Confidence 443
No 243
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=95.88 E-value=0.01 Score=56.62 Aligned_cols=41 Identities=17% Similarity=0.297 Sum_probs=30.3
Q ss_pred CCcEEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEeccccc
Q 044777 213 RSPVLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADAF 256 (513)
Q Consensus 213 ~~P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDef 256 (513)
....++.+.|+|||||||+.+.++.. .. ...+.+.++...+
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl--~~-p~~G~i~~~g~~~ 64 (205)
T cd03226 24 YAGEIIALTGKNGAGKTTLAKILAGL--IK-ESSGSILLNGKPI 64 (205)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcC--CC-CCceEEEECCEEh
Confidence 45679999999999999999999874 21 2345566766544
No 244
>CHL00181 cbbX CbbX; Provisional
Probab=95.88 E-value=0.019 Score=58.85 Aligned_cols=88 Identities=14% Similarity=0.181 Sum_probs=46.7
Q ss_pred HHHHHHHhHHHHhhhhhhHHHHHHHHHHHHHHHhcCCCCCCcccchhcccccCCCCCcEEEEEecCCCCchHHHHHHHhc
Q 044777 158 IVMQATREQRFERVTKNLKVARVFTTLVEEMKAMGLAPNDDSQCTEVMAPVALGDRSPVLLFMGGGMGAGKSTVLKDILK 237 (513)
Q Consensus 158 ~v~~a~r~~rf~r~~~~~~v~r~~~~~ve~~~~~~~~~~~~~~~~~vl~p~~~~~~~P~LILmaG~pGAGKSTla~~Ll~ 237 (513)
.-++.+.+.=++.+..-..||..+.+++..+....+ ..-++ . .+...+.-+++.|+||+||||+|+.++.
T Consensus 12 ~~~~~~~~~l~~~l~Gl~~vK~~i~e~~~~~~~~~~--------~~~~g-~-~~~~~~~~ill~G~pGtGKT~lAr~la~ 81 (287)
T CHL00181 12 TQIQEVLDILDEELVGLAPVKTRIREIAALLLIDRL--------RKNLG-L-TSSNPGLHMSFTGSPGTGKTTVALKMAD 81 (287)
T ss_pred cCHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHH--------HHHcC-C-CCCCCCceEEEECCCCCCHHHHHHHHHH
Confidence 334455554445566666777777666643221110 00000 0 1112234478899999999999999966
Q ss_pred Ccc---cccCCCCeEEeccccc
Q 044777 238 EPF---WAGAAGNAVVIEADAF 256 (513)
Q Consensus 238 ~~f---~~~~~~~aVvInaDef 256 (513)
..+ +. ..+.++.++.+.+
T Consensus 82 ~~~~~g~~-~~~~~~~v~~~~l 102 (287)
T CHL00181 82 ILYKLGYI-KKGHLLTVTRDDL 102 (287)
T ss_pred HHHHcCCC-CCCceEEecHHHH
Confidence 410 00 1123556666655
No 245
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=95.87 E-value=0.036 Score=63.58 Aligned_cols=39 Identities=23% Similarity=0.411 Sum_probs=31.0
Q ss_pred CCcEEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEeccccc
Q 044777 213 RSPVLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADAF 256 (513)
Q Consensus 213 ~~P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDef 256 (513)
..|.-+++.||||+|||++++.++.+ .+.+++.|++.++
T Consensus 485 ~~~~giLL~GppGtGKT~lakalA~e-----~~~~fi~v~~~~l 523 (733)
T TIGR01243 485 RPPKGVLLFGPPGTGKTLLAKAVATE-----SGANFIAVRGPEI 523 (733)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHh-----cCCCEEEEehHHH
Confidence 35667899999999999999999987 2456677776655
No 246
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.87 E-value=0.026 Score=57.69 Aligned_cols=42 Identities=21% Similarity=0.288 Sum_probs=33.0
Q ss_pred CcEEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEecccccc
Q 044777 214 SPVLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADAFK 257 (513)
Q Consensus 214 ~P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDefR 257 (513)
.+..+++.|+||+||||++..++.. +...+..+.+|+.|.+|
T Consensus 74 ~~~~i~~~G~~g~GKTtl~~~l~~~--l~~~~~~v~~i~~D~~r 115 (270)
T PRK06731 74 EVQTIALIGPTGVGKTTTLAKMAWQ--FHGKKKTVGFITTDHSR 115 (270)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHHH--HHHcCCeEEEEecCCCC
Confidence 4568899999999999999988765 22234567789999886
No 247
>COG1072 CoaA Panthothenate kinase [Coenzyme metabolism]
Probab=95.87 E-value=0.029 Score=57.69 Aligned_cols=44 Identities=20% Similarity=0.416 Sum_probs=31.9
Q ss_pred CCCcEEEEEecCCCCchHHHHHHHhcCc-ccccCCCCeEEeccccc
Q 044777 212 DRSPVLLFMGGGMGAGKSTVLKDILKEP-FWAGAAGNAVVIEADAF 256 (513)
Q Consensus 212 ~~~P~LILmaG~pGAGKSTla~~Ll~~~-f~~~~~~~aVvInaDef 256 (513)
...|.+|-+||++|+||||+++.+..-. -|.+. ..+-+|-.|=|
T Consensus 79 ~~~pfIIgiaGsvavGKST~ar~L~~ll~~~~~~-~~v~lvpmDGF 123 (283)
T COG1072 79 QQRPFIIGIAGSVAVGKSTTARILQALLSRWPES-PKVDLVTMDGF 123 (283)
T ss_pred CCCCEEEEeccCccccHHHHHHHHHHHHhhCCCC-CceEEEecccc
Confidence 5689999999999999999999875420 04321 23567777777
No 248
>PF13476 AAA_23: AAA domain; PDB: 3AV0_B 3AUY_B 3AUX_A 2O5V_A 3QG5_B 3QF7_A 3THO_A.
Probab=95.87 E-value=0.0071 Score=55.84 Aligned_cols=24 Identities=46% Similarity=0.540 Sum_probs=20.9
Q ss_pred CcEEEEEecCCCCchHHHHHHHhc
Q 044777 214 SPVLLFMGGGMGAGKSTVLKDILK 237 (513)
Q Consensus 214 ~P~LILmaG~pGAGKSTla~~Ll~ 237 (513)
.|-+.++.|+||+||||++..+.-
T Consensus 18 ~~g~~vi~G~Ng~GKStil~ai~~ 41 (202)
T PF13476_consen 18 SPGLNVIYGPNGSGKSTILEAIRY 41 (202)
T ss_dssp -SEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCCcEEEECCCCCCHHHHHHHHHH
Confidence 577999999999999999998854
No 249
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=95.86 E-value=0.0086 Score=57.12 Aligned_cols=41 Identities=17% Similarity=0.258 Sum_probs=32.4
Q ss_pred CcEEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEeccccc
Q 044777 214 SPVLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADAF 256 (513)
Q Consensus 214 ~P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDef 256 (513)
+..++.+.|+|||||||++.+++.+. ...+..+++|+.+.+
T Consensus 11 ~g~i~~i~G~~GsGKT~l~~~~~~~~--~~~g~~v~yi~~e~~ 51 (209)
T TIGR02237 11 RGTITQIYGPPGSGKTNICMILAVNA--ARQGKKVVYIDTEGL 51 (209)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH--HhCCCeEEEEECCCC
Confidence 56799999999999999999987652 123467889999864
No 250
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=95.86 E-value=0.03 Score=52.38 Aligned_cols=76 Identities=18% Similarity=0.233 Sum_probs=44.8
Q ss_pred EEEecCCCCchHHHHHHHhcCcccccCCCCeEEecccccccchhhhhhhhccccCchhhHHHHHhHhHHHHHHHHHHHHH
Q 044777 218 LFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADAFKESDVIYRALSSRSHVDMLQTAELVHQSSTDAASSLLVTAL 297 (513)
Q Consensus 218 ILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDefR~~~p~y~~l~~~G~~Dp~qaae~v~~eAtrlA~~li~~aL 297 (513)
+++.|+.|||||||++.|..... .-....++....+.| ...|.| . +.......++..+.
T Consensus 4 imliG~~g~GKTTL~q~L~~~~~-~~~KTq~i~~~~~~I----------DTPGEy--------i--E~~~~y~aLi~ta~ 62 (143)
T PF10662_consen 4 IMLIGPSGSGKTTLAQALNGEEI-RYKKTQAIEYYDNTI----------DTPGEY--------I--ENPRFYHALIVTAQ 62 (143)
T ss_pred EEEECCCCCCHHHHHHHHcCCCC-CcCccceeEecccEE----------ECChhh--------e--eCHHHHHHHHHHHh
Confidence 68899999999999999987632 111233333333333 122333 1 22344456677777
Q ss_pred HCCC-cEEEECcCCChHH
Q 044777 298 NEGR-DVIMDGTLSWVPF 314 (513)
Q Consensus 298 ~~Gr-sVIlDtTlS~~~~ 314 (513)
+... -++.|+|-....+
T Consensus 63 dad~V~ll~dat~~~~~~ 80 (143)
T PF10662_consen 63 DADVVLLLQDATEPRSVF 80 (143)
T ss_pred hCCEEEEEecCCCCCccC
Confidence 6666 5667777655444
No 251
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=95.85 E-value=0.0096 Score=56.90 Aligned_cols=26 Identities=35% Similarity=0.395 Sum_probs=22.6
Q ss_pred CCCcEEEEEecCCCCchHHHHHHHhc
Q 044777 212 DRSPVLLFMGGGMGAGKSTVLKDILK 237 (513)
Q Consensus 212 ~~~P~LILmaG~pGAGKSTla~~Ll~ 237 (513)
-....++.+.|+|||||||+.+.++.
T Consensus 18 i~~G~~~~l~G~nG~GKSTLl~~il~ 43 (176)
T cd03238 18 IPLNVLVVVTGVSGSGKSTLVNEGLY 43 (176)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhh
Confidence 34667999999999999999998864
No 252
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=95.83 E-value=0.012 Score=56.53 Aligned_cols=41 Identities=24% Similarity=0.258 Sum_probs=30.0
Q ss_pred CCcEEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEeccccc
Q 044777 213 RSPVLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADAF 256 (513)
Q Consensus 213 ~~P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDef 256 (513)
....++.+.|+|||||||+.+.++.. .. ...+-+.++...+
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl--~~-~~~G~i~~~g~~~ 66 (220)
T cd03263 26 YKGEIFGLLGHNGAGKTTTLKMLTGE--LR-PTSGTAYINGYSI 66 (220)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCC--CC-CCCcEEEECCEec
Confidence 45668999999999999999999864 21 2245566665443
No 253
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=95.81 E-value=0.042 Score=57.50 Aligned_cols=94 Identities=26% Similarity=0.282 Sum_probs=52.2
Q ss_pred cEEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEecccccccchhhhhhhhccccCchhhHHHHHhHhHHHHHHHHHH
Q 044777 215 PVLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADAFKESDVIYRALSSRSHVDMLQTAELVHQSSTDAASSLLV 294 (513)
Q Consensus 215 P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDefR~~~p~y~~l~~~G~~Dp~qaae~v~~eAtrlA~~li~ 294 (513)
.-+++++|++||||||+.+.++.. +......-++.-.|.+-..++.-...... . +. .. ...-....+.
T Consensus 122 ~g~ili~G~tGSGKTT~l~al~~~--i~~~~~~~i~tiEdp~E~~~~~~~~~i~q--~------ev-g~-~~~~~~~~l~ 189 (343)
T TIGR01420 122 RGLILVTGPTGSGKSTTLASMIDY--INKNAAGHIITIEDPIEYVHRNKRSLINQ--R------EV-GL-DTLSFANALR 189 (343)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHh--hCcCCCCEEEEEcCChhhhccCccceEEc--c------cc-CC-CCcCHHHHHH
Confidence 468999999999999999998875 32222233333333331111110000000 0 00 00 0011244567
Q ss_pred HHHHCCCcEEEECcCCChHHHHHHHH
Q 044777 295 TALNEGRDVIMDGTLSWVPFVVQTIT 320 (513)
Q Consensus 295 ~aL~~GrsVIlDtTlS~~~~~~qii~ 320 (513)
.+|.++-++|+=+=+.+++-...++.
T Consensus 190 ~~lr~~pd~i~vgEird~~~~~~~l~ 215 (343)
T TIGR01420 190 AALREDPDVILIGEMRDLETVELALT 215 (343)
T ss_pred HhhccCCCEEEEeCCCCHHHHHHHHH
Confidence 88889999999888888776655444
No 254
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=95.81 E-value=0.045 Score=60.56 Aligned_cols=42 Identities=24% Similarity=0.409 Sum_probs=34.5
Q ss_pred EEEEecCCCCchHHHHHHHhcCcccccCCCCeEEecccccccchh
Q 044777 217 LLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADAFKESDV 261 (513)
Q Consensus 217 LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDefR~~~p 261 (513)
.+=|.||+||||||+++.|..- |. ...+.|.+|.-++++.++
T Consensus 364 ~lgIIGPSgSGKSTLaR~lvG~--w~-p~~G~VRLDga~l~qWd~ 405 (580)
T COG4618 364 ALGIIGPSGSGKSTLARLLVGI--WP-PTSGSVRLDGADLRQWDR 405 (580)
T ss_pred eEEEECCCCccHHHHHHHHHcc--cc-cCCCcEEecchhhhcCCH
Confidence 4678899999999999999986 86 346789999988876544
No 255
>TIGR03238 dnd_assoc_3 dnd system-associated protein 3. cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.
Probab=95.80 E-value=0.0094 Score=65.53 Aligned_cols=65 Identities=26% Similarity=0.330 Sum_probs=40.3
Q ss_pred hhhhHHHHHHHHHHHHHHHhcCCCCCCcccchhcccccCCCCCcEEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEe
Q 044777 172 TKNLKVARVFTTLVEEMKAMGLAPNDDSQCTEVMAPVALGDRSPVLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVI 251 (513)
Q Consensus 172 ~~~~~v~r~~~~~ve~~~~~~~~~~~~~~~~~vl~p~~~~~~~P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvI 251 (513)
.+-+-|+|-+.+-+ ..++..+.-.-....++.++|++||||||+.+..... ...++.+++
T Consensus 5 K~Ylhi~r~Ie~~l----------------~~vL~~Vsl~i~~GEiv~L~G~SGsGKSTLLr~~l~~----~~sGg~I~l 64 (504)
T TIGR03238 5 KKYLYVKRKIQTDL----------------ERILVKFNKELPSSSLLFLCGSSGDGKSEILAENKRK----FSEGYEFFL 64 (504)
T ss_pred hhhheechHHHHHH----------------HHHHhCCceeecCCCEEEEECCCCCCHHHHHhcCCCC----CCCCCEEEE
Confidence 34456677777666 3344443333456789999999999999999933222 122334677
Q ss_pred ccccc
Q 044777 252 EADAF 256 (513)
Q Consensus 252 naDef 256 (513)
++-.+
T Consensus 65 dg~~~ 69 (504)
T TIGR03238 65 DATHS 69 (504)
T ss_pred CCEEC
Confidence 66333
No 256
>COG3709 Uncharacterized component of phosphonate metabolism [Inorganic ion transport and metabolism]
Probab=95.79 E-value=0.076 Score=51.34 Aligned_cols=25 Identities=32% Similarity=0.351 Sum_probs=21.7
Q ss_pred CcEEEEEecCCCCchHHHHHHHhcC
Q 044777 214 SPVLLFMGGGMGAGKSTVLKDILKE 238 (513)
Q Consensus 214 ~P~LILmaG~pGAGKSTla~~Ll~~ 238 (513)
+.++|.+.||+||||-|+.......
T Consensus 4 ~G~lI~vvGPSGAGKDtl~~~ar~~ 28 (192)
T COG3709 4 MGRLIAVVGPSGAGKDTLLDAARAR 28 (192)
T ss_pred CceEEEEECCCCCChHHHHHHHHHH
Confidence 4689999999999999998877654
No 257
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.77 E-value=0.013 Score=56.58 Aligned_cols=42 Identities=19% Similarity=0.219 Sum_probs=30.0
Q ss_pred CCCcEEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEeccccc
Q 044777 212 DRSPVLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADAF 256 (513)
Q Consensus 212 ~~~P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDef 256 (513)
-....++.+.|+|||||||+.+.|+.. .+ ...+-+.++...+
T Consensus 23 i~~Ge~~~i~G~nGsGKSTLl~~i~G~--~~-~~~G~i~~~g~~~ 64 (220)
T cd03265 23 VRRGEIFGLLGPNGAGKTTTIKMLTTL--LK-PTSGRATVAGHDV 64 (220)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhCC--CC-CCceEEEECCEec
Confidence 345679999999999999999999864 21 2234566665433
No 258
>COG0324 MiaA tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis]
Probab=95.76 E-value=0.021 Score=59.51 Aligned_cols=89 Identities=20% Similarity=0.311 Sum_probs=54.7
Q ss_pred CcEEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEecccccc---cch-----hhhhhhhccccC--chhhHHH-HHh
Q 044777 214 SPVLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADAFK---ESD-----VIYRALSSRSHV--DMLQTAE-LVH 282 (513)
Q Consensus 214 ~P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDefR---~~~-----p~y~~l~~~G~~--Dp~qaae-~v~ 282 (513)
.|.+++|+||.+||||-++-.|++. .+..+||.|..- ..+ |...++...-|+ |.....+ +..
T Consensus 2 ~~~~i~I~GPTAsGKT~lai~LAk~-------~~~eIIs~DSmQvYr~mdIGTAKps~~e~~~vpHhliDi~~p~e~ysa 74 (308)
T COG0324 2 KPKLIVIAGPTASGKTALAIALAKR-------LGGEIISLDSMQVYRGLDIGTAKPSLEELAGVPHHLIDIRDPTESYSA 74 (308)
T ss_pred CccEEEEECCCCcCHHHHHHHHHHH-------cCCcEEecchhhhcCCCcccCCCCCHHHHcCCCEEEecccCccccccH
Confidence 5789999999999999999999998 477899999872 111 111111110011 2111111 211
Q ss_pred HhHHHHHHHHHHHHHHCCC-cEEEECcC
Q 044777 283 QSSTDAASSLLVTALNEGR-DVIMDGTL 309 (513)
Q Consensus 283 ~eAtrlA~~li~~aL~~Gr-sVIlDtTl 309 (513)
.+..+.+...+.....+|+ .+++-||.
T Consensus 75 ~~f~~~a~~~i~~i~~rgk~pIlVGGTg 102 (308)
T COG0324 75 AEFQRDALAAIDDILARGKLPILVGGTG 102 (308)
T ss_pred HHHHHHHHHHHHHHHhCCCCcEEEccHH
Confidence 2223566777888888986 66666663
No 259
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=95.76 E-value=0.0065 Score=56.23 Aligned_cols=36 Identities=25% Similarity=0.398 Sum_probs=28.9
Q ss_pred EEEecCCCCchHHHHHHHhcCcccccCCCCeEEecccc
Q 044777 218 LFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADA 255 (513)
Q Consensus 218 ILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDe 255 (513)
+.+.|++||||||++..+... |...+..+.+++.|.
T Consensus 2 i~~~G~~GsGKTt~~~~l~~~--~~~~g~~v~ii~~D~ 37 (148)
T cd03114 2 IGITGVPGAGKSTLIDALITA--LRARGKRVAVLAIDP 37 (148)
T ss_pred EEEECCCCCcHHHHHHHHHHH--HHHCCCEEEEEEeCC
Confidence 678899999999999999875 444566777888884
No 260
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=95.76 E-value=0.078 Score=55.63 Aligned_cols=86 Identities=19% Similarity=0.260 Sum_probs=50.1
Q ss_pred cEEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEe-cccccccchhhhhhhhccccCchhhHHHHHhHhHHHHHHHHH
Q 044777 215 PVLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVI-EADAFKESDVIYRALSSRSHVDMLQTAELVHQSSTDAASSLL 293 (513)
Q Consensus 215 P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvI-naDefR~~~p~y~~l~~~G~~Dp~qaae~v~~eAtrlA~~li 293 (513)
..-++++|++||||||+++.|+............+.| ++.++.-.++..-.+... ...-+..++
T Consensus 144 ~~nilI~G~tGSGKTTll~aL~~~i~~~~~~~rivtiEd~~El~~~~~n~v~l~~~---------------~~~~~~~lv 208 (323)
T PRK13833 144 RLNIVISGGTGSGKTTLANAVIAEIVASAPEDRLVILEDTAEIQCAAENAVALHTS---------------DTVDMARLL 208 (323)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHhcCCCCceEEEecCCcccccCCCCEEEeccC---------------CCcCHHHHH
Confidence 3468999999999999999998751100012234444 344543111110000000 011134577
Q ss_pred HHHHHCCCcEEEECcCCChHHH
Q 044777 294 VTALNEGRDVIMDGTLSWVPFV 315 (513)
Q Consensus 294 ~~aL~~GrsVIlDtTlS~~~~~ 315 (513)
..+|..+-+.|+=+=.++.+-.
T Consensus 209 ~~aLR~~PD~IivGEiRg~ea~ 230 (323)
T PRK13833 209 KSTMRLRPDRIIVGEVRDGAAL 230 (323)
T ss_pred HHHhCCCCCEEEEeecCCHHHH
Confidence 8999999999999888887543
No 261
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=95.75 E-value=0.025 Score=56.50 Aligned_cols=24 Identities=29% Similarity=0.389 Sum_probs=20.2
Q ss_pred cEEEEEecCCCCchHHHHHHHhcC
Q 044777 215 PVLLFMGGGMGAGKSTVLKDILKE 238 (513)
Q Consensus 215 P~LILmaG~pGAGKSTla~~Ll~~ 238 (513)
+.=+++.||||+||||+++.+++.
T Consensus 42 ~~~vll~GppGtGKTtlA~~ia~~ 65 (261)
T TIGR02881 42 VLHMIFKGNPGTGKTTVARILGKL 65 (261)
T ss_pred cceEEEEcCCCCCHHHHHHHHHHH
Confidence 344678999999999999999764
No 262
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=95.74 E-value=0.0076 Score=57.74 Aligned_cols=42 Identities=19% Similarity=0.332 Sum_probs=31.8
Q ss_pred CcEEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEecccccc
Q 044777 214 SPVLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADAFK 257 (513)
Q Consensus 214 ~P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDefR 257 (513)
.+..+++.|++|+||||+++.+.... ...+..+++++++.+.
T Consensus 37 ~~~~lll~G~~G~GKT~la~~~~~~~--~~~~~~~~~i~~~~~~ 78 (226)
T TIGR03420 37 GDRFLYLWGESGSGKSHLLQAACAAA--EERGKSAIYLPLAELA 78 (226)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHH--HhcCCcEEEEeHHHHH
Confidence 45678899999999999999998651 1223567788887774
No 263
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=95.74 E-value=0.013 Score=59.63 Aligned_cols=43 Identities=21% Similarity=0.189 Sum_probs=32.8
Q ss_pred CCCcEEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEecccccc
Q 044777 212 DRSPVLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADAFK 257 (513)
Q Consensus 212 ~~~P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDefR 257 (513)
-....++.+-|||||||||+.+.++.-. ....+.|.++...+.
T Consensus 25 i~~G~i~~iiGpNG~GKSTLLk~l~g~l---~p~~G~V~l~g~~i~ 67 (258)
T COG1120 25 IPKGEITGILGPNGSGKSTLLKCLAGLL---KPKSGEVLLDGKDIA 67 (258)
T ss_pred ecCCcEEEEECCCCCCHHHHHHHHhccC---CCCCCEEEECCCchh
Confidence 3456789999999999999999998741 123567888886654
No 264
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=95.73 E-value=0.013 Score=57.25 Aligned_cols=42 Identities=21% Similarity=0.317 Sum_probs=31.0
Q ss_pred CCCcEEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEeccccc
Q 044777 212 DRSPVLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADAF 256 (513)
Q Consensus 212 ~~~P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDef 256 (513)
-....++.+.|+|||||||+.+.|+.. .+ ...+-+.++...+
T Consensus 24 i~~Ge~~~i~G~nGsGKSTLl~~l~G~--~~-p~~G~i~~~g~~i 65 (236)
T TIGR03864 24 VRPGEFVALLGPNGAGKSTLFSLLTRL--YV-AQEGQISVAGHDL 65 (236)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCC--cC-CCceEEEECCEEc
Confidence 346779999999999999999999864 21 2345567766544
No 265
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=95.73 E-value=0.014 Score=55.99 Aligned_cols=41 Identities=32% Similarity=0.473 Sum_probs=30.0
Q ss_pred CCcEEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEeccccc
Q 044777 213 RSPVLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADAF 256 (513)
Q Consensus 213 ~~P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDef 256 (513)
....++.+.|+|||||||+.+.++.. .+ ...+-+.++...+
T Consensus 26 ~~G~~~~l~G~nGsGKSTLl~~i~Gl--~~-~~~G~i~~~g~~~ 66 (214)
T TIGR02673 26 RKGEFLFLTGPSGAGKTTLLKLLYGA--LT-PSRGQVRIAGEDV 66 (214)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCC--CC-CCCceEEECCEEc
Confidence 45669999999999999999999875 22 2245566766444
No 266
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=95.73 E-value=0.014 Score=55.81 Aligned_cols=41 Identities=20% Similarity=0.228 Sum_probs=29.6
Q ss_pred CCcEEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEeccccc
Q 044777 213 RSPVLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADAF 256 (513)
Q Consensus 213 ~~P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDef 256 (513)
....++.+.|+|||||||+.+.|+.. .. ...+-+.++...+
T Consensus 24 ~~Ge~~~l~G~nGsGKSTLl~~l~G~--~~-~~~G~v~~~g~~~ 64 (213)
T cd03301 24 ADGEFVVLLGPSGCGKTTTLRMIAGL--EE-PTSGRIYIGGRDV 64 (213)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCC--CC-CCceEEEECCEEC
Confidence 45678999999999999999999875 21 2235566655443
No 267
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=95.73 E-value=0.013 Score=57.19 Aligned_cols=41 Identities=24% Similarity=0.353 Sum_probs=30.3
Q ss_pred CCcEEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEeccccc
Q 044777 213 RSPVLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADAF 256 (513)
Q Consensus 213 ~~P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDef 256 (513)
....++.+.|+|||||||+.+.|+.. .+ ...+-+.++...+
T Consensus 26 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl--~~-~~~G~i~~~g~~~ 66 (243)
T TIGR02315 26 NPGEFVAIIGPSGAGKSTLLRCINRL--VE-PSSGSILLEGTDI 66 (243)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCC--cC-CCccEEEECCEEh
Confidence 45679999999999999999999864 22 2245567766444
No 268
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=95.70 E-value=0.012 Score=66.05 Aligned_cols=75 Identities=24% Similarity=0.281 Sum_probs=57.6
Q ss_pred HHHHhhhhhhHHHHHHHHHHHHHHHhcCCCCCCcccchhcccccC---CCCCcEEEEEecCCCCchHHHHHHHhcCcccc
Q 044777 166 QRFERVTKNLKVARVFTTLVEEMKAMGLAPNDDSQCTEVMAPVAL---GDRSPVLLFMGGGMGAGKSTVLKDILKEPFWA 242 (513)
Q Consensus 166 ~rf~r~~~~~~v~r~~~~~ve~~~~~~~~~~~~~~~~~vl~p~~~---~~~~P~LILmaG~pGAGKSTla~~Ll~~~f~~ 242 (513)
-+|..++...+.|.-++++|+ .+..|... ...-|+-+++.||||+|||.++++++.+
T Consensus 147 v~F~DVAG~dEakeel~EiVd----------------fLk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgE---- 206 (596)
T COG0465 147 VTFADVAGVDEAKEELSELVD----------------FLKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGE---- 206 (596)
T ss_pred cChhhhcCcHHHHHHHHHHHH----------------HHhCchhhHhcccccccceeEecCCCCCcHHHHHHHhcc----
Confidence 499999999999999999994 44444322 2467999999999999999999999886
Q ss_pred cCCCCeEEecccccccchh
Q 044777 243 GAAGNAVVIEADAFKESDV 261 (513)
Q Consensus 243 ~~~~~aVvInaDefR~~~p 261 (513)
.+-++..++.-+|-+++.
T Consensus 207 -A~VPFf~iSGS~FVemfV 224 (596)
T COG0465 207 -AGVPFFSISGSDFVEMFV 224 (596)
T ss_pred -cCCCceeccchhhhhhhc
Confidence 344555666666655543
No 269
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.70 E-value=0.014 Score=64.40 Aligned_cols=52 Identities=23% Similarity=0.298 Sum_probs=42.6
Q ss_pred HHhHHHHhhhhhhHHHHHHHHHHHHHHHhcCCCCCCcccchhcccccCCCCCcEEEEEecCCCCchHHHHHHHhcC
Q 044777 163 TREQRFERVTKNLKVARVFTTLVEEMKAMGLAPNDDSQCTEVMAPVALGDRSPVLLFMGGGMGAGKSTVLKDILKE 238 (513)
Q Consensus 163 ~r~~rf~r~~~~~~v~r~~~~~ve~~~~~~~~~~~~~~~~~vl~p~~~~~~~P~LILmaG~pGAGKSTla~~Ll~~ 238 (513)
.|=+.|+.+.....+.+.|...++ ....|.+|++.||||+||||+++.+++.
T Consensus 8 yRP~~~~dvvGq~~v~~~L~~~i~------------------------~~~l~ha~Lf~GppGtGKTTlA~~lA~~ 59 (504)
T PRK14963 8 ARPITFDEVVGQEHVKEVLLAALR------------------------QGRLGHAYLFSGPRGVGKTTTARLIAMA 59 (504)
T ss_pred hCCCCHHHhcChHHHHHHHHHHHH------------------------cCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 344688999988888888888872 1346789999999999999999999876
No 270
>CHL00176 ftsH cell division protein; Validated
Probab=95.70 E-value=0.037 Score=62.90 Aligned_cols=74 Identities=22% Similarity=0.251 Sum_probs=50.9
Q ss_pred HHHHhhhhhhHHHHHHHHHHHHHHHhcCCCCCCcccchhcccccCCCCCcEEEEEecCCCCchHHHHHHHhcCcccccCC
Q 044777 166 QRFERVTKNLKVARVFTTLVEEMKAMGLAPNDDSQCTEVMAPVALGDRSPVLLFMGGGMGAGKSTVLKDILKEPFWAGAA 245 (513)
Q Consensus 166 ~rf~r~~~~~~v~r~~~~~ve~~~~~~~~~~~~~~~~~vl~p~~~~~~~P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~ 245 (513)
-+|+.+..-.+++..+.++++-++.-.. ..-+ ....|.-+++.||||+|||++++.++.+ .+
T Consensus 180 ~~f~dv~G~~~~k~~l~eiv~~lk~~~~--------~~~~-----g~~~p~gVLL~GPpGTGKT~LAralA~e-----~~ 241 (638)
T CHL00176 180 ITFRDIAGIEEAKEEFEEVVSFLKKPER--------FTAV-----GAKIPKGVLLVGPPGTGKTLLAKAIAGE-----AE 241 (638)
T ss_pred CCHHhccChHHHHHHHHHHHHHHhCHHH--------Hhhc-----cCCCCceEEEECCCCCCHHHHHHHHHHH-----hC
Confidence 4788888888888888888854433210 0011 1234666899999999999999999886 23
Q ss_pred CCeEEecccccc
Q 044777 246 GNAVVIEADAFK 257 (513)
Q Consensus 246 ~~aVvInaDefR 257 (513)
.+++.+++..|.
T Consensus 242 ~p~i~is~s~f~ 253 (638)
T CHL00176 242 VPFFSISGSEFV 253 (638)
T ss_pred CCeeeccHHHHH
Confidence 456667776663
No 271
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.68 E-value=0.0089 Score=57.18 Aligned_cols=40 Identities=23% Similarity=0.296 Sum_probs=29.2
Q ss_pred CCcEEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEecccc
Q 044777 213 RSPVLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADA 255 (513)
Q Consensus 213 ~~P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDe 255 (513)
....++.+.|+|||||||+.+.|+.. .+ ...+-+.++...
T Consensus 24 ~~G~~~~i~G~nGsGKSTLl~~l~G~--~~-~~~G~i~~~g~~ 63 (210)
T cd03269 24 EKGEIFGLLGPNGAGKTTTIRMILGI--IL-PDSGEVLFDGKP 63 (210)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCC--CC-CCceEEEECCCc
Confidence 46679999999999999999999874 11 123446666533
No 272
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=95.67 E-value=0.0072 Score=58.98 Aligned_cols=23 Identities=35% Similarity=0.413 Sum_probs=21.0
Q ss_pred CcEEEEEecCCCCchHHHHHHHh
Q 044777 214 SPVLLFMGGGMGAGKSTVLKDIL 236 (513)
Q Consensus 214 ~P~LILmaG~pGAGKSTla~~Ll 236 (513)
.|.+..+.|||||||||+.+.|.
T Consensus 22 ~~~~~~i~GpNGsGKStll~ai~ 44 (243)
T cd03272 22 SPKHNVVVGRNGSGKSNFFAAIR 44 (243)
T ss_pred CCCcEEEECCCCCCHHHHHHHHH
Confidence 36799999999999999999986
No 273
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=95.67 E-value=0.0087 Score=57.48 Aligned_cols=41 Identities=20% Similarity=0.206 Sum_probs=30.2
Q ss_pred CCcEEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEeccccc
Q 044777 213 RSPVLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADAF 256 (513)
Q Consensus 213 ~~P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDef 256 (513)
....++.+.|+|||||||+.+.|+.. .+ ...+-+.++...+
T Consensus 28 ~~G~~~~l~G~nGsGKSTLl~~i~Gl--~~-~~~G~i~~~g~~~ 68 (218)
T cd03255 28 EKGEFVAIVGPSGSGKSTLLNILGGL--DR-PTSGEVRVDGTDI 68 (218)
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHhCC--cC-CCceeEEECCEeh
Confidence 45678999999999999999999875 22 2245566765444
No 274
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.67 E-value=0.015 Score=56.51 Aligned_cols=41 Identities=22% Similarity=0.272 Sum_probs=30.0
Q ss_pred CCcEEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEeccccc
Q 044777 213 RSPVLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADAF 256 (513)
Q Consensus 213 ~~P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDef 256 (513)
....++.+.|+|||||||+.+.|+.. .+ ...+.+.++...+
T Consensus 29 ~~Ge~~~l~G~nGsGKSTLl~~l~G~--~~-~~~G~i~~~g~~~ 69 (233)
T cd03258 29 PKGEIFGIIGRSGAGKSTLIRCINGL--ER-PTSGSVLVDGTDL 69 (233)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCC--CC-CCCceEEECCEEc
Confidence 45679999999999999999999875 22 2345566665443
No 275
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.67 E-value=0.015 Score=57.08 Aligned_cols=41 Identities=22% Similarity=0.352 Sum_probs=30.6
Q ss_pred CCcEEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEeccccc
Q 044777 213 RSPVLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADAF 256 (513)
Q Consensus 213 ~~P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDef 256 (513)
....++.+.|+|||||||+.+.|+.. .+ ...+.+.++...+
T Consensus 25 ~~Ge~~~i~G~nGsGKSTLl~~l~G~--~~-~~~G~i~~~g~~~ 65 (242)
T cd03295 25 AKGEFLVLIGPSGSGKTTTMKMINRL--IE-PTSGEIFIDGEDI 65 (242)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcC--CC-CCCceEEECCeEc
Confidence 45678999999999999999999864 22 2345567776544
No 276
>PRK04195 replication factor C large subunit; Provisional
Probab=95.66 E-value=0.018 Score=62.84 Aligned_cols=68 Identities=16% Similarity=0.249 Sum_probs=47.8
Q ss_pred HhHHHHhhhhhhHHHHHHHHHHHHHHHhcCCCCCCcccchhcccccCCCCCcEEEEEecCCCCchHHHHHHHhcCccccc
Q 044777 164 REQRFERVTKNLKVARVFTTLVEEMKAMGLAPNDDSQCTEVMAPVALGDRSPVLLFMGGGMGAGKSTVLKDILKEPFWAG 243 (513)
Q Consensus 164 r~~rf~r~~~~~~v~r~~~~~ve~~~~~~~~~~~~~~~~~vl~p~~~~~~~P~LILmaG~pGAGKSTla~~Ll~~~f~~~ 243 (513)
|=..|+.++.+.++...+...++... . ...|..+++.||||+||||+++.++.+.
T Consensus 9 rP~~l~dlvg~~~~~~~l~~~l~~~~-~--------------------g~~~~~lLL~GppG~GKTtla~ala~el---- 63 (482)
T PRK04195 9 RPKTLSDVVGNEKAKEQLREWIESWL-K--------------------GKPKKALLLYGPPGVGKTSLAHALANDY---- 63 (482)
T ss_pred CCCCHHHhcCCHHHHHHHHHHHHHHh-c--------------------CCCCCeEEEECCCCCCHHHHHHHHHHHc----
Confidence 33467777777777777777774322 0 1126688999999999999999999872
Q ss_pred CCCCeEEecccccc
Q 044777 244 AAGNAVVIEADAFK 257 (513)
Q Consensus 244 ~~~~aVvInaDefR 257 (513)
+...+.+|+...+
T Consensus 64 -~~~~ielnasd~r 76 (482)
T PRK04195 64 -GWEVIELNASDQR 76 (482)
T ss_pred -CCCEEEEcccccc
Confidence 3456667765554
No 277
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=95.66 E-value=0.0068 Score=60.56 Aligned_cols=36 Identities=19% Similarity=0.274 Sum_probs=23.7
Q ss_pred EecCCCCchHHHHHHHhcCcccccCCCCeEEecccccc
Q 044777 220 MGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADAFK 257 (513)
Q Consensus 220 maG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDefR 257 (513)
+.||+||||||+.+.+.+. .+..+.+..+||-|=-.
T Consensus 1 ViGpaGSGKTT~~~~~~~~--~~~~~~~~~~vNLDPa~ 36 (238)
T PF03029_consen 1 VIGPAGSGKTTFCKGLSEW--LESNGRDVYIVNLDPAV 36 (238)
T ss_dssp -EESTTSSHHHHHHHHHHH--HTTT-S-EEEEE--TT-
T ss_pred CCCCCCCCHHHHHHHHHHH--HHhccCCceEEEcchHh
Confidence 5799999999999999874 34455677777777443
No 278
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=95.66 E-value=0.0085 Score=60.89 Aligned_cols=41 Identities=29% Similarity=0.289 Sum_probs=30.4
Q ss_pred CCcEEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEeccccc
Q 044777 213 RSPVLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADAF 256 (513)
Q Consensus 213 ~~P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDef 256 (513)
.+..++-+.|||||||||+.+.++.-. ....+-+.+....+
T Consensus 28 ~~G~~~~iiGPNGaGKSTLlK~iLGll---~p~~G~i~~~g~~~ 68 (254)
T COG1121 28 EKGEITALIGPNGAGKSTLLKAILGLL---KPSSGEIKIFGKPV 68 (254)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCC---cCCcceEEEccccc
Confidence 456799999999999999999998731 12345677766544
No 279
>PLN03025 replication factor C subunit; Provisional
Probab=95.66 E-value=0.013 Score=60.26 Aligned_cols=51 Identities=20% Similarity=0.378 Sum_probs=36.9
Q ss_pred HHhHHHHhhhhhhHHHHHHHHHHHHHHHhcCCCCCCcccchhcccccCCCCCcEEEEEecCCCCchHHHHHHHhcC
Q 044777 163 TREQRFERVTKNLKVARVFTTLVEEMKAMGLAPNDDSQCTEVMAPVALGDRSPVLLFMGGGMGAGKSTVLKDILKE 238 (513)
Q Consensus 163 ~r~~rf~r~~~~~~v~r~~~~~ve~~~~~~~~~~~~~~~~~vl~p~~~~~~~P~LILmaG~pGAGKSTla~~Ll~~ 238 (513)
.|=+.|+.+..+..+...+..+++ ....|. +++.||||+||||++..+++.
T Consensus 7 yrP~~l~~~~g~~~~~~~L~~~~~------------------------~~~~~~-lll~Gp~G~GKTtla~~la~~ 57 (319)
T PLN03025 7 YRPTKLDDIVGNEDAVSRLQVIAR------------------------DGNMPN-LILSGPPGTGKTTSILALAHE 57 (319)
T ss_pred cCCCCHHHhcCcHHHHHHHHHHHh------------------------cCCCce-EEEECCCCCCHHHHHHHHHHH
Confidence 344577778777777666666552 123455 567999999999999999876
No 280
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=95.64 E-value=0.016 Score=56.30 Aligned_cols=25 Identities=16% Similarity=0.077 Sum_probs=22.3
Q ss_pred CcEEEEEecCCCCchHHHHHHHhcC
Q 044777 214 SPVLLFMGGGMGAGKSTVLKDILKE 238 (513)
Q Consensus 214 ~P~LILmaG~pGAGKSTla~~Ll~~ 238 (513)
...++.+.|+|||||||+.+.++..
T Consensus 12 ~Ge~~~l~G~NGsGKSTLlk~i~Gl 36 (213)
T PRK15177 12 YHEHIGILAAPGSGKTTLTRLLCGL 36 (213)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4578999999999999999999864
No 281
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=95.64 E-value=0.015 Score=56.32 Aligned_cols=41 Identities=20% Similarity=0.216 Sum_probs=30.3
Q ss_pred CCcEEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEeccccc
Q 044777 213 RSPVLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADAF 256 (513)
Q Consensus 213 ~~P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDef 256 (513)
....++.+.|+|||||||+.+.++.. .+ ...+-+.++...+
T Consensus 34 ~~Ge~~~i~G~nGsGKSTLl~~i~Gl--~~-p~~G~i~~~g~~~ 74 (228)
T PRK10584 34 KRGETIALIGESGSGKSTLLAILAGL--DD-GSSGEVSLVGQPL 74 (228)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHcC--CC-CCCeeEEECCEEc
Confidence 46679999999999999999999875 21 2345566665443
No 282
>PF13245 AAA_19: Part of AAA domain
Probab=95.64 E-value=0.012 Score=48.92 Aligned_cols=24 Identities=33% Similarity=0.498 Sum_probs=18.1
Q ss_pred cEEEEEecCCCCchHHHHHHHhcC
Q 044777 215 PVLLFMGGGMGAGKSTVLKDILKE 238 (513)
Q Consensus 215 P~LILmaG~pGAGKSTla~~Ll~~ 238 (513)
+.+.+|-|||||||||++..+...
T Consensus 10 ~~~~vv~g~pGtGKT~~~~~~i~~ 33 (76)
T PF13245_consen 10 SPLFVVQGPPGTGKTTTLAARIAE 33 (76)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 446788999999999666655554
No 283
>PRK04296 thymidine kinase; Provisional
Probab=95.64 E-value=0.01 Score=56.79 Aligned_cols=37 Identities=27% Similarity=0.336 Sum_probs=28.1
Q ss_pred cEEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEecc
Q 044777 215 PVLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEA 253 (513)
Q Consensus 215 P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvIna 253 (513)
..++++.|+||+||||++..++.. ....+..++++.+
T Consensus 2 g~i~litG~~GsGKTT~~l~~~~~--~~~~g~~v~i~k~ 38 (190)
T PRK04296 2 AKLEFIYGAMNSGKSTELLQRAYN--YEERGMKVLVFKP 38 (190)
T ss_pred cEEEEEECCCCCHHHHHHHHHHHH--HHHcCCeEEEEec
Confidence 358899999999999999988775 3234456666755
No 284
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.63 E-value=0.015 Score=56.56 Aligned_cols=41 Identities=24% Similarity=0.315 Sum_probs=30.0
Q ss_pred CCcEEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEeccccc
Q 044777 213 RSPVLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADAF 256 (513)
Q Consensus 213 ~~P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDef 256 (513)
....++.+.|+|||||||+++.|+.. .. ...+-+.++...+
T Consensus 25 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl--~~-~~~G~i~~~g~~~ 65 (241)
T cd03256 25 NPGEFVALIGPSGAGKSTLLRCLNGL--VE-PTSGSVLIDGTDI 65 (241)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCC--cC-CCCceEEECCEec
Confidence 45679999999999999999999864 22 2245567765443
No 285
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.63 E-value=0.017 Score=64.55 Aligned_cols=56 Identities=20% Similarity=0.258 Sum_probs=45.3
Q ss_pred HHHHHHhHHHHhhhhhhHHHHHHHHHHHHHHHhcCCCCCCcccchhcccccCCCCCcEEEEEecCCCCchHHHHHHHhcC
Q 044777 159 VMQATREQRFERVTKNLKVARVFTTLVEEMKAMGLAPNDDSQCTEVMAPVALGDRSPVLLFMGGGMGAGKSTVLKDILKE 238 (513)
Q Consensus 159 v~~a~r~~rf~r~~~~~~v~r~~~~~ve~~~~~~~~~~~~~~~~~vl~p~~~~~~~P~LILmaG~pGAGKSTla~~Ll~~ 238 (513)
+.+..|=+.|+.++....+.+.|...++ ..+.|..+|+.|++|+||||+++.+++.
T Consensus 6 La~KyRP~~f~diiGq~~~v~~L~~~i~------------------------~~rl~ha~Lf~Gp~GvGKTTlAr~lAk~ 61 (546)
T PRK14957 6 LARKYRPQSFAEVAGQQHALNSLVHALE------------------------TQKVHHAYLFTGTRGVGKTTLGRLLAKC 61 (546)
T ss_pred HHHHHCcCcHHHhcCcHHHHHHHHHHHH------------------------cCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3455667899999999998888887772 1235678999999999999999999875
No 286
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=95.63 E-value=0.016 Score=59.50 Aligned_cols=55 Identities=20% Similarity=0.351 Sum_probs=43.3
Q ss_pred HHHHHhHHHHhhhhhhHHHHHHHHHHHHHHHhcCCCCCCcccchhcccccCCCCCcEEEEEecCCCCchHHHHHHHhcC
Q 044777 160 MQATREQRFERVTKNLKVARVFTTLVEEMKAMGLAPNDDSQCTEVMAPVALGDRSPVLLFMGGGMGAGKSTVLKDILKE 238 (513)
Q Consensus 160 ~~a~r~~rf~r~~~~~~v~r~~~~~ve~~~~~~~~~~~~~~~~~vl~p~~~~~~~P~LILmaG~pGAGKSTla~~Ll~~ 238 (513)
-+..|-+.|+.++...++.+.+...+. ...-|..+++.|++|.||||+++.+++.
T Consensus 5 ~~~~rp~~~~~iig~~~~~~~l~~~~~------------------------~~~~~~~~Ll~G~~G~GKt~~a~~la~~ 59 (355)
T TIGR02397 5 ARKYRPQTFEDVIGQEHIVQTLKNAIK------------------------NGRIAHAYLFSGPRGTGKTSIARIFAKA 59 (355)
T ss_pred HHHhCCCcHhhccCcHHHHHHHHHHHH------------------------cCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 345666788888888888877777772 1235778999999999999999999876
No 287
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=95.62 E-value=0.016 Score=55.91 Aligned_cols=50 Identities=20% Similarity=0.330 Sum_probs=33.5
Q ss_pred hcccccCCCCCcEEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEeccccc
Q 044777 204 VMAPVALGDRSPVLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADAF 256 (513)
Q Consensus 204 vl~p~~~~~~~P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDef 256 (513)
++..+.-.-....++.+.|+|||||||+.+.|+.. .. ...+-+.++...+
T Consensus 20 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~--~~-~~~G~i~~~g~~~ 69 (228)
T cd03257 20 ALDDVSFSIKKGETLGLVGESGSGKSTLARAILGL--LK-PTSGSIIFDGKDL 69 (228)
T ss_pred eecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCC--CC-CCCceEEECCEEc
Confidence 33333333346679999999999999999999875 22 2345566665443
No 288
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.62 E-value=0.0096 Score=57.06 Aligned_cols=41 Identities=22% Similarity=0.285 Sum_probs=29.9
Q ss_pred CCcEEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEeccccc
Q 044777 213 RSPVLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADAF 256 (513)
Q Consensus 213 ~~P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDef 256 (513)
....++.+.|+|||||||+.+.|+.. .+ ...+-+.++...+
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~l~G~--~~-p~~G~i~~~g~~~ 64 (213)
T cd03259 24 EPGEFLALLGPSGCGKTTLLRLIAGL--ER-PDSGEILIDGRDV 64 (213)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCC--CC-CCCeEEEECCEEc
Confidence 45678999999999999999999864 22 2245566765444
No 289
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=95.62 E-value=0.016 Score=55.63 Aligned_cols=39 Identities=31% Similarity=0.382 Sum_probs=29.0
Q ss_pred CCcEEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEeccc
Q 044777 213 RSPVLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEAD 254 (513)
Q Consensus 213 ~~P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaD 254 (513)
....++.+.|+|||||||+.+.|+.. .. ...+-+.++.-
T Consensus 23 ~~Ge~~~l~G~nGsGKSTLl~~l~G~--~~-p~~G~i~~~g~ 61 (213)
T cd03235 23 KPGEFLAIVGPNGAGKSTLLKAILGL--LK-PTSGSIRVFGK 61 (213)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHcCC--CC-CCCCEEEECCc
Confidence 45678999999999999999999764 22 23455666653
No 290
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=95.62 E-value=0.017 Score=56.07 Aligned_cols=41 Identities=17% Similarity=0.258 Sum_probs=30.0
Q ss_pred CCcEEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEeccccc
Q 044777 213 RSPVLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADAF 256 (513)
Q Consensus 213 ~~P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDef 256 (513)
....++.+.|+|||||||+.+.|+.. .+ ...+-+.++...+
T Consensus 24 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl--~~-p~~G~i~~~g~~~ 64 (232)
T cd03218 24 KQGEIVGLLGPNGAGKTTTFYMIVGL--VK-PDSGKILLDGQDI 64 (232)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCC--CC-CCCcEEEECCEec
Confidence 45678999999999999999999864 21 2245566765443
No 291
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=95.61 E-value=0.017 Score=54.18 Aligned_cols=41 Identities=17% Similarity=0.278 Sum_probs=30.6
Q ss_pred CCcEEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEeccccc
Q 044777 213 RSPVLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADAF 256 (513)
Q Consensus 213 ~~P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDef 256 (513)
....++.+.|+|||||||+.+.++.. .+ ...+.+.++...+
T Consensus 26 ~~Ge~~~i~G~nGsGKStLl~~l~G~--~~-~~~G~i~~~g~~~ 66 (178)
T cd03247 26 KQGEKIALLGRSGSGKSTLLQLLTGD--LK-PQQGEITLDGVPV 66 (178)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcc--CC-CCCCEEEECCEEH
Confidence 45678999999999999999999875 22 2345567776443
No 292
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.61 E-value=0.018 Score=63.83 Aligned_cols=55 Identities=24% Similarity=0.332 Sum_probs=44.9
Q ss_pred HHHHhHHHHhhhhhhHHHHHHHHHHHHHHHhcCCCCCCcccchhcccccCCCCCcEEEEEecCCCCchHHHHHHHhcCc
Q 044777 161 QATREQRFERVTKNLKVARVFTTLVEEMKAMGLAPNDDSQCTEVMAPVALGDRSPVLLFMGGGMGAGKSTVLKDILKEP 239 (513)
Q Consensus 161 ~a~r~~rf~r~~~~~~v~r~~~~~ve~~~~~~~~~~~~~~~~~vl~p~~~~~~~P~LILmaG~pGAGKSTla~~Ll~~~ 239 (513)
+.-|=+.|..++....+.+.|...++ ..+-|..+++.|++|+||||+++.+++..
T Consensus 8 ~k~rP~~f~divGq~~v~~~L~~~i~------------------------~~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l 62 (527)
T PRK14969 8 RKWRPKSFSELVGQEHVVRALTNALE------------------------QQRLHHAYLFTGTRGVGKTTLARILAKSL 62 (527)
T ss_pred HHhCCCcHHHhcCcHHHHHHHHHHHH------------------------cCCCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 33455789999999999998888882 13457789999999999999999998863
No 293
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=95.59 E-value=0.028 Score=64.35 Aligned_cols=74 Identities=18% Similarity=0.260 Sum_probs=45.7
Q ss_pred HHHHhhhhhhHHHHHHHHHHHHHHHhcCCCCCCcccchhcccccCCCCCcEEEEEecCCCCchHHHHHHHhcCcccccCC
Q 044777 166 QRFERVTKNLKVARVFTTLVEEMKAMGLAPNDDSQCTEVMAPVALGDRSPVLLFMGGGMGAGKSTVLKDILKEPFWAGAA 245 (513)
Q Consensus 166 ~rf~r~~~~~~v~r~~~~~ve~~~~~~~~~~~~~~~~~vl~p~~~~~~~P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~ 245 (513)
-.|+.+..-.+++..+.+.++--. .. .++.... .-..|.-+++.|+||+||||+++.++... +
T Consensus 175 ~~~~di~G~~~~~~~l~~~i~~~~-------~~---~~~~~~~--gi~~~~giLL~GppGtGKT~laraia~~~-----~ 237 (733)
T TIGR01243 175 VTYEDIGGLKEAKEKIREMVELPM-------KH---PELFEHL--GIEPPKGVLLYGPPGTGKTLLAKAVANEA-----G 237 (733)
T ss_pred CCHHHhcCHHHHHHHHHHHHHHHh-------hC---HHHHHhc--CCCCCceEEEECCCCCChHHHHHHHHHHh-----C
Confidence 467777766666666666663100 00 0111100 11356778999999999999999998862 3
Q ss_pred CCeEEeccccc
Q 044777 246 GNAVVIEADAF 256 (513)
Q Consensus 246 ~~aVvInaDef 256 (513)
...+.|++.++
T Consensus 238 ~~~i~i~~~~i 248 (733)
T TIGR01243 238 AYFISINGPEI 248 (733)
T ss_pred CeEEEEecHHH
Confidence 45666776655
No 294
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.58 E-value=0.017 Score=63.93 Aligned_cols=57 Identities=19% Similarity=0.267 Sum_probs=46.6
Q ss_pred HHHHHHhHHHHhhhhhhHHHHHHHHHHHHHHHhcCCCCCCcccchhcccccCCCCCcEEEEEecCCCCchHHHHHHHhcC
Q 044777 159 VMQATREQRFERVTKNLKVARVFTTLVEEMKAMGLAPNDDSQCTEVMAPVALGDRSPVLLFMGGGMGAGKSTVLKDILKE 238 (513)
Q Consensus 159 v~~a~r~~rf~r~~~~~~v~r~~~~~ve~~~~~~~~~~~~~~~~~vl~p~~~~~~~P~LILmaG~pGAGKSTla~~Ll~~ 238 (513)
+.+..|=+.|+.++....+.+.+...++ ..+-|..+++.|++|.||||+++.+++.
T Consensus 6 l~~kyRP~~f~divGq~~v~~~L~~~~~------------------------~~~l~ha~Lf~Gp~G~GKTt~A~~lAk~ 61 (509)
T PRK14958 6 LARKWRPRCFQEVIGQAPVVRALSNALD------------------------QQYLHHAYLFTGTRGVGKTTISRILAKC 61 (509)
T ss_pred HHHHHCCCCHHHhcCCHHHHHHHHHHHH------------------------hCCCCeeEEEECCCCCCHHHHHHHHHHH
Confidence 3445566799999999999998888883 2345779999999999999999999986
Q ss_pred c
Q 044777 239 P 239 (513)
Q Consensus 239 ~ 239 (513)
.
T Consensus 62 l 62 (509)
T PRK14958 62 L 62 (509)
T ss_pred h
Confidence 3
No 295
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=95.57 E-value=0.0098 Score=56.86 Aligned_cols=40 Identities=33% Similarity=0.448 Sum_probs=29.2
Q ss_pred CCcEEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEecccc
Q 044777 213 RSPVLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADA 255 (513)
Q Consensus 213 ~~P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDe 255 (513)
....++.+.|+|||||||+.+.++.. .+ ...+-+.++...
T Consensus 25 ~~G~~~~i~G~nGsGKSTLl~~l~G~--~~-~~~G~i~~~g~~ 64 (214)
T cd03292 25 SAGEFVFLVGPSGAGKSTLLKLIYKE--EL-PTSGTIRVNGQD 64 (214)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcC--CC-CCceEEEECCEE
Confidence 45678999999999999999999874 22 223556665543
No 296
>COG3911 Predicted ATPase [General function prediction only]
Probab=95.57 E-value=0.012 Score=56.00 Aligned_cols=27 Identities=33% Similarity=0.592 Sum_probs=23.6
Q ss_pred CcEEEEEecCCCCchHHHHHHHhcCcc
Q 044777 214 SPVLLFMGGGMGAGKSTVLKDILKEPF 240 (513)
Q Consensus 214 ~P~LILmaG~pGAGKSTla~~Ll~~~f 240 (513)
+-..+++.|+|||||||+.+.|...+|
T Consensus 8 R~~~fIltGgpGaGKTtLL~aLa~~Gf 34 (183)
T COG3911 8 RHKRFILTGGPGAGKTTLLAALARAGF 34 (183)
T ss_pred cceEEEEeCCCCCcHHHHHHHHHHcCc
Confidence 447899999999999999999998743
No 297
>PRK14729 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Provisional
Probab=95.57 E-value=0.033 Score=57.83 Aligned_cols=35 Identities=29% Similarity=0.434 Sum_probs=30.1
Q ss_pred CcEEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEeccccc
Q 044777 214 SPVLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADAF 256 (513)
Q Consensus 214 ~P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDef 256 (513)
.+.+++|.||.|||||.++-.|++. +..+||+|..
T Consensus 3 ~~~ii~I~GpTasGKS~LAl~LA~~--------~~eIIsaDS~ 37 (300)
T PRK14729 3 ENKIVFIFGPTAVGKSNILFHFPKG--------KAEIINVDSI 37 (300)
T ss_pred CCcEEEEECCCccCHHHHHHHHHHh--------CCcEEeccHH
Confidence 3458999999999999999999986 2379999987
No 298
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.57 E-value=0.016 Score=67.92 Aligned_cols=56 Identities=20% Similarity=0.264 Sum_probs=45.6
Q ss_pred HHHHHhHHHHhhhhhhHHHHHHHHHHHHHHHhcCCCCCCcccchhcccccCCCCCcEEEEEecCCCCchHHHHHHHhcCc
Q 044777 160 MQATREQRFERVTKNLKVARVFTTLVEEMKAMGLAPNDDSQCTEVMAPVALGDRSPVLLFMGGGMGAGKSTVLKDILKEP 239 (513)
Q Consensus 160 ~~a~r~~rf~r~~~~~~v~r~~~~~ve~~~~~~~~~~~~~~~~~vl~p~~~~~~~P~LILmaG~pGAGKSTla~~Ll~~~ 239 (513)
-+..|=++|+.++....+.+.|...+. ..+-|..+|+.|++|+||||+++.+++..
T Consensus 7 aeKyRP~tFddIIGQe~Iv~~LknaI~------------------------~~rl~HAyLFtGPpGtGKTTLARiLAk~L 62 (944)
T PRK14949 7 ARKWRPATFEQMVGQSHVLHALTNALT------------------------QQRLHHAYLFTGTRGVGKTSLARLFAKGL 62 (944)
T ss_pred HHHhCCCCHHHhcCcHHHHHHHHHHHH------------------------hCCCCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 344555789999999999888887772 12457899999999999999999999874
No 299
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=95.57 E-value=0.07 Score=56.40 Aligned_cols=91 Identities=16% Similarity=0.138 Sum_probs=52.8
Q ss_pred CcEEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEe-cccccccchhhhhhhhccccCchhhHHHHHhHhHHHHHHHH
Q 044777 214 SPVLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVI-EADAFKESDVIYRALSSRSHVDMLQTAELVHQSSTDAASSL 292 (513)
Q Consensus 214 ~P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvI-naDefR~~~p~y~~l~~~G~~Dp~qaae~v~~eAtrlA~~l 292 (513)
....++++|++||||||+.+.|+.. ++. ....+.| ++.++.-.++..-.+.- ..+ +. ....--+..+
T Consensus 161 ~~~nilI~G~tGSGKTTll~aLl~~--i~~-~~rivtiEd~~El~l~~~~~v~l~~--~~~-----~~--~~~~~t~~~l 228 (344)
T PRK13851 161 GRLTMLLCGPTGSGKTTMSKTLISA--IPP-QERLITIEDTLELVIPHENHVRLLY--SKN-----GA--GLGAVTAEHL 228 (344)
T ss_pred cCCeEEEECCCCccHHHHHHHHHcc--cCC-CCCEEEECCCccccCCCCCEEEEEe--ecc-----cc--CcCccCHHHH
Confidence 3457899999999999999999986 332 2344444 55555311111000000 000 00 0001123467
Q ss_pred HHHHHHCCCcEEEECcCCChHHHH
Q 044777 293 LVTALNEGRDVIMDGTLSWVPFVV 316 (513)
Q Consensus 293 i~~aL~~GrsVIlDtTlS~~~~~~ 316 (513)
+..+|...-++|+=+=.++.+-+.
T Consensus 229 l~~~LR~~pD~IivGEiR~~ea~~ 252 (344)
T PRK13851 229 LQASLRMRPDRILLGEMRDDAAWA 252 (344)
T ss_pred HHHHhcCCCCeEEEEeeCcHHHHH
Confidence 888999999999988888876443
No 300
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=95.56 E-value=0.019 Score=54.68 Aligned_cols=41 Identities=22% Similarity=0.232 Sum_probs=30.6
Q ss_pred CCcEEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEeccccc
Q 044777 213 RSPVLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADAF 256 (513)
Q Consensus 213 ~~P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDef 256 (513)
....++.+.|+|||||||+.+.++.. +. ...+-+.++...+
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~l~G~--~~-~~~G~i~~~g~~~ 64 (198)
T TIGR01189 24 NAGEALQVTGPNGIGKTTLLRILAGL--LR-PDSGEVRWNGTAL 64 (198)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCC--CC-CCccEEEECCEEc
Confidence 45678999999999999999999875 22 2345567766544
No 301
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=95.55 E-value=0.015 Score=60.57 Aligned_cols=121 Identities=21% Similarity=0.179 Sum_probs=71.3
Q ss_pred cchhcccccCCCCCcEEEEEecCCCCchHHHHHHHhcCcccccCCCCeEE--ecc-----------cccccc----hhh-
Q 044777 201 CTEVMAPVALGDRSPVLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVV--IEA-----------DAFKES----DVI- 262 (513)
Q Consensus 201 ~~~vl~p~~~~~~~P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVv--Ina-----------DefR~~----~p~- 262 (513)
..+++.-..+...+|.++=|.|+|||||||++..|..+ +...+..+-+ ||| |-+|.+ +|.
T Consensus 37 a~~ll~~l~p~tG~a~viGITG~PGaGKSTli~~L~~~--l~~~G~rVaVlAVDPSSp~TGGsiLGDRiRM~~~~~~~~v 114 (323)
T COG1703 37 ARELLRALYPRTGNAHVIGITGVPGAGKSTLIEALGRE--LRERGHRVAVLAVDPSSPFTGGSILGDRIRMQRLAVDPGV 114 (323)
T ss_pred HHHHHHHHhhcCCCCcEEEecCCCCCchHHHHHHHHHH--HHHCCcEEEEEEECCCCCCCCccccccHhhHHhhccCCCe
Confidence 35777777677788999999999999999999999876 3333443333 343 444421 110
Q ss_pred -hhhhhccccCchhhHHHHHhHhHHHHHHHHHHHHHHCCCcE-EEECcCCChHHHHHHHHHHhhhhhcccccccccc
Q 044777 263 -YRALSSRSHVDMLQTAELVHQSSTDAASSLLVTALNEGRDV-IMDGTLSWVPFVVQTITMARNVHRHRYRMGVGYK 337 (513)
Q Consensus 263 -y~~l~~~G~~Dp~qaae~v~~eAtrlA~~li~~aL~~GrsV-IlDtTlS~~~~~~qii~~Ar~~h~~~y~~g~GYk 337 (513)
.+.+.++|.- .. -++.+...+..+=..|+++ |+||+--+.+-.+ ++.|+ +.-.|.|-+|+=
T Consensus 115 FiRs~~srG~l-----GG-----lS~at~~~i~~ldAaG~DvIIVETVGvGQsev~-I~~~a---Dt~~~v~~pg~G 177 (323)
T COG1703 115 FIRSSPSRGTL-----GG-----LSRATREAIKLLDAAGYDVIIVETVGVGQSEVD-IANMA---DTFLVVMIPGAG 177 (323)
T ss_pred EEeecCCCccc-----hh-----hhHHHHHHHHHHHhcCCCEEEEEecCCCcchhH-Hhhhc---ceEEEEecCCCC
Confidence 0111111110 11 1133334455555679965 5688887766644 55554 666777777754
No 302
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=95.55 E-value=0.019 Score=54.95 Aligned_cols=42 Identities=19% Similarity=0.257 Sum_probs=31.4
Q ss_pred CCCcEEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEeccccc
Q 044777 212 DRSPVLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADAF 256 (513)
Q Consensus 212 ~~~P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDef 256 (513)
-....++.+.|+|||||||+.+.|+.. .+ ...+-+.++...+
T Consensus 24 i~~Ge~~~l~G~nGsGKSTLl~~l~G~--~~-p~~G~v~~~g~~~ 65 (204)
T PRK13538 24 LNAGELVQIEGPNGAGKTSLLRILAGL--AR-PDAGEVLWQGEPI 65 (204)
T ss_pred ECCCcEEEEECCCCCCHHHHHHHHhCC--CC-CCCcEEEECCEEc
Confidence 345679999999999999999999875 22 2345677776554
No 303
>PRK06620 hypothetical protein; Validated
Probab=95.55 E-value=0.14 Score=50.22 Aligned_cols=82 Identities=15% Similarity=0.137 Sum_probs=44.9
Q ss_pred EEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEecccccccchhhhhhhhccccCchhhHHHHHhHhHHHHHHHHHHH
Q 044777 216 VLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADAFKESDVIYRALSSRSHVDMLQTAELVHQSSTDAASSLLVT 295 (513)
Q Consensus 216 ~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDefR~~~p~y~~l~~~G~~Dp~qaae~v~~eAtrlA~~li~~ 295 (513)
..+++.|++|+||||+++.+... .+..+++...... ..++...-. .-|- +|.........++..
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~-------~~~~~~~~~~~~~--~~~~~~d~l-liDd------i~~~~~~~lf~l~N~ 108 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNL-------SNAYIIKDIFFNE--EILEKYNAF-IIED------IENWQEPALLHIFNI 108 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhc-------cCCEEcchhhhch--hHHhcCCEE-EEec------cccchHHHHHHHHHH
Confidence 45789999999999999988765 2344444322211 011100000 0010 111111233456677
Q ss_pred HHHCCCcEEEECcCCChH
Q 044777 296 ALNEGRDVIMDGTLSWVP 313 (513)
Q Consensus 296 aL~~GrsVIlDtTlS~~~ 313 (513)
+.+.|..+++=++-..+.
T Consensus 109 ~~e~g~~ilits~~~p~~ 126 (214)
T PRK06620 109 INEKQKYLLLTSSDKSRN 126 (214)
T ss_pred HHhcCCEEEEEcCCCccc
Confidence 788898888887765553
No 304
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=95.53 E-value=0.018 Score=55.83 Aligned_cols=41 Identities=17% Similarity=0.318 Sum_probs=30.1
Q ss_pred CCcEEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEeccccc
Q 044777 213 RSPVLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADAF 256 (513)
Q Consensus 213 ~~P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDef 256 (513)
.+..++.+.|+|||||||+.+.|+.. .+ ...+-+.++...+
T Consensus 24 ~~Ge~~~l~G~nGsGKSTLl~~l~G~--~~-~~~G~i~~~g~~~ 64 (230)
T TIGR03410 24 PKGEVTCVLGRNGVGKTTLLKTLMGL--LP-VKSGSIRLDGEDI 64 (230)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCC--CC-CCCCEEEECCEEC
Confidence 45679999999999999999999864 11 2245567765443
No 305
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=95.52 E-value=0.018 Score=55.38 Aligned_cols=41 Identities=17% Similarity=0.300 Sum_probs=30.5
Q ss_pred CCcEEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEeccccc
Q 044777 213 RSPVLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADAF 256 (513)
Q Consensus 213 ~~P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDef 256 (513)
....++.+.|+|||||||+.+.|+.. +. ...+-+.++...+
T Consensus 28 ~~Ge~~~i~G~nGsGKSTLl~~l~G~--~~-~~~G~i~~~g~~~ 68 (221)
T cd03244 28 KPGEKVGIVGRTGSGKSSLLLALFRL--VE-LSSGSILIDGVDI 68 (221)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHcC--CC-CCCCEEEECCEEh
Confidence 45679999999999999999999864 32 2345566766544
No 306
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.52 E-value=0.018 Score=56.59 Aligned_cols=41 Identities=24% Similarity=0.329 Sum_probs=30.8
Q ss_pred CCcEEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEeccccc
Q 044777 213 RSPVLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADAF 256 (513)
Q Consensus 213 ~~P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDef 256 (513)
....++.+.|+|||||||+.+.|+.. .. ...+-+.++...+
T Consensus 27 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl--~~-p~~G~i~~~g~~i 67 (241)
T PRK14250 27 EGGAIYTIVGPSGAGKSTLIKLINRL--ID-PTEGSILIDGVDI 67 (241)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCC--CC-CCCcEEEECCEEh
Confidence 45678999999999999999999875 22 2345677776544
No 307
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=95.52 E-value=0.011 Score=56.70 Aligned_cols=42 Identities=21% Similarity=0.308 Sum_probs=29.9
Q ss_pred CCCcEEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEeccccc
Q 044777 212 DRSPVLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADAF 256 (513)
Q Consensus 212 ~~~P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDef 256 (513)
-.+..++.+.|+|||||||+.+.|+.. .+ ...+-+.++...+
T Consensus 23 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl--~~-~~~G~i~~~g~~~ 64 (222)
T cd03224 23 VPEGEIVALLGRNGAGKTTLLKTIMGL--LP-PRSGSIRFDGRDI 64 (222)
T ss_pred EcCCeEEEEECCCCCCHHHHHHHHhCC--CC-CCCceEEECCEEc
Confidence 346679999999999999999999764 11 1234566665433
No 308
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=95.51 E-value=0.023 Score=58.60 Aligned_cols=58 Identities=21% Similarity=0.271 Sum_probs=43.3
Q ss_pred HHHHhHHHHhhhhhhHHHHHHHHHHHHHHHhcCCCCCCcccchhcccccCCCCCcEEEEEecCCCCchHHHHHHHhcC
Q 044777 161 QATREQRFERVTKNLKVARVFTTLVEEMKAMGLAPNDDSQCTEVMAPVALGDRSPVLLFMGGGMGAGKSTVLKDILKE 238 (513)
Q Consensus 161 ~a~r~~rf~r~~~~~~v~r~~~~~ve~~~~~~~~~~~~~~~~~vl~p~~~~~~~P~LILmaG~pGAGKSTla~~Ll~~ 238 (513)
..+|=..|+..+...+++..+..+++..+.- ...|.-+++.||||+||||+++.++..
T Consensus 17 ~~~rP~~~~~~vG~~~~~~~l~~~l~~~~~~--------------------~~~~~~~ll~GppG~GKT~la~~ia~~ 74 (328)
T PRK00080 17 RSLRPKSLDEFIGQEKVKENLKIFIEAAKKR--------------------GEALDHVLLYGPPGLGKTTLANIIANE 74 (328)
T ss_pred hhcCcCCHHHhcCcHHHHHHHHHHHHHHHhc--------------------CCCCCcEEEECCCCccHHHHHHHHHHH
Confidence 4456678888888888888888887432211 123446788999999999999999887
No 309
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.51 E-value=0.01 Score=57.23 Aligned_cols=40 Identities=23% Similarity=0.320 Sum_probs=29.0
Q ss_pred CCcEEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEecccc
Q 044777 213 RSPVLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADA 255 (513)
Q Consensus 213 ~~P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDe 255 (513)
....++.+.|+|||||||+.+.|+.. .. ...+-+.++...
T Consensus 28 ~~G~~~~i~G~nGsGKSTLl~~l~Gl--~~-~~~G~i~~~g~~ 67 (220)
T cd03293 28 EEGEFVALVGPSGCGKSTLLRIIAGL--ER-PTSGEVLVDGEP 67 (220)
T ss_pred eCCcEEEEECCCCCCHHHHHHHHhCC--CC-CCceEEEECCEE
Confidence 35678999999999999999999864 22 224556665533
No 310
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.51 E-value=0.019 Score=63.11 Aligned_cols=54 Identities=19% Similarity=0.215 Sum_probs=43.5
Q ss_pred HHHHhHHHHhhhhhhHHHHHHHHHHHHHHHhcCCCCCCcccchhcccccCCCCCcEEEEEecCCCCchHHHHHHHhcC
Q 044777 161 QATREQRFERVTKNLKVARVFTTLVEEMKAMGLAPNDDSQCTEVMAPVALGDRSPVLLFMGGGMGAGKSTVLKDILKE 238 (513)
Q Consensus 161 ~a~r~~rf~r~~~~~~v~r~~~~~ve~~~~~~~~~~~~~~~~~vl~p~~~~~~~P~LILmaG~pGAGKSTla~~Ll~~ 238 (513)
+..|=+.|+.++....+.+.+...+. ..+-|..+++.|++|+||||+++.+++.
T Consensus 10 ~KyRP~~f~dvVGQe~iv~~L~~~i~------------------------~~ri~ha~Lf~GP~GtGKTTlAriLAk~ 63 (484)
T PRK14956 10 RKYRPQFFRDVIHQDLAIGALQNALK------------------------SGKIGHAYIFFGPRGVGKTTIARILAKR 63 (484)
T ss_pred HHhCCCCHHHHhChHHHHHHHHHHHH------------------------cCCCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 34455789999998888888877772 1234678999999999999999999886
No 311
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=95.51 E-value=0.011 Score=57.56 Aligned_cols=41 Identities=22% Similarity=0.270 Sum_probs=30.1
Q ss_pred CCcEEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEeccccc
Q 044777 213 RSPVLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADAF 256 (513)
Q Consensus 213 ~~P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDef 256 (513)
....++.+.|+|||||||+.+.|+.. .+ ...+-+.++...+
T Consensus 24 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl--~~-~~~G~i~~~g~~~ 64 (236)
T cd03219 24 RPGEIHGLIGPNGAGKTTLFNLISGF--LR-PTSGSVLFDGEDI 64 (236)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHcCC--CC-CCCceEEECCEEC
Confidence 45679999999999999999999864 21 1245566766544
No 312
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=95.50 E-value=0.0097 Score=58.55 Aligned_cols=25 Identities=32% Similarity=0.724 Sum_probs=22.0
Q ss_pred CcEEEEEecCCCCchHHHHHHHhcC
Q 044777 214 SPVLLFMGGGMGAGKSTVLKDILKE 238 (513)
Q Consensus 214 ~P~LILmaG~pGAGKSTla~~Ll~~ 238 (513)
.+.++++.|+||+||||+++.+...
T Consensus 42 ~~~~~~l~G~~G~GKTtl~~~l~~~ 66 (269)
T TIGR03015 42 REGFILITGEVGAGKTTLIRNLLKR 66 (269)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHh
Confidence 3557899999999999999999876
No 313
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=95.49 E-value=0.011 Score=56.84 Aligned_cols=41 Identities=29% Similarity=0.356 Sum_probs=29.8
Q ss_pred CCcEEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEeccccc
Q 044777 213 RSPVLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADAF 256 (513)
Q Consensus 213 ~~P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDef 256 (513)
....++.+.|+|||||||+.+.|+.. .+ ...+-+.++...+
T Consensus 27 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl--~~-~~~G~i~~~g~~~ 67 (216)
T TIGR00960 27 TKGEMVFLVGHSGAGKSTFLKLILGI--EK-PTRGKIRFNGQDL 67 (216)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCC--CC-CCceEEEECCEeh
Confidence 45678999999999999999999874 22 2245566665433
No 314
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=95.49 E-value=0.0094 Score=51.91 Aligned_cols=25 Identities=32% Similarity=0.632 Sum_probs=18.9
Q ss_pred CcEEEEEecCCCCchHHHHHHHhcC
Q 044777 214 SPVLLFMGGGMGAGKSTVLKDILKE 238 (513)
Q Consensus 214 ~P~LILmaG~pGAGKSTla~~Ll~~ 238 (513)
...++++.|++|+||||+++.+...
T Consensus 3 ~~~~~~i~G~~G~GKT~~~~~~~~~ 27 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLIKRLARQ 27 (131)
T ss_dssp ----EEEEE-TTSSHHHHHHHHHHH
T ss_pred CCcccEEEcCCCCCHHHHHHHHHHH
Confidence 4678999999999999999999885
No 315
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=95.48 E-value=0.019 Score=56.14 Aligned_cols=40 Identities=25% Similarity=0.302 Sum_probs=29.5
Q ss_pred CcEEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEeccccc
Q 044777 214 SPVLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADAF 256 (513)
Q Consensus 214 ~P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDef 256 (513)
...++.+.|+|||||||+.+.++.. .. ...+-+.++...+
T Consensus 10 ~Ge~~~i~G~nGsGKSTLl~~l~Gl--~~-p~~G~i~~~g~~~ 49 (230)
T TIGR01184 10 QGEFISLIGHSGCGKSTLLNLISGL--AQ-PTSGGVILEGKQI 49 (230)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC--CC-CCCceEEECCEEC
Confidence 4568999999999999999999865 21 2345567765444
No 316
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=95.48 E-value=0.043 Score=60.42 Aligned_cols=89 Identities=18% Similarity=0.232 Sum_probs=56.4
Q ss_pred EEEEecCCCCchHHHHHHHhcCcccccCCCCeEEe-cccccccchhhhhhhhccccCchhhHHHHHhHhHHHHHHHHHHH
Q 044777 217 LLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVI-EADAFKESDVIYRALSSRSHVDMLQTAELVHQSSTDAASSLLVT 295 (513)
Q Consensus 217 LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvI-naDefR~~~p~y~~l~~~G~~Dp~qaae~v~~eAtrlA~~li~~ 295 (513)
+++++|++||||||+...++.. ......+++.| |+-++. ++. .... . +....+.-....+..
T Consensus 244 lilitGptGSGKTTtL~a~L~~--l~~~~~~iiTiEDpvE~~--~~~---~~q~---~-------v~~~~g~~f~~~lr~ 306 (486)
T TIGR02533 244 IILVTGPTGSGKTTTLYAALSR--LNTPERNILTVEDPVEYQ--IEG---IGQI---Q-------VNPKIGLTFAAGLRA 306 (486)
T ss_pred EEEEEcCCCCCHHHHHHHHHhc--cCCCCCcEEEEcCCeeee--cCC---CceE---E-------EccccCccHHHHHHH
Confidence 8999999999999999988775 22223445555 555552 111 1110 0 001111123456778
Q ss_pred HHHCCCcEEEECcCCChHHHHHHHHHH
Q 044777 296 ALNEGRDVIMDGTLSWVPFVVQTITMA 322 (513)
Q Consensus 296 aL~~GrsVIlDtTlS~~~~~~qii~~A 322 (513)
+|.+.=++|+=+=.++++-....++.|
T Consensus 307 ~LR~dPDvI~vGEiRd~eta~~a~~aa 333 (486)
T TIGR02533 307 ILRQDPDIIMVGEIRDLETAQIAIQAS 333 (486)
T ss_pred HHhcCCCEEEEeCCCCHHHHHHHHHHH
Confidence 999999999999999988766655544
No 317
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=95.48 E-value=0.021 Score=53.64 Aligned_cols=41 Identities=22% Similarity=0.349 Sum_probs=30.9
Q ss_pred CCcEEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEeccccc
Q 044777 213 RSPVLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADAF 256 (513)
Q Consensus 213 ~~P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDef 256 (513)
.+..++.+.|+|||||||+.+.+... .+ ...+.+.++...+
T Consensus 23 ~~G~~~~l~G~nGsGKStLl~~i~G~--~~-~~~G~v~~~g~~~ 63 (180)
T cd03214 23 EAGEIVGILGPNGAGKSTLLKTLAGL--LK-PSSGEILLDGKDL 63 (180)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCC--CC-CCCcEEEECCEEC
Confidence 45678999999999999999999875 22 2345677776555
No 318
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.47 E-value=0.021 Score=53.41 Aligned_cols=41 Identities=22% Similarity=0.244 Sum_probs=29.8
Q ss_pred CCcEEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEeccccc
Q 044777 213 RSPVLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADAF 256 (513)
Q Consensus 213 ~~P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDef 256 (513)
....++.+.|+|||||||+.+.|+.. .+ ...+-+.++...+
T Consensus 24 ~~Ge~~~i~G~nGsGKStLl~~l~G~--~~-~~~G~i~~~g~~~ 64 (173)
T cd03230 24 EKGEIYGLLGPNGAGKTTLIKIILGL--LK-PDSGEIKVLGKDI 64 (173)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCC--CC-CCCeEEEECCEEc
Confidence 35568999999999999999999874 22 2245566766444
No 319
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=95.47 E-value=0.012 Score=56.75 Aligned_cols=41 Identities=20% Similarity=0.242 Sum_probs=30.0
Q ss_pred CCcEEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEeccccc
Q 044777 213 RSPVLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADAF 256 (513)
Q Consensus 213 ~~P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDef 256 (513)
....++.+.|+|||||||+.+.|+.. .. ...+-+.++...+
T Consensus 29 ~~G~~~~i~G~nGsGKSTLl~~i~G~--~~-~~~G~i~~~g~~~ 69 (221)
T TIGR02211 29 GKGEIVAIVGSSGSGKSTLLHLLGGL--DN-PTSGEVLFNGQSL 69 (221)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCC--CC-CCCcEEEECCEEh
Confidence 45679999999999999999999875 22 2345566665433
No 320
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=95.47 E-value=0.011 Score=56.35 Aligned_cols=41 Identities=22% Similarity=0.297 Sum_probs=30.0
Q ss_pred CCcEEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEeccccc
Q 044777 213 RSPVLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADAF 256 (513)
Q Consensus 213 ~~P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDef 256 (513)
....++.+.|+|||||||+.+.|+.. .+ ...+-+.++...+
T Consensus 24 ~~G~~~~l~G~nGsGKSTLl~~l~G~--~~-~~~G~i~~~g~~~ 64 (213)
T cd03262 24 KKGEVVVIIGPSGSGKSTLLRCINLL--EE-PDSGTIIIDGLKL 64 (213)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCC--CC-CCCceEEECCEEC
Confidence 45678999999999999999999874 22 2245566765444
No 321
>KOG3062 consensus RNA polymerase II elongator associated protein [General function prediction only]
Probab=95.46 E-value=0.035 Score=56.01 Aligned_cols=81 Identities=26% Similarity=0.179 Sum_probs=45.9
Q ss_pred EEEEecCCCCchHHHHHHHhcCcccccCCCC-eEEecccccccchhhhhhhhccccC-chhhHHHHHhHhHHH-HHHHHH
Q 044777 217 LLFMGGGMGAGKSTVLKDILKEPFWAGAAGN-AVVIEADAFKESDVIYRALSSRSHV-DMLQTAELVHQSSTD-AASSLL 293 (513)
Q Consensus 217 LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~-aVvInaDefR~~~p~y~~l~~~G~~-Dp~qaae~v~~eAtr-lA~~li 293 (513)
|++++|.|-|||||.++.|... +.+.+.. .|.|-.|+=. +.- -++ .+ |. + .+ .+.+ .....+
T Consensus 3 LVvi~G~P~SGKstrA~~L~~~--l~~~~~K~~v~ii~desl---g~~--~ns--~y~~s-~-~E----K~lRg~L~S~v 67 (281)
T KOG3062|consen 3 LVVICGLPCSGKSTRAVELREA--LKERGTKQSVRIIDDESL---GIE--KNS--NYGDS-Q-AE----KALRGKLRSAV 67 (281)
T ss_pred eEEEeCCCCCCchhHHHHHHHH--HHhhcccceEEEechhhc---CCC--Ccc--ccccc-H-HH----HHHHHHHHHHH
Confidence 6889999999999999999765 2222222 5666555531 100 011 11 11 0 11 1111 223345
Q ss_pred HHHHHCCCcEEEECcCCCh
Q 044777 294 VTALNEGRDVIMDGTLSWV 312 (513)
Q Consensus 294 ~~aL~~GrsVIlDtTlS~~ 312 (513)
+.-+.++.-||+|+-..=+
T Consensus 68 ~R~Lsk~~iVI~DslNyIK 86 (281)
T KOG3062|consen 68 DRSLSKGDIVIVDSLNYIK 86 (281)
T ss_pred HhhcccCcEEEEecccccc
Confidence 6778888889999765443
No 322
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.46 E-value=0.012 Score=55.24 Aligned_cols=41 Identities=22% Similarity=0.349 Sum_probs=29.8
Q ss_pred CCcEEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEeccccc
Q 044777 213 RSPVLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADAF 256 (513)
Q Consensus 213 ~~P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDef 256 (513)
.+..++.+.|+|||||||+.+.|+.. .+ ...+-+.++...+
T Consensus 24 ~~G~~~~i~G~nGsGKSTLl~~l~G~--~~-~~~G~i~~~g~~~ 64 (178)
T cd03229 24 EAGEIVALLGPSGSGKSTLLRCIAGL--EE-PDSGSILIDGEDL 64 (178)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCC--CC-CCceEEEECCEEc
Confidence 45678999999999999999999864 21 2245566766444
No 323
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.46 E-value=0.011 Score=57.77 Aligned_cols=50 Identities=22% Similarity=0.249 Sum_probs=33.3
Q ss_pred hcccccCCCCCcEEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEeccccc
Q 044777 204 VMAPVALGDRSPVLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADAF 256 (513)
Q Consensus 204 vl~p~~~~~~~P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDef 256 (513)
++.++--.-....++.+.|+|||||||+.+.|+.. .. ...+-+.++...+
T Consensus 17 il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl--~~-~~~G~i~~~g~~~ 66 (239)
T cd03296 17 ALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGL--ER-PDSGTILFGGEDA 66 (239)
T ss_pred eeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCC--CC-CCceEEEECCEEC
Confidence 33333333456779999999999999999999875 21 2235566665433
No 324
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=95.46 E-value=0.021 Score=53.40 Aligned_cols=41 Identities=24% Similarity=0.259 Sum_probs=30.1
Q ss_pred CCcEEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEeccccc
Q 044777 213 RSPVLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADAF 256 (513)
Q Consensus 213 ~~P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDef 256 (513)
....++.+.|+|||||||+.+.|+.. .+ ...+.+.++...+
T Consensus 26 ~~Ge~~~i~G~nGsGKStLl~~l~G~--~~-~~~G~i~~~g~~~ 66 (173)
T cd03246 26 EPGESLAIIGPSGSGKSTLARLILGL--LR-PTSGRVRLDGADI 66 (173)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhc--cC-CCCCeEEECCEEc
Confidence 35668999999999999999999874 11 2345567766444
No 325
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.46 E-value=0.05 Score=61.55 Aligned_cols=48 Identities=23% Similarity=0.285 Sum_probs=38.0
Q ss_pred hcccccCC-------CCCcEEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEeccccc
Q 044777 204 VMAPVALG-------DRSPVLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADAF 256 (513)
Q Consensus 204 vl~p~~~~-------~~~P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDef 256 (513)
|+-|+.+| -..|.=|++.||||+||||+++.++.+ .+.|++-|.+-++
T Consensus 450 V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne-----~~~nFlsvkgpEL 504 (693)
T KOG0730|consen 450 VEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANE-----AGMNFLSVKGPEL 504 (693)
T ss_pred HhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhh-----hcCCeeeccCHHH
Confidence 34566665 367899999999999999999999987 4577777766665
No 326
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.45 E-value=0.019 Score=55.65 Aligned_cols=41 Identities=20% Similarity=0.304 Sum_probs=30.3
Q ss_pred CCcEEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEeccccc
Q 044777 213 RSPVLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADAF 256 (513)
Q Consensus 213 ~~P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDef 256 (513)
....++.+.|+|||||||+.+.|+.. .+ ...+-+.++...+
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl--~~-p~~G~i~~~g~~~ 66 (234)
T cd03251 26 PAGETVALVGPSGSGKSTLVNLIPRF--YD-VDSGRILIDGHDV 66 (234)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcc--cc-CCCCEEEECCEEh
Confidence 45679999999999999999999764 11 2245567766544
No 327
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=95.44 E-value=0.032 Score=62.87 Aligned_cols=39 Identities=23% Similarity=0.430 Sum_probs=33.0
Q ss_pred CCcEEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEeccccc
Q 044777 213 RSPVLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADAF 256 (513)
Q Consensus 213 ~~P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDef 256 (513)
..|.=|+|+||||+|||-+|++++.+ .+.|++.|-+-++
T Consensus 543 ~~PsGvLL~GPPGCGKTLlAKAVANE-----ag~NFisVKGPEL 581 (802)
T KOG0733|consen 543 DAPSGVLLCGPPGCGKTLLAKAVANE-----AGANFISVKGPEL 581 (802)
T ss_pred CCCCceEEeCCCCccHHHHHHHHhhh-----ccCceEeecCHHH
Confidence 35888999999999999999999987 4678877766666
No 328
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=95.44 E-value=0.02 Score=55.07 Aligned_cols=40 Identities=25% Similarity=0.298 Sum_probs=30.1
Q ss_pred CcEEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEeccccc
Q 044777 214 SPVLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADAF 256 (513)
Q Consensus 214 ~P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDef 256 (513)
...++.+.|+|||||||+.+.++.. .+ ...+-+.++...+
T Consensus 23 ~Ge~~~i~G~nGsGKSTLl~~l~G~--~~-~~~G~i~~~g~~~ 62 (213)
T TIGR01277 23 DGEIVAIMGPSGAGKSTLLNLIAGF--IE-PASGSIKVNDQSH 62 (213)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcC--CC-CCCcEEEECCEEc
Confidence 5679999999999999999999875 22 2345567766444
No 329
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.43 E-value=0.02 Score=55.72 Aligned_cols=41 Identities=20% Similarity=0.402 Sum_probs=31.0
Q ss_pred CCcEEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEeccccc
Q 044777 213 RSPVLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADAF 256 (513)
Q Consensus 213 ~~P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDef 256 (513)
.+..++.+.|+|||||||+.+.|+.. ++ ...+.+.++...+
T Consensus 25 ~~Ge~~~l~G~nGsGKSTLl~~i~Gl--~~-~~~G~v~~~g~~~ 65 (236)
T cd03253 25 PAGKKVAIVGPSGSGKSTILRLLFRF--YD-VSSGSILIDGQDI 65 (236)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcc--cC-CCCCEEEECCEEh
Confidence 45679999999999999999999875 32 2345677776544
No 330
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.43 E-value=0.012 Score=57.41 Aligned_cols=41 Identities=29% Similarity=0.416 Sum_probs=29.9
Q ss_pred CCcEEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEeccccc
Q 044777 213 RSPVLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADAF 256 (513)
Q Consensus 213 ~~P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDef 256 (513)
....++.+.|+|||||||+.+.|+.. .. ...+-+.++...+
T Consensus 24 ~~Ge~~~l~G~nGsGKSTLl~~l~G~--~~-p~~G~i~~~g~~~ 64 (235)
T cd03261 24 RRGEILAIIGPSGSGKSTLLRLIVGL--LR-PDSGEVLIDGEDI 64 (235)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCC--CC-CCceEEEECCEEc
Confidence 45678999999999999999999864 21 2235566766443
No 331
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=95.43 E-value=0.012 Score=56.10 Aligned_cols=41 Identities=22% Similarity=0.315 Sum_probs=30.3
Q ss_pred CCcEEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEeccccc
Q 044777 213 RSPVLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADAF 256 (513)
Q Consensus 213 ~~P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDef 256 (513)
.+..++.+.|+|||||||+.+.++.. .+ ...+-+.++...+
T Consensus 24 ~~G~~~~i~G~nGsGKSTLl~~l~Gl--~~-~~~G~i~~~g~~~ 64 (208)
T cd03268 24 KKGEIYGFLGPNGAGKTTTMKIILGL--IK-PDSGEITFDGKSY 64 (208)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCC--cC-CCceEEEECCCcc
Confidence 45679999999999999999999864 21 2245567766544
No 332
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=95.42 E-value=0.015 Score=56.22 Aligned_cols=41 Identities=17% Similarity=0.263 Sum_probs=32.5
Q ss_pred CCcEEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEecccc
Q 044777 213 RSPVLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADA 255 (513)
Q Consensus 213 ~~P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDe 255 (513)
....++++.|+||+||||++.+++.+ ....+.++++|+.+.
T Consensus 21 ~~g~i~~i~G~~GsGKT~l~~~la~~--~~~~~~~v~yi~~e~ 61 (225)
T PRK09361 21 ERGTITQIYGPPGSGKTNICLQLAVE--AAKNGKKVIYIDTEG 61 (225)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH--HHHCCCeEEEEECCC
Confidence 45689999999999999999999864 112356788998883
No 333
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=95.42 E-value=0.01 Score=54.05 Aligned_cols=22 Identities=50% Similarity=0.836 Sum_probs=19.8
Q ss_pred EEEEecCCCCchHHHHHHHhcC
Q 044777 217 LLFMGGGMGAGKSTVLKDILKE 238 (513)
Q Consensus 217 LILmaG~pGAGKSTla~~Ll~~ 238 (513)
++++.||+||||||+++.|.+.
T Consensus 1 ~i~i~GpsGsGKstl~~~L~~~ 22 (137)
T cd00071 1 LIVLSGPSGVGKSTLLKRLLEE 22 (137)
T ss_pred CEEEECCCCCCHHHHHHHHHhc
Confidence 4688999999999999999875
No 334
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=95.41 E-value=0.021 Score=56.22 Aligned_cols=41 Identities=22% Similarity=0.407 Sum_probs=30.9
Q ss_pred CCcEEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEeccccc
Q 044777 213 RSPVLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADAF 256 (513)
Q Consensus 213 ~~P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDef 256 (513)
....++.+.|+|||||||+.+.|+.. .+ ...+.+.++...+
T Consensus 29 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl--~~-~~~G~i~~~g~~~ 69 (255)
T PRK11300 29 REQEIVSLIGPNGAGKTTVFNCLTGF--YK-PTGGTILLRGQHI 69 (255)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHhCC--cC-CCcceEEECCEEC
Confidence 46779999999999999999999875 22 2345567766544
No 335
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=95.41 E-value=0.022 Score=53.63 Aligned_cols=41 Identities=12% Similarity=0.318 Sum_probs=30.2
Q ss_pred CCcEEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEeccccc
Q 044777 213 RSPVLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADAF 256 (513)
Q Consensus 213 ~~P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDef 256 (513)
....++.+.|+|||||||+.+.++.. .+ ...+-+.++...+
T Consensus 24 ~~G~~~~i~G~nGsGKSTLl~~l~G~--~~-~~~G~i~~~g~~~ 64 (182)
T cd03215 24 RAGEIVGIAGLVGNGQTELAEALFGL--RP-PASGEITLDGKPV 64 (182)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCC--CC-CCCceEEECCEEC
Confidence 35668999999999999999999875 21 2345567776444
No 336
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=95.41 E-value=0.011 Score=55.15 Aligned_cols=36 Identities=22% Similarity=0.367 Sum_probs=27.4
Q ss_pred EEEEecCCCCchHHHHHHHhcCcccccCCCCeEEeccc
Q 044777 217 LLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEAD 254 (513)
Q Consensus 217 LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaD 254 (513)
++.++|++||||||++..+... +...+..+.+|..|
T Consensus 1 vi~i~G~~gsGKTtl~~~l~~~--l~~~G~~V~viK~~ 36 (155)
T TIGR00176 1 VLQIVGPKNSGKTTLIERLVKA--LKARGYRVATIKHD 36 (155)
T ss_pred CEEEECCCCCCHHHHHHHHHHH--HHhcCCeEEEEecc
Confidence 3678999999999999999886 44444466666655
No 337
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.41 E-value=0.021 Score=55.24 Aligned_cols=41 Identities=17% Similarity=0.343 Sum_probs=30.6
Q ss_pred CCcEEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEeccccc
Q 044777 213 RSPVLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADAF 256 (513)
Q Consensus 213 ~~P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDef 256 (513)
....++.+.|+|||||||+.+.|+.. .+ ...+.+.++...+
T Consensus 27 ~~G~~~~i~G~nGsGKSTLl~~l~G~--~~-~~~G~i~~~g~~~ 67 (229)
T cd03254 27 KPGETVAIVGPTGAGKTTLINLLMRF--YD-PQKGQILIDGIDI 67 (229)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcC--cC-CCCCEEEECCEeH
Confidence 45668999999999999999999875 22 2345677776544
No 338
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=95.40 E-value=0.022 Score=55.78 Aligned_cols=41 Identities=20% Similarity=0.276 Sum_probs=30.3
Q ss_pred CCcEEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEeccccc
Q 044777 213 RSPVLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADAF 256 (513)
Q Consensus 213 ~~P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDef 256 (513)
....++.+.|+|||||||+.+.|+.. .+ ...+-+.++...+
T Consensus 27 ~~Ge~~~l~G~nGsGKSTLl~~l~G~--~~-~~~G~i~~~g~~~ 67 (241)
T PRK10895 27 NSGEIVGLLGPNGAGKTTTFYMVVGI--VP-RDAGNIIIDDEDI 67 (241)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCC--CC-CCCcEEEECCEEC
Confidence 45679999999999999999999875 22 2245566766444
No 339
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.40 E-value=0.02 Score=63.13 Aligned_cols=52 Identities=19% Similarity=0.286 Sum_probs=42.6
Q ss_pred HHhHHHHhhhhhhHHHHHHHHHHHHHHHhcCCCCCCcccchhcccccCCCCCcEEEEEecCCCCchHHHHHHHhcC
Q 044777 163 TREQRFERVTKNLKVARVFTTLVEEMKAMGLAPNDDSQCTEVMAPVALGDRSPVLLFMGGGMGAGKSTVLKDILKE 238 (513)
Q Consensus 163 ~r~~rf~r~~~~~~v~r~~~~~ve~~~~~~~~~~~~~~~~~vl~p~~~~~~~P~LILmaG~pGAGKSTla~~Ll~~ 238 (513)
-|=+.|+.++....+.+.|+..++ ..+-|..+|+.|++|.||||+++.+++.
T Consensus 7 yRP~~f~dliGQe~vv~~L~~a~~------------------------~~ri~ha~Lf~Gp~G~GKTT~ArilAk~ 58 (491)
T PRK14964 7 YRPSSFKDLVGQDVLVRILRNAFT------------------------LNKIPQSILLVGASGVGKTTCARIISLC 58 (491)
T ss_pred hCCCCHHHhcCcHHHHHHHHHHHH------------------------cCCCCceEEEECCCCccHHHHHHHHHHH
Confidence 344689999999999988887772 2345779999999999999999999863
No 340
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=95.39 E-value=0.019 Score=57.25 Aligned_cols=41 Identities=22% Similarity=0.309 Sum_probs=30.4
Q ss_pred CCcEEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEeccccc
Q 044777 213 RSPVLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADAF 256 (513)
Q Consensus 213 ~~P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDef 256 (513)
....++.+.|+|||||||+++.|+.. .+ ...+-+.++...+
T Consensus 35 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl--~~-~~~G~i~~~g~~~ 75 (265)
T PRK10575 35 PAGKVTGLIGHNGSGKSTLLKMLGRH--QP-PSEGEILLDAQPL 75 (265)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHcCC--CC-CCCCEEEECCEeh
Confidence 45679999999999999999999864 22 2345567766544
No 341
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=95.36 E-value=0.021 Score=56.33 Aligned_cols=41 Identities=20% Similarity=0.286 Sum_probs=30.1
Q ss_pred CCcEEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEeccccc
Q 044777 213 RSPVLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADAF 256 (513)
Q Consensus 213 ~~P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDef 256 (513)
....++.+.|+|||||||+.+.|+.. .. ...+-+.++...+
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~l~G~--~~-~~~G~i~~~g~~i 64 (252)
T TIGR03005 24 AAGEKVALIGPSGSGKSTILRILMTL--EP-IDEGQIQVEGEQL 64 (252)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCC--CC-CCceEEEECCEEc
Confidence 45678999999999999999999874 21 2245566666444
No 342
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=95.36 E-value=0.012 Score=57.47 Aligned_cols=22 Identities=32% Similarity=0.484 Sum_probs=20.0
Q ss_pred cEEEEEecCCCCchHHHHHHHh
Q 044777 215 PVLLFMGGGMGAGKSTVLKDIL 236 (513)
Q Consensus 215 P~LILmaG~pGAGKSTla~~Ll 236 (513)
+.++.+.|||||||||+.+.+.
T Consensus 25 ~~i~~ivGpNGaGKSTll~~i~ 46 (212)
T cd03274 25 KSFSAIVGPNGSGKSNVIDSML 46 (212)
T ss_pred CCeEEEECCCCCCHHHHHHHHH
Confidence 3689999999999999999986
No 343
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=95.35 E-value=0.013 Score=55.60 Aligned_cols=41 Identities=17% Similarity=0.303 Sum_probs=29.9
Q ss_pred CCcEEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEeccccc
Q 044777 213 RSPVLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADAF 256 (513)
Q Consensus 213 ~~P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDef 256 (513)
....++.+.|+|||||||+.+.++.. .+ ...+-+.++.-.+
T Consensus 24 ~~Ge~~~l~G~nGsGKSTLl~~l~G~--~~-~~~G~i~~~g~~i 64 (195)
T PRK13541 24 LPSAITYIKGANGCGKSSLLRMIAGI--MQ-PSSGNIYYKNCNI 64 (195)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhcC--CC-CCCcEEEECCccc
Confidence 35669999999999999999999875 22 2245567765443
No 344
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=95.35 E-value=0.17 Score=52.96 Aligned_cols=86 Identities=20% Similarity=0.272 Sum_probs=49.3
Q ss_pred cEEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEe-cccccccchhhhhhhhccccCchhhHHHHHhHhHHHHHHHHH
Q 044777 215 PVLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVI-EADAFKESDVIYRALSSRSHVDMLQTAELVHQSSTDAASSLL 293 (513)
Q Consensus 215 P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvI-naDefR~~~p~y~~l~~~G~~Dp~qaae~v~~eAtrlA~~li 293 (513)
...++++|++||||||+.+.|+............+.| ++.++.-.++.+-.+.. . ...-+..++
T Consensus 148 ~~~ilI~G~tGSGKTTll~aL~~~~~~~~~~~rivtIEd~~El~~~~~~~v~~~~----~-----------~~~~~~~ll 212 (319)
T PRK13894 148 HRNILVIGGTGSGKTTLVNAIINEMVIQDPTERVFIIEDTGEIQCAAENYVQYHT----S-----------IDVNMTALL 212 (319)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhhhhcCCCceEEEEcCCCccccCCCCEEEEec----C-----------CCCCHHHHH
Confidence 4578899999999999999998741000011233333 33344211111000000 0 001134577
Q ss_pred HHHHHCCCcEEEECcCCChHHH
Q 044777 294 VTALNEGRDVIMDGTLSWVPFV 315 (513)
Q Consensus 294 ~~aL~~GrsVIlDtTlS~~~~~ 315 (513)
..+|..+-+.|+=+=.++++-.
T Consensus 213 ~~aLR~~PD~IivGEiR~~Ea~ 234 (319)
T PRK13894 213 KTTLRMRPDRILVGEVRGPEAL 234 (319)
T ss_pred HHHhcCCCCEEEEeccCCHHHH
Confidence 8899999999999999887643
No 345
>PRK10908 cell division protein FtsE; Provisional
Probab=95.34 E-value=0.022 Score=55.02 Aligned_cols=41 Identities=29% Similarity=0.353 Sum_probs=30.3
Q ss_pred CCcEEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEeccccc
Q 044777 213 RSPVLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADAF 256 (513)
Q Consensus 213 ~~P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDef 256 (513)
....++.+.|+|||||||+.+.|+.. .+ ...+-+.++...+
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~G~--~~-~~~G~i~~~g~~i 66 (222)
T PRK10908 26 RPGEMAFLTGHSGAGKSTLLKLICGI--ER-PSAGKIWFSGHDI 66 (222)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCC--CC-CCceEEEECCEEc
Confidence 46679999999999999999999864 22 2345566766444
No 346
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.34 E-value=0.023 Score=54.35 Aligned_cols=40 Identities=25% Similarity=0.214 Sum_probs=29.7
Q ss_pred CcEEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEeccccc
Q 044777 214 SPVLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADAF 256 (513)
Q Consensus 214 ~P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDef 256 (513)
...++.+.|+|||||||+.+.|+.. ++ ...+-+.++...+
T Consensus 23 ~Ge~~~l~G~nGsGKSTLl~~l~gl--~~-~~~G~i~~~g~~~ 62 (211)
T cd03298 23 QGEITAIVGPSGSGKSTLLNLIAGF--ET-PQSGRVLINGVDV 62 (211)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC--CC-CCCceEEECCEEc
Confidence 4568999999999999999999875 22 2245567766544
No 347
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=95.34 E-value=0.015 Score=56.44 Aligned_cols=42 Identities=10% Similarity=0.090 Sum_probs=31.8
Q ss_pred CcEEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEeccccc
Q 044777 214 SPVLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADAF 256 (513)
Q Consensus 214 ~P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDef 256 (513)
+..+++++|+||+||||++.+++... ....+.++.+++.+.=
T Consensus 12 ~G~l~lI~G~~G~GKT~~~~~~~~~~-~~~~g~~vly~s~E~~ 53 (242)
T cd00984 12 PGDLIIIAARPSMGKTAFALNIAENI-AKKQGKPVLFFSLEMS 53 (242)
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHH-HHhCCCceEEEeCCCC
Confidence 45799999999999999999987651 2222567788876653
No 348
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=95.33 E-value=0.023 Score=55.40 Aligned_cols=40 Identities=25% Similarity=0.253 Sum_probs=29.9
Q ss_pred CcEEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEeccccc
Q 044777 214 SPVLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADAF 256 (513)
Q Consensus 214 ~P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDef 256 (513)
...++.+.|+|||||||+.+.|+.. .. ...+-+.++...+
T Consensus 24 ~Ge~~~l~G~nGsGKSTLl~~l~Gl--~~-~~~G~i~~~g~~~ 63 (232)
T PRK10771 24 RGERVAILGPSGAGKSTLLNLIAGF--LT-PASGSLTLNGQDH 63 (232)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC--CC-CCCceEEECCeec
Confidence 5668999999999999999999875 22 2245567766544
No 349
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=95.33 E-value=0.015 Score=58.53 Aligned_cols=41 Identities=12% Similarity=0.199 Sum_probs=31.6
Q ss_pred CCcEEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEecccc
Q 044777 213 RSPVLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADA 255 (513)
Q Consensus 213 ~~P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDe 255 (513)
....+++++|+||+||||++-+++.+ ....+..+++|+.++
T Consensus 34 p~gs~~lI~G~pGtGKT~l~~qf~~~--~a~~Ge~vlyis~Ee 74 (259)
T TIGR03878 34 PAYSVINITGVSDTGKSLMVEQFAVT--QASRGNPVLFVTVES 74 (259)
T ss_pred ECCcEEEEEcCCCCCHHHHHHHHHHH--HHhCCCcEEEEEecC
Confidence 46789999999999999999998765 222356778887653
No 350
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=95.33 E-value=0.02 Score=51.03 Aligned_cols=34 Identities=18% Similarity=0.304 Sum_probs=27.2
Q ss_pred cEEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEecccccc
Q 044777 215 PVLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADAFK 257 (513)
Q Consensus 215 P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDefR 257 (513)
-.++.+.|++||||||+++.+. . +.+.++.|++.
T Consensus 15 ge~v~I~GpSGsGKSTLl~~l~-~--------G~i~~~g~di~ 48 (107)
T cd00820 15 KVGVLITGDSGIGKTELALELI-K--------RKHRLVGDDNV 48 (107)
T ss_pred CEEEEEEcCCCCCHHHHHHHhh-C--------CeEEEeeEeHH
Confidence 4789999999999999999987 3 23567777773
No 351
>cd01918 HprK_C HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of Ser-46 of HPr and its dephosphorylation by phosphorolysis. The latter reaction uses inorganic phosphate as substrate and produces pyrophosphate. Phosphoenolpyruvate carboxykinase (PEPCK) and the C-terminal catalytic domain of HprK/P are structurally similar with conserved active site residues suggesting these two phosphotransferases have related functions. The HprK/P N-terminal domain is structurally similar to the N-terminal domains of the MurE and MurF amino acid ligases.
Probab=95.33 E-value=0.016 Score=54.45 Aligned_cols=24 Identities=25% Similarity=0.473 Sum_probs=21.6
Q ss_pred cEEEEEecCCCCchHHHHHHHhcC
Q 044777 215 PVLLFMGGGMGAGKSTVLKDILKE 238 (513)
Q Consensus 215 P~LILmaG~pGAGKSTla~~Ll~~ 238 (513)
..-++|.|++||||||++..|...
T Consensus 14 g~gvLi~G~sG~GKStlal~L~~~ 37 (149)
T cd01918 14 GIGVLITGPSGIGKSELALELIKR 37 (149)
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHc
Confidence 467899999999999999999886
No 352
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=95.33 E-value=0.014 Score=55.56 Aligned_cols=40 Identities=23% Similarity=0.170 Sum_probs=29.0
Q ss_pred CCcEEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEecccc
Q 044777 213 RSPVLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADA 255 (513)
Q Consensus 213 ~~P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDe 255 (513)
....++.+.|+|||||||+.+.++.. .. ...+-+.++.-.
T Consensus 22 ~~Ge~~~i~G~nGsGKSTLl~~l~G~--~~-~~~G~i~~~g~~ 61 (206)
T TIGR03608 22 EKGKMYAIIGESGSGKSTLLNIIGLL--EK-FDSGQVYLNGKE 61 (206)
T ss_pred eCCcEEEEECCCCCCHHHHHHHHhcC--CC-CCCeEEEECCEE
Confidence 35568999999999999999999874 21 223456666544
No 353
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=95.32 E-value=0.016 Score=58.79 Aligned_cols=28 Identities=29% Similarity=0.215 Sum_probs=22.8
Q ss_pred cEEEEEecCCCCchHHHHHHHhcCccccc
Q 044777 215 PVLLFMGGGMGAGKSTVLKDILKEPFWAG 243 (513)
Q Consensus 215 P~LILmaG~pGAGKSTla~~Ll~~~f~~~ 243 (513)
..=|.|.|+|||||||+.+.+... .|+.
T Consensus 57 ge~W~I~G~NGsGKTTLL~ll~~~-~~ps 84 (257)
T COG1119 57 GEHWAIVGPNGAGKTTLLSLLTGE-HPPS 84 (257)
T ss_pred CCcEEEECCCCCCHHHHHHHHhcc-cCCC
Confidence 345789999999999999999887 3543
No 354
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=95.31 E-value=0.014 Score=56.51 Aligned_cols=42 Identities=19% Similarity=0.249 Sum_probs=30.8
Q ss_pred CCcEEEEEecCCCCchHHHHHHHhcCcccc----cCCCCeEEeccccc
Q 044777 213 RSPVLLFMGGGMGAGKSTVLKDILKEPFWA----GAAGNAVVIEADAF 256 (513)
Q Consensus 213 ~~P~LILmaG~pGAGKSTla~~Ll~~~f~~----~~~~~aVvInaDef 256 (513)
....++.+.|+|||||||+.+.|+.. .. ....+-+.++...+
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~i~G~--~~~~~~~~~~G~i~~~g~~~ 69 (227)
T cd03260 24 PKGEITALIGPSGCGKSTLLRLLNRL--NDLIPGAPDEGEVLLDGKDI 69 (227)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhh--cccccCCCCCeEEEECCEEh
Confidence 45679999999999999999999864 20 12345577776554
No 355
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=95.31 E-value=0.014 Score=56.97 Aligned_cols=41 Identities=20% Similarity=0.257 Sum_probs=30.3
Q ss_pred CCcEEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEeccccc
Q 044777 213 RSPVLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADAF 256 (513)
Q Consensus 213 ~~P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDef 256 (513)
....++.+.|+|||||||+.+.|+.. .+ ...+-+.++...+
T Consensus 33 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl--~~-~~~G~i~~~g~~i 73 (233)
T PRK11629 33 GEGEMMAIVGSSGSGKSTLLHLLGGL--DT-PTSGDVIFNGQPM 73 (233)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhcC--CC-CCceEEEECCEEc
Confidence 45678999999999999999999874 22 2345567766444
No 356
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=95.30 E-value=0.013 Score=57.03 Aligned_cols=41 Identities=20% Similarity=0.287 Sum_probs=29.7
Q ss_pred CcEEEEEecCCCCchHHHHHHHhcCcccccC---CCCeEEeccccc
Q 044777 214 SPVLLFMGGGMGAGKSTVLKDILKEPFWAGA---AGNAVVIEADAF 256 (513)
Q Consensus 214 ~P~LILmaG~pGAGKSTla~~Ll~~~f~~~~---~~~aVvInaDef 256 (513)
...++.+.|+|||||||+.+.|+.. .... ..+-+.++...+
T Consensus 11 ~Ge~~~i~G~nGsGKSTLl~~l~Gl--~~p~~~~~~G~i~~~g~~~ 54 (230)
T TIGR02770 11 RGEVLALVGESGSGKSLTCLAILGL--LPPGLTQTSGEILLDGRPL 54 (230)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC--CCCccCccccEEEECCEec
Confidence 5668999999999999999999875 2210 245566766444
No 357
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.30 E-value=0.014 Score=56.01 Aligned_cols=38 Identities=29% Similarity=0.337 Sum_probs=27.9
Q ss_pred CCcEEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEeccc
Q 044777 213 RSPVLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEAD 254 (513)
Q Consensus 213 ~~P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaD 254 (513)
.. .++.+.|+|||||||+.+.++.. .. ...+-+.++.-
T Consensus 22 ~~-e~~~i~G~nGsGKSTLl~~l~G~--~~-~~~G~i~~~g~ 59 (214)
T cd03297 22 NE-EVTGIFGASGAGKSTLLRCIAGL--EK-PDGGTIVLNGT 59 (214)
T ss_pred cc-eeEEEECCCCCCHHHHHHHHhCC--CC-CCCceEEECCE
Confidence 35 89999999999999999999865 22 12344566543
No 358
>cd02034 CooC The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH). CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function.
Probab=95.28 E-value=0.016 Score=51.77 Aligned_cols=36 Identities=25% Similarity=0.359 Sum_probs=29.1
Q ss_pred EEEecCCCCchHHHHHHHhcCcccccCCCCeEEecccc
Q 044777 218 LFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADA 255 (513)
Q Consensus 218 ILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDe 255 (513)
+++.|.+|+||||++..++.. +...+..+.+|++|.
T Consensus 2 i~~~GkgG~GKTt~a~~la~~--l~~~g~~V~~id~D~ 37 (116)
T cd02034 2 IAITGKGGVGKTTIAALLARY--LAEKGKPVLAIDADP 37 (116)
T ss_pred EEEECCCCCCHHHHHHHHHHH--HHHCCCcEEEEECCc
Confidence 688999999999999988775 444456677888886
No 359
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=95.28 E-value=0.014 Score=56.73 Aligned_cols=41 Identities=24% Similarity=0.399 Sum_probs=30.2
Q ss_pred CCcEEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEeccccc
Q 044777 213 RSPVLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADAF 256 (513)
Q Consensus 213 ~~P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDef 256 (513)
....++.+.|+|||||||+.+.|+.. .+ ...+-+.++...+
T Consensus 31 ~~Ge~~~i~G~nGsGKSTLl~~l~G~--~~-~~~G~i~~~g~~~ 71 (225)
T PRK10247 31 RAGEFKLITGPSGCGKSTLLKIVASL--IS-PTSGTLLFEGEDI 71 (225)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcc--cC-CCCCeEEECCEEc
Confidence 45679999999999999999999864 11 2345566766544
No 360
>PRK06893 DNA replication initiation factor; Validated
Probab=95.28 E-value=0.15 Score=50.23 Aligned_cols=37 Identities=24% Similarity=0.432 Sum_probs=27.8
Q ss_pred EEEEecCCCCchHHHHHHHhcCcccccCCCCeEEecccc
Q 044777 217 LLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADA 255 (513)
Q Consensus 217 LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDe 255 (513)
.+++.|+||+|||+++..+..+ ....+.++++++...
T Consensus 41 ~l~l~G~~G~GKThL~~ai~~~--~~~~~~~~~y~~~~~ 77 (229)
T PRK06893 41 FFYIWGGKSSGKSHLLKAVSNH--YLLNQRTAIYIPLSK 77 (229)
T ss_pred eEEEECCCCCCHHHHHHHHHHH--HHHcCCCeEEeeHHH
Confidence 5788999999999999999875 212245677777653
No 361
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=95.27 E-value=0.015 Score=56.34 Aligned_cols=41 Identities=20% Similarity=0.347 Sum_probs=31.5
Q ss_pred cEEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEecccccc
Q 044777 215 PVLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADAFK 257 (513)
Q Consensus 215 P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDefR 257 (513)
+..+++.|++|+||||++..+... ....+..++++++..+.
T Consensus 42 ~~~~~l~G~~G~GKT~La~ai~~~--~~~~~~~~~~i~~~~~~ 82 (227)
T PRK08903 42 DRFFYLWGEAGSGRSHLLQALVAD--ASYGGRNARYLDAASPL 82 (227)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH--HHhCCCcEEEEehHHhH
Confidence 346789999999999999999875 22234577888887764
No 362
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=95.27 E-value=0.025 Score=52.59 Aligned_cols=41 Identities=22% Similarity=0.336 Sum_probs=30.2
Q ss_pred CCcEEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEeccccc
Q 044777 213 RSPVLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADAF 256 (513)
Q Consensus 213 ~~P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDef 256 (513)
....++.+.|+|||||||+.+.++.. .+ ...+-+.++...+
T Consensus 24 ~~Ge~~~l~G~nGsGKSTLl~~i~G~--~~-~~~G~v~~~g~~~ 64 (163)
T cd03216 24 RRGEVHALLGENGAGKSTLMKILSGL--YK-PDSGEILVDGKEV 64 (163)
T ss_pred eCCCEEEEECCCCCCHHHHHHHHhCC--CC-CCCeEEEECCEEC
Confidence 45668999999999999999999865 22 2345567766544
No 363
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=95.24 E-value=0.021 Score=55.62 Aligned_cols=41 Identities=22% Similarity=0.349 Sum_probs=30.6
Q ss_pred CCcEEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEeccccc
Q 044777 213 RSPVLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADAF 256 (513)
Q Consensus 213 ~~P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDef 256 (513)
....++.+.|+|||||||+.+.|+.. +. ...+-+.++...+
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl--~~-~~~G~i~~~g~~~ 66 (237)
T cd03252 26 KPGEVVGIVGRSGSGKSTLTKLIQRF--YV-PENGRVLVDGHDL 66 (237)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcC--cC-CCCCEEEECCeeh
Confidence 46779999999999999999999875 22 2245567766444
No 364
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=95.24 E-value=0.014 Score=56.51 Aligned_cols=22 Identities=32% Similarity=0.323 Sum_probs=20.3
Q ss_pred EEEEEecCCCCchHHHHHHHhc
Q 044777 216 VLLFMGGGMGAGKSTVLKDILK 237 (513)
Q Consensus 216 ~LILmaG~pGAGKSTla~~Ll~ 237 (513)
.++++.|||||||||+.+.+..
T Consensus 26 ~~~~ltGpNg~GKSTllr~i~~ 47 (199)
T cd03283 26 NGILITGSNMSGKSTFLRTIGV 47 (199)
T ss_pred cEEEEECCCCCChHHHHHHHHH
Confidence 7999999999999999998864
No 365
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=95.24 E-value=0.014 Score=57.50 Aligned_cols=26 Identities=27% Similarity=0.309 Sum_probs=22.7
Q ss_pred CCcEEEEEecCCCCchHHHHHHHhcC
Q 044777 213 RSPVLLFMGGGMGAGKSTVLKDILKE 238 (513)
Q Consensus 213 ~~P~LILmaG~pGAGKSTla~~Ll~~ 238 (513)
....++.+.|+|||||||+.+.|+..
T Consensus 30 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl 55 (253)
T PRK14242 30 EQNQVTALIGPSGCGKSTFLRCLNRM 55 (253)
T ss_pred eCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 45679999999999999999999853
No 366
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.24 E-value=0.014 Score=55.82 Aligned_cols=37 Identities=19% Similarity=0.295 Sum_probs=27.4
Q ss_pred EEEEecCCCCchHHHHHHHhcCcccccCCCCeEEeccccc
Q 044777 217 LLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADAF 256 (513)
Q Consensus 217 LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDef 256 (513)
++.+.|+|||||||+.+.++.. .. ...+-+.++...+
T Consensus 27 ~~~i~G~nGsGKSTLl~~l~Gl--~~-~~~G~i~~~g~~~ 63 (211)
T cd03264 27 MYGLLGPNGAGKTTLMRILATL--TP-PSSGTIRIDGQDV 63 (211)
T ss_pred cEEEECCCCCCHHHHHHHHhCC--CC-CCccEEEECCCcc
Confidence 8899999999999999999864 22 2245566766443
No 367
>PF13479 AAA_24: AAA domain
Probab=95.23 E-value=0.02 Score=55.76 Aligned_cols=32 Identities=22% Similarity=0.539 Sum_probs=25.9
Q ss_pred CcEEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEecccc
Q 044777 214 SPVLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADA 255 (513)
Q Consensus 214 ~P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDe 255 (513)
+|.-++|.|+||+||||++..+ + +.++|+.|.
T Consensus 2 ~~~~~lIyG~~G~GKTt~a~~~-~---------k~l~id~E~ 33 (213)
T PF13479_consen 2 KPIKILIYGPPGSGKTTLAASL-P---------KPLFIDTEN 33 (213)
T ss_pred CceEEEEECCCCCCHHHHHHhC-C---------CeEEEEeCC
Confidence 5788999999999999999977 2 445776654
No 368
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=95.23 E-value=0.084 Score=56.36 Aligned_cols=67 Identities=13% Similarity=0.221 Sum_probs=45.3
Q ss_pred CCcEEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEecccccccchhhhhhhhccccCchhhHHHHHhHhHHHHHHHH
Q 044777 213 RSPVLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADAFKESDVIYRALSSRSHVDMLQTAELVHQSSTDAASSL 292 (513)
Q Consensus 213 ~~P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDefR~~~p~y~~l~~~G~~Dp~qaae~v~~eAtrlA~~l 292 (513)
..|+=+++.||||.|||-+|++.+.+ ....++.+.+-++-+.+ --+..++...+
T Consensus 183 ~PPKGVLLYGPPGTGKTLLAkAVA~~-----T~AtFIrvvgSElVqKY---------------------iGEGaRlVRel 236 (406)
T COG1222 183 DPPKGVLLYGPPGTGKTLLAKAVANQ-----TDATFIRVVGSELVQKY---------------------IGEGARLVREL 236 (406)
T ss_pred CCCCceEeeCCCCCcHHHHHHHHHhc-----cCceEEEeccHHHHHHH---------------------hccchHHHHHH
Confidence 46888999999999999999999987 23344555555552211 11234566667
Q ss_pred HHHHHHCCCcEEE
Q 044777 293 LVTALNEGRDVIM 305 (513)
Q Consensus 293 i~~aL~~GrsVIl 305 (513)
++-|-+.-=++||
T Consensus 237 F~lArekaPsIIF 249 (406)
T COG1222 237 FELAREKAPSIIF 249 (406)
T ss_pred HHHHhhcCCeEEE
Confidence 7777666667776
No 369
>COG1855 ATPase (PilT family) [General function prediction only]
Probab=95.23 E-value=0.011 Score=64.38 Aligned_cols=24 Identities=29% Similarity=0.455 Sum_probs=21.4
Q ss_pred CcEEEEEecCCCCchHHHHHHHhc
Q 044777 214 SPVLLFMGGGMGAGKSTVLKDILK 237 (513)
Q Consensus 214 ~P~LILmaG~pGAGKSTla~~Ll~ 237 (513)
+..=||++|+|||||||++.+++.
T Consensus 262 raeGILIAG~PGaGKsTFaqAlAe 285 (604)
T COG1855 262 RAEGILIAGAPGAGKSTFAQALAE 285 (604)
T ss_pred hhcceEEecCCCCChhHHHHHHHH
Confidence 455689999999999999999986
No 370
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=95.22 E-value=0.015 Score=56.77 Aligned_cols=42 Identities=17% Similarity=0.253 Sum_probs=31.0
Q ss_pred CCCcEEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEeccccc
Q 044777 212 DRSPVLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADAF 256 (513)
Q Consensus 212 ~~~P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDef 256 (513)
-....++.+.|+|||||||+.+.++.. .+ ...+-+.++...+
T Consensus 26 i~~Ge~~~l~G~nGsGKSTLl~~i~G~--~~-~~~G~i~~~g~~~ 67 (238)
T cd03249 26 IPPGKTVALVGSSGCGKSTVVSLLERF--YD-PTSGEILLDGVDI 67 (238)
T ss_pred ecCCCEEEEEeCCCCCHHHHHHHHhcc--CC-CCCCEEEECCEeh
Confidence 346789999999999999999999875 22 2245567766443
No 371
>COG4240 Predicted kinase [General function prediction only]
Probab=95.22 E-value=0.043 Score=55.62 Aligned_cols=51 Identities=25% Similarity=0.367 Sum_probs=37.5
Q ss_pred cccccCCCCCcEEEEEecCCCCchHHHHHHHhcCcccccCC-CCeEEecccccc
Q 044777 205 MAPVALGDRSPVLLFMGGGMGAGKSTVLKDILKEPFWAGAA-GNAVVIEADAFK 257 (513)
Q Consensus 205 l~p~~~~~~~P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~-~~aVvInaDefR 257 (513)
+.|...+..+|.++.++||-||||||++..|... ....+ .....++-|+|-
T Consensus 40 iap~~qe~grPli~gisGpQGSGKStls~~i~~~--L~~kg~ert~~lSLDDlY 91 (300)
T COG4240 40 IAPWAQERGRPLIVGISGPQGSGKSTLSALIVRL--LAAKGLERTATLSLDDLY 91 (300)
T ss_pred hhhhhhhcCCceEEEeecCCCCchhhHHHHHHHH--HHHhcccceEEeehhhhh
Confidence 4555566778999999999999999999877543 11112 366778888884
No 372
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=95.21 E-value=0.016 Score=53.50 Aligned_cols=24 Identities=29% Similarity=0.704 Sum_probs=22.1
Q ss_pred cEEEEEecCCCCchHHHHHHHhcC
Q 044777 215 PVLLFMGGGMGAGKSTVLKDILKE 238 (513)
Q Consensus 215 P~LILmaG~pGAGKSTla~~Ll~~ 238 (513)
..++++.|.+||||||+++.+++.
T Consensus 22 ~~~i~l~G~lGaGKTtl~~~l~~~ 45 (133)
T TIGR00150 22 GTVVLLKGDLGAGKTTLVQGLLQG 45 (133)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHH
Confidence 458999999999999999999987
No 373
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=95.21 E-value=0.015 Score=56.65 Aligned_cols=43 Identities=21% Similarity=0.368 Sum_probs=30.4
Q ss_pred CCcEEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEeccccc
Q 044777 213 RSPVLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADAF 256 (513)
Q Consensus 213 ~~P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDef 256 (513)
....++.+.|+|||||||+.+.|+..... ....+.+.++...+
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~-~~~~G~i~~~g~~~ 66 (243)
T TIGR01978 24 KKGEIHAIMGPNGSGKSTLSKTIAGHPSY-EVTSGTILFKGQDL 66 (243)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCC-CCCcceEEECCEec
Confidence 45679999999999999999999874100 12345677766544
No 374
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=95.21 E-value=0.015 Score=57.06 Aligned_cols=42 Identities=17% Similarity=0.166 Sum_probs=29.9
Q ss_pred CCCcEEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEeccccc
Q 044777 212 DRSPVLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADAF 256 (513)
Q Consensus 212 ~~~P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDef 256 (513)
-....++.+.|+|||||||+.+.|+.. .. ...+-+.++...+
T Consensus 26 i~~Ge~~~i~G~nGsGKSTLl~~l~G~--~~-~~~G~i~~~g~~~ 67 (250)
T PRK11264 26 VKPGEVVAIIGPSGSGKTTLLRCINLL--EQ-PEAGTIRVGDITI 67 (250)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcC--CC-CCCeEEEECCEEc
Confidence 346678999999999999999999864 21 2235566655433
No 375
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=95.20 E-value=0.016 Score=55.53 Aligned_cols=23 Identities=43% Similarity=0.436 Sum_probs=21.0
Q ss_pred CcEEEEEecCCCCchHHHHHHHh
Q 044777 214 SPVLLFMGGGMGAGKSTVLKDIL 236 (513)
Q Consensus 214 ~P~LILmaG~pGAGKSTla~~Ll 236 (513)
.+.++++.|+|||||||+.+.++
T Consensus 28 ~~~~~~l~G~Ng~GKStll~~i~ 50 (202)
T cd03243 28 SGRLLLITGPNMGGKSTYLRSIG 50 (202)
T ss_pred CCeEEEEECCCCCccHHHHHHHH
Confidence 45799999999999999999997
No 376
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=95.20 E-value=0.016 Score=49.64 Aligned_cols=21 Identities=19% Similarity=0.498 Sum_probs=19.4
Q ss_pred EEEecCCCCchHHHHHHHhcC
Q 044777 218 LFMGGGMGAGKSTVLKDILKE 238 (513)
Q Consensus 218 ILmaG~pGAGKSTla~~Ll~~ 238 (513)
|+|.|++|+||||+++.+...
T Consensus 2 I~V~G~~g~GKTsLi~~l~~~ 22 (119)
T PF08477_consen 2 IVVLGDSGVGKTSLIRRLCGG 22 (119)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECcCCCCHHHHHHHHhcC
Confidence 688999999999999999876
No 377
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=95.19 E-value=0.017 Score=56.05 Aligned_cols=42 Identities=21% Similarity=0.361 Sum_probs=29.7
Q ss_pred CCcEEEEEecCCCCchHHHHHHHhcCccccc--CCCCeEEeccccc
Q 044777 213 RSPVLLFMGGGMGAGKSTVLKDILKEPFWAG--AAGNAVVIEADAF 256 (513)
Q Consensus 213 ~~P~LILmaG~pGAGKSTla~~Ll~~~f~~~--~~~~aVvInaDef 256 (513)
....++.+.|+|||||||+.+.|... ... ...+-+.++...+
T Consensus 31 ~~Ge~~~l~G~nGsGKSTLlk~l~G~--~~~~~~~~G~i~~~g~~~ 74 (226)
T cd03234 31 ESGQVMAILGSSGSGKTTLLDAISGR--VEGGGTTSGQILFNGQPR 74 (226)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHhCc--cCCCCCCceEEEECCEEC
Confidence 46679999999999999999999865 110 1234566665433
No 378
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.18 E-value=0.028 Score=63.28 Aligned_cols=56 Identities=16% Similarity=0.267 Sum_probs=46.1
Q ss_pred HHHHhHHHHhhhhhhHHHHHHHHHHHHHHHhcCCCCCCcccchhcccccCCCCCcEEEEEecCCCCchHHHHHHHhcCcc
Q 044777 161 QATREQRFERVTKNLKVARVFTTLVEEMKAMGLAPNDDSQCTEVMAPVALGDRSPVLLFMGGGMGAGKSTVLKDILKEPF 240 (513)
Q Consensus 161 ~a~r~~rf~r~~~~~~v~r~~~~~ve~~~~~~~~~~~~~~~~~vl~p~~~~~~~P~LILmaG~pGAGKSTla~~Ll~~~f 240 (513)
+..|=+.|+.++....+.+.|...++ ..+-|..+|+.|++|.||||+++.+++..+
T Consensus 5 ~kyRP~~f~eivGq~~i~~~L~~~i~------------------------~~r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~ 60 (584)
T PRK14952 5 RKYRPATFAEVVGQEHVTEPLSSALD------------------------AGRINHAYLFSGPRGCGKTSSARILARSLN 60 (584)
T ss_pred HHhCCCcHHHhcCcHHHHHHHHHHHH------------------------cCCCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 34455789999999999998888882 234688999999999999999999998643
No 379
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=95.18 E-value=0.019 Score=56.59 Aligned_cols=42 Identities=17% Similarity=0.332 Sum_probs=31.8
Q ss_pred CCcEEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEeccccc
Q 044777 213 RSPVLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADAF 256 (513)
Q Consensus 213 ~~P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDef 256 (513)
.+..++++.|+|||||||++.+++.+.. ..+..+++|..++-
T Consensus 19 ~~gs~~lI~G~pGsGKT~la~~~l~~~~--~~ge~~lyvs~ee~ 60 (237)
T TIGR03877 19 PERNVVLLSGGPGTGKSIFSQQFLWNGL--QMGEPGIYVALEEH 60 (237)
T ss_pred cCCeEEEEEcCCCCCHHHHHHHHHHHHH--HcCCcEEEEEeeCC
Confidence 3578999999999999999998865421 23567788876654
No 380
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=95.18 E-value=0.02 Score=50.23 Aligned_cols=24 Identities=25% Similarity=0.383 Sum_probs=21.2
Q ss_pred cEEEEEecCCCCchHHHHHHHhcC
Q 044777 215 PVLLFMGGGMGAGKSTVLKDILKE 238 (513)
Q Consensus 215 P~LILmaG~pGAGKSTla~~Ll~~ 238 (513)
+..+.+.|++||||||+++.+...
T Consensus 3 ~~~i~~~G~~g~GKttl~~~l~~~ 26 (168)
T cd04163 3 SGFVAIVGRPNVGKSTLLNALVGQ 26 (168)
T ss_pred eeEEEEECCCCCCHHHHHHHHhCC
Confidence 456899999999999999999775
No 381
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=95.18 E-value=0.016 Score=55.60 Aligned_cols=39 Identities=18% Similarity=0.174 Sum_probs=28.4
Q ss_pred CCcEEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEeccc
Q 044777 213 RSPVLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEAD 254 (513)
Q Consensus 213 ~~P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaD 254 (513)
....++.+.|+|||||||+.+.|+.. .+ ...+-+.++.-
T Consensus 29 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl--~~-~~~G~i~~~g~ 67 (218)
T cd03266 29 KPGEVTGLLGPNGAGKTTTLRMLAGL--LE-PDAGFATVDGF 67 (218)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCC--cC-CCCceEEECCE
Confidence 35578999999999999999999874 22 22345666543
No 382
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=95.17 E-value=0.016 Score=56.64 Aligned_cols=41 Identities=22% Similarity=0.274 Sum_probs=30.3
Q ss_pred CCcEEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEeccccc
Q 044777 213 RSPVLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADAF 256 (513)
Q Consensus 213 ~~P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDef 256 (513)
....++.+.|+|||||||+.+.++.. .. ...+-+.++...+
T Consensus 25 ~~Ge~~~l~G~nGsGKSTLl~~l~G~--~~-~~~G~i~~~g~~~ 65 (240)
T PRK09493 25 DQGEVVVIIGPSGSGKSTLLRCINKL--EE-ITSGDLIVDGLKV 65 (240)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCC--CC-CCceEEEECCEEC
Confidence 45679999999999999999999875 22 2245567766444
No 383
>PRK13886 conjugal transfer protein TraL; Provisional
Probab=95.16 E-value=0.088 Score=53.18 Aligned_cols=91 Identities=23% Similarity=0.326 Sum_probs=55.7
Q ss_pred CcEEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEecccccccchhhhhhhhccccCchhhHHHHHhHhHHHHHHHHH
Q 044777 214 SPVLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADAFKESDVIYRALSSRSHVDMLQTAELVHQSSTDAASSLL 293 (513)
Q Consensus 214 ~P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDefR~~~p~y~~l~~~G~~Dp~qaae~v~~eAtrlA~~li 293 (513)
.+..++++|-.|+||||++..++.. +...+..++.|+.|--...+-.|..+.... .+.....+ . ..+....++
T Consensus 2 ~~i~~i~~~KGGvGKSt~a~~la~~--l~~~g~~vl~iD~D~~n~~~~~~~~l~~~~-~~i~~~~~-i---~~r~fD~Lv 74 (241)
T PRK13886 2 AKIHMVLQGKGGVGKSFIAATIAQY--KASKGQKPLCIDTDPVNATFEGYKALNVRR-LNIMDGDE-I---NTRNFDALV 74 (241)
T ss_pred CeEEEEecCCCCCcHHHHHHHHHHH--HHhCCCCEEEEECCCCCchhhhHHhcCCcc-eecccCCc-c---chhhHHHHH
Confidence 3567778899999999999988764 444466788999996643333333332210 01000000 0 112345667
Q ss_pred HHHHHCCCcEEEECcCCC
Q 044777 294 VTALNEGRDVIMDGTLSW 311 (513)
Q Consensus 294 ~~aL~~GrsVIlDtTlS~ 311 (513)
+.+...+.++|+|++=++
T Consensus 75 e~i~~~~~dvIIDngAs~ 92 (241)
T PRK13886 75 EMIASTEGDVIIDNGASS 92 (241)
T ss_pred HHHhccCCCEEEECCCcc
Confidence 777778889999988554
No 384
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=95.16 E-value=0.016 Score=55.73 Aligned_cols=41 Identities=24% Similarity=0.393 Sum_probs=30.1
Q ss_pred CCcEEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEeccccc
Q 044777 213 RSPVLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADAF 256 (513)
Q Consensus 213 ~~P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDef 256 (513)
.+..++.+.|+|||||||+.+.|+.. .. ...+.+.++...+
T Consensus 28 ~~G~~~~i~G~nGsGKSTLl~~i~G~--~~-~~~G~i~~~g~~~ 68 (220)
T cd03245 28 RAGEKVAIIGRVGSGKSTLLKLLAGL--YK-PTSGSVLLDGTDI 68 (220)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcC--cC-CCCCeEEECCEEh
Confidence 46679999999999999999999875 21 2245566665443
No 385
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=95.16 E-value=0.026 Score=57.69 Aligned_cols=41 Identities=17% Similarity=0.195 Sum_probs=29.9
Q ss_pred CCcEEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEeccccc
Q 044777 213 RSPVLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADAF 256 (513)
Q Consensus 213 ~~P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDef 256 (513)
....++.+.|+|||||||+.+.|+.. .. ...+-+.++...+
T Consensus 17 ~~Ge~~~l~G~NGaGKSTLl~~l~Gl--~~-p~~G~i~~~g~~~ 57 (302)
T TIGR01188 17 REGEVFGFLGPNGAGKTTTIRMLTTL--LR-PTSGTARVAGYDV 57 (302)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCC--CC-CCceEEEECCEEc
Confidence 35668999999999999999999864 21 2245567766444
No 386
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=95.16 E-value=0.025 Score=57.07 Aligned_cols=25 Identities=32% Similarity=0.337 Sum_probs=21.7
Q ss_pred CcEEEEEecCCCCchHHHHHHHhcC
Q 044777 214 SPVLLFMGGGMGAGKSTVLKDILKE 238 (513)
Q Consensus 214 ~P~LILmaG~pGAGKSTla~~Ll~~ 238 (513)
.|.-+++.||||+||||+++.++..
T Consensus 29 ~~~~~ll~Gp~G~GKT~la~~ia~~ 53 (305)
T TIGR00635 29 ALDHLLLYGPPGLGKTTLAHIIANE 53 (305)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHH
Confidence 3445788999999999999999886
No 387
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.15 E-value=0.017 Score=53.89 Aligned_cols=41 Identities=24% Similarity=0.408 Sum_probs=30.5
Q ss_pred CCcEEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEeccccc
Q 044777 213 RSPVLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADAF 256 (513)
Q Consensus 213 ~~P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDef 256 (513)
....++.+.|+|||||||+.+.++.. .+ ...+-+.++...+
T Consensus 26 ~~G~~~~l~G~nGsGKstLl~~i~G~--~~-~~~G~i~~~g~~~ 66 (171)
T cd03228 26 KPGEKVAIVGPSGSGKSTLLKLLLRL--YD-PTSGEILIDGVDL 66 (171)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHcC--CC-CCCCEEEECCEEh
Confidence 45679999999999999999999875 22 2345567776544
No 388
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=95.15 E-value=0.026 Score=56.59 Aligned_cols=41 Identities=20% Similarity=0.197 Sum_probs=30.2
Q ss_pred CCcEEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEeccccc
Q 044777 213 RSPVLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADAF 256 (513)
Q Consensus 213 ~~P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDef 256 (513)
....++.+.|+|||||||+.+.|+.. .+ ...+-+.++...+
T Consensus 33 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl--~~-p~~G~I~~~g~~i 73 (271)
T PRK13632 33 NEGEYVAILGHNGSGKSTISKILTGL--LK-PQSGEIKIDGITI 73 (271)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcC--CC-CCCceEEECCEec
Confidence 45679999999999999999999875 22 2345567766444
No 389
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=95.15 E-value=0.026 Score=56.18 Aligned_cols=41 Identities=27% Similarity=0.387 Sum_probs=30.6
Q ss_pred CCcEEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEeccccc
Q 044777 213 RSPVLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADAF 256 (513)
Q Consensus 213 ~~P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDef 256 (513)
....++.+.|+|||||||+.+.|+.. .. ...+-+.++...+
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~i~G~--~~-p~~G~i~~~g~~~ 66 (258)
T PRK13548 26 RPGEVVAILGPNGAGKSTLLRALSGE--LS-PDSGEVRLNGRPL 66 (258)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCC--CC-CCCCEEEECCEEc
Confidence 45678999999999999999999875 22 2345567766544
No 390
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=95.14 E-value=0.043 Score=58.15 Aligned_cols=98 Identities=21% Similarity=0.267 Sum_probs=53.0
Q ss_pred EEEEEecCCCCchHHHHHHHhcCcccccC-C-CCeEEecccccccchhhhhhhhccccCchhhHHHHHhHhHHHHHHHHH
Q 044777 216 VLLFMGGGMGAGKSTVLKDILKEPFWAGA-A-GNAVVIEADAFKESDVIYRALSSRSHVDMLQTAELVHQSSTDAASSLL 293 (513)
Q Consensus 216 ~LILmaG~pGAGKSTla~~Ll~~~f~~~~-~-~~aVvInaDefR~~~p~y~~l~~~G~~Dp~qaae~v~~eAtrlA~~li 293 (513)
-+++++|++||||||+.+.++.. +... . ...++.--|-+--.++....... .. .|. + +.. ...-....+
T Consensus 135 glilI~GpTGSGKTTtL~aLl~~--i~~~~~~~~~Ivt~EdpiE~~~~~~~~~~~--~v--~Q~-~-v~~-~~~~~~~~l 205 (358)
T TIGR02524 135 GIVFITGATGSGKSTLLAAIIRE--LAEAPDSHRKILTYEAPIEFVYDEIETISA--SV--CQS-E-IPR-HLNNFAAGV 205 (358)
T ss_pred CEEEEECCCCCCHHHHHHHHHHH--HhhcCCCCcEEEEeCCCceEeccccccccc--ee--eee-e-ccc-cccCHHHHH
Confidence 59999999999999999999865 2111 1 12233333333111111110000 00 000 0 000 001123456
Q ss_pred HHHHHCCCcEEEECcCCChHHHHHHHHHH
Q 044777 294 VTALNEGRDVIMDGTLSWVPFVVQTITMA 322 (513)
Q Consensus 294 ~~aL~~GrsVIlDtTlS~~~~~~qii~~A 322 (513)
..+|.+.=++|+=+-.++.+-....++.|
T Consensus 206 ~~aLR~~Pd~i~vGEiRd~et~~~al~aa 234 (358)
T TIGR02524 206 RNALRRKPHAILVGEARDAETISAALEAA 234 (358)
T ss_pred HHHhccCCCEEeeeeeCCHHHHHHHHHHH
Confidence 67888888999999899887766555544
No 391
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=95.13 E-value=0.061 Score=58.61 Aligned_cols=26 Identities=27% Similarity=0.460 Sum_probs=23.1
Q ss_pred CCcEEEEEecCCCCchHHHHHHHhcC
Q 044777 213 RSPVLLFMGGGMGAGKSTVLKDILKE 238 (513)
Q Consensus 213 ~~P~LILmaG~pGAGKSTla~~Ll~~ 238 (513)
..|.-+++.||||+|||++++.++.+
T Consensus 215 ~~p~gVLL~GPPGTGKT~LAraIA~e 240 (438)
T PTZ00361 215 KPPKGVILYGPPGTGKTLLAKAVANE 240 (438)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHh
Confidence 35677899999999999999999986
No 392
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=95.13 E-value=0.018 Score=54.05 Aligned_cols=24 Identities=29% Similarity=0.509 Sum_probs=18.6
Q ss_pred cEEEEEecCCCCchHHHHHHHhcC
Q 044777 215 PVLLFMGGGMGAGKSTVLKDILKE 238 (513)
Q Consensus 215 P~LILmaG~pGAGKSTla~~Ll~~ 238 (513)
+.+.+|.||||+||||++..++..
T Consensus 17 ~~~~~i~GpPGTGKT~~l~~~i~~ 40 (236)
T PF13086_consen 17 NGITLIQGPPGTGKTTTLASIIAQ 40 (236)
T ss_dssp SE-EEEE-STTSSHHHHHHHHHHH
T ss_pred CCCEEEECCCCCChHHHHHHHHHH
Confidence 347899999999999988888765
No 393
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=95.13 E-value=0.03 Score=53.41 Aligned_cols=41 Identities=29% Similarity=0.383 Sum_probs=30.4
Q ss_pred CCcEEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEeccccc
Q 044777 213 RSPVLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADAF 256 (513)
Q Consensus 213 ~~P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDef 256 (513)
....++.+.|+|||||||+.+.++.. .+ ...+-+.++...+
T Consensus 25 ~~Ge~~~l~G~nGsGKSTLl~~i~G~--~~-~~~G~v~~~g~~~ 65 (200)
T PRK13540 25 PAGGLLHLKGSNGAGKTTLLKLIAGL--LN-PEKGEILFERQSI 65 (200)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcC--CC-CCCeeEEECCCcc
Confidence 45678999999999999999999875 22 2345577776554
No 394
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.13 E-value=0.017 Score=56.90 Aligned_cols=42 Identities=19% Similarity=0.244 Sum_probs=30.0
Q ss_pred CCcEEEEEecCCCCchHHHHHHHhcCccccc----CCCCeEEeccccc
Q 044777 213 RSPVLLFMGGGMGAGKSTVLKDILKEPFWAG----AAGNAVVIEADAF 256 (513)
Q Consensus 213 ~~P~LILmaG~pGAGKSTla~~Ll~~~f~~~----~~~~aVvInaDef 256 (513)
....++.+.|+|||||||+.+.|+.. ... ...+-+.++...+
T Consensus 27 ~~Ge~~~i~G~nGsGKSTLl~~i~G~--~~~~~~~~~~G~i~~~g~~i 72 (250)
T PRK14247 27 PDNTITALMGPSGSGKSTLLRVFNRL--IELYPEARVSGEVYLDGQDI 72 (250)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcc--CCCCCCCCCceEEEECCEEC
Confidence 45678999999999999999999865 211 0235566765444
No 395
>COG0630 VirB11 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=95.13 E-value=0.069 Score=55.57 Aligned_cols=91 Identities=25% Similarity=0.291 Sum_probs=58.7
Q ss_pred CcEEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEe-cccccccchhhhhhhhccccCchhhHHHHHhHhHHHHHHHH
Q 044777 214 SPVLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVI-EADAFKESDVIYRALSSRSHVDMLQTAELVHQSSTDAASSL 292 (513)
Q Consensus 214 ~P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvI-naDefR~~~p~y~~l~~~G~~Dp~qaae~v~~eAtrlA~~l 292 (513)
...-++++|++||||||+.++++.. .+ .....+.| ++.+++-.|+.|-.+..+... . ..+.--+..+
T Consensus 142 ~~~siii~G~t~sGKTt~lnall~~--Ip-~~~rivtIEdt~E~~~~~~n~~~l~~r~~~---~------~~~~v~~~dl 209 (312)
T COG0630 142 ARKSIIICGGTASGKTTLLNALLDF--IP-PEERIVTIEDTPELKLPHENWVQLVTREGE---S------GSSEVSLEDL 209 (312)
T ss_pred cCCcEEEECCCCCCHHHHHHHHHHh--CC-chhcEEEEeccccccCCCCCEEEEEecCCC---C------CccccCHHHH
Confidence 4556789999999999999999874 21 12344444 666665444444333322100 0 0112234568
Q ss_pred HHHHHHCCCcEEEECcCCChHHHH
Q 044777 293 LVTALNEGRDVIMDGTLSWVPFVV 316 (513)
Q Consensus 293 i~~aL~~GrsVIlDtTlS~~~~~~ 316 (513)
+..|++.+-+.|+-+...+.+-..
T Consensus 210 l~aalR~rPd~IivgEvrg~e~~~ 233 (312)
T COG0630 210 LRAALRQRPDYIIVGELRGREAFV 233 (312)
T ss_pred HHHHHhcCCCeEEEeeeecHHHHH
Confidence 899999999999999999976433
No 396
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=95.12 E-value=0.016 Score=55.35 Aligned_cols=37 Identities=19% Similarity=0.238 Sum_probs=27.5
Q ss_pred CcEEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEecc
Q 044777 214 SPVLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEA 253 (513)
Q Consensus 214 ~P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvIna 253 (513)
...++.+.|+|||||||+.+.++.. .. ...+.+.++.
T Consensus 24 ~Ge~~~l~G~nGsGKSTLl~~l~Gl--~~-p~~G~i~~~g 60 (177)
T cd03222 24 EGEVIGIVGPNGTGKTTAVKILAGQ--LI-PNGDNDEWDG 60 (177)
T ss_pred CCCEEEEECCCCChHHHHHHHHHcC--CC-CCCcEEEECC
Confidence 4568999999999999999999864 21 2245566654
No 397
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.12 E-value=0.035 Score=57.97 Aligned_cols=56 Identities=20% Similarity=0.341 Sum_probs=43.8
Q ss_pred HHHHHHhHHHHhhhhhhHHHHHHHHHHHHHHHhcCCCCCCcccchhcccccCCCCCcEEEEEecCCCCchHHHHHHHhcC
Q 044777 159 VMQATREQRFERVTKNLKVARVFTTLVEEMKAMGLAPNDDSQCTEVMAPVALGDRSPVLLFMGGGMGAGKSTVLKDILKE 238 (513)
Q Consensus 159 v~~a~r~~rf~r~~~~~~v~r~~~~~ve~~~~~~~~~~~~~~~~~vl~p~~~~~~~P~LILmaG~pGAGKSTla~~Ll~~ 238 (513)
+-+..|=++|+.+.....+.+.|...++ ....|..+++.|++|+||||+++.++..
T Consensus 7 ~~~k~rP~~~~~iig~~~~~~~l~~~i~------------------------~~~~~~~~L~~G~~G~GKt~~a~~la~~ 62 (367)
T PRK14970 7 SARKYRPQTFDDVVGQSHITNTLLNAIE------------------------NNHLAQALLFCGPRGVGKTTCARILARK 62 (367)
T ss_pred HHHHHCCCcHHhcCCcHHHHHHHHHHHH------------------------cCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3455566788888888888887777772 1235678999999999999999999875
No 398
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.11 E-value=0.017 Score=54.90 Aligned_cols=43 Identities=23% Similarity=0.341 Sum_probs=29.7
Q ss_pred CCcEEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEeccccc
Q 044777 213 RSPVLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADAF 256 (513)
Q Consensus 213 ~~P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDef 256 (513)
....++.+.|+|||||||+.+.|+....+ ....+-+.++...+
T Consensus 31 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~-~~~~G~i~~~g~~~ 73 (192)
T cd03232 31 KPGTLTALMGESGAGKTTLLDVLAGRKTA-GVITGEILINGRPL 73 (192)
T ss_pred eCCcEEEEECCCCCCHHHHHHHHhCCCcC-CCcceEEEECCEeh
Confidence 45679999999999999999999863101 11245566765443
No 399
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=95.11 E-value=0.03 Score=54.53 Aligned_cols=40 Identities=33% Similarity=0.327 Sum_probs=29.5
Q ss_pred CcEEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEeccccc
Q 044777 214 SPVLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADAF 256 (513)
Q Consensus 214 ~P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDef 256 (513)
...++.+.|+|||||||+.+.|+.. .. ...+-+.++...+
T Consensus 5 ~Ge~~~l~G~nGsGKSTLl~~l~G~--~~-~~~G~i~~~g~~~ 44 (223)
T TIGR03771 5 KGELLGLLGPNGAGKTTLLRAILGL--IP-PAKGTVKVAGASP 44 (223)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC--CC-CCCceEEECCccc
Confidence 4568999999999999999999874 22 2245567776543
No 400
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.11 E-value=0.031 Score=63.26 Aligned_cols=55 Identities=22% Similarity=0.313 Sum_probs=45.4
Q ss_pred HHHHHhHHHHhhhhhhHHHHHHHHHHHHHHHhcCCCCCCcccchhcccccCCCCCcEEEEEecCCCCchHHHHHHHhcC
Q 044777 160 MQATREQRFERVTKNLKVARVFTTLVEEMKAMGLAPNDDSQCTEVMAPVALGDRSPVLLFMGGGMGAGKSTVLKDILKE 238 (513)
Q Consensus 160 ~~a~r~~rf~r~~~~~~v~r~~~~~ve~~~~~~~~~~~~~~~~~vl~p~~~~~~~P~LILmaG~pGAGKSTla~~Ll~~ 238 (513)
-+..|=+.|+.++....+.+.|...+. ..+-|..+|+.|++|.||||+++.+++.
T Consensus 7 a~KyRP~~f~dviGQe~vv~~L~~~l~------------------------~~rl~ha~Lf~Gp~GvGKTtlAr~lAk~ 61 (618)
T PRK14951 7 ARKYRPRSFSEMVGQEHVVQALTNALT------------------------QQRLHHAYLFTGTRGVGKTTVSRILAKS 61 (618)
T ss_pred HHHHCCCCHHHhcCcHHHHHHHHHHHH------------------------cCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 345555789999999888888888882 2346789999999999999999999876
No 401
>PF05729 NACHT: NACHT domain
Probab=95.11 E-value=0.016 Score=51.82 Aligned_cols=22 Identities=36% Similarity=0.783 Sum_probs=20.2
Q ss_pred EEEEecCCCCchHHHHHHHhcC
Q 044777 217 LLFMGGGMGAGKSTVLKDILKE 238 (513)
Q Consensus 217 LILmaG~pGAGKSTla~~Ll~~ 238 (513)
+++|.|.+|+||||++..+...
T Consensus 2 ~l~I~G~~G~GKStll~~~~~~ 23 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLLRKLAQQ 23 (166)
T ss_pred EEEEECCCCCChHHHHHHHHHH
Confidence 6899999999999999999876
No 402
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=95.10 E-value=0.027 Score=56.64 Aligned_cols=41 Identities=17% Similarity=0.208 Sum_probs=29.8
Q ss_pred CCcEEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEeccccc
Q 044777 213 RSPVLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADAF 256 (513)
Q Consensus 213 ~~P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDef 256 (513)
....++.+.|+|||||||+.+.|+.. .. ...+-+.++...+
T Consensus 31 ~~Ge~~~l~G~nGsGKSTLl~~i~Gl--~~-p~~G~i~~~g~~i 71 (280)
T PRK13649 31 EDGSYTAFIGHTGSGKSTIMQLLNGL--HV-PTQGSVRVDDTLI 71 (280)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCC--CC-CCceEEEECCEEc
Confidence 35568999999999999999999864 22 2345567765443
No 403
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.10 E-value=0.15 Score=58.27 Aligned_cols=183 Identities=18% Similarity=0.248 Sum_probs=102.5
Q ss_pred EEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEecccccccchhhhhh----hhcc---------------ccCchhh
Q 044777 216 VLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADAFKESDVIYRA----LSSR---------------SHVDMLQ 276 (513)
Q Consensus 216 ~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDefR~~~p~y~~----l~~~---------------G~~Dp~q 276 (513)
..+-+.||+|+||||++.-|.. ||. ...+-+.+|.-.+++..+.|-. +.++ |..++ .
T Consensus 495 e~vALVGPSGsGKSTiasLL~r--fY~-PtsG~IllDG~~i~~~~~~~lr~~Ig~V~QEPvLFs~sI~eNI~YG~~~~-t 570 (716)
T KOG0058|consen 495 EVVALVGPSGSGKSTIASLLLR--FYD-PTSGRILLDGVPISDINHKYLRRKIGLVGQEPVLFSGSIRENIAYGLDNA-T 570 (716)
T ss_pred CEEEEECCCCCCHHHHHHHHHH--hcC-CCCCeEEECCeehhhcCHHHHHHHeeeeeccceeecccHHHHHhcCCCCC-C
Confidence 3889999999999999997776 354 3456788999999876554311 0100 11000 0
Q ss_pred HHHHHhHhHHHHHHHH-HHHHHHCCCcEEEE---CcCCChHHHHHHHHHHhhhhhcccccccccccccCCccccchhhhh
Q 044777 277 TAELVHQSSTDAASSL-LVTALNEGRDVIMD---GTLSWVPFVVQTITMARNVHRHRYRMGVGYKKAEDGTVIENYWDRI 352 (513)
Q Consensus 277 aae~v~~eAtrlA~~l-i~~aL~~GrsVIlD---tTlS~~~~~~qii~~Ar~~h~~~y~~g~GYkv~~~g~~~e~Yw~~v 352 (513)
.+.+ +.|.+.|... ....+.+|+|-++. +.||+..+ |=|+.||++-
T Consensus 571 -~e~i-~~AAk~ANah~FI~~~p~gY~T~VGEkG~qLSGGQK--QRIAIARALl-------------------------- 620 (716)
T KOG0058|consen 571 -DEEI-EAAAKMANAHEFITNFPDGYNTVVGEKGSQLSGGQK--QRIAIARALL-------------------------- 620 (716)
T ss_pred -HHHH-HHHHHHhChHHHHHhCccccccccCCccccccchHH--HHHHHHHHHh--------------------------
Confidence 0111 1233333332 56677888888777 45777665 5567777741
Q ss_pred hhhhhhhcccCCCCeEEEEEE-----EecChHHHHHHHHHHHHhcCCcCchhHHHHHHHHHHHHHHHhhcccceEEEEec
Q 044777 353 GEREQAQDGKMRKPYRIELVG-----VVCDAYLAVVRGIRRAIMCRRAVRVKSQLKSHKRFANAFLTYCQLVDSARLYST 427 (513)
Q Consensus 353 ~~a~~~~~~~~~~gYrI~Lv~-----V~~dpelAv~Rv~~Rv~~gGh~VP~~~il~r~~rf~~nf~~~~~lvD~a~lyDN 427 (513)
++|- |-++- ....-|..|+-...|...+ |.|-+= .|+.+ -++.+|.+.+.|.
T Consensus 621 -----------r~P~-VLILDEATSALDaeSE~lVq~aL~~~~~~-rTVlvI----AHRLS------TV~~Ad~Ivvi~~ 677 (716)
T KOG0058|consen 621 -----------RNPR-VLILDEATSALDAESEYLVQEALDRLMQG-RTVLVI----AHRLS------TVRHADQIVVIDK 677 (716)
T ss_pred -----------cCCC-EEEEechhhhcchhhHHHHHHHHHHhhcC-CeEEEE----ehhhh------HhhhccEEEEEcC
Confidence 1121 22211 1234667777777776665 655432 12222 2456788877775
Q ss_pred CCCCCCCceEEEeeCCceeeeCh-hhhHHHHhhccC
Q 044777 428 NALEGPPKLIGWKERDRTLLVDP-DEIDCLKIIGKL 462 (513)
Q Consensus 428 s~~~~~p~LIa~k~~~~~~ivd~-~~~~~l~~~~~l 462 (513)
.. |.+...-+.++-++ ..|.+|.+++..
T Consensus 678 G~-------V~E~G~h~eLl~~~~gly~~Lv~~q~~ 706 (716)
T KOG0058|consen 678 GR-------VVEMGTHDELLSKPNGLYAKLVQRQLD 706 (716)
T ss_pred Ce-------EEecccHHHHhhCcccHHHHHHHHhcc
Confidence 54 22222223455566 578888776543
No 404
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=95.09 E-value=0.028 Score=56.32 Aligned_cols=41 Identities=20% Similarity=0.229 Sum_probs=30.2
Q ss_pred CCcEEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEeccccc
Q 044777 213 RSPVLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADAF 256 (513)
Q Consensus 213 ~~P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDef 256 (513)
....++.+.|+|||||||+.+.|+.. .. ...+.+.++...+
T Consensus 25 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl--~~-p~~G~i~~~g~~i 65 (271)
T PRK13638 25 SLSPVTGLVGANGCGKSTLFMNLSGL--LR-PQKGAVLWQGKPL 65 (271)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHcCC--CC-CCccEEEECCEEc
Confidence 45678999999999999999999764 22 2245567766544
No 405
>PF13173 AAA_14: AAA domain
Probab=95.08 E-value=0.02 Score=50.93 Aligned_cols=39 Identities=28% Similarity=0.487 Sum_probs=31.1
Q ss_pred EEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEecccccc
Q 044777 216 VLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADAFK 257 (513)
Q Consensus 216 ~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDefR 257 (513)
.++++.|+.|+||||+++++++... ...+.++||.|..+
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~~---~~~~~~yi~~~~~~ 41 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDLL---PPENILYINFDDPR 41 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhc---ccccceeeccCCHH
Confidence 4789999999999999999997621 23567888888874
No 406
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.07 E-value=0.018 Score=55.34 Aligned_cols=42 Identities=19% Similarity=0.329 Sum_probs=29.9
Q ss_pred CCcEEEEEecCCCCchHHHHHHHhcCccccc--CCCCeEEeccccc
Q 044777 213 RSPVLLFMGGGMGAGKSTVLKDILKEPFWAG--AAGNAVVIEADAF 256 (513)
Q Consensus 213 ~~P~LILmaG~pGAGKSTla~~Ll~~~f~~~--~~~~aVvInaDef 256 (513)
.+..++.+.|+|||||||+.+.|+.. ... ...+-+.++...+
T Consensus 31 ~~Ge~~~i~G~nGsGKSTLl~~l~G~--~~~~~~~~G~i~i~g~~~ 74 (202)
T cd03233 31 KPGEMVLVLGRPGSGCSTLLKALANR--TEGNVSVEGDIHYNGIPY 74 (202)
T ss_pred CCCcEEEEECCCCCCHHHHHHHhccc--CCCCCCcceEEEECCEEC
Confidence 45679999999999999999999875 210 1245566665443
No 407
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=95.06 E-value=0.018 Score=56.40 Aligned_cols=41 Identities=24% Similarity=0.264 Sum_probs=30.2
Q ss_pred CCcEEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEeccccc
Q 044777 213 RSPVLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADAF 256 (513)
Q Consensus 213 ~~P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDef 256 (513)
....++.+.|+|||||||+.+.|+.. .. ...+-+.++...+
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~G~--~~-~~~G~i~~~g~~~ 66 (242)
T PRK11124 26 PQGETLVLLGPSGAGKSSLLRVLNLL--EM-PRSGTLNIAGNHF 66 (242)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCC--CC-CCceEEEECCEec
Confidence 45678999999999999999999875 22 2345567765443
No 408
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=95.05 E-value=0.021 Score=55.80 Aligned_cols=42 Identities=21% Similarity=0.359 Sum_probs=31.7
Q ss_pred CCcEEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEeccccc
Q 044777 213 RSPVLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADAF 256 (513)
Q Consensus 213 ~~P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDef 256 (513)
..+.++++.|+|||||||++.+++.+. -..+..+.+++.++-
T Consensus 23 ~~g~~~~i~G~~GsGKt~l~~~~~~~~--~~~g~~~~y~~~e~~ 64 (234)
T PRK06067 23 PFPSLILIEGDHGTGKSVLSQQFVYGA--LKQGKKVYVITTENT 64 (234)
T ss_pred cCCcEEEEECCCCCChHHHHHHHHHHH--HhCCCEEEEEEcCCC
Confidence 467899999999999999999997541 123567778877543
No 409
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=95.05 E-value=0.014 Score=56.64 Aligned_cols=41 Identities=15% Similarity=0.274 Sum_probs=29.9
Q ss_pred CcEEEEEecCCCCchHHHHHHHhcCcccccC-CCCeEEeccccc
Q 044777 214 SPVLLFMGGGMGAGKSTVLKDILKEPFWAGA-AGNAVVIEADAF 256 (513)
Q Consensus 214 ~P~LILmaG~pGAGKSTla~~Ll~~~f~~~~-~~~aVvInaDef 256 (513)
.+.++++.|+||+|||+++.+++.+.. .. +.++++|..++=
T Consensus 18 ~gs~~li~G~~GsGKT~l~~q~l~~~~--~~~ge~vlyvs~ee~ 59 (226)
T PF06745_consen 18 KGSVVLISGPPGSGKTTLALQFLYNGL--KNFGEKVLYVSFEEP 59 (226)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHH--HHHT--EEEEESSS-
T ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHhh--hhcCCcEEEEEecCC
Confidence 567999999999999999999876521 23 567888877654
No 410
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=95.04 E-value=0.021 Score=56.16 Aligned_cols=43 Identities=23% Similarity=0.470 Sum_probs=32.8
Q ss_pred CCc-EEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEeccccccc
Q 044777 213 RSP-VLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADAFKE 258 (513)
Q Consensus 213 ~~P-~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDefR~ 258 (513)
.+| ..+-++|+|||||||++.++.+. .. ...+..+|-.|.+.+
T Consensus 10 ~~~~~~i~v~Gp~GSGKTaLie~~~~~--L~-~~~~~aVI~~Di~t~ 53 (202)
T COG0378 10 NRPMLRIGVGGPPGSGKTALIEKTLRA--LK-DEYKIAVITGDIYTK 53 (202)
T ss_pred cCceEEEEecCCCCcCHHHHHHHHHHH--HH-hhCCeEEEeceeech
Confidence 356 78999999999999999998765 21 125667888887753
No 411
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=95.04 E-value=0.016 Score=51.63 Aligned_cols=21 Identities=24% Similarity=0.498 Sum_probs=19.5
Q ss_pred EEEecCCCCchHHHHHHHhcC
Q 044777 218 LFMGGGMGAGKSTVLKDILKE 238 (513)
Q Consensus 218 ILmaG~pGAGKSTla~~Ll~~ 238 (513)
+++.|+||+|||++++.+++.
T Consensus 2 vlL~G~~G~GKt~l~~~la~~ 22 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAAL 22 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 588999999999999999886
No 412
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=95.04 E-value=0.018 Score=55.28 Aligned_cols=21 Identities=29% Similarity=0.414 Sum_probs=19.8
Q ss_pred EEEEEecCCCCchHHHHHHHh
Q 044777 216 VLLFMGGGMGAGKSTVLKDIL 236 (513)
Q Consensus 216 ~LILmaG~pGAGKSTla~~Ll 236 (513)
.++++.|||||||||+.+.+.
T Consensus 29 ~~~~ltG~Ng~GKStll~~i~ 49 (200)
T cd03280 29 RVLVITGPNAGGKTVTLKTLG 49 (200)
T ss_pred eEEEEECCCCCChHHHHHHHH
Confidence 689999999999999999987
No 413
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=95.04 E-value=0.019 Score=53.56 Aligned_cols=39 Identities=18% Similarity=0.357 Sum_probs=28.2
Q ss_pred CCCcEEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEecc
Q 044777 212 DRSPVLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEA 253 (513)
Q Consensus 212 ~~~P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvIna 253 (513)
-....++.+.|+|||||||+.+.++.. .+ ...+.+.++.
T Consensus 24 i~~Ge~~~i~G~nGsGKSTLl~~l~G~--~~-~~~G~i~~~~ 62 (166)
T cd03223 24 IKPGDRLLITGPSGTGKSSLFRALAGL--WP-WGSGRIGMPE 62 (166)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhcC--CC-CCCceEEECC
Confidence 345678999999999999999999875 22 2234455543
No 414
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=95.04 E-value=0.019 Score=59.18 Aligned_cols=43 Identities=28% Similarity=0.428 Sum_probs=30.0
Q ss_pred CCcEEEEEecCCCCchHHHHHHHhcCcccccC-C-----CCeEEecccccc
Q 044777 213 RSPVLLFMGGGMGAGKSTVLKDILKEPFWAGA-A-----GNAVVIEADAFK 257 (513)
Q Consensus 213 ~~P~LILmaG~pGAGKSTla~~Ll~~~f~~~~-~-----~~aVvInaDefR 257 (513)
..|..+++.|+||+||||+++.++.. ..+. . -..++||+....
T Consensus 38 ~~~~~i~I~G~~GtGKT~l~~~~~~~--l~~~~~~~~~~~~~v~in~~~~~ 86 (365)
T TIGR02928 38 SRPSNVFIYGKTGTGKTAVTKYVMKE--LEEAAEDRDVRVVTVYVNCQILD 86 (365)
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHH--HHHHhhccCCceEEEEEECCCCC
Confidence 35567899999999999999999864 1100 0 245677876654
No 415
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=95.03 E-value=0.023 Score=55.08 Aligned_cols=41 Identities=10% Similarity=0.153 Sum_probs=30.1
Q ss_pred CcEEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEeccccc
Q 044777 214 SPVLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADAF 256 (513)
Q Consensus 214 ~P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDef 256 (513)
+..++++.|+||+||||++..++.+. ...+.++++++.+.-
T Consensus 19 ~G~~~~i~G~~G~GKT~l~~~~~~~~--~~~g~~~~~is~e~~ 59 (229)
T TIGR03881 19 RGFFVAVTGEPGTGKTIFCLHFAYKG--LRDGDPVIYVTTEES 59 (229)
T ss_pred CCeEEEEECCCCCChHHHHHHHHHHH--HhcCCeEEEEEccCC
Confidence 56799999999999999998876431 112456777777554
No 416
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=95.02 E-value=0.018 Score=57.38 Aligned_cols=40 Identities=25% Similarity=0.290 Sum_probs=29.0
Q ss_pred CCcEEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEecccc
Q 044777 213 RSPVLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADA 255 (513)
Q Consensus 213 ~~P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDe 255 (513)
....++.+.|+|||||||+.+.|+.. .. ...+-+.++...
T Consensus 25 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl--~~-p~~G~i~~~g~~ 64 (255)
T PRK11248 25 ESGELLVVLGPSGCGKTTLLNLIAGF--VP-YQHGSITLDGKP 64 (255)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCC--CC-CCCcEEEECCEE
Confidence 45679999999999999999999864 11 223556665533
No 417
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=95.02 E-value=0.018 Score=55.62 Aligned_cols=41 Identities=22% Similarity=0.347 Sum_probs=29.7
Q ss_pred CCcEEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEeccccc
Q 044777 213 RSPVLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADAF 256 (513)
Q Consensus 213 ~~P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDef 256 (513)
....++.+.|+|||||||+.+.++.. .+ ...+-+.++.-.+
T Consensus 38 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl--~~-~~~G~i~~~g~~~ 78 (226)
T cd03248 38 HPGEVTALVGPSGSGKSTVVALLENF--YQ-PQGGQVLLDGKPI 78 (226)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcC--cC-CCCcEEEECCCch
Confidence 46679999999999999999999875 21 2235566665333
No 418
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=95.01 E-value=0.074 Score=55.74 Aligned_cols=25 Identities=28% Similarity=0.453 Sum_probs=22.5
Q ss_pred CcEEEEEecCCCCchHHHHHHHhcC
Q 044777 214 SPVLLFMGGGMGAGKSTVLKDILKE 238 (513)
Q Consensus 214 ~P~LILmaG~pGAGKSTla~~Ll~~ 238 (513)
.|.-+++.||||+||||+++.++..
T Consensus 155 ~p~gvLL~GppGtGKT~lakaia~~ 179 (364)
T TIGR01242 155 PPKGVLLYGPPGTGKTLLAKAVAHE 179 (364)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHh
Confidence 4667899999999999999999886
No 419
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=95.00 E-value=0.034 Score=63.68 Aligned_cols=55 Identities=18% Similarity=0.315 Sum_probs=46.1
Q ss_pred HHHHHhHHHHhhhhhhHHHHHHHHHHHHHHHhcCCCCCCcccchhcccccCCCCCcEEEEEecCCCCchHHHHHHHhcC
Q 044777 160 MQATREQRFERVTKNLKVARVFTTLVEEMKAMGLAPNDDSQCTEVMAPVALGDRSPVLLFMGGGMGAGKSTVLKDILKE 238 (513)
Q Consensus 160 ~~a~r~~rf~r~~~~~~v~r~~~~~ve~~~~~~~~~~~~~~~~~vl~p~~~~~~~P~LILmaG~pGAGKSTla~~Ll~~ 238 (513)
...-|=++|+.++....+.+.|...++ ..+-|..+|+.|++|.||||+++.+++.
T Consensus 7 arKYRP~tFddIIGQe~vv~~L~~ai~------------------------~~rl~Ha~Lf~GP~GvGKTTlAriLAk~ 61 (709)
T PRK08691 7 ARKWRPKTFADLVGQEHVVKALQNALD------------------------EGRLHHAYLLTGTRGVGKTTIARILAKS 61 (709)
T ss_pred HHHhCCCCHHHHcCcHHHHHHHHHHHH------------------------cCCCCeEEEEECCCCCcHHHHHHHHHHH
Confidence 445566799999999999999888882 1345789999999999999999999886
No 420
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=95.00 E-value=0.027 Score=62.32 Aligned_cols=53 Identities=23% Similarity=0.271 Sum_probs=42.2
Q ss_pred HHHhHHHHhhhhhhHHHHHHHHHHHHHHHhcCCCCCCcccchhcccccCCCCCcEEEEEecCCCCchHHHHHHHhcC
Q 044777 162 ATREQRFERVTKNLKVARVFTTLVEEMKAMGLAPNDDSQCTEVMAPVALGDRSPVLLFMGGGMGAGKSTVLKDILKE 238 (513)
Q Consensus 162 a~r~~rf~r~~~~~~v~r~~~~~ve~~~~~~~~~~~~~~~~~vl~p~~~~~~~P~LILmaG~pGAGKSTla~~Ll~~ 238 (513)
..|=++|+.++....+.+.+...++ ..+-|..+++.|++|+||||+++.+++.
T Consensus 14 kyRP~~f~dliGq~~vv~~L~~ai~------------------------~~ri~~a~Lf~Gp~G~GKTT~ArilAk~ 66 (507)
T PRK06645 14 KYRPSNFAELQGQEVLVKVLSYTIL------------------------NDRLAGGYLLTGIRGVGKTTSARIIAKA 66 (507)
T ss_pred hhCCCCHHHhcCcHHHHHHHHHHHH------------------------cCCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 3455788888888888887777662 2335778999999999999999999886
No 421
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=94.99 E-value=0.031 Score=56.51 Aligned_cols=42 Identities=19% Similarity=0.143 Sum_probs=30.8
Q ss_pred CCcEEEEEecCCCCchHHHHHHHhcCcccccCC--CCeEEeccccc
Q 044777 213 RSPVLLFMGGGMGAGKSTVLKDILKEPFWAGAA--GNAVVIEADAF 256 (513)
Q Consensus 213 ~~P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~--~~aVvInaDef 256 (513)
....++.|.|+|||||||+.+.|+.. ..... .+-+.++...+
T Consensus 31 ~~Ge~~~I~G~nGaGKSTLl~~l~G~--~~p~~g~~G~i~i~g~~~ 74 (282)
T PRK13640 31 PRGSWTALIGHNGSGKSTISKLINGL--LLPDDNPNSKITVDGITL 74 (282)
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhcc--cCCCCCCCcEEEECCEEC
Confidence 35679999999999999999999875 21111 15677777655
No 422
>CHL00195 ycf46 Ycf46; Provisional
Probab=94.99 E-value=0.13 Score=56.70 Aligned_cols=39 Identities=26% Similarity=0.419 Sum_probs=31.3
Q ss_pred CCcEEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEeccccc
Q 044777 213 RSPVLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADAF 256 (513)
Q Consensus 213 ~~P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDef 256 (513)
..|.-+++.||||+|||++++.++.+ | +.+.+.++...+
T Consensus 257 ~~pkGILL~GPpGTGKTllAkaiA~e--~---~~~~~~l~~~~l 295 (489)
T CHL00195 257 PTPRGLLLVGIQGTGKSLTAKAIAND--W---QLPLLRLDVGKL 295 (489)
T ss_pred CCCceEEEECCCCCcHHHHHHHHHHH--h---CCCEEEEEhHHh
Confidence 46788999999999999999999997 4 345666666554
No 423
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=94.99 E-value=0.019 Score=54.70 Aligned_cols=39 Identities=26% Similarity=0.371 Sum_probs=28.7
Q ss_pred CCCcEEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEecc
Q 044777 212 DRSPVLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEA 253 (513)
Q Consensus 212 ~~~P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvIna 253 (513)
-....++.+.|+|||||||+.+.++.. ++ ...+-+.++.
T Consensus 28 i~~G~~~~i~G~nG~GKSTLl~~i~G~--~~-~~~G~i~~~g 66 (204)
T cd03250 28 VPKGELVAIVGPVGSGKSSLLSALLGE--LE-KLSGSVSVPG 66 (204)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhCc--CC-CCCCeEEEcC
Confidence 346779999999999999999999875 22 2334455554
No 424
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=94.98 E-value=0.034 Score=62.78 Aligned_cols=55 Identities=15% Similarity=0.311 Sum_probs=43.4
Q ss_pred HHHHHhHHHHhhhhhhHHHHHHHHHHHHHHHhcCCCCCCcccchhcccccCCCCCcEEEEEecCCCCchHHHHHHHhcC
Q 044777 160 MQATREQRFERVTKNLKVARVFTTLVEEMKAMGLAPNDDSQCTEVMAPVALGDRSPVLLFMGGGMGAGKSTVLKDILKE 238 (513)
Q Consensus 160 ~~a~r~~rf~r~~~~~~v~r~~~~~ve~~~~~~~~~~~~~~~~~vl~p~~~~~~~P~LILmaG~pGAGKSTla~~Ll~~ 238 (513)
-+.-|=+.|+.++....+.+.|...+. ..+.|..+|+.||+|+||||+|+.+++.
T Consensus 7 ~~KyRP~~F~dIIGQe~iv~~L~~aI~------------------------~~rl~hA~Lf~GP~GvGKTTlA~~lAk~ 61 (605)
T PRK05896 7 YRKYRPHNFKQIIGQELIKKILVNAIL------------------------NNKLTHAYIFSGPRGIGKTSIAKIFAKA 61 (605)
T ss_pred HHHhCCCCHHHhcCcHHHHHHHHHHHH------------------------cCCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 344555788888888888888877772 2345678999999999999999999875
No 425
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=94.98 E-value=0.019 Score=56.34 Aligned_cols=39 Identities=23% Similarity=0.182 Sum_probs=28.5
Q ss_pred CCcEEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEeccc
Q 044777 213 RSPVLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEAD 254 (513)
Q Consensus 213 ~~P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaD 254 (513)
....++.+.|+|||||||+.+.|+.. .+ ...+-+.++..
T Consensus 45 ~~Ge~~~i~G~NGsGKSTLl~~i~Gl--~~-p~~G~i~~~g~ 83 (236)
T cd03267 45 EKGEIVGFIGPNGAGKTTTLKILSGL--LQ-PTSGEVRVAGL 83 (236)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCC--cC-CCceEEEECCE
Confidence 45679999999999999999999874 21 22355566543
No 426
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=94.97 E-value=0.02 Score=55.36 Aligned_cols=37 Identities=24% Similarity=0.456 Sum_probs=28.1
Q ss_pred CCcEEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEec
Q 044777 213 RSPVLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIE 252 (513)
Q Consensus 213 ~~P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvIn 252 (513)
....++.+.|+|||||||+.+.|+.. .. ...+-+.++
T Consensus 32 ~~Ge~~~l~G~nGsGKSTLl~~i~G~--~~-~~~G~i~~~ 68 (224)
T TIGR02324 32 NAGECVALSGPSGAGKSTLLKSLYAN--YL-PDSGRILVR 68 (224)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCC--CC-CCCCeEEEe
Confidence 45679999999999999999999865 22 224556776
No 427
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=94.97 E-value=0.019 Score=56.47 Aligned_cols=42 Identities=17% Similarity=0.213 Sum_probs=29.5
Q ss_pred CCcEEEEEecCCCCchHHHHHHHhcCccccc----CCCCeEEeccccc
Q 044777 213 RSPVLLFMGGGMGAGKSTVLKDILKEPFWAG----AAGNAVVIEADAF 256 (513)
Q Consensus 213 ~~P~LILmaG~pGAGKSTla~~Ll~~~f~~~----~~~~aVvInaDef 256 (513)
....++.+.|+|||||||+.+.|+.- ... ...+-+.++...+
T Consensus 27 ~~Ge~~~i~G~nGsGKSTLl~~i~Gl--~~~~~~~~~~G~i~i~g~~~ 72 (250)
T PRK14262 27 FKNQITAIIGPSGCGKTTLLRSINRM--NDHIPGFRVEGKIYFKGQDI 72 (250)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcc--ccCCCCCCcceEEEECCEEc
Confidence 45678999999999999999999853 110 0235567766443
No 428
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=94.97 E-value=0.029 Score=57.62 Aligned_cols=39 Identities=21% Similarity=0.218 Sum_probs=29.0
Q ss_pred CCCcEEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEecc
Q 044777 212 DRSPVLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEA 253 (513)
Q Consensus 212 ~~~P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvIna 253 (513)
-+...++-+-|+|||||||+.+.|+.. ... ..+-+.++.
T Consensus 28 i~~Gei~gllG~NGAGKTTllk~l~gl--~~p-~~G~i~i~G 66 (293)
T COG1131 28 VEPGEIFGLLGPNGAGKTTLLKILAGL--LKP-TSGEILVLG 66 (293)
T ss_pred EcCCeEEEEECCCCCCHHHHHHHHhCC--cCC-CceEEEEcC
Confidence 345679999999999999999999875 222 334556655
No 429
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=94.97 E-value=0.02 Score=56.83 Aligned_cols=26 Identities=31% Similarity=0.386 Sum_probs=23.1
Q ss_pred CCcEEEEEecCCCCchHHHHHHHhcC
Q 044777 213 RSPVLLFMGGGMGAGKSTVLKDILKE 238 (513)
Q Consensus 213 ~~P~LILmaG~pGAGKSTla~~Ll~~ 238 (513)
....++.+.|+|||||||+.+.|+..
T Consensus 28 ~~Ge~~~i~G~nGsGKSTLl~~laGl 53 (258)
T PRK14241 28 EPRSVTAFIGPSGCGKSTVLRTLNRM 53 (258)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhcc
Confidence 45679999999999999999999864
No 430
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=94.96 E-value=0.019 Score=55.95 Aligned_cols=38 Identities=24% Similarity=0.278 Sum_probs=28.1
Q ss_pred CCcEEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEecc
Q 044777 213 RSPVLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEA 253 (513)
Q Consensus 213 ~~P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvIna 253 (513)
....++.+.|+|||||||+.+.++.. ++ ...+-+.++.
T Consensus 46 ~~Ge~~~i~G~nGsGKSTLl~~l~G~--~~-p~~G~i~~~g 83 (224)
T cd03220 46 PRGERIGLIGRNGAGKSTLLRLLAGI--YP-PDSGTVTVRG 83 (224)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCC--CC-CCceEEEECC
Confidence 45678999999999999999999874 22 2234556654
No 431
>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]
Probab=94.96 E-value=0.42 Score=46.50 Aligned_cols=24 Identities=46% Similarity=0.566 Sum_probs=21.9
Q ss_pred cEEEEEecCCCCchHHHHHHHhcC
Q 044777 215 PVLLFMGGGMGAGKSTVLKDILKE 238 (513)
Q Consensus 215 P~LILmaG~pGAGKSTla~~Ll~~ 238 (513)
+.++++.|.||+||||+.+...+.
T Consensus 4 ~kvvvitGVpGvGKTTVl~~~~~~ 27 (189)
T COG2019 4 RKVVVITGVPGVGKTTVLKIALKE 27 (189)
T ss_pred ceEEEEEcCCCCChHHHHHHHHHH
Confidence 678999999999999999988776
No 432
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=94.96 E-value=0.033 Score=54.59 Aligned_cols=41 Identities=22% Similarity=0.234 Sum_probs=29.9
Q ss_pred CCcEEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEeccccc
Q 044777 213 RSPVLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADAF 256 (513)
Q Consensus 213 ~~P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDef 256 (513)
....++.+.|+|||||||+.+.|+.. .+ ...+-+.++...+
T Consensus 24 ~~Ge~~~l~G~nGsGKSTLl~~i~G~--~~-~~~G~i~i~g~~~ 64 (237)
T TIGR00968 24 PTGSLVALLGPSGSGKSTLLRIIAGL--EQ-PDSGRIRLNGQDA 64 (237)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcC--CC-CCceEEEECCEEc
Confidence 35569999999999999999999874 22 2245566765544
No 433
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=94.95 E-value=0.019 Score=56.93 Aligned_cols=40 Identities=23% Similarity=0.253 Sum_probs=30.0
Q ss_pred CCcEEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEecccc
Q 044777 213 RSPVLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADA 255 (513)
Q Consensus 213 ~~P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDe 255 (513)
....++.+.|+|||||||+++.|+.. .. ...+-+.++...
T Consensus 30 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl--~~-p~~G~i~~~g~~ 69 (258)
T PRK11701 30 YPGEVLGIVGESGSGKTTLLNALSAR--LA-PDAGEVHYRMRD 69 (258)
T ss_pred eCCCEEEEECCCCCCHHHHHHHHhCC--CC-CCCCEEEECCcc
Confidence 46679999999999999999999875 21 234556666654
No 434
>KOG1384 consensus tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis]
Probab=94.95 E-value=0.23 Score=52.42 Aligned_cols=85 Identities=25% Similarity=0.436 Sum_probs=59.8
Q ss_pred CcEEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEecccccccchhhhhhh----h------cc-------ccCchhh
Q 044777 214 SPVLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADAFKESDVIYRAL----S------SR-------SHVDMLQ 276 (513)
Q Consensus 214 ~P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDefR~~~p~y~~l----~------~~-------G~~Dp~q 276 (513)
+-++++|.|+.|||||-++-.|+.+ | +..+||+|-+-- |+++ + .. |+.+|.
T Consensus 6 k~KVvvI~G~TGsGKSrLaVdLA~r-f------~~EIINsDkmQv----YkGldivTnK~t~~e~~gVPHHLlg~l~~~- 73 (348)
T KOG1384|consen 6 KDKVVVIMGATGAGKSRLAVDLATR-F------PGEIINSDKMQV----YKGLDIVTNKITLQERKGVPHHLLGHLHPE- 73 (348)
T ss_pred CceEEEEecCCCCChhhhHHHHHHh-C------Cceeecccceee----ecCcccccccCChhhcCCCChHHhCcCChH-
Confidence 4578999999999999999999998 3 667999998731 1111 0 00 222332
Q ss_pred HHHHHhHhHHHHHHHHHHHHHHCCC-cEEEECcCCC
Q 044777 277 TAELVHQSSTDAASSLLVTALNEGR-DVIMDGTLSW 311 (513)
Q Consensus 277 aae~v~~eAtrlA~~li~~aL~~Gr-sVIlDtTlS~ 311 (513)
.+++..+-.+.+...++...++|+ ++|.-||.+-
T Consensus 74 -~e~t~~~F~~~a~~aie~I~~rgk~PIv~GGs~~y 108 (348)
T KOG1384|consen 74 -AEYTAGEFEDDASRAIEEIHSRGKLPIVVGGSNSY 108 (348)
T ss_pred -hhccHHHHHHHHHHHHHHHHhCCCCCEEeCCchhh
Confidence 256555555677788889998887 8888888765
No 435
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=94.94 E-value=0.031 Score=55.32 Aligned_cols=40 Identities=25% Similarity=0.381 Sum_probs=30.4
Q ss_pred CCcEEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEeccccc
Q 044777 213 RSPVLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADAF 256 (513)
Q Consensus 213 ~~P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDef 256 (513)
....++.+.|+|||||||+.+.++.- .+ ..+-+.++...+
T Consensus 20 ~~Gei~~l~G~nGsGKSTLl~~l~Gl--~~--~~G~i~~~g~~i 59 (248)
T PRK03695 20 RAGEILHLVGPNGAGKSTLLARMAGL--LP--GSGSIQFAGQPL 59 (248)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHcCC--CC--CCeEEEECCEec
Confidence 45679999999999999999999864 22 245677766544
No 436
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=94.94 E-value=0.021 Score=55.93 Aligned_cols=22 Identities=32% Similarity=0.590 Sum_probs=20.5
Q ss_pred cEEEEEecCCCCchHHHHHHHh
Q 044777 215 PVLLFMGGGMGAGKSTVLKDIL 236 (513)
Q Consensus 215 P~LILmaG~pGAGKSTla~~Ll 236 (513)
+..+++.||||+||||+.+.+.
T Consensus 29 ~~~~~itGpNg~GKStlLk~i~ 50 (213)
T cd03281 29 PSIMVITGPNSSGKSVYLKQVA 50 (213)
T ss_pred ceEEEEECCCCCChHHHHHHHH
Confidence 5899999999999999999986
No 437
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=94.93 E-value=0.033 Score=55.15 Aligned_cols=42 Identities=21% Similarity=0.327 Sum_probs=30.1
Q ss_pred CCcEEEEEecCCCCchHHHHHHHhcCccccc---CCCCeEEeccccc
Q 044777 213 RSPVLLFMGGGMGAGKSTVLKDILKEPFWAG---AAGNAVVIEADAF 256 (513)
Q Consensus 213 ~~P~LILmaG~pGAGKSTla~~Ll~~~f~~~---~~~~aVvInaDef 256 (513)
....++.+.|+|||||||+.+.|+.. .+. ...+-+.++...+
T Consensus 27 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl--~~~~~~~~~G~i~~~g~~i 71 (254)
T PRK10418 27 QRGRVLALVGGSGSGKSLTCAAALGI--LPAGVRQTAGRVLLDGKPV 71 (254)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCC--CCCCCCCcCCEEEECCeec
Confidence 45679999999999999999999865 111 0235567765444
No 438
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=94.92 E-value=0.021 Score=52.23 Aligned_cols=38 Identities=32% Similarity=0.250 Sum_probs=28.0
Q ss_pred CCcEEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEecc
Q 044777 213 RSPVLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEA 253 (513)
Q Consensus 213 ~~P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvIna 253 (513)
....++.+.|+|||||||+.+.+... .+ ...+-+.++.
T Consensus 24 ~~Ge~~~i~G~nGsGKStLl~~l~G~--~~-~~~G~i~~~~ 61 (144)
T cd03221 24 NPGDRIGLVGRNGAGKSTLLKLIAGE--LE-PDEGIVTWGS 61 (144)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHcCC--CC-CCceEEEECC
Confidence 45578999999999999999999775 22 2244456654
No 439
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=94.92 E-value=0.039 Score=60.07 Aligned_cols=57 Identities=21% Similarity=0.288 Sum_probs=46.0
Q ss_pred HHHHHHHhHHHHhhhhhhHHHHHHHHHHHHHHHhcCCCCCCcccchhcccccCCCCCcEEEEEecCCCCchHHHHHHHhc
Q 044777 158 IVMQATREQRFERVTKNLKVARVFTTLVEEMKAMGLAPNDDSQCTEVMAPVALGDRSPVLLFMGGGMGAGKSTVLKDILK 237 (513)
Q Consensus 158 ~v~~a~r~~rf~r~~~~~~v~r~~~~~ve~~~~~~~~~~~~~~~~~vl~p~~~~~~~P~LILmaG~pGAGKSTla~~Ll~ 237 (513)
.+-+..|=++|+.+.....+...|...+. ..+-|..+++.|++|.||||+++.+++
T Consensus 6 ~~~~kyRP~~~~diiGq~~~v~~L~~~i~------------------------~~~i~ha~Lf~Gp~G~GKtt~A~~lAk 61 (451)
T PRK06305 6 VSSRKYRPQTFSEILGQDAVVAVLKNALR------------------------FNRAAHAYLFSGIRGTGKTTLARIFAK 61 (451)
T ss_pred HHHHHhCCCCHHHhcCcHHHHHHHHHHHH------------------------cCCCceEEEEEcCCCCCHHHHHHHHHH
Confidence 34556677899999999988887777772 123578899999999999999999987
Q ss_pred C
Q 044777 238 E 238 (513)
Q Consensus 238 ~ 238 (513)
.
T Consensus 62 ~ 62 (451)
T PRK06305 62 A 62 (451)
T ss_pred H
Confidence 6
No 440
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=94.91 E-value=0.027 Score=55.77 Aligned_cols=41 Identities=12% Similarity=0.138 Sum_probs=29.3
Q ss_pred CcEEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEeccccc
Q 044777 214 SPVLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADAF 256 (513)
Q Consensus 214 ~P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDef 256 (513)
...++++.|+|||||||++.+++... - ..+...++|+.++-
T Consensus 23 ~g~~~~i~G~~G~GKTtl~~~~~~~~-~-~~g~~~~yi~~e~~ 63 (230)
T PRK08533 23 AGSLILIEGDESTGKSILSQRLAYGF-L-QNGYSVSYVSTQLT 63 (230)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH-H-hCCCcEEEEeCCCC
Confidence 45599999999999999987765531 1 12456677877654
No 441
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=94.91 E-value=0.021 Score=55.77 Aligned_cols=41 Identities=22% Similarity=0.255 Sum_probs=29.9
Q ss_pred CCcEEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEeccccc
Q 044777 213 RSPVLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADAF 256 (513)
Q Consensus 213 ~~P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDef 256 (513)
.+..++.+.|+|||||||+.+.|+.. .. ...+-+.++...+
T Consensus 26 ~~Ge~~~l~G~nGsGKSTLl~~l~G~--~~-p~~G~i~~~g~~~ 66 (242)
T TIGR03411 26 DPGELRVIIGPNGAGKTTMMDVITGK--TR-PDEGSVLFGGTDL 66 (242)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCC--CC-CCCCeEEECCeec
Confidence 45678999999999999999999875 21 2235566665433
No 442
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=94.91 E-value=0.02 Score=57.44 Aligned_cols=40 Identities=18% Similarity=0.219 Sum_probs=29.0
Q ss_pred CCcEEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEecccc
Q 044777 213 RSPVLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADA 255 (513)
Q Consensus 213 ~~P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDe 255 (513)
....++.+.|+|||||||+.+.|+.. .. ...+-+.++...
T Consensus 36 ~~Ge~~~I~G~NGsGKSTLlk~l~Gl--~~-p~~G~i~~~g~~ 75 (257)
T PRK11247 36 PAGQFVAVVGRSGCGKSTLLRLLAGL--ET-PSAGELLAGTAP 75 (257)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcC--CC-CCCeEEEECCEE
Confidence 45679999999999999999999874 21 223445665543
No 443
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=94.91 E-value=0.02 Score=56.76 Aligned_cols=24 Identities=33% Similarity=0.437 Sum_probs=21.5
Q ss_pred CcEEEEEecCCCCchHHHHHHHhc
Q 044777 214 SPVLLFMGGGMGAGKSTVLKDILK 237 (513)
Q Consensus 214 ~P~LILmaG~pGAGKSTla~~Ll~ 237 (513)
.|.+..|.|+|||||||+.+++.-
T Consensus 24 ~~~~~~IvG~NGsGKStll~Ai~~ 47 (251)
T cd03273 24 DPQFNAITGLNGSGKSNILDAICF 47 (251)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHH
Confidence 477899999999999999999964
No 444
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.91 E-value=0.035 Score=54.16 Aligned_cols=41 Identities=17% Similarity=0.298 Sum_probs=30.5
Q ss_pred CCcEEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEeccccc
Q 044777 213 RSPVLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADAF 256 (513)
Q Consensus 213 ~~P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDef 256 (513)
....++.+.|+|||||||+.+.|+.. .+ ...+.+.++...+
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~l~g~--~~-~~~G~i~~~g~~~ 64 (232)
T cd03300 24 KEGEFFTLLGPSGCGKTTLLRLIAGF--ET-PTSGEILLDGKDI 64 (232)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcC--CC-CCceEEEECCEEc
Confidence 45679999999999999999999875 32 2345566765444
No 445
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=94.91 E-value=0.021 Score=55.11 Aligned_cols=20 Identities=35% Similarity=0.509 Sum_probs=18.9
Q ss_pred EEEEecCCCCchHHHHHHHh
Q 044777 217 LLFMGGGMGAGKSTVLKDIL 236 (513)
Q Consensus 217 LILmaG~pGAGKSTla~~Ll 236 (513)
++.|.|+|||||||+.+.+.
T Consensus 24 ~~~i~G~nGsGKStll~al~ 43 (197)
T cd03278 24 LTAIVGPNGSGKSNIIDAIR 43 (197)
T ss_pred cEEEECCCCCCHHHHHHHHH
Confidence 88999999999999999986
No 446
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.91 E-value=0.022 Score=52.08 Aligned_cols=40 Identities=23% Similarity=0.380 Sum_probs=29.0
Q ss_pred CcEEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEeccccc
Q 044777 214 SPVLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADAF 256 (513)
Q Consensus 214 ~P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDef 256 (513)
...++.+.|+|||||||+.+.+... .. ...+-+.++...+
T Consensus 24 ~g~~~~i~G~nGsGKStll~~l~g~--~~-~~~G~i~~~~~~~ 63 (157)
T cd00267 24 AGEIVALVGPNGSGKSTLLRAIAGL--LK-PTSGEILIDGKDI 63 (157)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC--CC-CCccEEEECCEEc
Confidence 4478999999999999999999875 22 2234456666544
No 447
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=94.90 E-value=0.073 Score=57.28 Aligned_cols=76 Identities=22% Similarity=0.327 Sum_probs=49.6
Q ss_pred HHhHHHHhhhhhhHHHHHHHHHHHHHHHhcCCCCCCcccchhcccccCCCCCcEEEEEecCCCCchHHHHHHHhcCcccc
Q 044777 163 TREQRFERVTKNLKVARVFTTLVEEMKAMGLAPNDDSQCTEVMAPVALGDRSPVLLFMGGGMGAGKSTVLKDILKEPFWA 242 (513)
Q Consensus 163 ~r~~rf~r~~~~~~v~r~~~~~ve~~~~~~~~~~~~~~~~~vl~p~~~~~~~P~LILmaG~pGAGKSTla~~Ll~~~f~~ 242 (513)
.+...|+-+..+.-+--.|-+=+- .+.....|.. ..-..|..+++.||||.|||.+++.++.+
T Consensus 109 ~~~~~f~~~~g~~~~~p~f~dk~~-----------~hi~kn~l~~--~~ik~PlgllL~GPPGcGKTllAraiA~e---- 171 (413)
T PLN00020 109 QRTRSFDNLVGGYYIAPAFMDKVA-----------VHIAKNFLAL--PNIKVPLILGIWGGKGQGKSFQCELVFKK---- 171 (413)
T ss_pred hhhcchhhhcCccccCHHHHHHHH-----------HHHHhhhhhc--cCCCCCeEEEeeCCCCCCHHHHHHHHHHH----
Confidence 344566666666655555443220 1111233321 22367999999999999999999999997
Q ss_pred cCCCCeEEeccccc
Q 044777 243 GAAGNAVVIEADAF 256 (513)
Q Consensus 243 ~~~~~aVvInaDef 256 (513)
.+.+.+.+++-++
T Consensus 172 -lg~~~i~vsa~eL 184 (413)
T PLN00020 172 -MGIEPIVMSAGEL 184 (413)
T ss_pred -cCCCeEEEEHHHh
Confidence 2467788888887
No 448
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=94.90 E-value=0.02 Score=56.91 Aligned_cols=26 Identities=27% Similarity=0.319 Sum_probs=22.9
Q ss_pred CCcEEEEEecCCCCchHHHHHHHhcC
Q 044777 213 RSPVLLFMGGGMGAGKSTVLKDILKE 238 (513)
Q Consensus 213 ~~P~LILmaG~pGAGKSTla~~Ll~~ 238 (513)
....++.+.|+|||||||+.+.|+..
T Consensus 37 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl 62 (260)
T PRK10744 37 AKNQVTAFIGPSGCGKSTLLRTFNRM 62 (260)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 45678999999999999999999864
No 449
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=94.90 E-value=0.021 Score=55.79 Aligned_cols=41 Identities=22% Similarity=0.347 Sum_probs=29.5
Q ss_pred CCcEEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEeccccc
Q 044777 213 RSPVLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADAF 256 (513)
Q Consensus 213 ~~P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDef 256 (513)
....++.+.|+|||||||+.+.++.. .+ ...+-+.++...+
T Consensus 29 ~~Ge~~~i~G~nGsGKSTLl~~l~G~--~~-p~~G~i~~~g~~~ 69 (237)
T PRK11614 29 NQGEIVTLIGANGAGKTTLLGTLCGD--PR-ATSGRIVFDGKDI 69 (237)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHcCC--CC-CCCceEEECCEec
Confidence 45678999999999999999999764 22 2234566665433
No 450
>PF02881 SRP54_N: SRP54-type protein, helical bundle domain; InterPro: IPR013822 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the N-terminal helical bundle domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 1J8M_F 1J8Y_F 2J37_W 2OG2_A 3B9Q_A 2V3C_C 3NDB_B 1ZU5_B 1ZU4_A 1WGW_A ....
Probab=94.90 E-value=0.022 Score=46.45 Aligned_cols=51 Identities=10% Similarity=0.266 Sum_probs=37.2
Q ss_pred chHHHHHHHHHHHHhhhhhhhccchhhHHHHHhhcCCCchhhhhHHHHHHHHHhHHHHhhhhhhHHHHHHHHHH
Q 044777 112 DSLFIKLVEEFERCILSYFAFHWSHADLMISQVLNSDAEPKKKLKHIVMQATREQRFERVTKNLKVARVFTTLV 185 (513)
Q Consensus 112 ~~l~~~~~eele~~~~~~~~~~~~~~~~li~~~l~~~~~~~~~~~~~v~~a~r~~rf~r~~~~~~v~r~~~~~v 185 (513)
+++ .++++|||+ .||++|+|++++ ..|++.+|+.+.. .+.......+...+
T Consensus 21 ~~i-~~~l~ele~--------------~Li~aDVg~~~a------~~i~~~ik~~~~~--~~~~~~~~~v~~~l 71 (75)
T PF02881_consen 21 KDI-EEFLEELEE--------------ALIEADVGVEVA------EKIIENIKKKLIK--KKGINPREEVKKAL 71 (75)
T ss_dssp HHH-HHHHHHHHH--------------HHHHTTTSHHHH------HHHHHHHHHHHHC--TTSSHHHHHHHHHH
T ss_pred HhH-HHHHHHHHH--------------HHHHcCcCHHHH------HHHHHHHHHHHhc--ccCCCcHHHHHHHH
Confidence 347 899999999 999999999888 9999999994433 33444434444433
No 451
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=94.90 E-value=0.025 Score=54.33 Aligned_cols=25 Identities=32% Similarity=0.448 Sum_probs=22.3
Q ss_pred CcEEEEEecCCCCchHHHHHHHhcC
Q 044777 214 SPVLLFMGGGMGAGKSTVLKDILKE 238 (513)
Q Consensus 214 ~P~LILmaG~pGAGKSTla~~Ll~~ 238 (513)
+|.++.++|++||||||+++.+...
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~~ 29 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIPA 29 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHHH
Confidence 5668899999999999999999876
No 452
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=94.90 E-value=0.016 Score=53.29 Aligned_cols=21 Identities=24% Similarity=0.588 Sum_probs=17.4
Q ss_pred EEEecCCCCchHHHHHHHhcC
Q 044777 218 LFMGGGMGAGKSTVLKDILKE 238 (513)
Q Consensus 218 ILmaG~pGAGKSTla~~Ll~~ 238 (513)
|.|.|++|+||||+++.|.+.
T Consensus 2 I~i~G~~stGKTTL~~~L~~~ 22 (163)
T PF13521_consen 2 IVITGGPSTGKTTLIEALAAR 22 (163)
T ss_dssp EEEE--TTSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHc
Confidence 678999999999999999875
No 453
>COG1660 Predicted P-loop-containing kinase [General function prediction only]
Probab=94.89 E-value=0.38 Score=49.56 Aligned_cols=103 Identities=19% Similarity=0.220 Sum_probs=57.2
Q ss_pred CeEEEEEEEecChHHHHHHHHHHHHhcCCcCchhH---HHHHHHHHHHHHHHhhcccceEEEEecCCCCCCCce---E--
Q 044777 366 PYRIELVGVVCDAYLAVVRGIRRAIMCRRAVRVKS---QLKSHKRFANAFLTYCQLVDSARLYSTNALEGPPKL---I-- 437 (513)
Q Consensus 366 gYrI~Lv~V~~dpelAv~Rv~~Rv~~gGh~VP~~~---il~r~~rf~~nf~~~~~lvD~a~lyDNs~~~~~p~L---I-- 437 (513)
++.+.++|+.++-+.-+. |..++.|.=|... .+.....-.+.+.+....+|. +.|||... +..| |
T Consensus 81 ~~~~~iLFLeA~~~~Lv~----RY~etRR~HPL~~~~~l~~~I~~ERelL~pLk~~A~~--vIDTs~ls-~~~Lr~~i~~ 153 (286)
T COG1660 81 DIDPRVLFLEADDETLVR----RYSETRRSHPLSEDGLLLEAIAKERELLAPLREIADL--VIDTSELS-VHELRERIRT 153 (286)
T ss_pred CCCceEEEEECchhHHHH----HHhhhhhcCCCCccCcHHHHHHHHHHHHHHHHHHhhh--EeecccCC-HHHHHHHHHH
Confidence 477889999888776654 5556655555332 355556666667777777776 78998872 1111 0
Q ss_pred -EEeeCCceeeeChhhhHHHHhhccCCccccchhhhccCCCC
Q 044777 438 -GWKERDRTLLVDPDEIDCLKIIGKLNEDAESIYELYKSPNP 478 (513)
Q Consensus 438 -a~k~~~~~~ivd~~~~~~l~~~~~ln~~a~~~~ely~~~~~ 478 (513)
...+....+.+. +..|==|..+=-+|+=+-+.=-.|+|
T Consensus 154 ~f~~~~~~~~~v~---v~SFGFKyGiP~DADlVFDVRfLPNP 192 (286)
T COG1660 154 RFLGKEERTLTVT---VESFGFKYGIPIDADLVFDVRFLPNP 192 (286)
T ss_pred HHccCCCcceEEE---EEecccccCCCCCcceEEEecccCCC
Confidence 111111222111 12233345566667766666655655
No 454
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=94.89 E-value=0.021 Score=56.13 Aligned_cols=25 Identities=32% Similarity=0.425 Sum_probs=22.2
Q ss_pred CCcEEEEEecCCCCchHHHHHHHhc
Q 044777 213 RSPVLLFMGGGMGAGKSTVLKDILK 237 (513)
Q Consensus 213 ~~P~LILmaG~pGAGKSTla~~Ll~ 237 (513)
....++.+.|+|||||||+.+.|..
T Consensus 29 ~~Ge~~~i~G~nGsGKSTLl~~l~G 53 (252)
T PRK14239 29 YPNEITALIGPSGSGKSTLLRSINR 53 (252)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhc
Confidence 4567899999999999999999975
No 455
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=94.88 E-value=0.035 Score=56.13 Aligned_cols=41 Identities=17% Similarity=0.154 Sum_probs=30.9
Q ss_pred CCcEEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEeccccc
Q 044777 213 RSPVLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADAF 256 (513)
Q Consensus 213 ~~P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDef 256 (513)
.+..++.+.|+|||||||+.+.++.. .. ...+-+.++...+
T Consensus 31 ~~Ge~~~i~G~nGaGKSTLl~~i~G~--~~-p~~G~i~~~g~~i 71 (279)
T PRK13635 31 YEGEWVAIVGHNGSGKSTLAKLLNGL--LL-PEAGTITVGGMVL 71 (279)
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhcC--CC-CCCcEEEECCEEC
Confidence 45678999999999999999999864 22 2345677777555
No 456
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=94.88 E-value=0.022 Score=54.72 Aligned_cols=41 Identities=22% Similarity=0.337 Sum_probs=30.3
Q ss_pred CCcEEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEeccccc
Q 044777 213 RSPVLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADAF 256 (513)
Q Consensus 213 ~~P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDef 256 (513)
.+..++.+.|+|||||||+.+.+... .. ...+.+.++...+
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~G~--~~-~~~G~i~~~g~~~ 66 (207)
T PRK13539 26 AAGEALVLTGPNGSGKTTLLRLIAGL--LP-PAAGTIKLDGGDI 66 (207)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCC--CC-CCCceEEECCEeC
Confidence 45679999999999999999999875 22 2245567766443
No 457
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=94.88 E-value=0.021 Score=56.26 Aligned_cols=26 Identities=27% Similarity=0.236 Sum_probs=22.8
Q ss_pred CCcEEEEEecCCCCchHHHHHHHhcC
Q 044777 213 RSPVLLFMGGGMGAGKSTVLKDILKE 238 (513)
Q Consensus 213 ~~P~LILmaG~pGAGKSTla~~Ll~~ 238 (513)
....++.+.|+|||||||+.+.|+..
T Consensus 29 ~~Ge~~~I~G~nGsGKSTLl~~i~G~ 54 (251)
T PRK14244 29 YKREVTAFIGPSGCGKSTFLRCFNRM 54 (251)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 45679999999999999999999764
No 458
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=94.87 E-value=0.021 Score=56.16 Aligned_cols=26 Identities=31% Similarity=0.336 Sum_probs=22.9
Q ss_pred CCcEEEEEecCCCCchHHHHHHHhcC
Q 044777 213 RSPVLLFMGGGMGAGKSTVLKDILKE 238 (513)
Q Consensus 213 ~~P~LILmaG~pGAGKSTla~~Ll~~ 238 (513)
....++.+.|+|||||||+.+.|+..
T Consensus 28 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl 53 (251)
T PRK14251 28 EEKELTALIGPSGCGKSTFLRCLNRM 53 (251)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhhc
Confidence 45678999999999999999999864
No 459
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=94.87 E-value=0.02 Score=56.03 Aligned_cols=43 Identities=21% Similarity=0.290 Sum_probs=30.2
Q ss_pred CCcEEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEeccccc
Q 044777 213 RSPVLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADAF 256 (513)
Q Consensus 213 ~~P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDef 256 (513)
....++.+.|+|||||||+.+.|+....++ ...+-+.++...+
T Consensus 25 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~-~~~G~i~~~g~~~ 67 (248)
T PRK09580 25 RPGEVHAIMGPNGSGKSTLSATLAGREDYE-VTGGTVEFKGKDL 67 (248)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHcCCccCC-CCceEEEECCCcc
Confidence 456799999999999999999998751011 1235566766444
No 460
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=94.86 E-value=0.021 Score=56.25 Aligned_cols=38 Identities=24% Similarity=0.188 Sum_probs=28.4
Q ss_pred CCcEEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEecc
Q 044777 213 RSPVLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEA 253 (513)
Q Consensus 213 ~~P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvIna 253 (513)
....++.+.|+|||||||+.+.|+.. .+ ...+-+.++.
T Consensus 27 ~~Ge~~~i~G~nGsGKSTLl~~l~G~--~~-~~~G~i~~~g 64 (253)
T TIGR02323 27 YPGEVLGIVGESGSGKSTLLGCLAGR--LA-PDHGTATYIM 64 (253)
T ss_pred eCCcEEEEECCCCCCHHHHHHHHhCC--CC-CCCcEEEEec
Confidence 45679999999999999999999875 22 2235566654
No 461
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=94.86 E-value=0.037 Score=54.78 Aligned_cols=41 Identities=22% Similarity=0.210 Sum_probs=30.2
Q ss_pred CCcEEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEeccccc
Q 044777 213 RSPVLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADAF 256 (513)
Q Consensus 213 ~~P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDef 256 (513)
....++.+.|+|||||||+.+.|+.. .+ ...+-+.++...+
T Consensus 25 ~~Ge~~~i~G~nGsGKSTLl~~i~G~--~~-~~~G~i~~~g~~~ 65 (256)
T TIGR03873 25 PPGSLTGLLGPNGSGKSTLLRLLAGA--LR-PDAGTVDLAGVDL 65 (256)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHcCC--CC-CCCCEEEECCEEc
Confidence 46679999999999999999999864 21 2235566766444
No 462
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=94.85 E-value=0.021 Score=57.17 Aligned_cols=40 Identities=20% Similarity=0.275 Sum_probs=29.4
Q ss_pred CCcEEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEecccc
Q 044777 213 RSPVLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADA 255 (513)
Q Consensus 213 ~~P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDe 255 (513)
....++.+.|+|||||||+.+.|+.. .+ ...+-+.++...
T Consensus 31 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl--~~-p~~G~i~~~g~~ 70 (269)
T PRK11831 31 PRGKITAIMGPSGIGKTTLLRLIGGQ--IA-PDHGEILFDGEN 70 (269)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCC--CC-CCCceEEECCEE
Confidence 45678999999999999999999875 22 224556666543
No 463
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=94.85 E-value=0.022 Score=56.17 Aligned_cols=42 Identities=19% Similarity=0.201 Sum_probs=29.8
Q ss_pred CCcEEEEEecCCCCchHHHHHHHhcCccccc----CCCCeEEeccccc
Q 044777 213 RSPVLLFMGGGMGAGKSTVLKDILKEPFWAG----AAGNAVVIEADAF 256 (513)
Q Consensus 213 ~~P~LILmaG~pGAGKSTla~~Ll~~~f~~~----~~~~aVvInaDef 256 (513)
....++.+.|+|||||||+.+.|+.. ... ...+-+.++...+
T Consensus 28 ~~Ge~~~i~G~nGsGKSTLl~~l~G~--~~~~~~~~~~G~i~~~g~~i 73 (251)
T PRK14270 28 YENKITALIGPSGCGKSTFLRCLNRM--NDLISNVKIEGEVLLDGKNI 73 (251)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhc--cCcccCCCCccEEEECCEec
Confidence 45679999999999999999999864 110 0135567765444
No 464
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=94.84 E-value=0.022 Score=56.23 Aligned_cols=26 Identities=35% Similarity=0.400 Sum_probs=22.9
Q ss_pred CCcEEEEEecCCCCchHHHHHHHhcC
Q 044777 213 RSPVLLFMGGGMGAGKSTVLKDILKE 238 (513)
Q Consensus 213 ~~P~LILmaG~pGAGKSTla~~Ll~~ 238 (513)
....++.+.|+|||||||+.+.|+..
T Consensus 28 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl 53 (252)
T PRK14256 28 PENSVTAIIGPSGCGKSTVLRSINRM 53 (252)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhc
Confidence 35668999999999999999999875
No 465
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=94.84 E-value=0.022 Score=57.22 Aligned_cols=40 Identities=23% Similarity=0.249 Sum_probs=28.9
Q ss_pred CCcEEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEecccc
Q 044777 213 RSPVLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADA 255 (513)
Q Consensus 213 ~~P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDe 255 (513)
....++.+.|+|||||||+.+.|+.. .+ ...+-+.++...
T Consensus 31 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl--~~-p~~G~i~~~g~~ 70 (272)
T PRK15056 31 PGGSIAALVGVNGSGKSTLFKALMGF--VR-LASGKISILGQP 70 (272)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCC--CC-CCceEEEECCEE
Confidence 45678999999999999999999864 21 223456666543
No 466
>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.
Probab=94.83 E-value=0.029 Score=53.02 Aligned_cols=21 Identities=33% Similarity=0.770 Sum_probs=19.3
Q ss_pred EEEEecCCCCchHHHHHHHhc
Q 044777 217 LLFMGGGMGAGKSTVLKDILK 237 (513)
Q Consensus 217 LILmaG~pGAGKSTla~~Ll~ 237 (513)
+++++|..||||||+++.+++
T Consensus 2 v~ii~GfLGsGKTTli~~ll~ 22 (178)
T PF02492_consen 2 VIIITGFLGSGKTTLINHLLK 22 (178)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 578899999999999999994
No 467
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=94.83 E-value=0.022 Score=56.00 Aligned_cols=25 Identities=28% Similarity=0.391 Sum_probs=22.4
Q ss_pred CCcEEEEEecCCCCchHHHHHHHhc
Q 044777 213 RSPVLLFMGGGMGAGKSTVLKDILK 237 (513)
Q Consensus 213 ~~P~LILmaG~pGAGKSTla~~Ll~ 237 (513)
....++.+.|+|||||||+.+.|+.
T Consensus 27 ~~Ge~~~i~G~nGsGKSTLl~~i~G 51 (250)
T PRK14240 27 EENQVTALIGPSGCGKSTFLRTLNR 51 (250)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhc
Confidence 4567899999999999999999986
No 468
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=94.82 E-value=0.033 Score=53.83 Aligned_cols=41 Identities=22% Similarity=0.328 Sum_probs=30.0
Q ss_pred CCcEEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEeccccc
Q 044777 213 RSPVLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADAF 256 (513)
Q Consensus 213 ~~P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDef 256 (513)
....++.+.|+|||||||+.+.+... ++ ...+-+.++...+
T Consensus 35 ~~Ge~~~i~G~nGsGKSTLl~~i~G~--~~-~~~G~i~~~g~~i 75 (214)
T PRK13543 35 DAGEALLVQGDNGAGKTTLLRVLAGL--LH-VESGQIQIDGKTA 75 (214)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCC--CC-CCCeeEEECCEEc
Confidence 35568999999999999999999875 32 2235566665444
No 469
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=94.82 E-value=0.027 Score=58.84 Aligned_cols=42 Identities=24% Similarity=0.343 Sum_probs=30.3
Q ss_pred CcEEEEEecCCCCchHHHHHHHhcCcccccC--CCCeEEecccccc
Q 044777 214 SPVLLFMGGGMGAGKSTVLKDILKEPFWAGA--AGNAVVIEADAFK 257 (513)
Q Consensus 214 ~P~LILmaG~pGAGKSTla~~Ll~~~f~~~~--~~~aVvInaDefR 257 (513)
.|..+++.|+||+||||+++.++.+ .... ...+++||+....
T Consensus 54 ~~~~~lI~G~~GtGKT~l~~~v~~~--l~~~~~~~~~v~in~~~~~ 97 (394)
T PRK00411 54 RPLNVLIYGPPGTGKTTTVKKVFEE--LEEIAVKVVYVYINCQIDR 97 (394)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHH--HHHhcCCcEEEEEECCcCC
Confidence 4556789999999999999999875 1111 2346778876654
No 470
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.81 E-value=0.022 Score=57.14 Aligned_cols=41 Identities=27% Similarity=0.391 Sum_probs=30.1
Q ss_pred CCcEEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEeccccc
Q 044777 213 RSPVLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADAF 256 (513)
Q Consensus 213 ~~P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDef 256 (513)
....++.+.|+|||||||+.+.|+.. .+ ...+-+.++...+
T Consensus 48 ~~Ge~~~l~G~nGsGKSTLl~~L~Gl--~~-p~~G~i~i~g~~~ 88 (269)
T cd03294 48 REGEIFVIMGLSGSGKSTLLRCINRL--IE-PTSGKVLIDGQDI 88 (269)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcC--CC-CCCeEEEECCEEc
Confidence 45679999999999999999999875 22 2245566765443
No 471
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=94.81 E-value=0.023 Score=45.77 Aligned_cols=34 Identities=21% Similarity=0.407 Sum_probs=26.3
Q ss_pred EEEEecCCCCchHHHHHHHhcCcccccCCCCeEEec
Q 044777 217 LLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIE 252 (513)
Q Consensus 217 LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvIn 252 (513)
+++++|.+|+||||++..++.. +...+.....++
T Consensus 1 ~~~~~g~~G~Gktt~~~~l~~~--l~~~g~~v~~~~ 34 (99)
T cd01983 1 VIVVTGKGGVGKTTLAANLAAA--LAKRGKRVLLID 34 (99)
T ss_pred CEEEECCCCCCHHHHHHHHHHH--HHHCCCeEEEEC
Confidence 3678899999999999999876 544455666667
No 472
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=94.81 E-value=0.023 Score=56.80 Aligned_cols=44 Identities=20% Similarity=0.221 Sum_probs=29.4
Q ss_pred CCcEEEEEecCCCCchHHHHHHHhcCcc-cc-cCCCCeEEeccccc
Q 044777 213 RSPVLLFMGGGMGAGKSTVLKDILKEPF-WA-GAAGNAVVIEADAF 256 (513)
Q Consensus 213 ~~P~LILmaG~pGAGKSTla~~Ll~~~f-~~-~~~~~aVvInaDef 256 (513)
....++.+.|+|||||||+.+.|+.... .+ ....+-+.++...+
T Consensus 45 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i 90 (268)
T PRK14248 45 EKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNI 90 (268)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEc
Confidence 3567899999999999999999976310 00 01235566765444
No 473
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=94.81 E-value=0.023 Score=56.03 Aligned_cols=42 Identities=19% Similarity=0.184 Sum_probs=29.6
Q ss_pred CCcEEEEEecCCCCchHHHHHHHhcCcccccC----CCCeEEeccccc
Q 044777 213 RSPVLLFMGGGMGAGKSTVLKDILKEPFWAGA----AGNAVVIEADAF 256 (513)
Q Consensus 213 ~~P~LILmaG~pGAGKSTla~~Ll~~~f~~~~----~~~aVvInaDef 256 (513)
....++.+.|+|||||||+.+.++.. .+.. ..+-+.++...+
T Consensus 28 ~~Ge~~~l~G~nGsGKSTLl~~l~G~--~~~~~~~~~~G~i~~~g~~i 73 (253)
T PRK14267 28 PQNGVFALMGPSGCGKSTLLRTFNRL--LELNEEARVEGEVRLFGRNI 73 (253)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcc--CCcccCCCCceEEEECCEEc
Confidence 45678999999999999999999865 2110 135566665433
No 474
>PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases. Some of the members are found in positive-strand single stranded RNA viruses. The helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis [].; GO: 0004386 helicase activity
Probab=94.81 E-value=0.016 Score=55.59 Aligned_cols=21 Identities=43% Similarity=0.749 Sum_probs=19.3
Q ss_pred EEEecCCCCchHHHHHHHhcC
Q 044777 218 LFMGGGMGAGKSTVLKDILKE 238 (513)
Q Consensus 218 ILmaG~pGAGKSTla~~Ll~~ 238 (513)
+++.|+|||||||+++.++..
T Consensus 1 ~vv~G~pGsGKSt~i~~~~~~ 21 (234)
T PF01443_consen 1 IVVHGVPGSGKSTLIKKLLKD 21 (234)
T ss_pred CEEEcCCCCCHHHHHHHHHHh
Confidence 478999999999999999886
No 475
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=94.80 E-value=0.023 Score=56.08 Aligned_cols=25 Identities=28% Similarity=0.321 Sum_probs=22.3
Q ss_pred CCcEEEEEecCCCCchHHHHHHHhc
Q 044777 213 RSPVLLFMGGGMGAGKSTVLKDILK 237 (513)
Q Consensus 213 ~~P~LILmaG~pGAGKSTla~~Ll~ 237 (513)
....++.+.|+|||||||+++.++.
T Consensus 30 ~~Ge~~~i~G~nGsGKSTLl~~l~G 54 (253)
T PRK14261 30 PKNRVTALIGPSGCGKSTLLRCFNR 54 (253)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhc
Confidence 4567899999999999999999985
No 476
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=94.80 E-value=0.022 Score=56.07 Aligned_cols=25 Identities=28% Similarity=0.349 Sum_probs=22.2
Q ss_pred CCcEEEEEecCCCCchHHHHHHHhc
Q 044777 213 RSPVLLFMGGGMGAGKSTVLKDILK 237 (513)
Q Consensus 213 ~~P~LILmaG~pGAGKSTla~~Ll~ 237 (513)
....++.+.|+|||||||+.+.|+.
T Consensus 27 ~~Ge~~~i~G~nGsGKSTLl~~i~G 51 (250)
T PRK14245 27 EEKSVVAFIGPSGCGKSTFLRLFNR 51 (250)
T ss_pred eCCCEEEEECCCCCCHHHHHHHHhh
Confidence 4567899999999999999999964
No 477
>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=94.79 E-value=0.021 Score=56.54 Aligned_cols=24 Identities=25% Similarity=0.275 Sum_probs=20.8
Q ss_pred cEEEEEecCCCCchHHHHHHHhcC
Q 044777 215 PVLLFMGGGMGAGKSTVLKDILKE 238 (513)
Q Consensus 215 P~LILmaG~pGAGKSTla~~Ll~~ 238 (513)
+.+.++.|+|||||||+..++.--
T Consensus 22 ~~~~~i~G~NGsGKStll~ai~~~ 45 (247)
T cd03275 22 DRFTCIIGPNGSGKSNLMDAISFV 45 (247)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 348899999999999999998753
No 478
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=94.79 E-value=0.023 Score=54.74 Aligned_cols=40 Identities=28% Similarity=0.333 Sum_probs=30.0
Q ss_pred CCcEEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEecccc
Q 044777 213 RSPVLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADA 255 (513)
Q Consensus 213 ~~P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDe 255 (513)
....++.+.|+|||||||+.+.|+.. +. ...+.+.++...
T Consensus 25 ~~Ge~~~i~G~nGsGKSTLl~~i~G~--~~-~~~G~i~~~g~~ 64 (218)
T cd03290 25 PTGQLTMIVGQVGCGKSSLLLAILGE--MQ-TLEGKVHWSNKN 64 (218)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcc--CC-CCCCeEEECCcc
Confidence 45679999999999999999999875 32 234556675543
No 479
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=94.78 E-value=0.023 Score=56.45 Aligned_cols=42 Identities=21% Similarity=0.340 Sum_probs=29.8
Q ss_pred CCcEEEEEecCCCCchHHHHHHHhcCcccccCC--CCeEEeccccc
Q 044777 213 RSPVLLFMGGGMGAGKSTVLKDILKEPFWAGAA--GNAVVIEADAF 256 (513)
Q Consensus 213 ~~P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~--~~aVvInaDef 256 (513)
....++.+.|+|||||||+.+.|+.. ..... .+-+.++.-.+
T Consensus 28 ~~Ge~~~i~G~nGsGKSTLl~~i~G~--~~p~~~~~G~i~~~g~~~ 71 (262)
T PRK09984 28 HHGEMVALLGPSGSGKSTLLRHLSGL--ITGDKSAGSHIELLGRTV 71 (262)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhcc--CCCCCCCceEEEECCEec
Confidence 45679999999999999999999865 22111 24566666443
No 480
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=94.78 E-value=0.023 Score=55.84 Aligned_cols=42 Identities=19% Similarity=0.234 Sum_probs=29.9
Q ss_pred CCcEEEEEecCCCCchHHHHHHHhcCcccccC----CCCeEEeccccc
Q 044777 213 RSPVLLFMGGGMGAGKSTVLKDILKEPFWAGA----AGNAVVIEADAF 256 (513)
Q Consensus 213 ~~P~LILmaG~pGAGKSTla~~Ll~~~f~~~~----~~~aVvInaDef 256 (513)
....++.+.|+|||||||+.+.|+.. .... ..+-+.++...+
T Consensus 25 ~~Ge~~~i~G~nGsGKSTLl~~l~G~--~~p~~~~~~~G~i~~~g~~~ 70 (247)
T TIGR00972 25 PKNQVTALIGPSGCGKSTLLRSLNRM--NDLVPGVRIEGKVLFDGQDI 70 (247)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcc--CCCCcCCCCceEEEECCEEc
Confidence 45678999999999999999999864 2111 034566766544
No 481
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=94.76 E-value=0.11 Score=56.67 Aligned_cols=26 Identities=31% Similarity=0.461 Sum_probs=23.8
Q ss_pred CCcEEEEEecCCCCchHHHHHHHhcC
Q 044777 213 RSPVLLFMGGGMGAGKSTVLKDILKE 238 (513)
Q Consensus 213 ~~P~LILmaG~pGAGKSTla~~Ll~~ 238 (513)
+.|.-+|+.||||+|||.++++++.+
T Consensus 274 ~~~~giLl~GpPGtGKT~lAkava~~ 299 (494)
T COG0464 274 RPPKGVLLYGPPGTGKTLLAKAVALE 299 (494)
T ss_pred CCCCeeEEECCCCCCHHHHHHHHHhh
Confidence 56779999999999999999999986
No 482
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=94.75 E-value=0.038 Score=56.15 Aligned_cols=41 Identities=17% Similarity=0.285 Sum_probs=30.6
Q ss_pred CCcEEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEeccccc
Q 044777 213 RSPVLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADAF 256 (513)
Q Consensus 213 ~~P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDef 256 (513)
....++.+.|+|||||||+.+.|... .+ ...+-+.++...+
T Consensus 31 ~~Ge~~~i~G~nGaGKSTLl~~l~Gl--~~-p~~G~i~~~g~~~ 71 (287)
T PRK13637 31 EDGEFVGLIGHTGSGKSTLIQHLNGL--LK-PTSGKIIIDGVDI 71 (287)
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhcC--CC-CCccEEEECCEEC
Confidence 35668999999999999999999864 21 2345677776555
No 483
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=94.75 E-value=0.036 Score=52.98 Aligned_cols=41 Identities=20% Similarity=0.251 Sum_probs=30.1
Q ss_pred CCcEEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEeccccc
Q 044777 213 RSPVLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADAF 256 (513)
Q Consensus 213 ~~P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDef 256 (513)
....++.+.|+|||||||+.+.++.. ++. ..+-+.++...+
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~l~G~--~~~-~~G~i~~~g~~~ 64 (201)
T cd03231 24 AAGEALQVTGPNGSGKTTLLRILAGL--SPP-LAGRVLLNGGPL 64 (201)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCC--CCC-CCcEEEECCEec
Confidence 45679999999999999999999875 322 235566665443
No 484
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=94.75 E-value=0.024 Score=56.55 Aligned_cols=37 Identities=22% Similarity=0.237 Sum_probs=27.2
Q ss_pred CcEEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEecc
Q 044777 214 SPVLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEA 253 (513)
Q Consensus 214 ~P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvIna 253 (513)
...++.+.|+|||||||+.+.|+.. .. ...+.+.++.
T Consensus 24 ~Ge~~~i~G~NGsGKSTLlk~L~G~--~~-p~~G~i~~~g 60 (246)
T cd03237 24 ESEVIGILGPNGIGKTTFIKMLAGV--LK-PDEGDIEIEL 60 (246)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC--Cc-CCCCeEEECC
Confidence 4568999999999999999999774 11 1234455555
No 485
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=94.75 E-value=0.024 Score=56.27 Aligned_cols=26 Identities=27% Similarity=0.254 Sum_probs=22.6
Q ss_pred CCcEEEEEecCCCCchHHHHHHHhcC
Q 044777 213 RSPVLLFMGGGMGAGKSTVLKDILKE 238 (513)
Q Consensus 213 ~~P~LILmaG~pGAGKSTla~~Ll~~ 238 (513)
....++.+.|+|||||||+.+.|+..
T Consensus 36 ~~Ge~~~l~G~nGsGKSTLl~~l~G~ 61 (259)
T PRK14274 36 PENEVTAIIGPSGCGKSTFIKTLNLM 61 (259)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 35668999999999999999999864
No 486
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=94.75 E-value=0.024 Score=55.87 Aligned_cols=27 Identities=26% Similarity=0.273 Sum_probs=23.3
Q ss_pred CCCcEEEEEecCCCCchHHHHHHHhcC
Q 044777 212 DRSPVLLFMGGGMGAGKSTVLKDILKE 238 (513)
Q Consensus 212 ~~~P~LILmaG~pGAGKSTla~~Ll~~ 238 (513)
-....++.+.|+|||||||+.+.|+..
T Consensus 28 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl 54 (252)
T PRK14255 28 FNQNEITALIGPSGCGKSTYLRTLNRM 54 (252)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 345679999999999999999999763
No 487
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=94.75 E-value=0.025 Score=54.69 Aligned_cols=39 Identities=26% Similarity=0.298 Sum_probs=28.5
Q ss_pred CCcEEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEeccc
Q 044777 213 RSPVLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEAD 254 (513)
Q Consensus 213 ~~P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaD 254 (513)
.+..++.+.|+|||||||+.+.++.. .+ ...+.+.++..
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~l~G~--~~-~~~G~i~~~~~ 62 (223)
T TIGR03740 24 PKNSVYGLLGPNGAGKSTLLKMITGI--LR-PTSGEIIFDGH 62 (223)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCC--CC-CCceEEEECCE
Confidence 45668999999999999999999875 22 22344566543
No 488
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=94.74 E-value=0.025 Score=48.81 Aligned_cols=21 Identities=24% Similarity=0.357 Sum_probs=19.1
Q ss_pred EEEecCCCCchHHHHHHHhcC
Q 044777 218 LFMGGGMGAGKSTVLKDILKE 238 (513)
Q Consensus 218 ILmaG~pGAGKSTla~~Ll~~ 238 (513)
|++.|.+||||||+.+.|...
T Consensus 2 V~iiG~~~~GKSTlin~l~~~ 22 (116)
T PF01926_consen 2 VAIIGRPNVGKSTLINALTGK 22 (116)
T ss_dssp EEEEESTTSSHHHHHHHHHTS
T ss_pred EEEECCCCCCHHHHHHHHhcc
Confidence 578999999999999999864
No 489
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=94.73 E-value=0.034 Score=58.67 Aligned_cols=43 Identities=21% Similarity=0.347 Sum_probs=33.7
Q ss_pred CCcEEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEeccccccc
Q 044777 213 RSPVLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADAFKE 258 (513)
Q Consensus 213 ~~P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDefR~ 258 (513)
+...++++-||+||||||+.+.++.- +....+-+.|+...+-.
T Consensus 27 ~~Gef~vllGPSGcGKSTlLr~IAGL---e~~~~G~I~i~g~~vt~ 69 (338)
T COG3839 27 EDGEFVVLLGPSGCGKSTLLRMIAGL---EEPTSGEILIDGRDVTD 69 (338)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCC---CCCCCceEEECCEECCC
Confidence 34568899999999999999999863 23456778888877754
No 490
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=94.73 E-value=0.024 Score=56.77 Aligned_cols=42 Identities=24% Similarity=0.271 Sum_probs=30.3
Q ss_pred CCCcEEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEeccccc
Q 044777 212 DRSPVLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADAF 256 (513)
Q Consensus 212 ~~~P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDef 256 (513)
-....++.+.|+|||||||+.+.|+.. .+ ...+-+.++...+
T Consensus 36 i~~Ge~~~i~G~NGsGKSTLl~~l~Gl--~~-p~~G~i~~~g~~~ 77 (267)
T PRK15112 36 LREGQTLAIIGENGSGKSTLAKMLAGM--IE-PTSGELLIDDHPL 77 (267)
T ss_pred ecCCCEEEEEcCCCCCHHHHHHHHhCC--CC-CCCCEEEECCEEC
Confidence 346679999999999999999999875 22 2245566665433
No 491
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=94.73 E-value=0.025 Score=55.63 Aligned_cols=26 Identities=27% Similarity=0.326 Sum_probs=22.8
Q ss_pred CCcEEEEEecCCCCchHHHHHHHhcC
Q 044777 213 RSPVLLFMGGGMGAGKSTVLKDILKE 238 (513)
Q Consensus 213 ~~P~LILmaG~pGAGKSTla~~Ll~~ 238 (513)
....++.+.|+|||||||+++.|+..
T Consensus 27 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl 52 (249)
T PRK14253 27 PARQVTALIGPSGCGKSTLLRCLNRM 52 (249)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 45679999999999999999999764
No 492
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=94.72 E-value=0.025 Score=56.43 Aligned_cols=26 Identities=35% Similarity=0.459 Sum_probs=23.0
Q ss_pred CCcEEEEEecCCCCchHHHHHHHhcC
Q 044777 213 RSPVLLFMGGGMGAGKSTVLKDILKE 238 (513)
Q Consensus 213 ~~P~LILmaG~pGAGKSTla~~Ll~~ 238 (513)
....++.+.|+|||||||+.+.++..
T Consensus 28 ~~Ge~~~I~G~NGsGKSTLl~~i~Gl 53 (251)
T PRK09544 28 KPGKILTLLGPNGAGKSTLVRVVLGL 53 (251)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 46678999999999999999999864
No 493
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=94.71 E-value=0.041 Score=55.53 Aligned_cols=41 Identities=22% Similarity=0.263 Sum_probs=30.5
Q ss_pred CCcEEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEeccccc
Q 044777 213 RSPVLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADAF 256 (513)
Q Consensus 213 ~~P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDef 256 (513)
....++.+.|+|||||||+.+.+... .. ...+.+.++...+
T Consensus 34 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl--~~-~~~G~i~i~g~~i 74 (280)
T PRK13633 34 KKGEFLVILGRNGSGKSTIAKHMNAL--LI-PSEGKVYVDGLDT 74 (280)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCC--CC-CCCceEEECCEec
Confidence 45678999999999999999999865 22 2345677776544
No 494
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=94.70 E-value=0.023 Score=55.03 Aligned_cols=23 Identities=43% Similarity=0.582 Sum_probs=20.3
Q ss_pred cEEEEEecCCCCchHHHHHHHhc
Q 044777 215 PVLLFMGGGMGAGKSTVLKDILK 237 (513)
Q Consensus 215 P~LILmaG~pGAGKSTla~~Ll~ 237 (513)
..++.+.|+|||||||+.+.+.-
T Consensus 28 ~~~~~i~G~NGsGKSTll~~i~~ 50 (213)
T cd03279 28 NGLFLICGPTGAGKSTILDAITY 50 (213)
T ss_pred cCEEEEECCCCCCHHHHHHHhee
Confidence 45889999999999999999863
No 495
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB. This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.
Probab=94.70 E-value=0.069 Score=59.72 Aligned_cols=90 Identities=18% Similarity=0.156 Sum_probs=56.1
Q ss_pred EEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEe-cccccccchhhhhhhhccccCchhhHHHHHhHhHHHHHHHHHH
Q 044777 216 VLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVI-EADAFKESDVIYRALSSRSHVDMLQTAELVHQSSTDAASSLLV 294 (513)
Q Consensus 216 ~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvI-naDefR~~~p~y~~l~~~G~~Dp~qaae~v~~eAtrlA~~li~ 294 (513)
-+++++|+.||||||+...++.. ......+++-| |+-++. +|. .... + +....+.-....+.
T Consensus 317 Glilv~G~tGSGKTTtl~a~l~~--~~~~~~~i~tiEdpvE~~--~~~---~~q~------~----v~~~~g~~~~~~l~ 379 (564)
T TIGR02538 317 GMVLVTGPTGSGKTVSLYTALNI--LNTEEVNISTAEDPVEIN--LPG---INQV------N----VNPKIGLTFAAALR 379 (564)
T ss_pred CeEEEECCCCCCHHHHHHHHHHh--hCCCCceEEEecCCceec--CCC---ceEE------E----eccccCCCHHHHHH
Confidence 48999999999999999888775 22222233333 444442 111 1110 0 00111112345678
Q ss_pred HHHHCCCcEEEECcCCChHHHHHHHHHH
Q 044777 295 TALNEGRDVIMDGTLSWVPFVVQTITMA 322 (513)
Q Consensus 295 ~aL~~GrsVIlDtTlS~~~~~~qii~~A 322 (513)
.+|.+.=+||+=+=.++++.....++.|
T Consensus 380 ~~LR~dPDvI~vGEiRd~eta~~a~~aa 407 (564)
T TIGR02538 380 SFLRQDPDIIMVGEIRDLETAEIAIKAA 407 (564)
T ss_pred HHhccCCCEEEeCCCCCHHHHHHHHHHH
Confidence 8999999999999999988877666655
No 496
>PHA03132 thymidine kinase; Provisional
Probab=94.68 E-value=0.7 Score=52.25 Aligned_cols=24 Identities=38% Similarity=0.652 Sum_probs=21.7
Q ss_pred cEEEEEecCCCCchHHHHHHHhcC
Q 044777 215 PVLLFMGGGMGAGKSTVLKDILKE 238 (513)
Q Consensus 215 P~LILmaG~pGAGKSTla~~Ll~~ 238 (513)
-.+|.|-|..||||||+++.|.+.
T Consensus 257 ~~fIv~EGidGsGKTTlik~L~e~ 280 (580)
T PHA03132 257 ACFLFLEGVMGVGKTTLLNHMRGI 280 (580)
T ss_pred eEEEEEECCCCCCHHHHHHHHHHH
Confidence 378899999999999999999875
No 497
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=94.68 E-value=0.025 Score=55.67 Aligned_cols=43 Identities=21% Similarity=0.314 Sum_probs=29.8
Q ss_pred CCcEEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEeccccc
Q 044777 213 RSPVLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADAF 256 (513)
Q Consensus 213 ~~P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDef 256 (513)
....++.+.|+|||||||+.+.|+....+. ...+-+.++...+
T Consensus 31 ~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~-~~~G~i~~~g~~~ 73 (252)
T CHL00131 31 NKGEIHAIMGPNGSGKSTLSKVIAGHPAYK-ILEGDILFKGESI 73 (252)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHcCCCcCc-CCCceEEECCEEc
Confidence 456799999999999999999987631011 1245566765444
No 498
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=94.68 E-value=0.027 Score=53.77 Aligned_cols=42 Identities=26% Similarity=0.334 Sum_probs=30.3
Q ss_pred CCcEEEEEecCCCCchHHHHHHHhcCcccc-cCCCCeEEeccccc
Q 044777 213 RSPVLLFMGGGMGAGKSTVLKDILKEPFWA-GAAGNAVVIEADAF 256 (513)
Q Consensus 213 ~~P~LILmaG~pGAGKSTla~~Ll~~~f~~-~~~~~aVvInaDef 256 (513)
....++.+.|+|||||||+.+.++.. .+ ....+-+.++...+
T Consensus 33 ~~Ge~~~l~G~nGsGKStLl~~i~Gl--~~~~~~~G~i~~~g~~~ 75 (194)
T cd03213 33 KPGELTAIMGPSGAGKSTLLNALAGR--RTGLGVSGEVLINGRPL 75 (194)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCC--CCCCCCceEEEECCEeC
Confidence 46679999999999999999999875 20 12245566765444
No 499
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=94.68 E-value=0.025 Score=57.75 Aligned_cols=40 Identities=20% Similarity=0.220 Sum_probs=29.0
Q ss_pred CCcEEEEEecCCCCchHHHHHHHhcCcccccCCCCeEEecccc
Q 044777 213 RSPVLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADA 255 (513)
Q Consensus 213 ~~P~LILmaG~pGAGKSTla~~Ll~~~f~~~~~~~aVvInaDe 255 (513)
....++.+.|+|||||||+.+.|+.. .. ...+-+.++...
T Consensus 28 ~~Ge~~~l~G~NGaGKSTLl~~l~Gl--~~-p~~G~i~~~g~~ 67 (303)
T TIGR01288 28 ARGECFGLLGPNGAGKSTIARMLLGM--IS-PDRGKITVLGEP 67 (303)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCC--CC-CCceEEEECCEE
Confidence 45678999999999999999999874 21 223556665543
No 500
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=94.67 E-value=0.024 Score=54.94 Aligned_cols=20 Identities=35% Similarity=0.627 Sum_probs=18.9
Q ss_pred EEEEecCCCCchHHHHHHHh
Q 044777 217 LLFMGGGMGAGKSTVLKDIL 236 (513)
Q Consensus 217 LILmaG~pGAGKSTla~~Ll 236 (513)
++++.|+|||||||+.+.+.
T Consensus 24 ~~~i~G~NGsGKTTLl~ai~ 43 (204)
T cd03240 24 LTLIVGQNGAGKTTIIEALK 43 (204)
T ss_pred eEEEECCCCCCHHHHHHHHH
Confidence 99999999999999999984
Done!